Query 002564
Match_columns 907
No_of_seqs 1198 out of 4449
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 02:32:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002564.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002564hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1539 WD repeat protein [Gen 100.0 2E-148 5E-153 1163.6 77.7 880 1-907 21-910 (910)
2 KOG0291 WD40-repeat-containing 100.0 6.4E-59 1.4E-63 483.6 67.4 657 24-903 65-852 (893)
3 KOG0319 WD40-repeat-containing 100.0 3.7E-57 7.9E-62 470.7 52.0 705 24-893 29-759 (775)
4 KOG0306 WD40-repeat-containing 100.0 9.5E-56 2.1E-60 459.7 52.9 773 4-903 8-855 (888)
5 PF04192 Utp21: Utp21 specific 100.0 6.5E-59 1.4E-63 449.2 16.8 214 682-904 17-237 (237)
6 KOG0318 WD40 repeat stress pro 100.0 1.1E-49 2.3E-54 398.9 61.6 563 15-628 18-601 (603)
7 KOG0318 WD40 repeat stress pro 100.0 1.2E-48 2.6E-53 391.4 54.5 515 23-587 68-602 (603)
8 KOG0291 WD40-repeat-containing 100.0 2.6E-47 5.7E-52 397.1 59.7 521 25-631 24-614 (893)
9 KOG0271 Notchless-like WD40 re 100.0 1.1E-50 2.3E-55 390.2 29.2 366 172-627 106-479 (480)
10 KOG0319 WD40-repeat-containing 100.0 2.7E-49 5.8E-54 412.1 40.6 487 24-585 115-617 (775)
11 KOG0271 Notchless-like WD40 re 100.0 2.3E-50 4.9E-55 387.9 29.0 365 130-585 108-479 (480)
12 KOG0306 WD40-repeat-containing 100.0 1.8E-45 4E-50 383.2 50.2 482 24-588 75-665 (888)
13 KOG1408 WD40 repeat protein [F 100.0 1.5E-42 3.3E-47 358.2 36.7 547 25-628 47-712 (1080)
14 KOG0272 U4/U6 small nuclear ri 100.0 2.1E-42 4.6E-47 338.1 24.2 279 224-627 175-458 (459)
15 KOG0272 U4/U6 small nuclear ri 100.0 4.2E-42 9.2E-47 335.9 24.0 283 179-585 173-458 (459)
16 KOG1063 RNA polymerase II elon 100.0 7.2E-38 1.6E-42 324.3 45.8 545 15-629 14-699 (764)
17 KOG0286 G-protein beta subunit 100.0 5.1E-39 1.1E-43 299.6 32.6 289 217-585 49-343 (343)
18 KOG0276 Vesicle coat complex C 100.0 7.4E-38 1.6E-42 319.8 44.0 470 89-627 9-488 (794)
19 KOG0296 Angio-associated migra 100.0 8E-39 1.7E-43 307.5 33.6 341 172-587 55-398 (399)
20 KOG1408 WD40 repeat protein [F 100.0 5.3E-38 1.2E-42 324.7 38.9 486 24-589 88-715 (1080)
21 KOG0286 G-protein beta subunit 100.0 3.8E-38 8.3E-43 293.8 32.1 290 130-502 48-343 (343)
22 KOG0315 G-protein beta subunit 100.0 1.7E-37 3.7E-42 282.6 31.1 291 236-606 9-308 (311)
23 KOG0279 G protein beta subunit 100.0 3.6E-37 7.7E-42 285.8 33.4 299 87-454 9-313 (315)
24 KOG0273 Beta-transducin family 100.0 2.5E-37 5.5E-42 306.4 33.8 325 178-629 175-523 (524)
25 KOG0315 G-protein beta subunit 100.0 7.6E-37 1.6E-41 278.4 31.9 295 194-566 11-309 (311)
26 KOG2106 Uncharacterized conser 100.0 1.1E-34 2.4E-39 289.6 50.0 517 10-628 60-625 (626)
27 KOG1063 RNA polymerase II elon 100.0 2.3E-35 5E-40 305.8 39.3 485 68-630 25-649 (764)
28 KOG0279 G protein beta subunit 100.0 9.9E-36 2.2E-40 276.2 32.2 298 130-504 8-313 (315)
29 KOG1539 WD repeat protein [Gen 100.0 7E-34 1.5E-38 300.8 50.4 542 8-587 67-648 (910)
30 KOG2048 WD40 repeat protein [G 100.0 3.8E-33 8.3E-38 289.3 53.1 538 54-629 23-601 (691)
31 KOG0273 Beta-transducin family 100.0 1.6E-35 3.5E-40 293.7 33.4 324 136-545 177-523 (524)
32 KOG0276 Vesicle coat complex C 100.0 2.6E-34 5.7E-39 293.9 42.3 463 53-585 10-488 (794)
33 KOG0292 Vesicle coat complex C 100.0 9.2E-34 2E-38 300.6 44.5 500 55-617 8-547 (1202)
34 KOG0296 Angio-associated migra 100.0 1.2E-34 2.6E-39 278.9 33.4 340 130-545 57-398 (399)
35 KOG0295 WD40 repeat-containing 100.0 1.2E-35 2.6E-40 285.4 25.7 288 216-628 101-405 (406)
36 KOG0645 WD40 repeat protein [G 100.0 9.3E-34 2E-38 261.9 33.9 293 172-587 5-311 (312)
37 KOG0263 Transcription initiati 100.0 3E-35 6.6E-40 311.4 26.1 281 172-588 369-650 (707)
38 KOG0263 Transcription initiati 100.0 2.1E-35 4.5E-40 312.6 22.9 283 215-634 370-654 (707)
39 KOG0310 Conserved WD40 repeat- 100.0 8.5E-34 1.8E-38 283.6 32.8 443 224-907 26-485 (487)
40 KOG0295 WD40 repeat-containing 100.0 1.5E-34 3.3E-39 277.8 25.3 307 170-586 97-405 (406)
41 KOG2106 Uncharacterized conser 100.0 3.1E-32 6.6E-37 272.2 42.5 467 24-586 114-625 (626)
42 KOG0284 Polyadenylation factor 100.0 2.5E-35 5.4E-40 287.1 17.8 279 224-628 96-379 (464)
43 KOG0292 Vesicle coat complex C 100.0 2.4E-32 5.2E-37 289.9 41.7 424 89-617 5-508 (1202)
44 KOG0645 WD40 repeat protein [G 100.0 1.3E-32 2.8E-37 254.4 32.4 294 130-504 7-311 (312)
45 KOG0285 Pleiotropic regulator 100.0 1.1E-33 2.4E-38 270.7 24.6 280 221-627 148-437 (460)
46 KOG0265 U5 snRNP-specific prot 100.0 4.9E-33 1.1E-37 261.0 28.0 282 221-585 44-336 (338)
47 KOG0293 WD40 repeat-containing 100.0 9.4E-34 2E-38 276.1 23.3 291 261-629 218-513 (519)
48 KOG0293 WD40 repeat-containing 100.0 1.7E-33 3.7E-38 274.3 23.5 291 172-588 215-514 (519)
49 KOG0285 Pleiotropic regulator 100.0 3.3E-33 7.1E-38 267.4 24.8 295 86-455 144-440 (460)
50 KOG0284 Polyadenylation factor 100.0 3.8E-34 8.2E-39 278.9 17.3 283 138-504 97-380 (464)
51 KOG0265 U5 snRNP-specific prot 100.0 2.6E-32 5.7E-37 256.1 26.8 299 127-502 37-336 (338)
52 KOG0282 mRNA splicing factor [ 100.0 1E-33 2.2E-38 282.3 18.4 288 258-627 205-503 (503)
53 KOG0278 Serine/threonine kinas 100.0 2.8E-33 6E-38 255.1 19.1 290 175-591 8-301 (334)
54 cd00200 WD40 WD40 domain, foun 100.0 2.5E-31 5.5E-36 280.4 36.6 286 175-585 3-289 (289)
55 KOG0282 mRNA splicing factor [ 100.0 6.7E-33 1.4E-37 276.5 18.6 290 171-585 204-503 (503)
56 KOG2048 WD40 repeat protein [G 100.0 2.4E-28 5.1E-33 253.9 51.5 499 92-628 24-547 (691)
57 cd00200 WD40 WD40 domain, foun 100.0 1.5E-30 3.3E-35 274.5 35.6 285 261-627 3-289 (289)
58 KOG0316 Conserved WD40 repeat- 100.0 4.3E-31 9.4E-36 238.8 25.3 283 217-627 11-297 (307)
59 KOG0313 Microtubule binding pr 100.0 7.6E-31 1.7E-35 253.8 28.7 305 224-629 105-418 (423)
60 KOG0266 WD40 repeat-containing 100.0 8E-31 1.7E-35 289.2 32.7 290 217-587 152-454 (456)
61 KOG0281 Beta-TrCP (transducin 100.0 2E-32 4.4E-37 260.7 15.6 277 180-592 196-482 (499)
62 PLN00181 protein SPA1-RELATED; 100.0 8.3E-30 1.8E-34 303.6 40.3 301 160-586 457-792 (793)
63 KOG0266 WD40 repeat-containing 100.0 2E-30 4.3E-35 286.0 31.9 288 137-504 159-454 (456)
64 KOG0316 Conserved WD40 repeat- 100.0 4.3E-30 9.4E-35 232.4 27.0 284 173-542 9-296 (307)
65 KOG0275 Conserved WD40 repeat- 100.0 8.5E-32 1.9E-36 254.0 15.9 291 130-502 205-507 (508)
66 KOG0281 Beta-TrCP (transducin 100.0 9.2E-32 2E-36 256.3 15.2 275 55-348 196-481 (499)
67 PLN00181 protein SPA1-RELATED; 100.0 2.4E-29 5.2E-34 299.7 39.4 303 246-628 457-792 (793)
68 KOG0275 Conserved WD40 repeat- 100.0 3.9E-31 8.4E-36 249.5 18.3 285 179-585 211-507 (508)
69 KOG0643 Translation initiation 100.0 1.4E-29 3.1E-34 233.5 27.8 292 176-588 5-318 (327)
70 KOG1407 WD40 repeat protein [F 100.0 1.1E-29 2.4E-34 233.6 26.4 276 266-621 18-295 (313)
71 KOG0643 Translation initiation 100.0 5.4E-29 1.2E-33 229.7 25.0 232 89-334 6-251 (327)
72 KOG0278 Serine/threonine kinas 100.0 1.6E-29 3.5E-34 230.6 19.2 280 266-628 12-296 (334)
73 KOG0640 mRNA cleavage stimulat 100.0 4E-29 8.6E-34 235.0 21.8 291 221-587 109-426 (430)
74 KOG0313 Microtubule binding pr 100.0 2.2E-28 4.7E-33 236.9 26.2 278 55-343 104-417 (423)
75 KOG1446 Histone H3 (Lys4) meth 100.0 7.6E-27 1.6E-31 222.2 34.0 281 224-587 14-303 (311)
76 KOG0288 WD40 repeat protein Ti 100.0 4E-29 8.7E-34 244.5 18.3 286 259-627 167-459 (459)
77 KOG0310 Conserved WD40 repeat- 100.0 3.6E-28 7.8E-33 243.4 25.2 277 181-542 26-306 (487)
78 KOG0305 Anaphase promoting com 100.0 6.8E-28 1.5E-32 252.3 28.4 278 185-589 181-463 (484)
79 KOG0288 WD40 repeat protein Ti 100.0 4.3E-29 9.4E-34 244.2 17.3 276 223-584 174-458 (459)
80 KOG1407 WD40 repeat protein [F 100.0 5.9E-27 1.3E-31 215.7 26.7 280 175-537 14-294 (313)
81 KOG0305 Anaphase promoting com 100.0 2.5E-27 5.3E-32 248.2 27.5 269 152-506 189-463 (484)
82 KOG0640 mRNA cleavage stimulat 100.0 2.1E-27 4.6E-32 223.4 23.2 292 266-629 110-426 (430)
83 KOG0274 Cdc4 and related F-box 100.0 5.6E-27 1.2E-31 256.3 30.4 281 180-595 207-490 (537)
84 KOG0283 WD40 repeat-containing 100.0 1.2E-27 2.5E-32 256.6 23.6 300 170-547 255-578 (712)
85 KOG0973 Histone transcription 100.0 3.3E-27 7.1E-32 259.5 27.6 304 266-628 11-354 (942)
86 KOG0289 mRNA splicing factor [ 100.0 9.6E-27 2.1E-31 229.1 26.8 282 225-586 220-505 (506)
87 KOG0772 Uncharacterized conser 100.0 3E-27 6.5E-32 237.3 23.6 302 217-587 161-487 (641)
88 KOG0274 Cdc4 and related F-box 100.0 1.7E-26 3.7E-31 252.5 31.5 283 92-462 207-490 (537)
89 KOG0646 WD40 repeat protein [G 100.0 5.6E-27 1.2E-31 233.5 24.7 296 199-609 13-330 (476)
90 KOG1446 Histone H3 (Lys4) meth 100.0 1.5E-25 3.3E-30 213.4 33.2 294 171-544 4-302 (311)
91 KOG0308 Conserved WD40 repeat- 100.0 9.7E-28 2.1E-32 247.7 19.5 352 102-554 36-402 (735)
92 KOG1445 Tumor-specific antigen 100.0 6.7E-26 1.5E-30 232.4 32.7 537 84-631 70-800 (1012)
93 KOG0268 Sof1-like rRNA process 100.0 5.4E-28 1.2E-32 232.5 16.1 292 86-462 59-353 (433)
94 KOG0283 WD40 repeat-containing 100.0 6.2E-27 1.3E-31 251.0 24.9 299 312-629 265-576 (712)
95 KOG0647 mRNA export protein (c 100.0 3.8E-26 8.3E-31 214.9 26.3 278 217-576 20-312 (347)
96 KOG0294 WD40 repeat-containing 100.0 7.9E-26 1.7E-30 214.0 28.3 264 196-589 4-283 (362)
97 KOG0277 Peroxisomal targeting 100.0 9.5E-27 2.1E-31 213.5 20.8 260 75-343 38-308 (311)
98 KOG0300 WD40 repeat-containing 100.0 1.5E-26 3.2E-31 218.2 22.4 307 152-589 125-478 (481)
99 KOG0299 U3 snoRNP-associated p 100.0 3.4E-26 7.3E-31 227.5 26.1 285 174-534 135-444 (479)
100 KOG0268 Sof1-like rRNA process 100.0 1.3E-27 2.8E-32 230.0 15.3 282 260-629 59-345 (433)
101 KOG2055 WD40 repeat protein [G 99.9 3.5E-26 7.7E-31 227.1 24.8 284 268-629 213-512 (514)
102 KOG0289 mRNA splicing factor [ 99.9 7E-26 1.5E-30 223.1 26.2 278 143-503 225-505 (506)
103 KOG0973 Histone transcription 99.9 3.7E-26 8E-31 251.3 27.1 291 180-547 12-357 (942)
104 KOG0308 Conserved WD40 repeat- 99.9 1.2E-26 2.6E-31 239.6 21.1 346 186-628 29-392 (735)
105 KOG0639 Transducin-like enhanc 99.9 1.4E-26 3E-31 231.4 20.6 285 266-628 417-703 (705)
106 KOG0772 Uncharacterized conser 99.9 7.5E-26 1.6E-30 227.3 24.9 301 171-543 157-485 (641)
107 KOG0641 WD40 repeat protein [G 99.9 4.6E-24 1E-28 191.9 33.5 297 173-545 25-349 (350)
108 KOG0646 WD40 repeat protein [G 99.9 7E-26 1.5E-30 225.8 23.7 292 161-525 18-329 (476)
109 KOG0301 Phospholipase A2-activ 99.9 9E-26 2E-30 235.1 24.9 241 86-344 7-249 (745)
110 KOG1273 WD40 repeat protein [G 99.9 3E-25 6.6E-30 209.7 26.1 279 227-628 26-321 (405)
111 KOG0294 WD40 repeat-containing 99.9 1.6E-25 3.4E-30 212.0 24.0 247 86-347 36-284 (362)
112 KOG0647 mRNA export protein (c 99.9 2.3E-25 5.1E-30 209.6 24.6 280 179-534 25-312 (347)
113 KOG0300 WD40 repeat-containing 99.9 1E-25 2.3E-30 212.5 22.2 296 130-506 141-478 (481)
114 KOG0299 U3 snoRNP-associated p 99.9 2.6E-25 5.7E-30 221.2 26.2 299 131-501 136-453 (479)
115 PTZ00421 coronin; Provisional 99.9 1.3E-24 2.9E-29 237.9 34.6 231 176-485 70-314 (493)
116 PTZ00420 coronin; Provisional 99.9 1.7E-24 3.6E-29 237.6 35.0 250 157-486 50-318 (568)
117 KOG1036 Mitotic spindle checkp 99.9 8.1E-25 1.8E-29 207.2 27.3 274 218-577 7-294 (323)
118 KOG2096 WD40 repeat protein [G 99.9 8.6E-25 1.9E-29 206.9 26.1 292 222-585 84-400 (420)
119 KOG0641 WD40 repeat protein [G 99.9 1.1E-23 2.3E-28 189.6 31.3 290 267-629 31-349 (350)
120 KOG0301 Phospholipase A2-activ 99.9 9.4E-25 2E-29 227.6 28.3 283 171-588 4-289 (745)
121 PTZ00421 coronin; Provisional 99.9 3.6E-24 7.9E-29 234.5 34.4 233 88-325 70-314 (493)
122 KOG1445 Tumor-specific antigen 99.9 1.9E-24 4.2E-29 221.7 29.8 168 173-345 71-249 (1012)
123 KOG1274 WD40 repeat protein [G 99.9 5.5E-24 1.2E-28 229.1 34.6 278 265-627 10-298 (933)
124 KOG0277 Peroxisomal targeting 99.9 2.5E-25 5.4E-30 204.2 19.9 255 35-296 37-307 (311)
125 KOG0639 Transducin-like enhanc 99.9 2.8E-25 6E-30 222.1 21.6 281 179-544 417-703 (705)
126 KOG2096 WD40 repeat protein [G 99.9 2.1E-24 4.6E-29 204.2 26.0 300 86-502 79-400 (420)
127 PTZ00420 coronin; Provisional 99.9 1.9E-23 4.1E-28 229.3 34.7 228 109-346 50-295 (568)
128 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5E-23 1.1E-27 219.0 36.8 284 239-608 3-300 (300)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.3E-23 1.6E-27 217.8 36.4 294 152-525 2-300 (300)
130 KOG1036 Mitotic spindle checkp 99.9 1.2E-23 2.5E-28 199.4 26.1 277 180-535 12-294 (323)
131 KOG0650 WD40 repeat nucleolar 99.9 9.1E-24 2E-28 216.2 26.7 319 173-584 392-732 (733)
132 KOG1274 WD40 repeat protein [G 99.9 1.5E-20 3.2E-25 202.9 52.3 245 90-345 10-263 (933)
133 KOG4283 Transcription-coupled 99.9 2.7E-23 5.9E-28 194.6 25.5 300 178-586 40-364 (397)
134 KOG1332 Vesicle coat complex C 99.9 5.8E-24 1.3E-28 194.2 20.1 235 152-454 24-286 (299)
135 KOG1963 WD40 repeat protein [G 99.9 1.1E-21 2.5E-26 211.3 39.3 494 63-630 23-584 (792)
136 KOG2055 WD40 repeat protein [G 99.9 4.5E-23 9.8E-28 205.1 25.1 289 93-454 213-512 (514)
137 KOG1332 Vesicle coat complex C 99.9 1.2E-23 2.6E-28 192.1 18.3 253 89-344 7-286 (299)
138 KOG0264 Nucleosome remodeling 99.9 4.2E-23 9.1E-28 206.0 23.6 254 89-345 120-405 (422)
139 KOG1963 WD40 repeat protein [G 99.9 1.4E-20 3E-25 203.0 43.2 450 101-630 26-539 (792)
140 KOG1273 WD40 repeat protein [G 99.9 1.2E-22 2.6E-27 192.3 23.6 282 184-587 26-322 (405)
141 KOG1538 Uncharacterized conser 99.9 3.7E-21 7.9E-26 199.0 33.0 275 139-504 14-293 (1081)
142 KOG0269 WD40 repeat-containing 99.9 6.1E-23 1.3E-27 216.7 20.2 286 181-589 39-342 (839)
143 KOG0264 Nucleosome remodeling 99.9 8.9E-23 1.9E-27 203.7 20.2 243 53-298 121-404 (422)
144 KOG4328 WD40 protein [Function 99.9 4E-22 8.6E-27 198.4 24.4 303 252-629 171-495 (498)
145 KOG1538 Uncharacterized conser 99.9 2.3E-21 4.9E-26 200.5 29.9 489 57-583 13-520 (1081)
146 KOG0321 WD40 repeat-containing 99.9 5.3E-22 1.1E-26 205.2 24.9 386 151-609 64-553 (720)
147 KOG4283 Transcription-coupled 99.9 6.9E-22 1.5E-26 185.3 22.9 293 136-503 42-364 (397)
148 KOG0650 WD40 repeat nucleolar 99.9 7.3E-22 1.6E-26 202.4 23.1 317 265-627 397-733 (733)
149 KOG2445 Nuclear pore complex c 99.9 4.3E-21 9.3E-26 181.5 26.1 288 261-608 6-342 (361)
150 KOG4328 WD40 protein [Function 99.9 2.7E-21 5.7E-26 192.5 24.8 304 166-587 171-495 (498)
151 KOG2445 Nuclear pore complex c 99.9 1E-20 2.2E-25 179.0 27.1 254 89-344 9-318 (361)
152 COG2319 FOG: WD40 repeat [Gene 99.9 9E-19 1.9E-23 197.0 48.8 372 175-630 59-443 (466)
153 KOG4378 Nuclear protein COP1 [ 99.9 1.7E-21 3.8E-26 195.0 22.2 289 202-569 11-305 (673)
154 KOG0321 WD40 repeat-containing 99.9 3E-21 6.5E-26 199.7 23.7 318 228-589 53-393 (720)
155 COG2319 FOG: WD40 repeat [Gene 99.9 3E-18 6.5E-23 192.8 50.8 369 135-588 63-443 (466)
156 KOG0269 WD40 repeat-containing 99.9 6.9E-22 1.5E-26 208.8 19.3 282 56-344 39-340 (839)
157 KOG0267 Microtubule severing p 99.9 7.6E-23 1.6E-27 214.2 10.4 249 26-289 4-259 (825)
158 KOG0267 Microtubule severing p 99.9 6.3E-23 1.4E-27 214.8 9.6 243 77-336 16-260 (825)
159 KOG4378 Nuclear protein COP1 [ 99.9 1.3E-20 2.8E-25 188.8 22.3 292 28-331 4-309 (673)
160 KOG4497 Uncharacterized conser 99.9 1.6E-20 3.5E-25 178.9 21.3 352 142-580 13-425 (447)
161 KOG1034 Transcriptional repres 99.9 2.8E-20 6E-25 177.6 21.0 333 89-504 34-383 (385)
162 KOG2919 Guanine nucleotide-bin 99.9 8.5E-20 1.8E-24 173.8 23.8 285 270-619 51-361 (406)
163 KOG0302 Ribosome Assembly prot 99.9 3.8E-20 8.2E-25 179.8 21.3 249 89-342 147-436 (440)
164 KOG0270 WD40 repeat-containing 99.9 4.5E-20 9.9E-25 183.4 20.1 241 103-349 192-454 (463)
165 KOG1034 Transcriptional repres 99.9 2.6E-20 5.7E-25 177.8 17.4 323 178-545 35-383 (385)
166 KOG4497 Uncharacterized conser 99.8 9.2E-20 2E-24 173.8 20.4 342 186-620 13-424 (447)
167 KOG1188 WD40 repeat protein [G 99.8 7.7E-20 1.7E-24 175.7 19.4 287 152-503 41-345 (376)
168 KOG1524 WD40 repeat-containing 99.8 1.7E-18 3.6E-23 175.5 28.5 437 90-628 11-522 (737)
169 KOG1009 Chromatin assembly com 99.8 8.5E-19 1.9E-23 172.4 25.1 328 181-591 13-376 (434)
170 KOG0302 Ribosome Assembly prot 99.8 2.7E-19 5.8E-24 174.0 21.2 208 139-348 153-382 (440)
171 KOG0270 WD40 repeat-containing 99.8 1.2E-19 2.7E-24 180.3 18.5 284 142-551 130-455 (463)
172 KOG0322 G-protein beta subunit 99.8 1.1E-19 2.5E-24 168.2 16.7 308 172-586 5-322 (323)
173 KOG2919 Guanine nucleotide-bin 99.8 3.2E-18 6.9E-23 163.1 25.2 280 137-496 49-362 (406)
174 KOG0307 Vesicle coat complex C 99.8 8.7E-20 1.9E-24 202.3 14.7 288 227-633 9-331 (1049)
175 KOG1310 WD40 repeat protein [G 99.8 1.2E-18 2.6E-23 177.0 20.7 171 173-344 42-231 (758)
176 KOG1009 Chromatin assembly com 99.8 2.1E-18 4.6E-23 169.7 21.7 292 268-620 13-364 (434)
177 KOG4227 WD40 repeat protein [G 99.8 3.4E-18 7.5E-23 166.4 22.3 302 175-586 50-386 (609)
178 KOG1188 WD40 repeat protein [G 99.8 5.2E-18 1.1E-22 163.3 21.1 276 194-587 41-346 (376)
179 KOG0290 Conserved WD40 repeat- 99.8 2.5E-17 5.4E-22 154.9 24.6 289 213-620 35-358 (364)
180 KOG1272 WD40-repeat-containing 99.8 9.1E-20 2E-24 181.8 8.0 298 314-698 129-449 (545)
181 PF02239 Cytochrom_D1: Cytochr 99.8 2.2E-16 4.8E-21 167.7 33.9 334 152-597 6-357 (369)
182 KOG0649 WD40 repeat protein [G 99.8 1.4E-16 3.1E-21 145.9 27.1 269 57-341 11-313 (325)
183 PRK11028 6-phosphogluconolacto 99.8 3E-16 6.6E-21 168.1 34.7 273 283-629 5-304 (330)
184 KOG0642 Cell-cycle nuclear pro 99.8 1.6E-18 3.6E-23 177.6 16.0 271 262-598 289-572 (577)
185 KOG0307 Vesicle coat complex C 99.8 5.3E-19 1.1E-23 196.2 13.0 275 110-457 36-330 (1049)
186 PRK11028 6-phosphogluconolacto 99.8 6.8E-16 1.5E-20 165.4 35.9 281 198-545 7-304 (330)
187 KOG0303 Actin-binding protein 99.8 1.3E-17 2.9E-22 163.1 19.9 235 86-324 74-319 (472)
188 KOG0322 G-protein beta subunit 99.8 1.7E-17 3.6E-22 153.9 17.8 291 84-453 5-322 (323)
189 KOG0644 Uncharacterized conser 99.8 1.4E-18 2.9E-23 185.0 11.9 285 173-548 182-471 (1113)
190 KOG0642 Cell-cycle nuclear pro 99.8 1.6E-17 3.6E-22 170.3 17.0 263 175-512 288-569 (577)
191 KOG1912 WD40 repeat protein [G 99.8 2.2E-15 4.8E-20 159.7 32.9 432 25-547 24-553 (1062)
192 KOG1517 Guanine nucleotide bin 99.7 3.1E-16 6.8E-21 171.5 25.7 290 226-590 1066-1384(1387)
193 KOG2110 Uncharacterized conser 99.7 7.6E-15 1.7E-19 143.4 32.5 272 24-302 14-334 (391)
194 KOG1517 Guanine nucleotide bin 99.7 2E-16 4.3E-21 173.0 24.0 308 112-547 1049-1383(1387)
195 KOG1007 WD repeat protein TSSC 99.7 1.5E-16 3.2E-21 149.5 19.8 296 112-454 39-361 (370)
196 KOG0649 WD40 repeat protein [G 99.7 2E-15 4.4E-20 138.4 26.4 285 270-627 12-314 (325)
197 PF02239 Cytochrom_D1: Cytochr 99.7 4.6E-15 9.9E-20 157.7 33.4 327 107-554 10-356 (369)
198 KOG1310 WD40 repeat protein [G 99.7 4.1E-16 9E-21 158.8 23.6 225 222-506 48-305 (758)
199 KOG1007 WD repeat protein TSSC 99.7 2.5E-16 5.5E-21 147.9 20.1 251 89-344 59-361 (370)
200 KOG4547 WD40 repeat-containing 99.7 7.2E-16 1.6E-20 160.1 25.3 488 324-893 3-520 (541)
201 KOG1587 Cytoplasmic dynein int 99.7 8.5E-16 1.9E-20 167.0 27.0 284 247-588 222-517 (555)
202 KOG1524 WD40 repeat-containing 99.7 4.3E-16 9.4E-21 158.2 22.8 263 224-584 14-283 (737)
203 KOG0303 Actin-binding protein 99.7 9.8E-16 2.1E-20 150.2 22.0 209 132-347 76-297 (472)
204 KOG0771 Prolactin regulatory e 99.7 2.6E-15 5.6E-20 149.5 25.3 193 428-630 148-355 (398)
205 KOG2110 Uncharacterized conser 99.7 8.5E-15 1.8E-19 143.0 27.9 310 145-546 13-331 (391)
206 KOG2111 Uncharacterized conser 99.7 2E-14 4.2E-19 137.8 29.5 227 25-257 15-258 (346)
207 KOG4227 WD40 repeat protein [G 99.7 1.4E-15 3E-20 148.5 22.0 307 132-503 51-386 (609)
208 KOG1240 Protein kinase contain 99.7 1.6E-15 3.5E-20 168.8 24.9 267 80-349 1034-1339(1431)
209 KOG1523 Actin-related protein 99.7 5.3E-15 1.2E-19 141.5 24.9 165 176-343 5-175 (361)
210 KOG0644 Uncharacterized conser 99.7 3.9E-17 8.6E-22 174.0 11.0 284 258-628 181-467 (1113)
211 KOG1240 Protein kinase contain 99.7 2.2E-15 4.7E-20 167.9 24.9 342 208-627 1034-1431(1431)
212 KOG1587 Cytoplasmic dynein int 99.7 3.7E-15 8E-20 162.1 26.3 274 203-546 222-517 (555)
213 KOG2139 WD40 repeat protein [G 99.7 1.6E-14 3.5E-19 140.3 26.0 197 137-344 98-309 (445)
214 KOG1334 WD40 repeat protein [G 99.7 3.1E-16 6.7E-21 157.9 14.6 317 173-547 134-468 (559)
215 KOG1334 WD40 repeat protein [G 99.7 1.9E-16 4E-21 159.5 13.0 306 217-589 136-468 (559)
216 KOG2139 WD40 repeat protein [G 99.7 1.8E-14 3.8E-19 140.0 25.8 304 181-587 98-431 (445)
217 KOG0771 Prolactin regulatory e 99.7 1.1E-15 2.4E-20 152.1 16.5 203 228-505 148-355 (398)
218 KOG0974 WD-repeat protein WDR6 99.7 3.3E-13 7.1E-18 149.2 36.8 273 56-349 7-293 (967)
219 KOG0290 Conserved WD40 repeat- 99.7 2.8E-14 6.2E-19 134.5 24.0 290 170-536 34-357 (364)
220 PRK01742 tolB translocation pr 99.7 5E-15 1.1E-19 163.5 21.4 236 160-485 183-426 (429)
221 KOG0974 WD-repeat protein WDR6 99.7 2.3E-12 4.9E-17 142.7 41.1 189 101-300 97-290 (967)
222 KOG1912 WD40 repeat protein [G 99.6 8.4E-14 1.8E-18 147.9 26.2 452 140-630 18-552 (1062)
223 KOG2315 Predicted translation 99.6 6.2E-13 1.3E-17 137.3 31.6 356 154-629 5-390 (566)
224 COG4946 Uncharacterized protei 99.6 2.7E-11 5.9E-16 122.1 42.1 437 133-618 32-508 (668)
225 KOG2315 Predicted translation 99.6 9.1E-13 2E-17 136.1 31.6 374 108-608 6-410 (566)
226 KOG1272 WD40-repeat-containing 99.6 2.4E-15 5.1E-20 150.7 12.2 268 224-579 129-401 (545)
227 PRK01742 tolB translocation pr 99.6 3.8E-14 8.3E-19 156.5 23.0 235 246-568 183-426 (429)
228 COG5354 Uncharacterized protei 99.6 1.8E-12 4E-17 132.1 31.1 359 164-620 15-421 (561)
229 KOG1523 Actin-related protein 99.6 2.4E-13 5.2E-18 130.4 23.2 208 136-347 9-239 (361)
230 KOG2321 WD40 repeat protein [G 99.6 2.8E-13 6E-18 139.5 24.1 271 266-621 49-336 (703)
231 KOG1354 Serine/threonine prote 99.6 1.7E-13 3.7E-18 132.3 21.0 331 181-627 25-432 (433)
232 KOG2041 WD40 repeat protein [G 99.6 7.3E-12 1.6E-16 132.0 34.0 518 55-636 13-626 (1189)
233 KOG3881 Uncharacterized conser 99.6 2.6E-13 5.6E-18 133.8 21.4 273 225-609 56-342 (412)
234 KOG2394 WD40 protein DMR-N9 [G 99.6 8.6E-14 1.9E-18 142.1 18.4 95 473-567 289-384 (636)
235 KOG2394 WD40 protein DMR-N9 [G 99.6 1E-13 2.2E-18 141.6 18.5 239 102-350 134-458 (636)
236 KOG2321 WD40 repeat protein [G 99.6 7.2E-13 1.6E-17 136.5 24.7 275 14-300 54-345 (703)
237 KOG3881 Uncharacterized conser 99.6 1.9E-13 4.1E-18 134.7 19.2 267 181-526 55-342 (412)
238 PF04762 IKI3: IKI3 family; I 99.6 5.3E-09 1.1E-13 123.8 59.1 478 92-629 74-639 (928)
239 PRK03629 tolB translocation pr 99.6 1.1E-12 2.5E-17 144.3 26.5 236 162-484 180-427 (429)
240 KOG2111 Uncharacterized conser 99.5 9.2E-12 2E-16 119.7 28.5 237 142-457 10-259 (346)
241 PF10282 Lactonase: Lactonase, 99.5 7.3E-11 1.6E-15 126.3 39.2 306 240-606 2-345 (345)
242 PF10282 Lactonase: Lactonase, 99.5 2.8E-11 6.1E-16 129.5 35.2 281 283-629 2-322 (345)
243 PRK03629 tolB translocation pr 99.5 2.6E-12 5.6E-17 141.5 27.5 170 427-608 245-427 (429)
244 PRK04922 tolB translocation pr 99.5 7.9E-12 1.7E-16 138.5 30.4 232 291-608 185-432 (433)
245 COG2706 3-carboxymuconate cycl 99.5 6.8E-11 1.5E-15 116.8 32.8 272 289-631 15-323 (346)
246 PRK02889 tolB translocation pr 99.5 1.5E-12 3.3E-17 143.5 23.9 178 161-346 176-362 (427)
247 COG5354 Uncharacterized protei 99.5 3.1E-11 6.8E-16 123.2 29.8 335 206-629 15-395 (561)
248 PRK04922 tolB translocation pr 99.5 2E-12 4.3E-17 143.3 23.5 178 161-346 184-370 (433)
249 KOG1409 Uncharacterized conser 99.5 2E-12 4.4E-17 125.2 19.6 247 86-346 17-272 (404)
250 PF08662 eIF2A: Eukaryotic tra 99.5 2.2E-12 4.7E-17 124.5 19.7 148 478-629 9-179 (194)
251 PRK05137 tolB translocation pr 99.5 8.8E-12 1.9E-16 138.4 27.1 175 161-343 182-365 (435)
252 PRK02889 tolB translocation pr 99.5 1.3E-11 2.8E-16 136.3 27.8 239 203-568 176-425 (427)
253 KOG1409 Uncharacterized conser 99.5 5.8E-12 1.2E-16 122.1 21.0 335 172-588 15-395 (404)
254 TIGR02658 TTQ_MADH_Hv methylam 99.5 3.3E-10 7.1E-15 117.4 35.4 277 161-512 27-338 (352)
255 PRK05137 tolB translocation pr 99.5 2E-11 4.3E-16 135.5 28.1 232 291-608 183-432 (435)
256 PF08662 eIF2A: Eukaryotic tra 99.5 4.8E-12 1.1E-16 122.0 20.1 158 427-596 8-187 (194)
257 TIGR02658 TTQ_MADH_Hv methylam 99.5 7.2E-10 1.6E-14 114.8 36.7 270 203-554 27-339 (352)
258 KOG2314 Translation initiation 99.5 5.3E-11 1.2E-15 122.5 26.8 328 163-577 192-557 (698)
259 PF04762 IKI3: IKI3 family; I 99.4 2.2E-08 4.7E-13 118.6 52.7 474 24-587 85-639 (928)
260 KOG2041 WD40 repeat protein [G 99.4 3.7E-10 8E-15 119.5 32.3 501 23-586 23-618 (1189)
261 COG2706 3-carboxymuconate cycl 99.4 1.7E-09 3.8E-14 107.0 34.4 302 246-607 15-345 (346)
262 KOG4547 WD40 repeat-containing 99.4 7E-11 1.5E-15 123.5 23.7 194 103-303 5-225 (541)
263 KOG1354 Serine/threonine prote 99.3 7.8E-11 1.7E-15 114.3 18.5 292 267-592 24-364 (433)
264 KOG2314 Translation initiation 99.3 2.1E-09 4.6E-14 111.0 29.4 321 141-537 214-559 (698)
265 TIGR03300 assembly_YfgL outer 99.3 1.3E-09 2.8E-14 119.3 30.1 300 152-542 66-376 (377)
266 PRK04792 tolB translocation pr 99.3 4.1E-10 8.9E-15 124.6 25.6 172 162-341 199-377 (448)
267 TIGR02800 propeller_TolB tol-p 99.3 3.5E-10 7.6E-15 126.0 25.2 177 161-345 170-355 (417)
268 TIGR02800 propeller_TolB tol-p 99.3 4.2E-10 9.1E-15 125.4 25.2 207 399-621 169-387 (417)
269 TIGR03300 assembly_YfgL outer 99.3 4.1E-09 8.9E-14 115.3 31.2 298 100-501 62-376 (377)
270 PRK01029 tolB translocation pr 99.3 1.5E-09 3.3E-14 119.0 27.5 133 477-610 283-426 (428)
271 PRK04792 tolB translocation pr 99.3 1.1E-09 2.4E-14 121.3 25.8 169 428-608 265-446 (448)
272 PRK00178 tolB translocation pr 99.3 1.3E-09 2.7E-14 121.5 25.9 176 162-345 180-364 (430)
273 COG4946 Uncharacterized protei 99.3 1.4E-07 3.1E-12 95.9 37.2 265 55-333 224-507 (668)
274 PRK00178 tolB translocation pr 99.2 2.3E-09 5E-14 119.4 26.3 193 424-627 198-404 (430)
275 KOG1832 HIV-1 Vpr-binding prot 99.2 2.1E-11 4.5E-16 131.6 8.0 271 258-620 1092-1381(1516)
276 PRK01029 tolB translocation pr 99.2 4E-09 8.6E-14 115.8 25.1 196 425-629 185-403 (428)
277 KOG0309 Conserved WD40 repeat- 99.2 2.9E-10 6.2E-15 120.9 14.9 287 181-588 24-340 (1081)
278 KOG0280 Uncharacterized conser 99.2 5.7E-09 1.2E-13 99.6 21.8 271 201-590 44-336 (339)
279 KOG4532 WD40-like repeat conta 99.2 1.8E-08 3.9E-13 94.9 23.3 272 159-505 50-332 (344)
280 KOG1064 RAVE (regulator of V-A 99.2 3.7E-10 8.1E-15 131.2 14.6 224 194-554 2181-2407(2439)
281 KOG1064 RAVE (regulator of V-A 99.1 5.7E-10 1.2E-14 129.7 14.7 182 159-350 2188-2372(2439)
282 KOG0280 Uncharacterized conser 99.1 8.6E-09 1.9E-13 98.4 18.5 237 105-345 87-334 (339)
283 PRK11138 outer membrane biogen 99.1 9.3E-08 2E-12 105.0 29.5 304 152-544 70-393 (394)
284 PLN02919 haloacid dehalogenase 99.1 1.2E-07 2.6E-12 114.8 32.5 273 228-592 571-893 (1057)
285 PLN02919 haloacid dehalogenase 99.0 2.3E-07 4.9E-12 112.5 32.2 261 185-549 571-892 (1057)
286 KOG4190 Uncharacterized conser 99.0 2.4E-09 5.2E-14 110.0 11.4 287 266-625 733-1032(1034)
287 PRK04043 tolB translocation pr 99.0 1.2E-07 2.6E-12 103.4 24.8 190 426-628 189-397 (419)
288 COG5170 CDC55 Serine/threonine 99.0 4.5E-08 9.8E-13 94.0 17.6 335 181-627 26-458 (460)
289 KOG3914 WD repeat protein WDR4 98.9 5.9E-09 1.3E-13 104.2 11.8 171 425-598 63-234 (390)
290 KOG4190 Uncharacterized conser 98.9 2.6E-09 5.6E-14 109.8 9.3 288 216-583 728-1032(1034)
291 PF04003 Utp12: Dip2/Utp12 Fam 98.9 1.8E-09 3.9E-14 93.8 6.6 105 785-904 1-108 (110)
292 KOG0309 Conserved WD40 repeat- 98.9 1.1E-08 2.4E-13 109.1 13.4 200 139-347 26-235 (1081)
293 KOG4532 WD40-like repeat conta 98.9 2.7E-07 5.8E-12 87.2 20.1 228 102-335 83-323 (344)
294 PRK11138 outer membrane biogen 98.9 2.6E-06 5.7E-11 93.5 31.7 301 25-343 68-393 (394)
295 KOG3914 WD repeat protein WDR4 98.9 4.4E-08 9.6E-13 98.1 15.7 171 270-515 64-234 (390)
296 KOG0882 Cyclophilin-related pe 98.9 3.4E-08 7.4E-13 99.7 14.3 252 267-596 8-314 (558)
297 KOG4714 Nucleoporin [Nuclear s 98.9 6.6E-08 1.4E-12 90.8 14.8 187 153-345 49-255 (319)
298 PF08450 SGL: SMP-30/Gluconola 98.9 5.5E-06 1.2E-10 84.5 30.5 183 427-617 42-244 (246)
299 PRK04043 tolB translocation pr 98.8 1.5E-06 3.2E-11 94.9 27.0 164 161-335 169-339 (419)
300 KOG4649 PQQ (pyrrolo-quinoline 98.8 2.3E-05 5.1E-10 74.1 30.7 106 102-213 62-167 (354)
301 PF15492 Nbas_N: Neuroblastoma 98.8 3E-06 6.5E-11 81.9 24.9 147 186-335 2-168 (282)
302 PF15492 Nbas_N: Neuroblastoma 98.8 3.7E-06 8E-11 81.3 24.9 243 274-598 3-270 (282)
303 KOG4649 PQQ (pyrrolo-quinoline 98.8 3.5E-05 7.6E-10 73.0 30.5 135 152-292 24-159 (354)
304 KOG1897 Damage-specific DNA bi 98.8 0.00077 1.7E-08 76.1 53.1 566 15-625 306-938 (1096)
305 KOG4714 Nucleoporin [Nuclear s 98.8 7.2E-08 1.6E-12 90.6 12.3 166 130-298 82-254 (319)
306 COG5170 CDC55 Serine/threonine 98.8 1.8E-07 3.9E-12 89.9 14.9 161 178-343 169-366 (460)
307 PRK02888 nitrous-oxide reducta 98.8 3.6E-06 7.8E-11 92.0 25.9 344 195-619 68-452 (635)
308 KOG0882 Cyclophilin-related pe 98.8 4.9E-07 1.1E-11 91.6 17.7 275 180-513 8-314 (558)
309 PF13360 PQQ_2: PQQ-like domai 98.7 5.9E-06 1.3E-10 84.1 24.6 220 112-349 2-235 (238)
310 PF13360 PQQ_2: PQQ-like domai 98.7 1.5E-05 3.4E-10 81.0 27.4 216 35-262 2-237 (238)
311 PF06433 Me-amine-dh_H: Methyl 98.7 9.3E-05 2E-09 75.1 31.6 293 161-517 17-333 (342)
312 PF08450 SGL: SMP-30/Gluconola 98.7 5.7E-05 1.2E-09 77.0 31.3 192 143-344 5-213 (246)
313 KOG1897 Damage-specific DNA bi 98.7 0.0016 3.6E-08 73.6 54.2 524 25-587 368-942 (1096)
314 PRK02888 nitrous-oxide reducta 98.6 4.5E-06 9.7E-11 91.3 22.3 134 432-576 284-450 (635)
315 KOG2066 Vacuolar assembly/sort 98.6 1.1E-06 2.3E-11 95.9 17.4 180 425-629 40-233 (846)
316 KOG2695 WD40 repeat protein [G 98.6 1.2E-07 2.6E-12 92.7 9.1 154 444-607 232-401 (425)
317 PF06433 Me-amine-dh_H: Methyl 98.6 1.6E-05 3.4E-10 80.6 23.9 271 247-598 17-331 (342)
318 KOG3617 WD40 and TPR repeat-co 98.6 1.1E-06 2.5E-11 95.5 16.3 111 185-300 19-133 (1416)
319 PF00400 WD40: WD domain, G-be 98.6 1.4E-07 3E-12 64.3 6.2 39 547-585 1-39 (39)
320 PF07433 DUF1513: Protein of u 98.6 2.1E-05 4.6E-10 78.8 23.7 197 425-629 5-247 (305)
321 KOG1645 RING-finger-containing 98.6 4E-06 8.7E-11 84.1 18.2 165 163-332 175-348 (463)
322 KOG3617 WD40 and TPR repeat-co 98.5 5.2E-06 1.1E-10 90.6 17.6 114 225-346 16-133 (1416)
323 KOG1920 IkappaB kinase complex 98.5 0.0017 3.6E-08 75.2 38.1 275 54-343 16-364 (1265)
324 KOG1832 HIV-1 Vpr-binding prot 98.5 1.4E-07 3.1E-12 102.8 5.9 171 171-352 1091-1263(1516)
325 PF07433 DUF1513: Protein of u 98.5 9.8E-05 2.1E-09 74.1 25.3 221 56-288 4-276 (305)
326 cd00216 PQQ_DH Dehydrogenases 98.5 0.00055 1.2E-08 77.1 33.7 175 430-611 222-450 (488)
327 PF00400 WD40: WD domain, G-be 98.4 7.3E-07 1.6E-11 60.7 6.5 39 171-209 1-39 (39)
328 KOG1275 PAB-dependent poly(A) 98.4 3.9E-06 8.4E-11 92.7 15.0 183 102-296 146-340 (1118)
329 cd00216 PQQ_DH Dehydrogenases 98.4 0.00017 3.7E-09 81.1 28.7 194 152-351 62-326 (488)
330 KOG2695 WD40 repeat protein [G 98.4 9E-07 2E-11 86.7 8.7 123 425-556 253-387 (425)
331 KOG3621 WD40 repeat-containing 98.4 3.2E-05 7E-10 83.6 20.8 197 141-347 37-247 (726)
332 KOG1645 RING-finger-containing 98.4 9.6E-06 2.1E-10 81.5 15.4 93 249-347 175-269 (463)
333 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00024 5.3E-09 76.5 27.6 304 190-575 1-345 (353)
334 KOG2114 Vacuolar assembly/sort 98.4 0.00013 2.7E-09 80.9 24.5 196 141-344 27-243 (933)
335 KOG1920 IkappaB kinase complex 98.3 0.0012 2.6E-08 76.3 32.7 242 224-547 68-324 (1265)
336 KOG2114 Vacuolar assembly/sort 98.3 0.00014 3E-09 80.5 23.9 207 232-513 31-252 (933)
337 KOG3621 WD40 repeat-containing 98.3 7.7E-05 1.7E-09 80.8 21.5 118 181-299 33-155 (726)
338 KOG1275 PAB-dependent poly(A) 98.3 1.3E-05 2.8E-10 88.7 15.7 178 24-209 145-340 (1118)
339 PF08596 Lgl_C: Lethal giant l 98.3 0.00023 5E-09 76.3 23.9 278 316-627 3-333 (395)
340 PF14583 Pectate_lyase22: Olig 98.2 0.00091 2E-08 69.5 26.5 181 144-331 42-254 (386)
341 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.0034 7.3E-08 70.9 33.4 61 496-556 441-501 (527)
342 PF04053 Coatomer_WDAD: Coatom 98.2 0.0013 2.8E-08 71.7 27.0 204 114-340 3-219 (443)
343 KOG2066 Vacuolar assembly/sort 98.2 7.5E-05 1.6E-09 82.0 17.2 184 93-298 39-233 (846)
344 COG3391 Uncharacterized conser 98.2 0.0045 9.7E-08 67.2 31.2 279 249-611 13-311 (381)
345 PF04053 Coatomer_WDAD: Coatom 98.1 0.00096 2.1E-08 72.7 25.3 182 425-628 69-261 (443)
346 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0013 2.8E-08 70.9 26.4 289 160-535 22-347 (353)
347 PF11768 DUF3312: Protein of u 98.1 0.021 4.5E-07 61.8 33.7 76 472-548 257-332 (545)
348 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0048 1E-07 69.7 30.9 165 447-612 272-517 (527)
349 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0046 1E-07 67.5 29.0 110 425-557 217-326 (410)
350 PF06977 SdiA-regulated: SdiA- 98.0 0.0025 5.5E-08 63.3 23.9 214 224-500 21-246 (248)
351 PF08596 Lgl_C: Lethal giant l 98.0 0.0012 2.6E-08 70.9 23.2 242 270-576 3-325 (395)
352 PF11768 DUF3312: Protein of u 98.0 0.014 2.9E-07 63.2 29.1 115 225-345 206-330 (545)
353 PF03178 CPSF_A: CPSF A subuni 98.0 0.0016 3.5E-08 69.2 23.0 179 436-624 42-260 (321)
354 PF06977 SdiA-regulated: SdiA- 97.9 0.0037 8E-08 62.2 23.3 185 423-616 20-239 (248)
355 PF03178 CPSF_A: CPSF A subuni 97.9 0.0062 1.3E-07 64.8 27.0 218 114-342 3-263 (321)
356 PF08553 VID27: VID27 cytoplas 97.9 0.00088 1.9E-08 76.8 20.9 135 159-297 502-646 (794)
357 PF14583 Pectate_lyase22: Olig 97.9 0.018 4E-07 60.0 27.9 315 253-627 16-379 (386)
358 PF04841 Vps16_N: Vps16, N-ter 97.9 0.018 3.8E-07 63.1 29.6 194 77-281 63-272 (410)
359 PF00780 CNH: CNH domain; Int 97.9 0.015 3.3E-07 60.3 28.2 244 235-556 6-266 (275)
360 KOG1008 Uncharacterized conser 97.9 5.8E-06 1.3E-10 87.9 2.1 202 425-635 57-281 (783)
361 COG3391 Uncharacterized conser 97.9 0.032 6.9E-07 60.7 31.1 285 163-525 13-308 (381)
362 COG0823 TolB Periplasmic compo 97.9 0.00044 9.6E-09 75.0 16.3 186 425-620 193-391 (425)
363 COG0823 TolB Periplasmic compo 97.7 0.001 2.2E-08 72.2 16.5 167 161-335 173-346 (425)
364 KOG1008 Uncharacterized conser 97.6 3.3E-05 7.1E-10 82.4 3.3 205 226-504 58-275 (783)
365 PF08553 VID27: VID27 cytoplas 97.6 0.0026 5.7E-08 73.0 18.6 191 55-254 429-646 (794)
366 PF02897 Peptidase_S9_N: Proly 97.6 0.07 1.5E-06 59.2 30.1 116 184-301 126-261 (414)
367 KOG4640 Anaphase-promoting com 97.6 0.00024 5.3E-09 76.1 9.4 94 514-608 19-115 (665)
368 PF02897 Peptidase_S9_N: Proly 97.6 0.057 1.2E-06 59.9 29.1 104 227-332 126-244 (414)
369 PF00780 CNH: CNH domain; Int 97.6 0.039 8.5E-07 57.3 25.5 195 425-631 36-257 (275)
370 KOG4640 Anaphase-promoting com 97.5 0.0004 8.6E-09 74.6 9.6 95 181-278 20-115 (665)
371 PF14655 RAB3GAP2_N: Rab3 GTPa 97.5 0.085 1.8E-06 56.7 26.5 90 186-278 6-118 (415)
372 COG3386 Gluconolactonase [Carb 97.4 0.025 5.5E-07 58.5 21.4 238 229-534 29-274 (307)
373 PF05694 SBP56: 56kDa selenium 97.4 0.097 2.1E-06 55.2 25.0 184 429-617 134-392 (461)
374 COG3490 Uncharacterized protei 97.3 0.09 1.9E-06 51.5 21.3 274 213-543 58-346 (366)
375 KOG2395 Protein involved in va 97.3 0.0098 2.1E-07 62.9 15.9 142 152-298 346-500 (644)
376 smart00320 WD40 WD40 repeats. 97.3 0.00081 1.7E-08 44.8 5.6 39 547-585 2-40 (40)
377 COG3386 Gluconolactonase [Carb 97.3 0.12 2.6E-06 53.6 23.7 206 112-333 46-274 (307)
378 PF07995 GSDH: Glucose / Sorbo 97.2 0.24 5.1E-06 52.7 26.7 73 510-582 247-330 (331)
379 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.016 3.5E-07 48.5 13.7 98 145-251 10-110 (111)
380 TIGR03074 PQQ_membr_DH membran 97.2 0.76 1.7E-05 54.1 38.1 110 152-265 195-354 (764)
381 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.027 5.8E-07 47.3 14.6 101 227-339 2-109 (111)
382 KOG1898 Splicing factor 3b, su 97.2 0.65 1.4E-05 54.0 29.8 129 195-323 551-696 (1205)
383 COG3204 Uncharacterized protei 97.1 0.074 1.6E-06 52.6 19.1 121 224-345 85-211 (316)
384 PRK13616 lipoprotein LpqB; Pro 97.1 0.057 1.2E-06 61.6 21.5 185 139-339 351-563 (591)
385 PRK13616 lipoprotein LpqB; Pro 97.1 0.052 1.1E-06 61.9 20.8 176 160-344 328-525 (591)
386 PF05096 Glu_cyclase_2: Glutam 97.1 0.34 7.3E-06 48.2 23.4 183 425-618 45-250 (264)
387 smart00320 WD40 WD40 repeats. 97.0 0.0024 5.3E-08 42.4 5.8 39 171-209 2-40 (40)
388 PF15390 DUF4613: Domain of un 97.0 0.83 1.8E-05 49.9 26.8 153 93-256 19-187 (671)
389 COG3490 Uncharacterized protei 96.9 0.28 6E-06 48.2 20.5 121 170-295 57-186 (366)
390 PF14655 RAB3GAP2_N: Rab3 GTPa 96.9 0.039 8.5E-07 59.2 16.5 89 176-264 302-407 (415)
391 COG3204 Uncharacterized protei 96.9 0.21 4.5E-06 49.6 19.7 165 178-344 82-263 (316)
392 KOG2444 WD40 repeat protein [G 96.7 0.002 4.4E-08 60.7 4.9 143 154-300 33-179 (238)
393 PF05096 Glu_cyclase_2: Glutam 96.7 0.72 1.6E-05 45.9 22.5 178 98-287 49-249 (264)
394 KOG2395 Protein involved in va 96.7 0.074 1.6E-06 56.5 16.4 140 485-628 344-499 (644)
395 PF05694 SBP56: 56kDa selenium 96.6 0.42 9.1E-06 50.7 20.8 199 152-352 88-350 (461)
396 PF14870 PSII_BNR: Photosynthe 96.6 1.1 2.4E-05 46.2 31.0 270 55-341 15-301 (302)
397 COG3292 Predicted periplasmic 96.6 1 2.2E-05 48.9 23.8 145 140-294 167-314 (671)
398 PRK13684 Ycf48-like protein; P 96.5 1.4 3.1E-05 46.8 28.7 272 56-342 45-329 (334)
399 KOG2444 WD40 repeat protein [G 96.5 0.0081 1.8E-07 56.8 7.1 103 485-587 69-177 (238)
400 PHA02713 hypothetical protein; 96.5 0.12 2.7E-06 59.1 18.0 190 152-349 305-538 (557)
401 KOG2079 Vacuolar assembly/sort 96.4 0.0095 2.1E-07 68.4 8.5 102 192-297 98-202 (1206)
402 PF09384 UTP15_C: UTP15 C term 96.4 0.018 3.9E-07 52.5 8.5 110 775-900 35-146 (148)
403 COG5276 Uncharacterized conser 96.3 1.3 2.8E-05 43.9 31.8 235 56-301 42-288 (370)
404 PHA02713 hypothetical protein; 96.3 0.28 6.2E-06 56.2 19.6 218 37-268 273-545 (557)
405 KOG2079 Vacuolar assembly/sort 96.3 0.12 2.5E-06 59.9 15.6 112 93-211 89-203 (1206)
406 COG3292 Predicted periplasmic 96.2 1.8 4E-05 47.1 23.2 357 181-629 164-531 (671)
407 PF14727 PHTB1_N: PTHB1 N-term 96.2 2.4 5.3E-05 45.9 30.0 143 152-298 38-204 (418)
408 KOG4499 Ca2+-binding protein R 96.2 1.1 2.3E-05 42.9 18.9 50 428-485 215-264 (310)
409 PF10647 Gmad1: Lipoprotein Lp 96.1 0.49 1.1E-05 48.0 18.5 151 183-336 25-187 (253)
410 PF10647 Gmad1: Lipoprotein Lp 96.1 1.5 3.3E-05 44.4 22.0 117 226-345 25-145 (253)
411 PF12894 Apc4_WD40: Anaphase-p 96.1 0.022 4.8E-07 39.8 5.7 34 181-215 11-44 (47)
412 PF08625 Utp13: Utp13 specific 96.1 0.023 5E-07 50.9 7.4 69 827-895 61-130 (141)
413 COG5276 Uncharacterized conser 96.1 1.7 3.8E-05 43.1 31.1 272 55-343 85-368 (370)
414 TIGR03074 PQQ_membr_DH membran 96.0 4.9 0.00011 47.6 41.0 193 102-300 193-479 (764)
415 KOG4499 Ca2+-binding protein R 95.9 1.7 3.7E-05 41.7 19.5 141 475-616 109-272 (310)
416 TIGR02604 Piru_Ver_Nterm putat 95.7 0.36 7.9E-06 52.3 16.5 143 475-619 14-204 (367)
417 KOG4441 Proteins containing BT 95.7 0.64 1.4E-05 53.2 18.8 139 190-337 282-439 (571)
418 TIGR02604 Piru_Ver_Nterm putat 95.7 4.1 8.8E-05 44.2 24.8 66 269-336 14-91 (367)
419 PF14870 PSII_BNR: Photosynthe 95.6 3.3 7.1E-05 42.8 26.0 148 425-584 145-301 (302)
420 KOG2280 Vacuolar assembly/sort 95.5 1.6 3.6E-05 49.1 20.1 211 225-463 44-255 (829)
421 PLN00033 photosystem II stabil 95.5 4.7 0.0001 43.7 30.6 150 183-341 240-396 (398)
422 PF12234 Rav1p_C: RAVE protein 95.4 0.39 8.5E-06 54.3 15.5 111 516-629 30-156 (631)
423 KOG3616 Selective LIM binding 95.4 0.8 1.7E-05 50.9 17.0 70 554-628 334-403 (1636)
424 KOG4441 Proteins containing BT 95.3 1.1 2.3E-05 51.4 19.0 228 103-346 285-548 (571)
425 PF15390 DUF4613: Domain of un 95.3 6 0.00013 43.6 28.9 150 182-343 20-185 (671)
426 KOG3630 Nuclear pore complex, 95.3 0.26 5.6E-06 57.5 13.4 150 425-575 101-261 (1405)
427 PF08728 CRT10: CRT10; InterP 95.2 1 2.2E-05 51.6 17.7 150 436-586 49-245 (717)
428 PRK10115 protease 2; Provision 95.2 9.1 0.0002 45.3 32.4 60 225-288 127-191 (686)
429 PHA03098 kelch-like protein; P 95.2 0.66 1.4E-05 53.4 17.1 187 101-298 293-511 (534)
430 PRK13684 Ycf48-like protein; P 95.2 5.4 0.00012 42.5 29.6 149 425-585 173-329 (334)
431 PF12894 Apc4_WD40: Anaphase-p 95.1 0.074 1.6E-06 37.2 5.4 35 513-548 9-43 (47)
432 PF07995 GSDH: Glucose / Sorbo 94.9 6.2 0.00014 41.9 23.4 64 558-621 253-328 (331)
433 KOG1916 Nuclear protein, conta 94.9 0.026 5.6E-07 63.5 4.1 156 471-630 129-324 (1283)
434 KOG1896 mRNA cleavage and poly 94.9 12 0.00026 44.9 42.3 147 437-587 1047-1213(1366)
435 PF10433 MMS1_N: Mono-function 94.8 9.3 0.0002 43.6 40.5 392 140-567 46-503 (504)
436 PHA03098 kelch-like protein; P 94.7 0.94 2E-05 52.2 16.9 186 152-346 296-513 (534)
437 PRK10115 protease 2; Provision 94.7 12 0.00027 44.2 32.9 117 182-302 127-259 (686)
438 KOG2377 Uncharacterized conser 94.6 0.9 2E-05 47.7 14.0 157 170-333 5-172 (657)
439 PF12234 Rav1p_C: RAVE protein 94.6 0.74 1.6E-05 52.1 14.6 108 477-586 32-155 (631)
440 PF10168 Nup88: Nuclear pore c 94.3 12 0.00026 44.0 24.0 26 182-207 85-110 (717)
441 PF14727 PHTB1_N: PTHB1 N-term 94.3 9.9 0.00021 41.4 29.7 258 25-297 36-359 (418)
442 KOG3630 Nuclear pore complex, 94.2 0.44 9.6E-06 55.7 11.8 188 428-617 45-262 (1405)
443 KOG2280 Vacuolar assembly/sort 93.6 5.4 0.00012 45.2 18.2 200 33-236 61-271 (829)
444 KOG1900 Nuclear pore complex, 93.5 19 0.00042 43.8 23.6 163 159-347 97-275 (1311)
445 PF03022 MRJP: Major royal jel 93.5 8.4 0.00018 39.9 19.0 159 477-637 3-223 (287)
446 COG3823 Glutamine cyclotransfe 93.2 4.3 9.3E-05 38.3 14.1 176 102-287 55-247 (262)
447 PF02333 Phytase: Phytase; In 93.2 14 0.0003 39.4 21.8 200 141-345 57-291 (381)
448 KOG1898 Splicing factor 3b, su 93.1 23 0.00051 42.0 36.8 87 511-597 533-628 (1205)
449 KOG2377 Uncharacterized conser 93.0 13 0.00028 39.6 18.8 118 424-547 66-187 (657)
450 COG5167 VID27 Protein involved 93.0 2.2 4.9E-05 45.6 13.5 142 152-299 480-633 (776)
451 TIGR03118 PEPCTERM_chp_1 conse 92.9 12 0.00025 38.0 25.3 236 270-567 24-307 (336)
452 PF08728 CRT10: CRT10; InterP 92.8 4.8 0.0001 46.3 17.1 104 238-344 115-246 (717)
453 TIGR03118 PEPCTERM_chp_1 conse 92.6 13 0.00028 37.7 23.3 242 226-525 24-307 (336)
454 KOG2247 WD40 repeat-containing 92.4 0.024 5.2E-07 59.5 -1.4 134 141-281 38-172 (615)
455 KOG3616 Selective LIM binding 92.0 6.2 0.00013 44.3 15.9 78 472-552 335-412 (1636)
456 COG3823 Glutamine cyclotransfe 91.7 6.1 0.00013 37.4 13.2 161 445-616 67-246 (262)
457 PF13449 Phytase-like: Esteras 91.4 22 0.00047 37.8 21.4 161 425-586 20-248 (326)
458 PF14761 HPS3_N: Hermansky-Pud 91.4 11 0.00024 36.3 15.0 103 194-300 29-165 (215)
459 KOG2247 WD40 repeat-containing 91.3 0.024 5.2E-07 59.6 -2.8 148 184-340 37-184 (615)
460 PF08801 Nucleoporin_N: Nup133 91.1 10 0.00022 42.0 17.5 168 60-257 29-221 (422)
461 PHA02790 Kelch-like protein; P 91.1 6.7 0.00014 44.3 16.1 131 152-289 320-456 (480)
462 PF10313 DUF2415: Uncharacteri 91.0 1.1 2.3E-05 30.4 5.7 32 182-213 1-35 (43)
463 PF14781 BBS2_N: Ciliary BBSom 90.8 11 0.00024 33.2 13.6 121 431-553 5-133 (136)
464 PF07569 Hira: TUP1-like enhan 90.7 1.1 2.4E-05 44.1 8.2 63 565-629 18-95 (219)
465 PHA02790 Kelch-like protein; P 90.7 11 0.00024 42.5 17.3 180 24-214 270-473 (480)
466 PF14781 BBS2_N: Ciliary BBSom 90.7 11 0.00024 33.1 13.2 107 152-263 11-133 (136)
467 TIGR03606 non_repeat_PQQ dehyd 90.7 21 0.00045 39.4 18.5 138 478-615 33-246 (454)
468 PF02333 Phytase: Phytase; In 90.6 27 0.00058 37.3 20.6 197 391-596 69-300 (381)
469 COG5167 VID27 Protein involved 90.5 9.8 0.00021 41.0 15.0 147 484-634 477-637 (776)
470 PF10168 Nup88: Nuclear pore c 90.4 6 0.00013 46.4 15.1 27 424-450 84-110 (717)
471 COG4257 Vgb Streptogramin lyas 90.4 20 0.00044 35.6 22.8 234 181-504 61-305 (353)
472 PF14761 HPS3_N: Hermansky-Pud 90.1 19 0.00041 34.8 17.9 104 153-259 30-167 (215)
473 KOG1916 Nuclear protein, conta 89.6 0.45 9.7E-06 54.2 4.8 151 427-586 186-373 (1283)
474 PF10395 Utp8: Utp8 family; I 89.4 46 0.00099 38.2 22.0 151 473-629 128-305 (670)
475 PF10313 DUF2415: Uncharacteri 89.4 1.5 3.3E-05 29.7 5.3 33 225-257 1-35 (43)
476 PF14779 BBS1: Ciliary BBSome 89.1 22 0.00049 35.5 15.6 136 25-166 29-255 (257)
477 COG4590 ABC-type uncharacteriz 89.1 2.3 5E-05 44.7 9.1 163 472-637 218-394 (733)
478 KOG4460 Nuclear pore complex, 88.9 9.8 0.00021 41.2 13.6 29 424-452 103-131 (741)
479 COG4257 Vgb Streptogramin lyas 88.9 27 0.00058 34.8 23.5 243 224-547 61-307 (353)
480 PF10433 MMS1_N: Mono-function 88.6 50 0.0011 37.7 37.9 392 153-629 2-476 (504)
481 COG5290 IkappaB kinase complex 88.6 30 0.00066 39.6 17.6 92 475-567 247-346 (1243)
482 COG4590 ABC-type uncharacteriz 88.5 12 0.00025 39.8 13.6 238 99-344 76-346 (733)
483 TIGR03548 mutarot_permut cycli 88.1 39 0.00084 35.8 20.1 136 152-289 74-233 (323)
484 TIGR02276 beta_rpt_yvtn 40-res 88.0 2.2 4.7E-05 28.9 5.9 41 567-607 1-42 (42)
485 PF07569 Hira: TUP1-like enhan 87.7 4.3 9.4E-05 40.0 9.9 74 511-587 8-95 (219)
486 PF13449 Phytase-like: Esteras 87.3 44 0.00095 35.5 23.6 107 426-533 86-232 (326)
487 TIGR03547 muta_rot_YjhT mutatr 87.1 47 0.001 35.6 21.2 60 247-307 168-234 (346)
488 PF11635 Med16: Mediator compl 86.8 57 0.0012 39.2 20.3 76 424-499 259-345 (753)
489 PRK14131 N-acetylneuraminic ac 85.4 60 0.0013 35.3 20.6 40 248-288 190-230 (376)
490 COG5290 IkappaB kinase complex 85.2 42 0.0009 38.6 16.4 38 6-43 104-141 (1243)
491 PLN02153 epithiospecifier prot 85.2 58 0.0012 34.9 20.9 133 152-288 87-260 (341)
492 PF11725 AvrE: Pathogenicity f 85.1 35 0.00077 42.9 17.1 153 179-345 360-517 (1774)
493 PLN02193 nitrile-specifier pro 85.1 72 0.0016 35.9 21.8 132 152-288 230-386 (470)
494 COG1520 FOG: WD40-like repeat 84.9 63 0.0014 35.1 21.7 221 103-342 68-303 (370)
495 PF07250 Glyoxal_oxid_N: Glyox 83.9 41 0.00088 33.6 14.4 145 205-353 48-206 (243)
496 PF03022 MRJP: Major royal jel 83.7 58 0.0013 33.7 23.2 166 447-616 35-253 (287)
497 PF11715 Nup160: Nucleoporin N 82.8 4.8 0.0001 46.5 9.0 72 525-596 156-257 (547)
498 PF10395 Utp8: Utp8 family; I 82.6 1E+02 0.0022 35.7 23.8 113 186-298 32-159 (670)
499 KOG1983 Tomosyn and related SN 82.3 1.4E+02 0.003 37.1 21.1 73 472-549 196-268 (993)
500 KOG1983 Tomosyn and related SN 82.1 42 0.0009 41.4 16.6 70 516-591 199-268 (993)
No 1
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2.1e-148 Score=1163.63 Aligned_cols=880 Identities=44% Similarity=0.755 Sum_probs=801.2
Q ss_pred CcccccceeeEeecCCcceeEEEcCCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEEcCeEEEE
Q 002564 1 MGIFEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNHIAVV 80 (907)
Q Consensus 1 ~~~~~~~r~~g~v~~~~~~~~~~~~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~I~vw 80 (907)
|.||+|||++|+|+|+|||.+...++..++++|+|+++++||+++++++++++.++..|+|+|-+.+.+|+|+|+.|++|
T Consensus 21 S~iFapfR~lG~vsn~VP~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~vs~~lp~~I~alas~~~~vy~A~g~~i~~~ 100 (910)
T KOG1539|consen 21 SDIFAPFRALGYVSNGVPFRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFVSKPLPDKITALASDKDYVYVASGNKIYAY 100 (910)
T ss_pred cccccchhhhceecCCCceeeeecCceEEEEEecCceEEEEeccceEEEEecCCCCCceEEEEecCceEEEecCcEEEEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeeEEE-EcccccceEEEEeeCCEEEEEecCCcEEEEecCCCCcc-ccceeeEecCCCcccEEEEcCCCCCCEEEEEe
Q 002564 81 KRAHQVAT-WSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEEN-LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGS 158 (907)
Q Consensus 81 ~~~~~~~~-~~~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s 158 (907)
.+++.+.. +.+|.+.|.-+.+.|.+++++..++.+.||+..+.+.. ...+.-.+....+ ++..+||++|+|+++.|+
T Consensus 101 ~rgk~i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~-Ital~HP~TYLNKIvvGs 179 (910)
T KOG1539|consen 101 ARGKHIRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDF-ITALLHPSTYLNKIVVGS 179 (910)
T ss_pred EccceEEEEeccccceEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeeccCCc-eeeEecchhheeeEEEee
Confidence 99977666 89999999999999999999999999999999985221 1112223333444 788999999999999999
Q ss_pred cCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCC
Q 002564 159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238 (907)
Q Consensus 159 ~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~ 238 (907)
.+|.+++||+++++.+++++++...|+++..+|.-+++|+|..+|+|.++|++.++.+.+|.+. .+.|++++|..||.+
T Consensus 180 ~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d-~g~VtslSFrtDG~p 258 (910)
T KOG1539|consen 180 SQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD-WGRVTSLSFRTDGNP 258 (910)
T ss_pred cCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc-ccceeEEEeccCCCe
Confidence 9999999999999999999999999999999999999999999999999999999999999987 799999999999999
Q ss_pred EEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCe
Q 002564 239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL 318 (907)
Q Consensus 239 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~ 318 (907)
+|++|+..|.+.+||++..+.+..+..+|.+.|....|.|..+.+++++.|+++++|-++++++.+++++.+.||+.|+.
T Consensus 259 ~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~ 338 (910)
T KOG1539|consen 259 LLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPS 338 (910)
T ss_pred eEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCch
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccch-hhhcccCceeEeeecccccccccceEEEe
Q 002564 319 CIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK-EEELKLKPVIAFDCAEIRERDWCNVVTCH 396 (907)
Q Consensus 319 ~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 396 (907)
+++|+. +|..+++++.|++++.+++....+.+++.+.+..+++++.+.. ....+++|+..+++...|+.+|++++++|
T Consensus 339 ~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h 418 (910)
T KOG1539|consen 339 CIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAH 418 (910)
T ss_pred heeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEe
Confidence 999995 8999999999999999999999999999987777777777777 78899999999999999999999999999
Q ss_pred eCCceEEEEEeeeceecceeeecCCCC--CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcC
Q 002564 397 MDTAQAYVWRLQNFVLGEHILRPCPEN--PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHN 474 (907)
Q Consensus 397 ~~~~~v~~w~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~ 474 (907)
.++..+++|++++...|.+.+.+.+.. ...++++++++||++.++|++.|+|.+||+++|..+..|.. .++|.
T Consensus 419 ~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~-----~~ah~ 493 (910)
T KOG1539|consen 419 KGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGD-----SPAHK 493 (910)
T ss_pred cCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccccc-----Ccccc
Confidence 999999999999999999999887443 36789999999999999999999999999999999999842 24899
Q ss_pred CcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee
Q 002564 475 GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE 554 (907)
Q Consensus 475 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~ 554 (907)
++|++++.+..++.+++++.+|.+++||+++..++..+.....+.++.++....++|++.+|-.|+++|+.+.+.++.|.
T Consensus 494 ~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~ 573 (910)
T KOG1539|consen 494 GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW 573 (910)
T ss_pred CceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeeccccccc
Q 002564 555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSG 634 (907)
Q Consensus 555 ~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~~~~~ 634 (907)
||.+.|++++|||||+||++++.|++||+||++++.+++.+....+++++.|||+|++|||+|.|+++|++|.|+++|..
T Consensus 574 gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF~~ 653 (910)
T KOG1539|consen 574 GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLFKS 653 (910)
T ss_pred ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchhHhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred CCCCccCCCCCcceeecCCCccCCCCccCCCCCCCCCccCCCCCCCCCCCCCccccccCceeecCCchhhhhhccchHHH
Q 002564 635 DSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDII 714 (907)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tls~~p~~~~~~l~~l~~i 714 (907)
++.+ .++.++.+..+.+|+..+..++++... ..+..++.-.|.+++|++++|+|||.+|+|||++|+|||.|
T Consensus 654 vs~r-~~~~~~~~~~v~lPst~~~~d~e~~~~-------tLE~~~e~i~y~~~eQldeeLvTlS~lp~Srwq~Ll~LelI 725 (910)
T KOG1539|consen 654 VSTR-AIPADYVPSWVMLPSTCDEDDDEDDEV-------TLESNDEDIKYSSPEQLDEELVTLSKLPRSRWQNLLNLELI 725 (910)
T ss_pred cccc-ccCcccccceeecCcccccccchhhhh-------hhhccccccccCChhHhChhhhhhccCcHHHhhhcccHHHH
Confidence 9888 998888889999999655544322111 11111233489999999999999999999999999999999
Q ss_pred hhhCCCCCCCCCCCCCCccccCCCCCCcccccC-CCCCCcccchhhhccCCCCCCCCccHHHHHHhhccccCChHHHHHH
Q 002564 715 KARNKPIEPPKKPEKAPFFLPSVPSLSGEILFK-PSESTKEDTESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDY 793 (907)
Q Consensus 715 ~~r~kp~~~~~~~~~~pffl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 793 (907)
|+||||+||||+|++||||||+.+. ++ +.+. +..++.++++.+.+.......+.+|.|.++|+++..+++|..+++|
T Consensus 726 k~RnkPke~PK~pkkaPFFLp~~~s-~g-~v~e~~~~~~~~~~~~~~~ik~~~~L~~es~F~~~Lre~~~s~~~~~~~~~ 803 (910)
T KOG1539|consen 726 KKRNKPKEPPKKPKKAPFFLPKVPS-EG-LVLETPAAEELNKEEDENKIKKLGLLELESSFTTLLREGKDSKDFLDAFAL 803 (910)
T ss_pred HhcCCCCCCCCccccCCcccccCCc-cc-ccccCcchhhhcchhhhhhhhccccccccchHHHHHhhccccccHHHHHHH
Confidence 9999999999999999999999885 22 2222 1111112222222223334556789999999999999999999999
Q ss_pred HHhCCCCcchheeccccccCCCccccccCcchHHHHHHHHHHHHHHHhcCCCHHhHHHHHHHHHHhhccccccch---HH
Q 002564 794 IKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHT---KL 870 (907)
Q Consensus 794 l~~~~~s~~~~ei~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~~~~~~---~~ 870 (907)
|++++||+||+|||+|.. .+++++++..|+++|.++|++++||||+||||++|+|+||..|.+++ .|
T Consensus 804 L~~~~psaiD~eiRsL~d----------~~~~~~~~~~Fi~~l~~~l~~k~nFEL~qa~~slf~K~H~~~l~~~~~~~dl 873 (910)
T KOG1539|consen 804 LKNLSPSAIDFEIRSLND----------AGETIEEMVIFIKMLTQMLKTKRNFELVQAYMSLFLKSHGLVLWNHEGPEDL 873 (910)
T ss_pred HHhcCcchheeehhhhhc----------cCcchHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhhhhhhccCCCchhH
Confidence 999999999999999962 14568999999999999999999999999999999999999998766 89
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccceeeehhccccCC
Q 002564 871 QDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL 907 (907)
Q Consensus 871 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (907)
.+.|++|.++|+++|++|++||.||+|+|+|++|+++
T Consensus 874 ~e~l~~~~~v~~e~wq~le~l~~~~mgvl~~l~nall 910 (910)
T KOG1539|consen 874 TEELQNWEEVQSEEWQRLEELFLYCMGVLAFLKNALL 910 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHhhccC
Confidence 9999999999999999999999999999999999874
No 2
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.4e-59 Score=483.58 Aligned_cols=657 Identities=16% Similarity=0.270 Sum_probs=546.4
Q ss_pred cCCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEE--cCeEEEEeCCeeE----------EEEcc
Q 002564 24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY--GNHIAVVKRAHQV----------ATWSR 91 (907)
Q Consensus 24 ~~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~--g~~I~vw~~~~~~----------~~~~~ 91 (907)
+++..++++..+|-..+-+......++.. ....+|.|+.|||||+++|. |+-+.+|..++.+ +++.|
T Consensus 65 p~g~lllavdE~g~~~lvs~~~r~Vlh~f-~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g 143 (893)
T KOG0291|consen 65 PDGTLLLAVDERGRALLVSLLSRSVLHRF-NFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLG 143 (893)
T ss_pred CCceEEEEEcCCCcEEEEecccceeeEEE-eecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecC
Confidence 66777777777777777777666655554 46889999999999998766 5569999865542 34889
Q ss_pred cccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecC
Q 002564 92 HSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS 169 (907)
Q Consensus 92 h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~ 169 (907)
|...|+++.| |.++|++++.|-++++|.++..+-.. ...+..|...+..|.|..+. ..+++.+.||.+.+|...
T Consensus 144 ~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~--~~~l~gHkd~VvacfF~~~~--~~l~tvskdG~l~~W~~~ 219 (893)
T KOG0291|consen 144 HFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLF--TYALNGHKDYVVACFFGANS--LDLYTVSKDGALFVWTCD 219 (893)
T ss_pred CccceeEEEeccCCceEEeccccceEEEEEeccccccc--eEeccCCCcceEEEEeccCc--ceEEEEecCceEEEEEec
Confidence 9999999998 68899999999999999998876522 45566788899999999998 789999999999999765
Q ss_pred C-----------------------CeE-----------EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCce
Q 002564 170 T-----------------------KKK-----------LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE 215 (907)
Q Consensus 170 ~-----------------------~~~-----------~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~ 215 (907)
. ++. .+-+......|+|.+|++..+.||+|...|...+|.+..-..
T Consensus 220 ~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~l 299 (893)
T KOG0291|consen 220 LRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNL 299 (893)
T ss_pred CCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceE
Confidence 1 111 112233358899999999999999999999999999999999
Q ss_pred EEEEeecCCCCEEEEEEecCCCCEEEEEeC-CCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEE
Q 002564 216 LVTFTHSMRGAVTALAFSSDGQPLLASGAS-SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM 294 (907)
Q Consensus 216 ~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~v 294 (907)
++.+... ..+|..++|+..|. .+|.|+. -|.+-||++.+...+...+ +|...+++++++|||+++++|+.||.|++
T Consensus 300 ih~LSis-~~~I~t~~~N~tGD-WiA~g~~klgQLlVweWqsEsYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 300 IHSLSIS-DQKILTVSFNSTGD-WIAFGCSKLGQLLVWEWQSESYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKV 376 (893)
T ss_pred EEEeecc-cceeeEEEecccCC-EEEEcCCccceEEEEEeeccceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEE
Confidence 9999876 67899999999999 7777764 4899999999999888888 99999999999999999999999999999
Q ss_pred EEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccC
Q 002564 295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 374 (907)
Q Consensus 295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (907)
||...+ -+..++..|+..|+.+.|+..|+.+++++.||+|+.||+.....-+.+..
T Consensus 377 Wn~~Sg----fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-------------------- 432 (893)
T KOG0291|consen 377 WNTQSG----FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-------------------- 432 (893)
T ss_pred EeccCc----eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC--------------------
Confidence 987654 68889999999999999999999999999999999999987665555432
Q ss_pred ceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCC-cEEEEeC
Q 002564 375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-WIERFNL 453 (907)
Q Consensus 375 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-~i~i~d~ 453 (907)
..+....|++..|.|..+++|+.|. .|.+|++
T Consensus 433 -----------------------------------------------P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~ 465 (893)
T KOG0291|consen 433 -----------------------------------------------PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSV 465 (893)
T ss_pred -----------------------------------------------CCceeeeEEEEcCCCCEEEeeccceEEEEEEEe
Confidence 1235678999999999999999887 8999999
Q ss_pred CCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCC-CceeeeeecCcceeEEEEeeCCCEEEE
Q 002564 454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG-RDLKSRWEVGCSLVKIVYHRVNGLLAT 532 (907)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~i~~~~~s~~~~~la~ 532 (907)
++|+.+..+. +|.++|.+++|+|.+..|++++.|.+||+||+-. .....+++....+..++|+|+|+.||+
T Consensus 466 qTGqllDiLs--------GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaV 537 (893)
T KOG0291|consen 466 QTGQLLDILS--------GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAV 537 (893)
T ss_pred ecCeeeehhc--------CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEE
Confidence 9999999885 9999999999999999999999999999999764 456778888899999999999999999
Q ss_pred EeCCCeEEEEEcccceeEEEeec--------------------CCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCcee
Q 002564 533 VADDLVIRLFDVVALRMVRKFEG--------------------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 592 (907)
Q Consensus 533 ~~~dg~I~v~d~~~~~~~~~~~~--------------------h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~ 592 (907)
++-||.|.+||++.+..+..+.| .....+.+++|+||.+|++|+....|++||++++-++
T Consensus 538 aTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 538 ATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLL 617 (893)
T ss_pred EEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhee
Confidence 99999999999987766544332 2356899999999999999999999999999887665
Q ss_pred eEeee------------------------------------------------------CC---ceEEEEECCCCceEEE
Q 002564 593 DAIHV------------------------------------------------------DV---SITALSLSPNMDVLAT 615 (907)
Q Consensus 593 ~~~~~------------------------------------------------------~~---~v~~l~~spdg~~lat 615 (907)
+.++. .. .|.++.|||.|+.+|+
T Consensus 618 kkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAa 697 (893)
T KOG0291|consen 618 KKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAA 697 (893)
T ss_pred eeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeee
Confidence 55431 01 2789999999999999
Q ss_pred EEecCCeEEEeecccc--cccCCCCccCCCCCcceeecCCCccCCCCccCCCCCCCCCccCCCCCCCCCCCCCccccccC
Q 002564 616 AHVDQNGVYLWVNRCM--FSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPD 693 (907)
Q Consensus 616 ~~~d~~~i~lW~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (907)
++..| +.||.+... |.|..+- ..++|+
T Consensus 698 atTEG--l~IYsld~~~~FDPf~LD--------------------------------------------~~vTPe----- 726 (893)
T KOG0291|consen 698 ATTEG--LLIYSLDTTILFDPFDLD--------------------------------------------VDVTPE----- 726 (893)
T ss_pred ecccc--eEEEecCCceEEcccccc--------------------------------------------cccCHH-----
Confidence 99987 777775322 2222110 000010
Q ss_pred ceeecCCchhhhhhccchHHHhhhCCCCCCCCCCCCCCccccCCCCCCcccccCCCCCCcccchhhhccCCCCCCCCccH
Q 002564 694 LVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIPVSQ 773 (907)
Q Consensus 694 l~tls~~p~~~~~~l~~l~~i~~r~kp~~~~~~~~~~pffl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (907)
.+++ | + .+..
T Consensus 727 -------------------~v~~-------------a---------l-----------------------------~~qe 736 (893)
T KOG0291|consen 727 -------------------SVRE-------------A---------L-----------------------------REQE 736 (893)
T ss_pred -------------------HHHH-------------H---------H-----------------------------hcch
Confidence 0000 0 0 1234
Q ss_pred HHHHHhhccccCChHHHHHHHHhCCCCcchheeccccccCCCccccccCcchHHHHHHHHHHHHHHHhcCCCHHhHHHHH
Q 002564 774 FIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVI 853 (907)
Q Consensus 774 ~~~~l~~~~~~~~~~~~~~~l~~~~~s~~~~ei~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (907)
|.+.|.-+++-|+|..+-+.|.+.++.-|.+=..+|.+ .++.++|++|...|...++.|+...|+
T Consensus 737 y~~AlvmslRLNe~~lI~evlesvp~~~Ie~V~~~Lp~---------------~y~erll~~l~~~l~~s~HieF~l~W~ 801 (893)
T KOG0291|consen 737 YLKALVMSLRLNEYKLIKEVLESVPIKDIELVASSLPT---------------AYLERLLKALSRFLENSPHIEFYLRWL 801 (893)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhCChhhhhhhhhcCcH---------------HHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 66777777788999999999999999998887777764 899999999999999999999999999
Q ss_pred HHHHHhhccccccch-HHHHHHHHHHHHHHHHHHHHHHhhccceeeehhcc
Q 002564 854 RLFLKIHGETVRCHT-KLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLS 903 (907)
Q Consensus 854 ~~~l~~h~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (907)
+.+|..||..|.... .+..+|..|++.+.+..+.|-++..+|-.+++||-
T Consensus 802 ~~il~~hG~~~~~~~~~~~~~~~~lqk~i~r~~~~l~kl~~~Nky~L~~lv 852 (893)
T KOG0291|consen 802 RAILTYHGSSLKRRAETLLPALTSLQKSIVRHIDDLSKLCSLNKYTLRYLV 852 (893)
T ss_pred HHHHHHhhhhhhccceehhhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 999999999998765 67789999999999999999999999999999983
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.7e-57 Score=470.68 Aligned_cols=705 Identities=19% Similarity=0.264 Sum_probs=555.4
Q ss_pred cCCeEEEEEEeCCeEEEEEcCcceEE-Eec-CCCCcceEEEEEecCeEEEEEcCe---EEEEe--CCeeEEEEcc-cccc
Q 002564 24 LGTENFVTVSVGKAFHIYNCAKLNLV-LVG-PQLPKKIRALASYRDYTFAAYGNH---IAVVK--RAHQVATWSR-HSAK 95 (907)
Q Consensus 24 ~~~~~~~~~~~~~~v~iwd~~~~~~~-~~~-~~~~~~I~~la~~~~~~~~a~g~~---I~vw~--~~~~~~~~~~-h~~~ 95 (907)
++++.|++.+ ++.|.+-|+.+++.. ... +..+..|+++++.||...+.+..+ +++|. +++.++.++. |++|
T Consensus 29 ~nG~~L~t~~-~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~P 107 (775)
T KOG0319|consen 29 SNGQHLYTAC-GDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAP 107 (775)
T ss_pred CCCCEEEEec-CceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCC
Confidence 5566666555 577889999998874 332 667788999999999777655333 88886 5777888887 9999
Q ss_pred eEEEEee--CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe-
Q 002564 96 VNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK- 172 (907)
Q Consensus 96 V~~l~~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~- 172 (907)
|..++++ |..|++|+.||.++|||+..+.. ...+.++++.+.+..|+|.-....|++|..|+++++||+.+..
T Consensus 108 vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~----th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t 183 (775)
T KOG0319|consen 108 VITMAFDPTGTLLATGGADGRVKVWDIKNGYC----THSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT 183 (775)
T ss_pred eEEEEEcCCCceEEeccccceEEEEEeeCCEE----EEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch
Confidence 9999985 78899999999999999999998 8899999999999999999866778999999999999998655
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecC-----CCCEEEEEeCCC
Q 002564 173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-----GQPLLASGASSG 247 (907)
Q Consensus 173 ~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d-----g~~~l~sg~~dg 247 (907)
+++.+..|.+.|++++|++|+..+++++.|..+.|||+...+...++... ..+.++.+-++ |. ++.+.+.+|
T Consensus 184 cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y--e~~E~vv~l~~~~~~~~~-~~~TaG~~g 260 (775)
T KOG0319|consen 184 CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLY--ESLESVVRLREELGGKGE-YIITAGGSG 260 (775)
T ss_pred HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechh--hheeeEEEechhcCCcce-EEEEecCCc
Confidence 48889999999999999999999999999999999999877777776653 56888888877 56 888999999
Q ss_pred cEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CC
Q 002564 248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NG 326 (907)
Q Consensus 248 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g 326 (907)
.+++||.+++++...........+..+...+....++....|..+.++|.+.. ++.+.+-|..+.|..++|-. +.
T Consensus 261 ~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l----~i~k~ivG~ndEI~Dm~~lG~e~ 336 (775)
T KOG0319|consen 261 VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL----TIVKQIVGYNDEILDMKFLGPEE 336 (775)
T ss_pred eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEcccc----EEehhhcCCchhheeeeecCCcc
Confidence 99999999998887766333444777777777777778888999999987765 66777789999999999975 77
Q ss_pred CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEE
Q 002564 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 406 (907)
Q Consensus 327 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~ 406 (907)
++++.++..+.+|+++..+..+. +-.++. ..+.+++. .....+++.+..+..+++|.
T Consensus 337 ~~laVATNs~~lr~y~~~~~~c~--ii~GH~----------------e~vlSL~~-----~~~g~llat~sKD~svilWr 393 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPTSYCQ--IIPGHT----------------EAVLSLDV-----WSSGDLLATGSKDKSVILWR 393 (775)
T ss_pred ceEEEEeCCCceEEEecCCCceE--EEeCch----------------hheeeeee-----cccCcEEEEecCCceEEEEE
Confidence 89999999999999987665543 222111 11222220 11124677778889999999
Q ss_pred eeeceecceeeecCCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccceee-eccccccccCcCCcEEEEEEcC
Q 002564 407 LQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSY-LDMSERSNYAHNGEVVGVACDS 484 (907)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~s~ 484 (907)
+.+............+|...+.+++++..+ .++++++.|+++++|++...+..... ..........|...|++++++|
T Consensus 394 ~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ 473 (775)
T KOG0319|consen 394 LNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP 473 (775)
T ss_pred ecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC
Confidence 976666666667778899999999997766 78999999999999999873222211 0001112358999999999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeE
Q 002564 485 TNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF 563 (907)
Q Consensus 485 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l 563 (907)
+.++++||+.|.+.++|++........+..+ ..+.++.|+|..+.+|+++.|++|+||.+.+..++++|.||+..|..+
T Consensus 474 ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra 553 (775)
T KOG0319|consen 474 NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRA 553 (775)
T ss_pred CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEee
Confidence 9999999999999999999999999999877 899999999999999999999999999999999999999999999999
Q ss_pred EECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCc-eEEEEECCCCceEEEEEecCCeEEEeecccccccCCCCccCC
Q 002564 564 CFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYA 642 (907)
Q Consensus 564 ~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~~~~~~~~~~~~~~~~ 642 (907)
.|-.+|+.|+|++.||-|++|++.++.|+..+..|.. |++++-+|.+.+++||+.|++ |.+|.-.+
T Consensus 554 ~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~-i~~wkD~T------------ 620 (775)
T KOG0319|consen 554 SFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGR-IIFWKDVT------------ 620 (775)
T ss_pred eeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeE-EEEeecCc------------
Confidence 9999999999999999999999999999999988776 999999999999999999995 99997210
Q ss_pred CCCcceeecCCCccCCCCccCCCCCCCCCccCCCCCCCCCCCCCccccccCceeecCCchhhhhhccchHHHhhhCCCCC
Q 002564 643 SGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIE 722 (907)
Q Consensus 643 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tls~~p~~~~~~l~~l~~i~~r~kp~~ 722 (907)
+. +..+ +.+..++ + .-+=|+|-|+-- + |-
T Consensus 621 -e~------------------~~~e------e~~K~~e--------a------------ieq~QeL~n~l~--~--~~-- 649 (775)
T KOG0319|consen 621 -EE------------------EQNE------EQEKREE--------A------------IEQEQELENLLS--Q--KR-- 649 (775)
T ss_pred -HH------------------HHHH------HHHHHHH--------H------------HHHHHHHHHHHh--h--hh--
Confidence 00 0000 0000000 0 001111111111 0 00
Q ss_pred CCCCCCCCCccccCCCCCCcccccCCCCCCcccchhhhccCCCCCCCCccHHHHHHhhccccCChHHHHH----HHHhCC
Q 002564 723 PPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTD----YIKSLS 798 (907)
Q Consensus 723 ~~~~~~~~pffl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~l~~~~ 798 (907)
-.+-|-|.- .-+....+++ ..++.+
T Consensus 650 -----~~~A~~LA~----------------------------------------------tLd~P~~~f~vi~~~~r~r~ 678 (775)
T KOG0319|consen 650 -----YTKAFVLAL----------------------------------------------TLDKPHLVFTVINALYRERD 678 (775)
T ss_pred -----hHHHHHhHh----------------------------------------------hccCchhHHHHHHHHHhcCC
Confidence 001111110 0001122222 334567
Q ss_pred CCcchheeccccccCCCccccccCcchHHHHHHHHHHHHHHHhcCCCHHhHHHHHHHHHHhhccc-cccchHHHHHHHHH
Q 002564 799 PSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGET-VRCHTKLQDKARKL 877 (907)
Q Consensus 799 ~s~~~~ei~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-~~~~~~~~~~~~~l 877 (907)
|..++.+|+.|.. +....+|+|...+=.-.|.--..|..|..+|+.|-.. |.+.|...+.++.|
T Consensus 679 ~e~l~~av~~L~~---------------dq~~~Ll~~~~~WnTnsk~c~vaQ~vL~~~l~~~~p~el~~~~g~~~~~e~l 743 (775)
T KOG0319|consen 679 PEELGQAVFRLNE---------------DQPEALLQFVVKWNTNSKTCHVAQRVLYEILKRVDPEELVRWPGSGEVVEAL 743 (775)
T ss_pred cHHHHHHHHHhhh---------------hhHHHHHHHHHHhcCCcchhHHHHHHHHHHHhccChHHhhcccchHHHHHhh
Confidence 8899999999985 7889999999999888889999999999999987543 56788999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 002564 878 LEVQSAVWQKIDKMFQ 893 (907)
Q Consensus 878 ~~~~~~~~~~~~~~~~ 893 (907)
....++-..|++++.+
T Consensus 744 ~PYtqRHf~Rid~~~~ 759 (775)
T KOG0319|consen 744 LPYTQRHFRRIDRLVQ 759 (775)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 9999999999999976
No 4
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.5e-56 Score=459.74 Aligned_cols=773 Identities=15% Similarity=0.213 Sum_probs=529.4
Q ss_pred cccceeeEeecCCcc---eeEEEcCCeEEEEEEeCCeEEEEEcCcceEEEec--CCCCcceEEEEEecCeEEEEEcC---
Q 002564 4 FEPYKAIGYITSSVP---FSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVG--PQLPKKIRALASYRDYTFAAYGN--- 75 (907)
Q Consensus 4 ~~~~r~~g~v~~~~~---~~~~~~~~~~~~~~~~~~~v~iwd~~~~~~~~~~--~~~~~~I~~la~~~~~~~~a~g~--- 75 (907)
|.|--+.|.|.+... |.+...+....+++++.-.+.+||++++...... ......|+|+..+++...+|.|.
T Consensus 8 ye~~~~fgviaS~~aN~~~~~~~~~~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDG 87 (888)
T KOG0306|consen 8 YEPAAVFGVIASEVANINFVVKRSGKGRAVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADG 87 (888)
T ss_pred ccccceeeeeecCccceeEEEeecCCCcEEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCc
Confidence 566677888876433 3333344577888888899999999999544322 23456899999999999887764
Q ss_pred eEEEEeCC--eeEEEEcccccceEEEEee--CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCC
Q 002564 76 HIAVVKRA--HQVATWSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYL 151 (907)
Q Consensus 76 ~I~vw~~~--~~~~~~~~h~~~V~~l~~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 151 (907)
.|++|+.. ....++.||...|+.+.++ |..|+|||.|+.|.+||+-...- ...+.+|...+....|..+.
T Consensus 88 sVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G----l~rL~GHkd~iT~~~F~~~~-- 161 (888)
T KOG0306|consen 88 SVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG----LFRLRGHKDSITQALFLNGD-- 161 (888)
T ss_pred eEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEecccee----eEEeecchHHHhHHhccCCC--
Confidence 49999976 6677799999999999985 89999999999999999987766 66777888777777777766
Q ss_pred CEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCC------------ceEEEE
Q 002564 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD------------EELVTF 219 (907)
Q Consensus 152 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~------------~~~~~~ 219 (907)
+.+++.+.|+.|++||+++..|..+.-.|.+.|.++++.+ +.+++++.|+.+++|++... +...++
T Consensus 162 ~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 162 SFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred eEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeecccee
Confidence 7899999999999999999999999999999999999998 68999999999999999311 112222
Q ss_pred eecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceee-----------------------------------eeee
Q 002564 220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ-----------------------------------SVIR 264 (907)
Q Consensus 220 ~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~-----------------------------------~~~~ 264 (907)
....++..-.++..++++ +++.-+.|..+.++.+.+.+.+ ..++
T Consensus 240 ~rqsk~R~i~l~~d~s~r-~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir 318 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDR-FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIR 318 (888)
T ss_pred eeccCCceeEEeecCccc-EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhee
Confidence 222244455555556666 6666666777777766432110 0000
Q ss_pred cccccCeEEEEEecCCC---EEEEEcCCCcEEEEEccCCCCC------cceeEeccCCCCCCeEEEEecCCCEEEEEeCC
Q 002564 265 EAHDNAIISLHFFANEP---VLMSASADNSIKMWIFDTTDGD------PRLLRFRSGHSAPPLCIRFYANGRHILSAGQD 335 (907)
Q Consensus 265 ~~h~~~V~~l~~~~~~~---~l~s~~~d~~i~vw~~~~~~~~------~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~d 335 (907)
-...+.++.|.|++. .|+. -.++++..|.++..... ...+...... ..|.+++++.+...+++|+ .
T Consensus 319 --~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR-~dVRsl~vS~d~~~~~Sga-~ 393 (888)
T KOG0306|consen 319 --TSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHR-SDVRSLCVSSDSILLASGA-G 393 (888)
T ss_pred --chhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccch-hheeEEEeecCceeeeecC-C
Confidence 123455555555432 2222 34556666655541111 0011111111 2356666665554444443 3
Q ss_pred CCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecce
Q 002564 336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415 (907)
Q Consensus 336 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~ 415 (907)
+++++|+..+.++.+.+..+.. .+..+ -.|+..+..+...|.+.++|+....+
T Consensus 394 ~SikiWn~~t~kciRTi~~~y~-------------------l~~~F-----vpgd~~Iv~G~k~Gel~vfdlaS~~l--- 446 (888)
T KOG0306|consen 394 ESIKIWNRDTLKCIRTITCGYI-------------------LASKF-----VPGDRYIVLGTKNGELQVFDLASASL--- 446 (888)
T ss_pred CcEEEEEccCcceeEEeccccE-------------------EEEEe-----cCCCceEEEeccCCceEEEEeehhhh---
Confidence 4566666666666666655311 01111 12344555555666666666655433
Q ss_pred eeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC-----CccceeeeccccccccCcCCcEEEEEEcCCCCEEE
Q 002564 416 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS-----GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI 490 (907)
Q Consensus 416 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~ 490 (907)
+...+.|.+.+.+++.+||+..+++|+.|.+|++|+..- |.....+... ....-.-...|.|+.+|||+++|+
T Consensus 447 -~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~-~~rtLel~ddvL~v~~Spdgk~La 524 (888)
T KOG0306|consen 447 -VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK-HTRTLELEDDVLCVSVSPDGKLLA 524 (888)
T ss_pred -hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeec-cceEEeccccEEEEEEcCCCcEEE
Confidence 223346779999999999999999999999999999642 2221111100 000113457899999999999999
Q ss_pred EEecCCeEEEEECCCCceeeeeec-CcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCC
Q 002564 491 SAGYHGDIKVWDFKGRDLKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDG 569 (907)
Q Consensus 491 s~~~dg~i~iwd~~~~~~~~~~~~-~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg 569 (907)
.+-.|.+++||-+++-+..-.+.+ .-||.|+..|||++++++|+.|.+|+||-++-|.|.+.+-+|.+.|.++.|-|..
T Consensus 525 VsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~ 604 (888)
T KOG0306|consen 525 VSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKT 604 (888)
T ss_pred EEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccc
Confidence 999999999999999887666554 4899999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeCCCcEEEEEcCCCceeeEeeeCC-ceEEEEECCCCceEEEEEecCCeEEEeecccccccCCCCccCCCCCcce
Q 002564 570 KWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIV 648 (907)
Q Consensus 570 ~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~-~v~~l~~spdg~~lat~~~d~~~i~lW~~~~~~~~~~~~~~~~~~~~~~ 648 (907)
..+.++|.|+.|+-||-..-++++.+.+|. .|++++.+|+|.++++++.|. +|++|.- .+++.
T Consensus 605 ~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~-sIRlwE~---------------tde~~ 668 (888)
T KOG0306|consen 605 HLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDK-SIRLWER---------------TDEIL 668 (888)
T ss_pred eeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCc-eeEeeec---------------cCcce
Confidence 999999999999999999999999998765 499999999999999999999 6999983 12211
Q ss_pred eecCCCccCCCCccCCCCCCCCCccCCCCCCCCCCCCCccccccCceeecCCchhhhhhccchHHHhhhCCCCCCCCCCC
Q 002564 649 SVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPE 728 (907)
Q Consensus 649 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tls~~p~~~~~~l~~l~~i~~r~kp~~~~~~~~ 728 (907)
-+.... +.|.+++.| .-...+++ ...+...++..-.+ ++ |..|..|..|
T Consensus 669 ~lEeek-------E~ErEe~yE--~l~~~~e~----~~~~~~~~g~~~~~----sk--------------kTieSvk~aE 717 (888)
T KOG0306|consen 669 ILEEEK-------EGEREEEYE--TLLASEEV----VAGDGSADGDAGVA----SK--------------KTIESVKSAE 717 (888)
T ss_pred eeehhh-------hhhhHHHHH--Hhhhhccc----ccCCCcccccccch----hh--------------hhhHHHHHHH
Confidence 111100 000000000 00000000 00000000000000 00 1111111110
Q ss_pred CCCccccCCCCCCcccccCCCCCCcccchhhhccCCCCCCCCccHHHHHHhhccccCChHHHHHHHHhCCCCcchheecc
Q 002564 729 KAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRM 808 (907)
Q Consensus 729 ~~pffl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~s~~~~ei~~ 808 (907)
+.= .-.+....+..+. +..... .+..|+...+.. ..-.-+++.|+..-.|.+|..+-.
T Consensus 718 ~i~----------ea~di~~~e~~~~------ee~~~g--~P~npll~a~~k----s~e~yi~dtl~~Ir~S~Ld~aLll 775 (888)
T KOG0306|consen 718 RIL----------EALDIGREELTQL------EEYSPG--HPHNPLLNAYNK----SPEKYIVDTLMKIRASELDDALLL 775 (888)
T ss_pred HHH----------HHHHHHHHHHHhH------HhhcCC--CCCcHHHHHhcC----CHHHHHHHHHHhcchhhhhhhhee
Confidence 000 0000000000000 000001 133444444442 222668999999999999988777
Q ss_pred ccccCCCccccccCcchHHHHHHHHHHHHHHHhcCCCHHhHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHH
Q 002564 809 LQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKI 888 (907)
Q Consensus 809 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 888 (907)
|. .++...+|+|+.+.++.+...||+...+-.++|+|-+.|++++++++.|+++++.+++.-+++
T Consensus 776 lP---------------fS~V~~vl~~i~~~~q~~~~veLv~rv~~fL~rih~~~it~~~~~kp~l~~i~s~l~~~v~q~ 840 (888)
T KOG0306|consen 776 LP---------------FSYVLDVLKFIDECIQRKSKVELVCRVLFFLLRIHHKQITAHKNMKPLLEKIKSKLREIVEQL 840 (888)
T ss_pred cc---------------HHHHHHHHHHHHHHHcCCCcceeEeeeeeehhhhhhhhhccccchHHHHHHHHHHHHHHHHHh
Confidence 64 588999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccceeeehhcc
Q 002564 889 DKMFQSARCVVSFLS 903 (907)
Q Consensus 889 ~~~~~~~~~~~~~~~ 903 (907)
++.+++|+.-++||+
T Consensus 841 rdv~G~NlagL~~l~ 855 (888)
T KOG0306|consen 841 RDVLGFNLAGLSLLK 855 (888)
T ss_pred hhhhhhhhhHHHHHH
Confidence 999999999999986
No 5
>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=100.00 E-value=6.5e-59 Score=449.19 Aligned_cols=214 Identities=42% Similarity=0.705 Sum_probs=187.3
Q ss_pred CCCCCccccccCceeecCCchhhhhhccchHHHhhhCCCCCCCCCCCCCCccccCCCCCCcccc--cCCCCCCcccch-h
Q 002564 682 FGLPTFKQQIPDLVTLSLLPKSQWQSLINLDIIKARNKPIEPPKKPEKAPFFLPSVPSLSGEIL--FKPSESTKEDTE-S 758 (907)
Q Consensus 682 ~~~~~~~~~~~~l~tls~~p~~~~~~l~~l~~i~~r~kp~~~~~~~~~~pffl~~~~~~~~~~~--~~~~~~~~~~~~-~ 758 (907)
..|.+++||+++|||||++|++||++|+|||+||+||||+||||+|++|||||||++++++.|. ......++...+ .
T Consensus 17 ~~~~s~~Qi~~~LiTLS~lP~srWq~Ll~LD~IK~RNKPkeppKkPe~APFFLpt~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (237)
T PF04192_consen 17 IEYSSPEQIDEDLITLSGLPRSRWQNLLNLDVIKERNKPKEPPKKPEKAPFFLPTLPGLEPRFQDAFESEEEEEEEEERS 96 (237)
T ss_pred cccCChhhhCccceeeccCCHHHHHHHHHHHHHHHhCCCCCCCCCcCCCCcccCcCCCCCccccccccccccccchhhhh
Confidence 4589999999999999999999999999999999999999999999999999999999998872 222221111111 1
Q ss_pred hhccCC-CCCCCCccHHHHHHhhccccCChHHHHHHHHhCCCCcchheeccccccCCCccccccCcchHHHHHHHHHHHH
Q 002564 759 LKVGNK-TKPDIPVSQFIQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLI 837 (907)
Q Consensus 759 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~s~~~~ei~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (907)
...++. ......+|+|+++|.++...+||.++++|||+|+||+||+|||+|++.. ++++.+|..||+||+
T Consensus 97 ~~~~~~~~~~~~~~s~f~~lL~~~~~~~dy~~~~~~LkslsPS~iDlEIRsL~~~~---------~~~~~~l~~Fl~~l~ 167 (237)
T PF04192_consen 97 RLRKLKKDNSLDFESEFTRLLRSASESEDYSEFLEYLKSLSPSAIDLEIRSLSPES---------GGSYEELVSFLRFLT 167 (237)
T ss_pred hhhhcccccCccccCHHHHHHHhhcccccHHHHHHHHHhCChhHHHHHHHhccCcc---------CCcHHHHHHHHHHHH
Confidence 111222 2334578999999999999999999999999999999999999999633 456899999999999
Q ss_pred HHHhcCCCHHhHHHHHHHHHHhhccccccchH---HHHHHHHHHHHHHHHHHHHHHhhccceeeehhccc
Q 002564 838 HEISCRNNFEFIQAVIRLFLKIHGETVRCHTK---LQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSN 904 (907)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~l~~h~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 904 (907)
++|++++||||+||||++|||+||++|++.+. |++.|++|+++|++.|.+|+++|+||+|+|+|+||
T Consensus 168 ~~L~~~~dfElvQa~l~vFLk~Hgd~i~~~~~~~~L~~~l~~l~~~q~~~w~~L~~l~~~~~cvv~fl~~ 237 (237)
T PF04192_consen 168 YRLKSRRDFELVQAYLSVFLKVHGDVIMESEEEEELREALEELREAQESEWKRLDDLFQYCSCVVSFLRS 237 (237)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcC
Confidence 99999999999999999999999999999888 99999999999999999999999999999999986
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-49 Score=398.94 Aligned_cols=563 Identities=15% Similarity=0.194 Sum_probs=442.0
Q ss_pred CCcceeEEEcCCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEEcCe---EEEEeCCe---eEEE
Q 002564 15 SSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAH---QVAT 88 (907)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~---I~vw~~~~---~~~~ 88 (907)
.++|..+-......-+.++.++++.+-+++++..+.+...|...++-..++|.|-|+|+|+. |+||+... .++.
T Consensus 18 Rg~~~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKn 97 (603)
T KOG0318|consen 18 RGVPIIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKN 97 (603)
T ss_pred CCcceEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeee
Confidence 34454444434445566778999999999999999888899999999999999999999875 99999643 3443
Q ss_pred -EcccccceEEEEe--eCCEEEEEecC--CcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcE
Q 002564 89 -WSRHSAKVNLLLL--FGEHILSIDID--GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL 163 (907)
Q Consensus 89 -~~~h~~~V~~l~~--~g~~l~s~~~d--g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i 163 (907)
++.-.++|..|.| ++++|++.++- +-.+++-.+++.. +..+.+|...+.+|.|-|... -++++|+.|++|
T Consensus 98 ef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S----vGei~GhSr~ins~~~KpsRP-fRi~T~sdDn~v 172 (603)
T KOG0318|consen 98 EFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS----VGEITGHSRRINSVDFKPSRP-FRIATGSDDNTV 172 (603)
T ss_pred eeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCc----cceeeccceeEeeeeccCCCc-eEEEeccCCCeE
Confidence 7778899999997 58899988852 2234444445666 788999999999999999986 589999999999
Q ss_pred EEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEe--ecCCCCEEEEEEecCCCCEEE
Q 002564 164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT--HSMRGAVTALAFSSDGQPLLA 241 (907)
Q Consensus 164 ~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~--~~~~~~v~~l~fs~dg~~~l~ 241 (907)
.+|+=...+.-.++..|..-|.|+.|+|||.++|+++.||+|.+||-++|+.+..+. ..|++.|.+++|+||+. .++
T Consensus 173 ~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-~~~ 251 (603)
T KOG0318|consen 173 AFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-QFL 251 (603)
T ss_pred EEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-eEE
Confidence 999987788888899999999999999999999999999999999999999999997 24589999999999999 899
Q ss_pred EEeCCCcEEEEECCCceeeeeeecccc--cCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeE
Q 002564 242 SGASSGVISIWNLEKRRLQSVIREAHD--NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC 319 (907)
Q Consensus 242 sg~~dg~I~iwd~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~ 319 (907)
+++.|.+++|||+.+++++.++..+.. ..-..+-|- ...|++.+.+|.|.+++.+.. ..++.+.||...|++
T Consensus 252 T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~----~~~~~i~GHnK~ITa 325 (603)
T KOG0318|consen 252 TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP----SVLKVISGHNKSITA 325 (603)
T ss_pred EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC----ChhheecccccceeE
Confidence 999999999999999999999874443 344455565 458999999999999976654 356777899999999
Q ss_pred EEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCC
Q 002564 320 IRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT 399 (907)
Q Consensus 320 i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 399 (907)
+..++++++|++|+.||.|.-|+..++...+.....+ -..|..+... +...+++++.+
T Consensus 326 Ltv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h----------------~nqI~~~~~~-----~~~~~~t~g~D- 383 (603)
T KOG0318|consen 326 LTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGH----------------TNQIKGMAAS-----ESGELFTIGWD- 383 (603)
T ss_pred EEEcCCCCEEEeeccCceEEEEecCCccccccccccc----------------cceEEEEeec-----CCCcEEEEecC-
Confidence 9999999999999999999999998776554332211 1223333322 12344555544
Q ss_pred ceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEE
Q 002564 400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG 479 (907)
Q Consensus 400 ~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~ 479 (907)
.++++.++............ -.....+++..++|.++++.+.++.+.+-+...-.. ..-.-...+
T Consensus 384 d~l~~~~~~~~~~t~~~~~~---lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~------------~~~~y~~s~ 448 (603)
T KOG0318|consen 384 DTLRVISLKDNGYTKSEVVK---LGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSS------------IPIGYESSA 448 (603)
T ss_pred CeEEEEecccCcccccceee---cCCCceeEEEcCCCCEEEEEecCcEEEEecCCccee------------eccccccce
Confidence 45566655443332222111 123455899999998888887776554433322111 123345789
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCcee---eeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeec-
Q 002564 480 VACDSTNTLMISAGYHGDIKVWDFKGRDLK---SRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG- 555 (907)
Q Consensus 480 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~- 555 (907)
++++|++..++.|+.||.|++|.+....+. ...++.++|++++||||+.+||++...+.+.+||+.+++......+
T Consensus 449 vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~F 528 (603)
T KOG0318|consen 449 VAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAF 528 (603)
T ss_pred EEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeee
Confidence 999999999999999999999999986643 3456679999999999999999999999999999999887444444
Q ss_pred CCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeee--CCceEEEEECCCCceEEEEEecCCeEEEeec
Q 002564 556 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV--DVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (907)
Q Consensus 556 h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~--~~~v~~l~~spdg~~lat~~~d~~~i~lW~~ 628 (907)
|+.+|.+++|+|++.++||||.|-+|.||++......-.++. ...|+.+.|- |...|++++.|.+ |++|++
T Consensus 529 HtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~-iK~W~v 601 (603)
T KOG0318|consen 529 HTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDAN-IKVWNV 601 (603)
T ss_pred eeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEeccCcce-eEEecc
Confidence 999999999999999999999999999999987544433332 2339999996 4567889999994 999986
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-48 Score=391.43 Aligned_cols=515 Identities=17% Similarity=0.227 Sum_probs=408.0
Q ss_pred EcCCeEEEEEEeCCeEEEEEcCcceEEE--ecCCCCcceEEEEEecCeEEEEE-cC------eEEEEeCCeeEEEEcccc
Q 002564 23 RLGTENFVTVSVGKAFHIYNCAKLNLVL--VGPQLPKKIRALASYRDYTFAAY-GN------HIAVVKRAHQVATWSRHS 93 (907)
Q Consensus 23 ~~~~~~~~~~~~~~~v~iwd~~~~~~~~--~~~~~~~~I~~la~~~~~~~~a~-g~------~I~vw~~~~~~~~~~~h~ 93 (907)
.|.+.|++++...|+++|||...-..+. ..+...++|..++|+.|++.++. |. .+..||.+..+..+.||.
T Consensus 68 SPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhS 147 (603)
T KOG0318|consen 68 SPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHS 147 (603)
T ss_pred CCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccc
Confidence 3778899999999999999998744333 44778999999999999776655 42 299999999999999999
Q ss_pred cceEEEEee---CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCC
Q 002564 94 AKVNLLLLF---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST 170 (907)
Q Consensus 94 ~~V~~l~~~---g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~ 170 (907)
..|.++.+- .-+++||++|++|.+|+=...+. ..++..|..++.++.++|++ .++++++.||++.+||=++
T Consensus 148 r~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF----k~s~r~HskFV~~VRysPDG--~~Fat~gsDgki~iyDGkt 221 (603)
T KOG0318|consen 148 RRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF----KSSFREHSKFVNCVRYSPDG--SRFATAGSDGKIYIYDGKT 221 (603)
T ss_pred eeEeeeeccCCCceEEEeccCCCeEEEeeCCCeee----eecccccccceeeEEECCCC--CeEEEecCCccEEEEcCCC
Confidence 999999974 45799999999999998665555 55667788999999999999 8999999999999999999
Q ss_pred CeEEEEEc---CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCC--CCEEEEEEecCCCCEEEEEeC
Q 002564 171 KKKLYEFK---GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMR--GAVTALAFSSDGQPLLASGAS 245 (907)
Q Consensus 171 ~~~~~~~~---~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~--~~v~~l~fs~dg~~~l~sg~~ 245 (907)
|+.+..+. +|.+.|.+++|+||+..+++++.|.+++|||+.+.+.+.++..... ..-..+-|. +. .|++-+.
T Consensus 222 ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd-~lItVSl 298 (603)
T KOG0318|consen 222 GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KD-HLITVSL 298 (603)
T ss_pred ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CC-eEEEEEc
Confidence 99999998 8999999999999999999999999999999999999999987643 344556665 23 6888899
Q ss_pred CCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecC
Q 002564 246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325 (907)
Q Consensus 246 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 325 (907)
+|+|.+++.........+. +|...|+++..+|++.+|++|+.||.|.-|+...+.... ..-.+|...|.+++-+..
T Consensus 299 ~G~in~ln~~d~~~~~~i~-GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~---~~g~~h~nqI~~~~~~~~ 374 (603)
T KOG0318|consen 299 SGTINYLNPSDPSVLKVIS-GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR---LAGKGHTNQIKGMAASES 374 (603)
T ss_pred CcEEEEecccCCChhheec-ccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccc---cccccccceEEEEeecCC
Confidence 9999999999999888888 999999999999999999999999999999887654321 112579999999998864
Q ss_pred CCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEE
Q 002564 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 405 (907)
Q Consensus 326 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w 405 (907)
+ .+++++.|.++++.++........... .+...|. .++.. ..+...+++| ....+.+-
T Consensus 375 ~-~~~t~g~Dd~l~~~~~~~~~~t~~~~~---------------~lg~QP~-~lav~---~d~~~avv~~--~~~iv~l~ 432 (603)
T KOG0318|consen 375 G-ELFTIGWDDTLRVISLKDNGYTKSEVV---------------KLGSQPK-GLAVL---SDGGTAVVAC--ISDIVLLQ 432 (603)
T ss_pred C-cEEEEecCCeEEEEecccCccccccee---------------ecCCCce-eEEEc---CCCCEEEEEe--cCcEEEEe
Confidence 4 688999999999998865443222100 0000111 00000 0001112222 11112111
Q ss_pred EeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCC
Q 002564 406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST 485 (907)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 485 (907)
+...... . .-.....+++++|+++.+++|+.||.|++|.+..+....... ...|.++|++++++||
T Consensus 433 ~~~~~~~------~--~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~------~~~h~a~iT~vaySpd 498 (603)
T KOG0318|consen 433 DQTKVSS------I--PIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK------LLEHRAAITDVAYSPD 498 (603)
T ss_pred cCCccee------e--ccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceee------eecccCCceEEEECCC
Confidence 1111100 0 112567899999999999999999999999998876544322 1489999999999999
Q ss_pred CCEEEEEecCCeEEEEECCCCceee-eee-cCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccc-eeEEEeecCCCCeee
Q 002564 486 NTLMISAGYHGDIKVWDFKGRDLKS-RWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITD 562 (907)
Q Consensus 486 ~~~l~s~~~dg~i~iwd~~~~~~~~-~~~-~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~-~~~~~~~~h~~~I~~ 562 (907)
+.+|+++...+.+.+||..+.+... .+. |...|.+++|+|++.++|+|+-|-.|.||+++.. +.+....+|...|+.
T Consensus 499 ~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~ 578 (603)
T KOG0318|consen 499 GAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNS 578 (603)
T ss_pred CcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCcee
Confidence 9999999999999999999887632 223 5589999999999999999999999999999865 335555679988999
Q ss_pred EEECCCCcEEEEEeCCCcEEEEEcC
Q 002564 563 FCFSEDGKWLLSSGMDGSLRIWDVI 587 (907)
Q Consensus 563 l~fspdg~~l~s~s~Dg~I~vwd~~ 587 (907)
+.|-.+ ..|++++.|..|++|++.
T Consensus 579 v~wlde-~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 579 VAWLDE-STVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEecC-ceEEeccCcceeEEeccc
Confidence 999754 579999999999999974
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-47 Score=397.12 Aligned_cols=521 Identities=17% Similarity=0.233 Sum_probs=429.0
Q ss_pred CCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEE-cCe--EEEEe-CCeeEEEEcccccceEEEE
Q 002564 25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY-GNH--IAVVK-RAHQVATWSRHSAKVNLLL 100 (907)
Q Consensus 25 ~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~-g~~--I~vw~-~~~~~~~~~~h~~~V~~l~ 100 (907)
++.+-++.++|+.+.+||+++.+-....-.+...|++++.||+|.++.+ ..+ ..+-+ ..+-+...-.-..+|.++.
T Consensus 24 ~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~ 103 (893)
T KOG0291|consen 24 KDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIK 103 (893)
T ss_pred CCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEE
Confidence 5667788899999999999987665555567889999999999888755 332 22223 2332332222356788887
Q ss_pred e--eCCEEEEEecCCcEEEEecCCCCc-c---ccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeE-
Q 002564 101 L--FGEHILSIDIDGNMFIWAFKGIEE-N---LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK- 173 (907)
Q Consensus 101 ~--~g~~l~s~~~dg~v~vWd~~~~~~-~---~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~- 173 (907)
| +|.++|.+. .+.+.||....... . ....++...+...+.+.-|+.|. +.+++|+.|-++++|.++..+.
T Consensus 104 fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DS--r~l~~gsrD~s~rl~~v~~~k~~ 180 (893)
T KOG0291|consen 104 FSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDS--RLLVTGSRDLSARLFGVDGNKNL 180 (893)
T ss_pred ECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCC--ceEEeccccceEEEEEecccccc
Confidence 5 788888877 78899999876544 1 12245566677778888899999 8999999999999999987766
Q ss_pred -EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccC-----------------------Cce-----E-----EEE
Q 002564 174 -LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY-----------------------DEE-----L-----VTF 219 (907)
Q Consensus 174 -~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~-----------------------~~~-----~-----~~~ 219 (907)
.+.+.+|...|.++-|..+..-+.+.+.||.+.+|.... ++. . ..+
T Consensus 181 ~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ 260 (893)
T KOG0291|consen 181 FTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHY 260 (893)
T ss_pred ceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeee
Confidence 677899999999999999999999999999999998761 111 1 111
Q ss_pred eecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCC-CcEEEEEcc
Q 002564 220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-NSIKMWIFD 298 (907)
Q Consensus 220 ~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-~~i~vw~~~ 298 (907)
.......|++.+|++... +||+|-..|...+|.+....+++.+. -...+|..+.|+..|.+++.|+.. |.+-||++.
T Consensus 261 ln~~~~kvtaa~fH~~t~-~lvvgFssG~f~LyelP~f~lih~LS-is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq 338 (893)
T KOG0291|consen 261 LNQNSSKVTAAAFHKGTN-LLVVGFSSGEFGLYELPDFNLIHSLS-ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ 338 (893)
T ss_pred ecccccceeeeeccCCce-EEEEEecCCeeEEEecCCceEEEEee-cccceeeEEEecccCCEEEEcCCccceEEEEEee
Confidence 111236899999999877 99999999999999999999999998 566899999999999999998864 899999987
Q ss_pred CCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeE
Q 002564 299 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 378 (907)
Q Consensus 299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 378 (907)
.. ..+....+|...+++++|+|||+++++|+.||.|++||..++-+..++
T Consensus 339 sE----sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF-------------------------- 388 (893)
T KOG0291|consen 339 SE----SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF-------------------------- 388 (893)
T ss_pred cc----ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe--------------------------
Confidence 76 355666799999999999999999999999999999998765544443
Q ss_pred eeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 002564 379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS 458 (907)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~ 458 (907)
..|...++.+.|+..|+.+++.+-||+|+.||+.....
T Consensus 389 ------------------------------------------teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 389 ------------------------------------------TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred ------------------------------------------ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence 25679999999999999999999999999999999999
Q ss_pred ceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCC-eEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCC
Q 002564 459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-DIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADD 536 (907)
Q Consensus 459 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~d 536 (907)
.++|. ........|++.+|.|..++.|+.|. .|.+|++++|+++..+.++ +||.+++|+|++..||+++.|
T Consensus 427 fRTft-------~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD 499 (893)
T KOG0291|consen 427 FRTFT-------SPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD 499 (893)
T ss_pred eeeec-------CCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc
Confidence 98887 35566788999999999999998776 5999999999999999776 999999999999999999999
Q ss_pred CeEEEEEcccc-eeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeee------------------
Q 002564 537 LVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV------------------ 597 (907)
Q Consensus 537 g~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~------------------ 597 (907)
.+|++||+-.. ..+.++. +...++.++|+|||+-|++++.||.|.+||+..+..+..+.+
T Consensus 500 kTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~ 578 (893)
T KOG0291|consen 500 KTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN 578 (893)
T ss_pred ceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhh
Confidence 99999998755 3444554 778899999999999999999999999999988766644432
Q ss_pred ---CCceEEEEECCCCceEEEEEecCCeEEEeecccc
Q 002564 598 ---DVSITALSLSPNMDVLATAHVDQNGVYLWVNRCM 631 (907)
Q Consensus 598 ---~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~~ 631 (907)
....+.+++|+||.++++|+... .|++|+++..
T Consensus 579 sa~~K~Ftti~ySaDG~~IlAgG~sn-~iCiY~v~~~ 614 (893)
T KOG0291|consen 579 SAKGKTFTTICYSADGKCILAGGESN-SICIYDVPEG 614 (893)
T ss_pred cccCCceEEEEEcCCCCEEEecCCcc-cEEEEECchh
Confidence 13489999999999999999888 5999997643
No 9
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-50 Score=390.17 Aligned_cols=366 Identities=21% Similarity=0.335 Sum_probs=298.8
Q ss_pred eEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEE
Q 002564 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251 (907)
Q Consensus 172 ~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~i 251 (907)
++-..+.||.++|.|++|+|+|..|++|+.|.++++||+.+..+..+...| ...|.|++|+|||+ .||+|+.||.|++
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH-~~WVlcvawsPDgk-~iASG~~dg~I~l 183 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGH-KNWVLCVAWSPDGK-KIASGSKDGSIRL 183 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCC-ccEEEEEEECCCcc-hhhccccCCeEEE
Confidence 456678999999999999999999999999999999999999999999887 89999999999999 9999999999999
Q ss_pred EECCCceeeeeeecccccCeEEEEEec-----CCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCC
Q 002564 252 WNLEKRRLQSVIREAHDNAIISLHFFA-----NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 326 (907)
Q Consensus 252 wd~~~~~~~~~~~~~h~~~V~~l~~~~-----~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g 326 (907)
||..+|+.+..-..+|...|++++|.| ..++|++++.||+++|||+..+ .++..+.||+.+|+|++|-.+|
T Consensus 184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~----~~~~~lsgHT~~VTCvrwGG~g 259 (480)
T KOG0271|consen 184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG----TCVRTLSGHTASVTCVRWGGEG 259 (480)
T ss_pred ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc----eEEEEeccCccceEEEEEcCCc
Confidence 999999877666569999999999976 5679999999999999988765 6788899999999999998776
Q ss_pred CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEE
Q 002564 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 406 (907)
Q Consensus 327 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~ 406 (907)
++++++.|++|++|+...+...+++.
T Consensus 260 -liySgS~DrtIkvw~a~dG~~~r~lk----------------------------------------------------- 285 (480)
T KOG0271|consen 260 -LIYSGSQDRTIKVWRALDGKLCRELK----------------------------------------------------- 285 (480)
T ss_pred -eEEecCCCceEEEEEccchhHHHhhc-----------------------------------------------------
Confidence 89999999999999987766555443
Q ss_pred eeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC
Q 002564 407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486 (907)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 486 (907)
+|...|..++++.+-- |=+|. |+... .....+.... ..+-. -...+.-..+
T Consensus 286 ---------------GHahwvN~lalsTdy~-LRtga-------f~~t~-~~~~~~se~~---~~Al~--rY~~~~~~~~ 336 (480)
T KOG0271|consen 286 ---------------GHAHWVNHLALSTDYV-LRTGA-------FDHTG-RKPKSFSEEQ---KKALE--RYEAVLKDSG 336 (480)
T ss_pred ---------------ccchheeeeeccchhh-hhccc-------ccccc-ccCCChHHHH---HHHHH--HHHHhhccCc
Confidence 3445666666654311 01111 11000 0000000000 00000 0001111234
Q ss_pred CEEEEEecCCeEEEEECCC-Cceeeeee-cCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEE
Q 002564 487 TLMISAGYHGDIKVWDFKG-RDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC 564 (907)
Q Consensus 487 ~~l~s~~~dg~i~iwd~~~-~~~~~~~~-~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~ 564 (907)
..+++|+.|.++.+|+-.. .+++.... +..-|+.+.||||++++|+++-|..|++||..+|+.+.+|+||-+.|..++
T Consensus 337 erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva 416 (480)
T KOG0271|consen 337 ERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA 416 (480)
T ss_pred ceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence 7899999999999998654 34555554 448899999999999999999999999999999999999999999999999
Q ss_pred ECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCc-eEEEEECCCCceEEEEEecCCeEEEee
Q 002564 565 FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV 627 (907)
Q Consensus 565 fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~ 627 (907)
||.|.++|++||.|.++++||+.+.++..-+.+|.. |.++.|+|||..+++++.|. .+++|.
T Consensus 417 wsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdk-v~~lw~ 479 (480)
T KOG0271|consen 417 WSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDK-VLRLWR 479 (480)
T ss_pred eccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCce-EEEeec
Confidence 999999999999999999999999999999997765 99999999999999999999 599995
No 10
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.7e-49 Score=412.10 Aligned_cols=487 Identities=14% Similarity=0.208 Sum_probs=410.7
Q ss_pred cCCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEE--EEEcCe---EEEEeCC---eeEEEEcccccc
Q 002564 24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTF--AAYGNH---IAVVKRA---HQVATWSRHSAK 95 (907)
Q Consensus 24 ~~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~--~a~g~~---I~vw~~~---~~~~~~~~h~~~ 95 (907)
+.+..+++++.|+.++|||+..+.....+.+|++.|.++.|+|+..+ +++|.. +++||.. .++.++..|.+.
T Consensus 115 ~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~ 194 (775)
T KOG0319|consen 115 PTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSA 194 (775)
T ss_pred CCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhh
Confidence 66788999999999999999999999999999999999999999444 566543 9999954 236669999999
Q ss_pred eEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCC---CCCCEEEEEecCCcEEEEecCC
Q 002564 96 VNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPD---TYLNKVIVGSQEGSLQLWNIST 170 (907)
Q Consensus 96 V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~l~~~s~dg~i~iwd~~~ 170 (907)
|+++++ |+..+++++.|..|.|||+.+.+. .++++.-.... .+.+-++ +...++++++.+|.+++||.++
T Consensus 195 vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~----l~~lp~ye~~E-~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es 269 (775)
T KOG0319|consen 195 VTSLAFSEDSLELLSVGRDKVIIVWDLVQYKK----LKTLPLYESLE-SVVRLREELGGKGEYIITAGGSGVVQYWDSES 269 (775)
T ss_pred eeeeeeccCCceEEEeccCcEEEEeehhhhhh----hheechhhhee-eEEEechhcCCcceEEEEecCCceEEEEeccc
Confidence 999996 899999999999999999976665 44444333332 3334343 1115799999999999999999
Q ss_pred CeEEEEEcCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcE
Q 002564 171 KKKLYEFKGW-GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI 249 (907)
Q Consensus 171 ~~~~~~~~~h-~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I 249 (907)
+++++..+.. ...+..+...+....++..+.|..+.+||.++.+....+.+. .+.|..|+|-.....+||+++..+.+
T Consensus 270 ~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~-ndEI~Dm~~lG~e~~~laVATNs~~l 348 (775)
T KOG0319|consen 270 GKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGY-NDEILDMKFLGPEESHLAVATNSPEL 348 (775)
T ss_pred chhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCC-chhheeeeecCCccceEEEEeCCCce
Confidence 9988766543 344677777676667777788899999999999998888876 67899999976555599999999999
Q ss_pred EEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecC-CCE
Q 002564 250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-GRH 328 (907)
Q Consensus 250 ~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-g~~ 328 (907)
++|++.+..+. .+. +|...|.++....+|-+|+||+.|+++++|.++.......++....+|.+.|.+++++.. ..+
T Consensus 349 r~y~~~~~~c~-ii~-GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asf 426 (775)
T KOG0319|consen 349 RLYTLPTSYCQ-IIP-GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASF 426 (775)
T ss_pred EEEecCCCceE-EEe-CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccE
Confidence 99998887776 555 999999999966777899999999999999996666666677788899999999999773 468
Q ss_pred EEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEee
Q 002564 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408 (907)
Q Consensus 329 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~ 408 (907)
|+++|.|+++++|++...+..... ++ +
T Consensus 427 fvsvS~D~tlK~W~l~~s~~~~~~----------------------~~----------------~--------------- 453 (775)
T KOG0319|consen 427 FVSVSQDCTLKLWDLPKSKETAFP----------------------IV----------------L--------------- 453 (775)
T ss_pred EEEecCCceEEEecCCCccccccc----------------------ce----------------e---------------
Confidence 899999999999998763222110 00 0
Q ss_pred eceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCE
Q 002564 409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL 488 (907)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 488 (907)
........|...|.+++++|+.+.+++|+.|.+.++|++........+. +|...|.++.|+|..+.
T Consensus 454 ------~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs--------GH~RGvw~V~Fs~~dq~ 519 (775)
T KOG0319|consen 454 ------TCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS--------GHTRGVWCVSFSKNDQL 519 (775)
T ss_pred ------hhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee--------CCccceEEEEeccccce
Confidence 0000112466889999999999999999999999999999888888885 99999999999999999
Q ss_pred EEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECC
Q 002564 489 MISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE 567 (907)
Q Consensus 489 l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp 567 (907)
++|++.|++|+||.+.+..++.++.++ +.|..+.|-.++..|++++.||.+++|++.++.|+.++.+|.++|.+++-+|
T Consensus 520 laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~ 599 (775)
T KOG0319|consen 520 LATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSP 599 (775)
T ss_pred eEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecC
Confidence 999999999999999999999999955 8999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEE
Q 002564 568 DGKWLLSSGMDGSLRIWD 585 (907)
Q Consensus 568 dg~~l~s~s~Dg~I~vwd 585 (907)
.+.+++||+.||.|.+|.
T Consensus 600 ~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 600 LLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ccceeEecCCCeEEEEee
Confidence 999999999999999996
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-50 Score=387.90 Aligned_cols=365 Identities=19% Similarity=0.329 Sum_probs=311.5
Q ss_pred eeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564 130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209 (907)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd 209 (907)
...+.+|.+.+.++.|+|++ ..|++|+.|.++++||+.+..+.++.++|...|.|++|+|||+.||+|+.||+|++||
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g--~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTG--SRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred ccccCCCCCcEEEEEecCCC--ceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 45677899999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceEEEEeecCCCCEEEEEEec-----CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEE
Q 002564 210 VRYDEELVTFTHSMRGAVTALAFSS-----DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM 284 (907)
Q Consensus 210 ~~~~~~~~~~~~~~~~~v~~l~fs~-----dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~ 284 (907)
.++|+++..-..+|...|++++|.| ..+ +||+++.||.++|||+..++++..+. +|+.+|+|+.|--+| +++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~~~ls-gHT~~VTCvrwGG~g-liy 262 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCVRTLS-GHTASVTCVRWGGEG-LIY 262 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEEEEec-cCccceEEEEEcCCc-eEE
Confidence 9999988777767799999999976 455 89999999999999999999999998 999999999997555 999
Q ss_pred EEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhc
Q 002564 285 SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKL 364 (907)
Q Consensus 285 s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 364 (907)
+++.|++|++|+...+ .+.+.+.||...|+.++.+.+- .|=+|..|.+=+- ....+ ...+++..
T Consensus 263 SgS~DrtIkvw~a~dG----~~~r~lkGHahwvN~lalsTdy-~LRtgaf~~t~~~--------~~~~s--e~~~~Al~- 326 (480)
T KOG0271|consen 263 SGSQDRTIKVWRALDG----KLCRELKGHAHWVNHLALSTDY-VLRTGAFDHTGRK--------PKSFS--EEQKKALE- 326 (480)
T ss_pred ecCCCceEEEEEccch----hHHHhhcccchheeeeeccchh-hhhcccccccccc--------CCChH--HHHHHHHH-
Confidence 9999999999976543 6788899999999999988652 2334444422111 11110 00111100
Q ss_pred cchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeC
Q 002564 365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA 444 (907)
Q Consensus 365 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 444 (907)
+ ...+.-..|..+++|+.
T Consensus 327 r--------------------------------------------------------------Y~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 327 R--------------------------------------------------------------YEAVLKDSGERLVSGSD 344 (480)
T ss_pred H--------------------------------------------------------------HHHhhccCcceeEEecC
Confidence 0 00011123578999999
Q ss_pred CCcEEEEeCCCCc-cceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEE
Q 002564 445 GGWIERFNLQSGI-SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIV 522 (907)
Q Consensus 445 dg~i~i~d~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~ 522 (907)
|+++.+|+....+ ++... .+|..-|+.+.|+||++++++++-|..|++||..+|+.+.++..+ .+|..++
T Consensus 345 d~tlflW~p~~~kkpi~rm--------tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva 416 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKKPITRM--------TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA 416 (480)
T ss_pred CceEEEecccccccchhhh--------hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence 9999999976544 44444 499999999999999999999999999999999999999999966 9999999
Q ss_pred EeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEE
Q 002564 523 YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (907)
Q Consensus 523 ~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd 585 (907)
|+.|.++|++|+.|.++++||+.+.++...+.||.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 417 wsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 417 WSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999999999999999999999999999995
No 12
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-45 Score=383.21 Aligned_cols=482 Identities=15% Similarity=0.244 Sum_probs=395.1
Q ss_pred cCCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEEcCe---EEEEeCCe--eEEEEcccccceEE
Q 002564 24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAH--QVATWSRHSAKVNL 98 (907)
Q Consensus 24 ~~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~---I~vw~~~~--~~~~~~~h~~~V~~ 98 (907)
++.-.+|++-.||.|+||+..+......+.+|...|+++.|+..|..+|+|+. |.+||.-. .+.++.||...|+.
T Consensus 75 ~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~ 154 (888)
T KOG0306|consen 75 DDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQ 154 (888)
T ss_pred CCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhH
Confidence 44556788889999999999999999999999999999999999999999876 99999633 36669999999999
Q ss_pred EEee--CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCC------
Q 002564 99 LLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST------ 170 (907)
Q Consensus 99 l~~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~------ 170 (907)
..|. .++++|++.|+.|++||+++..+ ..+.-.+.+.++..++++ +.+++++.|+.+.+|++..
T Consensus 155 ~~F~~~~~~lvS~sKDs~iK~WdL~tqhC----f~Thvd~r~Eiw~l~~~~----~~lvt~~~dse~~v~~L~~~~D~~~ 226 (888)
T KOG0306|consen 155 ALFLNGDSFLVSVSKDSMIKFWDLETQHC----FETHVDHRGEIWALVLDE----KLLVTAGTDSELKVWELAFEDDEKE 226 (888)
T ss_pred HhccCCCeEEEEeccCceEEEEeccccee----eeEEecccceEEEEEEec----ceEEEEecCCceEEEEeeccccccc
Confidence 9873 68999999999999999999988 777777888888999888 4688999999999999811
Q ss_pred ------------------CeEEEE----------EcCC------------------------------------------
Q 002564 171 ------------------KKKLYE----------FKGW------------------------------------------ 180 (907)
Q Consensus 171 ------------------~~~~~~----------~~~h------------------------------------------ 180 (907)
++.+.. +.++
T Consensus 227 ~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~s 306 (888)
T KOG0306|consen 227 TNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKS 306 (888)
T ss_pred ccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhh
Confidence 001100 0000
Q ss_pred -------------CCCEEEEEEcCCCC---EEEEEecCCeEEEEEccC-Cce------E--EEEeecCCCCEEEEEEecC
Q 002564 181 -------------GSSISSCVSSPALD---VVAVGCSDGKIHVHNVRY-DEE------L--VTFTHSMRGAVTALAFSSD 235 (907)
Q Consensus 181 -------------~~~I~~l~~sp~~~---~la~g~~dg~I~iwd~~~-~~~------~--~~~~~~~~~~v~~l~fs~d 235 (907)
...|.++.+.|.++ .|+. ..+..+..|.+.. ++. + ..+ .+|...|.+++|+.|
T Consensus 307 l~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~-~GHR~dVRsl~vS~d 384 (888)
T KOG0306|consen 307 LSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEI-GGHRSDVRSLCVSSD 384 (888)
T ss_pred HHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeee-ccchhheeEEEeecC
Confidence 23456666666543 2333 6677888888765 211 1 222 345889999999998
Q ss_pred CCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCC
Q 002564 236 GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA 315 (907)
Q Consensus 236 g~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~ 315 (907)
.. ++++|+ .+.|++|+..+.+++.++. .+.+.+..|.|.++++++|...|.+.++|+... .++.....|.+
T Consensus 385 ~~-~~~Sga-~~SikiWn~~t~kciRTi~---~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~----~l~Eti~AHdg 455 (888)
T KOG0306|consen 385 SI-LLASGA-GESIKIWNRDTLKCIRTIT---CGYILASKFVPGDRYIVLGTKNGELQVFDLASA----SLVETIRAHDG 455 (888)
T ss_pred ce-eeeecC-CCcEEEEEccCcceeEEec---cccEEEEEecCCCceEEEeccCCceEEEEeehh----hhhhhhhcccc
Confidence 86 666654 6799999999999999997 338899999999999999999999999998765 45666679999
Q ss_pred CCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEE
Q 002564 316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC 395 (907)
Q Consensus 316 ~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 395 (907)
.+++++..||++.+++||.|.+|++||..-....
T Consensus 456 aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~---------------------------------------------- 489 (888)
T KOG0306|consen 456 AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV---------------------------------------------- 489 (888)
T ss_pred ceeeeeecCCCCceEEecCCcEEEEEeEEEEecc----------------------------------------------
Confidence 9999999999999999999999999997532110
Q ss_pred eeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCC
Q 002564 396 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG 475 (907)
Q Consensus 396 ~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 475 (907)
...+-++..+.. ...+ .-+..+.|+.+||||++++++--|.++++|-+.+-+..-.+ ++|.-
T Consensus 490 --~gt~~k~lsl~~----~rtL----el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL--------YGHkL 551 (888)
T KOG0306|consen 490 --PGTQKKVLSLKH----TRTL----ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL--------YGHKL 551 (888)
T ss_pred --Ccccceeeeecc----ceEE----eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee--------ccccc
Confidence 000000001100 0111 12378999999999999999999999999999998877776 49999
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeee-cCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee
Q 002564 476 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE 554 (907)
Q Consensus 476 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~ 554 (907)
+|.|+.++||+++++||+.|..|++|-++-|.+.+.+- |...|.++.|.|+..++.+++.|+.|+-||-...+.++.+.
T Consensus 552 PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~ 631 (888)
T KOG0306|consen 552 PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD 631 (888)
T ss_pred ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec
Confidence 99999999999999999999999999999999888764 55899999999999999999999999999999999999999
Q ss_pred cCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCC
Q 002564 555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (907)
Q Consensus 555 ~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~ 588 (907)
+|...|.+++.+|+|.+++++|.|.+||+|....
T Consensus 632 ~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 632 GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9999999999999999999999999999999654
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.5e-42 Score=358.23 Aligned_cols=547 Identities=17% Similarity=0.230 Sum_probs=393.0
Q ss_pred CCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEEcCe-----EEEEeCC--eeEEEEcccccceE
Q 002564 25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH-----IAVVKRA--HQVATWSRHSAKVN 97 (907)
Q Consensus 25 ~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~-----I~vw~~~--~~~~~~~~h~~~V~ 97 (907)
.-.-++++..|..|.+||.+..++-+....+..+++|+||+++|+|+|+|.. ++||+.. ..++++..|.-.|+
T Consensus 47 p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vt 126 (1080)
T KOG1408|consen 47 PCSGLCAYPAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVT 126 (1080)
T ss_pred ccccceeeccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccce
Confidence 4566889999999999999998888888888999999999999999999873 9999964 45778999999999
Q ss_pred EEEe--eCCEEEEEec--CCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeE
Q 002564 98 LLLL--FGEHILSIDI--DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK 173 (907)
Q Consensus 98 ~l~~--~g~~l~s~~~--dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~ 173 (907)
+++| .++|+++.+. |-.|.+||+.-+.. ...-+ -...+...+|+.++ .++++.+. ..|++|.+..++.
T Consensus 127 cvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~----~asnk-iss~Vsav~fsEdg--SYfvT~gn-rHvk~wyl~~~~K 198 (1080)
T KOG1408|consen 127 CVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSS----GASNK-ISSVVSAVAFSEDG--SYFVTSGN-RHVKLWYLQIQSK 198 (1080)
T ss_pred eeeecCCCcEEEeeccccceEEEhhhhhhccc----ccccc-cceeEEEEEEccCC--ceeeeeee-eeEEEEEeecccc
Confidence 9997 5899999887 45578898765433 11111 12345677899999 78888854 5699999987763
Q ss_pred EEE---EcCCCCCEEEEEEcCCCCEEEEEec-------------CCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCC
Q 002564 174 LYE---FKGWGSSISSCVSSPALDVVAVGCS-------------DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237 (907)
Q Consensus 174 ~~~---~~~h~~~I~~l~~sp~~~~la~g~~-------------dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~ 237 (907)
... |.+...-...+. +..++++++. .|.+.-+. +.+.+-++..-......|++.+.+
T Consensus 199 ykdpiPl~gRs~~lg~lr---~n~f~avaCg~gicAestfait~qGhLvEFS--sRRLLDKWVqcRTTnAnCIcVs~r-- 271 (1080)
T KOG1408|consen 199 YKDPIPLPGRSYFLGNLR---FNEFLAVACGVGICAESTFAITAQGHLVEFS--SRRLLDKWVQCRTTNANCICVSSR-- 271 (1080)
T ss_pred ccCCccccchhhhccccc---cchhhhhhhcCcccccceEEEecccceeeec--hhhhhhhhhhhhccccceeeeecc--
Confidence 321 111111111111 1122222222 23222221 222222222221334567777654
Q ss_pred CEEEEEeCCCcEEEEECCCceeeeeeecccc-----------------------cCeEEEEEecCCCEEEEEcCCCcEEE
Q 002564 238 PLLASGASSGVISIWNLEKRRLQSVIREAHD-----------------------NAIISLHFFANEPVLMSASADNSIKM 294 (907)
Q Consensus 238 ~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~-----------------------~~V~~l~~~~~~~~l~s~~~d~~i~v 294 (907)
++++|+.+|.|++|+.++-....++...|. ....++.|.+....|.+...|.++++
T Consensus 272 -~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYv 350 (1080)
T KOG1408|consen 272 -LIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYV 350 (1080)
T ss_pred -eEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEE
Confidence 899999999999999887766665553221 12356788888889999999999999
Q ss_pred EEccCCCCCcceeEeccCCCCCCeEEEEec-C----------CCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhh
Q 002564 295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-N----------GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 363 (907)
Q Consensus 295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~----------g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 363 (907)
||++..+...+... .--|+.-|+.+.-.| + ...+++|+.|++||+|++........+....+.....+
T Consensus 351 WDvrD~~kvgk~~s-~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~k 429 (1080)
T KOG1408|consen 351 WDVRDVNKVGKCSS-MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSK 429 (1080)
T ss_pred Eeccccccccceee-eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhc
Confidence 99987765544433 336888888777665 1 23689999999999999987555444433332222221
Q ss_pred ccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe
Q 002564 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (907)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 443 (907)
+........+ +-|. ............-+....++++++||+|++|+.|.
T Consensus 430 i~y~d~~~q~------------------------------~~d~-~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGD 478 (1080)
T KOG1408|consen 430 IPYEDSTQQI------------------------------MHDA-SAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGD 478 (1080)
T ss_pred CccccCchhh------------------------------hhhc-cCCcccccchhhcCcccceEEEEECCCcceecccC
Confidence 1111110000 0000 00000111111112346799999999999999999
Q ss_pred CCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcC---CCCEEEEEecCCeEEEEECCCCc-eeeeeec-----
Q 002564 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS---TNTLMISAGYHGDIKVWDFKGRD-LKSRWEV----- 514 (907)
Q Consensus 444 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~---~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~----- 514 (907)
..|++++|+++.-....... +|...|.|+.++. ..++|++++.|..|.++|....- ++.++..
T Consensus 479 r~GnlrVy~Lq~l~~~~~~e--------AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI 550 (1080)
T KOG1408|consen 479 RGGNLRVYDLQELEYTCFME--------AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI 550 (1080)
T ss_pred ccCceEEEEehhhhhhhhee--------cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence 99999999999988777665 9999999999986 35899999999999999976431 1111111
Q ss_pred ---------------------------------------------CcceeEEEEeeCCCEEEEEeCCCeEEEEEccccee
Q 002564 515 ---------------------------------------------GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM 549 (907)
Q Consensus 515 ---------------------------------------------~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~ 549 (907)
+..+..++..|..+++++++.|..|+|||+++++.
T Consensus 551 TsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 551 TSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ 630 (1080)
T ss_pred eEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence 14566777888889999999999999999999999
Q ss_pred EEEeec---CCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCc-eEEEEECCCCceEEEEEecCCeEEE
Q 002564 550 VRKFEG---HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYL 625 (907)
Q Consensus 550 ~~~~~~---h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~l 625 (907)
++.|+| |.+....+...|.|-||++...|.++.++|..+|+++..+.+|+. |+.+.|++|.+.|++++.|++ |++
T Consensus 631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC-IFv 709 (1080)
T KOG1408|consen 631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC-IFV 709 (1080)
T ss_pred eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCce-EEE
Confidence 999986 667788899999999999999999999999999999999998887 999999999999999999995 999
Q ss_pred eec
Q 002564 626 WVN 628 (907)
Q Consensus 626 W~~ 628 (907)
|.+
T Consensus 710 W~l 712 (1080)
T KOG1408|consen 710 WKL 712 (1080)
T ss_pred EEC
Confidence 987
No 14
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.1e-42 Score=338.07 Aligned_cols=279 Identities=21% Similarity=0.383 Sum_probs=260.9
Q ss_pred CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecC--CCEEEEEcCCCcEEEEEccCCC
Q 002564 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTTD 301 (907)
Q Consensus 224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~d~~i~vw~~~~~~ 301 (907)
..+|..+.|+.|+. +++||+.+|.+++|+..+...+.++. +|...|.++.|+|. +..++||+.||++++|+++..
T Consensus 175 ~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~l~-gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e- 251 (459)
T KOG0272|consen 175 TRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQTLR-GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE- 251 (459)
T ss_pred CCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEEEe-ccccceeeEEEccCCCccceeeeccCCceeeeccCCC-
Confidence 67999999999999 99999999999999999999999999 99999999999997 568999999999999998875
Q ss_pred CCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeee
Q 002564 302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 381 (907)
Q Consensus 302 ~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 381 (907)
..+..+.+|...|..++|+|+|++|+|++.|.+-++||+.+......
T Consensus 252 ---~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~------------------------------ 298 (459)
T KOG0272|consen 252 ---TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL------------------------------ 298 (459)
T ss_pred ---cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh------------------------------
Confidence 56777889999999999999999999999999999999876432211
Q ss_pred cccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccee
Q 002564 382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS 461 (907)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~ 461 (907)
T Consensus 299 -------------------------------------------------------------------------------- 298 (459)
T KOG0272|consen 299 -------------------------------------------------------------------------------- 298 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEE
Q 002564 462 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIR 540 (907)
Q Consensus 462 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~ 540 (907)
. .+|...|.+++|.+||.+++|||.|..-+|||+.+++++..+..+ .+|..+.|+|+|..||+|+.|++++
T Consensus 299 Q--------EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~k 370 (459)
T KOG0272|consen 299 Q--------EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCK 370 (459)
T ss_pred h--------cccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEE
Confidence 0 389999999999999999999999999999999999999999877 8999999999999999999999999
Q ss_pred EEEcccceeEEEeecCCCCeeeEEECC-CCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCc-eEEEEECCCCceEEEEEe
Q 002564 541 LFDVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHV 618 (907)
Q Consensus 541 v~d~~~~~~~~~~~~h~~~I~~l~fsp-dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~-v~~l~~spdg~~lat~~~ 618 (907)
|||++..+.+.++.+|.+-|+.+.|+| .|.+|+|++.|++++||.-.++.+++.+.+|.. |.++.++||+.+++|++.
T Consensus 371 VWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~ 450 (459)
T KOG0272|consen 371 VWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSF 450 (459)
T ss_pred EeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEecc
Confidence 999999999999999999999999999 789999999999999999999999999999876 999999999999999999
Q ss_pred cCCeEEEee
Q 002564 619 DQNGVYLWV 627 (907)
Q Consensus 619 d~~~i~lW~ 627 (907)
|. ++++|.
T Consensus 451 DR-T~KLW~ 458 (459)
T KOG0272|consen 451 DR-TIKLWR 458 (459)
T ss_pred Cc-eeeecc
Confidence 98 899996
No 15
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.2e-42 Score=335.94 Aligned_cols=283 Identities=20% Similarity=0.326 Sum_probs=260.5
Q ss_pred CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecC-CCCEEEEEeCCCcEEEEECCCc
Q 002564 179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-GQPLLASGASSGVISIWNLEKR 257 (907)
Q Consensus 179 ~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d-g~~~l~sg~~dg~I~iwd~~~~ 257 (907)
+-..+|..+.||++++.||+|+.+|.+++|+..+...+.+|.+| .+.|.++.|+|. ...-||+|+.||++++|++.+.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH-~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGH-TSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecc-ccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 45789999999999999999999999999999999999999887 899999999998 3447999999999999999999
Q ss_pred eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCC
Q 002564 258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337 (907)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~ 337 (907)
.++..+. +|...|..++|+|+|++|+|++.|.+-++||+.+.. .+....||+..|.+++|.+||..+++||.|..
T Consensus 252 ~~l~~l~-gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~----ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~ 326 (459)
T KOG0272|consen 252 TPLQDLE-GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS----ELLLQEGHSKGVFSIAFQPDGSLAATGGLDSL 326 (459)
T ss_pred cchhhhh-cchhhheeeeecCCCceeeecccccchhhcccccch----hhHhhcccccccceeEecCCCceeeccCccch
Confidence 9999998 999999999999999999999999999999998774 44556799999999999999999999999998
Q ss_pred EEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceee
Q 002564 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 417 (907)
Q Consensus 338 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~ 417 (907)
-++||++++.++..
T Consensus 327 ~RvWDlRtgr~im~------------------------------------------------------------------ 340 (459)
T KOG0272|consen 327 GRVWDLRTGRCIMF------------------------------------------------------------------ 340 (459)
T ss_pred hheeecccCcEEEE------------------------------------------------------------------
Confidence 89998876543221
Q ss_pred ecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCe
Q 002564 418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD 497 (907)
Q Consensus 418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 497 (907)
+ .+|..+|.+++|+|+|..|+||+.|++
T Consensus 341 --------------------------------------------L--------~gH~k~I~~V~fsPNGy~lATgs~Dnt 368 (459)
T KOG0272|consen 341 --------------------------------------------L--------AGHIKEILSVAFSPNGYHLATGSSDNT 368 (459)
T ss_pred --------------------------------------------e--------cccccceeeEeECCCceEEeecCCCCc
Confidence 1 389999999999999999999999999
Q ss_pred EEEEECCCCceeeeeecC-cceeEEEEee-CCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEE
Q 002564 498 IKVWDFKGRDLKSRWEVG-CSLVKIVYHR-VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 575 (907)
Q Consensus 498 i~iwd~~~~~~~~~~~~~-~~i~~~~~s~-~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~ 575 (907)
++|||+...+.+.++..+ .-|+.++|+| .|.+|++++.|++++||...++.+++.+.||.+.|.++..+||+.+++|+
T Consensus 369 ~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 369 CKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATS 448 (459)
T ss_pred EEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEe
Confidence 999999998888888766 7889999998 78899999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEE
Q 002564 576 GMDGSLRIWD 585 (907)
Q Consensus 576 s~Dg~I~vwd 585 (907)
+.|.++++|.
T Consensus 449 s~DRT~KLW~ 458 (459)
T KOG0272|consen 449 SFDRTIKLWR 458 (459)
T ss_pred ccCceeeecc
Confidence 9999999995
No 16
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=7.2e-38 Score=324.32 Aligned_cols=545 Identities=17% Similarity=0.208 Sum_probs=390.7
Q ss_pred CCcceeEEEcCCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeE---EEEEcC---eEEEEeCC----e
Q 002564 15 SSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYT---FAAYGN---HIAVVKRA----H 84 (907)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~---~~a~g~---~I~vw~~~----~ 84 (907)
+.+|-.... +...+++++.+.+|.+||..+-..+...++|.++|+|+.+-|... ++.+|+ +|.+|... .
T Consensus 14 ~R~~~v~sw-~~~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~ 92 (764)
T KOG1063|consen 14 NRVPKVSSW-GPGGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLI 92 (764)
T ss_pred ccccccccc-cccceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheE
Confidence 445544333 667788888999999999999877778899999999999998876 555554 39999854 3
Q ss_pred eEEEEcccccceEEEEeeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcc--cEEEEcCCCCCCEEEEEecCCc
Q 002564 85 QVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFT--PTCIMHPDTYLNKVIVGSQEGS 162 (907)
Q Consensus 85 ~~~~~~~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~l~~~s~dg~ 162 (907)
.+.++.+|...+.++.-..........|+++.+||.+..+... ...+.+..+.. .+.++.|+...-.+++|+.+..
T Consensus 93 ~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~--~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~ 170 (764)
T KOG1063|consen 93 KIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFL--LAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFV 170 (764)
T ss_pred EEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceee--ehheehhhhhHhhHHHhhhccCCcEEEEecCcceE
Confidence 3556888888887776433333333679999999996555211 23333333222 2223445332135667777778
Q ss_pred EEEEecCC--CeEEEEEcCCCCCEEEEEEcCCCC---EEEEEecCCeEEEEEccCCc-----------------------
Q 002564 163 LQLWNIST--KKKLYEFKGWGSSISSCVSSPALD---VVAVGCSDGKIHVHNVRYDE----------------------- 214 (907)
Q Consensus 163 i~iwd~~~--~~~~~~~~~h~~~I~~l~~sp~~~---~la~g~~dg~I~iwd~~~~~----------------------- 214 (907)
|.++.-.+ .+.+..+.||...|.+++|...+. +||+++.|..|+||.+.-+.
T Consensus 171 v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l 250 (764)
T KOG1063|consen 171 VDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMIL 250 (764)
T ss_pred EEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeee
Confidence 88886543 367788999999999999987654 89999999999999875322
Q ss_pred -eEE------EEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc--eeeeeee----cccccCeEEEEEecCCC
Q 002564 215 -ELV------TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIR----EAHDNAIISLHFFANEP 281 (907)
Q Consensus 215 -~~~------~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~--~~~~~~~----~~h~~~V~~l~~~~~~~ 281 (907)
.+. .+..+|...|+++.|+|.+. .|.+++.|.++.+|...+. --+...+ .+......+..|+|+++
T Consensus 251 ~~i~~~is~eall~GHeDWV~sv~W~p~~~-~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~ 329 (764)
T KOG1063|consen 251 EEIQYRISFEALLMGHEDWVYSVWWHPEGL-DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN 329 (764)
T ss_pred eeEEEEEehhhhhcCcccceEEEEEccchh-hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC
Confidence 111 12246789999999999997 6888999999999987654 2222222 13455688999999999
Q ss_pred EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHH
Q 002564 282 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA 361 (907)
Q Consensus 282 ~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 361 (907)
.+++-+..|..++|. ......+.......||.+.|..+.|+|.|.+|++.|.|.+-|+|..-..+..
T Consensus 330 ~ii~~g~~Gg~hlWk-t~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~------------ 396 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWK-TKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE------------ 396 (764)
T ss_pred EEEEecccCcEEEEe-ccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccc------------
Confidence 999999999999997 3333445566677899999999999999999999999999999864311110
Q ss_pred hhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEE
Q 002564 362 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL 441 (907)
Q Consensus 362 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 441 (907)
-+.+..+.-|...++|+++-+....++.
T Consensus 397 ----------------------------------------------------wHEiaRPQiHGyDl~c~~~vn~~~~FVS 424 (764)
T KOG1063|consen 397 ----------------------------------------------------WHEIARPQIHGYDLTCLSFVNEDLQFVS 424 (764)
T ss_pred ----------------------------------------------------eeeecccccccccceeeehccCCceeee
Confidence 1112222233444555555554344444
Q ss_pred EeCCCcEEEEeCC-------------------------------------------CCcc------------ceeeeccc
Q 002564 442 GTAGGWIERFNLQ-------------------------------------------SGIS------------RGSYLDMS 466 (907)
Q Consensus 442 g~~dg~i~i~d~~-------------------------------------------~~~~------------~~~~~~~~ 466 (907)
|.....+++|+.. +|.. ...+..++
T Consensus 425 gAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP 504 (764)
T KOG1063|consen 425 GADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPP 504 (764)
T ss_pred cccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCC
Confidence 4444555555432 1111 00000000
Q ss_pred -------------cccccCcCCcEEEEEEcCCCCEEEEEecC-----CeEEEEECCCCceeeeeecC-cceeEEEEeeCC
Q 002564 467 -------------ERSNYAHNGEVVGVACDSTNTLMISAGYH-----GDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN 527 (907)
Q Consensus 467 -------------~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~ 527 (907)
...+++|...|.+++.+|++++++|++.. ..|++|+..+-.....+..+ -.|+.++||||+
T Consensus 505 ~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg 584 (764)
T KOG1063|consen 505 TEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDG 584 (764)
T ss_pred hHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCC
Confidence 00568999999999999999999999854 35999999988877766655 789999999999
Q ss_pred CEEEEEeCCCeEEEEEccccee----EEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCC--cee---eEeeeC
Q 002564 528 GLLATVADDLVIRLFDVVALRM----VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA--RQI---DAIHVD 598 (907)
Q Consensus 528 ~~la~~~~dg~I~v~d~~~~~~----~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~--~~~---~~~~~~ 598 (907)
++|++.+.|.++.+|....... ....+.|+.-|.+..|+|++.+++|+|.|.+|+||..+.+ +.+ ..+.+.
T Consensus 585 ~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~ 664 (764)
T KOG1063|consen 585 RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFS 664 (764)
T ss_pred cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccC
Confidence 9999999999999998754321 3346789999999999999999999999999999999887 443 345667
Q ss_pred CceEEEEECCC-----CceEEEEEecCCeEEEeecc
Q 002564 599 VSITALSLSPN-----MDVLATAHVDQNGVYLWVNR 629 (907)
Q Consensus 599 ~~v~~l~~spd-----g~~lat~~~d~~~i~lW~~~ 629 (907)
.+|+.++|.|- +..++.|-..| -|++|..+
T Consensus 665 ~aVTAv~~~~~~~~e~~~~vavGle~G-eI~l~~~~ 699 (764)
T KOG1063|consen 665 LAVTAVAYLPVDHNEKGDVVAVGLEKG-EIVLWRRK 699 (764)
T ss_pred CceeeEEeeccccccccceEEEEeccc-EEEEEecc
Confidence 78999999872 23566666666 59999854
No 17
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.1e-39 Score=299.63 Aligned_cols=289 Identities=19% Similarity=0.352 Sum_probs=267.8
Q ss_pred EEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEE
Q 002564 217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 296 (907)
Q Consensus 217 ~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~ 296 (907)
+.+++ |.+.|.++.|++|++ .+++++.||.+.|||.-+....+.++ -....|..++|+|.|+++++|+-|+...||+
T Consensus 49 r~LkG-H~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~haip-l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 49 RTLKG-HLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHAIP-LPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred EEecc-cccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeEEe-cCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 44555 489999999999999 89999999999999999988888887 6788999999999999999999999999999
Q ss_pred ccCC--CCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccC
Q 002564 297 FDTT--DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 374 (907)
Q Consensus 297 ~~~~--~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (907)
+... ++..+..+.+.+|.+.+.++.|.+| .+|++++.|.+..+||+++++....+.
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~--------------------- 183 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFH--------------------- 183 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEec---------------------
Confidence 9876 5556677889999999999999985 589999999999999999887766543
Q ss_pred ceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 002564 375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNL 453 (907)
Q Consensus 375 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~i~d~ 453 (907)
+|.+.|.+++++| +++.+++|+.|+..++||+
T Consensus 184 -----------------------------------------------GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~ 216 (343)
T KOG0286|consen 184 -----------------------------------------------GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDV 216 (343)
T ss_pred -----------------------------------------------CCcccEEEEecCCCCCCeEEecccccceeeeec
Confidence 5779999999999 9999999999999999999
Q ss_pred CCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC---cceeEEEEeeCCCEE
Q 002564 454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLL 530 (907)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~l 530 (907)
+.+...+.|. +|...|+++.|.|+|.-+++|+.|++.++||++..+.+..+.+. .+|++++||..|++|
T Consensus 217 R~~~c~qtF~--------ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlL 288 (343)
T KOG0286|consen 217 RSGQCVQTFE--------GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLL 288 (343)
T ss_pred cCcceeEeec--------ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEE
Confidence 9999999996 99999999999999999999999999999999999999888765 799999999999999
Q ss_pred EEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEE
Q 002564 531 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (907)
Q Consensus 531 a~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd 585 (907)
.+|..|.++.+||.-.++.+..+.||.++|+++..+|||.-++|||.|.++|||.
T Consensus 289 fagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 289 FAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999999999999999999999999999999999994
No 18
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-38 Score=319.80 Aligned_cols=470 Identities=17% Similarity=0.219 Sum_probs=339.1
Q ss_pred EcccccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEE
Q 002564 89 WSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW 166 (907)
Q Consensus 89 ~~~h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iw 166 (907)
+..|+.+|.++.+ -..+++++-.+|.|.|||.++... ++.+......+.++.|-+.. +.+++|+.|..|++|
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm----VksfeV~~~PvRa~kfiaRk--nWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM----VKSFEVSEVPVRAAKFIARK--NWIVTGSDDMQIRVF 82 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEeccccee----eeeeeecccchhhheeeecc--ceEEEecCCceEEEE
Confidence 5668899999885 678999999999999999999988 89999999999999999888 899999999999999
Q ss_pred ecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCc-eEEEEeecCCCCEEEEEEecCCCCEEEEEeC
Q 002564 167 NISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGAS 245 (907)
Q Consensus 167 d~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~ 245 (907)
|..+++.++.|..|..-|+|++.+|...++++++.|-.|++||.+.+- +.++|.+| ...|.+++|.|.....+|+++-
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH-~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH-EHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc-ceEEEEEEecCCCccceeeeec
Confidence 999999999999999999999999999999999999999999998664 55666655 8899999999988879999999
Q ss_pred CCcEEEEECCCceeeeeeecccccCeEEEEEecCC--CEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEe
Q 002564 246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE--PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323 (907)
Q Consensus 246 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 323 (907)
|++|+||.+.+..+..++. +|...|+++.|.+.| ++|++|+.|.++++||+.+. .+++++.||...|..+.|+
T Consensus 162 DrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk----~CV~TLeGHt~Nvs~v~fh 236 (794)
T KOG0276|consen 162 DRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK----SCVQTLEGHTNNVSFVFFH 236 (794)
T ss_pred cccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecchH----HHHHHhhcccccceEEEec
Confidence 9999999999999999999 999999999999855 79999999999999999876 6889999999999999999
Q ss_pred cCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEE
Q 002564 324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (907)
Q Consensus 324 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (907)
|.-..+++|+.||++|+|+..+-+....+..+ +..+-++... .....++.+.+.+.+.
T Consensus 237 p~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g-----------------leRvW~I~~~-----k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 237 PELPIIISGSEDGTVRIWNSKTYKLEKTLNYG-----------------LERVWCIAAH-----KGDGKIAVGFDEGSVT 294 (794)
T ss_pred CCCcEEEEecCCccEEEecCcceehhhhhhcC-----------------CceEEEEeec-----CCCCeEEEeccCCcEE
Confidence 99999999999999999998766554443221 0001000000 0001112222211111
Q ss_pred EEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeecccc-----ccccCcCCcEE
Q 002564 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE-----RSNYAHNGEVV 478 (907)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~-----~~~~~h~~~v~ 478 (907)
+ .. ......+.+++.|+.+-+.... |.--++.+-........... ..+-...-...
T Consensus 295 v-------------~l----greeP~vsMd~~gKIiwa~~~e--i~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq 355 (794)
T KOG0276|consen 295 V-------------KL----GREEPAVSMDSNGKIIWAVHSE--IQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQ 355 (794)
T ss_pred E-------------Ec----cCCCCceeecCCccEEEEcCce--eeeeeceeccCcccccCCccccchhhhccccccchH
Confidence 1 00 0112233444445444332221 11111111100000000000 00001111233
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCC
Q 002564 479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTD 558 (907)
Q Consensus 479 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~ 558 (907)
.++.+|+|+++++|+ ||.-.||..-. .+-+.-+.-....|++|.+..|+-..++.|+++ ++.+..+.+.....
T Consensus 356 ~L~hsPNGrfV~Vcg-dGEyiIyTala----~RnK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~~ 428 (794)
T KOG0276|consen 356 TLAHSPNGRFVVVCG-DGEYIIYTALA----LRNKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS 428 (794)
T ss_pred HhccCCCCcEEEEec-CccEEEEEeee----hhhcccccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccccccc
Confidence 567789998777666 68888876221 111222566778999998989998889999998 56666655542221
Q ss_pred CeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEee
Q 002564 559 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV 627 (907)
Q Consensus 559 ~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~ 627 (907)
..+--.|.+|... .++.+++||..++++++.+... ...+.|+.+|.+++.++.+. .++..
T Consensus 429 ----~e~i~gg~Llg~~-ss~~~~fydW~~~~lVrrI~v~--~k~v~w~d~g~lVai~~d~S--fyil~ 488 (794)
T KOG0276|consen 429 ----AEGIFGGPLLGVR-SSDFLCFYDWESGELVRRIEVT--SKHVYWSDNGELVAIAGDDS--FYILK 488 (794)
T ss_pred ----eeeecCCceEEEE-eCCeEEEEEcccceEEEEEeec--cceeEEecCCCEEEEEecCc--eeEEE
Confidence 1111234445544 5567999999999999988653 45799999999999999886 44443
No 19
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=8e-39 Score=307.50 Aligned_cols=341 Identities=21% Similarity=0.294 Sum_probs=300.6
Q ss_pred eEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEE
Q 002564 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251 (907)
Q Consensus 172 ~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~i 251 (907)
.-+.+|..|...|.+++.+|+.+++++|+.|..-.+|++.+++....+..| +..|+++.|+.||. +||+|+.+|.|+|
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgH-KDSVt~~~Fshdgt-lLATGdmsG~v~v 132 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGH-KDSVTCCSFSHDGT-LLATGDMSGKVLV 132 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCC-CCceEEEEEccCce-EEEecCCCccEEE
Confidence 456788999999999999999999999999999999999999988888776 89999999999999 9999999999999
Q ss_pred EECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEE
Q 002564 252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331 (907)
Q Consensus 252 wd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s 331 (907)
|...++.....+. ..-..+.-+.|+|.+..|+.|+.||.+.+|.+... ...+.+.||..++++-.|.|+|+.+++
T Consensus 133 ~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~----~~~kv~~Gh~~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 133 FKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ----ALCKVMSGHNSPCTCGEFIPDGKRILT 207 (399)
T ss_pred EEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCc----ceeeEecCCCCCcccccccCCCceEEE
Confidence 9999999888886 56778999999999999999999999999988765 456778899999999999999999999
Q ss_pred EeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeece
Q 002564 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411 (907)
Q Consensus 332 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~ 411 (907)
+..||+|++|+..++++...+.+.
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~-------------------------------------------------------- 231 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQA-------------------------------------------------------- 231 (399)
T ss_pred EecCceEEEEecCCCceeEEeccc--------------------------------------------------------
Confidence 999999999999988766655431
Q ss_pred ecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcC---CCCE
Q 002564 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS---TNTL 488 (907)
Q Consensus 412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~---~~~~ 488 (907)
.....+++.++..+..++.|..++.+++.+..+|+.+.......+.....+...+.++.+.| .-.+
T Consensus 232 -----------e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL 300 (399)
T KOG0296|consen 232 -----------EGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPL 300 (399)
T ss_pred -----------ccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccch
Confidence 12456777888888889999999999988888888877765322223335555555555544 5578
Q ss_pred EEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCC
Q 002564 489 MISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED 568 (907)
Q Consensus 489 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspd 568 (907)
.++|+.||+|.|||+...+++....+..+|+.+.|-+ ..+|++++.+|.|+.||.++|+++..+.||...|.+++.+|+
T Consensus 301 ~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~ 379 (399)
T KOG0296|consen 301 AACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQ 379 (399)
T ss_pred hhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCC
Confidence 8999999999999999999999999999999999998 889999999999999999999999999999999999999999
Q ss_pred CcEEEEEeCCCcEEEEEcC
Q 002564 569 GKWLLSSGMDGSLRIWDVI 587 (907)
Q Consensus 569 g~~l~s~s~Dg~I~vwd~~ 587 (907)
+++++|+|.|++.+||+++
T Consensus 380 ~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 380 KRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CcEEEEecCCCeEEEEecC
Confidence 9999999999999999875
No 20
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5.3e-38 Score=324.73 Aligned_cols=486 Identities=16% Similarity=0.235 Sum_probs=365.0
Q ss_pred cCCeEEEEEEeCC--eEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEE-cCe----EEEEeCCeeEEE-Ecccccc
Q 002564 24 LGTENFVTVSVGK--AFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY-GNH----IAVVKRAHQVAT-WSRHSAK 95 (907)
Q Consensus 24 ~~~~~~~~~~~~~--~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~-g~~----I~vw~~~~~~~~-~~~h~~~ 95 (907)
+.++|++++-.|+ +++||++..-.++..+..|.-.++|+||+|.+.|+.+ |.+ |-+|+....+.. -..-...
T Consensus 88 ~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~ 167 (1080)
T KOG1408|consen 88 QNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSV 167 (1080)
T ss_pred CCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccccccccee
Confidence 7899999988654 5999999998888888899999999999999999987 444 778875443332 3344567
Q ss_pred eEEEEe--eCCEEEEEecCCcEEEEecCCCCccccce---------eeEec--------CCC--cccEEEEc--------
Q 002564 96 VNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPV---------GHVKL--------DDK--FTPTCIMH-------- 146 (907)
Q Consensus 96 V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~---------~~~~~--------~~~--~~~~~~~~-------- 146 (907)
|.+++| +|.|+++.+ ...|++|.++.+.....++ ..+.. ..+ ...+.++.
T Consensus 168 Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEF 246 (1080)
T KOG1408|consen 168 VSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEF 246 (1080)
T ss_pred EEEEEEccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeee
Confidence 788887 799999998 7899999998776322111 00000 000 00111111
Q ss_pred ---------------------CCCCCCEEEEEecCCcEEEEecCCCeEEEEEcC-C-----------------------C
Q 002564 147 ---------------------PDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG-W-----------------------G 181 (907)
Q Consensus 147 ---------------------p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-h-----------------------~ 181 (907)
-+. ++|++|+.+|.|+++|..+..-+.++.. | -
T Consensus 247 SsRRLLDKWVqcRTTnAnCIcVs~--r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~f 324 (1080)
T KOG1408|consen 247 SSRRLLDKWVQCRTTNANCICVSS--RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIF 324 (1080)
T ss_pred chhhhhhhhhhhhccccceeeeec--ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccC
Confidence 123 6799999999999999877554433321 1 0
Q ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEE---EEeecCCCCEEEEEEec------------CCCCEEEEEeCC
Q 002564 182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV---TFTHSMRGAVTALAFSS------------DGQPLLASGASS 246 (907)
Q Consensus 182 ~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~---~~~~~~~~~v~~l~fs~------------dg~~~l~sg~~d 246 (907)
....++.|+|..+.|.+...|..+.|||++.-+.+. .+.. |...|+.+.--| .+ .+++++.|
T Consensus 325 PD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~ly-HS~ciW~Ve~~p~nv~~~~~aclp~~--cF~TCSsD 401 (1080)
T KOG1408|consen 325 PDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLY-HSACIWDVENLPCNVHSPTAACLPRG--CFTTCSSD 401 (1080)
T ss_pred CceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeee-ccceeeeeccccccccCcccccCCcc--ceeEecCC
Confidence 123568899999999999999999999998654332 2222 245666665444 23 48899999
Q ss_pred CcEEEEECCCceeeeeee------------------------------------cccccCeEEEEEecCCCEEEEEcCCC
Q 002564 247 GVISIWNLEKRRLQSVIR------------------------------------EAHDNAIISLHFFANEPVLMSASADN 290 (907)
Q Consensus 247 g~I~iwd~~~~~~~~~~~------------------------------------~~h~~~V~~l~~~~~~~~l~s~~~d~ 290 (907)
++|++||++.+..-..+. ......+.+++.+|+|++|++|..-|
T Consensus 402 ~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~G 481 (1080)
T KOG1408|consen 402 GTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGG 481 (1080)
T ss_pred CcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccC
Confidence 999999997631111100 01235789999999999999999999
Q ss_pred cEEEEEccCCCCCcceeEeccCCCCCCeEEEEec---CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccch
Q 002564 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA---NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 367 (907)
Q Consensus 291 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~---~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (907)
.+++|++... +.......|...|.|+.|+. ..++|++++.|+.|.++|+...-.
T Consensus 482 nlrVy~Lq~l----~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~------------------- 538 (1080)
T KOG1408|consen 482 NLRVYDLQEL----EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD------------------- 538 (1080)
T ss_pred ceEEEEehhh----hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc-------------------
Confidence 9999988755 45566779999999999986 457899999999999999854321
Q ss_pred hhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCC--CEEEEEeCC
Q 002564 368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG--NFAVLGTAG 445 (907)
Q Consensus 368 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~d 445 (907)
......+|...|+++.|...| ..+++++.|
T Consensus 539 ------------------------------------------------l~qtld~HSssITsvKFa~~gln~~MiscGAD 570 (1080)
T KOG1408|consen 539 ------------------------------------------------LVQTLDGHSSSITSVKFACNGLNRKMISCGAD 570 (1080)
T ss_pred ------------------------------------------------hhhhhcccccceeEEEEeecCCceEEEeccCc
Confidence 122334677899999998888 678888888
Q ss_pred CcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC----cceeEE
Q 002564 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG----CSLVKI 521 (907)
Q Consensus 446 g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~i~~~ 521 (907)
..|.+-..+.......+... ........+..++++|..+++++++.|..|+|||+.+++..+.++.. +....+
T Consensus 571 ksimFr~~qk~~~g~~f~r~---t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv 647 (1080)
T KOG1408|consen 571 KSIMFRVNQKASSGRLFPRH---TQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKV 647 (1080)
T ss_pred hhhheehhccccCceecccc---ccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEE
Confidence 87755443322222222200 00122457899999999999999999999999999999999999754 678889
Q ss_pred EEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCC
Q 002564 522 VYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 589 (907)
Q Consensus 522 ~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~ 589 (907)
...|.|.|+|+.+.|.++.++|..+++++.+..||...|+.+.|++|-+.|++++.||.|.||.++..
T Consensus 648 ~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 648 ILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred EECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999753
No 21
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.8e-38 Score=293.80 Aligned_cols=290 Identities=18% Similarity=0.318 Sum_probs=262.9
Q ss_pred eeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564 130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209 (907)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd 209 (907)
-+.++.|..-+..+-|+++. ++|++++.||.+.|||.-+...++.++-....|..++|+|.|+++|.|+-|+...||+
T Consensus 48 rr~LkGH~~Ki~~~~ws~Ds--r~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDS--RRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred EEEecccccceeeeEecCCc--CeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 36677888888888899999 8999999999999999999999999998899999999999999999999999999999
Q ss_pred ccCC--c---eEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEec-CCCEE
Q 002564 210 VRYD--E---ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVL 283 (907)
Q Consensus 210 ~~~~--~---~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l 283 (907)
+.+. + .+......|.+.+.|+.|.+|+. |++++.|.+..+||+++++.+..+. +|.+.|.++.++| +++.+
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccceEEEEec-CCcccEEEEecCCCCCCeE
Confidence 9865 2 23333344589999999999875 8899999999999999999999999 9999999999999 99999
Q ss_pred EEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhh
Q 002564 284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 363 (907)
Q Consensus 284 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 363 (907)
++|+-|+..++||++.+ ...+.+.+|...|++++|.|+|.-+++|+.|++.|+||++.+++...++..
T Consensus 203 vSg~cD~~aklWD~R~~----~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~-------- 270 (343)
T KOG0286|consen 203 VSGGCDKSAKLWDVRSG----QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD-------- 270 (343)
T ss_pred EecccccceeeeeccCc----ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC--------
Confidence 99999999999998866 678899999999999999999999999999999999999988776654321
Q ss_pred ccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe
Q 002564 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (907)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 443 (907)
....+|++++||..|++|++|+
T Consensus 271 ----------------------------------------------------------~~~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 271 ----------------------------------------------------------SIICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred ----------------------------------------------------------cccCCceeEEEcccccEEEeee
Confidence 1237899999999999999999
Q ss_pred CCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (907)
Q Consensus 444 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 502 (907)
.|.++.+||.-.++....+. +|...|+++..+|||..+++|+.|.+++||.
T Consensus 293 ~d~~c~vWDtlk~e~vg~L~--------GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 293 DDFTCNVWDTLKGERVGVLA--------GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cCCceeEeeccccceEEEee--------ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999998885 9999999999999999999999999999994
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.7e-37 Score=282.62 Aligned_cols=291 Identities=14% Similarity=0.319 Sum_probs=255.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCC
Q 002564 236 GQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA 315 (907)
Q Consensus 236 g~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~ 315 (907)
..-+|++++.|.+|++|...+|.+..+++ ..++.|+.+...|+++.|++++. ..||+||+++.+. ..+.++.+|..
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np--~Pv~t~e~h~k 84 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP--NPVATFEGHTK 84 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC--CceeEEeccCC
Confidence 33489999999999999999999999998 56789999999999999999884 6799999987654 46788899999
Q ss_pred CCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEE
Q 002564 316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC 395 (907)
Q Consensus 316 ~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 395 (907)
.|+++.|..+|+.+++|+.||+++|||++.....+.+
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~------------------------------------------- 121 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY------------------------------------------- 121 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc-------------------------------------------
Confidence 9999999999999999999999999999875544433
Q ss_pred eeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCC
Q 002564 396 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG 475 (907)
Q Consensus 396 ~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 475 (907)
.+..+|+++.+.|+...|++|..+|.|++||+........+. +....
T Consensus 122 --------------------------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li-------Pe~~~ 168 (311)
T KOG0315|consen 122 --------------------------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI-------PEDDT 168 (311)
T ss_pred --------------------------cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC-------CCCCc
Confidence 234889999999999999999999999999999887766664 35567
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCCCce------eeeeec-CcceeEEEEeeCCCEEEEEeCCCeEEEEEcccc-
Q 002564 476 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL------KSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL- 547 (907)
Q Consensus 476 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~-~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~- 547 (907)
.|.++.+.|+|.+++.+...|...+|++-+... +..++. ...+..+.+|||+++||+++.|.+++||+.++.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 899999999999999999999999999877543 333333 378999999999999999999999999999988
Q ss_pred eeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCC-ceEEEEE
Q 002564 548 RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSL 606 (907)
Q Consensus 548 ~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~-~v~~l~~ 606 (907)
+....+.+|...+.+.+||.||+||+||+.|+++++||+..++.++.+.+|. +..+++.
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 7778899999999999999999999999999999999999999999988765 4566654
No 23
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-37 Score=285.76 Aligned_cols=299 Identities=18% Similarity=0.272 Sum_probs=254.6
Q ss_pred EEEcccccceEEEEe---eCCEEEEEecCCcEEEEecCCCCc-cccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCc
Q 002564 87 ATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEE-NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGS 162 (907)
Q Consensus 87 ~~~~~h~~~V~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~ 162 (907)
.++++|.+.|+.++. +.+.+++++.|.++.+|++..... ...+++.+.+|..++..+++++++ ++.++++.|++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg--~~alS~swD~~ 86 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG--NFALSASWDGT 86 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC--ceEEeccccce
Confidence 349999999999995 478999999999999999977643 234578899999999999999999 99999999999
Q ss_pred EEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecC-CCCEEEEEEecCC-CCEE
Q 002564 163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM-RGAVTALAFSSDG-QPLL 240 (907)
Q Consensus 163 i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~dg-~~~l 240 (907)
+++||+.+|+..+.|.+|...|.+++|+||.+.+++|+.|.+|++||.. +.+..++..+. .+.|+|+.|+|+. .+++
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~I 165 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPII 165 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEE
Confidence 9999999999999999999999999999999999999999999999987 55555555443 7899999999984 5599
Q ss_pred EEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEE
Q 002564 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320 (907)
Q Consensus 241 ~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i 320 (907)
++++.|++|++||+++.+....+. +|.+.++.++++|||.++++|+.||.+.+||++... .+..+ +|...|.++
T Consensus 166 vs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k----~lysl-~a~~~v~sl 239 (315)
T KOG0279|consen 166 VSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK----NLYSL-EAFDIVNSL 239 (315)
T ss_pred EEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCCEEecCCCCceEEEEEccCCc----eeEec-cCCCeEeeE
Confidence 999999999999999999999998 999999999999999999999999999999998764 34443 788999999
Q ss_pred EEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCc
Q 002564 321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA 400 (907)
Q Consensus 321 ~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 400 (907)
+|+|+.- .+.+..+..|+|||+.+...+.++.......
T Consensus 240 ~fspnry-wL~~at~~sIkIwdl~~~~~v~~l~~d~~g~----------------------------------------- 277 (315)
T KOG0279|consen 240 CFSPNRY-WLCAATATSIKIWDLESKAVVEELKLDGIGP----------------------------------------- 277 (315)
T ss_pred EecCCce-eEeeccCCceEEEeccchhhhhhcccccccc-----------------------------------------
Confidence 9999864 4455556669999999888777654311000
Q ss_pred eEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 002564 401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ 454 (907)
Q Consensus 401 ~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~ 454 (907)
..........+++|+++|..|+.|+.|+.|++|.+.
T Consensus 278 ------------------s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 278 ------------------SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ------------------ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 000112456788999999999999999999999864
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.5e-37 Score=306.42 Aligned_cols=325 Identities=22% Similarity=0.367 Sum_probs=275.3
Q ss_pred cCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEEccCC--c--eEEEEe---------ecCCCCEEEEEEecCCCCEEEEE
Q 002564 178 KGWGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYD--E--ELVTFT---------HSMRGAVTALAFSSDGQPLLASG 243 (907)
Q Consensus 178 ~~h~~~I~~l~~sp~~~-~la~g~~dg~I~iwd~~~~--~--~~~~~~---------~~~~~~v~~l~fs~dg~~~l~sg 243 (907)
..|..+|.+++|+|-.. .+++|+.|...++|++... . ....++ ......|++++|+.+|. +||+|
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~-~LatG 253 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT-LLATG 253 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC-eEEEe
Confidence 34999999999999877 9999999999999999741 1 111111 11235799999999999 99999
Q ss_pred eCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEe
Q 002564 244 ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323 (907)
Q Consensus 244 ~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 323 (907)
+.||.+++|+. .|.++.++. .|.++|.++.|+..|.+|++++.|+++.+||..++ .....+.-|..+-..+.|-
T Consensus 254 ~~~G~~riw~~-~G~l~~tl~-~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g----~~~q~f~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 254 SEDGEARIWNK-DGNLISTLG-QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG----TVKQQFEFHSAPALDVDWQ 327 (524)
T ss_pred ecCcEEEEEec-Cchhhhhhh-ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc----eEEEeeeeccCCccceEEe
Confidence 99999999995 677777777 89999999999999999999999999999987655 3455556677776777776
Q ss_pred cCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEE
Q 002564 324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (907)
Q Consensus 324 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (907)
.+ ..+++++.|+.|+++.+.
T Consensus 328 ~~-~~F~ts~td~~i~V~kv~----------------------------------------------------------- 347 (524)
T KOG0273|consen 328 SN-DEFATSSTDGCIHVCKVG----------------------------------------------------------- 347 (524)
T ss_pred cC-ceEeecCCCceEEEEEec-----------------------------------------------------------
Confidence 44 356777777776666543
Q ss_pred EEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEc
Q 002564 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD 483 (907)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 483 (907)
...+..++ .+|.+.|.++.|+
T Consensus 348 ---------------------------------------------------~~~P~~t~--------~GH~g~V~alk~n 368 (524)
T KOG0273|consen 348 ---------------------------------------------------EDRPVKTF--------IGHHGEVNALKWN 368 (524)
T ss_pred ---------------------------------------------------CCCcceee--------ecccCceEEEEEC
Confidence 22333334 3899999999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCC---------CEEEEEeCCCeEEEEEcccceeEEEe
Q 002564 484 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN---------GLLATVADDLVIRLFDVVALRMVRKF 553 (907)
Q Consensus 484 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~---------~~la~~~~dg~I~v~d~~~~~~~~~~ 553 (907)
|.|.+|++++.|+++++|+.........+..+ ..|..+.|+|.| ..+++++.|++|++||+..+.++.+|
T Consensus 369 ~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f 448 (524)
T KOG0273|consen 369 PTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL 448 (524)
T ss_pred CCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee
Confidence 99999999999999999998888777777655 689999999865 48999999999999999999999999
Q ss_pred ecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564 554 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (907)
Q Consensus 554 ~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (907)
..|..+|.+++|||+|+|+|+|+.||.|.+|+++++++++.+.....|..++|+.+|++|..+-.|+ .+++-|++
T Consensus 449 ~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~-~vcvldlr 523 (524)
T KOG0273|consen 449 MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDG-SVCVLDLR 523 (524)
T ss_pred ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCC-CceEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 58887764
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.6e-37 Score=278.41 Aligned_cols=295 Identities=17% Similarity=0.255 Sum_probs=254.0
Q ss_pred CEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCce--eeeeeecccccCe
Q 002564 194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAI 271 (907)
Q Consensus 194 ~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~h~~~V 271 (907)
-+|++++.|.+|++|...+|.+..++.+. .+.|..+...||++ .||+++ ...|++||++++. ++.++. +|...|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~-dsqVNrLeiTpdk~-~LAaa~-~qhvRlyD~~S~np~Pv~t~e-~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHP-DSQVNRLEITPDKK-DLAAAG-NQHVRLYDLNSNNPNPVATFE-GHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecC-ccceeeEEEcCCcc-hhhhcc-CCeeEEEEccCCCCCceeEEe-ccCCce
Confidence 37899999999999999999999999876 88999999999999 777776 4689999999885 577777 999999
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceeccccee
Q 002564 272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE 351 (907)
Q Consensus 272 ~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~ 351 (907)
+++.|..+|+.+++||+||+++|||++... +.+. ..|..+|+++..+|+...|++|.++|.|++||+.......+
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~----~qR~-~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLS----CQRN-YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcc----cchh-ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 999999999999999999999999998742 2232 36779999999999999999999999999999987765554
Q ss_pred echhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEE
Q 002564 352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT 431 (907)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~ 431 (907)
+.. .....+.+++
T Consensus 162 liP-------------------------------------------------------------------e~~~~i~sl~ 174 (311)
T KOG0315|consen 162 LIP-------------------------------------------------------------------EDDTSIQSLT 174 (311)
T ss_pred cCC-------------------------------------------------------------------CCCcceeeEE
Confidence 321 2237899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC-ceee
Q 002564 432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKS 510 (907)
Q Consensus 432 ~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~ 510 (907)
+.|||.+++.+...|+.++|++-.......+.. ....++|.+.+....+||++++|++++.|.+++||+.++. +...
T Consensus 175 v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P--~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~ 252 (311)
T KOG0315|consen 175 VMPDGSMLAAANNKGNCYVWRLLNHQTASELEP--VHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLEL 252 (311)
T ss_pred EcCCCcEEEEecCCccEEEEEccCCCccccceE--hhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEE
Confidence 999999999999999999999987654443321 1224689999999999999999999999999999999987 4444
Q ss_pred eeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEEC
Q 002564 511 RWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS 566 (907)
Q Consensus 511 ~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fs 566 (907)
.++.+ ..+..++||.||.+|++|+.|+.+++||+..++.++.+.||.....+++..
T Consensus 253 ~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 253 VLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 44444 689999999999999999999999999999999999999999888777753
No 26
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.1e-34 Score=289.57 Aligned_cols=517 Identities=16% Similarity=0.194 Sum_probs=386.2
Q ss_pred eEeecCCcceeEEEcCCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEEcCe-----------EE
Q 002564 10 IGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH-----------IA 78 (907)
Q Consensus 10 ~g~v~~~~~~~~~~~~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~-----------I~ 78 (907)
.||-.-.+..+++......++.. ......+||.+...+.... +|...|.||+++||...+|+|.. ++
T Consensus 60 ygYRG~dcR~Nly~lptgE~vyf-vA~V~Vl~n~ee~~Qr~y~-GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvr 137 (626)
T KOG2106|consen 60 YGYRGVDCRNNLYLLPTGELVYF-VAAVGVLYNWEERSQRHYL-GHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVR 137 (626)
T ss_pred EeecceeeeceeEEccCccEEEE-eccEEEEEeehhhhccccc-CCCCceEEEeecCCceeeccCcccccCCCcCCCeee
Confidence 34433334445555444444333 3466778888775544443 78999999999999999997532 99
Q ss_pred EEeCCee--EEEEcccccceEEEEee----CCEEEEEec--CCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCC
Q 002564 79 VVKRAHQ--VATWSRHSAKVNLLLLF----GEHILSIDI--DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTY 150 (907)
Q Consensus 79 vw~~~~~--~~~~~~h~~~V~~l~~~----g~~l~s~~~--dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 150 (907)
+||.-+. +..+..-...|++++|. |..|+..+. +..+.|||...+.. ...++.....+..+.|||...
T Consensus 138 iWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~----~~~vk~sne~v~~a~FHPtd~ 213 (626)
T KOG2106|consen 138 IWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAK----LGPVKTSNEVVFLATFHPTDP 213 (626)
T ss_pred ecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhc----cCcceeccceEEEEEeccCCC
Confidence 9996543 55566777889999983 777777764 33489999998877 566666677788899999985
Q ss_pred CCEEEEEecCCcEEEEecCCCeEEEE---EcCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCC
Q 002564 151 LNKVIVGSQEGSLQLWNISTKKKLYE---FKGW-GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGA 226 (907)
Q Consensus 151 ~~~l~~~s~dg~i~iwd~~~~~~~~~---~~~h-~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~ 226 (907)
+.++++ ..|.+..|+.+.+....+ |+.+ ..-|.|++|.++|+ +++|..+|.|.||+..+.+..+... .|.+.
T Consensus 214 -nliit~-Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~gg 289 (626)
T KOG2106|consen 214 -NLIITC-GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGG 289 (626)
T ss_pred -cEEEEe-CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCc
Confidence 555555 557899999988866544 4433 46799999999997 6789999999999998887777777 56899
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee-cccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcc
Q 002564 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR 305 (907)
Q Consensus 227 v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~ 305 (907)
|.+++...+|. |++|+.|..|..||- .-+.+.... ....++|..++-... -|+.|...+.|-.=.++..
T Consensus 290 v~~L~~lr~Gt--llSGgKDRki~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~--di~vGTtrN~iL~Gt~~~~----- 359 (626)
T KOG2106|consen 290 VFSLCMLRDGT--LLSGGKDRKIILWDD-NYRKLRETELPEQFGPIRTVAEGKG--DILVGTTRNFILQGTLENG----- 359 (626)
T ss_pred eEEEEEecCcc--EeecCccceEEeccc-cccccccccCchhcCCeeEEecCCC--cEEEeeccceEEEeeecCC-----
Confidence 99999999997 566999999999993 332222222 245567777764333 3777776666655444332
Q ss_pred eeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccc
Q 002564 306 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR 385 (907)
Q Consensus 306 ~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 385 (907)
......+|......++.+|+...+++++.|+.+++|+ ..+..
T Consensus 360 f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~------------------------------------ 401 (626)
T KOG2106|consen 360 FTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE------------------------------------ 401 (626)
T ss_pred ceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCcee------------------------------------
Confidence 2333458999999999999999999999999999998 11111
Q ss_pred cccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeecc
Q 002564 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM 465 (907)
Q Consensus 386 ~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~ 465 (907)
|+.. -..++.|+.|+|.| .+++|+..|...+.|..+...+..-.
T Consensus 402 -------------------wt~~--------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-- 445 (626)
T KOG2106|consen 402 -------------------WTKI--------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-- 445 (626)
T ss_pred -------------------EEEE--------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe--
Confidence 1111 12778999999999 99999999999999999866655442
Q ss_pred ccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCcee-eee-e-cCcceeEEEEeeCCCEEEEEeCCCeEEEE
Q 002564 466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK-SRW-E-VGCSLVKIVYHRVNGLLATVADDLVIRLF 542 (907)
Q Consensus 466 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~-~-~~~~i~~~~~s~~~~~la~~~~dg~I~v~ 542 (907)
. ..+++++.++|+|.+|+.|+.|+.|++|.++..... ... . ...+|+.+.||+|++++.+-+.|-.|..|
T Consensus 446 ------d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 446 ------D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred ------c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 3 789999999999999999999999999998754332 222 1 22899999999999999999999999999
Q ss_pred EcccceeEE--------------Ee----ecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceee---EeeeCCc-
Q 002564 543 DVVALRMVR--------------KF----EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID---AIHVDVS- 600 (907)
Q Consensus 543 d~~~~~~~~--------------~~----~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~---~~~~~~~- 600 (907)
....-+.+. -| ..|...|..++-+.+.+.+++|...|.|++|..+--+... .+.+|+.
T Consensus 519 ~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~ 598 (626)
T KOG2106|consen 519 KPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSH 598 (626)
T ss_pred ccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccce
Confidence 443221111 11 1355668888889999999999999999999987555443 3444555
Q ss_pred eEEEEECCCCceEEEEEecCCeEEEeec
Q 002564 601 ITALSLSPNMDVLATAHVDQNGVYLWVN 628 (907)
Q Consensus 601 v~~l~~spdg~~lat~~~d~~~i~lW~~ 628 (907)
|++++|.-+...|.+.+.|. +|..|++
T Consensus 599 vt~V~Fl~~d~~li~tg~D~-Si~qW~l 625 (626)
T KOG2106|consen 599 VTNVAFLCKDSHLISTGKDT-SIMQWRL 625 (626)
T ss_pred eEEEEEeeCCceEEecCCCc-eEEEEEe
Confidence 99999999888888888887 7999985
No 27
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.3e-35 Score=305.81 Aligned_cols=485 Identities=19% Similarity=0.264 Sum_probs=355.2
Q ss_pred eEEEEEc--CeEEEEeCCee-E-EEEcccccceEEEEe--eCC---EEEEEecCCcEEEEecCCCCccccceeeEecCCC
Q 002564 68 YTFAAYG--NHIAVVKRAHQ-V-ATWSRHSAKVNLLLL--FGE---HILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDK 138 (907)
Q Consensus 68 ~~~~a~g--~~I~vw~~~~~-~-~~~~~h~~~V~~l~~--~g~---~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~ 138 (907)
+..+|+| ..|.+||..+. + ..+.||.++|+|+.+ ..+ +++||+.||.|++|.+..... ..+.+++++..
T Consensus 25 ~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~--~~i~~~~g~~~ 102 (764)
T KOG1063|consen 25 GGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYL--IKIYTIQGHCK 102 (764)
T ss_pred cceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehhe--EEEEeecCcce
Confidence 4444554 44999998776 3 339999999999996 333 899999999999999984333 22455555322
Q ss_pred cccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe--EEEEEcCCC--CCEEEEEEcCCCC--EEEEEecCCeEEEEEccC
Q 002564 139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK--KLYEFKGWG--SSISSCVSSPALD--VVAVGCSDGKIHVHNVRY 212 (907)
Q Consensus 139 ~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~h~--~~I~~l~~sp~~~--~la~g~~dg~I~iwd~~~ 212 (907)
...+++... ..+.+.+.++.+.+||.+..+ +...+.--. .--.|+++.|+.+ ++|.|+.+..|.++.-.+
T Consensus 103 --~~~cv~a~~--~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~ 178 (764)
T KOG1063|consen 103 --ECVCVVARS--SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSA 178 (764)
T ss_pred --eEEEEEeee--eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCC
Confidence 233343322 233334689999999985555 333332222 2234566666333 566777888888887665
Q ss_pred Cc--eEEEEeecCCCCEEEEEEecCC--CCEEEEEeCCCcEEEEECCCce---------------------ee---e---
Q 002564 213 DE--ELVTFTHSMRGAVTALAFSSDG--QPLLASGASSGVISIWNLEKRR---------------------LQ---S--- 261 (907)
Q Consensus 213 ~~--~~~~~~~~~~~~v~~l~fs~dg--~~~l~sg~~dg~I~iwd~~~~~---------------------~~---~--- 261 (907)
++ .+..+.+| .+.|.+++|...+ ..+||+++.|..|+||.+.-+. .. .
T Consensus 179 d~f~~v~el~GH-~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~i 257 (764)
T KOG1063|consen 179 DSFARVAELEGH-TDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRI 257 (764)
T ss_pred cceeEEEEeecc-chhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEE
Confidence 53 44555554 8999999998654 4688999999999999864322 01 0
Q ss_pred ---eeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEe---ccCCCCCCeEEEEecCCCEEEEEeCC
Q 002564 262 ---VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF---RSGHSAPPLCIRFYANGRHILSAGQD 335 (907)
Q Consensus 262 ---~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~---~~~h~~~v~~i~~~~~g~~l~s~~~d 335 (907)
.+..+|...|.++.|+|.+..|++++.|.++.+|.-+..++.+..... ..|.........|+|++..+++-+.-
T Consensus 258 s~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~ 337 (764)
T KOG1063|consen 258 SFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT 337 (764)
T ss_pred ehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc
Confidence 111489999999999999999999999999999988777665544332 23445678899999999999999999
Q ss_pred CCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecce
Q 002564 336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415 (907)
Q Consensus 336 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~ 415 (907)
|..++|...... .|..
T Consensus 338 Gg~hlWkt~d~~--------------------------------------------------------~w~~-------- 353 (764)
T KOG1063|consen 338 GGFHLWKTKDKT--------------------------------------------------------FWTQ-------- 353 (764)
T ss_pred CcEEEEeccCcc--------------------------------------------------------ceee--------
Confidence 999999822111 1111
Q ss_pred eeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc-ceeeeccccccccCcCCcEEEEEEcCCCCEEEEEec
Q 002564 416 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS-RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY 494 (907)
Q Consensus 416 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 494 (907)
.....+|...|+.++|+|.|.|+++.+.|-+-++|-.-..+. -..+ ...+-|...++|+++-+....+++|..
T Consensus 354 -~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEi-----aRPQiHGyDl~c~~~vn~~~~FVSgAd 427 (764)
T KOG1063|consen 354 -EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEI-----ARPQIHGYDLTCLSFVNEDLQFVSGAD 427 (764)
T ss_pred -ccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeee-----cccccccccceeeehccCCceeeeccc
Confidence 122346779999999999999999999999999987652111 1111 123478889999999987778889999
Q ss_pred CCeEEEEECCCC--------------------------------ce----------------------------------
Q 002564 495 HGDIKVWDFKGR--------------------------------DL---------------------------------- 508 (907)
Q Consensus 495 dg~i~iwd~~~~--------------------------------~~---------------------------------- 508 (907)
+..+|+|+.... +.
T Consensus 428 EKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Ed 507 (764)
T KOG1063|consen 428 EKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTED 507 (764)
T ss_pred ceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHH
Confidence 999999975321 00
Q ss_pred -----------eeeeecCcceeEEEEeeCCCEEEEEeCCC-----eEEEEEcccceeEEEeecCCCCeeeEEECCCCcEE
Q 002564 509 -----------KSRWEVGCSLVKIVYHRVNGLLATVADDL-----VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWL 572 (907)
Q Consensus 509 -----------~~~~~~~~~i~~~~~s~~~~~la~~~~dg-----~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l 572 (907)
.+.+.|...|.+++.+|+++++|+++... .|++|+..++..+..+.+|.-.|+.++|||||++|
T Consensus 508 qLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~L 587 (764)
T KOG1063|consen 508 QLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYL 587 (764)
T ss_pred HHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEE
Confidence 00111236799999999999999998653 79999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEEcCCCce----eeEeeeCCc-eEEEEECCCCceEEEEEecCCeEEEeeccc
Q 002564 573 LSSGMDGSLRIWDVILARQ----IDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (907)
Q Consensus 573 ~s~s~Dg~I~vwd~~~~~~----~~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~~~~ 630 (907)
+++|.|+++.+|....+.. .+..+.|.. |.+..|+|++.++||++.|+ .|.+|....
T Consensus 588 LsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK-~VkVW~~~~ 649 (764)
T KOG1063|consen 588 LSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK-KVKVWEEPD 649 (764)
T ss_pred EEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCc-eEEEEeccC
Confidence 9999999999998854321 223445665 99999999999999999999 699998643
No 28
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=9.9e-36 Score=276.18 Aligned_cols=298 Identities=18% Similarity=0.272 Sum_probs=256.4
Q ss_pred eeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecC-----CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCe
Q 002564 130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS-----TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGK 204 (907)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~-----~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~ 204 (907)
..+++.|.+.+...+..+.+. +.+++++.|.++.+|++. .|.+++.++||...|..++.+++|++.++++.|+.
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~-~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNS-DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeecCCCceEEEEEeecCCC-ceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 467788899988888888854 889999999999999764 57889999999999999999999999999999999
Q ss_pred EEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecC--CCE
Q 002564 205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN--EPV 282 (907)
Q Consensus 205 I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~ 282 (907)
+++||+.+++..+.|.+| ...|.+++|++|.+ .+++|+.|.+|.+||.............|.+.|.++.|+|+ .++
T Consensus 87 lrlWDl~~g~~t~~f~GH-~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGH-TKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred EEEEEecCCcEEEEEEec-CCceEEEEecCCCc-eeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 999999999999999887 77899999999998 89999999999999987666555555445889999999998 789
Q ss_pred EEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHh
Q 002564 283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR 362 (907)
Q Consensus 283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 362 (907)
+++++.|++|++||++.. ++...+.||++.++.++++|||..+++|+.||.+.+||+..++....+
T Consensus 165 Ivs~s~DktvKvWnl~~~----~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl---------- 230 (315)
T KOG0279|consen 165 IVSASWDKTVKVWNLRNC----QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL---------- 230 (315)
T ss_pred EEEccCCceEEEEccCCc----chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec----------
Confidence 999999999999998765 566777899999999999999999999999999999999887665443
Q ss_pred hccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEE
Q 002564 363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG 442 (907)
Q Consensus 363 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 442 (907)
++...|.+++|+|+.-+|+.+
T Consensus 231 -----------------------------------------------------------~a~~~v~sl~fspnrywL~~a 251 (315)
T KOG0279|consen 231 -----------------------------------------------------------EAFDIVNSLCFSPNRYWLCAA 251 (315)
T ss_pred -----------------------------------------------------------cCCCeEeeEEecCCceeEeec
Confidence 234789999999998888887
Q ss_pred eCCCcEEEEeCCCCccceeeecccccc-ccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564 443 TAGGWIERFNLQSGISRGSYLDMSERS-NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (907)
Q Consensus 443 ~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 504 (907)
+..+ |+|||+.++..+..+....... .........+++|+++|..|+++..|+.|++|.+.
T Consensus 252 t~~s-IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 252 TATS-IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cCCc-eEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 7665 9999999998887775332211 12223456788999999999999999999999864
No 29
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=7e-34 Score=300.83 Aligned_cols=542 Identities=16% Similarity=0.211 Sum_probs=402.3
Q ss_pred eeeEeecCCcceeEEE-cCCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEE-cCeEEEEeCCee
Q 002564 8 KAIGYITSSVPFSVQR-LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY-GNHIAVVKRAHQ 85 (907)
Q Consensus 8 r~~g~v~~~~~~~~~~-~~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~-g~~I~vw~~~~~ 85 (907)
+.++. +...|-.+.. .....++.+..++.|.+|--.+ ....+...|...|.-+...++...... .+.+.||+....
T Consensus 67 ~ll~v-s~~lp~~I~alas~~~~vy~A~g~~i~~~~rgk-~i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~ 144 (910)
T KOG1539|consen 67 NLLFV-SKPLPDKITALASDKDYVYVASGNKIYAYARGK-HIRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSI 144 (910)
T ss_pred EEEEe-cCCCCCceEEEEecCceEEEecCcEEEEEEccc-eEEEEeccccceEEEEeeecceEEEEEccCcEEEEEeccc
Confidence 44443 4445543332 2344555556678888885332 344455567789999888777666555 455999985441
Q ss_pred -E--E---E-EcccccceEEEE-ee--CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEE
Q 002564 86 -V--A---T-WSRHSAKVNLLL-LF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVI 155 (907)
Q Consensus 86 -~--~---~-~~~h~~~V~~l~-~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~ 155 (907)
. . + ++.....|+++. |. =+.++.|+.+|.+++|++.+++. +.+++.....+.++.-+|. +..++
T Consensus 145 ~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~----v~~f~~~~s~IT~ieqsPa--LDVVa 218 (910)
T KOG1539|consen 145 QEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKV----VYTFQEFFSRITAIEQSPA--LDVVA 218 (910)
T ss_pred cccccccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcE----EEEecccccceeEeccCCc--ceEEE
Confidence 1 1 1 222223388876 43 46788889999999999999999 7887776655544444444 48999
Q ss_pred EEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEec
Q 002564 156 VGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSS 234 (907)
Q Consensus 156 ~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~-~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~ 234 (907)
+|..+|+|.++|++.++.+.+|+.-.++|++++|..||+ .+|+|+..|.+.+||++..+.+......|.+.|..+.|.|
T Consensus 219 iG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~ 298 (910)
T KOG1539|consen 219 IGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP 298 (910)
T ss_pred EeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC
Confidence 999999999999999999999997679999999999997 6778888899999999988888888877789999999998
Q ss_pred CCCCEEEEEeCCCcEEEEECCCc----eeeeeeecccccCeEEEEEe-cCCCEEEEEcCCCcEEEEEccCCCCCcceeE-
Q 002564 235 DGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFF-ANEPVLMSASADNSIKMWIFDTTDGDPRLLR- 308 (907)
Q Consensus 235 dg~~~l~sg~~dg~I~iwd~~~~----~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~- 308 (907)
... ++++++.|+.+++|=.+++ +.+. .+.||..+..++.|. .++..+.+++.|++.+.+++........+.+
T Consensus 299 ~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR-~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~ 376 (910)
T KOG1539|consen 299 GEP-VLVTAGADNSLKVWVFDSGDGVPRLLR-SRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQL 376 (910)
T ss_pred CCc-eEeeccCCCceeEEEeeCCCCcchhee-eccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccc
Confidence 776 9999999999998865544 3333 345999999999998 6888999999999998887643211111110
Q ss_pred -------------eccCCCCCCeEEEEec-----CCCEEEEEeCCCCEEEEEceecccce-eechhhhhHHHhhccchhh
Q 002564 309 -------------FRSGHSAPPLCIRFYA-----NGRHILSAGQDRAFRLFSVIQDQQSR-ELSQRHVAKRARKLKMKEE 369 (907)
Q Consensus 309 -------------~~~~h~~~v~~i~~~~-----~g~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 369 (907)
...-.-.+|..+++.. ..+.+...-.+...+.|+......-. .+......+
T Consensus 377 ~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~---------- 446 (910)
T KOG1539|consen 377 HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKK---------- 446 (910)
T ss_pred ccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccc----------
Confidence 0011123566666654 13455556677889999987655422 221110000
Q ss_pred hcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 002564 370 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE 449 (907)
Q Consensus 370 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~ 449 (907)
-...+.+...+ .-.+.+..+...+.|.+|+++.+... ..+...+.|..+|+.++...-++.+++++.+|.+.
T Consensus 447 --~~~~~~av~vs-----~CGNF~~IG~S~G~Id~fNmQSGi~r-~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilk 518 (910)
T KOG1539|consen 447 --DDINATAVCVS-----FCGNFVFIGYSKGTIDRFNMQSGIHR-KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILK 518 (910)
T ss_pred --cCcceEEEEEe-----ccCceEEEeccCCeEEEEEcccCeee-cccccCccccCceeEEEecCCCceEEEccCcceEE
Confidence 00111111111 11345677888999999999987662 33333456789999999999999999999999999
Q ss_pred EEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeee-cCcceeEEEEeeCCC
Q 002564 450 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNG 528 (907)
Q Consensus 450 i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~s~~~~ 528 (907)
.||.........+. -...+.++..+.....++.+..|-.|+++|..+.+.++.+. +...|+.++|||||+
T Consensus 519 fw~f~~k~l~~~l~---------l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr 589 (910)
T KOG1539|consen 519 FWDFKKKVLKKSLR---------LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR 589 (910)
T ss_pred EEecCCcceeeeec---------cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc
Confidence 99999988777663 45568888888888899999999999999999999999998 558999999999999
Q ss_pred EEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCC-CcEEEEEcC
Q 002564 529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD-GSLRIWDVI 587 (907)
Q Consensus 529 ~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D-g~I~vwd~~ 587 (907)
+|++++.|++|++||+.++.++-.+. -..+++++.|||+|.+|||+..| .-|++|.=.
T Consensus 590 WlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 590 WLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred EEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 99999999999999999999988776 56789999999999999999988 569999643
No 30
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.8e-33 Score=289.29 Aligned_cols=538 Identities=16% Similarity=0.179 Sum_probs=393.2
Q ss_pred CCCcceEEEEEecCeEEEEEcC---eEEEEeCCee---EEEEccc-ccceEEEEee-CCEEEEEecCCcEEEEecCCCCc
Q 002564 54 QLPKKIRALASYRDYTFAAYGN---HIAVVKRAHQ---VATWSRH-SAKVNLLLLF-GEHILSIDIDGNMFIWAFKGIEE 125 (907)
Q Consensus 54 ~~~~~I~~la~~~~~~~~a~g~---~I~vw~~~~~---~~~~~~h-~~~V~~l~~~-g~~l~s~~~dg~v~vWd~~~~~~ 125 (907)
-.|.+|+|||++.+...+|.+. .|.+|+.... ...+.|+ ...|.+++|. |..|+|.+.+|.|.-||+.+.+.
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCce
Confidence 4589999999998876676643 4999985432 2335555 5689999995 99999999999999999999988
Q ss_pred cccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEecCC
Q 002564 126 NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE--FKGWGSSISSCVSSPALDVVAVGCSDG 203 (907)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~--~~~h~~~I~~l~~sp~~~~la~g~~dg 203 (907)
...+...++.+++++.+|.+ ..+++|+.||.+...++..++..+. |....++|.++.|+|++..|+.|+.||
T Consensus 103 ----~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg 176 (691)
T KOG2048|consen 103 ----KYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG 176 (691)
T ss_pred ----eEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc
Confidence 77888888999999999999 8999999999888888888877664 445578999999999999999999999
Q ss_pred eEEEEEccCCceEEEEe-------ecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEE
Q 002564 204 KIHVHNVRYDEELVTFT-------HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHF 276 (907)
Q Consensus 204 ~I~iwd~~~~~~~~~~~-------~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 276 (907)
.|++||..++..++... .....-|.++.|-.++. +++|.+.|+|.+||...+.++.... .|.+.|.+++.
T Consensus 177 ~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t--I~sgDS~G~V~FWd~~~gTLiqS~~-~h~adVl~Lav 253 (691)
T KOG2048|consen 177 VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST--IASGDSAGTVTFWDSIFGTLIQSHS-CHDADVLALAV 253 (691)
T ss_pred eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc--EEEecCCceEEEEcccCcchhhhhh-hhhcceeEEEE
Confidence 99999999998777322 11234578899988875 9999999999999999999999998 99999999999
Q ss_pred ecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhh
Q 002564 277 FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH 356 (907)
Q Consensus 277 ~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 356 (907)
.+++..++++|.|+.|..+...+....+.....+..|...+.+++..++ .+++|+.|..+.+-.....+..... +..
T Consensus 254 ~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~-~~~ 330 (691)
T KOG2048|consen 254 ADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHR-QKN 330 (691)
T ss_pred cCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhh-ccc
Confidence 9999999999999999999877765556666677899999999999977 8999999999888765542211110 000
Q ss_pred hhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeecee-----cceeeecCCCCCCceEEEE
Q 002564 357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL-----GEHILRPCPENPTAVKACT 431 (907)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~-----~~~~~~~~~~~~~~v~~~~ 431 (907)
.. ...+.... .....+..-.....+.+|.+..... ..+.+.........+.+.+
T Consensus 331 ~~-------------p~~~~v~~--------a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~a 389 (691)
T KOG2048|consen 331 LF-------------PASDRVSV--------APENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAA 389 (691)
T ss_pred cc-------------cccceeec--------CccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeec
Confidence 00 00000000 0001111122234444555543311 1333444445568899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe-cCCeEEEEECCCCceee
Q 002564 432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKS 510 (907)
Q Consensus 432 ~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~ 510 (907)
+||+|++++.++-. ..++|.++....+..... .......-....+.|+-++..++.++ .+..+...++.+.....
T Consensus 390 iSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v---~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~ke 465 (691)
T KOG2048|consen 390 ISPDGNLIAISTVS-RTKIYRLQPDPNVKVINV---DDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKE 465 (691)
T ss_pred cCCCCCEEEEeecc-ceEEEEeccCcceeEEEe---ccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhh
Confidence 99999999998643 467777765332222110 01112334567788888887777777 77788888877654332
Q ss_pred ee--e---cCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECC-CCcEEEEEeCCCcEEEE
Q 002564 511 RW--E---VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE-DGKWLLSSGMDGSLRIW 584 (907)
Q Consensus 511 ~~--~---~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp-dg~~l~s~s~Dg~I~vw 584 (907)
.. . .-..|..+..+|+|+++|+.+..|.|.+|++++++.......-...|+.++|+| +-..|+.+..|+.+.-|
T Consensus 466 l~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~ef 545 (691)
T KOG2048|consen 466 LKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEF 545 (691)
T ss_pred hhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEE
Confidence 22 1 226899999999999999999999999999998876554434558899999996 45678888899999999
Q ss_pred EcCCCceeeEee------------eCCceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564 585 DVILARQIDAIH------------VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (907)
Q Consensus 585 d~~~~~~~~~~~------------~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (907)
|++..++-+... ...++..+.|+|............ -+++-|..
T Consensus 546 di~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~a~-w~~~id~~ 601 (691)
T KOG2048|consen 546 DIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYDAH-WSCLIDFS 601 (691)
T ss_pred ecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCccEEEEEcCc-EEEEEecC
Confidence 995433222111 123488899988776655555554 36666654
No 31
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-35 Score=293.65 Aligned_cols=324 Identities=16% Similarity=0.314 Sum_probs=281.7
Q ss_pred CCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCC--CeEE--EEEc----------CCCCCEEEEEEcCCCCEEEEEec
Q 002564 136 DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST--KKKL--YEFK----------GWGSSISSCVSSPALDVVAVGCS 201 (907)
Q Consensus 136 ~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~--~~~~--~~~~----------~h~~~I~~l~~sp~~~~la~g~~ 201 (907)
|...+..|+|+|... ..+++|+.+-+.++|++.. .... ..|+ .....|++++|+.+|..||+|+.
T Consensus 177 ~~~~V~~~~WnP~~~-~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 177 HESEVFICAWNPLRD-GLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred CCCceEEEecCchhh-hhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 777788999999873 3789999999999999864 1111 1111 12468999999999999999999
Q ss_pred CCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCC
Q 002564 202 DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP 281 (907)
Q Consensus 202 dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 281 (907)
||.++||+.. |..+.++..| +++|.++.|+.+|. ++++++.||++.+||..++.....+. -|..+-..+.|-.+.
T Consensus 256 ~G~~riw~~~-G~l~~tl~~H-kgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g~~~q~f~-~~s~~~lDVdW~~~~- 330 (524)
T KOG0273|consen 256 DGEARIWNKD-GNLISTLGQH-KGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTGTVKQQFE-FHSAPALDVDWQSND- 330 (524)
T ss_pred CcEEEEEecC-chhhhhhhcc-CCceEEEEEcCCCC-EEEeccCCccEEEEeccCceEEEeee-eccCCccceEEecCc-
Confidence 9999999965 7888888776 89999999999999 89999999999999999999998888 788887889997655
Q ss_pred EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHH
Q 002564 282 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRA 361 (907)
Q Consensus 282 ~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 361 (907)
.+++++.|+.|+++.++.. +...++.||.++|.++.|.|.|.+|++++.|+++++|+.........+.
T Consensus 331 ~F~ts~td~~i~V~kv~~~----~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~-------- 398 (524)
T KOG0273|consen 331 EFATSSTDGCIHVCKVGED----RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ-------- 398 (524)
T ss_pred eEeecCCCceEEEEEecCC----CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh--------
Confidence 6899999999999988765 5677788999999999999999999999999999999976544332221
Q ss_pred hhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCC-----
Q 002564 362 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG----- 436 (907)
Q Consensus 362 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----- 436 (907)
.|...|..+.|+|.|
T Consensus 399 ------------------------------------------------------------~Hskei~t~~wsp~g~v~~n 418 (524)
T KOG0273|consen 399 ------------------------------------------------------------AHSKEIYTIKWSPTGPVTSN 418 (524)
T ss_pred ------------------------------------------------------------hhccceeeEeecCCCCccCC
Confidence 344677778888765
Q ss_pred ----CEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeee
Q 002564 437 ----NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW 512 (907)
Q Consensus 437 ----~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 512 (907)
..++.++.|++|++||+..+.++..+. .|..+|.+++|+|+|+++++|+.||.|.+|+.+++++.+.+
T Consensus 419 ~~~~~~l~sas~dstV~lwdv~~gv~i~~f~--------kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 419 PNMNLMLASASFDSTVKLWDVESGVPIHTLM--------KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred CcCCceEEEeecCCeEEEEEccCCceeEeec--------cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee
Confidence 468999999999999999999999986 89999999999999999999999999999999999999999
Q ss_pred ecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcc
Q 002564 513 EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV 545 (907)
Q Consensus 513 ~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~ 545 (907)
...+.|..++|+.+|.+|.++..|+.+++.|+.
T Consensus 491 ~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 491 QGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999999999999999999999874
No 32
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-34 Score=293.94 Aligned_cols=463 Identities=14% Similarity=0.206 Sum_probs=343.1
Q ss_pred CCCCcceEEEEEecCeEEEEE---cCeEEEEeCCee--EEEEcccccceEEEEe--eCCEEEEEecCCcEEEEecCCCCc
Q 002564 53 PQLPKKIRALASYRDYTFAAY---GNHIAVVKRAHQ--VATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEE 125 (907)
Q Consensus 53 ~~~~~~I~~la~~~~~~~~a~---g~~I~vw~~~~~--~~~~~~h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~ 125 (907)
..+...|.++.++|..-++.+ .++|.+|+..+. ++.+.-..-+|.+..| -.+|+++|+.|..|+||+..+++.
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek 89 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK 89 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccccee
Confidence 346789999999999766544 677999986554 5567777788888876 478999999999999999999999
Q ss_pred cccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCC-eEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCC
Q 002564 126 NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-KKLYEFKGWGSSISSCVSSP-ALDVVAVGCSDG 203 (907)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~h~~~I~~l~~sp-~~~~la~g~~dg 203 (907)
+..++.|...+.+.+.||.. .+++++|.|-+|++||.+.+ .+.++|.||..-|.+++|.| |.+.+|+++-|+
T Consensus 90 ----V~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 90 ----VKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred ----eEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 99999999999999999999 79999999999999999754 78999999999999999999 467999999999
Q ss_pred eEEEEEccCCceEEEEeecCCCCEEEEEEecCC-CCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCE
Q 002564 204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG-QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV 282 (907)
Q Consensus 204 ~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg-~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 282 (907)
+|+||.+.+..+..++.+| ...|.|+.|-+.| +++|++|+.|.+|+|||.++..++.++. +|...|..+.|+|.-++
T Consensus 164 TVKVWslgs~~~nfTl~gH-ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe-GHt~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGH-EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE-GHTNNVSFVFFHPELPI 241 (794)
T ss_pred cEEEEEcCCCCCceeeecc-ccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh-cccccceEEEecCCCcE
Confidence 9999999999999999976 7889999998865 4699999999999999999999999999 99999999999999999
Q ss_pred EEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHh
Q 002564 283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR 362 (907)
Q Consensus 283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 362 (907)
+++|+.||++|+|+-.+ .++...+.-.-..++||+..+.+..++.|..+|.+.+ .+-.+.+...+..
T Consensus 242 iisgsEDGTvriWhs~T----y~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd~-------- 308 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKT----YKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMDS-------- 308 (794)
T ss_pred EEEecCCccEEEecCcc----eehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeecC--------
Confidence 99999999999996443 3555666666789999999998888888888886654 3333322222111
Q ss_pred hccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeec-ee-cceeeecC----CCCCCceEEEEEcCCC
Q 002564 363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF-VL-GEHILRPC----PENPTAVKACTISACG 436 (907)
Q Consensus 363 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~-~~-~~~~~~~~----~~~~~~v~~~~~s~~g 436 (907)
.. .-+-+.+..-..+.+-.+... .. ....++.. ..-.-....++-+|+|
T Consensus 309 -------------------~g------KIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNG 363 (794)
T KOG0276|consen 309 -------------------NG------KIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNG 363 (794)
T ss_pred -------------------Cc------cEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCC
Confidence 00 000001110001111100000 00 00000000 0001223467889999
Q ss_pred CEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCc
Q 002564 437 NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC 516 (907)
Q Consensus 437 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 516 (907)
++++++ .||.-.+|..-.-+ ..+.+.-....|.++....+.--.++.|+++ ++.+....+....
T Consensus 364 rfV~Vc-gdGEyiIyTala~R-------------nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~ 427 (794)
T KOG0276|consen 364 RFVVVC-GDGEYIIYTALALR-------------NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDM 427 (794)
T ss_pred cEEEEe-cCccEEEEEeeehh-------------hcccccceeEEEcCCCCeEEEEecCCceEEE--ecceecccccccc
Confidence 988876 56777777632111 1345667788899997777777778889988 6666666665543
Q ss_pred ceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEE
Q 002564 517 SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (907)
Q Consensus 517 ~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd 585 (907)
.. -.+ - |..|.....++.+++||.+++++++++.-. ...+.|+.+|.+++.++.|. -.+..
T Consensus 428 ~~--e~i-~-gg~Llg~~ss~~~~fydW~~~~lVrrI~v~---~k~v~w~d~g~lVai~~d~S-fyil~ 488 (794)
T KOG0276|consen 428 SA--EGI-F-GGPLLGVRSSDFLCFYDWESGELVRRIEVT---SKHVYWSDNGELVAIAGDDS-FYILK 488 (794)
T ss_pred ce--eee-c-CCceEEEEeCCeEEEEEcccceEEEEEeec---cceeEEecCCCEEEEEecCc-eeEEE
Confidence 31 111 1 344444455678999999999999998743 44679999999988887665 34443
No 33
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.2e-34 Score=300.56 Aligned_cols=500 Identities=14% Similarity=0.161 Sum_probs=363.3
Q ss_pred CCcceEEEEEecCeEEEEEc---CeEEEEe--CCeeEEEEcccccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccc
Q 002564 55 LPKKIRALASYRDYTFAAYG---NHIAVVK--RAHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENL 127 (907)
Q Consensus 55 ~~~~I~~la~~~~~~~~a~g---~~I~vw~--~~~~~~~~~~h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~ 127 (907)
....+..++|+|..-++.++ +.|.+|| .+..+..+.+|.++|..+.| .+..++||+.|-.|+||+..+.++
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc-- 85 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC-- 85 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee--
Confidence 45678999999998777664 4599998 57788889999999999997 689999999999999999999999
Q ss_pred cceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Q 002564 128 APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHV 207 (907)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~i 207 (907)
+.++.+|...+.++.||+.- ..|+++|.|.+|+|||..+++++..+.||...|.|..|+|..+.+++++-|.+|+|
T Consensus 86 --lftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 86 --LFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred --hhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 77888899999999999987 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCC----------------------------ceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCce-
Q 002564 208 HNVRYD----------------------------EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR- 258 (907)
Q Consensus 208 wd~~~~----------------------------~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~- 258 (907)
||+..- ..+..+..+|...|..++|+|.-. ++++|+.|..|++|.+...+
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccc
Confidence 998511 122333345678899999999988 99999999999999987654
Q ss_pred -eeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCC
Q 002564 259 -LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337 (907)
Q Consensus 259 -~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~ 337 (907)
.+.+.+ +|.+.|.++-|+|...++++.|.|++|++||++..+ .+.++....+..+.++-+|..+.++.| .|+-
T Consensus 241 WEvDtcr-gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt----~v~tfrrendRFW~laahP~lNLfAAg-HDsG 314 (1202)
T KOG0292|consen 241 WEVDTCR-GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT----SVQTFRRENDRFWILAAHPELNLFAAG-HDSG 314 (1202)
T ss_pred eeehhhh-cccCCcceEEecCccceeEecCCCccEEEEeccccc----ceeeeeccCCeEEEEEecCCcceeeee-cCCc
Confidence 355566 999999999999999999999999999999998774 456666667889999999998766655 5666
Q ss_pred EEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeecee-ccee
Q 002564 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL-GEHI 416 (907)
Q Consensus 338 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~-~~~~ 416 (907)
+.+|.+.......-+.. +.+..-. +..++.+|+.+.+- .-..
T Consensus 315 m~VFkleRErpa~~v~~------------------------------------n~LfYvk-d~~i~~~d~~t~~d~~v~~ 357 (1202)
T KOG0292|consen 315 MIVFKLERERPAYAVNG------------------------------------NGLFYVK-DRFIRSYDLRTQKDTAVAS 357 (1202)
T ss_pred eEEEEEcccCceEEEcC------------------------------------CEEEEEc-cceEEeeeccccccceeEe
Confidence 88888775544333222 1122222 67788888876322 1222
Q ss_pred eecCCCCCCceEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEec
Q 002564 417 LRPCPENPTAVKACTISACGNFAVLGT--AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY 494 (907)
Q Consensus 417 ~~~~~~~~~~v~~~~~s~~g~~l~~g~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 494 (907)
++.......++.++.++|..+.+.+++ .+|.-.++.+........-.. . .........+-.. .+++.+---.
T Consensus 358 lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~---~--~~k~tG~~a~fva-rNrfavl~k~ 431 (1202)
T KOG0292|consen 358 LRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGK---D--VKKGTGEGALFVA-RNRFAVLDKS 431 (1202)
T ss_pred ccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCch---h--hhcCCCCceEEEE-ecceEEEEec
Confidence 232223346788999999887776664 345666666544321111000 0 0011112222222 2223222223
Q ss_pred CCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEE
Q 002564 495 HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS 574 (907)
Q Consensus 495 dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s 574 (907)
+..+.+=++.+. ..+.+........+-+...|.+|+.. ...|.+||++..+.+..+. ...|.-+.||+|+.+++-
T Consensus 432 ~~~v~ik~l~N~-vtkkl~~~~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~vAl 506 (1202)
T KOG0292|consen 432 NEQVVIKNLKNK-VTKKLLLPESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRVAL 506 (1202)
T ss_pred CcceEEecccch-hhhcccCcccccceeeccCccEEEEc--CCeEEEEEeecceEEEEEe--cCceeEEEEcCccchhhh
Confidence 444545454432 22233333455566666666666543 4579999999988888776 467889999999988876
Q ss_pred EeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEE
Q 002564 575 SGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAH 617 (907)
Q Consensus 575 ~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~ 617 (907)
-+. .+|.|.+.. -..+..+...-.|.+-+|..+|-+|.+..
T Consensus 507 l~K-h~i~i~~kk-L~l~~sihEtiriksgawde~gVfiYtT~ 547 (1202)
T KOG0292|consen 507 LSK-HTITIADKK-LELLCSIHETIRIKSGAWDEDGVFIYTTL 547 (1202)
T ss_pred ccc-ceEEEEecc-hhheecchheeEeeeceeccCceEEEEeh
Confidence 654 568888743 44555554444577888888887777654
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.2e-34 Score=278.86 Aligned_cols=340 Identities=19% Similarity=0.270 Sum_probs=288.0
Q ss_pred eeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564 130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209 (907)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd 209 (907)
+.++..|...+..+..+|+. +.+++|+.|..-.+|++.+|.....+.+|+..|+++.||.+|.+||+|.-+|.|+||.
T Consensus 57 ~~tF~~H~~svFavsl~P~~--~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNN--NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred eeehhhcCCceEEEEeCCCC--ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 55677788889999999966 8999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCC
Q 002564 210 VRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD 289 (907)
Q Consensus 210 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d 289 (907)
..++.....+... -..+.-+.|+|.+. +|+.|+.||.+.+|.+.++...+.+. +|..++++-.|.|+|+.++++..|
T Consensus 135 ~stg~~~~~~~~e-~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~-Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 135 VSTGGEQWKLDQE-VEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMS-GHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred cccCceEEEeecc-cCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEec-CCCCCcccccccCCCceEEEEecC
Confidence 9999998888744 56799999999888 99999999999999999988888888 999999999999999999999999
Q ss_pred CcEEEEEccCCCCCcceeEecc-CCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchh
Q 002564 290 NSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKE 368 (907)
Q Consensus 290 ~~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (907)
|+|++|+..+.. .+.... .......++.++..+..++.|+.++.+++-+..+++.........
T Consensus 212 gti~~Wn~ktg~----p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~------------ 275 (399)
T KOG0296|consen 212 GTIIVWNPKTGQ----PLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTV------------ 275 (399)
T ss_pred ceEEEEecCCCc----eeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCC------------
Confidence 999999877653 222222 224567788898899999999999999988876655443322100
Q ss_pred hhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcE
Q 002564 369 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI 448 (907)
Q Consensus 369 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i 448 (907)
.............|.++.++..=...++|+-||+|
T Consensus 276 ---------------------------------------------~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i 310 (399)
T KOG0296|consen 276 ---------------------------------------------PELKPSQEELDESVESIPSSSKLPLAACGSVDGTI 310 (399)
T ss_pred ---------------------------------------------ccccccchhhhhhhhhcccccccchhhcccccceE
Confidence 00000000112345555566666788999999999
Q ss_pred EEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCC
Q 002564 449 ERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVN 527 (907)
Q Consensus 449 ~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~ 527 (907)
.+||+.....+..+ .|...|+.+.|.+ ..+|++++.+|.|+.||.++|+++..+..+ .+|.+++++|+.
T Consensus 311 ~iyD~a~~~~R~~c---------~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~ 380 (399)
T KOG0296|consen 311 AIYDLAASTLRHIC---------EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQK 380 (399)
T ss_pred EEEecccchhheec---------cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCC
Confidence 99999999888877 6999999999999 789999999999999999999999999877 899999999999
Q ss_pred CEEEEEeCCCeEEEEEcc
Q 002564 528 GLLATVADDLVIRLFDVV 545 (907)
Q Consensus 528 ~~la~~~~dg~I~v~d~~ 545 (907)
+++++++.|++.+||++.
T Consensus 381 ~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 381 RLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cEEEEecCCCeEEEEecC
Confidence 999999999999999864
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-35 Score=285.39 Aligned_cols=288 Identities=23% Similarity=0.386 Sum_probs=258.1
Q ss_pred EEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEE
Q 002564 216 LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295 (907)
Q Consensus 216 ~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw 295 (907)
...+.+ +..+|+.+-|+|+-. ++++++.|++|++||..++++...++ +|...|..+.|+..|+++++++.|-.+++|
T Consensus 101 ~~~l~g-~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~Lr-GHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 101 VQKLAG-HRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERSLR-GHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred hhhhhc-cccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhhhh-ccccceeEEEEecCccEEEecCCccchhhe
Confidence 344444 478999999999987 99999999999999999999999999 999999999999999999999999999999
Q ss_pred EccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCc
Q 002564 296 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP 375 (907)
Q Consensus 296 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (907)
|++.. .++++...+|...|.++.|-|.|.++++++.|.+|+.|++.++-+
T Consensus 178 d~~~~---~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c--------------------------- 227 (406)
T KOG0295|consen 178 DFDTF---FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC--------------------------- 227 (406)
T ss_pred eHHHH---HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccccee---------------------------
Confidence 98764 467788889999999999999999999999999988888754432
Q ss_pred eeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 002564 376 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS 455 (907)
Q Consensus 376 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~ 455 (907)
T Consensus 228 -------------------------------------------------------------------------------- 227 (406)
T KOG0295|consen 228 -------------------------------------------------------------------------------- 227 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeC--------
Q 002564 456 GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRV-------- 526 (907)
Q Consensus 456 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~-------- 526 (907)
+..+ .+|...|..+..+.||.++++++.|.++++|-+.++++...+..+ .++.+++|.|.
T Consensus 228 ---v~t~--------~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~ 296 (406)
T KOG0295|consen 228 ---VKTF--------PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISE 296 (406)
T ss_pred ---EEec--------cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhh
Confidence 2233 388889999999999999999999999999999999877776544 78888888764
Q ss_pred -------CCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCC
Q 002564 527 -------NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV 599 (907)
Q Consensus 527 -------~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~ 599 (907)
+.++.+++.|++|++||+.++.++.++.||.+.|..++|+|.|+||+++..|+++++||+.++++...+..|.
T Consensus 297 at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~ 376 (406)
T KOG0295|consen 297 ATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHE 376 (406)
T ss_pred ccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCc
Confidence 2589999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred c-eEEEEECCCCceEEEEEecCCeEEEeec
Q 002564 600 S-ITALSLSPNMDVLATAHVDQNGVYLWVN 628 (907)
Q Consensus 600 ~-v~~l~~spdg~~lat~~~d~~~i~lW~~ 628 (907)
. |+++.|+.+-.+++||+.|. ++++|.-
T Consensus 377 hfvt~lDfh~~~p~VvTGsVdq-t~KvwEc 405 (406)
T KOG0295|consen 377 HFVTSLDFHKTAPYVVTGSVDQ-TVKVWEC 405 (406)
T ss_pred ceeEEEecCCCCceEEeccccc-eeeeeec
Confidence 6 99999999999999999999 6999974
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.3e-34 Score=261.89 Aligned_cols=293 Identities=18% Similarity=0.300 Sum_probs=236.5
Q ss_pred eEEEEEcCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEEccC---CceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCC
Q 002564 172 KKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRY---DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG 247 (907)
Q Consensus 172 ~~~~~~~~h~~~I~~l~~sp~-~~~la~g~~dg~I~iwd~~~---~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg 247 (907)
..++.+++|.+++..++|+|- |..||+|+.|..|++|+... -.+...+...|+..|.+++|+|.|+ +|++|+.|.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~ 83 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDA 83 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeeccc
Confidence 356788999999999999998 88999999999999999984 3455556667789999999999999 999999999
Q ss_pred cEEEEECCCc--eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecC
Q 002564 248 VISIWNLEKR--RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325 (907)
Q Consensus 248 ~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 325 (907)
++.||.-..+ +++.++. +|.+.|.+++|+++|++||+++.|++|-+|.++ .+....+...+.+|...|..+.|+|.
T Consensus 84 t~~Iw~k~~~efecv~~lE-GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d-eddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLE-GHENEVKCVAWSASGNYLATCSRDKSVWIWEID-EDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred eEEEeecCCCceeEEeeee-ccccceeEEEEcCCCCEEEEeeCCCeEEEEEec-CCCcEEEEeeeccccccccEEEEcCC
Confidence 9999987655 7788888 999999999999999999999999999999988 45567888999999999999999998
Q ss_pred CCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEE
Q 002564 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 405 (907)
Q Consensus 326 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w 405 (907)
..+|++++.|.+|++|+-..
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~------------------------------------------------------------ 181 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDED------------------------------------------------------------ 181 (312)
T ss_pred cceeEEeccCCeEEEEeecC------------------------------------------------------------
Confidence 88999999999999997431
Q ss_pred EeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCC
Q 002564 406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST 485 (907)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 485 (907)
++.+..+. .+ .+|...|.+++|++.
T Consensus 182 -----------------------------dddW~c~~------------------tl--------~g~~~TVW~~~F~~~ 206 (312)
T KOG0645|consen 182 -----------------------------DDDWECVQ------------------TL--------DGHENTVWSLAFDNI 206 (312)
T ss_pred -----------------------------CCCeeEEE------------------Ee--------cCccceEEEEEecCC
Confidence 11111111 11 267778888888888
Q ss_pred CCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccc------eeEE-EeecCCC
Q 002564 486 NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL------RMVR-KFEGHTD 558 (907)
Q Consensus 486 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~------~~~~-~~~~h~~ 558 (907)
|..|++++.|++++||...+. -...+..++..+.|. +..||+++.|+.|++|.-... +++. .-..|..
T Consensus 207 G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~ 281 (312)
T KOG0645|consen 207 GSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV 281 (312)
T ss_pred CceEEEecCCcceEeeeeccC---cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc
Confidence 888888888888888875421 111223566777776 667888888888888865532 1111 2346889
Q ss_pred CeeeEEECCC-CcEEEEEeCCCcEEEEEcC
Q 002564 559 RITDFCFSED-GKWLLSSGMDGSLRIWDVI 587 (907)
Q Consensus 559 ~I~~l~fspd-g~~l~s~s~Dg~I~vwd~~ 587 (907)
.|++++|.|. ...|++++.||.|++|.+.
T Consensus 282 dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 282 DVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999999994 5789999999999999875
No 37
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3e-35 Score=311.37 Aligned_cols=281 Identities=21% Similarity=0.364 Sum_probs=241.2
Q ss_pred eEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEE
Q 002564 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251 (907)
Q Consensus 172 ~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~i 251 (907)
-+.+++......++|..|++++..+|.|..|..|++|.+... .+..+... ++-. .+=+++.|-.+.+
T Consensus 369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~--------~~l~----~~d~~sad~~~~~ 435 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDA--------SDLS----NIDTESADVDVDM 435 (707)
T ss_pred EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccch--------hhhc----cccccccchhhhh
Confidence 456677666788999999999999999999999999998854 33333322 1111 1223444555777
Q ss_pred EECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEE
Q 002564 252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331 (907)
Q Consensus 252 wd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s 331 (907)
.|-.+.....++. +|.++|..+.|+|+.++|++++.|+++|+|.+++. ..+-...||..||+.+.|+|.|-+++|
T Consensus 436 ~D~~~~~~~~~L~-GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~----s~~V~y~GH~~PVwdV~F~P~GyYFat 510 (707)
T KOG0263|consen 436 LDDDSSGTSRTLY-GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW----SCLVIYKGHLAPVWDVQFAPRGYYFAT 510 (707)
T ss_pred ccccCCceeEEee-cCCCceeeeeecccccceeeccCCcceeeeecccc----eeEEEecCCCcceeeEEecCCceEEEe
Confidence 7877777777777 99999999999999999999999999999999876 456667799999999999999999999
Q ss_pred EeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeece
Q 002564 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411 (907)
Q Consensus 332 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~ 411 (907)
++.|++-++|.......
T Consensus 511 as~D~tArLWs~d~~~P--------------------------------------------------------------- 527 (707)
T KOG0263|consen 511 ASHDQTARLWSTDHNKP--------------------------------------------------------------- 527 (707)
T ss_pred cCCCceeeeeecccCCc---------------------------------------------------------------
Confidence 99999999998643221
Q ss_pred ecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEE
Q 002564 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS 491 (907)
Q Consensus 412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 491 (907)
.+.+ .+|-+.|.|+.|+|+..++++
T Consensus 528 -----------------------------------------------lRif--------aghlsDV~cv~FHPNs~Y~aT 552 (707)
T KOG0263|consen 528 -----------------------------------------------LRIF--------AGHLSDVDCVSFHPNSNYVAT 552 (707)
T ss_pred -----------------------------------------------hhhh--------cccccccceEEECCccccccc
Confidence 1112 389999999999999999999
Q ss_pred EecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCc
Q 002564 492 AGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK 570 (907)
Q Consensus 492 ~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~ 570 (907)
|+.|.++|+||..+|..++.+.++ ++|.+++|||+|++||+|+.||.|.+||+.+++++..+.+|++.|.++.||.||.
T Consensus 553 GSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~ 632 (707)
T KOG0263|consen 553 GSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGN 632 (707)
T ss_pred CCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCC
Confidence 999999999999999999999776 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCC
Q 002564 571 WLLSSGMDGSLRIWDVIL 588 (907)
Q Consensus 571 ~l~s~s~Dg~I~vwd~~~ 588 (907)
.||+|+.|.+|++||+..
T Consensus 633 vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 633 VLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEEecCCCCeEEEEEchh
Confidence 999999999999999864
No 38
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.1e-35 Score=312.62 Aligned_cols=283 Identities=25% Similarity=0.383 Sum_probs=235.8
Q ss_pred eEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEE
Q 002564 215 ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM 294 (907)
Q Consensus 215 ~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~v 294 (907)
+..++... ...++|..|++|+. ++|.|..|..|++|.+...++ ..++ +...+. .+=+.+.|-.+.+
T Consensus 370 c~YT~~nt-~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl-~~lk--~~~~l~---------~~d~~sad~~~~~ 435 (707)
T KOG0263|consen 370 CMYTFHNT-YQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKL-KKLK--DASDLS---------NIDTESADVDVDM 435 (707)
T ss_pred EEEEEEEc-CCcceeEeecCCcc-hhhccccccEEEEEecchhhh-cccc--chhhhc---------cccccccchhhhh
Confidence 34445444 46799999999999 999999999999999876533 2332 221111 1223344444555
Q ss_pred EEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccC
Q 002564 295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 374 (907)
Q Consensus 295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (907)
.|-+.. ...+.+.||.++|..+.|+|+.++|++++.|+++|+|++.+....
T Consensus 436 ~D~~~~----~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~------------------------- 486 (707)
T KOG0263|consen 436 LDDDSS----GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCL------------------------- 486 (707)
T ss_pred ccccCC----ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeE-------------------------
Confidence 544333 334557799999999999999999999999999999997542211
Q ss_pred ceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 002564 375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ 454 (907)
Q Consensus 375 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~ 454 (907)
+
T Consensus 487 ------------------------------------------------------------------V------------- 487 (707)
T KOG0263|consen 487 ------------------------------------------------------------------V------------- 487 (707)
T ss_pred ------------------------------------------------------------------E-------------
Confidence 0
Q ss_pred CCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEE
Q 002564 455 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATV 533 (907)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~ 533 (907)
.+ .+|..+|..+.|+|.|-+++|++.|++-++|.....++.+.+..+ +.+.|+.|||++.++|+|
T Consensus 488 ------~y--------~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTG 553 (707)
T KOG0263|consen 488 ------IY--------KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATG 553 (707)
T ss_pred ------Ee--------cCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccC
Confidence 11 389999999999999999999999999999999999999988777 899999999999999999
Q ss_pred eCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCc-eEEEEECCCCce
Q 002564 534 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDV 612 (907)
Q Consensus 534 ~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~-v~~l~~spdg~~ 612 (907)
+.|.+|++||+.+|..++.|.||.++|++++|||+|++|++|+.||.|.+||+.+|+++..+..|.. |.++.||.||..
T Consensus 554 SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~v 633 (707)
T KOG0263|consen 554 SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNV 633 (707)
T ss_pred CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCE
Confidence 9999999999999999999999999999999999999999999999999999999999999988865 999999999999
Q ss_pred EEEEEecCCeEEEeeccccccc
Q 002564 613 LATAHVDQNGVYLWVNRCMFSG 634 (907)
Q Consensus 613 lat~~~d~~~i~lW~~~~~~~~ 634 (907)
||+++.|. +|++||+...+..
T Consensus 634 Lasgg~Dn-sV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 634 LASGGADN-SVRLWDLTKVIEL 654 (707)
T ss_pred EEecCCCC-eEEEEEchhhccc
Confidence 99999998 7999998654443
No 39
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.5e-34 Score=283.56 Aligned_cols=443 Identities=15% Similarity=0.262 Sum_probs=324.5
Q ss_pred CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC
Q 002564 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (907)
Q Consensus 224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 303 (907)
...|++++|+|..++-+|+.+ .-.+.+|+..+......+. .....|.++.|..||++|++|+..|.|+++|+.+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~s-rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--- 100 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFS-RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--- 100 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHH-hhccceeEEEeecCCeEEEccCCcCcEEEeccccH---
Confidence 368999999998776666665 4579999999888877776 67788999999999999999999999999985442
Q ss_pred cceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeec
Q 002564 304 PRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382 (907)
Q Consensus 304 ~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (907)
.+++.+.+|+.++..+.|+| ++..+++|+.|+.+++||+.+..
T Consensus 101 -~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~----------------------------------- 144 (487)
T KOG0310|consen 101 -VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY----------------------------------- 144 (487)
T ss_pred -HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-----------------------------------
Confidence 57888899999999999999 66677788888888889874321
Q ss_pred ccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceee
Q 002564 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (907)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~ 462 (907)
+ ..+ +
T Consensus 145 -----------------------------------------------------------------v-~~~---------l 149 (487)
T KOG0310|consen 145 -----------------------------------------------------------------V-QAE---------L 149 (487)
T ss_pred -----------------------------------------------------------------E-EEE---------e
Confidence 0 111 1
Q ss_pred eccccccccCcCCcEEEEEEcCCC-CEEEEEecCCeEEEEECCCC-ceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEE
Q 002564 463 LDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540 (907)
Q Consensus 463 ~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~ 540 (907)
.+|.+.|.+.+++|.+ .+++|||.||.|++||+... ..+.++.++.+|..+.+-|.|.++|+++. ..|+
T Consensus 150 --------~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vk 220 (487)
T KOG0310|consen 150 --------SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVK 220 (487)
T ss_pred --------cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEE
Confidence 3899999999999966 48899999999999999977 78889999999999999999999999875 5899
Q ss_pred EEEcccc-eeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEec
Q 002564 541 LFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD 619 (907)
Q Consensus 541 v~d~~~~-~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d 619 (907)
|||+.+| +.+..+..|...|||+++..++..|++++.|+.|++||+.+.+.+..+..+++|.+++.+|+++.++.|-.|
T Consensus 221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred EEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEeccc
Confidence 9999955 556666669999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEeecccccccCCCCccCCCCCcceeecCCCccCCCCccCCCCCCCCCccCCCCCCCCCCCCCccccccCceeecC
Q 002564 620 QNGVYLWVNRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQIPDLVTLSL 699 (907)
Q Consensus 620 ~~~i~lW~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tls~ 699 (907)
|. +.+=.. .. ++
T Consensus 301 Gl-v~~rr~-----------~~--k~------------------------------------------------------ 312 (487)
T KOG0310|consen 301 GL-VSIRRR-----------EV--KK------------------------------------------------------ 312 (487)
T ss_pred ce-eeeehh-----------hc--cc------------------------------------------------------
Confidence 83 322210 00 00
Q ss_pred CchhhhhhccchHHHhhhCCCCCCCCCCC--CCCccccCCCCCCcccccCCCCCCcccchhhhccCCCCCCCCccHHHHH
Q 002564 700 LPKSQWQSLINLDIIKARNKPIEPPKKPE--KAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTKPDIPVSQFIQL 777 (907)
Q Consensus 700 ~p~~~~~~l~~l~~i~~r~kp~~~~~~~~--~~pffl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (907)
||...|+.+. ..-||-..... +. .. ++++--....+++ ..+.|-+.
T Consensus 313 -------------------k~s~~~~~r~~r~~~~~v~~r~~-~~----~~--~~ddiv~n~~~r~------~L~~~Dk~ 360 (487)
T KOG0310|consen 313 -------------------KPSKEPKRRADRSDGFFVKVRGQ-NY----KG--QKDDIVVNEVKRL------KLTYFDKR 360 (487)
T ss_pred -------------------CCCccccccccccccceEeeecc-cc----cc--ccceeEecccccc------CCchHHHH
Confidence 0000011110 01111111000 00 00 0000000000000 01122233
Q ss_pred Hhh---------ccc-cCChHHHHHHHHhC-CCCcchheeccccccCCCccccccCcchHHHHHHHHHHHHHHHhcCCCH
Q 002564 778 LHS---------CAE-MKNFSAFTDYIKSL-SPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNF 846 (907)
Q Consensus 778 l~~---------~~~-~~~~~~~~~~l~~~-~~s~~~~ei~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (907)
|.+ ..+ ..+...++.+|+.| ---++-..+.. -+..+|..+|+||.+.|...|-+
T Consensus 361 Lk~F~~kkALd~vl~~~~~pelvvavl~eL~~Rg~l~~AL~g---------------rde~eL~~lLnfl~~~l~~~rf~ 425 (487)
T KOG0310|consen 361 LKQFKHKKALDHVLEPKKDPELVVAVLSELVHRGGLRRALAG---------------RDESELAPLLNFLVKNLTVVRFA 425 (487)
T ss_pred HhhhhHHHHHHHHhcccCChhHHHHHHHHHHHhhHHHHHhcC---------------ccHHHHHHHHHHHHhhccchhhH
Confidence 322 111 22334444444443 12222222221 22488999999999999999999
Q ss_pred HhHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHhhccceeeehhccccCC
Q 002564 847 EFIQAVIRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSNSQL 907 (907)
Q Consensus 847 ~~~~~~~~~~l~~h~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (907)
..+.-+.+.+|-+.+..|..+|.|.+.+..|+..++++ -++++.+...++||+-|.++.|
T Consensus 426 ~~L~~~~~~iLd~Y~~~i~~s~~l~k~i~~L~~~V~~E-v~~q~ellr~~G~ldmL~~~t~ 485 (487)
T KOG0310|consen 426 SILMEVVSVILDLYARDIEGSPMLAKLIQALRGKVEQE-VRVQKELLRLIGMLDMLGSITM 485 (487)
T ss_pred HHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHhhc
Confidence 99999999999999999999999999999999999655 4677777888899888876643
No 40
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-34 Score=277.83 Aligned_cols=307 Identities=20% Similarity=0.350 Sum_probs=268.2
Q ss_pred CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcE
Q 002564 170 TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI 249 (907)
Q Consensus 170 ~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I 249 (907)
.....+.+.+|..+|+.+-|+|+-..+++++.|++|++||..+++....+++| ...+..++|+..|+ ++++++.|-.+
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGH-t~sv~di~~~a~Gk-~l~tcSsDl~~ 174 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGH-TDSVFDISFDASGK-YLATCSSDLSA 174 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcc-ccceeEEEEecCcc-EEEecCCccch
Confidence 34566778889999999999999999999999999999999999998888877 66799999999998 99999999889
Q ss_pred EEEECCC-ceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCE
Q 002564 250 SIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH 328 (907)
Q Consensus 250 ~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~ 328 (907)
.+||..+ .+++..+. +|...|.++.|.|.|.++++++.|++|+.|+++++ -++.++.+|...|..++.+.||..
T Consensus 175 ~LWd~~~~~~c~ks~~-gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg----~cv~t~~~h~ewvr~v~v~~DGti 249 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSLI-GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG----YCVKTFPGHSEWVRMVRVNQDGTI 249 (406)
T ss_pred hheeHHHHHHHHHHhc-CcccceeeEEEEecCCeeeecccccceeEEecccc----eeEEeccCchHhEEEEEecCCeeE
Confidence 9999987 46677776 89999999999999999999999999999999987 678999999999999999999999
Q ss_pred EEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEee
Q 002564 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408 (907)
Q Consensus 329 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~ 408 (907)
+++++.|.++++|-+.+.++..++
T Consensus 250 ~As~s~dqtl~vW~~~t~~~k~~l-------------------------------------------------------- 273 (406)
T KOG0295|consen 250 IASCSNDQTLRVWVVATKQCKAEL-------------------------------------------------------- 273 (406)
T ss_pred EEecCCCceEEEEEeccchhhhhh--------------------------------------------------------
Confidence 999999999999998776544332
Q ss_pred eceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCE
Q 002564 409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL 488 (907)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 488 (907)
..|..++.+++|.|...+=-+... .+.. ..+++
T Consensus 274 ------------R~hEh~vEci~wap~~~~~~i~~a--------------------------t~~~---------~~~~~ 306 (406)
T KOG0295|consen 274 ------------REHEHPVECIAWAPESSYPSISEA--------------------------TGST---------NGGQV 306 (406)
T ss_pred ------------hccccceEEEEecccccCcchhhc--------------------------cCCC---------CCccE
Confidence 245577888888775431100000 0110 14579
Q ss_pred EEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECC
Q 002564 489 MISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE 567 (907)
Q Consensus 489 l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp 567 (907)
+.+++.|++|++||+.++.++.++..+ ..|..++|+|.|++|+++.+|+++++||++++++...+..|..-|+++.|..
T Consensus 307 l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~ 386 (406)
T KOG0295|consen 307 LGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK 386 (406)
T ss_pred EEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC
Confidence 999999999999999999999988766 8999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEc
Q 002564 568 DGKWLLSSGMDGSLRIWDV 586 (907)
Q Consensus 568 dg~~l~s~s~Dg~I~vwd~ 586 (907)
+..+++||+-|.++++|.-
T Consensus 387 ~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 387 TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCceEEeccccceeeeeec
Confidence 9999999999999999974
No 41
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=3.1e-32 Score=272.18 Aligned_cols=467 Identities=16% Similarity=0.217 Sum_probs=350.9
Q ss_pred cCCeEEEEEEeCC--------eEEEEEcCcceEEEecCCCCcceEEEEEecC--eEEEEE-c--Ce--EEEEeCCee--E
Q 002564 24 LGTENFVTVSVGK--------AFHIYNCAKLNLVLVGPQLPKKIRALASYRD--YTFAAY-G--NH--IAVVKRAHQ--V 86 (907)
Q Consensus 24 ~~~~~~~~~~~~~--------~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~--~~~~a~-g--~~--I~vw~~~~~--~ 86 (907)
|+...++++...+ .++|||..+++-+++.......|+|+||++- |.++.. + +. +.|||..+. .
T Consensus 114 Pdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~ 193 (626)
T KOG2106|consen 114 PDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKL 193 (626)
T ss_pred CCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhcc
Confidence 3444455455544 3899999999988888888999999999965 555443 2 22 888885543 3
Q ss_pred EEEcccccceEEEEe---eCCEEEEEecCCcEEEEecCCCCccccceeeEec-CCCcccEEEEcCCCCCCEEEEEecCCc
Q 002564 87 ATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKL-DDKFTPTCIMHPDTYLNKVIVGSQEGS 162 (907)
Q Consensus 87 ~~~~~h~~~V~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~l~~~s~dg~ 162 (907)
...+.-...|....| +.+.+++++ .|.+.+|+..++.+... ...++. ..+++.++.|.+++. +++|..+|.
T Consensus 194 ~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~-~~~fek~ekk~Vl~v~F~engd---viTgDS~G~ 268 (626)
T KOG2106|consen 194 GPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKR-QGIFEKREKKFVLCVTFLENGD---VITGDSGGN 268 (626)
T ss_pred CcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEE-eeccccccceEEEEEEEcCCCC---EEeecCCce
Confidence 334545556666665 567777777 89999999998876321 122222 236777888999984 999999999
Q ss_pred EEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEee-cCCCCEEEEEEecCCCCEEE
Q 002564 163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLLA 241 (907)
Q Consensus 163 i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~-~~~~~v~~l~fs~dg~~~l~ 241 (907)
|.||+..+.+..+....|.+.|.+++.-.+|.+|- |+.|..|..|| ..-+.++.... ...++|..++=. +. =+.
T Consensus 269 i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~--~~-di~ 343 (626)
T KOG2106|consen 269 ILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEG--KG-DIL 343 (626)
T ss_pred EEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecc-ccccccccccCchhcCCeeEEecC--CC-cEE
Confidence 99999988888888779999999999999997655 99999999999 43444443332 224678877643 22 266
Q ss_pred EEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEE
Q 002564 242 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR 321 (907)
Q Consensus 242 sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~ 321 (907)
+|...+.|.-=+++++-.+... +|......++.+|+.+.+++++.|+.+++|+ + . ++.-. ..-..++.|+.
T Consensus 344 vGTtrN~iL~Gt~~~~f~~~v~--gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~----k~~wt-~~~~d~~~~~~ 414 (626)
T KOG2106|consen 344 VGTTRNFILQGTLENGFTLTVQ--GHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-H----KLEWT-KIIEDPAECAD 414 (626)
T ss_pred EeeccceEEEeeecCCceEEEE--ecccceeeEEcCCChhheeeccCcceEEEcc-C-C----ceeEE-EEecCceeEee
Confidence 7777777777777766555444 6999999999999999999999999999997 1 1 22222 23457889999
Q ss_pred EecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCce
Q 002564 322 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 401 (907)
Q Consensus 322 ~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (907)
|+|.| .++.|...|...+.|.++...... +.
T Consensus 415 fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~--------------------------------------------~~---- 445 (626)
T KOG2106|consen 415 FHPSG-VVAVGTATGRWFVLDTETQDLVTI--------------------------------------------HT---- 445 (626)
T ss_pred ccCcc-eEEEeeccceEEEEecccceeEEE--------------------------------------------Ee----
Confidence 99999 999999999999999876322211 11
Q ss_pred EEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc-ceeeeccccccccCcCCcEEEE
Q 002564 402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS-RGSYLDMSERSNYAHNGEVVGV 480 (907)
Q Consensus 402 v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~h~~~v~~l 480 (907)
. ..+++++.++|+|.++++|+.|+.|++|.+..+.. ..... ..|..+|+.+
T Consensus 446 --------------------d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~-------k~~gs~ithL 497 (626)
T KOG2106|consen 446 --------------------D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG-------KCSGSPITHL 497 (626)
T ss_pred --------------------c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee-------eecCceeEEe
Confidence 1 37899999999999999999999999999865443 33333 3455899999
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCceeeeee-------------------cCcceeEEEEeeCCCEEEEEeCCCeEEE
Q 002564 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-------------------VGCSLVKIVYHRVNGLLATVADDLVIRL 541 (907)
Q Consensus 481 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------~~~~i~~~~~s~~~~~la~~~~dg~I~v 541 (907)
.|++|++++.+-+.|-.|-+|.-...+.+...+ ....|..++-+.+.+++|+|.+.|.|++
T Consensus 498 DwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~l 577 (626)
T KOG2106|consen 498 DWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHL 577 (626)
T ss_pred eecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEE
Confidence 999999999999999999999543332222111 1244556666777889999999999999
Q ss_pred EEcccc---eeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEc
Q 002564 542 FDVVAL---RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586 (907)
Q Consensus 542 ~d~~~~---~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~ 586 (907)
|...-- .....+.+|.+.|++++|..+...+++.+.|.+|..|++
T Consensus 578 f~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 578 FSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred EccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 987543 345677899999999999998888998889999999986
No 42
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.5e-35 Score=287.10 Aligned_cols=279 Identities=21% Similarity=0.395 Sum_probs=244.2
Q ss_pred CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC
Q 002564 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (907)
Q Consensus 224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 303 (907)
+.+|..+.|.|+|+ -|++|+..|.+.+|+..+......++ +|+.+|.++.|++++.++++|+.+|.|++|+.....
T Consensus 96 kc~V~~v~WtPeGR-RLltgs~SGEFtLWNg~~fnFEtilQ-aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-- 171 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGR-RLLTGSQSGEFTLWNGTSFNFETILQ-AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-- 171 (464)
T ss_pred ccceeeEEEcCCCc-eeEeecccccEEEecCceeeHHHHhh-hhcccceeEEEccCCCEEEEcCCCceEEecccchhh--
Confidence 46899999999999 88999999999999986665555555 999999999999999999999999999999766542
Q ss_pred cceeEeccC-CCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeec
Q 002564 304 PRLLRFRSG-HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382 (907)
Q Consensus 304 ~~~~~~~~~-h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (907)
++.... |...|++++|+|+...+++|+.||+|+|||....+....+
T Consensus 172 ---Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL------------------------------ 218 (464)
T KOG0284|consen 172 ---VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL------------------------------ 218 (464)
T ss_pred ---hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee------------------------------
Confidence 333334 5589999999999899999999999999997544322111
Q ss_pred ccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceee
Q 002564 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (907)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~ 462 (907)
T Consensus 219 -------------------------------------------------------------------------------- 218 (464)
T KOG0284|consen 219 -------------------------------------------------------------------------------- 218 (464)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEE
Q 002564 463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRL 541 (907)
Q Consensus 463 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v 541 (907)
.+|.-.|.+++|+|...+++++|.|..|++||.+++.++.++..+ ..|..+.|++++++|++++.|..+++
T Consensus 219 --------~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv 290 (464)
T KOG0284|consen 219 --------RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKV 290 (464)
T ss_pred --------ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEE
Confidence 389999999999999999999999999999999999999988655 88999999999999999999999999
Q ss_pred EEcccceeEEEeecCCCCeeeEEECCC-CcEEEEEeCCCcEEEEEcCCCceeeEeee--CCceEEEEECCCCceEEEEEe
Q 002564 542 FDVVALRMVRKFEGHTDRITDFCFSED-GKWLLSSGMDGSLRIWDVILARQIDAIHV--DVSITALSLSPNMDVLATAHV 618 (907)
Q Consensus 542 ~d~~~~~~~~~~~~h~~~I~~l~fspd-g~~l~s~s~Dg~I~vwd~~~~~~~~~~~~--~~~v~~l~~spdg~~lat~~~ 618 (907)
+|+++.+.++++++|...|++++|+|- ..+|.+|+.||.|..|.+...+++..+.. ...|++++|+|=|..|++++.
T Consensus 291 ~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn 370 (464)
T KOG0284|consen 291 FDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSN 370 (464)
T ss_pred EehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCC
Confidence 999999999999999999999999994 46788999999999999997777766653 345999999999999999999
Q ss_pred cCCeEEEeec
Q 002564 619 DQNGVYLWVN 628 (907)
Q Consensus 619 d~~~i~lW~~ 628 (907)
|. ++++|.-
T Consensus 371 d~-t~rfw~r 379 (464)
T KOG0284|consen 371 DR-TVRFWTR 379 (464)
T ss_pred Cc-ceeeecc
Confidence 98 7999983
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-32 Score=289.89 Aligned_cols=424 Identities=16% Similarity=0.261 Sum_probs=322.1
Q ss_pred EcccccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEE
Q 002564 89 WSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW 166 (907)
Q Consensus 89 ~~~h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iw 166 (907)
+...+.+|..++| ...|++++-..|.|++||..-+.+ +..+..|.+.+..+.|||.. ..+++|+.|-.|++|
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl----i~rFdeHdGpVRgv~FH~~q--plFVSGGDDykIkVW 78 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL----IDRFDEHDGPVRGVDFHPTQ--PLFVSGGDDYKIKVW 78 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhH----HhhhhccCCccceeeecCCC--CeEEecCCccEEEEE
Confidence 4455678888886 678999999999999999998888 88888999999999999999 789999999999999
Q ss_pred ecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCC
Q 002564 167 NISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS 246 (907)
Q Consensus 167 d~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~d 246 (907)
|.++.++++++.||-..|..+.|++.-.++++++.|.+|+|||..+++++..+.+| ...|.|..|+|... ++++++-|
T Consensus 79 nYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGH-nHYVMcAqFhptED-lIVSaSLD 156 (1202)
T KOG0292|consen 79 NYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGH-NHYVMCAQFHPTED-LIVSASLD 156 (1202)
T ss_pred ecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecC-ceEEEeeccCCccc-eEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999987 88999999999877 89999999
Q ss_pred CcEEEEECCCc----------------------------eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 002564 247 GVISIWNLEKR----------------------------RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298 (907)
Q Consensus 247 g~I~iwd~~~~----------------------------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~ 298 (907)
.+|+|||+..- ..++.+..+|+..|+.++|+|.-+++++|+.|+.|++|.++
T Consensus 157 QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmn 236 (1202)
T KOG0292|consen 157 QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN 236 (1202)
T ss_pred ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEec
Confidence 99999998521 11223335999999999999999999999999999999876
Q ss_pred CCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeE
Q 002564 299 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 378 (907)
Q Consensus 299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 378 (907)
... .-.+.+..||.+.|.++-|+|...++++.|.|++|++||+...+....+..
T Consensus 237 etK--aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr------------------------ 290 (1202)
T KOG0292|consen 237 ETK--AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR------------------------ 290 (1202)
T ss_pred ccc--ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec------------------------
Confidence 542 234566789999999999999989999999999999999987665554321
Q ss_pred eeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 002564 379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS 458 (907)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~ 458 (907)
.......++.+|..+.++.|..+| +.+|.++.-
T Consensus 291 --------------------------------------------endRFW~laahP~lNLfAAgHDsG-m~VFkleRE-- 323 (1202)
T KOG0292|consen 291 --------------------------------------------ENDRFWILAAHPELNLFAAGHDSG-MIVFKLERE-- 323 (1202)
T ss_pred --------------------------------------------cCCeEEEEEecCCcceeeeecCCc-eEEEEEccc--
Confidence 236788999999999999887666 445554421
Q ss_pred ceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeee--ecC----cceeEEEEeeCCCEEEE
Q 002564 459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW--EVG----CSLVKIVYHRVNGLLAT 532 (907)
Q Consensus 459 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~----~~i~~~~~s~~~~~la~ 532 (907)
.++ .+++. +.++.. - |..|+.+|+.+.+..... ... .+..++.|+|..+.+..
T Consensus 324 ----------------rpa--~~v~~-n~LfYv-k-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vli 382 (1202)
T KOG0292|consen 324 ----------------RPA--YAVNG-NGLFYV-K-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLI 382 (1202)
T ss_pred ----------------Cce--EEEcC-CEEEEE-c-cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEE
Confidence 122 22332 223333 2 789999999886543332 222 57788899886654443
Q ss_pred Ee--CCCeEEEEEcccc-------ee----------------EEE---------eecCCC----------CeeeEEECCC
Q 002564 533 VA--DDLVIRLFDVVAL-------RM----------------VRK---------FEGHTD----------RITDFCFSED 568 (907)
Q Consensus 533 ~~--~dg~I~v~d~~~~-------~~----------------~~~---------~~~h~~----------~I~~l~fspd 568 (907)
++ +++.-.++.+... +. ... +++-.+ .+..|-+..+
T Consensus 383 cs~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~ 462 (1202)
T KOG0292|consen 383 CSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGT 462 (1202)
T ss_pred EeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccC
Confidence 32 2333334433211 00 000 111111 2333444555
Q ss_pred CcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEE
Q 002564 569 GKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAH 617 (907)
Q Consensus 569 g~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~ 617 (907)
|.+|+. ....|.+||++..+.+..+.. +.|.-+.||+|+.++|--+
T Consensus 463 g~lll~--~~~~v~lfdvQq~~~~~si~~-s~vkyvvws~dm~~vAll~ 508 (1202)
T KOG0292|consen 463 GNLLLR--SPDSVTLFDVQQKKKVGSIKV-SKVKYVVWSNDMSRVALLS 508 (1202)
T ss_pred ccEEEE--cCCeEEEEEeecceEEEEEec-CceeEEEEcCccchhhhcc
Confidence 555543 244699999998888887764 4588899999888766444
No 44
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=254.37 Aligned_cols=294 Identities=18% Similarity=0.275 Sum_probs=245.0
Q ss_pred eeeEecCCCcccEEEEcCC-CCCCEEEEEecCCcEEEEecCC---CeEEEEE-cCCCCCEEEEEEcCCCCEEEEEecCCe
Q 002564 130 VGHVKLDDKFTPTCIMHPD-TYLNKVIVGSQEGSLQLWNIST---KKKLYEF-KGWGSSISSCVSSPALDVVAVGCSDGK 204 (907)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~-~~~~~l~~~s~dg~i~iwd~~~---~~~~~~~-~~h~~~I~~l~~sp~~~~la~g~~dg~ 204 (907)
+..++.+.+.+...++||. | ..|++|+.|+.|++|+... -.+...+ .+|+..|++++|+|.|++||+|+-|.+
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g--~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKG--VILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred EEeecCCCCcEEEEEeccCCc--eEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 5667778888999999998 6 6899999999999999874 3444444 479999999999999999999999999
Q ss_pred EEEEEccCC--ceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc---eeeeeeecccccCeEEEEEecC
Q 002564 205 IHVHNVRYD--EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR---RLQSVIREAHDNAIISLHFFAN 279 (907)
Q Consensus 205 I~iwd~~~~--~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~---~~~~~~~~~h~~~V~~l~~~~~ 279 (907)
+.||.-..+ +++.++.+| ...|.|++|+++|. +||+++.|..|.||.+..+ .+...++ .|...|..+.|+|.
T Consensus 85 ~~Iw~k~~~efecv~~lEGH-EnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~-~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGH-ENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHTQDVKHVIWHPT 161 (312)
T ss_pred EEEeecCCCceeEEeeeecc-ccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeec-cccccccEEEEcCC
Confidence 999986644 466777665 88999999999999 9999999999999998754 6777777 99999999999999
Q ss_pred CCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhH
Q 002564 280 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAK 359 (907)
Q Consensus 280 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 359 (907)
..+|++++.|++|++|+-.. +..+.+..++.+|...|.+++|++.|..|++++.|+++++|.....-
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~------------ 228 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL------------ 228 (312)
T ss_pred cceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc------------
Confidence 99999999999999998765 66789999999999999999999999999999999999999854210
Q ss_pred HHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEE
Q 002564 360 RARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA 439 (907)
Q Consensus 360 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 439 (907)
...|...+..++|. ...+
T Consensus 229 ------------------------------------------------------------~~~~sr~~Y~v~W~--~~~I 246 (312)
T KOG0645|consen 229 ------------------------------------------------------------SGMHSRALYDVPWD--NGVI 246 (312)
T ss_pred ------------------------------------------------------------chhcccceEeeeec--ccce
Confidence 01234677778887 5678
Q ss_pred EEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCC-CCEEEEEecCCeEEEEECC
Q 002564 440 VLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGYHGDIKVWDFK 504 (907)
Q Consensus 440 ~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~ 504 (907)
++++.|+.|++|.-..+..-..+... ......|...|++++|+|. ..+|++++.||.|++|.+.
T Consensus 247 aS~ggD~~i~lf~~s~~~d~p~~~l~-~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 247 ASGGGDDAIRLFKESDSPDEPSWNLL-AKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EeccCCCEEEEEEecCCCCCchHHHH-HhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 99999999999987654222222110 1112479999999999994 6889999999999999864
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=270.70 Aligned_cols=280 Identities=20% Similarity=0.396 Sum_probs=252.2
Q ss_pred ecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 002564 221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (907)
Q Consensus 221 ~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~ 300 (907)
.+|.+.|.|+++.|.++ ++++|+.|++|+|||+.+|++..++. +|-..|..+++++.-+++++++.|+.|+.||+...
T Consensus 148 ~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lkltlt-Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLTLT-GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN 225 (460)
T ss_pred hhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEeec-chhheeeeeeecccCceEEEecCCCeeEEEechhh
Confidence 44589999999999988 99999999999999999999999998 99999999999999999999999999999999876
Q ss_pred CCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEee
Q 002564 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380 (907)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 380 (907)
+.++.+.||-..|.+++.+|.-..|++|+.|.++|+||+++...+..
T Consensus 226 ----kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~----------------------------- 272 (460)
T KOG0285|consen 226 ----KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHV----------------------------- 272 (460)
T ss_pred ----hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEE-----------------------------
Confidence 67888899999999999999888999999999999999875432211
Q ss_pred ecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccce
Q 002564 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 460 (907)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~ 460 (907)
T Consensus 273 -------------------------------------------------------------------------------- 272 (460)
T KOG0285|consen 273 -------------------------------------------------------------------------------- 272 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeE
Q 002564 461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVI 539 (907)
Q Consensus 461 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I 539 (907)
+ .+|..+|..+.+.|.+..+++|+.|++|++||+..++...++.++ ..+.+++.+|....+|+++.| .|
T Consensus 273 -l--------~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-ni 342 (460)
T KOG0285|consen 273 -L--------SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NI 342 (460)
T ss_pred -e--------cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cc
Confidence 1 389999999999998889999999999999999999988887666 789999999999999999887 68
Q ss_pred EEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEe---------eeCCceEEEEECCCC
Q 002564 540 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI---------HVDVSITALSLSPNM 610 (907)
Q Consensus 540 ~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~---------~~~~~v~~l~~spdg 610 (907)
+-|++..+..+..+.+|+..|++++...|| ++++|+..|.+.+||.++|...+.. ..+..|.+.+|...|
T Consensus 343 k~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg 421 (460)
T KOG0285|consen 343 KQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG 421 (460)
T ss_pred eeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC
Confidence 999999999999999999999999999887 7888999999999999998655444 234459999999999
Q ss_pred ceEEEEEecCCeEEEee
Q 002564 611 DVLATAHVDQNGVYLWV 627 (907)
Q Consensus 611 ~~lat~~~d~~~i~lW~ 627 (907)
..|+|+..|. +|++|.
T Consensus 422 ~rlit~eadK-tIk~~k 437 (460)
T KOG0285|consen 422 SRLITGEADK-TIKMYK 437 (460)
T ss_pred ceEEeccCCc-ceEEEe
Confidence 9999999999 699997
No 46
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.9e-33 Score=260.95 Aligned_cols=282 Identities=18% Similarity=0.337 Sum_probs=246.6
Q ss_pred ecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc-eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 002564 221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT 299 (907)
Q Consensus 221 ~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~ 299 (907)
.+|++.|+.+.|+|+|. ++|+|+.|..|.+|+.... +-...++ +|.++|..+.|.+|++.++++|.|.+++.||..+
T Consensus 44 ~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~~~lk-gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENFWVLK-GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred CCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccceeeec-cccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 45689999999999999 9999999999999996544 5555566 9999999999999999999999999999999987
Q ss_pred CCCCcceeEeccCCCCCCeEEEEecCC-CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeE
Q 002564 300 TDGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 378 (907)
Q Consensus 300 ~~~~~~~~~~~~~h~~~v~~i~~~~~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 378 (907)
+ +..+...+|..-++++.-..-| .++.+++.||++++||+++....+.+.
T Consensus 122 G----~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~------------------------- 172 (338)
T KOG0265|consen 122 G----KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE------------------------- 172 (338)
T ss_pred c----eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-------------------------
Confidence 7 5677788999999999855544 456688899999999998765554431
Q ss_pred eeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 002564 379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS 458 (907)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~ 458 (907)
.+..++++.|...+..+++|.-|+.|++||+..+..
T Consensus 173 --------------------------------------------~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~ 208 (338)
T KOG0265|consen 173 --------------------------------------------NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG 208 (338)
T ss_pred --------------------------------------------cceeEEEEEecccccceeeccccCceeeeccccCcc
Confidence 237789999999999999999999999999998888
Q ss_pred ceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC----ceeeeeecC-----cceeEEEEeeCCCE
Q 002564 459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR----DLKSRWEVG-----CSLVKIVYHRVNGL 529 (907)
Q Consensus 459 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~-----~~i~~~~~s~~~~~ 529 (907)
...+. +|.+.|+++..+++|.++.+-+.|.++++||+... +++..+..+ .....++|+|++..
T Consensus 209 ~~~ls--------Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~ 280 (338)
T KOG0265|consen 209 LYTLS--------GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTK 280 (338)
T ss_pred eEEee--------cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCc
Confidence 88775 99999999999999999999999999999998743 345555443 45677899999999
Q ss_pred EEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEE
Q 002564 530 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (907)
Q Consensus 530 la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd 585 (907)
+.+|+.|..+++||..+...+..+.||.+.|+.++|+|...+|.+++.|.+|++=.
T Consensus 281 i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 281 ITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 99999999999999999999999999999999999999999999999999998743
No 47
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.4e-34 Score=276.07 Aligned_cols=291 Identities=21% Similarity=0.322 Sum_probs=252.3
Q ss_pred eeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEE
Q 002564 261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340 (907)
Q Consensus 261 ~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~i 340 (907)
..+. .|...|.-+.|+++|++||+++.|.+..+|.+..... ..+..++.+|..+|..+.|+||.+++++|+.|..+++
T Consensus 218 qil~-~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 218 QILQ-DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhHh-hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-eeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 3444 7999999999999999999999999999999876544 6778899999999999999999999999999999999
Q ss_pred EEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecC
Q 002564 341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420 (907)
Q Consensus 341 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~ 420 (907)
||+.++.....+..
T Consensus 296 wDv~tgd~~~~y~~------------------------------------------------------------------ 309 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPS------------------------------------------------------------------ 309 (519)
T ss_pred ccCCcchhhhhccc------------------------------------------------------------------
Confidence 99988765544432
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEE
Q 002564 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 500 (907)
Q Consensus 421 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 500 (907)
++...+.+++|.|||..+++|+.|+.+..|++.... ..... ......|.++++++||+++++.+.|..|++
T Consensus 310 -~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~-------gvr~~~v~dlait~Dgk~vl~v~~d~~i~l 380 (519)
T KOG0293|consen 310 -GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWE-------GVRDPKVHDLAITYDGKYVLLVTVDKKIRL 380 (519)
T ss_pred -CcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhccc-------ccccceeEEEEEcCCCcEEEEEecccceee
Confidence 123678999999999999999999999999997554 33332 123356999999999999999999999999
Q ss_pred EECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCC--eeeEEECC-CCcEEEEEeC
Q 002564 501 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDR--ITDFCFSE-DGKWLLSSGM 577 (907)
Q Consensus 501 wd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~--I~~l~fsp-dg~~l~s~s~ 577 (907)
++..+...+..+..+.+|++++.|.+++++.+.-.+..+++||++..+.++++.||... |-.-||-- +..++++||+
T Consensus 381 ~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE 460 (519)
T KOG0293|consen 381 YNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE 460 (519)
T ss_pred echhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCC
Confidence 99998888878888899999999999999999999999999999999999999999754 34445654 5589999999
Q ss_pred CCcEEEEEcCCCceeeEeeeCCc-eEEEEECCC-CceEEEEEecCCeEEEeecc
Q 002564 578 DGSLRIWDVILARQIDAIHVDVS-ITALSLSPN-MDVLATAHVDQNGVYLWVNR 629 (907)
Q Consensus 578 Dg~I~vwd~~~~~~~~~~~~~~~-v~~l~~spd-g~~lat~~~d~~~i~lW~~~ 629 (907)
|+.|+||+..+|+++..+.+|.. |.+++|+|. -.++|+|+.|| +|+||.+.
T Consensus 461 D~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDg-tIRIWg~~ 513 (519)
T KOG0293|consen 461 DSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDG-TIRIWGPS 513 (519)
T ss_pred CceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCC-eEEEecCC
Confidence 99999999999999999999987 999999995 46788888888 79999864
No 48
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-33 Score=274.29 Aligned_cols=291 Identities=16% Similarity=0.273 Sum_probs=231.5
Q ss_pred eEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCce---EEEEeecCCCCEEEEEEecCCCCEEEEEeCCCc
Q 002564 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE---LVTFTHSMRGAVTALAFSSDGQPLLASGASSGV 248 (907)
Q Consensus 172 ~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~---~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~ 248 (907)
+..+.+..|...|..+.||++|++||+++.|.+..+|.+..... ..++.+| ..+|..+.||||.+ +|++|+.+..
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh-~~~V~yi~wSPDdr-yLlaCg~~e~ 292 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGH-SQPVSYIMWSPDDR-YLLACGFDEV 292 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecc-cCceEEEEECCCCC-eEEecCchHh
Confidence 34566788999999999999999999999999999999887655 5555555 78999999999999 7778888888
Q ss_pred EEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCC-CCCCeEEEEecCCC
Q 002564 249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-SAPPLCIRFYANGR 327 (907)
Q Consensus 249 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~g~ 327 (907)
+.+||..+|.+...+..+|...+.+++|.|||..+++|+.|+++..|+++... +....+- ...|.+++..+||+
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-----~~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-----LGNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-----hhcccccccceeEEEEEcCCCc
Confidence 99999999999999987778999999999999999999999999999887542 2222221 13456666666666
Q ss_pred EEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEe
Q 002564 328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL 407 (907)
Q Consensus 328 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~ 407 (907)
++++.+.|..+++++..
T Consensus 368 ~vl~v~~d~~i~l~~~e--------------------------------------------------------------- 384 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNRE--------------------------------------------------------------- 384 (519)
T ss_pred EEEEEecccceeeechh---------------------------------------------------------------
Confidence 66666666666665543
Q ss_pred eeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCC
Q 002564 408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT 487 (907)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 487 (907)
....+... .-..+|+++.++.+++
T Consensus 385 -----------------------------------------------~~~dr~li---------se~~~its~~iS~d~k 408 (519)
T KOG0293|consen 385 -----------------------------------------------ARVDRGLI---------SEEQPITSFSISKDGK 408 (519)
T ss_pred -----------------------------------------------hhhhhccc---------cccCceeEEEEcCCCc
Confidence 22222211 3345688888888888
Q ss_pred EEEEEecCCeEEEEECCCCceeeeeecC---cceeEEEEee-CCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeE
Q 002564 488 LMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHR-VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF 563 (907)
Q Consensus 488 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~-~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l 563 (907)
++++.-.+..+++||+...++++.+.++ .-+..-||.- +..++|+|++|+.|+||+..+++++..+.||...|+++
T Consensus 409 ~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcV 488 (519)
T KOG0293|consen 409 LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCV 488 (519)
T ss_pred EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEE
Confidence 8888888888899998888777777655 2334445543 55899999999999999999999999999999999999
Q ss_pred EECCCC-cEEEEEeCCCcEEEEEcCC
Q 002564 564 CFSEDG-KWLLSSGMDGSLRIWDVIL 588 (907)
Q Consensus 564 ~fspdg-~~l~s~s~Dg~I~vwd~~~ 588 (907)
+|+|.. .++|+||.||+||||....
T Consensus 489 swNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 489 SWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999954 6899999999999998653
No 49
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.3e-33 Score=267.44 Aligned_cols=295 Identities=17% Similarity=0.256 Sum_probs=258.4
Q ss_pred EEEEcccccceEEEEee--CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcE
Q 002564 86 VATWSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL 163 (907)
Q Consensus 86 ~~~~~~h~~~V~~l~~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i 163 (907)
.+.+.||.+.|.+++++ ..|+++++.|++|+|||+.++++ ..++.+|-..+..+++++.. .++++++.|+.|
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L----kltltGhi~~vr~vavS~rH--pYlFs~gedk~V 217 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL----KLTLTGHIETVRGVAVSKRH--PYLFSAGEDKQV 217 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE----EEeecchhheeeeeeecccC--ceEEEecCCCee
Confidence 34489999999999975 78999999999999999999999 77888888888889999988 799999999999
Q ss_pred EEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEE
Q 002564 164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASG 243 (907)
Q Consensus 164 ~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg 243 (907)
+.||++..+.++.+.||-+.|.|++..|.-++|++|+.|..++|||+++...+..+.+| ..+|..+.+.|-.. .+++|
T Consensus 218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH-~~~V~~V~~~~~dp-qvit~ 295 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH-TNPVASVMCQPTDP-QVITG 295 (460)
T ss_pred EEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC-CCcceeEEeecCCC-ceEEe
Confidence 99999999999999999999999999999999999999999999999999999999887 89999999998766 69999
Q ss_pred eCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEe
Q 002564 244 ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323 (907)
Q Consensus 244 ~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 323 (907)
+.|++|++||+..|+...++. .|...|.+++.+|....+++++.|+ |+.|++..+ ..+..+.+|...+++++.+
T Consensus 296 S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g----~f~~nlsgh~~iintl~~n 369 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEG----EFLQNLSGHNAIINTLSVN 369 (460)
T ss_pred cCCceEEEeeeccCceeEeee-cccceeeEEecCCchhhhhccCCcc-ceeccCCcc----chhhccccccceeeeeeec
Confidence 999999999999999999998 8999999999999999999999874 899987655 4566688999999999999
Q ss_pred cCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEE
Q 002564 324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (907)
Q Consensus 324 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (907)
.|| ++++|+.+|.+..||.+++..-+......
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~v----------------------------------------------- 401 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIV----------------------------------------------- 401 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcCcccccccccc-----------------------------------------------
Confidence 887 89999999999999998765443321100
Q ss_pred EEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 002564 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS 455 (907)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~ 455 (907)
....-.....|.+.+|...|..|++|..|.+|.+|.-..
T Consensus 402 -------------qpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 402 -------------QPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred -------------cCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 000012236789999999999999999999999997543
No 50
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.8e-34 Score=278.90 Aligned_cols=283 Identities=19% Similarity=0.309 Sum_probs=248.3
Q ss_pred CcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEE
Q 002564 138 KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV 217 (907)
Q Consensus 138 ~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~ 217 (907)
..+..+.|.|+| +.|++|+..|.+.+||..+..--..+..|.++|+++.|++++.++++|+.+|.|++|+.. ...+.
T Consensus 97 c~V~~v~WtPeG--RRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk 173 (464)
T KOG0284|consen 97 CPVNVVRWTPEG--RRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVK 173 (464)
T ss_pred cceeeEEEcCCC--ceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhH
Confidence 345677899999 899999999999999975444444467899999999999999999999999999999976 45556
Q ss_pred EEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEc
Q 002564 218 TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297 (907)
Q Consensus 218 ~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~ 297 (907)
.+..+|...|++++|+|+.. .+++++.||+|+|||....+....+. +|.-.|.+++|+|...+++++|.|+.|++||-
T Consensus 174 ~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP~kgLiasgskDnlVKlWDp 251 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDP 251 (464)
T ss_pred HhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheec-cCCCCcceeccCCccceeEEccCCceeEeecC
Confidence 66677678999999999877 89999999999999999998888887 99999999999999999999999999999987
Q ss_pred cCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCcee
Q 002564 298 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 377 (907)
Q Consensus 298 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 377 (907)
.++ .++.++.+|...|..+.|.+++++|+++|.|..++++|+++.+....
T Consensus 252 rSg----~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~-------------------------- 301 (464)
T KOG0284|consen 252 RSG----SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT-------------------------- 301 (464)
T ss_pred CCc----chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHH--------------------------
Confidence 665 57888899999999999999999999999999999999975443332
Q ss_pred EeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC
Q 002564 378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSG 456 (907)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~ 456 (907)
..+|...+++++|+|.. +.+.+|+.||.|..|.+...
T Consensus 302 ------------------------------------------~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~ 339 (464)
T KOG0284|consen 302 ------------------------------------------YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE 339 (464)
T ss_pred ------------------------------------------hhcchhhheeeccccccccceeeccCCCceEEEecccc
Confidence 22566889999999975 67889999999999999866
Q ss_pred ccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564 457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (907)
Q Consensus 457 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 504 (907)
..+.... .+|...|.+++++|-|.+|++|+.|.++++|.-.
T Consensus 340 ~p~~~i~-------~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 340 EPLGEIP-------PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccccCCC-------cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 6666665 6999999999999999999999999999999754
No 51
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.6e-32 Score=256.07 Aligned_cols=299 Identities=18% Similarity=0.270 Sum_probs=255.8
Q ss_pred ccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEec-CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeE
Q 002564 127 LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI-STKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKI 205 (907)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~-~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I 205 (907)
..|+..+..|.+.+.++.|+|++ ..+++|+.|..|.+|++ ...+....+++|.+.|..+.|.+|++.|++++.|.+|
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~g--s~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v 114 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDG--SCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTV 114 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCC--CeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceE
Confidence 34566677889999999999999 89999999999999995 4566778899999999999999999999999999999
Q ss_pred EEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEE
Q 002564 206 HVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 285 (907)
Q Consensus 206 ~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 285 (907)
+.||.++|+.++.+..| ..-|.++.-+.-|..++.+|+.||++++||+++...++++. ....++++.|..++..+++
T Consensus 115 ~~wD~~tG~~~rk~k~h-~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~qv~s 191 (338)
T KOG0265|consen 115 RGWDAETGKRIRKHKGH-TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSDQVIS 191 (338)
T ss_pred EEEecccceeeehhccc-cceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEecccccceee
Confidence 99999999999999887 77889998766777788899999999999999999988885 5678999999999999999
Q ss_pred EcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhcc
Q 002564 286 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK 365 (907)
Q Consensus 286 ~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 365 (907)
|+-|+.|++||+... ..+..+.||.++|+.+..+++|.++++-+.|.++++||++.-.....
T Consensus 192 ggIdn~ikvWd~r~~----d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R-------------- 253 (338)
T KOG0265|consen 192 GGIDNDIKVWDLRKN----DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR-------------- 253 (338)
T ss_pred ccccCceeeeccccC----cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc--------------
Confidence 999999999998766 35677889999999999999999999999999999999864322111
Q ss_pred chhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCC
Q 002564 366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445 (907)
Q Consensus 366 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d 445 (907)
.+.++--... ......-.++|+|+++++..|+.|
T Consensus 254 -----------------------------------~v~if~g~~h-----------nfeknlL~cswsp~~~~i~ags~d 287 (338)
T KOG0265|consen 254 -----------------------------------CVKIFQGHIH-----------NFEKNLLKCSWSPNGTKITAGSAD 287 (338)
T ss_pred -----------------------------------eEEEeecchh-----------hhhhhcceeeccCCCCcccccccc
Confidence 0111110000 011345567999999999999999
Q ss_pred CcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (907)
Q Consensus 446 g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 502 (907)
..+++||..+...+..++ +|.+.|.+++|+|...+|.+++.|.+|.+=.
T Consensus 288 r~vyvwd~~~r~~lyklp--------Gh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 288 RFVYVWDTTSRRILYKLP--------GHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ceEEEeecccccEEEEcC--------CcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 999999999888877775 9999999999999999999999999987643
No 52
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1e-33 Score=282.32 Aligned_cols=288 Identities=20% Similarity=0.332 Sum_probs=254.8
Q ss_pred eeeeeeecccccCeEEEEEec-CCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCC
Q 002564 258 RLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 336 (907)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg 336 (907)
+.+..+. +|...|+++.|.| .+.+|++++.|+.|++|++-.. .++++++.+|..+|..++|+++|..+++++.|+
T Consensus 205 k~~~~~~-gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~---~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 205 KLSHNLS-GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD---RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred hheeecc-CCccccchhhhccceeeEEEecCCCceEEEEEEecC---cceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence 4556666 9999999999999 8889999999999999998652 378999999999999999999999999999999
Q ss_pred CEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceeccee
Q 002564 337 AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416 (907)
Q Consensus 337 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~ 416 (907)
.+++||++++++...+..
T Consensus 281 ~lKlwDtETG~~~~~f~~-------------------------------------------------------------- 298 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHL-------------------------------------------------------------- 298 (503)
T ss_pred eeeeeccccceEEEEEec--------------------------------------------------------------
Confidence 999999999988766543
Q ss_pred eecCCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecC
Q 002564 417 LRPCPENPTAVKACTISACG-NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH 495 (907)
Q Consensus 417 ~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 495 (907)
...++|+.+.|++ +.+++|..|+.|+.||+++++.+..+. .|-+.|..+.|-++|+.+++++.|
T Consensus 299 -------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd--------~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 299 -------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD--------RHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred -------CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH--------hhhhheeeeEEccCCceEeeeccC
Confidence 2568899999999 899999999999999999999999986 899999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeecC--cceeEEEEeeCCCEEEEEeCCCeEEEEEcccc---eeEEEeecCC--CCeeeEEECCC
Q 002564 496 GDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL---RMVRKFEGHT--DRITDFCFSED 568 (907)
Q Consensus 496 g~i~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~---~~~~~~~~h~--~~I~~l~fspd 568 (907)
+.++||+...+-.+..+... ....++..+|+++++++-+.|+.|.+|.+... ...+.|.||. +--..+.||||
T Consensus 364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 99999999988776655433 56778999999999999999999999986543 2345688886 44567899999
Q ss_pred CcEEEEEeCCCcEEEEEcCCCceeeEeeeC-CceEEEEECCC-CceEEEEEecCCeEEEee
Q 002564 569 GKWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPN-MDVLATAHVDQNGVYLWV 627 (907)
Q Consensus 569 g~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~-~~v~~l~~spd-g~~lat~~~d~~~i~lW~ 627 (907)
|++|++|+.||.+.+||..+-+++..+..| .+|..+.|+|. -..+||++.|| .|++|+
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G-~Ikiwd 503 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDG-LIKIWD 503 (503)
T ss_pred CCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCc-eeEecC
Confidence 999999999999999999999999999888 56999999995 46799999999 599996
No 53
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.8e-33 Score=255.11 Aligned_cols=290 Identities=19% Similarity=0.329 Sum_probs=258.5
Q ss_pred EEEcCCCCCEEEEEEcC---CCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEE
Q 002564 175 YEFKGWGSSISSCVSSP---ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251 (907)
Q Consensus 175 ~~~~~h~~~I~~l~~sp---~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~i 251 (907)
.+..+|..+|..++||| +|-+|++++.||.-.+-+-++|.-+.+|.+| ++.|.+.+...+.. ..|+++.|-+-++
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfegh-kgavw~~~l~~na~-~aasaaadftakv 85 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGH-KGAVWSATLNKNAT-RAASAAADFTAKV 85 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeecc-CcceeeeecCchhh-hhhhhcccchhhh
Confidence 45679999999999985 7889999999999999999999999999987 89999999998877 7889999999999
Q ss_pred EECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEE
Q 002564 252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331 (907)
Q Consensus 252 wd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s 331 (907)
||.-+|..+..+. |..-|.+++|+.|.++|++|+.+..+++||++..+..+. ...+|.+.|..+.|....+.+++
T Consensus 86 w~a~tgdelhsf~--hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~---E~~ghtg~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 86 WDAVTGDELHSFE--HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK---EISGHTGGIRTVLWCHEDKCILS 160 (334)
T ss_pred hhhhhhhhhhhhh--hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch---hhcCCCCcceeEEEeccCceEEe
Confidence 9999999999996 888999999999999999999999999999988775544 45699999999999998899999
Q ss_pred EeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeece
Q 002564 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411 (907)
Q Consensus 332 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~ 411 (907)
++.|++||+||.+++.....+
T Consensus 161 Sadd~tVRLWD~rTgt~v~sL----------------------------------------------------------- 181 (334)
T KOG0278|consen 161 SADDKTVRLWDHRTGTEVQSL----------------------------------------------------------- 181 (334)
T ss_pred eccCCceEEEEeccCcEEEEE-----------------------------------------------------------
Confidence 999999999998776544432
Q ss_pred ecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEE
Q 002564 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS 491 (907)
Q Consensus 412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 491 (907)
.-..+|+++.++++|++|.+
T Consensus 182 ------------------------------------------------------------~~~s~VtSlEvs~dG~ilTi 201 (334)
T KOG0278|consen 182 ------------------------------------------------------------EFNSPVTSLEVSQDGRILTI 201 (334)
T ss_pred ------------------------------------------------------------ecCCCCcceeeccCCCEEEE
Confidence 23345778888888876655
Q ss_pred EecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEe-ecCCCCeeeEEECCCCc
Q 002564 492 AGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDGK 570 (907)
Q Consensus 492 ~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~-~~h~~~I~~l~fspdg~ 570 (907)
+. .+.|++||..+..+++.++.+..|.+..++|+...+++|+.|+.++.||..++..+..+ ++|.++|.++.|+|||.
T Consensus 202 a~-gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE 280 (334)
T KOG0278|consen 202 AY-GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE 280 (334)
T ss_pred ec-CceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc
Confidence 44 57899999999999999999999999999999999999999999999999999998886 89999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCce
Q 002564 571 WLLSSGMDGSLRIWDVILARQ 591 (907)
Q Consensus 571 ~l~s~s~Dg~I~vwd~~~~~~ 591 (907)
..++||.||+||+|....++.
T Consensus 281 ~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 281 LYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred eeeccCCCceEEEEEecCCCc
Confidence 999999999999999876543
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.5e-31 Score=280.45 Aligned_cols=286 Identities=29% Similarity=0.479 Sum_probs=246.8
Q ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 002564 175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL 254 (907)
Q Consensus 175 ~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~ 254 (907)
.++++|..+|++++|+|+++++++++.+|.|.+|++.+++....+..+ ...+..+.|+++++ .+++++.+|.|.+||+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH-TGPVRDVAASADGT-YLASGSSDKTIRLWDL 80 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC-CcceeEEEECCCCC-EEEEEcCCCeEEEEEc
Confidence 457789999999999999999999999999999999988877777655 67889999999997 8999999999999999
Q ss_pred CCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeC
Q 002564 255 EKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ 334 (907)
Q Consensus 255 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~ 334 (907)
.+++....+. .|...+.++.|++++.++++++.|+.+++|++... .....+..|...+.++.|+|++.++++++.
T Consensus 81 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 155 (289)
T cd00200 81 ETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG----KCLTTLRGHTDWVNSVAFSPDGTFVASSSQ 155 (289)
T ss_pred CcccceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc----EEEEEeccCCCcEEEEEEcCcCCEEEEEcC
Confidence 9988888887 89999999999999888988888999999998743 345555578888888888888777777777
Q ss_pred CCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecc
Q 002564 335 DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 414 (907)
Q Consensus 335 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~ 414 (907)
|+.+++||+...
T Consensus 156 ~~~i~i~d~~~~-------------------------------------------------------------------- 167 (289)
T cd00200 156 DGTIKLWDLRTG-------------------------------------------------------------------- 167 (289)
T ss_pred CCcEEEEEcccc--------------------------------------------------------------------
Confidence 788888776422
Q ss_pred eeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEec
Q 002564 415 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY 494 (907)
Q Consensus 415 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 494 (907)
.....+ ..|...+.++.++|+++.+++++.
T Consensus 168 ------------------------------------------~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 168 ------------------------------------------KCVATL--------TGHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred ------------------------------------------ccceeE--------ecCccccceEEECCCcCEEEEecC
Confidence 112222 156678899999999988999998
Q ss_pred CCeEEEEECCCCceeeee-ecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEE
Q 002564 495 HGDIKVWDFKGRDLKSRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLL 573 (907)
Q Consensus 495 dg~i~iwd~~~~~~~~~~-~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~ 573 (907)
||.+++||+..++....+ .+...+.++.|+|++.++++++.++.|++||+.+++....+.+|...|.+++|+|++++|+
T Consensus 198 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 277 (289)
T cd00200 198 DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLA 277 (289)
T ss_pred CCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEE
Confidence 999999999988888888 4557999999999988888888899999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEE
Q 002564 574 SSGMDGSLRIWD 585 (907)
Q Consensus 574 s~s~Dg~I~vwd 585 (907)
+++.|+.|++|+
T Consensus 278 ~~~~d~~i~iw~ 289 (289)
T cd00200 278 SGSADGTIRIWD 289 (289)
T ss_pred EecCCCeEEecC
Confidence 999999999996
No 55
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6.7e-33 Score=276.53 Aligned_cols=290 Identities=18% Similarity=0.290 Sum_probs=243.3
Q ss_pred CeEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEEccC-CceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCc
Q 002564 171 KKKLYEFKGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV 248 (907)
Q Consensus 171 ~~~~~~~~~h~~~I~~l~~sp-~~~~la~g~~dg~I~iwd~~~-~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~ 248 (907)
.+.++++.+|...|+++.|.| .+.+|++++.|+.|+||++.. ++++++|.+| ..+|.+++|+++|. -+.+++.|+.
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH-~k~Vrd~~~s~~g~-~fLS~sfD~~ 281 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH-RKPVRDASFNNCGT-SFLSASFDRF 281 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcc-hhhhhhhhccccCC-eeeeeeccee
Confidence 456788999999999999999 899999999999999999987 7788888876 88999999999999 7889999999
Q ss_pred EEEEECCCceeeeeeecccccCeEEEEEecCC-CEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCC
Q 002564 249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR 327 (907)
Q Consensus 249 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~ 327 (907)
|++||+++|+++..+. ....++++.|.|++ +.+++|+.|+.|+.||++.+ .+++....|-+.|..+.|.++|+
T Consensus 282 lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~----kvvqeYd~hLg~i~~i~F~~~g~ 355 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG----KVVQEYDRHLGAILDITFVDEGR 355 (503)
T ss_pred eeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch----HHHHHHHhhhhheeeeEEccCCc
Confidence 9999999999999987 55678999999998 78999999999999999876 57788889999999999999999
Q ss_pred EEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEe
Q 002564 328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL 407 (907)
Q Consensus 328 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~ 407 (907)
++++++.|+++++|+...+-......
T Consensus 356 rFissSDdks~riWe~~~~v~ik~i~------------------------------------------------------ 381 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENRIPVPIKNIA------------------------------------------------------ 381 (503)
T ss_pred eEeeeccCccEEEEEcCCCccchhhc------------------------------------------------------
Confidence 99999999999999976443221110
Q ss_pred eeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCC
Q 002564 408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT 487 (907)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 487 (907)
..+.....++..+|+++
T Consensus 382 ---------------------------------------------------------------~~~~hsmP~~~~~P~~~ 398 (503)
T KOG0282|consen 382 ---------------------------------------------------------------DPEMHTMPCLTLHPNGK 398 (503)
T ss_pred ---------------------------------------------------------------chhhccCcceecCCCCC
Confidence 01222344566667777
Q ss_pred EEEEEecCCeEEEEECCCC---ceeeeeecC---cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCee
Q 002564 488 LMISAGYHGDIKVWDFKGR---DLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT 561 (907)
Q Consensus 488 ~l~s~~~dg~i~iwd~~~~---~~~~~~~~~---~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~ 561 (907)
+++.-+.|+.|.++.+... .....++.+ +--..+.|||||++|++|+.||.+.+||.++-+++..+++|.+++.
T Consensus 399 ~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci 478 (503)
T KOG0282|consen 399 WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCI 478 (503)
T ss_pred eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceE
Confidence 7777777777777764432 112223332 5567889999999999999999999999999999999999999999
Q ss_pred eEEECCCC-cEEEEEeCCCcEEEEE
Q 002564 562 DFCFSEDG-KWLLSSGMDGSLRIWD 585 (907)
Q Consensus 562 ~l~fspdg-~~l~s~s~Dg~I~vwd 585 (907)
.+.|+|.. ..+|+++.||.|++||
T Consensus 479 ~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 479 GVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEecCCCcceeEecccCceeEecC
Confidence 99999954 5799999999999996
No 56
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.4e-28 Score=253.90 Aligned_cols=499 Identities=16% Similarity=0.236 Sum_probs=353.2
Q ss_pred cccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCC-CcccEEEEcCCCCCCEEEEEecCCcEEEEec
Q 002564 92 HSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDD-KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI 168 (907)
Q Consensus 92 h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~ 168 (907)
-..+|.++++ ..+.||.+-.||.|.+|++...-.. ...+.++. ..+-..+|.+. ..|.+.+.+|.|.-||+
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~---~~vi~g~~drsIE~L~W~e~---~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL---EPVIHGPEDRSIESLAWAEG---GRLFSSGLSGSITEWDL 97 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCcee---eEEEecCCCCceeeEEEccC---CeEEeecCCceEEEEec
Confidence 3467999998 4678999999999999999885442 34444443 45566677755 47999999999999999
Q ss_pred CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEee-cCCCCEEEEEEecCCCCEEEEEeCCC
Q 002564 169 STKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLLASGASSG 247 (907)
Q Consensus 169 ~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~-~~~~~v~~l~fs~dg~~~l~sg~~dg 247 (907)
.+++..+.+....+.|++++.+|.++.+++|+.||.+..++...++....... ..++.|.+++|.|++. .+++|+.||
T Consensus 98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~-~i~~Gs~Dg 176 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT-KIAGGSIDG 176 (691)
T ss_pred ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc-EEEecccCc
Confidence 99999999999999999999999999999999999888888887776554432 2358999999999998 799999999
Q ss_pred cEEEEECCCceeeeeee-------cccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEE
Q 002564 248 VISIWNLEKRRLQSVIR-------EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320 (907)
Q Consensus 248 ~I~iwd~~~~~~~~~~~-------~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i 320 (907)
.|++||..++..+.... .....-|+++.|..++ .+++|..-|+|++||...+ .++.....|.+.|.++
T Consensus 177 ~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g----TLiqS~~~h~adVl~L 251 (691)
T KOG2048|consen 177 VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG----TLIQSHSCHDADVLAL 251 (691)
T ss_pred eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc----chhhhhhhhhcceeEE
Confidence 99999999997766322 1233458889988666 7999999999999987765 5677778899999999
Q ss_pred EEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCc
Q 002564 321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA 400 (907)
Q Consensus 321 ~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 400 (907)
+..+++.+++++|.|+.+..+...+........ .....+...+.+++... +.+..+..+.
T Consensus 252 av~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~-------------~~r~~h~hdvrs~av~~-------~~l~sgG~d~ 311 (691)
T KOG2048|consen 252 AVADNEDRVFSAGVDPKIIQYSLTTNKSEWVIN-------------SRRDLHAHDVRSMAVIE-------NALISGGRDF 311 (691)
T ss_pred EEcCCCCeEEEccCCCceEEEEecCCccceeee-------------ccccCCcccceeeeeec-------ceEEecceee
Confidence 999999999999999999988876654321110 01111111222222211 1233333333
Q ss_pred eEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccc-cccCcCCcEEE
Q 002564 401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER-SNYAHNGEVVG 479 (907)
Q Consensus 401 ~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~h~~~v~~ 479 (907)
.+.+-.........+.... ..+-.+.....-.+++++--....+.+|.+.+....+.+...... ........|.+
T Consensus 312 ~l~i~~s~~~~~~~h~~~~----~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~ 387 (691)
T KOG2048|consen 312 TLAICSSREFKNMDHRQKN----LFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISC 387 (691)
T ss_pred EEEEccccccCchhhhccc----cccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceee
Confidence 3433333332222222111 112222223333456666666677888888776333222110000 01234467999
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC------cceeEEEEeeCCCEEEEEe-CCCeEEEEEcccce--eE
Q 002564 480 VACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG------CSLVKIVYHRVNGLLATVA-DDLVIRLFDVVALR--MV 550 (907)
Q Consensus 480 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~i~~~~~s~~~~~la~~~-~dg~I~v~d~~~~~--~~ 550 (907)
.+.+|+|++++.+.- ..+++|.++....+...... -+...+.|+-|++.++.++ ....+.+++.++.. .+
T Consensus 388 ~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel 466 (691)
T KOG2048|consen 388 AAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKEL 466 (691)
T ss_pred eccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhh
Confidence 999999999987764 56788887753333332222 4677888998888877777 77788888877653 22
Q ss_pred EEee--cCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEe-eeCCceEEEEECC-CCceEEEEEecCCeEEEe
Q 002564 551 RKFE--GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI-HVDVSITALSLSP-NMDVLATAHVDQNGVYLW 626 (907)
Q Consensus 551 ~~~~--~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~-~~~~~v~~l~~sp-dg~~lat~~~d~~~i~lW 626 (907)
..+. +-...|+.+..||||+|||+.+.+|.|.+|++.+++.-... +....++.++|+| +...|+.++.++ .++=+
T Consensus 467 ~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~n-Qv~ef 545 (691)
T KOG2048|consen 467 KSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNN-QVFEF 545 (691)
T ss_pred hccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCC-eEEEE
Confidence 2222 34577999999999999999999999999999988765444 5567799999995 667888888888 69888
Q ss_pred ec
Q 002564 627 VN 628 (907)
Q Consensus 627 ~~ 628 (907)
|+
T Consensus 546 di 547 (691)
T KOG2048|consen 546 DI 547 (691)
T ss_pred ec
Confidence 87
No 57
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.5e-30 Score=274.49 Aligned_cols=285 Identities=23% Similarity=0.416 Sum_probs=250.9
Q ss_pred eeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEE
Q 002564 261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340 (907)
Q Consensus 261 ~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~i 340 (907)
..+. +|.++|.+++|+|+++++++++.||.+++|+++... .......|...+..+.|+|+++.+++++.||.+++
T Consensus 3 ~~~~-~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 3 RTLK-GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE----LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRL 77 (289)
T ss_pred hHhc-ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC----cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence 3455 899999999999999999999999999999987653 45566789999999999999999999999999999
Q ss_pred EEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecC
Q 002564 341 FSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPC 420 (907)
Q Consensus 341 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~ 420 (907)
|++...+....+.
T Consensus 78 ~~~~~~~~~~~~~------------------------------------------------------------------- 90 (289)
T cd00200 78 WDLETGECVRTLT------------------------------------------------------------------- 90 (289)
T ss_pred EEcCcccceEEEe-------------------------------------------------------------------
Confidence 9987543322211
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEE
Q 002564 421 PENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 500 (907)
Q Consensus 421 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 500 (907)
.+...+.++.++++++++++++.+|.+.+|++.++.....+. .|...+.+++++|++.++++++.||.|++
T Consensus 91 -~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 91 -GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR--------GHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred -ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec--------cCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 233679999999999999998889999999999887777664 78899999999999999988888999999
Q ss_pred EECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCC
Q 002564 501 WDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 579 (907)
Q Consensus 501 wd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg 579 (907)
||+.+++....+..+ ..+.++.|+|+++.+++++.++.|++||+.+++.+..+.+|...|.+++|+|++.++++++.||
T Consensus 162 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred EEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 999988888877665 5899999999999999999999999999999999999988999999999999999999988899
Q ss_pred cEEEEEcCCCceeeEeeeCC-ceEEEEECCCCceEEEEEecCCeEEEee
Q 002564 580 SLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWV 627 (907)
Q Consensus 580 ~I~vwd~~~~~~~~~~~~~~-~v~~l~~spdg~~lat~~~d~~~i~lW~ 627 (907)
.|++||+.+++.+..+..+. .+.+++|+|++.+|++++.|+ .|++|+
T Consensus 242 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG-TIRIWD 289 (289)
T ss_pred cEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCC-eEEecC
Confidence 99999999999888887654 599999999999999999999 599996
No 58
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-31 Score=238.85 Aligned_cols=283 Identities=20% Similarity=0.381 Sum_probs=243.0
Q ss_pred EEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEE
Q 002564 217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 296 (907)
Q Consensus 217 ~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~ 296 (907)
..+..+ +++|.++.|+-||+ +.++++.|.+|++|+...+.+++++. +|...|..++.+.|...+++|+.|..+.+||
T Consensus 11 ~~l~~~-qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~liktYs-ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 11 SILDCA-QGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKTYS-GHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred eeeccc-ccceEEEEEccCCC-EEEEcCCCceEEeecccccceeeeec-CCCceeeeccccccccccccCCCCceEEEEE
Confidence 334444 78999999999999 88889999999999999999999999 9999999999999999999999999999999
Q ss_pred ccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCce
Q 002564 297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 376 (907)
Q Consensus 297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 376 (907)
+.++ +..+.+.+|.+.|+.++|+.+...+++|+-|.++++||-++....
T Consensus 88 V~TG----kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e--------------------------- 136 (307)
T KOG0316|consen 88 VNTG----KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE--------------------------- 136 (307)
T ss_pred cccC----eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC---------------------------
Confidence 9877 678889999999999999999999999999999999997643211
Q ss_pred eEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 002564 377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG 456 (907)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~ 456 (907)
+
T Consensus 137 -------------------------------------------------P------------------------------ 137 (307)
T KOG0316|consen 137 -------------------------------------------------P------------------------------ 137 (307)
T ss_pred -------------------------------------------------c------------------------------
Confidence 0
Q ss_pred ccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCC
Q 002564 457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD 536 (907)
Q Consensus 457 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d 536 (907)
++.+ ......|.++.+. +..+++|+.||+++.||+..|++..-+ ...+|++++|+++++...+++-|
T Consensus 138 --iQil--------dea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l~ 204 (307)
T KOG0316|consen 138 --IQIL--------DEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSLD 204 (307)
T ss_pred --cchh--------hhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEeecc
Confidence 1111 1334556666665 457889999999999999988765443 34799999999999999999999
Q ss_pred CeEEEEEcccceeEEEeecCCCCe--eeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCc--eEEEEECCCCce
Q 002564 537 LVIRLFDVVALRMVRKFEGHTDRI--TDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDV 612 (907)
Q Consensus 537 g~I~v~d~~~~~~~~~~~~h~~~I--~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~--v~~l~~spdg~~ 612 (907)
+++++.|-.+|+++..+.||.+.- .+.+++.....+++||+||.|.+||+..+..+..+..++. +++++++|.-..
T Consensus 205 stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~ 284 (307)
T KOG0316|consen 205 STLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDD 284 (307)
T ss_pred ceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccc
Confidence 999999999999999999998653 4567888888999999999999999999999999988775 799999999888
Q ss_pred EEEEEecCCeEEEee
Q 002564 613 LATAHVDQNGVYLWV 627 (907)
Q Consensus 613 lat~~~d~~~i~lW~ 627 (907)
+.++...+ +..|.
T Consensus 285 f~~A~~~~--~~~~~ 297 (307)
T KOG0316|consen 285 FITATGHG--DLFWY 297 (307)
T ss_pred eeEecCCc--eecee
Confidence 88887654 77886
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=7.6e-31 Score=253.81 Aligned_cols=305 Identities=21% Similarity=0.359 Sum_probs=245.0
Q ss_pred CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCC---EEEEEcCCCcEEEEEccCC
Q 002564 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP---VLMSASADNSIKMWIFDTT 300 (907)
Q Consensus 224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~---~l~s~~~d~~i~vw~~~~~ 300 (907)
...|.++... ++ .+++|+.||.+++||. .|+...++. +|.++|.+++|..... .+++++.|.++++|.++.+
T Consensus 105 dDWVSsv~~~--~~-~IltgsYDg~~riWd~-~Gk~~~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 105 DDWVSSVKGA--SK-WILTGSYDGTSRIWDL-KGKSIKTIV-GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred hhhhhhhccc--Cc-eEEEeecCCeeEEEec-CCceEEEEe-cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 5788888877 44 8999999999999995 688888888 9999999988865444 5999999999999999888
Q ss_pred CCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEee
Q 002564 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380 (907)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 380 (907)
......+....||...|.+++..++|..+++|+.|.+|.+|+..+... .++......++.+....
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~-~~~E~~s~~rrk~~~~~-------------- 244 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEE-DELESSSNRRRKKQKRE-------------- 244 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcc-ccccccchhhhhhhhhh--------------
Confidence 766666666679999999999999999999999999999999332211 11110000000000000
Q ss_pred ecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccce
Q 002564 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 460 (907)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~ 460 (907)
.. ...+.++.
T Consensus 245 --------------------------------------~~--------------------------------~~~r~P~v 254 (423)
T KOG0313|consen 245 --------------------------------------KE--------------------------------GGTRTPLV 254 (423)
T ss_pred --------------------------------------hc--------------------------------ccccCceE
Confidence 00 00111122
Q ss_pred eeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEE
Q 002564 461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIR 540 (907)
Q Consensus 461 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~ 540 (907)
.+ .+|..+|.++.|++ ...+++++.|.+|+.||+.++....++.....+.++.++|..++||+|+.|..++
T Consensus 255 tl--------~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 255 TL--------EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIR 325 (423)
T ss_pred Ee--------cccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCcee
Confidence 22 49999999999998 6789999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccc---eeEEEeecCCCCeeeEEECCCCc-EEEEEeCCCcEEEEEcCCCc-eeeEeeeCCc-eEEEEECCCCceEE
Q 002564 541 LFDVVAL---RMVRKFEGHTDRITDFCFSEDGK-WLLSSGMDGSLRIWDVILAR-QIDAIHVDVS-ITALSLSPNMDVLA 614 (907)
Q Consensus 541 v~d~~~~---~~~~~~~~h~~~I~~l~fspdg~-~l~s~s~Dg~I~vwd~~~~~-~~~~~~~~~~-v~~l~~spdg~~la 614 (907)
+||.+++ -...+|.||.+.|.++.|+|... .|++++.|+++++||+++.+ ++..+..|.. |.++.|+ ++.+++
T Consensus 326 l~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~Iv 404 (423)
T KOG0313|consen 326 LWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIV 404 (423)
T ss_pred ecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEE
Confidence 9999876 34667999999999999999765 57899999999999999877 7877776654 9999997 567899
Q ss_pred EEEecCCeEEEeecc
Q 002564 615 TAHVDQNGVYLWVNR 629 (907)
Q Consensus 615 t~~~d~~~i~lW~~~ 629 (907)
+|+.|. .|+++.-.
T Consensus 405 SGGaD~-~l~i~~~~ 418 (423)
T KOG0313|consen 405 SGGADN-KLRIFKGS 418 (423)
T ss_pred eccCcc-eEEEeccc
Confidence 999999 59998743
No 60
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8e-31 Score=289.17 Aligned_cols=290 Identities=23% Similarity=0.401 Sum_probs=253.5
Q ss_pred EEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCce--eeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEE
Q 002564 217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM 294 (907)
Q Consensus 217 ~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~v 294 (907)
..+..++...|.++.|+++|+ .+++++.++.+++|+..+.+ ....+. +|...|.+++|+|++.++++++.|++|++
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeecccccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcccc-ccccceeeeEECCCCcEEEEecCCceEEE
Confidence 344444467899999999999 79999999999999998777 666665 89999999999999999999999999999
Q ss_pred EEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccC
Q 002564 295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLK 374 (907)
Q Consensus 295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (907)
||+.. ....++.+.+|...|++++|+|+|+.+++|+.|++|++||+.+++....+.
T Consensus 230 wd~~~---~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~--------------------- 285 (456)
T KOG0266|consen 230 WDLKD---DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK--------------------- 285 (456)
T ss_pred eeccC---CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee---------------------
Confidence 99822 226788889999999999999999999999999999999998765554432
Q ss_pred ceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 002564 375 PVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ 454 (907)
Q Consensus 375 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~ 454 (907)
+|...|++++|+++|+++++++.||.|++||+.
T Consensus 286 -----------------------------------------------~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~ 318 (456)
T KOG0266|consen 286 -----------------------------------------------GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE 318 (456)
T ss_pred -----------------------------------------------ccCCceEEEEECCCCCEEEEcCCCccEEEEECC
Confidence 466899999999999999999999999999999
Q ss_pred CCcc--ceeeeccccccccCcCC--cEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-c---ceeEEEEeeC
Q 002564 455 SGIS--RGSYLDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-C---SLVKIVYHRV 526 (907)
Q Consensus 455 ~~~~--~~~~~~~~~~~~~~h~~--~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~---~i~~~~~s~~ 526 (907)
++.. ...+. .+.. .++.+.|+|+++++++++.|+.+++||+..+.....+..+ . .+.+...++.
T Consensus 319 ~~~~~~~~~~~--------~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (456)
T KOG0266|consen 319 TGSKLCLKLLS--------GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG 390 (456)
T ss_pred CCceeeeeccc--------CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCC
Confidence 9984 34443 4433 5999999999999999999999999999999888887665 2 3445566788
Q ss_pred CCEEEEEeCCCeEEEEEcccceeEEEeecC-CCCeeeEEECCCCcEEEEEe--CCCcEEEEEcC
Q 002564 527 NGLLATVADDLVIRLFDVVALRMVRKFEGH-TDRITDFCFSEDGKWLLSSG--MDGSLRIWDVI 587 (907)
Q Consensus 527 ~~~la~~~~dg~I~v~d~~~~~~~~~~~~h-~~~I~~l~fspdg~~l~s~s--~Dg~I~vwd~~ 587 (907)
+.++++|+.|+.|++||+.++..+..+.+| ...+..+.++|...++++++ .|+.+++|...
T Consensus 391 ~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 391 GKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999999999999999999999999999999 89999999999999999998 78999999754
No 61
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2e-32 Score=260.70 Aligned_cols=277 Identities=22% Similarity=0.358 Sum_probs=207.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCcee
Q 002564 180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL 259 (907)
Q Consensus 180 h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~ 259 (907)
....|.|+.+.. ..+++|..|++|+|||..+-.++..+.+| .+.|.|+.|. .+ ++++|++|.+|++||.+++++
T Consensus 196 ~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GH-tGSVLCLqyd--~r-viisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 196 NSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGH-TGSVLCLQYD--ER-VIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred cCCceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcC-CCcEEeeecc--ce-EEEecCCCceEEEEeccCCch
Confidence 356899998854 46999999999999999988888888876 8999999995 44 899999999999999999999
Q ss_pred eeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEE
Q 002564 260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR 339 (907)
Q Consensus 260 ~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~ 339 (907)
+.++- +|...|..+.|+.+ ++++++.|.++.+||+..+. ...+.+.+.||...|+.+.|+ .+++++++.|++|+
T Consensus 270 l~tli-hHceaVLhlrf~ng--~mvtcSkDrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTik 343 (499)
T KOG0281|consen 270 LNTLI-HHCEAVLHLRFSNG--YMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIK 343 (499)
T ss_pred hhHHh-hhcceeEEEEEeCC--EEEEecCCceeEEEeccCch-HHHHHHHHhhhhhheeeeccc--cceEEEecCCceEE
Confidence 99998 89999999999744 89999999999999998776 445667788999999999996 55999999999999
Q ss_pred EEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeec
Q 002564 340 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP 419 (907)
Q Consensus 340 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~ 419 (907)
+|++.+...++.+.
T Consensus 344 vW~~st~efvRtl~------------------------------------------------------------------ 357 (499)
T KOG0281|consen 344 VWSTSTCEFVRTLN------------------------------------------------------------------ 357 (499)
T ss_pred EEeccceeeehhhh------------------------------------------------------------------
Confidence 99987665544432
Q ss_pred CCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEE
Q 002564 420 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK 499 (907)
Q Consensus 420 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 499 (907)
+|...|-|+.+ .++++++|+.|.+|+
T Consensus 358 ----------------------------------------------------gHkRGIAClQY--r~rlvVSGSSDntIR 383 (499)
T KOG0281|consen 358 ----------------------------------------------------GHKRGIACLQY--RDRLVVSGSSDNTIR 383 (499)
T ss_pred ----------------------------------------------------cccccceehhc--cCeEEEecCCCceEE
Confidence 34444444333 234445555555555
Q ss_pred EEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccce---------eEEEeecCCCCeeeEEECCCC
Q 002564 500 VWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR---------MVRKFEGHTDRITDFCFSEDG 569 (907)
Q Consensus 500 iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~---------~~~~~~~h~~~I~~l~fspdg 569 (907)
+||+..|.+++.++++ .-|.++.|. .+.+++|..||+|+|||+.++. ++..+..|+++|..+.| |.
T Consensus 384 lwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~ 459 (499)
T KOG0281|consen 384 LWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DE 459 (499)
T ss_pred EEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cc
Confidence 5555555554444443 334444442 3444555555555555544332 34556679999999999 66
Q ss_pred cEEEEEeCCCcEEEEEcCCCcee
Q 002564 570 KWLLSSGMDGSLRIWDVILARQI 592 (907)
Q Consensus 570 ~~l~s~s~Dg~I~vwd~~~~~~~ 592 (907)
..+++++.|.+|-|||...+..-
T Consensus 460 fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 460 FQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred eEEEeccCCCeEEEEEcCCCCcc
Confidence 78999999999999999876543
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=8.3e-30 Score=303.60 Aligned_cols=301 Identities=15% Similarity=0.272 Sum_probs=236.5
Q ss_pred CCcEEEEecCCCeEEEEE-----cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCC----c----eEEEEeecCCCC
Q 002564 160 EGSLQLWNISTKKKLYEF-----KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD----E----ELVTFTHSMRGA 226 (907)
Q Consensus 160 dg~i~iwd~~~~~~~~~~-----~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~----~----~~~~~~~~~~~~ 226 (907)
+|.+++|+..+.+....+ ..|...|.+++|+|+++++|+|+.|+.|+||+.... . ....+.. ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~--~~~ 534 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS--RSK 534 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc--cCc
Confidence 667888988776655443 358999999999999999999999999999997532 1 1222222 468
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEec-CCCEEEEEcCCCcEEEEEccCCCCCcc
Q 002564 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPR 305 (907)
Q Consensus 227 v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~ 305 (907)
+.+++|++....+|++++.||.|++||+.+++.+..+. +|.+.|++++|+| ++.+|++|+.|+.|++||+... .
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~----~ 609 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG----V 609 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC----c
Confidence 99999998644489999999999999999999988887 8999999999997 7889999999999999998754 3
Q ss_pred eeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeeccc
Q 002564 306 LLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 384 (907)
Q Consensus 306 ~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (907)
.+..+..+ ..+.++.|.+ +|.++++|+.||.|++||++....
T Consensus 610 ~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~------------------------------------ 652 (793)
T PLN00181 610 SIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL------------------------------------ 652 (793)
T ss_pred EEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc------------------------------------
Confidence 34444433 5788888854 688888888888888888643210
Q ss_pred ccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeec
Q 002564 385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 464 (907)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 464 (907)
....+
T Consensus 653 -------------------------------------------------------------------------~~~~~-- 657 (793)
T PLN00181 653 -------------------------------------------------------------------------PLCTM-- 657 (793)
T ss_pred -------------------------------------------------------------------------cceEe--
Confidence 00111
Q ss_pred cccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC------ceeeeeecC-cceeEEEEeeCCCEEEEEeCCC
Q 002564 465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR------DLKSRWEVG-CSLVKIVYHRVNGLLATVADDL 537 (907)
Q Consensus 465 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg 537 (907)
.+|...|.++.|. ++.++++++.|++|++||+..+ ..+..+..+ ..+..++|++++.+|++|+.|+
T Consensus 658 ------~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~ 730 (793)
T PLN00181 658 ------IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN 730 (793)
T ss_pred ------cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 2688888888886 6678888889999999988642 445555544 6788999999999999999999
Q ss_pred eEEEEEcccceeEEEe-------------ecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEc
Q 002564 538 VIRLFDVVALRMVRKF-------------EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586 (907)
Q Consensus 538 ~I~v~d~~~~~~~~~~-------------~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~ 586 (907)
.|++|+......+..+ ..|...|.+++|+|++..|++|+.||.|+||++
T Consensus 731 ~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 731 EVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999998765433222 234567999999999999999999999999996
No 63
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=2e-30 Score=285.99 Aligned_cols=288 Identities=24% Similarity=0.409 Sum_probs=248.7
Q ss_pred CCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe--EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEc-cCC
Q 002564 137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK--KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNV-RYD 213 (907)
Q Consensus 137 ~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~--~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~-~~~ 213 (907)
...+..+.|+|++ +.+++++.++.+++|+..+++ ..+.+.+|...|..++|+|+++++++|+.|++|+|||+ ..+
T Consensus 159 ~~sv~~~~fs~~g--~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 159 CPSVTCVDFSPDG--RALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred cCceEEEEEcCCC--CeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC
Confidence 3445567899999 789999999999999998888 78888999999999999999999999999999999999 455
Q ss_pred ceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEE
Q 002564 214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293 (907)
Q Consensus 214 ~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~ 293 (907)
..++++..| ...|++++|+|+|+ ++++|+.|++|+|||++++++...+. +|...|++++|++++++|++++.|+.|+
T Consensus 237 ~~~~~l~gH-~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is~~~f~~d~~~l~s~s~d~~i~ 313 (456)
T KOG0266|consen 237 RNLKTLKGH-STYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGISGLAFSPDGNLLVSASYDGTIR 313 (456)
T ss_pred eEEEEecCC-CCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeEEEeee-ccCCceEEEEECCCCCEEEEcCCCccEE
Confidence 788888855 88999999999996 99999999999999999999999999 9999999999999999999999999999
Q ss_pred EEEccCCCCCcceeEeccCCCCC--CeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhc
Q 002564 294 MWIFDTTDGDPRLLRFRSGHSAP--PLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEEL 371 (907)
Q Consensus 294 vw~~~~~~~~~~~~~~~~~h~~~--v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (907)
+||+...... +...+.++..+ +++++|+|++.++++++.|+.+++|++..............
T Consensus 314 vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~-------------- 377 (456)
T KOG0266|consen 314 VWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN-------------- 377 (456)
T ss_pred EEECCCCcee--eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC--------------
Confidence 9998766321 34555565555 99999999999999999999999999987766555432100
Q ss_pred ccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 002564 372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERF 451 (907)
Q Consensus 372 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~ 451 (907)
....+.+...++.|.++++|+.|+.|++|
T Consensus 378 ---------------------------------------------------~~~~~~~~~~~~~~~~i~sg~~d~~v~~~ 406 (456)
T KOG0266|consen 378 ---------------------------------------------------LVRCIFSPTLSTGGKLIYSGSEDGSVYVW 406 (456)
T ss_pred ---------------------------------------------------cceeEecccccCCCCeEEEEeCCceEEEE
Confidence 00234445558899999999999999999
Q ss_pred eCCCCccceeeeccccccccCc-CCcEEEEEEcCCCCEEEEEe--cCCeEEEEECC
Q 002564 452 NLQSGISRGSYLDMSERSNYAH-NGEVVGVACDSTNTLMISAG--YHGDIKVWDFK 504 (907)
Q Consensus 452 d~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~--~dg~i~iwd~~ 504 (907)
++.++..+..+. +| ...+..+.+++...++++++ .|+.+++|...
T Consensus 407 ~~~s~~~~~~l~--------~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 407 DSSSGGILQRLE--------GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eCCccchhhhhc--------CCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999988888875 88 89999999999999999998 78999999754
No 64
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=4.3e-30 Score=232.38 Aligned_cols=284 Identities=15% Similarity=0.216 Sum_probs=246.2
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEE
Q 002564 173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW 252 (907)
Q Consensus 173 ~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iw 252 (907)
..+.+..+.++|.++.|+-+|+|.++++.|.+|++||...+..++++..| ...|..++.+.|+. -+++|+.|..+.+|
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh-G~EVlD~~~s~Dns-kf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH-GHEVLDAALSSDNS-KFASCGGDKAVQVW 86 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCC-Cceeeecccccccc-ccccCCCCceEEEE
Confidence 45677889999999999999999999999999999999999999999887 77899999999988 79999999999999
Q ss_pred ECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEE
Q 002564 253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA 332 (907)
Q Consensus 253 d~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~ 332 (907)
|+++|+....+. +|.+.|+.+.|+.+...+++|+.|.++++||.+.... ..++.+......|.++... +..|+.|
T Consensus 87 DV~TGkv~Rr~r-gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~--ePiQildea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 87 DVNTGKVDRRFR-GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF--EPIQILDEAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EcccCeeeeecc-cccceeeEEEecCcceEEEeccccceeEEEEcccCCC--CccchhhhhcCceeEEEec--ccEEEee
Confidence 999999999999 9999999999999999999999999999998876644 5567777788889998886 5689999
Q ss_pred eCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeecee
Q 002564 333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL 412 (907)
Q Consensus 333 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~ 412 (907)
+.||++|.||++.++.....
T Consensus 162 S~DGtvRtydiR~G~l~sDy------------------------------------------------------------ 181 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSSDY------------------------------------------------------------ 181 (307)
T ss_pred ccCCcEEEEEeecceeehhh------------------------------------------------------------
Confidence 99999999999876543322
Q ss_pred cceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEE--EEEEcCCCCEEE
Q 002564 413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV--GVACDSTNTLMI 490 (907)
Q Consensus 413 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~--~l~~s~~~~~l~ 490 (907)
...+|++++++++|+..++++-++++++.|-.+|+.+..+. +|...-. ..+++.....++
T Consensus 182 ----------~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk--------Ghkn~eykldc~l~qsdthV~ 243 (307)
T KOG0316|consen 182 ----------FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK--------GHKNMEYKLDCCLNQSDTHVF 243 (307)
T ss_pred ----------cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc--------ccccceeeeeeeecccceeEE
Confidence 12789999999999999999999999999999999999986 8876543 345566667899
Q ss_pred EEecCCeEEEEECCCCceeeeeecCcc--eeEEEEeeCCCEEEEEeCCCeEEEE
Q 002564 491 SAGYHGDIKVWDFKGRDLKSRWEVGCS--LVKIVYHRVNGLLATVADDLVIRLF 542 (907)
Q Consensus 491 s~~~dg~i~iwd~~~~~~~~~~~~~~~--i~~~~~s~~~~~la~~~~dg~I~v~ 542 (907)
+|+.||.|.+||+.....+..+..++. +..+.++|.-..++++.. +.+..|
T Consensus 244 sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~ 296 (307)
T KOG0316|consen 244 SGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFW 296 (307)
T ss_pred eccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceece
Confidence 999999999999999999988887743 688999997766666654 344444
No 65
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=8.5e-32 Score=253.98 Aligned_cols=291 Identities=22% Similarity=0.339 Sum_probs=249.8
Q ss_pred eeeEecCCCcc-cEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEc--------CCCCCEEEEEEcCCCCEEEEEe
Q 002564 130 VGHVKLDDKFT-PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK--------GWGSSISSCVSSPALDVVAVGC 200 (907)
Q Consensus 130 ~~~~~~~~~~~-~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~--------~h~~~I~~l~~sp~~~~la~g~ 200 (907)
.+++++....- -++.|+|++ +++++|+.||-|.+||..+|+....++ -+..+|.|+.||.|...||+|+
T Consensus 205 ~r~IKFg~KSh~EcA~FSPDg--qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs 282 (508)
T KOG0275|consen 205 ARSIKFGQKSHVECARFSPDG--QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS 282 (508)
T ss_pred hhheecccccchhheeeCCCC--ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC
Confidence 45666665443 445599999 999999999999999999998765543 4688999999999999999999
Q ss_pred cCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCC
Q 002564 201 SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE 280 (907)
Q Consensus 201 ~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~ 280 (907)
.||.|++|.+.+|.+++.|...|...|+|+.|+.|+. .+.+++.|.++++.-+.+|+++..++ +|.+.|+...|.++|
T Consensus 283 qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~dG 360 (508)
T KOG0275|consen 283 QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTDDG 360 (508)
T ss_pred cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchhHHHhc-CccccccceEEcCCC
Confidence 9999999999999999999987889999999999998 78899999999999999999999999 999999999999999
Q ss_pred CEEEEEcCCCcEEEEEccCCCCCcceeEec--cCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhh
Q 002564 281 PVLMSASADNSIKMWIFDTTDGDPRLLRFR--SGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357 (907)
Q Consensus 281 ~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~--~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 357 (907)
..+++++.||+|++|+..+.. ++.++ .+...+|.++...| +...++.|...+++.+.++. ++..+.++.+.
T Consensus 361 ~~iisaSsDgtvkvW~~Ktte----C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGk- 434 (508)
T KOG0275|consen 361 HHIISASSDGTVKVWHGKTTE----CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGK- 434 (508)
T ss_pred CeEEEecCCccEEEecCcchh----hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCC-
Confidence 999999999999999876553 33322 34566889998888 67789999999999998864 22333322211
Q ss_pred hHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCC
Q 002564 358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN 437 (907)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 437 (907)
...+...++++||.|.
T Consensus 435 ----------------------------------------------------------------REgGdFi~~~lSpkGe 450 (508)
T KOG0275|consen 435 ----------------------------------------------------------------REGGDFINAILSPKGE 450 (508)
T ss_pred ----------------------------------------------------------------ccCCceEEEEecCCCc
Confidence 1126677889999999
Q ss_pred EEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564 438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (907)
Q Consensus 438 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 502 (907)
++.+.+.|+.++.|+..+|.....+. -|...|.+++-+|..+.+++-+.||.+++|.
T Consensus 451 wiYcigED~vlYCF~~~sG~LE~tl~--------VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 451 WIYCIGEDGVLYCFSVLSGKLERTLP--------VHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEEccCcEEEEEEeecCceeeeee--------cccccccccccCcccchhhhhcccchhhhcC
Confidence 99999999999999999999988886 8999999999999999999999999999994
No 66
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=9.2e-32 Score=256.26 Aligned_cols=275 Identities=16% Similarity=0.257 Sum_probs=232.3
Q ss_pred CCcceEEEEEecCeEEEEE-cCeEEEEeCCe--eEEEEcccccceEEEEeeCCEEEEEecCCcEEEEecCCCCcccccee
Q 002564 55 LPKKIRALASYRDYTFAAY-GNHIAVVKRAH--QVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVG 131 (907)
Q Consensus 55 ~~~~I~~la~~~~~~~~a~-g~~I~vw~~~~--~~~~~~~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~ 131 (907)
....|.|+.+..+...-+. .++|.+||... +++.+.||++.|.|+.++...|+||+.|.+|+|||+++++. ++
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~----l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEP----LN 271 (499)
T ss_pred cCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCch----hh
Confidence 3567888888655433333 34499999765 36669999999999999999999999999999999999999 66
Q ss_pred eEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe---EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEE
Q 002564 132 HVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK---KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVH 208 (907)
Q Consensus 132 ~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~---~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iw 208 (907)
++-.|...+....|+. +++++++.|.++.+||+.+.. +.+.+.||.+.|+.+.|+. +++++++.|.+|++|
T Consensus 272 tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW 345 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVW 345 (499)
T ss_pred HHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEE
Confidence 6666777777777765 579999999999999997654 3355789999999999975 499999999999999
Q ss_pred EccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcC
Q 002564 209 NVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA 288 (907)
Q Consensus 209 d~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~ 288 (907)
++.+++.+.++.+| +..|.|+.+. |+ ++++|++|.+|++||++.|.++..+. +|..-|.++.|. .+.+++|+.
T Consensus 346 ~~st~efvRtl~gH-kRGIAClQYr--~r-lvVSGSSDntIRlwdi~~G~cLRvLe-GHEeLvRciRFd--~krIVSGaY 418 (499)
T KOG0281|consen 346 STSTCEFVRTLNGH-KRGIACLQYR--DR-LVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRFD--NKRIVSGAY 418 (499)
T ss_pred eccceeeehhhhcc-cccceehhcc--Ce-EEEecCCCceEEEEeccccHHHHHHh-chHHhhhheeec--Cceeeeccc
Confidence 99999999999887 7779999884 56 99999999999999999999999999 999999999994 668999999
Q ss_pred CCcEEEEEccCCCCC-----cceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceeccc
Q 002564 289 DNSIKMWIFDTTDGD-----PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348 (907)
Q Consensus 289 d~~i~vw~~~~~~~~-----~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~ 348 (907)
||.|++||+...... ..++.....|++.|..+.|. ...+++++.|.+|.+||...+..
T Consensus 419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred cceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCc
Confidence 999999999765432 12456667899999999995 56899999999999999876543
No 67
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.4e-29 Score=299.66 Aligned_cols=303 Identities=12% Similarity=0.178 Sum_probs=244.0
Q ss_pred CCcEEEEECCCceeeeeeec----ccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC----cceeEeccCCCCCC
Q 002564 246 SGVISIWNLEKRRLQSVIRE----AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD----PRLLRFRSGHSAPP 317 (907)
Q Consensus 246 dg~I~iwd~~~~~~~~~~~~----~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~----~~~~~~~~~h~~~v 317 (907)
+|.+++|+..+.+....+.. .|.+.|.+++|+|++.++++|+.|+.|++|++...... ....... .+...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCce
Confidence 67788898877665444332 48999999999999999999999999999987542111 0112222 234678
Q ss_pred eEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEe
Q 002564 318 LCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 396 (907)
Q Consensus 318 ~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 396 (907)
.+++|++ ++.+|++++.||.|++||+.+++....+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~-------------------------------------------- 571 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM-------------------------------------------- 571 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe--------------------------------------------
Confidence 9999987 5789999999999999998754432221
Q ss_pred eCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCC
Q 002564 397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG 475 (907)
Q Consensus 397 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 475 (907)
.+|...|.+++|+| +++++++|+.||.|++||+.++.....+. +..
T Consensus 572 ------------------------~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~---------~~~ 618 (793)
T PLN00181 572 ------------------------KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK---------TKA 618 (793)
T ss_pred ------------------------cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe---------cCC
Confidence 24568899999996 78999999999999999999888777663 335
Q ss_pred cEEEEEEc-CCCCEEEEEecCCeEEEEECCCCc-eeeeee-cCcceeEEEEeeCCCEEEEEeCCCeEEEEEccc------
Q 002564 476 EVVGVACD-STNTLMISAGYHGDIKVWDFKGRD-LKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA------ 546 (907)
Q Consensus 476 ~v~~l~~s-~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~-~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~------ 546 (907)
.|.++.|+ +++.++++|+.||.|++||+.+.+ ....+. +...|.++.|. ++.++++++.|+.|++||+..
T Consensus 619 ~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~ 697 (793)
T PLN00181 619 NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGIN 697 (793)
T ss_pred CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccC
Confidence 78999995 578999999999999999998765 344443 44789999997 688999999999999999974
Q ss_pred ceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEee--------------eCCceEEEEECCCCce
Q 002564 547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH--------------VDVSITALSLSPNMDV 612 (907)
Q Consensus 547 ~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~--------------~~~~v~~l~~spdg~~ 612 (907)
.+++..+.+|...++.++|+|++++|++|+.|+.|++|+...+..+..+. +...|.+++|+|++..
T Consensus 698 ~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~ 777 (793)
T PLN00181 698 ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST 777 (793)
T ss_pred CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence 36788999999999999999999999999999999999987665443322 1224999999999999
Q ss_pred EEEEEecCCeEEEeec
Q 002564 613 LATAHVDQNGVYLWVN 628 (907)
Q Consensus 613 lat~~~d~~~i~lW~~ 628 (907)
|++++.+| .|++|++
T Consensus 778 lva~~~dG-~I~i~~~ 792 (793)
T PLN00181 778 LVAANSTG-NIKILEM 792 (793)
T ss_pred EEEecCCC-cEEEEec
Confidence 99999999 5999985
No 68
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=3.9e-31 Score=249.54 Aligned_cols=285 Identities=21% Similarity=0.331 Sum_probs=239.5
Q ss_pred CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEee-------cCCCCEEEEEEecCCCCEEEEEeCCCcEEE
Q 002564 179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH-------SMRGAVTALAFSSDGQPLLASGASSGVISI 251 (907)
Q Consensus 179 ~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~-------~~~~~v~~l~fs~dg~~~l~sg~~dg~I~i 251 (907)
+..+.+.|..|||||++|++|+.||-|.+||..+|+....+.- -+..+|.|++|+.|.. ++|+|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCcEEE
Confidence 3466788999999999999999999999999999986554431 1357899999999999 9999999999999
Q ss_pred EECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEE
Q 002564 252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331 (907)
Q Consensus 252 wd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s 331 (907)
|.+.+|.++..+..+|...|+++.|+.|+..+++++.|.++++.-+..+ ++++.+.||+..|+...|.+||.++++
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG----K~LKEfrGHsSyvn~a~ft~dG~~iis 365 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG----KCLKEFRGHSSYVNEATFTDDGHHIIS 365 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc----hhHHHhcCccccccceEEcCCCCeEEE
Confidence 9999999999999899999999999999999999999999999966554 678889999999999999999999999
Q ss_pred EeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeece
Q 002564 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411 (907)
Q Consensus 332 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~ 411 (907)
++.||++++|+..+..+...+..
T Consensus 366 aSsDgtvkvW~~KtteC~~Tfk~--------------------------------------------------------- 388 (508)
T KOG0275|consen 366 ASSDGTVKVWHGKTTECLSTFKP--------------------------------------------------------- 388 (508)
T ss_pred ecCCccEEEecCcchhhhhhccC---------------------------------------------------------
Confidence 99999999999876655444321
Q ss_pred ecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-CEEE
Q 002564 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMI 490 (907)
Q Consensus 412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~ 490 (907)
.+...+|..+..-|.+ ..++
T Consensus 389 -----------------------------------------------------------~~~d~~vnsv~~~PKnpeh~i 409 (508)
T KOG0275|consen 389 -----------------------------------------------------------LGTDYPVNSVILLPKNPEHFI 409 (508)
T ss_pred -----------------------------------------------------------CCCcccceeEEEcCCCCceEE
Confidence 1222334444444433 4566
Q ss_pred EEecCCeEEEEECCCCceeeeeecC----cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEEC
Q 002564 491 SAGYHGDIKVWDFKGRDLKSRWEVG----CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS 566 (907)
Q Consensus 491 s~~~dg~i~iwd~~~~~~~~~~~~~----~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fs 566 (907)
+|...+++.+.++. |+.++.+..+ +...+.+.+|.|.++.+.++|+.++-|.+.+|++.+++.-|...|..++-+
T Consensus 410 VCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HH 488 (508)
T KOG0275|consen 410 VCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHH 488 (508)
T ss_pred EEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccC
Confidence 66666777777654 3445555332 567788999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEE
Q 002564 567 EDGKWLLSSGMDGSLRIWD 585 (907)
Q Consensus 567 pdg~~l~s~s~Dg~I~vwd 585 (907)
|..+.|++-+.||.+++|.
T Consensus 489 PHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 489 PHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccchhhhhcccchhhhcC
Confidence 9999999999999999995
No 69
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.4e-29 Score=233.53 Aligned_cols=292 Identities=13% Similarity=0.194 Sum_probs=233.1
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 002564 176 EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE 255 (907)
Q Consensus 176 ~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~ 255 (907)
.+++|..+++.+.++.+|++|.+++.|....+|-..+|+.+.++.+| .+.|.|+....+.+ .+++|+.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GH-tGavW~~Did~~s~-~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGH-TGAVWCCDIDWDSK-HLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCC-CceEEEEEecCCcc-eeeeccccceeEEEEcC
Confidence 36789999999999999999999999999999999999999999987 89999999999988 89999999999999999
Q ss_pred CceeeeeeecccccCeEEEEEecCCCEEEEEcC-----CCcEEEEEccCCCC---CcceeEeccCCCCCCeEEEEecCCC
Q 002564 256 KRRLQSVIREAHDNAIISLHFFANEPVLMSASA-----DNSIKMWIFDTTDG---DPRLLRFRSGHSAPPLCIRFYANGR 327 (907)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-----d~~i~vw~~~~~~~---~~~~~~~~~~h~~~v~~i~~~~~g~ 327 (907)
+|+.+..++ ...+|..+.|+++|++++.+.. .+.|.++++..... ...+......+...++.+-|.|-++
T Consensus 83 tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 83 TGKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred CCcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 999999997 6789999999999998777654 35678887764321 0111222333445555555555555
Q ss_pred EEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEe
Q 002564 328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL 407 (907)
Q Consensus 328 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~ 407 (907)
+|++|..||.|..||+
T Consensus 161 ~ii~Ghe~G~is~~da---------------------------------------------------------------- 176 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDA---------------------------------------------------------------- 176 (327)
T ss_pred EEEEecCCCcEEEEEc----------------------------------------------------------------
Confidence 5555555555555554
Q ss_pred eeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCC
Q 002564 408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT 487 (907)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 487 (907)
.+|.....-. ..|...|+.+.++++..
T Consensus 177 ----------------------------------------------~~g~~~v~s~-------~~h~~~Ind~q~s~d~T 203 (327)
T KOG0643|consen 177 ----------------------------------------------RTGKELVDSD-------EEHSSKINDLQFSRDRT 203 (327)
T ss_pred ----------------------------------------------ccCceeeech-------hhhccccccccccCCcc
Confidence 4443222221 37888999999999999
Q ss_pred EEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCe--------------EEEEEcccceeEEEe
Q 002564 488 LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLV--------------IRLFDVVALRMVRKF 553 (907)
Q Consensus 488 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~--------------I~v~d~~~~~~~~~~ 553 (907)
++++++.|.+-++||+.+-+.++++....|+++.+++|....++.|+.-.. .++|++-..+.+..+
T Consensus 204 ~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv 283 (327)
T KOG0643|consen 204 YFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV 283 (327)
T ss_pred eEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999998887777653221 223333333557778
Q ss_pred ecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCC
Q 002564 554 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (907)
Q Consensus 554 ~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~ 588 (907)
+||-++|++++|+|+|+-.++|+.||.||+.-...
T Consensus 284 kGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 284 KGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 99999999999999999999999999999986654
No 70
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=233.56 Aligned_cols=276 Identities=17% Similarity=0.208 Sum_probs=245.5
Q ss_pred ccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEce
Q 002564 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVI 344 (907)
Q Consensus 266 ~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~ 344 (907)
+|...|.+++|..+|..|++++.|+++++|+++... ...-....+|.+.|-.++|+| ....+++++.|.++++||++
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r--~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR--FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchh--hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 789999999999999999999999999999988662 223344568999999999998 67799999999999999999
Q ss_pred ecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCC
Q 002564 345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 424 (907)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~ 424 (907)
..++...... .
T Consensus 96 ~~k~~~~i~~---------------------------------------------------------------------~ 106 (313)
T KOG1407|consen 96 SGKCTARIET---------------------------------------------------------------------K 106 (313)
T ss_pred cCcEEEEeec---------------------------------------------------------------------c
Confidence 8877655432 1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (907)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 504 (907)
..-..++|+|+|+++++|..|..|..+|..+.+..... .....+..++|+.++.+++.....|+|.|..+.
T Consensus 107 ~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~---------~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp 177 (313)
T KOG1407|consen 107 GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE---------QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP 177 (313)
T ss_pred CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh---------cccceeeeeeecCCCCEEEEecCCceEEEEecc
Confidence 34456789999999999999999999999988777665 355678889999888888777778999999999
Q ss_pred CCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEE
Q 002564 505 GRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 583 (907)
Q Consensus 505 ~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~v 583 (907)
.-+++..++.+ ....|+.|+|+|+++|+|+.|..+.+||++..-+++.+..+.-+|..+.||.||++||+||+|..|-|
T Consensus 178 sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 178 SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEe
Confidence 99999888765 78889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCC
Q 002564 584 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN 621 (907)
Q Consensus 584 wd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~ 621 (907)
=++++|..+..++..++...++|+|...+||.++.|..
T Consensus 258 A~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 258 AEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred EecccCCeEEEeeccCCceeEEecCCCceeeEEecCCC
Confidence 99999999999999999999999999999999998763
No 71
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=5.4e-29 Score=229.75 Aligned_cols=232 Identities=19% Similarity=0.272 Sum_probs=203.5
Q ss_pred EcccccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEE
Q 002564 89 WSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW 166 (907)
Q Consensus 89 ~~~h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iw 166 (907)
+.||+.+++.+.+ +|+.|+||+.|.+..||--..++. +.++.+|.+.+++|.+..+. +++++|+.|.++++|
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer----lGty~GHtGavW~~Did~~s--~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER----LGTYDGHTGAVWCCDIDWDS--KHLITGSADQTAKLW 79 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCce----eeeecCCCceEEEEEecCCc--ceeeeccccceeEEE
Confidence 7899999999998 699999999999999999989999 89999999999999999999 899999999999999
Q ss_pred ecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecC-----CeEEEEEcc-------CCceEEEEeecCCCCEEEEEEec
Q 002564 167 NISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVR-------YDEELVTFTHSMRGAVTALAFSS 234 (907)
Q Consensus 167 d~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d-----g~I~iwd~~-------~~~~~~~~~~~~~~~v~~l~fs~ 234 (907)
|+++|+++..++. ..+|..+.|+++|++++....+ +.|.++|++ ..++...+..+ ...++.+-|.|
T Consensus 80 Dv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~-~skit~a~Wg~ 157 (327)
T KOG0643|consen 80 DVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP-DSKITSALWGP 157 (327)
T ss_pred EcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC-ccceeeeeecc
Confidence 9999999999987 7899999999999988877543 779999998 44567777766 68999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCC
Q 002564 235 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS 314 (907)
Q Consensus 235 dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (907)
-++ .+++|..+|.|.+||+++|+....-...|...|+.++++++..++++++.|.+-++||+.+- .+++++ ...
T Consensus 158 l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl----~v~Kty-~te 231 (327)
T KOG0643|consen 158 LGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL----EVLKTY-TTE 231 (327)
T ss_pred cCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce----eeEEEe-eec
Confidence 999 89999999999999999985544443489999999999999999999999999999998765 344444 356
Q ss_pred CCCeEEEEecCCCEEEEEeC
Q 002564 315 APPLCIRFYANGRHILSAGQ 334 (907)
Q Consensus 315 ~~v~~i~~~~~g~~l~s~~~ 334 (907)
.||++.+++|...+++.|+.
T Consensus 232 ~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 232 RPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred ccccceecccccceEEecCC
Confidence 79999999996666666553
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.6e-29 Score=230.65 Aligned_cols=280 Identities=16% Similarity=0.258 Sum_probs=246.1
Q ss_pred ccccCeEEEEEec---CCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEE
Q 002564 266 AHDNAIISLHFFA---NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 342 (907)
Q Consensus 266 ~h~~~V~~l~~~~---~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd 342 (907)
+|..+|..++|+| +|-+|++++.|+.-.+-+=+++ .-+.++.||.+.|++.....+....++++.|-+-++||
T Consensus 12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg----dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG----DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC----CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 8999999999986 7889999999998777644443 45778899999999999998888889999999999999
Q ss_pred ceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCC
Q 002564 343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422 (907)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~ 422 (907)
..++.....+ .
T Consensus 88 a~tgdelhsf---------------------------------------------------------------------~ 98 (334)
T KOG0278|consen 88 AVTGDELHSF---------------------------------------------------------------------E 98 (334)
T ss_pred hhhhhhhhhh---------------------------------------------------------------------h
Confidence 8877665554 2
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (907)
Q Consensus 423 ~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 502 (907)
|...|.+++|+.|.+++++|+.+..+++||++.......- ..+|.+.|..+.|....+.++++..|++||+||
T Consensus 99 hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E-------~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD 171 (334)
T KOG0278|consen 99 HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKE-------ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWD 171 (334)
T ss_pred hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchh-------hcCCCCcceeEEEeccCceEEeeccCCceEEEE
Confidence 3467899999999999999999999999999876543322 259999999999999889999999999999999
Q ss_pred CCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEE
Q 002564 503 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR 582 (907)
Q Consensus 503 ~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~ 582 (907)
..++..++++....+++++.++++|++|.++. .+.|.+||..+..+++.+.- .-.|.+...+|+...+++|+.|..++
T Consensus 172 ~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~ 249 (334)
T KOG0278|consen 172 HRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVY 249 (334)
T ss_pred eccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEE
Confidence 99999999999999999999999999887764 57899999999999888774 35689999999999999999999999
Q ss_pred EEEcCCCceeeEe-e-eCCceEEEEECCCCceEEEEEecCCeEEEeec
Q 002564 583 IWDVILARQIDAI-H-VDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (907)
Q Consensus 583 vwd~~~~~~~~~~-~-~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~ 628 (907)
.||..+|..+..+ + ++.+|.++.|+|||..-|+++.|| +|+||..
T Consensus 250 kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG-TirlWQt 296 (334)
T KOG0278|consen 250 KFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDG-TIRLWQT 296 (334)
T ss_pred EEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCc-eEEEEEe
Confidence 9999999999886 3 466799999999999999999999 7999985
No 73
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=4e-29 Score=234.97 Aligned_cols=291 Identities=21% Similarity=0.327 Sum_probs=242.0
Q ss_pred ecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCC------------c------eeeeeeecccccCeEEEEEecCCCE
Q 002564 221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK------------R------RLQSVIREAHDNAIISLHFFANEPV 282 (907)
Q Consensus 221 ~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~------------~------~~~~~~~~~h~~~V~~l~~~~~~~~ 282 (907)
..|++++.+.+|++||. ++|+|+.|..|+|.|++. + -.+.++. .|...|+++.|+|....
T Consensus 109 t~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHPRETI 186 (430)
T ss_pred eecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecchhhe
Confidence 34589999999999999 999999999999999861 1 2345555 79999999999999999
Q ss_pred EEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHh
Q 002564 283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR 362 (907)
Q Consensus 283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 362 (907)
|++++.|++|+++|+...... +..+.+ ....+|.++.|+|.|.+|+.|..-..+++||+.+-++-..
T Consensus 187 LiS~srD~tvKlFDfsK~saK-rA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs----------- 253 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAK-RAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS----------- 253 (430)
T ss_pred EEeccCCCeEEEEecccHHHH-HHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee-----------
Confidence 999999999999999765432 222222 3467899999999999999999999999999876543221
Q ss_pred hccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEE
Q 002564 363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG 442 (907)
Q Consensus 363 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 442 (907)
..+..+|...|+++.+++.|+..++|
T Consensus 254 ------------------------------------------------------anPd~qht~ai~~V~Ys~t~~lYvTa 279 (430)
T KOG0640|consen 254 ------------------------------------------------------ANPDDQHTGAITQVRYSSTGSLYVTA 279 (430)
T ss_pred ------------------------------------------------------cCcccccccceeEEEecCCccEEEEe
Confidence 11334677999999999999999999
Q ss_pred eCCCcEEEEeCCCCccceeeeccccccccCcCC-cEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCc-----
Q 002564 443 TAGGWIERFNLQSGISRGSYLDMSERSNYAHNG-EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC----- 516 (907)
Q Consensus 443 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----- 516 (907)
+.||.|++||--+++++..+. .+|.+ .|.+..|..+++++++.|.|..+++|.+.+++++..+...+
T Consensus 280 SkDG~IklwDGVS~rCv~t~~-------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq 352 (430)
T KOG0640|consen 280 SKDGAIKLWDGVSNRCVRTIG-------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQ 352 (430)
T ss_pred ccCCcEEeeccccHHHHHHHH-------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccch
Confidence 999999999999999999987 57875 69999999999999999999999999999999999886641
Q ss_pred -ceeEEEEeeCCCEEEEEeC-CCeEEEEEcccceeEEEee-cCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcC
Q 002564 517 -SLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 587 (907)
Q Consensus 517 -~i~~~~~s~~~~~la~~~~-dg~I~v~d~~~~~~~~~~~-~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~ 587 (907)
--+...|.....+++.-.+ .+.+.-||.++...+..+. ||++.+..+.-||.+.-+++++.|..+|+|--.
T Consensus 353 ~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 353 KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 2344556666677666543 4688999999887666554 899999999999999999999999999999643
No 74
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.2e-28 Score=236.88 Aligned_cols=278 Identities=19% Similarity=0.314 Sum_probs=236.2
Q ss_pred CCcceEEEEEecCeEEEEE-cCeEEEEeC-CeeEEEEcccccceEEEEe---e--CCEEEEEecCCcEEEEecCCCCccc
Q 002564 55 LPKKIRALASYRDYTFAAY-GNHIAVVKR-AHQVATWSRHSAKVNLLLL---F--GEHILSIDIDGNMFIWAFKGIEENL 127 (907)
Q Consensus 55 ~~~~I~~la~~~~~~~~a~-g~~I~vw~~-~~~~~~~~~h~~~V~~l~~---~--g~~l~s~~~dg~v~vWd~~~~~~~~ 127 (907)
|+..|.++...+...+..+ ++.+++|+. |+...++.||.++|.++++ + ...+++++.|.++++|.++.++...
T Consensus 104 hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~ 183 (423)
T KOG0313|consen 104 HDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV 183 (423)
T ss_pred chhhhhhhcccCceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh
Confidence 6777888877766666544 777999995 7778889999999998885 1 3469999999999999999888755
Q ss_pred cceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCC-------------------------CeEEEEEcCCCC
Q 002564 128 APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST-------------------------KKKLYEFKGWGS 182 (907)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~-------------------------~~~~~~~~~h~~ 182 (907)
..+..-.+|...+-++...+++ .++++|+.|..|.+|+..+ +.++.++.||..
T Consensus 184 ~~~~~~~GHk~~V~sVsv~~sg--tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~ 261 (423)
T KOG0313|consen 184 KALKVCRGHKRSVDSVSVDSSG--TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE 261 (423)
T ss_pred hHHhHhcccccceeEEEecCCC--CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc
Confidence 5555556888888888899999 8999999999999999321 235677899999
Q ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc--e-e
Q 002564 183 SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--R-L 259 (907)
Q Consensus 183 ~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~--~-~ 259 (907)
+|.++.|++ ...+.+++.|.+|+.||+.++..+.++... ..+.|+..+|... +|++|+.|..|++||.+++ . .
T Consensus 262 ~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~--ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 262 PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN--KSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVV 337 (423)
T ss_pred ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC--cceeEeecccccc-eeeecCCCCceeecCCCCCCCcee
Confidence 999999999 568999999999999999999999988875 7899999999888 9999999999999999876 3 3
Q ss_pred eeeeecccccCeEEEEEecCC-CEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCE
Q 002564 260 QSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF 338 (907)
Q Consensus 260 ~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i 338 (907)
..++. +|.+.|.++.|+|.. ..|++++.||++++||++...+ .+..+.+|...|.++.|. ++..+++||.|.+|
T Consensus 338 ~~s~~-gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~---plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l 412 (423)
T KOG0313|consen 338 SQSLI-GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA---PLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKL 412 (423)
T ss_pred EEeee-cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC---cceeeccCCceEEEEecc-CCceEEeccCcceE
Confidence 34454 999999999999965 5788999999999999987652 466778999999999998 56699999999999
Q ss_pred EEEEc
Q 002564 339 RLFSV 343 (907)
Q Consensus 339 ~iwd~ 343 (907)
+++.-
T Consensus 413 ~i~~~ 417 (423)
T KOG0313|consen 413 RIFKG 417 (423)
T ss_pred EEecc
Confidence 99864
No 75
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.6e-27 Score=222.24 Aligned_cols=281 Identities=15% Similarity=0.210 Sum_probs=239.1
Q ss_pred CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcC--CCcEEEEEccCCC
Q 002564 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA--DNSIKMWIFDTTD 301 (907)
Q Consensus 224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~--d~~i~vw~~~~~~ 301 (907)
.+.|.++.|+++|. +|++++.|..+++||..+++.+.++. .+...+..++|......++.++. |.+|+..++...
T Consensus 14 ~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN- 90 (311)
T KOG1446|consen 14 NGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN- 90 (311)
T ss_pred CCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeEee-cccccccEEEEecCCceEEEccCCCCCceEEEEeecC-
Confidence 67899999999999 88888999999999999999999998 77788999999988888887776 899999988766
Q ss_pred CCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeee
Q 002564 302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 381 (907)
Q Consensus 302 ~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 381 (907)
+.++.+.||...|.+++.+|-+..+++++.|++|++||++..++...+..
T Consensus 91 ---kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~--------------------------- 140 (311)
T KOG1446|consen 91 ---KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL--------------------------- 140 (311)
T ss_pred ---ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec---------------------------
Confidence 78999999999999999999889999999999999999986655443321
Q ss_pred cccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--ccc
Q 002564 382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG--ISR 459 (907)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~--~~~ 459 (907)
..-..+|++|.|-++|++...+.|++||+++- .+.
T Consensus 141 -------------------------------------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF 177 (311)
T KOG1446|consen 141 -------------------------------------------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPF 177 (311)
T ss_pred -------------------------------------------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCc
Confidence 34456799999999999999999999999764 223
Q ss_pred eeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCc----ceeEEEEeeCCCEEEEEeC
Q 002564 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC----SLVKIVYHRVNGLLATVAD 535 (907)
Q Consensus 460 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~i~~~~~s~~~~~la~~~~ 535 (907)
..+.. ..+.....+.+.|+|+|++++.+...+.+.+.|.-+|..+.++.... -....+|+||++++.+|++
T Consensus 178 ~tf~i-----~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~ 252 (311)
T KOG1446|consen 178 TTFSI-----TDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD 252 (311)
T ss_pred eeEcc-----CCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecC
Confidence 33321 12456789999999999999999999999999999999888887652 2257889999999999999
Q ss_pred CCeEEEEEcccceeEEEeec-CCCCeeeEEECCCCcEEEEEeCCCcEEEEEcC
Q 002564 536 DLVIRLFDVVALRMVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 587 (907)
Q Consensus 536 dg~I~v~d~~~~~~~~~~~~-h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~ 587 (907)
||+|.+|+++++..+..+.+ +.+++.++.|+|.-..++++ +..+.+|=..
T Consensus 253 dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 253 DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence 99999999999999999999 78999999999976666655 5668888544
No 76
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=4e-29 Score=244.47 Aligned_cols=286 Identities=22% Similarity=0.379 Sum_probs=248.0
Q ss_pred eeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCE
Q 002564 259 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF 338 (907)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i 338 (907)
....+. .|.+.+..+.|.++...|++|+.|..|++|+..... .....++.|..++|+++.|.++++++++++.|+.+
T Consensus 167 ~~~~ld-~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~ 243 (459)
T KOG0288|consen 167 ALFVLD-AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK--SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL 243 (459)
T ss_pred hhhhhh-ccccccceeEEccCcchhhhcchhhhhhhhhcccch--hhhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence 334454 899999999999998899999999999999876654 45677888899999999999999999999999999
Q ss_pred EEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeee
Q 002564 339 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 418 (907)
Q Consensus 339 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~ 418 (907)
++|++...+....+
T Consensus 244 r~Wnvd~~r~~~TL------------------------------------------------------------------ 257 (459)
T KOG0288|consen 244 RLWNVDSLRLRHTL------------------------------------------------------------------ 257 (459)
T ss_pred eeeeccchhhhhhh------------------------------------------------------------------
Confidence 99998765544333
Q ss_pred cCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeE
Q 002564 419 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI 498 (907)
Q Consensus 419 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 498 (907)
.+|...|+++.+......++.|+.|.+|+.||++...+..++. ....+..|+.+ ...++++-.|+.|
T Consensus 258 --sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l---------~~S~cnDI~~~--~~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 258 --SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL---------PGSQCNDIVCS--ISDVISGHFDKKV 324 (459)
T ss_pred --cccccceeeehhhccccceeeccccchhhhhhhhhhheecccc---------ccccccceEec--ceeeeecccccce
Confidence 2577899999998888889999999999999999987777653 34456666665 4568888899999
Q ss_pred EEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecC----CCCeeeEEECCCCcEEEE
Q 002564 499 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH----TDRITDFCFSEDGKWLLS 574 (907)
Q Consensus 499 ~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h----~~~I~~l~fspdg~~l~s 574 (907)
++||..+..+....+.++.|+++..++++..+.+.+.|.++.++|+.+......+.+. ....+.+.|||++.|+++
T Consensus 325 RfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaA 404 (459)
T KOG0288|consen 325 RFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAA 404 (459)
T ss_pred EEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeee
Confidence 9999999999999999999999999999999999999999999999999888887642 234889999999999999
Q ss_pred EeCCCcEEEEEcCCCceeeEeeeCC---ceEEEEECCCCceEEEEEecCCeEEEee
Q 002564 575 SGMDGSLRIWDVILARQIDAIHVDV---SITALSLSPNMDVLATAHVDQNGVYLWV 627 (907)
Q Consensus 575 ~s~Dg~I~vwd~~~~~~~~~~~~~~---~v~~l~~spdg~~lat~~~d~~~i~lW~ 627 (907)
||.||.|+||++.+|++...+.... .|++++|+|.|..|++++.++ .+.+|.
T Consensus 405 GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~-~v~lW~ 459 (459)
T KOG0288|consen 405 GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQK-AVTLWT 459 (459)
T ss_pred ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCc-ceEecC
Confidence 9999999999999999998886532 499999999999999999988 699994
No 77
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.6e-28 Score=243.43 Aligned_cols=277 Identities=21% Similarity=0.306 Sum_probs=234.5
Q ss_pred CCCEEEEEEcCCCC-EEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCcee
Q 002564 181 GSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL 259 (907)
Q Consensus 181 ~~~I~~l~~sp~~~-~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~ 259 (907)
...|++++|+|... -+|+++. -.+.||+..+.....++... +..++++.|..||+ ++++|+..|.|+|||..+...
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srF-k~~v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~r~i 102 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRF-KDVVYSVDFRSDGR-LLAAGDESGHVKVFDMKSRVI 102 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhh-ccceeEEEeecCCe-EEEccCCcCcEEEeccccHHH
Confidence 57899999999654 3444443 57999999988777766654 67899999999999 999999999999999888778
Q ss_pred eeeeecccccCeEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCC
Q 002564 260 QSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRA 337 (907)
Q Consensus 260 ~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~ 337 (907)
+..+. +|+.+|..+.|+|.++ .+++|+.|+.+++||+++.. ....+.+|++.|.|.+|+| ++..++|||.||.
T Consensus 103 LR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~----v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~ 177 (487)
T KOG0310|consen 103 LRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY----VQAELSGHTDYVRCGDISPANDHIVVTGSYDGK 177 (487)
T ss_pred HHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE----EEEEecCCcceeEeeccccCCCeEEEecCCCce
Confidence 88888 9999999999999654 77788889999999988763 3557789999999999999 6678999999999
Q ss_pred EEEEEceecc-cceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceeccee
Q 002564 338 FRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI 416 (907)
Q Consensus 338 i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~ 416 (907)
|++||++... ...++
T Consensus 178 vrl~DtR~~~~~v~el---------------------------------------------------------------- 193 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVVEL---------------------------------------------------------------- 193 (487)
T ss_pred EEEEEeccCCceeEEe----------------------------------------------------------------
Confidence 9999998652 22222
Q ss_pred eecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCC
Q 002564 417 LRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG 496 (907)
Q Consensus 417 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 496 (907)
.|..+|..+.+-|.|..+++++ ...|++||+.+|....... ..|...|+|+.+..++..|++++-|+
T Consensus 194 -----nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~-------~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 194 -----NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSM-------FNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred -----cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhh-------hcccceEEEEEeecCCceEeeccccc
Confidence 3458899999999999988875 4579999999554433332 25999999999999999999999999
Q ss_pred eEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEE
Q 002564 497 DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLF 542 (907)
Q Consensus 497 ~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~ 542 (907)
.+++||+.+-+.+..+...++|.+++.+|+++.+++|..||.+.+-
T Consensus 261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence 9999999999999999999999999999999999999999987765
No 78
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.8e-28 Score=252.32 Aligned_cols=278 Identities=20% Similarity=0.339 Sum_probs=239.3
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeee
Q 002564 185 SSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR 264 (907)
Q Consensus 185 ~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~ 264 (907)
.-+.|+ ..+.||+|.. ..|.+|+..+++.......+ ...|+++.|+++|. +|++|..+|.|.|||..+.+.+..+.
T Consensus 181 nlldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred hHhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecC-CCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccccc
Confidence 345677 4567888775 57999999999866666554 78999999999999 99999999999999999999999998
Q ss_pred cccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEce
Q 002564 265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (907)
Q Consensus 265 ~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~ 344 (907)
..|...|-+++|. +..+.+|+.|+.|..+|+....... ..+.+|...|..+.|++|+.++++|+.|+.+.+||..
T Consensus 257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~---~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV---STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL 331 (484)
T ss_pred CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh---hhhhcccceeeeeEECCCCCeeccCCCccceEeccCC
Confidence 4499999999998 6689999999999999998775332 2477999999999999999999999999999999862
Q ss_pred ecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCC
Q 002564 345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 424 (907)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~ 424 (907)
....
T Consensus 332 ~~~p---------------------------------------------------------------------------- 335 (484)
T KOG0305|consen 332 SPEP---------------------------------------------------------------------------- 335 (484)
T ss_pred Cccc----------------------------------------------------------------------------
Confidence 2111
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCC-CCEEEEEe--cCCeEEEE
Q 002564 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAG--YHGDIKVW 501 (907)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~--~dg~i~iw 501 (907)
...+ ..|...|..++|+|- ..+||+|+ .|++|++|
T Consensus 336 ----------------------------------~~~~--------~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 336 ----------------------------------KFTF--------TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred ----------------------------------cEEE--------eccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 1111 379999999999994 46888876 79999999
Q ss_pred ECCCCceeeeeecCcceeEEEEeeCCCEEEEE--eCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCC
Q 002564 502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV--ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 579 (907)
Q Consensus 502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~--~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg 579 (907)
|..+++.+..+.....|..+.|++..+-++++ ..++.|.||+..+.+.+..+.+|..+|..+++||||..+++|+.|.
T Consensus 374 n~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DE 453 (484)
T KOG0305|consen 374 NTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADE 453 (484)
T ss_pred EcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccC
Confidence 99999999999999999999999998766654 4567999999999999999999999999999999999999999999
Q ss_pred cEEEEEcCCC
Q 002564 580 SLRIWDVILA 589 (907)
Q Consensus 580 ~I~vwd~~~~ 589 (907)
++++|++-..
T Consensus 454 Tlrfw~~f~~ 463 (484)
T KOG0305|consen 454 TLRFWNLFDE 463 (484)
T ss_pred cEEeccccCC
Confidence 9999998764
No 79
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=4.3e-29 Score=244.24 Aligned_cols=276 Identities=19% Similarity=0.344 Sum_probs=239.4
Q ss_pred CCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCce--eeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 002564 223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (907)
Q Consensus 223 ~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~ 300 (907)
|.+.+..+.|-++.. .|++|+.|..|++|+...++ .+.++. +..++|+++.|.+++.++++++.|+.+++|+++..
T Consensus 174 h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~ 251 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL 251 (459)
T ss_pred cccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence 478999999999866 79999999999999988776 677776 78889999999999999999999999999998765
Q ss_pred CCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEee
Q 002564 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380 (907)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 380 (907)
+...++.||++.|+++.|......+++|+.|.+++.||+....+.+++-.
T Consensus 252 ----r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-------------------------- 301 (459)
T KOG0288|consen 252 ----RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-------------------------- 301 (459)
T ss_pred ----hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc--------------------------
Confidence 77888899999999999998766799999999999999987555444211
Q ss_pred ecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccce
Q 002564 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 460 (907)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~ 460 (907)
.+.+..++.+ +..+++|..|+.|++||.+++....
T Consensus 302 -------------------------------------------~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~ 336 (459)
T KOG0288|consen 302 -------------------------------------------GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTR 336 (459)
T ss_pred -------------------------------------------cccccceEec--ceeeeecccccceEEEeccCCceee
Confidence 0223333333 5678889999999999999999888
Q ss_pred eeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-----cceeEEEEeeCCCEEEEEeC
Q 002564 461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-----CSLVKIVYHRVNGLLATVAD 535 (907)
Q Consensus 461 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~i~~~~~s~~~~~la~~~~ 535 (907)
..+ .+ +.|+++..++++..+.+++.|.++.+.|+.+......+... +..+.+.|||++.|+|+|+.
T Consensus 337 sv~--------~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~ 407 (459)
T KOG0288|consen 337 SVP--------LG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA 407 (459)
T ss_pred Eee--------cC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccC
Confidence 874 34 59999999999999999999999999999999888877543 66899999999999999999
Q ss_pred CCeEEEEEcccceeEEEeecCCC--CeeeEEECCCCcEEEEEeCCCcEEEE
Q 002564 536 DLVIRLFDVVALRMVRKFEGHTD--RITDFCFSEDGKWLLSSGMDGSLRIW 584 (907)
Q Consensus 536 dg~I~v~d~~~~~~~~~~~~h~~--~I~~l~fspdg~~l~s~s~Dg~I~vw 584 (907)
||.|+||++.++++...+..... .|++++|+|.|.+|++++.++.+.+|
T Consensus 408 dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 408 DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 99999999999999998886554 49999999999999999999999999
No 80
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=5.9e-27 Score=215.70 Aligned_cols=280 Identities=14% Similarity=0.168 Sum_probs=239.3
Q ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEe-ecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEE
Q 002564 175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWN 253 (907)
Q Consensus 175 ~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~-~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd 253 (907)
+.+.+|.+.|.+++|+.+|..|++|+.|+++.+|++..++...... .+|.+.|-.++|.|....++++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 4567899999999999999999999999999999999876554443 334678999999998888999999999999999
Q ss_pred CCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEe
Q 002564 254 LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG 333 (907)
Q Consensus 254 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~ 333 (907)
.+.+++...+. ..+.=.-+.|+|+|.+++.++.|..|...|.... +.... ......+..++|+-++.+++...
T Consensus 94 ~r~~k~~~~i~--~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~----~~~~~-~~~~~e~ne~~w~~~nd~Fflt~ 166 (313)
T KOG1407|consen 94 IRSGKCTARIE--TKGENINITWSPDGEYIAVGNKDDRITFIDARTY----KIVNE-EQFKFEVNEISWNNSNDLFFLTN 166 (313)
T ss_pred eccCcEEEEee--ccCcceEEEEcCCCCEEEEecCcccEEEEEeccc----ceeeh-hcccceeeeeeecCCCCEEEEec
Confidence 99999999887 4444467889999999999999999999987654 22222 23455678899998888888888
Q ss_pred CCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceec
Q 002564 334 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG 413 (907)
Q Consensus 334 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~ 413 (907)
..|.|.|.....-+....+
T Consensus 167 GlG~v~ILsypsLkpv~si------------------------------------------------------------- 185 (313)
T KOG1407|consen 167 GLGCVEILSYPSLKPVQSI------------------------------------------------------------- 185 (313)
T ss_pred CCceEEEEecccccccccc-------------------------------------------------------------
Confidence 8899999887543333322
Q ss_pred ceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe
Q 002564 414 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG 493 (907)
Q Consensus 414 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~ 493 (907)
..|+....|+.|+|+|+++++|+.|..+.+||++.-.+.+.+. -+.-+|..+.|+.+|++|++++
T Consensus 186 -------~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is--------RldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 186 -------KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS--------RLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred -------ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec--------cccCceEEEEeccCcceeeccC
Confidence 2466788999999999999999999999999999998888885 7889999999999999999999
Q ss_pred cCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCC
Q 002564 494 YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL 537 (907)
Q Consensus 494 ~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg 537 (907)
.|..|-|=+.++|..+..+++.++...++|+|...+||.+++|.
T Consensus 251 EDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred ccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCC
Confidence 99999999999999999999999999999999999999998763
No 81
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.5e-27 Score=248.17 Aligned_cols=269 Identities=18% Similarity=0.229 Sum_probs=234.2
Q ss_pred CEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEE
Q 002564 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231 (907)
Q Consensus 152 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~ 231 (907)
+.|++|.. ..|++|+..+++.......+...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+..+|...|-+++
T Consensus 189 n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~la 267 (484)
T KOG0305|consen 189 NVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLA 267 (484)
T ss_pred CeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEe
Confidence 56777754 46999999999877777666899999999999999999999999999999999999999986799999999
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCCceeeee-eecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEec
Q 002564 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSV-IREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR 310 (907)
Q Consensus 232 fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~ 310 (907)
|. +. .+.+|+.++.|..+|++..+.... +. +|...|..+.|++|+.++++|+.|+.+.|||.... .....+
T Consensus 268 W~--~~-~lssGsr~~~I~~~dvR~~~~~~~~~~-~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~----~p~~~~ 339 (484)
T KOG0305|consen 268 WN--SS-VLSSGSRDGKILNHDVRISQHVVSTLQ-GHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP----EPKFTF 339 (484)
T ss_pred cc--Cc-eEEEecCCCcEEEEEEecchhhhhhhh-cccceeeeeEECCCCCeeccCCCccceEeccCCCc----cccEEE
Confidence 98 33 799999999999999998876666 55 89999999999999999999999999999987433 456667
Q ss_pred cCCCCCCeEEEEec-CCCEEEEEe--CCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccc
Q 002564 311 SGHSAPPLCIRFYA-NGRHILSAG--QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER 387 (907)
Q Consensus 311 ~~h~~~v~~i~~~~-~g~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (907)
..|.+.|..++|+| ....||+|+ .|+.|++||+.++.....+..
T Consensus 340 ~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt--------------------------------- 386 (484)
T KOG0305|consen 340 TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT--------------------------------- 386 (484)
T ss_pred eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc---------------------------------
Confidence 79999999999999 667888875 699999999987665544322
Q ss_pred cccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEE--EeCCCcEEEEeCCCCccceeeecc
Q 002564 388 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL--GTAGGWIERFNLQSGISRGSYLDM 465 (907)
Q Consensus 388 ~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--g~~dg~i~i~d~~~~~~~~~~~~~ 465 (907)
...|.++.|++..+-+++ |+.++.|.+|+..+......+.
T Consensus 387 ------------------------------------gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~-- 428 (484)
T KOG0305|consen 387 ------------------------------------GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL-- 428 (484)
T ss_pred ------------------------------------CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec--
Confidence 278999999999977665 5677899999999988877775
Q ss_pred ccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 002564 466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 506 (907)
Q Consensus 466 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 506 (907)
+|...|..++++|||..+++|+.|.++++|++-..
T Consensus 429 ------gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 429 ------GHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ------CCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999999999999999999999999999998764
No 82
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=2.1e-27 Score=223.41 Aligned_cols=292 Identities=19% Similarity=0.320 Sum_probs=243.0
Q ss_pred ccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC--------------CCCcceeEeccCCCCCCeEEEEecCCCEEEE
Q 002564 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT--------------DGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331 (907)
Q Consensus 266 ~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~--------------~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s 331 (907)
.|.+++.+.+|++||.++++|+.|.+|++.|++.. .....+++++..|..+|+++.|+|....|++
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence 79999999999999999999999999999998621 1123567888999999999999999999999
Q ss_pred EeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeece
Q 002564 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411 (907)
Q Consensus 332 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~ 411 (907)
++.|++|++||+......+.+..
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~--------------------------------------------------------- 212 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKV--------------------------------------------------------- 212 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHH---------------------------------------------------------
Confidence 99999999999864332211100
Q ss_pred ecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEE
Q 002564 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS 491 (907)
Q Consensus 412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 491 (907)
+ ....++.++.|+|.|.++++|+.-..+++||+.+-+....-. ....|.+.|+++.+++.+++.++
T Consensus 213 -----~----qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan-----Pd~qht~ai~~V~Ys~t~~lYvT 278 (430)
T KOG0640|consen 213 -----F----QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN-----PDDQHTGAITQVRYSSTGSLYVT 278 (430)
T ss_pred -----h----hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC-----cccccccceeEEEecCCccEEEE
Confidence 0 112789999999999999999999999999999877655443 12579999999999999999999
Q ss_pred EecCCeEEEEECCCCceeeeeec---CcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCC--C---CeeeE
Q 002564 492 AGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT--D---RITDF 563 (907)
Q Consensus 492 ~~~dg~i~iwd~~~~~~~~~~~~---~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~--~---~I~~l 563 (907)
++.||.|++||--+++++.++.. +..|.+..|..+++++.+.+.|..+++|.+.+++++..+.|-. + --+..
T Consensus 279 aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqA 358 (430)
T KOG0640|consen 279 ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQA 358 (430)
T ss_pred eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhh
Confidence 99999999999999999988853 3789999999999999999999999999999999999987641 2 23455
Q ss_pred EECCCCcEEEEEeC-CCcEEEEEcCCCceeeEe--eeCCceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564 564 CFSEDGKWLLSSGM-DGSLRIWDVILARQIDAI--HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (907)
Q Consensus 564 ~fspdg~~l~s~s~-Dg~I~vwd~~~~~~~~~~--~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (907)
.|+....|++.-.+ .+.+.-||.+++..+..+ .+.+++..+.-||.+.-+.|++.|-+ +++|--+
T Consensus 359 vFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r-aRFWyrr 426 (430)
T KOG0640|consen 359 VFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR-ARFWYRR 426 (430)
T ss_pred hhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce-eeeeeec
Confidence 68888888876553 467999999998766544 44556999999999999999999984 9999744
No 83
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=5.6e-27 Score=256.34 Aligned_cols=281 Identities=22% Similarity=0.377 Sum_probs=242.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEE-EeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCce
Q 002564 180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT-FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR 258 (907)
Q Consensus 180 h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~-~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~ 258 (907)
+...+.+..|. .+++++++.+++|++|+..++..+.. +.+| .+.|.+++|..-+. ++++|+.|.++++||..+|.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH-~g~V~~l~~~~~~~-~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGH-FGGVWGLAFPSGGD-KLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCC-CCCceeEEEecCCC-EEEEEecCCcEEeEecCCCc
Confidence 56778888888 56899999999999999999999888 6655 89999999987444 99999999999999999999
Q ss_pred eeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCE
Q 002564 259 LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF 338 (907)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i 338 (907)
+...+. +|.+.|.++...+ ..+++|+.|.+|++|+++.+ ..+..+.+|.++|.++..+ +.++++|+.|++|
T Consensus 283 C~~~l~-gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~----~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v 353 (537)
T KOG0274|consen 283 CTHSLQ-GHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNG----ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTV 353 (537)
T ss_pred EEEEec-CCCceEEEEEccC--ceEeeccCCceEEEEeccCc----ceEEEeccccccEEEEEec--CCEEEEEecCceE
Confidence 999999 9999999998754 47888999999999999854 6788888899999999997 6789999999888
Q ss_pred EEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeee
Q 002564 339 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 418 (907)
Q Consensus 339 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~ 418 (907)
++|++.+.+..
T Consensus 354 ~VW~~~~~~cl--------------------------------------------------------------------- 364 (537)
T KOG0274|consen 354 KVWDPRTGKCL--------------------------------------------------------------------- 364 (537)
T ss_pred EEEEhhhceee---------------------------------------------------------------------
Confidence 88887543322
Q ss_pred cCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeE
Q 002564 419 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI 498 (907)
Q Consensus 419 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 498 (907)
..+ .+|...|.++.+.+. ..+++|+.|++|
T Consensus 365 -----------------------------------------~sl--------~gH~~~V~sl~~~~~-~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 365 -----------------------------------------KSL--------SGHTGRVYSLIVDSE-NRLLSGSLDTTI 394 (537)
T ss_pred -----------------------------------------eee--------cCCcceEEEEEecCc-ceEEeeeeccce
Confidence 222 389999999988876 799999999999
Q ss_pred EEEECCCC-ceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeec-CCCCeeeEEECCCCcEEEEEe
Q 002564 499 KVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG-HTDRITDFCFSEDGKWLLSSG 576 (907)
Q Consensus 499 ~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~-h~~~I~~l~fspdg~~l~s~s 576 (907)
++||+.+. +++..+.++..+. -.....+++|++++.|++|++||..++++++.+.+ |.+.|+.+++. ...+++++
T Consensus 395 kvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~ 471 (537)
T KOG0274|consen 395 KVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSS 471 (537)
T ss_pred EeecCCchhhhhhhhcCCcccc-cccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEe
Confidence 99999999 8999998885544 33444688999999999999999999999999999 77899988886 45788899
Q ss_pred CCCcEEEEEcCCCceeeEe
Q 002564 577 MDGSLRIWDVILARQIDAI 595 (907)
Q Consensus 577 ~Dg~I~vwd~~~~~~~~~~ 595 (907)
.||++++||+++++++..+
T Consensus 472 ~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 472 DDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cCCeeEEEecccCchhhhh
Confidence 9999999999999988766
No 84
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=256.56 Aligned_cols=300 Identities=16% Similarity=0.248 Sum_probs=219.5
Q ss_pred CCeEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecC----------CCCEEEEEEec---C
Q 002564 170 TKKKLYEFK-GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM----------RGAVTALAFSS---D 235 (907)
Q Consensus 170 ~~~~~~~~~-~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~----------~~~v~~l~fs~---d 235 (907)
.-...+.+. .|.+.|++|.||+||+|||+|+.||.|+||.+...+.. ...... .+.+..+.-++ .
T Consensus 255 al~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~-~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~ 333 (712)
T KOG0283|consen 255 ALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERM-RVAEGDSSCMYFEYNANSQIEPSTSSEEKIS 333 (712)
T ss_pred eeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchh-cccccccchhhhhhhhccccCcccccccccc
Confidence 334455666 89999999999999999999999999999998864431 111110 01111111111 0
Q ss_pred CC-CEEEEEeCCCcEEEEECC----CceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEec
Q 002564 236 GQ-PLLASGASSGVISIWNLE----KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR 310 (907)
Q Consensus 236 g~-~~l~sg~~dg~I~iwd~~----~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~ 310 (907)
++ ...-.+..... .+.+.. ..+++..+. +|.+.|..+.|+.++ +|++++.|.+||+|++... .++..+
T Consensus 334 ~~~s~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~-GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~----~CL~~F 406 (712)
T KOG0283|consen 334 SRTSSSRKGSQSPC-VLLPLKAFVFSEKPFCEFK-GHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRK----ECLKVF 406 (712)
T ss_pred ccccccccccCCcc-ccCCCccccccccchhhhh-ccchhheecccccCC-eeEeccccccEEeecCCCc----ceeeEE
Confidence 01 01112222223 222222 236677777 999999999999876 8999999999999988755 567766
Q ss_pred cCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccc
Q 002564 311 SGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW 389 (907)
Q Consensus 311 ~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 389 (907)
.|...|+|++|+| |.+++++|+-||.+|+|++...+..
T Consensus 407 -~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv---------------------------------------- 445 (712)
T KOG0283|consen 407 -SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV---------------------------------------- 445 (712)
T ss_pred -ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE----------------------------------------
Confidence 7999999999999 8999999999999999998644322
Q ss_pred cceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeecccccc
Q 002564 390 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS 469 (907)
Q Consensus 390 ~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~ 469 (907)
.|. .-..-|++++++|+|++.++|+-+|.+++|+....+....+.-.....
T Consensus 446 --------------~W~---------------Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 446 --------------DWN---------------DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK 496 (712)
T ss_pred --------------eeh---------------hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence 221 112679999999999999999999999999998877665553222111
Q ss_pred ccCcCCcEEEEEEcCCC-CEEEEEecCCeEEEEECCCCceeeeeecC---cceeEEEEeeCCCEEEEEeCCCeEEEEEcc
Q 002564 470 NYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVV 545 (907)
Q Consensus 470 ~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~dg~I~v~d~~ 545 (907)
.......|+++.|.|.. ..+++.+.|..|||+|.....++..++.. ..-....|+.||++|+++++|..|++|+..
T Consensus 497 Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 497 KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 11222389999999754 45778888999999999888888888754 344567899999999999999999999986
Q ss_pred cc
Q 002564 546 AL 547 (907)
Q Consensus 546 ~~ 547 (907)
..
T Consensus 577 ~~ 578 (712)
T KOG0283|consen 577 SF 578 (712)
T ss_pred CC
Confidence 54
No 85
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=3.3e-27 Score=259.53 Aligned_cols=304 Identities=18% Similarity=0.241 Sum_probs=246.3
Q ss_pred ccccCeEEEEEecCCCEEEEEc--CCCcEEEEEccCCC--------CCcceeEeccCCCCCCeEEEEecCCCEEEEEeCC
Q 002564 266 AHDNAIISLHFFANEPVLMSAS--ADNSIKMWIFDTTD--------GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD 335 (907)
Q Consensus 266 ~h~~~V~~l~~~~~~~~l~s~~--~d~~i~vw~~~~~~--------~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~d 335 (907)
.+...|.++..+|++..++||| .|+.+++|+.+.-. ..+..+.....|.+.|.|++|+|||++|++|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3456789999999999999999 89999999765421 1245667778999999999999999999999999
Q ss_pred CCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecce
Q 002564 336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415 (907)
Q Consensus 336 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~ 415 (907)
+.|.+|..........+ -...+...+.-|..
T Consensus 91 ~~v~iW~~~~~~~~~~f-----------------------------------------gs~g~~~~vE~wk~-------- 121 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVF-----------------------------------------GSTGGAKNVESWKV-------- 121 (942)
T ss_pred ceEEEeeecccCCcccc-----------------------------------------cccccccccceeeE--------
Confidence 99999986531000000 00001111222221
Q ss_pred eeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecC
Q 002564 416 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH 495 (907)
Q Consensus 416 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 495 (907)
.....+|...|..++|+|++.++++++.|++|.+||..+......+. +|.+.|-++.|+|-|+++++-+.|
T Consensus 122 -~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~--------~H~s~VKGvs~DP~Gky~ASqsdD 192 (942)
T KOG0973|consen 122 -VSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR--------GHQSLVKGVSWDPIGKYFASQSDD 192 (942)
T ss_pred -EEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee--------cccccccceEECCccCeeeeecCC
Confidence 22233688999999999999999999999999999999997777775 999999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeecC-------cceeEEEEeeCCCEEEEEeC----CCeEEEEEcccceeEEEeecCCCCeeeEE
Q 002564 496 GDIKVWDFKGRDLKSRWEVG-------CSLVKIVYHRVNGLLATVAD----DLVIRLFDVVALRMVRKFEGHTDRITDFC 564 (907)
Q Consensus 496 g~i~iwd~~~~~~~~~~~~~-------~~i~~~~~s~~~~~la~~~~----dg~I~v~d~~~~~~~~~~~~h~~~I~~l~ 564 (907)
++|+||++.+....+.+..+ .-...+.|||||++|++... -..+.|.+-.+++.-..|-||.+++..+.
T Consensus 193 rtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvr 272 (942)
T KOG0973|consen 193 RTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVR 272 (942)
T ss_pred ceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEE
Confidence 99999998876666665433 56788999999999998743 34789999999999999999999999999
Q ss_pred ECCC-----Cc------------EEEEEeCCCcEEEEEcCCCceeeEeee--CCceEEEEECCCCceEEEEEecCCeEEE
Q 002564 565 FSED-----GK------------WLLSSGMDGSLRIWDVILARQIDAIHV--DVSITALSLSPNMDVLATAHVDQNGVYL 625 (907)
Q Consensus 565 fspd-----g~------------~l~s~s~Dg~I~vwd~~~~~~~~~~~~--~~~v~~l~~spdg~~lat~~~d~~~i~l 625 (907)
|+|. .+ .+|+||.|++|.||.....+++..+.. ...|..++|+|||-.|.+++.|| +|.+
T Consensus 273 FnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DG-tV~~ 351 (942)
T KOG0973|consen 273 FNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG-TVAL 351 (942)
T ss_pred eChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCC-eEEE
Confidence 9981 11 578999999999999988888766653 56799999999999999999999 6988
Q ss_pred eec
Q 002564 626 WVN 628 (907)
Q Consensus 626 W~~ 628 (907)
..+
T Consensus 352 i~F 354 (942)
T KOG0973|consen 352 IHF 354 (942)
T ss_pred EEc
Confidence 875
No 86
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=9.6e-27 Score=229.10 Aligned_cols=282 Identities=18% Similarity=0.330 Sum_probs=247.1
Q ss_pred CCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCc
Q 002564 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 304 (907)
Q Consensus 225 ~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~ 304 (907)
..++++...|... .+.+|+.|..+.++|..+++.+..+. ||...|+.+.|+|+...+++++.|..|++|......
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s--- 294 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILATLK-GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS--- 294 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhhcc-CcceEEEEEEeccchhheeecCCcceEEeecccccc---
Confidence 4688888888744 78999999999999999999999999 999999999999999999999999999999776553
Q ss_pred ceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeeccc
Q 002564 305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 384 (907)
Q Consensus 305 ~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (907)
.......|..+|+.+..+|.|.||++++.||+..+.|++++......+.
T Consensus 295 -~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~------------------------------ 343 (506)
T KOG0289|consen 295 -EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD------------------------------ 343 (506)
T ss_pred -CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee------------------------------
Confidence 3344568999999999999999999999999999999887765443211
Q ss_pred ccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeec
Q 002564 385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLD 464 (907)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 464 (907)
....-.+++.+|+|||..+.+|+.||.|++||+.++.....|+
T Consensus 344 ------------------------------------~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp- 386 (506)
T KOG0289|consen 344 ------------------------------------ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP- 386 (506)
T ss_pred ------------------------------------ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-
Confidence 0112568999999999999999999999999999999888886
Q ss_pred cccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC--cceeEEEEeeCCCEEEEEeCCCeEEEE
Q 002564 465 MSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLF 542 (907)
Q Consensus 465 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~dg~I~v~ 542 (907)
+|.++|..++|+.+|-+|++++.|+.|++||++..+...++... .++.++.|.+.|.+|+.++.|-.|+++
T Consensus 387 -------ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 387 -------GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred -------CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence 89999999999999999999999999999999998888888766 469999999999999999877666666
Q ss_pred Ec--ccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEc
Q 002564 543 DV--VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586 (907)
Q Consensus 543 d~--~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~ 586 (907)
+- .++.++..+..|.+..+.+.|..+.++++++|.|..++++.+
T Consensus 460 ~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 460 KKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 63 367888889999999999999999999999999999998864
No 87
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=3e-27 Score=237.25 Aligned_cols=302 Identities=18% Similarity=0.283 Sum_probs=236.1
Q ss_pred EEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc----eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcE
Q 002564 217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFFANEPVLMSASADNSI 292 (907)
Q Consensus 217 ~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i 292 (907)
..+.++ ...|.++++.|.|. .+++|+.|.+|++||+... +....+.......|.+++|++.+..|++.+.....
T Consensus 161 i~l~hg-tk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 161 IQLKHG-TKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred EeccCC-ceEEEEeeecCCCc-eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 344444 77899999999999 8999999999999998753 33444544566789999999999988888888899
Q ss_pred EEEEccCCC------CC--cceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhh
Q 002564 293 KMWIFDTTD------GD--PRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 363 (907)
Q Consensus 293 ~vw~~~~~~------~~--~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 363 (907)
+++|-+... +. .+-+..-.||...++|.+|+| +...+++++.||++|+|++...+.....-.
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik--------- 309 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK--------- 309 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe---------
Confidence 999765431 11 111233468999999999999 556899999999999999876542221100
Q ss_pred ccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe
Q 002564 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (907)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 443 (907)
-....+....+++++|+++|+.++.|+
T Consensus 310 -----------------------------------------------------~k~~~g~Rv~~tsC~~nrdg~~iAagc 336 (641)
T KOG0772|consen 310 -----------------------------------------------------TKPAGGKRVPVTSCAWNRDGKLIAAGC 336 (641)
T ss_pred -----------------------------------------------------eccCCCcccCceeeecCCCcchhhhcc
Confidence 011113346789999999999999999
Q ss_pred CCCcEEEEeCCCCccceeeeccccccccCcCC--cEEEEEEcCCCCEEEEEecCCeEEEEECCCCc-eeeee---ecCcc
Q 002564 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRD-LKSRW---EVGCS 517 (907)
Q Consensus 444 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~---~~~~~ 517 (907)
.||.|.+|+..+......+. ...+|.. .|++|.|+++|++|++-|.|+++++||+...+ ++... ....+
T Consensus 337 ~DGSIQ~W~~~~~~v~p~~~-----vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~ 411 (641)
T KOG0772|consen 337 LDGSIQIWDKGSRTVRPVMK-----VKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFP 411 (641)
T ss_pred cCCceeeeecCCcccccceE-----eeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCC
Confidence 99999999986544433332 1258887 89999999999999999999999999998653 33332 22367
Q ss_pred eeEEEEeeCCCEEEEEeC------CCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcC
Q 002564 518 LVKIVYHRVNGLLATVAD------DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 587 (907)
Q Consensus 518 i~~~~~s~~~~~la~~~~------dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~ 587 (907)
-+.++|||+.++|++|.. .|.+.+||..+...+.++.-....|..+.|+|.=+.|+.++.||+++||==+
T Consensus 412 ~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 412 GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred CCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECc
Confidence 788999999999999864 5789999999999999988778889999999988889999999999998433
No 88
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.7e-26 Score=252.51 Aligned_cols=283 Identities=19% Similarity=0.286 Sum_probs=248.1
Q ss_pred cccceEEEEeeCCEEEEEecCCcEEEEecCCCCccccceee-EecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCC
Q 002564 92 HSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGH-VKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST 170 (907)
Q Consensus 92 h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~ 170 (907)
|...+.+..+.++++++++.|++|++||..++.. +.. +.+|.+.+..+++...+ +++++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~----i~~~l~GH~g~V~~l~~~~~~--~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYL----ILTRLVGHFGGVWGLAFPSGG--DKLVSGSTDKTERVWDCST 280 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeecccceE----EEeeccCCCCCceeEEEecCC--CEEEEEecCCcEEeEecCC
Confidence 5677888888999999999999999999999988 666 88899999999988755 7899999999999999999
Q ss_pred CeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEE
Q 002564 171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS 250 (907)
Q Consensus 171 ~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~ 250 (907)
|++.+.+.+|.+.|.++...+. ++++|+.|.+|++|++.++..+..+.. |.++|.++... +. ++++|+.||+|+
T Consensus 281 g~C~~~l~gh~stv~~~~~~~~--~~~sgs~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~~~--~~-~lvsgs~d~~v~ 354 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTIDPF--LLVSGSRDNTVKVWDVTNGACLNLLRG-HTGPVNCVQLD--EP-LLVSGSYDGTVK 354 (537)
T ss_pred CcEEEEecCCCceEEEEEccCc--eEeeccCCceEEEEeccCcceEEEecc-ccccEEEEEec--CC-EEEEEecCceEE
Confidence 9999999999999999988654 688899999999999999999999987 58999999998 44 899999999999
Q ss_pred EEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEE
Q 002564 251 IWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL 330 (907)
Q Consensus 251 iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~ 330 (907)
+||+.++++++.+. +|...|+++.+.+. ..+++|+.|++|++||++... +++..+.+|..-+..+.+ .+++|+
T Consensus 355 VW~~~~~~cl~sl~-gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~h~~~v~~l~~--~~~~Lv 427 (537)
T KOG0274|consen 355 VWDPRTGKCLKSLS-GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR---KCIHTLQGHTSLVSSLLL--RDNFLV 427 (537)
T ss_pred EEEhhhceeeeeec-CCcceEEEEEecCc-ceEEeeeeccceEeecCCchh---hhhhhhcCCccccccccc--ccceeE
Confidence 99999999999999 89999999988765 799999999999999988763 578888899998877666 467999
Q ss_pred EEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeec
Q 002564 331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF 410 (907)
Q Consensus 331 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~ 410 (907)
+++.|++|++||..+++....+...
T Consensus 428 s~~aD~~Ik~WD~~~~~~~~~~~~~------------------------------------------------------- 452 (537)
T KOG0274|consen 428 SSSADGTIKLWDAEEGECLRTLEGR------------------------------------------------------- 452 (537)
T ss_pred eccccccEEEeecccCceeeeeccC-------------------------------------------------------
Confidence 9999999999999888776665321
Q ss_pred eecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceee
Q 002564 411 VLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (907)
Q Consensus 411 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~ 462 (907)
+...+.++++. ...+++++.+|.+.+||+.++.....+
T Consensus 453 ------------~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 453 ------------HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ------------CcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 22556666665 578899999999999999999888766
No 89
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.6e-27 Score=233.54 Aligned_cols=296 Identities=19% Similarity=0.279 Sum_probs=238.9
Q ss_pred EecC-CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEe
Q 002564 199 GCSD-GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFF 277 (907)
Q Consensus 199 g~~d-g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~ 277 (907)
++.| ..+.+||+++|....++.+.....-.++..- .+.+++++-.....|.+|.+.......... --.++|.+++-+
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~-v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYI-VLPGPVHALASS 90 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhc-ccccceeeeecC
Confidence 3444 5699999999999999987522222333222 224344444566789999987765554222 467889999999
Q ss_pred cCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhh
Q 002564 278 ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357 (907)
Q Consensus 278 ~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 357 (907)
|+|.+|+.|+..|.+++|.+.++ .++..+.+|..+|+++.|+.||.+|++||.||.|.+|++..-
T Consensus 91 n~G~~l~ag~i~g~lYlWelssG----~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l----------- 155 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSSG----ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL----------- 155 (476)
T ss_pred CCceEEEeecccCcEEEEEeccc----cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee-----------
Confidence 99999999989999999988876 678888999999999999999999999999999999986421
Q ss_pred hHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCC
Q 002564 358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN 437 (907)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 437 (907)
T Consensus 156 -------------------------------------------------------------------------------- 155 (476)
T KOG0646|consen 156 -------------------------------------------------------------------------------- 155 (476)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCC--CCEEEEEecCCeEEEEECCCCceeeeeecC
Q 002564 438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAGYHGDIKVWDFKGRDLKSRWEVG 515 (907)
Q Consensus 438 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 515 (907)
+....++ +..+...+ ..|.-+|+.+.+.+. +.+++|++.|.++++||+..+.++.++..+
T Consensus 156 --v~a~~~~--------~~~p~~~f--------~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp 217 (476)
T KOG0646|consen 156 --VSADNDH--------SVKPLHIF--------SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP 217 (476)
T ss_pred --cccccCC--------Cccceeee--------ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC
Confidence 1111111 11222223 389999999998875 478999999999999999999999999999
Q ss_pred cceeEEEEeeCCCEEEEEeCCCeEEEEEcccce----------------eEEEeecCCC--CeeeEEECCCCcEEEEEeC
Q 002564 516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALR----------------MVRKFEGHTD--RITDFCFSEDGKWLLSSGM 577 (907)
Q Consensus 516 ~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~----------------~~~~~~~h~~--~I~~l~fspdg~~l~s~s~ 577 (907)
..+.+++..|-+..+.+|+.+|.|.+.++.+.. .+..+.||.+ .|++++.+-||..|++|+.
T Consensus 218 ~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~ 297 (476)
T KOG0646|consen 218 SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE 297 (476)
T ss_pred CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC
Confidence 999999999999999999999999998876432 3566889998 9999999999999999999
Q ss_pred CCcEEEEEcCCCceeeEee-eCCceEEEEECCC
Q 002564 578 DGSLRIWDVILARQIDAIH-VDVSITALSLSPN 609 (907)
Q Consensus 578 Dg~I~vwd~~~~~~~~~~~-~~~~v~~l~~spd 609 (907)
||.|+|||+.+.++++++. ..++|+.+.+.|=
T Consensus 298 dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 298 DGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred CCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 9999999999999999998 6778999999663
No 90
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-25 Score=213.39 Aligned_cols=294 Identities=13% Similarity=0.203 Sum_probs=236.8
Q ss_pred CeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeC--CCc
Q 002564 171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS--SGV 248 (907)
Q Consensus 171 ~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~--dg~ 248 (907)
-++.+.|......|+++.|+++|.++++++.|..++|||..+++.+.++... +-.+..++|..... .++.++. |.+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk-kyG~~~~~Fth~~~-~~i~sStk~d~t 81 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK-KYGVDLACFTHHSN-TVIHSSTKEDDT 81 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc-cccccEEEEecCCc-eEEEccCCCCCc
Confidence 3445556667889999999999999999999999999999999999999876 55788899987766 4555554 889
Q ss_pred EEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCE
Q 002564 249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH 328 (907)
Q Consensus 249 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~ 328 (907)
|+..++.+.+.++-+. ||...|++++.+|-+..+++++.|++|++||++.......+ +...-..++|.|+|-+
T Consensus 82 IryLsl~dNkylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l------~~~~~pi~AfDp~GLi 154 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL------NLSGRPIAAFDPEGLI 154 (311)
T ss_pred eEEEEeecCceEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE------ecCCCcceeECCCCcE
Confidence 9999999999999999 99999999999999999999999999999999866433221 2334456899999999
Q ss_pred EEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEee
Q 002564 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408 (907)
Q Consensus 329 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~ 408 (907)
++++.....|++||++.-.. .|...+
T Consensus 155 fA~~~~~~~IkLyD~Rs~dk-------------------------gPF~tf----------------------------- 180 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDK-------------------------GPFTTF----------------------------- 180 (311)
T ss_pred EEEecCCCeEEEEEecccCC-------------------------CCceeE-----------------------------
Confidence 99988888999999875311 111111
Q ss_pred eceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCC-cEEEEEEcCCCC
Q 002564 409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG-EVVGVACDSTNT 487 (907)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~ 487 (907)
..........+.+.|||||+++++++..+.+++.|.-+|.....+.... ..+ --...+|+||++
T Consensus 181 ---------~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~------~~~~~~~~a~ftPds~ 245 (311)
T KOG1446|consen 181 ---------SITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP------NAGNLPLSATFTPDSK 245 (311)
T ss_pred ---------ccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc------CCCCcceeEEECCCCc
Confidence 1111233678899999999999999999999999999999888886211 111 125778999999
Q ss_pred EEEEEecCCeEEEEECCCCceeeeeec--CcceeEEEEeeCCCEEEEEeCCCeEEEEEc
Q 002564 488 LMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYHRVNGLLATVADDLVIRLFDV 544 (907)
Q Consensus 488 ~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~i~~~~~s~~~~~la~~~~dg~I~v~d~ 544 (907)
++++|+.||+|.+|+++++..+..+.. ..++.++.|+|.-.++++++ ..+.+|=.
T Consensus 246 Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p 302 (311)
T KOG1446|consen 246 FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLP 302 (311)
T ss_pred EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEec
Confidence 999999999999999999999998877 38899999999777777765 45666643
No 91
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.7e-28 Score=247.68 Aligned_cols=352 Identities=17% Similarity=0.253 Sum_probs=273.6
Q ss_pred eCCEEEEEecCCcEEEEecCCCCcc--ccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCC--eEEEEE
Q 002564 102 FGEHILSIDIDGNMFIWAFKGIEEN--LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK--KKLYEF 177 (907)
Q Consensus 102 ~g~~l~s~~~dg~v~vWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~ 177 (907)
.+++|+|+|.||.|++|++....-. ...+.+++.|..++..++..-.+ +.++++|.|-+|++|+...+ -+..++
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~--~tlIS~SsDtTVK~W~~~~~~~~c~sti 113 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG--KTLISASSDTTVKVWNAHKDNTFCMSTI 113 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC--CceEEecCCceEEEeecccCcchhHhhh
Confidence 5788999999999999998654331 22366778888888888877777 78999999999999999877 577889
Q ss_pred cCCCCCEEEEEE-cCCCCEEEEEecCCeEEEEEccCC--ceEEEEe--------ecCCCCEEEEEEecCCCCEEEEEeCC
Q 002564 178 KGWGSSISSCVS-SPALDVVAVGCSDGKIHVHNVRYD--EELVTFT--------HSMRGAVTALAFSSDGQPLLASGASS 246 (907)
Q Consensus 178 ~~h~~~I~~l~~-sp~~~~la~g~~dg~I~iwd~~~~--~~~~~~~--------~~~~~~v~~l~fs~dg~~~l~sg~~d 246 (907)
..|...|.|+++ .++..++|+|+-|+.|.+||+.++ ..+.++. .++..+|++++.++.|. ++++|+..
T Consensus 114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGgte 192 (735)
T KOG0308|consen 114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGGTE 192 (735)
T ss_pred hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-EEEecCcc
Confidence 999999999999 888899999999999999999987 3333332 24577999999999997 99999999
Q ss_pred CcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCC
Q 002564 247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 326 (907)
Q Consensus 247 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g 326 (907)
+.|++||.++++.+..++ +|...|..+..++||..+++++.||+|++||+... +++.++..|...|+++..+|+-
T Consensus 193 k~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ----rCl~T~~vH~e~VWaL~~~~sf 267 (735)
T KOG0308|consen 193 KDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ----RCLATYIVHKEGVWALQSSPSF 267 (735)
T ss_pred cceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeecccc----ceeeeEEeccCceEEEeeCCCc
Confidence 999999999999999999 99999999999999999999999999999998755 7888889999999999999999
Q ss_pred CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEE
Q 002564 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 406 (907)
Q Consensus 327 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~ 406 (907)
.++++|+.||.|..-|+++......+-
T Consensus 268 ~~vYsG~rd~~i~~Tdl~n~~~~tlic----------------------------------------------------- 294 (735)
T KOG0308|consen 268 THVYSGGRDGNIYRTDLRNPAKSTLIC----------------------------------------------------- 294 (735)
T ss_pred ceEEecCCCCcEEecccCCchhheEee-----------------------------------------------------
Confidence 999999999999998887642211110
Q ss_pred eeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC
Q 002564 407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486 (907)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 486 (907)
....++..+..+...+-+-+++.|+.|..|...-.. .+++.+
T Consensus 295 ---------------k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~-----------------------~l~~s~ 336 (735)
T KOG0308|consen 295 ---------------KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI-----------------------ALSVSG 336 (735)
T ss_pred ---------------cCCCchhhhhhccccCCceeeeccccceecCCcccc-----------------------ccccCC
Confidence 011444555555444555778888889888764321 222233
Q ss_pred CEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee
Q 002564 487 TLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE 554 (907)
Q Consensus 487 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~ 554 (907)
++.. -+.|......+... .+-..+.++.+|...++-.|.+.+++-...|.+.+||+-....+..|.
T Consensus 337 ~~~~-~~T~~~~~~~~~~~-tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 337 DLDF-FSTDSNNHSCDLTN-TPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred CCCc-ccccCCCccccccC-CCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 2222 12222223333211 233445556677777888889999999999999999998776666554
No 92
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.95 E-value=6.7e-26 Score=232.38 Aligned_cols=537 Identities=15% Similarity=0.212 Sum_probs=307.3
Q ss_pred eeEEEEcccccceEEEEe---eCCEEEEEecCCcEEEEecCCCCccccceeeEe-cCC-CcccEEEEcCCCCCCEEEEEe
Q 002564 84 HQVATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVK-LDD-KFTPTCIMHPDTYLNKVIVGS 158 (907)
Q Consensus 84 ~~~~~~~~h~~~V~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~-~~~-~~~~~~~~~p~~~~~~l~~~s 158 (907)
+.+..+.+|...|+.+.| +...|++|+.|..|+||.+..+-......-.+. .+. ..+-+.-|||... +.++ .+
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaD-gil~-s~ 147 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTAD-GILA-SG 147 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcC-ceEE-ec
Confidence 346668999999999985 578899999999999999984432211111122 223 3334445999873 4444 44
Q ss_pred cCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccC-CceEEEEeecCCCCEEEEEEecCCC
Q 002564 159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQ 237 (907)
Q Consensus 159 ~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~-~~~~~~~~~~~~~~v~~l~fs~dg~ 237 (907)
..|++++||+.+++.+..+.+|...|.++.|+.||.+|++.+.|..|+|||.+. ++.++....|....=..+.|..+-.
T Consensus 148 a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~ 227 (1012)
T KOG1445|consen 148 AHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWE 227 (1012)
T ss_pred cCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchh
Confidence 778999999999999999999999999999999999999999999999999985 4566666555333445677776655
Q ss_pred CEEEEEeC---CCcEEEEECCCc-eeeeeeecccccCeEEEEEecCCCEEEEEc-CCCcEEEEEccCCCCC---------
Q 002564 238 PLLASGAS---SGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGD--------- 303 (907)
Q Consensus 238 ~~l~sg~~---dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~--------- 303 (907)
.++-+|-. -..|++||.... ..++++.......|.---|.||.++|+-++ .++.+.++.+......
T Consensus 228 rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tl 307 (1012)
T KOG1445|consen 228 RLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTL 307 (1012)
T ss_pred hhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcc
Confidence 45555542 357899998754 445555433455566666788887666555 3556665543221000
Q ss_pred ----------------------ccee----------------------------------------EeccCCCCCCeEEE
Q 002564 304 ----------------------PRLL----------------------------------------RFRSGHSAPPLCIR 321 (907)
Q Consensus 304 ----------------------~~~~----------------------------------------~~~~~h~~~v~~i~ 321 (907)
.+.+ ..+.|....|..+.
T Consensus 308 e~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvS 387 (1012)
T KOG1445|consen 308 EEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVS 387 (1012)
T ss_pred hhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccccccc
Confidence 0000 00001011111111
Q ss_pred Eec------------------------------------------------C--CCEEEEEeCCCCEEEEEceeccc---
Q 002564 322 FYA------------------------------------------------N--GRHILSAGQDRAFRLFSVIQDQQ--- 348 (907)
Q Consensus 322 ~~~------------------------------------------------~--g~~l~s~~~dg~i~iwd~~~~~~--- 348 (907)
..| | .+.-+. ....++-.+.+..+.
T Consensus 388 l~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~--~~~e~r~l~~~~~E~~~g 465 (1012)
T KOG1445|consen 388 LAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVP--KKEEVRELDYRPYEKENG 465 (1012)
T ss_pred cCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcC--cchhhhhhcccccccccC
Confidence 110 0 000000 001111111111000
Q ss_pred ------ceeechhhhhH--HHh---hccchhhh----------cccCceeEeeecccccccc-------cceEEEeeC--
Q 002564 349 ------SRELSQRHVAK--RAR---KLKMKEEE----------LKLKPVIAFDCAEIRERDW-------CNVVTCHMD-- 398 (907)
Q Consensus 349 ------~~~~~~~~~~~--~~~---~~~~~~~~----------~~~~~i~~~~~~~~~~~~~-------~~~~~~~~~-- 398 (907)
.....++.... .+. ....+... ..+.|...-.....+.... +.+.....-
T Consensus 466 ~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~ 545 (1012)
T KOG1445|consen 466 VHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRP 545 (1012)
T ss_pred ccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccccccccc
Confidence 00000000000 000 00000000 0000000000000000000 000000000
Q ss_pred ----CceEEEEEeeeceeccee-----ee-cCCCCCCceEEEEEcCCCCEEEE--EeCCCcEEEEeCCCCccce-eeecc
Q 002564 399 ----TAQAYVWRLQNFVLGEHI-----LR-PCPENPTAVKACTISACGNFAVL--GTAGGWIERFNLQSGISRG-SYLDM 465 (907)
Q Consensus 399 ----~~~v~~w~~~~~~~~~~~-----~~-~~~~~~~~v~~~~~s~~g~~l~~--g~~dg~i~i~d~~~~~~~~-~~~~~ 465 (907)
-+.+.-+.-..+..+... ++ ....-++... -|..+..++++ .+..|.|.||++...-.+. ...
T Consensus 546 ~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsn--Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~-- 621 (1012)
T KOG1445|consen 546 KSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESN--GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVM-- 621 (1012)
T ss_pred cceeeccchheeeccCccccchhhhhhhhcccccCCCccC--ceeeccceEEEEecCCCceEEEEEcCCCCCCCcccc--
Confidence 000101111011110000 00 0000011111 22333445554 4567899999987532221 110
Q ss_pred ccccccCcCCcEEEEEEcC-CCCEEEEEecCCeEEEEECCCCce-------eeeeec-CcceeEEEEee-CCCEEEEEeC
Q 002564 466 SERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDL-------KSRWEV-GCSLVKIVYHR-VNGLLATVAD 535 (907)
Q Consensus 466 ~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~-~~~i~~~~~s~-~~~~la~~~~ 535 (907)
...-....|+.+.|+| |...|++++.||.|++|.+..+.+ ...+.. ...|+++.||| -.+.|++++.
T Consensus 622 ---p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy 698 (1012)
T KOG1445|consen 622 ---PGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY 698 (1012)
T ss_pred ---cccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhc
Confidence 0013456799999999 568899999999999999876532 233333 37899999999 4678999999
Q ss_pred CCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCce-eeEeee--CCceEEEEECCCCce
Q 002564 536 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ-IDAIHV--DVSITALSLSPNMDV 612 (907)
Q Consensus 536 dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~--~~~v~~l~~spdg~~ 612 (907)
|-+|++||+.+++....+.||++.|.+++|||||+.+++.+.||+|+||+-.++.. +..-.+ ...-..+.|.-||++
T Consensus 699 d~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~ 778 (1012)
T KOG1445|consen 699 DSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRI 778 (1012)
T ss_pred cceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcE
Confidence 99999999999999999999999999999999999999999999999999877643 322222 122456788889999
Q ss_pred EEEEEecC---CeEEEeecccc
Q 002564 613 LATAHVDQ---NGVYLWVNRCM 631 (907)
Q Consensus 613 lat~~~d~---~~i~lW~~~~~ 631 (907)
++..+-|. +.|.+|+.+.+
T Consensus 779 viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 779 VIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred EEEecccccchhhhhhhhhhhc
Confidence 99988775 34777775443
No 93
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=5.4e-28 Score=232.51 Aligned_cols=292 Identities=15% Similarity=0.230 Sum_probs=246.5
Q ss_pred EEEEcccccceEEEEee--C-CEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCc
Q 002564 86 VATWSRHSAKVNLLLLF--G-EHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGS 162 (907)
Q Consensus 86 ~~~~~~h~~~V~~l~~~--g-~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~ 162 (907)
+..+.||...|.+++-. . ..++||+.||.|++||+.+.++ ..++..|.+++...++... .+++++.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~----~~~f~AH~G~V~Gi~v~~~----~~~tvgdDKt 130 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC----IRTFKAHEGLVRGICVTQT----SFFTVGDDKT 130 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh----hheeecccCceeeEEeccc----ceEEecCCcc
Confidence 55689999999999953 3 5699999999999999999888 8889999999988888873 4888889999
Q ss_pred EEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEE
Q 002564 163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLAS 242 (907)
Q Consensus 163 i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~s 242 (907)
|+.|-+.. .+++++.+ .+.+..+.-+..++.+|+++. .|.|||..-..++..+.-+ ...|.++.|+|....+|++
T Consensus 131 vK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG-~Dti~svkfNpvETsILas 205 (433)
T KOG0268|consen 131 VKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWG-ADSISSVKFNPVETSILAS 205 (433)
T ss_pred eeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecC-CCceeEEecCCCcchheee
Confidence 99999754 57888877 677788888888888999886 5999999999999999876 5789999999998889999
Q ss_pred EeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEE
Q 002564 243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF 322 (907)
Q Consensus 243 g~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 322 (907)
|+.|+.|.+||++++.++..+. -.-.-+.++|+|.+-.+++|+.|..++.+|+.... +.+....+|...|.++.|
T Consensus 206 ~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~---~p~~v~~dhvsAV~dVdf 280 (433)
T KOG0268|consen 206 CASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS---RPLNVHKDHVSAVMDVDF 280 (433)
T ss_pred eccCCceEEEecccCCccceee--eeccccceecCccccceeeccccccceehhhhhhc---ccchhhcccceeEEEecc
Confidence 9999999999999998888776 44556899999988889999999999999887654 456777899999999999
Q ss_pred ecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceE
Q 002564 323 YANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA 402 (907)
Q Consensus 323 ~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v 402 (907)
+|.|+-+++|+.|.+|++|.+..+........
T Consensus 281 sptG~EfvsgsyDksIRIf~~~~~~SRdiYht------------------------------------------------ 312 (433)
T KOG0268|consen 281 SPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT------------------------------------------------ 312 (433)
T ss_pred CCCcchhccccccceEEEeecCCCcchhhhhH------------------------------------------------
Confidence 99999999999999999999876543222111
Q ss_pred EEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceee
Q 002564 403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (907)
Q Consensus 403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~ 462 (907)
. ....|.|+.||.|.+|+++|+.|+.|++|.....+.+..+
T Consensus 313 -------k------------RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 313 -------K------------RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred -------h------------hhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 0 0167899999999999999999999999998765554433
No 94
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.2e-27 Score=250.99 Aligned_cols=299 Identities=17% Similarity=0.259 Sum_probs=219.6
Q ss_pred CCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccc
Q 002564 312 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 391 (907)
Q Consensus 312 ~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 391 (907)
.|.+.|+++.|++||+|||+||.||.|+||.+....... ...+........+.... ...|...-. . .... ...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~-~~~~~~~~~~~~~~~~s---~~~p~~s~~-~-~~~~-~~s 337 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMR-VAEGDSSCMYFEYNANS---QIEPSTSSE-E-KISS-RTS 337 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhc-ccccccchhhhhhhhcc---ccCcccccc-c-cccc-ccc
Confidence 899999999999999999999999999999998743311 10000000000000000 000000000 0 0000 000
Q ss_pred eEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeecccccccc
Q 002564 392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY 471 (907)
Q Consensus 392 ~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 471 (907)
....+..... ..............+....+|...|-.+.||.+ ++|++++.|.+|++|++....++..|
T Consensus 338 ~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F--------- 406 (712)
T KOG0283|consen 338 SSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF--------- 406 (712)
T ss_pred ccccccCCcc-ccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE---------
Confidence 0000000111 122222333335556666789999999999976 68999999999999999999999998
Q ss_pred CcCCcEEEEEEcC-CCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeE
Q 002564 472 AHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV 550 (907)
Q Consensus 472 ~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~ 550 (907)
.|...|+|++|+| |.+++++|+.||.+|+|++...+...-.+.+.-|++++|.|||+..++|+-+|.+++|++...+.+
T Consensus 407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence 6999999999999 668999999999999999999999988888999999999999999999999999999999988776
Q ss_pred EEeec--C------CCCeeeEEECCCC-cEEEEEeCCCcEEEEEcCCCceeeEeeeCCc---eEEEEECCCCceEEEEEe
Q 002564 551 RKFEG--H------TDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQIDAIHVDVS---ITALSLSPNMDVLATAHV 618 (907)
Q Consensus 551 ~~~~~--h------~~~I~~l~fspdg-~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~---v~~l~~spdg~~lat~~~ 618 (907)
..+.- | ...||.+.|.|.. .-+++.+.|..|||+|..+-.++..|++... -....|+.||++|++++.
T Consensus 487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se 566 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE 566 (712)
T ss_pred EeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec
Confidence 55431 1 1379999999744 3466677999999999999999988886443 567889999999999998
Q ss_pred cCCeEEEeecc
Q 002564 619 DQNGVYLWVNR 629 (907)
Q Consensus 619 d~~~i~lW~~~ 629 (907)
|. .||+|++.
T Consensus 567 Ds-~VYiW~~~ 576 (712)
T KOG0283|consen 567 DS-WVYIWKND 576 (712)
T ss_pred Cc-eEEEEeCC
Confidence 88 69999974
No 95
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.8e-26 Score=214.89 Aligned_cols=278 Identities=19% Similarity=0.312 Sum_probs=222.8
Q ss_pred EEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCC-ceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEE
Q 002564 217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295 (907)
Q Consensus 217 ~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw 295 (907)
..+.....+.|.+++|||....++++|+.||+|++|+++. |.........|.++|.+++|+.||..+++|+.|+.+++|
T Consensus 20 ~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 20 YEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred eecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence 3444555789999999996665888999999999999987 455555555799999999999999999999999999999
Q ss_pred EccCCCCCcceeEeccCCCCCCeEEEEecCCC--EEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhccc
Q 002564 296 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR--HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 373 (907)
Q Consensus 296 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (907)
|+.++. ......|.++|..+.|-+... .|++|+.|.+|+.||.+.......+..
T Consensus 100 DL~S~Q-----~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L------------------- 155 (347)
T KOG0647|consen 100 DLASGQ-----VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL------------------- 155 (347)
T ss_pred EccCCC-----eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-------------------
Confidence 998762 445568999999999998554 899999999999999987665544322
Q ss_pred CceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 002564 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL 453 (907)
Q Consensus 374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~ 453 (907)
+..+.++. --...+++++.+..|.+|++
T Consensus 156 --------------------------------------------------PeRvYa~D--v~~pm~vVata~r~i~vynL 183 (347)
T KOG0647|consen 156 --------------------------------------------------PERVYAAD--VLYPMAVVATAERHIAVYNL 183 (347)
T ss_pred --------------------------------------------------cceeeehh--ccCceeEEEecCCcEEEEEc
Confidence 12333332 23457899999999999999
Q ss_pred CCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCce--eeeeecC----------cceeEE
Q 002564 454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL--KSRWEVG----------CSLVKI 521 (907)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~----------~~i~~~ 521 (907)
+.+....... ...-+-.++++++.+++...+.|+-+|.+.+..+..+.. -.+++.+ ..|+++
T Consensus 184 ~n~~te~k~~------~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi 257 (347)
T KOG0647|consen 184 ENPPTEFKRI------ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI 257 (347)
T ss_pred CCCcchhhhh------cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence 8765443221 123456789999999988889999999999999987632 2233332 357889
Q ss_pred EEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEe
Q 002564 522 VYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG 576 (907)
Q Consensus 522 ~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s 576 (907)
+|+|.-..|++++.||+..+||-+....+...+.|..+|++.+|+.+|.++|.+.
T Consensus 258 ~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 258 AFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred EeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 9999999999999999999999998888888899999999999999999988653
No 96
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.9e-26 Score=214.04 Aligned_cols=264 Identities=22% Similarity=0.380 Sum_probs=209.8
Q ss_pred EEEEecCCeEEEEEccCC------------ceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeee
Q 002564 196 VAVGCSDGKIHVHNVRYD------------EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI 263 (907)
Q Consensus 196 la~g~~dg~I~iwd~~~~------------~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~ 263 (907)
+++|+....|.=+++.-. .++..+.. |.++|++++.+ +. ++|+|+.|-+|+|||+.+...+..+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~a-H~~sitavAVs--~~-~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSA-HAGSITALAVS--GP-YVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccc-cccceeEEEec--ce-eEeccCCCCcEEEEeccchhhhcce
Confidence 556666555555554311 12333334 48899999985 66 9999999999999999999999998
Q ss_pred ecccccCeEEEEEecCCC--EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEE
Q 002564 264 REAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 341 (907)
Q Consensus 264 ~~~h~~~V~~l~~~~~~~--~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iw 341 (907)
. .|.+.|+++.|.+.-. .|++|+.||.|.+|+.. .+.++.++.+|.+.|+.++.+|.|++-++.+.|+.++.|
T Consensus 80 l-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~----~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~W 154 (362)
T KOG0294|consen 80 L-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG----SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTW 154 (362)
T ss_pred e-ccccceEEEEecCCcchhheeeecCCCcEEEEEcC----CeEEeeeecccccccceeEecCCCceEEEEcCCceeeee
Confidence 8 8999999999999775 89999999999999764 458899999999999999999999999999999999999
Q ss_pred EceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCC
Q 002564 342 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 421 (907)
Q Consensus 342 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~ 421 (907)
++.+++....+..
T Consensus 155 NLV~Gr~a~v~~L------------------------------------------------------------------- 167 (362)
T KOG0294|consen 155 NLVRGRVAFVLNL------------------------------------------------------------------- 167 (362)
T ss_pred hhhcCccceeecc-------------------------------------------------------------------
Confidence 9876543222110
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEE
Q 002564 422 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501 (907)
Q Consensus 422 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 501 (907)
.+. .+.+.|+|.|.+++.++. ..|-+|
T Consensus 168 --------------------------------------------------~~~--at~v~w~~~Gd~F~v~~~-~~i~i~ 194 (362)
T KOG0294|consen 168 --------------------------------------------------KNK--ATLVSWSPQGDHFVVSGR-NKIDIY 194 (362)
T ss_pred --------------------------------------------------CCc--ceeeEEcCCCCEEEEEec-cEEEEE
Confidence 111 122667777776666665 456778
Q ss_pred ECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEE--CCCCcEEEEEeCCC
Q 002564 502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCF--SEDGKWLLSSGMDG 579 (907)
Q Consensus 502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~f--spdg~~l~s~s~Dg 579 (907)
.+.+......+..+..+.++.|- ++..|++|.+|+.|.+||.++..+...+.+|..+|.++.+ .|++.+|+|+|.||
T Consensus 195 q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 195 QLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDG 273 (362)
T ss_pred ecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCc
Confidence 77777766666666666666665 4778899999999999999999999999999999999984 56789999999999
Q ss_pred cEEEEEcCCC
Q 002564 580 SLRIWDVILA 589 (907)
Q Consensus 580 ~I~vwd~~~~ 589 (907)
.|+|||+...
T Consensus 274 ~I~vWd~~~~ 283 (362)
T KOG0294|consen 274 FIKVWDIDME 283 (362)
T ss_pred eEEEEEcccc
Confidence 9999999876
No 97
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.5e-27 Score=213.46 Aligned_cols=260 Identities=15% Similarity=0.274 Sum_probs=217.8
Q ss_pred CeEEEEeC--CeeEEEEc--ccccceEEEEee---CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcC
Q 002564 75 NHIAVVKR--AHQVATWS--RHSAKVNLLLLF---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHP 147 (907)
Q Consensus 75 ~~I~vw~~--~~~~~~~~--~h~~~V~~l~~~---g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p 147 (907)
+++.+-+. ++.+..+. .-.+.+..+++. .+.+++++.||++++||...... |+..++.|...+.++-+++
T Consensus 38 G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~---Pi~~~kEH~~EV~Svdwn~ 114 (311)
T KOG0277|consen 38 GRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK---PIHKFKEHKREVYSVDWNT 114 (311)
T ss_pred ceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc---chhHHHhhhhheEEecccc
Confidence 44777775 34444422 346778888874 67899999999999999544333 5777888888888888888
Q ss_pred CCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEEccCCceEEEEeecCCCC
Q 002564 148 DTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGA 226 (907)
Q Consensus 148 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~-~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~ 226 (907)
... ..+++++-|++|++|+...++-+.+|++|...|...+|+|. .+++++++.||.+++||++.......+..| ...
T Consensus 115 ~~r-~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah-~~E 192 (311)
T KOG0277|consen 115 VRR-RIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAH-NSE 192 (311)
T ss_pred ccc-eeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEec-cce
Confidence 764 56777899999999999999999999999999999999995 679999999999999999876555557766 689
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEECCCc-eeeeeeecccccCeEEEEEecCC-CEEEEEcCCCcEEEEEccCCCCCc
Q 002564 227 VTALAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDP 304 (907)
Q Consensus 227 v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~ 304 (907)
|.|+.|+.-...++++|+.|+.|+.||++.- .++..+. +|.-.|..+.|+|.. ..|++++.|-++++||...++.
T Consensus 193 il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~-gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds-- 269 (311)
T KOG0277|consen 193 ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELN-GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS-- 269 (311)
T ss_pred eEeecccccCCcEEEecCCCceEEEEehhhccccceeec-CCceEEEEEecCcchhhHhhhccccceEEecccccchh--
Confidence 9999999988889999999999999999876 4566665 999999999999965 5899999999999999876653
Q ss_pred ceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEc
Q 002564 305 RLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV 343 (907)
Q Consensus 305 ~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~ 343 (907)
.+.....|+.-+..+.|++ ++.++++++.|+.+.+|+.
T Consensus 270 -~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 270 -AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -hhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 4555668999999999998 7889999999999999983
No 98
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.5e-26 Score=218.24 Aligned_cols=307 Identities=18% Similarity=0.367 Sum_probs=259.3
Q ss_pred CEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEE
Q 002564 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231 (907)
Q Consensus 152 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~ 231 (907)
.+|++...++++. .++++.+.||...|+.++......++.+++.|.+.+||.+++|+++.++.+| .+.|.++.
T Consensus 125 srivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH-~GSVNsik 197 (481)
T KOG0300|consen 125 SRIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGH-TGSVNSIK 197 (481)
T ss_pred chheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeeccc-ccceeeEE
Confidence 4577777777643 3566788999999999999888889999999999999999999999999887 89999999
Q ss_pred EecCCCCEEEEEeCCCcEEEEEC------CC----------------------------------ceeeeeeecccccCe
Q 002564 232 FSSDGQPLLASGASSGVISIWNL------EK----------------------------------RRLQSVIREAHDNAI 271 (907)
Q Consensus 232 fs~dg~~~l~sg~~dg~I~iwd~------~~----------------------------------~~~~~~~~~~h~~~V 271 (907)
|++.+. ++++++.|++-.||.. .. ..++..+. +|.+.|
T Consensus 198 fh~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt-gH~~vV 275 (481)
T KOG0300|consen 198 FHNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT-GHRAVV 275 (481)
T ss_pred eccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee-ccccce
Confidence 999998 9999999999999952 10 01234455 899999
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceeccccee
Q 002564 272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE 351 (907)
Q Consensus 272 ~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~ 351 (907)
.+..|...|+.+++++.|.+..+||++++ .++..+.||....+.++-+|..+++++++.|.+.++||++.
T Consensus 276 ~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg----e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe------ 345 (481)
T KOG0300|consen 276 SACDWLAGGQQMVTASWDRTANLWDVETG----EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE------ 345 (481)
T ss_pred EehhhhcCcceeeeeeccccceeeeeccC----ceeccccCcchhccccccCCcceEEEEeccCceeEeccchh------
Confidence 99999999999999999999999999877 57888899999999999999999999999999999999752
Q ss_pred echhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEE
Q 002564 352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT 431 (907)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~ 431 (907)
.|.+++
T Consensus 346 --------------------------------------------------------------------------aI~sV~ 351 (481)
T KOG0300|consen 346 --------------------------------------------------------------------------AIQSVA 351 (481)
T ss_pred --------------------------------------------------------------------------hcceee
Confidence 111111
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC-ceee
Q 002564 432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKS 510 (907)
Q Consensus 432 ~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~ 510 (907)
.| .+|...|+++.|.-+. .+++|+.|.+|++||+.+. .++.
T Consensus 352 -----------------------------VF--------QGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplA 393 (481)
T KOG0300|consen 352 -----------------------------VF--------QGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLA 393 (481)
T ss_pred -----------------------------ee--------cccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcce
Confidence 11 3899999999998765 5889999999999999875 5678
Q ss_pred eeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEE----EeecCCCCeeeEEECCCC--cEEEEEeCCCcEEEE
Q 002564 511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR----KFEGHTDRITDFCFSEDG--KWLLSSGMDGSLRIW 584 (907)
Q Consensus 511 ~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~----~~~~h~~~I~~l~fspdg--~~l~s~s~Dg~I~vw 584 (907)
++...++++.++.+..+..+|.-.++..|++||++..++.+ .-+||...|++++|..+- .-|++++.|..+.=|
T Consensus 394 TIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 394 TIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGW 473 (481)
T ss_pred eeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeee
Confidence 88999999999999988899999999999999998665433 235899999999998654 348899999999999
Q ss_pred EcCCC
Q 002564 585 DVILA 589 (907)
Q Consensus 585 d~~~~ 589 (907)
.+...
T Consensus 474 ~in~p 478 (481)
T KOG0300|consen 474 KINTP 478 (481)
T ss_pred Eeccc
Confidence 98754
No 99
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.4e-26 Score=227.47 Aligned_cols=285 Identities=21% Similarity=0.250 Sum_probs=236.5
Q ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEE-EEe----------------ecCCCCEEEEEEecCC
Q 002564 174 LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV-TFT----------------HSMRGAVTALAFSSDG 236 (907)
Q Consensus 174 ~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~-~~~----------------~~~~~~v~~l~fs~dg 236 (907)
...+..|.-+|++++++|+.+++++++.+|+|.=|++.+++... .+. ..|...+.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 56677899999999999999999999999999999998887441 111 1346789999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCC
Q 002564 237 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP 316 (907)
Q Consensus 237 ~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~ 316 (907)
+ +|++|+.|..|.||+.++.+.+..+. +|.+.|.+++|-.....|++++.|++|++|+++.. ..+.++.||...
T Consensus 215 k-ylatgg~d~~v~Iw~~~t~ehv~~~~-ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~----s~vetlyGHqd~ 288 (479)
T KOG0299|consen 215 K-YLATGGRDRHVQIWDCDTLEHVKVFK-GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL----SYVETLYGHQDG 288 (479)
T ss_pred c-EEEecCCCceEEEecCcccchhhccc-ccccceeeeeeecCccceeeeecCCceEEEehhHh----HHHHHHhCCccc
Confidence 9 99999999999999999999999998 99999999999998889999999999999998865 467778899999
Q ss_pred CeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEe
Q 002564 317 PLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 396 (907)
Q Consensus 317 v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 396 (907)
|..|.-..-++.+-.|+.|+++++|++....+...
T Consensus 289 v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlif--------------------------------------------- 323 (479)
T KOG0299|consen 289 VLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIF--------------------------------------------- 323 (479)
T ss_pred eeeechhcccceEEeccccceeEEEeccccceeee---------------------------------------------
Confidence 99999998888888888999999999843322111
Q ss_pred eCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccc----cC
Q 002564 397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN----YA 472 (907)
Q Consensus 397 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~ 472 (907)
.++.+.+.|+++-.+ ..+++|+.+|.|.+|++...+++........... ..
T Consensus 324 ------------------------rg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~ 378 (479)
T KOG0299|consen 324 ------------------------RGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVN 378 (479)
T ss_pred ------------------------eCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccc
Confidence 123467888888755 5688999999999999999888877653211110 12
Q ss_pred cCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC----ceeeeeecCcceeEEEEeeCCCEEEEEe
Q 002564 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR----DLKSRWEVGCSLVKIVYHRVNGLLATVA 534 (907)
Q Consensus 473 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~i~~~~~s~~~~~la~~~ 534 (907)
++..|++++..|...++++|+.+|.|++|-+..+ .++..+...+-|++++|+++|+.+++|.
T Consensus 379 ~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 379 GNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEec
Confidence 2348999999999999999999999999999877 5566667779999999999999766663
No 100
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.3e-27 Score=229.97 Aligned_cols=282 Identities=16% Similarity=0.214 Sum_probs=232.2
Q ss_pred eeeeecccccCeEEEEEecCC-CEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCE
Q 002564 260 QSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF 338 (907)
Q Consensus 260 ~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i 338 (907)
+..+. +|...|.+++=+|+. ..+++|+.||.|++||+... .+...+..|.+.|..+++.. ..++++|.|.+|
T Consensus 59 v~~L~-gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR----~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtv 131 (433)
T KOG0268|consen 59 VGSLD-GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR----ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTV 131 (433)
T ss_pred hhhcc-ccccccchhhcCcchhhhhhccccCceEEEEehhhh----hhhheeecccCceeeEEecc--cceEEecCCcce
Confidence 44454 899999999999987 68999999999999999766 46777889999999999986 679999999999
Q ss_pred EEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeee
Q 002564 339 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 418 (907)
Q Consensus 339 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~ 418 (907)
+.|.+..+ .... +.+
T Consensus 132 K~wk~~~~-p~~t---------------------------ilg------------------------------------- 146 (433)
T KOG0268|consen 132 KQWKIDGP-PLHT---------------------------ILG------------------------------------- 146 (433)
T ss_pred eeeeccCC-ccee---------------------------eec-------------------------------------
Confidence 99987542 1111 000
Q ss_pred cCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-CEEEEEecCCe
Q 002564 419 PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGD 497 (907)
Q Consensus 419 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~ 497 (907)
.+.+..+.-+..++.+++++. .|.+||.+...++..+. --...|.++.|+|.. ..|++|+.|+.
T Consensus 147 -----~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sms--------wG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 147 -----KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMS--------WGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred -----cccccccccccccccccccCc--eeeecccccCCccceee--------cCCCceeEEecCCCcchheeeeccCCc
Confidence 123333333444455555443 59999999888888875 456789999999976 56777789999
Q ss_pred EEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccc-eeEEEeecCCCCeeeEEECCCCcEEEEEe
Q 002564 498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSG 576 (907)
Q Consensus 498 i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg~~l~s~s 576 (907)
|.+||+..+.+++.......-+.++|+|++-.+++|++|..++.||+... .++....+|.+.|.++.|||.|+-+++||
T Consensus 212 IvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred eEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence 99999999999999988888899999998888999999999999999865 56778899999999999999999999999
Q ss_pred CCCcEEEEEcCCCceeeEeeeC--CceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564 577 MDGSLRIWDVILARQIDAIHVD--VSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (907)
Q Consensus 577 ~Dg~I~vwd~~~~~~~~~~~~~--~~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (907)
.|.+||||.+..+.-...+... ..|.++.||.|.+|+++|+.|++ |++|.-+
T Consensus 292 yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~n-vRlWka~ 345 (433)
T KOG0268|consen 292 YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGN-VRLWKAK 345 (433)
T ss_pred ccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcc-eeeeecc
Confidence 9999999999988766665443 34999999999999999999996 9999854
No 101
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.5e-26 Score=227.06 Aligned_cols=284 Identities=19% Similarity=0.291 Sum_probs=241.1
Q ss_pred ccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCC-EEEEEeCCCCEEEEEceec
Q 002564 268 DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSVIQD 346 (907)
Q Consensus 268 ~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~-~l~s~~~dg~i~iwd~~~~ 346 (907)
.++|+++.|+|..+.|++++.|+++++|.++.... ..+....-...||.+.+|.|+|. .+++++....+..||+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC--hhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 46899999999999999999999999999987654 35566666678999999999998 8899999999999999765
Q ss_pred ccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCC-CCC
Q 002564 347 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE-NPT 425 (907)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~-~~~ 425 (907)
+....- +..+ ...
T Consensus 291 k~~k~~------------------------------------------------------------------~~~g~e~~ 304 (514)
T KOG2055|consen 291 KVTKLK------------------------------------------------------------------PPYGVEEK 304 (514)
T ss_pred cccccc------------------------------------------------------------------CCCCcccc
Confidence 432211 0001 124
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 002564 426 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG 505 (907)
Q Consensus 426 ~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 505 (907)
.+....+|++++++++.+..|.|.+....+++.+..+ .-.+.|..++|+.+++.|++++.+|.|.+||+..
T Consensus 305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~---------KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF---------KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred hhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee---------eeccEEeeEEEecCCcEEEEEcCCceEEEEecCC
Confidence 5778899999999999999999999999999999887 4678899999999999999999999999999999
Q ss_pred CceeeeeecCcce--eEEEEeeCCCEEEEEeCCCeEEEEEccc------ceeEEEeecCCCCeeeEEECCCCcEEEEEe-
Q 002564 506 RDLKSRWEVGCSL--VKIVYHRVNGLLATVADDLVIRLFDVVA------LRMVRKFEGHTDRITDFCFSEDGKWLLSSG- 576 (907)
Q Consensus 506 ~~~~~~~~~~~~i--~~~~~s~~~~~la~~~~dg~I~v~d~~~------~~~~~~~~~h~~~I~~l~fspdg~~l~s~s- 576 (907)
..+++++...+.+ +++|.++++.++|+|++.|.|.|||.++ .+++..+..-...|+++.|+||++.||.+|
T Consensus 376 ~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 376 NSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred cceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence 9999998777554 5677789999999999999999999764 356777777778899999999999998776
Q ss_pred -CCCcEEEEEcCCCceeeEeeeCC----ceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564 577 -MDGSLRIWDVILARQIDAIHVDV----SITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (907)
Q Consensus 577 -~Dg~I~vwd~~~~~~~~~~~~~~----~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (907)
.+..+|+-.+++......+.... .|+|++|||.|.+||.|..+|+ |.+|.+.
T Consensus 456 ~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~gr-v~l~kL~ 512 (514)
T KOG2055|consen 456 VKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGR-VHLFKLH 512 (514)
T ss_pred ccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCc-eeeEeec
Confidence 56789999999988887776543 2999999999999999999995 9999864
No 102
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=7e-26 Score=223.07 Aligned_cols=278 Identities=17% Similarity=0.293 Sum_probs=235.3
Q ss_pred EEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeec
Q 002564 143 CIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHS 222 (907)
Q Consensus 143 ~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~ 222 (907)
....|.. +.+++|+.|..+.++|..+++.+..|+||...|+.+.++|+...+++++.|-.|+||.............
T Consensus 225 ld~~~s~--~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~- 301 (506)
T KOG0289|consen 225 LDIIPSS--SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRP- 301 (506)
T ss_pred EeecCCC--CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccc-
Confidence 3345554 7899999999999999999999999999999999999999999999999999999999987776555555
Q ss_pred CCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeec-ccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCC
Q 002564 223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE-AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD 301 (907)
Q Consensus 223 ~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~ 301 (907)
|.++|+.+..+|.|. ++++++.||+..+.|++++..+..... ...-.+++.+|+|||.++.+|..|+.+++||+..++
T Consensus 302 h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~ 380 (506)
T KOG0289|consen 302 HEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT 380 (506)
T ss_pred ccccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc
Confidence 489999999999999 899999999999999999998887762 123458999999999999999999999999988764
Q ss_pred CCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeee
Q 002564 302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 381 (907)
Q Consensus 302 ~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 381 (907)
.+..+.+|+++|..++|+.+|-+|+++..|+.|++||++..+....+..
T Consensus 381 ----~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l--------------------------- 429 (506)
T KOG0289|consen 381 ----NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL--------------------------- 429 (506)
T ss_pred ----ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec---------------------------
Confidence 4667789999999999999999999999999999999987654433321
Q ss_pred cccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC--Cccc
Q 002564 382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS--GISR 459 (907)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~--~~~~ 459 (907)
.....+.++.|.+.|.++++++++=.|++++-.+ ....
T Consensus 430 ----------------------------------------~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 430 ----------------------------------------DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEI 469 (506)
T ss_pred ----------------------------------------cccccceeEEEcCCCCeEEeecceeEEEEEecccccceee
Confidence 1124689999999999999997777777776433 3333
Q ss_pred eeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 002564 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (907)
Q Consensus 460 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 503 (907)
..+ ..|.+..+++.|....+++++++.|..++++.+
T Consensus 470 ~~~--------~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 470 KEL--------ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ehh--------hhcccccceeeecccceEEeeccchhheEEeec
Confidence 333 378889999999999999999999999988764
No 103
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=3.7e-26 Score=251.29 Aligned_cols=291 Identities=20% Similarity=0.255 Sum_probs=234.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEe--cCCeEEEEEccC------------CceEEEEeecCCCCEEEEEEecCCCCEEEEEeC
Q 002564 180 WGSSISSCVSSPALDVVAVGC--SDGKIHVHNVRY------------DEELVTFTHSMRGAVTALAFSSDGQPLLASGAS 245 (907)
Q Consensus 180 h~~~I~~l~~sp~~~~la~g~--~dg~I~iwd~~~------------~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~ 245 (907)
++..|.++..+|+|..+|+|+ .||.++||+.+. .+.+.+... |.+.|+|+.|+|||+ +||+|+.
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~-h~~sv~CVR~S~dG~-~lAsGSD 89 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDD-HDGSVNCVRFSPDGS-YLASGSD 89 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecc-ccCceeEEEECCCCC-eEeeccC
Confidence 356799999999999999999 899999998751 123344444 489999999999999 9999999
Q ss_pred CCcEEEEECCC------------------ceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCccee
Q 002564 246 SGVISIWNLEK------------------RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL 307 (907)
Q Consensus 246 dg~I~iwd~~~------------------~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 307 (907)
|+.|.||.... -+....+. +|.+.|..++|+|++.+|++++.|++|.+|+..+. ..+
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF----~~~ 164 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF----ELL 164 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceeccCCCccEEEEecccceEEEEccccc----eee
Confidence 99999999772 13566677 89999999999999999999999999999976654 577
Q ss_pred EeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccc
Q 002564 308 RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRER 387 (907)
Q Consensus 308 ~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (907)
..+.+|.+.|..+.|.|-|++|++-+.|++|++|++..-.....+..+-
T Consensus 165 ~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf------------------------------- 213 (942)
T KOG0973|consen 165 KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF------------------------------- 213 (942)
T ss_pred eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch-------------------------------
Confidence 8889999999999999999999999999999999965433333221100
Q ss_pred cccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeC----CCcEEEEeCCCCccceeee
Q 002564 388 DWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA----GGWIERFNLQSGISRGSYL 463 (907)
Q Consensus 388 ~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~----dg~i~i~d~~~~~~~~~~~ 463 (907)
.. .........+.|||||.+|++... ...+.|.+-.+-+.-..+.
T Consensus 214 ------------------------------~~-~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv 262 (942)
T KOG0973|consen 214 ------------------------------EE-SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV 262 (942)
T ss_pred ------------------------------hh-CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee
Confidence 00 011256788999999999998753 2367787776666555554
Q ss_pred ccccccccCcCCcEEEEEEcCC-----CC------------EEEEEecCCeEEEEECCCCceeeeeec--CcceeEEEEe
Q 002564 464 DMSERSNYAHNGEVVGVACDST-----NT------------LMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYH 524 (907)
Q Consensus 464 ~~~~~~~~~h~~~v~~l~~s~~-----~~------------~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~i~~~~~s 524 (907)
+|.+++.++.|+|. .+ .+++|+.|++|.||.....+++..... ...|..++|+
T Consensus 263 --------GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWs 334 (942)
T KOG0973|consen 263 --------GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWS 334 (942)
T ss_pred --------cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEc
Confidence 99999999999871 12 678899999999999977776655432 3799999999
Q ss_pred eCCCEEEEEeCCCeEEEEEcccc
Q 002564 525 RVNGLLATVADDLVIRLFDVVAL 547 (907)
Q Consensus 525 ~~~~~la~~~~dg~I~v~d~~~~ 547 (907)
|||-.|.+++.||+|.++..+..
T Consensus 335 pdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 335 PDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred CCCCeEEEEecCCeEEEEEcchH
Confidence 99999999999999999988653
No 104
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.2e-26 Score=239.60 Aligned_cols=346 Identities=19% Similarity=0.278 Sum_probs=273.8
Q ss_pred EEEEc-CCCCEEEEEecCCeEEEEEccCCce------EEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc-
Q 002564 186 SCVSS-PALDVVAVGCSDGKIHVHNVRYDEE------LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR- 257 (907)
Q Consensus 186 ~l~~s-p~~~~la~g~~dg~I~iwd~~~~~~------~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~- 257 (907)
.+..+ |.+++|++|+.||.|++|+...... +.++.. |...|..+....+|+ .|++++.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~-HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH-HSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhh-hHhHHhhHHhhcCCC-ceEEecCCceEEEeecccCc
Confidence 33444 4567899999999999999875433 444544 488999999999998 7999999999999999887
Q ss_pred -eeeeeeecccccCeEEEEE-ecCCCEEEEEcCCCcEEEEEccCCCC------CcceeEecc-CCCCCCeEEEEecCCCE
Q 002564 258 -RLQSVIREAHDNAIISLHF-FANEPVLMSASADNSIKMWIFDTTDG------DPRLLRFRS-GHSAPPLCIRFYANGRH 328 (907)
Q Consensus 258 -~~~~~~~~~h~~~V~~l~~-~~~~~~l~s~~~d~~i~vw~~~~~~~------~~~~~~~~~-~h~~~v~~i~~~~~g~~ 328 (907)
-+..++. .|...|.|+++ .++...+++||-|+.|.+||++.... .......+. |+..+|.+++..+.|..
T Consensus 107 ~~c~stir-~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIR-THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhh-cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 6777887 89999999999 78888999999999999999986632 111122233 88999999999999999
Q ss_pred EEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEee
Q 002564 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408 (907)
Q Consensus 329 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~ 408 (907)
+++|+..+.+++||.++.+....+.
T Consensus 186 ivsGgtek~lr~wDprt~~kimkLr------------------------------------------------------- 210 (735)
T KOG0308|consen 186 IVSGGTEKDLRLWDPRTCKKIMKLR------------------------------------------------------- 210 (735)
T ss_pred EEecCcccceEEeccccccceeeee-------------------------------------------------------
Confidence 9999999999999988766544432
Q ss_pred eceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCE
Q 002564 409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTL 488 (907)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 488 (907)
+|...|+++.+++||+.++++++||+|++||+....++.++. .|...|.++..+|+-..
T Consensus 211 -------------GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~--------vH~e~VWaL~~~~sf~~ 269 (735)
T KOG0308|consen 211 -------------GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI--------VHKEGVWALQSSPSFTH 269 (735)
T ss_pred -------------ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE--------eccCceEEEeeCCCcce
Confidence 577999999999999999999999999999999999999986 89999999999999999
Q ss_pred EEEEecCCeEEEEECCC-CceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECC
Q 002564 489 MISAGYHGDIKVWDFKG-RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE 567 (907)
Q Consensus 489 l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp 567 (907)
+++|+.||.|..=|+.+ .+....++...++..+..+...+-+-+++.|+.|+-|..+- ...+++
T Consensus 270 vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~---------------~~~l~~ 334 (735)
T KOG0308|consen 270 VYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP---------------DIALSV 334 (735)
T ss_pred EEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc---------------cccccc
Confidence 99999999999999988 45555566678888888886555557788889998885431 114555
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeec
Q 002564 568 DGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (907)
Q Consensus 568 dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~ 628 (907)
.|++.. -+.|....+.+.. ..+-..+.+..++...++-.|.+++.|-...|+ +.+||+
T Consensus 335 s~~~~~-~~T~~~~~~~~~~-~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gn-v~lwDI 392 (735)
T KOG0308|consen 335 SGDLDF-FSTDSNNHSCDLT-NTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGN-VALWDI 392 (735)
T ss_pred CCCCCc-ccccCCCcccccc-CCCceeccCchhhhhhhhhcCcceEeeecCCCC-EEEEEe
Confidence 555444 2334444444432 234445555566777777778888888888884 889987
No 105
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=1.4e-26 Score=231.42 Aligned_cols=285 Identities=13% Similarity=0.242 Sum_probs=243.6
Q ss_pred ccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEecc--CCCCCCeEEEEecCCCEEEEEeCCCCEEEEEc
Q 002564 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS--GHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343 (907)
Q Consensus 266 ~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~--~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~ 343 (907)
.|..-|.++..+...++++||+ .|.|+|||+........ +..+. .....+.++...|||+.|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~P-vsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSP-VSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCc-cccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 5888899999999999999998 47899999976643322 22221 23567899999999999999999999999999
Q ss_pred eecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCC
Q 002564 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423 (907)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~ 423 (907)
........... ...
T Consensus 495 AapTprikael------------------------------------------------------------------tss 508 (705)
T KOG0639|consen 495 AAPTPRIKAEL------------------------------------------------------------------TSS 508 (705)
T ss_pred cCCCcchhhhc------------------------------------------------------------------CCc
Confidence 76543211100 001
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 002564 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (907)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 503 (907)
.....+++++||.+..+.++.||.|.|||+.+...++.|. +|.+.+.||.++++|..|.|||-|.+||.||+
T Consensus 509 apaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq--------GhtDGascIdis~dGtklWTGGlDntvRcWDl 580 (705)
T KOG0639|consen 509 APACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ--------GHTDGASCIDISKDGTKLWTGGLDNTVRCWDL 580 (705)
T ss_pred chhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc--------CCCCCceeEEecCCCceeecCCCccceeehhh
Confidence 1345678999999999999999999999999999999986 99999999999999999999999999999999
Q ss_pred CCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEE
Q 002564 504 KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 583 (907)
Q Consensus 504 ~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~v 583 (907)
..++.+...+..+.|.++.++|++.++|+|..++.+.|..... .....+.-|...|.++.|++.|+|+++.+.|..+..
T Consensus 581 regrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLna 659 (705)
T KOG0639|consen 581 REGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA 659 (705)
T ss_pred hhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeeecCchhhhhh
Confidence 9999999988999999999999999999999999999987753 345566779999999999999999999999999999
Q ss_pred EEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeec
Q 002564 584 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (907)
Q Consensus 584 wd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~ 628 (907)
|..+-|.-+...+..++|.++.+|-|.+|++|++.|.+ ..||.+
T Consensus 660 wrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkk-ATVYeV 703 (705)
T KOG0639|consen 660 WRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKK-ATVYEV 703 (705)
T ss_pred ccCccccceeeccccCcceeeeeccCceEEEecCCCcc-eEEEEE
Confidence 99999999988888889999999999999999999974 666653
No 106
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=7.5e-26 Score=227.28 Aligned_cols=301 Identities=10% Similarity=0.163 Sum_probs=231.2
Q ss_pred CeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCc----eEEEEeecCCCCEEEEEEecCCCCEEEEEeCC
Q 002564 171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE----ELVTFTHSMRGAVTALAFSSDGQPLLASGASS 246 (907)
Q Consensus 171 ~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~----~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~d 246 (907)
+..-..+++|+..|+++++.|.|-.+++|+.|..|++||+.... ..+.+.......|.+++|++.|. .+++.+..
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~ 235 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD-QILVVSGS 235 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC-eEEEEecC
Confidence 34445678899999999999999999999999999999987432 22333333356899999999998 45555556
Q ss_pred CcEEEEECCCceeeeeee-----------cccccCeEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCCcceeEec--cC
Q 002564 247 GVISIWNLEKRRLQSVIR-----------EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFR--SG 312 (907)
Q Consensus 247 g~I~iwd~~~~~~~~~~~-----------~~h~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~--~~ 312 (907)
...+|+|-.........+ .+|...+++.+|+|..+ .+++++.||++++|+++........+... .+
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 789999966554443332 48999999999999764 89999999999999998766544444333 34
Q ss_pred CCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccce
Q 002564 313 HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV 392 (907)
Q Consensus 313 h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 392 (907)
..-+++.++|++||+.|++|..||+|.+|+.........
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~----------------------------------------- 354 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPV----------------------------------------- 354 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeecCCcccccc-----------------------------------------
Confidence 456889999999999999999999999999743221111
Q ss_pred EEEeeCCceEEEEEeeeceecceeeecCCCCC--CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc-ceeeecccccc
Q 002564 393 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENP--TAVKACTISACGNFAVLGTAGGWIERFNLQSGIS-RGSYLDMSERS 469 (907)
Q Consensus 393 ~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~ 469 (907)
+.....|. ..|+|++||++|++|++-+.|+++++||+...+. +.....
T Consensus 355 ------------------------~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg----- 405 (641)
T KOG0772|consen 355 ------------------------MKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG----- 405 (641)
T ss_pred ------------------------eEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcC-----
Confidence 01111222 4899999999999999999999999999976433 322221
Q ss_pred ccCcCCcEEEEEEcCCCCEEEEEe------cCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEE
Q 002564 470 NYAHNGEVVGVACDSTNTLMISAG------YHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLF 542 (907)
Q Consensus 470 ~~~h~~~v~~l~~s~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~ 542 (907)
.....+-+.++|+|+.++|++|. ..|.+.+||..+...+..+... ..|..+.|+|.=+.|.+|+.||.++||
T Consensus 406 -L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 406 -LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred -CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 12334567889999999999986 3578999999998888888765 788999999999999999999999987
Q ss_pred E
Q 002564 543 D 543 (907)
Q Consensus 543 d 543 (907)
=
T Consensus 485 Y 485 (641)
T KOG0772|consen 485 Y 485 (641)
T ss_pred E
Confidence 3
No 107
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.6e-24 Score=191.89 Aligned_cols=297 Identities=19% Similarity=0.297 Sum_probs=230.2
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEcc------CC--------ceEEEEeecCCCCEEEEEEecCCCC
Q 002564 173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR------YD--------EELVTFTHSMRGAVTALAFSSDGQP 238 (907)
Q Consensus 173 ~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~------~~--------~~~~~~~~~~~~~v~~l~fs~dg~~ 238 (907)
.+..+.. ...|.+++|+|.|.+.|+|+...+++|.-.. .+ ..+..-..+|++.|+|.+|+|+|+
T Consensus 25 ~i~~l~d-sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge- 102 (350)
T KOG0641|consen 25 AINILED-SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE- 102 (350)
T ss_pred EEEEecc-hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC-
Confidence 3444443 7789999999999999999999998886432 11 123444567899999999999999
Q ss_pred EEEEEeCCCcEEEEECCCceee-----eeeecccccCeEEEEEecC----CCEEEEEcCCCcEEEEEccCCCCCcceeEe
Q 002564 239 LLASGASSGVISIWNLEKRRLQ-----SVIREAHDNAIISLHFFAN----EPVLMSASADNSIKMWIFDTTDGDPRLLRF 309 (907)
Q Consensus 239 ~l~sg~~dg~I~iwd~~~~~~~-----~~~~~~h~~~V~~l~~~~~----~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~ 309 (907)
++++|+.|.+|++.-.+...+. ..+. -|.+.|..++|..+ +.+|++++. |..+||-.+.+.+ .-+..
T Consensus 103 liatgsndk~ik~l~fn~dt~~~~g~dle~n-mhdgtirdl~fld~~~s~~~il~s~ga-gdc~iy~tdc~~g--~~~~a 178 (350)
T KOG0641|consen 103 LIATGSNDKTIKVLPFNADTCNATGHDLEFN-MHDGTIRDLAFLDDPESGGAILASAGA-GDCKIYITDCGRG--QGFHA 178 (350)
T ss_pred eEEecCCCceEEEEecccccccccCcceeee-ecCCceeeeEEecCCCcCceEEEecCC-CcceEEEeecCCC--Cccee
Confidence 9999999999999876544332 2233 69999999999764 456777664 4455554444443 44667
Q ss_pred ccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccc
Q 002564 310 RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDW 389 (907)
Q Consensus 310 ~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 389 (907)
+.||++.|.++ |+-+|-.+++|++|.+|++||++-+..+..+....
T Consensus 179 ~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~--------------------------------- 224 (350)
T KOG0641|consen 179 LSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF--------------------------------- 224 (350)
T ss_pred ecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcc---------------------------------
Confidence 78999988776 33478899999999999999998766555442210
Q ss_pred cceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeecccccc
Q 002564 390 CNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS 469 (907)
Q Consensus 390 ~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~ 469 (907)
....-..+.|.++++.|.|+.+++|..|....+||+..+..++.|.
T Consensus 225 ----------------------------~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~------ 270 (350)
T KOG0641|consen 225 ----------------------------HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH------ 270 (350)
T ss_pred ----------------------------cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC------
Confidence 0000123679999999999999999999999999999999999985
Q ss_pred ccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC---c--eeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEc
Q 002564 470 NYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR---D--LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV 544 (907)
Q Consensus 470 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~--~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~ 544 (907)
.|...|.++.|+|...++++++.|..|++-|+... + ..-.-++...+..+.|+|..--+++.+.|.++.+|-+
T Consensus 271 --phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 271 --PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred --CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 89999999999999999999999999999998743 1 1222345578889999999989999999999999975
Q ss_pred c
Q 002564 545 V 545 (907)
Q Consensus 545 ~ 545 (907)
.
T Consensus 349 ~ 349 (350)
T KOG0641|consen 349 N 349 (350)
T ss_pred C
Confidence 4
No 108
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7e-26 Score=225.75 Aligned_cols=292 Identities=20% Similarity=0.309 Sum_probs=230.8
Q ss_pred CcEEEEecCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEEe-cCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCC
Q 002564 161 GSLQLWNISTKKKLYEFKGW-GSSISSCVSSPALDVVAVGC-SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238 (907)
Q Consensus 161 g~i~iwd~~~~~~~~~~~~h-~~~I~~l~~sp~~~~la~g~-~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~ 238 (907)
.++.+||+++|....++++- ...-.++..- .+.+++++. ....|.+|.+...........- .++|.+++-+|+|.
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~-Pg~v~al~s~n~G~- 94 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVL-PGPVHALASSNLGY- 94 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhccc-ccceeeeecCCCce-
Confidence 45999999999999999874 1111112111 224566554 3468999998765544422222 58899999999998
Q ss_pred EEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccC-----CCCCcceeEeccCC
Q 002564 239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT-----TDGDPRLLRFRSGH 313 (907)
Q Consensus 239 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~-----~~~~~~~~~~~~~h 313 (907)
+|+.|+..|.|++|.+.+|.++..+. +|-..|+++.|+.|+.+++|||.||.|.+|.+.. .+.....+..+..|
T Consensus 95 ~l~ag~i~g~lYlWelssG~LL~v~~-aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H 173 (476)
T KOG0646|consen 95 FLLAGTISGNLYLWELSSGILLNVLS-AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH 173 (476)
T ss_pred EEEeecccCcEEEEEeccccHHHHHH-hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC
Confidence 78888799999999999999999997 9999999999999999999999999999997642 23355678888999
Q ss_pred CCCCeEEEEecC--CCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccc
Q 002564 314 SAPPLCIRFYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCN 391 (907)
Q Consensus 314 ~~~v~~i~~~~~--g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 391 (907)
.-+|+.+...+. ..+++|++.|.++++||+..+.....+.
T Consensus 174 tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-------------------------------------- 215 (476)
T KOG0646|consen 174 TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-------------------------------------- 215 (476)
T ss_pred cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--------------------------------------
Confidence 999999988763 4689999999999999997765443321
Q ss_pred eEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc--------ceeee
Q 002564 392 VVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS--------RGSYL 463 (907)
Q Consensus 392 ~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~--------~~~~~ 463 (907)
.+..+.+++++|-++.+++|+.+|.|.+.++..... .....
T Consensus 216 -------------------------------fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~ 264 (476)
T KOG0646|consen 216 -------------------------------FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEE 264 (476)
T ss_pred -------------------------------cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccc
Confidence 137899999999999999999999999988754331 11122
Q ss_pred ccccccccCcCC--cEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeee-cCcceeEEEEee
Q 002564 464 DMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHR 525 (907)
Q Consensus 464 ~~~~~~~~~h~~--~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~s~ 525 (907)
........+|.+ +|+|++++-||.+|++|+.||.++|||+.+.++++++. ..++|+.+.+.|
T Consensus 265 ~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 265 NTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred cceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence 222234468888 99999999999999999999999999999999999988 668888888765
No 109
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=9e-26 Score=235.13 Aligned_cols=241 Identities=21% Similarity=0.334 Sum_probs=204.7
Q ss_pred EEEEcccccceEEEEe-eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccE-EEEcCCCCCCEEEEEecCCcE
Q 002564 86 VATWSRHSAKVNLLLL-FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPT-CIMHPDTYLNKVIVGSQEGSL 163 (907)
Q Consensus 86 ~~~~~~h~~~V~~l~~-~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~l~~~s~dg~i 163 (907)
-+.+.||...|..++. ++..++++|+||++++|+-..++... ...+..+.+++.. .++.+.. ...+++|+.|.++
T Consensus 7 s~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~--~~~~~~~~g~i~~~i~y~e~~-~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLE--THAFEGPKGFIANSICYAESD-KGRLVVGGMDTTI 83 (745)
T ss_pred EEEeccCccchheeEecCCeEEeecCCCCceeeeeccCccccc--ceecccCcceeeccceecccc-CcceEeecccceE
Confidence 4558999999999886 67789999999999999987766521 2334456666655 5555422 1469999999999
Q ss_pred EEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEE
Q 002564 164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASG 243 (907)
Q Consensus 164 ~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg 243 (907)
.+|...+..+++++++|.+.|.|+....++. +++|+.|.++++|-. ++....+.+| ...|.++++-|++. +++|
T Consensus 84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH-~asVWAv~~l~e~~--~vTg 157 (745)
T KOG0301|consen 84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGH-TASVWAVASLPENT--YVTG 157 (745)
T ss_pred EEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCc-chheeeeeecCCCc--EEec
Confidence 9999999999999999999999999888886 999999999999975 4556666554 89999999999884 8899
Q ss_pred eCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEe
Q 002564 244 ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323 (907)
Q Consensus 244 ~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 323 (907)
+.|.+|++|.- ++.+.++. +|...|.++++.+++ .+++++.||.|+.|+++. ..+....||+.-+.++...
T Consensus 158 saDKtIklWk~--~~~l~tf~-gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g-----e~l~~~~ghtn~vYsis~~ 228 (745)
T KOG0301|consen 158 SADKTIKLWKG--GTLLKTFS-GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG-----EVLLEMHGHTNFVYSISMA 228 (745)
T ss_pred cCcceeeeccC--Cchhhhhc-cchhheeeeEEecCC-CeEeecCCceEEEEeccC-----ceeeeeeccceEEEEEEec
Confidence 99999999984 88899998 999999999999886 588999999999998843 4677778999999999988
Q ss_pred cCCCEEEEEeCCCCEEEEEce
Q 002564 324 ANGRHILSAGQDRAFRLFSVI 344 (907)
Q Consensus 324 ~~g~~l~s~~~dg~i~iwd~~ 344 (907)
.++..+++++.|+++++|+..
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred CCCCeEEEecCCceEEEeecC
Confidence 888899999999999999965
No 110
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3e-25 Score=209.66 Aligned_cols=279 Identities=19% Similarity=0.331 Sum_probs=207.9
Q ss_pred EEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcce
Q 002564 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL 306 (907)
Q Consensus 227 v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~ 306 (907)
..|+.|++.|. +||+|+.+|.|.|||+.+...-..+. +|..+|++++|+++|+.|+|++.|..|++||+..++.
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~ls-aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~---- 99 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARMLS-AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP---- 99 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccccchhhhhh-ccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc----
Confidence 78999999999 99999999999999999999888887 9999999999999999999999999999999987752
Q ss_pred eEeccCCCCCCeEEEEecCC-CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccc
Q 002564 307 LRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR 385 (907)
Q Consensus 307 ~~~~~~h~~~v~~i~~~~~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 385 (907)
++.. ....+|+.+.|+|.. +..+.+-.+..-.+.++..
T Consensus 100 l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~---------------------------------------- 138 (405)
T KOG1273|consen 100 LKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD---------------------------------------- 138 (405)
T ss_pred eeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecC----------------------------------------
Confidence 2222 357899999999933 2333222221111111110
Q ss_pred cccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeecc
Q 002564 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM 465 (907)
Q Consensus 386 ~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~ 465 (907)
..-+.+..+++|..
T Consensus 139 ---------------------------------------~~h~~Lp~d~d~dl--------------------------- 152 (405)
T KOG1273|consen 139 ---------------------------------------PKHSVLPKDDDGDL--------------------------- 152 (405)
T ss_pred ---------------------------------------CceeeccCCCcccc---------------------------
Confidence 00111111111110
Q ss_pred ccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC--cceeEEEEeeCCCEEEEEeCCCeEEEEE
Q 002564 466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFD 543 (907)
Q Consensus 466 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~dg~I~v~d 543 (907)
+....+..|++.|+++++|...|.+.++|..+.+++..++.. ..|.++.++..|+.++.-+.|..||.|+
T Consensus 153 --------n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 153 --------NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYE 224 (405)
T ss_pred --------ccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence 011112267888999999999999999999999988887665 6889999999999999999999999999
Q ss_pred cccce---------eEEEeec--CCCCeeeEEECCCCcEEEEEe-CCCcEEEEEcCCCceeeEeeeCCc--eEEEEECCC
Q 002564 544 VVALR---------MVRKFEG--HTDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILARQIDAIHVDVS--ITALSLSPN 609 (907)
Q Consensus 544 ~~~~~---------~~~~~~~--h~~~I~~l~fspdg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~--v~~l~~spd 609 (907)
+..-- +.+++.. ..-.-.+++||.||.|++.++ .-..++||.-..|.+++.+.+... ...+.|+|-
T Consensus 225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~ 304 (405)
T KOG1273|consen 225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPV 304 (405)
T ss_pred hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccc
Confidence 86311 1111111 112345789999999998776 456799999999999999998763 889999999
Q ss_pred CceEEEEEecCCeEEEeec
Q 002564 610 MDVLATAHVDQNGVYLWVN 628 (907)
Q Consensus 610 g~~lat~~~d~~~i~lW~~ 628 (907)
...+++.. .| .|++|..
T Consensus 305 rp~i~si~-sg-~v~iw~~ 321 (405)
T KOG1273|consen 305 RPIIASIA-SG-VVYIWAV 321 (405)
T ss_pred eeeeeecc-CC-ceEEEEe
Confidence 88888883 33 5999985
No 111
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.6e-25 Score=212.05 Aligned_cols=247 Identities=15% Similarity=0.233 Sum_probs=212.8
Q ss_pred EEEEcccccceEEEEeeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEE
Q 002564 86 VATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL 165 (907)
Q Consensus 86 ~~~~~~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~i 165 (907)
+..+..|.++|++++.+|.++||||.|-+|+|||+..... +..+..|.+.+..+.|.++...+.|++|+.||.|.+
T Consensus 36 lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~q----lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQ----LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred cccccccccceeEEEecceeEeccCCCCcEEEEeccchhh----hcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 4557899999999999999999999999999999999888 677777888888888888875568999999999999
Q ss_pred EecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeC
Q 002564 166 WNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS 245 (907)
Q Consensus 166 wd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~ 245 (907)
|+....+++.++++|.+.|+.++.+|.+++-++.+.|+.+++||+-+|+.-...... ...+.+.|+|.|. .++.+..
T Consensus 112 w~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~--~~at~v~w~~~Gd-~F~v~~~ 188 (362)
T KOG0294|consen 112 WRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK--NKATLVSWSPQGD-HFVVSGR 188 (362)
T ss_pred EEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC--CcceeeEEcCCCC-EEEEEec
Confidence 999999999999999999999999999999999999999999999999877776654 3455699999999 5666654
Q ss_pred CCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEe--
Q 002564 246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY-- 323 (907)
Q Consensus 246 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~-- 323 (907)
..|-+|.+++......+. ....+.++.|. ++..|++|+.|+.|++||-+.. .++..+.+|...|..+.+.
T Consensus 189 -~~i~i~q~d~A~v~~~i~--~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~----~~~~~~~AH~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 189 -NKIDIYQLDNASVFREIE--NPKRILCATFL-DGSELLVGGDNEWISLKDTDSD----TPLTEFLAHENRVKDIASYTN 260 (362)
T ss_pred -cEEEEEecccHhHhhhhh--ccccceeeeec-CCceEEEecCCceEEEeccCCC----ccceeeecchhheeeeEEEec
Confidence 479999999888877775 33567777776 4558999999999999987653 5667778999999999965
Q ss_pred cCCCEEEEEeCCCCEEEEEceecc
Q 002564 324 ANGRHILSAGQDRAFRLFSVIQDQ 347 (907)
Q Consensus 324 ~~g~~l~s~~~dg~i~iwd~~~~~ 347 (907)
|++.+|++++.||.|++||+....
T Consensus 261 ~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred CCceEEEEeccCceEEEEEccccc
Confidence 367899999999999999998763
No 112
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.3e-25 Score=209.65 Aligned_cols=280 Identities=17% Similarity=0.230 Sum_probs=213.0
Q ss_pred CCCCCEEEEEEcC-CCCEEEEEecCCeEEEEEccC-CceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 002564 179 GWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK 256 (907)
Q Consensus 179 ~h~~~I~~l~~sp-~~~~la~g~~dg~I~iwd~~~-~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~ 256 (907)
.....|.+++||| ...+++.|+.||+||+|++.. |..+.+....+.++|.+++|+.||. .+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEccC
Confidence 3478899999999 455777999999999999986 4555555566689999999999998 899999999999999999
Q ss_pred ceeeeeeecccccCeEEEEEecCCC--EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeC
Q 002564 257 RRLQSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ 334 (907)
Q Consensus 257 ~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~ 334 (907)
++....- .|.++|.++.|.+... .|+||+.|.+|+.||.+... .+... .-.+.+.++.. ....++.+..
T Consensus 104 ~Q~~~v~--~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~----pv~t~-~LPeRvYa~Dv--~~pm~vVata 174 (347)
T KOG0647|consen 104 GQVSQVA--AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN----PVATL-QLPERVYAADV--LYPMAVVATA 174 (347)
T ss_pred CCeeeee--ecccceeEEEEecCCCcceeEecccccceeecccCCCC----eeeee-eccceeeehhc--cCceeEEEec
Confidence 9665544 6999999999998776 89999999999999887553 22222 22334444433 2447888889
Q ss_pred CCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecc
Q 002564 335 DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 414 (907)
Q Consensus 335 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~ 414 (907)
++.|.+|+++.+........
T Consensus 175 ~r~i~vynL~n~~te~k~~~------------------------------------------------------------ 194 (347)
T KOG0647|consen 175 ERHIAVYNLENPPTEFKRIE------------------------------------------------------------ 194 (347)
T ss_pred CCcEEEEEcCCCcchhhhhc------------------------------------------------------------
Confidence 99999999876543221100
Q ss_pred eeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccc---cCcCCcEEEEEEcCCCCEEEE
Q 002564 415 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN---YAHNGEVVGVACDSTNTLMIS 491 (907)
Q Consensus 415 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~s~~~~~l~s 491 (907)
....-.++|+++-++....++|+-+|.+.+..+..+.....|.-...+.. ...-..|++|+|+|....|+|
T Consensus 195 ------SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvT 268 (347)
T KOG0647|consen 195 ------SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVT 268 (347)
T ss_pred ------CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEE
Confidence 01125688999999998889999999999999988744433321111110 011236889999999999999
Q ss_pred EecCCeEEEEECCCCceeeee-ecCcceeEEEEeeCCCEEEEEe
Q 002564 492 AGYHGDIKVWDFKGRDLKSRW-EVGCSLVKIVYHRVNGLLATVA 534 (907)
Q Consensus 492 ~~~dg~i~iwd~~~~~~~~~~-~~~~~i~~~~~s~~~~~la~~~ 534 (907)
+|.||++.+||-.....+... .+..+|++.+|+.+|.++|.+.
T Consensus 269 aGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 269 AGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 999999999998876666554 4558999999999999888764
No 113
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1e-25 Score=212.51 Aligned_cols=296 Identities=14% Similarity=0.244 Sum_probs=244.8
Q ss_pred eeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564 130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209 (907)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd 209 (907)
++.+.+|...++.++..... +.+.+++.|.+-+||.+++|+|+.++.||.+.|+++.|++.+.++++++.|++.+||.
T Consensus 141 vre~~GHkDGiW~Vaa~~tq--pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQ--PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred hhhhcccccceeeehhhcCC--cceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 56677787777777766655 6889999999999999999999999999999999999999999999999999999996
Q ss_pred cc------C------------------------------C----ceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcE
Q 002564 210 VR------Y------------------------------D----EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI 249 (907)
Q Consensus 210 ~~------~------------------------------~----~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I 249 (907)
.. . + .++..+.+ |.+.|.++.|...|+ .+++++.|.+.
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL~gg~-Q~vTaSWDRTA 296 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRAVVSACDWLAGGQ-QMVTASWDRTA 296 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec-cccceEehhhhcCcc-eeeeeeccccc
Confidence 21 0 0 12344555 478899999999898 89999999999
Q ss_pred EEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEE
Q 002564 250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI 329 (907)
Q Consensus 250 ~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l 329 (907)
.+||++++.++..+. +|....+.++-+|..+++++++.|.+.++||+... ...+..+.||...|+++.|..+. .+
T Consensus 297 nlwDVEtge~v~~Lt-GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea---I~sV~VFQGHtdtVTS~vF~~dd-~v 371 (481)
T KOG0300|consen 297 NLWDVETGEVVNILT-GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA---IQSVAVFQGHTDTVTSVVFNTDD-RV 371 (481)
T ss_pred eeeeeccCceecccc-CcchhccccccCCcceEEEEeccCceeEeccchhh---cceeeeecccccceeEEEEecCC-ce
Confidence 999999999999998 99999999999999999999999999999999843 24567788999999999999754 79
Q ss_pred EEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeee
Q 002564 330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN 409 (907)
Q Consensus 330 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~ 409 (907)
++|+.|.+|++||+++...... +.
T Consensus 372 VSgSDDrTvKvWdLrNMRsplA------------------------------------------TI-------------- 395 (481)
T KOG0300|consen 372 VSGSDDRTVKVWDLRNMRSPLA------------------------------------------TI-------------- 395 (481)
T ss_pred eecCCCceEEEeeeccccCcce------------------------------------------ee--------------
Confidence 9999999999999876432110 00
Q ss_pred ceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC--C
Q 002564 410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN--T 487 (907)
Q Consensus 410 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~--~ 487 (907)
...+++..++++..+..+++--.+..|++||+......+.. .....+|...|+|.+|..+. .
T Consensus 396 ------------RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP----rtsRqgHrRMV~c~AW~eehp~c 459 (481)
T KOG0300|consen 396 ------------RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP----RTSRQGHRRMVTCCAWLEEHPAC 459 (481)
T ss_pred ------------ecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCC----cccccccceeeeeeeccccCccc
Confidence 01267888999999999999999999999999865443322 11225899999999997544 3
Q ss_pred EEEEEecCCeEEEEECCCC
Q 002564 488 LMISAGYHGDIKVWDFKGR 506 (907)
Q Consensus 488 ~l~s~~~dg~i~iwd~~~~ 506 (907)
-|+++|.|..+.-|.+...
T Consensus 460 nLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 460 NLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccccccccceeeeeEeccc
Confidence 5789999999999998754
No 114
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.6e-25 Score=221.19 Aligned_cols=299 Identities=17% Similarity=0.316 Sum_probs=238.5
Q ss_pred eeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEE-EE----------------E-cCCCCCEEEEEEcCC
Q 002564 131 GHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKL-YE----------------F-KGWGSSISSCVSSPA 192 (907)
Q Consensus 131 ~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~-~~----------------~-~~h~~~I~~l~~sp~ 192 (907)
..+..|...+.+++++|+. .++++++.+|+|.-|++.+|+.. +. - ++|...|.+++.|+|
T Consensus 136 ~~~~~H~~s~~~vals~d~--~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDD--KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred eeeccccCcceEEEeeccc--cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 4455677778889999999 89999999999999999888744 11 1 267889999999999
Q ss_pred CCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeE
Q 002564 193 LDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAII 272 (907)
Q Consensus 193 ~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 272 (907)
|+|||+|+.|..|.||+.++.+.+..+.+| .+.|.+++|..... -|++++.|+.|++|+++....+.++. +|...|.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~gh-r~~V~~L~fr~gt~-~lys~s~Drsvkvw~~~~~s~vetly-GHqd~v~ 290 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGH-RGAVSSLAFRKGTS-ELYSASADRSVKVWSIDQLSYVETLY-GHQDGVL 290 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhccccc-ccceeeeeeecCcc-ceeeeecCCceEEEehhHhHHHHHHh-CCcccee
Confidence 999999999999999999999999998876 89999999987655 78999999999999999999999998 9999999
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceee
Q 002564 273 SLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSREL 352 (907)
Q Consensus 273 ~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~ 352 (907)
++....-++.+-+|+.|+++++|++...+ + ..+.+|.+.+-|++|-.+ .++++|+.+|.|.+|++.+.+.....
T Consensus 291 ~IdaL~reR~vtVGgrDrT~rlwKi~ees---q--lifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 291 GIDALSRERCVTVGGRDRTVRLWKIPEES---Q--LIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred eechhcccceEEeccccceeEEEeccccc---e--eeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence 99999988888888899999999984332 2 234588899999999854 58999999999999999877766554
Q ss_pred chhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEE
Q 002564 353 SQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTI 432 (907)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~ 432 (907)
...+... .......++..|++++.
T Consensus 365 ~~AHgv~--------------------------------------------------------~~~~~~~~~~Witsla~ 388 (479)
T KOG0299|consen 365 RLAHGVI--------------------------------------------------------PELDPVNGNFWITSLAV 388 (479)
T ss_pred ecccccc--------------------------------------------------------CCccccccccceeeeEe
Confidence 3321100 00001122358999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEE-ecCCeEEEE
Q 002564 433 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVW 501 (907)
Q Consensus 433 s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iw 501 (907)
.|..+.+++|+.+|.|++|-+..+.....+.. ...-.+-|++++|+++|+.+++| +....+--|
T Consensus 389 i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~-----~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 389 IPGSDLLASGSWSGCVRLWKIEDGLRAINLLY-----SLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred cccCceEEecCCCCceEEEEecCCccccceee-----ecccccEEEEEEEccCCCEEEEeccccccccee
Confidence 99999999999999999999988833211110 02467889999999999966554 444444444
No 115
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=1.3e-24 Score=237.93 Aligned_cols=231 Identities=17% Similarity=0.228 Sum_probs=183.6
Q ss_pred EEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEEccCCc-------eEEEEeecCCCCEEEEEEecCCCCEEEEEeCCC
Q 002564 176 EFKGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDE-------ELVTFTHSMRGAVTALAFSSDGQPLLASGASSG 247 (907)
Q Consensus 176 ~~~~h~~~I~~l~~sp-~~~~la~g~~dg~I~iwd~~~~~-------~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg 247 (907)
.+.+|.+.|++++|+| ++++|++|+.||+|++||+.++. .+..+..| ...|.+++|+|++..+|++|+.|+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH-~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH-TKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC-CCcEEEEEeCcCCCCEEEEEeCCC
Confidence 4779999999999999 88999999999999999997653 35556554 789999999998755999999999
Q ss_pred cEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCC-CeEEEEecCC
Q 002564 248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP-PLCIRFYANG 326 (907)
Q Consensus 248 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~-v~~i~~~~~g 326 (907)
.|+|||+.+++....+. +|...|.+++|+|++.+|++++.|+.|++||+... ..+....+|.+. +..+.|.+++
T Consensus 149 tVrIWDl~tg~~~~~l~-~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg----~~v~tl~~H~~~~~~~~~w~~~~ 223 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIK-CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG----TIVSSVEAHASAKSQRCLWAKRK 223 (493)
T ss_pred EEEEEECCCCeEEEEEc-CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC----cEEEEEecCCCCcceEEEEcCCC
Confidence 99999999999888887 89999999999999999999999999999998764 355666788765 4577888888
Q ss_pred CEEEEEe----CCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceE
Q 002564 327 RHILSAG----QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA 402 (907)
Q Consensus 327 ~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v 402 (907)
..+++++ .|+.|++||+++........
T Consensus 224 ~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~------------------------------------------------- 254 (493)
T PTZ00421 224 DLIITLGCSKSQQRQIMLWDTRKMASPYSTV------------------------------------------------- 254 (493)
T ss_pred CeEEEEecCCCCCCeEEEEeCCCCCCceeEe-------------------------------------------------
Confidence 7887765 47899999986533211100
Q ss_pred EEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEE
Q 002564 403 YVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA 481 (907)
Q Consensus 403 ~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 481 (907)
+ ......+....++++++++++|+ .||.|++|++.++....... ..+..++.+++
T Consensus 255 ---~--------------~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~-------~~s~~~~~g~~ 310 (493)
T PTZ00421 255 ---D--------------LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS-------YSSVEPHKGLC 310 (493)
T ss_pred ---c--------------cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee-------ccCCCCCcceE
Confidence 0 01113455667899999999887 59999999999887665543 24556677788
Q ss_pred EcCC
Q 002564 482 CDST 485 (907)
Q Consensus 482 ~s~~ 485 (907)
+.|.
T Consensus 311 ~~pk 314 (493)
T PTZ00421 311 MMPK 314 (493)
T ss_pred eccc
Confidence 7774
No 116
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.7e-24 Score=237.61 Aligned_cols=250 Identities=15% Similarity=0.208 Sum_probs=193.4
Q ss_pred EecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEEccCCc--------eEEEEeecCCCCE
Q 002564 157 GSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDE--------ELVTFTHSMRGAV 227 (907)
Q Consensus 157 ~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~-~~~la~g~~dg~I~iwd~~~~~--------~~~~~~~~~~~~v 227 (907)
|+..+.+++|+......+..+.+|.+.|.+++|+|+ +++||+|+.||.|+|||+.++. .+..+.. |...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcE
Confidence 556788999999888889999999999999999997 7899999999999999998643 2234444 47899
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCccee
Q 002564 228 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL 307 (907)
Q Consensus 228 ~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 307 (907)
.+++|+|++..++++++.|+.|++||+.+++....+. |...|.+++|+|+|.+|++++.|+.|++||+... ..+
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg----~~i 202 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ----EIA 202 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC----cEE
Confidence 9999999998677899999999999999998777765 6678999999999999999999999999998765 455
Q ss_pred EeccCCCCCCeEEE-----EecCCCEEEEEeCCC----CEEEEEceecc-cceeechhhhhHHHhhccchhhhcccCcee
Q 002564 308 RFRSGHSAPPLCIR-----FYANGRHILSAGQDR----AFRLFSVIQDQ-QSRELSQRHVAKRARKLKMKEEELKLKPVI 377 (907)
Q Consensus 308 ~~~~~h~~~v~~i~-----~~~~g~~l~s~~~dg----~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 377 (907)
..+.+|.+.+.... |++++.++++++.|+ .|++||++... ......
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~------------------------ 258 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS------------------------ 258 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE------------------------
Confidence 67788988764433 347888999988774 79999987422 111100
Q ss_pred EeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 002564 378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 457 (907)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~ 457 (907)
. ......+......++|.++++|..|+.|++|++..+.
T Consensus 259 -----------------------------l-------------d~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 259 -----------------------------I-------------DNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred -----------------------------e-------------cCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 0 0111333334445678999999999999999998764
Q ss_pred cceeeeccccccccCcCCcEEEEEEcCCC
Q 002564 458 SRGSYLDMSERSNYAHNGEVVGVACDSTN 486 (907)
Q Consensus 458 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 486 (907)
... +. ...+..++.+++|.|..
T Consensus 297 ~~~-l~------~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 297 IRK-VN------EYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEe-ec------ccccCCCccceEEcccc
Confidence 222 21 12466788899999864
No 117
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=8.1e-25 Score=207.18 Aligned_cols=274 Identities=15% Similarity=0.251 Sum_probs=222.2
Q ss_pred EEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEc
Q 002564 218 TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297 (907)
Q Consensus 218 ~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~ 297 (907)
.+.......|+++.|+|.+. .|++++.||.+++||.....+...+. |..++.+++|.+ ...+++|+.||.|+.+|+
T Consensus 7 ~l~npP~d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSS-DLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDL 82 (323)
T ss_pred ccCCCChhceeeEEEcCcCC-cEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccC-CceEEEeccCceEEEEEe
Confidence 34445567899999998888 66677799999999999987777776 999999999987 457999999999999999
Q ss_pred cCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCcee
Q 002564 298 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 377 (907)
Q Consensus 298 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 377 (907)
.+... .....|..++.|+.+++....+++|+.|++|++||.+.......+.+
T Consensus 83 n~~~~-----~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~----------------------- 134 (323)
T KOG1036|consen 83 NTGNE-----DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ----------------------- 134 (323)
T ss_pred cCCcc-----eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-----------------------
Confidence 87643 33457999999999999778999999999999999876333222211
Q ss_pred EeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 002564 378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 457 (907)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~ 457 (907)
...|.++ +-.|+.|++|+.+..+.+||+.+..
T Consensus 135 ----------------------------------------------~kkVy~~--~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 135 ----------------------------------------------GKKVYCM--DVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred ----------------------------------------------CceEEEE--eccCCEEEEeecCceEEEEEccccc
Confidence 1334444 4458899999999999999998765
Q ss_pred cceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC----ceeeeeecC----------cceeEEEE
Q 002564 458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR----DLKSRWEVG----------CSLVKIVY 523 (907)
Q Consensus 458 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~----------~~i~~~~~ 523 (907)
...... ...-+-.+.++++-|++.-.+.++-||.|.+=.++.. +....++.| .+|++++|
T Consensus 167 ~~~q~r------eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 167 EPFQRR------ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred chhhhc------cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence 544221 1355678999999998888999999999998777655 222333332 68999999
Q ss_pred eeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeC
Q 002564 524 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577 (907)
Q Consensus 524 s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~ 577 (907)
||-.+.+|+|+.||.|.+||+.+.+.+..+......|.+++|+.||..||.++.
T Consensus 241 hp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 241 HPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999999999999999999888888999999999999998874
No 118
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8.6e-25 Score=206.86 Aligned_cols=292 Identities=19% Similarity=0.260 Sum_probs=213.2
Q ss_pred cCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceee--eeee-cccccCeEEEEEecCCCEE-EEEcCCCcEEEEEc
Q 002564 222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ--SVIR-EAHDNAIISLHFFANEPVL-MSASADNSIKMWIF 297 (907)
Q Consensus 222 ~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~--~~~~-~~h~~~V~~l~~~~~~~~l-~s~~~d~~i~vw~~ 297 (907)
+|.+.|++++|+.||+ .|++++.|+.|++|+++..... ..++ .-..+..+.+.|.||.+-+ +++-..+++++|.+
T Consensus 84 gH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred ccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence 4588999999999999 8999999999999999764211 1111 0112345889999998744 44555678999987
Q ss_pred cCCCCCcc--------eeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhh
Q 002564 298 DTTDGDPR--------LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEE 369 (907)
Q Consensus 298 ~~~~~~~~--------~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (907)
...+...- -+.....|..++..+-...++.+|++++.|..|.+|++. ++....+.
T Consensus 163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id---------------- 225 (420)
T KOG2096|consen 163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID---------------- 225 (420)
T ss_pred eecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec----------------
Confidence 65432111 111234567777788778889999999999999999987 44333322
Q ss_pred hcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEE
Q 002564 370 ELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIE 449 (907)
Q Consensus 370 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~ 449 (907)
.+...-+..++||||++++++.-.-.|.
T Consensus 226 ----------------------------------------------------tnq~~n~~aavSP~GRFia~~gFTpDVk 253 (420)
T KOG2096|consen 226 ----------------------------------------------------TNQSSNYDAAVSPDGRFIAVSGFTPDVK 253 (420)
T ss_pred ----------------------------------------------------cccccccceeeCCCCcEEEEecCCCCce
Confidence 1224456789999999999999999999
Q ss_pred EEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC-------ceeeeee-----cCcc
Q 002564 450 RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-------DLKSRWE-----VGCS 517 (907)
Q Consensus 450 i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~-----~~~~ 517 (907)
+|.+--++.-..........+.+|...|..++|+++.+.+++.+.||++++||.+-. +.++... ..+.
T Consensus 254 VwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~ 333 (420)
T KOG2096|consen 254 VWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSE 333 (420)
T ss_pred EEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCC
Confidence 998632211100000011124699999999999999999999999999999997521 2222221 1244
Q ss_pred eeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee-cCCCCeeeEEECCCCcEEEEEeCCCcEEEEE
Q 002564 518 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (907)
Q Consensus 518 i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~-~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd 585 (907)
...+.++|+|+.||++.. ..+++|..++++....++ .|...|++|+|+++|++++|++ |..+++..
T Consensus 334 p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 334 PVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred ceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 558999999999988754 589999999988777765 5899999999999999999986 67788876
No 119
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.1e-23 Score=189.56 Aligned_cols=290 Identities=16% Similarity=0.243 Sum_probs=227.9
Q ss_pred cccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC----------CCCccee-EeccCCCCCCeEEEEecCCCEEEEEeCC
Q 002564 267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTT----------DGDPRLL-RFRSGHSAPPLCIRFYANGRHILSAGQD 335 (907)
Q Consensus 267 h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~----------~~~~~~~-~~~~~h~~~v~~i~~~~~g~~l~s~~~d 335 (907)
....|.+++|+|.|.+.++|+...+.++..+..- ...+..+ +.-+.|.+.|.|.+|+|+|.++++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 5678999999999999999999999998854321 1112222 3335688999999999999999999999
Q ss_pred CCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecce
Q 002564 336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415 (907)
Q Consensus 336 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~ 415 (907)
.+|++.....+.....- +
T Consensus 111 k~ik~l~fn~dt~~~~g--------------------------------------------------------------~ 128 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATG--------------------------------------------------------------H 128 (350)
T ss_pred ceEEEEecccccccccC--------------------------------------------------------------c
Confidence 99999876544332110 0
Q ss_pred eeecCCCCCCceEEEEEcCC----CCEEEEEe-CCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEE
Q 002564 416 ILRPCPENPTAVKACTISAC----GNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI 490 (907)
Q Consensus 416 ~~~~~~~~~~~v~~~~~s~~----g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~ 490 (907)
.+. ..-|.+.|..++|-.+ |..+++++ .|-.|++-|...|+....+. +|.+.|.++. +-+|-+++
T Consensus 129 dle-~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s--------ghtghilaly-swn~~m~~ 198 (350)
T KOG0641|consen 129 DLE-FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS--------GHTGHILALY-SWNGAMFA 198 (350)
T ss_pred cee-eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec--------CCcccEEEEE-EecCcEEE
Confidence 000 0123467777877543 34555544 45688888999999888875 9999998874 44678999
Q ss_pred EEecCCeEEEEECCCCceeeeeecC--------cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeee
Q 002564 491 SAGYHGDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD 562 (907)
Q Consensus 491 s~~~dg~i~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~ 562 (907)
+|+.|.+|++||+.-..++.++... +.+.+++..|.|++|++|..|....+||++.++.++.|..|...|.+
T Consensus 199 sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~ 278 (350)
T KOG0641|consen 199 SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRC 278 (350)
T ss_pred ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeE
Confidence 9999999999999988887776432 67899999999999999999999999999999999999999999999
Q ss_pred EEECCCCcEEEEEeCCCcEEEEEcCCC---c-eeeE-eeeCCceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564 563 FCFSEDGKWLLSSGMDGSLRIWDVILA---R-QIDA-IHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (907)
Q Consensus 563 l~fspdg~~l~s~s~Dg~I~vwd~~~~---~-~~~~-~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (907)
+.|||...|+.+++.|..|++-|++.. + .+.. -++...+..+.|+|..--+++.+.|. ++.+|...
T Consensus 279 vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk-t~tlwa~~ 349 (350)
T KOG0641|consen 279 VRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK-TATLWALN 349 (350)
T ss_pred EEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcc-eEEEeccC
Confidence 999999999999999999999998732 1 1122 23344588899999988888888898 79999853
No 120
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=9.4e-25 Score=227.59 Aligned_cols=283 Identities=19% Similarity=0.328 Sum_probs=232.5
Q ss_pred CeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEE--EEeecCCCCEEE-EEEecCCCCEEEEEeCCC
Q 002564 171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELV--TFTHSMRGAVTA-LAFSSDGQPLLASGASSG 247 (907)
Q Consensus 171 ~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~--~~~~~~~~~v~~-l~fs~dg~~~l~sg~~dg 247 (907)
-+.-+.+.+|..-|..++..+.. .+++++.||++++|+-..++.+. .+..+ .+.|.. ++|-+..+..+++|+.|+
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~-~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGP-KGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccC-cceeeccceeccccCcceEeecccc
Confidence 45677899999999999887665 78999999999999987666544 23333 566655 777753333699999999
Q ss_pred cEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCC
Q 002564 248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR 327 (907)
Q Consensus 248 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~ 327 (907)
+|.+|.+.+..+...+. +|...|.+++...++. +++||.|.++++|... .+...+.+|...|+++...|++
T Consensus 82 ~i~v~~~~~~~P~~~Lk-gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~------~l~~~l~gH~asVWAv~~l~e~- 152 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLK-GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG------ELVYSLQGHTASVWAVASLPEN- 152 (745)
T ss_pred eEEEEecCCCCchhhhh-ccccceeeeecCCcCc-eEecccccceEEecch------hhhcccCCcchheeeeeecCCC-
Confidence 99999999999999999 9999999999888886 9999999999999654 3455578999999999999987
Q ss_pred EEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEe
Q 002564 328 HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL 407 (907)
Q Consensus 328 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~ 407 (907)
.++||+.|.+|++|.-.
T Consensus 153 ~~vTgsaDKtIklWk~~--------------------------------------------------------------- 169 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKGG--------------------------------------------------------------- 169 (745)
T ss_pred cEEeccCcceeeeccCC---------------------------------------------------------------
Confidence 89999999999999631
Q ss_pred eeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCC
Q 002564 408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT 487 (907)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 487 (907)
.....+ .+|.+.|+++++-+++.
T Consensus 170 -------------------------------------------------~~l~tf--------~gHtD~VRgL~vl~~~~ 192 (745)
T KOG0301|consen 170 -------------------------------------------------TLLKTF--------SGHTDCVRGLAVLDDSH 192 (745)
T ss_pred -------------------------------------------------chhhhh--------ccchhheeeeEEecCCC
Confidence 112222 38999999999998764
Q ss_pred EEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECC
Q 002564 488 LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE 567 (907)
Q Consensus 488 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp 567 (907)
+++++.||.|+.|++....+.....+..-+.++....+++.++++++|++++||+.. ++++.+.-..-.|.++.+-+
T Consensus 193 -flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~ 269 (745)
T KOG0301|consen 193 -FLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL 269 (745)
T ss_pred -eEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee
Confidence 789999999999999555555555566889999988899999999999999999987 77777775566899999988
Q ss_pred CCcEEEEEeCCCcEEEEEcCC
Q 002564 568 DGKWLLSSGMDGSLRIWDVIL 588 (907)
Q Consensus 568 dg~~l~s~s~Dg~I~vwd~~~ 588 (907)
+|. |++|+.||.||||....
T Consensus 270 NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 270 NGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CCC-EEEeccCceEEEEEecc
Confidence 886 66788999999998763
No 121
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=3.6e-24 Score=234.52 Aligned_cols=233 Identities=12% Similarity=0.180 Sum_probs=185.8
Q ss_pred EEcccccceEEEEe---eCCEEEEEecCCcEEEEecCCCCc---cccceeeEecCCCcccEEEEcCCCCCCEEEEEecCC
Q 002564 88 TWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEE---NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG 161 (907)
Q Consensus 88 ~~~~h~~~V~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg 161 (907)
.+.||.+.|.++.| ++++|++++.|++|++||+.++.. ...++..+..|...+..+.|+|++. ++|++|+.|+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~Dg 148 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADM 148 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCC
Confidence 37899999999997 468999999999999999987542 1234667778888888999999863 6899999999
Q ss_pred cEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEE
Q 002564 162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA 241 (907)
Q Consensus 162 ~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~ 241 (907)
+|++||+.+++.+..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+..+....+..+.|.+++..++.
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999988887764445667889998873444
Q ss_pred EE---eCCCcEEEEECCCce-eeeeeecccccCeEEEEEecCCCEEEEEc-CCCcEEEEEccCCCCCcceeEe-ccCCCC
Q 002564 242 SG---ASSGVISIWNLEKRR-LQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRF-RSGHSA 315 (907)
Q Consensus 242 sg---~~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~-~~~h~~ 315 (907)
+| +.|+.|++||+++.. ........+...+....|++++++|++++ .|+.|++|++.... +... ...+..
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~----~~~~~~~~s~~ 304 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER----LTFCSSYSSVE 304 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc----eEEEeeccCCC
Confidence 44 247899999998764 33333322344566678899999999887 59999999987542 2222 223556
Q ss_pred CCeEEEEecC
Q 002564 316 PPLCIRFYAN 325 (907)
Q Consensus 316 ~v~~i~~~~~ 325 (907)
++..++|.|.
T Consensus 305 ~~~g~~~~pk 314 (493)
T PTZ00421 305 PHKGLCMMPK 314 (493)
T ss_pred CCcceEeccc
Confidence 7788888874
No 122
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.94 E-value=1.9e-24 Score=221.75 Aligned_cols=168 Identities=16% Similarity=0.240 Sum_probs=130.8
Q ss_pred EEEEEcCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEEccCCceEE-----EEeecCCCCEEEEEEecCCCCEEEEEeCC
Q 002564 173 KLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDEELV-----TFTHSMRGAVTALAFSSDGQPLLASGASS 246 (907)
Q Consensus 173 ~~~~~~~h~~~I~~l~~sp~-~~~la~g~~dg~I~iwd~~~~~~~~-----~~~~~~~~~v~~l~fs~dg~~~l~sg~~d 246 (907)
.+..+.+|+..|+.+.|+|- ..+||+|+.|..|+||.+..|-... ....+.+-.|.++.|+|....+|+++. .
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a-~ 149 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA-H 149 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEecc-C
Confidence 45567899999999999994 4589999999999999998443211 112333558899999997775777765 7
Q ss_pred CcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCC-CeEEEEecC
Q 002564 247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP-PLCIRFYAN 325 (907)
Q Consensus 247 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~-v~~i~~~~~ 325 (907)
|.++|||+.+++.+..+. +|...|.+..|+.||.+|++++.|..|+|||-+... +.++...+|.+. -..+.|..+
T Consensus 150 g~v~i~D~stqk~~~el~-~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~---~piQ~te~H~~~rdsRv~w~Gn 225 (1012)
T KOG1445|consen 150 GSVYITDISTQKTAVELS-GHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASM---EPIQTTEGHGGMRDSRVLWAGN 225 (1012)
T ss_pred ceEEEEEcccCceeeccc-CCchhhhccccccCCceEeeecCCcceEEeCCccCC---Cccccccccccchhheeeeccc
Confidence 899999999999999998 999999999999999999999999999999866543 345555677653 345677766
Q ss_pred CCEEEEEeCC----CCEEEEEcee
Q 002564 326 GRHILSAGQD----RAFRLFSVIQ 345 (907)
Q Consensus 326 g~~l~s~~~d----g~i~iwd~~~ 345 (907)
-..|++.+.+ +.+++||.+.
T Consensus 226 ~~rlisTGF~~~R~reV~~~Dtr~ 249 (1012)
T KOG1445|consen 226 WERLISTGFTTKRIREVRAYDTRK 249 (1012)
T ss_pred hhhhhhcccchhhheeeeeeeccc
Confidence 6677776644 5678888754
No 123
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.5e-24 Score=229.07 Aligned_cols=278 Identities=14% Similarity=0.316 Sum_probs=229.3
Q ss_pred cccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEce
Q 002564 265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (907)
Q Consensus 265 ~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~ 344 (907)
.+|....+.++|.|+|.+|++++.||.|++|+.......+..+. .+...|.+++.. +.+|++|+.+++|.+|.+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~---~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID---ISGELVSSIACY--SNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh---ccCceeEEEeec--ccceEEeeccceEEEeeCC
Confidence 37999999999999999999999999999998765534444432 266777777765 4599999999999999887
Q ss_pred ecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCC
Q 002564 345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 424 (907)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~ 424 (907)
.+..-..+.. ..
T Consensus 85 s~~~~~iL~R--------------------------------------------------------------------ft 96 (933)
T KOG1274|consen 85 SGEEDTILAR--------------------------------------------------------------------FT 96 (933)
T ss_pred CCCccceeee--------------------------------------------------------------------ee
Confidence 6543322110 12
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (907)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 504 (907)
.++++++++.+|++++.|+.|-.|++.++........+. +|.++|.++.++|.+.+||+.+.||.|++||+.
T Consensus 97 lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr--------gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 97 LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR--------GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred ccceEEEEecCCcEEEeecCceeEEEEeccccchheeec--------ccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 678999999999999999999999999999988888875 999999999999999999999999999999999
Q ss_pred CCceeeeeec---------CcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeec--CCCCeeeEEECCCCcEEE
Q 002564 505 GRDLKSRWEV---------GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG--HTDRITDFCFSEDGKWLL 573 (907)
Q Consensus 505 ~~~~~~~~~~---------~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~--h~~~I~~l~fspdg~~l~ 573 (907)
++.+..++.. ...+..++|+|+|..+++.+.|+.|.+|+..++.....+.. |...+..++|||+|+|||
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiA 248 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIA 248 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEe
Confidence 9987766643 25677899999999999999999999999999999888764 445599999999999999
Q ss_pred EEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEee
Q 002564 574 SSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV 627 (907)
Q Consensus 574 s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~ 627 (907)
+++.||.|.|||+++ ...-.....|++++|.|++.-+-.....+ ...+|-
T Consensus 249 As~~~g~I~vWnv~t---~~~~~~~~~Vc~~aw~p~~n~it~~~~~g-~~~~~~ 298 (933)
T KOG1274|consen 249 ASTLDGQILVWNVDT---HERHEFKRAVCCEAWKPNANAITLITALG-TLGVSP 298 (933)
T ss_pred eeccCCcEEEEeccc---chhccccceeEEEecCCCCCeeEEEeecc-ccccCh
Confidence 999999999999998 22223344599999999998877666665 344443
No 124
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.5e-25 Score=204.21 Aligned_cols=255 Identities=18% Similarity=0.251 Sum_probs=212.0
Q ss_pred CCeEEEEEcCc--ceEEEecCCCCcceEEEEEecC---eEEEEEcCe-EEEEeCC---eeEEEEcccccceEEEEe---e
Q 002564 35 GKAFHIYNCAK--LNLVLVGPQLPKKIRALASYRD---YTFAAYGNH-IAVVKRA---HQVATWSRHSAKVNLLLL---F 102 (907)
Q Consensus 35 ~~~v~iwd~~~--~~~~~~~~~~~~~I~~la~~~~---~~~~a~g~~-I~vw~~~---~~~~~~~~h~~~V~~l~~---~ 102 (907)
.|.+.|.++.. +-.+...-.-...+..++++++ ..++|+|+. +++||.. ++++.++.|...|.++.+ .
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~ 116 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVR 116 (311)
T ss_pred CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEecccccc
Confidence 57788888863 3233333345677888999876 445556544 9999953 567889999999999997 4
Q ss_pred CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCC
Q 002564 103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGS 182 (907)
Q Consensus 103 g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~ 182 (907)
+..++++|-|++|++|+..-... +.++..+...+...+|+|... +.+++++.|+++++||++.......+..|..
T Consensus 117 r~~~ltsSWD~TiKLW~~~r~~S----v~Tf~gh~~~Iy~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~ 191 (311)
T KOG0277|consen 117 RRIFLTSSWDGTIKLWDPNRPNS----VQTFNGHNSCIYQAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNS 191 (311)
T ss_pred ceeEEeeccCCceEeecCCCCcc----eEeecCCccEEEEEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccc
Confidence 77888889999999999988777 888999999999999999876 8999999999999999986544445999999
Q ss_pred CEEEEEEcC-CCCEEEEEecCCeEEEEEccCCc-eEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc-ee
Q 002564 183 SISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-RL 259 (907)
Q Consensus 183 ~I~~l~~sp-~~~~la~g~~dg~I~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~-~~ 259 (907)
.|.|+.|+. +.++|++|+.|+.|++||+++-+ ++..+.. |.-.|..++|||....+|++++.|-+++|||...+ ..
T Consensus 192 Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g-h~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~ 270 (311)
T KOG0277|consen 192 EILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNG-HGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA 270 (311)
T ss_pred eeEeecccccCCcEEEecCCCceEEEEehhhccccceeecC-CceEEEEEecCcchhhHhhhccccceEEecccccchhh
Confidence 999999998 45689999999999999999765 4566644 47899999999998889999999999999999855 55
Q ss_pred eeeeecccccCeEEEEEec-CCCEEEEEcCCCcEEEEE
Q 002564 260 QSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWI 296 (907)
Q Consensus 260 ~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~i~vw~ 296 (907)
+.+.. .|+.-|..+.|++ ++.++++++.|..++||+
T Consensus 271 ~e~~~-~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 271 IETVD-HHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hhhhh-ccceEEeccccccccCceeeecccccceeeec
Confidence 55565 8999999999998 456999999999999996
No 125
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=2.8e-25 Score=222.14 Aligned_cols=281 Identities=16% Similarity=0.253 Sum_probs=237.4
Q ss_pred CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCC---ceEEEEeec-CCCCEEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 002564 179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYD---EELVTFTHS-MRGAVTALAFSSDGQPLLASGASSGVISIWNL 254 (907)
Q Consensus 179 ~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~---~~~~~~~~~-~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~ 254 (907)
.|+.-|.++++|...+++.+|+. |.|+|||+... ..+..+..- ....|.++...|||+ -|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr-tLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR-TLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc-eEEeccccceeeeeec
Confidence 46778888899999999999986 88999999743 233333322 246899999999999 7888988999999999
Q ss_pred CCceee--eeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEE
Q 002564 255 EKRRLQ--SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA 332 (907)
Q Consensus 255 ~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~ 332 (907)
...... ..+. ...-...+++.+||.+..+++..||.|.|||+... .+++.+.||.+.+.||..++||..|.+|
T Consensus 495 AapTprikaelt-ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq----~~VrqfqGhtDGascIdis~dGtklWTG 569 (705)
T KOG0639|consen 495 AAPTPRIKAELT-SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISKDGTKLWTG 569 (705)
T ss_pred cCCCcchhhhcC-CcchhhhhhhcCCccceeeeeccCCcEEEEEcccc----eeeecccCCCCCceeEEecCCCceeecC
Confidence 876443 3333 33346788999999999999999999999999866 6789999999999999999999999999
Q ss_pred eCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeecee
Q 002564 333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL 412 (907)
Q Consensus 333 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~ 412 (907)
+.|.+||.||++++.+..+..
T Consensus 570 GlDntvRcWDlregrqlqqhd----------------------------------------------------------- 590 (705)
T KOG0639|consen 570 GLDNTVRCWDLREGRQLQQHD----------------------------------------------------------- 590 (705)
T ss_pred CCccceeehhhhhhhhhhhhh-----------------------------------------------------------
Confidence 999999999998776554321
Q ss_pred cceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEE
Q 002564 413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA 492 (907)
Q Consensus 413 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 492 (907)
..+.|.++..+|.+.++++|-.++.+.+........... .-|.+.|.++.|.+.|+++++.
T Consensus 591 ----------F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyql---------hlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 591 ----------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQL---------HLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred ----------hhhhheecccCCCccceeeecccCcEEEEecCCccceee---------cccccEEEEEEecccCceeeec
Confidence 126788899999999999999999999988765544332 3699999999999999999999
Q ss_pred ecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEc
Q 002564 493 GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV 544 (907)
Q Consensus 493 ~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~ 544 (907)
|.|..+..|...-|..+...+..++|.++.+|.|++++++|+.|....||.+
T Consensus 652 GkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 652 GKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred CchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999999988888888899999999999999999999998888865
No 126
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.1e-24 Score=204.22 Aligned_cols=300 Identities=14% Similarity=0.218 Sum_probs=219.7
Q ss_pred EEEEcccccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcE
Q 002564 86 VATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSL 163 (907)
Q Consensus 86 ~~~~~~h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i 163 (907)
+..++||...|++++| ||++|++++.|++|++|++.+.+......-......+-...+.|.||.. ..++..-...++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~-s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCK-SVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcc-eEEEEEccCCEE
Confidence 3348999999999998 7999999999999999999875542111112223334456788999984 344445556689
Q ss_pred EEEecCC---CeEEE---------EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEE
Q 002564 164 QLWNIST---KKKLY---------EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231 (907)
Q Consensus 164 ~iwd~~~---~~~~~---------~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~ 231 (907)
++|-... |...+ .-+.|...|..+-....+.+|++++.|..|.+|+++ |+.+..+... ...-+..+
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn-q~~n~~aa 235 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN-QSSNYDAA 235 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc-ccccccee
Confidence 9997632 22211 123467778888888889999999999999999999 9988888765 56678899
Q ss_pred EecCCCCEEEEEeCCCcEEEEECC---Cc-----eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC
Q 002564 232 FSSDGQPLLASGASSGVISIWNLE---KR-----RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (907)
Q Consensus 232 fs~dg~~~l~sg~~dg~I~iwd~~---~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 303 (907)
.||+|+ ++++++..-.|++|.+- .| ..+..+. +|...|..++|+++...+++.+.||++++||.+..-.
T Consensus 236 vSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk-GH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~- 312 (420)
T KOG2096|consen 236 VSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK-GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE- 312 (420)
T ss_pred eCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheec-cchhheeeeeeCCCcceeEEEecCCcEEEeeccceEe-
Confidence 999999 88888888899999863 22 3445566 9999999999999999999999999999998764310
Q ss_pred cceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecc
Q 002564 304 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 383 (907)
Q Consensus 304 ~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 383 (907)
.+. |.+.|=.++ +-+-
T Consensus 313 -------~~q-----------Dpk~Lk~g~----~pl~------------------------------------------ 328 (420)
T KOG2096|consen 313 -------AGQ-----------DPKILKEGS----APLH------------------------------------------ 328 (420)
T ss_pred -------cCC-----------CchHhhcCC----cchh------------------------------------------
Confidence 000 111110100 0000
Q ss_pred cccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeee
Q 002564 384 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 463 (907)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~ 463 (907)
...+....++++|.|+.+++. ....+++|....|+....+.
T Consensus 329 --------------------------------------aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e 369 (420)
T KOG2096|consen 329 --------------------------------------AAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELE 369 (420)
T ss_pred --------------------------------------hcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHH
Confidence 000223367888888887775 34578899988888877776
Q ss_pred ccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564 464 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (907)
Q Consensus 464 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 502 (907)
..|...|.+++|+++|++++++| |..+++..
T Consensus 370 -------~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 370 -------DIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred -------HhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 58999999999999999999998 46777765
No 127
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.9e-23 Score=229.31 Aligned_cols=228 Identities=15% Similarity=0.164 Sum_probs=180.9
Q ss_pred EecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe--------EEEEEcCC
Q 002564 109 IDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK--------KLYEFKGW 180 (907)
Q Consensus 109 ~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~--------~~~~~~~h 180 (907)
|+.++.|++|+...... +..+..|...+..+.|+|... ++|++|+.||+|++||+.++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~----v~~L~gH~~~V~~lafsP~~~-~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP----VIKLKGHTSSILDLQFNPCFS-EILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCce----EEEEcCCCCCEEEEEEcCCCC-CEEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 55678899999876543 777888888999999999732 789999999999999997642 34578899
Q ss_pred CCCEEEEEEcCCCCE-EEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCcee
Q 002564 181 GSSISSCVSSPALDV-VAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL 259 (907)
Q Consensus 181 ~~~I~~l~~sp~~~~-la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~ 259 (907)
...|.+++|+|++.. +++|+.||.|+|||+++++.+..+.. ...|.+++|+|+|. +|++++.|+.|+|||+++++.
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~--~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM--PKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEI 201 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec--CCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcE
Confidence 999999999999875 57899999999999999988777753 47899999999999 889999999999999999999
Q ss_pred eeeeecccccCeEEE-----EEecCCCEEEEEcCCC----cEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEE
Q 002564 260 QSVIREAHDNAIISL-----HFFANEPVLMSASADN----SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL 330 (907)
Q Consensus 260 ~~~~~~~h~~~V~~l-----~~~~~~~~l~s~~~d~----~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~ 330 (907)
+..+. +|.+.+.+. .|++++.++++++.|+ .|++||++.... +........+.+.+......++|.+++
T Consensus 202 i~tl~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~-pl~~~~ld~~~~~L~p~~D~~tg~l~l 279 (568)
T PTZ00420 202 ASSFH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS-ALVTMSIDNASAPLIPHYDESTGLIYL 279 (568)
T ss_pred EEEEe-cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC-ceEEEEecCCccceEEeeeCCCCCEEE
Confidence 98887 898765433 3457888999988774 799999875432 222223333334333333444688999
Q ss_pred EEeCCCCEEEEEceec
Q 002564 331 SAGQDRAFRLFSVIQD 346 (907)
Q Consensus 331 s~~~dg~i~iwd~~~~ 346 (907)
+|+.|+.|++|++..+
T Consensus 280 sGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 280 IGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEECCCeEEEEEccCC
Confidence 9999999999998654
No 128
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=5e-23 Score=219.01 Aligned_cols=284 Identities=13% Similarity=0.155 Sum_probs=217.7
Q ss_pred EEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEE-EEEcCCCcEEEEEccCCCCCcceeEeccCCCCCC
Q 002564 239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 317 (907)
Q Consensus 239 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v 317 (907)
++++++.|+.|.+||+.+++.+..+. .+. .+.+++|+|++..+ ++++.++.|++|+.... .....+..+. .+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~-~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~~~~~-~~ 75 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFP-VGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATG----EVIGTLPSGP-DP 75 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEE-CCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCC----cEEEeccCCC-Cc
Confidence 78899999999999999999888887 443 46789999999876 56778899999987654 2333333333 35
Q ss_pred eEEEEecCCCEEEEE-eCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEe
Q 002564 318 LCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH 396 (907)
Q Consensus 318 ~~i~~~~~g~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 396 (907)
..++|+|+++.++++ +.++.+++||+.+.+....+.
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~------------------------------------------- 112 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP------------------------------------------- 112 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-------------------------------------------
Confidence 678999999877654 568999999986543322211
Q ss_pred eCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCccceeeeccccccccCcCC
Q 002564 397 MDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG-WIERFNLQSGISRGSYLDMSERSNYAHNG 475 (907)
Q Consensus 397 ~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 475 (907)
....+.+++++|+|++++++..++ .+..|+..++....... ...
T Consensus 113 --------------------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~---------~~~ 157 (300)
T TIGR03866 113 --------------------------VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL---------VDQ 157 (300)
T ss_pred --------------------------CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE---------cCC
Confidence 013356799999999999988875 56778988776654432 223
Q ss_pred cEEEEEEcCCCCEEEEE-ecCCeEEEEECCCCceeeeeecC--------cceeEEEEeeCCCEEEEE-eCCCeEEEEEcc
Q 002564 476 EVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATV-ADDLVIRLFDVV 545 (907)
Q Consensus 476 ~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~-~~dg~I~v~d~~ 545 (907)
.+.+++|+|++++++.+ ..++.|++||+.+++....+... .....++|+|++++++++ ..++.+.+||..
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 45779999999988554 46899999999998877665432 123468899999986554 456789999999
Q ss_pred cceeEEEeecCCCCeeeEEECCCCcEEEEE-eCCCcEEEEEcCCCceeeEeeeCCceEEEEECC
Q 002564 546 ALRMVRKFEGHTDRITDFCFSEDGKWLLSS-GMDGSLRIWDVILARQIDAIHVDVSITALSLSP 608 (907)
Q Consensus 546 ~~~~~~~~~~h~~~I~~l~fspdg~~l~s~-s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~sp 608 (907)
+++.+..+. +...+.+++|+|+|++|+++ +.++.|++||+.+++++..++....+++++++|
T Consensus 238 ~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 238 TYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred CCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 988876654 44579999999999999876 468999999999999999999888889999876
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=7.3e-23 Score=217.76 Aligned_cols=294 Identities=11% Similarity=0.119 Sum_probs=220.6
Q ss_pred CEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEEccCCceEEEEeecCCCCEEEE
Q 002564 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVV-AVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL 230 (907)
Q Consensus 152 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~l-a~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l 230 (907)
+.+++++.|+.|.+||..+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||..+++.+..+..+ ..+..+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~ 78 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG--PDPELF 78 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC--CCccEE
Confidence 468889999999999999999999998754 46789999999876 56677899999999998887766544 346788
Q ss_pred EEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCC-cEEEEEccCCCCCcceeEe
Q 002564 231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN-SIKMWIFDTTDGDPRLLRF 309 (907)
Q Consensus 231 ~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~-~i~vw~~~~~~~~~~~~~~ 309 (907)
+|+|+++.++++++.++.|++||+.+++.+..+. +...+.+++|+|++.++++++.++ .+..|+.... .....
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~----~~~~~ 152 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY----EIVDN 152 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC----eEEEE
Confidence 9999998444555678999999999988877775 334578899999999999888765 4566776543 22222
Q ss_pred ccCCCCCCeEEEEecCCCEEEEE-eCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeeccccccc
Q 002564 310 RSGHSAPPLCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD 388 (907)
Q Consensus 310 ~~~h~~~v~~i~~~~~g~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 388 (907)
. .....+.++.|+|++++++.+ ..++.+++||+.+++....+...
T Consensus 153 ~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~--------------------------------- 198 (300)
T TIGR03866 153 V-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE--------------------------------- 198 (300)
T ss_pred E-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec---------------------------------
Confidence 2 123356789999999988654 46899999999776543332110
Q ss_pred ccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCccceeeecccc
Q 002564 389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMSE 467 (907)
Q Consensus 389 ~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~~~ 467 (907)
.. ...........++++|+|++++++ ..++.+.+||+.+++.....
T Consensus 199 --------------------~~--------~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~----- 245 (300)
T TIGR03866 199 --------------------IP--------GVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL----- 245 (300)
T ss_pred --------------------cc--------ccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-----
Confidence 00 000001234468899999986654 45678999999988776544
Q ss_pred ccccCcCCcEEEEEEcCCCCEEEEE-ecCCeEEEEECCCCceeeeeecCcceeEEEEee
Q 002564 468 RSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR 525 (907)
Q Consensus 468 ~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~ 525 (907)
.+...+.+++|+|++++|+++ +.+|.|++||+.+++.+..++.+.....++++|
T Consensus 246 ----~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 246 ----LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred ----EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 234578899999999999876 468999999999999999998888788888765
No 130
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.2e-23 Score=199.42 Aligned_cols=277 Identities=16% Similarity=0.230 Sum_probs=215.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCcee
Q 002564 180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL 259 (907)
Q Consensus 180 h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~ 259 (907)
....|+.+.|+|.++.|++++.||.+++|+.........+.. ..++.+++|.++.+ +++|+.||.|+.+|+.++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~--~~plL~c~F~d~~~--~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH--GAPLLDCAFADEST--IVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheec--CCceeeeeccCCce--EEEeccCceEEEEEecCCcc
Confidence 367899999999999999999999999999998876666665 58999999998765 88999999999999999877
Q ss_pred eeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEE
Q 002564 260 QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR 339 (907)
Q Consensus 260 ~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~ 339 (907)
...- .|..+|.++.+++....+++||.|++|++||..... ..... .....|.++.. .|..|+.|+.|..+.
T Consensus 88 ~~ig--th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~----~~~~~-d~~kkVy~~~v--~g~~LvVg~~~r~v~ 158 (323)
T KOG1036|consen 88 DQIG--THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV----VVGTF-DQGKKVYCMDV--SGNRLVVGTSDRKVL 158 (323)
T ss_pred eeec--cCCCceEEEEeeccCCeEEEcccCccEEEEeccccc----ccccc-ccCceEEEEec--cCCEEEEeecCceEE
Confidence 6554 599999999999988899999999999999876421 12111 22336666665 467899999999999
Q ss_pred EEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeec
Q 002564 340 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP 419 (907)
Q Consensus 340 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~ 419 (907)
+||+++........
T Consensus 159 iyDLRn~~~~~q~r------------------------------------------------------------------ 172 (323)
T KOG1036|consen 159 IYDLRNLDEPFQRR------------------------------------------------------------------ 172 (323)
T ss_pred EEEcccccchhhhc------------------------------------------------------------------
Confidence 99998654332110
Q ss_pred CCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----ccceeeeccccc-cccCcCCcEEEEEEcCCCCEEEEEec
Q 002564 420 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG----ISRGSYLDMSER-SNYAHNGEVVGVACDSTNTLMISAGY 494 (907)
Q Consensus 420 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~----~~~~~~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~~~ 494 (907)
...-...++|+++-|++.=.++++-+|+|.+=.+... .....|.-.... ....--.+|++|+|+|-...++|||.
T Consensus 173 eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGs 252 (323)
T KOG1036|consen 173 ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGS 252 (323)
T ss_pred cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCC
Confidence 0011267899999999999999999999887555443 222223210000 00011247999999999999999999
Q ss_pred CCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeC
Q 002564 495 HGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD 535 (907)
Q Consensus 495 dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~ 535 (907)
||.|.+||..+.+.+..+..- ..|..++|+.+|..||+++.
T Consensus 253 DG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 253 DGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999998887777544 77999999999999999975
No 131
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=9.1e-24 Score=216.21 Aligned_cols=319 Identities=14% Similarity=0.227 Sum_probs=242.3
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEE
Q 002564 173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW 252 (907)
Q Consensus 173 ~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iw 252 (907)
+-..+.+|.+.|.|+...|.|.+||+|+.||+|+||.+.+|.++.++... +.|.|++|+|.+..-+++......+.|-
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d--~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD--SEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec--ceeEEEEecCCCCceeEEEEecCceEEe
Confidence 34567899999999999999999999999999999999999999999875 7899999999876434444444457777
Q ss_pred ECCCceeeeeeecccccCeEEEEEecCCCEEEEE----cCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCE
Q 002564 253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA----SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH 328 (907)
Q Consensus 253 d~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~----~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~ 328 (907)
+..-|..+.... ....|+++ ..++.+..|.-...+....-++..-.|...|..+.|+..|.|
T Consensus 470 np~~G~~~e~~~--------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDY 535 (733)
T KOG0650|consen 470 NPIFGDRLEVGP--------------TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDY 535 (733)
T ss_pred Cccccchhhhcc--------------hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCce
Confidence 655442221111 01112221 235678888544322222224445578999999999999999
Q ss_pred EEEEeCC---CCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEE
Q 002564 329 ILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 405 (907)
Q Consensus 329 l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w 405 (907)
|++...+ ..|.|.++......
T Consensus 536 latV~~~~~~~~VliHQLSK~~sQ-------------------------------------------------------- 559 (733)
T KOG0650|consen 536 LATVMPDSGNKSVLIHQLSKRKSQ-------------------------------------------------------- 559 (733)
T ss_pred EEEeccCCCcceEEEEeccccccc--------------------------------------------------------
Confidence 9987654 34556555432211
Q ss_pred EeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCC
Q 002564 406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST 485 (907)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 485 (907)
.+.....+.+.++.|+|...++++++.. .|++||+..+..+..+. .....|..++++|.
T Consensus 560 ------------~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~--------tg~kwiS~msihp~ 618 (733)
T KOG0650|consen 560 ------------SPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLL--------TGSKWISSMSIHPN 618 (733)
T ss_pred ------------CchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHh--------cCCeeeeeeeecCC
Confidence 1111234789999999999999998764 69999999988777764 55678999999999
Q ss_pred CCEEEEEecCCeEEEEECCCC-ceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEc------ccc---eeEEEee
Q 002564 486 NTLMISAGYHGDIKVWDFKGR-DLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDV------VAL---RMVRKFE 554 (907)
Q Consensus 486 ~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~------~~~---~~~~~~~ 554 (907)
|.-|+.++.|+.+..+|+.-. ++.+++.++ ..+++++||+.-.++|+|++||++.||-- ... -++..+.
T Consensus 619 GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~ 698 (733)
T KOG0650|consen 619 GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR 698 (733)
T ss_pred CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc
Confidence 999999999999999999844 556666555 78999999999999999999999999842 222 3467888
Q ss_pred cCCCC----eeeEEECCCCcEEEEEeCCCcEEEE
Q 002564 555 GHTDR----ITDFCFSEDGKWLLSSGMDGSLRIW 584 (907)
Q Consensus 555 ~h~~~----I~~l~fspdg~~l~s~s~Dg~I~vw 584 (907)
||... |.++.|+|.-.||++++.||+|++|
T Consensus 699 gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 699 GHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CceeecccceEeecccCCCceEEecCCCceEEee
Confidence 99766 8999999999999999999999998
No 132
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.5e-20 Score=202.94 Aligned_cols=245 Identities=16% Similarity=0.247 Sum_probs=199.0
Q ss_pred cccccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEe
Q 002564 90 SRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWN 167 (907)
Q Consensus 90 ~~h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd 167 (907)
.+|+..-+.|++ +|.+|++|+.||.|++|+..+.+.. ...+..+...+..+ .-.. +++++|+.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~---P~ti~~~g~~v~~i--a~~s--~~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE---PETIDISGELVSSI--ACYS--NHFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC---CchhhccCceeEEE--eecc--cceEEeeccceEEEee
Confidence 468888888886 6999999999999999998776321 23333233333333 3333 6799999999999999
Q ss_pred cCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCC
Q 002564 168 ISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG 247 (907)
Q Consensus 168 ~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg 247 (907)
+.+++.-..+....-++++++++-+|+++|.|+.|-.|++.++.+......+..+ .++|.++.|+|.+. +||+.+-||
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-~apVl~l~~~p~~~-fLAvss~dG 160 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-DAPVLQLSYDPKGN-FLAVSSCDG 160 (933)
T ss_pred CCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-CCceeeeeEcCCCC-EEEEEecCc
Confidence 9988776666666789999999999999999999999999999999888888876 89999999999999 999999999
Q ss_pred cEEEEECCCceeeeeeec------c-cccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEE
Q 002564 248 VISIWNLEKRRLQSVIRE------A-HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320 (907)
Q Consensus 248 ~I~iwd~~~~~~~~~~~~------~-h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i 320 (907)
.|++||+.++.+..++.. . ....+..++|+|++..++..+.|+.|++|+........ .-....+...+..+
T Consensus 161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f--~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQF--KLRDKLSSSKFSDL 238 (933)
T ss_pred eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehe--eecccccccceEEE
Confidence 999999999988777651 1 14567789999998889999999999999765543222 22223344559999
Q ss_pred EEecCCCEEEEEeCCCCEEEEEcee
Q 002564 321 RFYANGRHILSAGQDRAFRLFSVIQ 345 (907)
Q Consensus 321 ~~~~~g~~l~s~~~dg~i~iwd~~~ 345 (907)
+|+|+|+||++++.||.|.+||+.+
T Consensus 239 ~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 239 QWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEcCCCcEEeeeccCCcEEEEeccc
Confidence 9999999999999999999999986
No 133
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=2.7e-23 Score=194.63 Aligned_cols=300 Identities=16% Similarity=0.257 Sum_probs=230.0
Q ss_pred cCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEEccCCc----------eEEEEe----ecCCCCEEEEEEecCCCCEEEE
Q 002564 178 KGWGSSISSCVSSP-ALDVVAVGCSDGKIHVHNVRYDE----------ELVTFT----HSMRGAVTALAFSSDGQPLLAS 242 (907)
Q Consensus 178 ~~h~~~I~~l~~sp-~~~~la~g~~dg~I~iwd~~~~~----------~~~~~~----~~~~~~v~~l~fs~dg~~~l~s 242 (907)
..|.+.|+++...+ .|+++++|+.||.|.+||+++.. .+..+. ..|+-.|.++.|-|-..-++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46889999999988 58899999999999999998543 111111 2345689999999976668999
Q ss_pred EeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCC---CEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeE
Q 002564 243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE---PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC 319 (907)
Q Consensus 243 g~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~ 319 (907)
++.|.+++|||..+.+....+. -.+.|++-+++|=. .++++|..|-.|++.|+..+ .+...+.||.+.|.+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG----s~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG----SFSHTLSGHRDGVLA 193 (397)
T ss_pred ccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC----cceeeeccccCceEE
Confidence 9999999999999998888876 67788888888843 37788888999999998776 467788899999999
Q ss_pred EEEecCCCE-EEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeC
Q 002564 320 IRFYANGRH-ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMD 398 (907)
Q Consensus 320 i~~~~~g~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 398 (907)
+.|+|...+ |++|+.||.+++||++..
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRra---------------------------------------------------- 221 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRA---------------------------------------------------- 221 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeecc----------------------------------------------------
Confidence 999996654 668999999999998642
Q ss_pred CceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEE
Q 002564 399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 478 (907)
Q Consensus 399 ~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~ 478 (907)
.|..++.|...++...... ...+|.+.|.
T Consensus 222 ----------------------------------------------sgcf~~lD~hn~k~~p~~~-----~n~ah~gkvn 250 (397)
T KOG4283|consen 222 ----------------------------------------------SGCFRVLDQHNTKRPPILK-----TNTAHYGKVN 250 (397)
T ss_pred ----------------------------------------------cceeEEeecccCccCcccc-----ccccccceee
Confidence 1122222322221111111 1148999999
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeec---CcceeEEEE---eeCCCEEEEEeCCCeEEEEEcccceeEEE
Q 002564 479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV---GCSLVKIVY---HRVNGLLATVADDLVIRLFDVVALRMVRK 552 (907)
Q Consensus 479 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~i~~~~~---s~~~~~la~~~~dg~I~v~d~~~~~~~~~ 552 (907)
+++|+.++.++++++.|..+++|+..+|+....-.. +..-...++ +.+...++.--.++.+.++++-.+..++.
T Consensus 251 gla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~ 330 (397)
T KOG4283|consen 251 GLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRR 330 (397)
T ss_pred eeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEe
Confidence 999999999999999999999999988753221111 011111111 33444555555668999999999999999
Q ss_pred eecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEc
Q 002564 553 FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586 (907)
Q Consensus 553 ~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~ 586 (907)
+.+|-..|.+.++-|+=+...+++.|+.|..|-.
T Consensus 331 l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 331 LSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eecccceeeEEeecCchhhhhccccCCccccccc
Confidence 9999999999999999999999999999999975
No 134
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.8e-24 Score=194.16 Aligned_cols=235 Identities=20% Similarity=0.275 Sum_probs=191.3
Q ss_pred CEEEEEecCCcEEEEecCCC---eEEEEEcCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEEccCCce--EEEEeecCC
Q 002564 152 NKVIVGSQEGSLQLWNISTK---KKLYEFKGWGSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEE--LVTFTHSMR 224 (907)
Q Consensus 152 ~~l~~~s~dg~i~iwd~~~~---~~~~~~~~h~~~I~~l~~sp--~~~~la~g~~dg~I~iwd~~~~~~--~~~~~~~~~ 224 (907)
++|++++.|++|+|+.++++ +++.++.||.++|..++|.. -|.+||+++.||.|.||.-.+++- ...+.. |.
T Consensus 24 krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~-h~ 102 (299)
T KOG1332|consen 24 KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAA-HS 102 (299)
T ss_pred ceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhh-hc
Confidence 89999999999999998754 57889999999999999976 799999999999999999887752 233333 47
Q ss_pred CCEEEEEEecCCC-CEEEEEeCCCcEEEEECCCc--eeeeeeecccccCeEEEEEecC---C-----------CEEEEEc
Q 002564 225 GAVTALAFSSDGQ-PLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLHFFAN---E-----------PVLMSAS 287 (907)
Q Consensus 225 ~~v~~l~fs~dg~-~~l~sg~~dg~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~~~~---~-----------~~l~s~~ 287 (907)
..|++++|.|.+- .+|++++.||.|.|.+.++. -....+..+|.-.|++++|.|. | +.|++|+
T Consensus 103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG 182 (299)
T KOG1332|consen 103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG 182 (299)
T ss_pred ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC
Confidence 8999999999742 47899999999999988654 3444455589999999999985 4 4699999
Q ss_pred CCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecC----CCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhh
Q 002564 288 ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN----GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 363 (907)
Q Consensus 288 ~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~----g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 363 (907)
.|+.|+||+++.. .+...+.+.+|.+.|..++|.|. ..++++|++||++.+|.........+
T Consensus 183 cDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk------------ 248 (299)
T KOG1332|consen 183 CDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK------------ 248 (299)
T ss_pred CccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc------------
Confidence 9999999998765 55666778999999999999994 35899999999999998653221111
Q ss_pred ccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe
Q 002564 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (907)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 443 (907)
...+ ...+..+..+.||..|+.|++++
T Consensus 249 --------------------------------------------------~tll---~~f~~~~w~vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 249 --------------------------------------------------KTLL---EEFPDVVWRVSWSLSGNILAVSG 275 (299)
T ss_pred --------------------------------------------------cccc---ccCCcceEEEEEeccccEEEEec
Confidence 0111 12347799999999999999999
Q ss_pred CCCcEEEEeCC
Q 002564 444 AGGWIERFNLQ 454 (907)
Q Consensus 444 ~dg~i~i~d~~ 454 (907)
.|+.|.+|.-.
T Consensus 276 GdNkvtlwke~ 286 (299)
T KOG1332|consen 276 GDNKVTLWKEN 286 (299)
T ss_pred CCcEEEEEEeC
Confidence 99999999754
No 135
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.1e-21 Score=211.33 Aligned_cols=494 Identities=17% Similarity=0.217 Sum_probs=316.6
Q ss_pred EEecCeEE--EEEcCeEEEEeC--CeeEEEEcccccceEEEEee-----CCEEEEEecCCcEEEEecCCCCccccceeeE
Q 002564 63 ASYRDYTF--AAYGNHIAVVKR--AHQVATWSRHSAKVNLLLLF-----GEHILSIDIDGNMFIWAFKGIEENLAPVGHV 133 (907)
Q Consensus 63 a~~~~~~~--~a~g~~I~vw~~--~~~~~~~~~h~~~V~~l~~~-----g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~ 133 (907)
.|++|.++ +.+++.|.||.. +.++..+.+|..+++.+..+ -.++++++.||.|++||...+.+ ++++
T Consensus 23 vfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L----lkt~ 98 (792)
T KOG1963|consen 23 VFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL----LKTF 98 (792)
T ss_pred ccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE----EEEE
Confidence 47888555 466888999974 55566799999999999863 26788999999999999999988 5555
Q ss_pred ecCCCcccEEEEcCCCCC-CEEE-EEecCC------------cEEEEecCC--CeEEEEEcCCCCCEEEEEEcCCCCEEE
Q 002564 134 KLDDKFTPTCIMHPDTYL-NKVI-VGSQEG------------SLQLWNIST--KKKLYEFKGWGSSISSCVSSPALDVVA 197 (907)
Q Consensus 134 ~~~~~~~~~~~~~p~~~~-~~l~-~~s~dg------------~i~iwd~~~--~~~~~~~~~h~~~I~~l~~sp~~~~la 197 (907)
..+.... ...+.|.-.. ...+ .+..+. +++-+.+.+ ......++.|.. -.++.+++.|.+.+
T Consensus 99 ~~~~~v~-~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~ 176 (792)
T KOG1963|consen 99 DNNLPVH-ALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKG 176 (792)
T ss_pred ecCCcee-EEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEE
Confidence 4432221 1111111000 0111 111111 111111111 111111223322 46788888888776
Q ss_pred EEecCCeEEEEEccCCceE---EEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCC---ceeeeeeecccccCe
Q 002564 198 VGCSDGKIHVHNVRYDEEL---VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK---RRLQSVIREAHDNAI 271 (907)
Q Consensus 198 ~g~~dg~I~iwd~~~~~~~---~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~---~~~~~~~~~~h~~~V 271 (907)
.... ..+.+|+..++... +....+|...+++.+++|.++ ++|+|..||.|.+|.--. .....++-.-|...|
T Consensus 177 i~~~-~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V 254 (792)
T KOG1963|consen 177 IVHM-CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEV 254 (792)
T ss_pred EEEe-eeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEeccccccccccceEEEeccccc
Confidence 6654 56899998875511 112234566789999999999 999999999999996332 233333333688899
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceeccccee
Q 002564 272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRE 351 (907)
Q Consensus 272 ~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~ 351 (907)
.+++|+++|.+|++||..+.+.+|.+.++. .+.+ ..-.++|..+.++||+.+.+....|+.|.+....+......
T Consensus 255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfL---PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t 329 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFL---PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST 329 (792)
T ss_pred ceeEEecCCceEeecccceEEEEEeecCCC--cccc---cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence 999999999999999999999999887664 2333 34568999999999999999999999999988755444333
Q ss_pred echhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEE
Q 002564 352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT 431 (907)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~ 431 (907)
++....... ........-.+.++
T Consensus 330 Isgi~~~~~---------------------------------------------------------~~k~~~~~l~t~~~ 352 (792)
T KOG1963|consen 330 ISGIKPPTP---------------------------------------------------------STKTRPQSLTTGVS 352 (792)
T ss_pred ccCccCCCc---------------------------------------------------------cccccccccceeEE
Confidence 322100000 00011225577889
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccc--c-CcCCcEEEEEEcCCCCEEEEEe--------c--CCeE
Q 002564 432 ISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSN--Y-AHNGEVVGVACDSTNTLMISAG--------Y--HGDI 498 (907)
Q Consensus 432 ~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~-~h~~~v~~l~~s~~~~~l~s~~--------~--dg~i 498 (907)
++|.-+.++..+..|+|++||+.+...+..+........ . .+...++.++.+..|.+++|.- . .-.+
T Consensus 353 idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~L 432 (792)
T KOG1963|consen 353 IDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSL 432 (792)
T ss_pred EcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEE
Confidence 999888888899999999999998877765542211110 1 2344578888888899998874 2 2358
Q ss_pred EEEECCCCce----eeee--ecCcceeEEEEe-eC-CCEEEEEeCCCeEEEEEcccc----------eeEEEeecCCCCe
Q 002564 499 KVWDFKGRDL----KSRW--EVGCSLVKIVYH-RV-NGLLATVADDLVIRLFDVVAL----------RMVRKFEGHTDRI 560 (907)
Q Consensus 499 ~iwd~~~~~~----~~~~--~~~~~i~~~~~s-~~-~~~la~~~~dg~I~v~d~~~~----------~~~~~~~~h~~~I 560 (907)
++|-...... ...+ +++..+...++. +. ....++++.||.++||-+... .+...-.-|..++
T Consensus 433 KFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i 512 (792)
T KOG1963|consen 433 KFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPI 512 (792)
T ss_pred EEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcc
Confidence 8998765433 2222 233333444443 33 338899999999999988332 2332222378999
Q ss_pred eeEEECCCCcEEEEEeCCCcEEEEEcCC-CceeeEeeeCC-ceEEEEECC----CCceEEEEEecCCeEEEeeccc
Q 002564 561 TDFCFSEDGKWLLSSGMDGSLRIWDVIL-ARQIDAIHVDV-SITALSLSP----NMDVLATAHVDQNGVYLWVNRC 630 (907)
Q Consensus 561 ~~l~fspdg~~l~s~s~Dg~I~vwd~~~-~~~~~~~~~~~-~v~~l~~sp----dg~~lat~~~d~~~i~lW~~~~ 630 (907)
++++|+.||..|+ ++.|++|.+||..+ ..+........ ++..+.+.. ++. +..++ .+ .+.+|++..
T Consensus 513 ~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~-~l~~WNll~ 584 (792)
T KOG1963|consen 513 TALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGA-LVHAT-QQ-RLSVWNLLS 584 (792)
T ss_pred cchhhcCCCcEEE-EecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccc-eeecc-Cc-eEehHhhhh
Confidence 9999999997555 56788999999988 44433332211 233333332 222 22222 23 488998743
No 136
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.5e-23 Score=205.13 Aligned_cols=289 Identities=17% Similarity=0.283 Sum_probs=233.0
Q ss_pred ccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCC
Q 002564 93 SAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST 170 (907)
Q Consensus 93 ~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~ 170 (907)
.++|+++.| ....|++++.||+++||.++...-. .+..+.+....+.++.|+|+|. ..+++++....++.||+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~-~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGH-SVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh--hheeeeeccCccceeeecCCCc-eEEEecccceEEEEeeccc
Confidence 567888886 5778999999999999999875442 3677777788888999999993 3888999999999999998
Q ss_pred CeEEE--EEcCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCC
Q 002564 171 KKKLY--EFKGW-GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG 247 (907)
Q Consensus 171 ~~~~~--~~~~h-~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg 247 (907)
.+... .+.++ ...+.....||++++||..+..|.|.+....+++.+.++... +.|..++|+.||+ .|++++.+|
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie--G~v~~~~fsSdsk-~l~~~~~~G 366 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE--GVVSDFTFSSDSK-ELLASGGTG 366 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec--cEEeeEEEecCCc-EEEEEcCCc
Confidence 87643 33344 346778899999999999999999999999999999999985 8999999999998 666666789
Q ss_pred cEEEEECCCceeeeeeecccccCe--EEEEEecCCCEEEEEcCCCcEEEEEccCC--CCCcceeEeccCCCCCCeEEEEe
Q 002564 248 VISIWNLEKRRLQSVIREAHDNAI--ISLHFFANEPVLMSASADNSIKMWIFDTT--DGDPRLLRFRSGHSAPPLCIRFY 323 (907)
Q Consensus 248 ~I~iwd~~~~~~~~~~~~~h~~~V--~~l~~~~~~~~l~s~~~d~~i~vw~~~~~--~~~~~~~~~~~~h~~~v~~i~~~ 323 (907)
.|.+||++...+++.+. ..+.| ++++.++++.+||+|+..|.|.|||.+.. ...++.+..+..-...|+++.|+
T Consensus 367 eV~v~nl~~~~~~~rf~--D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn 444 (514)
T KOG2055|consen 367 EVYVWNLRQNSCLHRFV--DDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN 444 (514)
T ss_pred eEEEEecCCcceEEEEe--ecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence 99999999999998887 33444 56777799999999999999999986543 34567777777788899999999
Q ss_pred cCCCEEEEEeC--CCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCce
Q 002564 324 ANGRHILSAGQ--DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 401 (907)
Q Consensus 324 ~~g~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (907)
+|++.|+.++. +..+|+-.+.+...-..
T Consensus 445 ~d~qiLAiaS~~~knalrLVHvPS~TVFsN-------------------------------------------------- 474 (514)
T KOG2055|consen 445 HDAQILAIASRVKKNALRLVHVPSCTVFSN-------------------------------------------------- 474 (514)
T ss_pred cchhhhhhhhhccccceEEEeccceeeecc--------------------------------------------------
Confidence 99999987764 56677766543222111
Q ss_pred EEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 002564 402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ 454 (907)
Q Consensus 402 v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~ 454 (907)
|-. ....-+.++|++|||.|.++++|...|.+.+|.+.
T Consensus 475 ---fP~------------~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 475 ---FPT------------SNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ---CCC------------CCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 111 11223789999999999999999999999999864
No 137
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.2e-23 Score=192.10 Aligned_cols=253 Identities=15% Similarity=0.255 Sum_probs=206.3
Q ss_pred EcccccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEE
Q 002564 89 WSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW 166 (907)
Q Consensus 89 ~~~h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iw 166 (907)
-..|...|..+.. .|++|+||+.|++|+|+.+..+.. ..++.++.+|.+.+..+++....|.+.|++++.||.|.||
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 4678888988774 699999999999999999987654 2347889999999999998776666999999999999999
Q ss_pred ecCCCe--EEEEEcCCCCCEEEEEEcCC--CCEEEEEecCCeEEEEEccCC--ceEEEEeecCCCCEEEEEEecC---CC
Q 002564 167 NISTKK--KLYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKIHVHNVRYD--EELVTFTHSMRGAVTALAFSSD---GQ 237 (907)
Q Consensus 167 d~~~~~--~~~~~~~h~~~I~~l~~sp~--~~~la~g~~dg~I~iwd~~~~--~~~~~~~~~~~~~v~~l~fs~d---g~ 237 (907)
.-.+|+ ..+....|...|++++|.|. |-.||+++.||.|.|.+.++. -....+...|.-.|++++|.|. |.
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 987774 45667889999999999996 568999999999999998765 2334444455778999999986 31
Q ss_pred ----------CEEEEEeCCCcEEEEECCCc--eeeeeeecccccCeEEEEEecCC----CEEEEEcCCCcEEEEEccCCC
Q 002564 238 ----------PLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLHFFANE----PVLMSASADNSIKMWIFDTTD 301 (907)
Q Consensus 238 ----------~~l~sg~~dg~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~~~~~----~~l~s~~~d~~i~vw~~~~~~ 301 (907)
..|++|+.|..|+||+..++ +...++. +|...|+.++|.|.- ..+++++.||++.||..+...
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~-~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~ 244 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE-GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY 244 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhh-hcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence 25999999999999999886 3334466 999999999999964 489999999999999877433
Q ss_pred CCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEce
Q 002564 302 GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (907)
Q Consensus 302 ~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~ 344 (907)
+.+ ....+......+..+.|+..|+.|+.++.|+.+.+|.-.
T Consensus 245 e~w-k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 245 EPW-KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred Ccc-cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 322 233344567889999999999999999999999999754
No 138
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=4.2e-23 Score=205.97 Aligned_cols=254 Identities=18% Similarity=0.340 Sum_probs=203.6
Q ss_pred EcccccceEEEE--e-eCCEEEEEecCCcEEEEecCCCCccc------cceeeEecCCCcccEEEEcCCCCCCEEEEEec
Q 002564 89 WSRHSAKVNLLL--L-FGEHILSIDIDGNMFIWAFKGIEENL------APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ 159 (907)
Q Consensus 89 ~~~h~~~V~~l~--~-~g~~l~s~~~dg~v~vWd~~~~~~~~------~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~ 159 (907)
...|.+.|..+. | +...+++.+..+.|.|||.....-.. .|-..+.+|.+....+.|++... ..+++|+.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~-g~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQE-GTLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccc-eeEeeccC
Confidence 456888888776 3 45677777888999999987654322 22336666766555667777654 68999999
Q ss_pred CCcEEEEecCCCe-------EEEEEcCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEEccC--CceEEEEeecCCCCEEE
Q 002564 160 EGSLQLWNISTKK-------KLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRY--DEELVTFTHSMRGAVTA 229 (907)
Q Consensus 160 dg~i~iwd~~~~~-------~~~~~~~h~~~I~~l~~sp~-~~~la~g~~dg~I~iwd~~~--~~~~~~~~~~~~~~v~~ 229 (907)
|++|++||+.... +...+.+|...|..++|++- .+++++++.|+.+.|||+++ .+....... |.+.|.|
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a-h~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA-HSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc-cCCceeE
Confidence 9999999996432 35668999999999999995 46888999999999999995 344444444 4899999
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEECCCc-eeeeeeecccccCeEEEEEecCC-CEEEEEcCCCcEEEEEccCC-------
Q 002564 230 LAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTT------- 300 (907)
Q Consensus 230 l~fs~dg~~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~------- 300 (907)
++|+|-+.++||+|+.|++|.+||+++- +.+.++. +|...|..+.|+|.. ..|++++.|+.+.+||+..-
T Consensus 278 ~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred EEeCCCCCceEEeccCCCcEEEeechhcccCceecc-CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence 9999999889999999999999999986 4566666 999999999999965 68999999999999998654
Q ss_pred ---CCCcceeEeccCCCCCCeEEEEecCC-CEEEEEeCCCCEEEEEcee
Q 002564 301 ---DGDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQ 345 (907)
Q Consensus 301 ---~~~~~~~~~~~~h~~~v~~i~~~~~g-~~l~s~~~dg~i~iwd~~~ 345 (907)
++.+.++..-.||...|..+.|+|+. -.+++.+.|+.+.||....
T Consensus 357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 23456677778999999999999954 5677899999999998753
No 139
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.4e-20 Score=203.04 Aligned_cols=450 Identities=16% Similarity=0.218 Sum_probs=314.0
Q ss_pred eeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCC-CEEEEEecCCcEEEEecCCCeEEEEEcC
Q 002564 101 LFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYL-NKVIVGSQEGSLQLWNISTKKKLYEFKG 179 (907)
Q Consensus 101 ~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 179 (907)
.|+++++.+. +..|.||...++++ +..+..+........+.|.... .++++++.+|.|++||...+.++.++..
T Consensus 26 nD~k~l~~~~-~~~V~VyS~~Tg~~----i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 26 NDAKFLFLCT-GNFVKVYSTATGEC----ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred cCCcEEEEee-CCEEEEEecchHhh----hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 3677777776 78899999999999 7778888888888888887753 5788999999999999999999999876
Q ss_pred CCCCEEEEEEcCC---CCEEE-EEecCCe-EEEEEccCCceEEEEe------------ecCCCCEEEEEEecCCCCEEEE
Q 002564 180 WGSSISSCVSSPA---LDVVA-VGCSDGK-IHVHNVRYDEELVTFT------------HSMRGAVTALAFSSDGQPLLAS 242 (907)
Q Consensus 180 h~~~I~~l~~sp~---~~~la-~g~~dg~-I~iwd~~~~~~~~~~~------------~~~~~~v~~l~fs~dg~~~l~s 242 (907)
..++..+.+.|. ....+ .+..|.. +.....+..+....+. ..+. .-.++.+++.|. +...
T Consensus 101 -~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~-~~~~I~~~~~ge-~~~i 177 (792)
T KOG1963|consen 101 -NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ-EPKSIVDNNSGE-FKGI 177 (792)
T ss_pred -CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc-CCccEEEcCCce-EEEE
Confidence 345555555331 11222 2222211 1111111122211111 1111 146788888887 4433
Q ss_pred EeCCCcEEEEECCCceee---eeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeE
Q 002564 243 GASSGVISIWNLEKRRLQ---SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC 319 (907)
Q Consensus 243 g~~dg~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~ 319 (907)
..+..+.+|+..++... +.....|.-.+++.+++|++++++++..||.|.+|.=-..+........+.-|...|.+
T Consensus 178 -~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~ 256 (792)
T KOG1963|consen 178 -VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS 256 (792)
T ss_pred -EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccce
Confidence 34668999998875411 11123577779999999999999999999999999633312333344556789999999
Q ss_pred EEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCC
Q 002564 320 IRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT 399 (907)
Q Consensus 320 i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 399 (907)
+.|+++|.+|++||..|.+.+|.+.+++. +-++
T Consensus 257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLP---------------------------------------------- 289 (792)
T KOG1963|consen 257 LSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLP---------------------------------------------- 289 (792)
T ss_pred eEEecCCceEeecccceEEEEEeecCCCc-cccc----------------------------------------------
Confidence 99999999999999999999999987762 1111
Q ss_pred ceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccc---cccCcCCc
Q 002564 400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER---SNYAHNGE 476 (907)
Q Consensus 400 ~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~h~~~ 476 (907)
.-.++|..+.+|||+.+.++...|..|.+..+.+...........+. ......+-
T Consensus 290 ----------------------RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l 347 (792)
T KOG1963|consen 290 ----------------------RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL 347 (792)
T ss_pred ----------------------ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccc
Confidence 11278999999999999999999999999988766555444322211 11234556
Q ss_pred EEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeec------------CcceeEEEEeeCCCEEEEEeC--------C
Q 002564 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV------------GCSLVKIVYHRVNGLLATVAD--------D 536 (907)
Q Consensus 477 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------~~~i~~~~~s~~~~~la~~~~--------d 536 (907)
.+.++++|.-+.++-.+..|.|.+||+-+.+.+..+.. ...++.++.+..|.+++++-. |
T Consensus 348 ~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~ 427 (792)
T KOG1963|consen 348 TTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFD 427 (792)
T ss_pred ceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccC
Confidence 78899999777888899999999999988776655532 145777888888999988642 3
Q ss_pred --CeEEEEEcccc----eeEEE-eecCCCCeeeEEECC-CCc-EEEEEeCCCcEEEEEcCCCc----------eeeEe-e
Q 002564 537 --LVIRLFDVVAL----RMVRK-FEGHTDRITDFCFSE-DGK-WLLSSGMDGSLRIWDVILAR----------QIDAI-H 596 (907)
Q Consensus 537 --g~I~v~d~~~~----~~~~~-~~~h~~~I~~l~fsp-dg~-~l~s~s~Dg~I~vwd~~~~~----------~~~~~-~ 596 (907)
-.+++|-.... .+... ...|...+...+|.+ ... ..++++.||.++||-+.+.+ |...- .
T Consensus 428 ~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy 507 (792)
T KOG1963|consen 428 GEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY 507 (792)
T ss_pred ceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc
Confidence 25778866543 23222 246877777666654 333 78999999999999884321 22111 1
Q ss_pred eCCceEEEEECCCCceEEEEEecCCeEEEeeccc
Q 002564 597 VDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (907)
Q Consensus 597 ~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~ 630 (907)
+..++++++||.||..|+.+..| .|.+||...
T Consensus 508 ~k~~i~a~~fs~dGslla~s~~~--~Itiwd~~~ 539 (792)
T KOG1963|consen 508 HKTPITALCFSQDGSLLAVSFDD--TITIWDYDT 539 (792)
T ss_pred ccCcccchhhcCCCcEEEEecCC--EEEEecCCC
Confidence 35579999999999877777655 599999765
No 140
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=192.26 Aligned_cols=282 Identities=15% Similarity=0.265 Sum_probs=217.8
Q ss_pred EEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeee
Q 002564 184 ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI 263 (907)
Q Consensus 184 I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~ 263 (907)
..|+.|++.|.+||+|+.||.|.|||+.|...-..+..| ..+|++++||+||+ .|++++.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH-~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAH-VRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcc-ccceeEEEecCCCC-EeeeecCCceeEEEeccCCCceeEE
Confidence 789999999999999999999999999998876666665 78999999999999 8999999999999999999999999
Q ss_pred ecccccCeEEEEEecCCCEEEEEc-CCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEE
Q 002564 264 REAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 342 (907)
Q Consensus 264 ~~~h~~~V~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd 342 (907)
+ ..++|+.+.|+|.....+.++ .+..- .-+.|++.-..++.-..||.+.
T Consensus 104 r--f~spv~~~q~hp~k~n~~va~~~~~sp-------------------------~vi~~s~~~h~~Lp~d~d~dln--- 153 (405)
T KOG1273|consen 104 R--FDSPVWGAQWHPRKRNKCVATIMEESP-------------------------VVIDFSDPKHSVLPKDDDGDLN--- 153 (405)
T ss_pred E--ccCccceeeeccccCCeEEEEEecCCc-------------------------EEEEecCCceeeccCCCccccc---
Confidence 7 789999999999664333322 11111 2223332112222223333211
Q ss_pred ceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCC
Q 002564 343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422 (907)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~ 422 (907)
T Consensus 154 -------------------------------------------------------------------------------- 153 (405)
T KOG1273|consen 154 -------------------------------------------------------------------------------- 153 (405)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (907)
Q Consensus 423 ~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 502 (907)
....+..+.+.|+++++|+..|.+.+|+..+.+.+..+. ......|..+.++..|++++.-+.|..||.|+
T Consensus 154 --~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~r-------its~~~IK~I~~s~~g~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 154 --SSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFR-------ITSVQAIKQIIVSRKGRFLIINTSDRVIRTYE 224 (405)
T ss_pred --cccccccccCCCCEEEEecCcceEEEEecchheeeeeee-------echheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence 112233677889999999999999999999998888775 12347899999999999999999999999999
Q ss_pred CCCC-------cee--eeee---cCcceeEEEEeeCCCEEEEEeC-CCeEEEEEcccceeEEEeecCC-CCeeeEEECCC
Q 002564 503 FKGR-------DLK--SRWE---VGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMVRKFEGHT-DRITDFCFSED 568 (907)
Q Consensus 503 ~~~~-------~~~--~~~~---~~~~i~~~~~s~~~~~la~~~~-dg~I~v~d~~~~~~~~~~~~h~-~~I~~l~fspd 568 (907)
++.- ++. +.++ ....=.+++|+.+|.+++.++. -..++||....|.+++.+.|.. ....++.|+|-
T Consensus 225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~ 304 (405)
T KOG1273|consen 225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPV 304 (405)
T ss_pred hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccc
Confidence 7621 111 1111 1134467899999999988875 4589999999999999999988 55778999999
Q ss_pred CcEEEEEeCCCcEEEEEcC
Q 002564 569 GKWLLSSGMDGSLRIWDVI 587 (907)
Q Consensus 569 g~~l~s~s~Dg~I~vwd~~ 587 (907)
...+++- ..|.|+||...
T Consensus 305 rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 305 RPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred eeeeeec-cCCceEEEEee
Confidence 8888877 67899999864
No 141
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=3.7e-21 Score=199.02 Aligned_cols=275 Identities=13% Similarity=0.211 Sum_probs=208.4
Q ss_pred cccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEE
Q 002564 139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT 218 (907)
Q Consensus 139 ~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~ 218 (907)
.+...+|.||| ..++.+. +..+.+||.+.|..++++++|...|.|++|+.||+.+|+|+.|..|.+|+.+- -..
T Consensus 14 ci~d~afkPDG--sqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDG--TQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGI 87 (1081)
T ss_pred chheeEECCCC--ceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cce
Confidence 56678899999 6677764 45699999999999999999999999999999999999999999999998653 233
Q ss_pred EeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 002564 219 FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298 (907)
Q Consensus 219 ~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~ 298 (907)
+.-.|...|.|+.|+|-.. .|++++- ...-+|..+.....+. .....+.+++|..||++++.|-.||+|.+-+-.
T Consensus 88 LkYSH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~qK~V~K~---kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~ 162 (1081)
T KOG1538|consen 88 LKYSHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQKSVSKH---KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN 162 (1081)
T ss_pred eeeccCCeeeEeecCchHH-Hhhhcch-hhccccChhhhhHHhh---hhheeEEEeeecCCCcEEEEeccCceEEeecCC
Confidence 4445678999999999887 7888874 4577898765543322 245678999999999999999999999987422
Q ss_pred CCCCCcceeEeccCCCCCCeEEEEecCC-----CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhccc
Q 002564 299 TTDGDPRLLRFRSGHSAPPLCIRFYANG-----RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 373 (907)
Q Consensus 299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~g-----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (907)
......+....|...+|.+++|+|.. ..++......++.++.+...
T Consensus 163 --gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--------------------------- 213 (1081)
T KOG1538|consen 163 --GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--------------------------- 213 (1081)
T ss_pred --CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce---------------------------
Confidence 22223344445678899999999943 24444555555544443211
Q ss_pred CceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 002564 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL 453 (907)
Q Consensus 374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~ 453 (907)
.++ ....-.-...|+.+-++|.++++|+.++.+.+|.-
T Consensus 214 -------------------------------------~Ig-----k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR 251 (1081)
T KOG1538|consen 214 -------------------------------------QIG-----KDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR 251 (1081)
T ss_pred -------------------------------------eec-----ccccCCCCchhheeccCCcEEEEccCCCceEEEee
Confidence 111 01111245678899999999999999999999974
Q ss_pred CCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564 454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (907)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 504 (907)
. |..+.+.. .....|..++..|++++++.|+.||+|..|++.
T Consensus 252 ~-GvrLGTvg--------~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 252 D-GVRLGTVG--------EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred c-CeEEeecc--------ccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 3 55555553 466789999999999999999999999999764
No 142
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=6.1e-23 Score=216.73 Aligned_cols=286 Identities=20% Similarity=0.313 Sum_probs=218.9
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCc----eEEEEeecC--CCCEEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 002564 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE----ELVTFTHSM--RGAVTALAFSSDGQPLLASGASSGVISIWNL 254 (907)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~----~~~~~~~~~--~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~ 254 (907)
.....++...++...|++++. ..+.||.+.... +...+.... .-.+..+.|..-...+||+++..|.|.+||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 345667777788888888776 467788765332 222221110 1234567777655559999999999999999
Q ss_pred CC---ceeeeeeecccccCeEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEE
Q 002564 255 EK---RRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHI 329 (907)
Q Consensus 255 ~~---~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l 329 (907)
.. .+.+..+. .|...++++.|++..+ +|++||.||+|++||+...+. ..++.+....|..+.|+| .+..+
T Consensus 118 nk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S----~~t~~~nSESiRDV~fsp~~~~~F 192 (839)
T KOG0269|consen 118 NKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS----KSTFRSNSESIRDVKFSPGYGNKF 192 (839)
T ss_pred CccccchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeecccc----cccccccchhhhceeeccCCCceE
Confidence 87 56666776 8999999999998664 889999999999999987643 344456888999999999 77788
Q ss_pred EEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeee
Q 002564 330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN 409 (907)
Q Consensus 330 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~ 409 (907)
+++...|.+++||++.....
T Consensus 193 ~s~~dsG~lqlWDlRqp~r~------------------------------------------------------------ 212 (839)
T KOG0269|consen 193 ASIHDSGYLQLWDLRQPDRC------------------------------------------------------------ 212 (839)
T ss_pred EEecCCceEEEeeccCchhH------------------------------------------------------------
Confidence 88888888999988643211
Q ss_pred ceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEE
Q 002564 410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM 489 (907)
Q Consensus 410 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 489 (907)
...+ .+|.++|.++.|+|++.+|
T Consensus 213 -------------------------------------------------~~k~--------~AH~GpV~c~nwhPnr~~l 235 (839)
T KOG0269|consen 213 -------------------------------------------------EKKL--------TAHNGPVLCLNWHPNREWL 235 (839)
T ss_pred -------------------------------------------------HHHh--------hcccCceEEEeecCCCcee
Confidence 1111 4899999999999999999
Q ss_pred EEEecCCeEEEEECCCCc--eeeeeecCcceeEEEEeeCCCE-EEEEe--CCCeEEEEEcccc-eeEEEeecCCCCeeeE
Q 002564 490 ISAGYHGDIKVWDFKGRD--LKSRWEVGCSLVKIVYHRVNGL-LATVA--DDLVIRLFDVVAL-RMVRKFEGHTDRITDF 563 (907)
Q Consensus 490 ~s~~~dg~i~iwd~~~~~--~~~~~~~~~~i~~~~~s~~~~~-la~~~--~dg~I~v~d~~~~-~~~~~~~~h~~~I~~l 563 (907)
||||.|++|+|||+.+++ ...++....++.++.|-|+..+ ||+++ .|-.|+|||+... -+.+++..|+..++.+
T Consensus 236 ATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i 315 (839)
T KOG0269|consen 236 ATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI 315 (839)
T ss_pred eecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccce
Confidence 999999999999998664 4556666699999999998764 55443 3779999999765 4567889999999999
Q ss_pred EECC-CCcEEEEEeCCCcEEEEEcCCC
Q 002564 564 CFSE-DGKWLLSSGMDGSLRIWDVILA 589 (907)
Q Consensus 564 ~fsp-dg~~l~s~s~Dg~I~vwd~~~~ 589 (907)
+|-. |-..|.+++.||+|..-.++++
T Consensus 316 ~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 316 AWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eccCCCceeeEeecCccHHHHhhhhcc
Confidence 9965 4557889999998876666554
No 143
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=8.9e-23 Score=203.68 Aligned_cols=243 Identities=17% Similarity=0.263 Sum_probs=198.5
Q ss_pred CCCCcceEEEEEecCeEE-EEE---cCeEEEEeCCee------------EEEEcccccceEEEEee---CCEEEEEecCC
Q 002564 53 PQLPKKIRALASYRDYTF-AAY---GNHIAVVKRAHQ------------VATWSRHSAKVNLLLLF---GEHILSIDIDG 113 (907)
Q Consensus 53 ~~~~~~I~~la~~~~~~~-~a~---g~~I~vw~~~~~------------~~~~~~h~~~V~~l~~~---g~~l~s~~~dg 113 (907)
-.|++.|+.+..-|+... +|+ ++.|+|||..+. -.++.||...-.+|+|+ ..+|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 357888888888887544 454 345999985321 12688999987888873 66899999999
Q ss_pred cEEEEecCCCCcc---ccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecC--CCeEEEEEcCCCCCEEEEE
Q 002564 114 NMFIWAFKGIEEN---LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS--TKKKLYEFKGWGSSISSCV 188 (907)
Q Consensus 114 ~v~vWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~h~~~I~~l~ 188 (907)
+|++||+...... ..+...+..|...+-.++|||-.. +.+++++.|+.+.|||++ +.++.+..++|.+.|.|++
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~ 279 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA 279 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence 9999999876552 445667788889999999999875 678899999999999999 6777888899999999999
Q ss_pred EcCC-CCEEEEEecCCeEEEEEccCCc-eEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCce--------
Q 002564 189 SSPA-LDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-------- 258 (907)
Q Consensus 189 ~sp~-~~~la~g~~dg~I~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~-------- 258 (907)
|+|- +.+||+|+.|++|.+||+++-+ .+.++..| ...|.++.|+|+...+||+++.|+.+.|||+..-.
T Consensus 280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H-~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH-EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred eCCCCCceEEeccCCCcEEEeechhcccCceeccCC-CcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence 9995 5688999999999999999765 55566554 89999999999998899999999999999986431
Q ss_pred ------eeeeeecccccCeEEEEEecCCC-EEEEEcCCCcEEEEEcc
Q 002564 259 ------LQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFD 298 (907)
Q Consensus 259 ------~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~ 298 (907)
++..- .||...|..+.|+|+.+ .+++++.|+.+.||...
T Consensus 359 ~dgppEllF~H-gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 359 EDGPPELLFIH-GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccCCcceeEEe-cCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 22333 48999999999999998 56678889999999764
No 144
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=4e-22 Score=198.37 Aligned_cols=303 Identities=20% Similarity=0.280 Sum_probs=233.1
Q ss_pred EECCCceeeeeeecccccCeEEEEEecCCC--EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCE
Q 002564 252 WNLEKRRLQSVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRH 328 (907)
Q Consensus 252 wd~~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~ 328 (907)
+|+.+-.....++ -+.+.|++++|+|..+ ++++|..-|.|-+||+++......-+..+..|..+|.++.|+| +...
T Consensus 171 l~l~~~~~~~v~k-v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 171 LDLDDYRILNVAK-VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccccceecceeE-ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhh
Confidence 4444445555565 6889999999999765 7888888999999999755544455667789999999999999 6779
Q ss_pred EEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEee
Q 002564 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408 (907)
Q Consensus 329 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~ 408 (907)
+++.+.||+|++-|+........++.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~e~v~s~------------------------------------------------------ 275 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNISEEVLSL------------------------------------------------------ 275 (498)
T ss_pred eeeeccCceeeeeeecchhhHHHhhc------------------------------------------------------
Confidence 99999999999999876533222111
Q ss_pred eceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-C
Q 002564 409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-T 487 (907)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~ 487 (907)
......+..+.++.+...++.|..-|...+||+.++....... .-|...|++++++|.. .
T Consensus 276 ------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~-------~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 276 ------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL-------RLHKKKITSVALNPVCPW 336 (498)
T ss_pred ------------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh-------hhhhcccceeecCCCCch
Confidence 0112456677888888888888888899999998876533222 3788899999999976 6
Q ss_pred EEEEEecCCeEEEEECCCCc-----eeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcc----cceeEEEeecCCC
Q 002564 488 LMISAGYHGDIKVWDFKGRD-----LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV----ALRMVRKFEGHTD 558 (907)
Q Consensus 488 ~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~----~~~~~~~~~~h~~ 558 (907)
+++|++.|++.+|||+..-. .+..+.+...|.+..|||.+..|++.+.|..|+|||.. ...+...+. |..
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~ 415 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN 415 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence 78999999999999987532 35566777999999999999999999999999999983 333344443 321
Q ss_pred ------CeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCc--eEE-EEECCCCceEEEEEecCCeEEEeecc
Q 002564 559 ------RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS--ITA-LSLSPNMDVLATAHVDQNGVYLWVNR 629 (907)
Q Consensus 559 ------~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~--v~~-l~~spdg~~lat~~~d~~~i~lW~~~ 629 (907)
......|.||..++++|-.-..|-|+|-..++++..+..+.. |.+ ..|+|-+..+++|+..++.|+||.++
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 133467999999999999989999999998888887765443 444 47999998777777666579999875
No 145
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=2.3e-21 Score=200.53 Aligned_cols=489 Identities=15% Similarity=0.172 Sum_probs=302.9
Q ss_pred cceEEEEEecCeE--EEEEcCeEEEEeC--CeeEEEEcccccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccce
Q 002564 57 KKIRALASYRDYT--FAAYGNHIAVVKR--AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPV 130 (907)
Q Consensus 57 ~~I~~la~~~~~~--~~a~g~~I~vw~~--~~~~~~~~~h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~ 130 (907)
..|..+||-|||. .+|.|+++.+||. |..+.+++||.+.|.++++ +|+.++||+.|..|.+|+-.-..
T Consensus 13 hci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG------ 86 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG------ 86 (1081)
T ss_pred cchheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc------
Confidence 3789999999954 4688999999995 6678889999999999998 79999999999999999854432
Q ss_pred eeEec-CCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564 131 GHVKL-DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209 (907)
Q Consensus 131 ~~~~~-~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd 209 (907)
.++. |...+..+.|+|-+ ..+++++-+. .-+|....... ...+. ...|.+++|..||++++.|-.+|+|.|-|
T Consensus 87 -~LkYSH~D~IQCMsFNP~~--h~LasCsLsd-FglWS~~qK~V-~K~ks-s~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 87 -ILKYSHNDAIQCMSFNPIT--HQLASCSLSD-FGLWSPEQKSV-SKHKS-SSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred -eeeeccCCeeeEeecCchH--HHhhhcchhh-ccccChhhhhH-Hhhhh-heeEEEeeecCCCcEEEEeccCceEEeec
Confidence 2333 45556666699988 7888887654 78898654333 22222 56889999999999999999999999987
Q ss_pred ccCCceEEEEee--cCCCCEEEEEEecCCC----CEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEE
Q 002564 210 VRYDEELVTFTH--SMRGAVTALAFSSDGQ----PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 283 (907)
Q Consensus 210 ~~~~~~~~~~~~--~~~~~v~~l~fs~dg~----~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 283 (907)
++++....+.. +...+|.+++|+|... .++++.....++.++.+. |+.+..-+ .-.-...|+.+.++|.++
T Consensus 161 -k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r-~L~FdP~CisYf~NGEy~ 237 (1081)
T KOG1538|consen 161 -KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDR-ALNFDPCCISYFTNGEYI 237 (1081)
T ss_pred -CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccc-cCCCCchhheeccCCcEE
Confidence 44655555543 3467999999998632 478888888999999874 55554333 344556899999999999
Q ss_pred EEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhh
Q 002564 284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 363 (907)
Q Consensus 284 ~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 363 (907)
+.||.|+.+++|.-+ ...+.+.......|+.++..|+++.++.|..||+|..|++...............++. -
T Consensus 238 LiGGsdk~L~~fTR~-----GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~s-M 311 (1081)
T KOG1538|consen 238 LLGGSDKQLSLFTRD-----GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDS-M 311 (1081)
T ss_pred EEccCCCceEEEeec-----CeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhh-h
Confidence 999999999999422 2455666667789999999999999999999999999998654322111110000000 0
Q ss_pred ccchhhhcccCceeEeeecccc--cccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEE
Q 002564 364 LKMKEEELKLKPVIAFDCAEIR--ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL 441 (907)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 441 (907)
-.+-...+....-..+.+...- -.-..+-++.. -...+.+|...+........+....-.....+--.--+++.+++
T Consensus 312 tDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQ-Lpeki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVl 390 (1081)
T KOG1538|consen 312 TDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQ-LPEKILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVL 390 (1081)
T ss_pred HHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheec-ccceEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEE
Confidence 0000000000000000000000 00000000100 11233344433222111000000000011111112223455544
Q ss_pred EeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEE--cC-CCCEEEEEecCCeEEEEECCCCceeeeeecCcce
Q 002564 442 GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC--DS-TNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSL 518 (907)
Q Consensus 442 g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i 518 (907)
+ .+..+..+|...-..+ .. ...+-|.-+.+ -| ...-|+.|-.+|.|.-.=+++.-++-.......|
T Consensus 391 C-qekrLqClDF~Gvk~R-eW---------~M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~PiLl~~~~tAv 459 (1081)
T KOG1538|consen 391 C-QEKRLQCLDFSGVKER-EW---------QMESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPILLLKQATAV 459 (1081)
T ss_pred E-cccceeeecccchhhh-hh---------hHHHHHHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchhheeccccee
Confidence 3 5666777776532221 11 01111111111 12 2345777777776543334444444444455789
Q ss_pred eEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCc-EEEEEeCCCcEEE
Q 002564 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSSGMDGSLRI 583 (907)
Q Consensus 519 ~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~-~l~s~s~Dg~I~v 583 (907)
.|+..+.....||+..+.++..++|+.+++.+.+-. .+++++|+.... +|+..+ .|.+.|
T Consensus 460 rClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QEp----g~nSV~wNT~~E~MlcfT~-~g~L~V 520 (1081)
T KOG1538|consen 460 RCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQEP----GANSVAWNTQCEDMLCFTG-GGYLNV 520 (1081)
T ss_pred EEeeccCCcceEEEEccCCeEEEEEccCCceEeecC----CCceEEeeccccceEEEec-CCceEE
Confidence 999999999999999999999999999998876433 477889976443 444332 254433
No 146
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=5.3e-22 Score=205.16 Aligned_cols=386 Identities=16% Similarity=0.171 Sum_probs=261.3
Q ss_pred CCEEEEEecCCcEEEEecCCCeE------EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEE--Eeec
Q 002564 151 LNKVIVGSQEGSLQLWNISTKKK------LYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT--FTHS 222 (907)
Q Consensus 151 ~~~l~~~s~dg~i~iwd~~~~~~------~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~--~~~~ 222 (907)
-.+|+++..+|.|.++|.+...- ++.+..|...|..+.|-|....|++++.|.++++||+++.+.... +.+
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G- 142 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG- 142 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc-
Confidence 36899999999999999865432 355678999999999999667899999999999999999887766 444
Q ss_pred CCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCcee---------------------------eeeeecccccCeEE--
Q 002564 223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL---------------------------QSVIREAHDNAIIS-- 273 (907)
Q Consensus 223 ~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~---------------------------~~~~~~~h~~~V~~-- 273 (907)
|.+.|.+++|.|+...++++|+.||.|.|||+.-... +... .+|...|.+
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~-kA~s~ti~ssv 221 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW-KAASNTIFSSV 221 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc-ccccCceeeee
Confidence 5899999999999998999999999999999863320 0111 145555665
Q ss_pred -EEEecCCCEEEEEcC-CCcEEEEEccCCCCCc----ceeEeccCC---CCCCeEEEEecCCCEEEEEeCCCCEEEEEce
Q 002564 274 -LHFFANEPVLMSASA-DNSIKMWIFDTTDGDP----RLLRFRSGH---SAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (907)
Q Consensus 274 -l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~----~~~~~~~~h---~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~ 344 (907)
+.+..|+..|+++|. |+.|+|||+....... .....+.-| ...+.++.....|.+|+....|++|..|++.
T Consensus 222 Tvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~ 301 (720)
T KOG0321|consen 222 TVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMR 301 (720)
T ss_pred EEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecc
Confidence 666778889999988 9999999998764321 112222233 3466777777778888887789999999987
Q ss_pred ecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCC
Q 002564 345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 424 (907)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~ 424 (907)
+........ +.. + ...
T Consensus 302 s~s~sP~~~-------------------------~sg---------------------------------~------~~~ 317 (720)
T KOG0321|consen 302 SLSISPVAE-------------------------FSG---------------------------------K------LNS 317 (720)
T ss_pred ccCcCchhh-------------------------ccC---------------------------------c------ccc
Confidence 543221100 000 0 001
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-CEEEEEecCCeEEEEEC
Q 002564 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDF 503 (907)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~ 503 (907)
..-..-..+|++.+++.|+.++..++|.+.+...-.... .+|...|++++|.|.. .-+++++.|..+++|++
T Consensus 318 sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l-------~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 318 SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL-------LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred eeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh-------hCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 222344679999999999999999999998876655443 5999999999998844 45778899999999998
Q ss_pred CCCcee--------------eeeecC-cce-------------------------eEEEEeeCCCEEEEEe----CCCeE
Q 002564 504 KGRDLK--------------SRWEVG-CSL-------------------------VKIVYHRVNGLLATVA----DDLVI 539 (907)
Q Consensus 504 ~~~~~~--------------~~~~~~-~~i-------------------------~~~~~s~~~~~la~~~----~dg~I 539 (907)
..+-.. ..++.+ ..+ ..++..|.+.-...+. ..-.|
T Consensus 391 ~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR~~~~r~~ssP~s~a~~~s~~s~~~~~~~t~qt~~i 470 (720)
T KOG0321|consen 391 SNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPREGMNRISSSPVSLACSPSGASDDCGYGVTDQTSGI 470 (720)
T ss_pred cCchhhccccccchhhhhhhhhhhccccccccccccccccccchhhhccccccCccchhcCcCCcccccCCCcccccccc
Confidence 654111 111110 011 1112222222221111 11123
Q ss_pred EEEEcccceeEEE--eecCCCCeeeEEECCCCcEEEEEeC-----------CCcEEEEEcCCCceeeEeeeCCceEEEEE
Q 002564 540 RLFDVVALRMVRK--FEGHTDRITDFCFSEDGKWLLSSGM-----------DGSLRIWDVILARQIDAIHVDVSITALSL 606 (907)
Q Consensus 540 ~v~d~~~~~~~~~--~~~h~~~I~~l~fspdg~~l~s~s~-----------Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~ 606 (907)
...+....+.... -.+|...|+...+++.++.+++.+- ++.+++|...........+.......+.|
T Consensus 471 ~~~p~kr~~~~ss~~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~s~~s~l~pps~~~r~ar~~~r~if 550 (720)
T KOG0321|consen 471 VVFPTKRNKPSSSRGSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVNSPNSSLHPPSANLREARKKSRLIF 550 (720)
T ss_pred eecchhccCccccccccccccccccCCCccccccccccCcccccCCCCCcCcccccccccccCCchhhhcccccccceec
Confidence 3333333322211 2246777888888888878888887 88999998776555554443334555666
Q ss_pred CCC
Q 002564 607 SPN 609 (907)
Q Consensus 607 spd 609 (907)
+|-
T Consensus 551 s~~ 553 (720)
T KOG0321|consen 551 SPG 553 (720)
T ss_pred cCc
Confidence 653
No 147
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=6.9e-22 Score=185.27 Aligned_cols=293 Identities=17% Similarity=0.266 Sum_probs=226.5
Q ss_pred CCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe------------EE---EEEcCCCCCEEEEEEcC-CCCEEEEE
Q 002564 136 DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK------------KL---YEFKGWGSSISSCVSSP-ALDVVAVG 199 (907)
Q Consensus 136 ~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~------------~~---~~~~~h~~~I~~l~~sp-~~~~la~g 199 (907)
|.+.+.+..+.+..- +++++|+.||.|.+||+++.. ++ ..-.+|.-.|..+.|-| |...+.++
T Consensus 42 HgGsvNsL~id~teg-rymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEG-RYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred CCCccceeeeccccc-eEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 556666666666543 799999999999999997543 11 11246888999999998 45578888
Q ss_pred ecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCC--CCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEe
Q 002564 200 CSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG--QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFF 277 (907)
Q Consensus 200 ~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg--~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~ 277 (907)
+-|.++++||..+-+....|... +.|++-+++|-. ..++|+|..+-.|++.|+.+|.+.+++. +|...|.++.|+
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~me--~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~Ws 197 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFKME--GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAVEWS 197 (397)
T ss_pred cccceEEEeecccceeeEEeecC--ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEEEec
Confidence 99999999999999999999875 789999999843 3478889999999999999999999999 999999999999
Q ss_pred cCCC-EEEEEcCCCcEEEEEccCCCCC-----------cceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEcee
Q 002564 278 ANEP-VLMSASADNSIKMWIFDTTDGD-----------PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345 (907)
Q Consensus 278 ~~~~-~l~s~~~d~~i~vw~~~~~~~~-----------~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~ 345 (907)
|... .|++|+.||.|++||++...+- +..++....|.+.+..++|..++.++++++.|..+++|+...
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 9876 6788999999999999866332 233344567889999999999999999999999999999877
Q ss_pred cccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCC
Q 002564 346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 425 (907)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~ 425 (907)
+.....-..+....+ ...
T Consensus 278 G~ntl~~~g~~~~n~--------------------------------------------------------------~~~ 295 (397)
T KOG4283|consen 278 GRNTLREFGPIIHNQ--------------------------------------------------------------TTS 295 (397)
T ss_pred Ccccccccccccccc--------------------------------------------------------------ccc
Confidence 654322111000000 001
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 002564 426 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (907)
Q Consensus 426 ~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 503 (907)
....+. +.+...++.--.++.+.++++-++..+..+. .|...|.+.++-|+=+...++..|+.+..|-.
T Consensus 296 ~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~--------~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 296 FAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS--------THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee--------cccceeeEEeecCchhhhhccccCCccccccc
Confidence 111122 2233333333455889999999999988885 89889999999999999999999999999975
No 148
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=7.3e-22 Score=202.39 Aligned_cols=317 Identities=14% Similarity=0.188 Sum_probs=235.7
Q ss_pred cccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCC-EEEEEeCCCCEEEEEc
Q 002564 265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HILSAGQDRAFRLFSV 343 (907)
Q Consensus 265 ~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~-~l~s~~~dg~i~iwd~ 343 (907)
.+|.+.|.++...|.|.+|++|+.||+|+||.+.++ ++++.. ...+.|.|++|+|.+. .++....++.+.+.+.
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg----Rcvr~~-~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG----RCVRTV-QFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc----eEEEEE-eecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 399999999999999999999999999999988876 666655 3456899999999553 3344444444666665
Q ss_pred eecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCC
Q 002564 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423 (907)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~ 423 (907)
.-+.....-..... +.-.| .-...+.++..|.-........-+.....+
T Consensus 472 ~~G~~~e~~~t~el-------------l~~~~------------------~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~ 520 (733)
T KOG0650|consen 472 IFGDRLEVGPTKEL-------------LASAP------------------NESEPDAAVVTWSRASLDELEKGVCIVIKH 520 (733)
T ss_pred cccchhhhcchhhh-------------hhcCC------------------CccCCcccceeechhhhhhhccceEEEEec
Confidence 43322111000000 00000 001123355566655333222222333356
Q ss_pred CCceEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEE
Q 002564 424 PTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 500 (907)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 500 (907)
...|+.+.|+..|.|+++...+ ..|.|+++........|. ...+.|.++.|+|...+|++++. ..|++
T Consensus 521 ~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~--------kskG~vq~v~FHPs~p~lfVaTq-~~vRi 591 (733)
T KOG0650|consen 521 PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFR--------KSKGLVQRVKFHPSKPYLFVATQ-RSVRI 591 (733)
T ss_pred CCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchh--------hcCCceeEEEecCCCceEEEEec-cceEE
Confidence 6899999999999999987664 478889888766655553 56678999999999999988886 78999
Q ss_pred EECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccc-eeEEEeecCCCCeeeEEECCCCcEEEEEeCC
Q 002564 501 WDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578 (907)
Q Consensus 501 wd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D 578 (907)
||+..+.++..+... ..|..++.+|.|..|++|+.|+.+..||+.-. ++.+++.-|...+++++|++.-.++++|+.|
T Consensus 592 YdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdD 671 (733)
T KOG0650|consen 592 YDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDD 671 (733)
T ss_pred EehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCC
Confidence 999998888776555 68999999999999999999999999999754 6788899999999999999999999999999
Q ss_pred CcEEEEE------cCCCc---eeeEeeeCCc-----eEEEEECCCCceEEEEEecCCeEEEee
Q 002564 579 GSLRIWD------VILAR---QIDAIHVDVS-----ITALSLSPNMDVLATAHVDQNGVYLWV 627 (907)
Q Consensus 579 g~I~vwd------~~~~~---~~~~~~~~~~-----v~~l~~spdg~~lat~~~d~~~i~lW~ 627 (907)
|++.|+. +..+- ++..+++|.. |..+.|+|...+|.+++.|+ +|++|.
T Consensus 672 gtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~-tirlfT 733 (733)
T KOG0650|consen 672 GTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADG-TIRLFT 733 (733)
T ss_pred CcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCc-eEEeeC
Confidence 9999984 32232 3355555542 78888999999999999999 799994
No 149
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4.3e-21 Score=181.49 Aligned_cols=288 Identities=15% Similarity=0.256 Sum_probs=213.5
Q ss_pred eeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec--CCCEEEEEeCCCCE
Q 002564 261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA--NGRHILSAGQDRAF 338 (907)
Q Consensus 261 ~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~--~g~~l~s~~~dg~i 338 (907)
..+..+|..-|.++.|.+-|+.+++|+.|++|+|||++..++.+.+....+.|.+.|..+.|.+ -|+.+++++.|+++
T Consensus 6 ~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred cccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence 3445589999999999999999999999999999999888999999999999999999999976 68999999999999
Q ss_pred EEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeee
Q 002564 339 RLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILR 418 (907)
Q Consensus 339 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~ 418 (907)
.+|.-....... .-+-|... .
T Consensus 86 ~iWEE~~~~~~~--------------------------------------------------~~~~Wv~~---------t 106 (361)
T KOG2445|consen 86 SIWEEQEKSEEA--------------------------------------------------HGRRWVRR---------T 106 (361)
T ss_pred eeeeeccccccc--------------------------------------------------ccceeEEE---------E
Confidence 999743111100 00111111 1
Q ss_pred cCCCCCCceEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCccceeeecccc-----ccccCcCCcEEEEEEcCCC---CE
Q 002564 419 PCPENPTAVKACTISAC--GNFAVLGTAGGWIERFNLQSGISRGSYLDMSE-----RSNYAHNGEVVGVACDSTN---TL 488 (907)
Q Consensus 419 ~~~~~~~~v~~~~~s~~--g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~-----~~~~~h~~~v~~l~~s~~~---~~ 488 (907)
......+.|+.+.|.|. |-.+++++.||.+++|+......+........ .....+..+..|+.|+|.. .+
T Consensus 107 tl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~ 186 (361)
T KOG2445|consen 107 TLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPL 186 (361)
T ss_pred EeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCce
Confidence 11133478999999985 67899999999999998765443332221100 0122466788899998743 57
Q ss_pred EEEEecC-----CeEEEEECCCCc--e--eeee-ecCcceeEEEEeeCC----CEEEEEeCCCeEEEEEcccc-------
Q 002564 489 MISAGYH-----GDIKVWDFKGRD--L--KSRW-EVGCSLVKIVYHRVN----GLLATVADDLVIRLFDVVAL------- 547 (907)
Q Consensus 489 l~s~~~d-----g~i~iwd~~~~~--~--~~~~-~~~~~i~~~~~s~~~----~~la~~~~dg~I~v~d~~~~------- 547 (907)
|+.|+.+ +.++||....+. . +.++ .+..+|+.++|.|+- .+||+++.|| |+||.+...
T Consensus 187 iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~e 265 (361)
T KOG2445|consen 187 IAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEE 265 (361)
T ss_pred EEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhh
Confidence 7777765 478999876543 2 2222 345899999999963 4899999999 999998731
Q ss_pred -------------eeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcC---CCceeeEeeeCCceEEEEECC
Q 002564 548 -------------RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI---LARQIDAIHVDVSITALSLSP 608 (907)
Q Consensus 548 -------------~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~---~~~~~~~~~~~~~v~~l~~sp 608 (907)
+.+..+.+|.+.|..+.|+-.|..|++.|.||+||+|... ..+|...+.....++...|++
T Consensus 266 e~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~~~ 342 (361)
T KOG2445|consen 266 EVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDFSQ 342 (361)
T ss_pred cccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCccccc
Confidence 3456688999999999999999999999999999999754 234556666555555555543
No 150
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=2.7e-21 Score=192.55 Aligned_cols=304 Identities=15% Similarity=0.171 Sum_probs=231.2
Q ss_pred EecCCCeEEEEEcCCCCCEEEEEEcCCC--CEEEEEecCCeEEEEEccCC---c-eEEEEeecCCCCEEEEEEecCCCCE
Q 002564 166 WNISTKKKLYEFKGWGSSISSCVSSPAL--DVVAVGCSDGKIHVHNVRYD---E-ELVTFTHSMRGAVTALAFSSDGQPL 239 (907)
Q Consensus 166 wd~~~~~~~~~~~~h~~~I~~l~~sp~~--~~la~g~~dg~I~iwd~~~~---~-~~~~~~~~~~~~v~~l~fs~dg~~~ 239 (907)
+|+.+-......+.+.++|++++|+|.. +++|+|..-|.|-+||+.+. + .+..+. .|.++|.+|.|+|.+...
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhh
Confidence 4445555666677789999999999975 48899999999999999522 2 234444 458899999999988778
Q ss_pred EEEEeCCCcEEEEECCCceeeeeeec-ccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCe
Q 002564 240 LASGASSGVISIWNLEKRRLQSVIRE-AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL 318 (907)
Q Consensus 240 l~sg~~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~ 318 (907)
+.+.+.||+|+.-|++++.....+.. .....+.++.|+.+.+.++.++.=|...+||.++.... ...+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~---~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE---YENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc---chhhhhhhcccc
Confidence 99999999999999988754444431 24456788899998888888888789999999887643 333446888999
Q ss_pred EEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEee
Q 002564 319 CIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM 397 (907)
Q Consensus 319 ~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 397 (907)
+++++| ...++++++.|++.+|||++.-....
T Consensus 327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~----------------------------------------------- 359 (498)
T KOG4328|consen 327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKA----------------------------------------------- 359 (498)
T ss_pred eeecCCCCchheeecccCcceeeeehhhhcCCC-----------------------------------------------
Confidence 999999 66789999999999999986422110
Q ss_pred CCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcE
Q 002564 398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV 477 (907)
Q Consensus 398 ~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v 477 (907)
+ | ++ . ...|...|
T Consensus 360 ---------------------------s--------p----~l-------------------s---------t~~HrrsV 372 (498)
T KOG4328|consen 360 ---------------------------S--------P----FL-------------------S---------TLPHRRSV 372 (498)
T ss_pred ---------------------------C--------c----ce-------------------e---------ccccccee
Confidence 0 0 00 0 13789999
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEECC----CCceeeeeecC------cceeEEEEeeCCCEEEEEeCCCeEEEEEcccc
Q 002564 478 VGVACDSTNTLMISAGYHGDIKVWDFK----GRDLKSRWEVG------CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL 547 (907)
Q Consensus 478 ~~l~~s~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~------~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~ 547 (907)
.+..|+|.+-.|++.+.|..|+|||.. .-.+..++.|. -......|.|+..++++|-.-..|-|+|-..+
T Consensus 373 ~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 373 NSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred eeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence 999999988889999999999999983 44555556554 23446789999999999999999999999999
Q ss_pred eeEEEeecCCC-Ceee-EEECCCCc-EEEEEeCCCcEEEEEcC
Q 002564 548 RMVRKFEGHTD-RITD-FCFSEDGK-WLLSSGMDGSLRIWDVI 587 (907)
Q Consensus 548 ~~~~~~~~h~~-~I~~-l~fspdg~-~l~s~s~Dg~I~vwd~~ 587 (907)
+.+..+..... .|.+ ..|+|-+. +++-++..|.|.||--+
T Consensus 453 q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 453 QMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred EEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 98888765543 5555 46999887 44444567888888644
No 151
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1e-20 Score=179.00 Aligned_cols=254 Identities=15% Similarity=0.203 Sum_probs=200.4
Q ss_pred EcccccceEEEEee--CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEE
Q 002564 89 WSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW 166 (907)
Q Consensus 89 ~~~h~~~V~~l~~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iw 166 (907)
-.+|.+-|+++.|| |+++++|+.|++|+|||..+..-..........|.+.+..+.+.+..|.+.+++++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 35889999999975 9999999999999999987666655556778889999999999888888999999999999999
Q ss_pred ecC---------CCeEEEEEcCCCCCEEEEEEcCC--CCEEEEEecCCeEEEEEccCCceEE------EEe------ecC
Q 002564 167 NIS---------TKKKLYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKIHVHNVRYDEELV------TFT------HSM 223 (907)
Q Consensus 167 d~~---------~~~~~~~~~~h~~~I~~l~~sp~--~~~la~g~~dg~I~iwd~~~~~~~~------~~~------~~~ 223 (907)
.-. .-....++....+.|+.+.|.|. |-.+|+++.||.++||+...--.+. .+. ..+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 641 11244567777899999999996 5689999999999999875432222 222 112
Q ss_pred CCCEEEEEEecCC--CCEEEEEeCC-----CcEEEEECCCc----eeeeeeecccccCeEEEEEecCC----CEEEEEcC
Q 002564 224 RGAVTALAFSSDG--QPLLASGASS-----GVISIWNLEKR----RLQSVIREAHDNAIISLHFFANE----PVLMSASA 288 (907)
Q Consensus 224 ~~~v~~l~fs~dg--~~~l~sg~~d-----g~I~iwd~~~~----~~~~~~~~~h~~~V~~l~~~~~~----~~l~s~~~ 288 (907)
..+..|+.|+|.. +.++|+|+.+ +.+.||....+ ..+..+. +|..+|++++|.|+- ..|++++.
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCceeeEEEeec
Confidence 4578899999752 3478888855 57889976554 3445566 899999999999963 48999999
Q ss_pred CCcEEEEEccCC----------------CCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEce
Q 002564 289 DNSIKMWIFDTT----------------DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (907)
Q Consensus 289 d~~i~vw~~~~~----------------~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~ 344 (907)
|| |+||.+... +-....+..+.+|.+.|..++|+-.|..|.+.|.||.+|+|...
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 99 999998731 11123455678999999999999999999999999999999753
No 152
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=9e-19 Score=197.01 Aligned_cols=372 Identities=26% Similarity=0.457 Sum_probs=290.2
Q ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCc-eEEEEeecCCCCEEEEEE-ecCCCCEEEEEe-CCCcEEE
Q 002564 175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAF-SSDGQPLLASGA-SSGVISI 251 (907)
Q Consensus 175 ~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~-~~~~~~~~~~~~v~~l~f-s~dg~~~l~sg~-~dg~I~i 251 (907)
..+..|...+.++.+.+.+..++.++.|+.+.+|+...+. .+..+...+...+..+.+ .+++..+++..+ .++.+.+
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 3456789999999999999999999999999999999887 666666643346777777 777763444434 4899999
Q ss_pred EECCC-ceeeeeeecccccCeEEEEEecCCCEEEEEcC-CCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCC-E
Q 002564 252 WNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-H 328 (907)
Q Consensus 252 wd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~-~ 328 (907)
|+... ......+. .|...|..+.|+|++..+++++. |+.+++|+.... ..+....+|...+.+++|+|++. .
T Consensus 139 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~ 213 (466)
T COG2319 139 WDLSTPGKLIRTLE-GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG----KPLSTLAGHTDPVSSLAFSPDGGLL 213 (466)
T ss_pred EEecCCCeEEEEEe-cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC----ceEEeeccCCCceEEEEEcCCcceE
Confidence 99998 67777777 89999999999999998888886 999999988762 45666778999999999999987 5
Q ss_pred EEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEee
Q 002564 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQ 408 (907)
Q Consensus 329 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~ 408 (907)
+++++.|+.+++|+.........
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~--------------------------------------------------------- 236 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRS--------------------------------------------------------- 236 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEee---------------------------------------------------------
Confidence 55569999999997652221110
Q ss_pred eceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc-ceeeeccccccccCcCCcEEEEEEcCCCC
Q 002564 409 NFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS-RGSYLDMSERSNYAHNGEVVGVACDSTNT 487 (907)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 487 (907)
....+.... ...+++++.++++++.++.+++|+...... ...+ ..|...+.++.++|++.
T Consensus 237 ----------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~ 297 (466)
T COG2319 237 ----------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--------SGHSSSVLSVAFSPDGK 297 (466)
T ss_pred ----------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--------ecCCccEEEEEECCCCC
Confidence 011222332 228999998999999999999999987765 3322 27889999999999888
Q ss_pred EEEEEecCCeEEEEECCCCceeeeee--cC-cceeEEEEeeCCCEEEEE-eCCCeEEEEEcccceeEEEeecCCCCeeeE
Q 002564 488 LMISAGYHGDIKVWDFKGRDLKSRWE--VG-CSLVKIVYHRVNGLLATV-ADDLVIRLFDVVALRMVRKFEGHTDRITDF 563 (907)
Q Consensus 488 ~l~s~~~dg~i~iwd~~~~~~~~~~~--~~-~~i~~~~~s~~~~~la~~-~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l 563 (907)
.+++++.|+.+++|+..+........ .+ ..+..+.+.+++..++.+ ..|+.+.+|+............+. .+..+
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~ 376 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSV 376 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEE
Confidence 88889999999999998887666654 33 458888883332555555 678899999998887333333222 28899
Q ss_pred EECCCCcEEEE-EeCCCcEEEEEcCCCceeeEeeeC-CceEEEEECCCCceEEEEEecCCeEEEeeccc
Q 002564 564 CFSEDGKWLLS-SGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (907)
Q Consensus 564 ~fspdg~~l~s-~s~Dg~I~vwd~~~~~~~~~~~~~-~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~ 630 (907)
.+++ ....+. +..++.+.+|+............. ..+....+++++..+++++.+. .+.+|+...
T Consensus 377 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 443 (466)
T COG2319 377 SFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDN-TIRLWDLKT 443 (466)
T ss_pred EECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCC-cEEEEeccC
Confidence 9999 544444 688999999999999888888777 7899999999999999987777 699999865
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.7e-21 Score=195.01 Aligned_cols=289 Identities=14% Similarity=0.223 Sum_probs=227.6
Q ss_pred CCeEEEEEccCCceEEEEeecC-CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc--eeeeeeecccccCeEEEEEec
Q 002564 202 DGKIHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--RLQSVIREAHDNAIISLHFFA 278 (907)
Q Consensus 202 dg~I~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~~~ 278 (907)
...+++||....+....+..+. ...+.++.|.......+++.+.|..+++|.-... +....-. .....-.|++...
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k-~~gd~~~Cv~~~s 89 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRK-LTGDNAFCVACAS 89 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeec-cccchHHHHhhhh
Confidence 3479999998776655555432 2358899998776423334457788999974332 1111111 1222334555555
Q ss_pred CCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhh
Q 002564 279 NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVA 358 (907)
Q Consensus 279 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 358 (907)
...++++||..+.|+|||+... .+.+.+.+|...|+++.|.-...+|++++..|.|.+..+.++....++..
T Consensus 90 ~S~y~~sgG~~~~Vkiwdl~~k----l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~---- 161 (673)
T KOG4378|consen 90 QSLYEISGGQSGCVKIWDLRAK----LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI---- 161 (673)
T ss_pred cceeeeccCcCceeeehhhHHH----HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec----
Confidence 5589999999999999999844 67788899999999999999899999999999999999887765554422
Q ss_pred HHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCE
Q 002564 359 KRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF 438 (907)
Q Consensus 359 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 438 (907)
+....++-+.+++..++
T Consensus 162 ---------------------------------------------------------------~sgqsvRll~ys~skr~ 178 (673)
T KOG4378|consen 162 ---------------------------------------------------------------DSGQSVRLLRYSPSKRF 178 (673)
T ss_pred ---------------------------------------------------------------CCCCeEEEeecccccce
Confidence 11244567788888765
Q ss_pred -EEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-CEEEEEecCCeEEEEECCCCceeeeeecCc
Q 002564 439 -AVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVGC 516 (907)
Q Consensus 439 -l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 516 (907)
|.+++.+|.|.+||++...+...+. ..|..+..+|+|+|.+ .+|++.|.|..|.+||....+....+....
T Consensus 179 lL~~asd~G~VtlwDv~g~sp~~~~~-------~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~ 251 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDVQGMSPIFHAS-------EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH 251 (673)
T ss_pred eeEeeccCCeEEEEeccCCCcccchh-------hhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecC
Confidence 4577889999999999988887776 5899999999999976 677899999999999999999999999999
Q ss_pred ceeEEEEeeCCCEEEEEeCCCeEEEEEcccc-eeEEEeecCCCCeeeEEECCCC
Q 002564 517 SLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG 569 (907)
Q Consensus 517 ~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg 569 (907)
+...++|+++|.+|++|...|.|..||++.. .++..+..|...|++++|-|..
T Consensus 252 Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 252 PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999999999999999999999999854 5788899999999999998764
No 154
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=3e-21 Score=199.66 Aligned_cols=318 Identities=17% Similarity=0.191 Sum_probs=218.0
Q ss_pred EEEEEec--CCCCEEEEEeCCCcEEEEECCCceee------eeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 002564 228 TALAFSS--DGQPLLASGASSGVISIWNLEKRRLQ------SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT 299 (907)
Q Consensus 228 ~~l~fs~--dg~~~l~sg~~dg~I~iwd~~~~~~~------~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~ 299 (907)
.+..|++ +.+++|+.+.++|.|.++|....... ... .+|.+.|..+.|.|....|++++.|.++++||+..
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCCceeEEEccCCceeeeeeecc
Confidence 3466654 45579999999999999998765332 333 38999999999999888999999999999999887
Q ss_pred CCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeE
Q 002564 300 TDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 378 (907)
Q Consensus 300 ~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 378 (907)
..... .....||.+.|.+++|.+ +...|++|+.||.+.+||++-..... +... ...........+ .|..
T Consensus 132 s~l~G--~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~-~e~~-----~~~~~~~~n~~p-tpsk- 201 (720)
T KOG0321|consen 132 SRLVG--GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA-LEEF-----DNRIYGRHNTAP-TPSK- 201 (720)
T ss_pred ceeec--ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh-HHHH-----hhhhhccccCCC-CCCc-
Confidence 64321 224679999999999999 66788899999999999997654110 0000 000000000000 0000
Q ss_pred eeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEE---EEEcCCCCEEEEEeC-CCcEEEEeCC
Q 002564 379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA---CTISACGNFAVLGTA-GGWIERFNLQ 454 (907)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~---~~~s~~g~~l~~g~~-dg~i~i~d~~ 454 (907)
. ....++-|- .+...+.+ +.+..|...|++++. |+.|++||+.
T Consensus 202 --p----------------~~kr~~k~k---------------A~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR 248 (720)
T KOG0321|consen 202 --P----------------LKKRIRKWK---------------AASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR 248 (720)
T ss_pred --h----------------hhccccccc---------------cccCceeeeeEEEEEeccceeeeccCCCcceEEEeec
Confidence 0 000111111 11223333 455567777777776 9999999998
Q ss_pred CCccceeeeccccccccCc---CCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCc--eeeeeecC---cceeEEEEeeC
Q 002564 455 SGISRGSYLDMSERSNYAH---NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD--LKSRWEVG---CSLVKIVYHRV 526 (907)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~h---~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~---~~i~~~~~s~~ 526 (907)
.................-| .-.++++..+..|.+|.+.+.|+.|++|++.+-. ++..+.+. .--..-..+|+
T Consensus 249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd 328 (720)
T KOG0321|consen 249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD 328 (720)
T ss_pred ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCC
Confidence 7665544433322222334 3468889999999999888889999999997643 22333222 22234457899
Q ss_pred CCEEEEEeCCCeEEEEEccccee-EEEeecCCCCeeeEEECCCC-cEEEEEeCCCcEEEEEcCCC
Q 002564 527 NGLLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILA 589 (907)
Q Consensus 527 ~~~la~~~~dg~I~v~d~~~~~~-~~~~~~h~~~I~~l~fspdg-~~l~s~s~Dg~I~vwd~~~~ 589 (907)
+.++++|+.|...++|.+.+.+. ...+.||.-.|++++|.|.. .-+++++.|..+++|++..+
T Consensus 329 ~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 329 DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 99999999999999999987654 56678999999999998843 34777799999999999654
No 155
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=3e-18 Score=192.75 Aligned_cols=369 Identities=27% Similarity=0.508 Sum_probs=289.6
Q ss_pred cCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe-EEEEEcCCC-CCEEEEEE-cCCCC-EEEEEec-CCeEEEEE
Q 002564 135 LDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK-KLYEFKGWG-SSISSCVS-SPALD-VVAVGCS-DGKIHVHN 209 (907)
Q Consensus 135 ~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~-~~~~~~~h~-~~I~~l~~-sp~~~-~la~g~~-dg~I~iwd 209 (907)
.+...+....+.+.+ ..++.++.++.+.+|+...+. .+..+.++. ..+..+.+ ++++. +++..+. |+.+.+|+
T Consensus 63 ~~~~~i~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 140 (466)
T COG2319 63 GHEDSITSIAFSPDG--ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWD 140 (466)
T ss_pred eccceEEEEEECCCC--cEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEE
Confidence 355566777788888 778888899999999998887 777777644 37787777 88887 5555444 89999999
Q ss_pred ccC-CceEEEEeecCCCCEEEEEEecCCCCEEEEEeC-CCcEEEEECCCceeeeeeecccccCeEEEEEecCCC-EEEEE
Q 002564 210 VRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGAS-SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSA 286 (907)
Q Consensus 210 ~~~-~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~ 286 (907)
... ......+..+ ...|.+++|+|++. .+++++. ++.+++|+...+..+..+. +|...|.+++|+|+++ .++++
T Consensus 141 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~ 217 (466)
T COG2319 141 LSTPGKLIRTLEGH-SESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLA-GHTDPVSSLAFSPDGGLLIASG 217 (466)
T ss_pred ecCCCeEEEEEecC-cccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeec-cCCCceEEEEEcCCcceEEEEe
Confidence 997 5666666655 78899999999998 7777775 9999999999988888888 7999999999999998 55555
Q ss_pred cCCCcEEEEEccCCCCCcceeE-eccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceeccc-ceeechhhhhHHHhhc
Q 002564 287 SADNSIKMWIFDTTDGDPRLLR-FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ-SRELSQRHVAKRARKL 364 (907)
Q Consensus 287 ~~d~~i~vw~~~~~~~~~~~~~-~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~ 364 (907)
+.|+.+++|+.... .... .+.+|.... ...|++++..+++++.|+.+++|+...... ...
T Consensus 218 ~~d~~i~~wd~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------------- 279 (466)
T COG2319 218 SSDGTIRLWDLSTG----KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT------------- 279 (466)
T ss_pred cCCCcEEEEECCCC----cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEE-------------
Confidence 89999999966522 3444 577888876 448999988999999999999999865433 000
Q ss_pred cchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeC
Q 002564 365 KMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA 444 (907)
Q Consensus 365 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 444 (907)
. ..|...+.++.+.|++..+++++.
T Consensus 280 ----------------------------------------------------~---~~~~~~v~~~~~~~~~~~~~~~~~ 304 (466)
T COG2319 280 ----------------------------------------------------L---SGHSSSVLSVAFSPDGKLLASGSS 304 (466)
T ss_pred ----------------------------------------------------E---ecCCccEEEEEECCCCCEEEEeeC
Confidence 0 123478899999999988888999
Q ss_pred CCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEE-ecCCeEEEEECCCCceeeeeecCcceeEEEE
Q 002564 445 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 523 (907)
Q Consensus 445 dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~ 523 (907)
++.+.+|+........... ...|...+..+.+.+++..++.+ ..|+.+.+|+...............+..+.+
T Consensus 305 d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (466)
T COG2319 305 DGTVRLWDLETGKLLSSLT------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSF 378 (466)
T ss_pred CCcEEEEEcCCCceEEEee------ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEE
Confidence 9999999888776665543 13677789999994332456555 6889999999988873333333344888888
Q ss_pred eeCCCEEEE-EeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCC
Q 002564 524 HRVNGLLAT-VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (907)
Q Consensus 524 s~~~~~la~-~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~ 588 (907)
++ ...... +..++.+.+|+............+...+....+++++..+++++.++.+++|+..+
T Consensus 379 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 379 SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 88 543343 68889999999999888877776557899999999999999999999999999988
No 156
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.9e-22 Score=208.85 Aligned_cols=282 Identities=16% Similarity=0.237 Sum_probs=212.5
Q ss_pred CcceEEEEEecCeEEEEE-cCe-EEEEeCCe------eEEEEccccc---ceEEEEe---eCCEEEEEecCCcEEEEecC
Q 002564 56 PKKIRALASYRDYTFAAY-GNH-IAVVKRAH------QVATWSRHSA---KVNLLLL---FGEHILSIDIDGNMFIWAFK 121 (907)
Q Consensus 56 ~~~I~~la~~~~~~~~a~-g~~-I~vw~~~~------~~~~~~~h~~---~V~~l~~---~g~~l~s~~~dg~v~vWd~~ 121 (907)
+..+.+|+..++-.-++. |.. ..+|.... ....+++... .+..+.| +.++|++++..|.|.+||+.
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 566788888888444333 433 55654221 1111222111 1222333 57899999999999999998
Q ss_pred CCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCC-CCEEEEEe
Q 002564 122 GIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGC 200 (907)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~-~~~la~g~ 200 (907)
..... ..+..+.-|...+....||+... ++|++|+.||+|++||++..+-..++.+....|..+.|+|. +..++++.
T Consensus 119 k~~rn-k~l~~f~EH~Rs~~~ldfh~tep-~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 119 KSIRN-KLLTVFNEHERSANKLDFHSTEP-NILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred ccccc-hhhhHhhhhccceeeeeeccCCc-cEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence 73111 11445666777778888998876 89999999999999999999999999999999999999995 67899999
Q ss_pred cCCeEEEEEccCCc-eEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecC
Q 002564 201 SDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN 279 (907)
Q Consensus 201 ~dg~I~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~ 279 (907)
..|.+++||++... ....+..| .++|.|+.|+|++. +||+|+.|+.|+|||..+++...........+|..+.|-|.
T Consensus 197 dsG~lqlWDlRqp~r~~~k~~AH-~GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~ 274 (839)
T KOG0269|consen 197 DSGYLQLWDLRQPDRCEKKLTAH-NGPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPA 274 (839)
T ss_pred CCceEEEeeccCchhHHHHhhcc-cCceEEEeecCCCc-eeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccC
Confidence 99999999998554 45555554 89999999999888 99999999999999998765443333235679999999998
Q ss_pred CC-EEEEEc--CCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEce
Q 002564 280 EP-VLMSAS--ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVI 344 (907)
Q Consensus 280 ~~-~l~s~~--~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~ 344 (907)
.+ .|++++ .|-.|+|||+..+- .....+..|...++.++|.. |...+.+++.||++..-.+.
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrRPY---IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRRPY---IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred ccchhhhhhccccceEEEEeecccc---ccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 76 566655 38899999997653 45667789999999999976 66788899999987654443
No 157
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=7.6e-23 Score=214.21 Aligned_cols=249 Identities=17% Similarity=0.249 Sum_probs=217.8
Q ss_pred CeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEEcCe---EEEEeCCeeEEE--EcccccceEEEE
Q 002564 26 TENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAHQVAT--WSRHSAKVNLLL 100 (907)
Q Consensus 26 ~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~---I~vw~~~~~~~~--~~~h~~~V~~l~ 100 (907)
......+..+..+++||.+.. ..|...+.|+..-...+++++|+. +-+|..++.... +.+|..+|.++.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~~------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~ 77 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTREF------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLT 77 (825)
T ss_pred ccccceeeeeeccccccchhh------hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeee
Confidence 344566666777888886652 246677788887677888999865 668988776444 899999999999
Q ss_pred ee--CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEc
Q 002564 101 LF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK 178 (907)
Q Consensus 101 ~~--g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~ 178 (907)
++ ...|++|+.+|+|++||++.... ++++.++......+.|||-+ .+.+.|+.|+.+.+||++...|.+.++
T Consensus 78 f~~~E~LlaagsasgtiK~wDleeAk~----vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~ 151 (825)
T KOG0267|consen 78 FDTSERLLAAGSASGTIKVWDLEEAKI----VRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYK 151 (825)
T ss_pred cCcchhhhcccccCCceeeeehhhhhh----hhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeec
Confidence 74 67888999999999999999888 77888888888899999999 788999999999999999999999999
Q ss_pred CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCce
Q 002564 179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR 258 (907)
Q Consensus 179 ~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~ 258 (907)
+|...|.+++|+|+|+++++|+.|..++|||+..|+.+..|..+ .+.+.++.|+|..- ++++|+.|+++++||+++..
T Consensus 152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~-e~~v~sle~hp~e~-Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH-EGKVQSLEFHPLEV-LLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccc-cccccccccCchhh-hhccCCCCceeeeeccceeE
Confidence 99999999999999999999999999999999999999999876 78999999999876 99999999999999999999
Q ss_pred eeeeeecccccCeEEEEEecCCCEEEEEcCC
Q 002564 259 LQSVIREAHDNAIISLHFFANEPVLMSASAD 289 (907)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d 289 (907)
.+.... .....|.+..|.|++..+++|...
T Consensus 230 ~I~s~~-~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 230 VISSGK-PETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred EeeccC-CccCCceeeeecCCceeeecCchh
Confidence 998888 668899999999999988887654
No 158
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=6.3e-23 Score=214.81 Aligned_cols=243 Identities=21% Similarity=0.371 Sum_probs=216.2
Q ss_pred EEEEeCCeeEEEEcccccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEE
Q 002564 77 IAVVKRAHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKV 154 (907)
Q Consensus 77 I~vw~~~~~~~~~~~h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l 154 (907)
+++|+..+ +..|...|.++.. .+..+++|+.|..+-+|.+..... +..+..|...+-++-|+++. ..|
T Consensus 16 Lr~~~~~~----~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~----i~S~~~hespIeSl~f~~~E--~Ll 85 (825)
T KOG0267|consen 16 LRVWDTRE----FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA----ITSLTGHESPIESLTFDTSE--RLL 85 (825)
T ss_pred cccccchh----hhhhhhhhceeeeeccceeeccCCCceeeccccccCCch----hheeeccCCcceeeecCcch--hhh
Confidence 66777544 4567777877774 678899999999999999876665 55678899999999999999 789
Q ss_pred EEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEec
Q 002564 155 IVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSS 234 (907)
Q Consensus 155 ~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~ 234 (907)
++|+.+|+|++||++.++.++++.+|...+..+.|+|-+.+.|.|+.|+.+++||.+...+.+.+.. |...|.++.|+|
T Consensus 86 aagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s-~~~vv~~l~lsP 164 (825)
T KOG0267|consen 86 AAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS-HTRVVDVLRLSP 164 (825)
T ss_pred cccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC-CcceeEEEeecC
Confidence 9999999999999999999999999999999999999999999999999999999998889999988 588899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCC
Q 002564 235 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS 314 (907)
Q Consensus 235 dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (907)
+|+ +++.|+.|..++|||+..|+....+. .|.+.+.++.|+|..-++++|+.|+++++||+++- ..+.......
T Consensus 165 ~Gr-~v~~g~ed~tvki~d~~agk~~~ef~-~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf----e~I~s~~~~~ 238 (825)
T KOG0267|consen 165 DGR-WVASGGEDNTVKIWDLTAGKLSKEFK-SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF----EVISSGKPET 238 (825)
T ss_pred CCc-eeeccCCcceeeeecccccccccccc-cccccccccccCchhhhhccCCCCceeeeecccee----EEeeccCCcc
Confidence 999 99999999999999999999999998 99999999999999999999999999999998753 4555556668
Q ss_pred CCCeEEEEecCCCEEEEEeCCC
Q 002564 315 APPLCIRFYANGRHILSAGQDR 336 (907)
Q Consensus 315 ~~v~~i~~~~~g~~l~s~~~dg 336 (907)
..|.+.+|+|++..+++|.+..
T Consensus 239 ~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 239 DGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CCceeeeecCCceeeecCchhh
Confidence 8999999999999888886653
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.3e-20 Score=188.78 Aligned_cols=292 Identities=14% Similarity=0.165 Sum_probs=231.7
Q ss_pred EEEEEEeCCeEEEEEcCcceEE--EecCCCCcceEEEEEecCe-EEEEE-c-Ce-EEEEeCCee------EEEEcccccc
Q 002564 28 NFVTVSVGKAFHIYNCAKLNLV--LVGPQLPKKIRALASYRDY-TFAAY-G-NH-IAVVKRAHQ------VATWSRHSAK 95 (907)
Q Consensus 28 ~~~~~~~~~~v~iwd~~~~~~~--~~~~~~~~~I~~la~~~~~-~~~a~-g-~~-I~vw~~~~~------~~~~~~h~~~ 95 (907)
.+.+++.+..+.+||....+.. +.....+..|.++.|.... ..+|+ + .. |++|...++ +....|....
T Consensus 4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~ 83 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAF 83 (673)
T ss_pred ceeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHH
Confidence 3667788899999999876544 3333334458999998775 44444 3 33 889975433 2224444332
Q ss_pred eEEEEeeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEE
Q 002564 96 VNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLY 175 (907)
Q Consensus 96 V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~ 175 (907)
..++.-...++++++..+.|+|||+....+ .+.++.|...+..+.+.... .+|++++..|.|.|.++.++....
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~----hr~lkdh~stvt~v~YN~~D--eyiAsvs~gGdiiih~~~t~~~tt 157 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRAKLI----HRFLKDHQSTVTYVDYNNTD--EYIASVSDGGDIIIHGTKTKQKTT 157 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHHHHH----hhhccCCcceeEEEEecCCc--ceeEEeccCCcEEEEecccCcccc
Confidence 222333578999999999999999996655 66677777666666777777 799999999999999999998888
Q ss_pred EEcCC-CCCEEEEEEcCCCC-EEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEE
Q 002564 176 EFKGW-GSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN 253 (907)
Q Consensus 176 ~~~~h-~~~I~~l~~sp~~~-~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd 253 (907)
.|... +..|.-+.|+|..+ +|.+++.+|.|.+||+....+++.+...|..+...++|+|....++++-+.|..|.+||
T Consensus 158 ~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 158 TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence 88754 45667999999876 56678899999999999888999888888999999999999988999999999999999
Q ss_pred CCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEE
Q 002564 254 LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331 (907)
Q Consensus 254 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s 331 (907)
....+....+. ...+...++|.++|.+|+.|...|.|..||++... ..+..+..|...|++++|-+.. .+++
T Consensus 238 ~~s~~s~~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k---~Pv~v~sah~~sVt~vafq~s~-tvlt 309 (673)
T KOG4378|consen 238 IRSQASTDRLT--YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK---APVAVRSAHDASVTRVAFQPSP-TVLT 309 (673)
T ss_pred cccccccceee--ecCCcceeeecCCceEEEeecCCceEEEEecccCC---CCceEeeecccceeEEEeeecc-eeee
Confidence 99888887776 66789999999999999999999999999997654 4567778999999999998865 4443
No 160
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.87 E-value=1.6e-20 Score=178.85 Aligned_cols=352 Identities=13% Similarity=0.155 Sum_probs=258.2
Q ss_pred EEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEE-EEecCCeEEEEEccCCceEEEEe
Q 002564 142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVA-VGCSDGKIHVHNVRYDEELVTFT 220 (907)
Q Consensus 142 ~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la-~g~~dg~I~iwd~~~~~~~~~~~ 220 (907)
-|.|+|++ +++++++.- ++.|-|..+.+..+.|.. -..|.-+.|..|..+++ ..+.++.|.+|++...+-...+.
T Consensus 13 ~c~fSp~g--~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId 88 (447)
T KOG4497|consen 13 FCSFSPCG--NYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID 88 (447)
T ss_pred ceeECCCC--Ceeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec
Confidence 68899999 999999776 788999888776665544 45677888988876554 56778999999999888888888
Q ss_pred ecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 002564 221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (907)
Q Consensus 221 ~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~ 300 (907)
.+ ..++.+++|||||+.+|.+...+-.|.+|.+.+.+....-. ....+..++|+|||++.+.++.-......++..
T Consensus 89 eg-~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~- 164 (447)
T KOG4497|consen 89 EG-QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS- 164 (447)
T ss_pred cC-CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCCceeeeeecccHHHHHHHHh-
Confidence 77 67899999999998788898899999999999887665443 344669999999999988887532111111110
Q ss_pred CCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEee
Q 002564 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380 (907)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 380 (907)
...+.+++.+.-.+-..+.+.|+|||..|+. ||..-..
T Consensus 165 c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Ley--------------------------------- 202 (447)
T KOG4497|consen 165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEY--------------------------------- 202 (447)
T ss_pred hHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhh---------------------------------
Confidence 1123455555566677889999999987764 4421100
Q ss_pred ecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccce
Q 002564 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG 460 (907)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~ 460 (907)
.++.|. -.-.+..++++|+++++++|+.|+.+++.|--+-+...
T Consensus 203 --------------------kv~aYe----------------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ 246 (447)
T KOG4497|consen 203 --------------------KVYAYE----------------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFG 246 (447)
T ss_pred --------------------eeeeee----------------eccceeEEEeccccceEEeeccchhhhhhceeeeeehh
Confidence 000000 01568889999999999999999999887654433322
Q ss_pred eeeccccc----------------------------------------------------------cccCcCCcEEEEEE
Q 002564 461 SYLDMSER----------------------------------------------------------SNYAHNGEVVGVAC 482 (907)
Q Consensus 461 ~~~~~~~~----------------------------------------------------------~~~~h~~~v~~l~~ 482 (907)
.|...... ........+.-++|
T Consensus 247 eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~laf 326 (447)
T KOG4497|consen 247 EFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAF 326 (447)
T ss_pred hhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeee
Confidence 22111000 11122345778999
Q ss_pred cCCCCEEEEEec--CCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCe
Q 002564 483 DSTNTLMISAGY--HGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 560 (907)
Q Consensus 483 s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I 560 (907)
++|..+++|-.. -+.+.+||+...++...+....+|....|+|....|+++.....+++|.......+.. .+..-.|
T Consensus 327 s~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i 405 (447)
T KOG4497|consen 327 SCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNI 405 (447)
T ss_pred cCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCCCcee
Confidence 999999888653 3679999999988888887789999999999988888888888899998876555543 3334679
Q ss_pred eeEEECCCCcEEEEEeCCCc
Q 002564 561 TDFCFSEDGKWLLSSGMDGS 580 (907)
Q Consensus 561 ~~l~fspdg~~l~s~s~Dg~ 580 (907)
.+++|..+|..++-.+.|..
T Consensus 406 ~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 406 QKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred eeEEecCCCcEEEEEcCCce
Confidence 99999999999999998864
No 161
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=2.8e-20 Score=177.61 Aligned_cols=333 Identities=15% Similarity=0.209 Sum_probs=228.4
Q ss_pred EcccccceEEEEee-------CCEEEEEecCCcEEEEecCCCCccccceeeEe--cCCCcccEEEEcCCCC--CCEEEEE
Q 002564 89 WSRHSAKVNLLLLF-------GEHILSIDIDGNMFIWAFKGIEENLAPVGHVK--LDDKFTPTCIMHPDTY--LNKVIVG 157 (907)
Q Consensus 89 ~~~h~~~V~~l~~~-------g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~--~~~l~~~ 157 (907)
...|..+|..++|+ -+-+++++ .+.+.+|+.....-.. .+.... -+.....+|++.-+.+ ..++|+|
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir-~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIR-LLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcccee-eeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 45677777777763 23344444 5667777765543200 011111 1233445677665543 2578889
Q ss_pred ecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEEccCCceEEEEe--ecCCCCEEEEEEec
Q 002564 158 SQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYDEELVTFT--HSMRGAVTALAFSS 234 (907)
Q Consensus 158 s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~-~~la~g~~dg~I~iwd~~~~~~~~~~~--~~~~~~v~~l~fs~ 234 (907)
+.-|.|+|.|+.++++...+.+|+..|+.+.+.|+. ++|++++.|..|++||++++.++..|- .+|.+.|.++.|++
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence 999999999999999999999999999999999975 689999999999999999999998887 35688999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCC
Q 002564 235 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS 314 (907)
Q Consensus 235 dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (907)
+|. .+++++.|.+|++|++...+....+. .+..|+|++...- +.+.........+..-|.
T Consensus 192 ~gd-~i~ScGmDhslk~W~l~~~~f~~~lE-------~s~~~~~~~t~~p------------fpt~~~~fp~fst~diHr 251 (385)
T KOG1034|consen 192 DGD-RIASCGMDHSLKLWRLNVKEFKNKLE-------LSITYSPNKTTRP------------FPTPKTHFPDFSTTDIHR 251 (385)
T ss_pred CCC-eeeccCCcceEEEEecChhHHhhhhh-------hhcccCCCCccCc------------CCcccccccccccccccc
Confidence 999 89999999999999998766554444 2255666653211 111111111122445799
Q ss_pred CCCeEEEEecCCCEEEEEeCCCCEEEEEceecccc-eeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceE
Q 002564 315 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS-RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV 393 (907)
Q Consensus 315 ~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 393 (907)
..|.|++|.. .++++-+.++.|..|..-.-... .... +| +....
T Consensus 252 nyVDCvrw~g--d~ilSkscenaI~~w~pgkl~e~~~~vk--------------------p~------------es~~T- 296 (385)
T KOG1034|consen 252 NYVDCVRWFG--DFILSKSCENAIVCWKPGKLEESIHNVK--------------------PP------------ESATT- 296 (385)
T ss_pred chHHHHHHHh--hheeecccCceEEEEecchhhhhhhccC--------------------CC------------cccee-
Confidence 9999999984 69999999999999976211110 0000 00 00000
Q ss_pred EEeeCCceEEEEEeeeceecceeeecCCCCCCc--eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeecccccccc
Q 002564 394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA--VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY 471 (907)
Q Consensus 394 ~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 471 (907)
.+.-+++ .... ....++.+.++.|+.|...|.|++||+........-.. .-.
T Consensus 297 -------i~~~~~~---------------~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl----~~s 350 (385)
T KOG1034|consen 297 -------ILGEFDY---------------PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL----THS 350 (385)
T ss_pred -------eeeEecc---------------CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE----Eec
Confidence 0111111 1122 33457788899999999999999999988766321110 001
Q ss_pred CcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (907)
Q Consensus 472 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 504 (907)
.....|...+|+.|+.+|+....|++|.-||.-
T Consensus 351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 234579999999999999999999999999853
No 162
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.86 E-value=8.5e-20 Score=173.75 Aligned_cols=285 Identities=17% Similarity=0.238 Sum_probs=212.2
Q ss_pred CeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCc----c-----eeEeccCCCCCCeEEEEe-------cCCCEEEEEe
Q 002564 270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP----R-----LLRFRSGHSAPPLCIRFY-------ANGRHILSAG 333 (907)
Q Consensus 270 ~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~----~-----~~~~~~~h~~~v~~i~~~-------~~g~~l~s~~ 333 (907)
-...+.|+|||..|++-+.|+.+.+|++....... . ...........|...+|. |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 45678999999999999999999999875432110 0 111111233456777776 5678899999
Q ss_pred CCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceec
Q 002564 334 QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG 413 (907)
Q Consensus 334 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~ 413 (907)
++.-|++||..+++....+..-....
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~d------------------------------------------------------ 156 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQD------------------------------------------------------ 156 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHH------------------------------------------------------
Confidence 99999999998887655543211000
Q ss_pred ceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeC-CCCccceeeeccccccccCcCCcEEEEEEcCCC-CEEEE
Q 002564 414 EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL-QSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMIS 491 (907)
Q Consensus 414 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s 491 (907)
.-....+++|+|||..|++|. +..|++||+ +.|..-..+.... ....+..+-|.+++|+|.. +.++.
T Consensus 157 ---------e~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~-~~k~gq~giisc~a~sP~~~~~~a~ 225 (406)
T KOG2919|consen 157 ---------EYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT-KGKFGQKGIISCFAFSPMDSKTLAV 225 (406)
T ss_pred ---------hhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhh-cccccccceeeeeeccCCCCcceee
Confidence 014567899999999999885 568999999 5555443332110 0112447789999999965 58999
Q ss_pred EecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeC-CCeEEEEEccc-ceeEEEeecCCC-CeeeE--EE
Q 002564 492 AGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD-DLVIRLFDVVA-LRMVRKFEGHTD-RITDF--CF 565 (907)
Q Consensus 492 ~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~-dg~I~v~d~~~-~~~~~~~~~h~~-~I~~l--~f 565 (907)
++...++-|+.-..+.++..+..+ +.|+.++|+++|+.|.+|.. |-.|..||++. +.++..+..|.+ .=..| ..
T Consensus 226 gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDl 305 (406)
T KOG2919|consen 226 GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDL 305 (406)
T ss_pred ecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEec
Confidence 999999999998888888777544 89999999999999999876 67899999975 456777877765 22334 45
Q ss_pred CCCCcEEEEEeCCCcEEEEEcCC-CceeeEeeeCCc-eEEEEECCCCceEEEEEec
Q 002564 566 SEDGKWLLSSGMDGSLRIWDVIL-ARQIDAIHVDVS-ITALSLSPNMDVLATAHVD 619 (907)
Q Consensus 566 spdg~~l~s~s~Dg~I~vwd~~~-~~~~~~~~~~~~-v~~l~~spdg~~lat~~~d 619 (907)
.|+|++|++|+.||.|++||+++ |..+..+..++. +..++++|--..+||++..
T Consensus 306 d~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 306 DPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 78999999999999999999998 776766665554 9999999998888888754
No 163
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=3.8e-20 Score=179.79 Aligned_cols=249 Identities=20% Similarity=0.308 Sum_probs=191.7
Q ss_pred EcccccceEEEEe----eCCEEEEEecCCcEEEEecCCCC------------ccccceeeEecCCCcccEEEEcCCCCCC
Q 002564 89 WSRHSAKVNLLLL----FGEHILSIDIDGNMFIWAFKGIE------------ENLAPVGHVKLDDKFTPTCIMHPDTYLN 152 (907)
Q Consensus 89 ~~~h~~~V~~l~~----~g~~l~s~~~dg~v~vWd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 152 (907)
..+|.+.+..+.. +....++-+..|.|.||++.... ....|+.++..|........|+|..+ .
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~-g 225 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT-G 225 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc-c
Confidence 4567777777763 34567777889999999985421 12356778888888888899999665 6
Q ss_pred EEEEEecCCcEEEEecCCCeE---EEEEcCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEEccCCc-eEEEEeecCCCCE
Q 002564 153 KVIVGSQEGSLQLWNISTKKK---LYEFKGWGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAV 227 (907)
Q Consensus 153 ~l~~~s~dg~i~iwd~~~~~~---~~~~~~h~~~I~~l~~sp~~-~~la~g~~dg~I~iwd~~~~~-~~~~~~~~~~~~v 227 (907)
.+++|..-+.|++|...+|.= ...|.+|+..|-.++|||.. .++|+|+.||+|+|||++.+. ....+...|.+.|
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDV 305 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDV 305 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCce
Confidence 789998888999999988653 23467899999999999965 589999999999999999883 2222224457899
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEECCC---ceeeeeeecccccCeEEEEEecCC-CEEEEEcCCCcEEEEEccCCCC-
Q 002564 228 TALAFSSDGQPLLASGASSGVISIWNLEK---RRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDG- 302 (907)
Q Consensus 228 ~~l~fs~dg~~~l~sg~~dg~I~iwd~~~---~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~- 302 (907)
..++|+.+-. +||+|+.||+++|||++. ++++..+. -|..+|+++.|+|.. ..++++|.|++|.+||+.....
T Consensus 306 NVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ 383 (440)
T KOG0302|consen 306 NVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADE 383 (440)
T ss_pred eeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCCh
Confidence 9999999888 999999999999999975 46778888 899999999999954 5788889999999999865422
Q ss_pred --------------CcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEE
Q 002564 303 --------------DPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFS 342 (907)
Q Consensus 303 --------------~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd 342 (907)
.++++. ...-...+..+.|++ ...++++.+.|| +.+|.
T Consensus 384 ee~~~~a~~~L~dlPpQLLF-VHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 384 EEIDQEAAEGLQDLPPQLLF-VHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred hhhccccccchhcCCceeEE-EecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 112222 112245678889998 445888888888 55554
No 164
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.5e-20 Score=183.35 Aligned_cols=241 Identities=17% Similarity=0.319 Sum_probs=184.2
Q ss_pred CCEEEEEecCCcEEEEecCCCCccccc--ee---------------eEecCCCcccEEEEcCCCCCCEEEEEecCCcEEE
Q 002564 103 GEHILSIDIDGNMFIWAFKGIEENLAP--VG---------------HVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL 165 (907)
Q Consensus 103 g~~l~s~~~dg~v~vWd~~~~~~~~~~--~~---------------~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~i 165 (907)
|+++|.|..|-.|.|||++-.....+. +. .-..|...+..+.+..... +.|++||.|.+|.+
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~-nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR-NVLASGSADKTVKL 270 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc-eeEEecCCCceEEE
Confidence 789999999999999998754332111 00 0012232333333433332 78999999999999
Q ss_pred EecCCCeEEEEEcCCCCCEEEEEEcCC-CCEEEEEecCCeEEEEEccCC-ceEEEEeecCCCCEEEEEEecCCCCEEEEE
Q 002564 166 WNISTKKKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDGKIHVHNVRYD-EELVTFTHSMRGAVTALAFSSDGQPLLASG 243 (907)
Q Consensus 166 wd~~~~~~~~~~~~h~~~I~~l~~sp~-~~~la~g~~dg~I~iwd~~~~-~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg 243 (907)
||+.+|++..++..|+..|.++.|+|. ..+|++|+.|++|.+.|.+.. ..-..+.. .+.|-.++|.|.....++++
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~--~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF--DGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe--ccceEEEEecCCCceeEEEe
Confidence 999999999999999999999999995 579999999999999999842 22223333 47899999999998888999
Q ss_pred eCCCcEEEEECCCc-eeeeeeecccccCeEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEE
Q 002564 244 ASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR 321 (907)
Q Consensus 244 ~~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~ 321 (907)
..||+|+-+|++.. +++.+++ +|.++|.++++++.-+ ++++++.|+.|++|+++.... +.+....-.-+...|.+
T Consensus 349 tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~--~~v~~~~~~~~rl~c~~ 425 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP--KSVKEHSFKLGRLHCFA 425 (463)
T ss_pred cCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeeccccceEEEEeecCCCC--cccccccccccceeecc
Confidence 99999999999876 8999998 9999999999998654 788999999999999986654 23322222233467777
Q ss_pred EecCC-CEEEEEeCCCCEEEEEceecccc
Q 002564 322 FYANG-RHILSAGQDRAFRLFSVIQDQQS 349 (907)
Q Consensus 322 ~~~~g-~~l~s~~~dg~i~iwd~~~~~~~ 349 (907)
+.|+- -.++.|+..+.+++||+.+....
T Consensus 426 ~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 426 LDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cCCCcceEEEecCccceEEEeecccChhH
Confidence 88854 45677888888999999776543
No 165
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=2.6e-20 Score=177.78 Aligned_cols=323 Identities=17% Similarity=0.231 Sum_probs=220.5
Q ss_pred cCCCCCEEEEEEcC-----CCCEEEEEecCCeEEEEEccCCc---eEEEEee-cCCCCEEEEEEecC---CCCEEEEEeC
Q 002564 178 KGWGSSISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYDE---ELVTFTH-SMRGAVTALAFSSD---GQPLLASGAS 245 (907)
Q Consensus 178 ~~h~~~I~~l~~sp-----~~~~la~g~~dg~I~iwd~~~~~---~~~~~~~-~~~~~v~~l~fs~d---g~~~l~sg~~ 245 (907)
..|+.+|..++|++ +.+.+|+.+. ..+.+|+....- .++.+.. .+......++|+-| +.+++|+|+.
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence 46789999999985 2346666665 578999887544 2333332 24667888888764 4568999999
Q ss_pred CCcEEEEECCCceeeeeeecccccCeEEEEEecCC-CEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec
Q 002564 246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 324 (907)
Q Consensus 246 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~ 324 (907)
-|.|+|.|+.++++...+. +|...|+.+.+.|+. +++++++.|.+|++|++.+.... .+..-..||.+.|.++.|++
T Consensus 114 ~GvIrVid~~~~~~~~~~~-ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv-~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSKNYR-GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV-AVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred eeEEEEEecchhhhcccee-ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE-EEecccccccCcEEEEEEcC
Confidence 9999999999999999999 999999999999976 58899999999999999876321 12233468999999999999
Q ss_pred CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEE
Q 002564 325 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV 404 (907)
Q Consensus 325 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 404 (907)
+|.+++++|.|.+|++|++...+....+... ..........++|..
T Consensus 192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s------~~~~~~~t~~pfpt~---------------------------- 237 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRLNVKEFKNKLELS------ITYSPNKTTRPFPTP---------------------------- 237 (385)
T ss_pred CCCeeeccCCcceEEEEecChhHHhhhhhhh------cccCCCCccCcCCcc----------------------------
Confidence 9999999999999999998754332211110 000000000000000
Q ss_pred EEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeC-CCCccceeeeccccc-----cccCcCCcEE
Q 002564 405 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL-QSGISRGSYLDMSER-----SNYAHNGEVV 478 (907)
Q Consensus 405 w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~-~~~~~~~~~~~~~~~-----~~~~h~~~v~ 478 (907)
......+...+-|...|.|+.|- |+++++-+-++.|..|.. +-++........... ...-....|.
T Consensus 238 ------~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iW 309 (385)
T KOG1034|consen 238 ------KTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIW 309 (385)
T ss_pred ------ccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceE
Confidence 00001111122344556666554 588888888899999987 222221111100000 0011223344
Q ss_pred E--EEEcCCCCEEEEEecCCeEEEEECCCCceee--eeec---CcceeEEEEeeCCCEEEEEeCCCeEEEEEcc
Q 002564 479 G--VACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RWEV---GCSLVKIVYHRVNGLLATVADDLVIRLFDVV 545 (907)
Q Consensus 479 ~--l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~---~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~ 545 (907)
- .+|++-++.|+.|...|.|.+||++..++.. ++.+ ...|...+|+.|+.+|+..++|++|.-||..
T Consensus 310 firf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 310 FIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 4 4567778999999999999999999876632 2222 3789999999999999999999999999864
No 166
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.85 E-value=9.2e-20 Score=173.75 Aligned_cols=342 Identities=13% Similarity=0.170 Sum_probs=244.8
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeec
Q 002564 186 SCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE 265 (907)
Q Consensus 186 ~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~ 265 (907)
-+.|||+|+++|+++.- .+.|-|..+-+..+.|..- ..|..+.|..|..++|.....++.|.+|++...+-...+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl--dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId- 88 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL--DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID- 88 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH--HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec-
Confidence 46899999999999875 7888888877765555443 5788999999998788888899999999999999888888
Q ss_pred ccccCeEEEEEecCCCEE-EEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEce
Q 002564 266 AHDNAIISLHFFANEPVL-MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (907)
Q Consensus 266 ~h~~~V~~l~~~~~~~~l-~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~ 344 (907)
....++.+++|+|||+.+ .+...|-.|.+|.+.+..+ ..+ .-....+..++|+|||++.+.+++-...-..++.
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~--~~~---~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~ 163 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG--YLL---PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS 163 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEecccee--EEe---cccccCceeEEECCCCceeeeeecccHHHHHHHH
Confidence 667789999999999655 5556689999999887643 122 2233456899999999998887654211111110
Q ss_pred ecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCC
Q 002564 345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 424 (907)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~ 424 (907)
..+ + -..+....-..
T Consensus 164 ~c~----------------------------------------~-------------------------W~ll~~f~~dT 178 (447)
T KOG4497|consen 164 SCK----------------------------------------A-------------------------WILLKEFKLDT 178 (447)
T ss_pred hhH----------------------------------------H-------------------------HHHHHhcCCCc
Confidence 000 0 00011111122
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (907)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 504 (907)
-..+.+.|+|||+.+++=.+-=.-.+| . ....-.+..++|+|.+++|+.|+.|+.+|+.+--
T Consensus 179 ~DltgieWsPdg~~laVwd~~Leykv~---------a---------Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 179 IDLTGIEWSPDGNWLAVWDNVLEYKVY---------A---------YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred ccccCceECCCCcEEEEecchhhheee---------e---------eeeccceeEEEeccccceEEeeccchhhhhhcee
Confidence 456788999999998864321111111 1 1233568889999999999999999999886422
Q ss_pred CCcee------------------------------------------------------------eeee-------cCcc
Q 002564 505 GRDLK------------------------------------------------------------SRWE-------VGCS 517 (907)
Q Consensus 505 ~~~~~------------------------------------------------------------~~~~-------~~~~ 517 (907)
+-+.. ..++ ....
T Consensus 241 tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g 320 (447)
T KOG4497|consen 241 TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG 320 (447)
T ss_pred eeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccc
Confidence 11100 0000 0145
Q ss_pred eeEEEEeeCCCEEEEEeCC--CeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEe
Q 002564 518 LVKIVYHRVNGLLATVADD--LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI 595 (907)
Q Consensus 518 i~~~~~s~~~~~la~~~~d--g~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~ 595 (907)
+..++|++|+.++|+-.+. +.+.+||++..++...+. ...+|....|.|....|+.+.....+.+|......++..-
T Consensus 321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP 399 (447)
T KOG4497|consen 321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP 399 (447)
T ss_pred cceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC
Confidence 6789999999999988654 589999999887766554 5578999999998888887777778999997665555554
Q ss_pred eeCCceEEEEECCCCceEEEEEecC
Q 002564 596 HVDVSITALSLSPNMDVLATAHVDQ 620 (907)
Q Consensus 596 ~~~~~v~~l~~spdg~~lat~~~d~ 620 (907)
...-.|..+.|.-+|++++..+.|.
T Consensus 400 ~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 400 KKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred CCCceeeeEEecCCCcEEEEEcCCc
Confidence 4445699999999999999999987
No 167
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=7.7e-20 Score=175.73 Aligned_cols=287 Identities=19% Similarity=0.324 Sum_probs=208.3
Q ss_pred CEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcC--CCCEEEEEecCCeEEEEEccCCceEEEEe--ecCCCCE
Q 002564 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFT--HSMRGAV 227 (907)
Q Consensus 152 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp--~~~~la~g~~dg~I~iwd~~~~~~~~~~~--~~~~~~v 227 (907)
+.++++..+|.|++||..+++.+..|+++...++.+.|.. ....+.+|+.||.|++||+++......+. ++...+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5699999999999999999999999999999999999977 46789999999999999999877655554 3323467
Q ss_pred EEEEEecCCCCEEEEEe----CCCcEEEEECCCcee-eeeeecccccCeEEEEEecCC-CEEEEEcCCCcEEEEEccCCC
Q 002564 228 TALAFSSDGQPLLASGA----SSGVISIWNLEKRRL-QSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTD 301 (907)
Q Consensus 228 ~~l~fs~dg~~~l~sg~----~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~ 301 (907)
.+++....++ ++++|. .+-.|.+||++..+. +..+...|...|+++.|+|.. ++|++|+.||-|.++|+....
T Consensus 121 ~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 7877776666 788876 466899999998866 788888999999999999965 589999999999999988765
Q ss_pred CCcceeEeccCCCCCCeEEEEecCC-CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEee
Q 002564 302 GDPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFD 380 (907)
Q Consensus 302 ~~~~~~~~~~~h~~~v~~i~~~~~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 380 (907)
..-.++... .|...|.++.|..++ +.|.+-+..++..+|++..+.....+..+......
T Consensus 200 EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d------------------- 259 (376)
T KOG1188|consen 200 EEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADD------------------- 259 (376)
T ss_pred chhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhh-------------------
Confidence 544444444 677889999999876 56888899999999999888755544432111100
Q ss_pred ecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEE-EEEeCCCcEEEEeCC---CC
Q 002564 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFA-VLGTAGGWIERFNLQ---SG 456 (907)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~g~~dg~i~i~d~~---~~ 456 (907)
.+..+.. ..+.......++... +.|+..|...++-+. ++
T Consensus 260 ---~r~~~~~----------------------------------dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~ 302 (376)
T KOG1188|consen 260 ---LRKEDNC----------------------------------DYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSG 302 (376)
T ss_pred ---HHhhhhh----------------------------------hheeecccCCCcceEEEeccccCceeEEEeeecccc
Confidence 0000000 001111111122333 333334555554433 22
Q ss_pred c---cceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 002564 457 I---SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (907)
Q Consensus 457 ~---~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 503 (907)
. ....+. .+|..-|+++.|...+.++.|||.||.+.+|..
T Consensus 303 ~~~~~~a~l~-------g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 303 SLLTEPAILQ-------GGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cccCcccccc-------CCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 2 222232 357788999999999999999999999999985
No 168
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.84 E-value=1.7e-18 Score=175.52 Aligned_cols=437 Identities=18% Similarity=0.201 Sum_probs=272.0
Q ss_pred cccccceEEEEeeC-CEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCC-------CCCCEEEEEecCC
Q 002564 90 SRHSAKVNLLLLFG-EHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPD-------TYLNKVIVGSQEG 161 (907)
Q Consensus 90 ~~h~~~V~~l~~~g-~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~l~~~s~dg 161 (907)
..|...|.++.+.+ .-++.++.|..+.+|.-.+.+. ...+..+..++.+..+ +. +....+++++.||
T Consensus 11 ~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s----~~~~~~p~df~pt~~h-~~~rs~~~g~~~d~~~i~s~DG 85 (737)
T KOG1524|consen 11 NRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS----VEVAKLPDDFVPTDMH-LGGRSSGGGKGSDTLLICSNDG 85 (737)
T ss_pred cccceeEEeecccccceEEEeccCceEEEeecccchh----hhhhhCCcccCCcccc-ccccccCCCCCcceEEEEcCCc
Confidence 35666677777643 3455555577766665444333 2223333333333321 21 1235789999999
Q ss_pred cEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEE
Q 002564 162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA 241 (907)
Q Consensus 162 ~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~ 241 (907)
.+.+.+ +.++.-.....|.+.|.|-.|+|+|.-|+++++||.|++|. ++|-...++.+. ..+|+|++|.|+...++.
T Consensus 86 kf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~-~~~v~c~~W~p~S~~vl~ 162 (737)
T KOG1524|consen 86 RFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQN-EESIRCARWAPNSNSIVF 162 (737)
T ss_pred eEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhc-CceeEEEEECCCCCceEE
Confidence 999998 68888889999999999999999999999999999999998 445544444443 578999999999986666
Q ss_pred EEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEE
Q 002564 242 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR 321 (907)
Q Consensus 242 sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~ 321 (907)
+.+ +.+.|=.+.....+-..+ +|++-|.++.|++..+++++||.|-..++||-.. +.+.....|..+|++++
T Consensus 163 c~g--~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-----~~Lf~S~~~ey~ITSva 234 (737)
T KOG1524|consen 163 CQG--GHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-----ANLFTSAAEEYAITSVA 234 (737)
T ss_pred ecC--CeEEEeecccccceeEEe-ccCcEEEEeecCccccceeecCCceeEEeecccC-----cccccCChhccceeeee
Confidence 554 678887777776677777 9999999999999999999999999999996432 45666678999999999
Q ss_pred EecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCce
Q 002564 322 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQ 401 (907)
Q Consensus 322 ~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (907)
|.|+ +.++.++.+ ++|+=
T Consensus 235 ~npd-~~~~v~S~n-t~R~~------------------------------------------------------------ 252 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-TARFS------------------------------------------------------------ 252 (737)
T ss_pred eccc-cceeeeeee-eeeec------------------------------------------------------------
Confidence 9999 555555432 22210
Q ss_pred EEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----cceeeeccccc--------
Q 002564 402 AYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI-----SRGSYLDMSER-------- 468 (907)
Q Consensus 402 v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~-----~~~~~~~~~~~-------- 468 (907)
....+.|..++||+||..+++|+..|.+.+-..-..+ ...........
T Consensus 253 -------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~ 313 (737)
T KOG1524|consen 253 -------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSITVRDVATG 313 (737)
T ss_pred -------------------CCCccceEEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEeeccceEEeehhhhh
Confidence 1123789999999999999999999987653221111 00000000000
Q ss_pred --cccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeec-------------------CcceeE------E
Q 002564 469 --SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV-------------------GCSLVK------I 521 (907)
Q Consensus 469 --~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------------~~~i~~------~ 521 (907)
..-.....|...+..- ..|+++.. ..+++|.-........++. ...|+- .
T Consensus 314 v~d~LE~p~rv~k~sL~Y--~hLvvaTs-~qvyiys~knwntpiiidgre~tr~lieq~ek~fli~dgsSi~lytyegR~ 390 (737)
T KOG1524|consen 314 VQDILEFPQRVVKFSLGY--GHLVVATS-LQVYIYSEKNWNTPIIIDGREDTRNLIEQGEKYFLILDGSSIWLYTYEGRL 390 (737)
T ss_pred HHHHhhCccceeeeeece--eEEEEEec-cEEEEEecCCccCcEEEeccccchhHhhhhhhheEEecCcEEEEEEecCce
Confidence 0011223344444322 23333332 3455554332211111110 011110 0
Q ss_pred EEee-----------------CCCEEEEE--eCCCeEEEEEc-ccceeEE--EeecCCCCeeeEEECC----CCcEEEEE
Q 002564 522 VYHR-----------------VNGLLATV--ADDLVIRLFDV-VALRMVR--KFEGHTDRITDFCFSE----DGKWLLSS 575 (907)
Q Consensus 522 ~~s~-----------------~~~~la~~--~~dg~I~v~d~-~~~~~~~--~~~~h~~~I~~l~fsp----dg~~l~s~ 575 (907)
.++| ....|+.- .+...+++||. .+++... .+-.|...|..++... +.+.++.-
T Consensus 391 ~~np~~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFi 470 (737)
T KOG1524|consen 391 HLNPRYPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFI 470 (737)
T ss_pred ecCCCCCCcccccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEE
Confidence 1111 11223322 22335667776 5555432 1223666677776654 45677777
Q ss_pred eCCCcEEEEEcCC-CceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeec
Q 002564 576 GMDGSLRIWDVIL-ARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (907)
Q Consensus 576 s~Dg~I~vwd~~~-~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~ 628 (907)
...+.+.|=.+++ |+.-..++...-|..++|+...+.| .+-.|+ .+.+|-.
T Consensus 471 Dknrdl~ItsvKrfgkee~I~KiGTmVhtLawndttNiL-cglqDt-~fsVWy~ 522 (737)
T KOG1524|consen 471 DKNRDLFITSVKRFGKEEEIYKIGTMVHTLAWNDTTNIL-CGLQDT-CFSVWYY 522 (737)
T ss_pred ecCCcEEEEeehhcCchhhhhhhhhhhhhhhhcccccee-eeeccc-eEEEEEc
Confidence 7777777776654 3333444555668899998776655 455566 3899964
No 169
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=8.5e-19 Score=172.41 Aligned_cols=328 Identities=19% Similarity=0.238 Sum_probs=213.3
Q ss_pred CCCEEEEEEcCCCC-EEEEEecCCeEEEEEccCCce---------EEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEE
Q 002564 181 GSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEE---------LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS 250 (907)
Q Consensus 181 ~~~I~~l~~sp~~~-~la~g~~dg~I~iwd~~~~~~---------~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~ 250 (907)
..+|..+.|.++.. .+|+|+.|..|++|-+..+.. +..+ ..|...|+++.|+|+|. +||+|+.+|.|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L-s~H~~aVN~vRf~p~ge-lLASg~D~g~v~ 90 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL-SRHTRAVNVVRFSPDGE-LLASGGDGGEVF 90 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecc-cCCcceeEEEEEcCCcC-eeeecCCCceEE
Confidence 56888999988776 999999999999998864321 2223 33578999999999999 999999999999
Q ss_pred EEECC--------C--------ceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCC
Q 002564 251 IWNLE--------K--------RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS 314 (907)
Q Consensus 251 iwd~~--------~--------~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (907)
+|-.. + ......+. +|...|..++|+|++.++++++.|+++++||+..+ .+...+.+|.
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr-~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G----~l~~~~~dh~ 165 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLR-GHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG----QLLAILDDHE 165 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEec-ccccchhhhhccCCCceeeeeeccceEEEEEeccc----eeEeeccccc
Confidence 99765 2 12333444 89999999999999999999999999999999876 6788889999
Q ss_pred CCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEE
Q 002564 315 APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT 394 (907)
Q Consensus 315 ~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 394 (907)
..+..++|.|-++++++-+.|+..+.+++...+............ . ..
T Consensus 166 ~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~----------------------~----------~~ 213 (434)
T KOG1009|consen 166 HYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPA----------------------K----------AF 213 (434)
T ss_pred cccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeee----------------------c----------cc
Confidence 999999999999999999999988888776554433322100000 0 00
Q ss_pred EeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeC----CCcE-----EEEeCCCCccceeeecc
Q 002564 395 CHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA----GGWI-----ERFNLQSGISRGSYLDM 465 (907)
Q Consensus 395 ~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~----dg~i-----~i~d~~~~~~~~~~~~~ 465 (907)
.+......+++.-. .-+.....++|+|||..+++... .|.+ ++|+-..-..
T Consensus 214 ~~~e~~s~rLfhDe-------------TlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~r------- 273 (434)
T KOG1009|consen 214 NEREGKSTRLFHDE-------------TLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKR------- 273 (434)
T ss_pred CCCCcceeeeeecC-------------chhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccC-------
Confidence 00011111111111 11244567788899988887532 1111 1222110000
Q ss_pred ccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcc
Q 002564 466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV 545 (907)
Q Consensus 466 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~ 545 (907)
+......-..++..+.++|- .|.+..... .+ .+.--|-+-.+|+++. ..|+|||.+
T Consensus 274 P~~~lp~~~k~~lavr~~pV--------------y~elrp~~~-------~~--~~~~lpyrlvfaiAt~-~svyvydtq 329 (434)
T KOG1009|consen 274 PAARLPSPKKPALAVRFSPV--------------YYELRPLSS-------EK--FLFVLPYRLVFAIATK-NSVYVYDTQ 329 (434)
T ss_pred ceeecCCCCcceEEEEeeee--------------EEEeccccc-------cc--cccccccceEEEEeec-ceEEEeccc
Confidence 00000112222222333221 111110000 00 0111233445556654 589999999
Q ss_pred cceeEEEeec-CCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCce
Q 002564 546 ALRMVRKFEG-HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 591 (907)
Q Consensus 546 ~~~~~~~~~~-h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~ 591 (907)
+..++..... |-..|++++|++||..|+..|.||...+--++..++
T Consensus 330 ~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 330 TLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred cccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 9887776653 889999999999999999999999877766655443
No 170
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=2.7e-19 Score=173.97 Aligned_cols=208 Identities=19% Similarity=0.288 Sum_probs=167.3
Q ss_pred cccEEEEcCCCCCCEEEEEecCCcEEEEecCC----------------CeEEEEEcCCCCCEEEEEEcCCC-CEEEEEec
Q 002564 139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST----------------KKKLYEFKGWGSSISSCVSSPAL-DVVAVGCS 201 (907)
Q Consensus 139 ~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~----------------~~~~~~~~~h~~~I~~l~~sp~~-~~la~g~~ 201 (907)
.+......+-+...+.++-+..|.|+|||+.. .++++++.+|...=..++|||-. ..|++|.-
T Consensus 153 ~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc 232 (440)
T KOG0302|consen 153 GINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDC 232 (440)
T ss_pred ccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCcc
Confidence 33344444444224566778899999999843 35788999999999999999932 35788877
Q ss_pred CCeEEEEEccCCceEE---EEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc-eeeeeeecccccCeEEEEEe
Q 002564 202 DGKIHVHNVRYDEELV---TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFF 277 (907)
Q Consensus 202 dg~I~iwd~~~~~~~~---~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~~ 277 (907)
-+.|++|...++.-.. .|.. |...|..++|||....++++|+.||+|+|||++.+ +.......+|.+.|+.+.|+
T Consensus 233 ~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWn 311 (440)
T KOG0302|consen 233 VKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWN 311 (440)
T ss_pred ccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEcc
Confidence 8899999998875332 2334 58899999999998889999999999999999988 22222224899999999999
Q ss_pred cCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceeccc
Q 002564 278 ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQ 348 (907)
Q Consensus 278 ~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~ 348 (907)
.+.++|++|+.||+++|||++.-... ..+..+.-|..+|+++.|+| +...|++++.|..|.+||+....-
T Consensus 312 r~~~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 312 RREPLLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred CCcceeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 99999999999999999999876544 56778889999999999999 667888999999999999875543
No 171
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.2e-19 Score=180.27 Aligned_cols=284 Identities=20% Similarity=0.276 Sum_probs=193.3
Q ss_pred EEEEcCCCCCCEEEEEecCC-----cEEEEecCCCeEEEE---EcCCCCCEEEEEEcC-------CCCEEEEEecCCeEE
Q 002564 142 TCIMHPDTYLNKVIVGSQEG-----SLQLWNISTKKKLYE---FKGWGSSISSCVSSP-------ALDVVAVGCSDGKIH 206 (907)
Q Consensus 142 ~~~~~p~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~---~~~h~~~I~~l~~sp-------~~~~la~g~~dg~I~ 206 (907)
-..+-|+. +.|+++-.+. .+++||-.. ..++. +-- ...-.|++|.. .|+++|+|+.|..|.
T Consensus 130 e~~V~psD--nlIl~ar~eddvs~LEvYVyn~~e-~nlYvHHD~il-pafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie 205 (463)
T KOG0270|consen 130 EEQVKPSD--NLILCARNEDDVSYLEVYVYNEEE-ENLYVHHDFIL-PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE 205 (463)
T ss_pred cceeccCC--cEEEEeeccCCceEEEEEEEcCCC-cceeEecceec-cCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence 34556766 6677764433 245555322 12211 110 23335555532 367999999999999
Q ss_pred EEEccCCce---EEEE-----------------eecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecc
Q 002564 207 VHNVRYDEE---LVTF-----------------THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA 266 (907)
Q Consensus 207 iwd~~~~~~---~~~~-----------------~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~ 266 (907)
|||+.--.. ...+ ..+|...|.+++|+..-+.+||+|+.|.+|++||+.++++..++. .
T Consensus 206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~ 284 (463)
T KOG0270|consen 206 IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-H 284 (463)
T ss_pred EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-h
Confidence 999862110 0000 124567788999999888899999999999999999999999998 8
Q ss_pred cccCeEEEEEecCC-CEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEce
Q 002564 267 HDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVI 344 (907)
Q Consensus 267 h~~~V~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~ 344 (907)
|...|.++.|+|.. ..|++|+.|++|.+.|.+......... ...+.|-.++|.| ....++++..||+++-+|++
T Consensus 285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w----k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R 360 (463)
T KOG0270|consen 285 HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW----KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR 360 (463)
T ss_pred cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE----EeccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence 99999999999965 489999999999999887533222222 1234555566655 23344444455555555543
Q ss_pred ecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCC
Q 002564 345 QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENP 424 (907)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~ 424 (907)
..
T Consensus 361 ~~------------------------------------------------------------------------------ 362 (463)
T KOG0270|consen 361 NP------------------------------------------------------------------------------ 362 (463)
T ss_pred CC------------------------------------------------------------------------------
Confidence 22
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-CEEEEEecCCeEEEEEC
Q 002564 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDF 503 (907)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~ 503 (907)
++++.+. .+|.++|.++++++.. .++++++.|+.+++|++
T Consensus 363 -------------------------------~~~vwt~--------~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~ 403 (463)
T KOG0270|consen 363 -------------------------------GKPVWTL--------KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKF 403 (463)
T ss_pred -------------------------------CCceeEE--------EeccCCcceEEecCCCCcceeeccccceEEEEee
Confidence 1333333 3899999999998865 57889999999999999
Q ss_pred CCCceeeeeecC---cceeEEEEeeCC-CEEEEEeCCCeEEEEEcccceeEE
Q 002564 504 KGRDLKSRWEVG---CSLVKIVYHRVN-GLLATVADDLVIRLFDVVALRMVR 551 (907)
Q Consensus 504 ~~~~~~~~~~~~---~~i~~~~~s~~~-~~la~~~~dg~I~v~d~~~~~~~~ 551 (907)
..........+. +...|+++.|+- ..+|+|+..+.++|||+.+...++
T Consensus 404 ~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 404 DVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 865543333322 456677777765 477888888899999998876554
No 172
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=1.1e-19 Score=168.15 Aligned_cols=308 Identities=16% Similarity=0.226 Sum_probs=214.2
Q ss_pred eEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEE
Q 002564 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251 (907)
Q Consensus 172 ~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~i 251 (907)
.+.+.+++|.+.|+++.|..+++ |.+|..-|.|++|++.+.+.+..+...+...|+.+.-.|++. +.+-+.|+.+.+
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~--l~tqgRd~~L~l 81 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS--LDTQGRDPLLIL 81 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc--hhhcCCCceEEE
Confidence 35677889999999999988765 889999999999999999999988866688999999999865 788889999999
Q ss_pred EECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEE
Q 002564 252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331 (907)
Q Consensus 252 wd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s 331 (907)
|++..+..+. -|.-.++++.|.+-. +...+. ...|-.............. ..+..+.+..-++..
T Consensus 82 w~ia~s~~i~----i~Si~~nslgFCrfS--l~~~~k---~~eqll~yp~rgsde~h~~--D~g~~tqv~i~dd~~---- 146 (323)
T KOG0322|consen 82 WTIAYSAFIS----IHSIVVNSLGFCRFS--LVKKPK---NSEQLLEYPSRGSDETHKQ--DGGDTTQVQIADDSE---- 146 (323)
T ss_pred EEccCcceEE----Eeeeeccccccccce--eccCCC---cchhheecCCcccchhhhh--ccCccceeEccCchh----
Confidence 9998755433 244556666665532 222211 1111111100000000000 000011111111000
Q ss_pred EeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeece
Q 002564 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411 (907)
Q Consensus 332 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~ 411 (907)
T Consensus 147 -------------------------------------------------------------------------------- 146 (323)
T KOG0322|consen 147 -------------------------------------------------------------------------------- 146 (323)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecceeeecCCCCCCceEEEEEc-CCC--CEEEEEeCCCcEEEEeCCCCccceeeeccccc--cccCcCCcEEEEEEcCCC
Q 002564 412 LGEHILRPCPENPTAVKACTIS-ACG--NFAVLGTAGGWIERFNLQSGISRGSYLDMSER--SNYAHNGEVVGVACDSTN 486 (907)
Q Consensus 412 ~~~~~~~~~~~~~~~v~~~~~s-~~g--~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~s~~~ 486 (907)
....+.+.+..+. .|+ -++++|+++|.+.+||+.++...-.+...... ....|..+|.++.+.+.-
T Consensus 147 ---------~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~ 217 (323)
T KOG0322|consen 147 ---------RSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC 217 (323)
T ss_pred ---------ccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh
Confidence 0011233333321 123 25678899999999999987544433321111 224799999999999877
Q ss_pred CEEEEEecCCeEEEEECCCC--ce--eeeeec-CcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCee
Q 002564 487 TLMISAGYHGDIKVWDFKGR--DL--KSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT 561 (907)
Q Consensus 487 ~~l~s~~~dg~i~iwd~~~~--~~--~~~~~~-~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~ 561 (907)
..=++++.+..+..|++... .+ ...+.. +..+..+.+-||++.+|+++.|+.||||..++..++..+.-|.+.|+
T Consensus 218 ~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn 297 (323)
T KOG0322|consen 218 DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVN 297 (323)
T ss_pred cCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhccee
Confidence 77788898889999988743 22 222222 36788999999999999999999999999999999999999999999
Q ss_pred eEEECCCCcEEEEEeCCCcEEEEEc
Q 002564 562 DFCFSEDGKWLLSSGMDGSLRIWDV 586 (907)
Q Consensus 562 ~l~fspdg~~l~s~s~Dg~I~vwd~ 586 (907)
+++|+||...+|++|+|+.|.+|++
T Consensus 298 ~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 298 AVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999986
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=3.2e-18 Score=163.13 Aligned_cols=280 Identities=16% Similarity=0.263 Sum_probs=206.3
Q ss_pred CCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCC-------eE-----EEEEc-CCCCCEEEEEEc-------CCCCEE
Q 002564 137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-------KK-----LYEFK-GWGSSISSCVSS-------PALDVV 196 (907)
Q Consensus 137 ~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~-------~~-----~~~~~-~h~~~I~~l~~s-------p~~~~l 196 (907)
..+...|-|+|++ ..|++-+.|..+.+|++... .. .-+++ .....|...+|- |+..++
T Consensus 49 ~nf~kgckWSPDG--SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~ 126 (406)
T KOG2919|consen 49 LNFLKGCKWSPDG--SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLF 126 (406)
T ss_pred hhhhccceeCCCC--ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcccee
Confidence 4566788999999 89999999999999998421 11 11111 114556666654 677899
Q ss_pred EEEecCCeEEEEEccCCceEEEEeec-CC---CCEEEEEEecCCCCEEEEEeCCCcEEEEEC-CCceeeee---ee---c
Q 002564 197 AVGCSDGKIHVHNVRYDEELVTFTHS-MR---GAVTALAFSSDGQPLLASGASSGVISIWNL-EKRRLQSV---IR---E 265 (907)
Q Consensus 197 a~g~~dg~I~iwd~~~~~~~~~~~~~-~~---~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~-~~~~~~~~---~~---~ 265 (907)
|+.+.+.-|++||.-+|+....+..- |. ....+++|+|||. .|++| ....|++||+ +.|+.... +. .
T Consensus 127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEeec-ccceEEEeeccCCCCCCcchhhhhcccc
Confidence 99999999999999999988777632 12 2457899999999 66655 4789999999 45532221 11 1
Q ss_pred ccccCeEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeC-CCCEEEEEc
Q 002564 266 AHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSV 343 (907)
Q Consensus 266 ~h~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~-dg~i~iwd~ 343 (907)
+..+-|.+++|+|-.. .++.++....+-++.-+.. +.+..+.+|.+.|+.++|.++|+.|++|+. |-.|..||+
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCC----CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEee
Confidence 3367889999999665 8999999999988865544 567777899999999999999999999875 678999998
Q ss_pred eecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCC
Q 002564 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423 (907)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~ 423 (907)
+.......--. + ..+.
T Consensus 281 R~~~~pv~~L~------------------------------------------------------r----------hv~~ 296 (406)
T KOG2919|consen 281 RYSRDPVYALE------------------------------------------------------R----------HVGD 296 (406)
T ss_pred hhccchhhhhh------------------------------------------------------h----------hccC
Confidence 75432211000 0 0011
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCC
Q 002564 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQS-GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG 496 (907)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 496 (907)
...-.-..+.|+|++|++|+.+|.|++||++. |.....+. .|...+++++++|--.++++++...
T Consensus 297 TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~--------~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 297 TNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG--------NYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred ccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc--------cccccccceecCcccceeeeccCce
Confidence 12233456788999999999999999999998 66555553 7899999999999988888887643
No 174
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=8.7e-20 Score=202.28 Aligned_cols=288 Identities=18% Similarity=0.303 Sum_probs=219.9
Q ss_pred EEEEEEecCCCCEEEEEe----------CCCcEEEEECCCc------eeeeeeecccccCeEEEEEecCCCE----EEEE
Q 002564 227 VTALAFSSDGQPLLASGA----------SSGVISIWNLEKR------RLQSVIREAHDNAIISLHFFANEPV----LMSA 286 (907)
Q Consensus 227 v~~l~fs~dg~~~l~sg~----------~dg~I~iwd~~~~------~~~~~~~~~h~~~V~~l~~~~~~~~----l~s~ 286 (907)
-..++|+|++..++++|. .+.++.||.+... +.+..+. -....+.++|.+.+.. |+.|
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~--s~~rF~kL~W~~~g~~~~GlIaGG 86 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ--SSNRFNKLAWGSYGSHSHGLIAGG 86 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc--ccccceeeeecccCCCccceeecc
Confidence 346789998876777663 2445566654322 2333333 4567889999987765 8888
Q ss_pred cCCCcEEEEEccC--CCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhh
Q 002564 287 SADNSIKMWIFDT--TDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 363 (907)
Q Consensus 287 ~~d~~i~vw~~~~--~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 363 (907)
..||.|.+|+... .+.....+.....|.++|..+.|++ .++.|++|+.||.|.+||+...+......
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---------- 156 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---------- 156 (1049)
T ss_pred ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC----------
Confidence 9999999999876 3555567788889999999999999 45599999999999999986532211100
Q ss_pred ccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe
Q 002564 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (907)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 443 (907)
T Consensus 157 -------------------------------------------------------------------------------- 156 (1049)
T KOG0307|consen 157 -------------------------------------------------------------------------------- 156 (1049)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-CEEEEEecCCeEEEEECCCCceeeeeecCc---cee
Q 002564 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRWEVGC---SLV 519 (907)
Q Consensus 444 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~i~ 519 (907)
.......|.+++|+..- ..|++++.+|.+.|||++..+.+-.+.... .+.
T Consensus 157 --------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S 210 (1049)
T KOG0307|consen 157 --------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS 210 (1049)
T ss_pred --------------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcccee
Confidence 01344567777777643 577888899999999999887776665553 478
Q ss_pred EEEEeeCCC-EEEEEeCCC---eEEEEEcccc-eeEEEeecCCCCeeeEEECCCC-cEEEEEeCCCcEEEEEcCCCceee
Q 002564 520 KIVYHRVNG-LLATVADDL---VIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIWDVILARQID 593 (907)
Q Consensus 520 ~~~~s~~~~-~la~~~~dg---~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg-~~l~s~s~Dg~I~vwd~~~~~~~~ 593 (907)
.+.|||++. .++++++|. .|.+||++.- ..++.+.+|...|.++.|++.+ ++|+|++.|+.|.+|+..+|+.+.
T Consensus 211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 999999864 555555543 7999998753 5688889999999999999966 899999999999999999999999
Q ss_pred EeeeCCc-eEEEEECCCCc-eEEEEEecCCeEEEeecccccc
Q 002564 594 AIHVDVS-ITALSLSPNMD-VLATAHVDQNGVYLWVNRCMFS 633 (907)
Q Consensus 594 ~~~~~~~-v~~l~~spdg~-~lat~~~d~~~i~lW~~~~~~~ 633 (907)
.+..... +..+.|+|... .++.++-||. |.|+.+...-.
T Consensus 291 ~~p~~~nW~fdv~w~pr~P~~~A~asfdgk-I~I~sl~~~~~ 331 (1049)
T KOG0307|consen 291 ELPAQGNWCFDVQWCPRNPSVMAAASFDGK-ISIYSLQGTDT 331 (1049)
T ss_pred ecCCCCcceeeeeecCCCcchhhhheeccc-eeeeeeecCCc
Confidence 9977544 99999999766 8888899995 99999866553
No 175
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.2e-18 Score=177.00 Aligned_cols=171 Identities=16% Similarity=0.207 Sum_probs=139.9
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecC-CCCEEEEEeCCCcEEE
Q 002564 173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-GQPLLASGASSGVISI 251 (907)
Q Consensus 173 ~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d-g~~~l~sg~~dg~I~i 251 (907)
....+.||.+.|+|++|+.+|.+|++|+.|-.+.|||.-..+.+..+..+|...|.++.|-|. +..++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 445688999999999999999999999999999999999999999999999999999999985 2348999999999999
Q ss_pred EECCCc----------eeeeeeecccccCeEEEEEecCC-CEEEEEcCCCcEEEEEccCCCCC------cceeEeccCCC
Q 002564 252 WNLEKR----------RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGD------PRLLRFRSGHS 314 (907)
Q Consensus 252 wd~~~~----------~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~------~~~~~~~~~h~ 314 (907)
+|+... .....+. .|...|..++-.|++ ..+.+++.||+++.+|+..+..- +..+......-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999852 2333344 799999999999999 58889999999999999764211 11122222333
Q ss_pred CCCeEEEEec-CCCEEEEEeCCCCEEEEEce
Q 002564 315 APPLCIRFYA-NGRHILSAGQDRAFRLFSVI 344 (907)
Q Consensus 315 ~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~ 344 (907)
-...++..+| +..+|+.|+.|-..++||.+
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 4567889999 67789999999999999964
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=2.1e-18 Score=169.66 Aligned_cols=292 Identities=17% Similarity=0.179 Sum_probs=212.0
Q ss_pred ccCeEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCC-----cceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEE
Q 002564 268 DNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGD-----PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 341 (907)
Q Consensus 268 ~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~-----~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iw 341 (907)
..+|.++.|.++.. .++||+.|..|++|.+...... ...+..+..|...|++++|+|+|..|++|+.+|.+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45899999998876 9999999999999988765332 34556778999999999999999999999999999999
Q ss_pred EceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCC
Q 002564 342 SVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCP 421 (907)
Q Consensus 342 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~ 421 (907)
-....... .... ..+ ..-.. ..+.....
T Consensus 93 k~~~~~~~---~~d~-e~~---------------------------------------~~ke~---------w~v~k~lr 120 (434)
T KOG1009|consen 93 KQGDVRIF---DADT-EAD---------------------------------------LNKEK---------WVVKKVLR 120 (434)
T ss_pred EecCcCCc---cccc-hhh---------------------------------------hCccc---------eEEEEEec
Confidence 75431100 0000 000 00000 11122233
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEE
Q 002564 422 ENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501 (907)
Q Consensus 422 ~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 501 (907)
+|...+..++|+|+++++++|+-|..+++||+..|.....+. .|...+..++|+|.++++++-+.|...+.+
T Consensus 121 ~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~--------dh~~yvqgvawDpl~qyv~s~s~dr~~~~~ 192 (434)
T KOG1009|consen 121 GHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD--------DHEHYVQGVAWDPLNQYVASKSSDRHPEGF 192 (434)
T ss_pred ccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc--------ccccccceeecchhhhhhhhhccCccccee
Confidence 567899999999999999999999999999999999998885 899999999999999999999999877777
Q ss_pred ECCCCceeeeeec------------------------CcceeEEEEeeCCCEEEEEeC----CC-----eEEEEEccc-c
Q 002564 502 DFKGRDLKSRWEV------------------------GCSLVKIVYHRVNGLLATVAD----DL-----VIRLFDVVA-L 547 (907)
Q Consensus 502 d~~~~~~~~~~~~------------------------~~~i~~~~~s~~~~~la~~~~----dg-----~I~v~d~~~-~ 547 (907)
.+...+.+..... ..-...++|+|+|.++++... .+ ..++|+-.. .
T Consensus 193 ~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~ 272 (434)
T KOG1009|consen 193 SAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK 272 (434)
T ss_pred eeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccccc
Confidence 7654433322220 122446789999999987642 12 234444322 2
Q ss_pred eeEEEeecCCCCeeeEEECC------------------CCcEEEEEeCCCcEEEEEcCCCceeeEee--eCCceEEEEEC
Q 002564 548 RMVRKFEGHTDRITDFCFSE------------------DGKWLLSSGMDGSLRIWDVILARQIDAIH--VDVSITALSLS 607 (907)
Q Consensus 548 ~~~~~~~~h~~~I~~l~fsp------------------dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~--~~~~v~~l~~s 607 (907)
++...+.+...+...+.|+| -+-.++.++.+ .|.|||.++-.++.... +-.+++.++|+
T Consensus 273 rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws 351 (434)
T KOG1009|consen 273 RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWS 351 (434)
T ss_pred CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEeccccccceEEEeeeeeeeecceeec
Confidence 34555666666666666665 12234455554 59999999888776664 34569999999
Q ss_pred CCCceEEEEEecC
Q 002564 608 PNMDVLATAHVDQ 620 (907)
Q Consensus 608 pdg~~lat~~~d~ 620 (907)
+||.+|+..+.||
T Consensus 352 ~dg~~l~vSS~DG 364 (434)
T KOG1009|consen 352 DDGSVLLVSSTDG 364 (434)
T ss_pred CCCcEEEEeccCC
Confidence 9999999999999
No 177
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3.4e-18 Score=166.44 Aligned_cols=302 Identities=15% Similarity=0.184 Sum_probs=213.1
Q ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEcc------CCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCc
Q 002564 175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVR------YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV 248 (907)
Q Consensus 175 ~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~------~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~ 248 (907)
+.+.+|.+.|+++.||.++++|++|+.|..+++|++. +.+++.....+|...|.|++|...++ .+.+|+.+++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~~ 128 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGERWGT 128 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-eEecCCCcce
Confidence 3467899999999999999999999999999999985 45677777788889999999998877 8999999999
Q ss_pred EEEEECCCceeeeeeecccc---cCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-
Q 002564 249 ISIWNLEKRRLQSVIREAHD---NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA- 324 (907)
Q Consensus 249 I~iwd~~~~~~~~~~~~~h~---~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~- 324 (907)
|...|+++.+.+..+. |. +.|+.+..+|-.+.|++.+.++.|.+||.........+ ............+.|+|
T Consensus 129 VI~HDiEt~qsi~V~~--~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~-~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVAN--ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL-VLPANSGKNFYTAEFHPE 205 (609)
T ss_pred eEeeecccceeeeeec--ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce-eeecCCCccceeeeecCC
Confidence 9999999999888875 54 48999999999999999999999999998765432222 22334456678899999
Q ss_pred CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEE
Q 002564 325 NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYV 404 (907)
Q Consensus 325 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 404 (907)
...+|++.+..+-+-+||.+..+.......
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~-------------------------------------------------- 235 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRS-------------------------------------------------- 235 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhh--------------------------------------------------
Confidence 567788888888999999875432111000
Q ss_pred EEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEc-
Q 002564 405 WRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD- 483 (907)
Q Consensus 405 w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s- 483 (907)
.....+.....-..+.|+|+|+.+.+--....-..|| -|.....-+.++
T Consensus 236 -----------~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D-------------------~~S~R~~V~k~D~ 285 (609)
T KOG4227|consen 236 -----------MFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFD-------------------FISQRCFVLKSDH 285 (609)
T ss_pred -----------ccccCcccchhhhheeeCCCCCeehhhhccCCCEEee-------------------eecccceeEeccC
Confidence 0000000011224456666666554321111111111 122222222222
Q ss_pred -CCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccc---------------
Q 002564 484 -STNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL--------------- 547 (907)
Q Consensus 484 -~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~--------------- 547 (907)
|+| ++- ...+.+++|..|. .+++|+++-.|++|.+...
T Consensus 286 N~~G-Y~N------------------------~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~ 339 (609)
T KOG4227|consen 286 NPNG-YCN------------------------IKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEE 339 (609)
T ss_pred CCCc-cee------------------------eeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhh
Confidence 111 110 1345567776544 4999999999999987431
Q ss_pred --------eeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEc
Q 002564 548 --------RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586 (907)
Q Consensus 548 --------~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~ 586 (907)
+.+..++||..-++.+.|+|...+|++.+-...+++|.-
T Consensus 340 ~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 340 MPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred CchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 224568899999999999999999999999999999963
No 178
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=5.2e-18 Score=163.31 Aligned_cols=276 Identities=17% Similarity=0.266 Sum_probs=194.0
Q ss_pred CEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecC-CCCEEEEEeCCCcEEEEECCCceeeeeeec-ccc-cC
Q 002564 194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD-GQPLLASGASSGVISIWNLEKRRLQSVIRE-AHD-NA 270 (907)
Q Consensus 194 ~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d-g~~~l~sg~~dg~I~iwd~~~~~~~~~~~~-~h~-~~ 270 (907)
..+|++..+|.|++||..+++.+..|..+ ...+..+.|..+ +.+.+.+|+.||+|++||++.......+.. +|. .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~-~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGP-PATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCC-CCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 57899999999999999999999999887 778889999874 556899999999999999998866655552 343 46
Q ss_pred eEEEEEecCCCEEEEEcC----CCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEcee
Q 002564 271 IISLHFFANEPVLMSASA----DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQ 345 (907)
Q Consensus 271 V~~l~~~~~~~~l~s~~~----d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~ 345 (907)
..+++..-+++.+++|.. |-.|.+||++..... +-.....|...|++++|+| +.+.|++|+.||.+.+||+..
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~--l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL--LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccch--hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 667776667777777753 678999999876532 2334468999999999999 778999999999999999865
Q ss_pred cccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCC
Q 002564 346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 425 (907)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~ 425 (907)
+.....+.
T Consensus 198 d~EeDaL~------------------------------------------------------------------------ 205 (376)
T KOG1188|consen 198 DNEEDALL------------------------------------------------------------------------ 205 (376)
T ss_pred CcchhhHH------------------------------------------------------------------------
Confidence 42111100
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-CEEEEEecCCeEEEEECC
Q 002564 426 AVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFK 504 (907)
Q Consensus 426 ~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~ 504 (907)
.. ..|...|..+.|..++ +.+.+-+..++..+|+++
T Consensus 206 ----------------------------------~v---------iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 206 ----------------------------------HV---------INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred ----------------------------------Hh---------hcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 00 1345556666666655 346666666777777777
Q ss_pred CCceeeeeecC-------------cceeEEEEeeCCCEEEEEeC-CCeEEEEEcc---c---ceeEEEeec-CCCCeeeE
Q 002564 505 GRDLKSRWEVG-------------CSLVKIVYHRVNGLLATVAD-DLVIRLFDVV---A---LRMVRKFEG-HTDRITDF 563 (907)
Q Consensus 505 ~~~~~~~~~~~-------------~~i~~~~~s~~~~~la~~~~-dg~I~v~d~~---~---~~~~~~~~~-h~~~I~~l 563 (907)
.+.....+..+ ..+.......+....++++. -+...++-+. + .+.+..+.| |..-|.++
T Consensus 243 ~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i 322 (376)
T KOG1188|consen 243 DGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDI 322 (376)
T ss_pred CCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHH
Confidence 66544333221 11111112224445555544 4555554332 2 344566776 66778999
Q ss_pred EECCCCcEEEEEeCCCcEEEEEcC
Q 002564 564 CFSEDGKWLLSSGMDGSLRIWDVI 587 (907)
Q Consensus 564 ~fspdg~~l~s~s~Dg~I~vwd~~ 587 (907)
.|...+.++.||++||.+.+|..+
T Consensus 323 ~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 323 LFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred hhhcccceeeccCCCceEEEEecC
Confidence 999888999999999999999973
No 179
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.80 E-value=2.5e-17 Score=154.85 Aligned_cols=289 Identities=17% Similarity=0.292 Sum_probs=209.2
Q ss_pred CceEEEEeecCCCCEEEEEEe--cCCCCEEEEEe----CCCcEEEEEC--CCceeeeeeecccccCeEEEEEecCCC---
Q 002564 213 DEELVTFTHSMRGAVTALAFS--SDGQPLLASGA----SSGVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEP--- 281 (907)
Q Consensus 213 ~~~~~~~~~~~~~~v~~l~fs--~dg~~~l~sg~----~dg~I~iwd~--~~~~~~~~~~~~h~~~V~~l~~~~~~~--- 281 (907)
.+.+.++..+ -++.++.|+ ++.+..||.|+ ..+.|.|-.+ ++++.+..-...|..+++.+.|.|+..
T Consensus 35 ~~eiy~Y~ap--~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~ 112 (364)
T KOG0290|consen 35 RKEIYTYNAP--WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVY 112 (364)
T ss_pred cceEEEecCC--CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccC
Confidence 4556666654 678999998 55666889887 3456666544 455555554446999999999999863
Q ss_pred --EEEEEcCCCcEEEEEccCCCCCcceeEe-----ccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeec
Q 002564 282 --VLMSASADNSIKMWIFDTTDGDPRLLRF-----RSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELS 353 (907)
Q Consensus 282 --~l~s~~~d~~i~vw~~~~~~~~~~~~~~-----~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~ 353 (907)
+|++++ ..+|+|.+...+....+... -..+..++++..|+. +.+++.+++-|-+..+||++++..
T Consensus 113 pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~----- 185 (364)
T KOG0290|consen 113 PDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS----- 185 (364)
T ss_pred cchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-----
Confidence 555554 47999988754433222222 234567888888887 777888888888888888764310
Q ss_pred hhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEc
Q 002564 354 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS 433 (907)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s 433 (907)
T Consensus 186 -------------------------------------------------------------------------------- 185 (364)
T KOG0290|consen 186 -------------------------------------------------------------------------------- 185 (364)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-CEEEEEecCCeEEEEECCCCceeeee
Q 002564 434 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRDLKSRW 512 (907)
Q Consensus 434 ~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~ 512 (907)
+.....+ .+|...|..++|...+ +.+++.|.||.+|++|++..+.-..+
T Consensus 186 ----------------------~~vkTQL--------IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII 235 (364)
T KOG0290|consen 186 ----------------------GTVKTQL--------IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII 235 (364)
T ss_pred ----------------------cceeeEE--------EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE
Confidence 0011111 3899999999999865 68899999999999999876544333
Q ss_pred e---c-CcceeEEEEeeCC-CEEEEEeC-CCeEEEEEcccc-eeEEEeecCCCCeeeEEECCCC-cEEEEEeCCCcEEEE
Q 002564 513 E---V-GCSLVKIVYHRVN-GLLATVAD-DLVIRLFDVVAL-RMVRKFEGHTDRITDFCFSEDG-KWLLSSGMDGSLRIW 584 (907)
Q Consensus 513 ~---~-~~~i~~~~~s~~~-~~la~~~~-dg~I~v~d~~~~-~~~~~~~~h~~~I~~l~fspdg-~~l~s~s~Dg~I~vw 584 (907)
- . ..+...++|+++. +++|+-.. ...|.|.|++.. ..+.++++|.+.|+.++|.|.. ..|+|++.|..+.+|
T Consensus 236 YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliW 315 (364)
T KOG0290|consen 236 YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIW 315 (364)
T ss_pred ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEE
Confidence 2 1 3678889998844 56776544 468999999754 6789999999999999999965 689999999999999
Q ss_pred EcCCCc------eeeEeeeCCceEEEEECC-CCceEEEEEecC
Q 002564 585 DVILAR------QIDAIHVDVSITALSLSP-NMDVLATAHVDQ 620 (907)
Q Consensus 585 d~~~~~------~~~~~~~~~~v~~l~~sp-dg~~lat~~~d~ 620 (907)
|+.+-- ++-.+.....|..+.|++ .+++++.+....
T Consensus 316 Dl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kk 358 (364)
T KOG0290|consen 316 DLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKK 358 (364)
T ss_pred ecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCe
Confidence 997532 334445566799999996 678888887654
No 180
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.79 E-value=9.1e-20 Score=181.85 Aligned_cols=298 Identities=16% Similarity=0.235 Sum_probs=237.0
Q ss_pred CCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceE
Q 002564 314 SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV 393 (907)
Q Consensus 314 ~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 393 (907)
.-.+..+.|+.+|++++.|+..|.+..+|..+.....++..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v--------------------------------------- 169 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV--------------------------------------- 169 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh---------------------------------------
Confidence 34678899999999999999999999999998877776543
Q ss_pred EEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCc
Q 002564 394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAH 473 (907)
Q Consensus 394 ~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h 473 (907)
...|..+.|-.+.++++++ ....+++||-.. ..+..+ ..
T Consensus 170 ------------------------------~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~G-tElHCl---------k~ 208 (545)
T KOG1272|consen 170 ------------------------------METVRDVTFLHNEQFFAVA-QKKYVYVYDNNG-TELHCL---------KR 208 (545)
T ss_pred ------------------------------hhhhhhhhhhcchHHHHhh-hhceEEEecCCC-cEEeeh---------hh
Confidence 1556677777777888776 566789998653 333333 23
Q ss_pred CCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEE
Q 002564 474 NGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRK 552 (907)
Q Consensus 474 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~ 552 (907)
...|..+.|-|..-+|++++..|.++.-|+.+|+++..+... +.+..++-.|-+..+-+|..+|+|.+|.....+++..
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK 288 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK 288 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH
Confidence 357889999999989999999999999999999999988766 7888899999999999999999999999999999999
Q ss_pred eecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeec----
Q 002564 553 FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN---- 628 (907)
Q Consensus 553 ~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~---- 628 (907)
+-.|.++|.+|++.++|+|+||++.|..++|||++.-..+..++.+.+...+++|..| +||.+-.+ .|.+|.-
T Consensus 289 iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~--~v~iw~d~~~~ 365 (545)
T KOG1272|consen 289 ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGD--HVQIWKDALKG 365 (545)
T ss_pred HHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeecCC--eeeeehhhhcC
Confidence 9999999999999999999999999999999999998888888877789999999776 34444333 3999963
Q ss_pred ------------------ccccccCCCCccCCCCCcceeecCCCccCCCCccCCCCCCCCCccCCCCCCCCCCCCCcccc
Q 002564 629 ------------------RCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDENSSQPDVHRTDRVPKDSFGLPTFKQQ 690 (907)
Q Consensus 629 ------------------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (907)
...|+|...+..+.....+..+-+|+.++...+..++..-. ......|.+.-...+.|
T Consensus 366 s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~nPfe----trKQRqE~EVr~LLeKi 441 (545)
T KOG1272|consen 366 SGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDNPFE----TRKQRQEKEVRSLLEKI 441 (545)
T ss_pred CCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccCcch----hhhHHhHHHHHHHHhhC
Confidence 33566665555667777788889999888777665554321 11222222444566788
Q ss_pred ccCceeec
Q 002564 691 IPDLVTLS 698 (907)
Q Consensus 691 ~~~l~tls 698 (907)
.++||+|-
T Consensus 442 ppElIsLd 449 (545)
T KOG1272|consen 442 PPELISLD 449 (545)
T ss_pred ChHhEEec
Confidence 99999987
No 181
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.79 E-value=2.2e-16 Score=167.69 Aligned_cols=334 Identities=16% Similarity=0.176 Sum_probs=209.0
Q ss_pred CEE-EEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEE
Q 002564 152 NKV-IVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL 230 (907)
Q Consensus 152 ~~l-~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l 230 (907)
+.+ ++-..+|.|.+.|..+.+.+..+......-..+.++|||+++++++.||.|.++|+.+++.+.++..+ ....++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceE
Confidence 344 44556899999999999999999875554456789999999999999999999999999999999876 568999
Q ss_pred EEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecc------cccCeEEEEEecCCCEEEEEcCC-CcEEEEEccCCCCC
Q 002564 231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA------HDNAIISLHFFANEPVLMSASAD-NSIKMWIFDTTDGD 303 (907)
Q Consensus 231 ~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~------h~~~V~~l~~~~~~~~l~s~~~d-~~i~vw~~~~~~~~ 303 (907)
++++||+++++++...+.+.++|.++.+.+..+..+ ....+.++..+|..+.++..-.| +.|.+-|+... .
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~--~ 161 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP--K 161 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS--S
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc--c
Confidence 999999955555567899999999999999888732 23467888889998866655544 55544444332 2
Q ss_pred cceeEeccCCCCCCeEEEEecCCCEEEEE-eCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeec
Q 002564 304 PRLLRFRSGHSAPPLCIRFYANGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382 (907)
Q Consensus 304 ~~~~~~~~~h~~~v~~i~~~~~g~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (907)
....... ..........|+|++++++.+ ..+..+.++|..+.+....+..+.
T Consensus 162 ~~~~~~i-~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~-------------------------- 214 (369)
T PF02239_consen 162 NLKVTTI-KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGK-------------------------- 214 (369)
T ss_dssp CEEEEEE-E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SS--------------------------
T ss_pred ccceeee-cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccc--------------------------
Confidence 2222222 334556778888888887664 345566666654432221110000
Q ss_pred ccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceee
Q 002564 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (907)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~ 462 (907)
. .++.+... +
T Consensus 215 ---------------------------~-----------p~~~~~~~--------------------------------~ 224 (369)
T PF02239_consen 215 ---------------------------K-----------PHPGPGAN--------------------------------F 224 (369)
T ss_dssp ---------------------------S-----------BEETTEEE--------------------------------E
T ss_pred ---------------------------c-----------cccccccc--------------------------------c
Confidence 0 00000000 0
Q ss_pred eccccccccCcCC--cEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEE----eCC
Q 002564 463 LDMSERSNYAHNG--EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV----ADD 536 (907)
Q Consensus 463 ~~~~~~~~~~h~~--~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~----~~d 536 (907)
.|.. ++.... ..+...++.-....+.+||..+.+.++++...+.-.-+..||+++++.+. ...
T Consensus 225 ---------php~~g~vw~~~--~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~ 293 (369)
T PF02239_consen 225 ---------PHPGFGPVWATS--GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDA 293 (369)
T ss_dssp ---------EETTTEEEEEEE--BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSH
T ss_pred ---------cCCCcceEEeec--cccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCC
Confidence 1221 222221 22333333333456678999999999999887666888999999999998 455
Q ss_pred CeEEEEEcccceeEEEeecC-CCCeeeEEECCCCcEEEEEeC--CCcEEEEEcCCCceeeEeee
Q 002564 537 LVIRLFDVVALRMVRKFEGH-TDRITDFCFSEDGKWLLSSGM--DGSLRIWDVILARQIDAIHV 597 (907)
Q Consensus 537 g~I~v~d~~~~~~~~~~~~h-~~~I~~l~fspdg~~l~s~s~--Dg~I~vwd~~~~~~~~~~~~ 597 (907)
+.|.++|.++.+.+.++... ...+..+.|++||+++..+.. ++.|.+||..|.+.+..+..
T Consensus 294 ~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~ 357 (369)
T PF02239_consen 294 DTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPV 357 (369)
T ss_dssp T-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE-
T ss_pred ceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEEe
Confidence 89999999999888887633 235889999999997665543 34799999999999998873
No 182
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.4e-16 Score=145.90 Aligned_cols=269 Identities=17% Similarity=0.273 Sum_probs=194.4
Q ss_pred cceEEEEEecCeEEEEEcCe---EEEEeC-----------Ce-eEEEEcccccceEEEEeeCCEEEEEecCCcEEEEecC
Q 002564 57 KKIRALASYRDYTFAAYGNH---IAVVKR-----------AH-QVATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFK 121 (907)
Q Consensus 57 ~~I~~la~~~~~~~~a~g~~---I~vw~~-----------~~-~~~~~~~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~ 121 (907)
..|-+-|++|-++|++.|+. |.+... ++ .+...++|.++|..+++..++|++++ ||.|+=|...
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeecc-CceEEEeeeh
Confidence 34556678899999988765 777752 22 24447999999999999999999998 7999999987
Q ss_pred CCCcc---------ccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCC
Q 002564 122 GIEEN---------LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPA 192 (907)
Q Consensus 122 ~~~~~---------~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~ 192 (907)
..+.. ..|.+.-...-..+..+.+.|.. +-++.++.|+.++-||+++|+...++++|+..|.+++--..
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCC--CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 65431 11111111122334566678887 77888889999999999999999999999999999998665
Q ss_pred CCEEEEEecCCeEEEEEccCCceEEEEeec---------CCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeee
Q 002564 193 LDVVAVGCSDGKIHVHNVRYDEELVTFTHS---------MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI 263 (907)
Q Consensus 193 ~~~la~g~~dg~I~iwd~~~~~~~~~~~~~---------~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~ 263 (907)
...+++|++||++++||.++++.+..+... -...|-+++-+.| .|++|+ ...+.+|+++..++...+
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGg-Gp~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGG-GPKLSLWHLRSSESTCVF 243 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecC-CCceeEEeccCCCceEEE
Confidence 667999999999999999999988877532 1235677766544 677665 568999999999998888
Q ss_pred ecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEE-EEeCCCCEEEE
Q 002564 264 REAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLF 341 (907)
Q Consensus 264 ~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~-s~~~dg~i~iw 341 (907)
. -...+..+.|..+ .+++++..+.|.-|.+.. .+...........++..+....-.++ .++....+.++
T Consensus 244 p--ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G-----vl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 244 P--IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNG-----VLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred e--cccceeEeeeecc--eEEEeccccceeeeeecc-----EEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 6 6778899999755 688888888999996643 22222233333444555544333333 34555555554
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=3e-16 Score=168.13 Aligned_cols=273 Identities=11% Similarity=0.131 Sum_probs=184.7
Q ss_pred EEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEe-CCCCEEEEEceecccceeechhhhhHHH
Q 002564 283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRA 361 (907)
Q Consensus 283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 361 (907)
.++...++.|.+|+++.. +....+.... +.+.+..++++|++++|++++ .++.|.+|++..........
T Consensus 5 y~~~~~~~~I~~~~~~~~-g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~-------- 74 (330)
T PRK11028 5 YIASPESQQIHVWNLNHE-GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAA-------- 74 (330)
T ss_pred EEEcCCCCCEEEEEECCC-CceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEee--------
Confidence 344467899999999643 3334455443 346678899999999987764 57888888875211111000
Q ss_pred hhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEE
Q 002564 362 RKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL 441 (907)
Q Consensus 362 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 441 (907)
.. ........++++|+|+++++
T Consensus 75 ------------------------------------------------------~~----~~~~~p~~i~~~~~g~~l~v 96 (330)
T PRK11028 75 ------------------------------------------------------ES----PLPGSPTHISTDHQGRFLFS 96 (330)
T ss_pred ------------------------------------------------------ee----cCCCCceEEEECCCCCEEEE
Confidence 00 01134568999999998888
Q ss_pred Ee-CCCcEEEEeCCC-CccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe-cCCeEEEEECCCCceee-------e
Q 002564 442 GT-AGGWIERFNLQS-GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKS-------R 511 (907)
Q Consensus 442 g~-~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~-------~ 511 (907)
++ .++.|.+|++.. +........ ..+.....+++++|+++++++++ .++.|.+||+.+...+. .
T Consensus 97 ~~~~~~~v~v~~~~~~g~~~~~~~~------~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~ 170 (330)
T PRK11028 97 ASYNANCVSVSPLDKDGIPVAPIQI------IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT 170 (330)
T ss_pred EEcCCCeEEEEEECCCCCCCCceee------ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee
Confidence 76 478999999964 322111110 12234467788999999886555 66999999997632221 1
Q ss_pred eecCcceeEEEEeeCCCEEEEEeC-CCeEEEEEccc--c--eeEEEeecCC------CCeeeEEECCCCcEEEEEe-CCC
Q 002564 512 WEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVA--L--RMVRKFEGHT------DRITDFCFSEDGKWLLSSG-MDG 579 (907)
Q Consensus 512 ~~~~~~i~~~~~s~~~~~la~~~~-dg~I~v~d~~~--~--~~~~~~~~h~------~~I~~l~fspdg~~l~s~s-~Dg 579 (907)
.........++|+|+++++++++. ++.|.+||+.. + +.+..+..+. .....+.|+|||++|+++. .++
T Consensus 171 ~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~ 250 (330)
T PRK11028 171 TVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTAS 250 (330)
T ss_pred cCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCC
Confidence 223456678999999999988876 89999999973 3 3344443221 1233688999999999885 478
Q ss_pred cEEEEEcCCCc----eeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564 580 SLRIWDVILAR----QIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (907)
Q Consensus 580 ~I~vwd~~~~~----~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (907)
+|.+|++.... .+..+........+.|+|||++|++++...++|.+|++.
T Consensus 251 ~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 251 LISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 99999996532 233333333467899999999999998755579999864
No 184
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.6e-18 Score=177.58 Aligned_cols=271 Identities=21% Similarity=0.340 Sum_probs=200.8
Q ss_pred eeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccC----CCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCC
Q 002564 262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT----TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337 (907)
Q Consensus 262 ~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~----~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~ 337 (907)
++. .|...|+.+.|.|..+.|++++.||.+++|++.. .......+.++.+|.++|.|+++.+++.++++|+-||+
T Consensus 289 tl~-s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLR-SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eee-cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 444 7889999999999999999999999999999832 22334567788999999999999999999999999999
Q ss_pred EEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceee
Q 002564 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 417 (907)
Q Consensus 338 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~ 417 (907)
|+.|++.......... .. ....
T Consensus 368 I~~w~~p~n~dp~ds~-------------------------------------------------------dp---~vl~ 389 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSY-------------------------------------------------------DP---SVLS 389 (577)
T ss_pred eeeeccCCCCCccccc-------------------------------------------------------Cc---chhc
Confidence 9999875221111000 00 0111
Q ss_pred ecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-CEEEEEecCC
Q 002564 418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHG 496 (907)
Q Consensus 418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg 496 (907)
....+|...+..+++|+....|+.++.||+++.|+...... ..|.. ....+...++.+-... ...++...-+
T Consensus 390 ~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~------~~e~g~Plsvd~~ss~~a~~~~s~~~~ 462 (577)
T KOG0642|consen 390 GTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGE------PKEHGYPLSVDRTSSRPAHSLASFRFG 462 (577)
T ss_pred cceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCC------ccccCCcceEeeccchhHhhhhhcccc
Confidence 22236778999999999999999999999999999987766 33321 1122333445544332 1222222223
Q ss_pred eEEEEECCCCceeeeeecC--------cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCC
Q 002564 497 DIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED 568 (907)
Q Consensus 497 ~i~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspd 568 (907)
.--+.++........+... ..+..+..+|.+.+.+++..|+.|+++|..+++++.....|...++++++.|+
T Consensus 463 ~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~n 542 (577)
T KOG0642|consen 463 YTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPN 542 (577)
T ss_pred cccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCC
Confidence 3333344444333333221 56788899999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeCCCcEEEEEcCCCceeeEeeeC
Q 002564 569 GKWLLSSGMDGSLRIWDVILARQIDAIHVD 598 (907)
Q Consensus 569 g~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~ 598 (907)
|.+|++++.||.+++|.+....++.....+
T Consensus 543 g~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 543 GPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred CceEEeecCCceeehhhccchheeeccccc
Confidence 999999999999999999877776655443
No 185
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=5.3e-19 Score=196.17 Aligned_cols=275 Identities=19% Similarity=0.271 Sum_probs=208.4
Q ss_pred ecCCcEEEEecCC--CCccccceeeEecCCCcccEEEEcCCCCC--CEEEEEecCCcEEEEecCCC------eEEEEEcC
Q 002564 110 DIDGNMFIWAFKG--IEENLAPVGHVKLDDKFTPTCIMHPDTYL--NKVIVGSQEGSLQLWNISTK------KKLYEFKG 179 (907)
Q Consensus 110 ~~dg~v~vWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~l~~~s~dg~i~iwd~~~~------~~~~~~~~ 179 (907)
+.+.++-+|.++- .+....++..+.....+ ...+|.+.+.. ..|+.|..||.|.+||...- ..+.+...
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~s~~rF-~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~ 114 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQSSNRF-NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK 114 (1049)
T ss_pred ccccccceeeecccCccccccccccccccccc-eeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc
Confidence 3455566665433 33222334444444444 34455554421 25888999999999998652 34667789
Q ss_pred CCCCEEEEEEcCCCC-EEEEEecCCeEEEEEccCCceEEEE-eecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc
Q 002564 180 WGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR 257 (907)
Q Consensus 180 h~~~I~~l~~sp~~~-~la~g~~dg~I~iwd~~~~~~~~~~-~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~ 257 (907)
|.+.|..+.|++... +||+|+.||.|.|||+..-+.-... .....+.|.+++|+..-.++|++++.+|.+.|||++..
T Consensus 115 h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 115 HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred cCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence 999999999999765 9999999999999999976655555 23235789999999888789999999999999999999
Q ss_pred eeeeeeecccc--cCeEEEEEecCCC-EEEEEcCC---CcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEE
Q 002564 258 RLQSVIREAHD--NAIISLHFFANEP-VLMSASAD---NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHIL 330 (907)
Q Consensus 258 ~~~~~~~~~h~--~~V~~l~~~~~~~-~l~s~~~d---~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~ 330 (907)
+.+-.+. .|. ..+..++|+|+.. .+++++.| -.|.+||++..+. .++.+.+|...|.++.|++ |.++++
T Consensus 195 ~pii~ls-~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass---P~k~~~~H~~GilslsWc~~D~~lll 270 (1049)
T KOG0307|consen 195 KPIIKLS-DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS---PLKILEGHQRGILSLSWCPQDPRLLL 270 (1049)
T ss_pred Ccccccc-cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC---chhhhcccccceeeeccCCCCchhhh
Confidence 8777776 343 3478999999874 56666654 3689999887653 4556689999999999999 558999
Q ss_pred EEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeec
Q 002564 331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF 410 (907)
Q Consensus 331 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~ 410 (907)
+++.|+.+.+|+..+++...++..
T Consensus 271 SsgkD~~ii~wN~~tgEvl~~~p~-------------------------------------------------------- 294 (1049)
T KOG0307|consen 271 SSGKDNRIICWNPNTGEVLGELPA-------------------------------------------------------- 294 (1049)
T ss_pred cccCCCCeeEecCCCceEeeecCC--------------------------------------------------------
Confidence 999999999999988776666532
Q ss_pred eecceeeecCCCCCCceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCc
Q 002564 411 VLGEHILRPCPENPTAVKACTISACGN-FAVLGTAGGWIERFNLQSGI 457 (907)
Q Consensus 411 ~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~i~d~~~~~ 457 (907)
....+..+.|.|..- .+++++-+|.|.||.+.++.
T Consensus 295 ------------~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 295 ------------QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ------------CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 126677888888764 78899999999999998765
No 186
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=6.8e-16 Score=165.45 Aligned_cols=281 Identities=11% Similarity=0.098 Sum_probs=183.0
Q ss_pred EEecCCeEEEEEccC-Cc--eEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECC-CceeeeeeecccccCeEE
Q 002564 198 VGCSDGKIHVHNVRY-DE--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE-KRRLQSVIREAHDNAIIS 273 (907)
Q Consensus 198 ~g~~dg~I~iwd~~~-~~--~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~-~~~~~~~~~~~h~~~V~~ 273 (907)
+...++.|.+|++.+ ++ .+..+.. .+....++++|+++.+++++..++.|.+|++. +++....-.....+....
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~--~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVDV--PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEec--CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 336689999999974 33 3344432 35678899999999333444568999999997 343321111123345789
Q ss_pred EEEecCCCEEEEEcC-CCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEe-CCCCEEEEEceeccccee
Q 002564 274 LHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRE 351 (907)
Q Consensus 274 l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~-~dg~i~iwd~~~~~~~~~ 351 (907)
++|+|+++++++++. ++.|.+|+++............ .+...+.+++++|+++++++++ .++.|.+||+.+......
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 999999998888764 8899999987432221222222 2334577889999999886554 568999999865322110
Q ss_pred echhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEE
Q 002564 352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT 431 (907)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~ 431 (907)
... ...... .......++
T Consensus 164 ~~~------------------------------------------------------------~~~~~~--~g~~p~~~~ 181 (330)
T PRK11028 164 QEP------------------------------------------------------------AEVTTV--EGAGPRHMV 181 (330)
T ss_pred cCC------------------------------------------------------------CceecC--CCCCCceEE
Confidence 000 000000 013456789
Q ss_pred EcCCCCEEEEEeC-CCcEEEEeCCC--Ccc--ceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe-cCCeEEEEECCC
Q 002564 432 ISACGNFAVLGTA-GGWIERFNLQS--GIS--RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKG 505 (907)
Q Consensus 432 ~s~~g~~l~~g~~-dg~i~i~d~~~--~~~--~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~ 505 (907)
|+|+|+++++.+. ++.|.+|++.. +.. ...+...+ ....+......+.++|++++++++. .++.|.+|++..
T Consensus 182 ~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 182 FHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP--ADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred ECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC--CcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 9999999988877 89999999974 322 22221100 0001222345789999999998886 478999999864
Q ss_pred Cc----eeeeeecCcceeEEEEeeCCCEEEEEeC-CCeEEEEEcc
Q 002564 506 RD----LKSRWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVV 545 (907)
Q Consensus 506 ~~----~~~~~~~~~~i~~~~~s~~~~~la~~~~-dg~I~v~d~~ 545 (907)
.. .+...........+.++|+|++|+++.. +++|.+|+++
T Consensus 260 ~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 260 DGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 32 2333333345678999999999998876 8899999874
No 187
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=1.3e-17 Score=163.15 Aligned_cols=235 Identities=15% Similarity=0.205 Sum_probs=184.5
Q ss_pred EEEEcccccceEEEEe---eCCEEEEEecCCcEEEEecCCCCcc---ccceeeEecCCCcccEEEEcCCCCCCEEEEEec
Q 002564 86 VATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEEN---LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ 159 (907)
Q Consensus 86 ~~~~~~h~~~V~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~ 159 (907)
.-.+.||+++|..+.| +...|||||.|.+|.||++..+.+. ..++..+.+|...+..+++||... |.|++++.
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~ 152 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGS 152 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccC
Confidence 3447899999999996 6789999999999999999876653 345788889999999999999886 89999999
Q ss_pred CCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCE
Q 002564 160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPL 239 (907)
Q Consensus 160 dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~ 239 (907)
|++|.+||+.+|+.+.++. |...|.++.|+.+|.++++++.|..|+|||.++++.+..-..|....-..+-|..+|. +
T Consensus 153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred CceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 9999999999999999988 9999999999999999999999999999999999999888666455677778888998 6
Q ss_pred EEEEe---CCCcEEEEECCCceeeeee-ecccccCeEEEEEecCCCEEEEEc-CCCcEEEEEccCCCCCcceeEeccCCC
Q 002564 240 LASGA---SSGVISIWNLEKRRLQSVI-REAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHS 314 (907)
Q Consensus 240 l~sg~---~dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (907)
+.+|. ++..+.+||..+-..-..+ ....++.|.---|.+|...+..+| .|+.|+.|.+.....-...+..+ ...
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f-~S~ 309 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTF-SSK 309 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccc-ccC
Confidence 66664 5789999987654322222 112456677777788888776555 59999999876543222222222 223
Q ss_pred CCCeEEEEec
Q 002564 315 APPLCIRFYA 324 (907)
Q Consensus 315 ~~v~~i~~~~ 324 (907)
.+-..+.|.|
T Consensus 310 epQRG~g~mP 319 (472)
T KOG0303|consen 310 EPQRGMGFMP 319 (472)
T ss_pred Cccccccccc
Confidence 4455666665
No 188
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=1.7e-17 Score=153.92 Aligned_cols=291 Identities=17% Similarity=0.223 Sum_probs=201.0
Q ss_pred eeEEEEcccccceEEEEee-CCEEEEEecCCcEEEEecCCCCccccceeeEe-cCCCcccEEEEcCCCCCCEEEEEecCC
Q 002564 84 HQVATWSRHSAKVNLLLLF-GEHILSIDIDGNMFIWAFKGIEENLAPVGHVK-LDDKFTPTCIMHPDTYLNKVIVGSQEG 161 (907)
Q Consensus 84 ~~~~~~~~h~~~V~~l~~~-g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~l~~~s~dg 161 (907)
.+...+++|.+.|+++.|+ ..+|+++...|.|++|++.+... ...+. ++..++...-.-|.+ .+.+-+.|+
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~----~~~~r~~g~~~it~lq~~p~d---~l~tqgRd~ 77 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERD----LPLIRLFGRLFITNLQSIPND---SLDTQGRDP 77 (323)
T ss_pred CCeeEeccccchheehhhccchhhhcccccceEEEEEeecCcc----chhhhhhccceeeceeecCCc---chhhcCCCc
Confidence 3456788999999999995 66899999999999999999877 55555 344444444455543 588888999
Q ss_pred cEEEEecCCCeEEEEEcCCCCCEEEEEEcC-----CCC----EEEEEecCC-eEEEEEccCCceEEEEe---ecCCCCEE
Q 002564 162 SLQLWNISTKKKLYEFKGWGSSISSCVSSP-----ALD----VVAVGCSDG-KIHVHNVRYDEELVTFT---HSMRGAVT 228 (907)
Q Consensus 162 ~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp-----~~~----~la~g~~dg-~I~iwd~~~~~~~~~~~---~~~~~~v~ 228 (907)
.+.+|++.-+.-+.. |.-.++++.|.+ .++ .++.-++.. .+++-|......+.... ....+.+.
T Consensus 78 ~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvm 154 (323)
T KOG0322|consen 78 LLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVM 154 (323)
T ss_pred eEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCcee
Confidence 999999976543322 223334444433 111 222211111 11222211111111111 11235677
Q ss_pred EEEEecC--CCCEEEEEeCCCcEEEEECCCcee----------eeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEE
Q 002564 229 ALAFSSD--GQPLLASGASSGVISIWNLEKRRL----------QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 296 (907)
Q Consensus 229 ~l~fs~d--g~~~l~sg~~dg~I~iwd~~~~~~----------~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~ 296 (907)
|..+.-+ ...++++|..+|.+.+||+.++.. ..... .|..+|.++.|.+.-..=++++.+..+..|+
T Consensus 155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~a-sh~qpvlsldyas~~~rGisgga~dkl~~~S 233 (323)
T KOG0322|consen 155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNA-SHKQPVLSLDYASSCDRGISGGADDKLVMYS 233 (323)
T ss_pred eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchh-hccCcceeeeechhhcCCcCCCccccceeee
Confidence 7664332 334677788999999999999833 33333 6899999999998766678888889999999
Q ss_pred ccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCce
Q 002564 297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 376 (907)
Q Consensus 297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 376 (907)
++...+....-....-..-.+..++.-||++.++++|.|+.+|+|+.++......+.
T Consensus 234 l~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk----------------------- 290 (323)
T KOG0322|consen 234 LNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK----------------------- 290 (323)
T ss_pred eccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-----------------------
Confidence 987755544433444445678899999999999999999999999988765544332
Q ss_pred eEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 002564 377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL 453 (907)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~ 453 (907)
.|...+.+++|+|+...++.++.|++|.+|++
T Consensus 291 ---------------------------------------------yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 291 ---------------------------------------------YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ---------------------------------------------hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 45688999999999999999999999999986
No 189
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=1.4e-18 Score=185.01 Aligned_cols=285 Identities=20% Similarity=0.271 Sum_probs=224.7
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEE
Q 002564 173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW 252 (907)
Q Consensus 173 ~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iw 252 (907)
.+..+.+|...|.|..|...|.++++|+.|..++||..+++.++....+| .+.|+.++.+.+.. ++++++.|..|++|
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGh-s~ditdlavs~~n~-~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGH-SGDITDLAVSSNNT-MIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCC-ccccchhccchhhh-hhhhcccCceEEEE
Confidence 34556789999999999999999999999999999999999999999887 88999999998887 89999999999999
Q ss_pred ECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCC--CCcceeEeccCCCCCCeEEEEecCCCEEE
Q 002564 253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD--GDPRLLRFRSGHSAPPLCIRFYANGRHIL 330 (907)
Q Consensus 253 d~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~--~~~~~~~~~~~h~~~v~~i~~~~~g~~l~ 330 (907)
.+.++.++..+. +|++.|++++|+|-. +.+.||++++||.+... ..++.... ....-+.++.|..++..++
T Consensus 260 rl~~~~pvsvLr-ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~--~~~~~~~s~~~~~~~~~f~ 332 (1113)
T KOG0644|consen 260 RLPDGAPVSVLR-GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKF--TEKDLVDSILFENNGDRFL 332 (1113)
T ss_pred ecCCCchHHHHh-ccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCc--ccccceeeeeccccccccc
Confidence 999999999999 999999999999975 77889999999987221 11122211 1235567788888888999
Q ss_pred EEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeec
Q 002564 331 SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNF 410 (907)
Q Consensus 331 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~ 410 (907)
|++.|+.-+.|.........
T Consensus 333 Tgs~d~ea~n~e~~~l~~~~------------------------------------------------------------ 352 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQLAWRS------------------------------------------------------------ 352 (1113)
T ss_pred cccCCcccccchhhHhhhhc------------------------------------------------------------
Confidence 99999988877653211000
Q ss_pred eecceeeecCCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCC-E
Q 002564 411 VLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-L 488 (907)
Q Consensus 411 ~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~ 488 (907)
..+.-+..+.+ ..+.+++-.+-.+.+|++.+|....... +|...+..+.++|-+. .
T Consensus 353 --------------~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~--------ghsd~~yvLd~Hpfn~ri 410 (1113)
T KOG0644|consen 353 --------------NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM--------GHSDEVYVLDVHPFNPRI 410 (1113)
T ss_pred --------------cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc--------ccccceeeeeecCCCcHh
Confidence 00000111111 1344555566778899999998877765 8999999999999774 4
Q ss_pred EEEEecCCeEEEEECCCCceeeeee-cCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccce
Q 002564 489 MISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR 548 (907)
Q Consensus 489 l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~ 548 (907)
..+++.||...|||+-.|.+++.+. .+..+....||+||..++...+-|.++|.....++
T Consensus 411 ~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 411 AMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred hhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 5688999999999999988777664 35788889999999999999888999998765544
No 190
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.6e-17 Score=170.32 Aligned_cols=263 Identities=18% Similarity=0.293 Sum_probs=192.2
Q ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccC--------CceEEEEeecCCCCEEEEEEecCCCCEEEEEeCC
Q 002564 175 YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY--------DEELVTFTHSMRGAVTALAFSSDGQPLLASGASS 246 (907)
Q Consensus 175 ~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~--------~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~d 246 (907)
.++..|...|+.++|.|....|++++.||.|.+|++.. -+++.+|..| .++|.|+++.+++. .+.+|+.|
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH-~gPVl~v~v~~n~~-~~ysgg~D 365 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAH-EGPVLCVVVPSNGE-HCYSGGID 365 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecc-cCceEEEEecCCce-EEEeeccC
Confidence 36678899999999999999999999999999999932 2467888876 89999999999999 89999999
Q ss_pred CcEEEEECCCc----------eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCC
Q 002564 247 GVISIWNLEKR----------RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP 316 (907)
Q Consensus 247 g~I~iwd~~~~----------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~ 316 (907)
|+|+.|++... .....+. ||...|+.+++++....|++++.||+++.|+..... + +........+.
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~-Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~--~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLL-GHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEES--P-CTFGEPKEHGY 441 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhcccee-ccccceeeeeecccccceeeecCCceEEeeccCCcC--c-cccCCccccCC
Confidence 99999965421 2344455 999999999999999999999999999999764432 2 21111222344
Q ss_pred CeEEEEecCC-CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEE
Q 002564 317 PLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC 395 (907)
Q Consensus 317 v~~i~~~~~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 395 (907)
+.++.+.... .+.++...-+.--+.+.........+...
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~---------------------------------------- 481 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESS---------------------------------------- 481 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeecccc----------------------------------------
Confidence 5566654322 22222222222222222222211111100
Q ss_pred eeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCC
Q 002564 396 HMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNG 475 (907)
Q Consensus 396 ~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 475 (907)
..+.......+..+...|.+.+.+.+..++.|++||..++..+.... +|..
T Consensus 482 ---------------------~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~--------a~~~ 532 (577)
T KOG0642|consen 482 ---------------------ASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV--------AHKD 532 (577)
T ss_pred ---------------------CCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhee--------eccc
Confidence 00000112456777888899999999999999999999999988875 8999
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeee
Q 002564 476 EVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW 512 (907)
Q Consensus 476 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 512 (907)
.++++++.|+|.+|++++.|+.+++|.+....++...
T Consensus 533 svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 533 SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred eecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence 9999999999999999999999999998776655443
No 191
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.2e-15 Score=159.68 Aligned_cols=432 Identities=14% Similarity=0.150 Sum_probs=268.7
Q ss_pred CCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecC------------eEEEEEcC---eEEEEeCCee--EE
Q 002564 25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRD------------YTFAAYGN---HIAVVKRAHQ--VA 87 (907)
Q Consensus 25 ~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~------------~~~~a~g~---~I~vw~~~~~--~~ 87 (907)
+...+++++.+..|.+-|..+.+.+.....|+..|+.+.|.|- ...+|+++ +|.+||..-. +.
T Consensus 24 ~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~ 103 (1062)
T KOG1912|consen 24 SPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN 103 (1062)
T ss_pred CccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh
Confidence 4455667777899999999999999988999999999998854 34566654 4999995443 44
Q ss_pred EEcccccceEEEEe-----eC-CEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCC
Q 002564 88 TWSRHSAKVNLLLL-----FG-EHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEG 161 (907)
Q Consensus 88 ~~~~h~~~V~~l~~-----~g-~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg 161 (907)
.+..|..+|..+.| +. +.|++.....++.+|+..+|+. +-.............+.|-.. ..+..-+..|
T Consensus 104 ~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k----~Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g 178 (1062)
T KOG1912|consen 104 WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK----FWKYDYSHEILSCFRVDPFDS-RHFCVLGSKG 178 (1062)
T ss_pred hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce----eeccccCCcceeeeeeCCCCc-ceEEEEccCc
Confidence 48899999999986 23 6788888899999999999988 333333333333333555443 3444444556
Q ss_pred cEEEEecC-------CCeEEEEEcCCCC------------CE-------------EEEEEcCCCCEEEEEecCCeEEEEE
Q 002564 162 SLQLWNIS-------TKKKLYEFKGWGS------------SI-------------SSCVSSPALDVVAVGCSDGKIHVHN 209 (907)
Q Consensus 162 ~i~iwd~~-------~~~~~~~~~~h~~------------~I-------------~~l~~sp~~~~la~g~~dg~I~iwd 209 (907)
.+.+-+.- .|+..+.-..|.. .+ -.++|+|.-+.+....-...+.++|
T Consensus 179 ~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~d 258 (1062)
T KOG1912|consen 179 FVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFD 258 (1062)
T ss_pred eEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEc
Confidence 66665442 2444444334322 01 1246788765555555567899999
Q ss_pred ccCCceEEEEeecCCCCEEEEEEecCCC-CEEEEEeCCCcEEEEECCCceee----------------eeeecccccCeE
Q 002564 210 VRYDEELVTFTHSMRGAVTALAFSSDGQ-PLLASGASSGVISIWNLEKRRLQ----------------SVIREAHDNAII 272 (907)
Q Consensus 210 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~-~~l~sg~~dg~I~iwd~~~~~~~----------------~~~~~~h~~~V~ 272 (907)
++-..++...... .+.+.-+.+-|+++ ..|.+.-.||.+.+|--+..... ..+..-..-.+.
T Consensus 259 le~~~~l~vvpie-r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~ 337 (1062)
T KOG1912|consen 259 LEYECCLAVVPIE-RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPV 337 (1062)
T ss_pred chhhceeEEEEec-cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccc
Confidence 9998888888776 66777888888764 36788889999999976542111 111111111222
Q ss_pred EEEEecC-CCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecC-----CCEEEEEeCCCCEEEEEceec
Q 002564 273 SLHFFAN-EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN-----GRHILSAGQDRAFRLFSVIQD 346 (907)
Q Consensus 273 ~l~~~~~-~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~-----g~~l~s~~~dg~i~iwd~~~~ 346 (907)
.....|. ...++.--.+|.+.+|.+..+... .....+...-+..+.|+.. ...+.+-+.||. ...+
T Consensus 338 ~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~---~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~-----h~sG 409 (1062)
T KOG1912|consen 338 IGASCPSTPSALAVLYSSGDSTFWQLSNGRIH---LDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGS-----HSSG 409 (1062)
T ss_pred eeecCCCChhhhhhhhhcchhHHHhhhcCCcC---cccccccccccccccccCceeehhhccccchhhcCC-----CCCC
Confidence 2333343 333444445778889977643211 1111111222222233221 112333344440 0000
Q ss_pred ccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCc
Q 002564 347 QQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTA 426 (907)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~ 426 (907)
....+. .|. ..
T Consensus 410 s~~~~~---------------------~p~------------------------------------------------p~ 420 (1062)
T KOG1912|consen 410 STCVRM---------------------RPM------------------------------------------------PE 420 (1062)
T ss_pred ceeeec---------------------ccC------------------------------------------------cc
Confidence 000000 000 00
Q ss_pred eEEEEEcCCC-------CEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEE-------
Q 002564 427 VKACTISACG-------NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA------- 492 (907)
Q Consensus 427 v~~~~~s~~g-------~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~------- 492 (907)
.+-....|.| ..+++|+++|+|.++|+.++.....+. .|.+.|.++.|.....++-.+
T Consensus 421 ~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fs--------vht~~VkgleW~g~sslvSfsys~~n~~ 492 (1062)
T KOG1912|consen 421 LTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFS--------VHTSLVKGLEWLGNSSLVSFSYSHVNSA 492 (1062)
T ss_pred cceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhc--------ccccceeeeeeccceeEEEeeecccccc
Confidence 1111111111 368999999999999999999988885 899999999998765544222
Q ss_pred --ecCCeEEEEECCCCceeeee--e--cCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccc
Q 002564 493 --GYHGDIKVWDFKGRDLKSRW--E--VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL 547 (907)
Q Consensus 493 --~~dg~i~iwd~~~~~~~~~~--~--~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~ 547 (907)
+.-+.+.+-|+.+|..+... + ...+|..+..|..++|+++...+.-+.+||+++.
T Consensus 493 sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 493 SGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred ccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence 22245778888888654433 2 2389999999999999999999999999999664
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=3.1e-16 Score=171.50 Aligned_cols=290 Identities=19% Similarity=0.325 Sum_probs=208.1
Q ss_pred CEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecc--cccCeEEEEEecC--CCEEEEEcCCCcEEEEEccCCC
Q 002564 226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA--HDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTTD 301 (907)
Q Consensus 226 ~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~~~~--~~~l~s~~~d~~i~vw~~~~~~ 301 (907)
+...+.|+|-.. .+++++..-.|+|||.+.++.+..+..+ ....|+.+.+..+ ..++++|+.||.||||+--...
T Consensus 1066 ~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 456778888777 7888887789999999999998877632 2457999999874 4589999999999999633222
Q ss_pred -CCcceeEeccCCC-------CCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhccc
Q 002564 302 -GDPRLLRFRSGHS-------APPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 373 (907)
Q Consensus 302 -~~~~~~~~~~~h~-------~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (907)
+.++++....+-+ +.-.-+.|.....+|+++|.-+.|++||.........+..
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~------------------- 1205 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY------------------- 1205 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc-------------------
Confidence 4445554333221 1123455666555777777788899999876655444322
Q ss_pred CceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 002564 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFN 452 (907)
Q Consensus 374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~i~d 452 (907)
+....++++.-+. .|+.+++|..||.|++||
T Consensus 1206 ------------------------------------------------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD 1237 (1387)
T KOG1517|consen 1206 ------------------------------------------------GSSTLVTALSADLVHGNIIAAGFADGSVRVYD 1237 (1387)
T ss_pred ------------------------------------------------CCCccceeecccccCCceEEEeecCCceEEee
Confidence 1124455554433 369999999999999999
Q ss_pred CCCCccceeeeccccccccCcCCc--EEEEEEcCCCC-EEEEEecCCeEEEEECCCCceeeee------ecCcceeEEEE
Q 002564 453 LQSGISRGSYLDMSERSNYAHNGE--VVGVACDSTNT-LMISAGYHGDIKVWDFKGRDLKSRW------EVGCSLVKIVY 523 (907)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~i~~~~~ 523 (907)
........... ....|... |..+.+-+.|- .|++|+.||.|++||+........+ +.++..+++..
T Consensus 1238 ~R~a~~ds~v~-----~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~V 1312 (1387)
T KOG1517|consen 1238 RRMAPPDSLVC-----VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTV 1312 (1387)
T ss_pred cccCCccccce-----eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeee
Confidence 87654421111 11478776 99999988764 5999999999999999874222222 22346999999
Q ss_pred eeCCCEEEEEeCCCeEEEEEcccceeEEEeec-------CCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCc
Q 002564 524 HRVNGLLATVADDLVIRLFDVVALRMVRKFEG-------HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590 (907)
Q Consensus 524 s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~-------h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~ 590 (907)
|++...+|+|+. +.|.||++...+ +..++. ..+.+.+++|+|.--.||.|+.|.+|.||....++
T Consensus 1313 H~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1313 HEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ccCCCeeeecCc-ceEEEEecChhh-hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 999999999998 999999987433 222221 23568999999999899999999999999876553
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=7.6e-15 Score=143.37 Aligned_cols=272 Identities=15% Similarity=0.249 Sum_probs=199.6
Q ss_pred cCCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEEcCe---EEEEeCCee--EEEEcccccceEE
Q 002564 24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAHQ--VATWSRHSAKVNL 98 (907)
Q Consensus 24 ~~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~---I~vw~~~~~--~~~~~~h~~~V~~ 98 (907)
.++..+++.+.-.-.++|++......+-.......|.-+-|+.....++.-.+ +++.+..+. +..+. -..+|.+
T Consensus 14 Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~ 92 (391)
T KOG2110|consen 14 NQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILA 92 (391)
T ss_pred ccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEE
Confidence 34455555555566789998876554333444566778888888777776433 777765443 33322 2357889
Q ss_pred EEeeCCEEEEEecCCcEEEEecCCCCccccceeeEecC-CCcccEEEEcCCCCCCEEEE--EecCCcEEEEecCCCeEEE
Q 002564 99 LLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLD-DKFTPTCIMHPDTYLNKVIV--GSQEGSLQLWNISTKKKLY 175 (907)
Q Consensus 99 l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~l~~--~s~dg~i~iwd~~~~~~~~ 175 (907)
+..+.++|+.+-.+. |.|||+.+.+. +.++... ......|+++|+....+++. ....|.|.+||..+-+.+.
T Consensus 93 VrmNr~RLvV~Lee~-IyIydI~~Mkl----LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~ 167 (391)
T KOG2110|consen 93 VRMNRKRLVVCLEES-IYIYDIKDMKL----LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN 167 (391)
T ss_pred EEEccceEEEEEccc-EEEEeccccee----ehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee
Confidence 999999999998554 99999999988 6666544 44555788888775457775 3346899999999999999
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEecCCe-EEEEEccCCceEEEEeecC-CCCEEEEEEecCCCCEEEEEeCCCcEEEEE
Q 002564 176 EFKGWGSSISSCVSSPALDVVAVGCSDGK-IHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSGVISIWN 253 (907)
Q Consensus 176 ~~~~h~~~I~~l~~sp~~~~la~g~~dg~-I~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd 253 (907)
.+..|.+++-|++|+++|.+||+++..|+ |||+.+.+|+.+..|+.+. ...|.+++|+||++ +|++.+..++|.+|.
T Consensus 168 ~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 168 TINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFK 246 (391)
T ss_pred EEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEE
Confidence 99999999999999999999999999987 6899999999999998653 24789999999999 888888999999998
Q ss_pred CCCceee-------------------------------------eeeeccccc--CeEEEEEecCCCEEEEEcCCCcEEE
Q 002564 254 LEKRRLQ-------------------------------------SVIREAHDN--AIISLHFFANEPVLMSASADNSIKM 294 (907)
Q Consensus 254 ~~~~~~~-------------------------------------~~~~~~h~~--~V~~l~~~~~~~~l~s~~~d~~i~v 294 (907)
++..... ...+....+ .+..+.-.+..+++..++.||.+..
T Consensus 247 L~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~ 326 (391)
T KOG2110|consen 247 LEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYS 326 (391)
T ss_pred ecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEE
Confidence 8643100 000000011 2233332346778889999999999
Q ss_pred EEccCCCC
Q 002564 295 WIFDTTDG 302 (907)
Q Consensus 295 w~~~~~~~ 302 (907)
|.++..++
T Consensus 327 y~l~~~~g 334 (391)
T KOG2110|consen 327 YRLPPKEG 334 (391)
T ss_pred EEcCCCCC
Confidence 99887643
No 194
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=2e-16 Score=173.01 Aligned_cols=308 Identities=15% Similarity=0.227 Sum_probs=215.4
Q ss_pred CCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCC---CCCEEEEE
Q 002564 112 DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW---GSSISSCV 188 (907)
Q Consensus 112 dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h---~~~I~~l~ 188 (907)
+..|..||...... .......+.+||-. ..++++...-.|++||.+.++.+..|..+ ...|+.+.
T Consensus 1049 t~~i~~W~~~~~~~----------n~~~pk~~~~hpf~--p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~ 1116 (1387)
T KOG1517|consen 1049 TNPIGNWDQKFMTG----------NNQPPKTLKFHPFE--PQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLE 1116 (1387)
T ss_pred cccccchHHHHHhc----------CCCCCceeeecCCC--ceeEEcCCcceEEEEecccCceeccccCCCCCCCccceee
Confidence 45566776543222 22344567788877 77888887788999999999998888654 46788888
Q ss_pred EcC--CCCEEEEEecCCeEEEEEccCC-----ceEEEEee------cCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 002564 189 SSP--ALDVVAVGCSDGKIHVHNVRYD-----EELVTFTH------SMRGAVTALAFSSDGQPLLASGASSGVISIWNLE 255 (907)
Q Consensus 189 ~sp--~~~~la~g~~dg~I~iwd~~~~-----~~~~~~~~------~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~ 255 (907)
+-. |..++.+|+.||.|+||+--.. +.+..+.. ...+.-.-+.|..... +|.+++.-..|+|||..
T Consensus 1117 liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1117 LINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAH 1195 (1387)
T ss_pred eecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecc
Confidence 765 4458999999999999974322 22222221 1011113456666655 44555557899999999
Q ss_pred CceeeeeeecccccCeEEEEEec-CCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCC--CeEEEEecCCC-EEEE
Q 002564 256 KRRLQSVIREAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP--PLCIRFYANGR-HILS 331 (907)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~--v~~i~~~~~g~-~l~s 331 (907)
.......+..+....|+++.-.. .|+.++.|..||+|++||.+..... ..+...+.|... |..+.+.+.|- .|++
T Consensus 1196 ~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G~~elvS 1274 (1387)
T KOG1517|consen 1196 KEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQGLGELVS 1274 (1387)
T ss_pred cceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc-ccceeecccCCcccceeEEeecCCCcceee
Confidence 99999888867777888887654 4689999999999999998876543 345556678877 99999988654 4999
Q ss_pred EeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeece
Q 002564 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411 (907)
Q Consensus 332 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~ 411 (907)
|+.||.|++||++.......+.
T Consensus 1275 gs~~G~I~~~DlR~~~~e~~~~---------------------------------------------------------- 1296 (1387)
T KOG1517|consen 1275 GSQDGDIQLLDLRMSSKETFLT---------------------------------------------------------- 1296 (1387)
T ss_pred eccCCeEEEEecccCcccccce----------------------------------------------------------
Confidence 9999999999987531100000
Q ss_pred ecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEE
Q 002564 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS 491 (907)
Q Consensus 412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 491 (907)
- +.-| ...+..+++.+++....+++
T Consensus 1297 -----------------i------------------v~~~--------------------~yGs~lTal~VH~hapiiAs 1321 (1387)
T KOG1517|consen 1297 -----------------I------------------VAHW--------------------EYGSALTALTVHEHAPIIAS 1321 (1387)
T ss_pred -----------------e------------------eecc--------------------ccCccceeeeeccCCCeeee
Confidence 0 0000 11224778888888888888
Q ss_pred EecCCeEEEEECCCCceeeeeec-------CcceeEEEEeeCCCEEEEEeCCCeEEEEEcccc
Q 002564 492 AGYHGDIKVWDFKGRDLKSRWEV-------GCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL 547 (907)
Q Consensus 492 ~~~dg~i~iwd~~~~~~~~~~~~-------~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~ 547 (907)
|+. +.|+||++...++...... ...+.|++|||-.-++|+|+.|..|.||.....
T Consensus 1322 Gs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1322 GSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 887 8888888765433222111 167799999999999999999999999987654
No 195
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=1.5e-16 Score=149.48 Aligned_cols=296 Identities=18% Similarity=0.219 Sum_probs=202.8
Q ss_pred CCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecC-------CcEEEEecCCC---------eEEE
Q 002564 112 DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-------GSLQLWNISTK---------KKLY 175 (907)
Q Consensus 112 dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~d-------g~i~iwd~~~~---------~~~~ 175 (907)
|+.|.+-+++.+.-.. ..+.+..+.+.+...+-+|... ..|+++..+ -...||.+... +++.
T Consensus 39 dNqVhll~~d~e~s~l-~skvf~h~agEvw~las~P~d~-~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~ 116 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSEL-LSKVFFHHAGEVWDLASSPFDQ-RILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA 116 (370)
T ss_pred cceeEEEEecCccchh-hhhhhhcCCcceehhhcCCCCC-ceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence 6777777776544311 1244555677778888888773 455555431 23678988543 2333
Q ss_pred EEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCce-EEEEee----cCCCCEEEEEEec--CCCCEEEEEeCCC
Q 002564 176 EFK-GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE-LVTFTH----SMRGAVTALAFSS--DGQPLLASGASSG 247 (907)
Q Consensus 176 ~~~-~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~-~~~~~~----~~~~~v~~l~fs~--dg~~~l~sg~~dg 247 (907)
.+. .+-+.|.|+.|.|+++.+|+-. |..|.+|++..+.. +..+.. .+....++-+|+| ||. .+++ ..|+
T Consensus 117 ~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn-qv~t-t~d~ 193 (370)
T KOG1007|consen 117 SLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN-QVAT-TSDS 193 (370)
T ss_pred cCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc-eEEE-eCCC
Confidence 443 3456899999999999988776 78899999997765 333332 2345678889999 555 4554 4589
Q ss_pred cEEEEECCCceeeeeeecccccCeEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-C
Q 002564 248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-N 325 (907)
Q Consensus 248 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~ 325 (907)
++..||+++.+....+..+|...|..+.|.|+.+ +|++|+.||.|++||.+..+ ..+..+.+|...|.+++|+| .
T Consensus 194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---~pv~el~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---FPVQELPGHSHWVWAVRFNPEH 270 (370)
T ss_pred cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC---ccccccCCCceEEEEEEecCcc
Confidence 9999999999999999889999999999999875 78899999999999987654 45778889999999999999 5
Q ss_pred CCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEE
Q 002564 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVW 405 (907)
Q Consensus 326 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w 405 (907)
.+++++++.|..|.+|....-.....+....-.. .........+.
T Consensus 271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~des---e~e~~dseer~-------------------------------- 315 (370)
T KOG1007|consen 271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDES---ESEDEDSEERV-------------------------------- 315 (370)
T ss_pred ceEEEecCCCceeEEEeccccccccccccccccc---cCcchhhHHhc--------------------------------
Confidence 6788999999999999765432211111000000 00000000000
Q ss_pred EeeeceecceeeecCCCCCCceEEEEEcCCCCEE-EEEeCCCcEEEEeCC
Q 002564 406 RLQNFVLGEHILRPCPENPTAVKACTISACGNFA-VLGTAGGWIERFNLQ 454 (907)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~g~~dg~i~i~d~~ 454 (907)
+.+....+.....|...|.+++||.-..++ ++-+.||++.|=++.
T Consensus 316 ----kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 316 ----KPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ----ccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 011123344555788999999999877665 556789988876654
No 196
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2e-15 Score=138.42 Aligned_cols=285 Identities=15% Similarity=0.173 Sum_probs=204.2
Q ss_pred CeEEEEEecCCCEEEEEcCCCcEEEEEccCCC------CCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEc
Q 002564 270 AIISLHFFANEPVLMSASADNSIKMWIFDTTD------GDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343 (907)
Q Consensus 270 ~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~------~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~ 343 (907)
.|.+-+++|.+++|+.|..+|.|.+..+.... .....+....+|.+++..++|+ ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 45666889999999999999999999876431 1122334457999999999999 34677776 599999987
Q ss_pred eecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCC
Q 002564 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423 (907)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~ 423 (907)
+...... +.-++|......... .-.
T Consensus 89 ~E~~es~-------------------------------------------------~~K~lwe~~~P~~~~------~~e 113 (325)
T KOG0649|consen 89 NEEEESL-------------------------------------------------ATKRLWEVKIPMQVD------AVE 113 (325)
T ss_pred hhhhhhc-------------------------------------------------cchhhhhhcCccccC------ccc
Confidence 5433211 111122222111000 011
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 002564 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (907)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 503 (907)
-..|.++.+.|..+-++.+..|+.++.||+.+|+....+. +|.+.|.+++--..+..+++|+.||++|+||.
T Consensus 114 vPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r--------GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~ 185 (325)
T KOG0649|consen 114 VPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR--------GHTDYVHSVVGRNANGQILSGAEDGTVRVWDT 185 (325)
T ss_pred CCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc--------CCcceeeeeeecccCcceeecCCCccEEEEec
Confidence 2568899999998888888899999999999999999996 99999999998666667999999999999999
Q ss_pred CCCceeeeeecC-----------cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEE
Q 002564 504 KGRDLKSRWEVG-----------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWL 572 (907)
Q Consensus 504 ~~~~~~~~~~~~-----------~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l 572 (907)
++++.+..+..- ..|.+ ..-+...+++|+ ...+.+|.+.+.++...|. -..++..+.|-.| .+
T Consensus 186 kt~k~v~~ie~yk~~~~lRp~~g~wiga--la~~edWlvCGg-Gp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~v 259 (325)
T KOG0649|consen 186 KTQKHVSMIEPYKNPNLLRPDWGKWIGA--LAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CV 259 (325)
T ss_pred cccceeEEeccccChhhcCcccCceeEE--EeccCceEEecC-CCceeEEeccCCCceEEEe-cccceeEeeeecc--eE
Confidence 999988877542 22333 344567777765 4579999999988887776 5567888889654 68
Q ss_pred EEEeCCCcEEEEEcCCCceeeEeeeCCc-eEEEEECCCCceEEEEEecCCeEEEee
Q 002564 573 LSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV 627 (907)
Q Consensus 573 ~s~s~Dg~I~vwd~~~~~~~~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~ 627 (907)
++++..+.|.-|.+. |.+-....+.++ +++..|+..--.++++....+.+.+..
T Consensus 260 l~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 260 LIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred EEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 888888899999875 666566665554 778887755444444433333466654
No 197
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.74 E-value=4.6e-15 Score=157.71 Aligned_cols=327 Identities=13% Similarity=0.093 Sum_probs=209.1
Q ss_pred EEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEE
Q 002564 107 LSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISS 186 (907)
Q Consensus 107 ~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~ 186 (907)
++-..+|.|.|.|..+.+. +.++......-....++|++ +++++++.||.|.++|+.+++.+.+++. .....+
T Consensus 10 V~~~~~~~v~viD~~t~~~----~~~i~~~~~~h~~~~~s~Dg--r~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~ 82 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKV----VARIPTGGAPHAGLKFSPDG--RYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRG 82 (369)
T ss_dssp EEEGGGTEEEEEETTT-SE----EEEEE-STTEEEEEE-TT-S--SEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEE
T ss_pred EEecCCCEEEEEECCCCeE----EEEEcCCCCceeEEEecCCC--CEEEEEcCCCeEEEEECCcccEEEEEec-CCCcce
Confidence 4455689999999999888 88887665554556789999 8899999999999999999999999987 556788
Q ss_pred EEEcCCCCEEEEEe-cCCeEEEEEccCCceEEEEeec------CCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCcee
Q 002564 187 CVSSPALDVVAVGC-SDGKIHVHNVRYDEELVTFTHS------MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL 259 (907)
Q Consensus 187 l~~sp~~~~la~g~-~dg~I~iwd~~~~~~~~~~~~~------~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~ 259 (907)
+++|+||++++++. ..+.+.++|.++.+.+..+... ....+.++..++....++++--..+.|.+-|....+.
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 99999999998775 5799999999999999887643 1346788888888874444444568898889877654
Q ss_pred eeeeecccccCeEEEEEecCCCEEEEE-cCCCcEEEEEccCCCCCcceeEec----cCCCCCCeEEEEecCCCEEEEEeC
Q 002564 260 QSVIREAHDNAIISLHFFANEPVLMSA-SADNSIKMWIFDTTDGDPRLLRFR----SGHSAPPLCIRFYANGRHILSAGQ 334 (907)
Q Consensus 260 ~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~d~~i~vw~~~~~~~~~~~~~~~----~~h~~~v~~i~~~~~g~~l~s~~~ 334 (907)
................|.|++++++.+ ..++.|-++|.... ...... ..|..+...+ .+|....+...+.
T Consensus 163 ~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~----k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~ 237 (369)
T PF02239_consen 163 LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG----KLVALIDTGKKPHPGPGANF-PHPGFGPVWATSG 237 (369)
T ss_dssp EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT----EEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEB
T ss_pred cceeeecccccccccccCcccceeeecccccceeEEEeeccc----eEEEEeeccccccccccccc-cCCCcceEEeecc
Confidence 432222345567889999999987664 55678888876543 222111 1233332222 2232211111111
Q ss_pred CCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecc
Q 002564 335 DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGE 414 (907)
Q Consensus 335 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~ 414 (907)
.
T Consensus 238 ~------------------------------------------------------------------------------- 238 (369)
T PF02239_consen 238 L------------------------------------------------------------------------------- 238 (369)
T ss_dssp S-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred eeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEE--
Q 002564 415 HILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-- 492 (907)
Q Consensus 415 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-- 492 (907)
+...+..-..+.+.+|+..+.+....+. ...+. ..+..+|+++++.+.
T Consensus 239 ---------------------~~~~~~~ig~~~v~v~d~~~wkvv~~I~--------~~G~g-lFi~thP~s~~vwvd~~ 288 (369)
T PF02239_consen 239 ---------------------GYFAIPLIGTDPVSVHDDYAWKVVKTIP--------TQGGG-LFIKTHPDSRYVWVDTF 288 (369)
T ss_dssp ---------------------SSSEEEEEE--TTT-STTTBTSEEEEEE---------SSSS---EE--TT-SEEEEE-T
T ss_pred ---------------------cceecccccCCccccchhhcCeEEEEEE--------CCCCc-ceeecCCCCccEEeecc
Confidence 1111111112234456666777777664 33444 778889999999988
Q ss_pred --ecCCeEEEEECCCCceeeeeecCc--ceeEEEEeeCCCEEEEEeC--CCeEEEEEcccceeEEEee
Q 002564 493 --GYHGDIKVWDFKGRDLKSRWEVGC--SLVKIVYHRVNGLLATVAD--DLVIRLFDVVALRMVRKFE 554 (907)
Q Consensus 493 --~~dg~i~iwd~~~~~~~~~~~~~~--~i~~~~~s~~~~~la~~~~--dg~I~v~d~~~~~~~~~~~ 554 (907)
...+.|.++|..+.+....+.... .+..+.|+++|+.+.++.. ++.|.+||..+.+.+.++.
T Consensus 289 ~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 289 LNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp T-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 455899999999998887776554 4999999999997666544 3479999999999998887
No 198
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=4.1e-16 Score=158.79 Aligned_cols=225 Identities=19% Similarity=0.284 Sum_probs=160.9
Q ss_pred cCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEec--CCCEEEEEcCCCcEEEEEccC
Q 002564 222 SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA--NEPVLMSASADNSIKMWIFDT 299 (907)
Q Consensus 222 ~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~d~~i~vw~~~~ 299 (907)
+|.+.|.|+.|+.||. +|++|+.|-.+.|||.-..++++.+..+|...|.++.|.| +.+++++|..|..|+++|++.
T Consensus 48 GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred cccceecceeecCCCC-EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 3589999999999999 9999999999999999999999999999999999999999 456899999999999999985
Q ss_pred CCC------CcceeEeccCCCCCCeEEEEecCC-CEEEEEeCCCCEEEEEceecccceeec-hhhhhHHHhhccchhhhc
Q 002564 300 TDG------DPRLLRFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELS-QRHVAKRARKLKMKEEEL 371 (907)
Q Consensus 300 ~~~------~~~~~~~~~~h~~~v~~i~~~~~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 371 (907)
..+ .....+....|...|..++..|++ ..+.+++.||+++-+|++.......-. .+..
T Consensus 127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~-------------- 192 (758)
T KOG1310|consen 127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI-------------- 192 (758)
T ss_pred ccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH--------------
Confidence 322 223445567899999999999987 788999999999999998643221100 0000
Q ss_pred ccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCC-CEEEEEeCCCcEEE
Q 002564 372 KLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTAGGWIER 450 (907)
Q Consensus 372 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~i 450 (907)
+......--...++.++|.. .++++|+++--.++
T Consensus 193 ---------------------------------------------l~ny~~~lielk~ltisp~rp~~laVGgsdpfarL 227 (758)
T KOG1310|consen 193 ---------------------------------------------LVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARL 227 (758)
T ss_pred ---------------------------------------------HHHhchhhheeeeeeecCCCCceEEecCCCchhhh
Confidence 00000011456788888865 67899999999999
Q ss_pred EeCCC--------Cc----------cceeeeccccccccC-cC---CcEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 002564 451 FNLQS--------GI----------SRGSYLDMSERSNYA-HN---GEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 506 (907)
Q Consensus 451 ~d~~~--------~~----------~~~~~~~~~~~~~~~-h~---~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 506 (907)
||... +. .+..|.........+ .. ..++-++|+|+|.-|+..-....|+++|+..+
T Consensus 228 YD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 228 YDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred hhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence 99421 11 011111000000011 00 12567889999977766666678899987654
No 199
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=2.5e-16 Score=147.94 Aligned_cols=251 Identities=16% Similarity=0.225 Sum_probs=190.5
Q ss_pred EcccccceEEEE--e-eCCEEEEEecC-------CcEEEEecCCCCcc-----ccceeeEec-CCCcccEEEEcCCCCCC
Q 002564 89 WSRHSAKVNLLL--L-FGEHILSIDID-------GNMFIWAFKGIEEN-----LAPVGHVKL-DDKFTPTCIMHPDTYLN 152 (907)
Q Consensus 89 ~~~h~~~V~~l~--~-~g~~l~s~~~d-------g~v~vWd~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~p~~~~~ 152 (907)
+..|.+.|..++ | +...|+++-.+ -.+.||.+...... ...+..+.. +-+.+.++.|.|++ .
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns--~ 136 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS--D 136 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC--C
Confidence 777889999988 3 56677776542 13789998764432 112333321 22345666799988 7
Q ss_pred EEEEEecCCcEEEEecCCCeE-EEEEc-----CCCCCEEEEEEcC--CCCEEEEEecCCeEEEEEccCCceEEEEeecCC
Q 002564 153 KVIVGSQEGSLQLWNISTKKK-LYEFK-----GWGSSISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMR 224 (907)
Q Consensus 153 ~l~~~s~dg~i~iwd~~~~~~-~~~~~-----~h~~~I~~l~~sp--~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~ 224 (907)
++++-. +..|.+|++..+.. +..+. ++....++-+|+| +++.+++.+ |+++..||+++.+....+...|.
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHg 214 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHG 214 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhc
Confidence 888775 77899999987765 44332 3566778889999 677777755 68999999999999999988888
Q ss_pred CCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc-eeeeeeecccccCeEEEEEecC-CCEEEEEcCCCcEEEEEccCCCC
Q 002564 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFAN-EPVLMSASADNSIKMWIFDTTDG 302 (907)
Q Consensus 225 ~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~d~~i~vw~~~~~~~ 302 (907)
..|..+.|+|+.+++|++|+.||.|++||.+.- .++..+. +|...|.++.|+|. .++++++|.|..|.+|....-..
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS 293 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS 293 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-CCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence 899999999999999999999999999999865 4566666 99999999999995 45888999999999995432210
Q ss_pred C-------------------------cceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEce
Q 002564 303 D-------------------------PRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVI 344 (907)
Q Consensus 303 ~-------------------------~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~ 344 (907)
. -..+.++..|...|.+++|+. |.=.+++-+.||.+.|=++.
T Consensus 294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 0 112346678999999999998 66667888999999886653
No 200
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.74 E-value=7.2e-16 Score=160.07 Aligned_cols=488 Identities=14% Similarity=0.102 Sum_probs=280.2
Q ss_pred cCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEE
Q 002564 324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (907)
Q Consensus 324 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (907)
|...+++....||.+++|+...++...++... ..-.+.+...
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~--------------------------------------~~~s~t~~~~ 44 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPI--------------------------------------ASLSGTCTYT 44 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccc--------------------------------------hhccCcceeE
Confidence 34568999999999999999988877765431 1112334455
Q ss_pred EEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEc
Q 002564 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD 483 (907)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 483 (907)
.|.+.-.......... -.....+.+-..++.|...|.|.+|+...|+....+.. ..|.+.|.++.++
T Consensus 45 ~w~L~~~~s~~k~~~~-------~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st------~~h~~~v~~~~~~ 111 (541)
T KOG4547|consen 45 KWGLSADYSPMKWLSL-------EKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLST------DKHYGNVNEILDA 111 (541)
T ss_pred EEEEEeccchHHHHhH-------HHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEec------CCCCCcceeeecc
Confidence 5654322111111100 01112234556789999999999999999999888863 5799999999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeee
Q 002564 484 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITD 562 (907)
Q Consensus 484 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~ 562 (907)
.+-..|.+++.|+.+..|+...++.++.+... ..+.+++++||+..+++++ +.|++||+++++.+..|.||.++|.+
T Consensus 112 ~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t 189 (541)
T KOG4547|consen 112 QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRT 189 (541)
T ss_pred cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEE
Confidence 99999999999999999999999999988766 6788999999999999986 78999999999999999999999999
Q ss_pred EEECCC-----CcEEE-EEeCCCcEEEEEcCC----CceeeEeeeCCc-eEEEEE-CCCCc---eEEEEEecCCeEEEee
Q 002564 563 FCFSED-----GKWLL-SSGMDGSLRIWDVIL----ARQIDAIHVDVS-ITALSL-SPNMD---VLATAHVDQNGVYLWV 627 (907)
Q Consensus 563 l~fspd-----g~~l~-s~s~Dg~I~vwd~~~----~~~~~~~~~~~~-v~~l~~-spdg~---~lat~~~d~~~i~lW~ 627 (907)
+.|.-+ |.++. ++..+..+.+|-+.. +.....+..+.. ++.=.+ ..|+. .+|+...++ +..|.
T Consensus 190 ~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv~~ds~~~ed~~~~l~lAst~~~g--~v~~~ 267 (541)
T KOG4547|consen 190 LSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIPVTSDSGLLEDGTIPLVLASTLIPG--IVHLK 267 (541)
T ss_pred EEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccCCCCeEeccccccccccceEEeeeccCc--eeeec
Confidence 999877 66655 445667788887654 233344444332 322222 23443 244444443 55554
Q ss_pred cccccccCCCCccCCCCCcceeecCCCccCCCCccCC--C-CCCCCCccCCCCCCCCCCC----CCcccc--ccCceeec
Q 002564 628 NRCMFSGDSNIDSYASGKEIVSVKMPSVSSVEGCQDE--N-SSQPDVHRTDRVPKDSFGL----PTFKQQ--IPDLVTLS 698 (907)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~l~tls 698 (907)
....-.-... .+...........|+.-...-..+. . ..-.+ -....-......+ ...+.. ....+++.
T Consensus 268 ~~nl~~l~~~--~~~kv~~~~~~~s~g~~a~~~~~~~~~~~l~~g~-~~~ps~~~vsln~~~~l~l~~R~l~~~~~~~~~ 344 (541)
T KOG4547|consen 268 LSNLIILLHK--KIVKVNGYNADSSKGFLAALFGIDKAHALLAYGS-LVNPSFVRVSLNLGQKLHLMDRDLSGSGKLKLV 344 (541)
T ss_pred cccHHHHhcC--ccccccceeeecccchhhhhcccchhhhhhhccc-ccCchhhhhhhhhcchhhhhhhhccCCccccee
Confidence 3221111110 0000000011111210000000000 0 00000 0000000000000 000000 00011111
Q ss_pred CCchhhhhhccchHHHhhhCCCC-CCCCCCCCCCccccCCCCCCcccccCCCCCCcccchhhhccCCCC--CCC-CccHH
Q 002564 699 LLPKSQWQSLINLDIIKARNKPI-EPPKKPEKAPFFLPSVPSLSGEILFKPSESTKEDTESLKVGNKTK--PDI-PVSQF 774 (907)
Q Consensus 699 ~~p~~~~~~l~~l~~i~~r~kp~-~~~~~~~~~pffl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~ 774 (907)
..-...-|...|-+. +=+.|. +.+++|.-. -||+... .. +.+...+. .-....-...+. ... ..-.+
T Consensus 345 ~~k~~~rqv~~n~~~--k~~~~~~~q~~~p~~~--~l~v~~~-~g--~iEv~~ea--rl~~l~i~~~~~~~k~~~~tll~ 415 (541)
T KOG4547|consen 345 TSKEGKRQVVLNSVA--KLGEAEVIQEEPPLTE--DLPVLTK-GG--DIEVSTEA--RLSALDINLTSNADKSDESTLLA 415 (541)
T ss_pred eeecccceeecchhh--hhcchhhhcccCcchh--cchhhhc-CC--cceeeehh--hhhhcccccccccchhhhhccch
Confidence 110111111111000 000110 000000000 0111110 00 00000000 000000000000 011 11245
Q ss_pred HHHHhhccccCChHHHHHHHHhCCCCcchheeccccccCCCccccccCcchHHHHHHHHHHHHHHHhc-CCCHHhHHHHH
Q 002564 775 IQLLHSCAEMKNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISC-RNNFEFIQAVI 853 (907)
Q Consensus 775 ~~~l~~~~~~~~~~~~~~~l~~~~~s~~~~ei~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 853 (907)
...|.++...+++.-.-++|.+++|-.|+.++-++.+ +.+..|+..+..++++ ..+-.....|+
T Consensus 416 s~~l~Q~L~srd~~~~~~Vl~s~d~~lik~tv~rme~---------------st~~pll~ela~rlq~~~~~~~~~l~w~ 480 (541)
T KOG4547|consen 416 SVSLNQALSSRDSHILTDVLISRDEELIKSTVLRMEE---------------STAPPLLEELAPRLQSRASRGRILLVWL 480 (541)
T ss_pred hhhhhhhhcccccccchhhhccCChHHHHHHHhhcCh---------------hhccchhccchhhhccccccCchhhhhh
Confidence 6777888889999999999999999999999999876 7788899999999999 77888899999
Q ss_pred HHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002564 854 RLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQ 893 (907)
Q Consensus 854 ~~~l~~h~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 893 (907)
+..|-.|+.+|++.|.....+..+.+.-.+..+.+..++.
T Consensus 481 k~~l~~h~~yl~sv~~~~~~l~~~~~~~~~~ae~~~~~la 520 (541)
T KOG4547|consen 481 KTRLTSHNSYLSSVPDQLETLSGKMQKDLRTAEQLGHLLA 520 (541)
T ss_pred hhhhhcccceeecCcchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999987666677666666666666665543
No 201
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.73 E-value=8.5e-16 Score=167.02 Aligned_cols=284 Identities=14% Similarity=0.179 Sum_probs=200.6
Q ss_pred CcEEEEECCCc-eeeeeeecccccCeEEEEEecCC-CEEEEEcCCCcEEEEEccCCCCC--cceeEeccCCCCCCeEEEE
Q 002564 247 GVISIWNLEKR-RLQSVIREAHDNAIISLHFFANE-PVLMSASADNSIKMWIFDTTDGD--PRLLRFRSGHSAPPLCIRF 322 (907)
Q Consensus 247 g~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~d~~i~vw~~~~~~~~--~~~~~~~~~h~~~v~~i~~ 322 (907)
+.+.+|++... .+...+ .-...|.++.|+|.. .+++.|..+|.|.+||+...... ..+-.....|..+++.+.|
T Consensus 222 ~~~~vW~~~~p~~Pe~~~--~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL--ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCCCceEEE--ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 47999999887 333333 367899999999955 57778888999999999876652 2333444578999999999
Q ss_pred ecCC--CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCc
Q 002564 323 YANG--RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTA 400 (907)
Q Consensus 323 ~~~g--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 400 (907)
..+. .-+++++.||.|..|+++.-....+........
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~----------------------------------------- 338 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK----------------------------------------- 338 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhccccccc-----------------------------------------
Confidence 8744 459999999999999876544322211100000
Q ss_pred eEEEEEeeeceecceeeecCCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEE
Q 002564 401 QAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG 479 (907)
Q Consensus 401 ~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~ 479 (907)
+ ..........++++.|.+. -+.+++|+..|.|..-+-...................|.+.|..
T Consensus 339 --------------~-~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~ 403 (555)
T KOG1587|consen 339 --------------H-KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYA 403 (555)
T ss_pred --------------c-cccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEe
Confidence 0 0000012256788888875 47799999999998854443332221111111122478999999
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECC-CCceeeeeecC-cceeEEEEeeCC-CEEEEEeCCCeEEEEEcccc--eeEEEee
Q 002564 480 VACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVG-CSLVKIVYHRVN-GLLATVADDLVIRLFDVVAL--RMVRKFE 554 (907)
Q Consensus 480 l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~-~~i~~~~~s~~~-~~la~~~~dg~I~v~d~~~~--~~~~~~~ 554 (907)
+.++|-+..++..+.|.++++|... ...++..+... ..+++++|||-. ..++++..||.+.+||+... .++.+..
T Consensus 404 v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~ 483 (555)
T KOG1587|consen 404 VSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK 483 (555)
T ss_pred eecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc
Confidence 9999988665555559999999987 56666666555 559999999965 47788888999999999654 4455555
Q ss_pred cCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCC
Q 002564 555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (907)
Q Consensus 555 ~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~ 588 (907)
-+....+.+.|+++|+.|+.|...|++.+|++..
T Consensus 484 ~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 484 VCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 5566677888999999999999999999999964
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.73 E-value=4.3e-16 Score=158.20 Aligned_cols=263 Identities=19% Similarity=0.239 Sum_probs=187.8
Q ss_pred CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEec-------CCCEEEEEcCCCcEEEEE
Q 002564 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-------NEPVLMSASADNSIKMWI 296 (907)
Q Consensus 224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-------~~~~l~s~~~d~~i~vw~ 296 (907)
...+.|+.|+.+.. ++.+++ |..+.+|.-.+......+....+.-.+.+..-+ ....++.++.||.+.+.+
T Consensus 14 ~e~vc~v~w~~~ee-i~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 14 SEKVCCVDWSSNEE-IYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ceeEEeecccccce-EEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 45677899998877 565555 555555543333222222211111111111111 223788888899888874
Q ss_pred ccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCce
Q 002564 297 FDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 376 (907)
Q Consensus 297 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 376 (907)
- ..+..+....|.+.+.+-+|+|||.-|+++|.||.|++|+-...-. ..
T Consensus 92 k-----~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR-St------------------------- 140 (737)
T KOG1524|consen 92 K-----SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR-ST------------------------- 140 (737)
T ss_pred c-----cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHH-HH-------------------------
Confidence 2 2256677789999999999999999999999999999998432110 00
Q ss_pred eEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 002564 377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG 456 (907)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~ 456 (907)
......+|.|++|.|+.+.++.+ ..|++.+=.++..
T Consensus 141 -------------------------------------------l~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n 176 (737)
T KOG1524|consen 141 -------------------------------------------VVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAAN 176 (737)
T ss_pred -------------------------------------------HhhcCceeEEEEECCCCCceEEe-cCCeEEEeecccc
Confidence 01234789999999998877664 5667777777766
Q ss_pred ccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCC
Q 002564 457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD 536 (907)
Q Consensus 457 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d 536 (907)
...-... +|.+-|.++.|++.+.++++||.|-..++||-....+...-.+..+|++++|.|+ ..+++++.+
T Consensus 177 ~k~i~Wk--------AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n 247 (737)
T KOG1524|consen 177 SKIIRWR--------AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN 247 (737)
T ss_pred cceeEEe--------ccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeee
Confidence 6666554 9999999999999999999999999999999877777667777799999999998 666666542
Q ss_pred CeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEE
Q 002564 537 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW 584 (907)
Q Consensus 537 g~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vw 584 (907)
+.+ --....+.|..++||+||..++.|+..|.+.+=
T Consensus 248 -t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 248 -TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred -eee-----------ecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 333 112345789999999999999999888877653
No 203
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.72 E-value=9.8e-16 Score=150.22 Aligned_cols=209 Identities=17% Similarity=0.235 Sum_probs=167.5
Q ss_pred eEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCC-------eEEEEEcCCCCCEEEEEEcCC-CCEEEEEecCC
Q 002564 132 HVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-------KKLYEFKGWGSSISSCVSSPA-LDVVAVGCSDG 203 (907)
Q Consensus 132 ~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~-------~~~~~~~~h~~~I~~l~~sp~-~~~la~g~~dg 203 (907)
.+.+|.+.+....|.|-.. +.||+||.|.+|.||.+..+ +++..+.+|...|--++|+|. .++|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD-~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFND-CVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCC-ceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 3446777788888988775 78999999999999998654 457788999999999999996 46899999999
Q ss_pred eEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeccccc-CeEEEEEecCCCE
Q 002564 204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN-AIISLHFFANEPV 282 (907)
Q Consensus 204 ~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~-~V~~l~~~~~~~~ 282 (907)
.|.+||+.+|+.+.++. |...|++++|+.||. ++++.+.|..|+|||.++++.+..-. +|.+ .-..+.|..++..
T Consensus 155 ~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~~g~i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD--HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLASGKI 230 (472)
T ss_pred eEEEEeccCCceeeecC--CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecc-cccCCCcceeEEeccCce
Confidence 99999999999999887 579999999999999 99999999999999999999998886 7765 4456778888884
Q ss_pred EEEEc---CCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEE-EeCCCCEEEEEceecc
Q 002564 283 LMSAS---ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS-AGQDRAFRLFSVIQDQ 347 (907)
Q Consensus 283 l~s~~---~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s-~~~dg~i~iwd~~~~~ 347 (907)
+-||- .++.+-+||-+.-... ..+..+ ..+..|.---|.+|...++. |-.|+.||.|.+..+.
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP-~~~~el-DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEP-IALQEL-DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeeccccccccceeccCcccccCc-ceeEEe-ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 44442 3788999976654432 233333 34556666667777777765 5579999999987665
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2.6e-15 Score=149.54 Aligned_cols=193 Identities=21% Similarity=0.266 Sum_probs=155.5
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCc
Q 002564 428 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD 507 (907)
Q Consensus 428 ~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 507 (907)
.+++++.+|..+++|..||.+++|+..+........ .|.+.|.++.|+|||++|++.+.| ..+||+..++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~--------~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI--------AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH--------hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc
Confidence 789999999999999999999999988777666654 899999999999999999999999 99999999996
Q ss_pred eeeeeec---CcceeEEEEeeCC-----CEEEEEeCCCeEEEEEccccee-----EEEeecCCCCeeeEEECCCCcEEEE
Q 002564 508 LKSRWEV---GCSLVKIVYHRVN-----GLLATVADDLVIRLFDVVALRM-----VRKFEGHTDRITDFCFSEDGKWLLS 574 (907)
Q Consensus 508 ~~~~~~~---~~~i~~~~~s~~~-----~~la~~~~dg~I~v~d~~~~~~-----~~~~~~h~~~I~~l~fspdg~~l~s 574 (907)
.+..... +.....+.|+.|+ .+.+....-+.|+.||+..++- .++...-...|++++.|+||++++.
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence 6665542 3567778888877 3344444556788877765432 1222223357999999999999999
Q ss_pred EeCCCcEEEEEcCCCceeeEeee-CC-ceEEEEECCCCceEEEEEecCCeEEEeeccc
Q 002564 575 SGMDGSLRIWDVILARQIDAIHV-DV-SITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (907)
Q Consensus 575 ~s~Dg~I~vwd~~~~~~~~~~~~-~~-~v~~l~~spdg~~lat~~~d~~~i~lW~~~~ 630 (907)
|+.||.|-|++..+-+++..++. |. -|+.+.|+||.+++++.+.+. .+.|-.+..
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~-~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN-EAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC-ceeEEEEee
Confidence 99999999999999888877754 33 399999999999999988887 477776543
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=8.5e-15 Score=143.03 Aligned_cols=310 Identities=14% Similarity=0.156 Sum_probs=209.9
Q ss_pred EcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecC--CeEEEEEccCCceEEEEeec
Q 002564 145 MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD--GKIHVHNVRYDEELVTFTHS 222 (907)
Q Consensus 145 ~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d--g~I~iwd~~~~~~~~~~~~~ 222 (907)
|..+. ..|.+|+.+| .++++.+...........+..|.-+-|+.. ++|..+.+ ..+++++.+.+..+..+...
T Consensus 13 ~Nqd~--~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp 87 (391)
T KOG2110|consen 13 FNQDS--TLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFP 87 (391)
T ss_pred eccce--eEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEecC
Confidence 45555 5678888888 788887765543333333556777778765 55555544 56999999999999888775
Q ss_pred CCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecc--cccCeEEEEEecCCCEEEEEc--CCCcEEEEEcc
Q 002564 223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA--HDNAIISLHFFANEPVLMSAS--ADNSIKMWIFD 298 (907)
Q Consensus 223 ~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~~--~d~~i~vw~~~ 298 (907)
.+|.++.++.+ .|+++-.+ .|.|||+++.++++++... +...+.++.+++++.+++.-+ ..|.|.+||..
T Consensus 88 --t~IL~VrmNr~---RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~ 161 (391)
T KOG2110|consen 88 --TSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI 161 (391)
T ss_pred --CceEEEEEccc---eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcc
Confidence 68999999765 35555443 4999999999999998844 566677777777777888644 36899999877
Q ss_pred CCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCC-EEEEEceecccceeechhhhhHHHhhccchhhhcccCcee
Q 002564 299 TTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA-FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 377 (907)
Q Consensus 299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 377 (907)
.- +....+..|.+++.+++|+++|.+|++++..|+ ||+|.+.+++...++..+..
T Consensus 162 nl----~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-------------------- 217 (391)
T KOG2110|consen 162 NL----QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-------------------- 217 (391)
T ss_pred cc----eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--------------------
Confidence 55 456677799999999999999999999999997 59999988877777644211
Q ss_pred EeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 002564 378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGI 457 (907)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~ 457 (907)
...|.+++|+|++++|++.++.++|++|.+....
T Consensus 218 ----------------------------------------------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 218 ----------------------------------------------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred ----------------------------------------------eeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 2678999999999999999999999999987654
Q ss_pred cceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCc--ceeEEEEeeCCCEEEEEeC
Q 002564 458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC--SLVKIVYHRVNGLLATVAD 535 (907)
Q Consensus 458 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~i~~~~~s~~~~~la~~~~ 535 (907)
... ... .....-..-.++ +.+.+---.+.-.+||....-....+...+ .+..+.-.+....+.+++.
T Consensus 252 ~~~-~~~-------p~~~~~~~~~~s---k~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~ 320 (391)
T KOG2110|consen 252 NNP-PES-------PTAGTSWFGKVS---KAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASY 320 (391)
T ss_pred cCC-CCC-------CCCCCcccchhh---hhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEc
Confidence 111 000 000000000000 000000001112235544332223333323 3333333357789999999
Q ss_pred CCeEEEEEccc
Q 002564 536 DLVIRLFDVVA 546 (907)
Q Consensus 536 dg~I~v~d~~~ 546 (907)
||.++.|.+.-
T Consensus 321 dG~~y~y~l~~ 331 (391)
T KOG2110|consen 321 DGHLYSYRLPP 331 (391)
T ss_pred CCeEEEEEcCC
Confidence 99999997753
No 206
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=2e-14 Score=137.77 Aligned_cols=227 Identities=16% Similarity=0.288 Sum_probs=166.9
Q ss_pred CCeEEEEEEeCCeEEEEEcCcceEEEecCCCC--cceEEEEEecCeEEEEEcCe--------EEEEeC--CeeEEEEccc
Q 002564 25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLP--KKIRALASYRDYTFAAYGNH--------IAVVKR--AHQVATWSRH 92 (907)
Q Consensus 25 ~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~--~~I~~la~~~~~~~~a~g~~--------I~vw~~--~~~~~~~~~h 92 (907)
.+..-.++..+.-++||+++-.+.......+. -.|.-|-|--+...++-|+. +.|||- .+++.++. -
T Consensus 15 QD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~-f 93 (346)
T KOG2111|consen 15 QDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELS-F 93 (346)
T ss_pred cCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEEE-e
Confidence 33333445557889999998644333222222 34444555555444444443 999994 33444433 4
Q ss_pred ccceEEEEeeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEE-EecCCcEEEEecCCC
Q 002564 93 SAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIV-GSQEGSLQLWNISTK 171 (907)
Q Consensus 93 ~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~-~s~dg~i~iwd~~~~ 171 (907)
..+|.++....++|+.+- ++.|.||...+.-.. +..+.......-.|++.|......||. |-.-|.|+|-|+...
T Consensus 94 ~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~---l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 94 NSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKL---LHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred ccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhh---eeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence 678999999999999997 889999999855442 444444333344777777764334443 556799999999766
Q ss_pred eE--EEEEcCCCCCEEEEEEcCCCCEEEEEecCCe-EEEEEccCCceEEEEeecC-CCCEEEEEEecCCCCEEEEEeCCC
Q 002564 172 KK--LYEFKGWGSSISSCVSSPALDVVAVGCSDGK-IHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSG 247 (907)
Q Consensus 172 ~~--~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~-I~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~dg~~~l~sg~~dg 247 (907)
+. ...+..|.+.|.|++.+.+|.++|+++..|+ |+|||..+|+.+..++.+. ...|++++|||++. +||+++..|
T Consensus 170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s-~LavsSdKg 248 (346)
T KOG2111|consen 170 KPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS-WLAVSSDKG 248 (346)
T ss_pred CcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc-EEEEEcCCC
Confidence 65 5788999999999999999999999999987 7999999999999998653 35899999999999 999999999
Q ss_pred cEEEEECCCc
Q 002564 248 VISIWNLEKR 257 (907)
Q Consensus 248 ~I~iwd~~~~ 257 (907)
+|.|+.++..
T Consensus 249 TlHiF~l~~~ 258 (346)
T KOG2111|consen 249 TLHIFSLRDT 258 (346)
T ss_pred eEEEEEeecC
Confidence 9999998764
No 207
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.4e-15 Score=148.46 Aligned_cols=307 Identities=14% Similarity=0.138 Sum_probs=219.4
Q ss_pred eEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecC------CCeEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCe
Q 002564 132 HVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS------TKKKLYEFK-GWGSSISSCVSSPALDVVAVGCSDGK 204 (907)
Q Consensus 132 ~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~------~~~~~~~~~-~h~~~I~~l~~sp~~~~la~g~~dg~ 204 (907)
.+..|.+.+....|+.++ +.|++|+.|..+++|++. +.+++.... .|.+.|.|++|......|.+|..+++
T Consensus 51 D~~~H~GCiNAlqFS~N~--~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHND--RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhccccceeeeccCC--eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 344577788888899998 899999999999999985 346666554 45689999999999999999999999
Q ss_pred EEEEEccCCceEEEEeec-CCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCce-eeeeee-cccccCeEEEEEecCCC
Q 002564 205 IHVHNVRYDEELVTFTHS-MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIR-EAHDNAIISLHFFANEP 281 (907)
Q Consensus 205 I~iwd~~~~~~~~~~~~~-~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~-~~~~~~-~~h~~~V~~l~~~~~~~ 281 (907)
|...|+++.+.+..+... ..+.|+.+..+|-.. .+++.+.+|.|.+||.+... ....+. ........++.|+|..+
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 999999999999888754 246899999999876 89999999999999998764 222221 13456778999999776
Q ss_pred -EEEEEcCCCcEEEEEccCCCCCcceeEeccCC---CCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhh
Q 002564 282 -VLMSASADNSIKMWIFDTTDGDPRLLRFRSGH---SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357 (907)
Q Consensus 282 -~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h---~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 357 (907)
+|++.+..+-+.+||........-...-..+- ...-.++.|+|+|..+++.-....-.+||+.+..+...
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~------ 281 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVL------ 281 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeE------
Confidence 66778888899999987654211000011111 22236788999999998877666667777655332111
Q ss_pred hHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCC
Q 002564 358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN 437 (907)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 437 (907)
.++..+. +. .+...+.+++|-.+-.
T Consensus 282 --------------------k~D~N~~---------------GY--------------------~N~~T~KS~~F~~D~~ 306 (609)
T KOG4227|consen 282 --------------------KSDHNPN---------------GY--------------------CNIKTIKSMTFIDDYT 306 (609)
T ss_pred --------------------eccCCCC---------------cc--------------------eeeeeeeeeeeeccee
Confidence 0000000 00 0113466677765544
Q ss_pred EEEEEeCCCcEEEEeCCCCcccee---------------eeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564 438 FAVLGTAGGWIERFNLQSGISRGS---------------YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (907)
Q Consensus 438 ~l~~g~~dg~i~i~d~~~~~~~~~---------------~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 502 (907)
+++|+.+-.|++|.+.......- +.......+.+|..-+..+.|+|...+|++.|....+++|.
T Consensus 307 -v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 307 -VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred -eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 88898888999998754322211 11112224579999999999999999999999999999997
Q ss_pred C
Q 002564 503 F 503 (907)
Q Consensus 503 ~ 503 (907)
-
T Consensus 386 ~ 386 (609)
T KOG4227|consen 386 D 386 (609)
T ss_pred c
Confidence 4
No 208
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.71 E-value=1.6e-15 Score=168.82 Aligned_cols=267 Identities=17% Similarity=0.211 Sum_probs=184.4
Q ss_pred Ee-CCeeEEEEcccccceEEEEe---eCCEEEEEecCCcEEEEecCCCCcccc---ceeeEecCCCcccEEEEcCCCCCC
Q 002564 80 VK-RAHQVATWSRHSAKVNLLLL---FGEHILSIDIDGNMFIWAFKGIEENLA---PVGHVKLDDKFTPTCIMHPDTYLN 152 (907)
Q Consensus 80 w~-~~~~~~~~~~h~~~V~~l~~---~g~~l~s~~~dg~v~vWd~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~ 152 (907)
|+ +|..++++..|+..|..++. .+.+++|||.||+|++||...-..... ...+............+-+.+ +
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~--~ 1111 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG--D 1111 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC--C
Confidence 55 46778889999999998885 468999999999999999876443211 122222233444445566666 7
Q ss_pred EEEEEecCCcEEEEecCCC--e-----EEEEEcCC-CCCEEE-EEEcCC-CC-EEEEEecCCeEEEEEccCCceEEEEee
Q 002564 153 KVIVGSQEGSLQLWNISTK--K-----KLYEFKGW-GSSISS-CVSSPA-LD-VVAVGCSDGKIHVHNVRYDEELVTFTH 221 (907)
Q Consensus 153 ~l~~~s~dg~i~iwd~~~~--~-----~~~~~~~h-~~~I~~-l~~sp~-~~-~la~g~~dg~I~iwd~~~~~~~~~~~~ 221 (907)
.+|+++.||.|++.++.-. + +....+.+ .+.+.. -+|... +. .|+.+...+.|..||++......+++.
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 8999999999999988652 1 11112222 233333 344332 33 788888889999999998776555542
Q ss_pred c-CCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCC---EEEEEc--CCCcEEEE
Q 002564 222 S-MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP---VLMSAS--ADNSIKMW 295 (907)
Q Consensus 222 ~-~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~---~l~s~~--~d~~i~vw 295 (907)
. ..|.|++++.+|.+. ++++|+..|.+.+||++-+.++......+..++..+..+|-.+ ..++++ ..+.|.+|
T Consensus 1192 ~~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred CccccceeEEEecCCce-EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 2 247899999999999 9999999999999999999999888877788899888877433 444444 47889999
Q ss_pred EccCCCCCcceeEe---------cc------CCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccc
Q 002564 296 IFDTTDGDPRLLRF---------RS------GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS 349 (907)
Q Consensus 296 ~~~~~~~~~~~~~~---------~~------~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~ 349 (907)
++..+.....+... .. .+.-......+...+..+++|+.|..||.||.......
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 98876432211111 00 11122233334445668899999999999998765443
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.71 E-value=5.3e-15 Score=141.53 Aligned_cols=165 Identities=12% Similarity=0.151 Sum_probs=138.1
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCc---eEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEE
Q 002564 176 EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE---ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW 252 (907)
Q Consensus 176 ~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~---~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iw 252 (907)
.+.-...+|+|.+|++|+..+|++..+..|.||...... ...++..| ...|+.+.|+|... .+++|+.|..-++|
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~H-d~~vtgvdWap~sn-rIvtcs~drnayVw 82 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEH-DKIVTGVDWAPKSN-RIVTCSHDRNAYVW 82 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhh-CcceeEEeecCCCC-ceeEccCCCCcccc
Confidence 344446799999999999999999999999999987554 55666665 88999999999997 79999999999999
Q ss_pred EC-CCc--eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEE
Q 002564 253 NL-EKR--RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI 329 (907)
Q Consensus 253 d~-~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l 329 (907)
.. ..+ +..-.+. .+....+++.|+|.++.+++|+..+.|.||-++..+.-+........+...|+++.|+|++-++
T Consensus 83 ~~~~~~~WkptlvLl-RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl 161 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLL-RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL 161 (361)
T ss_pred ccCCCCeeccceeEE-EeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence 98 444 3333444 5889999999999999999999999999998887665444444455677889999999999999
Q ss_pred EEEeCCCCEEEEEc
Q 002564 330 LSAGQDRAFRLFSV 343 (907)
Q Consensus 330 ~s~~~dg~i~iwd~ 343 (907)
+.|+.|+..|+|+.
T Consensus 162 aaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSA 175 (361)
T ss_pred cccccCcceeEEEE
Confidence 99999999999985
No 210
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=3.9e-17 Score=174.03 Aligned_cols=284 Identities=17% Similarity=0.256 Sum_probs=218.3
Q ss_pred eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCC
Q 002564 258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337 (907)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~ 337 (907)
+.+..+. +|.+.|+|+.|...|.++++|+.|..++||..++. .++....||.+.++.++.+.+...+++++.|..
T Consensus 181 k~ikrLl-gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~----~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 181 KNIKRLL-GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA----RCLASCRGHSGDITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred HHHHHHH-hhhhheeeeeeccccceEeecCccceeeeeeccch----hhhccCCCCccccchhccchhhhhhhhcccCce
Confidence 4455565 89999999999999999999999999999986654 678888999999999999999899999999999
Q ss_pred EEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceee
Q 002564 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 417 (907)
Q Consensus 338 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~ 417 (907)
|++|.+..+..+..+
T Consensus 256 IrvWrl~~~~pvsvL----------------------------------------------------------------- 270 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVL----------------------------------------------------------------- 270 (1113)
T ss_pred EEEEecCCCchHHHH-----------------------------------------------------------------
Confidence 999998776544332
Q ss_pred ecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCe
Q 002564 418 RPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD 497 (907)
Q Consensus 418 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 497 (907)
.+|.+.|++++|+|-. +.+.||++++||..- ..+. +. +.........-+.++.+...+..++|++.|+.
T Consensus 271 ---rghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~-y~--prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e 339 (1113)
T KOG0644|consen 271 ---RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRI-YV--PRPLKFTEKDLVDSILFENNGDRFLTGSRDGE 339 (1113)
T ss_pred ---hccccceeeeccCccc----cCCCCCceEeccccc-cccc-cC--CCCCCcccccceeeeeccccccccccccCCcc
Confidence 2577999999999976 667899999999871 1111 11 01111123356777888888889999999999
Q ss_pred EEEEECCCCceeeeeecCcceeEEEEeeC-CCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCc-EEEEE
Q 002564 498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRV-NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSS 575 (907)
Q Consensus 498 i~iwd~~~~~~~~~~~~~~~i~~~~~s~~-~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~-~l~s~ 575 (907)
-..|.+.-..... ..+.-+..+.+ +.+.+++-.+..+.+|++.+|.+.+.+.+|...+..+.++|-+. ...++
T Consensus 340 a~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 340 ARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred cccchhhHhhhhc-----cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhc
Confidence 9888765321110 01111111112 24566666778899999999999999999999999999999664 45589
Q ss_pred eCCCcEEEEEcCCCceeeEee-eCCceEEEEECCCCceEEEEEecCCeEEEeec
Q 002564 576 GMDGSLRIWDVILARQIDAIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (907)
Q Consensus 576 s~Dg~I~vwd~~~~~~~~~~~-~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~ 628 (907)
+.||...|||+-.|.+++.+. +|..+..-.||+||..++....-| .++|...
T Consensus 415 g~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hg-ql~i~g~ 467 (1113)
T KOG0644|consen 415 GYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHG-QLYILGT 467 (1113)
T ss_pred cCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCC-ceEEecc
Confidence 999999999999999887765 466688999999999988876666 5777753
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.70 E-value=2.2e-15 Score=167.87 Aligned_cols=342 Identities=18% Similarity=0.202 Sum_probs=222.9
Q ss_pred EEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc-------eeeeeeecccccCeEEEEEecCC
Q 002564 208 HNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-------RLQSVIREAHDNAIISLHFFANE 280 (907)
Q Consensus 208 wd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~-------~~~~~~~~~h~~~V~~l~~~~~~ 280 (907)
|+.+ |..+..+..| ...+..++.+++...++++|+.||+|++||+..- +...++. ...+.+.++...+++
T Consensus 1034 W~p~-G~lVAhL~Eh-s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys-~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEH-SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS-PEGSRVEKVTMCGNG 1110 (1431)
T ss_pred CCcc-ceEeehhhhc-cccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe-ccCCceEEEEeccCC
Confidence 6654 6677777665 6777788888776449999999999999998642 2222222 246789999999999
Q ss_pred CEEEEEcCCCcEEEEEccCCCCCc---ceeEeccCCC-CCCeEE-EEec-CCC-EEEEEeCCCCEEEEEceecccceeec
Q 002564 281 PVLMSASADNSIKMWIFDTTDGDP---RLLRFRSGHS-APPLCI-RFYA-NGR-HILSAGQDRAFRLFSVIQDQQSRELS 353 (907)
Q Consensus 281 ~~l~s~~~d~~i~vw~~~~~~~~~---~~~~~~~~h~-~~v~~i-~~~~-~g~-~l~s~~~dg~i~iwd~~~~~~~~~~~ 353 (907)
..+|+++.||.|++.+++...... ...+....+. +.+.++ +|.. .+. .++.+...+.+..||++.......+.
T Consensus 1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh
Confidence 999999999999999988732221 1122222222 223333 3332 333 67788888899999987644322211
Q ss_pred hhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEc
Q 002564 354 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS 433 (907)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s 433 (907)
. ....+.|++++++
T Consensus 1191 ~------------------------------------------------------------------~~~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1191 N------------------------------------------------------------------QLRHGLVTSIVID 1204 (1431)
T ss_pred c------------------------------------------------------------------CccccceeEEEec
Confidence 0 0123789999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC---CEEEEEe--cCCeEEEEECCCCce
Q 002564 434 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN---TLMISAG--YHGDIKVWDFKGRDL 508 (907)
Q Consensus 434 ~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~---~~l~s~~--~dg~i~iwd~~~~~~ 508 (907)
|.++++++|++.|.+.+||++-+..+.... .++..++..+..+|.. ...++++ ..+.|.+|++.+|..
T Consensus 1205 p~~~WlviGts~G~l~lWDLRF~~~i~sw~-------~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1205 PWCNWLVIGTSRGQLVLWDLRFRVPILSWE-------HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred CCceEEEEecCCceEEEEEeecCceeeccc-------CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 999999999999999999999998888876 4666888888887743 3555554 468899999999866
Q ss_pred eeeeecCc--------------------ceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeE-EEeecCCCCeeeEEECC
Q 002564 509 KSRWEVGC--------------------SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV-RKFEGHTDRITDFCFSE 567 (907)
Q Consensus 509 ~~~~~~~~--------------------~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~-~~~~~h~~~I~~l~fsp 567 (907)
...+-... .....++...+.++.+|+.|..|+.||....+.. ....|..........+.
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~ 1357 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESY 1357 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhc
Confidence 55543220 1122333344678999999999999999766544 23333333333333332
Q ss_pred CCcEEEEEeC--CC------------cEE-EEEcCCCceeeEeeeCCceEEEEECCC-CceEEEEEecCCeEEEee
Q 002564 568 DGKWLLSSGM--DG------------SLR-IWDVILARQIDAIHVDVSITALSLSPN-MDVLATAHVDQNGVYLWV 627 (907)
Q Consensus 568 dg~~l~s~s~--Dg------------~I~-vwd~~~~~~~~~~~~~~~v~~l~~spd-g~~lat~~~d~~~i~lW~ 627 (907)
+ .-++.++. |- ..+ .=.+..+.......+|.+|+++++... ..+|++++.|| .|+||.
T Consensus 1358 ~-~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG-~IkiWk 1431 (1431)
T KOG1240|consen 1358 D-LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDG-VIKIWK 1431 (1431)
T ss_pred c-ccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCC-eeeecC
Confidence 2 12222221 10 000 001112222233345777999988754 46888999999 599994
No 212
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.70 E-value=3.7e-15 Score=162.13 Aligned_cols=274 Identities=18% Similarity=0.201 Sum_probs=196.9
Q ss_pred CeEEEEEccCC-ceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCcee-----eeeeecccccCeEEEEE
Q 002564 203 GKIHVHNVRYD-EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL-----QSVIREAHDNAIISLHF 276 (907)
Q Consensus 203 g~I~iwd~~~~-~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~-----~~~~~~~h~~~V~~l~~ 276 (907)
+.+.+|+++.. ..-..+.. ...|+++.|+|....+++.|..+|.|.+||+..+.. +......|..+++.+.|
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~--~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLES--PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCCCceEEEec--CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 47999999876 33333333 589999999999888999999999999999988755 22333578999999999
Q ss_pred ecCCCE--EEEEcCCCcEEEEEccCCCCCcc--eeEec------cCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEcee
Q 002564 277 FANEPV--LMSASADNSIKMWIFDTTDGDPR--LLRFR------SGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQ 345 (907)
Q Consensus 277 ~~~~~~--l~s~~~d~~i~vw~~~~~~~~~~--~~~~~------~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~ 345 (907)
..+..- +++++.||.|..|+++.-..... +.... ..-...++++.|.+ +...++.|+.+|.|..-+-..
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 886654 99999999999998775432111 11111 12235788999998 677899999999876533211
Q ss_pred cccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCC
Q 002564 346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 425 (907)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~ 425 (907)
.+...+. + .........|.+
T Consensus 380 ~~~~~~~---------------------------------------------------~---------~~~~~~~~~h~g 399 (555)
T KOG1587|consen 380 YTPAPEV---------------------------------------------------S---------YKGHSTFITHIG 399 (555)
T ss_pred Ccccccc---------------------------------------------------c---------ccccccccccCc
Confidence 1100000 0 011112234568
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCccceeeeccccccccCcCCcEEEEEEcCCC-CEEEEEecCCeEEEEEC
Q 002564 426 AVKACTISACGNFAVLGTAGGWIERFNLQ-SGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDF 503 (907)
Q Consensus 426 ~v~~~~~s~~g~~l~~g~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~ 503 (907)
.+.++.++|-+..++..+.|.++++|... ...++..+. .+...|++++|||.. ..++++..||.+.+||+
T Consensus 400 ~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~--------~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD--------SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDL 471 (555)
T ss_pred ceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh--------hccceeeeeEEcCcCceEEEEEcCCCceehhhh
Confidence 99999999998777666669999999987 555555443 677779999999987 46677778999999999
Q ss_pred CCCc--eeeeeec-CcceeEEEEeeCCCEEEEEeCCCeEEEEEccc
Q 002564 504 KGRD--LKSRWEV-GCSLVKIVYHRVNGLLATVADDLVIRLFDVVA 546 (907)
Q Consensus 504 ~~~~--~~~~~~~-~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~ 546 (907)
.... ++.+... ....+.+.|+++|+.|++|...|.+++|++..
T Consensus 472 l~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 472 LQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred hccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 7543 3333322 35667778888899999999999999999853
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.6e-14 Score=140.31 Aligned_cols=197 Identities=18% Similarity=0.275 Sum_probs=143.6
Q ss_pred CCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcC-CCCCEEEEEEcCCC-CEEEEEecCCeEEEEEccCC-
Q 002564 137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG-WGSSISSCVSSPAL-DVVAVGCSDGKIHVHNVRYD- 213 (907)
Q Consensus 137 ~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-h~~~I~~l~~sp~~-~~la~g~~dg~I~iwd~~~~- 213 (907)
.......++|+.. ..++++..|-.|++||-++ ++...++. ....|+|++|-|.+ ..|++|+.. -|.+|....-
T Consensus 98 ~~dlr~~aWhqH~--~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHI--IAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhh--hhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccc
Confidence 3344567788866 7899999999999999766 55555543 36789999999964 588888875 5899986521
Q ss_pred ---c--------eEEEEeecCCCCEEEEEEecCCCCEEEEEe-CCCcEEEEECCCceeeeeeecccccCeEEEEEecCCC
Q 002564 214 ---E--------ELVTFTHSMRGAVTALAFSSDGQPLLASGA-SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP 281 (907)
Q Consensus 214 ---~--------~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 281 (907)
. ....+......+|++|.|.+||. .+++++ .+..|.|||..++..+.... ...+.++-+.|+||+.
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKWSPDGD 251 (445)
T ss_pred ccccccccccccchhheeCCCCceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEEEcCCCC
Confidence 1 11222222236899999999999 777776 67899999999998877765 4567889999999999
Q ss_pred EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEce
Q 002564 282 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (907)
Q Consensus 282 ~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~ 344 (907)
+|+++.-|+..++|+.... +...+...+ .+.|...+|+|+|++|+.+... .-+++++.
T Consensus 252 ~lfaAt~davfrlw~e~q~---wt~erw~lg-sgrvqtacWspcGsfLLf~~sg-sp~lysl~ 309 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQS---WTKERWILG-SGRVQTACWSPCGSFLLFACSG-SPRLYSLT 309 (445)
T ss_pred EEEEecccceeeeehhccc---ceecceecc-CCceeeeeecCCCCEEEEEEcC-CceEEEEe
Confidence 9999999999999954322 122222222 3489999999999987765432 33455543
No 214
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3.1e-16 Score=157.92 Aligned_cols=317 Identities=14% Similarity=0.166 Sum_probs=235.0
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCC-CCEEEEEeCCCcEEE
Q 002564 173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG-QPLLASGASSGVISI 251 (907)
Q Consensus 173 ~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg-~~~l~sg~~dg~I~i 251 (907)
+...+..|.+.|..+.|...|..|++|+.|..|.+||...++....|..+|...|....|-|.. ..-+++++.||.+++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 4466889999999999999999999999999999999999999999999888889888888853 235888999999998
Q ss_pred EECCCce-ee--eeeecccccCeEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCC---CCeEEEEec
Q 002564 252 WNLEKRR-LQ--SVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA---PPLCIRFYA 324 (907)
Q Consensus 252 wd~~~~~-~~--~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~---~v~~i~~~~ 324 (907)
=.+.... +. ..+ ..|.++|..++.-|+.+ -|.+++.|+.+.-.|+.......... ....+.. ....++..|
T Consensus 214 s~i~~t~~~e~t~rl-~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 214 SEILETGYVENTKRL-APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeccccceecceec-ccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccceeeeeEecCC
Confidence 8765432 22 233 37999999999999875 68899999999988887664433333 3334444 567888888
Q ss_pred -CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEE
Q 002564 325 -NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (907)
Q Consensus 325 -~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (907)
+...+++++.|..+++||.+.-.....-. ++..
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~---------------------~~~~------------------------- 325 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNG---------------------VLDK------------------------- 325 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccc---------------------hhhh-------------------------
Confidence 55589999999999999976432211000 0000
Q ss_pred EEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccce--eee---ccccccccCcCC--c
Q 002564 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG--SYL---DMSERSNYAHNG--E 476 (907)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~--~~~---~~~~~~~~~h~~--~ 476 (907)
.+..+... ..+..|++++++.++.-+++.+.|-.|++|+-.-+.-.. ... .......++|.. .
T Consensus 326 -------f~p~hl~~---d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T 395 (559)
T KOG1334|consen 326 -------FCPHHLVE---DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT 395 (559)
T ss_pred -------cCCccccc---cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccc
Confidence 00011111 234789999999999999999999999999643322100 000 000111357754 4
Q ss_pred EEEEEE-cCCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccc
Q 002564 477 VVGVAC-DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVAL 547 (907)
Q Consensus 477 v~~l~~-s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~ 547 (907)
|.++-| -|...++++|+.-|.|.||+-+++++++.++.. .-|+|+.-||--..||+.+-|..|+||-..+.
T Consensus 396 VKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 396 VKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred cceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 677765 677899999999999999999999999888665 57889999999999999999999999976443
No 215
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.9e-16 Score=159.49 Aligned_cols=306 Identities=14% Similarity=0.215 Sum_probs=230.1
Q ss_pred EEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecC--CCEEEEEcCCCcEEE
Q 002564 217 VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKM 294 (907)
Q Consensus 217 ~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~d~~i~v 294 (907)
..+.. |.+.|..+.|...|. .+++|+.|..|.+||...++....+..+|...|....|.|. .+.+++++.||.+++
T Consensus 136 ~kL~~-H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 136 KKLNK-HKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hcccC-CCCccceeeecccCc-eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 33444 489999999999999 99999999999999999999999998899999999999884 458999999999998
Q ss_pred EEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhccc
Q 002564 295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 373 (907)
Q Consensus 295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (907)
=.+..... ..-...+..|.++|..++..| ....|++++.|+.+.-+|++.+.....+.
T Consensus 214 s~i~~t~~-~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-------------------- 272 (559)
T KOG1334|consen 214 SEILETGY-VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-------------------- 272 (559)
T ss_pred eeeccccc-eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee--------------------
Confidence 87654432 222455668999999999999 45678899999999999987665433321
Q ss_pred CceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCC-EEEEEeCCCcEEEEe
Q 002564 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN-FAVLGTAGGWIERFN 452 (907)
Q Consensus 374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~i~d 452 (907)
|...+.. ..-....+++.|... .+++|+.+-.+++||
T Consensus 273 ---------------------cr~~~~~---------------------~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD 310 (559)
T KOG1334|consen 273 ---------------------CREADEK---------------------ERVGLYTIAVDPRNTNEFAVGGSDQFARVYD 310 (559)
T ss_pred ---------------------eeccCCc---------------------cceeeeeEecCCCCccccccCChhhhhhhhc
Confidence 1111000 002456677777664 789999999999999
Q ss_pred CCCCccc------eeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCC--C----------ceeee-ee
Q 002564 453 LQSGISR------GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG--R----------DLKSR-WE 513 (907)
Q Consensus 453 ~~~~~~~------~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~----------~~~~~-~~ 513 (907)
...-... ..+.... ........|+|++++.++.-+.++-.|-.|+++.-.- | ..... ++
T Consensus 311 ~R~~~~e~~n~~~~~f~p~h--l~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYK 388 (559)
T KOG1334|consen 311 QRRIDKEENNGVLDKFCPHH--LVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYK 388 (559)
T ss_pred ccchhhccccchhhhcCCcc--ccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhc
Confidence 7653322 2222100 0012345799999998887777777888899985332 2 11222 33
Q ss_pred cC---cceeEEE-EeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCC
Q 002564 514 VG---CSLVKIV-YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 589 (907)
Q Consensus 514 ~~---~~i~~~~-~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~ 589 (907)
.+ ..|..+- |-|...++++|++-|.|.||+-.++++++-+.|...-|++|.-+|--..||+++-|..|+||--.+.
T Consensus 389 GHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 389 GHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred ccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 33 3455554 5678899999999999999999999999999998889999999999999999999999999986444
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.8e-14 Score=140.01 Aligned_cols=304 Identities=18% Similarity=0.277 Sum_probs=196.7
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc---
Q 002564 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR--- 257 (907)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~--- 257 (907)
...+..++|++.-..+|++..|-.|++||-.. +....++......|+|++|.|.+..-+++|+.. -|.+|.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence 34577889999877889999999999999765 666667666677899999999987788888864 5999986532
Q ss_pred -eee--------eeee-cccccCeEEEEEecCCCEEEEEcC-CCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCC
Q 002564 258 -RLQ--------SVIR-EAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 326 (907)
Q Consensus 258 -~~~--------~~~~-~~h~~~V~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g 326 (907)
+.+ ..++ .+| .+|++++|.+||..+++++. |..|.+||.+++...+.. ....+.+.-+.|+|||
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~----~~glgg~slLkwSPdg 250 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI----PKGLGGFSLLKWSPDG 250 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc----ccCCCceeeEEEcCCC
Confidence 111 1112 234 68999999999999999886 678999999887553322 2344678899999999
Q ss_pred CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEE
Q 002564 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 406 (907)
Q Consensus 327 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~ 406 (907)
.+|+.+.-|+..++|+.... |.
T Consensus 251 d~lfaAt~davfrlw~e~q~----------------------------------------------------------wt 272 (445)
T KOG2139|consen 251 DVLFAATCDAVFRLWQENQS----------------------------------------------------------WT 272 (445)
T ss_pred CEEEEecccceeeeehhccc----------------------------------------------------------ce
Confidence 99999999999999964321 11
Q ss_pred eeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC
Q 002564 407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486 (907)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 486 (907)
.+...+ .++.+...+|+|+|++++..... .-.+|. +.|+...
T Consensus 273 ~erw~l----------gsgrvqtacWspcGsfLLf~~sg-sp~lys---------------------------l~f~~~~ 314 (445)
T KOG2139|consen 273 KERWIL----------GSGRVQTACWSPCGSFLLFACSG-SPRLYS---------------------------LTFDGED 314 (445)
T ss_pred ecceec----------cCCceeeeeecCCCCEEEEEEcC-CceEEE---------------------------EeecCCC
Confidence 111111 12588999999999998776432 222333 3332211
Q ss_pred CEEE-EEecCCeEEEEECCCCceee-eeecCcceeEEEEeeCCCEEEEEeCCC--------eEEEEEcccceeEEEe-ec
Q 002564 487 TLMI-SAGYHGDIKVWDFKGRDLKS-RWEVGCSLVKIVYHRVNGLLATVADDL--------VIRLFDVVALRMVRKF-EG 555 (907)
Q Consensus 487 ~~l~-s~~~dg~i~iwd~~~~~~~~-~~~~~~~i~~~~~s~~~~~la~~~~dg--------~I~v~d~~~~~~~~~~-~~ 555 (907)
..+. .++.-..+-+-|+..-.... .-...+++.+++|.|.|.+||+....+ .|.+||....-.+.-. -|
T Consensus 315 ~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg 394 (445)
T KOG2139|consen 315 SVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCG 394 (445)
T ss_pred ccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecc
Confidence 1111 12222222233332111000 111237889999999999999986644 3666776543332221 11
Q ss_pred C--CCCeeeEEECC---CCcEEEEEeCCCcEEEEEcC
Q 002564 556 H--TDRITDFCFSE---DGKWLLSSGMDGSLRIWDVI 587 (907)
Q Consensus 556 h--~~~I~~l~fsp---dg~~l~s~s~Dg~I~vwd~~ 587 (907)
- ...-..|+|+| +|++|..+=.-|.+.-|++.
T Consensus 395 ~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 395 MIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 1 11244566766 56677766667777777653
No 217
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.1e-15 Score=152.11 Aligned_cols=203 Identities=22% Similarity=0.247 Sum_probs=154.4
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCccee
Q 002564 228 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL 307 (907)
Q Consensus 228 ~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 307 (907)
.+++|+.+|. .|++|+.||++|||+..+...+.... .|...|.++.|+|||+.|++.+.| ..+||+.+.+..-. .
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~-~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a--~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEI-AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA--R 222 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhH-hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh--h
Confidence 7899999998 99999999999999988887777776 799999999999999999999999 99999887762211 1
Q ss_pred EeccCCCCCCeEEEEecCC---C--EEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeec
Q 002564 308 RFRSGHSAPPLCIRFYANG---R--HILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382 (907)
Q Consensus 308 ~~~~~h~~~v~~i~~~~~g---~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (907)
............++|..|+ . .++....-+.++.|++........+.
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~----------------------------- 273 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR----------------------------- 273 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccc-----------------------------
Confidence 1112334456778888766 2 22233344566666653222110000
Q ss_pred ccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceee
Q 002564 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (907)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~ 462 (907)
..........++++++|+||+++++|+.+|.|.+|+..+.+.....
T Consensus 274 ----------------------------------~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v 319 (398)
T KOG0771|consen 274 ----------------------------------LRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV 319 (398)
T ss_pred ----------------------------------hhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee
Confidence 0000112268999999999999999999999999999998888877
Q ss_pred eccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 002564 463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG 505 (907)
Q Consensus 463 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 505 (907)
+ .+|...|+++.|+|+.+++++.+.|....+..+.-
T Consensus 320 k-------~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 320 K-------EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred h-------hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 6 69999999999999999999999988888876653
No 218
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.67 E-value=3.3e-13 Score=149.21 Aligned_cols=273 Identities=15% Similarity=0.190 Sum_probs=195.1
Q ss_pred CcceEEEEEecCeEEEEEcCeEEEEeCCee--------EEEEcccccceEEEE-eeCCEEEEEecCCcEEEEecCCCCcc
Q 002564 56 PKKIRALASYRDYTFAAYGNHIAVVKRAHQ--------VATWSRHSAKVNLLL-LFGEHILSIDIDGNMFIWAFKGIEEN 126 (907)
Q Consensus 56 ~~~I~~la~~~~~~~~a~g~~I~vw~~~~~--------~~~~~~h~~~V~~l~-~~g~~l~s~~~dg~v~vWd~~~~~~~ 126 (907)
-++..+.++-.++.+++.|..|.+||.... ..-+..| .+.... ..+..++++..-+.+.+=+......
T Consensus 7 ~~~l~~~~~~~~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H--~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~~- 83 (967)
T KOG0974|consen 7 LGPLNLPQLVSDYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVH--RGEGKVKLLSGKIVTCAKSDEVYVKEASNQII- 83 (967)
T ss_pred cccccchhhccceeeecCCCceEEeeCCchhHhhhhhhhcccccc--cccccceeccceEEEEEeecceeecchhhhhh-
Confidence 345555665558888888999999985332 1114455 111111 2566777777655544333222111
Q ss_pred ccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCC----EEEEEEcCCCCEEEEEecC
Q 002564 127 LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS----ISSCVSSPALDVVAVGCSD 202 (907)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~----I~~l~~sp~~~~la~g~~d 202 (907)
.. -...+..+-+.... .++++++.++.+.+||...+............ ..-+.++++.-++++|+.-
T Consensus 84 ----~~---~s~wi~g~~l~~e~--k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~ 154 (967)
T KOG0974|consen 84 ----ER---FSDWIFGAKLFEEN--KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVF 154 (967)
T ss_pred ----hh---ccccccccchhhhc--ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccc
Confidence 11 12222234445555 68999999999999999888777766543221 1223456777799999999
Q ss_pred CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCE
Q 002564 203 GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV 282 (907)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 282 (907)
+.|.+|+....+.-..+.+ |.+.|.++.|+-||+ ++++.+.|.++++|++++.+.....--+|+..|..+.|+|+ .
T Consensus 155 ~~iivW~~~~dn~p~~l~G-HeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~ 230 (967)
T KOG0974|consen 155 GEIIVWKPHEDNKPIRLKG-HEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--R 230 (967)
T ss_pred ccEEEEeccccCCcceecc-cCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--e
Confidence 9999999984443333444 589999999999999 99999999999999999998877333489999999999999 8
Q ss_pred EEEEcCCCcEEEEEccCCCCCcceeEeccCCCC-CCeEEEEecCCCEEEEEeCCCCEEEEEceecccc
Q 002564 283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA-PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS 349 (907)
Q Consensus 283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~-~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~ 349 (907)
+++++.|.+.++|+.+.. .+..+.+|.. .+..+...++...+++++.|+.+++|++......
T Consensus 231 i~t~gedctcrvW~~~~~-----~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e 293 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGVNGT-----QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLE 293 (967)
T ss_pred eEEeccceEEEEEecccc-----eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccc
Confidence 999999999999965543 3446667754 6889999998889999999999999998765443
No 219
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=2.8e-14 Score=134.51 Aligned_cols=290 Identities=17% Similarity=0.247 Sum_probs=201.3
Q ss_pred CCeEEEEEcCCCCCEEEEEEcC---CCCEEEEEec----CCeEEEEEcc--CCceEEEEeecCCCCEEEEEEecCCC---
Q 002564 170 TKKKLYEFKGWGSSISSCVSSP---ALDVVAVGCS----DGKIHVHNVR--YDEELVTFTHSMRGAVTALAFSSDGQ--- 237 (907)
Q Consensus 170 ~~~~~~~~~~h~~~I~~l~~sp---~~~~la~g~~----dg~I~iwd~~--~~~~~~~~~~~~~~~v~~l~fs~dg~--- 237 (907)
.++.++.+.. .-++.++.|+. ...+||.|+- .+.|.|..+. +++.+..-...|.-+++.+.|.|+..
T Consensus 34 r~~eiy~Y~a-p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~ 112 (364)
T KOG0290|consen 34 RRKEIYTYNA-PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVY 112 (364)
T ss_pred ccceEEEecC-CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccC
Confidence 3455666665 46778888883 2348888874 3667776554 45555544455678999999999862
Q ss_pred -CEEEEEeCCCcEEEEECCCc--ee--eeee----ecccccCeEEEEEec-CCCEEEEEcCCCcEEEEEccCCCCCccee
Q 002564 238 -PLLASGASSGVISIWNLEKR--RL--QSVI----REAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLL 307 (907)
Q Consensus 238 -~~l~sg~~dg~I~iwd~~~~--~~--~~~~----~~~h~~~V~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 307 (907)
.+||+++ ..+++|.+... +. ...+ ...+..++++..|.. +-+++.+++-|-+..|||+..+. .....
T Consensus 113 pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~-~~~vk 189 (364)
T KOG0290|consen 113 PDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV-SGTVK 189 (364)
T ss_pred cchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc-cccee
Confidence 3666654 48999998742 11 1111 124667999999987 45688899999999999998762 11334
Q ss_pred EeccCCCCCCeEEEEecCC-CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeeccccc
Q 002564 308 RFRSGHSAPPLCIRFYANG-RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 386 (907)
Q Consensus 308 ~~~~~h~~~v~~i~~~~~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (907)
..+-.|...|..++|...+ +.+++.|.||++|+||++.-.....+-.
T Consensus 190 TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE-------------------------------- 237 (364)
T KOG0290|consen 190 TQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE-------------------------------- 237 (364)
T ss_pred eEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec--------------------------------
Confidence 5556899999999999854 5788999999999999986543332211
Q ss_pred ccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCC-CEEEEEeC-CCcEEEEeCCCC-ccceeee
Q 002564 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG-NFAVLGTA-GGWIERFNLQSG-ISRGSYL 463 (907)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~-dg~i~i~d~~~~-~~~~~~~ 463 (907)
.+....+...+++++.. +++++-.. ...|.+.|++.. ..+..+
T Consensus 238 ---------------------------------~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L- 283 (364)
T KOG0290|consen 238 ---------------------------------DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL- 283 (364)
T ss_pred ---------------------------------CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh-
Confidence 00112455666666644 56655443 457888998754 333333
Q ss_pred ccccccccCcCCcEEEEEEcCCC-CEEEEEecCCeEEEEECCCCc------eeeeeecCcceeEEEEee-CCCEEEEEeC
Q 002564 464 DMSERSNYAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFKGRD------LKSRWEVGCSLVKIVYHR-VNGLLATVAD 535 (907)
Q Consensus 464 ~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~i~~~~~s~-~~~~la~~~~ 535 (907)
.+|.+.|++++|.|.. ..|+++|.|..+-+||+...- ++..+.....|..+.|++ .+..++++..
T Consensus 284 -------~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 284 -------RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred -------hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence 5999999999999965 789999999999999997542 233445568999999996 5667777654
Q ss_pred C
Q 002564 536 D 536 (907)
Q Consensus 536 d 536 (907)
.
T Consensus 357 k 357 (364)
T KOG0290|consen 357 K 357 (364)
T ss_pred C
Confidence 3
No 220
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=5e-15 Score=163.52 Aligned_cols=236 Identities=17% Similarity=0.188 Sum_probs=164.1
Q ss_pred CCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEEccCCceEEEEeecCCCCEEEEEEecCC
Q 002564 160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG 236 (907)
Q Consensus 160 dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d---g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg 236 (907)
+..|.+||.... ..+.+..|...+.+.+|||+|+.|+.++.+ ..|.+||+.+++.... ... .+...+++|+|||
T Consensus 183 ~~~i~i~d~dg~-~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~-~g~~~~~~wSPDG 259 (429)
T PRK01742 183 PYEVRVADYDGF-NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASF-RGHNGAPAFSPDG 259 (429)
T ss_pred eEEEEEECCCCC-CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecC-CCccCceeECCCC
Confidence 468999998544 456677788899999999999999987643 4799999988764322 111 2345578999999
Q ss_pred CCEEEEEeCCCcEEEE--ECCCceeeeeeecccccCeEEEEEecCCCEEEEEc-CCCcEEEEEccCCCCCcceeEeccCC
Q 002564 237 QPLLASGASSGVISIW--NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGH 313 (907)
Q Consensus 237 ~~~l~sg~~dg~I~iw--d~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h 313 (907)
+.++++.+.+|.+.|| |+.++.. ..+. .+...+....|+|||+.|+.++ .++...+|+++...+..+.+ .+
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt-~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l----~~ 333 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTP-SQLT-SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV----GG 333 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCe-Eeec-cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe----cC
Confidence 9444444567765555 6666654 3444 5667788999999999776554 57889999887655433222 33
Q ss_pred CCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceE
Q 002564 314 SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVV 393 (907)
Q Consensus 314 ~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 393 (907)
.. ....|+|||++++.++.++ +.+||+.++..... ..
T Consensus 334 ~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~l-t~--------------------------------------- 370 (429)
T PRK01742 334 RG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVL-SS--------------------------------------- 370 (429)
T ss_pred CC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEe-cC---------------------------------------
Confidence 33 4578999999998887765 55588765432110 00
Q ss_pred EEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCccceeeecccccccc
Q 002564 394 TCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQ--SGISRGSYLDMSERSNY 471 (907)
Q Consensus 394 ~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~ 471 (907)
. .....++|+|+|++++.++.+|.+.+|.+. .|.....+.
T Consensus 371 ----------------------------~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~-------- 412 (429)
T PRK01742 371 ----------------------------T--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP-------- 412 (429)
T ss_pred ----------------------------C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc--------
Confidence 0 112346799999999999999988877753 466555553
Q ss_pred CcCCcEEEEEEcCC
Q 002564 472 AHNGEVVGVACDST 485 (907)
Q Consensus 472 ~h~~~v~~l~~s~~ 485 (907)
.|.+.+...+|+|-
T Consensus 413 ~~~g~~~~p~wsp~ 426 (429)
T PRK01742 413 GSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCCcccCCC
Confidence 67888888999874
No 221
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.66 E-value=2.3e-12 Score=142.68 Aligned_cols=189 Identities=16% Similarity=0.205 Sum_probs=152.7
Q ss_pred eeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCc----ccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEE
Q 002564 101 LFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKF----TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176 (907)
Q Consensus 101 ~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 176 (907)
+....++.+..++.+.+||...+.. ...+...... ...+..+++. -++++|+.-+.|.+|+....+....
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~----~~~i~~~er~~l~~~~~~g~s~~~--~~i~~gsv~~~iivW~~~~dn~p~~ 170 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSV----LSKIQSDERCTLYSSLIIGDSAEE--LYIASGSVFGEIIVWKPHEDNKPIR 170 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCce----ehhcCCCceEEEEeEEEEeccCcE--EEEEeccccccEEEEeccccCCcce
Confidence 4677888888899999999987766 3333322222 2233356666 6899999999999999874444447
Q ss_pred EcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 002564 177 FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK 256 (907)
Q Consensus 177 ~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~ 256 (907)
+.+|.+.|..+.++-+|.++++.+.|.++++|++++.+.......+|...|..+.|.|+ .+++++.|.+.++|+.+
T Consensus 171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~- 246 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVN- 246 (967)
T ss_pred ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEEEEecc-
Confidence 89999999999999999999999999999999999998877444556899999999998 58999999999999754
Q ss_pred ceeeeeeeccc-ccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 002564 257 RRLQSVIREAH-DNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (907)
Q Consensus 257 ~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~ 300 (907)
++.+..+. +| ...|..++..++...++|++.|+.+++|++...
T Consensus 247 ~~~l~~y~-~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 247 GTQLEVYD-EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred cceehhhh-hhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 44444676 55 457999999999999999999999999987543
No 222
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=8.4e-14 Score=147.93 Aligned_cols=452 Identities=14% Similarity=0.111 Sum_probs=280.0
Q ss_pred ccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCC------------CEEEEEecCCeEEE
Q 002564 140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPAL------------DVVAVGCSDGKIHV 207 (907)
Q Consensus 140 ~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~------------~~la~g~~dg~I~i 207 (907)
...+-++|.| .++.|+ ...|.+-|..+.+.++.+.-|...|+.+.|.|.. -+||++...|.|.+
T Consensus 18 ~~A~Dw~~~G---LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 18 RNAADWSPSG---LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccCccc---eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 3455588887 455564 4569999999999999999999999999998732 16778888899999
Q ss_pred EEccCCceEEEEeecCCCCEEEEEEec---CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEec-CCCEE
Q 002564 208 HNVRYDEELVTFTHSMRGAVTALAFSS---DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVL 283 (907)
Q Consensus 208 wd~~~~~~~~~~~~~~~~~v~~l~fs~---dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l 283 (907)
||...+..+..+.++ ..++..++|-+ +.+.+|++-....+|.+|+..+|+...... .......|+.+.| |.+.+
T Consensus 94 ~d~~~~s~~~~l~~~-~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~-ys~~iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHS-NDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD-YSHEILSCFRVDPFDSRHF 171 (1062)
T ss_pred EEehhhhhhhhhcCC-CcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc-cCCcceeeeeeCCCCcceE
Confidence 999999888888776 78899999876 444577777778899999999999888877 4445667788888 55566
Q ss_pred EEEcCCCcEEEEEccCCC---CCcceeEeccCCCC----------------CC---------eEEEEecCCCEEEEEeCC
Q 002564 284 MSASADNSIKMWIFDTTD---GDPRLLRFRSGHSA----------------PP---------LCIRFYANGRHILSAGQD 335 (907)
Q Consensus 284 ~s~~~d~~i~vw~~~~~~---~~~~~~~~~~~h~~----------------~v---------~~i~~~~~g~~l~s~~~d 335 (907)
..-+..|.+-+-++-... ...+..+....|+. .. ..++|+|.-+.++.....
T Consensus 172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p 251 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP 251 (1062)
T ss_pred EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence 666666766666543221 11222222222222 11 124567765556656667
Q ss_pred CCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeecee---
Q 002564 336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL--- 412 (907)
Q Consensus 336 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~--- 412 (907)
+.+.++|++-........... ...++...-.. .. ...+.|.-.+|.+.+|..+....
T Consensus 252 rellv~dle~~~~l~vvpier---------------~~akfv~vlP~----~~-rd~LfclH~nG~ltirvrk~~~~~f~ 311 (1062)
T KOG1912|consen 252 RELLVFDLEYECCLAVVPIER---------------GGAKFVDVLPD----PR-RDALFCLHSNGRLTIRVRKEEPTEFK 311 (1062)
T ss_pred cceEEEcchhhceeEEEEecc---------------CCcceeEeccC----CC-cceEEEEecCCeEEEEEeeccCcccc
Confidence 779999987665544432211 01112222111 11 22345555667788886554211
Q ss_pred ----------cceeeecCCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEE
Q 002564 413 ----------GEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA 481 (907)
Q Consensus 413 ----------~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 481 (907)
+.+.-....-....+......|. .+.+++-.++|.+.+|.+.+|+....... +...-+..+.
T Consensus 312 ~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s-------~~iel~~pf~ 384 (1062)
T KOG1912|consen 312 KPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRS-------SSIELVLPFD 384 (1062)
T ss_pred ccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccc-------cccccccccc
Confidence 11110001111122233333444 55666777889999999998765443321 1111122222
Q ss_pred EcCC-----CCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCC-------CEEEEEeCCCeEEEEEccccee
Q 002564 482 CDST-----NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVN-------GLLATVADDLVIRLFDVVALRM 549 (907)
Q Consensus 482 ~s~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~-------~~la~~~~dg~I~v~d~~~~~~ 549 (907)
|... ...+..-+.|| ...+|............+...-.|.+ .++|+|...|+|.++|+.++..
T Consensus 385 f~~~~~~v~k~~l~~LS~dg-----~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v 459 (1062)
T KOG1912|consen 385 FNLSTKLVGKTSLISLSDDG-----SHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAV 459 (1062)
T ss_pred ccCceeehhhccccchhhcC-----CCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhh
Confidence 2111 12334444555 11222222221111111111111212 3789999999999999999999
Q ss_pred EEEeecCCCCeeeEEECCCCcEEEEE---------eCCCcEEEEEcCCCcee--eEeee--CCceEEEEECCCCceEEEE
Q 002564 550 VRKFEGHTDRITDFCFSEDGKWLLSS---------GMDGSLRIWDVILARQI--DAIHV--DVSITALSLSPNMDVLATA 616 (907)
Q Consensus 550 ~~~~~~h~~~I~~l~fspdg~~l~s~---------s~Dg~I~vwd~~~~~~~--~~~~~--~~~v~~l~~spdg~~lat~ 616 (907)
.+.+..|+..|.++.|-...+++-.+ +.-+.+.+-|+++|.-. +.++. .++|..+..|.-|+||+..
T Consensus 460 ~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~ 539 (1062)
T KOG1912|consen 460 AASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAIL 539 (1062)
T ss_pred hhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEE
Confidence 99999999999999998766544322 12245778899998543 22232 4469999999999999999
Q ss_pred EecCCeEEEeeccc
Q 002564 617 HVDQNGVYLWVNRC 630 (907)
Q Consensus 617 ~~d~~~i~lW~~~~ 630 (907)
..+. -+.+||.+.
T Consensus 540 Fr~~-plEiwd~kt 552 (1062)
T KOG1912|consen 540 FRRE-PLEIWDLKT 552 (1062)
T ss_pred eccc-chHHHhhcc
Confidence 9999 499999854
No 223
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=6.2e-13 Score=137.29 Aligned_cols=356 Identities=15% Similarity=0.196 Sum_probs=226.1
Q ss_pred EEEEecCCcEEEEecCCCeEEEEEcCC---CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEE
Q 002564 154 VIVGSQEGSLQLWNISTKKKLYEFKGW---GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTAL 230 (907)
Q Consensus 154 l~~~s~dg~i~iwd~~~~~~~~~~~~h---~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l 230 (907)
+++=+..+ +.+|+....+.......+ ..+.+..++|++|+++|.+. +..+.|++..++..+.+... . .++++
T Consensus 5 ~aVRsSe~-~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~--~-~~~~L 79 (566)
T KOG2315|consen 5 YAVRSSEG-FYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL--K-KTYDL 79 (566)
T ss_pred EEEEccce-eEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEecc--c-eeeee
Confidence 34444444 889987654443333333 45578889999999888766 47899999998875544433 2 79999
Q ss_pred EEecCCCCEEEEEe----------CCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 002564 231 AFSSDGQPLLASGA----------SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (907)
Q Consensus 231 ~fs~dg~~~l~sg~----------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~ 300 (907)
.|+|-|. +|.+-- ....+.+|+++++.....+....... ++..|+.|..+.+-- ..+.+.+|+....
T Consensus 80 ~fSP~g~-yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arl-v~nev~f~~~~~f 156 (566)
T KOG2315|consen 80 LFSPKGN-YLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARL-VSNEVQFYDLGSF 156 (566)
T ss_pred eeccccc-ccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhhh-hcceEEEEecCCc
Confidence 9999988 555421 12467899999977776666333333 689999998643322 2567999987653
Q ss_pred CCCcceeEeccCCCCCCeEEEEecCC--CEEEE-----EeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhccc
Q 002564 301 DGDPRLLRFRSGHSAPPLCIRFYANG--RHILS-----AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 373 (907)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~i~~~~~g--~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (907)
.. ... .-|...+....++|.+ ..+++ .|.-+.+++|..........+.....
T Consensus 157 ~~---~~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF---------------- 215 (566)
T KOG2315|consen 157 KT---IQH--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF---------------- 215 (566)
T ss_pred cc---eee--eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc----------------
Confidence 22 222 2356778888888853 33332 34445677776542221111110000
Q ss_pred CceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 002564 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL 453 (907)
Q Consensus 374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~ 453 (907)
....-..+.|.+-|.-|++
T Consensus 216 -------------------------------------------------Fkadkvqm~WN~~gt~LLv------------ 234 (566)
T KOG2315|consen 216 -------------------------------------------------FKADKVQMKWNKLGTALLV------------ 234 (566)
T ss_pred -------------------------------------------------cccceeEEEeccCCceEEE------------
Confidence 0011112222222221111
Q ss_pred CCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEE-
Q 002564 454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLAT- 532 (907)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~- 532 (907)
+....++..+. +--.+.++++.++......-.+...++|.++.|+|+++-+++
T Consensus 235 -----------------------LastdVDktn~---SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~Vv 288 (566)
T KOG2315|consen 235 -----------------------LASTDVDKTNA---SYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVV 288 (566)
T ss_pred -----------------------EEEEeecCCCc---cccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEE
Confidence 01111222221 111245677777775555556666799999999999986655
Q ss_pred -EeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCC---CcEEEEEcCCCceeeEeeeCCceEEEEECC
Q 002564 533 -VADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILARQIDAIHVDVSITALSLSP 608 (907)
Q Consensus 533 -~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D---g~I~vwd~~~~~~~~~~~~~~~v~~l~~sp 608 (907)
|..-..+.|||++ +.++..| ..++-+++-|+|.|++|+.+|-+ |.|-|||+.+.+++..+.... .+-+.|+|
T Consensus 289 yGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-tt~~eW~P 364 (566)
T KOG2315|consen 289 YGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-TTVFEWSP 364 (566)
T ss_pred EecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-ceEEEEcC
Confidence 4556789999986 4555544 45777889999999999988854 899999999988888876543 56689999
Q ss_pred CCceEEEEEec-----CCeEEEeecc
Q 002564 609 NMDVLATAHVD-----QNGVYLWVNR 629 (907)
Q Consensus 609 dg~~lat~~~d-----~~~i~lW~~~ 629 (907)
||++++|+... .++++||+..
T Consensus 365 dGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 365 DGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CCcEEEEEeccccEEecCCeEEEEec
Confidence 99999999853 2369999863
No 224
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.63 E-value=2.7e-11 Score=122.14 Aligned_cols=437 Identities=13% Similarity=0.137 Sum_probs=262.9
Q ss_pred EecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEE-------ecCCeE
Q 002564 133 VKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVG-------CSDGKI 205 (907)
Q Consensus 133 ~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g-------~~dg~I 205 (907)
+.+|.-+.......|+=+...++..+.|. +..+++.+|+..+. ..|-+-|+.-.|+|+|+.+|.. ...+.+
T Consensus 32 ~~~h~~cM~n~~l~PDI~GD~IiFt~~Dd-lWe~slk~g~~~ri-tS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDl 109 (668)
T COG4946 32 IGFHEFCMKNYYLNPDIYGDRIIFTCCDD-LWEYSLKDGKPLRI-TSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADL 109 (668)
T ss_pred ehhhhhhhhhhhcCCcccCcEEEEEechH-HHHhhhccCCeeEE-ecccceeccccCCCCCcEEEEEEEEecCCCccccE
Confidence 33454444445577887666666665554 66667788877654 4457888999999999988862 223568
Q ss_pred EEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcE----EEEECCCcee-eeeeecccccCeEEEEEecCC
Q 002564 206 HVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI----SIWNLEKRRL-QSVIREAHDNAIISLHFFANE 280 (907)
Q Consensus 206 ~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I----~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~ 280 (907)
.+++.+.|+..+.--.+ ..--.-.-|.|||+ ++++...-.-. .+|.+..... ...+ .-++.+.+.+- ||
T Consensus 110 y~v~~e~Ge~kRiTyfG-r~fT~VaG~~~dg~-iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L---nlGpathiv~~-dg 183 (668)
T COG4946 110 YVVPSEDGEAKRITYFG-RRFTRVAGWIPDGE-IIVSTDFHTPFSQWTELYKVNVDGIKTEPL---NLGPATHIVIK-DG 183 (668)
T ss_pred EEEeCCCCcEEEEEEec-cccceeeccCCCCC-EEEEeccCCCcccceeeeEEccCCceeeec---cCCceeeEEEe-CC
Confidence 88888888754433322 22233455999998 66665432222 2222221111 1111 22344444443 34
Q ss_pred CEEEEEcCCC------------cEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceeccc
Q 002564 281 PVLMSASADN------------SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348 (907)
Q Consensus 281 ~~l~s~~~d~------------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~ 348 (907)
.++.|-.-- .=++|.-..+.......-.+.+|-..+. .- .++..+....||.=.++++.-...
T Consensus 184 -~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~Pm---IV-~~RvYFlsD~eG~GnlYSvdldGk 258 (668)
T COG4946 184 -IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPM---IV-GERVYFLSDHEGVGNLYSVDLDGK 258 (668)
T ss_pred -EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCce---EE-cceEEEEecccCccceEEeccCCc
Confidence 333322111 1245533222212233333344433222 11 122223334454444444321110
Q ss_pred ceeechhhhhHHHhhccchhhhcccCceeEeeeccccc--ccccceEEEeeCCceEEEEEeeeceecceeeecCCC-CCC
Q 002564 349 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE--RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE-NPT 425 (907)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~-~~~ 425 (907)
.+ ..-+.|.-...|. .|+..++ -...+.++++|..+..+.+..+..... ...
T Consensus 259 -------Dl----------------rrHTnFtdYY~R~~nsDGkrIv--Fq~~GdIylydP~td~lekldI~lpl~rk~k 313 (668)
T COG4946 259 -------DL----------------RRHTNFTDYYPRNANSDGKRIV--FQNAGDIYLYDPETDSLEKLDIGLPLDRKKK 313 (668)
T ss_pred -------hh----------------hhcCCchhccccccCCCCcEEE--EecCCcEEEeCCCcCcceeeecCCccccccc
Confidence 00 0001111111222 2333333 345678899998877664443331111 111
Q ss_pred c------eEEEE-EcC-CCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCC-
Q 002564 426 A------VKACT-ISA-CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG- 496 (907)
Q Consensus 426 ~------v~~~~-~s~-~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg- 496 (907)
. ..-+. +++ +|++++..+ -|...+.+...+-.++ -+|.+.|.-..+..+++-++.|..||
T Consensus 314 ~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq----------v~~~~~VrY~r~~~~~e~~vigt~dgD 382 (668)
T COG4946 314 QPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ----------VGKKGGVRYRRIQVDPEGDVIGTNDGD 382 (668)
T ss_pred cccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE----------cCCCCceEEEEEccCCcceEEeccCCc
Confidence 1 11111 222 466766654 4567777766555444 37888898888888888899999999
Q ss_pred eEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEe
Q 002564 497 DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG 576 (907)
Q Consensus 497 ~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s 576 (907)
.+-|+|..+++.......-+.|.++..+++|++++++.+...+.++|++++.....=+...+-|+.+.|||+++|+|-+-
T Consensus 383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYaf 462 (668)
T COG4946 383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAF 462 (668)
T ss_pred eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEec
Confidence 89999999998777777779999999999999999999999999999999987655555668899999999999999887
Q ss_pred CCC----cEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEe
Q 002564 577 MDG----SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHV 618 (907)
Q Consensus 577 ~Dg----~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~ 618 (907)
-+| .|+++|+.+++..+.-.....-.+-+|.|||++|..-+.
T Consensus 463 P~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 463 PEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred CcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 665 699999999887776555444667889999999887654
No 225
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=9.1e-13 Score=136.06 Aligned_cols=374 Identities=13% Similarity=0.174 Sum_probs=237.3
Q ss_pred EEecCCcEEEEecCCCCccccceeeEecC--CCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEE
Q 002564 108 SIDIDGNMFIWAFKGIEENLAPVGHVKLD--DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSIS 185 (907)
Q Consensus 108 s~~~dg~v~vWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~ 185 (907)
.....-.+.+|+....... ..++... ......+++++++ +.++.+ .+..+.|++..++..+.+.... .+.
T Consensus 6 aVRsSe~~~l~~~~~~~~~---~~~f~~~~~~~~~~v~~~S~~G--~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~ 77 (566)
T KOG2315|consen 6 AVRSSEGFYLFNGPGSKDA---VTVFEQNKTSRPCNVFAYSNNG--RLFAYS-DNQVVKVFEIATLKVVLCVELK--KTY 77 (566)
T ss_pred EEEccceeEEeccCCcccc---ccccccCCCCCcceeEEEcCCC--cEEEEE-cCCeEEEEEccCCcEEEEeccc--eee
Confidence 3334555788877654331 1222221 2224577788888 455554 6677999999988766666553 889
Q ss_pred EEEEcCCCCEEEEE-----ec-----CCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 002564 186 SCVSSPALDVVAVG-----CS-----DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE 255 (907)
Q Consensus 186 ~l~~sp~~~~la~g-----~~-----dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~ 255 (907)
++.|||.|.+|.+= .. .-.+.+|+++++.....+....+.. .+..|+.|.. +++--..+.+.+|++.
T Consensus 78 ~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEs--l~arlv~nev~f~~~~ 154 (566)
T KOG2315|consen 78 DLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDES--LAARLVSNEVQFYDLG 154 (566)
T ss_pred eeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchh--hhhhhhcceEEEEecC
Confidence 99999999988752 11 2357899999977666666543333 6999999986 4433456789999998
Q ss_pred CceeeeeeecccccCeEEEEEecCC-C-EEEE-----EcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCE
Q 002564 256 KRRLQSVIREAHDNAIISLHFFANE-P-VLMS-----ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH 328 (907)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~~~~~-~-~l~s-----~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~ 328 (907)
+.+....- -|...|+.+.++|.+ . .+++ .|.-..|++|.+.... ....+....-....=..+.|++-|.-
T Consensus 155 ~f~~~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~-~~~~~a~ksFFkadkvqm~WN~~gt~ 231 (566)
T KOG2315|consen 155 SFKTIQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG-QHQPVANKSFFKADKVQMKWNKLGTA 231 (566)
T ss_pred Cccceeee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc-ccchhhhccccccceeEEEeccCCce
Confidence 85544443 378889999999983 3 3333 3445678998765221 11111111111222234555554433
Q ss_pred EEE-EeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEe
Q 002564 329 ILS-AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRL 407 (907)
Q Consensus 329 l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~ 407 (907)
|+. ++.| +.
T Consensus 232 LLvLastd-------VD--------------------------------------------------------------- 241 (566)
T KOG2315|consen 232 LLVLASTD-------VD--------------------------------------------------------------- 241 (566)
T ss_pred EEEEEEEe-------ec---------------------------------------------------------------
Confidence 221 1111 00
Q ss_pred eeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCC
Q 002564 408 QNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT 487 (907)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 487 (907)
..+ .+-+...++++++++.....-.+ ...++|.++.|+|+++
T Consensus 242 --------------------------ktn---~SYYGEq~Lyll~t~g~s~~V~L---------~k~GPVhdv~W~~s~~ 283 (566)
T KOG2315|consen 242 --------------------------KTN---ASYYGEQTLYLLATQGESVSVPL---------LKEGPVHDVTWSPSGR 283 (566)
T ss_pred --------------------------CCC---ccccccceEEEEEecCceEEEec---------CCCCCceEEEECCCCC
Confidence 000 00012234455555421111111 4578999999999997
Q ss_pred EEEEE--ecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCC---CeEEEEEcccceeEEEeecCCCCeee
Q 002564 488 LMISA--GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITD 562 (907)
Q Consensus 488 ~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---g~I~v~d~~~~~~~~~~~~h~~~I~~ 562 (907)
-++++ -+-..+.|+|++. .++..+ ..++-+++-|+|.|++++.++-+ |.+.|||+.+.+++..+..... +-
T Consensus 284 EF~VvyGfMPAkvtifnlr~-~~v~df-~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~ 359 (566)
T KOG2315|consen 284 EFAVVYGFMPAKVTIFNLRG-KPVFDF-PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TV 359 (566)
T ss_pred EEEEEEecccceEEEEcCCC-CEeEeC-CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eE
Confidence 66554 3667899999764 333333 23677899999999999887764 7999999999999988876543 45
Q ss_pred EEECCCCcEEEEEeC------CCcEEEEEcCCCceeeEeeeCCceEEEEECC
Q 002564 563 FCFSEDGKWLLSSGM------DGSLRIWDVILARQIDAIHVDVSITALSLSP 608 (907)
Q Consensus 563 l~fspdg~~l~s~s~------Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~sp 608 (907)
+.|+|||+|++|++. |..++||++. |..+..-...+....+.|-|
T Consensus 360 ~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKSELLQVEWRP 410 (566)
T ss_pred EEEcCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhHhHhheeeee
Confidence 789999999998874 7789999974 77776655555566666655
No 226
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=2.4e-15 Score=150.69 Aligned_cols=268 Identities=15% Similarity=0.202 Sum_probs=209.1
Q ss_pred CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC
Q 002564 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (907)
Q Consensus 224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 303 (907)
....+.+.++.+|+ +|+.|+..|.|..+|..++++...+. -...|.++.|..+.++++++- .+.+.|||-. .
T Consensus 129 eFGPY~~~ytrnGr-hlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~--G-- 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGR-HLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNN--G-- 200 (545)
T ss_pred ccCCeeeeecCCcc-EEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhhh-hceEEEecCC--C--
Confidence 34568899999999 78889999999999999999998886 567899999999998888775 5678888532 2
Q ss_pred cceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecc
Q 002564 304 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 383 (907)
Q Consensus 304 ~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 383 (907)
..+..+..| ..|..+.|.|---+|++++..|.++.-|+.+++.+.++..+
T Consensus 201 -tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~---------------------------- 250 (545)
T KOG1272|consen 201 -TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG---------------------------- 250 (545)
T ss_pred -cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc----------------------------
Confidence 334444444 57889999998878889999999999999988876654321
Q ss_pred cccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeee
Q 002564 384 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 463 (907)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~ 463 (907)
.+.+..++-+|-...+-+|..+|+|.+|...+..++..+.
T Consensus 251 ----------------------------------------~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL 290 (545)
T KOG1272|consen 251 ----------------------------------------AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL 290 (545)
T ss_pred ----------------------------------------CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH
Confidence 2566777778888889999999999999999998888775
Q ss_pred ccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEE
Q 002564 464 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFD 543 (907)
Q Consensus 464 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d 543 (907)
.|.++|.+++++++|++++|+|.|..++|||+.....+.++....+...+++|..| +||++ ....|.||.
T Consensus 291 --------cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~-~G~~v~iw~ 360 (545)
T KOG1272|consen 291 --------CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALS-YGDHVQIWK 360 (545)
T ss_pred --------hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeee-cCCeeeeeh
Confidence 89999999999999999999999999999999998877777777788888998644 44444 345788884
Q ss_pred -cccce--eEEEeecC--CCCeeeEEECCCCcEEEEEeCCC
Q 002564 544 -VVALR--MVRKFEGH--TDRITDFCFSEDGKWLLSSGMDG 579 (907)
Q Consensus 544 -~~~~~--~~~~~~~h--~~~I~~l~fspdg~~l~s~s~Dg 579 (907)
.-.+. .-..+-.| .++|.++.|.|-...|-.|-..|
T Consensus 361 d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 361 DALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred hhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 22211 11112223 25788999998776666655444
No 227
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=3.8e-14 Score=156.53 Aligned_cols=235 Identities=9% Similarity=0.095 Sum_probs=164.1
Q ss_pred CCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCC---CcEEEEEccCCCCCcceeEeccCCCCCCeEEEE
Q 002564 246 SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD---NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRF 322 (907)
Q Consensus 246 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d---~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~ 322 (907)
+..|.+||..... ...+. .|...+.+..|+|||+.|+.++.+ ..|++|++..+ ..+.+....+|. ..++|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt-~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg--~~~~l~~~~g~~---~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVN-RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSG--ARKVVASFRGHN---GAPAF 255 (429)
T ss_pred eEEEEEECCCCCC-ceEec-cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCC--ceEEEecCCCcc---CceeE
Confidence 4689999986655 34454 677889999999999999887654 36899987643 333444444443 46899
Q ss_pred ecCCCEEEEEe-CCCCEEEEEce--ecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCC
Q 002564 323 YANGRHILSAG-QDRAFRLFSVI--QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT 399 (907)
Q Consensus 323 ~~~g~~l~s~~-~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 399 (907)
+|||+.|+.++ .+|...+|.+. ++.. ..+
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~l----------------------------------------------- 287 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGGTP-SQL----------------------------------------------- 287 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCCCe-Eee-----------------------------------------------
Confidence 99999888764 67876666442 2110 000
Q ss_pred ceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccceeeeccccccccCcCCcEE
Q 002564 400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 478 (907)
Q Consensus 400 ~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~ 478 (907)
..+...+...+|+|||+.++..+ .+|...+|++.......... .+.. .
T Consensus 288 ---------------------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--------~~~~--~ 336 (429)
T PRK01742 288 ---------------------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--------GGRG--Y 336 (429)
T ss_pred ---------------------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--------cCCC--C
Confidence 01224567889999999877655 56888888765322211111 2222 3
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcc--cceeEEEeecC
Q 002564 479 GVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV--ALRMVRKFEGH 556 (907)
Q Consensus 479 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~--~~~~~~~~~~h 556 (907)
...|+|+|+.++.++.++ +.+||+.+++....... .......|+|+|++++.++.++.+.+|++. +++..+++.+|
T Consensus 337 ~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~ 414 (429)
T PRK01742 337 SAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS 414 (429)
T ss_pred CccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC
Confidence 578999999998888765 55599988875433222 234567899999999999999988888763 57888999999
Q ss_pred CCCeeeEEECCC
Q 002564 557 TDRITDFCFSED 568 (907)
Q Consensus 557 ~~~I~~l~fspd 568 (907)
.+.+...+|||-
T Consensus 415 ~g~~~~p~wsp~ 426 (429)
T PRK01742 415 DGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCcccCCC
Confidence 999999999984
No 228
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.61 E-value=1.8e-12 Score=132.05 Aligned_cols=359 Identities=13% Similarity=0.183 Sum_probs=239.4
Q ss_pred EEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEE
Q 002564 164 QLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASG 243 (907)
Q Consensus 164 ~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg 243 (907)
..|+..+...-..+....-++...++||.|.+|++.... .|.+|.-..+..+..+.+ ..|..+.|+|.+. +|.+-
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~---~~V~~~~fSP~~k-YL~tw 89 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRH---PDVKYLDFSPNEK-YLVTW 89 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeeec---CCceecccCcccc-eeeee
Confidence 345555555545555467889999999999999988775 489999888777766665 4699999999999 88876
Q ss_pred eCC---------------CcEEEEECCCceeeeeeecccccC--eE-EEEEecCCCEEEEEcCCCcEEEEEccCCCCCcc
Q 002564 244 ASS---------------GVISIWNLEKRRLQSVIREAHDNA--II-SLHFFANEPVLMSASADNSIKMWIFDTTDGDPR 305 (907)
Q Consensus 244 ~~d---------------g~I~iwd~~~~~~~~~~~~~h~~~--V~-~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~ 305 (907)
+.. +.+.+||+.+|.++..+. .-..+ .. -+.|+-+..+++-.. ...++++++ +.+-...
T Consensus 90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~-~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~ 166 (561)
T COG5354 90 SREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFN-GISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEH 166 (561)
T ss_pred ccCCccChhhccCCccccCceeEEeccCceeEeecc-ccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccccC
Confidence 543 359999999999999887 44443 44 678888887766553 457899986 3322211
Q ss_pred eeEeccCCCCCCeEEEEecCC--CEEEE-----EeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeE
Q 002564 306 LLRFRSGHSAPPLCIRFYANG--RHILS-----AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIA 378 (907)
Q Consensus 306 ~~~~~~~h~~~v~~i~~~~~g--~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 378 (907)
....+ ....+....|+|.+ ..|+. .+.++++++|.+........-.
T Consensus 167 p~~~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~------------------------- 219 (561)
T COG5354 167 PFKNL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN------------------------- 219 (561)
T ss_pred chhhc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-------------------------
Confidence 11211 13567777888853 33332 3455666666665322221100
Q ss_pred eeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe-----------CCCc
Q 002564 379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-----------AGGW 447 (907)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-----------~dg~ 447 (907)
++. ..-..+.|.+.|+++++-. ....
T Consensus 220 -------------------------lfk------------------~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn 256 (561)
T COG5354 220 -------------------------LFK------------------VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN 256 (561)
T ss_pred -------------------------eEe------------------ecccEEEEecCCceEEEEEEEeeecccceeccce
Confidence 000 1122345566666554321 1246
Q ss_pred EEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe--cCCeEEEEECCCCceeeeeecCcceeEEEEee
Q 002564 448 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG--YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHR 525 (907)
Q Consensus 448 i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~ 525 (907)
+++++++....... ..-.++|...+|.|.++.+++.+ .+..+.++|+... +..+-....-..+.|+|
T Consensus 257 Lyl~~~~e~~i~V~---------~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp 325 (561)
T COG5354 257 LYLLRITERSIPVE---------KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSP 325 (561)
T ss_pred EEEEeeccccccee---------ccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccC
Confidence 77888774333222 14578999999999887766544 7788999998876 33344445667789999
Q ss_pred CCCEEEEEeCC---CeEEEEEcccceeEE-EeecCCCCeeeEEECCCCcEEEEEe------CCCcEEEEEcCCCceeeEe
Q 002564 526 VNGLLATVADD---LVIRLFDVVALRMVR-KFEGHTDRITDFCFSEDGKWLLSSG------MDGSLRIWDVILARQIDAI 595 (907)
Q Consensus 526 ~~~~la~~~~d---g~I~v~d~~~~~~~~-~~~~h~~~I~~l~fspdg~~l~s~s------~Dg~I~vwd~~~~~~~~~~ 595 (907)
.++++++++-| |.|.+||......+. .+.+... +-+.|+|||+++.++. .|..|.+||+......
T Consensus 326 ~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~--s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--- 400 (561)
T COG5354 326 HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT--SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--- 400 (561)
T ss_pred cccEEEEecCCccccceEEeccCCceEEEEEeecCCc--eEeeccCCceEEEecCCCcccccCcceEEEEecCchhh---
Confidence 99999887665 689999988765444 6765443 3457999999988764 3788999998744322
Q ss_pred eeCCceEEEEECCCCceEEEEEecC
Q 002564 596 HVDVSITALSLSPNMDVLATAHVDQ 620 (907)
Q Consensus 596 ~~~~~v~~l~~spdg~~lat~~~d~ 620 (907)
..+.+.|.|.|++.-+.+...
T Consensus 401 ----el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 401 ----ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ----hhhhccccCCcccceeeccCC
Confidence 466789999988877766554
No 229
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.60 E-value=2.4e-13 Score=130.37 Aligned_cols=208 Identities=13% Similarity=0.159 Sum_probs=164.9
Q ss_pred CCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCC---eEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccC
Q 002564 136 DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK---KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY 212 (907)
Q Consensus 136 ~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~---~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~ 212 (907)
-...+...+++++. ..++++..+..|.||..... +..++++.|...|+++.|+|..+.|++++.|..-.+|....
T Consensus 9 ~~~pitchAwn~dr--t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDR--TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCC--ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence 34556677899998 88999999999999987654 57899999999999999999999999999999999999843
Q ss_pred C---ceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCcee---eeeeecccccCeEEEEEecCCCEEEEE
Q 002564 213 D---EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL---QSVIREAHDNAIISLHFFANEPVLMSA 286 (907)
Q Consensus 213 ~---~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~ 286 (907)
+ ++...+... +...+++.|+|.+. .+|+|+....|.||=.+...- -+.++..+.+.|+++.|+|++-+|++|
T Consensus 87 ~~~WkptlvLlRi-NrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRI-NRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEe-ccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 3 233444443 67899999999998 899999999999998765532 223334678899999999999999999
Q ss_pred cCCCcEEEEEccCC-----CC---------CcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecc
Q 002564 287 SADNSIKMWIFDTT-----DG---------DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ 347 (907)
Q Consensus 287 ~~d~~i~vw~~~~~-----~~---------~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~ 347 (907)
+.|+..+++..-.. .. -..++.......+.+..+.|+|+|..|+-.+.|+++.+-|...+.
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 99999999854211 10 011222333556789999999999999999999999998876553
No 230
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.8e-13 Score=139.51 Aligned_cols=271 Identities=14% Similarity=0.180 Sum_probs=196.8
Q ss_pred ccccCeEEEEEecCCCEEE-EEcCCCcEEEEEccCCCCCcceeEeccCC-CCCCeEEEEecCCCEEEEEeCCCCEEEEEc
Q 002564 266 AHDNAIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGH-SAPPLCIRFYANGRHILSAGQDRAFRLFSV 343 (907)
Q Consensus 266 ~h~~~V~~l~~~~~~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~ 343 (907)
.|....+.|..+|||++++ +|..--.|++||+.... ++.-... ...|.-.-.+.|-..++.--.|++|-+..-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-----LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-----LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce-----eeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 4777889999999999765 55567899999886542 2222122 223333334445445555555665544321
Q ss_pred eecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCC
Q 002564 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423 (907)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~ 423 (907)
.... ..++.
T Consensus 124 ~G~h-------------------------------------------------------------------y~~RI---- 132 (703)
T KOG2321|consen 124 YGRH-------------------------------------------------------------------YRTRI---- 132 (703)
T ss_pred cCee-------------------------------------------------------------------eeeec----
Confidence 1000 00000
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 002564 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (907)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 503 (907)
+..-..++++.-..-|+++.....|+.+|+..|..+..+. ...+.++++.+++...+|++|+.+|.|.+||.
T Consensus 133 P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~--------~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE--------TDSGELNVVSINEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred CcCCccccccCCCccEEEeecCcceEEEEccccccccccc--------cccccceeeeecCccceEEecccCceEEEecc
Confidence 1222344444444456667777889999999999988875 55688999999999999999999999999999
Q ss_pred CCCceeeeeecCc------------ceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee-cCCCCeeeEEECCC--
Q 002564 504 KGRDLKSRWEVGC------------SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCFSED-- 568 (907)
Q Consensus 504 ~~~~~~~~~~~~~------------~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~-~h~~~I~~l~fspd-- 568 (907)
.....+.++.... .|+++.|+.+|-.+++|+.+|.|.|||+.+.+++..-. +..-+|..+.|.+.
T Consensus 205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence 9887777665443 39999999999999999999999999999988765433 33467889999775
Q ss_pred CcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCC
Q 002564 569 GKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN 621 (907)
Q Consensus 569 g~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~ 621 (907)
+..++|. ....++|||-.+|+....+....++..+|+-|++-++.+|-.+..
T Consensus 285 q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~ 336 (703)
T KOG2321|consen 285 QNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSK 336 (703)
T ss_pred CceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCc
Confidence 3455554 456899999999999999998888999999999999999987764
No 231
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.59 E-value=1.7e-13 Score=132.35 Aligned_cols=331 Identities=16% Similarity=0.219 Sum_probs=215.4
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCce----EEEEeecC------------CCCEEEEEEecCCC-CEEEEE
Q 002564 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE----LVTFTHSM------------RGAVTALAFSSDGQ-PLLASG 243 (907)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~----~~~~~~~~------------~~~v~~l~fs~dg~-~~l~sg 243 (907)
..-|.++.|...|.+||+|..+|.|.++.-..... ..+..+.| ...|..+.|.+++. ..+...
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 56789999999999999999999999997543221 22222222 24688899988764 245556
Q ss_pred eCCCcEEEEECCCce-----------------------------------eeeeeecccccCeEEEEEecCCCEEEEEcC
Q 002564 244 ASSGVISIWNLEKRR-----------------------------------LQSVIREAHDNAIISLHFFANEPVLMSASA 288 (907)
Q Consensus 244 ~~dg~I~iwd~~~~~-----------------------------------~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~ 288 (907)
+.|.+|++|-+.... +...+..+|..-|.++.+..|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 679999999875331 12223357889999999999999888875
Q ss_pred CCcEEEEEccCCCCCcceeEeccC----CCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhh
Q 002564 289 DNSIKMWIFDTTDGDPRLLRFRSG----HSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 363 (907)
Q Consensus 289 d~~i~vw~~~~~~~~~~~~~~~~~----h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 363 (907)
|=.|.+|+++..++...++..... -+.-|++..|+| .-..++..+..|+|++.|++.......-
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h----------- 252 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH----------- 252 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch-----------
Confidence 778999999887766555543322 134578888888 4567777888899999887643211000
Q ss_pred ccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe
Q 002564 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (907)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 443 (907)
T Consensus 253 -------------------------------------------------------------------------------- 252 (433)
T KOG1354|consen 253 -------------------------------------------------------------------------------- 252 (433)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC-CCceeeeeecC-------
Q 002564 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVG------- 515 (907)
Q Consensus 444 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~------- 515 (907)
-.+|.......-..+ ...--..|..+.|++.|+++++-+. -+|++||+. ..+++.+++.+
T Consensus 253 ----sKlfEepedp~~rsf-------fseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kL 320 (433)
T KOG1354|consen 253 ----SKLFEEPEDPSSRSF-------FSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKL 320 (433)
T ss_pred ----hhhhccccCCcchhh-------HHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHH
Confidence 000000000000000 0134467889999999999988765 799999994 55666666543
Q ss_pred ---------cceeEEEEeeCCCEEEEEeCCCeEEEEEccccee-EEEeecCCCC--eeeEEECCCCcEEEEEeCCCcEEE
Q 002564 516 ---------CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-VRKFEGHTDR--ITDFCFSEDGKWLLSSGMDGSLRI 583 (907)
Q Consensus 516 ---------~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~-~~~~~~h~~~--I~~l~fspdg~~l~s~s~Dg~I~v 583 (907)
-.-..++|+.++..+++|+.....++|+...|.. -.++...... ...+ ..-+.+.+++....
T Consensus 321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~--- 394 (433)
T KOG1354|consen 321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKR--- 394 (433)
T ss_pred HHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccc---ccceeeecCCCccc---
Confidence 1224578998899999999999999999766533 2233322221 1111 11233444444433
Q ss_pred EEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEee
Q 002564 584 WDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV 627 (907)
Q Consensus 584 wd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~ 627 (907)
..--+..+.....+...+|+|..+.+|.+..+. ++++.
T Consensus 395 ----~~~~vd~ldf~kkilh~aWhp~en~ia~aatnn--lyif~ 432 (433)
T KOG1354|consen 395 ----DEISVDALDFRKKILHTAWHPKENSIAVAATNN--LYIFQ 432 (433)
T ss_pred ----cccccchhhhhhHHHhhccCCccceeeeeecCc--eEEec
Confidence 222234445555678899999999999998876 77763
No 232
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=7.3e-12 Score=132.02 Aligned_cols=518 Identities=12% Similarity=0.130 Sum_probs=318.8
Q ss_pred CCcceEEEEEecCeEEEEEcCe---EEEEeCCee-----------------EEEEcccccceEEEEee--CCEEEEEecC
Q 002564 55 LPKKIRALASYRDYTFAAYGNH---IAVVKRAHQ-----------------VATWSRHSAKVNLLLLF--GEHILSIDID 112 (907)
Q Consensus 55 ~~~~I~~la~~~~~~~~a~g~~---I~vw~~~~~-----------------~~~~~~h~~~V~~l~~~--g~~l~s~~~d 112 (907)
......|++|..+.-|+|+|+. ++|.+.+.. -+++.||.+.|.-+.|+ .+.|-|.+.+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 3456789999999999999876 666653211 23488999999999995 5678888889
Q ss_pred CcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEE--EEcCCCCCEEEEEEc
Q 002564 113 GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLY--EFKGWGSSISSCVSS 190 (907)
Q Consensus 113 g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~h~~~I~~l~~s 190 (907)
|.|.||-+-.+.-....+. .-....+.++.|..+| .++.+...||.|.+=.++. ..+. .+++ .....+.|+
T Consensus 93 GlIiVWmlykgsW~EEMiN--nRnKSvV~SmsWn~dG--~kIcIvYeDGavIVGsvdG-NRIwgKeLkg--~~l~hv~ws 165 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMIN--NRNKSVVVSMSWNLDG--TKICIVYEDGAVIVGSVDG-NRIWGKELKG--QLLAHVLWS 165 (1189)
T ss_pred ceEEEEeeecccHHHHHhh--CcCccEEEEEEEcCCC--cEEEEEEccCCEEEEeecc-ceecchhcch--heccceeec
Confidence 9999998877654111111 1123455666677777 7777777787776655532 2222 2332 334578899
Q ss_pred CCCCEEEEEecCCeEEEEEccCCc-------eEEEEeec---CCCCEEEEEEe--------cCCCCEEEEEeCCCcEEEE
Q 002564 191 PALDVVAVGCSDGKIHVHNVRYDE-------ELVTFTHS---MRGAVTALAFS--------SDGQPLLASGASSGVISIW 252 (907)
Q Consensus 191 p~~~~la~g~~dg~I~iwd~~~~~-------~~~~~~~~---~~~~v~~l~fs--------~dg~~~l~sg~~dg~I~iw 252 (907)
+|.+.+..+-.+|.+++||....- +.....+. ....|..+.|. ||.. .++++..+|.+.|-
T Consensus 166 ~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiM 244 (1189)
T KOG2041|consen 166 EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIM 244 (1189)
T ss_pred ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCceehhh
Confidence 999998889999999999976321 11111111 12246666664 3544 89999999999888
Q ss_pred ECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCC---------cEEEEEccCCCCCcceeEeccCCCCCCeEEEEe
Q 002564 253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN---------SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323 (907)
Q Consensus 253 d~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~---------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 323 (907)
.-++......+. ..-.+....|+++|..|+.+|.+. .|.++. .-...+.++.-....|++++|-
T Consensus 245 R~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-----p~G~i~gtlkvpg~~It~lsWE 317 (1189)
T KOG2041|consen 245 RSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-----PYGHIVGTLKVPGSCITGLSWE 317 (1189)
T ss_pred hhcCCCCCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEec-----cchhheEEEecCCceeeeeEEc
Confidence 766554444444 236789999999999999998652 344441 1224566666677889999998
Q ss_pred cCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEE-e---eCC
Q 002564 324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTC-H---MDT 399 (907)
Q Consensus 324 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~---~~~ 399 (907)
..|-.++.+ .|+.|.+=+++..-.-..+.. .++.. . ...
T Consensus 318 g~gLriA~A-vdsfiyfanIRP~ykWgy~e~------------------------------------TvVy~y~~~e~p~ 360 (1189)
T KOG2041|consen 318 GTGLRIAIA-VDSFIYFANIRPEYKWGYIEE------------------------------------TVVYVYQKEELPQ 360 (1189)
T ss_pred CCceEEEEE-ecceEEEEeecccceEEEeee------------------------------------EEEEEEccCCCcc
Confidence 877666554 467777766654322111110 01111 0 112
Q ss_pred ceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccc---cccCcCCc
Q 002564 400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER---SNYAHNGE 476 (907)
Q Consensus 400 ~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~h~~~ 476 (907)
..+..||..+....... -....++++..+--.++.-..+|.+.-++.-.......+...... .....-..
T Consensus 361 y~i~Fwdtk~nek~vK~-------V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytd 433 (1189)
T KOG2041|consen 361 YGIMFWDTKTNEKTVKT-------VTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTD 433 (1189)
T ss_pred eEEEEEecccChhhhhh-------hcceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcce
Confidence 45667887665332111 134556677766667777777777766632211111101000000 00011111
Q ss_pred EEEEEEcCCCCEEEEEecCCeEEEEECCCCcee-------------------------eee--------ecCcceeEEEE
Q 002564 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK-------------------------SRW--------EVGCSLVKIVY 523 (907)
Q Consensus 477 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-------------------------~~~--------~~~~~i~~~~~ 523 (907)
|.-.-..-++..++.++. ..+.+|.+...+.. ..+ ....+|..++.
T Consensus 434 irP~Fv~vn~~~vviAS~-e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~ 512 (1189)
T KOG2041|consen 434 IRPKFVCVNGICVVIASE-ERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCI 512 (1189)
T ss_pred eeeeEEEecceEEEEecc-ccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeee
Confidence 222222234555666665 45677865432110 000 11256767766
Q ss_pred eeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcC---CCceeeEe-eeCC
Q 002564 524 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI---LARQIDAI-HVDV 599 (907)
Q Consensus 524 s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~---~~~~~~~~-~~~~ 599 (907)
+ .+++.++-..|.|.-|.+.+.-+..... -...|.+++.+-+...++.-..-|.+.+.|+. +|..+..+ +...
T Consensus 513 s--dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~er 589 (1189)
T KOG2041|consen 513 S--DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSER 589 (1189)
T ss_pred c--ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhh
Confidence 5 6889999999999999998876665554 44678899998888888888888888888886 45555533 3333
Q ss_pred -ceEEEEECCCCceEEEEEecCCeEEEeecccccccCC
Q 002564 600 -SITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDS 636 (907)
Q Consensus 600 -~v~~l~~spdg~~lat~~~d~~~i~lW~~~~~~~~~~ 636 (907)
.|+.+.|..|...|.+--... .+++++....-.|++
T Consensus 590 rDVWd~~Wa~dNp~llAlmeKt-rmyifrgndpeEp~s 626 (1189)
T KOG2041|consen 590 RDVWDYEWAQDNPNLLALMEKT-RMYIFRGNDPEEPSS 626 (1189)
T ss_pred hhhhhhhhccCCchHHhhhhhc-eEEEecCcCcccccc
Confidence 499999999887666554444 488888765555544
No 233
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=2.6e-13 Score=133.76 Aligned_cols=273 Identities=13% Similarity=0.183 Sum_probs=192.1
Q ss_pred CCEEEEEEecCCCCEEEEEe-CCCcEEEEECCCceeeeeee-----cccccCeEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 002564 225 GAVTALAFSSDGQPLLASGA-SSGVISIWNLEKRRLQSVIR-----EAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298 (907)
Q Consensus 225 ~~v~~l~fs~dg~~~l~sg~-~dg~I~iwd~~~~~~~~~~~-----~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~ 298 (907)
..|++++|..|++.-+..+. .+..+..+.+....+..... .....+|..+... |+ .|++|-.+|.+.+|...
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEecc
Confidence 57888888877654444444 66777777777665555431 1345667777664 33 68888889999999876
Q ss_pred CCCCCcceeEeccCCCCCCeEEEEecC-CCEEEEEeCC--CCEEEEEceecccceeechhhhhHHHhhccchhhhcccCc
Q 002564 299 TTDGDPRLLRFRSGHSAPPLCIRFYAN-GRHILSAGQD--RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKP 375 (907)
Q Consensus 299 ~~~~~~~~~~~~~~h~~~v~~i~~~~~-g~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (907)
.++.....+..+..+ .++..+.-++. ...+++||.. ..+.+||+...+++
T Consensus 134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi-------------------------- 186 (412)
T KOG3881|consen 134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI-------------------------- 186 (412)
T ss_pred CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceee--------------------------
Confidence 544222222222222 34555555553 3345557777 67788887654222
Q ss_pred eeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 002564 376 VIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQS 455 (907)
Q Consensus 376 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~ 455 (907)
|...+-. +. + -+=.|-+
T Consensus 187 -----------------------------w~aKNvp-----------------------nD-~-----L~LrVPv----- 203 (412)
T KOG3881|consen 187 -----------------------------WSAKNVP-----------------------ND-R-----LGLRVPV----- 203 (412)
T ss_pred -----------------------------eeccCCC-----------------------Cc-c-----ccceeee-----
Confidence 1111100 00 0 0001222
Q ss_pred CccceeeeccccccccCcCCcEEEEEEcCC--CCEEEEEecCCeEEEEECCCC-ceeeeeecC-cceeEEEEeeCCCEEE
Q 002564 456 GISRGSYLDMSERSNYAHNGEVVGVACDST--NTLMISAGYHGDIKVWDFKGR-DLKSRWEVG-CSLVKIVYHRVNGLLA 531 (907)
Q Consensus 456 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~i~~~~~s~~~~~la 531 (907)
.++++.|-+. ...+++++.-+.+++||...+ +++..+... .+++++...|.+++++
T Consensus 204 --------------------W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy 263 (412)
T KOG3881|consen 204 --------------------WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIY 263 (412)
T ss_pred --------------------eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEE
Confidence 3455666665 778999999999999999865 466666654 8999999999999999
Q ss_pred EEeCCCeEEEEEcccceeEEE-eecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCC
Q 002564 532 TVADDLVIRLFDVVALRMVRK-FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPN 609 (907)
Q Consensus 532 ~~~~dg~I~v~d~~~~~~~~~-~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spd 609 (907)
+|..-+.+..||+++++.... +.|-.+.|+++..+|.+++|+++|.|..|||+|+++.+++......+.++++.+.++
T Consensus 264 ~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 264 TGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred EecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 999999999999999998877 889999999999999999999999999999999999888888877777888777654
No 234
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.58 E-value=8.6e-14 Score=142.14 Aligned_cols=95 Identities=15% Similarity=0.293 Sum_probs=88.1
Q ss_pred cCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEE
Q 002564 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR 551 (907)
Q Consensus 473 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~ 551 (907)
-.+.|..++|+|||++||+.+.||.+||+|+.+.+++...+.- +...|++|||||++|++|++|.-|.||.+..++++.
T Consensus 289 ~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 289 GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE
Confidence 3458999999999999999999999999999998887766543 889999999999999999999999999999999999
Q ss_pred EeecCCCCeeeEEECC
Q 002564 552 KFEGHTDRITDFCFSE 567 (907)
Q Consensus 552 ~~~~h~~~I~~l~fsp 567 (907)
.-+||...|+.++|.|
T Consensus 369 RGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccccccceeeEeecc
Confidence 9999999999999987
No 235
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.57 E-value=1e-13 Score=141.64 Aligned_cols=239 Identities=17% Similarity=0.340 Sum_probs=174.0
Q ss_pred eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEE-----cCCCCCCEEEEEecCCcEEEEecCCCeEEEE
Q 002564 102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIM-----HPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176 (907)
Q Consensus 102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~ 176 (907)
.|++|+-.- -..+.+|+...+.....++....+.......-.| .|.+ --+++|-..|.+++.|....+..+.
T Consensus 134 ~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g--~dllIGf~tGqvq~idp~~~~~skl 210 (636)
T KOG2394|consen 134 KGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKG--LDLLIGFTTGQVQLIDPINFEVSKL 210 (636)
T ss_pred CCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCC--cceEEeeccCceEEecchhhHHHHh
Confidence 367776643 4568899988765544445444443322222222 2334 3588888889999998755322221
Q ss_pred Ec----CCCCCEEEEEEcCCCC-EEEEEecCCeEEEEEccC--------------C--------------ceEEEEeecC
Q 002564 177 FK----GWGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRY--------------D--------------EELVTFTHSM 223 (907)
Q Consensus 177 ~~----~h~~~I~~l~~sp~~~-~la~g~~dg~I~iwd~~~--------------~--------------~~~~~~~~~~ 223 (907)
+. -....|+|+.|-|.++ .++++-.+|.+.+||... + .++..+...
T Consensus 211 fne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~- 289 (636)
T KOG2394|consen 211 FNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIG- 289 (636)
T ss_pred hhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEec-
Confidence 21 1257899999999654 566677889999997531 1 112222222
Q ss_pred CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC
Q 002564 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (907)
Q Consensus 224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 303 (907)
.+.|...+|+|||+ +||+.+.||.++|||..+.+++..++ ..-+...|++|+|||+++++|+.|--|.||.+...
T Consensus 290 ~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mk-SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er--- 364 (636)
T KOG2394|consen 290 EGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMK-SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER--- 364 (636)
T ss_pred cccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHH-hhccceEEEEEcCCccEEEecCCcceEEEEEeccc---
Confidence 46889999999999 99999999999999999999988887 77789999999999999999999999999988755
Q ss_pred cceeEeccCCCCCCeEEEEec-----------------------------------CC-------------CEEEEEeCC
Q 002564 304 PRLLRFRSGHSAPPLCIRFYA-----------------------------------NG-------------RHILSAGQD 335 (907)
Q Consensus 304 ~~~~~~~~~h~~~v~~i~~~~-----------------------------------~g-------------~~l~s~~~d 335 (907)
+++..-.+|...|..++|.| ++ -.|.+.+.|
T Consensus 365 -RVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqD 443 (636)
T KOG2394|consen 365 -RVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQD 443 (636)
T ss_pred -eEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeeccccc
Confidence 77778889999999999982 01 146688899
Q ss_pred CCEEEEEceecccce
Q 002564 336 RAFRLFSVIQDQQSR 350 (907)
Q Consensus 336 g~i~iwd~~~~~~~~ 350 (907)
..+.+||+..+....
T Consensus 444 TqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 444 TQLCLWDLTEDVLVP 458 (636)
T ss_pred ceEEEEecchhhccc
Confidence 999999997665433
No 236
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=7.2e-13 Score=136.51 Aligned_cols=275 Identities=12% Similarity=0.184 Sum_probs=197.4
Q ss_pred cCCcceeEEEcCCeEEEEEEe-CCeEEEEEcCcceEEEecCCCCcceEEEEEecCeE---EEEEcCeEEEEeCCee-EEE
Q 002564 14 TSSVPFSVQRLGTENFVTVSV-GKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYT---FAAYGNHIAVVKRAHQ-VAT 88 (907)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~---~~a~g~~I~vw~~~~~-~~~ 88 (907)
|+.+..+ ++++|+++++. --.|++||+.++.+.+..+-....|.-.-.+.|.. ++-....|.+-..... ..+
T Consensus 54 st~ik~s---~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~ 130 (703)
T KOG2321|consen 54 STRIKVS---PDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRT 130 (703)
T ss_pred cceeEec---CCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeee
Confidence 4555555 88888876665 77899999999999988754445555555666632 2222222433221111 111
Q ss_pred EcccccceEEEEeeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEec
Q 002564 89 WSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI 168 (907)
Q Consensus 89 ~~~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~ 168 (907)
-.+..+.=.+..--.--|+.++....|.-.+++.|.. +..+....+....|.+++-. .+|++|+.+|.|..||.
T Consensus 131 RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf----L~P~~~~~~~lN~v~in~~h--gLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF----LNPFETDSGELNVVSINEEH--GLLACGTEDGVVEFWDP 204 (703)
T ss_pred ecCcCCccccccCCCccEEEeecCcceEEEEcccccc----ccccccccccceeeeecCcc--ceEEecccCceEEEecc
Confidence 0011111111111122345555567799999999988 67777777888888899888 78999999999999999
Q ss_pred CCCeEEEEEc------CCCC-----CEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCC
Q 002564 169 STKKKLYEFK------GWGS-----SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237 (907)
Q Consensus 169 ~~~~~~~~~~------~h~~-----~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~ 237 (907)
++...+.++. .|.+ .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-.+...-+|..+.|.+.+.
T Consensus 205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence 8877666553 2333 4999999999999999999999999999999999888777677999999977632
Q ss_pred -CEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 002564 238 -PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (907)
Q Consensus 238 -~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~ 300 (907)
..+++. ....++|||-.+|+....+. ....+..+++.|++.+++++-.+..+..|-+...
T Consensus 285 q~~v~S~-Dk~~~kiWd~~~Gk~~asiE--pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 285 QNKVVSM-DKRILKIWDECTGKPMASIE--PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred CceEEec-chHHhhhcccccCCceeecc--ccCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 245544 46789999999999998887 4556999999999999999998887777755443
No 237
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=1.9e-13 Score=134.67 Aligned_cols=267 Identities=18% Similarity=0.281 Sum_probs=191.4
Q ss_pred CCCEEEEEEcCCCC--EEEEEecCCeEEEEEccCCceEEEE-----eecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEE
Q 002564 181 GSSISSCVSSPALD--VVAVGCSDGKIHVHNVRYDEELVTF-----THSMRGAVTALAFSSDGQPLLASGASSGVISIWN 253 (907)
Q Consensus 181 ~~~I~~l~~sp~~~--~la~g~~dg~I~iwd~~~~~~~~~~-----~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd 253 (907)
...|+.++|.-+++ .+...+.+..+..+........... .....++|..++.. || .|++|-.+|.+.+|.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg--~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG--TLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC--EEEEEecCCcEEEEe
Confidence 45677788876554 4444446666777666655544432 11124677777765 44 578888999999999
Q ss_pred CCCce----eeeeeecccccCeEEEEEecCCC-EEEEEcCC--CcEEEEEccCCCCCcceeEecc---C--CCCCCeEEE
Q 002564 254 LEKRR----LQSVIREAHDNAIISLHFFANEP-VLMSASAD--NSIKMWIFDTTDGDPRLLRFRS---G--HSAPPLCIR 321 (907)
Q Consensus 254 ~~~~~----~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d--~~i~vw~~~~~~~~~~~~~~~~---~--h~~~v~~i~ 321 (907)
.+.+. .+..+. ...++..+.-++..+ ++++||.. +.+++||+......+......+ + -.-.++.+.
T Consensus 132 ~k~~d~hss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred ccCCccccccceeee--cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 88542 222222 335667777777655 45558888 8899999876522111100000 0 112467888
Q ss_pred EecC--CCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCC
Q 002564 322 FYAN--GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT 399 (907)
Q Consensus 322 ~~~~--g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 399 (907)
|.+. ...|++++.-+.+|+||.+.++. |+..+++
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRR--------------------------PV~~fd~------------------ 245 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRR--------------------------PVAQFDF------------------ 245 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCc--------------------------ceeEecc------------------
Confidence 9886 78999999999999999875432 2222222
Q ss_pred ceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEE
Q 002564 400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVG 479 (907)
Q Consensus 400 ~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~ 479 (907)
...+++++...|+|+++++|...|.+..||+..+....... .+..+.|++
T Consensus 246 -----------------------~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~-------kg~tGsirs 295 (412)
T KOG3881|consen 246 -----------------------LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL-------KGITGSIRS 295 (412)
T ss_pred -----------------------ccCcceeeeecCCCcEEEEecccchhheecccCceeecccc-------CCccCCcce
Confidence 23789999999999999999999999999999999888743 488999999
Q ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeC
Q 002564 480 VACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRV 526 (907)
Q Consensus 480 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~ 526 (907)
+..+|.+++++++|.|..|||+|+++.+++........++++.+.++
T Consensus 296 ih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 296 IHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred EEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 99999999999999999999999999888888777788888777653
No 238
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.56 E-value=5.3e-09 Score=123.78 Aligned_cols=478 Identities=14% Similarity=0.106 Sum_probs=277.7
Q ss_pred cccceEEEEe--eCCEEEEEecCCcEEEE----ecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEE
Q 002564 92 HSAKVNLLLL--FGEHILSIDIDGNMFIW----AFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL 165 (907)
Q Consensus 92 h~~~V~~l~~--~g~~l~s~~~dg~v~vW----d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~i 165 (907)
..+.|.++.+ +...|+.+..+|.|.+. +..+... ..+.. -...+..++|+||. ..|+..+.+|++.+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~--E~VG~---vd~GI~a~~WSPD~--Ella~vT~~~~l~~ 146 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI--EIVGS---VDSGILAASWSPDE--ELLALVTGEGNLLL 146 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee--EEEEE---EcCcEEEEEECCCc--CEEEEEeCCCEEEE
Confidence 3467888875 67788888999999998 4433322 11222 34556788899999 88999999998887
Q ss_pred EecCCCeEEE------------------------EEcC------------------------CCCCEEEEEEcCCCCEEE
Q 002564 166 WNISTKKKLY------------------------EFKG------------------------WGSSISSCVSSPALDVVA 197 (907)
Q Consensus 166 wd~~~~~~~~------------------------~~~~------------------------h~~~I~~l~~sp~~~~la 197 (907)
.+ ++..++. .|+| +...-..++|-.||.++|
T Consensus 147 mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFA 225 (928)
T PF04762_consen 147 MT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFA 225 (928)
T ss_pred Ee-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEE
Confidence 64 2222221 1111 122446788999999999
Q ss_pred EEec---C---CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeC---CCcEEEEECCCceeeeeeec---
Q 002564 198 VGCS---D---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS---SGVISIWNLEKRRLQSVIRE--- 265 (907)
Q Consensus 198 ~g~~---d---g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~---dg~I~iwd~~~~~~~~~~~~--- 265 (907)
+.+- . ..++||+-+ |....+-. .-.+--.+++|.|.|. ++|+... ...|.+|.- +|-....+..
T Consensus 226 Vss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~ 301 (928)
T PF04762_consen 226 VSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFER-NGLRHGEFTLRFD 301 (928)
T ss_pred EEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEec-CCcEeeeEecCCC
Confidence 8874 2 579999965 55433333 3345567899999999 7777653 356777773 4433333321
Q ss_pred ccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEecc-CCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEc
Q 002564 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS-GHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV 343 (907)
Q Consensus 266 ~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~ 343 (907)
.....|..+.|++|+..|+....|. |.+|-.. +..+-+.+.+. .....+..+.|+| +...|...+.+|.+..++.
T Consensus 302 ~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~--NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 302 PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS--NYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCCceeeEEEECCCCCEEEEEecCC-ceEEEee--CCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 3466899999999999999987655 9999543 33333333332 2233455699999 5666777777787776654
Q ss_pred eecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCC
Q 002564 344 IQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPEN 423 (907)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~ 423 (907)
.-..... ..... .+.-.++--++..+.+-.+.............-..
T Consensus 379 ~~~v~~s--------------------------------~~~~~-~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~ 425 (928)
T PF04762_consen 379 AWDVSRS--------------------------------PGSSP-NDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL 425 (928)
T ss_pred EEEEEec--------------------------------CCCCc-cCceEEEEEeCCeEEEecccccCCCchHhceEEcC
Confidence 3211100 00000 01112233344455555554443322221111233
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccce--------eeecc--ccccccCcCCcEEEEEEcCCCCEEEEEe
Q 002564 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRG--------SYLDM--SERSNYAHNGEVVGVACDSTNTLMISAG 493 (907)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~--------~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~~ 493 (907)
+..|.+++|++++..+++-+.+|.+.+|......... .+... ...........+..++|..++..++...
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSD 505 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEe
Confidence 5789999999999999999999999999865443221 11100 0000012245678888888877766665
Q ss_pred cC---CeEEEEECCCCce---eee-eecCcceeEEEEeeCCCEEEEEeCCCeEEEEEccccee-EEEeecCCCCeeeEEE
Q 002564 494 YH---GDIKVWDFKGRDL---KSR-WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCF 565 (907)
Q Consensus 494 ~d---g~i~iwd~~~~~~---~~~-~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~-~~~~~~h~~~I~~l~f 565 (907)
.+ ..+.++++...+. ... ......+..+...++...++.-..+|.+..++...... +..|......+..+.+
T Consensus 506 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~ 585 (928)
T PF04762_consen 506 SDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQI 585 (928)
T ss_pred cCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEE
Confidence 54 6788888743322 122 22235555555555555577777788888666554322 2223222222222222
Q ss_pred CCCC--cEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564 566 SEDG--KWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (907)
Q Consensus 566 spdg--~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (907)
.... ..++.-+..|.+++ .++.+ ...|+++..+ +.+|+.+.... .+++..+.
T Consensus 586 ~~~~~~~~~~GLs~~~~Ly~----n~~~l-----a~~~tSF~v~--~~~Ll~TT~~h-~l~fv~L~ 639 (928)
T PF04762_consen 586 NGSEDKRVLFGLSSNGRLYA----NSRLL-----ASNCTSFAVT--DSFLLFTTTQH-TLKFVHLN 639 (928)
T ss_pred CCccceeEEEEECCCCEEEE----CCEEE-----ecCCceEEEE--cCEEEEEecCc-eEEEEECc
Confidence 2221 13333344444433 12222 3567888874 46666666655 47777765
No 239
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.1e-12 Score=144.34 Aligned_cols=236 Identities=13% Similarity=0.145 Sum_probs=156.9
Q ss_pred cEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEec---CCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCC
Q 002564 162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS---DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238 (907)
Q Consensus 162 ~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~---dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~ 238 (907)
.|.+||...... +.+..+...+.+.+|||||+.|+..+. +..|.+|++.+++....... .+.+.+.+|+|||+.
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~--~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF--PRHNGAPAFSPDGSK 256 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC--CCCcCCeEECCCCCE
Confidence 689999865443 444456778999999999999886542 35799999988764332221 344567899999994
Q ss_pred EEEEEeCCC--cEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcC-CCcEEEEEccCCCCCcceeEeccCCCC
Q 002564 239 LLASGASSG--VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSA 315 (907)
Q Consensus 239 ~l~sg~~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~ 315 (907)
++++.+.+| .|.+||+.+++...... +...+....|+|||+.|+.++. ++...+|.++..++..+.+ ..+..
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~lt~--~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l---t~~~~ 331 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQVTD--GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI---TWEGS 331 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEccC--CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe---ecCCC
Confidence 544545455 58999998887654433 4456789999999998877665 4567777666554433322 22334
Q ss_pred CCeEEEEecCCCEEEEEeCCC---CEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccce
Q 002564 316 PPLCIRFYANGRHILSAGQDR---AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV 392 (907)
Q Consensus 316 ~v~~i~~~~~g~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 392 (907)
......|+|||++++..+.++ .|.+||+.++... .+
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~L---------------------------------------- 370 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL---------------------------------------- 370 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-Ee----------------------------------------
Confidence 456789999999998766442 3566665443211 10
Q ss_pred EEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCc---EEEEeCCCCccceeeecccccc
Q 002564 393 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGW---IERFNLQSGISRGSYLDMSERS 469 (907)
Q Consensus 393 ~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~---i~i~d~~~~~~~~~~~~~~~~~ 469 (907)
.. . .......|+|||++++.++.++. +.++++. |.....+.
T Consensus 371 -------------------------t~--~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~------ 414 (429)
T PRK03629 371 -------------------------TD--T--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP------ 414 (429)
T ss_pred -------------------------CC--C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECc------
Confidence 00 0 11234679999999999887764 6677774 44444443
Q ss_pred ccCcCCcEEEEEEcC
Q 002564 470 NYAHNGEVVGVACDS 484 (907)
Q Consensus 470 ~~~h~~~v~~l~~s~ 484 (907)
+|.+.+...+|+|
T Consensus 415 --~~~~~~~~p~Wsp 427 (429)
T PRK03629 415 --ATDGQVKFPAWSP 427 (429)
T ss_pred --cCCCCcCCcccCC
Confidence 6778888888887
No 240
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.55 E-value=9.2e-12 Score=119.71 Aligned_cols=237 Identities=14% Similarity=0.230 Sum_probs=168.7
Q ss_pred EEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCC--CEEEEEEcCCCCEEE-EEecC------CeEEEEEccC
Q 002564 142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGS--SISSCVSSPALDVVA-VGCSD------GKIHVHNVRY 212 (907)
Q Consensus 142 ~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~--~I~~l~~sp~~~~la-~g~~d------g~I~iwd~~~ 212 (907)
++.|+-|. ..+++|..+| .+||+.+.-+.......+.+ .+.-|-|- .++|| +|+.+ ..+.|||-..
T Consensus 10 svs~NQD~--ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 10 SVSFNQDH--SCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred EEEEccCC--ceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEeccc
Confidence 36677777 7788888887 99999876544333222222 23333332 34554 44333 5799999777
Q ss_pred CceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECC-Cceeeeeeecc-cccCeEEEEEecCCCEEEEEc-CC
Q 002564 213 DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE-KRRLQSVIREA-HDNAIISLHFFANEPVLMSAS-AD 289 (907)
Q Consensus 213 ~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~-~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~~-~d 289 (907)
.+++.++... .+|.++.++++ .+++.- .+.|.||... +.+.++.+... ......+++-..+..+|+.-| .-
T Consensus 85 ~~~i~el~f~--~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 85 ERCIIELSFN--SEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred CcEEEEEEec--cceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 7788887764 89999999987 344443 5799999987 44666665521 233445554444445666544 36
Q ss_pred CcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCC-EEEEEceecccceeechhhhhHHHhhccchh
Q 002564 290 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA-FRLFSVIQDQQSRELSQRHVAKRARKLKMKE 368 (907)
Q Consensus 290 ~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (907)
|.|.+-++...... .-.....|...|.|++.+-+|..++|++..|+ ||+||..++....++..+.
T Consensus 159 GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~------------ 224 (346)
T KOG2111|consen 159 GQVQIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV------------ 224 (346)
T ss_pred ceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC------------
Confidence 89999988765431 22445699999999999999999999999998 5999999998888765421
Q ss_pred hhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcE
Q 002564 369 EELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWI 448 (907)
Q Consensus 369 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i 448 (907)
....+.+++|||++.++++.+..|++
T Consensus 225 ------------------------------------------------------d~A~iy~iaFSp~~s~LavsSdKgTl 250 (346)
T KOG2111|consen 225 ------------------------------------------------------DRADIYCIAFSPNSSWLAVSSDKGTL 250 (346)
T ss_pred ------------------------------------------------------chheEEEEEeCCCccEEEEEcCCCeE
Confidence 13679999999999999999999999
Q ss_pred EEEeCCCCc
Q 002564 449 ERFNLQSGI 457 (907)
Q Consensus 449 ~i~d~~~~~ 457 (907)
++|.+....
T Consensus 251 HiF~l~~~~ 259 (346)
T KOG2111|consen 251 HIFSLRDTE 259 (346)
T ss_pred EEEEeecCC
Confidence 999987643
No 241
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.55 E-value=7.3e-11 Score=126.34 Aligned_cols=306 Identities=15% Similarity=0.178 Sum_probs=198.3
Q ss_pred EEEEeCC----CcEEEEEC--CCceeeeeeecccccCeEEEEEecCCCEEEEEcC----CCcEEEEEccCCCCCcceeEe
Q 002564 240 LASGASS----GVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEPVLMSASA----DNSIKMWIFDTTDGDPRLLRF 309 (907)
Q Consensus 240 l~sg~~d----g~I~iwd~--~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~----d~~i~vw~~~~~~~~~~~~~~ 309 (907)
+++|+.. +.|.+|++ +++++...-..........++++|++++|.++.. ++.|..|.++..++....+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 3445544 68888887 5554433222234556788999999999998876 578999998876555555555
Q ss_pred ccCCCCCCeEEEEecCCCEEEEEe-CCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeeccccccc
Q 002564 310 RSGHSAPPLCIRFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERD 388 (907)
Q Consensus 310 ~~~h~~~v~~i~~~~~g~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 388 (907)
.......+..++++|++++|+++. .+|.+.++++...........
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~---------------------------------- 127 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQ---------------------------------- 127 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEE----------------------------------
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeee----------------------------------
Confidence 544556778899999999999886 589999999876432222110
Q ss_pred ccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCc--cce--eee
Q 002564 389 WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA-GGWIERFNLQSGI--SRG--SYL 463 (907)
Q Consensus 389 ~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-dg~i~i~d~~~~~--~~~--~~~ 463 (907)
++.... .-..+.........++.++|+|+++++... ...|.+|++.... ... .+.
T Consensus 128 ---------------~~~~~g-----~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~ 187 (345)
T PF10282_consen 128 ---------------TVRHEG-----SGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK 187 (345)
T ss_dssp ---------------EEESEE-----EESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE
T ss_pred ---------------ecccCC-----CCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc
Confidence 000000 000111223467889999999999888764 3589999987665 211 111
Q ss_pred ccccccccCcCCcEEEEEEcCCCCEEEEEe-cCCeEEEEECC--CCce--eeeeec-------CcceeEEEEeeCCCEEE
Q 002564 464 DMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFK--GRDL--KSRWEV-------GCSLVKIVYHRVNGLLA 531 (907)
Q Consensus 464 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~--~~~~--~~~~~~-------~~~i~~~~~s~~~~~la 531 (907)
.......+.++|+|++++++... .++.|.++++. ++.. +..+.. ......++++|||++|.
T Consensus 188 -------~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ly 260 (345)
T PF10282_consen 188 -------VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLY 260 (345)
T ss_dssp -------CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEE
T ss_pred -------cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEE
Confidence 24556789999999999886665 67889999988 4422 222221 12578899999999988
Q ss_pred EEeC-CCeEEEEEcc--cc--eeEEEeecCCCCeeeEEECCCCcEEEEEe-CCCcEEEEEc--CCCceeeEee--eCCce
Q 002564 532 TVAD-DLVIRLFDVV--AL--RMVRKFEGHTDRITDFCFSEDGKWLLSSG-MDGSLRIWDV--ILARQIDAIH--VDVSI 601 (907)
Q Consensus 532 ~~~~-dg~I~v~d~~--~~--~~~~~~~~h~~~I~~l~fspdg~~l~s~s-~Dg~I~vwd~--~~~~~~~~~~--~~~~v 601 (907)
++.. .+.|.+|++. ++ +.+..+.........++++|+|++|+++. .++.|.+|++ .+|.+...-. .-...
T Consensus 261 vsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p 340 (345)
T PF10282_consen 261 VSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSP 340 (345)
T ss_dssp EEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSE
T ss_pred EEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCC
Confidence 8764 5789999993 23 34445554445578999999999999877 5678999976 5676554432 12225
Q ss_pred EEEEE
Q 002564 602 TALSL 606 (907)
Q Consensus 602 ~~l~~ 606 (907)
.|+.|
T Consensus 341 ~ci~f 345 (345)
T PF10282_consen 341 VCIVF 345 (345)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 56655
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.54 E-value=2.8e-11 Score=129.53 Aligned_cols=281 Identities=15% Similarity=0.216 Sum_probs=186.1
Q ss_pred EEEEcCC----CcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeC----CCCEEEEEceec-ccceeec
Q 002564 283 LMSASAD----NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ----DRAFRLFSVIQD-QQSRELS 353 (907)
Q Consensus 283 l~s~~~d----~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~----dg~i~iwd~~~~-~~~~~~~ 353 (907)
++.|+.. +.|.+|+++..++....+... .....+..++++|++++|++... ++.|..|++... .....+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 3445544 789999998777655555442 34456678999999999998876 467777776654 1111111
Q ss_pred hhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEc
Q 002564 354 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS 433 (907)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s 433 (907)
. . . ........++++
T Consensus 81 ~-------------------------------------------------------------~-~---~~g~~p~~i~~~ 95 (345)
T PF10282_consen 81 S-------------------------------------------------------------V-P---SGGSSPCHIAVD 95 (345)
T ss_dssp E-------------------------------------------------------------E-E---ESSSCEEEEEEC
T ss_pred e-------------------------------------------------------------e-c---cCCCCcEEEEEe
Confidence 0 0 0 012556789999
Q ss_pred CCCCEEEEEe-CCCcEEEEeCCC-Cccceeeecc-----ccccccCcCCcEEEEEEcCCCCEEEEEe-cCCeEEEEECCC
Q 002564 434 ACGNFAVLGT-AGGWIERFNLQS-GISRGSYLDM-----SERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKG 505 (907)
Q Consensus 434 ~~g~~l~~g~-~dg~i~i~d~~~-~~~~~~~~~~-----~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~ 505 (907)
|++++++++. .+|.|.+|++.. |......... .............++.++|+++++++.. ....|.+|++..
T Consensus 96 ~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~ 175 (345)
T PF10282_consen 96 PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDD 175 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-T
T ss_pred cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 9999998886 589999999987 3333321100 0000012234578899999999888876 445899999976
Q ss_pred Cc--eee----eeecCcceeEEEEeeCCCEEEEEeC-CCeEEEEEcc--cce--eEEEeecC------CCCeeeEEECCC
Q 002564 506 RD--LKS----RWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVV--ALR--MVRKFEGH------TDRITDFCFSED 568 (907)
Q Consensus 506 ~~--~~~----~~~~~~~i~~~~~s~~~~~la~~~~-dg~I~v~d~~--~~~--~~~~~~~h------~~~I~~l~fspd 568 (907)
.. +.. .+........++|+|+++++.+..+ ++.|.++++. ++. .+..+... ......|+++||
T Consensus 176 ~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd 255 (345)
T PF10282_consen 176 DTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD 255 (345)
T ss_dssp TS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT
T ss_pred CCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC
Confidence 55 322 2344478899999999998877665 6789999998 443 33333221 125778999999
Q ss_pred CcEEEEEe-CCCcEEEEEcC--CCce--eeEeeeCC-ceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564 569 GKWLLSSG-MDGSLRIWDVI--LARQ--IDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (907)
Q Consensus 569 g~~l~s~s-~Dg~I~vwd~~--~~~~--~~~~~~~~-~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (907)
|++|.++. .+.+|.+|++. +|++ +..+.... ....++++|+|++|+++..+++.|.+|++.
T Consensus 256 g~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 256 GRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 99988665 56789999993 3443 34444433 389999999999999999888889999864
No 243
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=2.6e-12 Score=141.53 Aligned_cols=170 Identities=13% Similarity=0.051 Sum_probs=119.1
Q ss_pred eEEEEEcCCCCEEEEE-eCCC--cEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecC-Ce--EEE
Q 002564 427 VKACTISACGNFAVLG-TAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH-GD--IKV 500 (907)
Q Consensus 427 v~~~~~s~~g~~l~~g-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g~--i~i 500 (907)
....+|+|||+.++.. +.+| .|++||+.++...... .+...+....|+|+|+.|+..+.+ +. |.+
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt---------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~ 315 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT---------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYK 315 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc---------CCCCCcCceEECCCCCEEEEEeCCCCCceEEE
Confidence 4467999999988865 4445 5889999887654432 334567889999999988776653 44 555
Q ss_pred EECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCC---CeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeC
Q 002564 501 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577 (907)
Q Consensus 501 wd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d---g~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~ 577 (907)
+|+.+++...............|+|||++++..+.+ ..|.+||+.+++.. .+... .......|+|||++|+.++.
T Consensus 316 ~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 316 VNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred EECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEc
Confidence 577776554433333455678999999999887643 36889999888643 33322 23456789999999999887
Q ss_pred CCc---EEEEEcCCCceeeEeee-CCceEEEEECC
Q 002564 578 DGS---LRIWDVILARQIDAIHV-DVSITALSLSP 608 (907)
Q Consensus 578 Dg~---I~vwd~~~~~~~~~~~~-~~~v~~l~~sp 608 (907)
++. +.++++ +|.....+.. ...+...+|+|
T Consensus 394 ~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 394 QGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 764 677777 4665566654 34588889987
No 244
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=7.9e-12 Score=138.50 Aligned_cols=232 Identities=14% Similarity=0.054 Sum_probs=153.8
Q ss_pred cEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCC---CCEEEEEceecccceeechhhhhHHHhhccch
Q 002564 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 367 (907)
Q Consensus 291 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (907)
.|.+||.+.. . .+.+..+...+.+.+|+|||+.|+..+.+ ..|.+|++.+++....
T Consensus 185 ~l~i~D~~g~--~---~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l---------------- 243 (433)
T PRK04922 185 ALQVADSDGY--N---PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV---------------- 243 (433)
T ss_pred EEEEECCCCC--C---ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe----------------
Confidence 5777766432 2 22234566789999999999999987643 3577777754332110
Q ss_pred hhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEE-eCCC
Q 002564 368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-TAGG 446 (907)
Q Consensus 368 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-~~dg 446 (907)
. .......+..|+|+|+.++.. +.+|
T Consensus 244 --------------------------------------------------~---~~~g~~~~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 244 --------------------------------------------------A---SFRGINGAPSFSPDGRRLALTLSRDG 270 (433)
T ss_pred --------------------------------------------------c---cCCCCccCceECCCCCEEEEEEeCCC
Confidence 0 011334567999999987654 4555
Q ss_pred --cEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe-cCCe--EEEEECCCCceeeeeecCcceeEE
Q 002564 447 --WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGD--IKVWDFKGRDLKSRWEVGCSLVKI 521 (907)
Q Consensus 447 --~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~i~~~ 521 (907)
.|++||+.++..... ..+.......+|+|+|+.++.++ .+|. |.++|+.+++..............
T Consensus 271 ~~~Iy~~d~~~g~~~~l---------t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~ 341 (433)
T PRK04922 271 NPEIYVMDLGSRQLTRL---------TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARA 341 (433)
T ss_pred CceEEEEECCCCCeEEC---------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence 699999988765432 14444556789999999888766 3444 666777776654433333345578
Q ss_pred EEeeCCCEEEEEeCCC---eEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCC---CcEEEEEcCCCceeeEe
Q 002564 522 VYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILARQIDAI 595 (907)
Q Consensus 522 ~~s~~~~~la~~~~dg---~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D---g~I~vwd~~~~~~~~~~ 595 (907)
+|+|+|+.++..+.++ .|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|.++++. |.....+
T Consensus 342 ~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l 418 (433)
T PRK04922 342 SVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRL 418 (433)
T ss_pred EECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEc
Confidence 9999999998876443 6999999887754 343 33345678999999998876653 458888875 4455555
Q ss_pred ee-CCceEEEEECC
Q 002564 596 HV-DVSITALSLSP 608 (907)
Q Consensus 596 ~~-~~~v~~l~~sp 608 (907)
.. ...+...+|+|
T Consensus 419 ~~~~g~~~~p~wsp 432 (433)
T PRK04922 419 VSADGEVREPAWSP 432 (433)
T ss_pred ccCCCCCCCCccCC
Confidence 43 34577788876
No 245
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=6.8e-11 Score=116.76 Aligned_cols=272 Identities=14% Similarity=0.223 Sum_probs=187.6
Q ss_pred CCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCC---CCEEEEEceecccceeechhhhhHHHhhcc
Q 002564 289 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD---RAFRLFSVIQDQQSRELSQRHVAKRARKLK 365 (907)
Q Consensus 289 d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 365 (907)
+.-|.+|++++..+....+.. -.+.+.++-++|+|++++|+++..+ |.+..|.+....
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~-v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~------------------ 75 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQL-VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD------------------ 75 (346)
T ss_pred CCceEEEEEeCcccccchhhh-ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC------------------
Confidence 567999999977765444433 3677889999999999999988655 556655554320
Q ss_pred chhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe-C
Q 002564 366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT-A 444 (907)
Q Consensus 366 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~ 444 (907)
+.+..-+- ......+.+.++++++|++++++. .
T Consensus 76 ----------------------------------G~Lt~ln~------------~~~~g~~p~yvsvd~~g~~vf~AnY~ 109 (346)
T COG2706 76 ----------------------------------GRLTFLNR------------QTLPGSPPCYVSVDEDGRFVFVANYH 109 (346)
T ss_pred ----------------------------------CeEEEeec------------cccCCCCCeEEEECCCCCEEEEEEcc
Confidence 11111110 001113448899999999998875 5
Q ss_pred CCcEEEEeCCC-CccceeeeccccccccCcCCc----------EEEEEEcCCCCEEEEEe-cCCeEEEEECCCCceeee-
Q 002564 445 GGWIERFNLQS-GISRGSYLDMSERSNYAHNGE----------VVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSR- 511 (907)
Q Consensus 445 dg~i~i~d~~~-~~~~~~~~~~~~~~~~~h~~~----------v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~- 511 (907)
.|.|.++-++. |........ ..|.+. +....++|++++|++.+ .--.|.+|++..+++...
T Consensus 110 ~g~v~v~p~~~dG~l~~~v~~------~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~ 183 (346)
T COG2706 110 SGSVSVYPLQADGSLQPVVQV------VKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPAD 183 (346)
T ss_pred CceEEEEEcccCCccccceee------eecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccc
Confidence 68999999866 433322211 123333 77889999999999887 335799999998876543
Q ss_pred ---eecCcceeEEEEeeCCCEEEEEeC-CCeEEEEEcccc-eeEEEeec---------CCCCeeeEEECCCCcEEEEEeC
Q 002564 512 ---WEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVAL-RMVRKFEG---------HTDRITDFCFSEDGKWLLSSGM 577 (907)
Q Consensus 512 ---~~~~~~i~~~~~s~~~~~la~~~~-dg~I~v~d~~~~-~~~~~~~~---------h~~~I~~l~fspdg~~l~s~s~ 577 (907)
++.+.....+.|+|++++..+.++ +++|.+|..+.. ..+..++. -.....+|..+|||++|.++..
T Consensus 184 ~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR 263 (346)
T COG2706 184 PAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR 263 (346)
T ss_pred ccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC
Confidence 344578899999999999888776 789999998873 22222222 1245678899999999997642
Q ss_pred -CCcEEEEEcCC--Ccee--eEeeeCCc-eEEEEECCCCceEEEEEecCCeEEEeecccc
Q 002564 578 -DGSLRIWDVIL--ARQI--DAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRCM 631 (907)
Q Consensus 578 -Dg~I~vwd~~~--~~~~--~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~lW~~~~~ 631 (907)
...|.+|.+.. |++. .....+.. .....|+|+|++|++++.++..|.++.....
T Consensus 264 g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 264 GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 23688887754 3322 22222333 7899999999999999999988999987543
No 246
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.5e-12 Score=143.53 Aligned_cols=178 Identities=13% Similarity=0.123 Sum_probs=122.5
Q ss_pred CcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCC
Q 002564 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237 (907)
Q Consensus 161 g~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d---g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~ 237 (907)
..|.++|. +|.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +... .+.+.+.+|+|||+
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~-~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANF-KGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecC-CCCccceEECCCCC
Confidence 35777786 555555666778899999999999999877643 469999999887543 3222 35677899999998
Q ss_pred CEEEEEeCCCcEEEEE--CCCceeeeeeecccccCeEEEEEecCCCEEEEEcC-CCcEEEEEccCCCCCcceeEeccCCC
Q 002564 238 PLLASGASSGVISIWN--LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHS 314 (907)
Q Consensus 238 ~~l~sg~~dg~I~iwd--~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (907)
.++++.+.+|...||. +.++. ...+. .+........|+|||+.|+..+. ++...+|.++..++..+.+. .. .
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~--g 327 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSG-LRRLT-QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FT--G 327 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCC-cEECC-CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cC--C
Confidence 5555667777766664 54444 33444 45556677899999998876654 57788888775544333332 22 2
Q ss_pred CCCeEEEEecCCCEEEEEeCCC---CEEEEEceec
Q 002564 315 APPLCIRFYANGRHILSAGQDR---AFRLFSVIQD 346 (907)
Q Consensus 315 ~~v~~i~~~~~g~~l~s~~~dg---~i~iwd~~~~ 346 (907)
.......|+|||++++..+.++ .|.+||+.++
T Consensus 328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 2344678999999998777554 4777776543
No 247
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.51 E-value=3.1e-11 Score=123.23 Aligned_cols=335 Identities=15% Similarity=0.201 Sum_probs=218.4
Q ss_pred EEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEE
Q 002564 206 HVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 285 (907)
Q Consensus 206 ~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 285 (907)
.+|+..+...-..+.. ..-++...+|||.|. +|++... ..|.+|.-.....+..+. | ..|..+.|+|++++|.+
T Consensus 15 ~f~~~~s~~~~~~~~~-~~~p~~~~~~SP~G~-~l~~~~~-~~V~~~~g~~~~~l~~~~--~-~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 15 VFWNSQSEVIHTRFES-ENWPVAYVSESPLGT-YLFSEHA-AGVECWGGPSKAKLVRFR--H-PDVKYLDFSPNEKYLVT 88 (561)
T ss_pred EeecCccccccccccc-cCcchhheeecCcch-heehhhc-cceEEccccchhheeeee--c-CCceecccCcccceeee
Confidence 4555555554444443 256899999999999 6776554 569999988877665555 4 46899999999999998
Q ss_pred EcCC---------------CcEEEEEccCCCCCcceeEeccCCCCC--Ce-EEEEecCCCEEEEEeCCCCEEEEEceecc
Q 002564 286 ASAD---------------NSIKMWIFDTTDGDPRLLRFRSGHSAP--PL-CIRFYANGRHILSAGQDRAFRLFSVIQDQ 347 (907)
Q Consensus 286 ~~~d---------------~~i~vw~~~~~~~~~~~~~~~~~h~~~--v~-~i~~~~~g~~l~s~~~dg~i~iwd~~~~~ 347 (907)
=+.. +.+.+||+..+ .++..+.+...+ .. -+.|+-+.++++-. ....+.++++ ++.
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg----~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n 162 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASG----MIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDN 162 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCc----eeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCc
Confidence 6543 34889987655 566666665555 44 56777777666644 2335777775 221
Q ss_pred cceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCce
Q 002564 348 QSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV 427 (907)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v 427 (907)
.. ... .+.+ ....+
T Consensus 163 ~~-~~p------------------------------------------------------------~~~l-----r~~gi 176 (561)
T COG5354 163 IE-EHP------------------------------------------------------------FKNL-----RPVGI 176 (561)
T ss_pred cc-cCc------------------------------------------------------------hhhc-----cccce
Confidence 11 000 0000 01445
Q ss_pred EEEEEcCCCCE--EEE-----EeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe-------
Q 002564 428 KACTISACGNF--AVL-----GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG------- 493 (907)
Q Consensus 428 ~~~~~s~~g~~--l~~-----g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~------- 493 (907)
...+++|.|+. ++. +...+.+++|.+..+..+.... -....=..+.|.+.|++++.--
T Consensus 177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~--------lfk~~~~qLkW~~~g~~ll~l~~t~~ksn 248 (561)
T COG5354 177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN--------LFKVSGVQLKWQVLGKYLLVLVMTHTKSN 248 (561)
T ss_pred eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee--------eEeecccEEEEecCCceEEEEEEEeeecc
Confidence 56666665432 222 2355678888887665554432 1122223566777777665321
Q ss_pred ----cCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEe--CCCeEEEEEcccceeEEEeecCCCCeeeEEECC
Q 002564 494 ----YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVA--DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE 567 (907)
Q Consensus 494 ----~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~--~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp 567 (907)
....+.++++......-.....++|...+|.|.++.+++.+ .+..+.++|+... +. +......=+.+.|||
T Consensus 249 KsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp 325 (561)
T COG5354 249 KSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSP 325 (561)
T ss_pred cceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccC
Confidence 23568888887555444445579999999999988776654 6778999999866 33 333455667789999
Q ss_pred CCcEEEEEeCC---CcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEec-----CCeEEEeecc
Q 002564 568 DGKWLLSSGMD---GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD-----QNGVYLWVNR 629 (907)
Q Consensus 568 dg~~l~s~s~D---g~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d-----~~~i~lW~~~ 629 (907)
.++|++.++-| |.|-+||......+..--.....+-+.|+|||+|+-++... .++|.||++-
T Consensus 326 ~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 326 HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred cccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 99999998865 78999998755444422223346677899999998887532 2369999974
No 248
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2e-12 Score=143.28 Aligned_cols=178 Identities=16% Similarity=0.134 Sum_probs=122.9
Q ss_pred CcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCC
Q 002564 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237 (907)
Q Consensus 161 g~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d---g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~ 237 (907)
..|.+||.. +...+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +... .+...+.+|+|||+
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~-~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASF-RGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccC-CCCccCceECCCCC
Confidence 368999985 55555566677889999999999999987643 469999998876543 2222 34566889999999
Q ss_pred CEEEEEeCCC--cEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEc-CCCcEEEEEccCCCCCcceeEeccCCC
Q 002564 238 PLLASGASSG--VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHS 314 (907)
Q Consensus 238 ~~l~sg~~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (907)
.++++.+.+| .|.+||+.+++... +. .+.......+|+|||+.|+.++ .++...+|.++..++..+.+. .+.
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt-~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt---~~g 335 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTR-LT-NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT---FQG 335 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEE-Cc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee---cCC
Confidence 5555666555 59999998887543 33 4555567889999999888766 355656665554443323222 222
Q ss_pred CCCeEEEEecCCCEEEEEeCCC---CEEEEEceec
Q 002564 315 APPLCIRFYANGRHILSAGQDR---AFRLFSVIQD 346 (907)
Q Consensus 315 ~~v~~i~~~~~g~~l~s~~~dg---~i~iwd~~~~ 346 (907)
......+|+|||++++..+.++ .|.+|++.++
T Consensus 336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred CCccCEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence 3345789999999998765443 4777776543
No 249
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.50 E-value=2e-12 Score=125.18 Aligned_cols=247 Identities=17% Similarity=0.270 Sum_probs=183.1
Q ss_pred EEEEcccccceEEEE--eeCCEEEEEecCCcEEEEec-CCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCc
Q 002564 86 VATWSRHSAKVNLLL--LFGEHILSIDIDGNMFIWAF-KGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGS 162 (907)
Q Consensus 86 ~~~~~~h~~~V~~l~--~~g~~l~s~~~dg~v~vWd~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~ 162 (907)
+..++||.+.|.+.. +-...+++++.|.+++||-- +.++. .+.+... -+.......+++.. .+|++|-.+|+
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~-wpsI~~~--mP~~~~~~~y~~e~--~~L~vg~~ngt 91 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY-WPSIYHY--MPSPCSAMEYVSES--RRLYVGQDNGT 91 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccccc-Cchhhhh--CCCCceEeeeeccc--eEEEEEEecce
Confidence 344789988888755 46788999999999999954 44444 2222211 22334455577777 78999999999
Q ss_pred EEEEec----CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCC
Q 002564 163 LQLWNI----STKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238 (907)
Q Consensus 163 i~iwd~----~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~ 238 (907)
+.-+.+ +....++....|...|..+.|+-...++++.+.|..+.-.-.+.+..+..+... .+.+++.|.-.
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~--~~~t~~~~d~~--- 166 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE--TPASALQFDAL--- 166 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee--ccCCCCceeeE---
Confidence 988854 344556667789999999999999999999999988766666677665554432 22222222221
Q ss_pred EEEEEeCCCcEEEEECC--CceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCC
Q 002564 239 LLASGASSGVISIWNLE--KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAP 316 (907)
Q Consensus 239 ~l~sg~~dg~I~iwd~~--~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~ 316 (907)
+...|...|.|.+-.+. .-.++.++. +|.+.+.+++|.+...+|++|..|..+.+||+-...+ ......+|...
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~-~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g---~~~el~gh~~k 242 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFN-GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG---TAYELQGHNDK 242 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEc-CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc---eeeeeccchhh
Confidence 44556666666665543 446677777 9999999999999999999999999999999876654 34556799999
Q ss_pred CeEEEEecCCCEEEEEeCCCCEEEEEceec
Q 002564 317 PLCIRFYANGRHILSAGQDRAFRLFSVIQD 346 (907)
Q Consensus 317 v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~ 346 (907)
|..+.+.+--+.+++++.||.|.+|+....
T Consensus 243 V~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 243 VQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 999999998899999999999999998643
No 250
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.49 E-value=2.2e-12 Score=124.47 Aligned_cols=148 Identities=20% Similarity=0.349 Sum_probs=110.2
Q ss_pred EEEEEcCCCCEEEEEec----------CCeEEEEECC-CCceeeeeec--CcceeEEEEeeCCCEEEEEe--CCCeEEEE
Q 002564 478 VGVACDSTNTLMISAGY----------HGDIKVWDFK-GRDLKSRWEV--GCSLVKIVYHRVNGLLATVA--DDLVIRLF 542 (907)
Q Consensus 478 ~~l~~s~~~~~l~s~~~----------dg~i~iwd~~-~~~~~~~~~~--~~~i~~~~~s~~~~~la~~~--~dg~I~v~ 542 (907)
..+.|++.|.+|+.-.. -|...+|.++ .......+.. .++|.+++|+|+|+.+|+.. .++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45778888877664432 1334555552 2233444433 35799999999999876653 56799999
Q ss_pred EcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCC---CcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEec
Q 002564 543 DVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD---GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVD 619 (907)
Q Consensus 543 d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D---g~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d 619 (907)
|++ ++.+..+. ...++.+.|||+|++|++++.+ |.|.+||+.+.+.+....+. .++.++|||||++++++...
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTS 164 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEec
Confidence 997 66666664 5678899999999999998744 67999999999888887654 47899999999999999863
Q ss_pred -----CCeEEEeecc
Q 002564 620 -----QNGVYLWVNR 629 (907)
Q Consensus 620 -----~~~i~lW~~~ 629 (907)
.++++||+..
T Consensus 165 ~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQ 179 (194)
T ss_pred cceeccccEEEEEec
Confidence 2369999964
No 251
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=8.8e-12 Score=138.36 Aligned_cols=175 Identities=13% Similarity=0.118 Sum_probs=121.0
Q ss_pred CcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEec---CCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCC
Q 002564 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS---DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237 (907)
Q Consensus 161 g~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~---dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~ 237 (907)
..|.+||. .+...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+... .+.+.+.+|+|||+
T Consensus 182 ~~l~~~d~-dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~-~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQ-DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNF-PGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECC-CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecC-CCcccCcEECCCCC
Confidence 37889997 45555667778889999999999999887753 468999999888653 33332 46788999999998
Q ss_pred CEEEEEeCCCc--EEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcC-CCcEEEEEccCCCCCcceeEeccCCC
Q 002564 238 PLLASGASSGV--ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHS 314 (907)
Q Consensus 238 ~~l~sg~~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (907)
.++++.+.++. |.+||+.++.... +. .+........|+|||+.++..+. ++...+|.++...+..+.+. .+.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt---~~~ 333 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTR-LT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS---FGG 333 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEE-cc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee---cCC
Confidence 55566665554 7788998876544 43 45566778999999998887663 44444444443333222222 234
Q ss_pred CCCeEEEEecCCCEEEEEeCCC---CEEEEEc
Q 002564 315 APPLCIRFYANGRHILSAGQDR---AFRLFSV 343 (907)
Q Consensus 315 ~~v~~i~~~~~g~~l~s~~~dg---~i~iwd~ 343 (907)
..+....|+|+|+.|+..+.++ .|.+|++
T Consensus 334 ~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~ 365 (435)
T PRK05137 334 GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP 365 (435)
T ss_pred CcccCeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence 4566788999999998776432 3555554
No 252
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.3e-11 Score=136.25 Aligned_cols=239 Identities=13% Similarity=0.113 Sum_probs=154.9
Q ss_pred CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeC-C--CcEEEEECCCceeeeeeecccccCeEEEEEecC
Q 002564 203 GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS-S--GVISIWNLEKRRLQSVIREAHDNAIISLHFFAN 279 (907)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~-d--g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~ 279 (907)
..|.++|.. +.....+..+ ...+.+.+|+|||+ .|+..+. + ..|.+||+.+++..... ...+.+.+..|+||
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~-~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~l~--~~~g~~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSS-PEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRVVA--NFKGSNSAPAWSPD 250 (427)
T ss_pred cEEEEECCC-CCCceEeccC-CCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEEee--cCCCCccceEECCC
Confidence 457777764 4444444443 57899999999998 5555542 2 45999999988764332 24456678999999
Q ss_pred CCEEE-EEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeC-CCCEEEEEceecccceeechhhh
Q 002564 280 EPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHV 357 (907)
Q Consensus 280 ~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~ 357 (907)
|+.|+ +.+.++...+|.++...+. ...+..+........|+|||+.|+..+. +|...+|.+..
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~------------ 315 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSG---LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA------------ 315 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC---cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC------------
Confidence 98776 5677888888887765433 2233345555667789999888776553 34444544321
Q ss_pred hHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCC
Q 002564 358 AKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGN 437 (907)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 437 (907)
T Consensus 316 -------------------------------------------------------------------------------- 315 (427)
T PRK02889 316 -------------------------------------------------------------------------------- 315 (427)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCC---eEEEEECCCCceeeeeec
Q 002564 438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHG---DIKVWDFKGRDLKSRWEV 514 (907)
Q Consensus 438 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~ 514 (907)
.++...... .+.......+|+|+|++++..+.++ .|.+||+.+++..... .
T Consensus 316 ----------------~~g~~~~lt---------~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~ 369 (427)
T PRK02889 316 ----------------SGGAAQRVT---------FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-D 369 (427)
T ss_pred ----------------CCCceEEEe---------cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-C
Confidence 111100000 0011122457888888887766544 6999999888755433 2
Q ss_pred CcceeEEEEeeCCCEEEEEeCCC---eEEEEEcccceeEEEeecCCCCeeeEEECCC
Q 002564 515 GCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSED 568 (907)
Q Consensus 515 ~~~i~~~~~s~~~~~la~~~~dg---~I~v~d~~~~~~~~~~~~h~~~I~~l~fspd 568 (907)
........|+|||+.|+.++.++ .+.+.+. +++..+.+..+.+.+...+|+|-
T Consensus 370 ~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 370 TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 33456789999999988887654 4666666 46666777777788888899874
No 253
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.48 E-value=5.8e-12 Score=122.12 Aligned_cols=335 Identities=15% Similarity=0.198 Sum_probs=219.8
Q ss_pred eEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEc-cCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEE
Q 002564 172 KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNV-RYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS 250 (907)
Q Consensus 172 ~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~-~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~ 250 (907)
..++.++||...|+....-|...-+++.+.|.+++||-- ..++.-..+.+....+++++.+.++.. .|++|-..|++.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtvt 93 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceEE
Confidence 345677899999999888888888999999999999953 455555555555568999999999988 899999999999
Q ss_pred EEECCC----ceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCC
Q 002564 251 IWNLEK----RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 326 (907)
Q Consensus 251 iwd~~~----~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g 326 (907)
-+.+.. ....+... .|...|..+-|+-....+++.+.|..+.---.+.+........ ....+++.+.-.
T Consensus 94 efs~sedfnkm~~~r~~~-~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-----~~~~t~~~~d~~- 166 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYL-AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-----ETPASALQFDAL- 166 (404)
T ss_pred EEEhhhhhhhcchhhhhh-hhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-----eccCCCCceeeE-
Confidence 887643 34444454 8999999999998888999999987764322222211111100 011111111111
Q ss_pred CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEE
Q 002564 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 406 (907)
Q Consensus 327 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~ 406 (907)
+.+.|...|.+....+....
T Consensus 167 -~~fvGd~~gqvt~lr~~~~~----------------------------------------------------------- 186 (404)
T KOG1409|consen 167 -YAFVGDHSGQITMLKLEQNG----------------------------------------------------------- 186 (404)
T ss_pred -EEEecccccceEEEEEeecC-----------------------------------------------------------
Confidence 33344444444443332111
Q ss_pred eeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC
Q 002564 407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486 (907)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 486 (907)
-..+....+|...+++++|.+....+++|..|..+.+||+.......... .+|...|..+...+.-
T Consensus 187 -------~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el-------~gh~~kV~~l~~~~~t 252 (404)
T KOG1409|consen 187 -------CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL-------QGHNDKVQALSYAQHT 252 (404)
T ss_pred -------CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee-------ccchhhhhhhhhhhhh
Confidence 11122233567899999999999999999999999999998766655544 5899999999998888
Q ss_pred CEEEEEecCCeEEEEECCCCceeee------------------------------eecC----cceeEEEEeeCCCEEEE
Q 002564 487 TLMISAGYHGDIKVWDFKGRDLKSR------------------------------WEVG----CSLVKIVYHRVNGLLAT 532 (907)
Q Consensus 487 ~~l~s~~~dg~i~iwd~~~~~~~~~------------------------------~~~~----~~i~~~~~s~~~~~la~ 532 (907)
+.+++++.||.|-+|+++....... ..++ +...+...+.+.....+
T Consensus 253 ~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~ 332 (404)
T KOG1409|consen 253 RQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPT 332 (404)
T ss_pred eeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccc
Confidence 9999999999999999875421100 0000 11111111111111222
Q ss_pred EeCCCeEEEEEccc-------ceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCC
Q 002564 533 VADDLVIRLFDVVA-------LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588 (907)
Q Consensus 533 ~~~dg~I~v~d~~~-------~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~ 588 (907)
-+..-.+|+-|.-- ...+..+..-...|+.+.+..+-.+|+|++.|..|+|||+..
T Consensus 333 mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 333 MGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred ccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 22233445444211 122444433335699999988888999999999999999863
No 254
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.48 E-value=3.3e-10 Score=117.37 Aligned_cols=277 Identities=9% Similarity=0.001 Sum_probs=180.1
Q ss_pred CcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEec----------CCeEEEEEccCCceEEEEeecCC------
Q 002564 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS----------DGKIHVHNVRYDEELVTFTHSMR------ 224 (907)
Q Consensus 161 g~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~----------dg~I~iwd~~~~~~~~~~~~~~~------ 224 (907)
++|.+.|..+++.+..+..-..+- .+ +|||++.|+++.. +..|.+||..+.+.+..+..+.+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 889999999999999887533333 34 9999998887765 68999999999999998886422
Q ss_pred CCEEEEEEecCCCCEEEEEe-C-CCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCC
Q 002564 225 GAVTALAFSSDGQPLLASGA-S-SGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 302 (907)
Q Consensus 225 ~~v~~l~fs~dg~~~l~sg~-~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~ 302 (907)
.....++++|||+ +|++.. . +..|.+.|+.+++.+..+.. .++..-...+++. .+ +-+.||......++....
T Consensus 105 ~~~~~~~ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 105 TYPWMTSLTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTANDT-FF-MHCRDGSLAKVGYGTKGN 179 (352)
T ss_pred CccceEEECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCCc-cE-EEeecCceEEEEecCCCc
Confidence 1334889999999 555444 4 79999999999999998872 2222222222222 22 223355555544433221
Q ss_pred CcceeEecc-CCC--CCC-eEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCcee
Q 002564 303 DPRLLRFRS-GHS--APP-LCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 377 (907)
Q Consensus 303 ~~~~~~~~~-~h~--~~v-~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 377 (907)
.. ..... .+. .++ ..-.|.+ +|++++.... |.|.+.|+........
T Consensus 180 -~~-~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~-------------------------- 230 (352)
T TIGR02658 180 -PK-IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL-------------------------- 230 (352)
T ss_pred -eE-EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec--------------------------
Confidence 11 11110 111 000 0004566 7877777666 9999999654332111
Q ss_pred EeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe----------CCCc
Q 002564 378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT----------AGGW 447 (907)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~----------~dg~ 447 (907)
..|...+......- -.+....-++++++|+.+++.. ..+.
T Consensus 231 -------------------------~~~~~~~~~~~~~~-----wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~ 280 (352)
T TIGR02658 231 -------------------------PAIEAFTEAEKADG-----WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF 280 (352)
T ss_pred -------------------------ceeeeccccccccc-----cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE
Confidence 01111100000000 0124444599999999998853 2247
Q ss_pred EEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCC-EEEEEe-cCCeEEEEECCCCceeeee
Q 002564 448 IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISAG-YHGDIKVWDFKGRDLKSRW 512 (907)
Q Consensus 448 i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~ 512 (907)
|.++|..+++....+. -...+.+++++||++ +|++.. .++.|.+.|..+++.+..+
T Consensus 281 V~ViD~~t~kvi~~i~---------vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 281 LFVVDAKTGKRLRKIE---------LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEECCCCeEEEEEe---------CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 9999999999998875 245789999999999 777666 6788999999999998887
No 255
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2e-11 Score=135.52 Aligned_cols=232 Identities=15% Similarity=0.131 Sum_probs=155.0
Q ss_pred cEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeC---CCCEEEEEceecccceeechhhhhHHHhhccch
Q 002564 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ---DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 367 (907)
Q Consensus 291 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (907)
.|.+||.+.. . .+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.++.... +
T Consensus 183 ~l~~~d~dg~--~---~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l--------------- 241 (435)
T PRK05137 183 RLAIMDQDGA--N---VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-V--------------- 241 (435)
T ss_pred EEEEECCCCC--C---cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-e---------------
Confidence 5666655432 2 2334467788999999999999887753 3568888875543211 0
Q ss_pred hhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEE-EeCCC
Q 002564 368 EEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVL-GTAGG 446 (907)
Q Consensus 368 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-g~~dg 446 (907)
. .....+...+|+|||+.++. .+.+|
T Consensus 242 --------------------------------------------------~---~~~g~~~~~~~SPDG~~la~~~~~~g 268 (435)
T PRK05137 242 --------------------------------------------------G---NFPGMTFAPRFSPDGRKVVMSLSQGG 268 (435)
T ss_pred --------------------------------------------------e---cCCCcccCcEECCCCCEEEEEEecCC
Confidence 0 11245567899999998764 44455
Q ss_pred --cEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEec-CC--eEEEEECCCCceeeeeecCcceeEE
Q 002564 447 --WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIKVWDFKGRDLKSRWEVGCSLVKI 521 (907)
Q Consensus 447 --~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~i~~~ 521 (907)
.|++||+.++.... + ..+........|+|||+.++..+. +| .|.+||+.+++..........+...
T Consensus 269 ~~~Iy~~d~~~~~~~~-L--------t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~ 339 (435)
T PRK05137 269 NTDIYTMDLRSGTTTR-L--------TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTP 339 (435)
T ss_pred CceEEEEECCCCceEE-c--------cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCe
Confidence 47788988776543 2 245555677899999998887663 33 6888898877665544444556778
Q ss_pred EEeeCCCEEEEEeCC---CeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCC------CcEEEEEcCCCcee
Q 002564 522 VYHRVNGLLATVADD---LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD------GSLRIWDVILARQI 592 (907)
Q Consensus 522 ~~s~~~~~la~~~~d---g~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D------g~I~vwd~~~~~~~ 592 (907)
.|+|+|+.|+....+ ..|.+||+.++.. +.+. +...+....|+|||++|+..+.+ ..+.++|+..+..
T Consensus 340 ~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~- 416 (435)
T PRK05137 340 VWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE- 416 (435)
T ss_pred EECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-
Confidence 899999999887653 3688889865543 3333 23357788999999998866543 2577888765544
Q ss_pred eEeeeCCceEEEEECC
Q 002564 593 DAIHVDVSITALSLSP 608 (907)
Q Consensus 593 ~~~~~~~~v~~l~~sp 608 (907)
..+.....+...+|+|
T Consensus 417 ~~l~~~~~~~~p~Wsp 432 (435)
T PRK05137 417 REVPTPGDASDPAWSP 432 (435)
T ss_pred EEccCCCCccCcccCC
Confidence 4444444467777876
No 256
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.47 E-value=4.8e-12 Score=122.05 Aligned_cols=158 Identities=18% Similarity=0.270 Sum_probs=116.7
Q ss_pred eEEEEEcCCCCEEEEEeC----------CCcEEEEeCCC-CccceeeeccccccccCcCCcEEEEEEcCCCCEEEEE--e
Q 002564 427 VKACTISACGNFAVLGTA----------GGWIERFNLQS-GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA--G 493 (907)
Q Consensus 427 v~~~~~s~~g~~l~~g~~----------dg~i~i~d~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~--~ 493 (907)
-..+.|+++|++|++-.. -|...+|.+.. +.....+. ....++|.+++|+|+|+.+++. .
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~-------l~~~~~I~~~~WsP~g~~favi~g~ 80 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE-------LKKEGPIHDVAWSPNGNEFAVIYGS 80 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee-------ccCCCceEEEEECcCCCEEEEEEcc
Confidence 356789999988876544 13445555522 22222222 1345679999999999887554 3
Q ss_pred cCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeC---CCeEEEEEcccceeEEEeecCCCCeeeEEECCCCc
Q 002564 494 YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD---DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK 570 (907)
Q Consensus 494 ~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~---dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~ 570 (907)
.++.|.+||++ ++.+..+. ...+..+.|+|+|+++++++. .|.+.+||+++.+.+..+. |. .++.++|||||+
T Consensus 81 ~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr 156 (194)
T PF08662_consen 81 MPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGR 156 (194)
T ss_pred CCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCC
Confidence 67899999996 56666554 467789999999999999874 4679999999999888776 33 478999999999
Q ss_pred EEEEEeC------CCcEEEEEcCCCceeeEee
Q 002564 571 WLLSSGM------DGSLRIWDVILARQIDAIH 596 (907)
Q Consensus 571 ~l~s~s~------Dg~I~vwd~~~~~~~~~~~ 596 (907)
+|++++. |..++||+.. |+++....
T Consensus 157 ~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 157 YLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred EEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 9998864 7889999985 77766544
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.46 E-value=7.2e-10 Score=114.83 Aligned_cols=270 Identities=13% Similarity=0.112 Sum_probs=176.7
Q ss_pred CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEe---------CCCcEEEEECCCceeeeeeeccc------
Q 002564 203 GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGA---------SSGVISIWNLEKRRLQSVIREAH------ 267 (907)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~---------~dg~I~iwd~~~~~~~~~~~~~h------ 267 (907)
++|.+.|..+++.+.++..+.. ...+ ++|||+.+.++.+ .+..|.+||..+.+.+..+..+-
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~--P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL--PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC--Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 8999999999999999987622 2335 9999995555666 68899999999999998887321
Q ss_pred ccCeEEEEEecCCCEEEEEc-C-CCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEE--------eCCCC
Q 002564 268 DNAIISLHFFANEPVLMSAS-A-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA--------GQDRA 337 (907)
Q Consensus 268 ~~~V~~l~~~~~~~~l~s~~-~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~--------~~dg~ 337 (907)
......++++|||++|+... . ++.|.+.|+... +.+....- |++..++.. +.||.
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~----kvv~ei~v-----------p~~~~vy~t~e~~~~~~~~Dg~ 168 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK----AFVRMMDV-----------PDCYHIFPTANDTFFMHCRDGS 168 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCC----cEEEEEeC-----------CCCcEEEEecCCccEEEeecCc
Confidence 22344889999999888766 3 789999988765 34433322 333333333 23444
Q ss_pred EEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceee
Q 002564 338 FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHIL 417 (907)
Q Consensus 338 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~ 417 (907)
.....+........ ....+++... ...
T Consensus 169 ~~~v~~d~~g~~~~------------------------------------------------~~~~vf~~~~----~~v- 195 (352)
T TIGR02658 169 LAKVGYGTKGNPKI------------------------------------------------KPTEVFHPED----EYL- 195 (352)
T ss_pred eEEEEecCCCceEE------------------------------------------------eeeeeecCCc----ccc-
Confidence 33332222111000 0000000000 000
Q ss_pred ecCCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcc-----ceeeeccccccccCcCCcEEEEEEcCCCCEEEE
Q 002564 418 RPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQSGIS-----RGSYLDMSERSNYAHNGEVVGVACDSTNTLMIS 491 (907)
Q Consensus 418 ~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 491 (907)
.. .+ .+++ +|+++.+.+. |.|.+.|+..... ...+.. ......-..+.+..++++++++.++.
T Consensus 196 ---~~--rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~-~~~~~~wrP~g~q~ia~~~dg~~lyV 264 (352)
T TIGR02658 196 ---IN--HP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE-AEKADGWRPGGWQQVAYHRARDRIYL 264 (352)
T ss_pred ---cc--CC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccc-cccccccCCCcceeEEEcCCCCEEEE
Confidence 00 11 3355 8888888877 9999999644322 221110 00000123445556999999988887
Q ss_pred Ee----------cCCeEEEEECCCCceeeeeecCcceeEEEEeeCCC-EEEEEe-CCCeEEEEEcccceeEEEee
Q 002564 492 AG----------YHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLATVA-DDLVIRLFDVVALRMVRKFE 554 (907)
Q Consensus 492 ~~----------~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~-~la~~~-~dg~I~v~d~~~~~~~~~~~ 554 (907)
.. ..+.|.++|..+++.+..+.....+..++++||++ +|++.. .++.|.++|..+++.++++.
T Consensus 265 ~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 265 LADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 43 22579999999999999999999999999999999 877776 57889999999999999873
No 258
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=5.3e-11 Score=122.46 Aligned_cols=328 Identities=10% Similarity=0.102 Sum_probs=205.3
Q ss_pred EEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEE
Q 002564 163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLAS 242 (907)
Q Consensus 163 i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~s 242 (907)
...||.........-....-.-+-+.|||.|.||++--..| |.+|--.+-..++.|.+. .|.-+.|||..+ +|++
T Consensus 192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp---~Vq~idfSP~Ek-YLVT 266 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP---GVQFIDFSPNEK-YLVT 266 (698)
T ss_pred EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC---CceeeecCCccc-eEEE
Confidence 45677544322211111123346789999999999987765 889987777777777654 599999999998 7887
Q ss_pred EeC-----------CCcEEEEECCCceeeeeeecc-cccC-eEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEe
Q 002564 243 GAS-----------SGVISIWNLEKRRLQSVIREA-HDNA-IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF 309 (907)
Q Consensus 243 g~~-----------dg~I~iwd~~~~~~~~~~~~~-h~~~-V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~ 309 (907)
-+. ...++|||+.+|.....+... .... -.-..||.|++++|.-.. ++|.|++... ..++..
T Consensus 267 ~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtps----f~lld~ 341 (698)
T KOG2314|consen 267 YSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPS----FMLLDK 341 (698)
T ss_pred ecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCc----eeeecc
Confidence 652 257999999999988887721 1122 234689999999998876 5788885332 233333
Q ss_pred ccCCCCCCeEEEEecCCCEEEEEeCC-----CCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeeccc
Q 002564 310 RSGHSAPPLCIRFYANGRHILSAGQD-----RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 384 (907)
Q Consensus 310 ~~~h~~~v~~i~~~~~g~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (907)
..-....|....|+|.++.|+.-... ..+.+..+.+.+.++.
T Consensus 342 Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt--------------------------------- 388 (698)
T KOG2314|consen 342 KSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRT--------------------------------- 388 (698)
T ss_pred cccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeee---------------------------------
Confidence 33445678888999987766643211 1122222222111111
Q ss_pred ccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe----------CCCcEEEEeCC
Q 002564 385 RERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT----------AGGWIERFNLQ 454 (907)
Q Consensus 385 ~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~----------~dg~i~i~d~~ 454 (907)
..+++ -.=..+.|-.+|.+|++-. .-.++.||.+.
T Consensus 389 -----------------~nlfn------------------VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir 433 (698)
T KOG2314|consen 389 -----------------KNLFN------------------VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR 433 (698)
T ss_pred -----------------cccee------------------eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEee
Confidence 00111 1112234555666665431 12245666665
Q ss_pred CCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEec---CCeEEEEECCC-C---ceeeeeecCcceeEEEEeeCC
Q 002564 455 SGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY---HGDIKVWDFKG-R---DLKSRWEVGCSLVKIVYHRVN 527 (907)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~iwd~~~-~---~~~~~~~~~~~i~~~~~s~~~ 527 (907)
.....-... .-...|...+|.|.|..+++-+. ..++.+|.+.+ . +++..+.. ...+.+.|+|.|
T Consensus 434 eKdIpve~v--------elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG 504 (698)
T KOG2314|consen 434 EKDIPVEVV--------ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKG 504 (698)
T ss_pred ccCCCceee--------ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCC
Confidence 443322221 45677899999999987766543 35788898773 2 23333333 567889999999
Q ss_pred CEEEEE---eCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeC
Q 002564 528 GLLATV---ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577 (907)
Q Consensus 528 ~~la~~---~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~ 577 (907)
++++++ +..|.+..+|+.-..+...-.......+.+.|.|.|+|+++++.
T Consensus 505 ~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 505 RFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred cEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence 988876 45789999998743332222222234678899999999999875
No 259
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.45 E-value=2.2e-08 Score=118.63 Aligned_cols=474 Identities=11% Similarity=0.090 Sum_probs=273.1
Q ss_pred cCCeEEEEEEeCCeEEEE----EcCcceEEEecCCCCcceEEEEEecCeEEEE--EcC-eEEEEeC--------------
Q 002564 24 LGTENFVTVSVGKAFHIY----NCAKLNLVLVGPQLPKKIRALASYRDYTFAA--YGN-HIAVVKR-------------- 82 (907)
Q Consensus 24 ~~~~~~~~~~~~~~v~iw----d~~~~~~~~~~~~~~~~I~~la~~~~~~~~a--~g~-~I~vw~~-------------- 82 (907)
.+.+.++++..+|-|.++ |........++ ..+..|.|++||||+..+| +|. ++.+-.+
T Consensus 85 ~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG-~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~ 163 (928)
T PF04762_consen 85 ADSESLCIALASGDIILVREDPDPDEDEIEIVG-SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDD 163 (928)
T ss_pred cCCCcEEEEECCceEEEEEccCCCCCceeEEEE-EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccc
Confidence 567788888889999999 76666655555 4588999999999966654 444 3333210
Q ss_pred -----------CeeEEEEcc------------------------cccceEEEEe--eCCEEEEEec---C---CcEEEEe
Q 002564 83 -----------AHQVATWSR------------------------HSAKVNLLLL--FGEHILSIDI---D---GNMFIWA 119 (907)
Q Consensus 83 -----------~~~~~~~~~------------------------h~~~V~~l~~--~g~~l~s~~~---d---g~v~vWd 119 (907)
|++.-+|.| +...-..|+| ||.++|+.+. . ..++||+
T Consensus 164 ~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ 243 (928)
T PF04762_consen 164 FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS 243 (928)
T ss_pred cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC
Confidence 111111221 2223345666 8999988775 3 3599999
Q ss_pred cCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEec---CCcEEEEecCCCeEEEEEc----CCCCCEEEEEEcCC
Q 002564 120 FKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQ---EGSLQLWNISTKKKLYEFK----GWGSSISSCVSSPA 192 (907)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~----~h~~~I~~l~~sp~ 192 (907)
.+ |.+ ..+-+.-.+.....+|.|.| +.|++... ...|.+|. ++|-.-..|. .....|..+.|+++
T Consensus 244 Re-G~L----~stSE~v~gLe~~l~WrPsG--~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~d 315 (928)
T PF04762_consen 244 RE-GEL----QSTSEPVDGLEGALSWRPSG--NLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSD 315 (928)
T ss_pred CC-ceE----EeccccCCCccCCccCCCCC--CEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCC
Confidence 87 433 22222234445677899999 88888754 34566676 4555444443 34678999999999
Q ss_pred CCEEEEEecCCeEEEEEccCCce--EEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccC
Q 002564 193 LDVVAVGCSDGKIHVHNVRYDEE--LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA 270 (907)
Q Consensus 193 ~~~la~g~~dg~I~iwd~~~~~~--~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~ 270 (907)
+.+||+...|. |.+|-..+..- .+.+.......+..+.|+|.....|...+.+|.+..+++.-........
T Consensus 316 s~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~------ 388 (928)
T PF04762_consen 316 SEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS------ 388 (928)
T ss_pred CCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC------
Confidence 99999988765 99999887653 2333333234566699999887678888877888777652111111000
Q ss_pred eEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccc
Q 002564 271 IISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS 349 (907)
Q Consensus 271 V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~ 349 (907)
.|+.. .+++. ....+++-.+....-.|..-...-....+|.+++|++++..+++-..||.+.+|........
T Consensus 389 ------~~~D~g~vaVI-DG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~ 461 (928)
T PF04762_consen 389 ------SPNDNGTVAVI-DGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMW 461 (928)
T ss_pred ------CccCceEEEEE-eCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcc
Confidence 11111 12222 22345555555443332222222244678999999999888999999999999986543221
Q ss_pred eeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEE
Q 002564 350 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA 429 (907)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~ 429 (907)
.. ..+...... ... .............+..
T Consensus 462 ~~-~~~~~~~~~--------------------------------------------~~~-----~~~~~~~~~~~~~~~~ 491 (928)
T PF04762_consen 462 SV-KPPKLLSSI--------------------------------------------SLD-----SMDISDSELPLGSLRQ 491 (928)
T ss_pred cc-cCcchhhhc--------------------------------------------ccc-----cccccccccccccEEE
Confidence 10 000000000 000 0000000111256777
Q ss_pred EEEcCCCCEEEEEeCC---CcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 002564 430 CTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 506 (907)
Q Consensus 430 ~~~s~~g~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 506 (907)
++|..+...+++...+ +.+.+++............ ...-.+.+..+...+....++.-..+|.+...+....
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 492 LAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVES-----STEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGE 566 (928)
T ss_pred EEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEE-----EeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCC
Confidence 8888877777666654 5777887744332211110 0123445555555555554666677888886665543
Q ss_pred cee-eeeecCcceeEEEEeeCCC--EEEEE-eCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEE
Q 002564 507 DLK-SRWEVGCSLVKIVYHRVNG--LLATV-ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR 582 (907)
Q Consensus 507 ~~~-~~~~~~~~i~~~~~s~~~~--~la~~-~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~ 582 (907)
... ..+....+-..++...+.. .++.| +..|.+++ .++.+. ..+++++++ +.+|+.......++
T Consensus 567 ~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la------~~~tSF~v~--~~~Ll~TT~~h~l~ 634 (928)
T PF04762_consen 567 LSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA------SNCTSFAVT--DSFLLFTTTQHTLK 634 (928)
T ss_pred ccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEe------cCCceEEEE--cCEEEEEecCceEE
Confidence 222 2233333333333333333 23444 44454443 222222 567777775 45777777788899
Q ss_pred EEEcC
Q 002564 583 IWDVI 587 (907)
Q Consensus 583 vwd~~ 587 (907)
+.++.
T Consensus 635 fv~L~ 639 (928)
T PF04762_consen 635 FVHLN 639 (928)
T ss_pred EEECc
Confidence 99988
No 260
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=3.7e-10 Score=119.46 Aligned_cols=501 Identities=11% Similarity=0.109 Sum_probs=296.2
Q ss_pred EcCCeEEEEEEeCCeEEEEEcCcce----E-----------EEecCCCCcceEEEEEecCeEEEEEcCe---EEEEeCCe
Q 002564 23 RLGTENFVTVSVGKAFHIYNCAKLN----L-----------VLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRAH 84 (907)
Q Consensus 23 ~~~~~~~~~~~~~~~v~iwd~~~~~----~-----------~~~~~~~~~~I~~la~~~~~~~~a~g~~---I~vw~~~~ 84 (907)
....+++++++.||.+.|..+.+.. . -....+|...|.-+.|..+.+-+.+.++ |.||-.-+
T Consensus 23 Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlyk 102 (1189)
T KOG2041|consen 23 NKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYK 102 (1189)
T ss_pred cccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeec
Confidence 3568899999999999999876421 1 1133689999999999988777766544 99996433
Q ss_pred e--EE--EEcccccceEEEEe--eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEe
Q 002564 85 Q--VA--TWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGS 158 (907)
Q Consensus 85 ~--~~--~~~~h~~~V~~l~~--~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s 158 (907)
. .. .-....+.|.++.| +|..++.+-.||.|.|=.++........++ ......+.+++|. ..++.+-
T Consensus 103 gsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk-----g~~l~hv~ws~D~--~~~Lf~~ 175 (1189)
T KOG2041|consen 103 GSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK-----GQLLAHVLWSEDL--EQALFKK 175 (1189)
T ss_pred ccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc-----hheccceeecccH--HHHHhhh
Confidence 2 11 12334667888887 799999999999998888877665322221 2223467889988 6788888
Q ss_pred cCCcEEEEecCCC-------eEEE----EEcCCCCCEEEEEEc--------CCCCEEEEEecCCeEEEEEccCCceEEEE
Q 002564 159 QEGSLQLWNISTK-------KKLY----EFKGWGSSISSCVSS--------PALDVVAVGCSDGKIHVHNVRYDEELVTF 219 (907)
Q Consensus 159 ~dg~i~iwd~~~~-------~~~~----~~~~h~~~I~~l~~s--------p~~~~la~g~~dg~I~iwd~~~~~~~~~~ 219 (907)
.+|.+.++|.... .+.. .+......|-.+.|. |+...+|++..+|.+.|-.-.++.....+
T Consensus 176 ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~ 255 (1189)
T KOG2041|consen 176 ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV 255 (1189)
T ss_pred cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE
Confidence 8999999986432 1111 122223345555553 57789999999999999877766655555
Q ss_pred eecCCCCEEEEEEecCCCCEEEEEeCC---------CcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCC
Q 002564 220 THSMRGAVTALAFSSDGQPLLASGASS---------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN 290 (907)
Q Consensus 220 ~~~~~~~v~~l~fs~dg~~~l~sg~~d---------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~ 290 (907)
..+ -.+..+.|+++|. +||+++.+ +.|.+|. .-|+.+.+++ .....|++++|-..|-.++.+- |+
T Consensus 256 dtg--m~~vgakWnh~G~-vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlk-vpg~~It~lsWEg~gLriA~Av-ds 329 (1189)
T KOG2041|consen 256 DTG--MKIVGAKWNHNGA-VLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLK-VPGSCITGLSWEGTGLRIAIAV-DS 329 (1189)
T ss_pred ecc--cEeecceecCCCc-EEEEccCcccccCccccceEEEec-cchhheEEEe-cCCceeeeeEEcCCceEEEEEe-cc
Confidence 543 6799999999999 88888754 2455555 4567777777 6778999999987776666554 66
Q ss_pred cEEEEEccCCCC----CcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccc
Q 002564 291 SIKMWIFDTTDG----DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKM 366 (907)
Q Consensus 291 ~i~vw~~~~~~~----~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 366 (907)
.|.+=+++..-. ....+....+...+-.+ |.+||..+++.......+...-..
T Consensus 330 fiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~------------------i~Fwdtk~nek~vK~V~~~~~~a~----- 386 (1189)
T KOG2041|consen 330 FIYFANIRPEYKWGYIEETVVYVYQKEELPQYG------------------IMFWDTKTNEKTVKTVTHFENMAF----- 386 (1189)
T ss_pred eEEEEeecccceEEEeeeEEEEEEccCCCcceE------------------EEEEecccChhhhhhhcceeehhe-----
Confidence 776655443210 00111111222222223 333333332211110000000000
Q ss_pred hhhhcccCceeEeeecccccccccceEEEeeCCceE----------EEEEeeec-eecceeeecCCCCCCceEEEEEcCC
Q 002564 367 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQA----------YVWRLQNF-VLGEHILRPCPENPTAVKACTISAC 435 (907)
Q Consensus 367 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v----------~~w~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~ 435 (907)
+ .+ -.++....+++.+ ++|-+.-. .+| .+.+..-..|.-.-..-+
T Consensus 387 ---------------~----~e-hCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIG----T~lD~kytdirP~Fv~vn 442 (1189)
T KOG2041|consen 387 ---------------Y----RE-HCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIG----TSLDYKYTDIRPKFVCVN 442 (1189)
T ss_pred ---------------e----cc-cEEEEeccccCCCcchhhhhcccceEEEeeecccC----CcCCCCcceeeeeEEEec
Confidence 0 00 0000000000000 00000000 000 000000111222222223
Q ss_pred CCEEEEEeCCCcEEEEeCCCCccceeeec------------------------cccccccCcCCcEEEEEEcCCCCEEEE
Q 002564 436 GNFAVLGTAGGWIERFNLQSGISRGSYLD------------------------MSERSNYAHNGEVVGVACDSTNTLMIS 491 (907)
Q Consensus 436 g~~l~~g~~dg~i~i~d~~~~~~~~~~~~------------------------~~~~~~~~h~~~v~~l~~s~~~~~l~s 491 (907)
|.++++++.+ .+.+|.....+....+.. .......+..++|..++.+ .++++.
T Consensus 443 ~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~v 519 (1189)
T KOG2041|consen 443 GICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMV 519 (1189)
T ss_pred ceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEE
Confidence 4455555443 345554322211111000 0001224566788888876 468899
Q ss_pred EecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcc---cceeEE-EeecCCCCeeeEEECC
Q 002564 492 AGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVV---ALRMVR-KFEGHTDRITDFCFSE 567 (907)
Q Consensus 492 ~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~---~~~~~~-~~~~h~~~I~~l~fsp 567 (907)
+-..|.|.-+.+.+.-+...+.....+.++...-+...+|+..--|.+.+.|+. ++..+. .+......|.++.|..
T Consensus 520 areSG~I~rySl~nv~l~n~y~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~ 599 (1189)
T KOG2041|consen 520 ARESGGIYRYSLNNVVLTNSYPVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQ 599 (1189)
T ss_pred EeccCceEEEEecceeeeeccccCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhcc
Confidence 999999999999999999999889999999999989999988888889888876 333333 3444556799999998
Q ss_pred CCcEEEEEeCCCcEEEEEc
Q 002564 568 DGKWLLSSGMDGSLRIWDV 586 (907)
Q Consensus 568 dg~~l~s~s~Dg~I~vwd~ 586 (907)
|+..|..--....+.|++-
T Consensus 600 dNp~llAlmeKtrmyifrg 618 (1189)
T KOG2041|consen 600 DNPNLLALMEKTRMYIFRG 618 (1189)
T ss_pred CCchHHhhhhhceEEEecC
Confidence 8876665444445666653
No 261
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=1.7e-09 Score=106.96 Aligned_cols=302 Identities=13% Similarity=0.149 Sum_probs=201.1
Q ss_pred CCcEEEEECCCc--eeeeeeecccccCeEEEEEecCCCEEEEEcC---CCcEEEEEccCCCCCcceeEeccCCCCCCeEE
Q 002564 246 SGVISIWNLEKR--RLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320 (907)
Q Consensus 246 dg~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i 320 (907)
+.-|.+|++.+. +........+.+.++-|+|+|++++|.++.. +|.|..|.++..++....+........+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 577999998733 3222222357788999999999999888754 58899999988766656665555555667999
Q ss_pred EEecCCCEEEEEeC-CCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCC
Q 002564 321 RFYANGRHILSAGQ-DRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT 399 (907)
Q Consensus 321 ~~~~~g~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 399 (907)
+++++|++++++.. -|.|.++-+..........+ . ..|.+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~------------------------~--------------~~h~g- 135 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQ------------------------V--------------VKHTG- 135 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCcccccee------------------------e--------------eecCC-
Confidence 99999999998864 47888888765433222111 0 00000
Q ss_pred ceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCC-CcEEEEeCCCCccceeeeccccccccCcCCcEE
Q 002564 400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 478 (907)
Q Consensus 400 ~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~ 478 (907)
.. ...++....+....++|+++++++.+-. -.|.+|++..|.....-... -.-....+
T Consensus 136 --------------~~--p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~-----v~~G~GPR 194 (346)
T COG2706 136 --------------SG--PHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE-----VKPGAGPR 194 (346)
T ss_pred --------------CC--CCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc-----cCCCCCcc
Confidence 00 0011122447888999999999887644 58999999977665433210 13345678
Q ss_pred EEEEcCCCCEEEEEe-cCCeEEEEECCCC-ceeeee----------ecCcceeEEEEeeCCCEEEEEeC-CCeEEEEEcc
Q 002564 479 GVACDSTNTLMISAG-YHGDIKVWDFKGR-DLKSRW----------EVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVV 545 (907)
Q Consensus 479 ~l~~s~~~~~l~s~~-~dg~i~iwd~~~~-~~~~~~----------~~~~~i~~~~~s~~~~~la~~~~-dg~I~v~d~~ 545 (907)
.|+|+|++++..... .+++|-+|.++.. .....+ ........+.+++||++|.++.. ...|.+|.+.
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 999999999887666 7899999998873 112111 22367788999999999998765 2378888765
Q ss_pred c--cee--EEEeecCCCCeeeEEECCCCcEEEEEeCC-CcEEEEEcC--CCceeeEeee-C-CceEEEEEC
Q 002564 546 A--LRM--VRKFEGHTDRITDFCFSEDGKWLLSSGMD-GSLRIWDVI--LARQIDAIHV-D-VSITALSLS 607 (907)
Q Consensus 546 ~--~~~--~~~~~~h~~~I~~l~fspdg~~l~s~s~D-g~I~vwd~~--~~~~~~~~~~-~-~~v~~l~~s 607 (907)
. +++ +.....+...-.+..|+|+|++|+++..+ .+|.+|.+. +|++-..... . ....|+.|.
T Consensus 275 ~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 275 PDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 3 332 23333344557889999999999988865 468888664 5665443331 1 125566553
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.39 E-value=7e-11 Score=123.46 Aligned_cols=194 Identities=17% Similarity=0.257 Sum_probs=151.8
Q ss_pred CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEE-------------------EEcCCCCCCEEEEEecCCcE
Q 002564 103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTC-------------------IMHPDTYLNKVIVGSQEGSL 163 (907)
Q Consensus 103 g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~p~~~~~~l~~~s~dg~i 163 (907)
+.++|....||.+++||...++............+..+... -.+.++ ..++.|...|.|
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t--~~lvlgt~~g~v 82 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDT--SMLVLGTPQGSV 82 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCc--eEEEeecCCccE
Confidence 56778888888888888887766321111111111111110 012233 568889999999
Q ss_pred EEEecCCCeEEEEEc--CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEE
Q 002564 164 QLWNISTKKKLYEFK--GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA 241 (907)
Q Consensus 164 ~iwd~~~~~~~~~~~--~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~ 241 (907)
.+|++..|+..+.+. .|.+.|+++.++.+-..|.+++.|+.+..|+...++.++.+... +..+.+++.+|||. +++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~-~~~~~sl~is~D~~-~l~ 160 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ-KPLVSSLCISPDGK-ILL 160 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-CCccceEEEcCCCC-EEE
Confidence 999999999998886 68999999999999999999999999999999999999988877 67899999999998 888
Q ss_pred EEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecC-----CCEEEE-EcCCCcEEEEEccCCCCC
Q 002564 242 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN-----EPVLMS-ASADNSIKMWIFDTTDGD 303 (907)
Q Consensus 242 sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~-----~~~l~s-~~~d~~i~vw~~~~~~~~ 303 (907)
+++ +.|++||+++++.+..+. +|.++|.++.|..+ |.++++ ...+.-+.+|-.+.....
T Consensus 161 ~as--~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kk 225 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKK 225 (541)
T ss_pred ecc--ceEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEccccc
Confidence 876 789999999999999999 99999999999887 555554 455777889987765433
No 263
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.34 E-value=7.8e-11 Score=114.27 Aligned_cols=292 Identities=12% Similarity=0.171 Sum_probs=185.7
Q ss_pred cccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCC-CCcceeEeccCCC------------CCCeEEEEecC--CCEEEE
Q 002564 267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD-GDPRLLRFRSGHS------------APPLCIRFYAN--GRHILS 331 (907)
Q Consensus 267 h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~-~~~~~~~~~~~h~------------~~v~~i~~~~~--g~~l~s 331 (907)
...-|.++.|...|.+|++|..+|.|.++.-+... +.......+..|. ..|..++|.++ ...++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 44578899999999999999999999998543322 2333444444443 46889999984 457788
Q ss_pred EeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeece
Q 002564 332 AGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFV 411 (907)
Q Consensus 332 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~ 411 (907)
.+.|.+|++|.+.......+-.. ... ..-......+++|.+...+. .+.+
T Consensus 104 stNdktiKlWKi~er~~k~~~~~--~~~--~~~~~~~~~lr~p~~~~~~~----------~vea---------------- 153 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYN--LPE--EGPPGTITSLRLPVEGRHDL----------EVEA---------------- 153 (433)
T ss_pred ecCCcceeeeeeecccccccccc--ccc--cCCCCccceeeceeeccccc----------eeee----------------
Confidence 89999999999875443321000 000 00000000111111111100 0000
Q ss_pred ecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-CEEE
Q 002564 412 LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMI 490 (907)
Q Consensus 412 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~ 490 (907)
.........|...+.++.++.|+..++++ .|=.|-+|++.-......+....+..+..-..-|++..|+|.. ..++
T Consensus 154 --~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~ 230 (433)
T KOG1354|consen 154 --SPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFV 230 (433)
T ss_pred --eeeeeccccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEE
Confidence 01111123566789999999999988876 5678999998754444333322222222223457888899954 6777
Q ss_pred EEecCCeEEEEECCCCcee----eeee-------------cCcceeEEEEeeCCCEEEEEeCCCeEEEEEc-ccceeEEE
Q 002564 491 SAGYHGDIKVWDFKGRDLK----SRWE-------------VGCSLVKIVYHRVNGLLATVADDLVIRLFDV-VALRMVRK 552 (907)
Q Consensus 491 s~~~dg~i~iwd~~~~~~~----~~~~-------------~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~-~~~~~~~~ 552 (907)
-++..|+|++-|++...+. ..+. .-..|..+.|+++|+++++-.. -+|++||+ ...+++.+
T Consensus 231 YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t 309 (433)
T KOG1354|consen 231 YSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVET 309 (433)
T ss_pred EecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceE
Confidence 7788899999999843221 1111 0167889999999999987643 68999999 45677777
Q ss_pred eecCC------------CCe---eeEEECCCCcEEEEEeCCCcEEEEEcCCCcee
Q 002564 553 FEGHT------------DRI---TDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 592 (907)
Q Consensus 553 ~~~h~------------~~I---~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~ 592 (907)
++-|. +.| ..++||.++.+++||+.....+++++..|...
T Consensus 310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcce
Confidence 76653 223 34789999999999999999999997766543
No 264
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=2.1e-09 Score=110.97 Aligned_cols=321 Identities=11% Similarity=0.132 Sum_probs=201.8
Q ss_pred cEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEec-----------CCeEEEEE
Q 002564 141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCS-----------DGKIHVHN 209 (907)
Q Consensus 141 ~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~-----------dg~I~iwd 209 (907)
.-+.|+|.| .+|++--..| |.+|--++...++.|.. ..|.-+.|||..+||++-+. ...++|||
T Consensus 214 tyv~wSP~G--TYL~t~Hk~G-I~lWGG~~f~r~~RF~H--p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 214 TYVRWSPKG--TYLVTFHKQG-IALWGGESFDRIQRFYH--PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeEEecCCc--eEEEEEeccc-eeeecCccHHHHHhccC--CCceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 345699999 8999998877 99998777677777652 46889999999999998642 25799999
Q ss_pred ccCCceEEEEeecCCC--CEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEc
Q 002564 210 VRYDEELVTFTHSMRG--AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS 287 (907)
Q Consensus 210 ~~~~~~~~~~~~~~~~--~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~ 287 (907)
+.+|.....|...... .-.-..||.|++ ++|--.. ..|.||+..+..++..-. -.-..|....|+|.+++||.=.
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdK-y~Arm~~-~sisIyEtpsf~lld~Ks-lki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDK-YFARMTG-NSISIYETPSFMLLDKKS-LKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCc-eeEEecc-ceEEEEecCceeeecccc-cCCccccCcccCCCcceEEEEc
Confidence 9999999888763111 223467999999 6765554 579999987755443333 3456789999999988777543
Q ss_pred CC-----CcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHh
Q 002564 288 AD-----NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRAR 362 (907)
Q Consensus 288 ~d-----~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 362 (907)
.. ..+.+-.+... +.+++.+-|.-.=..+.|-.+|.+|+.--.- ....+....
T Consensus 366 pe~~~~parvtL~evPs~----~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR-------~tK~~~~g~----------- 423 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSK----REIRTKNLFNVSDCKLHWQKSGDYLCVKVDR-------HTKSKVKGQ----------- 423 (698)
T ss_pred ccccCCcceEEEEecCcc----ceeeeccceeeeccEEEeccCCcEEEEEEEe-------eccccccce-----------
Confidence 21 12333333222 3445444444444455666677777642110 000000000
Q ss_pred hccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEE
Q 002564 363 KLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG 442 (907)
Q Consensus 363 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g 442 (907)
-..+.++.+....+....+. -...+...+|.|.|+.+++-
T Consensus 424 ------------------------------------f~n~eIfrireKdIpve~ve----lke~vi~FaWEP~gdkF~vi 463 (698)
T KOG2314|consen 424 ------------------------------------FSNLEIFRIREKDIPVEVVE----LKESVIAFAWEPHGDKFAVI 463 (698)
T ss_pred ------------------------------------EeeEEEEEeeccCCCceeee----cchheeeeeeccCCCeEEEE
Confidence 00111222222222111111 12678899999999877665
Q ss_pred eC---CCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe---cCCeEEEEECCCCceeee-eecC
Q 002564 443 TA---GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG---YHGDIKVWDFKGRDLKSR-WEVG 515 (907)
Q Consensus 443 ~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~-~~~~ 515 (907)
+. ..++.+|.+.+......+.. .-.....+.+.|+|.|++++.++ ..|.+.++|..-..+..+ ...+
T Consensus 464 ~g~~~k~tvsfY~~e~~~~~~~lVk------~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh 537 (698)
T KOG2314|consen 464 SGNTVKNTVSFYAVETNIKKPSLVK------ELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH 537 (698)
T ss_pred EccccccceeEEEeecCCCchhhhh------hhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc
Confidence 43 35788888774222211110 12235678899999999998775 568899999885332222 2233
Q ss_pred cceeEEEEeeCCCEEEEEeCCC
Q 002564 516 CSLVKIVYHRVNGLLATVADDL 537 (907)
Q Consensus 516 ~~i~~~~~s~~~~~la~~~~dg 537 (907)
...+.+.|.|.|+++++++.-.
T Consensus 538 ~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 538 FAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred cccccceECCCCCEEEEeeehh
Confidence 6678899999999999987643
No 265
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.33 E-value=1.3e-09 Score=119.28 Aligned_cols=300 Identities=12% Similarity=0.090 Sum_probs=187.1
Q ss_pred CEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEE
Q 002564 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231 (907)
Q Consensus 152 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~ 231 (907)
+++++++.+|.|..+|..+|+.+..+........... .++..+++++.+|.+..+|..+|+.+.+.... +.+.+..
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~p 141 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS--SEVLSPP 141 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC--ceeecCC
Confidence 5799999999999999999999988765433222222 24678888999999999999999988776643 3333222
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCe-----EEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcce
Q 002564 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI-----ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRL 306 (907)
Q Consensus 232 fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V-----~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~ 306 (907)
...++ .++.++.+|.|..||.++|+.+.... .....+ .+.... + ..++.+..++.+..+|...+...++.
T Consensus 142 ~v~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 142 LVANG--LVVVRTNDGRLTALDAATGERLWTYS-RVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred EEECC--EEEEECCCCeEEEEEcCCCceeeEEc-cCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeee
Confidence 22233 46667789999999999998877765 221111 111121 2 36777778888888876554322111
Q ss_pred eEe-ccCCCC--CCeEEEEec--CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeee
Q 002564 307 LRF-RSGHSA--PPLCIRFYA--NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 381 (907)
Q Consensus 307 ~~~-~~~h~~--~v~~i~~~~--~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 381 (907)
... ..+... ....+.-.| .+..++.++.+|.+..||..+++..
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~-------------------------------- 264 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVL-------------------------------- 264 (377)
T ss_pred ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEE--------------------------------
Confidence 000 000000 000010111 3457888888999999987655432
Q ss_pred cccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccee
Q 002564 382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS 461 (907)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~ 461 (907)
|.... ..... ....+..+++++.+|.++.+|..+|+.+..
T Consensus 265 -----------------------W~~~~---------------~~~~~--p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~ 304 (377)
T TIGR03300 265 -----------------------WKRDA---------------SSYQG--PAVDDNRLYVTDADGVVVALDRRSGSELWK 304 (377)
T ss_pred -----------------------Eeecc---------------CCccC--ceEeCCEEEEECCCCeEEEEECCCCcEEEc
Confidence 22210 00011 112467888888999999999999987765
Q ss_pred eeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCc-ceeEEEEeeCCCEEEEEeCCCeEE
Q 002564 462 YLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGC-SLVKIVYHRVNGLLATVADDLVIR 540 (907)
Q Consensus 462 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~i~~~~~s~~~~~la~~~~dg~I~ 540 (907)
... ........... .+..+++++.+|.|.++|..+++.+..++.+. .+..--...+ +.|++++.||.|+
T Consensus 305 ~~~-------~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~ 374 (377)
T TIGR03300 305 NDE-------LKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLY 374 (377)
T ss_pred ccc-------ccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEE
Confidence 421 11111222222 35688899999999999999999998887654 3332222233 4588888999887
Q ss_pred EE
Q 002564 541 LF 542 (907)
Q Consensus 541 v~ 542 (907)
.|
T Consensus 375 ~~ 376 (377)
T TIGR03300 375 AF 376 (377)
T ss_pred Ee
Confidence 65
No 266
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=4.1e-10 Score=124.63 Aligned_cols=172 Identities=16% Similarity=0.168 Sum_probs=112.8
Q ss_pred cEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCC
Q 002564 162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238 (907)
Q Consensus 162 ~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d---g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~ 238 (907)
.|.++|..... .+.+..+...+.+..|||||+.|+..+.+ ..|.+||+.+++... +... .+.....+|+|||+.
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~-~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSF-PGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCC-CCCcCCeeECCCCCE
Confidence 57777864443 34555567789999999999988876543 368889998876533 2221 344567899999995
Q ss_pred EEEEEeCCCc--EEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEc-CCCcEEEEEccCCCCCcceeEeccCCCC
Q 002564 239 LLASGASSGV--ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGHSA 315 (907)
Q Consensus 239 ~l~sg~~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h~~ 315 (907)
++++.+.+|. |.++|+.+++.... . .+........|+||++.++..+ .++...+|.++..++..+.+. ..++
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~l-t-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~-- 350 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRI-T-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGE-- 350 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEEC-c-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCC--
Confidence 5556666665 88889888765443 3 3555667889999999776655 356666666665444333332 2222
Q ss_pred CCeEEEEecCCCEEEEEeC-CCCEEEE
Q 002564 316 PPLCIRFYANGRHILSAGQ-DRAFRLF 341 (907)
Q Consensus 316 ~v~~i~~~~~g~~l~s~~~-dg~i~iw 341 (907)
.....+|+|||++++..+. ++...+|
T Consensus 351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 351 QNLGGSITPDGRSMIMVNRTNGKFNIA 377 (448)
T ss_pred CCcCeeECCCCCEEEEEEecCCceEEE
Confidence 2345689999999887654 3433443
No 267
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.31 E-value=3.5e-10 Score=125.99 Aligned_cols=177 Identities=16% Similarity=0.133 Sum_probs=120.2
Q ss_pred CcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCC
Q 002564 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237 (907)
Q Consensus 161 g~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d---g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~ 237 (907)
..|.++|.. +...+.+..+...+...+|+|+|++|+.+... ..|.+||+.+++...... . .+.+.+++|+|||+
T Consensus 170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~-~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-F-PGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-C-CCCccceEECCCCC
Confidence 368888875 44445555667789999999999999987654 479999999886543322 2 45677899999998
Q ss_pred CEEEEEeCCC--cEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcC-CCcEEEEEccCCCCCcceeEeccCCC
Q 002564 238 PLLASGASSG--VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHS 314 (907)
Q Consensus 238 ~~l~sg~~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~ 314 (907)
.++++.+.++ .|.+||+.++...... .+........|+|+++.|+.++. ++...+|.++..++... .+..+.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~---~l~~~~ 321 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLT--NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR---RLTFRG 321 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECC--CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE---EeecCC
Confidence 5555555444 5899999887654333 34455567899999998876554 44444544443333222 222344
Q ss_pred CCCeEEEEecCCCEEEEEeCCC---CEEEEEcee
Q 002564 315 APPLCIRFYANGRHILSAGQDR---AFRLFSVIQ 345 (907)
Q Consensus 315 ~~v~~i~~~~~g~~l~s~~~dg---~i~iwd~~~ 345 (907)
.......|+|+|++++.++.++ .|.+||+.+
T Consensus 322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred CCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 5667889999999999887765 566666543
No 268
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.30 E-value=4.2e-10 Score=125.37 Aligned_cols=207 Identities=14% Similarity=0.047 Sum_probs=144.3
Q ss_pred CceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCccceeeeccccccccCcCC
Q 002564 399 TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNG 475 (907)
Q Consensus 399 ~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~ 475 (907)
...+.++|...... ..+. .+...+...+|+|+|++++..... ..|++|++.++...... .+.+
T Consensus 169 ~~~l~~~d~~g~~~--~~l~---~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~---------~~~~ 234 (417)
T TIGR02800 169 RYELQVADYDGANP--QTIT---RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA---------SFPG 234 (417)
T ss_pred cceEEEEcCCCCCC--EEee---cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee---------cCCC
Confidence 34566666543221 1111 223467888999999999887654 47999999887654322 3455
Q ss_pred cEEEEEEcCCCCEEEE-EecCC--eEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCC-C--eEEEEEccccee
Q 002564 476 EVVGVACDSTNTLMIS-AGYHG--DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--VIRLFDVVALRM 549 (907)
Q Consensus 476 ~v~~l~~s~~~~~l~s-~~~dg--~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d-g--~I~v~d~~~~~~ 549 (907)
.+.+++|+|+++.|+. .+.++ .|.+||+.+++...............|+|+++.|+..+.. + .|+++|+.+++.
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~ 314 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV 314 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 6677899999987764 44444 5889999887665544444445577899999988776653 2 688888887664
Q ss_pred EEEeecCCCCeeeEEECCCCcEEEEEeCCC---cEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCC
Q 002564 550 VRKFEGHTDRITDFCFSEDGKWLLSSGMDG---SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQN 621 (907)
Q Consensus 550 ~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg---~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~ 621 (907)
. .+..+...+....|+|||++|+.++.++ .|.+||+.++... .+..........|+|||++|+.+..++.
T Consensus 315 ~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~p~~spdg~~l~~~~~~~~ 387 (417)
T TIGR02800 315 R-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLDESPSFAPNGRMILYATTRGG 387 (417)
T ss_pred E-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCCCCceECCCCCEEEEEEeCCC
Confidence 3 4444556678889999999999888776 7999999876543 3332333556789999999998888763
No 269
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.29 E-value=4.1e-09 Score=115.32 Aligned_cols=298 Identities=15% Similarity=0.185 Sum_probs=187.5
Q ss_pred EeeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcC
Q 002564 100 LLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG 179 (907)
Q Consensus 100 ~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 179 (907)
...++.++.++.+|.|..+|..+++. +-+...........+. ++ +.+++++.+|.+..+|..+|+.+.....
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~----~W~~~~~~~~~~~p~v--~~--~~v~v~~~~g~l~ald~~tG~~~W~~~~ 133 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKR----LWRVDLDERLSGGVGA--DG--GLVFVGTEKGEVIALDAEDGKELWRAKL 133 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcE----eeeecCCCCcccceEE--cC--CEEEEEcCCCEEEEEECCCCcEeeeecc
Confidence 45688999999999999999999987 4444444333222222 23 6788999999999999999999987764
Q ss_pred CCCCEEE-EEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCE-----EEEEEecCCCCEEEEEeCCCcEEEEE
Q 002564 180 WGSSISS-CVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAV-----TALAFSSDGQPLLASGASSGVISIWN 253 (907)
Q Consensus 180 h~~~I~~-l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v-----~~l~fs~dg~~~l~sg~~dg~I~iwd 253 (907)
.. .+.+ ... .++.+++++.+|.+..||.++|+.+.++.... ..+ .+.... ++ .++.+..+|.+..+|
T Consensus 134 ~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~-~~~~~~~~~sp~~~-~~--~v~~~~~~g~v~ald 206 (377)
T TIGR03300 134 SS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVT-PALTLRGSASPVIA-DG--GVLVGFAGGKLVALD 206 (377)
T ss_pred Cc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCC-CceeecCCCCCEEE-CC--EEEEECCCCEEEEEE
Confidence 32 2221 111 34577788889999999999999887776431 111 111221 33 567788889999999
Q ss_pred CCCceeeeeeeccccc---C------e-EEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEe
Q 002564 254 LEKRRLQSVIREAHDN---A------I-ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323 (907)
Q Consensus 254 ~~~~~~~~~~~~~h~~---~------V-~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 323 (907)
..+|+.+......... . + .+..+ .+..++.++.+|.+..||..++. .+.... .. ......
T Consensus 207 ~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~----~~W~~~-~~-~~~~p~-- 276 (377)
T TIGR03300 207 LQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGR----VLWKRD-AS-SYQGPA-- 276 (377)
T ss_pred ccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCc----EEEeec-cC-CccCce--
Confidence 9999876554311110 0 0 01111 24477778889999999876543 221111 11 111112
Q ss_pred cCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEE
Q 002564 324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (907)
Q Consensus 324 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (907)
..+..++.++.+|.+..+|..+++...+
T Consensus 277 ~~~~~vyv~~~~G~l~~~d~~tG~~~W~---------------------------------------------------- 304 (377)
T TIGR03300 277 VDDNRLYVTDADGVVVALDRRSGSELWK---------------------------------------------------- 304 (377)
T ss_pred EeCCEEEEECCCCeEEEEECCCCcEEEc----------------------------------------------------
Confidence 2456788888999999999866543221
Q ss_pred EEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcE-EEEEE
Q 002564 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV-VGVAC 482 (907)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v-~~l~~ 482 (907)
..... . ....+..+ .+..+++++.+|.++++|..+|+.+..+. .+...+ ...++
T Consensus 305 ---~~~~~----------~--~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~--------~~~~~~~~sp~~ 359 (377)
T TIGR03300 305 ---NDELK----------Y--RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK--------TDGSGIASPPVV 359 (377)
T ss_pred ---ccccc----------C--CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE--------cCCCccccCCEE
Confidence 10000 0 01111111 36789999999999999999999988775 333222 22222
Q ss_pred cCCCCEEEEEecCCeEEEE
Q 002564 483 DSTNTLMISAGYHGDIKVW 501 (907)
Q Consensus 483 s~~~~~l~s~~~dg~i~iw 501 (907)
. + ..|+.++.||.|..+
T Consensus 360 ~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 360 V-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred E-C-CEEEEEeCCceEEEe
Confidence 2 3 358888899988765
No 270
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.5e-09 Score=119.00 Aligned_cols=133 Identities=9% Similarity=-0.006 Sum_probs=90.4
Q ss_pred EEEEEEcCCCCEEEEEe-cCCeEEEE--ECCC-Cceeeeee-cCcceeEEEEeeCCCEEEEEeCC---CeEEEEEcccce
Q 002564 477 VVGVACDSTNTLMISAG-YHGDIKVW--DFKG-RDLKSRWE-VGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALR 548 (907)
Q Consensus 477 v~~l~~s~~~~~l~s~~-~dg~i~iw--d~~~-~~~~~~~~-~~~~i~~~~~s~~~~~la~~~~d---g~I~v~d~~~~~ 548 (907)
....+|+|||+.|+..+ .+|...+| ++.. +.....+. ....+....|+|||+.|+....+ ..|.+||+.+++
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~ 362 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR 362 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 34568899998777655 45655555 4432 22223232 23466788999999998877553 479999999887
Q ss_pred eEEEeecCCCCeeeEEECCCCcEEEEEeC---CCcEEEEEcCCCceeeEeeeCCceEEEEECCCC
Q 002564 549 MVRKFEGHTDRITDFCFSEDGKWLLSSGM---DGSLRIWDVILARQIDAIHVDVSITALSLSPNM 610 (907)
Q Consensus 549 ~~~~~~~h~~~I~~l~fspdg~~l~s~s~---Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg 610 (907)
... +......+....|+|||++|+..+. ...|.+||+.+++..........+...+|+|-.
T Consensus 363 ~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 363 DYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred eEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 644 3333446778999999998875443 357889999888766655555557788888754
No 271
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.1e-09 Score=121.28 Aligned_cols=169 Identities=13% Similarity=0.008 Sum_probs=111.2
Q ss_pred EEEEEcCCCCEEEE-EeCCCc--EEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEec-CC--eEEEE
Q 002564 428 KACTISACGNFAVL-GTAGGW--IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-HG--DIKVW 501 (907)
Q Consensus 428 ~~~~~s~~g~~l~~-g~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg--~i~iw 501 (907)
...+|+|||+.++. .+.+|. |+++|+.++...... .+.......+|+||++.++..+. ++ .|.++
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt---------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~ 335 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRIT---------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRV 335 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECc---------cCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 46789999998875 455664 778888877654322 34455677899999998876553 33 46667
Q ss_pred ECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCC-C--eEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCC
Q 002564 502 DFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578 (907)
Q Consensus 502 d~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d-g--~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~D 578 (907)
|+.+++..............+|+|||++++..+.+ + .|.++|+.+++.. .+... .......|+|||++|+..+.+
T Consensus 336 dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 336 NLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred ECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEec
Confidence 88777654432222333457899999998887653 3 5666788877653 33322 122355899999998866543
Q ss_pred -C--cEEEEEcCCCceeeEeeeC-CceEEEEECC
Q 002564 579 -G--SLRIWDVILARQIDAIHVD-VSITALSLSP 608 (907)
Q Consensus 579 -g--~I~vwd~~~~~~~~~~~~~-~~v~~l~~sp 608 (907)
+ .+.+++. +|.....+..+ ..+...+|||
T Consensus 414 ~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 414 QGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 3 3777786 56666666543 3477788887
No 272
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.3e-09 Score=121.52 Aligned_cols=176 Identities=18% Similarity=0.155 Sum_probs=115.6
Q ss_pred cEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecC---CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCC
Q 002564 162 SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238 (907)
Q Consensus 162 ~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d---g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~ 238 (907)
.|.++|...+. .+.+..+...+....|+|||+.|+..+.+ ..|.+||+.+++... +... .+.+...+|+|||+.
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~-~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNF-EGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCC-CCCcCCeEECCCCCE
Confidence 47788876444 45555667889999999999998876543 468999998886543 2222 345667999999994
Q ss_pred EEEEEeCCC--cEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcC-CCcEEEEEccCCCCCcceeEeccCCCC
Q 002564 239 LLASGASSG--VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSA 315 (907)
Q Consensus 239 ~l~sg~~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~ 315 (907)
++++.+.+| .|.+||+.+++... +. .+........|+||++.++..+. ++...+|.++..++..+.+. ..+ .
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~-lt-~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~--~ 331 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSR-VT-NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVG--N 331 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEE-cc-cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCC--C
Confidence 555555555 68888998886543 33 35556677899999997766553 45545554444433333222 112 2
Q ss_pred CCeEEEEecCCCEEEEEeCC-C--CEEEEEcee
Q 002564 316 PPLCIRFYANGRHILSAGQD-R--AFRLFSVIQ 345 (907)
Q Consensus 316 ~v~~i~~~~~g~~l~s~~~d-g--~i~iwd~~~ 345 (907)
......|+|+|+.++..+.+ + .|.++|+.+
T Consensus 332 ~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 332 YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred CccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence 23457899999999877643 3 355566544
No 273
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.26 E-value=1.4e-07 Score=95.88 Aligned_cols=265 Identities=12% Similarity=0.120 Sum_probs=169.1
Q ss_pred CCcceEEEEEecCeEEEEEcC----eEEEEeC-CeeEEE-EcccccceEEEEeeCCEEEEEecCCcEEEEecCCCCcccc
Q 002564 55 LPKKIRALASYRDYTFAAYGN----HIAVVKR-AHQVAT-WSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLA 128 (907)
Q Consensus 55 ~~~~I~~la~~~~~~~~a~g~----~I~vw~~-~~~~~~-~~~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~ 128 (907)
.++.|+|=.+-.+.+|..+.- +|+--|. ++.++. ..-|.--...+..||+.++-. ..|.|.++|.++......
T Consensus 224 l~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekl 302 (668)
T COG4946 224 LDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKL 302 (668)
T ss_pred cCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEe-cCCcEEEeCCCcCcceee
Confidence 344555555555555555532 2444443 222222 111122223333578887764 478999999988765321
Q ss_pred cee-eEe---cCCCcccEE----EEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Q 002564 129 PVG-HVK---LDDKFTPTC----IMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC 200 (907)
Q Consensus 129 ~~~-~~~---~~~~~~~~~----~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~ 200 (907)
.+. .+. ....++..+ -|++..- ++++..|. |...+.+...+-.++. +|.+.|.-..+.-+++-++.|.
T Consensus 303 dI~lpl~rk~k~~k~~~pskyledfa~~~G-d~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt 378 (668)
T COG4946 303 DIGLPLDRKKKQPKFVNPSKYLEDFAVVNG-DYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGT 378 (668)
T ss_pred ecCCccccccccccccCHHHhhhhhccCCC-cEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEec
Confidence 111 000 001111000 0222211 56777755 5678887766665543 4667799999988888899999
Q ss_pred cCC-eEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecC
Q 002564 201 SDG-KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN 279 (907)
Q Consensus 201 ~dg-~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~ 279 (907)
.|| .+-|+|..+++... +... -+.|.++..++||+ .++++.....|.+.|++++.....-+ ...+-|+...|+|+
T Consensus 379 ~dgD~l~iyd~~~~e~kr-~e~~-lg~I~av~vs~dGK-~~vvaNdr~el~vididngnv~~idk-S~~~lItdf~~~~n 454 (668)
T COG4946 379 NDGDKLGIYDKDGGEVKR-IEKD-LGNIEAVKVSPDGK-KVVVANDRFELWVIDIDNGNVRLIDK-SEYGLITDFDWHPN 454 (668)
T ss_pred cCCceEEEEecCCceEEE-eeCC-ccceEEEEEcCCCc-EEEEEcCceEEEEEEecCCCeeEecc-cccceeEEEEEcCC
Confidence 998 89999998776444 3333 57899999999999 78888888999999999998765555 67788999999999
Q ss_pred CCEEEEEcCCC----cEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEe
Q 002564 280 EPVLMSASADN----SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG 333 (907)
Q Consensus 280 ~~~l~s~~~d~----~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~ 333 (907)
++++|-+--+| .|+++|++... .... ....+.=.+-+|.||+++|..-+
T Consensus 455 sr~iAYafP~gy~tq~Iklydm~~~K----iy~v-TT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 455 SRWIAYAFPEGYYTQSIKLYDMDGGK----IYDV-TTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ceeEEEecCcceeeeeEEEEecCCCe----EEEe-cCCcccccCcccCCCCcEEEEEe
Confidence 99999887664 68899887642 2211 11222234567889999887554
No 274
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=2.3e-09 Score=119.40 Aligned_cols=193 Identities=18% Similarity=0.049 Sum_probs=131.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEE-EEecCC--e
Q 002564 424 PTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHG--D 497 (907)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg--~ 497 (907)
...+....|+|+|+.++..+.+ ..|++|++.++...... ...+.+....|+|+|+.|+ +...+| .
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~---------~~~g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT---------NFEGLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc---------CCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence 3568899999999998776543 36899999888654322 2233455789999998876 444454 6
Q ss_pred EEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeC-C--CeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEE
Q 002564 498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD-D--LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS 574 (907)
Q Consensus 498 i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~-d--g~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s 574 (907)
|.+||+.+++...............|+|||+.++..+. + ..|+++|+.+++..+... .........|+|||++|+.
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccceEECCCCCEEEE
Confidence 88889998876554444455667889999998877664 2 367888888776533221 2223446789999999987
Q ss_pred EeCC-C--cEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCe--EEEee
Q 002564 575 SGMD-G--SLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG--VYLWV 627 (907)
Q Consensus 575 ~s~D-g--~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~--i~lW~ 627 (907)
.+.+ + .|.+||+.+++... +..........|+|||++++.++.++.. |++++
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~ 404 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVS 404 (430)
T ss_pred EEccCCceEEEEEECCCCCEEE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 7643 3 58889998886533 3222223456899999999988765432 44444
No 275
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.21 E-value=2.1e-11 Score=131.63 Aligned_cols=271 Identities=16% Similarity=0.206 Sum_probs=194.5
Q ss_pred eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCC-
Q 002564 258 RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR- 336 (907)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg- 336 (907)
+...++. .|....+|++|+-+.++|+.|+-.|.|+++++.++. .....++|..+++.+.-+.+|..+++.+.-.
T Consensus 1092 r~w~~fr-d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~----~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1092 RSWRSFR-DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS----MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred ccchhhh-ccccceeeEEeecCCceEEeeeccceEEEEEccCcc----ccccccccccccccccccCCcceeeeeccccC
Confidence 3344555 678899999999999999999999999999998774 3455679999999999999998887665433
Q ss_pred -CEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecce
Q 002564 337 -AFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415 (907)
Q Consensus 337 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~ 415 (907)
-..+|++..-... .|
T Consensus 1167 PlsaLW~~~s~~~~----------------------------------------------------------------~H 1182 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGP----------------------------------------------------------------RH 1182 (1516)
T ss_pred chHHHhccccccCc----------------------------------------------------------------cc
Confidence 2456665321000 11
Q ss_pred eeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecC
Q 002564 416 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYH 495 (907)
Q Consensus 416 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 495 (907)
.+ ..-.++.|+..-.+-++|+......+||++++....++..... +....-++..|+|+.++++- |
T Consensus 1183 sf-------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~----~~~y~~n~a~FsP~D~LIln---d 1248 (1516)
T KOG1832|consen 1183 SF-------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTV----TSSYSNNLAHFSPCDTLILN---D 1248 (1516)
T ss_pred cc-------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcch----hhhhhccccccCCCcceEee---C
Confidence 11 3345677777777778888888999999999998887542211 22233477889999887763 4
Q ss_pred CeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEE
Q 002564 496 GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 575 (907)
Q Consensus 496 g~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~ 575 (907)
|. +||....+.++.+.--..-..-.|||.|.-++..+ .|||++|.++++....-. -..+.|+..|..+...
T Consensus 1249 Gv--LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1249 GV--LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred ce--eeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEeccCccchhhh
Confidence 43 79999887777775444334457999999888765 489999998877655322 2456787777654432
Q ss_pred e-----C------------CCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecC
Q 002564 576 G-----M------------DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ 620 (907)
Q Consensus 576 s-----~------------Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~ 620 (907)
- . -...|.+|....+.+.++.+..++..++-+|...+|+..-..+
T Consensus 1320 ~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe~~~ 1381 (1516)
T KOG1832|consen 1320 LNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIEMED 1381 (1516)
T ss_pred hhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEeccC
Confidence 1 0 1246677777888899999999999999999999888765543
No 276
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=4e-09 Score=115.78 Aligned_cols=196 Identities=12% Similarity=0.027 Sum_probs=129.4
Q ss_pred CceEEEEEcCCCCE---EEEEeCCC--cEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEec-----
Q 002564 425 TAVKACTISACGNF---AVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY----- 494 (907)
Q Consensus 425 ~~v~~~~~s~~g~~---l~~g~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----- 494 (907)
....+-.|||||+. +++...+| .|++.++.++...... ...+.....+|+|||+.|+..+.
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt---------~~~g~~~~p~wSPDG~~Laf~s~~~g~~ 255 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL---------ALQGNQLMPTFSPRKKLLAFISDRYGNP 255 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee---------cCCCCccceEECCCCCEEEEEECCCCCc
Confidence 44567799999975 33555554 6888888877654432 23444566899999988876552
Q ss_pred CCeEEEEECCCC---ceeeeeecC-cceeEEEEeeCCCEEEEEeC-CCeEEEE--Eccc-ceeEEEeecCCCCeeeEEEC
Q 002564 495 HGDIKVWDFKGR---DLKSRWEVG-CSLVKIVYHRVNGLLATVAD-DLVIRLF--DVVA-LRMVRKFEGHTDRITDFCFS 566 (907)
Q Consensus 495 dg~i~iwd~~~~---~~~~~~~~~-~~i~~~~~s~~~~~la~~~~-dg~I~v~--d~~~-~~~~~~~~~h~~~I~~l~fs 566 (907)
+..+..|++..+ +........ ......+|+|||+.|+..+. +|...+| ++.. +.....+..+...+....||
T Consensus 256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wS 335 (428)
T PRK01029 256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWS 335 (428)
T ss_pred ceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeEC
Confidence 223445776653 333333322 34467899999998887663 5644444 5432 23345555555677889999
Q ss_pred CCCcEEEEEeCC---CcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecC--CeEEEeecc
Q 002564 567 EDGKWLLSSGMD---GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ--NGVYLWVNR 629 (907)
Q Consensus 567 pdg~~l~s~s~D---g~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~--~~i~lW~~~ 629 (907)
|||++|+..+.+ ..|.+||+.+++..........+.+..|+|||++|+....++ ..|++|++.
T Consensus 336 PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 336 PDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 999999876543 469999999887755444434578899999999988665432 247777753
No 277
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.19 E-value=2.9e-10 Score=120.85 Aligned_cols=287 Identities=16% Similarity=0.267 Sum_probs=184.4
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEEccC-CceEEEEeecCCCCEEEEEEecCCC-CEEEEEeCCCcEEEEECCCc-
Q 002564 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQ-PLLASGASSGVISIWNLEKR- 257 (907)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~-~~~~~~~~~~~~~~v~~l~fs~dg~-~~l~sg~~dg~I~iwd~~~~- 257 (907)
.+++.++..+|.|+-+|.++.-|. .+.|+.. +....-+.+...-.|-...|+|... .+-++......-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 567889999999999999998775 4556553 3444444433344677888887532 24444555666778987643
Q ss_pred -eeeeeeecccccCeEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCC
Q 002564 258 -RLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD 335 (907)
Q Consensus 258 -~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~d 335 (907)
+.+.-+..+|...|+.+.|.|..+ .+++++.|-.+..||+.... +.+.....-......+.|+-....++..+..
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~---~p~ys~~~w~s~asqVkwnyk~p~vlasshg 179 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH---RPFYSTSSWRSAASQVKWNYKDPNVLASSHG 179 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC---cceeeeecccccCceeeecccCcchhhhccC
Confidence 444444459999999999999765 78899999999999887653 2222222223334455555422233333333
Q ss_pred CCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecce
Q 002564 336 RAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH 415 (907)
Q Consensus 336 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~ 415 (907)
+.+++||.+
T Consensus 180 ~~i~vwd~r----------------------------------------------------------------------- 188 (1081)
T KOG0309|consen 180 NDIFVWDLR----------------------------------------------------------------------- 188 (1081)
T ss_pred CceEEEecc-----------------------------------------------------------------------
Confidence 445555543
Q ss_pred eeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCC-CCEEEEEec
Q 002564 416 ILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGY 494 (907)
Q Consensus 416 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~ 494 (907)
.|....... ++|...|.+++|..- ...+.+++.
T Consensus 189 ---------------------------------------~gs~pl~s~-------K~~vs~vn~~~fnr~~~s~~~s~~~ 222 (1081)
T KOG0309|consen 189 ---------------------------------------KGSTPLCSL-------KGHVSSVNSIDFNRFKYSEIMSSSN 222 (1081)
T ss_pred ---------------------------------------CCCcceEEe-------cccceeeehHHHhhhhhhhhcccCC
Confidence 322211111 367777777777642 346788999
Q ss_pred CCeEEEEECCCC--ceeeeeecCcceeEEEEeeCCCEEEEE--eCCCeEEEEEcc---------c-ceeEEEeecCCCCe
Q 002564 495 HGDIKVWDFKGR--DLKSRWEVGCSLVKIVYHRVNGLLATV--ADDLVIRLFDVV---------A-LRMVRKFEGHTDRI 560 (907)
Q Consensus 495 dg~i~iwd~~~~--~~~~~~~~~~~i~~~~~s~~~~~la~~--~~dg~I~v~d~~---------~-~~~~~~~~~h~~~I 560 (907)
||+|++||.... +..++.....+|..-++.|-|.-.++- -.+..+.+++.+ + .+.+.+|.||.+.|
T Consensus 223 d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V 302 (1081)
T KOG0309|consen 223 DGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV 302 (1081)
T ss_pred CCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHH
Confidence 999999998754 344555566788888888855422221 122244444332 2 36789999999998
Q ss_pred eeEEECCCC----------cEEEEEeCCCcEEEEEcCC
Q 002564 561 TDFCFSEDG----------KWLLSSGMDGSLRIWDVIL 588 (907)
Q Consensus 561 ~~l~fspdg----------~~l~s~s~Dg~I~vwd~~~ 588 (907)
....|-..+ -.|+|-|.|.++|+|-+.+
T Consensus 303 ~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 303 LEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred HHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 877774422 2699999999999998764
No 278
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.18 E-value=5.7e-09 Score=99.62 Aligned_cols=271 Identities=14% Similarity=0.161 Sum_probs=181.0
Q ss_pred cCCeEEEEEccCCceEE--EEeecCCCCEEEEEEec---CCCCEEEEEeCCCcEEEEECCCceeeeeeecccc------c
Q 002564 201 SDGKIHVHNVRYDEELV--TFTHSMRGAVTALAFSS---DGQPLLASGASSGVISIWNLEKRRLQSVIREAHD------N 269 (907)
Q Consensus 201 ~dg~I~iwd~~~~~~~~--~~~~~~~~~v~~l~fs~---dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~------~ 269 (907)
..|.+.+|++...+... ++.......+..+.|+- +|...++-+...|.|.++..........+. +-. .
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~-~ls~~ki~~~ 122 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLR-GLSSKKISVV 122 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeec-ccchhhhhhe
Confidence 34778899887665433 23322245677777763 455466777788999999876655444444 111 1
Q ss_pred CeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceeccc
Q 002564 270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQ 348 (907)
Q Consensus 270 ~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~ 348 (907)
...++.|++.+..++++..+|.+.+-+.... .....+..+.|.-+.....|+. +.+.+++||.|+.+..||++.+..
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~--~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEM--VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEeccee--eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence 2457889999999999999999985543322 1122347789999999999987 567889999999999999862210
Q ss_pred ceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceE
Q 002564 349 SRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVK 428 (907)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~ 428 (907)
T Consensus 201 -------------------------------------------------------------------------------- 200 (339)
T KOG0280|consen 201 -------------------------------------------------------------------------------- 200 (339)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcC-CCCEEEEEecCCeEEEEECC-CC
Q 002564 429 ACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDIKVWDFK-GR 506 (907)
Q Consensus 429 ~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~-~~ 506 (907)
+ +|.- ..-|...|.+|.-+| ...++++|+.|..|++||.+ -+
T Consensus 201 ---------~-----------i~~n----------------~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~ 244 (339)
T KOG0280|consen 201 ---------F-----------IWHN----------------SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG 244 (339)
T ss_pred ---------e-----------eeec----------------ceeeecceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence 0 0100 025777888888776 56799999999999999998 46
Q ss_pred ceeeeeecCcceeEEEEeeCCC-EEEEEeCCCeEEEEEcccc--e---eEEEeecCCCCeeeEEECCCCcEEEEEe-CCC
Q 002564 507 DLKSRWEVGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVAL--R---MVRKFEGHTDRITDFCFSEDGKWLLSSG-MDG 579 (907)
Q Consensus 507 ~~~~~~~~~~~i~~~~~s~~~~-~la~~~~dg~I~v~d~~~~--~---~~~~~~~h~~~I~~l~fspdg~~l~s~s-~Dg 579 (907)
+++..-...+.|..+..+|.-. .+.+++.-+-.+|.+.+.+ + .......|.+-...-.|.....+|+|++ .|+
T Consensus 245 kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk 324 (339)
T KOG0280|consen 245 KPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDK 324 (339)
T ss_pred CccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeecccc
Confidence 7777777779999999999433 3333334444666666544 2 3344556766666666644445788865 577
Q ss_pred cEE-EEEcCCCc
Q 002564 580 SLR-IWDVILAR 590 (907)
Q Consensus 580 ~I~-vwd~~~~~ 590 (907)
.++ +|-.-++.
T Consensus 325 ~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 325 KIRQLWLHITGE 336 (339)
T ss_pred ceeeeeeeccCC
Confidence 655 77655543
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.15 E-value=1.8e-08 Score=94.88 Aligned_cols=272 Identities=11% Similarity=0.088 Sum_probs=178.9
Q ss_pred cCCcEEEEecCCCe--EEEEEcCCCCCEEEEEEcC-----CCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEE
Q 002564 159 QEGSLQLWNISTKK--KLYEFKGWGSSISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA 231 (907)
Q Consensus 159 ~dg~i~iwd~~~~~--~~~~~~~h~~~I~~l~~sp-----~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~ 231 (907)
....+-+|++-+.. .+... +.+.|.| .-.+||.|+..|...+|...+.+....+-..+...|+-..
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~ 122 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVK 122 (344)
T ss_pred ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhh
Confidence 34457777765433 22222 2344554 3458999999999999999977655544433333333322
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeE-ec
Q 002564 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR-FR 310 (907)
Q Consensus 232 fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-~~ 310 (907)
=..|...-+..++.|.++++.+++.+........ ..-.+.+++++++++++++.+....|-.|.++.... .+++ ..
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~-~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se--y~~~~~~ 199 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN-QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE--YIENIYE 199 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCcccceeec-cccceeeeEEcCCCceEEEecCCCcceEEEeCCccc--eeeeeEe
Confidence 2223333466778889999998876654444321 112388999999999999999999999998876543 2333 33
Q ss_pred cCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeeccccccccc
Q 002564 311 SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC 390 (907)
Q Consensus 311 ~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 390 (907)
...+..-.+..|+.....++++.+||++.+||++........
T Consensus 200 a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~-------------------------------------- 241 (344)
T KOG4532|consen 200 APTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE-------------------------------------- 241 (344)
T ss_pred cccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh--------------------------------------
Confidence 445556678899998899999999999999999865432211
Q ss_pred ceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCccceeeeccccc
Q 002564 391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG--NFAVLGTAGGWIERFNLQSGISRGSYLDMSER 468 (907)
Q Consensus 391 ~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~ 468 (907)
.-...+.|.+.++.+.|++-| .+|+..-.-+.+.+.|+.++............
T Consensus 242 -------------------------~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~ 296 (344)
T KOG4532|consen 242 -------------------------ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDV 296 (344)
T ss_pred -------------------------hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccc
Confidence 011123467899999999877 45666666789999999998776665433222
Q ss_pred cccCcC-CcEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 002564 469 SNYAHN-GEVVGVACDSTNTLMISAGYHGDIKVWDFKG 505 (907)
Q Consensus 469 ~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 505 (907)
. ..|. ..|.+-.|+.++..+.+...+ .+.=|++.+
T Consensus 297 ~-~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 297 E-RKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred c-ccccccccccccccCCCcccccccch-hhheeeccc
Confidence 2 2344 348888888888766665543 344455543
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.15 E-value=3.7e-10 Score=131.21 Aligned_cols=224 Identities=14% Similarity=0.242 Sum_probs=170.2
Q ss_pred CEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEE
Q 002564 194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIIS 273 (907)
Q Consensus 194 ~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 273 (907)
+.......++...-|..+-+... ..++-..|.++.=+|... +.++|+.||.+++|....+..+...+.+-...|+.
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~~---~k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr 2256 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVM---IKHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTR 2256 (2439)
T ss_pred ccCCcccCCccccceecccceeE---eecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhhh
Confidence 33444444555555554432222 223345788888888887 78899999999999999999888888666689999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEe---CCCCEEEEEceecccce
Q 002564 274 LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAG---QDRAFRLFSVIQDQQSR 350 (907)
Q Consensus 274 l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~---~dg~i~iwd~~~~~~~~ 350 (907)
+.|+.+|+.+..+..||.+.+|... ++.......|.......+|-. ..+++++ .++.+.+||..-.
T Consensus 2257 ~~f~~qGnk~~i~d~dg~l~l~q~~-----pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~---- 2325 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQAS-----PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP---- 2325 (2439)
T ss_pred hhhcccCCceeeeccCCceeecccC-----CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccC----
Confidence 9999999999999999999999765 356667778888888888875 4566654 3456666663210
Q ss_pred eechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEE
Q 002564 351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC 430 (907)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~ 430 (907)
T Consensus 2326 -------------------------------------------------------------------------------- 2325 (2439)
T KOG1064|consen 2326 -------------------------------------------------------------------------------- 2325 (2439)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceee
Q 002564 431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS 510 (907)
Q Consensus 431 ~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 510 (907)
....... ..|.+.++++++-|..+.+++||.+|.|++||++..++++
T Consensus 2326 --------------------------~~~s~v~-------~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h 2372 (2439)
T KOG1064|consen 2326 --------------------------PMNSLVH-------TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH 2372 (2439)
T ss_pred --------------------------cccceee-------eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH
Confidence 0000000 2899999999999999999999999999999999988888
Q ss_pred eeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee
Q 002564 511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE 554 (907)
Q Consensus 511 ~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~ 554 (907)
.++. ++ ...++++|+..|.++||++.....+..+.
T Consensus 2373 ~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2373 TFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred Hhhh--------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 7765 33 56789999999999999999887777765
No 281
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.13 E-value=5.7e-10 Score=129.74 Aligned_cols=182 Identities=16% Similarity=0.251 Sum_probs=144.1
Q ss_pred cCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCC
Q 002564 159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQP 238 (907)
Q Consensus 159 ~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~ 238 (907)
.++...-|..+.+... ++.+-..|.++.-+|...+-++|+.||.|++|....+..+..+.......|+.+.|+.+|.
T Consensus 2188 ~~~~~~tq~~~~~~~~--~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGn- 2264 (2439)
T KOG1064|consen 2188 LPWLGSTQTSRGASVM--IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGN- 2264 (2439)
T ss_pred CCccccceecccceeE--eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCC-
Confidence 3444444554333222 2334567888888999999999999999999999999999999876678999999999998
Q ss_pred EEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcC---CCcEEEEEccCCCCCcceeEeccCCCC
Q 002564 239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA---DNSIKMWIFDTTDGDPRLLRFRSGHSA 315 (907)
Q Consensus 239 ~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---d~~i~vw~~~~~~~~~~~~~~~~~h~~ 315 (907)
-+..+..||.+.+|... .+.....+ .|........|.. ..+++++. ++.+.+||....... .++. ..|.+
T Consensus 2265 k~~i~d~dg~l~l~q~~-pk~~~s~q-chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~-s~v~--~~H~~ 2337 (2439)
T KOG1064|consen 2265 KFGIVDGDGDLSLWQAS-PKPYTSWQ-CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN-SLVH--TCHDG 2337 (2439)
T ss_pred ceeeeccCCceeecccC-Ccceeccc-cCCccccceeeee--hhhhccccCCCCCcccchhcccCccc-ceee--eecCC
Confidence 67888889999999986 66666666 8999999999986 56777653 689999986554432 2333 68999
Q ss_pred CCeEEEEecCCCEEEEEeCCCCEEEEEceecccce
Q 002564 316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR 350 (907)
Q Consensus 316 ~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~ 350 (907)
.+++++|.|..+.|++||.+|.+++||++..+...
T Consensus 2338 gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h 2372 (2439)
T KOG1064|consen 2338 GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH 2372 (2439)
T ss_pred CceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH
Confidence 99999999999999999999999999997655433
No 282
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.09 E-value=8.6e-09 Score=98.44 Aligned_cols=237 Identities=13% Similarity=0.111 Sum_probs=159.0
Q ss_pred EEEEEecCCcEEEEecCCCCcc--ccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeE--EEEEcCC
Q 002564 105 HILSIDIDGNMFIWAFKGIEEN--LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK--LYEFKGW 180 (907)
Q Consensus 105 ~l~s~~~dg~v~vWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~h 180 (907)
.|+-+..+|.|.++.....+.. ..++...........+.-|++.+ ..++++-.+|.+.+-+...... +++.++|
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~--~~i~vs~s~G~~~~v~~t~~~le~vq~wk~H 164 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSG--TKIFVSDSRGSISGVYETEMVLEKVQTWKVH 164 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccC--ceEEEEcCCCcEEEEecceeeeeeccccccc
Confidence 4555666888888876554331 11122111111223344578888 7899999999999777655544 4488999
Q ss_pred CCCEEEEEEcCC-CCEEEEEecCCeEEEEEcc-CCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCC-c
Q 002564 181 GSSISSCVSSPA-LDVVAVGCSDGKIHVHNVR-YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-R 257 (907)
Q Consensus 181 ~~~I~~l~~sp~-~~~la~g~~dg~I~iwd~~-~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~-~ 257 (907)
.-+.+.+.|+.. .+++.+|+.||.+..||++ .++.+..-..-|...|.+|.-+|...+++++|+.|-.|++||.++ +
T Consensus 165 e~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~ 244 (339)
T KOG0280|consen 165 EFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG 244 (339)
T ss_pred ceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence 999999999864 4689999999999999999 444554433344678999999988777999999999999999984 5
Q ss_pred eeeeeeecccccCeEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCC-cceeEeccCCCCCCeEEEEecCCCEEEEEe-C
Q 002564 258 RLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGD-PRLLRFRSGHSAPPLCIRFYANGRHILSAG-Q 334 (907)
Q Consensus 258 ~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~-~ 334 (907)
+++..-. -.+.|..+.++|.-. .++.++.-+-.++-+.+..... ...+...+.|.+-...-.|......+++|+ .
T Consensus 245 kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFY 322 (339)
T KOG0280|consen 245 KPLFKAK--VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFY 322 (339)
T ss_pred CccccCc--cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeecc
Confidence 6665544 558999999998543 3333444445677666544332 123445556666555555544345677765 5
Q ss_pred CCCEE-EEEcee
Q 002564 335 DRAFR-LFSVIQ 345 (907)
Q Consensus 335 dg~i~-iwd~~~ 345 (907)
|+.++ +|-..+
T Consensus 323 Dk~~~~~Wl~~t 334 (339)
T KOG0280|consen 323 DKKIRQLWLHIT 334 (339)
T ss_pred ccceeeeeeecc
Confidence 66655 775443
No 283
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.08 E-value=9.3e-08 Score=104.98 Aligned_cols=304 Identities=13% Similarity=0.103 Sum_probs=182.4
Q ss_pred CEEEEEecCCcEEEEecCCCeEEEEEcCCCC-CE-E-----EEEEcC--CCCEEEEEecCCeEEEEEccCCceEEEEeec
Q 002564 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGS-SI-S-----SCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFTHS 222 (907)
Q Consensus 152 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~-~I-~-----~l~~sp--~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~ 222 (907)
+++++++.+|.+.-+|.++|+.+........ .+ . .+.-+| ++..+++++.+|.+..+|.++|+.+.+....
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 149 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVA 149 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCC
Confidence 5788998999999999999999988754220 00 0 001111 3567788888999999999999998877654
Q ss_pred CCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeccccc----CeEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 002564 223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN----AIISLHFFANEPVLMSASADNSIKMWIFD 298 (907)
Q Consensus 223 ~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~----~V~~l~~~~~~~~l~s~~~d~~i~vw~~~ 298 (907)
+.+.+--.-.++ .++.++.+|.|..+|..+|+.+......... ...+-... +..++.++.++.+..++..
T Consensus 150 --~~~~ssP~v~~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 150 --GEALSRPVVSDG--LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred --CceecCCEEECC--EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CCEEEEEcCCCEEEEEEcc
Confidence 333321111244 4666778899999999999988777621110 00111111 2356667778888777765
Q ss_pred CCCCCcceeEec-cC-CC-CCCeEEEEec--CCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhccc
Q 002564 299 TTDGDPRLLRFR-SG-HS-APPLCIRFYA--NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 373 (907)
Q Consensus 299 ~~~~~~~~~~~~-~~-h~-~~v~~i~~~~--~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (907)
.+...++..... .+ +. .....+..+| .+..++.++.+|.+..+|..+++..
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~------------------------ 279 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV------------------------ 279 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE------------------------
Confidence 543222211000 00 00 0001111122 2456777778888888887665432
Q ss_pred CceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 002564 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNL 453 (907)
Q Consensus 374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~ 453 (907)
|.... .....+ ...+..+++++.+|.+..+|.
T Consensus 280 -------------------------------W~~~~---------------~~~~~~--~~~~~~vy~~~~~g~l~ald~ 311 (394)
T PRK11138 280 -------------------------------WKREY---------------GSVNDF--AVDGGRIYLVDQNDRVYALDT 311 (394)
T ss_pred -------------------------------EeecC---------------CCccCc--EEECCEEEEEcCCCeEEEEEC
Confidence 22110 000011 124677888889999999999
Q ss_pred CCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC-cceeE-EEEeeCCCEEE
Q 002564 454 QSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVK-IVYHRVNGLLA 531 (907)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~-~~~s~~~~~la 531 (907)
.+|+.+...... .+ ....+..+ .+..++.++.||.+...|..+|+.+...+.. ..+.+ ..+ .++.|+
T Consensus 312 ~tG~~~W~~~~~------~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~ 380 (394)
T PRK11138 312 RGGVELWSQSDL------LH-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLL 380 (394)
T ss_pred CCCcEEEccccc------CC-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEE
Confidence 998776543210 11 11122222 2457888899999999999999988877653 22322 122 356788
Q ss_pred EEeCCCeEEEEEc
Q 002564 532 TVADDLVIRLFDV 544 (907)
Q Consensus 532 ~~~~dg~I~v~d~ 544 (907)
+++.||.++.++.
T Consensus 381 v~t~~G~l~~~~~ 393 (394)
T PRK11138 381 IQARDGTVYAITR 393 (394)
T ss_pred EEeCCceEEEEeC
Confidence 8899999888764
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.08 E-value=1.2e-07 Score=114.83 Aligned_cols=273 Identities=13% Similarity=0.124 Sum_probs=153.6
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeec-c------------cccCeEEEEEecCCCEEEEEc-CCCcEE
Q 002564 228 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE-A------------HDNAIISLHFFANEPVLMSAS-ADNSIK 293 (907)
Q Consensus 228 ~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~-~------------h~~~V~~l~~~~~~~~l~s~~-~d~~i~ 293 (907)
..+++++++..++++-..++.|.+||... ..+..+.. + +-.....+++.++++.|+++. ..+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875443777777889999999754 43333321 1 122468899999888666654 456788
Q ss_pred EEEccCCCCCcceeEeccC-----------------CCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechh
Q 002564 294 MWIFDTTDGDPRLLRFRSG-----------------HSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQR 355 (907)
Q Consensus 294 vw~~~~~~~~~~~~~~~~~-----------------h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 355 (907)
++|+.... +..+.+ .-..+..++++| ++..+++.+.++.|++|+..++.... +..
T Consensus 650 ~id~~~~~-----V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G- 722 (1057)
T PLN02919 650 EIDFVNET-----VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSG- 722 (1057)
T ss_pred EEecCCCE-----EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-Eec-
Confidence 88765431 111110 012456788888 55566666777888888865432110 000
Q ss_pred hhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCC
Q 002564 356 HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC 435 (907)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 435 (907)
++.....+ ... ...........++++|+
T Consensus 723 -------------------------------------------~G~~~~~~---g~~------~~~~~~~~P~GIavspd 750 (1057)
T PLN02919 723 -------------------------------------------DGYERNLN---GSS------GTSTSFAQPSGISLSPD 750 (1057)
T ss_pred -------------------------------------------CCccccCC---CCc------cccccccCccEEEEeCC
Confidence 00000000 000 00000133455677777
Q ss_pred CCEEEE-EeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEec----CCeEEEEECCCCceee
Q 002564 436 GNFAVL-GTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY----HGDIKVWDFKGRDLKS 510 (907)
Q Consensus 436 g~~l~~-g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~ 510 (907)
|+.+++ .+.++.|++||+.++.. . ++.++. +....+++........
T Consensus 751 G~~LYVADs~n~~Irv~D~~tg~~-------------------~----------~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 751 LKELYIADSESSSIRALDLKTGGS-------------------R----------LLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred CCEEEEEECCCCeEEEEECCCCcE-------------------E----------EEEecccccCcccccccCCCCchhhh
Confidence 664433 33446677776553310 0 000000 0011111110000000
Q ss_pred eeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee-------------cCCCCeeeEEECCCCcEEEEEeC
Q 002564 511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-------------GHTDRITDFCFSEDGKWLLSSGM 577 (907)
Q Consensus 511 ~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~-------------~h~~~I~~l~fspdg~~l~s~s~ 577 (907)
. ......++++++|+++++-..++.|++||..++....... +.-.....++++++|+.+++-+.
T Consensus 802 ~---l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 802 L---LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred h---ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 0 1234588999999988888899999999998876543221 12235778999999999998889
Q ss_pred CCcEEEEEcCCCcee
Q 002564 578 DGSLRIWDVILARQI 592 (907)
Q Consensus 578 Dg~I~vwd~~~~~~~ 592 (907)
++.|++||+.+++..
T Consensus 879 Nn~Irvid~~~~~~~ 893 (1057)
T PLN02919 879 NSLIRYLDLNKGEAA 893 (1057)
T ss_pred CCEEEEEECCCCccc
Confidence 999999999988753
No 285
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=2.3e-07 Score=112.48 Aligned_cols=261 Identities=13% Similarity=0.171 Sum_probs=159.5
Q ss_pred EEEEEcCC-CCEEEEEecCCeEEEEEccCCceEEEEee-cC------------CCCEEEEEEecCCCCEEEEEeCCCcEE
Q 002564 185 SSCVSSPA-LDVVAVGCSDGKIHVHNVRYDEELVTFTH-SM------------RGAVTALAFSSDGQPLLASGASSGVIS 250 (907)
Q Consensus 185 ~~l~~sp~-~~~la~g~~dg~I~iwd~~~~~~~~~~~~-~~------------~~~v~~l~fs~dg~~~l~sg~~dg~I~ 250 (907)
..++++++ +++.++-+.++.|++||.. ++.+..+.. +. -.....+++.+++..+.++-..++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788875 4555565677899999975 554444432 10 123688999998873344444567899
Q ss_pred EEECCCceeeeeeeccc---------------ccCeEEEEEec-CCCEEEEEcCCCcEEEEEccCCCCCccee------E
Q 002564 251 IWNLEKRRLQSVIREAH---------------DNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLL------R 308 (907)
Q Consensus 251 iwd~~~~~~~~~~~~~h---------------~~~V~~l~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~------~ 308 (907)
++|+.++........+. -.....++++| ++.++++.+.++.|++|+...... ... .
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v--~~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT--RVFSGDGYER 727 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE--EEEecCCccc
Confidence 99987765432211000 12346899999 566667777788999997654310 000 0
Q ss_pred eccC------CCCCCeEEEEecCCCEEE-EEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeee
Q 002564 309 FRSG------HSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDC 381 (907)
Q Consensus 309 ~~~~------h~~~v~~i~~~~~g~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 381 (907)
...+ .-..+..++++|+++.|+ +-+.++.|++||+.++.
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~---------------------------------- 773 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG---------------------------------- 773 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc----------------------------------
Confidence 0011 123567799999887554 44556788888864221
Q ss_pred cccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeC----CCcEEEEeCCCCc
Q 002564 382 AEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA----GGWIERFNLQSGI 457 (907)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~----dg~i~i~d~~~~~ 457 (907)
+ .+++|+. +......+. .+.
T Consensus 774 ---------------------------------------------~----------~~~~gg~~~~~~~l~~fG~~-dG~ 797 (1057)
T PLN02919 774 ---------------------------------------------S----------RLLAGGDPTFSDNLFKFGDH-DGV 797 (1057)
T ss_pred ---------------------------------------------E----------EEEEecccccCcccccccCC-CCc
Confidence 1 1111110 000001000 000
Q ss_pred cceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC--------------cceeEEEE
Q 002564 458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--------------CSLVKIVY 523 (907)
Q Consensus 458 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------~~i~~~~~ 523 (907)
.. ...-....+++++++|..+++-..++.|++||..++......... .....+++
T Consensus 798 g~-----------~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIav 866 (1057)
T PLN02919 798 GS-----------EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLAL 866 (1057)
T ss_pred hh-----------hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEE
Confidence 00 011223468999999998888889999999999887655433211 25678999
Q ss_pred eeCCCEEEEEeCCCeEEEEEccccee
Q 002564 524 HRVNGLLATVADDLVIRLFDVVALRM 549 (907)
Q Consensus 524 s~~~~~la~~~~dg~I~v~d~~~~~~ 549 (907)
+++|+++++-+.++.|++||+.+++.
T Consensus 867 d~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 867 GENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcc
Confidence 99999888888999999999998865
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=2.4e-09 Score=110.05 Aligned_cols=287 Identities=17% Similarity=0.187 Sum_probs=191.6
Q ss_pred ccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC---cceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEE
Q 002564 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD---PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 342 (907)
Q Consensus 266 ~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~---~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd 342 (907)
+|...|..++-..+.+-+++++.|.+|++|.+...... ..+..++..|..+|.++.|..+-++++++ ||.+.+||
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWD 810 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWD 810 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeec
Confidence 89999999998889999999999999999998765432 23667788999999999999988877765 78899999
Q ss_pred ceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCC
Q 002564 343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422 (907)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~ 422 (907)
.-.++...... |+.+ .+
T Consensus 811 PFigr~Laq~~---------------------------------------------------dapk------------~~ 827 (1034)
T KOG4190|consen 811 PFIGRLLAQME---------------------------------------------------DAPK------------EG 827 (1034)
T ss_pred ccccchhHhhh---------------------------------------------------cCcc------------cC
Confidence 76544332110 0000 01
Q ss_pred CCCceEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEE
Q 002564 423 NPTAVKACTISACGNFAVLG-TAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501 (907)
Q Consensus 423 ~~~~v~~~~~s~~g~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 501 (907)
..+.|.++. +-+...++.| +...+|+++|..++.-...+.... ..+.+..+.++++.+.|+.++.+-..|+|.+.
T Consensus 828 a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn---a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~L 903 (1034)
T KOG4190|consen 828 AGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN---APGPNALTRAIAVADKGNKLAAALSNGCIAIL 903 (1034)
T ss_pred CCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEecc---CCCCchheeEEEeccCcchhhHHhcCCcEEEE
Confidence 112222222 1133444445 678899999999987776664211 13455679999999999999999999999999
Q ss_pred ECCCCceeeeeecC-cceeEEEEeeCCCEEEEEeCCCeEEE-EEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCC
Q 002564 502 DFKGRDLKSRWEVG-CSLVKIVYHRVNGLLATVADDLVIRL-FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDG 579 (907)
Q Consensus 502 d~~~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~dg~I~v-~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg 579 (907)
|..+|+.+..+... .....++- |..+.++....|.++.| |..-.+....+.+....+..- .-.-|.-|+++....
T Consensus 904 DaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~kpppepahf--lqsvgpSLV~a~~Gn 980 (1034)
T KOG4190|consen 904 DARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHF--LQSVGPSLVTAQNGN 980 (1034)
T ss_pred ecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhh--hhccCceeEEeccCc
Confidence 99999988877543 33333332 45566777777888888 877777665555533333221 112366788887777
Q ss_pred cEEEEEcC-C---CceeeEee---eCCceEEEEECCCCceEEEEEecCCeEEE
Q 002564 580 SLRIWDVI-L---ARQIDAIH---VDVSITALSLSPNMDVLATAHVDQNGVYL 625 (907)
Q Consensus 580 ~I~vwd~~-~---~~~~~~~~---~~~~v~~l~~spdg~~lat~~~d~~~i~l 625 (907)
.+.||.-. . -..+..++ .....++++.-|-..-...+...|. |.+
T Consensus 981 ~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~-IaL 1032 (1034)
T KOG4190|consen 981 ILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGA-IAL 1032 (1034)
T ss_pred EEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCc-eee
Confidence 78888421 1 11222232 3445788888886655555655553 543
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=1.2e-07 Score=103.38 Aligned_cols=190 Identities=11% Similarity=-0.022 Sum_probs=128.2
Q ss_pred ceEEEEEcCCCCE-EEEEeCC---CcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEE-ec--CCeE
Q 002564 426 AVKACTISACGNF-AVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA-GY--HGDI 498 (907)
Q Consensus 426 ~v~~~~~s~~g~~-l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~--dg~i 498 (907)
......|+|||+. ++..+.. ..|+++|+.+++..... ...+......|+|||+.++.. +. +..|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---------~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---------SSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---------cCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 5678899999985 6544333 47999999888765543 234556677899999866543 33 3568
Q ss_pred EEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCC-C--eEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEE
Q 002564 499 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADD-L--VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 575 (907)
Q Consensus 499 ~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~d-g--~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~ 575 (907)
.++|+.+++...............|+|||+.|+..++. + .|.++|+.+++..+.... .. ....|||||++|+..
T Consensus 260 y~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 260 YLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYS 336 (419)
T ss_pred EEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEE
Confidence 88898888755443333334556899999988877643 2 688889988776443321 11 124899999999876
Q ss_pred eCC---------CcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeec
Q 002564 576 GMD---------GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (907)
Q Consensus 576 s~D---------g~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~ 628 (907)
+.. ..|.+.|+.++.... +..........|||||+.|+.....+..-.||-+
T Consensus 337 ~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~ 397 (419)
T PRK04043 337 SRETNNEFGKNTFNLYLISTNSDYIRR-LTANGVNQFPRFSSDGGSIMFIKYLGNQSALGII 397 (419)
T ss_pred EcCCCcccCCCCcEEEEEECCCCCeEE-CCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence 643 368888988886533 3323334468999999999888766543445543
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.96 E-value=4.5e-08 Score=93.96 Aligned_cols=335 Identities=14% Similarity=0.189 Sum_probs=203.2
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCc-e----EEEEeecC-----------CCCEEEEEEecCC-CCEEEEE
Q 002564 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-E----LVTFTHSM-----------RGAVTALAFSSDG-QPLLASG 243 (907)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~-~----~~~~~~~~-----------~~~v~~l~fs~dg-~~~l~sg 243 (907)
...|+++.|...|.+|++|...|.|.+|.-.... + ...|+.+. ...|..+.|..++ +..+...
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 5679999999999999999999999999765332 1 11222221 2367788887654 3455566
Q ss_pred eCCCcEEEEECCCce------------------------------------------eeeeeecccccCeEEEEEecCCC
Q 002564 244 ASSGVISIWNLEKRR------------------------------------------LQSVIREAHDNAIISLHFFANEP 281 (907)
Q Consensus 244 ~~dg~I~iwd~~~~~------------------------------------------~~~~~~~~h~~~V~~l~~~~~~~ 281 (907)
+.|.+|++|.+.... +.+....+|..-|.++.|..|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 779999999774320 00112146788899999999998
Q ss_pred EEEEEcCCCcEEEEEccCCCCCcceeEeccCCC-----CCCeEEEEec-CCCEEEEEeCCCCEEEEEceecccceeechh
Q 002564 282 VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS-----APPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQQSRELSQR 355 (907)
Q Consensus 282 ~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~-----~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 355 (907)
.++++. |=.|.+|+++..++...++... .|. .-|++..|+| ....+...+..|.|++-|++.......
T Consensus 186 t~lSaD-dLrINLWnl~i~D~sFnIVDiK-P~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn---- 259 (460)
T COG5170 186 TLLSAD-DLRINLWNLEIIDGSFNIVDIK-PHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN---- 259 (460)
T ss_pred eeeecc-ceeeeeccccccCCceEEEecc-CccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC----
Confidence 888775 7789999998887766655433 332 3578888998 445666777888999988764321100
Q ss_pred hhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCC
Q 002564 356 HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC 435 (907)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 435 (907)
++
T Consensus 260 ------------------------------------------------------------------------------~~ 261 (460)
T COG5170 260 ------------------------------------------------------------------------------SK 261 (460)
T ss_pred ------------------------------------------------------------------------------ch
Confidence 00
Q ss_pred CCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC-ceeeeeec
Q 002564 436 GNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-DLKSRWEV 514 (907)
Q Consensus 436 g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~ 514 (907)
.+.--+.|| ....-+ .+-...|..+.|+++|+++++-+. -++++||.... .++.++..
T Consensus 262 --klfe~~~D~----------v~~~ff--------~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~ 320 (460)
T COG5170 262 --KLFELTIDG----------VDVDFF--------EEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPM 320 (460)
T ss_pred --hhhhhccCc----------ccchhH--------HHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeech
Confidence 000000000 000000 134567889999999999987765 78999998743 45555533
Q ss_pred C-------------cc---eeEEEEeeCCCEEEEEeCCCeEEEEEcccc-----eeEEEeecCCC----------CeeeE
Q 002564 515 G-------------CS---LVKIVYHRVNGLLATVADDLVIRLFDVVAL-----RMVRKFEGHTD----------RITDF 563 (907)
Q Consensus 515 ~-------------~~---i~~~~~s~~~~~la~~~~dg~I~v~d~~~~-----~~~~~~~~h~~----------~I~~l 563 (907)
+ .. -..+.||.|.+.+.+|+..+..-+|-..+. -.+..+..|.. .|...
T Consensus 321 h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ssg~~D~g~vv~~ad~~a~~~~~k~~~nnv~kk 400 (460)
T COG5170 321 HCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSGFKDVGHVVNLADGSAEDFKVKCETNNVEKK 400 (460)
T ss_pred HHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccccCCCCcceEEEecccCCcccccCcccccccccc
Confidence 2 11 235678888889999988887777764331 11222222221 11111
Q ss_pred E-ECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEee
Q 002564 564 C-FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWV 627 (907)
Q Consensus 564 ~-fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~ 627 (907)
. ...+.....+.+.+|.+..-.= -..+.....|....|+|-..-+|.+..+. ++++.
T Consensus 401 d~~kn~~~rs~ss~a~g~~~~~eD-----~d~ld~~k~ilh~sWhp~e~svaiaatnn--lfvfs 458 (460)
T COG5170 401 DKLKNNDWRSVSSSADGFVVACED-----PDNLDLLKKILHRSWHPFEDSVAIAATNN--LFVFS 458 (460)
T ss_pred cccccccccccccccCcceeeccC-----cchhHHHHHHHhhccCCcccceeeeecCc--eEEEe
Confidence 1 1111122444444554433211 12233344577788999888888887775 66654
No 289
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.95 E-value=5.9e-09 Score=104.22 Aligned_cols=171 Identities=17% Similarity=0.218 Sum_probs=122.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (907)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 504 (907)
.....+..++.+++++++..+....+++.........+.... ........++.+..+......-.++....+.+|...
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeeccceEEEEeecCCceeeeeeccc
Confidence 345556778899999999999988888776554322211000 001122233333333333333334555667777777
Q ss_pred CCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEe-ecCCCCeeeEEECCCCcEEEEEeCCCcEEE
Q 002564 505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-EGHTDRITDFCFSEDGKWLLSSGMDGSLRI 583 (907)
Q Consensus 505 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~-~~h~~~I~~l~fspdg~~l~s~s~Dg~I~v 583 (907)
.+.....+.+-+.+..++++||+++++++..|..|+|-.....-.+..| -||+.-|..++.-++ +.|+++|.|++|++
T Consensus 141 ~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 141 SGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL 219 (390)
T ss_pred ccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence 7777777777799999999999999999999999999887765555554 479999999999865 56899999999999
Q ss_pred EEcCCCceeeEeeeC
Q 002564 584 WDVILARQIDAIHVD 598 (907)
Q Consensus 584 wd~~~~~~~~~~~~~ 598 (907)
||+.+|+++.++...
T Consensus 220 Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 220 WDITSGKLLDTCDLS 234 (390)
T ss_pred EecccCCcccccchh
Confidence 999999999877653
No 290
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=2.6e-09 Score=109.84 Aligned_cols=288 Identities=15% Similarity=0.215 Sum_probs=179.4
Q ss_pred EEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc-------eeeeeeecccccCeEEEEEecCCCEEEEEcC
Q 002564 216 LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-------RLQSVIREAHDNAIISLHFFANEPVLMSASA 288 (907)
Q Consensus 216 ~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~-------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~ 288 (907)
+..+.+| ...|..++--.+.. -+++++.|.+|++|.++.. .+..++. +|..+|.++.|..+-+.++++
T Consensus 728 L~nf~GH-~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~-aHkk~i~~igfL~~lr~i~Sc-- 802 (1034)
T KOG4190|consen 728 LCNFTGH-QEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQ-AHKKPIHDIGFLADLRSIASC-- 802 (1034)
T ss_pred eecccCc-HHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhh-hccCcccceeeeeccceeeec--
Confidence 3444444 66777776555554 6889999999999998642 4667777 899999999999998888876
Q ss_pred CCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec--CCCEEE-EEeCCCCEEEEEceecccceeechhhhhHHHhhcc
Q 002564 289 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA--NGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLK 365 (907)
Q Consensus 289 d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~--~g~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 365 (907)
||.|.+||--.+....+... ....+.+..+...+ +...++ .++...+++++|.+...-..++..
T Consensus 803 D~giHlWDPFigr~Laq~~d--apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV----------- 869 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMED--APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV----------- 869 (1034)
T ss_pred cCcceeecccccchhHhhhc--CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe-----------
Confidence 78999997544321111111 11122333333333 333333 347788999999876654443211
Q ss_pred chhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCC
Q 002564 366 MKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445 (907)
Q Consensus 366 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d 445 (907)
-+ .++....++++++.+.|+++++|-++
T Consensus 870 ------------------------------------------cn----------a~~Pna~~R~iaVa~~GN~lAa~LSn 897 (1034)
T KOG4190|consen 870 ------------------------------------------CN----------APGPNALTRAIAVADKGNKLAAALSN 897 (1034)
T ss_pred ------------------------------------------cc----------CCCCchheeEEEeccCcchhhHHhcC
Confidence 11 11233678999999999999999999
Q ss_pred CcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEE-EECCCCceeeeeecCcceeEEEEe
Q 002564 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV-WDFKGRDLKSRWEVGCSLVKIVYH 524 (907)
Q Consensus 446 g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~i~~~~~s 524 (907)
|.|.+.|..+|..+..+. ........++ .|..+.++....|.++.+ |...++....+.+.+..... -..
T Consensus 898 Gci~~LDaR~G~vINswr--------pmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepah-flq 967 (1034)
T KOG4190|consen 898 GCIAILDARNGKVINSWR--------PMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH-FLQ 967 (1034)
T ss_pred CcEEEEecCCCceeccCC--------cccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchh-hhh
Confidence 999999999999887664 2222333333 245567888888888888 87766655444432211100 011
Q ss_pred eCCCEEEEEeCCCeEEEEEccc----ceeEEEee--cCCCCeeeEEECCCCcEEEEEeCCCcEEE
Q 002564 525 RVNGLLATVADDLVIRLFDVVA----LRMVRKFE--GHTDRITDFCFSEDGKWLLSSGMDGSLRI 583 (907)
Q Consensus 525 ~~~~~la~~~~dg~I~v~d~~~----~~~~~~~~--~h~~~I~~l~fspdg~~l~s~s~Dg~I~v 583 (907)
.-|.-++++.....+.||--.. ...+.+++ ...+..++++--|=+.-+..|...|.|++
T Consensus 968 svgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 968 SVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred ccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 1244555655555666663211 01111222 23466788888886666666878888765
No 291
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=98.93 E-value=1.8e-09 Score=93.82 Aligned_cols=105 Identities=19% Similarity=0.337 Sum_probs=98.5
Q ss_pred CChHHHHHHHHhCCCCcchheeccccccCCCccccccCcchHHHHHHHHHHHHHHHh--cCCCHHhHHHHHHHHHHhhcc
Q 002564 785 KNFSAFTDYIKSLSPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEIS--CRNNFEFIQAVIRLFLKIHGE 862 (907)
Q Consensus 785 ~~~~~~~~~l~~~~~s~~~~ei~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~h~~ 862 (907)
||..-+.+.|.+.+|+.|+..+++|.+ .++..||++|.+++. ...+.|++..|+..+|+.||.
T Consensus 1 Nd~~ll~~vl~~~~~~~I~~tv~~Lp~---------------~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~ 65 (110)
T PF04003_consen 1 NDEELLLEVLERIPPSDIENTVRSLPF---------------SYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGS 65 (110)
T ss_pred CHHHHHHHHHhhCCHHHHHHHHHhCCH---------------HHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHH
Confidence 456788999999999999999999976 899999999999887 477999999999999999999
Q ss_pred ccccc-hHHHHHHHHHHHHHHHHHHHHHHhhccceeeehhccc
Q 002564 863 TVRCH-TKLQDKARKLLEVQSAVWQKIDKMFQSARCVVSFLSN 904 (907)
Q Consensus 863 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 904 (907)
.|.+. +++++.|..|++.+++.-+.+.++++.|.+.++|+.+
T Consensus 66 ~l~~~~~~~~~~L~~L~~~l~~~~~~l~~l~~~n~~~L~~l~~ 108 (110)
T PF04003_consen 66 YLSSSSPELRPVLRSLQKILRERLQNLSKLLDLNLGRLDYLLS 108 (110)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999 9999999999999999999999999999999999864
No 292
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.93 E-value=1.1e-08 Score=109.15 Aligned_cols=200 Identities=17% Similarity=0.259 Sum_probs=148.3
Q ss_pred cccEEEEcCCCCCCEEEEEecCCcEEEEecCCC-eE---EEEEcCCCCCEEEEEEcCC--CCEEEEEecCCeEEEEEcc-
Q 002564 139 FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTK-KK---LYEFKGWGSSISSCVSSPA--LDVVAVGCSDGKIHVHNVR- 211 (907)
Q Consensus 139 ~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~-~~---~~~~~~h~~~I~~l~~sp~--~~~la~g~~dg~I~iwd~~- 211 (907)
....+.++|.+ +-++.++..| +.+.|+... .+ ++.+. .-.|-...|+|. ..+-++......-.+|++.
T Consensus 26 ~~~a~si~p~g--rdi~lAsr~g-l~i~dld~p~~ppr~l~h~t--pw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 26 GFNAVSINPSG--RDIVLASRQG-LYIIDLDDPFTPPRWLHHIT--PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred cccceeecccc--chhhhhhhcC-eEEEeccCCCCCceeeeccC--cchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 34566788988 7788898888 777777543 22 22222 223555666664 4566666666778899986
Q ss_pred -CCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc-eeeeeeecccccCeEEEEEecCCCEEEEEcCC
Q 002564 212 -YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEPVLMSASAD 289 (907)
Q Consensus 212 -~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d 289 (907)
+.+.+.-+.++|...|+.+.|.|....++++++.|-.+..||+++. ..+.... .-...-..+.|+...+.+.+.+..
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~-~w~s~asqVkwnyk~p~vlasshg 179 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS-SWRSAASQVKWNYKDPNVLASSHG 179 (1081)
T ss_pred CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee-cccccCceeeecccCcchhhhccC
Confidence 3445555566678899999999999889999999999999999886 4455554 344566889999877777777778
Q ss_pred CcEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEceecc
Q 002564 290 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQDQ 347 (907)
Q Consensus 290 ~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~~~ 347 (907)
+.|.+||...+. ..+...++|...|..+.|.. ....+.+++.||+|+.||.....
T Consensus 180 ~~i~vwd~r~gs---~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 180 NDIFVWDLRKGS---TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred CceEEEeccCCC---cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 899999987665 45667778999999999976 44578899999999999976543
No 293
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.90 E-value=2.7e-07 Score=87.18 Aligned_cols=228 Identities=9% Similarity=0.002 Sum_probs=145.9
Q ss_pred eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEE-EEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCC
Q 002564 102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTC-IMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180 (907)
Q Consensus 102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h 180 (907)
.-.+|+.++..|...+|...+.+... .....+...+... -..... -.+..++.|.++++.+++-+..-......
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~---~~cd~snn~v~~~~r~cd~~--~~~~i~sndht~k~~~~~~~s~~~~~h~~ 157 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHL---YQCDVSNNDVTLVKRYCDLK--FPLNIASNDHTGKTMVVSGDSNKFAVHNQ 157 (344)
T ss_pred cccEEEeccccceeeeecccCcccce---eeecccccchhhhhhhcccc--cceeeccCCcceeEEEEecCcccceeecc
Confidence 45689999999999999998876532 1111121111000 011111 24777888999999887654333222221
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCc--eEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCce
Q 002564 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE--ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR 258 (907)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~--~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~ 258 (907)
.-.+.+++++++++++++.+....|..|.+.... .+.....+....-.+.+|+.... .+|++..||++.|||++...
T Consensus 158 ~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 158 NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccc
Confidence 2338899999999999999999999999987543 23323444455678889998887 89999999999999998763
Q ss_pred ee----eeeecccccCeEEEEEecCCC--EEEEEcCCCcEEEEEccCCCCCcceeE---eccCCC-CCCeEEEEecCCCE
Q 002564 259 LQ----SVIREAHDNAIISLHFFANEP--VLMSASADNSIKMWIFDTTDGDPRLLR---FRSGHS-APPLCIRFYANGRH 328 (907)
Q Consensus 259 ~~----~~~~~~h~~~V~~l~~~~~~~--~l~s~~~d~~i~vw~~~~~~~~~~~~~---~~~~h~-~~v~~i~~~~~g~~ 328 (907)
.. ...+..|.+.+..+.|++.|. +|+..-.-+.+.+.|++.......++. ....|. ..+....|+.++..
T Consensus 237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s 316 (344)
T KOG4532|consen 237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENES 316 (344)
T ss_pred cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcc
Confidence 32 222346899999999998765 444444446677777665432222211 111233 33677777776666
Q ss_pred EEEEeCC
Q 002564 329 ILSAGQD 335 (907)
Q Consensus 329 l~s~~~d 335 (907)
+.+.+.+
T Consensus 317 ~~v~~e~ 323 (344)
T KOG4532|consen 317 NDVKNEL 323 (344)
T ss_pred cccccch
Confidence 6555544
No 294
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.90 E-value=2.6e-06 Score=93.52 Aligned_cols=301 Identities=9% Similarity=0.022 Sum_probs=178.5
Q ss_pred CCeEEEEEEeCCeEEEEEcCcceEEEecCCCC----------cce-EEEEEecCeEEEEEc-CeEEEEeC--CeeEEEEc
Q 002564 25 GTENFVTVSVGKAFHIYNCAKLNLVLVGPQLP----------KKI-RALASYRDYTFAAYG-NHIAVVKR--AHQVATWS 90 (907)
Q Consensus 25 ~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~----------~~I-~~la~~~~~~~~a~g-~~I~vw~~--~~~~~~~~ 90 (907)
.++.+.+++.++.+.-+|..+|+.+-...... ..+ ..+++..+..|+++. +.++.+|. ++.+-+..
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 35566667777899999999999887652211 011 234566667777664 45888884 55555433
Q ss_pred ccccceEEEEeeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCc-ccEEEEcCCCCCCEEEEEecCCcEEEEecC
Q 002564 91 RHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKF-TPTCIMHPDTYLNKVIVGSQEGSLQLWNIS 169 (907)
Q Consensus 91 ~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~ 169 (907)
.......+....+..++.++.+|.+.-+|..+++.. -........ ......+|.-....+++++.+|.+..+|..
T Consensus 148 ~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~----W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 148 VAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVK----WTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred CCCceecCCEEECCEEEEECCCCEEEEEEccCCCEe----eeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence 222212222345677888888999999999999873 333221110 000001111011468888899999999999
Q ss_pred CCeEEEEEcCCCC-------CEEEEEEcC--CCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEE
Q 002564 170 TKKKLYEFKGWGS-------SISSCVSSP--ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLL 240 (907)
Q Consensus 170 ~~~~~~~~~~h~~-------~I~~l~~sp--~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l 240 (907)
+|+.+........ ....+..+| .+..+++++.+|.+..+|..+|+.+.+.... ....+.. ++. .+
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~---~~~~~~~--~~~-~v 297 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG---SVNDFAV--DGG-RI 297 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC---CccCcEE--ECC-EE
Confidence 9998776542110 011112233 3557777888999999999999887665432 1122222 344 56
Q ss_pred EEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeE-
Q 002564 241 ASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLC- 319 (907)
Q Consensus 241 ~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~- 319 (907)
+.++.+|.+..+|..+++.+............+... .+..++.++.||.+...|..++ +.+....-....+.+
T Consensus 298 y~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG----~~~~~~~~~~~~~~s~ 371 (394)
T PRK11138 298 YLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDG----RFVAQQKVDSSGFLSE 371 (394)
T ss_pred EEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCC----CEEEEEEcCCCcceeC
Confidence 677789999999999997765443111111222222 2447788888999988876554 233222222222221
Q ss_pred EEEecCCCEEEEEeCCCCEEEEEc
Q 002564 320 IRFYANGRHILSAGQDRAFRLFSV 343 (907)
Q Consensus 320 i~~~~~g~~l~s~~~dg~i~iwd~ 343 (907)
..+ .+..|+.++.||.|..++.
T Consensus 372 P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 372 PVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CEE--ECCEEEEEeCCceEEEEeC
Confidence 122 2457899999999888764
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.90 E-value=4.4e-08 Score=98.09 Aligned_cols=171 Identities=13% Similarity=0.194 Sum_probs=121.2
Q ss_pred CeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccc
Q 002564 270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQS 349 (907)
Q Consensus 270 ~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~ 349 (907)
....+..++++++++++..+....+++++......+++... .-....+.+.|..+......+..-|-+.-+|+-...
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~-- 140 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD-- 140 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeeccc--
Confidence 34455667788888888888888888877665433444333 223445566666655555554444434333332111
Q ss_pred eeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEE
Q 002564 350 RELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKA 429 (907)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~ 429 (907)
. ....+.-+|-..++.
T Consensus 141 -----------------------------------------------------------~-----~~~~~~lGhvSml~d 156 (390)
T KOG3914|consen 141 -----------------------------------------------------------S-----GRCEPILGHVSMLLD 156 (390)
T ss_pred -----------------------------------------------------------c-----cCcchhhhhhhhhhe
Confidence 0 111222356688999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCcee
Q 002564 430 CTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK 509 (907)
Q Consensus 430 ~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 509 (907)
++++||+++++++..|+.|++-.......+..|. .||..-|..+++-++ ..|+++|.|++|++||+.+|+.+
T Consensus 157 VavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc-------lGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 157 VAVSPDDQFIITADRDEKIRVSRYPATFVIESFC-------LGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred eeecCCCCEEEEecCCceEEEEecCcccchhhhc-------cccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence 9999999999999999999999888877777776 489999999999865 45899999999999999999998
Q ss_pred eeeecC
Q 002564 510 SRWEVG 515 (907)
Q Consensus 510 ~~~~~~ 515 (907)
.++...
T Consensus 229 ~t~dl~ 234 (390)
T KOG3914|consen 229 DTCDLS 234 (390)
T ss_pred cccchh
Confidence 777654
No 296
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=3.4e-08 Score=99.72 Aligned_cols=252 Identities=16% Similarity=0.239 Sum_probs=177.5
Q ss_pred cccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeC-CCCEEEEEcee
Q 002564 267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ-DRAFRLFSVIQ 345 (907)
Q Consensus 267 h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~-dg~i~iwd~~~ 345 (907)
|...|+.+... -..++++++.||.++.|.-... .....+..+..|...+.+++.+-++..+.|.+. |..++++|+.+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i-sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI-SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCc-cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 77777776654 3459999999999999953321 223455666788899999999999999999777 99999999875
Q ss_pred cccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCC
Q 002564 346 DQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPT 425 (907)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~ 425 (907)
-....-+... ++ +.
T Consensus 86 ~DminmiKL~--------------------------------------------------~l----------------Pg 99 (558)
T KOG0882|consen 86 FDMINMIKLV--------------------------------------------------DL----------------PG 99 (558)
T ss_pred cchhhhcccc--------------------------------------------------cC----------------CC
Confidence 4322111000 00 01
Q ss_pred ceEEEEEcCCC---CEEEEE-eCCCcEEEEeCCCCccc-eeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEE
Q 002564 426 AVKACTISACG---NFAVLG-TAGGWIERFNLQSGISR-GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 500 (907)
Q Consensus 426 ~v~~~~~s~~g---~~l~~g-~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 500 (907)
.+.. +...| ..++++ -.+|.+.++|-...... ..+. .-|..+|..+.+.+.+..+++....|.|.-
T Consensus 100 ~a~w--v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk-------klH~sPV~~i~y~qa~Ds~vSiD~~gmVEy 170 (558)
T KOG0882|consen 100 FAEW--VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK-------KLHFSPVKKIRYNQAGDSAVSIDISGMVEY 170 (558)
T ss_pred ceEE--ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec-------ccccCceEEEEeeccccceeeccccceeEe
Confidence 1110 11111 123333 35688999987665533 3332 479999999999999999999999999999
Q ss_pred EECCC------Cceeeee----------ecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeec---------
Q 002564 501 WDFKG------RDLKSRW----------EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEG--------- 555 (907)
Q Consensus 501 wd~~~------~~~~~~~----------~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~--------- 555 (907)
|.... .+....+ +......++.|+|++..+++-..|..|++++..++++++.+..
T Consensus 171 Ws~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ 250 (558)
T KOG0882|consen 171 WSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQP 250 (558)
T ss_pred ecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcc
Confidence 98773 1121122 2236788999999999999999999999999999877655321
Q ss_pred -----------------------CC-CCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEee
Q 002564 556 -----------------------HT-DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH 596 (907)
Q Consensus 556 -----------------------h~-~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 596 (907)
|. ..-+.+.|...|++|+.++.=| |+|.++.++++++.+-
T Consensus 251 ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 251 KSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred ccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 21 1245678999999999998877 9999999998887764
No 297
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.87 E-value=6.6e-08 Score=90.80 Aligned_cols=187 Identities=12% Similarity=0.178 Sum_probs=116.0
Q ss_pred EEEEEecCCcEEEEecCCCeEE------------EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEE-E
Q 002564 153 KVIVGSQEGSLQLWNISTKKKL------------YEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT-F 219 (907)
Q Consensus 153 ~l~~~s~dg~i~iwd~~~~~~~------------~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~-~ 219 (907)
.++++..++.+...+.-++.+. +.+..|..+-.+-+.+-.+..+++++.||.+.+++.+....+.. +
T Consensus 49 ~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i 128 (319)
T KOG4714|consen 49 ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRI 128 (319)
T ss_pred eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhc
Confidence 4666666666665554444333 33333333333333444456799999999999999775322211 1
Q ss_pred eecCCCCEEEEEEecCCCCEEEEEe-----CCCcEEEEECCCceeeeeeecccccCeEEEEEecCCC-EEEEEcCCCcEE
Q 002564 220 THSMRGAVTALAFSSDGQPLLASGA-----SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIK 293 (907)
Q Consensus 220 ~~~~~~~v~~l~fs~dg~~~l~sg~-----~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~i~ 293 (907)
...+.+ -.+.+....+. ++.++. .-+..+.|+++..+....-. .....|.+++-+|..+ .+++|+.||.+.
T Consensus 129 ~~~~~~-~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~-~~~~~v~~l~~hp~qq~~v~cgt~dg~~~ 205 (319)
T KOG4714|consen 129 PSIHSG-SASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSK-KALDAVTALCSHPAQQHLVCCGTDDGIVG 205 (319)
T ss_pred cccccc-ccccceeeccc-EEecCCcceEeeccceeeecccccccccccc-cccccchhhhCCcccccEEEEecCCCeEE
Confidence 111111 12222333344 333322 23456666665443332222 1233499999999665 667788899999
Q ss_pred EEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEcee
Q 002564 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSVIQ 345 (907)
Q Consensus 294 vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~~~ 345 (907)
+||.+... .....+..|..++..+.|+| ++..|++++.||.+.-||..+
T Consensus 206 l~d~rn~~---~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 206 LWDARNVA---MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEEccccc---chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99988763 34556678999999999999 889999999999999999754
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.86 E-value=5.5e-06 Score=84.52 Aligned_cols=183 Identities=14% Similarity=0.057 Sum_probs=123.6
Q ss_pred eEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccC-cCCcEEEEEEcCCCCEEEEEecC--------C
Q 002564 427 VKACTIS-ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA-HNGEVVGVACDSTNTLMISAGYH--------G 496 (907)
Q Consensus 427 v~~~~~s-~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~d--------g 496 (907)
...+++. ++ ..++++... .+.++|..+++......... .. .....+.++++++|++.++.... |
T Consensus 42 ~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~----~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g 115 (246)
T PF08450_consen 42 PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVLADLPD----GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPG 115 (246)
T ss_dssp EEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEEEEEET----TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSE
T ss_pred CceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEEeeccC----CCcccCCCceEEEcCCCCEEEEecCCCcccccccc
Confidence 5666777 55 455555554 45566988886554443100 12 44678899999999977776543 5
Q ss_pred eEEEEECCCCceeeeeecCcceeEEEEeeCCCEEE-EEeCCCeEEEEEcccce-------eEEEeecCCCCeeeEEECCC
Q 002564 497 DIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA-TVADDLVIRLFDVVALR-------MVRKFEGHTDRITDFCFSED 568 (907)
Q Consensus 497 ~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la-~~~~dg~I~v~d~~~~~-------~~~~~~~h~~~I~~l~fspd 568 (907)
.|..++.. ++.......-...+.++|+|+++.|+ +-+..+.|..+++.... ....+....+..-.+++..+
T Consensus 116 ~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~ 194 (246)
T PF08450_consen 116 SVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD 194 (246)
T ss_dssp EEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT
T ss_pred ceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC
Confidence 67777777 55555555556778999999999776 45667899999986321 12223333334778999999
Q ss_pred CcEEEEEeCCCcEEEEEcCCCceeeEeeeC-CceEEEEE-CCCCceEEEEE
Q 002564 569 GKWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSL-SPNMDVLATAH 617 (907)
Q Consensus 569 g~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~-~~v~~l~~-spdg~~lat~~ 617 (907)
|++.++....+.|.++|.. |+++..+..+ ..+++++| -|+.+.|...+
T Consensus 195 G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 195 GNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp S-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 9988887788999999976 9999999887 56999999 46766665544
No 299
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.84 E-value=1.5e-06 Score=94.85 Aligned_cols=164 Identities=12% Similarity=0.075 Sum_probs=102.4
Q ss_pred CcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCE-EEEEec---CCeEEEEEccCCceEEEEeecCCCCEEEEEEecCC
Q 002564 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDV-VAVGCS---DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG 236 (907)
Q Consensus 161 g~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~-la~g~~---dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg 236 (907)
..|.+-|.. |...+.+.... .+....|+|+|+. ++..+. +..|.++|+.+++...-.. . .+......|+|||
T Consensus 169 ~~l~~~d~d-g~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~-~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYT-LTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-S-QGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCC-CCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-C-CCcEEeeEECCCC
Confidence 356666664 33344344333 7888999999984 664433 3569999998887554433 2 4667788899999
Q ss_pred CCEEEEEeCC--CcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEc-CCCcEEEEEccCCCCCcceeEeccCC
Q 002564 237 QPLLASGASS--GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGH 313 (907)
Q Consensus 237 ~~~l~sg~~d--g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h 313 (907)
+.++++.+.+ ..|.++|+.+++... +. .+........|+|||+.|+..+ ..+.-.+|.++..++..+.+.. .+.
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~ 321 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQ-IT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK 321 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEE-cc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCC
Confidence 8566655544 568888988876443 33 2333344568999998776655 3455455555544443322221 122
Q ss_pred CCCCeEEEEecCCCEEEEEeCC
Q 002564 314 SAPPLCIRFYANGRHILSAGQD 335 (907)
Q Consensus 314 ~~~v~~i~~~~~g~~l~s~~~d 335 (907)
. ...|+|||+.++..+..
T Consensus 322 ~----~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 322 N----NSSVSTYKNYIVYSSRE 339 (419)
T ss_pred c----CceECCCCCEEEEEEcC
Confidence 1 24899999998876643
No 300
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.84 E-value=2.3e-05 Score=74.13 Aligned_cols=106 Identities=14% Similarity=0.156 Sum_probs=80.6
Q ss_pred eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCC
Q 002564 102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWG 181 (907)
Q Consensus 102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~ 181 (907)
-|++++.|+..|.+.+-+.++++. +..+..-........+.+++ ..+.+|+.|++.+..|.++..+++..+..+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~----~w~f~~~~~vk~~a~~d~~~--glIycgshd~~~yalD~~~~~cVykskcgG 135 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQ----IWNFVILETVKVRAQCDFDG--GLIYCGSHDGNFYALDPKTYGCVYKSKCGG 135 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhh----eeeeeehhhhccceEEcCCC--ceEEEecCCCcEEEecccccceEEecccCC
Confidence 588899999999999999999987 55555555555666788888 789999999999999999999999988755
Q ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEEccCC
Q 002564 182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYD 213 (907)
Q Consensus 182 ~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~ 213 (907)
+...+-+..|-...|..+...|.+.--+..++
T Consensus 136 ~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 136 GTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred ceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 55555566663334555555566665555544
No 301
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.83 E-value=3e-06 Score=81.93 Aligned_cols=147 Identities=19% Similarity=0.170 Sum_probs=97.4
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEccCCc--eEEEEe--ecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeee
Q 002564 186 SCVSSPALDVVAVGCSDGKIHVHNVRYDE--ELVTFT--HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQS 261 (907)
Q Consensus 186 ~l~~sp~~~~la~g~~dg~I~iwd~~~~~--~~~~~~--~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~ 261 (907)
.++.+++|++||+-- |..|.|-..+.+- .+.+.. ......=..++||||+. +||.+...|+|++||+.... +.
T Consensus 2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~vfdl~g~~-lf 78 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIRVFDLMGSE-LF 78 (282)
T ss_pred ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEEEEecccce-eE
Confidence 367788999888754 5677777655431 222222 22233557899999999 99999999999999987543 33
Q ss_pred eeeccc------ccCeEEEEEecCC------CEEEEEcCCCcEEEEEccCCC-CCcceeEe---ccCCCCCCeEEEEecC
Q 002564 262 VIREAH------DNAIISLHFFANE------PVLMSASADNSIKMWIFDTTD-GDPRLLRF---RSGHSAPPLCIRFYAN 325 (907)
Q Consensus 262 ~~~~~h------~~~V~~l~~~~~~------~~l~s~~~d~~i~vw~~~~~~-~~~~~~~~---~~~h~~~v~~i~~~~~ 325 (907)
.+..++ ...|.++.|.+-. ..|++-..+|.++-|-+..++ ...+.... ...+...|.++.|+|.
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 444233 3567778786532 256666778888888765432 22222222 2235779999999999
Q ss_pred CCEEEEEeCC
Q 002564 326 GRHILSAGQD 335 (907)
Q Consensus 326 g~~l~s~~~d 335 (907)
.+.|+.||..
T Consensus 159 h~LLlVgG~~ 168 (282)
T PF15492_consen 159 HRLLLVGGCE 168 (282)
T ss_pred CCEEEEeccC
Confidence 8888887754
No 302
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.81 E-value=3.7e-06 Score=81.29 Aligned_cols=243 Identities=13% Similarity=0.181 Sum_probs=128.4
Q ss_pred EEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEe---ccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccce
Q 002564 274 LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF---RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR 350 (907)
Q Consensus 274 l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~---~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~ 350 (907)
++.+++|+.||..- |..|.+-..... -..++.. .+.....=..++|+||+..|+.+...|+|++||+.... ..
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Dd--f~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf 78 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDD--FSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LF 78 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCC--chheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eE
Confidence 45667787666653 666665532211 1112111 12222344789999999999999999999999986422 22
Q ss_pred eechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEE
Q 002564 351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC 430 (907)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~ 430 (907)
.++... .+ ..+ ....|..+
T Consensus 79 ~I~p~~---------------------~~------~~d----------------------------------~~~Aiagl 97 (282)
T PF15492_consen 79 VIPPAM---------------------SF------PGD----------------------------------LSDAIAGL 97 (282)
T ss_pred EcCccc---------------------cc------CCc----------------------------------cccceeee
Confidence 221100 00 000 00122222
Q ss_pred EEcCC------CCEEEEEeCCCcEEEEeCCCC-----ccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCe--
Q 002564 431 TISAC------GNFAVLGTAGGWIERFNLQSG-----ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD-- 497 (907)
Q Consensus 431 ~~s~~------g~~l~~g~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~-- 497 (907)
.|.+- ...+++-+..|.++-|-+..+ +....+. ....+...|.++.++|..++|+.||....
T Consensus 98 ~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs-----f~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~ 172 (282)
T PF15492_consen 98 IFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS-----FSSHYPHGINSAVYHPKHRLLLVGGCEQNQD 172 (282)
T ss_pred EeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE-----ecccCCCceeEEEEcCCCCEEEEeccCCCCC
Confidence 22111 113444455666665554322 1122221 01234678999999999998888874321
Q ss_pred ---------EEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCC
Q 002564 498 ---------IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED 568 (907)
Q Consensus 498 ---------i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspd 568 (907)
+.-|.+-++.+.. ....+.+.+.-.... +-.+|.+-+.+...........|..|..|||
T Consensus 173 ~~s~a~~~GLtaWRiL~~~Pyy---------k~v~~~~~~~~~~~~---~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd 240 (282)
T PF15492_consen 173 GMSKASSCGLTAWRILSDSPYY---------KQVTSSEDDITASSK---RRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD 240 (282)
T ss_pred ccccccccCceEEEEcCCCCcE---------EEccccCcccccccc---ccceeeccceeeeeccccCCCceEEEEECCC
Confidence 2223222221111 001111111111111 1123333333322222234577999999999
Q ss_pred CcEEEEEeCCCcEEEEEcCCCceeeEeeeC
Q 002564 569 GKWLLSSGMDGSLRIWDVILARQIDAIHVD 598 (907)
Q Consensus 569 g~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~ 598 (907)
|+.||+...+|.|.+|++++-++...+..+
T Consensus 241 g~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 241 GSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred CCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 999999999999999999998887776543
No 303
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.81 E-value=3.5e-05 Score=72.97 Aligned_cols=135 Identities=17% Similarity=0.223 Sum_probs=95.3
Q ss_pred CEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEE-EE
Q 002564 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVT-AL 230 (907)
Q Consensus 152 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~-~l 230 (907)
.++++|+..+.+.--|..+|+.+.+-.- ..+|.+-+.- -|++++.|+..|.+.+.+.++|.....+..- +.|. ..
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--~~vk~~a 99 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--ETVKVRA 99 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh--hhhccce
Confidence 6799999999999999999999876432 3444443333 5778999999999999999999988888764 2332 23
Q ss_pred EEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcE
Q 002564 231 AFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSI 292 (907)
Q Consensus 231 ~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i 292 (907)
...+++. ++..|+.|++....|..+..++...+ ...+...+-+..|....|..+...|.+
T Consensus 100 ~~d~~~g-lIycgshd~~~yalD~~~~~cVyksk-cgG~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 100 QCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSK-CGGGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred EEcCCCc-eEEEecCCCcEEEecccccceEEecc-cCCceeccceecCCCceEEEEeccceE
Confidence 3456777 89999999999999999998888876 222222333444522234333334433
No 304
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.79 E-value=0.00077 Score=76.10 Aligned_cols=566 Identities=13% Similarity=0.049 Sum_probs=298.8
Q ss_pred CCcceeEEEcCCeEEEEEEeCCeEEEEEcCcc----eEEEec--CCCCcceEEEEEec-----CeEEEEEcC-----eEE
Q 002564 15 SSVPFSVQRLGTENFVTVSVGKAFHIYNCAKL----NLVLVG--PQLPKKIRALASYR-----DYTFAAYGN-----HIA 78 (907)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~v~iwd~~~~----~~~~~~--~~~~~~I~~la~~~-----~~~~~a~g~-----~I~ 78 (907)
..++-|+.+.+...+.++|.-|.=++-.+.+. ..+-.. -.--++|..|++-. .+.++.+.+ .++
T Consensus 306 ~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLR 385 (1096)
T KOG1897|consen 306 TSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLR 385 (1096)
T ss_pred cchhhhhhcccCceEEEeccCCceeeEEccccCCCCchhhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEE
Confidence 44566667778888888887333244444331 111111 12245787777543 356666633 278
Q ss_pred EEeCCee---EEE--EcccccceEEEE--ee---CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCC
Q 002564 79 VVKRAHQ---VAT--WSRHSAKVNLLL--LF---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPD 148 (907)
Q Consensus 79 vw~~~~~---~~~--~~~h~~~V~~l~--~~---g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 148 (907)
+.+.+-. ++. +.| -..+..+. ++ .++|+.+- -+.-++..+...-. ......-.....+.+++.-
T Consensus 386 iiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf-~~eTrvl~i~~e~e----e~~~~gf~~~~~Tif~S~i 459 (1096)
T KOG1897|consen 386 IIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSF-ISETRVLNISEEVE----ETEDPGFSTDEQTIFCSTI 459 (1096)
T ss_pred EEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEe-ccceEEEEEccceE----EeccccccccCceEEEEcc
Confidence 8775432 222 444 33344444 21 33555443 33334445443211 0111111122334444443
Q ss_pred CCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEE
Q 002564 149 TYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVT 228 (907)
Q Consensus 149 ~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~ 228 (907)
.+ +.|+-...+ .|++++-. ..+..+.. .+.++....+.+...+++++.++.+...++..+.............|.
T Consensus 460 ~g-~~lvQvTs~-~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~eva 534 (1096)
T KOG1897|consen 460 NG-NQLVQVTSN-SIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVA 534 (1096)
T ss_pred CC-ceEEEEecc-cEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeE
Confidence 33 344444333 47887743 34444444 455666666666667888887777777777765533333333356899
Q ss_pred EEEEecC--CCC---EEEEEeCCCcEEEEE-CCCceeeeeeecc---cccCeEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 002564 229 ALAFSSD--GQP---LLASGASSGVISIWN-LEKRRLQSVIREA---HDNAIISLHFFANEPVLMSASADNSIKMWIFDT 299 (907)
Q Consensus 229 ~l~fs~d--g~~---~l~sg~~dg~I~iwd-~~~~~~~~~~~~~---h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~ 299 (907)
|+.++|- ++. ++++|.++..+.+.- +.+...+...... -...|.-..+-.|..+|.++..||.+..+.++.
T Consensus 535 CLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 535 CLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred EEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence 9999975 343 888998776655443 3333333322111 123455556666678999999999999999988
Q ss_pred CCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEe
Q 002564 300 TDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAF 379 (907)
Q Consensus 300 ~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 379 (907)
.++...-.+...-...|+.--.|+..++.-+.+..|+-..+|.....-....++... +. .
T Consensus 615 ~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~ke-------------------v~-~ 674 (1096)
T KOG1897|consen 615 NTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKE-------------------VN-H 674 (1096)
T ss_pred ccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHH-------------------hh-h
Confidence 776444333333445677777777755555555556666666543222211111110 00 0
Q ss_pred eecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCC--------------
Q 002564 380 DCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-------------- 445 (907)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-------------- 445 (907)
.+......-.+.++.+..+. +++..+..-+. .+.... .-......+++.+....+.+.+..
T Consensus 675 ~c~f~s~a~~d~l~~~~~~~--l~i~tid~iqk-l~irtv--pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~ 749 (1096)
T KOG1897|consen 675 MCPFNSDAYPDSLASANGGA--LTIGTIDEIQK-LHIRTV--PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEV 749 (1096)
T ss_pred hcccccccCCceEEEecCCc--eEEEEecchhh-cceeee--cCCCChhheEecccceEEEEEecccccchhhcCCcceE
Confidence 11111112223344443332 22222221110 000000 111344555665544444433321
Q ss_pred CcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCC-CCEEEEEec----------CCeEEEEECCCCc---eeee
Q 002564 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST-NTLMISAGY----------HGDIKVWDFKGRD---LKSR 511 (907)
Q Consensus 446 g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~----------dg~i~iwd~~~~~---~~~~ 511 (907)
..++++|-++-+......... ....-.+.+..|..| +.++++|.. .|.|.++.+.... .+..
T Consensus 750 s~l~vlD~nTf~vl~~hef~~----~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e 825 (1096)
T KOG1897|consen 750 SFLRVLDQNTFEVLSSHEFER----NETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAE 825 (1096)
T ss_pred EEEEEecCCceeEEeeccccc----cceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeee
Confidence 135556655544433222100 011123455557766 677777652 4788888887632 2333
Q ss_pred eecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEE--EcCCC
Q 002564 512 WEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW--DVILA 589 (907)
Q Consensus 512 ~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vw--d~~~~ 589 (907)
....+.+.++..- +|+++|.- +..|++|+..+.+.++.-..|..++..+...-.|..++.|..=+++.+- +-..|
T Consensus 826 ~~v~Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg 902 (1096)
T KOG1897|consen 826 TVVKGAVYALVEF-NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEG 902 (1096)
T ss_pred eeeccceeehhhh-CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCC
Confidence 3444555555443 46666654 5789999999998888777889999999999999999999877766554 44455
Q ss_pred ceeeEeee--CCceEEEEECCCCceEEEEEecCCeEEE
Q 002564 590 RQIDAIHV--DVSITALSLSPNMDVLATAHVDQNGVYL 625 (907)
Q Consensus 590 ~~~~~~~~--~~~v~~l~~spdg~~lat~~~d~~~i~l 625 (907)
...-..+. +..++++.+-.+..++. +..+++ +++
T Consensus 903 ~f~evArD~~p~Wmtaveil~~d~ylg-ae~~gN-lf~ 938 (1096)
T KOG1897|consen 903 NFEEVARDYNPNWMTAVEILDDDTYLG-AENSGN-LFT 938 (1096)
T ss_pred ceEEeehhhCccceeeEEEecCceEEe-eccccc-EEE
Confidence 55544443 44477787765555544 444553 444
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.79 E-value=7.2e-08 Score=90.56 Aligned_cols=166 Identities=19% Similarity=0.295 Sum_probs=105.9
Q ss_pred eeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeE-EEEEcCCCCCEEEEEEcCCCCEEEEEe-----cCC
Q 002564 130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKK-LYEFKGWGSSISSCVSSPALDVVAVGC-----SDG 203 (907)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~-~~~~~~h~~~I~~l~~sp~~~~la~g~-----~dg 203 (907)
...+..+.+.......+-.+ +.++++..||.+.+.+.+.-.. .+....-...--+.+....++.+.++. .-+
T Consensus 82 ~~~~a~~sep~p~~~~s~~~--t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 82 FKVLAKNSEIDPNDACTMTD--NRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred eeeeeccCCCCCcccccccC--CceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence 33444344333333334344 6799999999999998754111 111111111111122223344444332 123
Q ss_pred eEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecC-CCE
Q 002564 204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN-EPV 282 (907)
Q Consensus 204 ~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~ 282 (907)
..+.|+++..+.+..-... ...|++++-+|..++++++|+.||.+.+||.+.......+..+|..++..+.|+|. +..
T Consensus 160 ~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred ceeeecccccccccccccc-cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 4566666543333222222 24599999999888899999999999999999986666665699999999999995 458
Q ss_pred EEEEcCCCcEEEEEcc
Q 002564 283 LMSASADNSIKMWIFD 298 (907)
Q Consensus 283 l~s~~~d~~i~vw~~~ 298 (907)
|++++.||.+..||-.
T Consensus 239 Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAS 254 (319)
T ss_pred eeEecCCCcEEEEcCC
Confidence 9999999999999765
No 306
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.78 E-value=1.8e-07 Score=89.94 Aligned_cols=161 Identities=16% Similarity=0.234 Sum_probs=111.3
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEE---EeecC----CCCEEEEEEecCCCCEEEEEeCCCcEE
Q 002564 178 KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT---FTHSM----RGAVTALAFSSDGQPLLASGASSGVIS 250 (907)
Q Consensus 178 ~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~---~~~~~----~~~v~~l~fs~dg~~~l~sg~~dg~I~ 250 (907)
..|.-.|.++.|..|...++++. |-.|.+|++.--..-.. +..+. ..-|++..|+|....++...+..|.|+
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 35667788899999988877754 57899999874332222 22221 236889999998766777778899999
Q ss_pred EEECCCceee------eee--e-------cccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCC-
Q 002564 251 IWNLEKRRLQ------SVI--R-------EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS- 314 (907)
Q Consensus 251 iwd~~~~~~~------~~~--~-------~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~- 314 (907)
+-|++...+. ... . .+-...|..+.|+++|+++++-+. .+|++||.+.... ++.+..-|.
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~---pikTi~~h~~ 323 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN---PIKTIPMHCD 323 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC---CceeechHHH
Confidence 9999843211 000 0 123457889999999999888764 6899999987653 333332221
Q ss_pred -----------CCC---eEEEEecCCCEEEEEeCCCCEEEEEc
Q 002564 315 -----------APP---LCIRFYANGRHILSAGQDRAFRLFSV 343 (907)
Q Consensus 315 -----------~~v---~~i~~~~~g~~l~s~~~dg~i~iwd~ 343 (907)
..| ..+.|+.|.+.+++|+..+..-++-+
T Consensus 324 l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 324 LMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 122 45788889999999999888887764
No 307
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.75 E-value=3.6e-06 Score=92.02 Aligned_cols=344 Identities=10% Similarity=0.026 Sum_probs=191.4
Q ss_pred EEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEE
Q 002564 195 VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISL 274 (907)
Q Consensus 195 ~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 274 (907)
.+.+|+..|.++|+-+.+++.++.+......+-+.--++...+.+| ..+..|....|. ..|.-.+.--
T Consensus 68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l-~~~~~~~~~~~g-----------D~HHp~~s~t 135 (635)
T PRK02888 68 GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVL-GEGARGGKYLNG-----------DTHHPHMSFT 135 (635)
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHh-hccccCCcccCC-----------CcCCCccccc
Confidence 3568888999999999999998887654333333333333333223 111111111221 1122111111
Q ss_pred EEecCCCEEEEEcC-CCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEe--cCCCEEEEEeCCCCEEEEEceeccccee
Q 002564 275 HFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY--ANGRHILSAGQDRAFRLFSVIQDQQSRE 351 (907)
Q Consensus 275 ~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~--~~g~~l~s~~~dg~i~iwd~~~~~~~~~ 351 (907)
.=..||++|+.-.. +..|-.-+++..... +++. ......+..++|- |+..+++.+++...=
T Consensus 136 ~g~ydGr~~findk~n~Rvari~l~~~~~~-~i~~--iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~P------------- 199 (635)
T PRK02888 136 DGTYDGRYLFINDKANTRVARIRLDVMKCD-KITE--LPNVQGIHGLRPQKIPRTGYVFCNGEFRIP------------- 199 (635)
T ss_pred CCccceeEEEEecCCCcceEEEECccEeec-eeEe--CCCccCccccCccccCCccEEEeCcccccc-------------
Confidence 11236777777664 344544444433221 2222 1233445555554 666777776542100
Q ss_pred echhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEE
Q 002564 352 LSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACT 431 (907)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~ 431 (907)
++ .++..+.......+.+.+.|..+......+... .....++
T Consensus 200 ---------------------lp------------nDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-----gnpd~v~ 241 (635)
T PRK02888 200 ---------------------LP------------NDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-----GNLDNVD 241 (635)
T ss_pred ---------------------cC------------CCCCEeecccceeEEEEEEECccceEEEEEEeC-----CCcccce
Confidence 00 000000011112233334444443332222221 3456778
Q ss_pred EcCCCCEEEEEeCC---C-cEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCC--
Q 002564 432 ISACGNFAVLGTAG---G-WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG-- 505 (907)
Q Consensus 432 ~s~~g~~l~~g~~d---g-~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-- 505 (907)
++++|+++++.+.+ | ++...+.........+.. .. .-++.++|++... .++.|.+.|..+
T Consensus 242 ~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni----------~~--iea~vkdGK~~~V--~gn~V~VID~~t~~ 307 (635)
T PRK02888 242 TDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI----------AR--IEEAVKAGKFKTI--GGSKVPVVDGRKAA 307 (635)
T ss_pred ECCCCCEEEEeccCcccCcceeeeccccCceEEEEch----------HH--HHHhhhCCCEEEE--CCCEEEEEECCccc
Confidence 99999999888632 1 222222221111111100 00 0023456776665 367899999988
Q ss_pred ---CceeeeeecCcceeEEEEeeCCCEEEEEeC-CCeEEEEEccccee------------EEEeecCCCCeeeEEECCCC
Q 002564 506 ---RDLKSRWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRM------------VRKFEGHTDRITDFCFSEDG 569 (907)
Q Consensus 506 ---~~~~~~~~~~~~i~~~~~s~~~~~la~~~~-dg~I~v~d~~~~~~------------~~~~~~h~~~I~~l~fspdg 569 (907)
.+....+..+.....+.++|||+++++++. +.+|.|+|+.+.+. +.+..--.+ -...+|.++|
T Consensus 308 ~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G 386 (635)
T PRK02888 308 NAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRG 386 (635)
T ss_pred cCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCC
Confidence 577888888899999999999998887765 78999999988552 444443233 3457899999
Q ss_pred cEEEEEeCCCcEEEEEcCC----------CceeeEeeeCCceEEEEE------CCCCceEEEEEec
Q 002564 570 KWLLSSGMDGSLRIWDVIL----------ARQIDAIHVDVSITALSL------SPNMDVLATAHVD 619 (907)
Q Consensus 570 ~~l~s~s~Dg~I~vwd~~~----------~~~~~~~~~~~~v~~l~~------spdg~~lat~~~d 619 (907)
....|-..|..|..||+.+ ...++.+..+..+-.+.- .|||+||++...-
T Consensus 387 ~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~ 452 (635)
T PRK02888 387 NAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKF 452 (635)
T ss_pred CEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcccc
Confidence 8888888999999999987 345566665554444444 7899999887543
No 308
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=4.9e-07 Score=91.61 Aligned_cols=275 Identities=14% Similarity=0.104 Sum_probs=180.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCeEEEEEccC--Cc-eEEEEeecCCCCEEEEEEecCCCCEEEEEeC-CCcEEEEECC
Q 002564 180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY--DE-ELVTFTHSMRGAVTALAFSSDGQPLLASGAS-SGVISIWNLE 255 (907)
Q Consensus 180 h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~--~~-~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~-dg~I~iwd~~ 255 (907)
|...|+.+..+. .+++.+++.||.++.|.-.. +- .+..+.. |-+.|.+++.+-+|. ++.+.+. |..++++|++
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFra-HL~~I~sl~~S~dg~-L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRA-HLGVILSLAVSYDGW-LFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHH-HHHHHHhhhccccce-eEeeccCcccceeEEEee
Confidence 666777766554 47999999999999997542 21 2222333 467899999999998 8888676 9999999999
Q ss_pred CceeeeeeecccccCeEEEEEecCCC--EEEEE-cCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEE
Q 002564 256 KRRLQSVIREAHDNAIISLHFFANEP--VLMSA-SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA 332 (907)
Q Consensus 256 ~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~-~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~ 332 (907)
+-..+..++...-..-.++..+++.. .++.+ -.++.+.++|-.. ..........-|..+|.++.+.+-+..+++.
T Consensus 85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~--d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFG--DFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcC--CcCccceecccccCceEEEEeeccccceeec
Confidence 88776555522211122222233221 33333 3467788885433 2334455556799999999999999999999
Q ss_pred eCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeecee
Q 002564 333 GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVL 412 (907)
Q Consensus 333 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~ 412 (907)
...|.|..|.....-+ +.... ..|.+..
T Consensus 163 D~~gmVEyWs~e~~~q---fPr~~----------------------------------------------l~~~~K~--- 190 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQ---FPRTN----------------------------------------------LNFELKH--- 190 (558)
T ss_pred cccceeEeecCCCccc---Ccccc----------------------------------------------ccccccc---
Confidence 9999999998763100 00000 0011110
Q ss_pred cceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccc------------------------
Q 002564 413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSER------------------------ 468 (907)
Q Consensus 413 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~------------------------ 468 (907)
+..+-.........+++.++|+|..+..-..|..|++++..+|..++.+......
T Consensus 191 -eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaver 269 (558)
T KOG0882|consen 191 -ETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVER 269 (558)
T ss_pred -cchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHh
Confidence 0011111223467889999999999999999999999999999888776433221
Q ss_pred cccCcC-CcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeee
Q 002564 469 SNYAHN-GEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE 513 (907)
Q Consensus 469 ~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 513 (907)
....|. ..-+.+.|+..+++|+-++.= -|++.++.++...+.+.
T Consensus 270 elek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 270 ELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNTVVRILG 314 (558)
T ss_pred hHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCeEEEEec
Confidence 111222 234567888899999887763 47899999888777664
No 309
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.70 E-value=5.9e-06 Score=84.08 Aligned_cols=220 Identities=19% Similarity=0.172 Sum_probs=140.1
Q ss_pred CCcEEEEecCCCCccccceeeEecCCCcccEE-EEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEc
Q 002564 112 DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTC-IMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSS 190 (907)
Q Consensus 112 dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~s 190 (907)
+|+|..||..+++. +-+........... ...+++ +++++++.++.|+.||..+|+.+..+.. ...+.... .
T Consensus 2 ~g~l~~~d~~tG~~----~W~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~ 73 (238)
T PF13360_consen 2 DGTLSALDPRTGKE----LWSYDLGPGIGGPVATAVPDG--GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-V 73 (238)
T ss_dssp TSEEEEEETTTTEE----EEEEECSSSCSSEEETEEEET--TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-E
T ss_pred CCEEEEEECCCCCE----EEEEECCCCCCCccceEEEeC--CEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-e
Confidence 68899999988888 55555432222222 133344 6788889999999999999999998875 33222222 2
Q ss_pred CCCCEEEEEecCCeEEEEEccCCceEEEE-eecC--CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeccc
Q 002564 191 PALDVVAVGCSDGKIHVHNVRYDEELVTF-THSM--RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH 267 (907)
Q Consensus 191 p~~~~la~g~~dg~I~iwd~~~~~~~~~~-~~~~--~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h 267 (907)
.++..+++++.++.+..+|..+|+.+... .... ......+....++. .++++..++.|..+|+.+|+.+..... .
T Consensus 74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~-~ 151 (238)
T PF13360_consen 74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD-RLYVGTSSGKLVALDPKTGKLLWKYPV-G 151 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT-EEEEEETCSEEEEEETTTTEEEEEEES-S
T ss_pred ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecC-EEEEEeccCcEEEEecCCCcEEEEeec-C
Confidence 34556777778899999999999999885 3221 11122333333355 677888899999999999999888773 3
Q ss_pred ccC----------eEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCC
Q 002564 268 DNA----------IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337 (907)
Q Consensus 268 ~~~----------V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~ 337 (907)
... +.+-....++ .++.++.++.+..+|+.++. .+-... ...+.. ....++..++.++.++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~----~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 152 EPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE----KLWSKP--ISGIYS-LPSVDGGTLYVTSSDGR 223 (238)
T ss_dssp TT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE----EEEEEC--SS-ECE-CEECCCTEEEEEETTTE
T ss_pred CCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC----EEEEec--CCCccC-CceeeCCEEEEEeCCCE
Confidence 322 1222222344 67777777753333666542 222211 111111 13457778888889999
Q ss_pred EEEEEceecccc
Q 002564 338 FRLFSVIQDQQS 349 (907)
Q Consensus 338 i~iwd~~~~~~~ 349 (907)
+..||+.+++..
T Consensus 224 l~~~d~~tG~~~ 235 (238)
T PF13360_consen 224 LYALDLKTGKVV 235 (238)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEECCCCCEE
Confidence 999999887754
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.69 E-value=1.5e-05 Score=80.97 Aligned_cols=216 Identities=14% Similarity=0.104 Sum_probs=138.4
Q ss_pred CCeEEEEEcCcceEEEecCCC--CcceEEEEE-ecCeEEEEEc-CeEEEEeC--CeeEEEEcccccceEEEEeeCCEEEE
Q 002564 35 GKAFHIYNCAKLNLVLVGPQL--PKKIRALAS-YRDYTFAAYG-NHIAVVKR--AHQVATWSRHSAKVNLLLLFGEHILS 108 (907)
Q Consensus 35 ~~~v~iwd~~~~~~~~~~~~~--~~~I~~la~-~~~~~~~a~g-~~I~vw~~--~~~~~~~~~h~~~V~~l~~~g~~l~s 108 (907)
+++|..||..+|+.+...... .....+.++ .....|++.+ +.++.||. ++.+.+..............++.++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v 81 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYV 81 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccccc
Confidence 578999999999988876331 233333344 5556666644 44999994 66666644311111113567888888
Q ss_pred EecCCcEEEEecCCCCccccceeeE-ecCC---CcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCC-
Q 002564 109 IDIDGNMFIWAFKGIEENLAPVGHV-KLDD---KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS- 183 (907)
Q Consensus 109 ~~~dg~v~vWd~~~~~~~~~~~~~~-~~~~---~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~- 183 (907)
++.++.+..+|..+++. +-+. .... ...........+ +.++++..++.|..+|.++|+.+.........
T Consensus 82 ~~~~~~l~~~d~~tG~~----~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 82 GTSDGSLYALDAKTGKV----LWSIYLTSSPPAGVRSSSSPAVDG--DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EETTSEEEEEETTTSCE----EEEEEE-SSCTCSTB--SEEEEET--TEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccceeeeEecccCCcce----eeeeccccccccccccccCceEec--CEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 88899999999999988 4442 2211 111222222234 67899988999999999999999988764422
Q ss_pred ---------EEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 002564 184 ---------ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL 254 (907)
Q Consensus 184 ---------I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~ 254 (907)
+.+-....++ .+.++..+|.+.-+|+.+++.+.... . ..+..+ ...++. .+++++.++.|..||+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~--~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-I--SGIYSL-PSVDGG-TLYVTSSDGRLYALDL 229 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-S--S-ECEC-EECCCT-EEEEEETTTEEEEEET
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-C--CCccCC-ceeeCC-EEEEEeCCCEEEEEEC
Confidence 1222233344 77777777754444999999765333 2 223332 345566 6777778999999999
Q ss_pred CCceeeee
Q 002564 255 EKRRLQSV 262 (907)
Q Consensus 255 ~~~~~~~~ 262 (907)
.+++.+..
T Consensus 230 ~tG~~~W~ 237 (238)
T PF13360_consen 230 KTGKVVWQ 237 (238)
T ss_dssp TTTEEEEE
T ss_pred CCCCEEeE
Confidence 99987643
No 311
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.68 E-value=9.3e-05 Score=75.14 Aligned_cols=293 Identities=12% Similarity=0.103 Sum_probs=169.4
Q ss_pred CcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe----------cCCeEEEEEccCCceEEEEeecCCCC----
Q 002564 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC----------SDGKIHVHNVRYDEELVTFTHSMRGA---- 226 (907)
Q Consensus 161 g~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~----------~dg~I~iwd~~~~~~~~~~~~~~~~~---- 226 (907)
++++++|..+++.+-.+.. +-.-.+..+|+++.+++++ ..-.|.+||..+-.....+..+.+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999998877764 3334477899999888753 23469999999998888777653211
Q ss_pred --EEEEEEecCCCCEEEEEe--CCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCC
Q 002564 227 --VTALAFSSDGQPLLASGA--SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 302 (907)
Q Consensus 227 --v~~l~fs~dg~~~l~sg~--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~ 302 (907)
...++++.||+ ++.+.. -...|.|-|+..++.+..+. -.+ +..+--++ .+.+.+.|.||++....++....
T Consensus 95 ~~~~~~~ls~dgk-~~~V~N~TPa~SVtVVDl~~~kvv~ei~--~PG-C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 95 PYKNMFALSADGK-FLYVQNFTPATSVTVVDLAAKKVVGEID--TPG-CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGK 169 (342)
T ss_dssp --GGGEEE-TTSS-EEEEEEESSSEEEEEEETTTTEEEEEEE--GTS-EEEEEEEE-TTEEEEEETTSCEEEEEETSTSS
T ss_pred ccccceEEccCCc-EEEEEccCCCCeEEEEECCCCceeeeec--CCC-EEEEEecC-CCceEEEecCCceEEEEECCCCC
Confidence 23467888998 554443 45689999999999988886 222 22222222 24577888899999998886543
Q ss_pred Cccee-EeccCCCCCC-eEEEEecCCCEEEEEeCCCCEEEEEceecccceeechh--hhhHHHhhccchhhhcccCceeE
Q 002564 303 DPRLL-RFRSGHSAPP-LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQR--HVAKRARKLKMKEEELKLKPVIA 378 (907)
Q Consensus 303 ~~~~~-~~~~~h~~~v-~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~ 378 (907)
..+.. ..+..-..++ ..-.+...+..++-.+.+|.|+-.++........-+-. ....+..
T Consensus 170 ~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~---------------- 233 (342)
T PF06433_consen 170 EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKAD---------------- 233 (342)
T ss_dssp EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHT----------------
T ss_pred EeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcccccc----------------
Confidence 22111 1222222233 23345555556666788898888877654322111000 0000000
Q ss_pred eeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 002564 379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGIS 458 (907)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~ 458 (907)
..|... -.+++.|...+.+++.- .....+ .|+.+ .-.|.+||+.+++.
T Consensus 234 ----~WrPGG-~Q~~A~~~~~~rlyvLM-h~g~~g--------sHKdp------------------gteVWv~D~~t~kr 281 (342)
T PF06433_consen 234 ----GWRPGG-WQLIAYHAASGRLYVLM-HQGGEG--------SHKDP------------------GTEVWVYDLKTHKR 281 (342)
T ss_dssp ----TEEE-S-SS-EEEETTTTEEEEEE-EE--TT---------TTS-------------------EEEEEEEETTTTEE
T ss_pred ----CcCCcc-eeeeeeccccCeEEEEe-cCCCCC--------CccCC------------------ceEEEEEECCCCeE
Confidence 111111 22344444444444421 111110 01111 11588899999999
Q ss_pred ceeeeccccccccCcCCcEEEEEEcCCCC-EEEEE-ecCCeEEEEECCCCceeeeeecCcc
Q 002564 459 RGSYLDMSERSNYAHNGEVVGVACDSTNT-LMISA-GYHGDIKVWDFKGRDLKSRWEVGCS 517 (907)
Q Consensus 459 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~ 517 (907)
+..+. -..++.+|+++.+.+ +|++. ..++.+.+||..+++.++.++.-+.
T Consensus 282 v~Ri~---------l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~ 333 (342)
T PF06433_consen 282 VARIP---------LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGE 333 (342)
T ss_dssp EEEEE---------EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SS
T ss_pred EEEEe---------CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCC
Confidence 88875 234577999998775 56554 4679999999999999988865443
No 312
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.68 E-value=5.7e-05 Score=77.04 Aligned_cols=192 Identities=15% Similarity=0.101 Sum_probs=123.9
Q ss_pred EEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEc-CCCCEEEEEecCCeEEEEEccCCceEEEEee
Q 002564 143 CIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSS-PALDVVAVGCSDGKIHVHNVRYDEELVTFTH 221 (907)
Q Consensus 143 ~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~s-p~~~~la~g~~dg~I~iwd~~~~~~~~~~~~ 221 (907)
.+|.+... ..+++-...+.|..|+..+++... +.... ...+++. ++ ..++++...+ +.++|..+++.......
T Consensus 5 p~~d~~~g-~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 5 PVWDPRDG-RLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEETTTT-EEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred eEEECCCC-EEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 45666331 445555568899999988876644 32212 6777777 56 4555566544 56669988865444443
Q ss_pred --c--CCCCEEEEEEecCCCCEEEEEeCC--------CcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEE-EEcC
Q 002564 222 --S--MRGAVTALAFSSDGQPLLASGASS--------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLM-SASA 288 (907)
Q Consensus 222 --~--~~~~v~~l~fs~dg~~~l~sg~~d--------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~ 288 (907)
. .......+++.++|. +.++.... |.|..++.. ++...... .-...+.++|+|+++.|+ +-+.
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETTSSEEEEEETT
T ss_pred cCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECCcchheeecccc
Confidence 1 245788999999999 66665533 568888877 55444443 456678999999998765 5566
Q ss_pred CCcEEEEEccCCCCCc---ceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEce
Q 002564 289 DNSIKMWIFDTTDGDP---RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (907)
Q Consensus 289 d~~i~vw~~~~~~~~~---~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~ 344 (907)
.+.|..++++...... +.........+.+-.+++..+|+..++....+.|.+++..
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 7778888876554311 2222222333347889999999888877788888888865
No 313
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.68 E-value=0.0016 Score=73.58 Aligned_cols=524 Identities=13% Similarity=0.104 Sum_probs=261.4
Q ss_pred CCeEEEEEEe---CCeEEEEEcCcceEEEecCCC--CcceEEEE--Ee---cCeEEEEEcCeEEEEeCCeeEEE--Eccc
Q 002564 25 GTENFVTVSV---GKAFHIYNCAKLNLVLVGPQL--PKKIRALA--SY---RDYTFAAYGNHIAVVKRAHQVAT--WSRH 92 (907)
Q Consensus 25 ~~~~~~~~~~---~~~v~iwd~~~~~~~~~~~~~--~~~I~~la--~~---~~~~~~a~g~~I~vw~~~~~~~~--~~~h 92 (907)
++..+++++. |++++|....=+=........ ...+-.+. ++ +++.++..-+.-++...+.++.. ..+-
T Consensus 368 ~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~~eTrvl~i~~e~ee~~~~gf 447 (1096)
T KOG1897|consen 368 GQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYDNYLVLSFISETRVLNISEEVEETEDPGF 447 (1096)
T ss_pred CCceEEEEeCCCCCCcEEEEecccccceeeEeecCCccceeEeeccccccCCcEEEEEeccceEEEEEccceEEeccccc
Confidence 4456666654 788998865432111111122 33343443 22 23566666666555554444333 2333
Q ss_pred ccceEEEE---eeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecC
Q 002564 93 SAKVNLLL---LFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS 169 (907)
Q Consensus 93 ~~~V~~l~---~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~ 169 (907)
......+. ..|+.|+=.. ...|++.+-+. . ...+..+.+.....+. -+. ..+++++.++.+...++.
T Consensus 448 ~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~~--~----~~~W~~p~~~ti~~~~-~n~--sqVvvA~~~~~l~y~~i~ 517 (1096)
T KOG1897|consen 448 STDEQTIFCSTINGNQLVQVT-SNSIRLVSSAG--L----RSEWRPPGKITIGVVS-ANA--SQVVVAGGGLALFYLEIE 517 (1096)
T ss_pred cccCceEEEEccCCceEEEEe-cccEEEEcchh--h----hhcccCCCceEEEEEe-ecc--eEEEEecCccEEEEEEee
Confidence 33333333 4677766665 55678877551 1 2233333333333332 222 357777777777777776
Q ss_pred CCeEEEEE-cCCCCCEEEEEEcCCC------CEEEEEecCCeEEEEEcc-CCceEEEEeecC---CCCEEEEEEecCCCC
Q 002564 170 TKKKLYEF-KGWGSSISSCVSSPAL------DVVAVGCSDGKIHVHNVR-YDEELVTFTHSM---RGAVTALAFSSDGQP 238 (907)
Q Consensus 170 ~~~~~~~~-~~h~~~I~~l~~sp~~------~~la~g~~dg~I~iwd~~-~~~~~~~~~~~~---~~~v~~l~fs~dg~~ 238 (907)
.+.....- +.....|.|+.++|-| +++|+|..+..+.+.-.. ....+....... ...|...+|-.|..
T Consensus 518 ~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~- 596 (1096)
T KOG1897|consen 518 DGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIH- 596 (1096)
T ss_pred ccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccce-
Confidence 66522211 2336789999999853 289999887666554433 333333332221 23455666666666
Q ss_pred EEEEEeCCCcEEEEEC--CCceeeeeee-cccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCC
Q 002564 239 LLASGASSGVISIWNL--EKRRLQSVIR-EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSA 315 (907)
Q Consensus 239 ~l~sg~~dg~I~iwd~--~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~ 315 (907)
+|.++..||.+.-|.+ .++..-..-+ .--..++.=-.|+..++.-+.+..|+-..+|..+. ++..+.-. -.
T Consensus 597 yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-----kLv~spls-~k 670 (1096)
T KOG1897|consen 597 YLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-----KLVYSPLS-LK 670 (1096)
T ss_pred EEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-----cEEEeccc-hH
Confidence 8888889999876654 4444332221 01234555555655554333344455555553321 11111000 01
Q ss_pred CCeE-EEEec--CCCEEEEEeCCCCEEEEEceeccc--ceeechhhhhHHHhhccchhhhcccCc-eeEeeecccccccc
Q 002564 316 PPLC-IRFYA--NGRHILSAGQDRAFRLFSVIQDQQ--SRELSQRHVAKRARKLKMKEEELKLKP-VIAFDCAEIRERDW 389 (907)
Q Consensus 316 ~v~~-i~~~~--~g~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~ 389 (907)
.+.. +.|+. -+..++++.. +.+++.-+..-+. .++++.+...++ +...+ -..+.....|....
T Consensus 671 ev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtvpl~~~prr----------I~~q~~sl~~~v~s~r~e~~ 739 (1096)
T KOG1897|consen 671 EVNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTVPLGESPRR----------ICYQESSLTFGVLSNRIESS 739 (1096)
T ss_pred HhhhhcccccccCCceEEEecC-CceEEEEecchhhcceeeecCCCChhh----------eEecccceEEEEEecccccc
Confidence 1111 11221 1223444443 3455554432221 122221111111 11111 01111111111111
Q ss_pred cceEEEeeCCceEEEEEeeeceecce-eeecCCCCCCceEEEEEcCC-CCEEEEEeC----------CCcEEEEeCCCCc
Q 002564 390 CNVVTCHMDTAQAYVWRLQNFVLGEH-ILRPCPENPTAVKACTISAC-GNFAVLGTA----------GGWIERFNLQSGI 457 (907)
Q Consensus 390 ~~~~~~~~~~~~v~~w~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~----------dg~i~i~d~~~~~ 457 (907)
.....-...-..++++|..+...-.. .+.. ...-..+.++.+..| +.++++|+. .|.|.+|....+.
T Consensus 740 ~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~-~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~ 818 (1096)
T KOG1897|consen 740 AEYYGEEYEVSFLRVLDQNTFEVLSSHEFER-NETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN 818 (1096)
T ss_pred hhhcCCcceEEEEEEecCCceeEEeeccccc-cceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC
Confidence 11000111123455555554433111 1110 011133455567777 788899873 5889999888744
Q ss_pred cceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceee-eeecCcceeEEEEeeCCCEEEEEeCC
Q 002564 458 SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS-RWEVGCSLVKIVYHRVNGLLATVADD 536 (907)
Q Consensus 458 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~i~~~~~s~~~~~la~~~~d 536 (907)
.+..... ..-.+.+.++..- +|+++|. -...|++|++.+.+.++ .-....++..+...-.|..+++|.--
T Consensus 819 ~L~~v~e------~~v~Gav~aL~~f-ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm 889 (1096)
T KOG1897|consen 819 SLELVAE------TVVKGAVYALVEF-NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLM 889 (1096)
T ss_pred ceeeeee------eeeccceeehhhh-CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeecc
Confidence 4433320 1223444444432 4566654 44689999998884443 34555889999999999999999887
Q ss_pred CeEEEEEccc--ceeEEEee-cCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcC
Q 002564 537 LVIRLFDVVA--LRMVRKFE-GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 587 (907)
Q Consensus 537 g~I~v~d~~~--~~~~~~~~-~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~ 587 (907)
+++.+.-... |.....-+ -+....+++.+-.+..++. +..+|.+.+-..+
T Consensus 890 ~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylg-ae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 890 RSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLG-AENSGNLFTVRKD 942 (1096)
T ss_pred ceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEe-ecccccEEEEEec
Confidence 7777655443 32332222 3567788888776655554 5567777776544
No 314
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.64 E-value=4.5e-06 Score=91.31 Aligned_cols=134 Identities=19% Similarity=0.250 Sum_probs=97.2
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCC----C-ccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe-cCCeEEEEECCC
Q 002564 432 ISACGNFAVLGTAGGWIERFNLQS----G-ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKG 505 (907)
Q Consensus 432 ~s~~g~~l~~g~~dg~i~i~d~~~----~-~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~ 505 (907)
+.++|++..+ .++.|.++|..+ + .....+ .-.....++.++|||+++++++ .+.++.|.|+.+
T Consensus 284 ~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yI---------PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 284 AVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYV---------PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred hhhCCCEEEE--CCCEEEEEECCccccCCcceEEEE---------ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 4557887776 367899999887 3 333333 3455677899999999887766 689999999987
Q ss_pred Cc------------eeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEccc----------ceeEEEeecCCCCee--
Q 002564 506 RD------------LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA----------LRMVRKFEGHTDRIT-- 561 (907)
Q Consensus 506 ~~------------~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~----------~~~~~~~~~h~~~I~-- 561 (907)
.+ ...+.+........+|.++|+...+-.-|..|..||+.+ ...+.++.-|-.+..
T Consensus 353 ~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~ 432 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNH 432 (635)
T ss_pred hhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceee
Confidence 55 345555556667889999998888888899999999987 345665654543322
Q ss_pred ---eEEECCCCcEEEEEe
Q 002564 562 ---DFCFSEDGKWLLSSG 576 (907)
Q Consensus 562 ---~l~fspdg~~l~s~s 576 (907)
.=.-.|||+||++..
T Consensus 433 ~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 433 ASMGETKEADGKWLVSLN 450 (635)
T ss_pred ecCCCcCCCCCCEEEEcc
Confidence 223478999999874
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=1.1e-06 Score=95.92 Aligned_cols=180 Identities=14% Similarity=0.162 Sum_probs=137.4
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (907)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 504 (907)
..++|++++ +.+++.|+.+|.|++++.+... ...+ .|... +-+|.+++||+.||+|.|-.+-
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~---------~~s~~------~~~Gey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNF---------DHSSS------ILEGEYVASCSDDGKVVIGSLF 101 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc-cccc---------ccccc------ccCCceEEEecCCCcEEEeecc
Confidence 345555554 6899999999999999987654 2222 34333 6689999999999999999999
Q ss_pred CCceeeeeecCcceeEEEEeeC-----CCEEEEEeCCCeEEEEEccc--ceeEEEeecCCCCeeeEEECCCCcEEEEEeC
Q 002564 505 GRDLKSRWEVGCSLVKIVYHRV-----NGLLATVADDLVIRLFDVVA--LRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577 (907)
Q Consensus 505 ~~~~~~~~~~~~~i~~~~~s~~-----~~~la~~~~dg~I~v~d~~~--~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~ 577 (907)
+.+....+..+.++.+++++|+ .+.+++|+.-| +.++.-.= .+.-..+..-.++|.++.| .|.++|-++.
T Consensus 102 ~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand 178 (846)
T KOG2066|consen 102 TDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAND 178 (846)
T ss_pred CCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecC
Confidence 9999999999999999999998 56888898888 76664321 1111145556789999999 5779999988
Q ss_pred CCcEEEEEcCCCceeeEeeeCCc-------eEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564 578 DGSLRIWDVILARQIDAIHVDVS-------ITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (907)
Q Consensus 578 Dg~I~vwd~~~~~~~~~~~~~~~-------v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (907)
+| |+|||+.+++.+..+..+.. ...+.|.++. .|+.|=.| +|.|..++
T Consensus 179 ~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d--~v~i~~I~ 233 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD--SVKICSIK 233 (846)
T ss_pred CC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC--eEEEEEEe
Confidence 88 99999999998877765432 5678888764 45555555 48888887
No 316
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=1.2e-07 Score=92.68 Aligned_cols=154 Identities=19% Similarity=0.279 Sum_probs=122.6
Q ss_pred CCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCC-----ceeeeeecCcce
Q 002564 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR-----DLKSRWEVGCSL 518 (907)
Q Consensus 444 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~i 518 (907)
.+-.|-+-|+.+|.... | ...+.|.++.|...+.++..|...|.|...|+..+ .+...+-+++.|
T Consensus 232 ~sqqv~L~nvetg~~qs-f---------~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssv 301 (425)
T KOG2695|consen 232 LSQQVLLTNVETGHQQS-F---------QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSV 301 (425)
T ss_pred ccceeEEEEeecccccc-c---------ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcch
Confidence 34456677777664322 2 35677888999988899999999999999999854 567778888999
Q ss_pred eEEEEee-CCCEEEEEeCCCeEEEEEccccee---EEEeecCCCCeeeE--EECCCCcEEEEEeCCCcEEEEEcCCCcee
Q 002564 519 VKIVYHR-VNGLLATVADDLVIRLFDVVALRM---VRKFEGHTDRITDF--CFSEDGKWLLSSGMDGSLRIWDVILARQI 592 (907)
Q Consensus 519 ~~~~~s~-~~~~la~~~~dg~I~v~d~~~~~~---~~~~~~h~~~I~~l--~fspdg~~l~s~s~Dg~I~vwd~~~~~~~ 592 (907)
+++..-. ++++|.+.+.+|.|.+||.+--++ +.++.||.+.-.-+ -..+....+++++.|...|||.+.+|.++
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL 381 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence 9988777 788999999999999999987777 99999997654443 34566778999999999999999999999
Q ss_pred eEeeeCCc-----eEEEEEC
Q 002564 593 DAIHVDVS-----ITALSLS 607 (907)
Q Consensus 593 ~~~~~~~~-----v~~l~~s 607 (907)
.++..+.. +.+++|.
T Consensus 382 ~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 382 CTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred eccCCCCccccccccceehh
Confidence 99887554 4555553
No 317
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.62 E-value=1.6e-05 Score=80.62 Aligned_cols=271 Identities=13% Similarity=0.184 Sum_probs=153.6
Q ss_pred CcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEc----------CCCcEEEEEccCCCCCcceeEeccC----
Q 002564 247 GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS----------ADNSIKMWIFDTTDGDPRLLRFRSG---- 312 (907)
Q Consensus 247 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~----------~d~~i~vw~~~~~~~~~~~~~~~~~---- 312 (907)
+.+.++|..+++.+..+..+.. -.+..+|+++.+++++ ..-.|.+||..+-.....+.. ..+
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~---~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~i-P~k~R~~ 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL---GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEI-PPKPRAQ 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS---EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEE-TTS-B--
T ss_pred ceEEEEECCCCcEEEEeecccC---CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEec-CCcchhe
Confidence 4799999999999999884443 3466799999888754 234688998766532221111 111
Q ss_pred CCCCCeEEEEecCCCEEEEE--eCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeeccccccccc
Q 002564 313 HSAPPLCIRFYANGRHILSA--GQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC 390 (907)
Q Consensus 313 h~~~v~~i~~~~~g~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 390 (907)
........+++.||++++.. +--.+|.+.|+...+...++..+
T Consensus 93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P----------------------------------- 137 (342)
T PF06433_consen 93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP----------------------------------- 137 (342)
T ss_dssp BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-----------------------------------
T ss_pred ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-----------------------------------
Confidence 11233456677777777654 33445666776665555444321
Q ss_pred ceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEeCC-CCccceeeeccccc
Q 002564 391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFNLQ-SGISRGSYLDMSER 468 (907)
Q Consensus 391 ~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~i~d~~-~~~~~~~~~~~~~~ 468 (907)
+ |..+-|. .+-+..-|.||.+..+.+. .|+...... .
T Consensus 138 ----------------------------------G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t----~ 176 (342)
T PF06433_consen 138 ----------------------------------G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST----K 176 (342)
T ss_dssp ----------------------------------S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE----E
T ss_pred ----------------------------------C---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeec----c
Confidence 0 1111111 1234455566666666665 333321111 0
Q ss_pred cccCcCCc-EEEEEEcCCCCEEEEEecCCeEEEEECCCCceee--eeec-----------CcceeEEEEeeCCCEEEEEe
Q 002564 469 SNYAHNGE-VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RWEV-----------GCSLVKIVYHRVNGLLATVA 534 (907)
Q Consensus 469 ~~~~h~~~-v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~-----------~~~i~~~~~s~~~~~la~~~ 534 (907)
.+..-..+ ...-+++..+..++-.+.+|.|+--|+....... .+.. ++.-.-+++++..+.|.+..
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 01111122 2233344445555557778888888877654321 2211 14455688888776666543
Q ss_pred CC----------CeEEEEEcccceeEEEeecCCCCeeeEEECCCCc-EEEEE-eCCCcEEEEEcCCCceeeEeeeC
Q 002564 535 DD----------LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGK-WLLSS-GMDGSLRIWDVILARQIDAIHVD 598 (907)
Q Consensus 535 ~d----------g~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~-~l~s~-s~Dg~I~vwd~~~~~~~~~~~~~ 598 (907)
.. ..|.++|+.+++.++++.. ..++.+|+.+.|.+ +|++. ..++.+.+||..+|+++..+..-
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 21 1688999999999999873 24688999999876 56544 46899999999999999988753
No 318
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=1.1e-06 Score=95.51 Aligned_cols=111 Identities=21% Similarity=0.325 Sum_probs=90.0
Q ss_pred EEEEEcCCCCEEEEEec----CCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceee
Q 002564 185 SSCVSSPALDVVAVGCS----DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ 260 (907)
Q Consensus 185 ~~l~~sp~~~~la~g~~----dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~ 260 (907)
+-..|+|...++|+++- .|.|.||- ++|++-.....+ -.+++++|+|..- +|+.|-.-|.+.+|...+.+..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P--~hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP--VHATSLCWHPEEF-VLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc--eehhhhccChHHH-HHhhccccceeEEEecCCceee
Confidence 44578999999988863 48898885 567755444332 4578899999876 8999999999999998777665
Q ss_pred eeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 002564 261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (907)
Q Consensus 261 ~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~ 300 (907)
.... .|..+|..+.|+++|..++++..-|.+.+|.++..
T Consensus 95 tv~~-th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 95 TVVE-THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred eecc-CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence 5555 89999999999999999999999999999998754
No 319
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.59 E-value=1.4e-07 Score=64.29 Aligned_cols=39 Identities=41% Similarity=0.868 Sum_probs=37.2
Q ss_pred ceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEE
Q 002564 547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (907)
Q Consensus 547 ~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd 585 (907)
+++++++.+|.+.|++++|+|++++|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999997
No 320
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.59 E-value=2.1e-05 Score=78.78 Aligned_cols=197 Identities=12% Similarity=0.148 Sum_probs=143.7
Q ss_pred CceEEEEEcC-CCCEEEEEeCCC-cEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe-----cCCe
Q 002564 425 TAVKACTISA-CGNFAVLGTAGG-WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-----YHGD 497 (907)
Q Consensus 425 ~~v~~~~~s~-~g~~l~~g~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-----~dg~ 497 (907)
.....++.+| .+..++++-.-| ...+||..++.....+.....+.+.+| -+|++||++|++.- ..|.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~ 78 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGV 78 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEE
Confidence 4556778888 566777777777 567899999999888876555555666 47999999999874 4588
Q ss_pred EEEEECC-CCceeeeeecC-cceeEEEEeeCCCEEEEEeC------------------CCeEEEEEcccceeEEE--e--
Q 002564 498 IKVWDFK-GRDLKSRWEVG-CSLVKIVYHRVNGLLATVAD------------------DLVIRLFDVVALRMVRK--F-- 553 (907)
Q Consensus 498 i~iwd~~-~~~~~~~~~~~-~~i~~~~~s~~~~~la~~~~------------------dg~I~v~d~~~~~~~~~--~-- 553 (907)
|-|||.. +-+.+.++..+ -....+.+.|||+.|+++.. +-++...|..+|+++.+ +
T Consensus 79 IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~ 158 (305)
T PF07433_consen 79 IGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP 158 (305)
T ss_pred EEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc
Confidence 9999999 55666666554 45677889999988887632 33566778888988777 4
Q ss_pred ecCCCCeeeEEECCCCcEEEEEeCCC-------cEEEEEcCCCceeeEeee--------CCceEEEEECCCCceEEEEEe
Q 002564 554 EGHTDRITDFCFSEDGKWLLSSGMDG-------SLRIWDVILARQIDAIHV--------DVSITALSLSPNMDVLATAHV 618 (907)
Q Consensus 554 ~~h~~~I~~l~fspdg~~l~s~s~Dg-------~I~vwd~~~~~~~~~~~~--------~~~v~~l~~spdg~~lat~~~ 618 (907)
.-|...|..+++.++|..++..-..| -|-+++. ++.+..+.. ..-+-+++++++|.++++++-
T Consensus 159 ~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP 236 (305)
T PF07433_consen 159 DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP 236 (305)
T ss_pred cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence 33778899999999997666554333 2334432 333333332 344899999999999999888
Q ss_pred cCCeEEEeecc
Q 002564 619 DQNGVYLWVNR 629 (907)
Q Consensus 619 d~~~i~lW~~~ 629 (907)
-++.+.+||..
T Consensus 237 rGg~~~~~d~~ 247 (305)
T PF07433_consen 237 RGGRVAVWDAA 247 (305)
T ss_pred CCCEEEEEECC
Confidence 88789999753
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=4e-06 Score=84.10 Aligned_cols=165 Identities=11% Similarity=0.134 Sum_probs=116.4
Q ss_pred EEEEecCCCeEEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEE
Q 002564 163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA 241 (907)
Q Consensus 163 i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~-~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~ 241 (907)
+++.+..+.+....+.+|...|..++|||..+ ++..++.+..|.|.|+++...+..+..+ ..+.+++|.-|..+++.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCcceeE
Confidence 66666666666677788899999999999877 7888999999999999999999988876 78999999999988999
Q ss_pred EEeCCCcEEEEECCCceee-eeee-cccccCeEEEEEec------CCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCC
Q 002564 242 SGASSGVISIWNLEKRRLQ-SVIR-EAHDNAIISLHFFA------NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH 313 (907)
Q Consensus 242 sg~~dg~I~iwd~~~~~~~-~~~~-~~h~~~V~~l~~~~------~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h 313 (907)
.|..+|.|.|||++..+-. ..+. .-...+|..++..+ .+.+|+.+.. .+..|.+....+.+.++... +.
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlel-e~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLEL-EP 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCccccc-CC
Confidence 9999999999999865322 1221 01234555554433 3445555543 35677765554443333222 34
Q ss_pred CCCCeEEEEecCCCEEEEE
Q 002564 314 SAPPLCIRFYANGRHILSA 332 (907)
Q Consensus 314 ~~~v~~i~~~~~g~~l~s~ 332 (907)
.+...++++++-.++++..
T Consensus 330 pG~cismqy~~~snh~l~t 348 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLT 348 (463)
T ss_pred CcceeeeeecCccceEEEE
Confidence 5666777777754555443
No 322
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=5.2e-06 Score=90.59 Aligned_cols=114 Identities=16% Similarity=0.161 Sum_probs=86.9
Q ss_pred CCEEEEEEecCCCCEEEEEe----CCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 002564 225 GAVTALAFSSDGQPLLASGA----SSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (907)
Q Consensus 225 ~~v~~l~fs~dg~~~l~sg~----~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~ 300 (907)
+.-+-.+|+|..+ ++++++ ..|.|.||- ++|++..... ..-.+++++|+|..-.|+.|-.-|.+.+|.-...
T Consensus 16 avsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 16 AVSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred ccccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCc
Confidence 3445567888877 777776 458898885 5666544433 2334567999999988899888899999965443
Q ss_pred CCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceec
Q 002564 301 DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD 346 (907)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~ 346 (907)
..-.....|..++..+.|+++|..++++..-|.+.+|....-
T Consensus 92 ----e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 92 ----ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred ----eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence 233444579999999999999999999999999999987643
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.49 E-value=0.0017 Score=75.20 Aligned_cols=275 Identities=12% Similarity=0.108 Sum_probs=166.1
Q ss_pred CCCcceEEEEEecCeEEEEEcCe-----EEEEe---CCe---eEEEEc--ccccceEEEEe--eCCEEEEEecCCcEEEE
Q 002564 54 QLPKKIRALASYRDYTFAAYGNH-----IAVVK---RAH---QVATWS--RHSAKVNLLLL--FGEHILSIDIDGNMFIW 118 (907)
Q Consensus 54 ~~~~~I~~la~~~~~~~~a~g~~-----I~vw~---~~~---~~~~~~--~h~~~V~~l~~--~g~~l~s~~~dg~v~vW 118 (907)
.+++.-.+...+|...+++++.. +..+. .++ ....+. .-.+.|.++.+ ++..++.+..+|.|.+-
T Consensus 16 ~~~~~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iilv 95 (1265)
T KOG1920|consen 16 AGPGNAQAFILSPELVTVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLADTNSICVITALGDIILV 95 (1265)
T ss_pred CCCCchhheeeccccceeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEecccceEEEEecCCcEEEE
Confidence 34444466677788888888733 22232 122 111121 22357888886 68889999999999988
Q ss_pred ecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEec----CC-------------------CeEEE
Q 002564 119 AFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNI----ST-------------------KKKLY 175 (907)
Q Consensus 119 d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~----~~-------------------~~~~~ 175 (907)
|.++... .....-...+..+.|+|+. ..++..+..+++.+-.- -. |+.-.
T Consensus 96 d~et~~~-----eivg~vd~GI~aaswS~De--e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeT 168 (1265)
T KOG1920|consen 96 DPETLEL-----EIVGNVDNGISAASWSPDE--ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKET 168 (1265)
T ss_pred cccccce-----eeeeeccCceEEEeecCCC--cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccce
Confidence 8777654 1222234556777899999 78988888887776532 11 11111
Q ss_pred EEcCC---------------------CCCEEEEEEcCCCCEEEEE-----ecCCeEEEEEccCCceEEEEeecCCCCEEE
Q 002564 176 EFKGW---------------------GSSISSCVSSPALDVVAVG-----CSDGKIHVHNVRYDEELVTFTHSMRGAVTA 229 (907)
Q Consensus 176 ~~~~h---------------------~~~I~~l~~sp~~~~la~g-----~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~ 229 (907)
.|.|. .+.=+++.|--||+++|+. .....|++||-+ |. +........+.-.+
T Consensus 169 qfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~-Lns~se~~~~l~~~ 246 (1265)
T KOG1920|consen 169 QFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA-LNSTSEPVEGLQHS 246 (1265)
T ss_pred eeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch-hhcccCcccccccc
Confidence 22211 1122458899999999983 233789999976 33 33333333455679
Q ss_pred EEEecCCCCEEEEEe---CCCcEEEEECCCc---eeeeeeecccccCeEEEEEecCCCEEEE---EcCCCcEEEEEccCC
Q 002564 230 LAFSSDGQPLLASGA---SSGVISIWNLEKR---RLQSVIREAHDNAIISLHFFANEPVLMS---ASADNSIKMWIFDTT 300 (907)
Q Consensus 230 l~fs~dg~~~l~sg~---~dg~I~iwd~~~~---~~~~~~~~~h~~~V~~l~~~~~~~~l~s---~~~d~~i~vw~~~~~ 300 (907)
++|-|.|. ++++-. +++.|.+|.-+.- ...-... .....|..++|+.++..|++ ......|++|-+ +
T Consensus 247 LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p-~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~--~ 322 (1265)
T KOG1920|consen 247 LSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP-LDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT--G 322 (1265)
T ss_pred eeecCCCC-eEeeeeecCCCCcEEEEecCCccccccccCCc-ccccchheeeecCCCCceeeeecccccceEEEEEe--c
Confidence 99999998 666543 5668999984322 2222222 23345999999999998887 444455999954 3
Q ss_pred CCCcceeEeccCCCCCCeEEEEec-CCCEEEEEeCCCCEEEEEc
Q 002564 301 DGDPRLLRFRSGHSAPPLCIRFYA-NGRHILSAGQDRAFRLFSV 343 (907)
Q Consensus 301 ~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~s~~~dg~i~iwd~ 343 (907)
+..+-+...+.-..... +.|+| ....+..-..+|...++++
T Consensus 323 NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 323 NYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred CeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 33333333333222222 78888 3334444446777666654
No 324
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=1.4e-07 Score=102.78 Aligned_cols=171 Identities=18% Similarity=0.168 Sum_probs=120.7
Q ss_pred CeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCC-cE
Q 002564 171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSG-VI 249 (907)
Q Consensus 171 ~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg-~I 249 (907)
.+...+|..|....+|++|+-+.+.|++|+..|.|+++++.+|........| ...|+-+.=+.||...|.+++... ..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH-~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH-QSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccc-ccccccccccCCcceeeeeccccCchH
Confidence 3455677888999999999999999999999999999999999998888876 889999999999995555444443 67
Q ss_pred EEEECCC-ceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCE
Q 002564 250 SIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH 328 (907)
Q Consensus 250 ~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~ 328 (907)
.+|++.+ +...+++. .-.++.|+.....-+.|+......+||+.+...-...+.-..+....-++..|+|+..+
T Consensus 1170 aLW~~~s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCcccccc-----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 8999864 33344443 34678888765444444444568899988765322222222222333477889998877
Q ss_pred EEEEeCCCCEEEEEceecccceee
Q 002564 329 ILSAGQDRAFRLFSVIQDQQSREL 352 (907)
Q Consensus 329 l~s~~~dg~i~iwd~~~~~~~~~~ 352 (907)
++- || .+||++..+.+..+
T Consensus 1245 Iln---dG--vLWDvR~~~aIh~F 1263 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRF 1263 (1516)
T ss_pred Eee---Cc--eeeeeccHHHHhhh
Confidence 764 44 57998766544443
No 325
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.49 E-value=9.8e-05 Score=74.13 Aligned_cols=221 Identities=14% Similarity=0.182 Sum_probs=144.0
Q ss_pred CcceEEEEEec-CeEEEEEcC----eEEEEeC--CeeEEEEcccccce----EEEEeeCCEEEEEec-----CCcEEEEe
Q 002564 56 PKKIRALASYR-DYTFAAYGN----HIAVVKR--AHQVATWSRHSAKV----NLLLLFGEHILSIDI-----DGNMFIWA 119 (907)
Q Consensus 56 ~~~I~~la~~~-~~~~~a~g~----~I~vw~~--~~~~~~~~~h~~~V----~~l~~~g~~l~s~~~-----dg~v~vWd 119 (907)
+..-..++.+| ....++.+. ...+||. ++....+....+.- -.+.+||++|++.-. .|.|-|||
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 44556777888 455566643 3777773 33333333222222 234468999999754 46799999
Q ss_pred cC-CCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEe------------------cCCcEEEEecCCCeEEEE--E-
Q 002564 120 FK-GIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGS------------------QEGSLQLWNISTKKKLYE--F- 177 (907)
Q Consensus 120 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s------------------~dg~i~iwd~~~~~~~~~--~- 177 (907)
.. +... +.++..+.-..--+.+.|++ ..|+++. .+.++...|..+|+.+.. +
T Consensus 84 ~~~~~~r----i~E~~s~GIGPHel~l~pDG--~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp 157 (305)
T PF07433_consen 84 AARGYRR----IGEFPSHGIGPHELLLMPDG--ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP 157 (305)
T ss_pred CcCCcEE----EeEecCCCcChhhEEEcCCC--CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC
Confidence 98 3333 56666655555566678887 5666652 234566778889988776 4
Q ss_pred -cCCCCCEEEEEEcCCCCEEEEEecCCe-------EEEEEccCCceEEEEeec------CCCCEEEEEEecCCCCEEEEE
Q 002564 178 -KGWGSSISSCVSSPALDVVAVGCSDGK-------IHVHNVRYDEELVTFTHS------MRGAVTALAFSSDGQPLLASG 243 (907)
Q Consensus 178 -~~h~~~I~~l~~sp~~~~la~g~~dg~-------I~iwd~~~~~~~~~~~~~------~~~~v~~l~fs~dg~~~l~sg 243 (907)
.-|.-.|.-+++.++|..++..-..|. |-+++ .++.+..+... ..+.+-++++++++..+.+|+
T Consensus 158 ~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts 235 (305)
T PF07433_consen 158 PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS 235 (305)
T ss_pred ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC
Confidence 347889999999999976665543332 33333 33333333321 246899999999998455666
Q ss_pred eCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcC
Q 002564 244 ASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA 288 (907)
Q Consensus 244 ~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~ 288 (907)
-..|.+.+||..+++++.... -..+..++-.+++ ++++.+.
T Consensus 236 PrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 236 PRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred CCCCEEEEEECCCCCEeeccc---cCceeeeeecCCc-eEEeCCC
Confidence 688999999999999988765 3456778777777 5666554
No 326
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.45 E-value=0.00055 Score=77.06 Aligned_cols=175 Identities=17% Similarity=0.146 Sum_probs=109.7
Q ss_pred EEEcCCCCEEEEEeCCC------------------cEEEEeCCCCccceeeecccccc--ccCcCCcE-EEEEEcCCCC-
Q 002564 430 CTISACGNFAVLGTAGG------------------WIERFNLQSGISRGSYLDMSERS--NYAHNGEV-VGVACDSTNT- 487 (907)
Q Consensus 430 ~~~s~~g~~l~~g~~dg------------------~i~i~d~~~~~~~~~~~~~~~~~--~~~h~~~v-~~l~~s~~~~- 487 (907)
.++.+.+..+++++.++ .|.-+|..+|+.+..+....... ......++ ..+. .-++.
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~ 300 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKP 300 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCe
Confidence 45666677888887665 79999999999998875211100 00111111 1111 11232
Q ss_pred --EEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEE------------------eCCCeEEEEEcccc
Q 002564 488 --LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV------------------ADDLVIRLFDVVAL 547 (907)
Q Consensus 488 --~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~------------------~~dg~I~v~d~~~~ 547 (907)
.++.++.+|.+...|..+|+.+-..... ...++.+| +.+.++ ..+|.+.-+|..++
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG 376 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG 376 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence 5777888999999999999988776542 11223333 333332 23578888999999
Q ss_pred eeEEEeecCC--------CCe--eeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEE--EEECCCCc
Q 002564 548 RMVRKFEGHT--------DRI--TDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITA--LSLSPNMD 611 (907)
Q Consensus 548 ~~~~~~~~h~--------~~I--~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~--l~~spdg~ 611 (907)
+.+.+..... .+. ..+.. .+..|+.++.||.|+.+|..+|+.+..++...++.+ +.+..+|+
T Consensus 377 ~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~ 450 (488)
T cd00216 377 KVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGK 450 (488)
T ss_pred cEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCE
Confidence 8877765321 111 11222 456888889999999999999999998887665332 33344554
No 327
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.44 E-value=7.3e-07 Score=60.69 Aligned_cols=39 Identities=41% Similarity=0.536 Sum_probs=37.3
Q ss_pred CeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564 171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209 (907)
Q Consensus 171 ~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd 209 (907)
+++++++.+|.+.|++++|+|++++|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 478899999999999999999999999999999999997
No 328
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.43 E-value=3.9e-06 Score=92.69 Aligned_cols=183 Identities=14% Similarity=0.172 Sum_probs=139.0
Q ss_pred eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCC
Q 002564 102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWG 181 (907)
Q Consensus 102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~ 181 (907)
++..++.|+-...+...|+.+.+. .+........ ..++-.++ +.+.+|...|+|.+-|.++.+.++++..|+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e----~r~~~v~a~~--v~imR~Nn--r~lf~G~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKE----TRTTNVSASG--VTIMRYNN--RNLFCGDTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred CCcceeecchhhheeeeeccccee----eeeeeccCCc--eEEEEecC--cEEEeecccceEEeecCCcCceeeeeeccc
Confidence 467788888888889999988877 4444444433 22333444 679999999999999999999999999999
Q ss_pred CCEEEEEEcCCCCEEEEEec---------CCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEE
Q 002564 182 SSISSCVSSPALDVVAVGCS---------DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW 252 (907)
Q Consensus 182 ~~I~~l~~sp~~~~la~g~~---------dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iw 252 (907)
+.|..+.. .|+.|++++. |.-|+|||++.-+.+.-+..+ ....-+.|.|.-...+++++..|...+-
T Consensus 218 ~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~--~~P~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 218 GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP--YGPQFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc--cCchhhhhcccccceEEEEecccceeec
Confidence 99987655 5778888875 445899999988877666554 2236778888766678889999999999
Q ss_pred E---CCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEE
Q 002564 253 N---LEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWI 296 (907)
Q Consensus 253 d---~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~ 296 (907)
| +.+...-..........+.++++++++..++.+..+|.|.+|.
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 9 4433222222223455699999999999999999999999996
No 329
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.42 E-value=0.00017 Score=81.13 Aligned_cols=194 Identities=14% Similarity=0.148 Sum_probs=114.0
Q ss_pred CEEEEEecCCcEEEEecCCCeEEEEEcCCCC------CEE--EEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecC
Q 002564 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGS------SIS--SCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM 223 (907)
Q Consensus 152 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~------~I~--~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~ 223 (907)
+.+++++.++.|.-.|..+|+.+..+..... .+. .++.. ++..++.++.+|.|.-+|.++|+.+-++....
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 5688888899999999999999988764332 010 01111 22678888899999999999999998876542
Q ss_pred CC----CEE-EEEEecCCCCEEEEEe---------CCCcEEEEECCCceeeeeeeccccc-------------------C
Q 002564 224 RG----AVT-ALAFSSDGQPLLASGA---------SSGVISIWNLEKRRLQSVIREAHDN-------------------A 270 (907)
Q Consensus 224 ~~----~v~-~l~fs~dg~~~l~sg~---------~dg~I~iwd~~~~~~~~~~~~~h~~-------------------~ 270 (907)
.. .+. +..+. ++ +++.++ .+|.+..+|..+|+.+-........ .
T Consensus 141 ~~~~~~~i~ssP~v~-~~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 141 QVPPGYTMTGAPTIV-KK--LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CcCcceEecCCCEEE-CC--EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 10 011 12222 23 444553 3678999999999988777632111 0
Q ss_pred e-EEEEEecCCCEEEEEcCCC------------------cEEEEEccCCCCCcceeEeccCCCC----CCeEEEEe----
Q 002564 271 I-ISLHFFANEPVLMSASADN------------------SIKMWIFDTTDGDPRLLRFRSGHSA----PPLCIRFY---- 323 (907)
Q Consensus 271 V-~~l~~~~~~~~l~s~~~d~------------------~i~vw~~~~~~~~~~~~~~~~~h~~----~v~~i~~~---- 323 (907)
+ .+.++.+.+..++.++.++ .+.-.|..++...+. .....|.. ........
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~--~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWF--YQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEE--eeCCCCCCcccccCCCCeEEeccc
Confidence 1 1234444556777776665 455555544432221 11111210 00001111
Q ss_pred cCCC---EEEEEeCCCCEEEEEceeccccee
Q 002564 324 ANGR---HILSAGQDRAFRLFSVIQDQQSRE 351 (907)
Q Consensus 324 ~~g~---~l~s~~~dg~i~iwd~~~~~~~~~ 351 (907)
-+|. .++.++.+|.+..+|..+++..-.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 1333 577788889999999888776544
No 330
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.41 E-value=9e-07 Score=86.74 Aligned_cols=123 Identities=15% Similarity=0.226 Sum_probs=98.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----ccceeeeccccccccCcCCcEEEEEEcC-CCCEEEEEecCCeE
Q 002564 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSG-----ISRGSYLDMSERSNYAHNGEVVGVACDS-TNTLMISAGYHGDI 498 (907)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i 498 (907)
+.|-++.|...++.++.|+.+|.|..+|+..+ .....+ -|.+.|+++..-. ++++|++.+.+|+|
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl---------yh~Ssvtslq~Lq~s~q~LmaS~M~gki 323 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL---------YHDSSVTSLQILQFSQQKLMASDMTGKI 323 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE---------EcCcchhhhhhhccccceEeeccCcCce
Confidence 56677777888899999999999999999865 222222 6899999999877 78899999999999
Q ss_pred EEEECCCCce---eeeeecC---cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecC
Q 002564 499 KVWDFKGRDL---KSRWEVG---CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH 556 (907)
Q Consensus 499 ~iwd~~~~~~---~~~~~~~---~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h 556 (907)
++||..--++ +.+++.+ ..-.-+...+....++++++|...+||.+..+.++.+++-.
T Consensus 324 kLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 324 KLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred eEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 9999986665 6777665 22233455677788999999999999999999999887643
No 331
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.40 E-value=3.2e-05 Score=83.64 Aligned_cols=197 Identities=20% Similarity=0.245 Sum_probs=122.7
Q ss_pred cEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEE-EcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCc-----
Q 002564 141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE-FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE----- 214 (907)
Q Consensus 141 ~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~-~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~----- 214 (907)
.-.++.... ++++.|+.-|.+++|+-..++.... ..+-.+.+..+..|++..++|.|+..|.|.++-+..+.
T Consensus 37 ~lTc~dst~--~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 37 KLTCVDATE--EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred EEEEeecCC--ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 334455555 7899999999999999666554332 23345667777889999999999999999999887543
Q ss_pred eEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc----eeeeeeecccccCeEEEEEecCCCEEEEEcCCC
Q 002564 215 ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR----RLQSVIREAHDNAIISLHFFANEPVLMSASADN 290 (907)
Q Consensus 215 ~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~ 290 (907)
.+......|+..|+|++|++|+. -+.+|...|.|..-.+.+. .....+. .-.+.|..+.+.. +.+|++.. -.
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il-~~ds~IVQlD~~q-~~LLVStl-~r 190 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQAFLSKSQEIL-SEDSEIVQLDYLQ-SYLLVSTL-TR 190 (726)
T ss_pred eeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhhhhccccceee-ccCcceEEeeccc-ceehHhhh-hh
Confidence 12223333578999999999999 8999999999999988872 1111122 3456777777763 33333333 22
Q ss_pred cEEEEEccCCCCCcceeEeccCCCCCCeEEEEecC----CCEEEEEeCCCCEEEEEceecc
Q 002564 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN----GRHILSAGQDRAFRLFSVIQDQ 347 (907)
Q Consensus 291 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~----g~~l~s~~~dg~i~iwd~~~~~ 347 (907)
.+ +++.+..+ .+.+.......-.-...+|.|. .+-.+.|++-| .|+|...-..
T Consensus 191 ~~-Lc~tE~et--i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G 247 (726)
T KOG3621|consen 191 CI-LCQTEAET--ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAG 247 (726)
T ss_pred hh-eeecchhH--HHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecce
Confidence 22 33333221 1112111111112345666663 34455666655 6888776443
No 332
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=9.6e-06 Score=81.46 Aligned_cols=93 Identities=14% Similarity=0.103 Sum_probs=71.5
Q ss_pred EEEEECCCceeeeeeecccccCeEEEEEecCCC-EEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCC-
Q 002564 249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG- 326 (907)
Q Consensus 249 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g- 326 (907)
+++.+..+.+....+. .|...|..++|+|... ++..++.++.|++.|+.+.. .......| ..+++++|.-|.
T Consensus 175 v~~l~~~~fkssq~lp-~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~----~vssy~a~-~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILP-GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC----VVSSYIAY-NQIWSCCWDLDER 248 (463)
T ss_pred eEEeccCCcchhhccc-ccchhhhhhccCccccceeeeeccCceEEEEecccce----eeeheecc-CCceeeeeccCCc
Confidence 5666655555555454 8889999999999877 78889999999999998763 34444455 789999998854
Q ss_pred CEEEEEeCCCCEEEEEceecc
Q 002564 327 RHILSAGQDRAFRLFSVIQDQ 347 (907)
Q Consensus 327 ~~l~s~~~dg~i~iwd~~~~~ 347 (907)
++++.|-..|.|.+||++..+
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ceeEEeccCceEEEEEccCCC
Confidence 566677788999999987654
No 333
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.38 E-value=0.00024 Score=76.50 Aligned_cols=304 Identities=10% Similarity=0.050 Sum_probs=153.0
Q ss_pred cCCCCEEEEEe---------cCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceee
Q 002564 190 SPALDVVAVGC---------SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ 260 (907)
Q Consensus 190 sp~~~~la~g~---------~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~ 260 (907)
|||+++++... ..+.+.|||+.+++....... ...+....|+|+|+ .++... ++.|.+++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~-~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGK-YIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSST-EEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--ccccccceeecCCC-eeEEEe-cCceEEEECCCCCeE
Confidence 68888877743 236789999998765443333 46789999999999 565554 678999998877544
Q ss_pred eeeeccc----------------ccCeEEEEEecCCCEEEEEcC-CCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEe
Q 002564 261 SVIREAH----------------DNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323 (907)
Q Consensus 261 ~~~~~~h----------------~~~V~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 323 (907)
.....+- -+.-.++.|+||+++|+.... +..|+.+.+........ ....+..+.+-
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-------~yp~~~~~~YP 149 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-------QYPEVESIRYP 149 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-------SS-EEEEEE--
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-------cCCcccccccC
Confidence 4333220 012245667777776665543 34444443221110000 00012222221
Q ss_pred cCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEE
Q 002564 324 ANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAY 403 (907)
Q Consensus 324 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~ 403 (907)
.-|...... .+.++++.+++... +....
T Consensus 150 k~G~~np~v----~l~v~~~~~~~~~~-~~~~~----------------------------------------------- 177 (353)
T PF00930_consen 150 KAGDPNPRV----SLFVVDLASGKTTE-LDPPN----------------------------------------------- 177 (353)
T ss_dssp BTTS---EE----EEEEEESSSTCCCE-E---H-----------------------------------------------
T ss_pred CCCCcCCce----EEEEEECCCCcEEE-eeecc-----------------------------------------------
Confidence 112111111 14445544333210 00000
Q ss_pred EEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCccceeeeccccccccCcCCcEE
Q 002564 404 VWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-----GWIERFNLQSGISRGSYLDMSERSNYAHNGEVV 478 (907)
Q Consensus 404 ~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~ 478 (907)
........+..+.|+++++.+++...+ ..+.++|..++.......... .+--..-.
T Consensus 178 ---------------~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~----~~Wv~~~~ 238 (353)
T PF00930_consen 178 ---------------SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETS----DGWVDVYD 238 (353)
T ss_dssp ---------------HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEES----SSSSSSSS
T ss_pred ---------------ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecC----Ccceeeec
Confidence 001123567888899998844443322 256677887766654443111 11111222
Q ss_pred EEEEc-CCC-CEEEEEecCCe--EEEEECCCCceeeeeecCcceeE-EEEeeCCCEEEE-EeC----CCeEEEEEcccce
Q 002564 479 GVACD-STN-TLMISAGYHGD--IKVWDFKGRDLKSRWEVGCSLVK-IVYHRVNGLLAT-VAD----DLVIRLFDVVALR 548 (907)
Q Consensus 479 ~l~~s-~~~-~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~i~~-~~~s~~~~~la~-~~~----dg~I~v~d~~~~~ 548 (907)
...+. +++ .++.....||. |.+.+..++.........-.|.. +.++++++.|.. +.. ...+...++.++.
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~ 318 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG 318 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence 44443 555 45555556765 55556666665544445556644 677888776554 433 2356666676334
Q ss_pred eEEEeecCCCCeeeEEECCCCcEEEEE
Q 002564 549 MVRKFEGHTDRITDFCFSEDGKWLLSS 575 (907)
Q Consensus 549 ~~~~~~~h~~~I~~l~fspdg~~l~s~ 575 (907)
.+..+....+.-..+.|||+|++++-.
T Consensus 319 ~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 319 EPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp EEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred CeEeccCCCCCceEEEECCCCCEEEEE
Confidence 455555443333689999999988744
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.00013 Score=80.88 Aligned_cols=196 Identities=13% Similarity=0.223 Sum_probs=133.9
Q ss_pred cEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCC-EEEEEEcCCCCEEEEEecCC-----eEEEEEccCC-
Q 002564 141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS-ISSCVSSPALDVVAVGCSDG-----KIHVHNVRYD- 213 (907)
Q Consensus 141 ~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~-I~~l~~sp~~~~la~g~~dg-----~I~iwd~~~~- 213 (907)
...++++.+ ..++.|+.+|.|.+.| ++.+.++.|+.+... |..+-...+..+|++.+.|+ .++||+++.-
T Consensus 27 ~isc~~s~~--~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISCCSSST--GSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeEEcCCC--ceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 455677777 7899999999998888 456677889888777 55554444446888776663 5899998732
Q ss_pred -----ceE---EEEe--ec-CCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCC---ceeeeeeecccccCeEEEEEecC
Q 002564 214 -----EEL---VTFT--HS-MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK---RRLQSVIREAHDNAIISLHFFAN 279 (907)
Q Consensus 214 -----~~~---~~~~--~~-~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~---~~~~~~~~~~h~~~V~~l~~~~~ 279 (907)
.++ ..+. .+ ...++.+++.+.+-. .+|+|-.+|.|..+.-+- ......+...-..+|+++++..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 223 1111 11 246889999999977 899999999999885321 11122222234579999999999
Q ss_pred CCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEce
Q 002564 280 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (907)
Q Consensus 280 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~ 344 (907)
+..++.+..-..|.+|.+...+ ........|..+..|..+++....+++++.. .+.+|+..
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~---p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd 243 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT---PSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSD 243 (933)
T ss_pred CceeEEEEecceeEEEEecCCC---cceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCC
Confidence 8863333335679999887332 2345567788899999999765556665544 47888754
No 335
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.35 E-value=0.0012 Score=76.29 Aligned_cols=242 Identities=14% Similarity=0.180 Sum_probs=142.2
Q ss_pred CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC
Q 002564 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (907)
Q Consensus 224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 303 (907)
.+.|.++.|..++. -++.+...|.|.+-|.++......- .-.+.|.+++|+||+..++..+.++++.+-..+-.
T Consensus 68 d~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et~~~eivg--~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~--- 141 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTN-SICVITALGDIILVDPETLELEIVG--NVDNGISAASWSPDEELLALITGRQTLLFMTKDFE--- 141 (1265)
T ss_pred CcceEEEEEecccc-eEEEEecCCcEEEEcccccceeeee--eccCceEEEeecCCCcEEEEEeCCcEEEEEecccc---
Confidence 35899999999988 6777888999999988777543332 35688999999999999999888887776532211
Q ss_pred cceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecc
Q 002564 304 PRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAE 383 (907)
Q Consensus 304 ~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 383 (907)
++....-+. .-.+.+ ..+..|..+.=.-+.-..+++... .....
T Consensus 142 --~i~E~~L~~------d~~~~s-k~v~VGwGrkeTqfrgs~gr~~~~--------------~~~~~------------- 185 (1265)
T KOG1920|consen 142 --PIAEKPLDA------DDERKS-KFVNVGWGRKETQFRGSEGRQAAR--------------QKIEK------------- 185 (1265)
T ss_pred --chhcccccc------cccccc-ccceecccccceeeecchhhhccc--------------ccccc-------------
Confidence 111000010 111111 223333222111111000000000 00000
Q ss_pred cccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEE-----eCCCcEEEEeCCCCcc
Q 002564 384 IRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLG-----TAGGWIERFNLQSGIS 458 (907)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-----~~dg~i~i~d~~~~~~ 458 (907)
..... .......-++++|--||.++++. .....|++||-. |..
T Consensus 186 ------------------------------ek~~~-~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L 233 (1265)
T KOG1920|consen 186 ------------------------------EKALE-QIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL 233 (1265)
T ss_pred ------------------------------ccccc-chhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh
Confidence 00000 00112445678999999999883 333689999987 433
Q ss_pred ceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe---cCCeEEEEECCC---CceeeeeecC-cceeEEEEeeCCCEEE
Q 002564 459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG---YHGDIKVWDFKG---RDLKSRWEVG-CSLVKIVYHRVNGLLA 531 (907)
Q Consensus 459 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~---~dg~i~iwd~~~---~~~~~~~~~~-~~i~~~~~s~~~~~la 531 (907)
-..- ....+.-.+++|-|.|..+++-. .|+.|.++.-+. +...-.+... .++..++|+.++..||
T Consensus 234 ns~s--------e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLA 305 (1265)
T KOG1920|consen 234 NSTS--------EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILA 305 (1265)
T ss_pred hccc--------CcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCcee
Confidence 2221 12334456899999999888764 566798987442 2222222233 3489999999999999
Q ss_pred E---EeCCCeEEEEEcccc
Q 002564 532 T---VADDLVIRLFDVVAL 547 (907)
Q Consensus 532 ~---~~~dg~I~v~d~~~~ 547 (907)
+ ......|++|-+.+.
T Consensus 306 v~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 306 VVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeecccccceEEEEEecCe
Confidence 8 455556999988764
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.00014 Score=80.54 Aligned_cols=207 Identities=15% Similarity=0.188 Sum_probs=137.3
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccC-eEEEEEecCCCEEEEEcCCCc-----EEEEEccCCCCC--
Q 002564 232 FSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA-IISLHFFANEPVLMSASADNS-----IKMWIFDTTDGD-- 303 (907)
Q Consensus 232 fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~l~s~~~d~~-----i~vw~~~~~~~~-- 303 (907)
|++.+. .++.|+.+|.|.+.+ ..-+.+..++ ++... |..+....+..+|++.+.|+. +++|+++..++.
T Consensus 31 ~~s~~~-~vvigt~~G~V~~Ln-~s~~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 31 CSSSTG-SVVIGTADGRVVILN-SSFQLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EcCCCc-eEEEeeccccEEEec-ccceeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 456666 899999999998888 3445556666 66666 555655555578888887654 899999876332
Q ss_pred ccee---Eecc----CCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCce
Q 002564 304 PRLL---RFRS----GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPV 376 (907)
Q Consensus 304 ~~~~---~~~~----~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 376 (907)
+.++ +... ....++.+++.+.+-+.+++|-.+|.|..+.-. ..+....
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD---i~RDrgs---------------------- 162 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD---ILRDRGS---------------------- 162 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc---chhcccc----------------------
Confidence 4444 2211 135678899999998899999999998877421 1110000
Q ss_pred eEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 002564 377 IAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSG 456 (907)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~ 456 (907)
+ .........+|+.+++..++..++.......|.+|.+...
T Consensus 163 -------------------------------------r--~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr 203 (933)
T KOG2114|consen 163 -------------------------------------R--QDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR 203 (933)
T ss_pred -------------------------------------c--eeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCC
Confidence 0 0000122378999999999988444445567999999844
Q ss_pred ccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeee
Q 002564 457 ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE 513 (907)
Q Consensus 457 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 513 (907)
.+..... ..|...+.|..+++....+++++. ..+.+|+.....+...+.
T Consensus 204 ~p~~~~l-------d~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 204 TPSLKVL-------DNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred Ccceeee-------ccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 4233322 367888999999886664555553 588999988666655555
No 337
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.33 E-value=7.7e-05 Score=80.82 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=91.4
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCcee-
Q 002564 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL- 259 (907)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~- 259 (907)
...|.--+++..+++++.|+..|.+.+|+-..++....-.....+.+..+..+++.. ++|.|+..|.|.++-+..+..
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccCCC
Confidence 455556667778899999999999999997766644433323345677777888776 899999999999998876532
Q ss_pred ----eeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 002564 260 ----QSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT 299 (907)
Q Consensus 260 ----~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~ 299 (907)
+......|...|++++|++++..+++|...|.|..-.++.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 2222234788999999999999999999999999888776
No 338
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.32 E-value=1.3e-05 Score=88.74 Aligned_cols=178 Identities=13% Similarity=0.189 Sum_probs=134.2
Q ss_pred cCCeEEEEEEeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEEcCe---EEEEeCC--eeEEEEcccccceEE
Q 002564 24 LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGNH---IAVVKRA--HQVATWSRHSAKVNL 98 (907)
Q Consensus 24 ~~~~~~~~~~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~g~~---I~vw~~~--~~~~~~~~h~~~V~~ 98 (907)
.+...++.+.....+..+|..+.+......-....|+-|.. +++++.+|.+ |.+-|.. +.++++..|++.|..
T Consensus 145 ~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 145 MGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred cCCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 47888899988888999999998776665444444555444 4566666544 7777753 457789999999999
Q ss_pred EEeeCCEEEEEec---------CCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEe--
Q 002564 99 LLLFGEHILSIDI---------DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWN-- 167 (907)
Q Consensus 99 l~~~g~~l~s~~~---------dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd-- 167 (907)
+...|+.|++||. |.-|+|||+...+. +..+.++.+. .-+-|+|.-. ..+++++..|...+-|
T Consensus 223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra----l~PI~~~~~P-~flrf~Psl~-t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA----LSPIQFPYGP-QFLRFHPSLT-TRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred eeccCCeEEEeecccccccccccchhhhhhhhhhhc----cCCcccccCc-hhhhhccccc-ceEEEEecccceeecccc
Confidence 9999999999987 45589999988776 4444444443 2345777654 6889999999999998
Q ss_pred -cCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564 168 -ISTK-KKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209 (907)
Q Consensus 168 -~~~~-~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd 209 (907)
+.+. .-++.+...+..+..+.+|++++.+|.|..+|.|.+|.
T Consensus 297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 3332 23344455567799999999999999999999999997
No 339
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.27 E-value=0.00023 Score=76.34 Aligned_cols=278 Identities=12% Similarity=0.098 Sum_probs=142.4
Q ss_pred CCeEEEEecCCCEEEEEeCCCCEEEEEceecccce-eechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEE
Q 002564 316 PPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR-ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVT 394 (907)
Q Consensus 316 ~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 394 (907)
.|+.+.|.++..-|+.+...|.|.+|.....+... .-.......+...........
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 59 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPG----------------------- 59 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS------------------------
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCc-----------------------
Confidence 47889999998899999999999999887755433 111101000000000000000
Q ss_pred EeeCCceEEEEEeeece-----ecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeecccccc
Q 002564 395 CHMDTAQAYVWRLQNFV-----LGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERS 469 (907)
Q Consensus 395 ~~~~~~~v~~w~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~ 469 (907)
.+-|+.... .+...........++|++++.| +=-++++|+.+|.+.+.|++....+..-.-.....
T Consensus 60 --------~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~ 130 (395)
T PF08596_consen 60 --------KLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFL 130 (395)
T ss_dssp --------SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T
T ss_pred --------ceEEehhhCCcccccccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeecccccccc
Confidence 001111000 0000011111225899999997 55699999999999999998776665532111001
Q ss_pred ccCcCCcEEEEEEc-----CCC---CEEEEEecCCeEEEEECCC---Ccee----eee-ecCcceeEEE-EeeC------
Q 002564 470 NYAHNGEVVGVACD-----STN---TLMISAGYHGDIKVWDFKG---RDLK----SRW-EVGCSLVKIV-YHRV------ 526 (907)
Q Consensus 470 ~~~h~~~v~~l~~s-----~~~---~~l~s~~~dg~i~iwd~~~---~~~~----~~~-~~~~~i~~~~-~s~~------ 526 (907)
.......|+++.|. .|+ -.+++|...|.+.+|.+.- +... ... ...+++..+. +..+
T Consensus 131 ~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~ 210 (395)
T PF08596_consen 131 SKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESAL 210 (395)
T ss_dssp -SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B
T ss_pred ccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCccc
Confidence 12334568888775 233 4778888999999998751 1111 111 2234554444 3221
Q ss_pred -----------C---CEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEEC-----CCCcEEEEEeCCCcEEEEEcC
Q 002564 527 -----------N---GLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS-----EDGKWLLSSGMDGSLRIWDVI 587 (907)
Q Consensus 527 -----------~---~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fs-----pdg~~l~s~s~Dg~I~vwd~~ 587 (907)
+ .-+++...+..++++...+.+...+.....-....+++- ..+..|++-..+|.|++|.++
T Consensus 211 At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 211 ATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp -BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred CchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 0 124444557789999998887766655332233344552 356678888899999999999
Q ss_pred CCceeeEeeeCCc-----eEEEEECCCCceEEEEEecCCeEEEee
Q 002564 588 LARQIDAIHVDVS-----ITALSLSPNMDVLATAHVDQNGVYLWV 627 (907)
Q Consensus 588 ~~~~~~~~~~~~~-----v~~l~~spdg~~lat~~~d~~~i~lW~ 627 (907)
.-+.+..+..... +...+++++|+.++..+... +.++.
T Consensus 291 ~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE--~~l~s 333 (395)
T PF08596_consen 291 SLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSE--IQLFS 333 (395)
T ss_dssp T--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSE--EEEEE
T ss_pred CchHhhcccCCCccccccccccEECCCCCEEEEeCccc--EEEEE
Confidence 9999888876432 66778899999888776654 44444
No 340
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.25 E-value=0.00091 Score=69.49 Aligned_cols=181 Identities=15% Similarity=0.137 Sum_probs=95.1
Q ss_pred EEcCCCCCCEEEEEec-C--CcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEe
Q 002564 144 IMHPDTYLNKVIVGSQ-E--GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT 220 (907)
Q Consensus 144 ~~~p~~~~~~l~~~s~-d--g~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~ 220 (907)
+|.+++ ++|+.++. + ..+.+.|+.+++..+--.+-.........+|+.+.++-......++-.|+.+.+....+.
T Consensus 42 ~ft~dG--~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 42 CFTDDG--RKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp -B-TTS---EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CcCCCC--CEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 456777 56666554 4 467777999998877655432333346677888887766556789999999988765555
Q ss_pred ecCCCCEEEEEEec--CCCCEEEEEe---C-------------------CCcEEEEECCCceeeeeeecccccCeEEEEE
Q 002564 221 HSMRGAVTALAFSS--DGQPLLASGA---S-------------------SGVISIWNLEKRRLQSVIREAHDNAIISLHF 276 (907)
Q Consensus 221 ~~~~~~v~~l~fs~--dg~~~l~sg~---~-------------------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 276 (907)
.+ ...+-...|.. |+. .++..- . .+.|.--|+.+|+....+. -...+..+.|
T Consensus 120 ~p-~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~--~~~wlgH~~f 195 (386)
T PF14583_consen 120 VP-DDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE--DTDWLGHVQF 195 (386)
T ss_dssp ---TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE--ESS-EEEEEE
T ss_pred CC-cccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe--cCccccCccc
Confidence 54 55565566653 444 333221 0 2346667888887666554 5567889999
Q ss_pred ecCCCEEEEEcC----CCc-EEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEE
Q 002564 277 FANEPVLMSASA----DNS-IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331 (907)
Q Consensus 277 ~~~~~~l~s~~~----d~~-i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s 331 (907)
+|..+.+++=+. +.. -|||-++......+.+.... -...+..=-|.|||..+..
T Consensus 196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEE
T ss_pred CCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEE
Confidence 997765555432 332 38898887655444433221 1222333457778876654
No 341
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.24 E-value=0.0034 Score=70.94 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=44.8
Q ss_pred CeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecC
Q 002564 496 GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH 556 (907)
Q Consensus 496 g~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h 556 (907)
|.|.-+|+.+++..-..+...+...-.+.-.+.++++++.+|.++.+|.++|+.+.+++-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 4577888888888777665543322223335667888888999999999999999888744
No 342
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.16 E-value=0.0013 Score=71.69 Aligned_cols=204 Identities=15% Similarity=0.133 Sum_probs=107.7
Q ss_pred cEEEEecCCC------CccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEE
Q 002564 114 NMFIWAFKGI------EENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSC 187 (907)
Q Consensus 114 ~v~vWd~~~~------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l 187 (907)
.|+..|+... +......+.+...........++|++ +.+++ +.+|.-.++.....+....-.+ ...
T Consensus 3 ~i~~~~~~~~~~~~dg~~~~l~~k~lg~~~~~p~~ls~npng--r~v~V-~g~geY~iyt~~~~r~k~~G~g-----~~~ 74 (443)
T PF04053_consen 3 EIRTANLKNISEIKDGERLPLSVKELGSCEIYPQSLSHNPNG--RFVLV-CGDGEYEIYTALAWRNKAFGSG-----LSF 74 (443)
T ss_dssp EEEEEE--S-----TTS-B----EEEEE-SS--SEEEE-TTS--SEEEE-EETTEEEEEETTTTEEEEEEE------SEE
T ss_pred ceEEEECcCCCccCCCceeeEEeccCCCCCcCCeeEEECCCC--CEEEE-EcCCEEEEEEccCCcccccCce-----eEE
Confidence 3445555443 33333345555555667788899999 77777 5678888888555555443333 457
Q ss_pred EEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeccc
Q 002564 188 VSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH 267 (907)
Q Consensus 188 ~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h 267 (907)
+|.+.+ ..|+-..++.|.|+.--..+....+..+ ..+..+-. |. +|...+. +.|.+||+++++.+..+. .
T Consensus 75 vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~~--~~~~~If~---G~-LL~~~~~-~~i~~yDw~~~~~i~~i~--v 144 (443)
T PF04053_consen 75 VWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKLP--FSVEKIFG---GN-LLGVKSS-DFICFYDWETGKLIRRID--V 144 (443)
T ss_dssp EE-TSS-EEEEE-TTS-EEEEETTEE-TT-----S--S-EEEEE----SS-SEEEEET-TEEEEE-TTT--EEEEES--S
T ss_pred EEecCc-cEEEEECCCeEEEEEcCccccceEEcCC--cccceEEc---Cc-EEEEECC-CCEEEEEhhHcceeeEEe--c
Confidence 788855 4677676889999633233333344433 23444443 77 6666654 489999999999999987 2
Q ss_pred ccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC-------CCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEE
Q 002564 268 DNAIISLHFFANEPVLMSASADNSIKMWIFDTT-------DGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340 (907)
Q Consensus 268 ~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~-------~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~i 340 (907)
. +|..+.|++++.+++..+. ..+.+++.+.. ++..........-...|.+..|..+ .++..+.. .++.
T Consensus 145 ~-~vk~V~Ws~~g~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 145 S-AVKYVIWSDDGELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp --E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred C-CCcEEEEECCCCEEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 2 3899999999999998885 47888876543 1111123333333578888899866 44444444 5555
No 343
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=7.5e-05 Score=82.01 Aligned_cols=184 Identities=12% Similarity=0.168 Sum_probs=128.9
Q ss_pred ccceEEEEeeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe
Q 002564 93 SAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK 172 (907)
Q Consensus 93 ~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~ 172 (907)
...+.+.++.+.+|+-|..+|.|++.+...... +...+... .-+| .++++|+.||+|.|-.+-+.+
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~------~~~~~s~~------~~~G--ey~asCS~DGkv~I~sl~~~~ 104 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNPK------TNFDHSSS------ILEG--EYVASCSDDGKVVIGSLFTDD 104 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCccc------cccccccc------ccCC--ceEEEecCCCcEEEeeccCCc
Confidence 345666777899999999999999998765421 11111111 3445 799999999999999988888
Q ss_pred EEEEEcCCCCCEEEEEEcCC-----CCEEEEEecCCeEEEEEccC-CceEEEEeecCCCCEEEEEEecCCCCEEEEEeCC
Q 002564 173 KLYEFKGWGSSISSCVSSPA-----LDVVAVGCSDGKIHVHNVRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGASS 246 (907)
Q Consensus 173 ~~~~~~~h~~~I~~l~~sp~-----~~~la~g~~dg~I~iwd~~~-~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~d 246 (907)
...++.- ..++.+++++|+ .+.+++|+..| +.++.-.- |...........|+|.++.|. |. ++|-++.+
T Consensus 105 ~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~-lIAWand~ 179 (846)
T KOG2066|consen 105 EITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GN-LIAWANDD 179 (846)
T ss_pred cceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--Cc-EEEEecCC
Confidence 7776664 678999999998 45788999888 77775331 111122233347899999997 44 77777655
Q ss_pred CcEEEEECCCceeeeeeeccccc-----CeEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 002564 247 GVISIWNLEKRRLQSVIREAHDN-----AIISLHFFANEPVLMSASADNSIKMWIFD 298 (907)
Q Consensus 247 g~I~iwd~~~~~~~~~~~~~h~~-----~V~~l~~~~~~~~l~s~~~d~~i~vw~~~ 298 (907)
-|+|||..+++.+..+...+.. --..+.|.++. .|+.|= ..+|++..+.
T Consensus 180 -Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 180 -GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGW-GDSVKICSIK 233 (846)
T ss_pred -CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEec-CCeEEEEEEe
Confidence 5999999999988888744421 23467777665 455554 3478888776
No 344
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.0045 Score=67.24 Aligned_cols=279 Identities=12% Similarity=0.139 Sum_probs=182.1
Q ss_pred EEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcC-CCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCC
Q 002564 249 ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA-DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR 327 (907)
Q Consensus 249 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~ 327 (907)
+.+++..+.+....+. .+. ....+...+++..+..... ...+... +.... ........-......+..++.+.
T Consensus 13 ~~v~~~~~~~~~~~~~-~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~--~~~~n--~~~~~~~~g~~~p~~i~v~~~~~ 86 (381)
T COG3391 13 VSVINTGTNKVTAAIS-LGR-GPGGVAVNPDGTQVYVANSGSNDVSVI--DATSN--TVTQSLSVGGVYPAGVAVNPAGN 86 (381)
T ss_pred eEEEeecccEEEEEee-cCC-CCceeEEcCccCEEEEEeecCceeeec--ccccc--eeeeeccCCCccccceeeCCCCC
Confidence 6667766666665555 222 5667777888854444332 2233333 22211 11111111114556788888777
Q ss_pred EEE-EEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEE
Q 002564 328 HIL-SAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWR 406 (907)
Q Consensus 328 ~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~ 406 (907)
.++ ....++.+.+.|............
T Consensus 87 ~vyv~~~~~~~v~vid~~~~~~~~~~~v---------------------------------------------------- 114 (381)
T COG3391 87 KVYVTTGDSNTVSVIDTATNTVLGSIPV---------------------------------------------------- 114 (381)
T ss_pred eEEEecCCCCeEEEEcCcccceeeEeee----------------------------------------------------
Confidence 554 444557888888554433322211
Q ss_pred eeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEc
Q 002564 407 LQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTA---GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACD 483 (907)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 483 (907)
......++++++++.+.++.. ++.+.+.|..++....... .+- .+ ..++++
T Consensus 115 -----------------G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-------vG~-~P-~~~a~~ 168 (381)
T COG3391 115 -----------------GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-------VGN-TP-TGVAVD 168 (381)
T ss_pred -----------------ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-------cCC-Cc-ceEEEC
Confidence 024567899999988888776 6899999999988887743 122 23 899999
Q ss_pred CCCCEEEEEe-cCCeEEEEECCCCceee-----eeecCcceeEEEEeeCCCEEEEEeCC---CeEEEEEcccceeEEE-e
Q 002564 484 STNTLMISAG-YHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNGLLATVADD---LVIRLFDVVALRMVRK-F 553 (907)
Q Consensus 484 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~-----~~~~~~~i~~~~~s~~~~~la~~~~d---g~I~v~d~~~~~~~~~-~ 553 (907)
|+|..++.+. .++.|.+.|.......+ ..........+.++|+|..+.+.... +.+...|..++..... .
T Consensus 169 p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~ 248 (381)
T COG3391 169 PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL 248 (381)
T ss_pred CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence 9999666655 78999999987766663 23334566788999999977776655 5999999998887765 2
Q ss_pred ecCCCCeeeEEECCCCcEEEEEeC-CCcEEEEEcCCCceeeEeeeCCc----eEEEEECCCCc
Q 002564 554 EGHTDRITDFCFSEDGKWLLSSGM-DGSLRIWDVILARQIDAIHVDVS----ITALSLSPNMD 611 (907)
Q Consensus 554 ~~h~~~I~~l~fspdg~~l~s~s~-Dg~I~vwd~~~~~~~~~~~~~~~----v~~l~~spdg~ 611 (907)
..-......+.++|+|+++.+... .+.+.+-|..+.+....+..... +..+++.+...
T Consensus 249 ~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 311 (381)
T COG3391 249 PVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLYD 311 (381)
T ss_pred ccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeecc
Confidence 222214567899999999887744 48899999998888877654433 66666665443
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.13 E-value=0.00096 Score=72.68 Aligned_cols=182 Identities=16% Similarity=0.131 Sum_probs=97.6
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (907)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 504 (907)
+.....+|.+.++ +++-..++.|.++.--.......+. ....+..+.. |.+|...+. +.|.+||..
T Consensus 69 G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~---------~~~~~~~If~---G~LL~~~~~-~~i~~yDw~ 134 (443)
T PF04053_consen 69 GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIK---------LPFSVEKIFG---GNLLGVKSS-DFICFYDWE 134 (443)
T ss_dssp EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT--------------SS-EEEEE----SSSEEEEET-TEEEEE-TT
T ss_pred CceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEc---------CCcccceEEc---CcEEEEECC-CCEEEEEhh
Confidence 3445677888555 5555568889997433333322332 1123444443 777777665 489999999
Q ss_pred CCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccc-----------eeEEEeecCCCCeeeEEECCCCcEEE
Q 002564 505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-----------RMVRKFEGHTDRITDFCFSEDGKWLL 573 (907)
Q Consensus 505 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~-----------~~~~~~~~h~~~I~~l~fspdg~~l~ 573 (907)
+++.++.+.... |..+.|++++.++|..+.+ .+.|++.+.. .....+..-...|.+.+|..| .++
T Consensus 135 ~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fi 210 (443)
T PF04053_consen 135 TGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFI 210 (443)
T ss_dssp T--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEE
T ss_pred HcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEE
Confidence 999999998764 8999999999999999865 6667665433 022233222568999999766 444
Q ss_pred EEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeec
Q 002564 574 SSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (907)
Q Consensus 574 s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~ 628 (907)
-.+.. .|+. +..|..-..-....++.=+...|..+.+.....+++ |..+.+
T Consensus 211 YtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~-v~~~~l 261 (443)
T PF04053_consen 211 YTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGN-VISYEL 261 (443)
T ss_dssp EE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT---EEEEE-
T ss_pred EEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCC-EEEEEE
Confidence 44444 6776 444544333334566666777776677777777763 666654
No 346
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.13 E-value=0.0013 Score=70.90 Aligned_cols=289 Identities=11% Similarity=0.106 Sum_probs=143.4
Q ss_pred CCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecC----------------
Q 002564 160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM---------------- 223 (907)
Q Consensus 160 dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~---------------- 223 (907)
.+.+.+||+++++....... ...+....|||+|+.+|... ++.|.+++..++...+--..+.
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 46789999999766554433 67888999999999999876 5789999988774332222110
Q ss_pred CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccc--cCeEEEEEecCCCEEEEEcCCCcEEEEEccCCC
Q 002564 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHD--NAIISLHFFANEPVLMSASADNSIKMWIFDTTD 301 (907)
Q Consensus 224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~ 301 (907)
-+.-.++-|||||+.++..--.+..|..+.+..... .+. ..+..+.+-.- |..+-.+++|-++..+
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~------~~~~yp~~~~~~YPk~------G~~np~v~l~v~~~~~ 167 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSP------PDSQYPEVESIRYPKA------GDPNPRVSLFVVDLAS 167 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESS------STESS-EEEEEE--BT------TS---EEEEEEEESSS
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEeeccCC------ccccCCcccccccCCC------CCcCCceEEEEEECCC
Confidence 112356889999994444444555555554311100 000 12333433221 2223344444444333
Q ss_pred CCcceeEec---cCCCCCCeEEEEecCCCEEEEE--eCCCC---EEEEEceecccceeechhhhhHHHhhccchhhhccc
Q 002564 302 GDPRLLRFR---SGHSAPPLCIRFYANGRHILSA--GQDRA---FRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKL 373 (907)
Q Consensus 302 ~~~~~~~~~---~~h~~~v~~i~~~~~g~~l~s~--~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (907)
+....+... ..-..-+..+.|.++++.++.. .++.. +.++|..++......
T Consensus 168 ~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~--------------------- 226 (353)
T PF00930_consen 168 GKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVL--------------------- 226 (353)
T ss_dssp TCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEE---------------------
T ss_pred CcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEE---------------------
Confidence 332222222 2334567888999988744433 33322 222333221111000
Q ss_pred CceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEc-CCC-CEEEEEeCCC--cEE
Q 002564 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS-ACG-NFAVLGTAGG--WIE 449 (907)
Q Consensus 374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g-~~l~~g~~dg--~i~ 449 (907)
.....+--.......+. +++ .++.....+| +|+
T Consensus 227 -------------------------------------------~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly 263 (353)
T PF00930_consen 227 -------------------------------------------EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLY 263 (353)
T ss_dssp -------------------------------------------EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEE
T ss_pred -------------------------------------------EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEE
Confidence 00000000111233333 444 4555555666 566
Q ss_pred EEeCCCCccceeeeccccccccCcCCcEEE-EEEcCCCCEEE-EEecC----CeEEEEECCCCceeeeeecCcce-eEEE
Q 002564 450 RFNLQSGISRGSYLDMSERSNYAHNGEVVG-VACDSTNTLMI-SAGYH----GDIKVWDFKGRDLKSRWEVGCSL-VKIV 522 (907)
Q Consensus 450 i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~-s~~~d----g~i~iwd~~~~~~~~~~~~~~~i-~~~~ 522 (907)
+++...+... .+ ....-.|.. +.++++++.+. ++..+ ..|..-++..+.....+...... ..+.
T Consensus 264 ~~~~~~~~~~-~l--------T~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~ 334 (353)
T PF00930_consen 264 LYDLDGGKPR-QL--------TSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSAS 334 (353)
T ss_dssp EEETTSSEEE-ES--------S-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEE
T ss_pred EEccccccee-cc--------ccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEE
Confidence 6666666533 22 234455644 67788876654 45442 25656666623344445444444 4999
Q ss_pred EeeCCCEEEEEeC
Q 002564 523 YHRVNGLLATVAD 535 (907)
Q Consensus 523 ~s~~~~~la~~~~ 535 (907)
|||++++++..+.
T Consensus 335 ~Spdg~y~v~~~s 347 (353)
T PF00930_consen 335 FSPDGKYYVDTYS 347 (353)
T ss_dssp E-TTSSEEEEEEE
T ss_pred ECCCCCEEEEEEc
Confidence 9999998877654
No 347
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.11 E-value=0.021 Score=61.81 Aligned_cols=76 Identities=12% Similarity=0.115 Sum_probs=66.0
Q ss_pred CcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccce
Q 002564 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR 548 (907)
Q Consensus 472 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~ 548 (907)
.....|.+.+++|+...++.|+.||.|.+||...+... ..+..-..+.++|||+|.++++|++.|.+.+||+.-..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 67789999999999999999999999999998776433 33555778899999999999999999999999987543
No 348
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.10 E-value=0.0048 Score=69.73 Aligned_cols=165 Identities=13% Similarity=0.187 Sum_probs=98.6
Q ss_pred cEEEEeCCCCccceeeecccccccc-CcCCcEEEEEEcCCCC---EEEEEecCCeEEEEECCCCceeee--------e--
Q 002564 447 WIERFNLQSGISRGSYLDMSERSNY-AHNGEVVGVACDSTNT---LMISAGYHGDIKVWDFKGRDLKSR--------W-- 512 (907)
Q Consensus 447 ~i~i~d~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~---~l~s~~~dg~i~iwd~~~~~~~~~--------~-- 512 (907)
.|.-.|+.+|+..-.++......-. .-.....-+.+..+|+ .++.+..+|.+.+.|-.+++++.. +
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 5777888899888887632111000 0001122233334665 778899999999999999987521 1
Q ss_pred --ecC--cce----------------------------eEEEEeeCCCEEEEEeCC------------------------
Q 002564 513 --EVG--CSL----------------------------VKIVYHRVNGLLATVADD------------------------ 536 (907)
Q Consensus 513 --~~~--~~i----------------------------~~~~~s~~~~~la~~~~d------------------------ 536 (907)
... .++ ..++++|+..++.+...+
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 000 000 125566666655544332
Q ss_pred ---------CeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEE--EE
Q 002564 537 ---------LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITA--LS 605 (907)
Q Consensus 537 ---------g~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~--l~ 605 (907)
+.+.-+|+.+++.+-+.........+. ..-.+..++.++.||.++.+|..+|+.+-.++....+.+ +.
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~t 510 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVT 510 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEE
Confidence 457778888888877665332212222 122445677788899999999999999999887665333 23
Q ss_pred ECCCCce
Q 002564 606 LSPNMDV 612 (907)
Q Consensus 606 ~spdg~~ 612 (907)
+.-+|+.
T Consensus 511 y~~~G~q 517 (527)
T TIGR03075 511 YEQDGKQ 517 (527)
T ss_pred EEeCCEE
Confidence 3345554
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.06 E-value=0.0046 Score=67.53 Aligned_cols=110 Identities=12% Similarity=0.110 Sum_probs=63.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (907)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 504 (907)
+++..+++||+|++++.-+.+|.+.+.+..-.+....+. ..-......+.|..+...++.- ...+.+....
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~-------~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~ 287 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD-------TDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPD 287 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee-------cCcCCCCcEEEEECCCcEEEEe--CCEEEEECCC
Confidence 689999999999999999999999998876665555554 1223445566665443222221 2233333211
Q ss_pred CCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCC
Q 002564 505 GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT 557 (907)
Q Consensus 505 ~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~ 557 (907)
. ..+.|.-++..++..--|| +||+.-.+.+.+++.....
T Consensus 288 ~-------------~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~~~ 326 (410)
T PF04841_consen 288 G-------------DSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVPDST 326 (410)
T ss_pred C-------------CceEEeccCceEEeccCCc-eEEEeCCceEEEEECCHHH
Confidence 1 1123333344444444454 7777666666666655433
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.03 E-value=0.0025 Score=63.35 Aligned_cols=214 Identities=12% Similarity=0.112 Sum_probs=118.3
Q ss_pred CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC
Q 002564 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (907)
Q Consensus 224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 303 (907)
...+..++|.|+...++++....+.|..++. +|+.+..+...-.+..-++++..++.++++.-.++.+.++.++..+..
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 3469999999987768888889999999997 578888887444567889999988877777767899999988554322
Q ss_pred cce--eE-----eccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecc---cceeechhhhhHHHhhccchhhhccc
Q 002564 304 PRL--LR-----FRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ---QSRELSQRHVAKRARKLKMKEEELKL 373 (907)
Q Consensus 304 ~~~--~~-----~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (907)
... .. ....+...+-.++|.+.++.|+.+-......++.+.... ............
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~-------------- 165 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD-------------- 165 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH---------------
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc--------------
Confidence 111 11 112345678999999988888888777777787765411 110000000000
Q ss_pred CceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEe
Q 002564 374 KPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISAC-GNFAVLGTAGGWIERFN 452 (907)
Q Consensus 374 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~g~~dg~i~i~d 452 (907)
.......+.+++++|. |++++....+..|..+|
T Consensus 166 ----------------------------------------------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d 199 (248)
T PF06977_consen 166 ----------------------------------------------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD 199 (248)
T ss_dssp ----------------------------------------------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-
T ss_pred ----------------------------------------------ccceeccccceEEcCCCCeEEEEECCCCeEEEEC
Confidence 0011145677788775 45666777777888888
Q ss_pred CCCCccceeeeccccc-cccCcCCcEEEEEEcCCCCEEEEEecCCeEEE
Q 002564 453 LQSGISRGSYLDMSER-SNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 500 (907)
Q Consensus 453 ~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 500 (907)
..|+.+..+...... .....-...-+|+++++|++.+++ .-+..++
T Consensus 200 -~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~ 246 (248)
T PF06977_consen 200 -RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYR 246 (248)
T ss_dssp -TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEE
T ss_pred -CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEE
Confidence 556655554421110 001112468899999999765554 4444443
No 351
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.03 E-value=0.0012 Score=70.88 Aligned_cols=242 Identities=11% Similarity=0.147 Sum_probs=129.7
Q ss_pred CeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCc----------------------c-----------------eeEec
Q 002564 270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP----------------------R-----------------LLRFR 310 (907)
Q Consensus 270 ~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~----------------------~-----------------~~~~~ 310 (907)
.|+.+.|.++..-|+++...|.|.+|.+....... . ....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998899999999999999775442111 0 01111
Q ss_pred cCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeeccccccccc
Q 002564 311 SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC 390 (907)
Q Consensus 311 ~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 390 (907)
....++|++++.+.=| +++.|..+|.+.+.|++.+..+..-....
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~---------------------------------- 127 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRE---------------------------------- 127 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG----------------------------------
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccc----------------------------------
Confidence 2236788888887544 89999999999999997665444321110
Q ss_pred ceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEc-----CCC---CEEEEEeCCCcEEEEeCCC---Cccc
Q 002564 391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS-----ACG---NFAVLGTAGGWIERFNLQS---GISR 459 (907)
Q Consensus 391 ~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g---~~l~~g~~dg~i~i~d~~~---~~~~ 459 (907)
+ .........++++.|+ .|+ -.+++|++.|.+.+|.+.- +...
T Consensus 128 ------------------------~--~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~ 181 (395)
T PF08596_consen 128 ------------------------S--FLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFS 181 (395)
T ss_dssp ----------------------------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EE
T ss_pred ------------------------c--ccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceE
Confidence 0 0000111334444443 223 4688999999999998742 2222
Q ss_pred eeeeccccccccCcCCcEEEEE-EcCCC--------------------CEEEEEecCCeEEEEECCCCceeeeeecC-cc
Q 002564 460 GSYLDMSERSNYAHNGEVVGVA-CDSTN--------------------TLMISAGYHGDIKVWDFKGRDLKSRWEVG-CS 517 (907)
Q Consensus 460 ~~~~~~~~~~~~~h~~~v~~l~-~s~~~--------------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~ 517 (907)
..+.. ....+.+.|..+. ++.+. .-++....+..++++...+.+..+..... ..
T Consensus 182 v~~~~----~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~ 257 (395)
T PF08596_consen 182 VQFAG----ATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFL 257 (395)
T ss_dssp EEEEE----EE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EE
T ss_pred EEEee----ccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccc
Confidence 22211 0124556665555 32210 12334444688999999887766554422 22
Q ss_pred eeEEEE-----eeCCCEEEEEeCCCeEEEEEcccceeEEEeecCC----CCeeeEEECCCCcEEEEEe
Q 002564 518 LVKIVY-----HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT----DRITDFCFSEDGKWLLSSG 576 (907)
Q Consensus 518 i~~~~~-----s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~----~~I~~l~fspdg~~l~s~s 576 (907)
...+++ ...+..|++-..+|.|++|.+...+.+..+.-+. ..+...+|+++|..++-.+
T Consensus 258 ~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 258 CSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp EEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred cceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeC
Confidence 233344 2356788888999999999999998888776542 2355667777777655444
No 352
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.96 E-value=0.014 Score=63.17 Aligned_cols=115 Identities=14% Similarity=0.143 Sum_probs=80.9
Q ss_pred CCEEEEEEecCCCCEEEEEe----CCCc----EEEEECCCce--eeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEE
Q 002564 225 GAVTALAFSSDGQPLLASGA----SSGV----ISIWNLEKRR--LQSVIREAHDNAIISLHFFANEPVLMSASADNSIKM 294 (907)
Q Consensus 225 ~~v~~l~fs~dg~~~l~sg~----~dg~----I~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~v 294 (907)
....++.|+....+.+.+-. .+|. -.+|++..++ .+........+.|.+++++|++..++.|+.||+|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 34456666654333333321 2332 3456665543 333333457889999999999999999999999999
Q ss_pred EEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEcee
Q 002564 295 WIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345 (907)
Q Consensus 295 w~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~ 345 (907)
||...+. .......-.++.++|+|+|..+++|+..|.+.+||+.-
T Consensus 286 yD~~~~~------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 286 YDTTRGV------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEcCCCe------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 9876542 22223456689999999999999999999999999864
No 353
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.96 E-value=0.0016 Score=69.24 Aligned_cols=179 Identities=15% Similarity=0.159 Sum_probs=112.9
Q ss_pred CCEEEEEeC---------C-CcEEEEeCCCC----ccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEE
Q 002564 436 GNFAVLGTA---------G-GWIERFNLQSG----ISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501 (907)
Q Consensus 436 g~~l~~g~~---------d-g~i~i~d~~~~----~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 501 (907)
..++++|+. . |.|.+|++... ....... .....++|++++-- .+ .++.+. .+.|.+|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~------~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~ 112 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH------STEVKGPVTAICSF-NG-RLVVAV-GNKLYVY 112 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE------EEEESS-EEEEEEE-TT-EEEEEE-TTEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE------EEeecCcceEhhhh-CC-EEEEee-cCEEEEE
Confidence 578888874 2 99999999884 1122111 13457889999877 33 344443 4899999
Q ss_pred ECCCCc-eeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEccc-ceeEEEee--cCCCCeeeEEECCCCcEEEEEeC
Q 002564 502 DFKGRD-LKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA-LRMVRKFE--GHTDRITDFCFSEDGKWLLSSGM 577 (907)
Q Consensus 502 d~~~~~-~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~-~~~~~~~~--~h~~~I~~l~fspdg~~l~s~s~ 577 (907)
++...+ ....-..+.++........++++++|.....+.++..+. ...+..+. .....++++.|-+|++.++.+..
T Consensus 113 ~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~ 192 (321)
T PF03178_consen 113 DLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK 192 (321)
T ss_dssp EEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET
T ss_pred EccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC
Confidence 999888 665555555445555555578999999988888885543 22222222 23455889999877778999999
Q ss_pred CCcEEEEEcCC-------Cc----eeeEeeeCCceEEE---EECCC--Cc------eEEEEEecCCeEE
Q 002564 578 DGSLRIWDVIL-------AR----QIDAIHVDVSITAL---SLSPN--MD------VLATAHVDQNGVY 624 (907)
Q Consensus 578 Dg~I~vwd~~~-------~~----~~~~~~~~~~v~~l---~~spd--g~------~lat~~~d~~~i~ 624 (907)
+|.+.++..+. +. .+..+.....|+++ ++.|. +. .++.++.+| +|.
T Consensus 193 ~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G-~Ig 260 (321)
T PF03178_consen 193 DGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDG-SIG 260 (321)
T ss_dssp TSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS--EE
T ss_pred CCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCC-EEE
Confidence 99999998763 22 33555666678888 66662 22 377777888 466
No 354
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.95 E-value=0.0037 Score=62.20 Aligned_cols=185 Identities=11% Similarity=0.113 Sum_probs=115.7
Q ss_pred CCCceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEE
Q 002564 423 NPTAVKACTISACGN-FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVW 501 (907)
Q Consensus 423 ~~~~v~~~~~s~~g~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 501 (907)
-...++.+++.|+.+ ++++....+.|..++.+ |+.++.+.. .-.+..-+|++..++.++++.-.++.+.++
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l-------~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL-------DGFGDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE--------SS-SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC-------CCCCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 345699999999754 66777788899999974 677776652 234678899999888888877678999999
Q ss_pred ECCCCc------eeeeee------cCcceeEEEEeeCCCEEEEEeCCCeEEEEEccc---ceeEE--Ee------ecCCC
Q 002564 502 DFKGRD------LKSRWE------VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA---LRMVR--KF------EGHTD 558 (907)
Q Consensus 502 d~~~~~------~~~~~~------~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~---~~~~~--~~------~~h~~ 558 (907)
++.... ....+. ....+-.++|.+.++.|.++.+..-..+|.+.. ...+. .. .....
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 884321 112222 225688999999988888888777777777764 21111 11 11345
Q ss_pred CeeeEEECCC-CcEEEEEeCCCcEEEEEcCCCceeeEeeeCC----------ceEEEEECCCCceEEEE
Q 002564 559 RITDFCFSED-GKWLLSSGMDGSLRIWDVILARQIDAIHVDV----------SITALSLSPNMDVLATA 616 (907)
Q Consensus 559 ~I~~l~fspd-g~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~----------~v~~l~~spdg~~lat~ 616 (907)
.+.+++++|. |.+++.+..+..|..+| .+|+.+..+.... ..-.++|.++|++.++.
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 5788999985 56777778889999999 7788888776543 27899999999766554
No 355
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.94 E-value=0.0062 Score=64.81 Aligned_cols=218 Identities=15% Similarity=0.186 Sum_probs=129.1
Q ss_pred cEEEEecCCCCccccceeeEecCCCcccEEE----EcCCC--CCCEEEEEec----------CCcEEEEecCCC-----e
Q 002564 114 NMFIWAFKGIEENLAPVGHVKLDDKFTPTCI----MHPDT--YLNKVIVGSQ----------EGSLQLWNISTK-----K 172 (907)
Q Consensus 114 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~--~~~~l~~~s~----------dg~i~iwd~~~~-----~ 172 (907)
.|++.|..+.+. +.++.+.......++ +..+. ...++++|+. .|.|.++++... +
T Consensus 3 ~i~l~d~~~~~~----~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~ 78 (321)
T PF03178_consen 3 SIRLVDPTTFEV----LDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFK 78 (321)
T ss_dssp EEEEEETTTSSE----EEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----E
T ss_pred EEEEEeCCCCeE----EEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceE
Confidence 467777766665 555555543333322 22210 1267887754 289999999884 2
Q ss_pred --EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCc-eEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcE
Q 002564 173 --KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVI 249 (907)
Q Consensus 173 --~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~-~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I 249 (907)
.++.. ...++|++++.- ++ .|+++. .+.|.+|++...+ ....-..+....++++... +. ++++|+....+
T Consensus 79 l~~i~~~-~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~-~I~vgD~~~sv 151 (321)
T PF03178_consen 79 LKLIHST-EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KN-YILVGDAMKSV 151 (321)
T ss_dssp EEEEEEE-EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TT-EEEEEESSSSE
T ss_pred EEEEEEE-eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--cc-EEEEEEcccCE
Confidence 22233 337889999877 33 455544 4799999999888 4444444334467777665 44 78899988888
Q ss_pred EEEECC--CceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCC----CCc-ceeEeccCC-CCCCeEE-
Q 002564 250 SIWNLE--KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD----GDP-RLLRFRSGH-SAPPLCI- 320 (907)
Q Consensus 250 ~iwd~~--~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~----~~~-~~~~~~~~h-~~~v~~i- 320 (907)
.++... ..+....-+......++++.|.+++..++.+..+|.+.++.++... ... ++.....-| ...|+++
T Consensus 152 ~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~ 231 (321)
T PF03178_consen 152 SLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFR 231 (321)
T ss_dssp EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEE
T ss_pred EEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEE
Confidence 877443 3334433333445678999999777799999999999999887421 111 233222222 3456666
Q ss_pred --EEec--CC------CEEEEEeCCCCEEEEE
Q 002564 321 --RFYA--NG------RHILSAGQDRAFRLFS 342 (907)
Q Consensus 321 --~~~~--~g------~~l~s~~~dg~i~iwd 342 (907)
+..| .+ ..++.++.+|.|.+.-
T Consensus 232 ~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 232 RGSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp E--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred EEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 3334 12 2488888999998543
No 356
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.93 E-value=0.00088 Score=76.82 Aligned_cols=135 Identities=15% Similarity=0.224 Sum_probs=97.1
Q ss_pred cCCcEEEEecCCCeEEEEEcCCCCC-EEEEEEcC-----CCCEEEEEecCCeEEEEEccCCc--eEEEEe--ecCCCCEE
Q 002564 159 QEGSLQLWNISTKKKLYEFKGWGSS-ISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYDE--ELVTFT--HSMRGAVT 228 (907)
Q Consensus 159 ~dg~i~iwd~~~~~~~~~~~~h~~~-I~~l~~sp-----~~~~la~g~~dg~I~iwd~~~~~--~~~~~~--~~~~~~v~ 228 (907)
..+.|+-.|++.|+.+..++.|... |..++-.. +..-.++|-.+..+..||.+-.. .+..-. -......+
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 4567999999999999999987654 66655432 12356778888999999998542 221111 11245788
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEc
Q 002564 229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297 (907)
Q Consensus 229 ~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~ 297 (907)
|++-+.+| .+|+|+.+|.|++||--..+....+. +-..+|.+|..+.||+++++.+ +..+.+++.
T Consensus 582 ~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 582 CFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALP-GLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred EEEecCCc--eEEEEeCCCcEEeecccchhhhhcCC-CCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 88888888 59999999999999954334333444 7789999999999999888777 456666654
No 357
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.89 E-value=0.018 Score=60.05 Aligned_cols=315 Identities=15% Similarity=0.143 Sum_probs=134.9
Q ss_pred ECCCceeeeeeeccccc-----CeEEEEEecCCCEEE-EEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCC
Q 002564 253 NLEKRRLQSVIREAHDN-----AIISLHFFANEPVLM-SASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 326 (907)
Q Consensus 253 d~~~~~~~~~~~~~h~~-----~V~~l~~~~~~~~l~-s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g 326 (907)
|..+|..+..+. .+.. ..+.=+|.++|+.|+ ++..||.-.+|.++..++....+.... .........++++
T Consensus 16 D~~TG~~VtrLT-~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~--g~~~~g~~~s~~~ 92 (386)
T PF14583_consen 16 DPDTGHRVTRLT-PPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP--GDNTFGGFLSPDD 92 (386)
T ss_dssp -TTT--EEEE-S--TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---B-TTT-EE-TTS
T ss_pred CCCCCceEEEec-CCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC--CCCccceEEecCC
Confidence 666776666665 2222 222335678886555 455588888887777765433333222 1223356677888
Q ss_pred CEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEe-eCCceEEEE
Q 002564 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCH-MDTAQAYVW 405 (907)
Q Consensus 327 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~v~~w 405 (907)
+.++.......|+-.|+.+.+....+..+ .+|....+.. ..+.+..+-
T Consensus 93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p-------------------------------~~~~g~gt~v~n~d~t~~~g 141 (386)
T PF14583_consen 93 RALYYVKNGRSLRRVDLDTLEERVVYEVP-------------------------------DDWKGYGTWVANSDCTKLVG 141 (386)
T ss_dssp SEEEEEETTTEEEEEETTT--EEEEEE---------------------------------TTEEEEEEEEE-TTSSEEEE
T ss_pred CeEEEEECCCeEEEEECCcCcEEEEEECC-------------------------------cccccccceeeCCCccEEEE
Confidence 88877666677888887765433222110 1111100000 001110000
Q ss_pred -EeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcC
Q 002564 406 -RLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS 484 (907)
Q Consensus 406 -~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 484 (907)
....... .+... +... +-+..+-....|...|+.+|+....+ .-...+..+.++|
T Consensus 142 ~e~~~~d~-----~~l~~---------~~~f-~e~~~a~p~~~i~~idl~tG~~~~v~---------~~~~wlgH~~fsP 197 (386)
T PF14583_consen 142 IEISREDW-----KPLTK---------WKGF-REFYEARPHCRIFTIDLKTGERKVVF---------EDTDWLGHVQFSP 197 (386)
T ss_dssp EEEEGGG----------S---------HHHH-HHHHHC---EEEEEEETTT--EEEEE---------EESS-EEEEEEET
T ss_pred EEEeehhc-----cCccc---------cHHH-HHHHhhCCCceEEEEECCCCceeEEE---------ecCccccCcccCC
Confidence 0000000 00000 0000 00000011234566677777765554 3445677889999
Q ss_pred CCCEEEEEecCC-----eEEEEEC--CCCceeeee--ecCcceeEEEEeeCCCEEEEEeC-----CCeEEEEEcccceeE
Q 002564 485 TNTLMISAGYHG-----DIKVWDF--KGRDLKSRW--EVGCSLVKIVYHRVNGLLATVAD-----DLVIRLFDVVALRMV 550 (907)
Q Consensus 485 ~~~~l~s~~~dg-----~i~iwd~--~~~~~~~~~--~~~~~i~~~~~s~~~~~la~~~~-----dg~I~v~d~~~~~~~ 550 (907)
....+++-+..| .-|||-+ ......... .....+..=-|.|||..+..-+. +..|.-+|..+++..
T Consensus 198 ~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 198 TDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR 277 (386)
T ss_dssp TEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred CCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence 776665554332 1255544 333222222 22245556678999986665332 446777888887654
Q ss_pred EEeecCCCCeeeEEECCCCcEEEEEeCCC----------------cEEEEEcCCCceeeEeeeCC-----------ceEE
Q 002564 551 RKFEGHTDRITDFCFSEDGKWLLSSGMDG----------------SLRIWDVILARQIDAIHVDV-----------SITA 603 (907)
Q Consensus 551 ~~~~~h~~~I~~l~fspdg~~l~s~s~Dg----------------~I~vwd~~~~~~~~~~~~~~-----------~v~~ 603 (907)
.... ......+.-++||++++-=+.|. .|+++++..++.....++.. .=..
T Consensus 278 ~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPh 355 (386)
T PF14583_consen 278 RLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPH 355 (386)
T ss_dssp EEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT---
T ss_pred EEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCC
Confidence 3222 22345666789999887444332 56678888776543333211 1246
Q ss_pred EEECCCCceEEEEEecCCeEEEee
Q 002564 604 LSLSPNMDVLATAHVDQNGVYLWV 627 (907)
Q Consensus 604 l~~spdg~~lat~~~d~~~i~lW~ 627 (907)
..|||||++++..+.-.+...||-
T Consensus 356 p~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 356 PSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp -EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred CccCCCCCEEEEECCCCCCccEEE
Confidence 899999999888776544455554
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.89 E-value=0.018 Score=63.06 Aligned_cols=194 Identities=12% Similarity=0.121 Sum_probs=104.0
Q ss_pred EEEEe-CCeeEEEEcccccceEEEEe-eCCEEEEEecCCcEEEEecCCCCcccc---ceeeEecCCCcccEEEEcCCCCC
Q 002564 77 IAVVK-RAHQVATWSRHSAKVNLLLL-FGEHILSIDIDGNMFIWAFKGIEENLA---PVGHVKLDDKFTPTCIMHPDTYL 151 (907)
Q Consensus 77 I~vw~-~~~~~~~~~~h~~~V~~l~~-~g~~l~s~~~dg~v~vWd~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~ 151 (907)
|.+|+ .|+.+.+..--.+.|.++.| +...|+....||.++++|+.... ... .+.........+....+...|
T Consensus 63 I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G-- 139 (410)
T PF04841_consen 63 IQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG-- 139 (410)
T ss_pred EEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC--
Confidence 77776 46666663222288999998 56788999999999999986444 110 011111111111111222233
Q ss_pred CEEEEEecCCcEEEEecCCCe-EEEEEc---CCCC------CEEE-EEEcCCCCEEEEEecCCeEEEEEccCCceEEEEe
Q 002564 152 NKVIVGSQEGSLQLWNISTKK-KLYEFK---GWGS------SISS-CVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFT 220 (907)
Q Consensus 152 ~~l~~~s~dg~i~iwd~~~~~-~~~~~~---~h~~------~I~~-l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~ 220 (907)
+++-..++.+.+.+--... ....+. .... .... ..++.+....+....++.+.+.+-...+. +.
T Consensus 140 --ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~ 214 (410)
T PF04841_consen 140 --IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID 214 (410)
T ss_pred --EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc
Confidence 4444455555544322211 111111 1000 0000 22333433334434444444333221111 11
Q ss_pred ecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCC
Q 002564 221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP 281 (907)
Q Consensus 221 ~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 281 (907)
..+++..|+.||+|+ ++|.-..+|.+.+.+..-.+....+...-......+.|+-+..
T Consensus 215 --~~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 215 --SDGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred --CCCCeEEEEECCCCC-EEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 146899999999999 8888888999999987766666666634345667888876543
No 359
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.88 E-value=0.015 Score=60.33 Aligned_cols=244 Identities=13% Similarity=0.122 Sum_probs=136.7
Q ss_pred CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCccee-------
Q 002564 235 DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL------- 307 (907)
Q Consensus 235 dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~------- 307 (907)
.++ .|+.|+.+| +.+++.........+. +...|..+...++-+.|++-+ |+.+.+++++.-.......
T Consensus 6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGD-RLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCC-EEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 345 788898888 9999983333333332 344499999999888877776 5999999987653322100
Q ss_pred ---EeccCCCCCCeEEE--EecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeec
Q 002564 308 ---RFRSGHSAPPLCIR--FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382 (907)
Q Consensus 308 ---~~~~~h~~~v~~i~--~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (907)
.........+...+ -...+...+.....+.|.+|..........
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~------------------------------- 129 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS------------------------------- 129 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc-------------------------------
Confidence 00112223344433 112333444444455777777654311100
Q ss_pred ccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceee
Q 002564 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (907)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~ 462 (907)
.. ...+. -+..+.+++|. ++.+++|..++ ..+.|+.++.....+
T Consensus 130 ----------------------------~~-~ke~~----lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 130 ----------------------------KL-LKEIS----LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELL 173 (275)
T ss_pred ----------------------------ce-eEEEE----cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEe
Confidence 00 00000 12667788887 77888887555 888899877665544
Q ss_pred eccccc----cccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCcee-eeeecCcceeEEEEeeCCCEEEEEeCCC
Q 002564 463 LDMSER----SNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK-SRWEVGCSLVKIVYHRVNGLLATVADDL 537 (907)
Q Consensus 463 ~~~~~~----~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~i~~~~~s~~~~~la~~~~dg 537 (907)
...... .......++..+... ++.+|++. |..-.+.|....... ..+.-...+..+++. ..+|++.+. +
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~-~ 247 (275)
T PF00780_consen 174 DPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS-N 247 (275)
T ss_pred CccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhEEEEE--CCEEEEECC-C
Confidence 211100 000112233344443 45666643 334444554433222 345555677777774 456666655 5
Q ss_pred eEEEEEcccceeEEEeecC
Q 002564 538 VIRLFDVVALRMVRKFEGH 556 (907)
Q Consensus 538 ~I~v~d~~~~~~~~~~~~h 556 (907)
.|.||++.++++++.+...
T Consensus 248 ~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 248 SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EEEEEECcCCcEEEEEECC
Confidence 5999999999999888754
No 360
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.87 E-value=5.8e-06 Score=87.93 Aligned_cols=202 Identities=15% Similarity=0.168 Sum_probs=138.3
Q ss_pred CceEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCccc-eeeeccccccccCcCCcEEEEEEcCCC-CEEEEEe----cCC
Q 002564 425 TAVKACTISACG--NFAVLGTAGGWIERFNLQSGISR-GSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAG----YHG 496 (907)
Q Consensus 425 ~~v~~~~~s~~g--~~l~~g~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~----~dg 496 (907)
..+.|++..-+. ..+++|..+|.|.+-........ ..+. ++|....++++|.+-. ..||.|- .|.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~t-------p~~ar~Ct~lAwneLDtn~LAagldkhrnds 129 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVT-------PGYARPCTSLAWNELDTNHLAAGLDKHRNDS 129 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceec-------ccccccccccccccccHHHHHhhhhhhcccC
Confidence 456666665544 47899999999999887655443 3333 5788899999999854 4555442 456
Q ss_pred eEEEEECCCC--ceeeeee----cCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECC-CC
Q 002564 497 DIKVWDFKGR--DLKSRWE----VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSE-DG 569 (907)
Q Consensus 497 ~i~iwd~~~~--~~~~~~~----~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fsp-dg 569 (907)
.+.|||+.++ .+..... ......+++|-.+.+++.+|.....+.++|++.. +.+.-.-.+..+..+..+| .+
T Consensus 130 ~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 130 SLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFSP 208 (783)
T ss_pred CccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh-hhhhhhhhhhhcccceecCCCC
Confidence 7999999877 2222221 2245668889999999999999999999998732 1111112334566677888 67
Q ss_pred cEEEEEeCCCcEEEEEcC-C-CceeeEeeeC-----CceEEEEECCCC-ceEEEEEecCCeEEEeecccccccC
Q 002564 570 KWLLSSGMDGSLRIWDVI-L-ARQIDAIHVD-----VSITALSLSPNM-DVLATAHVDQNGVYLWVNRCMFSGD 635 (907)
Q Consensus 570 ~~l~s~s~Dg~I~vwd~~-~-~~~~~~~~~~-----~~v~~l~~spdg-~~lat~~~d~~~i~lW~~~~~~~~~ 635 (907)
.|+++-. ||.|.+||.. . ..++..+... ..+..++|+|.. ..|++...|..+|++++++..-.+.
T Consensus 209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~ 281 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEG 281 (783)
T ss_pred Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcc
Confidence 7888765 9999999932 1 2233333222 238999999954 4678888888899999987655544
No 361
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.032 Score=60.67 Aligned_cols=285 Identities=14% Similarity=0.116 Sum_probs=179.0
Q ss_pred EEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecC-CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEE
Q 002564 163 LQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD-GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA 241 (907)
Q Consensus 163 i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d-g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~ 241 (907)
+.+++..+.+....+..+. ....+...+++..+.+.... ..+...+.. .................++.++++....+
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEE
Confidence 6667766666665555433 56677888888655544332 245554444 22222211111134567888888886777
Q ss_pred EEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCC-CcEEEEEccCCCCCcceeEeccCCCCCCeEE
Q 002564 242 SGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320 (907)
Q Consensus 242 sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i 320 (907)
....++.|.+.|..+.+.......+. ....+++.++++.+..+... +.-.++.++..+. ........-..+ ..+
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~--~~~~~~~vG~~P-~~~ 165 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN--KVTATIPVGNTP-TGV 165 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCC--eEEEEEecCCCc-ceE
Confidence 77778999999988888888877444 67899999999877776653 2334444444433 233332222233 899
Q ss_pred EEecCCCEEEEEe-CCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCC
Q 002564 321 RFYANGRHILSAG-QDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDT 399 (907)
Q Consensus 321 ~~~~~g~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 399 (907)
++.|+|..++.+. .++.+.+.+.......+ -..
T Consensus 166 a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~--------------------------------------------- 199 (381)
T COG3391 166 AVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSV--------------------------------------------- 199 (381)
T ss_pred EECCCCCeEEEEecCCCeEEEEeCCCcceec-ccc---------------------------------------------
Confidence 9999999777665 67888888854332221 000
Q ss_pred ceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCccceeeeccccccccCcCCc
Q 002564 400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG---GWIERFNLQSGISRGSYLDMSERSNYAHNGE 476 (907)
Q Consensus 400 ~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~ 476 (907)
............+.++++|+++.+.... +.+...|..++.....-.. .+.. .
T Consensus 200 ------------------~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~------~~~~-~ 254 (381)
T COG3391 200 ------------------GSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP------VGSG-A 254 (381)
T ss_pred ------------------ccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc------cccC-C
Confidence 0000111445678899999977766554 5899999988877665210 1222 5
Q ss_pred EEEEEEcCCCCEEEEEe-cCCeEEEEECCCCceeeeeecCcc----eeEEEEee
Q 002564 477 VVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVGCS----LVKIVYHR 525 (907)
Q Consensus 477 v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~----i~~~~~s~ 525 (907)
...+.++|+|+.+.+.. ..+.+.+-|..+............ +..+++.+
T Consensus 255 ~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 255 PRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred CCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 67789999999888875 448899999888777776654432 55555554
No 362
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.85 E-value=0.00044 Score=75.01 Aligned_cols=186 Identities=15% Similarity=0.112 Sum_probs=124.6
Q ss_pred CceEEEEEcCCCCEEEEEe---CC-CcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe-cCCe--
Q 002564 425 TAVKACTISACGNFAVLGT---AG-GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGD-- 497 (907)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~---~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~-- 497 (907)
..+..-.|+|++..++.-+ .. ..+.++++.++....... ..+.-..-+|+|||+.|+-+. .||.
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~---------~~g~~~~P~fspDG~~l~f~~~rdg~~~ 263 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN---------FNGNNGAPAFSPDGSKLAFSSSRDGSPD 263 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec---------cCCccCCccCCCCCCEEEEEECCCCCcc
Confidence 4566678899987765442 22 468999999887766553 233445568999998776554 5665
Q ss_pred EEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCC---eEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEE
Q 002564 498 IKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDL---VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS 574 (907)
Q Consensus 498 i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg---~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s 574 (907)
|.+.|+.++...+.....+.-+.-.|+|||+.++..++.+ .|.++|.+..... .+....+.-..-.|||||++|+.
T Consensus 264 iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 264 IYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred EEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccCCCCcCccCCCCCCEEEE
Confidence 5666777777544233334444678999999988876643 5777787766553 33323222226789999999987
Q ss_pred EeC-CCc--EEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecC
Q 002564 575 SGM-DGS--LRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ 620 (907)
Q Consensus 575 ~s~-Dg~--I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~ 620 (907)
.+. +|. |.+.|+.++..++.+........-.|.|+|+.+...+..+
T Consensus 343 ~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 343 ESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred EeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC
Confidence 764 344 7777777776666666555566788899998888776544
No 363
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.72 E-value=0.001 Score=72.20 Aligned_cols=167 Identities=18% Similarity=0.185 Sum_probs=111.3
Q ss_pred CcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEE---ecC-CeEEEEEccCCceEEEEeecCCCCEEEEEEecCC
Q 002564 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVG---CSD-GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG 236 (907)
Q Consensus 161 g~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g---~~d-g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg 236 (907)
..+.+-|.. |...+.+......+..-+|+|+++.++.. ... ..+.++++.+++....... .+.-...+|+|||
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~--~g~~~~P~fspDG 249 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF--NGNNGAPAFSPDG 249 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc--CCccCCccCCCCC
Confidence 345555544 66666666667778888999999876644 222 4699999998887666653 3567788999999
Q ss_pred CCEEEEEeCCCc--EEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEc-CCCcEEEEEccCCCCCcceeEeccCC
Q 002564 237 QPLLASGASSGV--ISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFRSGH 313 (907)
Q Consensus 237 ~~~l~sg~~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~h 313 (907)
+.++++...||. |.+.|+.++.... +. .-.+.-..-.|+|||+.++..+ ..|.-.||.++......+.+.. .
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~---~ 324 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKNLPR-LT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF---S 324 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCccee-cc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec---c
Confidence 977777777775 5556777766333 43 2223333778999999777654 4677788877766544333322 2
Q ss_pred CCCCeEEEEecCCCEEEEEeCC
Q 002564 314 SAPPLCIRFYANGRHILSAGQD 335 (907)
Q Consensus 314 ~~~v~~i~~~~~g~~l~s~~~d 335 (907)
...-..-.|+|||++++..+..
T Consensus 325 ~~~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 325 GGGNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred CCCCcCccCCCCCCEEEEEecc
Confidence 2222267789999999877743
No 364
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.63 E-value=3.3e-05 Score=82.39 Aligned_cols=205 Identities=17% Similarity=0.185 Sum_probs=130.3
Q ss_pred CEEEEEEecCC-CCEEEEEeCCCcEEEEECCCceee-eeeecccccCeEEEEEecC-CCEEEEEc----CCCcEEEEEcc
Q 002564 226 AVTALAFSSDG-QPLLASGASSGVISIWNLEKRRLQ-SVIREAHDNAIISLHFFAN-EPVLMSAS----ADNSIKMWIFD 298 (907)
Q Consensus 226 ~v~~l~fs~dg-~~~l~sg~~dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~~~~-~~~l~s~~----~d~~i~vw~~~ 298 (907)
.+.|+++.-+. +.++++|..+|.|.+-......-. ..+..+|....++++|.+- .+.||.|- .|..+.+||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 45666655443 358999999999999988765433 3344478899999999984 45666653 36789999988
Q ss_pred CCCCCcceeEecc-CCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCcee
Q 002564 299 TTDGDPRLLRFRS-GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVI 377 (907)
Q Consensus 299 ~~~~~~~~~~~~~-~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 377 (907)
..-..+.....+. +......+++|..+.+.+++|...+.+.++|++........
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s------------------------- 192 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS------------------------- 192 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh-------------------------
Confidence 7622222222222 24455668899988889999999999999998632211100
Q ss_pred EeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEeCC-C
Q 002564 378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQ-S 455 (907)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~i~d~~-~ 455 (907)
-....+..+.++| .+++++.-. +|.|.+||.. .
T Consensus 193 --------------------------------------------vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rn 227 (783)
T KOG1008|consen 193 --------------------------------------------VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRN 227 (783)
T ss_pred --------------------------------------------hhhhhcccceecCCCCCceeccc-cCceeeccchhh
Confidence 0013456677788 677776654 9999999942 1
Q ss_pred -CccceeeeccccccccCcCCcEEEEEEcCCC-CEEEEEe-cCCeEEEEECC
Q 002564 456 -GISRGSYLDMSERSNYAHNGEVVGVACDSTN-TLMISAG-YHGDIKVWDFK 504 (907)
Q Consensus 456 -~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~-~dg~i~iwd~~ 504 (907)
..+...... ........+..++|.|.. ..+++.. ..++|+.+|+.
T Consensus 228 ienpl~~i~~----~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 228 IENPLQIILR----NENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred hccHHHHHhh----CCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 111111110 001223358999999954 3445554 55789999875
No 365
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.63 E-value=0.0026 Score=73.03 Aligned_cols=191 Identities=18% Similarity=0.196 Sum_probs=122.8
Q ss_pred CCcceEEEEEe--cCeEEEEEcCeEEEEeCCe-e-E---------EEEcccc-cceEEEEe--eCCEEEEE-ecCCcEEE
Q 002564 55 LPKKIRALASY--RDYTFAAYGNHIAVVKRAH-Q-V---------ATWSRHS-AKVNLLLL--FGEHILSI-DIDGNMFI 117 (907)
Q Consensus 55 ~~~~I~~la~~--~~~~~~a~g~~I~vw~~~~-~-~---------~~~~~h~-~~V~~l~~--~g~~l~s~-~~dg~v~v 117 (907)
....+.+|++. .|..|++-|+.|-|++... . + .+..|.. .+-..+.- +.+.|+.- ...+.|.-
T Consensus 429 ~~~~n~~Lavg~k~DrSfVvRg~~igVFk~~~~~~l~f~t~i~~i~~~~g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~ 508 (794)
T PF08553_consen 429 DGEKNSSLAVGYKNDRSFVVRGSKIGVFKNTDDDGLEFSTAISNISTPKGKNFTPKKAMLHDQDRNMILLDPNNPNKLYK 508 (794)
T ss_pred CCCccceeEeeeccCceEEECCCcEeEEECCCCCceeeeEEecccccCCCcccCcchhhhhccccceEeecCCCCCceEE
Confidence 35567778877 5899999999999997541 1 1 1111110 01111111 12333332 34567888
Q ss_pred EecCCCCccccceeeEecCCCcccEEEEcCCCC-----CCEEEEEecCCcEEEEecCCC--eEEEE-Ec--CCCCCEEEE
Q 002564 118 WAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTY-----LNKVIVGSQEGSLQLWNISTK--KKLYE-FK--GWGSSISSC 187 (907)
Q Consensus 118 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-----~~~l~~~s~dg~i~iwd~~~~--~~~~~-~~--~h~~~I~~l 187 (907)
-|++.|+. +.....+.... ..-+.|+.. ....++|-.++.+..||.+-. +++.. .+ ......+|+
T Consensus 509 mDLe~GKV----V~eW~~~~~~~-v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~ 583 (794)
T PF08553_consen 509 MDLERGKV----VEEWKVHDDIP-VVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF 583 (794)
T ss_pred EecCCCcE----EEEeecCCCcc-eeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE
Confidence 89999998 88888776542 333445421 134677878888999998743 33321 11 235667888
Q ss_pred EEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 002564 188 VSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL 254 (907)
Q Consensus 188 ~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~ 254 (907)
+-+.+| +||+|+.+|.||+||- .|+.-.+...+-..+|..+..+.||+++|||| +..|.+++.
T Consensus 584 aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t 646 (794)
T PF08553_consen 584 ATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT 646 (794)
T ss_pred EecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence 888877 7999999999999994 45544444444468999999999999666665 467888775
No 366
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.63 E-value=0.07 Score=59.21 Aligned_cols=116 Identities=15% Similarity=0.190 Sum_probs=70.5
Q ss_pred EEEEEEcCCCCEEEEEe-cC----CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeC----------CCc
Q 002564 184 ISSCVSSPALDVVAVGC-SD----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS----------SGV 248 (907)
Q Consensus 184 I~~l~~sp~~~~la~g~-~d----g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~----------dg~ 248 (907)
+....+||+++++|.+- .. ..++++|+.+|+.+...... .....+.|.+|++.++.+... ...
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34678999999998763 33 45999999999876543222 122349999998845555432 224
Q ss_pred EEEEECCCceee--eeeecccccC-eEEEEEecCCCEEEEEcC-CCc-EEEEEccCCC
Q 002564 249 ISIWNLEKRRLQ--SVIREAHDNA-IISLHFFANEPVLMSASA-DNS-IKMWIFDTTD 301 (907)
Q Consensus 249 I~iwd~~~~~~~--~~~~~~h~~~-V~~l~~~~~~~~l~s~~~-d~~-i~vw~~~~~~ 301 (907)
|..|.+.+.... ..+....... ...+..++++++++.... ... -.+|-++...
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 788888777433 3333122222 678899999998775433 223 3455444443
No 367
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00024 Score=76.11 Aligned_cols=94 Identities=18% Similarity=0.275 Sum_probs=83.4
Q ss_pred cCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCee-eEEECCCCcEEEEEeCCCcEEEEEcCCCcee
Q 002564 514 VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRIT-DFCFSEDGKWLLSSGMDGSLRIWDVILARQI 592 (907)
Q Consensus 514 ~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~-~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~ 592 (907)
....+..+.|+|.-.++|.+..+|.|.+..++ ++.+.++.-|...++ +++|.|||+.||.|-.||+|++-|+.+|..+
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 44678889999999999999999999999988 888888887877777 9999999999999999999999999999988
Q ss_pred eE--eeeCCceEEEEECC
Q 002564 593 DA--IHVDVSITALSLSP 608 (907)
Q Consensus 593 ~~--~~~~~~v~~l~~sp 608 (907)
.. +....+|.++.|+|
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 77 55567799999974
No 368
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.61 E-value=0.057 Score=59.92 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=56.7
Q ss_pred EEEEEEecCCCCEEEEEeCCC----cEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCC-----------c
Q 002564 227 VTALAFSSDGQPLLASGASSG----VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN-----------S 291 (907)
Q Consensus 227 v~~l~fs~dg~~~l~sg~~dg----~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~-----------~ 291 (907)
+...+++|||+.++++-+..| .|+++|+++++.+...- .......+.|.+++..|+....+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 446788999994444444444 59999999997765432 111223499999988776665433 2
Q ss_pred EEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEE
Q 002564 292 IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA 332 (907)
Q Consensus 292 i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~ 332 (907)
|+.|.+.+......++.....+......+..++|+++++..
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~ 244 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFIS 244 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEE
Confidence 45554443322212222211111113456666677666543
No 369
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.57 E-value=0.039 Score=57.30 Aligned_cols=195 Identities=9% Similarity=0.069 Sum_probs=115.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeecccc------ccccCcCCcEEEEE--EcCCCCEEEEEecCC
Q 002564 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSE------RSNYAHNGEVVGVA--CDSTNTLMISAGYHG 496 (907)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~~h~~~v~~l~--~s~~~~~l~s~~~dg 496 (907)
..|..+.+.++-+.+++-+ ||.+++|++..-........... .........+...+ -...+...+......
T Consensus 36 ~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk 114 (275)
T PF00780_consen 36 SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK 114 (275)
T ss_pred ceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC
Confidence 3488888888777766654 49999999876554442110000 00012233455555 222333334444446
Q ss_pred eEEEEECCCC-----ceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecC------------CCC
Q 002564 497 DIKVWDFKGR-----DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH------------TDR 559 (907)
Q Consensus 497 ~i~iwd~~~~-----~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h------------~~~ 559 (907)
.|.+|..... +..+.+.....+..++|. ++.+++|..+ ...+.|+.++.....+... ..+
T Consensus 115 ~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~ 191 (275)
T PF00780_consen 115 KILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKP 191 (275)
T ss_pred EEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCc
Confidence 8888877653 566778888999999998 6778888754 4788899877654433211 123
Q ss_pred eeeEEECCCCcEEEEEeCCCcEEEEEcCCCceee--EeeeCCceEEEEECCCCceEEEEEecCCeEEEeecccc
Q 002564 560 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID--AIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCM 631 (907)
Q Consensus 560 I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~--~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~~ 631 (907)
+..+.. +++.+|++- |..-.+-|. .|+..+ .+.-...+.++++ ...||++.+.+ +|.||++...
T Consensus 192 ~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~~--~iEV~~~~~~ 257 (275)
T PF00780_consen 192 LGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSSN--SIEVRSLETG 257 (275)
T ss_pred eEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEEcCCchhEEEE--ECCEEEEECCC--EEEEEECcCC
Confidence 333333 345677653 333333343 455443 4555666777777 44688887775 4999997543
No 370
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0004 Score=74.56 Aligned_cols=95 Identities=23% Similarity=0.297 Sum_probs=80.4
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEE-EEEEecCCCCEEEEEeCCCcEEEEECCCcee
Q 002564 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVT-ALAFSSDGQPLLASGASSGVISIWNLEKRRL 259 (907)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~-~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~ 259 (907)
...|.-+.|+|.-+++|++..+|.|.++.+. .+.+.++..+ ...++ +++|.|||+ ++|+|-.||+|++.|.+++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p-~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP-GENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC-CCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence 4568889999999999999999999999988 7888888855 45565 999999999 999999999999999999987
Q ss_pred eeeeecccccCeEEEEEec
Q 002564 260 QSVIREAHDNAIISLHFFA 278 (907)
Q Consensus 260 ~~~~~~~h~~~V~~l~~~~ 278 (907)
+......-...|.++.|.+
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 7774434566788888863
No 371
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.49 E-value=0.085 Score=56.68 Aligned_cols=90 Identities=16% Similarity=0.210 Sum_probs=60.2
Q ss_pred EEEEcCCCCEEEEEecCCeEEE---EEcc-CC----ceEEEEe----ecCCCCEEEEEEec-----------CCCCEEEE
Q 002564 186 SCVSSPALDVVAVGCSDGKIHV---HNVR-YD----EELVTFT----HSMRGAVTALAFSS-----------DGQPLLAS 242 (907)
Q Consensus 186 ~l~~sp~~~~la~g~~dg~I~i---wd~~-~~----~~~~~~~----~~~~~~v~~l~fs~-----------dg~~~l~s 242 (907)
.++.+|++++||.|..+..+.+ |+.. .+ ....... ......|+++.+-| |.. .+++
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~-~I~V 84 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWT-CIAV 84 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcE-EEEE
Confidence 4678999999999988776665 5331 11 1111111 11124677777654 344 8999
Q ss_pred EeCCCcEEEEECCCceeeeeeecccccCeEEEEEec
Q 002564 243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA 278 (907)
Q Consensus 243 g~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~ 278 (907)
|..+|.|++|.. +|.++..-. -|..+|..+.+..
T Consensus 85 G~ssG~vrfyte-~G~LL~~Q~-~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 85 GTSSGYVRFYTE-NGVLLLSQL-LHEEPVLKIKCRS 118 (415)
T ss_pred EecccEEEEEec-cchHHHHHh-cCccceEEEEecc
Confidence 999999999995 666655554 6888898888754
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.45 E-value=0.025 Score=58.53 Aligned_cols=238 Identities=16% Similarity=0.126 Sum_probs=132.1
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeE
Q 002564 229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLR 308 (907)
Q Consensus 229 ~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~ 308 (907)
+..|.++...++.+--..+.|.-|+..+++..... +.+.+.++.....+..|+++. ..+.+++.+..... ..+.
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~-t~~~ 102 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKI-TLLA 102 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEc--cccEEEeccCCcee-EEec
Confidence 34566777645666667889999998866443322 334445555555555666664 34566666332210 1111
Q ss_pred e-ccCC-CCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeeccccc
Q 002564 309 F-RSGH-SAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRE 386 (907)
Q Consensus 309 ~-~~~h-~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (907)
. ..+. ....+.+...|+|.+-++.... ++ .+...
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-----~~--~~~~~------------------------------------- 138 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGY-----FD--LGKSE------------------------------------- 138 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCc-----cc--cCccc-------------------------------------
Confidence 1 1121 2456677778887655543321 11 00000
Q ss_pred ccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCC-CcEEEEeCCC--Cccceeee
Q 002564 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG-GWIERFNLQS--GISRGSYL 463 (907)
Q Consensus 387 ~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-g~i~i~d~~~--~~~~~~~~ 463 (907)
....+ .+|.+... ....+....+-.....++||||++.+.+.... +.|+.|++.. +.....
T Consensus 139 ---------~~~~G--~lyr~~p~---g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~-- 202 (307)
T COG3386 139 ---------ERPTG--SLYRVDPD---GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR-- 202 (307)
T ss_pred ---------cCCcc--eEEEEcCC---CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc--
Confidence 00011 22222210 11111111223456789999999888777654 8899988763 211111
Q ss_pred ccccccccCcCCcEEEEEEcCCCCEEEEEecCC-eEEEEECCCCceeeeeecC-cceeEEEEee-CCCEEEEEe
Q 002564 464 DMSERSNYAHNGEVVGVACDSTNTLMISAGYHG-DIKVWDFKGRDLKSRWEVG-CSLVKIVYHR-VNGLLATVA 534 (907)
Q Consensus 464 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~-~~i~~~~~s~-~~~~la~~~ 534 (907)
..........+..-+++.+.+|.+.+++..+| .|.+|+.. ++++..+..+ ..+++++|-- +.+.|.+.+
T Consensus 203 -~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 203 -RGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred -ceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 00001123557788899999998886555554 99999988 9999998888 7788888853 344444443
No 373
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.42 E-value=0.097 Score=55.23 Aligned_cols=184 Identities=15% Similarity=0.202 Sum_probs=88.2
Q ss_pred EEEEcCCCCEEEEEe--C----CCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEec--------
Q 002564 429 ACTISACGNFAVLGT--A----GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGY-------- 494 (907)
Q Consensus 429 ~~~~s~~g~~l~~g~--~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-------- 494 (907)
.+..-|+|+.++++- . -|.+.++|-.+.......... .+....-..+.+.|..+.++|+..
T Consensus 134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~-----~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~ 208 (461)
T PF05694_consen 134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKD-----RGPQPFGYDFWYQPRHNVMISSEWGAPSMFEK 208 (461)
T ss_dssp EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB------TT------EEEETTTTEEEE-B---HHHHTT
T ss_pred eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccC-----CCCCCCCCCeEEcCCCCEEEEeccCChhhccc
Confidence 344456676666542 2 246777887776666665421 011233456677888888887743
Q ss_pred ------------CCeEEEEECCCCceeeeeecC---cceeEEEEeeC--CC--EEEEEeCCCeEEEEEcccce----eEE
Q 002564 495 ------------HGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRV--NG--LLATVADDLVIRLFDVVALR----MVR 551 (907)
Q Consensus 495 ------------dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~~--~~--~la~~~~dg~I~v~d~~~~~----~~~ 551 (907)
..++.+||+.+.+.++++... .....+.|..+ .. ++.++......++|..+.++ .+.
T Consensus 209 Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi 288 (461)
T PF05694_consen 209 GFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVI 288 (461)
T ss_dssp ---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEE
T ss_pred CCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEE
Confidence 357999999999999999886 34556666554 33 33333333333344333332 122
Q ss_pred Eeec-----C------------CCCeeeEEECCCCcEEEEEe-CCCcEEEEEcCCC---ceeeEeeeCC-----------
Q 002564 552 KFEG-----H------------TDRITDFCFSEDGKWLLSSG-MDGSLRIWDVILA---RQIDAIHVDV----------- 599 (907)
Q Consensus 552 ~~~~-----h------------~~~I~~l~fspdg~~l~s~s-~Dg~I~vwd~~~~---~~~~~~~~~~----------- 599 (907)
.+.. - ..-|++|..|.|.++|..+. .+|.||.||+..- +++..+....
T Consensus 289 ~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~ 368 (461)
T PF05694_consen 289 DIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVK 368 (461)
T ss_dssp EE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-
T ss_pred ECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccc
Confidence 2221 0 24489999999999997555 7899999999763 3444433221
Q ss_pred ------ceEEEEECCCCceEEEEE
Q 002564 600 ------SITALSLSPNMDVLATAH 617 (907)
Q Consensus 600 ------~v~~l~~spdg~~lat~~ 617 (907)
...-+..|-||+.|..+.
T Consensus 369 g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 369 GKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -----S----EEE-TTSSEEEEE-
T ss_pred ccccCCCCCeEEEccCCeEEEEEe
Confidence 235567777887777654
No 374
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.30 E-value=0.09 Score=51.47 Aligned_cols=274 Identities=12% Similarity=0.071 Sum_probs=151.1
Q ss_pred CceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCc-EEEEECCCceeeeeeecccccC--eEEEEEecCCCEEEEEcCC
Q 002564 213 DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGV-ISIWNLEKRRLQSVIREAHDNA--IISLHFFANEPVLMSASAD 289 (907)
Q Consensus 213 ~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~-I~iwd~~~~~~~~~~~~~h~~~--V~~l~~~~~~~~l~s~~~d 289 (907)
|+.+...... ..-..++|+|....-++.+-.-|+ ..++|....+...++. ...+. --.-.|+|||.+|...-.|
T Consensus 58 Gk~v~~~~lp--aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-s~~~RHfyGHGvfs~dG~~LYATEnd 134 (366)
T COG3490 58 GKIVFATALP--ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-SQEGRHFYGHGVFSPDGRLLYATEND 134 (366)
T ss_pred Cceeeeeecc--cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-cccCceeecccccCCCCcEEEeecCC
Confidence 4555444433 456678888887656666665554 5688988887666654 11111 1234689999988876543
Q ss_pred -----CcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEE-EceecccceeechhhhhHHHhh
Q 002564 290 -----NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF-SVIQDQQSRELSQRHVAKRARK 363 (907)
Q Consensus 290 -----~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~ 363 (907)
|.|-+||.+.. ...+..+..|.-.+..+.+.+||+.++.+.. -|..- +.-..+.+..
T Consensus 135 fd~~rGViGvYd~r~~---fqrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNld------------ 197 (366)
T COG3490 135 FDPNRGVIGVYDAREG---FQRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLD------------ 197 (366)
T ss_pred CCCCCceEEEEecccc---cceecccccCCcCcceeEEecCCcEEEEeCC--ceecccccCccccchh------------
Confidence 78999988732 3455667788888999999999999887643 23332 1111000000
Q ss_pred ccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEe
Q 002564 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (907)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 443 (907)
.-...+.+.|..++.+.++...+...+...+..+++.+||...+-+-
T Consensus 198 ---------------------------------sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 198 ---------------------------------SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred ---------------------------------hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 00122223332233322222222233456788899998887666543
Q ss_pred CCCcE----EEE-eCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEe-cCCeEEEEECCCCceeeeeecCcc
Q 002564 444 AGGWI----ERF-NLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG-YHGDIKVWDFKGRDLKSRWEVGCS 517 (907)
Q Consensus 444 ~dg~i----~i~-d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~ 517 (907)
..|.- -+. -...++....+. .+......-...|-+++.+.+..+++..+ ..+...+||..++..+..-....
T Consensus 245 y~G~~~d~ppLvg~~~~g~~l~~~~-~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d- 322 (366)
T COG3490 245 YRGPRNDLPPLVGHFRKGEPLEFLD-LPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD- 322 (366)
T ss_pred eeCCCccCCcceeeccCCCcCcccC-CCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc-
Confidence 32210 000 111222222221 11111112334577888876555555444 56678899999998876544331
Q ss_pred eeEEEEeeCCCEEEEEeCCCeEEEEE
Q 002564 518 LVKIVYHRVNGLLATVADDLVIRLFD 543 (907)
Q Consensus 518 i~~~~~s~~~~~la~~~~dg~I~v~d 543 (907)
+.-.-+...-+++.+.+|.+..+.
T Consensus 323 --aaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 323 --AAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred --cccceeccCceEEecCCceEEecc
Confidence 112223344466666778887763
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.0098 Score=62.88 Aligned_cols=142 Identities=17% Similarity=0.211 Sum_probs=101.7
Q ss_pred CEEE-EEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCC-------EEEEEecCCeEEEEEccCCce-EEEEeec
Q 002564 152 NKVI-VGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD-------VVAVGCSDGKIHVHNVRYDEE-LVTFTHS 222 (907)
Q Consensus 152 ~~l~-~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~-------~la~g~~dg~I~iwd~~~~~~-~~~~~~~ 222 (907)
+.|+ .+.....++-.|++.|+.+.+.+-+.. |+-+.+.|+.+ .-++|-.|..|.-||.+-... .......
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 3444 455566788999999999999998766 88888888754 234677888999999873222 2222221
Q ss_pred C----CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 002564 223 M----RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298 (907)
Q Consensus 223 ~----~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~ 298 (907)
+ .....|.+-..+| ++|+|+.+|.|++||- .++...+...+-..+|..+..+.+|++++..+ +..+.+-+..
T Consensus 425 kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 1 2356677666666 6999999999999997 55555554448899999999999999888776 4555555443
No 376
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.26 E-value=0.00081 Score=44.84 Aligned_cols=39 Identities=38% Similarity=0.841 Sum_probs=34.9
Q ss_pred ceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEE
Q 002564 547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585 (907)
Q Consensus 547 ~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd 585 (907)
+++...+.+|...|.++.|+++++++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355677788999999999999999999999999999996
No 377
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.25 E-value=0.12 Score=53.57 Aligned_cols=206 Identities=13% Similarity=0.076 Sum_probs=120.2
Q ss_pred CCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcC-----CCCCEEE
Q 002564 112 DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG-----WGSSISS 186 (907)
Q Consensus 112 dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----h~~~I~~ 186 (907)
.+.|.-|+..+++. ..+..+........+...+ .++++..| +.+++.+++..+..+.. .....+.
T Consensus 46 ~~~i~r~~~~~g~~-----~~~~~p~~~~~~~~~d~~g----~Lv~~~~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND 115 (307)
T COG3386 46 GGRIHRLDPETGKK-----RVFPSPGGFSSGALIDAGG----RLIACEHG-VRLLDPDTGGKITLLAEPEDGLPLNRPND 115 (307)
T ss_pred CCeEEEecCCcCce-----EEEECCCCcccceeecCCC----eEEEEccc-cEEEeccCCceeEEeccccCCCCcCCCCc
Confidence 55677777765544 4455555555555566665 44444555 77888776666433321 1245567
Q ss_pred EEEcCCCCEEEEEec---------CCeEEEEEcc-CCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 002564 187 CVSSPALDVVAVGCS---------DGKIHVHNVR-YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK 256 (907)
Q Consensus 187 l~~sp~~~~la~g~~---------dg~I~iwd~~-~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~ 256 (907)
+...|+|.+.+.... ...-.+|-+. .+..+..+..+ -..-+.|+||||++.+.++=+..+.|.-|++..
T Consensus 116 ~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~-~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 116 GVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDD-LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred eeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCc-EEecCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence 788899887665433 0112455554 44444444332 345678999999984555555668898888762
Q ss_pred --c----eeeeeeecccccCeEEEEEecCCCEEEEEcCCC-cEEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCE
Q 002564 257 --R----RLQSVIREAHDNAIISLHFFANEPVLMSASADN-SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRH 328 (907)
Q Consensus 257 --~----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~-~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~ 328 (907)
+ +..........+..-.++...+|.+-+++..+| .|..|+.+ + +++....-....+++++|-. +.+.
T Consensus 195 ~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G----~l~~~i~lP~~~~t~~~FgG~~~~~ 269 (307)
T COG3386 195 ATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G----KLLGEIKLPVKRPTNPAFGGPDLNT 269 (307)
T ss_pred ccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C----cEEEEEECCCCCCccceEeCCCcCE
Confidence 2 111111112345566777777887665444443 78888654 2 45555555557788888875 4455
Q ss_pred EEEEe
Q 002564 329 ILSAG 333 (907)
Q Consensus 329 l~s~~ 333 (907)
|+..+
T Consensus 270 L~iTs 274 (307)
T COG3386 270 LYITS 274 (307)
T ss_pred EEEEe
Confidence 55443
No 378
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.24 E-value=0.24 Score=52.67 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=46.0
Q ss_pred eeeecCcceeEEEEeeC-------CCEEEEEeCCCeEEEEEcccceeEE---E-eecCCCCeeeEEECCCCcEEEEEeCC
Q 002564 510 SRWEVGCSLVKIVYHRV-------NGLLATVADDLVIRLFDVVALRMVR---K-FEGHTDRITDFCFSEDGKWLLSSGMD 578 (907)
Q Consensus 510 ~~~~~~~~i~~~~~s~~-------~~~la~~~~dg~I~v~d~~~~~~~~---~-~~~h~~~I~~l~fspdg~~l~s~s~D 578 (907)
..+..+..+..+.|.+. |.++++....+.|....+.....+. . +.....++.++++.|||.+.++.+.+
T Consensus 247 ~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~ 326 (331)
T PF07995_consen 247 FAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSD 326 (331)
T ss_dssp EEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TT
T ss_pred eeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCC
Confidence 33444566677777643 4566666667788888887553222 2 22344589999999999998888888
Q ss_pred CcEE
Q 002564 579 GSLR 582 (907)
Q Consensus 579 g~I~ 582 (907)
|.|.
T Consensus 327 G~iy 330 (331)
T PF07995_consen 327 GKIY 330 (331)
T ss_dssp TTEE
T ss_pred CeEe
Confidence 8763
No 379
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.23 E-value=0.016 Score=48.55 Aligned_cols=98 Identities=23% Similarity=0.372 Sum_probs=71.3
Q ss_pred EcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCC
Q 002564 145 MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMR 224 (907)
Q Consensus 145 ~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~ 224 (907)
+.-++. +.|++|+.|..|++|+ ....+.++.. .+.|++++-... ..++.+..+|+|-+|+- ...+...+. +
T Consensus 10 ~d~dg~-~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKS--K 80 (111)
T PF14783_consen 10 FDGDGE-NELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKS--K 80 (111)
T ss_pred cCCCCc-ceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeecc--C
Confidence 344444 7899999999999997 5578888887 677888887776 56899999999999975 233444433 3
Q ss_pred CCEEEEEEe---cCCCCEEEEEeCCCcEEE
Q 002564 225 GAVTALAFS---SDGQPLLASGASSGVISI 251 (907)
Q Consensus 225 ~~v~~l~fs---~dg~~~l~sg~~dg~I~i 251 (907)
..++++.+. .||..-|++|-.+|.|-+
T Consensus 81 ~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 81 NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 446666654 355567889988888743
No 380
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.22 E-value=0.76 Score=54.13 Aligned_cols=110 Identities=13% Similarity=0.146 Sum_probs=75.6
Q ss_pred CEEEEEecCCcEEEEecCCCeEEEEEcCCCCC--------EEEEEEc----------------CCCCEEEEEecCCeEEE
Q 002564 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSS--------ISSCVSS----------------PALDVVAVGCSDGKIHV 207 (907)
Q Consensus 152 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~--------I~~l~~s----------------p~~~~la~g~~dg~I~i 207 (907)
+.+++++.++.|.-.|..+|+.+..+...... ...+++. ..+..|+.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 57899999999999999999999888643211 1112221 13457888999999999
Q ss_pred EEccCCceEEEEeecCCCCEE-------------EEEEec---CCCCEEEEEeC----------CCcEEEEECCCceeee
Q 002564 208 HNVRYDEELVTFTHSMRGAVT-------------ALAFSS---DGQPLLASGAS----------SGVISIWNLEKRRLQS 261 (907)
Q Consensus 208 wd~~~~~~~~~~~~~~~~~v~-------------~l~fs~---dg~~~l~sg~~----------dg~I~iwd~~~~~~~~ 261 (907)
.|.++|+.+..+... +.|. .+.-.| ++ .+++|+. +|.|+-+|.++|+.+-
T Consensus 275 LDA~TGk~~W~fg~~--G~vdl~~~~g~~~~g~~~~ts~P~V~~g--~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 275 LDADTGKLCEDFGNN--GTVDLTAGMGTTPPGYYYPTSPPLVAGT--TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EECCCCCEEEEecCC--CceeeecccCcCCCcccccccCCEEECC--EEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 999999998876432 2110 011111 33 4555642 6889999999999988
Q ss_pred eeec
Q 002564 262 VIRE 265 (907)
Q Consensus 262 ~~~~ 265 (907)
.+..
T Consensus 351 ~~~~ 354 (764)
T TIGR03074 351 AWDP 354 (764)
T ss_pred EEec
Confidence 8763
No 381
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.19 E-value=0.027 Score=47.27 Aligned_cols=101 Identities=22% Similarity=0.307 Sum_probs=70.9
Q ss_pred EEEEEEe---cCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC
Q 002564 227 VTALAFS---SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (907)
Q Consensus 227 v~~l~fs---~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 303 (907)
|++|++. .||..-|++|+.|..|++|+- ...+..+. -...|+++.-... ..++.+-.+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~--e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~----- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT--ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS----- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe--cccceEEEEEcCC-CEEEEEecCCEEEEEeCc-----
Confidence 5666654 466678999999999999984 45666665 4567888888776 478899999999999532
Q ss_pred cceeEeccCCCCCCeEEEEec-C--C-CEEEEEeCCCCEE
Q 002564 304 PRLLRFRSGHSAPPLCIRFYA-N--G-RHILSAGQDRAFR 339 (907)
Q Consensus 304 ~~~~~~~~~h~~~v~~i~~~~-~--g-~~l~s~~~dg~i~ 339 (907)
.++.+.... ..+.++.+.. + | ..|++|-.+|.|-
T Consensus 72 ~RlWRiKSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 QRLWRIKSK--NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ceeeeeccC--CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 134443333 3477777765 2 2 3688888888764
No 382
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=97.18 E-value=0.65 Score=54.00 Aligned_cols=129 Identities=18% Similarity=0.203 Sum_probs=72.3
Q ss_pred EEEEEecCCeEEEEEccCCceEEEEee--cCCCCEEEEEEecCC-----CCEEEEEeCCCcEEEEECCCceeeeeee-cc
Q 002564 195 VVAVGCSDGKIHVHNVRYDEELVTFTH--SMRGAVTALAFSSDG-----QPLLASGASSGVISIWNLEKRRLQSVIR-EA 266 (907)
Q Consensus 195 ~la~g~~dg~I~iwd~~~~~~~~~~~~--~~~~~v~~l~fs~dg-----~~~l~sg~~dg~I~iwd~~~~~~~~~~~-~~ 266 (907)
.++++..+|.+.-+.......+..+.. .-...|.|+++.++. ..+++.++.|+++++..+.....+..+. .+
T Consensus 551 qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~ 630 (1205)
T KOG1898|consen 551 QIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQG 630 (1205)
T ss_pred EEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccc
Confidence 455555556655555543333444431 124578899998875 2479999999999999988665555543 23
Q ss_pred cccCeEEEEEec---CC------CEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEe
Q 002564 267 HDNAIISLHFFA---NE------PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323 (907)
Q Consensus 267 h~~~V~~l~~~~---~~------~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~ 323 (907)
-..++.++.+-+ ++ -+|.+|-.+|.+.-..++.-.+...-.+++.--..+|.-..++
T Consensus 631 l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id~v~G~l~d~rtR~lG~~pvkLf~~~ 696 (1205)
T KOG1898|consen 631 LSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVIDTVTGQLLDIRTRFLGLRPVKLFPIS 696 (1205)
T ss_pred cCCCccceEEEEecccCCccceeEEEEecccccEEEEEEecccccceeeeheeeeccccceEEEEe
Confidence 445555555543 22 1555666666665555555444332333332233344444333
No 383
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.12 E-value=0.074 Score=52.62 Aligned_cols=121 Identities=11% Similarity=0.132 Sum_probs=88.2
Q ss_pred CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC
Q 002564 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (907)
Q Consensus 224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 303 (907)
...+.+++|+|+.+ .|++-.....-.||=..+|..+.++...--...-++.+..++++.++--.++.+.++.++..+..
T Consensus 85 ~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 85 TANVSSLTYNPDTR-TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred cccccceeeCCCcc-eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 34599999999999 45555556666677667899998887444555678899989988888888999999888766432
Q ss_pred cce------eEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEcee
Q 002564 304 PRL------LRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345 (907)
Q Consensus 304 ~~~------~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~ 345 (907)
... +..........-.++|.|..+.|+.+-.-.-+.+|.+..
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 111 111112255778999999888999988888888888763
No 384
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.12 E-value=0.057 Score=61.61 Aligned_cols=185 Identities=14% Similarity=0.178 Sum_probs=105.2
Q ss_pred cccEEEEcCCCCCCEEEEEe------cCC--cEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecC--------
Q 002564 139 FTPTCIMHPDTYLNKVIVGS------QEG--SLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD-------- 202 (907)
Q Consensus 139 ~~~~~~~~p~~~~~~l~~~s------~dg--~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d-------- 202 (907)
......++|++ +.++... .++ .|.+++. .+.......+ ...+.-.|+|+|+.|++....
T Consensus 351 ~vsspaiSpdG--~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 351 NITSAALSRSG--RQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred CcccceECCCC--CEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence 45677899999 6666554 233 4555564 3333222333 347888999998877776532
Q ss_pred ----CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEE---EECCCceeeee-----eecccccC
Q 002564 203 ----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI---WNLEKRRLQSV-----IREAHDNA 270 (907)
Q Consensus 203 ----g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~i---wd~~~~~~~~~-----~~~~h~~~ 270 (907)
+.+.+.++..++... ...+.|..+.|||||..++++. +|.|.+ -....|. ... +..+-...
T Consensus 426 ~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-eeecccEEeecccCCc
Confidence 233333443333222 1246799999999999544444 477777 4444453 111 22123344
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEE
Q 002564 271 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR 339 (907)
Q Consensus 271 V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~ 339 (907)
+.++.|.+++.++ ++..++...+|.+.........+ .-.....++..++-+++ .++....+|.+.
T Consensus 499 ~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccceEecCCEEE-EEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 6889999999854 55555556677665543322221 11123566777776653 455656666433
No 385
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.08 E-value=0.052 Score=61.88 Aligned_cols=176 Identities=14% Similarity=0.084 Sum_probs=96.7
Q ss_pred CCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe------cCCeEEEEEccCCceEEEEeecCCCCEEEEEEe
Q 002564 160 EGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGC------SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFS 233 (907)
Q Consensus 160 dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~------~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs 233 (907)
+|.+.-.+-..-..+.-..+....+...+++|+|+.+|... .|+.-.||-...+.....+... ...+.-.|+
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--~~~t~PsWs 405 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--HSLTRPSWS 405 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--CCCCCceEC
Confidence 66555443222222222223334678999999999887665 2443344433333333444333 348899999
Q ss_pred cCCCCEEEEEeCC------------CcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccC-C
Q 002564 234 SDGQPLLASGASS------------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT-T 300 (907)
Q Consensus 234 ~dg~~~l~sg~~d------------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~-~ 300 (907)
|||+ .+++.... +.+.+.++..+.... ...+.|..+.|+|||..++... ++.|.+=-+.. .
T Consensus 406 pDG~-~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~ 479 (591)
T PRK13616 406 LDAD-AVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTE 479 (591)
T ss_pred CCCC-ceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCC
Confidence 9987 44444321 233333444333322 1346799999999999888766 46665532222 3
Q ss_pred CCCccee--Eec-cCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEce
Q 002564 301 DGDPRLL--RFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (907)
Q Consensus 301 ~~~~~~~--~~~-~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~ 344 (907)
.+..++. +.+ .+-...+.++.|.+++.+ +.+..++.-.+|.+.
T Consensus 480 ~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 480 DGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVN 525 (591)
T ss_pred CCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEEe
Confidence 3322221 111 223344688999998874 455555544555543
No 386
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.07 E-value=0.34 Score=48.17 Aligned_cols=183 Identities=12% Similarity=0.053 Sum_probs=122.6
Q ss_pred CceEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564 425 TAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (907)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 502 (907)
.....+.+..+|.++-+.+.-| .|+.+|+.+|+....... ....--.+++...+ +...-.-.++...+||
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l-------~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd 116 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL-------PPRYFGEGITILGD-KLYQLTWKEGTGFVYD 116 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE--------TTT--EEEEEEETT-EEEEEESSSSEEEEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC-------CccccceeEEEECC-EEEEEEecCCeEEEEc
Confidence 3455677777777777776666 899999999988766542 22233345555533 3444455789999999
Q ss_pred CCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecC-----CCCeeeEEECCCCcEEEEEeC
Q 002564 503 FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH-----TDRITDFCFSEDGKWLLSSGM 577 (907)
Q Consensus 503 ~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h-----~~~I~~l~fspdg~~l~s~s~ 577 (907)
..+.+.+.++.....-..++ .|++.|+.......++++|..+.+..+++.-. -..++.+.+- +|...|=.=.
T Consensus 117 ~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~ 193 (264)
T PF05096_consen 117 PNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQ 193 (264)
T ss_dssp TTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETT
T ss_pred cccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCC
Confidence 99999999998887777777 56788888888889999999988877776532 2346667775 6777776666
Q ss_pred CCcEEEEEcCCCceeeEeee----------------CCceEEEEECCCCceEEEEEe
Q 002564 578 DGSLRIWDVILARQIDAIHV----------------DVSITALSLSPNMDVLATAHV 618 (907)
Q Consensus 578 Dg~I~vwd~~~~~~~~~~~~----------------~~~v~~l~~spdg~~lat~~~ 618 (907)
...|..-|..+|+++..+.. ..-...+++.|.++.|...+.
T Consensus 194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 67788899999999887742 112789999887666655543
No 387
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.98 E-value=0.0024 Score=42.37 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=35.1
Q ss_pred CeEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564 171 KKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHN 209 (907)
Q Consensus 171 ~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd 209 (907)
++++..+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456777888999999999999999999999999999996
No 388
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.96 E-value=0.83 Score=49.90 Aligned_cols=153 Identities=18% Similarity=0.212 Sum_probs=90.5
Q ss_pred ccceEEEEe-eCCEEEEEec---CCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCC--CEEEEEecCCcEEEE
Q 002564 93 SAKVNLLLL-FGEHILSIDI---DGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYL--NKVIVGSQEGSLQLW 166 (907)
Q Consensus 93 ~~~V~~l~~-~g~~l~s~~~---dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~l~~~s~dg~i~iw 166 (907)
-.+|..++| ||+.++-..- +|.+++=|-. . ++.++. +..+.|.|.+.. ..+++......|.+|
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds~---v----iGqFEh----V~GlsW~P~~~~~~paLLAVQHkkhVtVW 87 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDSK---V----IGQFEH----VHGLSWAPPCTADTPALLAVQHKKHVTVW 87 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCCcc---E----eeccce----eeeeeecCcccCCCCceEEEeccceEEEE
Confidence 346777887 7776554431 3333222111 1 333322 234445554211 235555567789999
Q ss_pred ecC-----CCeEEEEEcCC---CC--CEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCC
Q 002564 167 NIS-----TKKKLYEFKGW---GS--SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG 236 (907)
Q Consensus 167 d~~-----~~~~~~~~~~h---~~--~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg 236 (907)
-+. +++.+..-..+ .- --..+.|+|...+|++-.....-.++++..+...........+-|.|.+|.+||
T Consensus 88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG 167 (671)
T ss_pred EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcC
Confidence 874 23333222111 11 124578999999999888776667788876655444444446899999999999
Q ss_pred CCEEEEEeCCCcEEEEECCC
Q 002564 237 QPLLASGASSGVISIWNLEK 256 (907)
Q Consensus 237 ~~~l~sg~~dg~I~iwd~~~ 256 (907)
+.++++-+..=.-++||-..
T Consensus 168 ~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CEEEEEeCCeEEEEEecCch
Confidence 96666666666778998543
No 389
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.90 E-value=0.28 Score=48.21 Aligned_cols=121 Identities=21% Similarity=0.219 Sum_probs=76.6
Q ss_pred CCeEEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCe-EEEEEccCCceEEEEeecCC-CCEEEEEEecCCCCEEEEEe--
Q 002564 170 TKKKLYEFKGWGSSISSCVSSPALD-VVAVGCSDGK-IHVHNVRYDEELVTFTHSMR-GAVTALAFSSDGQPLLASGA-- 244 (907)
Q Consensus 170 ~~~~~~~~~~h~~~I~~l~~sp~~~-~la~g~~dg~-I~iwd~~~~~~~~~~~~~~~-~~v~~l~fs~dg~~~l~sg~-- 244 (907)
.|+++....- ...-..|+|+|... -++.+-.-|+ ..++|....+...++..... .-.-.=.|||||. +|...-
T Consensus 57 aGk~v~~~~l-paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~-~LYATEnd 134 (366)
T COG3490 57 AGKIVFATAL-PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR-LLYATEND 134 (366)
T ss_pred CCceeeeeec-ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc-EEEeecCC
Confidence 3444444321 23334578888654 4556655555 56888887776666553311 1222346999999 554432
Q ss_pred ---CCCcEEEEECCCc-eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEE
Q 002564 245 ---SSGVISIWNLEKR-RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295 (907)
Q Consensus 245 ---~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw 295 (907)
.-|.|-|||...+ +.+..+. .|.-....+.+.+||+.++.+. |-|..-
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~~-t~GiGpHev~lm~DGrtlvvan--GGIeth 186 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEFS-THGIGPHEVTLMADGRTLVVAN--GGIETH 186 (366)
T ss_pred CCCCCceEEEEecccccceecccc-cCCcCcceeEEecCCcEEEEeC--Cceecc
Confidence 2378999998755 4555666 7877888999999999988874 444443
No 390
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.88 E-value=0.039 Score=59.16 Aligned_cols=89 Identities=13% Similarity=0.168 Sum_probs=61.9
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCC-----------------CC
Q 002564 176 EFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG-----------------QP 238 (907)
Q Consensus 176 ~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg-----------------~~ 238 (907)
.+......+.+++.+|.+++.|+...=|.|.++|+.++..++.+++-.+..+.-+.....+ ..
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 3445567789999999999888876679999999999988877765433322222221111 12
Q ss_pred EEEEEeCCCcEEEEECCCceeeeeee
Q 002564 239 LLASGASSGVISIWNLEKRRLQSVIR 264 (907)
Q Consensus 239 ~l~sg~~dg~I~iwd~~~~~~~~~~~ 264 (907)
+++-+-.-|.|.||++.+|..+..+.
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEE
Confidence 34455678999999998887777665
No 391
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.87 E-value=0.21 Score=49.56 Aligned_cols=165 Identities=9% Similarity=0.088 Sum_probs=114.2
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc
Q 002564 178 KGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR 257 (907)
Q Consensus 178 ~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~ 257 (907)
.+-...+.++.|+|+.+.|++......-.|+=...|+.+.++....-.....+.+..+|. ++++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcCC
Confidence 444566999999999999998888888888877889999988765455677888988887 6666668889998887765
Q ss_pred eeeeeee--------ccc-ccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCC-------CCCCeEEE
Q 002564 258 RLQSVIR--------EAH-DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-------SAPPLCIR 321 (907)
Q Consensus 258 ~~~~~~~--------~~h-~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h-------~~~v~~i~ 321 (907)
....... ..+ ....-.++|.|.+..|+.+-.-+-+.++.+...... -.......+ -..+.++.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~-l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS-LSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc-cccccccCcccccceEeeccccce
Confidence 3222221 112 556789999999999999888888888876633211 111111112 23577788
Q ss_pred Eec-CCCEEEEEeCCCCEEEEEce
Q 002564 322 FYA-NGRHILSAGQDRAFRLFSVI 344 (907)
Q Consensus 322 ~~~-~g~~l~s~~~dg~i~iwd~~ 344 (907)
|++ .+..++-+..++.+.-.|..
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecC
Confidence 887 55566666666666666543
No 392
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.75 E-value=0.002 Score=60.70 Aligned_cols=143 Identities=18% Similarity=0.184 Sum_probs=86.0
Q ss_pred EEEEecCCcEEEEecCCCeEEEE-EcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEE
Q 002564 154 VIVGSQEGSLQLWNISTKKKLYE-FKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAF 232 (907)
Q Consensus 154 l~~~s~dg~i~iwd~~~~~~~~~-~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~f 232 (907)
+..-+.+|.|.-++++..+.-.. -.-|... ......+.-+++|+.+|.|.+|+..-..............|.++--
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 44445677777777654332111 0111111 1222334578999999999999976222221111111233433332
Q ss_pred ecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccc-cCeEEEEEecCCCEEEEE--cCCCcEEEEEccCC
Q 002564 233 SSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHD-NAIISLHFFANEPVLMSA--SADNSIKMWIFDTT 300 (907)
Q Consensus 233 s~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~--~~d~~i~vw~~~~~ 300 (907)
..+...+..+++.+|.|+.|++.-++.+.... .|. .++..+..+..+..++.+ |.|..++.|++...
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeec-cccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 22222288899999999999999988888776 677 566666666666677777 77777888876543
No 393
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.72 E-value=0.72 Score=45.88 Aligned_cols=178 Identities=13% Similarity=0.078 Sum_probs=114.1
Q ss_pred EEEe-e-CCEEEEEecCC--cEEEEecCCCCccccceeeEecCC-CcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe
Q 002564 98 LLLL-F-GEHILSIDIDG--NMFIWAFKGIEENLAPVGHVKLDD-KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK 172 (907)
Q Consensus 98 ~l~~-~-g~~l~s~~~dg--~v~vWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~ 172 (907)
.+.+ + |..+-|.+.-| .|+.+|+.+++. .....++. -+.-.+.+..+ ......-.++...+||..+.+
T Consensus 49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~----~~~~~l~~~~FgEGit~~~d---~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKV----LQSVPLPPRYFGEGITILGD---KLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp EEEEEETTEEEEEECSTTEEEEEEEETTTSSE----EEEEE-TTT--EEEEEEETT---EEEEEESSSSEEEEEETTTTE
T ss_pred cEEecCCCEEEEeCCCCCcEEEEEEECCCCcE----EEEEECCccccceeEEEECC---EEEEEEecCCeEEEEccccce
Confidence 4555 4 55566777655 599999999987 66666654 33334444443 234455578899999999999
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCC----CCEEEEEEecCCCCEEEEEeCCCc
Q 002564 173 KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMR----GAVTALAFSSDGQPLLASGASSGV 248 (907)
Q Consensus 173 ~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~----~~v~~l~fs~dg~~~l~sg~~dg~ 248 (907)
.+.++.-. +.=+.++ .+++.|+.......+..+|..+-+...++..... ..+.-+.|- +|. +.|=.-....
T Consensus 122 ~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANVW~td~ 196 (264)
T PF05096_consen 122 KIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANVWQTDR 196 (264)
T ss_dssp EEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEETTSSE
T ss_pred EEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEeCCCCe
Confidence 99888642 3335555 5667777777778999999988877776653311 245667776 565 6665556778
Q ss_pred EEEEECCCceeeeeeec-----------cc---ccCeEEEEEecCCCEEEEEc
Q 002564 249 ISIWNLEKRRLQSVIRE-----------AH---DNAIISLHFFANEPVLMSAS 287 (907)
Q Consensus 249 I~iwd~~~~~~~~~~~~-----------~h---~~~V~~l~~~~~~~~l~s~~ 287 (907)
|...|..+|+....+.. .+ ..-.+.+++.|....|...|
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 99999999988877641 01 24578999999877666555
No 394
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=0.074 Score=56.55 Aligned_cols=140 Identities=11% Similarity=0.214 Sum_probs=99.5
Q ss_pred CCCEE-EEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCC-------EEEEEeCCCeEEEEEcccc-e-eEEEee
Q 002564 485 TNTLM-ISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-------LLATVADDLVIRLFDVVAL-R-MVRKFE 554 (907)
Q Consensus 485 ~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~-------~la~~~~dg~I~v~d~~~~-~-~~~~~~ 554 (907)
+.++| .+++....++-.|+..|+.+..+..+..|+-+.+.|+.+ .-.+|-+|..|.-||.+-. + .+..-+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 33444 445566778889999999999999998899999988764 2346777889999998632 2 233333
Q ss_pred cCC----CCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeE-ee-eCCceEEEEECCCCceEEEEEecCCeEEEeec
Q 002564 555 GHT----DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDA-IH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (907)
Q Consensus 555 ~h~----~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~-~~-~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~ 628 (907)
+|. ....|.+-..+| ++|.||.+|-||+||- .+....+ +. ...+|..+..+.||++|+..+.. ++-|-+.
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t--yLlLi~t 499 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT--YLLLIDT 499 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc--EEEEEEE
Confidence 332 334555555566 8999999999999997 5544433 33 35679999999999999888765 4666554
No 395
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.59 E-value=0.42 Score=50.66 Aligned_cols=199 Identities=10% Similarity=0.104 Sum_probs=97.3
Q ss_pred CEEEEEe-cCCcEEEEecCC----CeEEEEEcC---CC----CCEEEEEEcCCCCEEEEEec------CCeEEEEEccCC
Q 002564 152 NKVIVGS-QEGSLQLWNIST----KKKLYEFKG---WG----SSISSCVSSPALDVVAVGCS------DGKIHVHNVRYD 213 (907)
Q Consensus 152 ~~l~~~s-~dg~i~iwd~~~----~~~~~~~~~---h~----~~I~~l~~sp~~~~la~g~~------dg~I~iwd~~~~ 213 (907)
++|++.+ ..++|+|.|+.+ .+..+.+.. +. +.-...-.-|+|++++++-. -|.+.+.|-++.
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 5677765 678999999873 345555542 11 22233445578888887633 266888998888
Q ss_pred ceEEEEeecC--CCCEEEEEEecCCCCEEEEEeC--------------------CCcEEEEECCCceeeeeeeccccc-C
Q 002564 214 EELVTFTHSM--RGAVTALAFSSDGQPLLASGAS--------------------SGVISIWNLEKRRLQSVIREAHDN-A 270 (907)
Q Consensus 214 ~~~~~~~~~~--~~~v~~l~fs~dg~~~l~sg~~--------------------dg~I~iwd~~~~~~~~~~~~~h~~-~ 270 (907)
+......... ..--+..-|.|..+ ++++... ..++.+||+.+.+.++++..+..+ .
T Consensus 168 ~v~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 168 EVKGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp -EEEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred cccceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 8777776542 22345677777665 7776532 368999999999999999855444 4
Q ss_pred eEEEEEecC--CCEEEEEc-CCCcEEEEEccCCCCCcceeEec-------------------cCCCCCCeEEEEecCCCE
Q 002564 271 IISLHFFAN--EPVLMSAS-ADNSIKMWIFDTTDGDPRLLRFR-------------------SGHSAPPLCIRFYANGRH 328 (907)
Q Consensus 271 V~~l~~~~~--~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~-------------------~~h~~~v~~i~~~~~g~~ 328 (907)
...+.|..+ ..+=++++ -..+|..|--+ .++.+...+.. ..-..-|+.|..+.|.++
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~-~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKD-DDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEEE--ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEEEc-CCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 567888765 33333332 23344333221 12222211111 111345789999999998
Q ss_pred EEEE-eCCCCEEEEEceecccceee
Q 002564 329 ILSA-GQDRAFRLFSVIQDQQSREL 352 (907)
Q Consensus 329 l~s~-~~dg~i~iwd~~~~~~~~~~ 352 (907)
|+.+ -.+|.+|.||+......+..
T Consensus 326 LYvs~W~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred EEEEcccCCcEEEEecCCCCCCcEE
Confidence 8755 46899999999876655443
No 396
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.58 E-value=1.1 Score=46.19 Aligned_cols=270 Identities=14% Similarity=0.091 Sum_probs=121.7
Q ss_pred CCcceEEEEEecCeEEEEEcCeEEEEe---CCeeEE--EEccc---ccceEEEEeeCCEEEEEecCCcEEEEecCCCCcc
Q 002564 55 LPKKIRALASYRDYTFAAYGNHIAVVK---RAHQVA--TWSRH---SAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEEN 126 (907)
Q Consensus 55 ~~~~I~~la~~~~~~~~a~g~~I~vw~---~~~~~~--~~~~h---~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~ 126 (907)
...++..|+|..+..-.+.|..=.++. -++.=. ..... .-...++.+.++....++..+ +.+--.+.++..
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g-~ll~T~DgG~tW 93 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPG-LLLHTTDGGKTW 93 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETT-EEEEESSTTSS-
T ss_pred CCCceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCc-eEEEecCCCCCc
Confidence 456788888885544444444422332 222111 11111 223566777766666666555 333444444441
Q ss_pred ccceeeEec----CCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEE-EcCCCCCEEEEEEcCCCCEEEEEec
Q 002564 127 LAPVGHVKL----DDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE-FKGWGSSISSCVSSPALDVVAVGCS 201 (907)
Q Consensus 127 ~~~~~~~~~----~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~-~~~h~~~I~~l~~sp~~~~la~g~~ 201 (907)
..+.. +.......++. ++ .+..++..|.|+.=. +.|+.-.. ...-.+.+..+..+++|++++++..
T Consensus 94 ----~~v~l~~~lpgs~~~i~~l~-~~---~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~ 164 (302)
T PF14870_consen 94 ----ERVPLSSKLPGSPFGITALG-DG---SAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSR 164 (302)
T ss_dssp ----EE----TT-SS-EEEEEEEE-TT---EEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETT
T ss_pred ----EEeecCCCCCCCeeEEEEcC-CC---cEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECc
Confidence 22211 12222222222 22 344445556443322 23332222 2344578899999999999999877
Q ss_pred CCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEEC-CCceeeee-ee-c-ccccCeEEEEEe
Q 002564 202 DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL-EKRRLQSV-IR-E-AHDNAIISLHFF 277 (907)
Q Consensus 202 dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~-~~~~~~~~-~~-~-~h~~~V~~l~~~ 277 (907)
-....-||.-.. .-..........|.+|.|+|++. +.+ ....|.|+.=+. .....-.. +. . ...-.+..++|.
T Consensus 165 G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~ 241 (302)
T PF14870_consen 165 GNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYR 241 (302)
T ss_dssp SSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEES
T ss_pred ccEEEEecCCCc-cceEEccCccceehhceecCCCC-EEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEec
Confidence 555567764321 12222222357899999999987 444 447888888772 22221111 11 0 223458999999
Q ss_pred cCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEE
Q 002564 278 ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 341 (907)
Q Consensus 278 ~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iw 341 (907)
+++...++|+. |.+.+ ..| ....++..+....-...+..+.|.++. .-+..+.+|.|.-|
T Consensus 242 ~~~~~wa~gg~-G~l~~-S~D-gGktW~~~~~~~~~~~n~~~i~f~~~~-~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 242 PPNEIWAVGGS-GTLLV-STD-GGKTWQKDRVGENVPSNLYRIVFVNPD-KGFVLGQDGVLLRY 301 (302)
T ss_dssp SSS-EEEEEST-T-EEE-ESS-TTSS-EE-GGGTTSSS---EEEEEETT-EEEEE-STTEEEEE
T ss_pred CCCCEEEEeCC-ccEEE-eCC-CCccceECccccCCCCceEEEEEcCCC-ceEEECCCcEEEEe
Confidence 98877777664 44432 222 222333333333445678899998664 45555678876544
No 397
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.58 E-value=1 Score=48.88 Aligned_cols=145 Identities=16% Similarity=0.189 Sum_probs=84.4
Q ss_pred ccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCC-CCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEE
Q 002564 140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWG-SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVT 218 (907)
Q Consensus 140 ~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~-~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~ 218 (907)
+....+.-. +.+.+|+.+| +..||..+++.++.-.... .+|..+..+-.++ +-+|+.+| |.+.+.+..+....
T Consensus 167 V~aLv~D~~---g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~sn~ 240 (671)
T COG3292 167 VVALVFDAN---GRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRASNW 240 (671)
T ss_pred ceeeeeecc---CcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhcccccc
Confidence 334444444 4688898988 8889998988887655443 6777777776664 66777766 67777665333222
Q ss_pred EeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeeccc--ccCeEEEEEecCCCEEEEEcCCCcEEE
Q 002564 219 FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH--DNAIISLHFFANEPVLMSASADNSIKM 294 (907)
Q Consensus 219 ~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~l~s~~~d~~i~v 294 (907)
...-..+.|..+.=..+|. +-.|+.+|..+ ..+....+......-| -+.|.++....+|. |-+++.++.+++
T Consensus 241 ~~~lp~~~I~ll~qD~qG~--lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~ 314 (671)
T COG3292 241 GPMLPSGNILLLVQDAQGE--LWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRY 314 (671)
T ss_pred CCCCcchheeeeecccCCC--EEEeeccccee-EecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEE
Confidence 2222245666665555554 66677666443 3444443333322122 23556666666664 555555554443
No 398
>PRK13684 Ycf48-like protein; Provisional
Probab=96.54 E-value=1.4 Score=46.81 Aligned_cols=272 Identities=10% Similarity=0.054 Sum_probs=133.3
Q ss_pred CcceEEEEEecCeEEEEEcCeEEEEe---CCeeEEE----EcccccceEEEEeeCCEEEEEecCCcEEEEecCCCCcccc
Q 002564 56 PKKIRALASYRDYTFAAYGNHIAVVK---RAHQVAT----WSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLA 128 (907)
Q Consensus 56 ~~~I~~la~~~~~~~~a~g~~I~vw~---~~~~~~~----~~~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~ 128 (907)
...+.+|+|..+..-.+.|..-.||. -++.-.. +......+.++.+.++....++..|.| +...++-....
T Consensus 45 ~~~l~~v~F~d~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~~g~i--~~S~DgG~tW~ 122 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLISISFKGDEGWIVGQPSLL--LHTTDGGKNWT 122 (334)
T ss_pred CCceEEEEEeCCCcEEEEECCCEEEEEcCCCCCceECccCCcccccceeeeEEcCCcEEEeCCCceE--EEECCCCCCCe
Confidence 56788899876655555555544443 2222111 111223466777655544445555543 33333222111
Q ss_pred ceeeE-ecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEE
Q 002564 129 PVGHV-KLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFK-GWGSSISSCVSSPALDVVAVGCSDGKIH 206 (907)
Q Consensus 129 ~~~~~-~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-~h~~~I~~l~~sp~~~~la~g~~dg~I~ 206 (907)
.+..- ..........++.+. .+..++..|.|..=+ +.|+.-..+. .-...+..+.+.|++.+++++.. |.+.
T Consensus 123 ~~~~~~~~~~~~~~i~~~~~~----~~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~-G~i~ 196 (334)
T PRK13684 123 RIPLSEKLPGSPYLITALGPG----TAEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSSR-GNFY 196 (334)
T ss_pred EccCCcCCCCCceEEEEECCC----cceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEeCC-ceEE
Confidence 11100 011111112222222 123334445343222 2333322222 22457889999999877766654 6443
Q ss_pred EEEccC-CceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecc---cccCeEEEEEecCCCE
Q 002564 207 VHNVRY-DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA---HDNAIISLHFFANEPV 282 (907)
Q Consensus 207 iwd~~~-~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~~~~~~~ 282 (907)
. .... ++.-..........++++.+.++++ ++++| ..|.+.+=..+.+..-...... ....+.++.+.+++..
T Consensus 197 ~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~ 273 (334)
T PRK13684 197 S-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEI 273 (334)
T ss_pred E-EcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCE
Confidence 2 2222 2333333334456899999999998 55555 4576653334444332222211 2245788999988765
Q ss_pred EEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEE
Q 002564 283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 342 (907)
Q Consensus 283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd 342 (907)
++ ++.+|.+.. ..+. ...++......+-......+.|..+++. +..+..|.|..++
T Consensus 274 ~~-~G~~G~v~~-S~d~-G~tW~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~G~il~~~ 329 (334)
T PRK13684 274 WA-GGGNGTLLV-SKDG-GKTWEKDPVGEEVPSNFYKIVFLDPEKG-FVLGQRGVLLRYV 329 (334)
T ss_pred EE-EcCCCeEEE-eCCC-CCCCeECCcCCCCCcceEEEEEeCCCce-EEECCCceEEEec
Confidence 55 445675543 2222 2223332221222345777887766554 5566778877665
No 399
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.50 E-value=0.0081 Score=56.81 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=68.5
Q ss_pred CCCEEEEEecCCeEEEEECCC-CceeeeeecC-cceeE-EEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCC-CCe
Q 002564 485 TNTLMISAGYHGDIKVWDFKG-RDLKSRWEVG-CSLVK-IVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHT-DRI 560 (907)
Q Consensus 485 ~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~-~~i~~-~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~-~~I 560 (907)
-+..++.|+.+|.|.+|...- +......... ..|.+ +.-..++.+..+++.||.|+.|++.-.+.+.....|. .++
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 346788999999999998762 1111111111 22322 2333456689999999999999999888888777777 555
Q ss_pred eeEEECCCCcEEEEE--eCCCcEEEEEcC
Q 002564 561 TDFCFSEDGKWLLSS--GMDGSLRIWDVI 587 (907)
Q Consensus 561 ~~l~fspdg~~l~s~--s~Dg~I~vwd~~ 587 (907)
.....+..+++|+.+ |.|..++.|++.
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchh
Confidence 555555556666666 666666666654
No 400
>PHA02713 hypothetical protein; Provisional
Probab=96.45 E-value=0.12 Score=59.10 Aligned_cols=190 Identities=10% Similarity=0.059 Sum_probs=94.8
Q ss_pred CEEEEEecC------CcEEEEecCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEEecCC-----eEEEEEccCCceEEEE
Q 002564 152 NKVIVGSQE------GSLQLWNISTKKKLYEFKGW-GSSISSCVSSPALDVVAVGCSDG-----KIHVHNVRYDEELVTF 219 (907)
Q Consensus 152 ~~l~~~s~d------g~i~iwd~~~~~~~~~~~~h-~~~I~~l~~sp~~~~la~g~~dg-----~I~iwd~~~~~~~~~~ 219 (907)
...++|+.+ ..+..||..+..-. .+..- ...-......-++++.+.|+.++ .+..||..+++-...-
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 455666643 34778887766421 11110 11111122233567777887653 4788998876533211
Q ss_pred eecC-CCCEEEEEEecCCCCEEEEEeCC-----------------------CcEEEEECCCceeeeeeecccccCeEEEE
Q 002564 220 THSM-RGAVTALAFSSDGQPLLASGASS-----------------------GVISIWNLEKRRLQSVIREAHDNAIISLH 275 (907)
Q Consensus 220 ~~~~-~~~v~~l~fs~dg~~~l~sg~~d-----------------------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 275 (907)
.... ......+ .-+|. +.+.|+.+ ..+..||..+.+-...-...+...-.+++
T Consensus 384 ~mp~~r~~~~~~--~~~g~-IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~ 460 (557)
T PHA02713 384 DMPIALSSYGMC--VLDQY-IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV 460 (557)
T ss_pred CCCcccccccEE--EECCE-EEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE
Confidence 1111 1111222 23566 77777754 24778888877543222211111111222
Q ss_pred EecCCCEEEEEcCCC------cEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCC--CEEEEEceecc
Q 002564 276 FFANEPVLMSASADN------SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR--AFRLFSVIQDQ 347 (907)
Q Consensus 276 ~~~~~~~l~s~~~d~------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg--~i~iwd~~~~~ 347 (907)
.-++.+.+.||.++ .+..||.++. ..+..+............+.+ +|+..++||.+| ++..||..+++
T Consensus 461 -~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~-~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 461 -SHKDDIYVVCDIKDEKNVKTCIFRYNTNTY-NGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred -EECCEEEEEeCCCCCCccceeEEEecCCCC-CCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 33566667776542 2445554430 345554444333333323333 678888999888 66777776655
Q ss_pred cc
Q 002564 348 QS 349 (907)
Q Consensus 348 ~~ 349 (907)
-.
T Consensus 537 W~ 538 (557)
T PHA02713 537 WN 538 (557)
T ss_pred cc
Confidence 43
No 401
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.0095 Score=68.36 Aligned_cols=102 Identities=21% Similarity=0.496 Sum_probs=75.0
Q ss_pred CCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCe
Q 002564 192 ALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI 271 (907)
Q Consensus 192 ~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V 271 (907)
.+-.+++|+..|.+...|+...=.......+..++|++++|+.||. +++.|-.+|.|.+||...++..+.+. .|..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~ap~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVIT-EHGAPV 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeee-ecCCcc
Confidence 4457889999999998887643111112223367999999999999 88899999999999999999998887 666655
Q ss_pred EEEE---EecCCCEEEEEcCCCcEEEEEc
Q 002564 272 ISLH---FFANEPVLMSASADNSIKMWIF 297 (907)
Q Consensus 272 ~~l~---~~~~~~~l~s~~~d~~i~vw~~ 297 (907)
+++- +..++..++++...|. +|.+
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 5544 3445557788777675 6654
No 402
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=96.37 E-value=0.018 Score=52.46 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=84.4
Q ss_pred HHHHhhcc-ccCChHHHHHHHHhC-CCCcchheeccccccCCCccccccCcchHHHHHHHHHHHHHHHhcCCCHHhHHHH
Q 002564 775 IQLLHSCA-EMKNFSAFTDYIKSL-SPSTLDMELRMLQIIDHDDHQELDKRPEYLSIELLLDYLIHEISCRNNFEFIQAV 852 (907)
Q Consensus 775 ~~~l~~~~-~~~~~~~~~~~l~~~-~~s~~~~ei~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (907)
.+.|..+. .+.+...++.+|.+| --.++...+..-+ ...|..+|+|+...+...+.+.++.-+
T Consensus 35 ~~ALD~aL~~~~~p~~~vavl~EL~~R~~L~~AL~~Rd---------------e~~L~piL~Fl~k~i~~pr~~~~l~~v 99 (148)
T PF09384_consen 35 KKALDAALVKNKSPEVVVAVLEELIRRGALRAALAGRD---------------EESLEPILKFLIKNITDPRYTRILVDV 99 (148)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHccHHHHHHHhCC---------------HHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 34444444 445556666666666 4555555555444 388999999999999999999999999
Q ss_pred HHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHhhccceeeeh
Q 002564 853 IRLFLKIHGETVRCHTKLQDKARKLLEVQSAVWQKIDKMFQSARCVVS 900 (907)
Q Consensus 853 ~~~~l~~h~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 900 (907)
+..+|-+.++.+.+.+.+.+.+..|+..++++-...+.+ ....|++.
T Consensus 100 ~~~ildiY~~~~~~s~~v~~~~~~L~~~v~~E~~~~~~l-~~l~G~ld 146 (148)
T PF09384_consen 100 ANIILDIYSPVIGQSPEVDKLFQKLQRKVQEELQLQKEL-LELQGMLD 146 (148)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHh
Confidence 999999999999999999999999999997777665555 55566554
No 403
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=1.3 Score=43.94 Aligned_cols=235 Identities=10% Similarity=0.052 Sum_probs=141.4
Q ss_pred CcceEEEEEecCeEEEEEcCeEEEEeCCe------e-EEEEcccccceEEEEeeCCEEEEEecCCcEEEEecCCCCcccc
Q 002564 56 PKKIRALASYRDYTFAAYGNHIAVVKRAH------Q-VATWSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLA 128 (907)
Q Consensus 56 ~~~I~~la~~~~~~~~a~g~~I~vw~~~~------~-~~~~~~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~ 128 (907)
.+.|.++.....+-+++.|..+.+.|... . +...-.-.+-+..+.+.+++...+..+.-++|.|+.+....
T Consensus 42 g~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP-- 119 (370)
T COG5276 42 GKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSP-- 119 (370)
T ss_pred cCCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEecccEEEEEcCCCceEEEeccCCCCc--
Confidence 48899999999999999999876666321 1 11122233455566678999999999999999999987662
Q ss_pred ceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe---EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeE
Q 002564 129 PVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK---KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKI 205 (907)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~---~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I 205 (907)
..+..-...-..-.+.-.+ ++..++..+.-+.+.|+.+.. +...+......-..++.| |++-.++..|+-+
T Consensus 120 --~~~~~lnt~gyaygv~vsG--n~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL 193 (370)
T COG5276 120 --TLIGFLNTDGYAYGVYVSG--NYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGL 193 (370)
T ss_pred --ceeccccCCceEEEEEecC--CEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCe
Confidence 2221111112333445556 778888756558888886543 333344334444555554 5677777889999
Q ss_pred EEEEccCCceEEEEeecCC-CCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEE-EEecCCCEE
Q 002564 206 HVHNVRYDEELVTFTHSMR-GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISL-HFFANEPVL 283 (907)
Q Consensus 206 ~iwd~~~~~~~~~~~~~~~-~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l-~~~~~~~~l 283 (907)
.|.|+.......-+..-.. ..+.++..+++-. +++... --+.+-|..+.+....+..-....+.++ .+.-.+++.
T Consensus 194 ~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~-y~vvy~--egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~ 270 (370)
T COG5276 194 TIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA-YLVVYD--EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYA 270 (370)
T ss_pred EEEEccCCCCCeEEEEEecCCceEEEEecCCee-EEEEcc--cceEEEecCCCCCceEeeccccCCcccccceeccccee
Confidence 9999976543222221112 3788888887765 555443 3477777766654333331122222222 222345566
Q ss_pred EEEcCCCcEEEEEccCCC
Q 002564 284 MSASADNSIKMWIFDTTD 301 (907)
Q Consensus 284 ~s~~~d~~i~vw~~~~~~ 301 (907)
..+..+.-+.+-|+..+.
T Consensus 271 Yvadga~gl~~idisnp~ 288 (370)
T COG5276 271 YVADGAKGLPIIDISNPP 288 (370)
T ss_pred eeeccccCceeEeccCCC
Confidence 666666667777666543
No 404
>PHA02713 hypothetical protein; Provisional
Probab=96.28 E-value=0.28 Score=56.20 Aligned_cols=218 Identities=12% Similarity=0.133 Sum_probs=109.4
Q ss_pred eEEEEEcCcceEEEecCCCCcce--EEEEEecCeEEEEEcC--------eEEEEeCCeeEEE-Ec---ccccceEEEEee
Q 002564 37 AFHIYNCAKLNLVLVGPQLPKKI--RALASYRDYTFAAYGN--------HIAVVKRAHQVAT-WS---RHSAKVNLLLLF 102 (907)
Q Consensus 37 ~v~iwd~~~~~~~~~~~~~~~~I--~~la~~~~~~~~a~g~--------~I~vw~~~~~~~~-~~---~h~~~V~~l~~~ 102 (907)
.+..||..+.+-....+ .+.+. .+++...+..|++.|. .+..||.....-. .. ...........+
T Consensus 273 ~v~~yd~~~~~W~~l~~-mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 273 CILVYNINTMEYSVIST-IPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CEEEEeCCCCeEEECCC-CCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 46789998876544332 12222 3556666777776652 1667774332111 11 111222233346
Q ss_pred CCEEEEEecCC-----cEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecC-----------------
Q 002564 103 GEHILSIDIDG-----NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE----------------- 160 (907)
Q Consensus 103 g~~l~s~~~dg-----~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~d----------------- 160 (907)
|...+.||.++ ++..||..+.+-.. +..+..... ...+..-++ ...++|+.+
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~--~~~mp~~r~--~~~~~~~~g--~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKM--LPDMPIALS--SYGMCVLDQ--YIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEE--CCCCCcccc--cccEEEECC--EEEEEeCCCccccccccccccccccc
Confidence 66666677654 37888887654311 111111111 112222344 455556554
Q ss_pred ------CcEEEEecCCCeE--EEEEcCCCCCEEEEEEcCCCCEEEEEecC------CeEEEEEccC-CceE--EEEeecC
Q 002564 161 ------GSLQLWNISTKKK--LYEFKGWGSSISSCVSSPALDVVAVGCSD------GKIHVHNVRY-DEEL--VTFTHSM 223 (907)
Q Consensus 161 ------g~i~iwd~~~~~~--~~~~~~h~~~I~~l~~sp~~~~la~g~~d------g~I~iwd~~~-~~~~--~~~~~~~ 223 (907)
..+..||..+.+= +..+.. ......+..-++++.++|+.+ ..+..||..+ ++-. ..+...
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~--~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~- 502 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWT--GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR- 502 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCc--ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc-
Confidence 2467777766532 222211 111122223346666677654 2467899887 4432 222221
Q ss_pred CCCEEEEEEecCCCCEEEEEeCCC--cEEEEECCCceeeeeeecccc
Q 002564 224 RGAVTALAFSSDGQPLLASGASSG--VISIWNLEKRRLQSVIREAHD 268 (907)
Q Consensus 224 ~~~v~~l~fs~dg~~~l~sg~~dg--~I~iwd~~~~~~~~~~~~~h~ 268 (907)
......+.+ +|. +.++|+.+| .+..||..+.+-..... .|.
T Consensus 503 r~~~~~~~~--~~~-iyv~Gg~~~~~~~e~yd~~~~~W~~~~~-~~~ 545 (557)
T PHA02713 503 LSALHTILH--DNT-IMMLHCYESYMLQDTFNVYTYEWNHICH-QHS 545 (557)
T ss_pred cccceeEEE--CCE-EEEEeeecceeehhhcCcccccccchhh-hcC
Confidence 112222222 566 888999887 77888888876655544 444
No 405
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.12 Score=59.94 Aligned_cols=112 Identities=12% Similarity=0.174 Sum_probs=82.7
Q ss_pred ccceEEEEeeCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe
Q 002564 93 SAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK 172 (907)
Q Consensus 93 ~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~ 172 (907)
...+.+.+..+.+++.|+..|.+...|..+.-.. ...-....+.+.+.+|+.++ ..++.|-.+|.|.+||+..++
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~---~~~ne~v~~~Vtsvafn~dg--~~l~~G~~~G~V~v~D~~~~k 163 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGP---LHQNERVQGPVTSVAFNQDG--SLLLAGLGDGHVTVWDMHRAK 163 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccch---hhcCCccCCcceeeEecCCC--ceeccccCCCcEEEEEccCCc
Confidence 4456666677889999998999998887664221 11111234567788899999 889999999999999999999
Q ss_pred EEEEEcCCCCCEEEEEE---cCCCCEEEEEecCCeEEEEEcc
Q 002564 173 KLYEFKGWGSSISSCVS---SPALDVVAVGCSDGKIHVHNVR 211 (907)
Q Consensus 173 ~~~~~~~h~~~I~~l~~---sp~~~~la~g~~dg~I~iwd~~ 211 (907)
.++.+..|+.+.+.+-+ ..++..+.++...|. +|++.
T Consensus 164 ~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 164 ILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 99999887777666543 445557777777675 67654
No 406
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.22 E-value=1.8 Score=47.09 Aligned_cols=357 Identities=13% Similarity=0.087 Sum_probs=173.6
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceee
Q 002564 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ 260 (907)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~ 260 (907)
..+|.++.+..+| .+-+|+.|| +..||..+++.+..-......+|..+.-+-.|+ |.+|+.+| |.+.+.+..+..
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~--LWVGTdqG-v~~~e~~G~~~s 238 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR--LWVGTDQG-VYLQEAEGWRAS 238 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc--EEEEeccc-eEEEchhhcccc
Confidence 5778889898887 466788877 677888888877766655446788888877887 67787655 777776653332
Q ss_pred eeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcc-eeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEE
Q 002564 261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR-LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR 339 (907)
Q Consensus 261 ~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~-~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~ 339 (907)
.....-..+.|..+.-..+| .+-.|+..|-.+ ...+..... +..........|.++....+| -+-+++.+|.++
T Consensus 239 n~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r---~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dG-sLWv~t~~giv~ 313 (671)
T COG3292 239 NWGPMLPSGNILLLVQDAQG-ELWIGTENGLWR---TRLPRQGLQIPLSKMHLGVSTVNSLWLDTDG-SLWVGTYGGIVR 313 (671)
T ss_pred ccCCCCcchheeeeecccCC-CEEEeeccccee---EecCCCCccccccccCCccccccceeeccCC-CEeeeccCceEE
Confidence 22221122333333322233 344444444222 122211111 111111112344555555455 355566665554
Q ss_pred EEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeec
Q 002564 340 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP 419 (907)
Q Consensus 340 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~ 419 (907)
+-+-. |.........+
T Consensus 314 ~~~a~--------------------------------------------w~~ma~in~~d-------------------- 329 (671)
T COG3292 314 YLTAD--------------------------------------------WKRMAVINDSD-------------------- 329 (671)
T ss_pred Eecch--------------------------------------------hhheeeeecCC--------------------
Confidence 43211 00000000000
Q ss_pred CCCCCCceEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCe
Q 002564 420 CPENPTAVKACTISA--CGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD 497 (907)
Q Consensus 420 ~~~~~~~v~~~~~s~--~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 497 (907)
+ ..+..++..| .+..+-...+.|.+.+-+-.+|....... ......|+.++++.+++ +-.++...-
T Consensus 330 --G--~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~-------q~Rg~nit~~~~d~~g~-lWlgs~q~G 397 (671)
T COG3292 330 --G--GVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVH-------QLRGMNITTTLEDSRGR-LWLGSMQNG 397 (671)
T ss_pred --C--chhhhhccCchhcccceeeccccceEEEecCCCCcEEEEee-------eccccccchhhhccCCc-EEEEecccc
Confidence 0 0011111111 12222223333344444444554444332 13335677777777554 444554434
Q ss_pred EEEEECCC-Cceeeeeec--CcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee--cC---CCCeeeEEECCCC
Q 002564 498 IKVWDFKG-RDLKSRWEV--GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE--GH---TDRITDFCFSEDG 569 (907)
Q Consensus 498 i~iwd~~~-~~~~~~~~~--~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~--~h---~~~I~~l~fspdg 569 (907)
+..|+-++ +-....... .+++..+.-.|+++ |-.|+.+|.++. +.+.++....+. .| .+.|..+..-|+|
T Consensus 398 Lsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g 475 (671)
T COG3292 398 LSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDG 475 (671)
T ss_pred hhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-CccccchhcccccccCcCCcchhhhhccCCCC
Confidence 44555554 222222222 26788888888888 777888876654 334433332222 12 2457788899999
Q ss_pred cEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564 570 KWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (907)
Q Consensus 570 ~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (907)
+.-+.+ .+| |..|+.+.....-.+.....-....+--.++++-.+...+ +.-|.+.
T Consensus 476 ~Lw~a~-g~g-va~~~sq~~~~~~~l~~~~q~qy~f~~~~~d~vw~~~~Rg--~vr~r~s 531 (671)
T COG3292 476 RLWLAA-GSG-VAAWESQRRMFVPILDLTGQRQYSFVPVGGDEVWVHRLRG--LVRWRHS 531 (671)
T ss_pred ceEEEe-cce-eeeeccccceecccccccceeeEEEEEccCceEeeeeece--eeeeccC
Confidence 854432 244 6888866443332222222111111223555555544333 5556554
No 407
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.19 E-value=2.4 Score=45.88 Aligned_cols=143 Identities=18% Similarity=0.272 Sum_probs=93.8
Q ss_pred CEEEEEecCCcEEEEecCCCe-----EEEEEcCCCCCEEEEEEcC-----CCCEEEEEecCCeEEEEEccCC--c-----
Q 002564 152 NKVIVGSQEGSLQLWNISTKK-----KLYEFKGWGSSISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYD--E----- 214 (907)
Q Consensus 152 ~~l~~~s~dg~i~iwd~~~~~-----~~~~~~~h~~~I~~l~~sp-----~~~~la~g~~dg~I~iwd~~~~--~----- 214 (907)
.+|++|+..|.++||+...+. ++.+.+ -..+|..++.-+ +...||+ -.-..+.||.+... .
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 689999999999999985433 222222 367888887543 2345666 44578999988421 1
Q ss_pred --eE-EEEeecCCCCEEEEEEec----CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEc
Q 002564 215 --EL-VTFTHSMRGAVTALAFSS----DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS 287 (907)
Q Consensus 215 --~~-~~~~~~~~~~v~~l~fs~----dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~ 287 (907)
.+ ..+.+.-......++.-| .|+.++.+-+.||.+.+|+-+.-.....+. ..--.-.+.|.+....+++++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp--~~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP--DFLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC--CCCCCcCeEEeecCCEEEEec
Confidence 11 112222223344444443 234688899999999999977665555544 233335678888888999999
Q ss_pred CCCcEEEEEcc
Q 002564 288 ADNSIKMWIFD 298 (907)
Q Consensus 288 ~d~~i~vw~~~ 298 (907)
.+..+..|.+.
T Consensus 194 ss~~l~~Yky~ 204 (418)
T PF14727_consen 194 SSWTLECYKYQ 204 (418)
T ss_pred CceeEEEecHH
Confidence 99999999764
No 408
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.18 E-value=1.1 Score=42.92 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=42.2
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCC
Q 002564 428 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDST 485 (907)
Q Consensus 428 ~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 485 (907)
-.+++..+|+..++..+.|+|..+|..+|+.+.++. -....|++.+|-..
T Consensus 215 DGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik--------lPt~qitsccFgGk 264 (310)
T KOG4499|consen 215 DGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK--------LPTPQITSCCFGGK 264 (310)
T ss_pred CcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE--------cCCCceEEEEecCC
Confidence 345667789999999999999999999999999986 44778999999654
No 409
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.14 E-value=0.49 Score=47.99 Aligned_cols=151 Identities=13% Similarity=0.095 Sum_probs=92.5
Q ss_pred CEEEEEEcCCCCEEEEEe-cCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEE-CCCceee
Q 002564 183 SISSCVSSPALDVVAVGC-SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN-LEKRRLQ 260 (907)
Q Consensus 183 ~I~~l~~sp~~~~la~g~-~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd-~~~~~~~ 260 (907)
.+.+.+++++++.+|... .++.-.+|-...+........ ...++.-+|++++. +.+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCCC-EEEEEcCCCceEEEEecCCCcce
Confidence 789999999999777655 233334444444544444432 34789999999987 666666566666663 3333222
Q ss_pred e-eee-cccccCeEEEEEecCCCEEEEEc---CCCcEEEEEccCCCCC-ccee----EeccCCCCCCeEEEEecCCCEEE
Q 002564 261 S-VIR-EAHDNAIISLHFFANEPVLMSAS---ADNSIKMWIFDTTDGD-PRLL----RFRSGHSAPPLCIRFYANGRHIL 330 (907)
Q Consensus 261 ~-~~~-~~h~~~V~~l~~~~~~~~l~s~~---~d~~i~vw~~~~~~~~-~~~~----~~~~~h~~~v~~i~~~~~g~~l~ 330 (907)
. .+. ..-.+.|..+.++|||..++... .++.|.+=-+...... +..+ .........+..+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 1 111 11112899999999999777655 3466666555433222 2222 22223456889999999988777
Q ss_pred EEeCCC
Q 002564 331 SAGQDR 336 (907)
Q Consensus 331 s~~~dg 336 (907)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 665444
No 410
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.13 E-value=1.5 Score=44.42 Aligned_cols=117 Identities=14% Similarity=0.145 Sum_probs=69.4
Q ss_pred CEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEc-cCCCCCc
Q 002564 226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF-DTTDGDP 304 (907)
Q Consensus 226 ~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~-~~~~~~~ 304 (907)
.+.+.++++||+.+.++...++.-.+|-...+....... ....+..-.|.+++...+....+...+++.. .......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 689999999998555555233333344333343333332 2237888899999877766666666777742 1222221
Q ss_pred ceeEeccCCCCCCeEEEEecCCCEEEEEe---CCCCEEEEEcee
Q 002564 305 RLLRFRSGHSAPPLCIRFYANGRHILSAG---QDRAFRLFSVIQ 345 (907)
Q Consensus 305 ~~~~~~~~h~~~v~~i~~~~~g~~l~s~~---~dg~i~iwd~~~ 345 (907)
..+... .-...|..++++|||..++... .++.|.+--+..
T Consensus 103 ~~v~~~-~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r 145 (253)
T PF10647_consen 103 VEVDWP-GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVR 145 (253)
T ss_pred EEeccc-ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEe
Confidence 222221 1112899999999999888655 346666655543
No 411
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.08 E-value=0.022 Score=39.76 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=30.4
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCce
Q 002564 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEE 215 (907)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~ 215 (907)
...|.+++|+|..++||.|+.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 567999999999999999999999999998 5554
No 412
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=96.08 E-value=0.023 Score=50.86 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHhcCCCHHhHHHHHHHHHHhhccc-cccchHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 002564 827 LSIELLLDYLIHEISCRNNFEFIQAVIRLFLKIHGET-VRCHTKLQDKARKLLEVQSAVWQKIDKMFQSA 895 (907)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 895 (907)
+.+..+|+|+.++-...|.....|..|+.+|+.|... |.+.|.+++.++.|....++-.+|++++.+..
T Consensus 61 ~~l~~LL~~ir~WNTNsr~~~vAQ~vL~~il~~~~~~~L~~~~~~~~~le~lipYteRH~~Rl~~L~q~s 130 (141)
T PF08625_consen 61 EQLEKLLRFIRDWNTNSRTSHVAQRVLNAILKSHPPEELLKIPGLKEILEALIPYTERHFQRLDRLLQKS 130 (141)
T ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCCHHHHHccccHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999988754 57889999999999999999999999998764
No 413
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=1.7 Score=43.12 Aligned_cols=272 Identities=11% Similarity=0.098 Sum_probs=152.3
Q ss_pred CCcceEEEEEecCeEEEEEcCe-EEEEeCCee---EEE-EcccccceEEEEeeCCEEEEEecCCcEEEEecCCCCccccc
Q 002564 55 LPKKIRALASYRDYTFAAYGNH-IAVVKRAHQ---VAT-WSRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAP 129 (907)
Q Consensus 55 ~~~~I~~la~~~~~~~~a~g~~-I~vw~~~~~---~~~-~~~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~~~ 129 (907)
.+.-+..+.++.++.|+|-+.. +++.|...+ ... +-...+--.++...|++...+..|.-+.+.|+.+..... .
T Consensus 85 ~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~-l 163 (370)
T COG5276 85 ARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ-L 163 (370)
T ss_pred hhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCce-e
Confidence 4566778889999999998766 999985332 222 222224445666789999999977778889998765521 1
Q ss_pred eeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe---EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEE
Q 002564 130 VGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK---KLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIH 206 (907)
Q Consensus 130 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~---~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~ 206 (907)
.............++++- ++-+.+..|+-+.+-|+.+.. .+.... ....+.++..+++-.+++...+ -+.
T Consensus 164 agrya~~~~d~~~v~ISG----n~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~e--gvl 236 (370)
T COG5276 164 AGRYALPGGDTHDVAISG----NYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYDE--GVL 236 (370)
T ss_pred eeeeccCCCCceeEEEec----CeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEccc--ceE
Confidence 344444544444555543 567778788889999997643 222222 2447888888888777776554 467
Q ss_pred EEEccCCceEEEEeecCCCCEEEE-EEecCCCCEEEEEeCCCcEEEEECCCcee---eeeeecccccCeEEEEEecCCCE
Q 002564 207 VHNVRYDEELVTFTHSMRGAVTAL-AFSSDGQPLLASGASSGVISIWNLEKRRL---QSVIREAHDNAIISLHFFANEPV 282 (907)
Q Consensus 207 iwd~~~~~~~~~~~~~~~~~v~~l-~fs~dg~~~l~sg~~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~~~~~~~ 282 (907)
+-|..+.+....+..-....+.++ .|.-.++ +......+.-+.+-|+.+..- ...+. .....-..+... +.+
T Consensus 237 ivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~-~~Yvadga~gl~~idisnp~spfl~ss~~-t~g~~a~gi~ay--~~y 312 (370)
T COG5276 237 IVDVSGPSSPTVFGSYETSNPVSISTVPVSGE-YAYVADGAKGLPIIDISNPPSPFLSSSLD-TAGYQAAGIRAY--GNY 312 (370)
T ss_pred EEecCCCCCceEeeccccCCcccccceecccc-eeeeeccccCceeEeccCCCCCchhcccc-CCCccccceEEe--cCe
Confidence 777776654444432222333333 2332344 455555566666666654422 11121 111122233322 334
Q ss_pred EEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEc
Q 002564 283 LMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343 (907)
Q Consensus 283 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~ 343 (907)
+..+..+ ...+-+....+ ......+....+.+...+-+.+.+.+...++-+.+|+.
T Consensus 313 ~yiadkn-~g~vV~~s~~s----~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 313 NYIADKN-TGAVVDASPPS----MMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred eEeccCC-ceEEEeCCChh----hcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 4444333 23333332221 11111222223333334445557888888999999875
No 414
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.00 E-value=4.9 Score=47.60 Aligned_cols=193 Identities=13% Similarity=0.131 Sum_probs=112.1
Q ss_pred eCCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcc--------cEEEEc--------------CCCCCCEEEEEec
Q 002564 102 FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFT--------PTCIMH--------------PDTYLNKVIVGSQ 159 (907)
Q Consensus 102 ~g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--------------p~~~~~~l~~~s~ 159 (907)
.++.|+.++.++.|.-.|..+++... ++....... ....+. |.....+|+.++.
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW----~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~ 268 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKW----KFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS 268 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEE----EEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecC
Confidence 47788888888888888888888732 222111100 001111 1111258999999
Q ss_pred CCcEEEEecCCCeEEEEEcCCCCCEE-------------EEEEcC--CCCEEEEEec----------CCeEEEEEccCCc
Q 002564 160 EGSLQLWNISTKKKLYEFKGWGSSIS-------------SCVSSP--ALDVVAVGCS----------DGKIHVHNVRYDE 214 (907)
Q Consensus 160 dg~i~iwd~~~~~~~~~~~~h~~~I~-------------~l~~sp--~~~~la~g~~----------dg~I~iwd~~~~~ 214 (907)
|+.+.-.|.++|+....|.. .+.|. .+.-+| .++.+++|+. +|.|+-+|.++|+
T Consensus 269 Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk 347 (764)
T TIGR03074 269 DARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA 347 (764)
T ss_pred CCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence 99999999999999988753 22221 112222 2346666643 6889999999999
Q ss_pred eEEEEeecCC--------C--------CE-EEEEEecCCCCEEEEEe------------------CCCcEEEEECCCcee
Q 002564 215 ELVTFTHSMR--------G--------AV-TALAFSSDGQPLLASGA------------------SSGVISIWNLEKRRL 259 (907)
Q Consensus 215 ~~~~~~~~~~--------~--------~v-~~l~fs~dg~~~l~sg~------------------~dg~I~iwd~~~~~~ 259 (907)
.+-.+..... + .+ ..+++.++.. ++..+. ..+.|.-.|.++|+.
T Consensus 348 l~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g-lvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~ 426 (764)
T TIGR03074 348 LVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG-LVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKE 426 (764)
T ss_pred EeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCC-eEEEeCCCccccccCCccccCcccccceEEEEeCCCCce
Confidence 9888763210 1 11 1233444333 222211 235677778888888
Q ss_pred eeeeecccc--------cCeEEEEEec-CCC---EEEEEcCCCcEEEEEccCC
Q 002564 260 QSVIREAHD--------NAIISLHFFA-NEP---VLMSASADNSIKMWIFDTT 300 (907)
Q Consensus 260 ~~~~~~~h~--------~~V~~l~~~~-~~~---~l~s~~~d~~i~vw~~~~~ 300 (907)
.-.++..|. ....-+.+.. +|+ .++.++.+|.+.+.|-+++
T Consensus 427 ~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG 479 (764)
T TIGR03074 427 RWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG 479 (764)
T ss_pred EEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC
Confidence 777763232 0111112222 442 7888888888887766554
No 415
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.92 E-value=1.7 Score=41.66 Aligned_cols=141 Identities=9% Similarity=0.139 Sum_probs=86.6
Q ss_pred CcEEEEEEcCCCCEEEEEecC---------CeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEE-eCCCeEEEEE-
Q 002564 475 GEVVGVACDSTNTLMISAGYH---------GDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATV-ADDLVIRLFD- 543 (907)
Q Consensus 475 ~~v~~l~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~-~~dg~I~v~d- 543 (907)
...+.-.++|+|++.+-.-.| |.++.|-.. ++....+..-.--+.++|+.+.+.+... +.+-+|.-||
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 345556678999985432222 344444322 2222222222344567888877765544 4566787777
Q ss_pred -ccccee-----EEEeec---CC-CCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCc-eEEEEECCC-Cc
Q 002564 544 -VVALRM-----VRKFEG---HT-DRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPN-MD 611 (907)
Q Consensus 544 -~~~~~~-----~~~~~~---h~-~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~-v~~l~~spd-g~ 611 (907)
..+|.. +..++. .. -.--.++...+|.+.+++-..++|...|..+|+.+..+..+.+ +++++|--. -+
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d 267 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLD 267 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCcc
Confidence 555532 333332 11 1223456667888888888889999999999999999998877 999999643 33
Q ss_pred eEEEE
Q 002564 612 VLATA 616 (907)
Q Consensus 612 ~lat~ 616 (907)
.|.+.
T Consensus 268 ~~yvT 272 (310)
T KOG4499|consen 268 ILYVT 272 (310)
T ss_pred EEEEE
Confidence 44443
No 416
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.74 E-value=0.36 Score=52.26 Aligned_cols=143 Identities=15% Similarity=0.135 Sum_probs=82.4
Q ss_pred CcEEEEEEcCCCCEEEEEe-----------cCC-eEEEEECCC--Cce--eeeeec-CcceeEEEEeeCCCEEEEEeCCC
Q 002564 475 GEVVGVACDSTNTLMISAG-----------YHG-DIKVWDFKG--RDL--KSRWEV-GCSLVKIVYHRVNGLLATVADDL 537 (907)
Q Consensus 475 ~~v~~l~~s~~~~~l~s~~-----------~dg-~i~iwd~~~--~~~--~~~~~~-~~~i~~~~~s~~~~~la~~~~dg 537 (907)
.....|+|+++|+++++.. ..+ .|.+++-.+ ++. ...+.. ......+++.+++ |.+++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4567899999998877653 223 677776443 322 222322 2456788998888 44444444
Q ss_pred eEEEEEccc-------cee-EEEeec----CCCCeeeEEECCCCcEEEEEeCC-------------------CcEEEEEc
Q 002564 538 VIRLFDVVA-------LRM-VRKFEG----HTDRITDFCFSEDGKWLLSSGMD-------------------GSLRIWDV 586 (907)
Q Consensus 538 ~I~v~d~~~-------~~~-~~~~~~----h~~~I~~l~fspdg~~l~s~s~D-------------------g~I~vwd~ 586 (907)
..++.|... .+. +..+.. +......++|.|||++.++.+.. |.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 333445432 112 222322 23457789999999877755521 34555555
Q ss_pred CCCceeeEeeeCCceEEEEECCCCceEEEEEec
Q 002564 587 ILARQIDAIHVDVSITALSLSPNMDVLATAHVD 619 (907)
Q Consensus 587 ~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d 619 (907)
.+++......+......++|+|+|+++++-..+
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 544432222333447899999999988765533
No 417
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.68 E-value=0.64 Score=53.22 Aligned_cols=139 Identities=12% Similarity=0.081 Sum_probs=73.9
Q ss_pred cCCCCEEEEEecC------CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCC------CcEEEEECCCc
Q 002564 190 SPALDVVAVGCSD------GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS------GVISIWNLEKR 257 (907)
Q Consensus 190 sp~~~~la~g~~d------g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~d------g~I~iwd~~~~ 257 (907)
+..+.++++|+.+ ..+..||..++.............-.+++... |. +.++|+.+ .++..||..++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~-~~-lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN-GK-LYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC-CE-EEEEccccCCCcccceEEEecCCCC
Confidence 3345677777776 36788998887544443333333445555554 45 88888888 35778888877
Q ss_pred eeeeeeecccccCe-EEEEEecCCCEEEEEcCCCc-----EEEEEccCCCCCcceeEeccCCCCCCeEEEEec-CCCEEE
Q 002564 258 RLQSVIREAHDNAI-ISLHFFANEPVLMSASADNS-----IKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA-NGRHIL 330 (907)
Q Consensus 258 ~~~~~~~~~h~~~V-~~l~~~~~~~~l~s~~~d~~-----i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~g~~l~ 330 (907)
+-...-. -..... .+++ .-+|.+.++||.||. +-.||..+. .+...... ..+........ +|...+
T Consensus 360 ~W~~~a~-M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~--~W~~va~m---~~~r~~~gv~~~~g~iYi 432 (571)
T KOG4441|consen 360 QWTPVAP-MNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTN--KWTPVAPM---LTRRSGHGVAVLGGKLYI 432 (571)
T ss_pred ceeccCC-ccCccccceeE-EECCEEEEEeccccccccccEEEecCCCC--cccccCCC---CcceeeeEEEEECCEEEE
Confidence 6443222 111111 1222 226778888888864 455544332 23332211 11222222222 566666
Q ss_pred EEeCCCC
Q 002564 331 SAGQDRA 337 (907)
Q Consensus 331 s~~~dg~ 337 (907)
+||.++.
T Consensus 433 ~GG~~~~ 439 (571)
T KOG4441|consen 433 IGGGDGS 439 (571)
T ss_pred EcCcCCC
Confidence 7776653
No 418
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.67 E-value=4.1 Score=44.18 Aligned_cols=66 Identities=11% Similarity=0.017 Sum_probs=37.6
Q ss_pred cCeEEEEEecCCCEEEEEc-----------CCC-cEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCC
Q 002564 269 NAIISLHFFANEPVLMSAS-----------ADN-SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 336 (907)
Q Consensus 269 ~~V~~l~~~~~~~~l~s~~-----------~d~-~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg 336 (907)
.....|+|.++|+++++-. ..+ .|.+++-...++.......+......+..+++.++| |+.+....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4567888888888776643 122 565554333333333333333344567889999888 44444443
No 419
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.63 E-value=3.3 Score=42.83 Aligned_cols=148 Identities=15% Similarity=0.203 Sum_probs=78.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEEC-
Q 002564 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF- 503 (907)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~- 503 (907)
..+..+..+++|++++++.......-|+.....-...- ......|..|.|.|++.+.+.+ ..|.|++=+.
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~--------r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~ 215 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN--------RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP 215 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc--------cCccceehhceecCCCCEEEEe-CCcEEEEccCC
Confidence 66788888999999999866655566765432111111 2456789999999998766644 7888888772
Q ss_pred CCCceeee--e---ecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee---cCCCCeeeEEECCCCcEEEEE
Q 002564 504 KGRDLKSR--W---EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLSS 575 (907)
Q Consensus 504 ~~~~~~~~--~---~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~---~h~~~I~~l~fspdg~~l~s~ 575 (907)
...+.-.. . .....+..++|.+++...|+|+.. .+ +...+.|+--.+-+ .-....+.+.|.++.+-++.
T Consensus 216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l- 292 (302)
T PF14870_consen 216 DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL- 292 (302)
T ss_dssp TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred CCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-
Confidence 22211111 1 122458899999988888877643 33 33445554433332 23456788888766555554
Q ss_pred eCCCcEEEE
Q 002564 576 GMDGSLRIW 584 (907)
Q Consensus 576 s~Dg~I~vw 584 (907)
+.+|.|--|
T Consensus 293 G~~G~ll~~ 301 (302)
T PF14870_consen 293 GQDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred CCCcEEEEe
Confidence 578876544
No 420
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=1.6 Score=49.06 Aligned_cols=211 Identities=15% Similarity=0.148 Sum_probs=100.9
Q ss_pred CCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCc
Q 002564 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDP 304 (907)
Q Consensus 225 ~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~ 304 (907)
+.+-++..+|..-.-+. +..-.|+||++ +|+++..+. ...+.+..+.|+.+. .|++...+|++.+|++....-..
T Consensus 44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~-sG~lL~~~~-w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~ 118 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLY--SARPYIRIFNI-SGQLLGRIL-WKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIES 118 (829)
T ss_pred CCceEEEeccccccccc--ccceeEEEEec-cccchHHHH-hcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcc
Confidence 44445555553210111 33456899996 666666665 333489999999877 56677789999999875432111
Q ss_pred ceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeeccc
Q 002564 305 RLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEI 384 (907)
Q Consensus 305 ~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (907)
. -.-.......|..+.+..+|-.+++ .+|.+.+-.-.......++.. +. ...+++ .+..+...
T Consensus 119 ~-svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~~~~~~d---------iP----~~~~~~-~~Wt~~~~ 181 (829)
T KOG2280|consen 119 N-SVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPKLRKMPD---------IP----YNELPK-SCWTVFQP 181 (829)
T ss_pred c-ccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcchhhhCCC---------CC----CccCCC-cceeEecC
Confidence 0 0001122345666777766644443 344444332111111111100 00 000000 01110000
Q ss_pred ccccccceEEEeeC-CceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeee
Q 002564 385 RERDWCNVVTCHMD-TAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYL 463 (907)
Q Consensus 385 ~~~~~~~~~~~~~~-~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~ 463 (907)
.........-+ .--..+.-........+.+. ...+.+..+.+||++++++.-+..|.|.+-+....+....+.
T Consensus 182 ---~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~---~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 182 ---HRQSTILLDVDVAVGLHICQVEESRVQLHALS---WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ---CCcceeEEeechhhhhcccceecccccccccC---CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 00000000000 00000000001111011111 113678889999999999999999999999988777766654
No 421
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.49 E-value=4.7 Score=43.72 Aligned_cols=150 Identities=11% Similarity=0.087 Sum_probs=84.3
Q ss_pred CEEEEEEcCCCCEEEEEecCCeEEEEEccCCceE-EEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCce---
Q 002564 183 SISSCVSSPALDVVAVGCSDGKIHVHNVRYDEEL-VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR--- 258 (907)
Q Consensus 183 ~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~-~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~--- 258 (907)
....+..++++.+++++..-..++-|| .|... ..........++++.|.+++. +++++ ..|.+. |....++
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~-l~l~g-~~G~l~-~S~d~G~~~~ 314 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGG-LWLLT-RGGGLY-VSKGTGLTEE 314 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCC-EEEEe-CCceEE-EecCCCCccc
Confidence 345567788888888776533233343 33322 333333356899999999998 55544 556653 4444443
Q ss_pred --eeeeeecc-cccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCC
Q 002564 259 --LQSVIREA-HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD 335 (907)
Q Consensus 259 --~~~~~~~~-h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~d 335 (907)
........ -...+.++.|.+++..+++| ..|.+... ......+........-......+.|.++++ .+..+.+
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s--~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~ 390 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS--TDGGKSWKRDKGADNIAANLYSVKFFDDKK-GFVLGND 390 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe--CCCCcceeEccccCCCCcceeEEEEcCCCc-eEEEeCC
Confidence 12222211 22358899999887655554 56766655 222223333322233456778888877654 4455567
Q ss_pred CCEEEE
Q 002564 336 RAFRLF 341 (907)
Q Consensus 336 g~i~iw 341 (907)
|.|.-|
T Consensus 391 G~il~~ 396 (398)
T PLN00033 391 GVLLRY 396 (398)
T ss_pred cEEEEe
Confidence 766544
No 422
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.44 E-value=0.39 Score=54.26 Aligned_cols=111 Identities=11% Similarity=0.125 Sum_probs=76.4
Q ss_pred cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee-cCCCCeeeEEE--CCCCcEEEEEeCCCcEEEEEc------
Q 002564 516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-GHTDRITDFCF--SEDGKWLLSSGMDGSLRIWDV------ 586 (907)
Q Consensus 516 ~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~-~h~~~I~~l~f--spdg~~l~s~s~Dg~I~vwd~------ 586 (907)
..++.+.-+.-++..++-++...+.|||...+.....-. ...+.|.++.| .|||+.+++.|..+.|.+|--
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344445555555555555556689999999887543322 35688999988 468999999999999999843
Q ss_pred ---CCCceeeEeee----CCceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564 587 ---ILARQIDAIHV----DVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (907)
Q Consensus 587 ---~~~~~~~~~~~----~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (907)
++...+..+.. ..+|.+..|.++|.+++.++. .++|++-.
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN---qlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN---QLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC---EEEEECCC
Confidence 22334444432 346999999999987776642 48998753
No 423
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.43 E-value=0.8 Score=50.87 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=50.4
Q ss_pred ecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEEecCCeEEEeec
Q 002564 554 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVN 628 (907)
Q Consensus 554 ~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~ 628 (907)
..|.+.|.-+..+..+..|..-...-.+.++|+.+.+....+. -++-+.|-|..+.++.-+.|. +++|-+
T Consensus 334 inh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmiln---fcsymqwvp~sdvivaqn~dn--l~iwyn 403 (1636)
T KOG3616|consen 334 INHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMILN---FCSYMQWVPGSDVIVAQNGDN--LCIWYN 403 (1636)
T ss_pred ccccccccceeccchhhhhhcccccceeEEEEcccchHHHHHH---HhhhheeccCcceEEecCCCc--eEEEec
Confidence 3488888888888777777766666678888988654322221 155688999999888877775 999985
No 424
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.33 E-value=1.1 Score=51.40 Aligned_cols=228 Identities=11% Similarity=0.090 Sum_probs=113.1
Q ss_pred CCEEEEEecC------CcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecC------CcEEEEecCC
Q 002564 103 GEHILSIDID------GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE------GSLQLWNIST 170 (907)
Q Consensus 103 g~~l~s~~~d------g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~d------g~i~iwd~~~ 170 (907)
+..++.|+.+ ..+..+|..+++-. ....+ .......++..-.+ ...++|+.+ .++..||..+
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~--~~a~m--~~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWS--SLAPM--PSPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEe--ecCCC--CcccccccEEEECC--EEEEEccccCCCcccceEEEecCCC
Confidence 3444555555 34778887776431 11111 22222222333333 467778888 3567778766
Q ss_pred CeEE--EEEcCCCCCEEEEEEcCCCCEEEEEecCCe-----EEEEEccCCceEEEEeecC-CCCEEEEEEecCCCCEEEE
Q 002564 171 KKKL--YEFKGWGSSISSCVSSPALDVVAVGCSDGK-----IHVHNVRYDEELVTFTHSM-RGAVTALAFSSDGQPLLAS 242 (907)
Q Consensus 171 ~~~~--~~~~~h~~~I~~l~~sp~~~~la~g~~dg~-----I~iwd~~~~~~~~~~~~~~-~~~v~~l~fs~dg~~~l~s 242 (907)
++=. ..+........ .-.-+|.+-|+|+.||. +..||..+.+--..-.... ......+. -+|. +.++
T Consensus 359 ~~W~~~a~M~~~R~~~~--v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~-iYi~ 433 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFG--VAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGK-LYII 433 (571)
T ss_pred CceeccCCccCccccce--eEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCE-EEEE
Confidence 5511 11111111111 12236778889988854 7778877665332221111 11122222 2566 7777
Q ss_pred EeCC------CcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCc-----EEEEEccCCCCCcceeEecc
Q 002564 243 GASS------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNS-----IKMWIFDTTDGDPRLLRFRS 311 (907)
Q Consensus 243 g~~d------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~-----i~vw~~~~~~~~~~~~~~~~ 311 (907)
|+.+ ..+..||..+++....-...-...-..++. -++.+.+.||.|+. |..+|. ....+..+....
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp--~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDP--ETNQWTMVAPMT 510 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcC--CCCceeEcccCc
Confidence 7744 457788888775433322111111122333 35667788887763 445544 344455553333
Q ss_pred CCCCCCeEEEEecCCCEEEEEeCCCC-----EEEEEceec
Q 002564 312 GHSAPPLCIRFYANGRHILSAGQDRA-----FRLFSVIQD 346 (907)
Q Consensus 312 ~h~~~v~~i~~~~~g~~l~s~~~dg~-----i~iwd~~~~ 346 (907)
.....+..+.. ++...+.|+.||. +..||..++
T Consensus 511 ~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 511 SPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred cccccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 33332222222 5677788887763 555655443
No 425
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.28 E-value=6 Score=43.63 Aligned_cols=150 Identities=13% Similarity=0.147 Sum_probs=86.8
Q ss_pred CCEEEEEEcCCCCEEEEEe--cCCeEEEEEccCCceEEEEeecCCCCEEEEEEecC----CCCEEEEEeCCCcEEEEECC
Q 002564 182 SSISSCVSSPALDVVAVGC--SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSD----GQPLLASGASSGVISIWNLE 255 (907)
Q Consensus 182 ~~I~~l~~sp~~~~la~g~--~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~d----g~~~l~sg~~dg~I~iwd~~ 255 (907)
.+|..++|..-.+++.+.- .+|.+++=| .+.+..| ..|..++|.|- ...+||+- ....|.||.+.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF-----EhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF-----EHVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLC 90 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc-----ceeeeeeecCcccCCCCceEEEe-ccceEEEEEec
Confidence 4677788875444444432 234433322 1233333 35899999885 33355554 57899999875
Q ss_pred -----Cceeeeeeeccc--c--cCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCC
Q 002564 256 -----KRRLQSVIREAH--D--NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 326 (907)
Q Consensus 256 -----~~~~~~~~~~~h--~--~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g 326 (907)
.++.+....-.. . ---..+.|+|....|+.-.....-.++++...+. +..... ...+.|.|.+|.+||
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s--rVkaDi-~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS--RVKADI-KTSGLIHCACWTKDG 167 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc--eEEEec-cCCceEEEEEecCcC
Confidence 223332222011 1 1234678999998887766554444555554432 232222 556789999999999
Q ss_pred CEEEEEeCC-CCEEEEEc
Q 002564 327 RHILSAGQD-RAFRLFSV 343 (907)
Q Consensus 327 ~~l~s~~~d-g~i~iwd~ 343 (907)
+.|+.+-.. =.-++||-
T Consensus 168 ~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred CEEEEEeCCeEEEEEecC
Confidence 988876433 23456763
No 426
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.26 E-value=0.26 Score=57.50 Aligned_cols=150 Identities=7% Similarity=-0.012 Sum_probs=95.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCccceeeecc---ccccccCcCCcEEEEEEcCCC-CEEEEEecCCeE
Q 002564 425 TAVKACTISACGNFAVLGTAGG--WIERFNLQSGISRGSYLDM---SERSNYAHNGEVVGVACDSTN-TLMISAGYHGDI 498 (907)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~dg--~i~i~d~~~~~~~~~~~~~---~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i 498 (907)
..+..+.+.+|+...++-.... .|+.||+.+-......... .............++.|.|.- ...+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 4566677777876655544333 7888998754332211100 000111223445677787754 234566678888
Q ss_pred EEEECCCC-ceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecC----CCCeeeEEECCCCcEEE
Q 002564 499 KVWDFKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH----TDRITDFCFSEDGKWLL 573 (907)
Q Consensus 499 ~iwd~~~~-~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h----~~~I~~l~fspdg~~l~ 573 (907)
++..+.-. .....+......++++|+|.|+.+++|..+|++.-|... ++..+.+.+. ..+|.+++|-..-.|++
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 88876533 333445666889999999999999999999999888643 4444444332 36799999988777777
Q ss_pred EE
Q 002564 574 SS 575 (907)
Q Consensus 574 s~ 575 (907)
+-
T Consensus 260 vy 261 (1405)
T KOG3630|consen 260 VY 261 (1405)
T ss_pred Ee
Confidence 53
No 427
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.22 E-value=1 Score=51.60 Aligned_cols=150 Identities=13% Similarity=0.183 Sum_probs=97.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCccce------eeeccccc--------cccCcCCcEEEEEEcC--CCCEEEEEecCCeEE
Q 002564 436 GNFAVLGTAGGWIERFNLQSGISRG------SYLDMSER--------SNYAHNGEVVGVACDS--TNTLMISAGYHGDIK 499 (907)
Q Consensus 436 g~~l~~g~~dg~i~i~d~~~~~~~~------~~~~~~~~--------~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~ 499 (907)
+++++++. .+.|.+|+........ .+...+.. ........|+.|.+.. +...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 77788765 7789999986543321 11100000 0001223466666654 346889999999999
Q ss_pred EEECCC-------C-------------ceeeeeecCcceeEEEEe--eCCCEEEEEeCCCeEEEEEcccc--ee-EEEee
Q 002564 500 VWDFKG-------R-------------DLKSRWEVGCSLVKIVYH--RVNGLLATVADDLVIRLFDVVAL--RM-VRKFE 554 (907)
Q Consensus 500 iwd~~~-------~-------------~~~~~~~~~~~i~~~~~s--~~~~~la~~~~dg~I~v~d~~~~--~~-~~~~~ 554 (907)
+|..++ . ++...+..+...+.++++ ...++||+++....|.||-.... +. ...-.
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 996521 0 122333455788999999 88899999999998888865432 11 11111
Q ss_pred cCCCCeeeEEECCCC------cEEEEEeCCCcEEEEEc
Q 002564 555 GHTDRITDFCFSEDG------KWLLSSGMDGSLRIWDV 586 (907)
Q Consensus 555 ~h~~~I~~l~fspdg------~~l~s~s~Dg~I~vwd~ 586 (907)
.|...|.+|+|-++. .+|++++-.|.+.+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 256779999997743 27888999999999888
No 428
>PRK10115 protease 2; Provisional
Probab=95.19 E-value=9.1 Score=45.25 Aligned_cols=60 Identities=13% Similarity=0.049 Sum_probs=39.1
Q ss_pred CCEEEEEEecCCCCEEEEE-eCC----CcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcC
Q 002564 225 GAVTALAFSSDGQPLLASG-ASS----GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA 288 (907)
Q Consensus 225 ~~v~~l~fs~dg~~~l~sg-~~d----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~ 288 (907)
-.+..+.++|||+ +|+.+ +.+ ..|++.|+.++..+.... ... -..++|.+|++.|+.+..
T Consensus 127 ~~l~~~~~Spdg~-~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~--~~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 127 YTLGGMAITPDNT-IMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNV--EPSFVWANDSWTFYYVRK 191 (686)
T ss_pred EEEeEEEECCCCC-EEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCc--ceEEEEeeCCCEEEEEEe
Confidence 3567788999999 55544 333 368899998886433322 111 256999999986666544
No 429
>PHA03098 kelch-like protein; Provisional
Probab=95.17 E-value=0.66 Score=53.44 Aligned_cols=187 Identities=11% Similarity=0.056 Sum_probs=85.1
Q ss_pred eeCCEEEEEecCC------cEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecC-----CcEEEEecC
Q 002564 101 LFGEHILSIDIDG------NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE-----GSLQLWNIS 169 (907)
Q Consensus 101 ~~g~~l~s~~~dg------~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~d-----g~i~iwd~~ 169 (907)
.++..++.|+.++ .+..||..+.+-.. +..+..+.. ...+..-++ ...+.|+.+ ..+..||..
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~--~~~~~~~R~--~~~~~~~~~--~lyv~GG~~~~~~~~~v~~yd~~ 366 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK--VPELIYPRK--NPGVTVFNN--RIYVIGGIYNSISLNTVESWKPG 366 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE--CCCCCcccc--cceEEEECC--EEEEEeCCCCCEecceEEEEcCC
Confidence 4455555555432 46677776654421 111111111 112222344 456667654 347778876
Q ss_pred CCeEEE--EEcCCCCCEEEEEEcCCCCEEEEEecC------CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEE
Q 002564 170 TKKKLY--EFKGWGSSISSCVSSPALDVVAVGCSD------GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLA 241 (907)
Q Consensus 170 ~~~~~~--~~~~h~~~I~~l~~sp~~~~la~g~~d------g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~ 241 (907)
+++=.. .+....... ++ ..-++++.+.|+.+ ..+..||..+++-...-... .......+...++. +.+
T Consensus 367 ~~~W~~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~~~~~-iyv 442 (534)
T PHA03098 367 ESKWREEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP-ISHYGGCAIYHDGK-IYV 442 (534)
T ss_pred CCceeeCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC-ccccCceEEEECCE-EEE
Confidence 653221 111111111 11 22356666777632 45888998876533221111 11111112233555 667
Q ss_pred EEeCC--------CcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCC-----CcEEEEEcc
Q 002564 242 SGASS--------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD-----NSIKMWIFD 298 (907)
Q Consensus 242 sg~~d--------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-----~~i~vw~~~ 298 (907)
.|+.+ ..+.+||..+++-...-.......-.+++. -++..++.||.+ +.+.+||.+
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~ 511 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDK 511 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCC
Confidence 77643 238889988775433221111111112222 266677777654 345555544
No 430
>PRK13684 Ycf48-like protein; Provisional
Probab=95.17 E-value=5.4 Score=42.48 Aligned_cols=149 Identities=13% Similarity=0.086 Sum_probs=85.3
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 002564 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK 504 (907)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 504 (907)
..+..+.+.+++.++++|. .|.+..-.-..++.-.... ..-...+.++.+.++++.++.+ ..|.+++=..+
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~-------~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d 243 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQ-------RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD 243 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEee-------CCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC
Confidence 5678888999887776654 4544432111222122221 2344678999999998876654 45776543334
Q ss_pred CCceeeeeec-----CcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee---cCCCCeeeEEECCCCcEEEEEe
Q 002564 505 GRDLKSRWEV-----GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLSSG 576 (907)
Q Consensus 505 ~~~~~~~~~~-----~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~---~h~~~I~~l~fspdg~~l~s~s 576 (907)
.+..-..... ...+..+.+.+++..++++ .+|.+. .....++.-.... +-....+.+.|..+++.++ ++
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G 320 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LG 320 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-EC
Confidence 4432222111 2457788899887766655 456554 3344444333332 2224577888887777666 45
Q ss_pred CCCcEEEEE
Q 002564 577 MDGSLRIWD 585 (907)
Q Consensus 577 ~Dg~I~vwd 585 (907)
..|.|--|+
T Consensus 321 ~~G~il~~~ 329 (334)
T PRK13684 321 QRGVLLRYV 329 (334)
T ss_pred CCceEEEec
Confidence 678887775
No 431
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.08 E-value=0.074 Score=37.17 Aligned_cols=35 Identities=9% Similarity=0.158 Sum_probs=30.4
Q ss_pred ecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccce
Q 002564 513 EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR 548 (907)
Q Consensus 513 ~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~ 548 (907)
.....|.+++|+|...++|.++.+|.|.+|.+ +++
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 34467999999999999999999999999988 444
No 432
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.92 E-value=6.2 Score=41.95 Aligned_cols=64 Identities=11% Similarity=0.116 Sum_probs=40.0
Q ss_pred CCeeeEEECC-------CCcEEEEEeCCCcEEEEEcCCCceee-Eee----eCCceEEEEECCCCceEEEEEecCC
Q 002564 558 DRITDFCFSE-------DGKWLLSSGMDGSLRIWDVILARQID-AIH----VDVSITALSLSPNMDVLATAHVDQN 621 (907)
Q Consensus 558 ~~I~~l~fsp-------dg~~l~s~s~Dg~I~vwd~~~~~~~~-~~~----~~~~v~~l~~spdg~~lat~~~d~~ 621 (907)
..++.+.|-. .|.++++.-..+.|....+..+..+. .-. ....+..+++.|||.+.++...++.
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~ 328 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGK 328 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTT
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCe
Confidence 4566777753 45567766666778887876443332 211 1225999999999999998887774
No 433
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.87 E-value=0.026 Score=63.49 Aligned_cols=156 Identities=17% Similarity=0.208 Sum_probs=94.9
Q ss_pred cCcCCcEEEEEEcCCC-CEEEEEecCCeEEEEECC--CCceeeeeec------CcceeEEEEee---CCCEEEEEeCCCe
Q 002564 471 YAHNGEVVGVACDSTN-TLMISAGYHGDIKVWDFK--GRDLKSRWEV------GCSLVKIVYHR---VNGLLATVADDLV 538 (907)
Q Consensus 471 ~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~--~~~~~~~~~~------~~~i~~~~~s~---~~~~la~~~~dg~ 538 (907)
++..+.|-.+.|.... ..+. -.-|.+.|||+. .|+....+.. ...+..+.|.| +..++.++..++.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 3666777777774321 1111 223678889875 4444333321 24445555554 6678888888999
Q ss_pred EEEEEcccceeEEEeecCCCCeeeEE-----------ECCCCcEEEEEeCCCcEEEEEcC-CC----ceeeEeeeCC--c
Q 002564 539 IRLFDVVALRMVRKFEGHTDRITDFC-----------FSEDGKWLLSSGMDGSLRIWDVI-LA----RQIDAIHVDV--S 600 (907)
Q Consensus 539 I~v~d~~~~~~~~~~~~h~~~I~~l~-----------fspdg~~l~s~s~Dg~I~vwd~~-~~----~~~~~~~~~~--~ 600 (907)
|++..+++... ..+.+|...+++++ .||||+.++.++.||.+++|.+. +| +|+...+.|. +
T Consensus 207 i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p 285 (1283)
T KOG1916|consen 207 IRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHP 285 (1283)
T ss_pred eeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCC
Confidence 99887765432 34556877766554 58999999999999999999764 22 3444444343 2
Q ss_pred -eEEEEECCC---------CceEEEEEecCCeEEEeeccc
Q 002564 601 -ITALSLSPN---------MDVLATAHVDQNGVYLWVNRC 630 (907)
Q Consensus 601 -v~~l~~spd---------g~~lat~~~d~~~i~lW~~~~ 630 (907)
|..+ +..+ -.++++++.-++.+++|.-..
T Consensus 286 ~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 286 RVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred ceeee-eccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 3333 3221 235666666666799997543
No 434
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=94.87 E-value=12 Score=44.95 Aligned_cols=147 Identities=18% Similarity=0.132 Sum_probs=77.3
Q ss_pred CEEEEEeC---------CCcEEEEeCCC-----CccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEE
Q 002564 437 NFAVLGTA---------GGWIERFNLQS-----GISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWD 502 (907)
Q Consensus 437 ~~l~~g~~---------dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 502 (907)
.++++|+. .|.+++||+-. |++...... ........+++|..++=- +|.++ ++. ...|.+|+
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~Kl-Kel~~eE~KGtVsavceV-~G~l~-~~~-GqKI~v~~ 1122 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKL-KELYIEEQKGTVSAVCEV-RGHLL-SSQ-GQKIIVRK 1122 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCccccee-eeeehhhcccceEEEEEe-ccEEE-Ecc-CcEEEEEE
Confidence 57888863 58999999632 222111100 000012455677766533 45444 333 35789999
Q ss_pred CC-CCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccc-eeEEEeec--CCCCeeeEEECCCCc--EEEEEe
Q 002564 503 FK-GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVAL-RMVRKFEG--HTDRITDFCFSEDGK--WLLSSG 576 (907)
Q Consensus 503 ~~-~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~-~~~~~~~~--h~~~I~~l~fspdg~--~l~s~s 576 (907)
++ ...++..--..-++.-.....-.+++..|.--..|.+.-.+.. ..+.-+.. ..-.+.++.|--||. +++++.
T Consensus 1123 l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsD 1202 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSD 1202 (1366)
T ss_pred eccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEc
Confidence 84 4443322222222322222333566777766666666554432 11222221 123477778877775 567788
Q ss_pred CCCcEEEEEcC
Q 002564 577 MDGSLRIWDVI 587 (907)
Q Consensus 577 ~Dg~I~vwd~~ 587 (907)
.|++|++|-..
T Consensus 1203 a~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1203 ADRNIHVYMYA 1213 (1366)
T ss_pred CCCcEEEEEeC
Confidence 89999998654
No 435
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.85 E-value=9.3 Score=43.58 Aligned_cols=392 Identities=11% Similarity=0.099 Sum_probs=169.2
Q ss_pred ccEEEEcCCCCCCEEEEEecCCcEEEEecCC--------CeEE-EEEcCCCCCEEEEEEcC-----CCCEEEEE--ecCC
Q 002564 140 TPTCIMHPDTYLNKVIVGSQEGSLQLWNIST--------KKKL-YEFKGWGSSISSCVSSP-----ALDVVAVG--CSDG 203 (907)
Q Consensus 140 ~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~--------~~~~-~~~~~h~~~I~~l~~sp-----~~~~la~g--~~dg 203 (907)
...+++.|.+ +.++++..+|.+.++.++. ...+ ..+ .....|..++|-. +...+|+- ...+
T Consensus 46 G~~l~vDP~~--R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi-~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~ 122 (504)
T PF10433_consen 46 GQYLAVDPSG--RCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPI-KSEGNILDMCFLHPSVGYDNPTLAILYVDSQR 122 (504)
T ss_dssp --EEEE-TTS--SEEEEEEBTTEEEEEE-SS----T-TT---EEEE---S-SEEEEEEEES---S-SS-EEEEEEEETT-
T ss_pred CcEEEECCcC--CEEEEEecCCeEEEEEecccccccccccccccccc-cCCceEEEEEEEecccCCCCceEEEEEEEecc
Confidence 4568899999 8999999999999998877 1111 111 1256778888875 22344432 2222
Q ss_pred --eEEEEEccCCceEEE----------EeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEE-CCCc---eeeeeeec--
Q 002564 204 --KIHVHNVRYDEELVT----------FTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN-LEKR---RLQSVIRE-- 265 (907)
Q Consensus 204 --~I~iwd~~~~~~~~~----------~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd-~~~~---~~~~~~~~-- 265 (907)
.+..|+......+.. +......+..-+....... .+++++. + +.+|. .... .....+..
T Consensus 123 ~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~g-gllV~~~-~-~i~y~~~~~~~~~~~~~~~~~~~ 199 (504)
T PF10433_consen 123 RTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPG-GLLVGGE-N-IIIYKNHLIGSGDYSFLSIPSPP 199 (504)
T ss_dssp EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT--SEEEEES-S-EEEEEE------TTEEEEE--H-
T ss_pred cceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCc-EEEEECC-E-EEEEecccccccccccccccCCc
Confidence 244444222221111 1111112222222222222 3444442 3 33443 2111 11111110
Q ss_pred -ccccCeEEEEE-------ecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCC-CCCCeEEEEecCC-CEEEEEeCC
Q 002564 266 -AHDNAIISLHF-------FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH-SAPPLCIRFYANG-RHILSAGQD 335 (907)
Q Consensus 266 -~h~~~V~~l~~-------~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~g-~~l~s~~~d 335 (907)
....-+.+..+ ..++..++.+..+|.+....+..... .+....-+. .....++.+..+| .+++.|+.-
T Consensus 200 ~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~--~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~ 277 (504)
T PF10433_consen 200 SSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGG--SISITYLGTLCSIASSLTYLKNGGDYLFVGSEF 277 (504)
T ss_dssp HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEE--EEEEEEEEE--S-ESEEEEESTT--EEEEEESS
T ss_pred cCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCC--eEEEEEcCCcCChhheEEEEcCCCEEEEEEEec
Confidence 11222333332 34567888899999998887765432 212222233 5566777777655 467777765
Q ss_pred CCEEEEEce--ecccceeechhhhhHHHhhccchhhhcccCceeEeeeccccccccc------ceEEEeeC--CceEEEE
Q 002564 336 RAFRLFSVI--QDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWC------NVVTCHMD--TAQAYVW 405 (907)
Q Consensus 336 g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~--~~~v~~w 405 (907)
|.=.++.+. .-.... .-....|+..+........... .+++|... .+.+++.
T Consensus 278 gds~l~~~~~~~l~~~~------------------~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~l 339 (504)
T PF10433_consen 278 GDSQLLQISLSNLEVLD------------------SLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRIL 339 (504)
T ss_dssp S-EEEEEEESESEEEEE------------------EE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEE
T ss_pred CCcEEEEEeCCCcEEEE------------------eccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEE
Confidence 544444333 111121 2234678888877654333333 66666543 4566655
Q ss_pred Eeeeceec-ceeeecCCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEeCC---CCccceeeeccccccccCcCCcEEEE
Q 002564 406 RLQNFVLG-EHILRPCPENPTAVKACTISA-CGNFAVLGTAGGWIERFNLQ---SGISRGSYLDMSERSNYAHNGEVVGV 480 (907)
Q Consensus 406 ~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~i~d~~---~~~~~~~~~~~~~~~~~~h~~~v~~l 480 (907)
+..-...+ .......++ ...+..+.... ++.++++...+. -.++.+. .......... . ........+.+-
T Consensus 340 r~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~S~~~~-T~vl~~~~~d~~e~~~e~~~-~--~f~~~~~Tl~~~ 414 (504)
T PF10433_consen 340 RNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVLSFPNE-TRVLQISEGDDGEEVEEVEE-D--GFDTDEPTLAAG 414 (504)
T ss_dssp EESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEEEESSE-EEEEEES----SSEEEEE------TS-SSS-EEEEE
T ss_pred eccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEEEcCCc-eEEEEEecccCCcchhhhhh-c--cCCCCCCCeEEE
Confidence 43211110 011111111 12333333322 246777766554 3444443 2222211100 0 000111122222
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC--cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee-c--
Q 002564 481 ACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE-G-- 555 (907)
Q Consensus 481 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~-~-- 555 (907)
.+. +..++=... ..|++.+...++....+... ..|.+.+. ++.+++++..++.+..+.+.......... .
T Consensus 415 ~~~--~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (504)
T PF10433_consen 415 NVG--DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETI 489 (504)
T ss_dssp EET--TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----
T ss_pred EcC--CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeecccc
Confidence 222 333333332 45788888777777766554 34444444 46778888888999999988776643322 1
Q ss_pred --CCCCeeeEEECC
Q 002564 556 --HTDRITDFCFSE 567 (907)
Q Consensus 556 --h~~~I~~l~fsp 567 (907)
....|.++..+|
T Consensus 490 ~~~~~eis~l~i~p 503 (504)
T PF10433_consen 490 LELDNEISCLSIEP 503 (504)
T ss_dssp EE-SS-EEEEE---
T ss_pred ccCCCceEEEEeCC
Confidence 457788887766
No 436
>PHA03098 kelch-like protein; Provisional
Probab=94.74 E-value=0.94 Score=52.20 Aligned_cols=186 Identities=6% Similarity=-0.011 Sum_probs=86.4
Q ss_pred CEEEEEecCC------cEEEEecCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEecC-----CeEEEEEccCCceEEE
Q 002564 152 NKVIVGSQEG------SLQLWNISTKKKLYE--FKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDEELVT 218 (907)
Q Consensus 152 ~~l~~~s~dg------~i~iwd~~~~~~~~~--~~~h~~~I~~l~~sp~~~~la~g~~d-----g~I~iwd~~~~~~~~~ 218 (907)
..+++|+.++ .+..||..+.+-... +.........+ .-++.+.+.|+.+ ..+..||..+++-...
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 3455565432 577788776654221 11111112222 2356677777765 3577888776653221
Q ss_pred EeecCCCCEEEEEEecCCCCEEEEEeCC------CcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCC--
Q 002564 219 FTHSMRGAVTALAFSSDGQPLLASGASS------GVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADN-- 290 (907)
Q Consensus 219 ~~~~~~~~v~~l~fs~dg~~~l~sg~~d------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~-- 290 (907)
-..+....-.+++ .-++. +.+.|+.+ ..+..||..+++-...-.......-.++ ...++...+.||.++
T Consensus 374 ~~lp~~r~~~~~~-~~~~~-iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~ 450 (534)
T PHA03098 374 PPLIFPRYNPCVV-NVNNL-IYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGISYID 450 (534)
T ss_pred CCcCcCCccceEE-EECCE-EEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCccCCC
Confidence 1111111111222 23555 67777632 4588999887654332210011111122 233566667776432
Q ss_pred ------cEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCC-----CCEEEEEceec
Q 002564 291 ------SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD-----RAFRLFSVIQD 346 (907)
Q Consensus 291 ------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~d-----g~i~iwd~~~~ 346 (907)
.+.+| +..+..+..+............+.+ +++.++.||.+ +.+.+||..+.
T Consensus 451 ~~~~~~~v~~y--d~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 451 NIKVYNIVESY--NPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCcccceEEEe--cCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 24444 4444444443322211111122222 66677777654 35777776554
No 437
>PRK10115 protease 2; Provisional
Probab=94.67 E-value=12 Score=44.17 Aligned_cols=117 Identities=10% Similarity=0.089 Sum_probs=70.0
Q ss_pred CCEEEEEEcCCCCEEEEEecC-----CeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCC-----CcEEE
Q 002564 182 SSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASS-----GVISI 251 (907)
Q Consensus 182 ~~I~~l~~sp~~~~la~g~~d-----g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~d-----g~I~i 251 (907)
-.+..+.+||++++|+.+... ..|++.|+.+|+.+...... .. ..++|++|++.++.+...+ ..|..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VE-PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cc-eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 346678899999998876432 45889999888644332222 12 5699999998555554422 46888
Q ss_pred EECCCc--eeeeeeecccccCeE-EEEEecCCCEEEEEcC---CCcEEEEEccCCCC
Q 002564 252 WNLEKR--RLQSVIREAHDNAII-SLHFFANEPVLMSASA---DNSIKMWIFDTTDG 302 (907)
Q Consensus 252 wd~~~~--~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~~~---d~~i~vw~~~~~~~ 302 (907)
+++.++ +....+. ....... ....+.++++++..+. ++.+.+++.+...+
T Consensus 204 h~lgt~~~~d~lv~~-e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~ 259 (686)
T PRK10115 204 HTIGTPASQDELVYE-EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA 259 (686)
T ss_pred EECCCChhHCeEEEe-eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC
Confidence 898888 3333333 2222233 3333447776554433 45677777544433
No 438
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.63 E-value=0.9 Score=47.72 Aligned_cols=157 Identities=15% Similarity=0.183 Sum_probs=98.0
Q ss_pred CCeEEEEEcCCCC------CEEEEEEcCCCCEEEEEecCCeEEEEEcc--CCceEEEEeecCCCCEEEEEEecCCCCEEE
Q 002564 170 TKKKLYEFKGWGS------SISSCVSSPALDVVAVGCSDGKIHVHNVR--YDEELVTFTHSMRGAVTALAFSSDGQPLLA 241 (907)
Q Consensus 170 ~~~~~~~~~~h~~------~I~~l~~sp~~~~la~g~~dg~I~iwd~~--~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~ 241 (907)
+|..-+.+..|.. .-+.+-|....+.| .+...|.+.=|-.+ +......+.....++|.++.|++|.+ .+|
T Consensus 5 sGalyhelihhPslfcnipesngvFfDDaNkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilA 82 (657)
T KOG2377|consen 5 SGALYHELIHHPSLFCNIPESNGVFFDDANKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILA 82 (657)
T ss_pred CcceEEEEecCchhhccCCcccceeeccCcceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEE
Confidence 4444455544432 12333344333333 33344555555544 23445556655578999999999999 999
Q ss_pred EEeCCCcEEEEECCCceeeeeee---cccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCe
Q 002564 242 SGASSGVISIWNLEKRRLQSVIR---EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPL 318 (907)
Q Consensus 242 sg~~dg~I~iwd~~~~~~~~~~~---~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~ 318 (907)
+--.++.|.+++....+...... ......|.+..|+.+ .-++..+. ..+-+|...... +.++....|...|.
T Consensus 83 VQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~-~G~e~y~v~pek---rslRlVks~~~nvn 157 (657)
T KOG2377|consen 83 VQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITD-QGIEFYQVLPEK---RSLRLVKSHNLNVN 157 (657)
T ss_pred EEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEec-CCeEEEEEchhh---hhhhhhhhcccCcc
Confidence 99999999999984443322221 133456889999877 44555543 347777666543 44555668889999
Q ss_pred EEEEecCCCEEEEEe
Q 002564 319 CIRFYANGRHILSAG 333 (907)
Q Consensus 319 ~i~~~~~g~~l~s~~ 333 (907)
-..|+++.+.++-++
T Consensus 158 Wy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 158 WYMYCPETAVILLST 172 (657)
T ss_pred EEEEccccceEeeec
Confidence 999999877665443
No 439
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.59 E-value=0.74 Score=52.12 Aligned_cols=108 Identities=16% Similarity=0.253 Sum_probs=73.3
Q ss_pred EEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeec--CcceeEEEEe--eCCCEEEEEeCCCeEEEEEcc-------
Q 002564 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEV--GCSLVKIVYH--RVNGLLATVADDLVIRLFDVV------- 545 (907)
Q Consensus 477 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~i~~~~~s--~~~~~la~~~~dg~I~v~d~~------- 545 (907)
.+-+.-+.-++..++-+....+.|||...+.+...-.. ...|..+.|. |+++.+.+.+-.+.|.+|--.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 34444455555555555556899999998876655444 6899999886 578877777778888888432
Q ss_pred --cceeEEEe--ecCC-CCeeeEEECCCCcEEEEEeCCCcEEEEEc
Q 002564 546 --ALRMVRKF--EGHT-DRITDFCFSEDGKWLLSSGMDGSLRIWDV 586 (907)
Q Consensus 546 --~~~~~~~~--~~h~-~~I~~l~fspdg~~l~s~s~Dg~I~vwd~ 586 (907)
+...++++ ..|+ .+|.+..|.++|.+++.+ +..+.|+|-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 22334433 3455 689999999999766644 345888864
No 440
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.28 E-value=12 Score=43.96 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=20.2
Q ss_pred CCEEEEEEcCCCCEEEEEecCCeEEE
Q 002564 182 SSISSCVSSPALDVVAVGCSDGKIHV 207 (907)
Q Consensus 182 ~~I~~l~~sp~~~~la~g~~dg~I~i 207 (907)
-.|..+.++|+|++||..+..|.+.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 45788889999999998888664443
No 441
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.26 E-value=9.9 Score=41.35 Aligned_cols=258 Identities=13% Similarity=0.120 Sum_probs=138.3
Q ss_pred CCeEEEEEEeCCeEEEEEcCcce----EEEecCCCCcceEEEEEec-----CeEEEEE--cCeEEEEeC----Ce-----
Q 002564 25 GTENFVTVSVGKAFHIYNCAKLN----LVLVGPQLPKKIRALASYR-----DYTFAAY--GNHIAVVKR----AH----- 84 (907)
Q Consensus 25 ~~~~~~~~~~~~~v~iwd~~~~~----~~~~~~~~~~~I~~la~~~-----~~~~~a~--g~~I~vw~~----~~----- 84 (907)
+.+.++++|..|.++||+..... -+..-.....+|-.|+..+ +...+|. -.++.||.. +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 46799999999999999997543 2333346678898887542 2223333 344777753 11
Q ss_pred --eEEEEcccccceEEE--E--ee-----CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCE
Q 002564 85 --QVATWSRHSAKVNLL--L--LF-----GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNK 153 (907)
Q Consensus 85 --~~~~~~~h~~~V~~l--~--~~-----g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 153 (907)
.+.....|.-.-++. . ++ -++|+.-+.||.+.+++-+.... ...+.. --.....++.+.. +.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f----~~~lp~-~llPgPl~Y~~~t--Ds 188 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF----SRFLPD-FLLPGPLCYCPRT--DS 188 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE----EEEcCC-CCCCcCeEEeecC--CE
Confidence 122334443332222 2 22 26788889999999999766443 111111 1112234466666 67
Q ss_pred EEEEecCCcEEEEecCC--------------------Ce---EEEEEcCCCCCEEEEE---EcCCCCEEEEEecCCeEEE
Q 002564 154 VIVGSQEGSLQLWNIST--------------------KK---KLYEFKGWGSSISSCV---SSPALDVVAVGCSDGKIHV 207 (907)
Q Consensus 154 l~~~s~dg~i~iwd~~~--------------------~~---~~~~~~~h~~~I~~l~---~sp~~~~la~g~~dg~I~i 207 (907)
+++++.+..+.-|.... ++ ..+++.- +..+..+. ++.....+++-++ .++.+
T Consensus 189 fvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLge-r~Lf~ 266 (418)
T PF14727_consen 189 FVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLGE-RSLFC 266 (418)
T ss_pred EEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEec-ceEEE
Confidence 88888888888876421 11 1122222 33343333 3333333444443 45666
Q ss_pred EEccCCceEEEEeecCCCCEEEEEEec------CCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEE---ec
Q 002564 208 HNVRYDEELVTFTHSMRGAVTALAFSS------DGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHF---FA 278 (907)
Q Consensus 208 wd~~~~~~~~~~~~~~~~~v~~l~fs~------dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~---~~ 278 (907)
.+. +|......+.. -.+...+.|.. +....+++++.++++.||.= .+++...+..|. + .++.. ..
T Consensus 267 l~~-~G~l~~~krLd-~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~~-P-Val~v~~~~~ 340 (418)
T PF14727_consen 267 LKD-NGSLRFQKRLD-YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPHV-P-VALSVANFNG 340 (418)
T ss_pred EcC-CCeEEEEEecC-CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCCC-C-EEEEecccCC
Confidence 664 45544444332 22233333332 22224788889999999973 333333331122 2 23332 22
Q ss_pred CCCEEEEEcCCCcEEEEEc
Q 002564 279 NEPVLMSASADNSIKMWIF 297 (907)
Q Consensus 279 ~~~~l~s~~~d~~i~vw~~ 297 (907)
-...+++-+.+|.+.+-=+
T Consensus 341 ~~G~IV~Ls~~G~L~v~YL 359 (418)
T PF14727_consen 341 LKGLIVSLSDEGQLSVSYL 359 (418)
T ss_pred CCceEEEEcCCCcEEEEEe
Confidence 2347888888888887644
No 442
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.20 E-value=0.44 Score=55.70 Aligned_cols=188 Identities=14% Similarity=0.093 Sum_probs=112.0
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccc--------ccccc-CcCCcEEEEEEcCCCCEEEEE--ecCC
Q 002564 428 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMS--------ERSNY-AHNGEVVGVACDSTNTLMISA--GYHG 496 (907)
Q Consensus 428 ~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~-~h~~~v~~l~~s~~~~~l~s~--~~dg 496 (907)
..++.++.-..++++...+.+.++-..+-.....-.+.. ..... .....+..+.+.+|+...++. +.+-
T Consensus 45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~ 124 (1405)
T KOG3630|consen 45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE 124 (1405)
T ss_pred hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence 445666666667777777766666543321111100000 00011 123456667777776554433 3445
Q ss_pred eEEEEECCCCceee--------e----eecCcceeEEEEeeCC-CEEEEEeCCCeEEEEEccccee-EEEeecCCCCeee
Q 002564 497 DIKVWDFKGRDLKS--------R----WEVGCSLVKIVYHRVN-GLLATVADDLVIRLFDVVALRM-VRKFEGHTDRITD 562 (907)
Q Consensus 497 ~i~iwd~~~~~~~~--------~----~~~~~~i~~~~~s~~~-~~la~~~~dg~I~v~d~~~~~~-~~~~~~h~~~I~~ 562 (907)
.|.+||+.+-..-. . +.-..-..++.|.|.- ...++...|+.|+|..+..... +..+. -....++
T Consensus 125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Ta 203 (1405)
T KOG3630|consen 125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTA 203 (1405)
T ss_pred eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceee
Confidence 78999987542211 1 1111344566777743 3456677888998887654322 22222 4567899
Q ss_pred EEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeee-----CCceEEEEECCCCceEEEEE
Q 002564 563 FCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-----DVSITALSLSPNMDVLATAH 617 (907)
Q Consensus 563 l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-----~~~v~~l~~spdg~~lat~~ 617 (907)
++|+|.|+.++.|-..|++.-|. ++++....+.. ...|.+++|-....||++-+
T Consensus 204 v~WSprGKQl~iG~nnGt~vQy~-P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 204 VLWSPRGKQLFIGRNNGTEVQYE-PSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred EEeccccceeeEecCCCeEEEee-cccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 99999999999999999998887 34554444432 23599999998888887643
No 443
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.56 E-value=5.4 Score=45.16 Aligned_cols=200 Identities=12% Similarity=0.130 Sum_probs=103.3
Q ss_pred EeCCeEEEEEcCcceEEEecCCCCcceEEEEEecCeEEEEE--cCeEEEEeCCeeEEEE--cc---cccceEEEEeeCCE
Q 002564 33 SVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAY--GNHIAVVKRAHQVATW--SR---HSAKVNLLLLFGEH 105 (907)
Q Consensus 33 ~~~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~~~~~a~--g~~I~vw~~~~~~~~~--~~---h~~~V~~l~~~g~~ 105 (907)
+.--.|+||+....-+-...-.| .++-.|.|+.+..++.. .+.++||+.-.+.... .| -...|....+.++-
T Consensus 61 ~a~~~I~If~~sG~lL~~~~w~~-~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 61 SARPYIRIFNISGQLLGRILWKH-GELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred ccceeEEEEeccccchHHHHhcC-CCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc
Confidence 33445777775543322222223 38889999999777655 5568998854332222 11 22334444455555
Q ss_pred EEEEecCCcEEEEe-cCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEE-e-cCCcEEEEecCCC-eEEEEEcCCC
Q 002564 106 ILSIDIDGNMFIWA-FKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVG-S-QEGSLQLWNISTK-KKLYEFKGWG 181 (907)
Q Consensus 106 l~s~~~dg~v~vWd-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~-s-~dg~i~iwd~~~~-~~~~~~~~h~ 181 (907)
++.-..+|.+.+-+ .+...... ...+++......+-.+.++.+...++.. . ..+ ..+.-...+ ...+.+....
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~--~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~ 216 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRK--MPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPN 216 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhh--CCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCC
Confidence 55555566654432 22211110 0111111111011112222211112111 0 111 111221111 1222233324
Q ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCC
Q 002564 182 SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDG 236 (907)
Q Consensus 182 ~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg 236 (907)
+.+..+..||+.++||--..+|.|.+-+.+..+....+......+...++|..+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 6788999999999999999999999999998888888875544555577776655
No 444
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.51 E-value=19 Score=43.82 Aligned_cols=163 Identities=18% Similarity=0.311 Sum_probs=90.0
Q ss_pred cCCcEEEEecCCCeEEEEEcCCCCCEEEEEE--------cCCCCEEEEEecCCeEEEEEccCCceE-------EEEeecC
Q 002564 159 QEGSLQLWNISTKKKLYEFKGWGSSISSCVS--------SPALDVVAVGCSDGKIHVHNVRYDEEL-------VTFTHSM 223 (907)
Q Consensus 159 ~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~--------sp~~~~la~g~~dg~I~iwd~~~~~~~-------~~~~~~~ 223 (907)
.|+.+.+||++++.....+.+-...|..+.. -|.-+++.+-..--.|.++-+.-++.. ..+....
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 5678999999998888888877777776653 344444444444456666655422211 1111111
Q ss_pred -CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCC
Q 002564 224 -RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 302 (907)
Q Consensus 224 -~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~ 302 (907)
...|.|+....+|+ ++.+ |.|| .+|.+. ++ +-.+.-.. ...+.-.+.+.-..+.
T Consensus 177 dg~~V~~I~~t~nGR-IF~~-G~dg--~lyEl~-------Yq-~~~gWf~~----rc~Kiclt~s~ls~lv--------- 231 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGR-IFFA-GRDG--NLYELV-------YQ-AEDGWFGS----RCRKICLTKSVLSSLV--------- 231 (1311)
T ss_pred CCceEEEEEeccCCc-EEEe-ecCC--CEEEEE-------Ee-ccCchhhc----ccccccCchhHHHHhh---------
Confidence 34677777777776 4444 4455 445431 11 11111000 0001111111100000
Q ss_pred CcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecc
Q 002564 303 DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ 347 (907)
Q Consensus 303 ~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~ 347 (907)
+.++.....+..+|..+.....-..+++-+..|++++|++..+.
T Consensus 232 -Ps~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 232 -PSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred -hhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCC
Confidence 11122223677899999999888889999999999999998744
No 445
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.49 E-value=8.4 Score=39.89 Aligned_cols=159 Identities=17% Similarity=0.271 Sum_probs=93.7
Q ss_pred EEEEEEcCCCCEEEEE-ec-----------CCeEEEEECCCCceeeeeecC-------cceeEEEEeeCC-----CEEEE
Q 002564 477 VVGVACDSTNTLMISA-GY-----------HGDIKVWDFKGRDLKSRWEVG-------CSLVKIVYHRVN-----GLLAT 532 (907)
Q Consensus 477 v~~l~~s~~~~~l~s~-~~-----------dg~i~iwd~~~~~~~~~~~~~-------~~i~~~~~s~~~-----~~la~ 532 (907)
|.++.+++++++-+.= |. .-.|.+||+.+++.++++..+ +.+..+.+.... .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 5566666666544321 11 126888999999988887654 456677777632 24444
Q ss_pred EeC-CCeEEEEEcccceeEEEeecCC-------------------CCeeeEEECC---CCcEEEEEeCCCcEEEEEcCCC
Q 002564 533 VAD-DLVIRLFDVVALRMVRKFEGHT-------------------DRITDFCFSE---DGKWLLSSGMDGSLRIWDVILA 589 (907)
Q Consensus 533 ~~~-dg~I~v~d~~~~~~~~~~~~h~-------------------~~I~~l~fsp---dg~~l~s~s~Dg~I~vwd~~~~ 589 (907)
+.. .+.|.|+|+.+++..+.+..+. +.+..++.+| +|++|.-....+ -++|.+++.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence 433 3589999999988766654322 2255666655 777777666544 345555432
Q ss_pred c--------------eeeEeee-CCceEEEEECCCCceEEEEEecCCeEEEeecccccccCCC
Q 002564 590 R--------------QIDAIHV-DVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSN 637 (907)
Q Consensus 590 ~--------------~~~~~~~-~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~~~~~~~~~ 637 (907)
- .+..+-. ......++++++|....+--... .|..|+....|.+...
T Consensus 162 ~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~-aI~~w~~~~~~~~~~~ 223 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQN-AIGCWDPDGPYTPENF 223 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCT-EEEEEETTTSB-GCCE
T ss_pred HhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCC-eEEEEeCCCCcCccch
Confidence 1 1122211 13467889999888777766665 7999999887776544
No 446
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.17 E-value=4.3 Score=38.33 Aligned_cols=176 Identities=14% Similarity=0.057 Sum_probs=100.1
Q ss_pred eCCEEEEEecCC--cEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcC
Q 002564 102 FGEHILSIDIDG--NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKG 179 (907)
Q Consensus 102 ~g~~l~s~~~dg--~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~ 179 (907)
+|..+.+.+.-| .|++||+.+++. +.+.+........--+..-+. ......-.+|.-..+|..+.+++..+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~----~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQE----IFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSY 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceE----EEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhccccc
Confidence 466666766644 499999998887 444443311111111111120 1223344678888999999888877653
Q ss_pred CCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEee----cCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 002564 180 WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH----SMRGAVTALAFSSDGQPLLASGASSGVISIWNLE 255 (907)
Q Consensus 180 h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~----~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~ 255 (907)
. +.=+.+ ..|++.|..+.....+..-|.++-....++.. ..-..+..+.|- ||. +.|---.+..|...+.+
T Consensus 130 ~-GeGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~-lyANVw~t~~I~rI~p~ 204 (262)
T COG3823 130 E-GEGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGE-LYANVWQTTRIARIDPD 204 (262)
T ss_pred C-Ccceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccE-EEEeeeeecceEEEcCC
Confidence 2 222333 34555677776667787778776554443332 112234445554 455 44444455566667777
Q ss_pred Cceeeeeee-----------cccccCeEEEEEecCCCEEEEEc
Q 002564 256 KRRLQSVIR-----------EAHDNAIISLHFFANEPVLMSAS 287 (907)
Q Consensus 256 ~~~~~~~~~-----------~~h~~~V~~l~~~~~~~~l~s~~ 287 (907)
+|+.+..+. ..|.+-.+.+++.|++..++..+
T Consensus 205 sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 205 SGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 776665554 23556678899999885444443
No 447
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.16 E-value=14 Score=39.43 Aligned_cols=200 Identities=15% Similarity=0.181 Sum_probs=111.4
Q ss_pred cEEEEcCCCCC-CEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEc----CCCCE--EEEEe-cC---CeEEEEE
Q 002564 141 PTCIMHPDTYL-NKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSS----PALDV--VAVGC-SD---GKIHVHN 209 (907)
Q Consensus 141 ~~~~~~p~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~s----p~~~~--la~g~-~d---g~I~iwd 209 (907)
..+.++|.... .+|+....++-+.+||+ .|+.++.+.. +.++.+..- -.|+. ||+++ .+ ..|++|.
T Consensus 57 PAIWvnp~dp~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~ 133 (381)
T PF02333_consen 57 PAIWVNPADPAKSLIIGTDKKGGLYVYDL-DGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFR 133 (381)
T ss_dssp EEEE--SS-GGG-EEEEEETTTEEEEEET-TS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEE
T ss_pred CcEecCCCCcccceEEEEeCCCCEEEEcC-CCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEE
Confidence 44556654432 35666667788999998 6777777753 445544432 13332 44444 32 4799998
Q ss_pred ccCC-ceEEEEeec------CCCCEEEEEEe--c-CCCCEEEEEeCCCcEEEEECC---Cc----eeeeeeecccccCeE
Q 002564 210 VRYD-EELVTFTHS------MRGAVTALAFS--S-DGQPLLASGASSGVISIWNLE---KR----RLQSVIREAHDNAII 272 (907)
Q Consensus 210 ~~~~-~~~~~~~~~------~~~~v~~l~fs--~-dg~~~l~sg~~dg~I~iwd~~---~~----~~~~~~~~~h~~~V~ 272 (907)
+... ..+..+... .-..++.+|+- + +|..++++...+|.+.-|.+. .+ ++++.+. -.+.+.
T Consensus 134 id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~E 211 (381)
T PF02333_consen 134 IDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQPE 211 (381)
T ss_dssp EETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EE
T ss_pred ecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcce
Confidence 8632 233333211 11346777764 3 466577778889988888764 33 4455555 345788
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEEccCCCCC-cceeEecc--CCCCCCeEEEEec--CC-CEE-EEEeCCCCEEEEEcee
Q 002564 273 SLHFFANEPVLMSASADNSIKMWIFDTTDGD-PRLLRFRS--GHSAPPLCIRFYA--NG-RHI-LSAGQDRAFRLFSVIQ 345 (907)
Q Consensus 273 ~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~-~~~~~~~~--~h~~~v~~i~~~~--~g-~~l-~s~~~dg~i~iwd~~~ 345 (907)
.|........|..+-.+.-|.-|+.+...+. .+++.... +....+-.++... ++ .+| +|.-.+++..+|+...
T Consensus 212 GCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 212 GCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 8998888889999988865555555544332 23333332 2456788888764 33 244 4555677899999753
No 448
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.12 E-value=23 Score=41.99 Aligned_cols=87 Identities=10% Similarity=0.176 Sum_probs=56.2
Q ss_pred eeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEee---cCCCCeeeEEECCCC------cEEEEEeCCCcE
Q 002564 511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFE---GHTDRITDFCFSEDG------KWLLSSGMDGSL 581 (907)
Q Consensus 511 ~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~---~h~~~I~~l~fspdg------~~l~s~s~Dg~I 581 (907)
++..+..+.-+.-.-+...++++..+|.+.-+.......+..+. .-...|.++++.++. ++++.++.|+++
T Consensus 533 ew~~P~~~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~v 612 (1205)
T KOG1898|consen 533 EWKTPERVRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMV 612 (1205)
T ss_pred cccCCCceEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccce
Confidence 33444444444444445677777777877766654332233332 224568889998865 689999999999
Q ss_pred EEEEcCCCceeeEeee
Q 002564 582 RIWDVILARQIDAIHV 597 (907)
Q Consensus 582 ~vwd~~~~~~~~~~~~ 597 (907)
++..+....++..+..
T Consensus 613 riisL~p~d~l~~ls~ 628 (1205)
T KOG1898|consen 613 RIISLDPSDCLQPLSV 628 (1205)
T ss_pred eEEEecCcceEEEccc
Confidence 9999987666666543
No 449
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.04 E-value=13 Score=39.61 Aligned_cols=118 Identities=11% Similarity=0.072 Sum_probs=71.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 002564 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503 (907)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 503 (907)
.++|.++.||+|.+.+++--.+..|.+++....+....+.... +..+..|.+..|+... -++..... -+-+|-.
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c----k~k~~~IlGF~W~~s~-e~A~i~~~-G~e~y~v 139 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC----KTKNANILGFCWTSST-EIAFITDQ-GIEFYQV 139 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHh----ccCcceeEEEEEecCe-eEEEEecC-CeEEEEE
Confidence 3789999999999999999999999999986554443332100 1233458899998764 34443332 3445543
Q ss_pred CCC-ceeeee-ecCcceeEEEEeeCCCEEEEEe--CCCeEEEEEcccc
Q 002564 504 KGR-DLKSRW-EVGCSLVKIVYHRVNGLLATVA--DDLVIRLFDVVAL 547 (907)
Q Consensus 504 ~~~-~~~~~~-~~~~~i~~~~~s~~~~~la~~~--~dg~I~v~d~~~~ 547 (907)
... +.++.. .+...|.-..|.++.+.+..++ ..+++.=+-+.++
T Consensus 140 ~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 140 LPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred chhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 321 112222 3346788888888887544443 3444444444443
No 450
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.96 E-value=2.2 Score=45.58 Aligned_cols=142 Identities=15% Similarity=0.187 Sum_probs=91.9
Q ss_pred CEEE-EEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCC-------EEEEEecCCeEEEEEccC-CceEEEEeec
Q 002564 152 NKVI-VGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD-------VVAVGCSDGKIHVHNVRY-DEELVTFTHS 222 (907)
Q Consensus 152 ~~l~-~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~-------~la~g~~dg~I~iwd~~~-~~~~~~~~~~ 222 (907)
+.|+ .|.....++-.|++.|+.+-....|..- -+.|.|+.+ .-++|-.+..|.-.|.+- |..+......
T Consensus 480 sli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esK 557 (776)
T COG5167 480 SLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESK 557 (776)
T ss_pred ceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeeh
Confidence 3444 4566677888899999999999887665 566777532 234555666666566553 3222222110
Q ss_pred ---CCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccC
Q 002564 223 ---MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT 299 (907)
Q Consensus 223 ---~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~ 299 (907)
.+....|..-...| ++|+|+..|.|++||--.-+....++ +....|..+..+.+|.++++.+. ..+.+-|+..
T Consensus 558 dY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rAKtalP-~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 558 DYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAKTALP-GLGDAIKHIDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred hccccccccccccccCc--eEEEecCCCceeeehhhcchhhhcCc-ccccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence 01223333333344 79999999999999965555555555 88889999999999998887764 4566665543
No 451
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.93 E-value=12 Score=38.02 Aligned_cols=236 Identities=12% Similarity=0.137 Sum_probs=127.5
Q ss_pred CeEEEEEecCCCEEEEEcCCCcEEEEEccCCC--C-CcceeEeccC-----CCCCCeEEEEecCCCE------------E
Q 002564 270 AIISLHFFANEPVLMSASADNSIKMWIFDTTD--G-DPRLLRFRSG-----HSAPPLCIRFYANGRH------------I 329 (907)
Q Consensus 270 ~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~--~-~~~~~~~~~~-----h~~~v~~i~~~~~g~~------------l 329 (907)
.-+.|+++|.+.+-++....+...+||.+... + ...++-.... ....++.+.|+....+ +
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45789999999888888778899999876221 1 1122222221 2346788888754333 5
Q ss_pred EEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeee
Q 002564 330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN 409 (907)
Q Consensus 330 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~ 409 (907)
+.+++||+|.-|...-+..... ..+.+.|-.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~------------------------------------------------~~~~~~d~s- 134 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMT------------------------------------------------RAEIVVDAS- 134 (336)
T ss_pred EEEeCCceEEeecCcCCccccc------------------------------------------------ccEEEEccC-
Confidence 6677778887776422111000 000000000
Q ss_pred ceecceeeecCCCCCCceEEEEEc--CCCCEEEEE-eCCCcEEEEeCCCCccc--eeeecccccccc--------CcCCc
Q 002564 410 FVLGEHILRPCPENPTAVKACTIS--ACGNFAVLG-TAGGWIERFNLQSGISR--GSYLDMSERSNY--------AHNGE 476 (907)
Q Consensus 410 ~~~~~~~~~~~~~~~~~v~~~~~s--~~g~~l~~g-~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~--------~h~~~ 476 (907)
......+.+++- ..+++|..+ -.+|+|.+||-.-.... ..+.++....-. +..-.
T Consensus 135 ------------~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~ly 202 (336)
T TIGR03118 135 ------------QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLY 202 (336)
T ss_pred ------------CCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEE
Confidence 001222334443 335555544 46789999986543321 112211110000 00011
Q ss_pred EEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC---cceeEEEEee------CCCEEEEEeCCCeEEEEEcccc
Q 002564 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHR------VNGLLATVADDLVIRLFDVVAL 547 (907)
Q Consensus 477 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~------~~~~la~~~~dg~I~v~d~~~~ 547 (907)
|+-..-+++...=+.+..-|.|-++|.. +++++++... ...+.++..| .+.+|+---.||+|..||..++
T Consensus 203 VtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 203 VTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred EEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence 1222223333323334445789999965 6677766554 4456677655 4667777778999999999999
Q ss_pred eeEEEeecCCC------CeeeEEECC
Q 002564 548 RMVRKFEGHTD------RITDFCFSE 567 (907)
Q Consensus 548 ~~~~~~~~h~~------~I~~l~fsp 567 (907)
+.+..+....+ ....|+|-.
T Consensus 282 ~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 282 AQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred ceeeeecCCCCCeEEecCeEEeeeCC
Confidence 98888775443 345666654
No 452
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.84 E-value=4.8 Score=46.29 Aligned_cols=104 Identities=11% Similarity=0.141 Sum_probs=73.6
Q ss_pred CEEEEEeCCCcEEEEECCCc--------------------eeeeeeecccccCeEEEEEe--cCCCEEEEEcCCCcEEEE
Q 002564 238 PLLASGASSGVISIWNLEKR--------------------RLQSVIREAHDNAIISLHFF--ANEPVLMSASADNSIKMW 295 (907)
Q Consensus 238 ~~l~sg~~dg~I~iwd~~~~--------------------~~~~~~~~~h~~~V~~l~~~--~~~~~l~s~~~d~~i~vw 295 (907)
.+|+.+..||.|.+|.+++- ++...+ .-...+++++++ ...+++|+++....|.||
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~--~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL--RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe--ecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 38999999999999965210 011122 234578999998 788889999888999999
Q ss_pred EccCCCCCcceeEeccCCCCCCeEEEEecCC---C---EEEEEeCCCCEEEEEce
Q 002564 296 IFDTTDGDPRLLRFRSGHSAPPLCIRFYANG---R---HILSAGQDRAFRLFSVI 344 (907)
Q Consensus 296 ~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g---~---~l~s~~~dg~i~iwd~~ 344 (907)
-+...+....... ...|...|.+|+|.++. . .+++++-.|.+.+|++.
T Consensus 193 af~l~~~r~~~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 193 AFALVDERFYHVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEecccccccccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 8776432222211 22467789999998732 2 77888999999999883
No 453
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.62 E-value=13 Score=37.72 Aligned_cols=242 Identities=12% Similarity=0.103 Sum_probs=127.1
Q ss_pred CEEEEEEecCCCCEEEEEeCCCcEEEEECC------Cc-eeeeeeec--c--cccCeEEEEEecCCC------------E
Q 002564 226 AVTALAFSSDGQPLLASGASSGVISIWNLE------KR-RLQSVIRE--A--HDNAIISLHFFANEP------------V 282 (907)
Q Consensus 226 ~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~------~~-~~~~~~~~--~--h~~~V~~l~~~~~~~------------~ 282 (907)
.-..|+|+|.+. +-++....+...+||.. .. .++..+.. + .....+.+.|+.... .
T Consensus 24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 457899999987 66666677899999986 11 23333331 1 234677888774322 3
Q ss_pred EEEEcCCCcEEEEEccCCCCC--cceeEeccCCCCCC-eEEEEec--CCCEEEEE-eCCCCEEEEEceecccceeechhh
Q 002564 283 LMSASADNSIKMWIFDTTDGD--PRLLRFRSGHSAPP-LCIRFYA--NGRHILSA-GQDRAFRLFSVIQDQQSRELSQRH 356 (907)
Q Consensus 283 l~s~~~d~~i~vw~~~~~~~~--~~~~~~~~~h~~~v-~~i~~~~--~g~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~ 356 (907)
++.+++||+|.-|.-...... ...+..-.+....| ..+++.. .+.+|+.+ -..++|.+||-.-.+... . +
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~--~-g- 178 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL--P-G- 178 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC--C-C-
Confidence 677889999999964322210 11111111212222 3444443 34455444 356778888643221100 0 0
Q ss_pred hhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCC
Q 002564 357 VAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACG 436 (907)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 436 (907)
...-+.+ ......-++...+ +. -.|+-..-.+++
T Consensus 179 -------------~F~DP~i-------PagyAPFnIqnig---~~-----------------------lyVtYA~qd~~~ 212 (336)
T TIGR03118 179 -------------SFIDPAL-------PAGYAPFNVQNLG---GT-----------------------LYVTYAQQDADR 212 (336)
T ss_pred -------------CccCCCC-------CCCCCCcceEEEC---Ce-----------------------EEEEEEecCCcc
Confidence 0000000 0000000000000 00 112222223334
Q ss_pred CEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcC------CCCEEEEEecCCeEEEEECCCCceee
Q 002564 437 NFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS------TNTLMISAGYHGDIKVWDFKGRDLKS 510 (907)
Q Consensus 437 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~------~~~~l~s~~~dg~i~iwd~~~~~~~~ 510 (907)
+.=+.|..-|.|.+||+.. ..++.+.. .+.-....+|+..| .+.+|+---.||+|..+|..+++.+.
T Consensus 213 ~d~v~G~G~G~VdvFd~~G-~l~~r~as------~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g 285 (336)
T TIGR03118 213 NDEVAGAGLGYVNVFTLNG-QLLRRVAS------SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLG 285 (336)
T ss_pred cccccCCCcceEEEEcCCC-cEEEEecc------CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceee
Confidence 4444555667888998764 44444421 24455677888765 45677766689999999999988776
Q ss_pred eeecC-------cceeEEEEee
Q 002564 511 RWEVG-------CSLVKIVYHR 525 (907)
Q Consensus 511 ~~~~~-------~~i~~~~~s~ 525 (907)
.+... ..++.+.|..
T Consensus 286 ~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 286 QLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eecCCCCCeEEecCeEEeeeCC
Confidence 66543 4566677755
No 454
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.43 E-value=0.024 Score=59.54 Aligned_cols=134 Identities=16% Similarity=0.166 Sum_probs=94.0
Q ss_pred cEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEE-ecCCeEEEEEccCCceEEEE
Q 002564 141 PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVG-CSDGKIHVHNVRYDEELVTF 219 (907)
Q Consensus 141 ~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g-~~dg~I~iwd~~~~~~~~~~ 219 (907)
....+-|.+ .-+++++.+..+..|| +.++....... .+....++|..+++.+++. -..+.+.+||+.+... .++
T Consensus 38 i~~~w~~e~--~nlavaca~tiv~~YD-~agq~~le~n~-tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqL 112 (615)
T KOG2247|consen 38 IIHRWRPEG--HNLAVACANTIVIYYD-KAGQVILELNP-TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQL 112 (615)
T ss_pred ceeeEecCC--CceehhhhhhHHHhhh-hhcceecccCC-chhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHH
Confidence 344566776 4488888888899998 45555555544 5566778898888876654 4568999999975432 122
Q ss_pred eecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCC
Q 002564 220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEP 281 (907)
Q Consensus 220 ~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 281 (907)
..+....-.-+.|++.+. .++.|...|.+.|++..+.+.+...- .|...++++++.+.+.
T Consensus 113 E~gg~~s~sll~wsKg~~-el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd~ 172 (615)
T KOG2247|consen 113 ESGGTSSKSLLAWSKGTP-ELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLEDY 172 (615)
T ss_pred hccCcchHHHHhhccCCc-cccccccccceEEEeccchhhhhhhc-ccccceeEEEecccce
Confidence 211122222378888877 78888899999999988877666553 4999999999988774
No 455
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.05 E-value=6.2 Score=44.29 Aligned_cols=78 Identities=9% Similarity=0.055 Sum_probs=50.0
Q ss_pred CcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEE
Q 002564 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR 551 (907)
Q Consensus 472 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~ 551 (907)
.|.+.|.-+..+..+..|+--...-.+.++|+.+.+....+ .-.+-+.|-|.+..++.-+.|+...-|+++-.+.+.
T Consensus 335 nh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil---nfcsymqwvp~sdvivaqn~dnl~iwyn~d~peqvt 411 (1636)
T KOG3616|consen 335 NHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL---NFCSYMQWVPGSDVIVAQNGDNLCIWYNIDAPEQVT 411 (1636)
T ss_pred cccccccceeccchhhhhhcccccceeEEEEcccchHHHHH---HHhhhheeccCcceEEecCCCceEEEecCCcchhhe
Confidence 68888888888877766766666677888898876543322 223456788877777766665444344555444443
Q ss_pred E
Q 002564 552 K 552 (907)
Q Consensus 552 ~ 552 (907)
.
T Consensus 412 ~ 412 (1636)
T KOG3616|consen 412 M 412 (1636)
T ss_pred e
Confidence 3
No 456
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.70 E-value=6.1 Score=37.37 Aligned_cols=161 Identities=12% Similarity=0.060 Sum_probs=100.8
Q ss_pred CCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEEE-EEecCCeEEEEECCCCceeeeeecCcceeEEEE
Q 002564 445 GGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMI-SAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 523 (907)
Q Consensus 445 dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~ 523 (907)
...|++||+.+|+...+.... ...+.+=-...-+.++. -.-.+|.-..+|..+.+.+..+...+.-+.++.
T Consensus 67 ~S~ir~~~L~~gq~~~s~~l~--------~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgLt~ 138 (262)
T COG3823 67 FSKIRVSDLTTGQEIFSEKLA--------PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWGLTS 138 (262)
T ss_pred cceeEEEeccCceEEEEeecC--------CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcceeeec
Confidence 348999999999887765421 11222211122233332 334678888999999998888887776666655
Q ss_pred eeCCCEEEEEeCCCeEEEEEcccceeEEEee----cC-CCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeC
Q 002564 524 HRVNGLLATVADDLVIRLFDVVALRMVRKFE----GH-TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD 598 (907)
Q Consensus 524 s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~----~h-~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~ 598 (907)
|+.-|..+.....++.-|.++.....+.. |. -..++.+.|- ||...|-.-.+..|..-|..+|+.+..+...
T Consensus 139 --d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS 215 (262)
T COG3823 139 --DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLS 215 (262)
T ss_pred --CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEcc
Confidence 45557777666788888877665443332 21 1334445554 5666665556666777788888888777531
Q ss_pred -------------CceEEEEECCCCceEEEE
Q 002564 599 -------------VSITALSLSPNMDVLATA 616 (907)
Q Consensus 599 -------------~~v~~l~~spdg~~lat~ 616 (907)
.-...+++.|++..+...
T Consensus 216 ~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT 246 (262)
T COG3823 216 GLLKELNLDKSNDNVLNGIAHDPQQDRFLIT 246 (262)
T ss_pred CCchhcCccccccccccceeecCcCCeEEEe
Confidence 126788999887444443
No 457
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.43 E-value=22 Score=37.77 Aligned_cols=161 Identities=15% Similarity=0.147 Sum_probs=93.0
Q ss_pred CceEEEEEcCCCCEEEEEeCCCc------EEEEeCCCC-ccceeeeccccccccC--------cCCcEEEEEEcCCCCEE
Q 002564 425 TAVKACTISACGNFAVLGTAGGW------IERFNLQSG-ISRGSYLDMSERSNYA--------HNGEVVGVACDSTNTLM 489 (907)
Q Consensus 425 ~~v~~~~~s~~g~~l~~g~~dg~------i~i~d~~~~-~~~~~~~~~~~~~~~~--------h~~~v~~l~~s~~~~~l 489 (907)
+..+.+.+.+++..+++-+.+|. ++.+++... .............+.. -.....+|++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 67888999966555666666776 666665541 0111110000000001 11145588888888888
Q ss_pred EEEecC------CeEEEEECCCCceeeeee----------------cCcceeEEEEeeCCCEEEEEeC-----CC--e--
Q 002564 490 ISAGYH------GDIKVWDFKGRDLKSRWE----------------VGCSLVKIVYHRVNGLLATVAD-----DL--V-- 538 (907)
Q Consensus 490 ~s~~~d------g~i~iwd~~~~~~~~~~~----------------~~~~i~~~~~s~~~~~la~~~~-----dg--~-- 538 (907)
++.-.+ ..|..++.. |+....+. .......++++|+|+.|.++.+ |+ .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 877777 778888866 55544331 2356789999999996666543 22 1
Q ss_pred -----EEE--EEccc-ceeEE----Eeec-----CCCCeeeEEECCCCcEEEEE-----eCCCcEEEEEc
Q 002564 539 -----IRL--FDVVA-LRMVR----KFEG-----HTDRITDFCFSEDGKWLLSS-----GMDGSLRIWDV 586 (907)
Q Consensus 539 -----I~v--~d~~~-~~~~~----~~~~-----h~~~I~~l~fspdg~~l~s~-----s~Dg~I~vwd~ 586 (907)
+++ ||..+ ++... .+.. ....|+.+.+-+++++|+-= +....++|+.+
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV 248 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence 444 45444 22222 2332 35678999999999987732 13445666644
No 458
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.35 E-value=11 Score=36.26 Aligned_cols=103 Identities=17% Similarity=0.273 Sum_probs=63.1
Q ss_pred CEEEEEecCCeEEEEEccCC--ceEEEEeecCCCCEEEEEEecCCCCEEEEEeCC---C---cEEEE-ECCC----ceee
Q 002564 194 DVVAVGCSDGKIHVHNVRYD--EELVTFTHSMRGAVTALAFSSDGQPLLASGASS---G---VISIW-NLEK----RRLQ 260 (907)
Q Consensus 194 ~~la~g~~dg~I~iwd~~~~--~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~d---g---~I~iw-d~~~----~~~~ 260 (907)
+.|.++...+.|.+|++... +.+.+|.. -+.|..+.++..|+ ++++--.+ . .+++| |++. ...+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T--v~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST--VGRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc--hhheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 45655566788999999833 44555554 48899999999999 67765322 2 55665 2221 1111
Q ss_pred e---------------------eeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCC
Q 002564 261 S---------------------VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTT 300 (907)
Q Consensus 261 ~---------------------~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~ 300 (907)
. .+...-..++.+++..|-..-|+.|+ ++.+.+|.+...
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 1 11112234667788887554556665 468999976544
No 459
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.31 E-value=0.024 Score=59.56 Aligned_cols=148 Identities=14% Similarity=0.217 Sum_probs=103.4
Q ss_pred EEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeee
Q 002564 184 ISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI 263 (907)
Q Consensus 184 I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~ 263 (907)
-....|.|.+.-+++++.+..+..||-. ++....... .+....++|..+|...++.+-..+.+.+||+.+......-
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~--tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNP--TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhh-cceecccCC--chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 3445677777779999999999999844 555544443 4677889999988856666778899999999766332222
Q ss_pred ecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEEEEEeCCCCEEE
Q 002564 264 REAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340 (907)
Q Consensus 264 ~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~i 340 (907)
. +-...-.-+.|++..+.++.+...+.+.+++..+. +.......|...++++++.+.+ +.+.++.|..+.+
T Consensus 114 ~-gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts----R~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v 184 (615)
T KOG2247|consen 114 S-GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS----RRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSV 184 (615)
T ss_pred c-cCcchHHHHhhccCCccccccccccceEEEeccch----hhhhhhcccccceeEEEecccc-eeeecCcHHHHHH
Confidence 1 22222223789999999999988999999976544 3333333399999999999876 5666666655443
No 460
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=91.10 E-value=10 Score=42.02 Aligned_cols=168 Identities=16% Similarity=0.220 Sum_probs=68.8
Q ss_pred EEEEEecC--eEEEEEcCeEEEEeCC---------eeEEEE-cccccceEEEEeeCCEEEEEecCCcEEEEecCCCCccc
Q 002564 60 RALASYRD--YTFAAYGNHIAVVKRA---------HQVATW-SRHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENL 127 (907)
Q Consensus 60 ~~la~~~~--~~~~a~g~~I~vw~~~---------~~~~~~-~~h~~~V~~l~~~g~~l~s~~~dg~v~vWd~~~~~~~~ 127 (907)
..+.+.+. .-++++++++++|+-. .....+ .++...+.++ ++.....|.|+.|+--+.....
T Consensus 29 ~~~gi~~e~g~Aw~~~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v------~lv~p~~G~v~f~~~I~~~l~~ 102 (422)
T PF08801_consen 29 CSMGIFPEIGRAWIVVDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV------GLVKPKTGRVVFWESISHLLVL 102 (422)
T ss_dssp -EEEEE-TTSEEEEEETTEEEEEE--SS--GG--EEEEE-----------SE------EEEE-TT-EEEEES-TT-TT--
T ss_pred eEEEEEcccCEEEEEECCEEEEEeccCCCCCcCcccccceecCCCCCCCceE------EEEEcCCCCEEecccchhhhhc
Confidence 34445554 5667889999999852 222233 4444544444 4455668999999865443321
Q ss_pred cceeeE---------ecCCC-cccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCCCCCEEEEEEcCCCCEEE
Q 002564 128 APVGHV---------KLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVA 197 (907)
Q Consensus 128 ~~~~~~---------~~~~~-~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la 197 (907)
.....+ ..... .....-..|.+ +++++.+|+|.....+....++.+.- .+...
T Consensus 103 ~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~----~I~~ts~GRif~~~~~~~~g~~~l~y----------~~~~~--- 165 (422)
T PF08801_consen 103 ATPSQISLLGVSYSELLSGELSTSLTNVEPSG----FIVSTSTGRIFFLGIRDSNGKYELSY----------QQLSG--- 165 (422)
T ss_dssp EEEE------------------EEEEEEETTT----EEEEETT--EEEEEE-TTS-EEEEE-----------TT------
T ss_pred CccccccccccceeeecCCceEEECCCCceEE----EEEECCCCeEEEEeCCCCCCcEEEEE----------EcCcC---
Confidence 111111 01111 11122244444 67777777777776655333333322 11110
Q ss_pred EEecCCeEEEEEccCCceEEE-E--eecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCc
Q 002564 198 VGCSDGKIHVHNVRYDEELVT-F--THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKR 257 (907)
Q Consensus 198 ~g~~dg~I~iwd~~~~~~~~~-~--~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~ 257 (907)
.....+...+..... + .......|.+++..+..+ ++++...+|.|.+|++..+
T Consensus 166 ------~~~~i~~~~~~~~~~~~p~~~~~~~~I~~v~~d~~r~-~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 166 ------RCSKINHTSSSIFSSLLPSFSDPRPKIVQVAVDPSRR-LLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --------------------------------EEEEEEETTTT-EEEEEESSE-EEEEEE-SS
T ss_pred ------CccccccccCceeccccCCcccchhceeeEEecCCcC-EEEEEeCCCcEEEEEEeCC
Confidence 000000000000000 0 111123488888888776 9999999999999999753
No 461
>PHA02790 Kelch-like protein; Provisional
Probab=91.05 E-value=6.7 Score=44.28 Aligned_cols=131 Identities=10% Similarity=0.015 Sum_probs=61.7
Q ss_pred CEEEEEecC--CcEEEEecCCCeEEEEEcCCCCCE-EEEEEcCCCCEEEEEecCC---eEEEEEccCCceEEEEeecCCC
Q 002564 152 NKVIVGSQE--GSLQLWNISTKKKLYEFKGWGSSI-SSCVSSPALDVVAVGCSDG---KIHVHNVRYDEELVTFTHSMRG 225 (907)
Q Consensus 152 ~~l~~~s~d--g~i~iwd~~~~~~~~~~~~h~~~I-~~l~~sp~~~~la~g~~dg---~I~iwd~~~~~~~~~~~~~~~~ 225 (907)
...++|+.+ ..+..||..+++=.. +..-..+. ...+..-+|++.++|+.++ .+..||..+++-...-......
T Consensus 320 ~iYviGG~~~~~sve~ydp~~n~W~~-~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r 398 (480)
T PHA02790 320 KLYVVGGLPNPTSVERWFHGDAAWVN-MPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH 398 (480)
T ss_pred EEEEECCcCCCCceEEEECCCCeEEE-CCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc
Confidence 445566643 357788876543221 11111111 1122233567777777553 4678888766543221111011
Q ss_pred CEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCC
Q 002564 226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASAD 289 (907)
Q Consensus 226 ~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d 289 (907)
-...+..-+|. +.+.| |.+.+||.++++-...-...+...-.+++. -++++.+.||.+
T Consensus 399 -~~~~~~~~~~~-IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~ 456 (480)
T PHA02790 399 -YKSCALVFGRR-LFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELII-VDNKLLLIGGFY 456 (480)
T ss_pred -ccceEEEECCE-EEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEE-ECCEEEEECCcC
Confidence 11112234565 66666 357889988775443222111111122232 356677777654
No 462
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.04 E-value=1.1 Score=30.41 Aligned_cols=32 Identities=25% Similarity=0.542 Sum_probs=26.7
Q ss_pred CCEEEEEEcCCC---CEEEEEecCCeEEEEEccCC
Q 002564 182 SSISSCVSSPAL---DVVAVGCSDGKIHVHNVRYD 213 (907)
Q Consensus 182 ~~I~~l~~sp~~---~~la~g~~dg~I~iwd~~~~ 213 (907)
+.|.+|.|||+. ++|+.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 58888888899999999853
No 463
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.81 E-value=11 Score=33.19 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=74.6
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcC-----CCCEEEEEecCCeEEEEECCC
Q 002564 431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS-----TNTLMISAGYHGDIKVWDFKG 505 (907)
Q Consensus 431 ~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-----~~~~l~s~~~dg~i~iwd~~~ 505 (907)
.|......|++++..|.|.+++.........-.. .....-.-...|++++..+ ....|+.|+ ...+..||...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~-~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQD-SDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCcccccccccc-CceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence 3444456788889999999998765432221000 0000013456788887654 235566655 47889999998
Q ss_pred CceeeeeecCcceeEEEEeeC---CCEEEEEeCCCeEEEEEcccceeEEEe
Q 002564 506 RDLKSRWEVGCSLVKIVYHRV---NGLLATVADDLVIRLFDVVALRMVRKF 553 (907)
Q Consensus 506 ~~~~~~~~~~~~i~~~~~s~~---~~~la~~~~dg~I~v~d~~~~~~~~~~ 553 (907)
...+...+.+..+.++.+-.- ..-++..+.+..|.-||.+..+...+.
T Consensus 83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred CchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 887777677788888877542 234444555667887877665555443
No 464
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.69 E-value=1.1 Score=44.09 Aligned_cols=63 Identities=21% Similarity=0.302 Sum_probs=48.2
Q ss_pred ECCCCcEEEEEeCCCcEEEEEcCCCceeeEe---------------eeCCceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564 565 FSEDGKWLLSSGMDGSLRIWDVILARQIDAI---------------HVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (907)
Q Consensus 565 fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~---------------~~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (907)
+..++.+|++.+.+|.+++||+.+++.+..- .....|.++.++.+|.-+++-+. + ..|.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g-~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-G-DSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-C-CEEEeccc
Confidence 4557889999999999999999998765332 12234899999999988887765 4 38999853
No 465
>PHA02790 Kelch-like protein; Provisional
Probab=90.67 E-value=11 Score=42.53 Aligned_cols=180 Identities=7% Similarity=-0.057 Sum_probs=85.0
Q ss_pred cCCeEEEEEEeC-----CeEEEEEcCcceEEEecCCC-CcceEEEEEecCeEEEEEcC----eEEEEeCCeeEEE----E
Q 002564 24 LGTENFVTVSVG-----KAFHIYNCAKLNLVLVGPQL-PKKIRALASYRDYTFAAYGN----HIAVVKRAHQVAT----W 89 (907)
Q Consensus 24 ~~~~~~~~~~~~-----~~v~iwd~~~~~~~~~~~~~-~~~I~~la~~~~~~~~a~g~----~I~vw~~~~~~~~----~ 89 (907)
.++..+++|+.+ .++..||..+++-....+-. +..-.+++...+..|++.|. .+..|+..+..-. +
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 456667777653 35778999887655544221 22223344445555555542 2777775432111 2
Q ss_pred cccccceEEEEeeCCEEEEEecCC---cEEEEecCCCCccccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEE
Q 002564 90 SRHSAKVNLLLLFGEHILSIDIDG---NMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLW 166 (907)
Q Consensus 90 ~~h~~~V~~l~~~g~~l~s~~~dg---~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iw 166 (907)
............+|...+.||.++ .+..||..+..-.. ......+.. ..++..-++ +|++.+ |.+.+|
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~--~~~m~~~r~--~~~~~~~~~---~IYv~G--G~~e~y 420 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQF--GPSTYYPHY--KSCALVFGR---RLFLVG--RNAEFY 420 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEe--CCCCCCccc--cceEEEECC---EEEEEC--CceEEe
Confidence 111112223334666666666543 47778876654311 111111111 122323333 444433 457788
Q ss_pred ecCCCeE--EEEEcCCCCCEEEEEEcCCCCEEEEEecC-----CeEEEEEccCCc
Q 002564 167 NISTKKK--LYEFKGWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDE 214 (907)
Q Consensus 167 d~~~~~~--~~~~~~h~~~I~~l~~sp~~~~la~g~~d-----g~I~iwd~~~~~ 214 (907)
|.++++= +..+.........+ .-++++.++|+.+ ..+..||..+++
T Consensus 421 dp~~~~W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 421 CESSNTWTLIDDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred cCCCCcEeEcCCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 8866532 22222111222222 2356677777654 345666665543
No 466
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.67 E-value=11 Score=33.11 Aligned_cols=107 Identities=13% Similarity=0.189 Sum_probs=69.7
Q ss_pred CEEEEEecCCcEEEEecCCC--------eEEEEEcCCCCCEEEEEEcC-----CCCEEEEEecCCeEEEEEccCCceEEE
Q 002564 152 NKVIVGSQEGSLQLWNISTK--------KKLYEFKGWGSSISSCVSSP-----ALDVVAVGCSDGKIHVHNVRYDEELVT 218 (907)
Q Consensus 152 ~~l~~~s~dg~i~iwd~~~~--------~~~~~~~~h~~~I~~l~~sp-----~~~~la~g~~dg~I~iwd~~~~~~~~~ 218 (907)
..|++++..|.|.|.+.... ..+..+.- ...|++++-.+ +.+.|++|+. ..+..||+.....+..
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fy 88 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFY 88 (136)
T ss_pred eeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhh
Confidence 45888888888999986532 23444443 67788886544 3568888876 5799999997766554
Q ss_pred EeecCCCCEEEEEEecC---CCCEEEEEeCCCcEEEEECCCceeeeee
Q 002564 219 FTHSMRGAVTALAFSSD---GQPLLASGASSGVISIWNLEKRRLQSVI 263 (907)
Q Consensus 219 ~~~~~~~~v~~l~fs~d---g~~~l~sg~~dg~I~iwd~~~~~~~~~~ 263 (907)
-.. ...|.++.+-.- ..+++++|+ +..|.-||.+..+...+.
T Consensus 89 ke~--~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 89 KEV--PDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred hhC--ccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEEe
Confidence 433 356777777431 223555555 677888886655554443
No 467
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.66 E-value=21 Score=39.37 Aligned_cols=138 Identities=15% Similarity=0.149 Sum_probs=0.0
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC--------cceeEEEEeeCC------CEEEEEe---------
Q 002564 478 VGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--------CSLVKIVYHRVN------GLLATVA--------- 534 (907)
Q Consensus 478 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~i~~~~~s~~~------~~la~~~--------- 534 (907)
+.|+|.|++++|++--..|.|++++-.++......... .....++++|+- ++|.+..
T Consensus 33 w~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~ 112 (454)
T TIGR03606 33 WALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKEL 112 (454)
T ss_pred eEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCc
Q ss_pred -CCCeEEEEEcc-----cceeEEEeecCCCC----eeeEEECCCCcEEEEEeCCCc----------E-------------
Q 002564 535 -DDLVIRLFDVV-----ALRMVRKFEGHTDR----ITDFCFSEDGKWLLSSGMDGS----------L------------- 581 (907)
Q Consensus 535 -~dg~I~v~d~~-----~~~~~~~~~~h~~~----I~~l~fspdg~~l~s~s~Dg~----------I------------- 581 (907)
....|.-|.+. -......+.+-... -..|.|.|||.+.++.+..+. .
T Consensus 113 ~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~ 192 (454)
T TIGR03606 113 PNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGK 192 (454)
T ss_pred cCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcchhcccccccccccc
Q ss_pred -------EEEEcCCCcee-------------eEeeeCCceEEEEECCCCceEEE
Q 002564 582 -------RIWDVILARQI-------------DAIHVDVSITALSLSPNMDVLAT 615 (907)
Q Consensus 582 -------~vwd~~~~~~~-------------~~~~~~~~v~~l~~spdg~~lat 615 (907)
+|+.+...-.+ -.-.++.....++|.|+|++.++
T Consensus 193 d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~Lw~~ 246 (454)
T TIGR03606 193 DYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGTLYAS 246 (454)
T ss_pred CcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCCEEEE
No 468
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.56 E-value=27 Score=37.31 Aligned_cols=197 Identities=16% Similarity=0.227 Sum_probs=110.6
Q ss_pred ceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEc----CCCCE--EEEEe-CC---CcEEEEeCCC--Ccc
Q 002564 391 NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS----ACGNF--AVLGT-AG---GWIERFNLQS--GIS 458 (907)
Q Consensus 391 ~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~g~~--l~~g~-~d---g~i~i~d~~~--~~~ 458 (907)
.++.+....+-+.+||+....+.... .+.+..+.+- -.|+. +++++ .+ ..|++|.+.. +.
T Consensus 69 SlIigTdK~~GL~VYdL~Gk~lq~~~-------~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~- 140 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLDGKELQSLP-------VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE- 140 (381)
T ss_dssp -EEEEEETTTEEEEEETTS-EEEEE--------SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-
T ss_pred ceEEEEeCCCCEEEEcCCCcEEEeec-------CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-
Confidence 35555566678999999877653221 1233333322 13433 34444 32 4688987753 32
Q ss_pred ceeeeccccccccCcCCcEEEEEE--cC-CCC-EEEEEecCCeEEEEECC---CC----ceeeeeecCcceeEEEEeeCC
Q 002564 459 RGSYLDMSERSNYAHNGEVVGVAC--DS-TNT-LMISAGYHGDIKVWDFK---GR----DLKSRWEVGCSLVKIVYHRVN 527 (907)
Q Consensus 459 ~~~~~~~~~~~~~~h~~~v~~l~~--s~-~~~-~l~s~~~dg~i~iwd~~---~~----~~~~~~~~~~~i~~~~~s~~~ 527 (907)
+..+....... ......+.++|+ ++ +|. +.+..+.+|.+..|.+. .+ ++++.+...+.+..|......
T Consensus 141 L~~v~~~~~p~-~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 141 LTDVTDPAAPI-ATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDET 219 (381)
T ss_dssp EEE-CBTTC-E-E-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTT
T ss_pred ceEcCCCCccc-ccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEeccc
Confidence 22221100000 011234677776 33 454 56667789999888774 22 467888888999999999999
Q ss_pred CEEEEEeCCCeEEEEEccc-----ceeEEEeec--CCCCeeeEEEC--CCC-cEEE-EEeCCCcEEEEEcCC-CceeeEe
Q 002564 528 GLLATVADDLVIRLFDVVA-----LRMVRKFEG--HTDRITDFCFS--EDG-KWLL-SSGMDGSLRIWDVIL-ARQIDAI 595 (907)
Q Consensus 528 ~~la~~~~dg~I~v~d~~~-----~~~~~~~~~--h~~~I~~l~fs--pdg-~~l~-s~s~Dg~I~vwd~~~-~~~~~~~ 595 (907)
..|.++-++.-|+-|+.+. ++.+....+ ....|-.|++- +++ .||+ |.-.+++..||+... ...+..|
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 9999999999998888762 233433333 34567777764 344 3555 444678899999874 3445555
Q ss_pred e
Q 002564 596 H 596 (907)
Q Consensus 596 ~ 596 (907)
+
T Consensus 300 ~ 300 (381)
T PF02333_consen 300 R 300 (381)
T ss_dssp E
T ss_pred E
Confidence 4
No 469
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.52 E-value=9.8 Score=41.00 Aligned_cols=147 Identities=15% Similarity=0.206 Sum_probs=93.5
Q ss_pred CCCCEEE-EEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCC-------EEEEEeCCCeEEEEEccc-ceeEEEee
Q 002564 484 STNTLMI-SAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-------LLATVADDLVIRLFDVVA-LRMVRKFE 554 (907)
Q Consensus 484 ~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~-------~la~~~~dg~I~v~d~~~-~~~~~~~~ 554 (907)
.+..++. .++....++-.|+..|+.+..+..+..+ -+.|.|..+ .-++|-.+..|.-.|.+- |..+....
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 3444444 4455667888899999999999988777 677877543 223454555555555432 21121111
Q ss_pred cCCCCeeeEEECC----CCcEEEEEeCCCcEEEEEcCCCceeeEee-eCCceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564 555 GHTDRITDFCFSE----DGKWLLSSGMDGSLRIWDVILARQIDAIH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (907)
Q Consensus 555 ~h~~~I~~l~fsp----dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~-~~~~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (907)
....++.-.||. .+.|+|.||..|-||+||--.-+....+. ....|..+..+.+|+++.+.+.. .+-+-+++
T Consensus 556 -sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~--yllL~d~~ 632 (776)
T COG5167 556 -SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN--YLLLTDVP 632 (776)
T ss_pred -ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc--eEEEEecc
Confidence 122233333333 33599999999999999965433333333 24458899999999999888876 58888887
Q ss_pred ccccc
Q 002564 630 CMFSG 634 (907)
Q Consensus 630 ~~~~~ 634 (907)
-.+..
T Consensus 633 ik~g~ 637 (776)
T COG5167 633 IKYGQ 637 (776)
T ss_pred cccCC
Confidence 66653
No 470
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.44 E-value=6 Score=46.43 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEE
Q 002564 424 PTAVKACTISACGNFAVLGTAGGWIER 450 (907)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~dg~i~i 450 (907)
...|..+.++++|.+++..+..|...+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 367999999999999999888774444
No 471
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.39 E-value=20 Score=35.63 Aligned_cols=234 Identities=12% Similarity=0.062 Sum_probs=141.1
Q ss_pred CCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceee
Q 002564 181 GSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ 260 (907)
Q Consensus 181 ~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~ 260 (907)
...-..++-.|||.+-.++...|.|--.|..+|+....-... ......+..-|||. .-++-+. .-|.-.|-++....
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~-Ga~Phgiv~gpdg~-~Witd~~-~aI~R~dpkt~evt 137 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGS-GASPHGIVVGPDGS-AWITDTG-LAIGRLDPKTLEVT 137 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCC-CCCCceEEECCCCC-eeEecCc-ceeEEecCcccceE
Confidence 445567888999999999888888888898888865544333 56678888889988 3333222 25555665554332
Q ss_pred e-eeec-ccccCeEEEEEecCCCEEEEEcCC---------CcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCCEE
Q 002564 261 S-VIRE-AHDNAIISLHFFANEPVLMSASAD---------NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI 329 (907)
Q Consensus 261 ~-~~~~-~h~~~V~~l~~~~~~~~l~s~~~d---------~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l 329 (907)
. .+.. .-........|.+.|++-+++... +.|++|.. ........|+..|||..-
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpa--------------PqG~gpyGi~atpdGsvw 203 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPA--------------PQGGGPYGICATPDGSVW 203 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeecc--------------CCCCCCcceEECCCCcEE
Confidence 1 1111 234567888899999887777531 23444422 123456778888888877
Q ss_pred EEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeee
Q 002564 330 LSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQN 409 (907)
Q Consensus 330 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~ 409 (907)
++.-.+..|...|..... ...+
T Consensus 204 yaslagnaiaridp~~~~-aev~--------------------------------------------------------- 225 (353)
T COG4257 204 YASLAGNAIARIDPFAGH-AEVV--------------------------------------------------------- 225 (353)
T ss_pred EEeccccceEEcccccCC-ccee---------------------------------------------------------
Confidence 776667667666654431 1111
Q ss_pred ceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCCCEE
Q 002564 410 FVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLM 489 (907)
Q Consensus 410 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 489 (907)
..........+.+-.+|.|..-++-...|.+..||.+... -.++.. .+....-.++.++..++.-
T Consensus 226 --------p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypL------Pgs~arpys~rVD~~grVW 290 (353)
T COG4257 226 --------PQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPL------PGSKARPYSMRVDRHGRVW 290 (353)
T ss_pred --------cCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeC------CCCCCCcceeeeccCCcEE
Confidence 1111112334455566777777777778889999887655 333321 2444455666777666554
Q ss_pred EEEecCCeEEEEECC
Q 002564 490 ISAGYHGDIKVWDFK 504 (907)
Q Consensus 490 ~s~~~dg~i~iwd~~ 504 (907)
.+--..|.|.-+|-.
T Consensus 291 ~sea~agai~rfdpe 305 (353)
T COG4257 291 LSEADAGAIGRFDPE 305 (353)
T ss_pred eeccccCceeecCcc
Confidence 444444555555543
No 472
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.08 E-value=19 Score=34.76 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=66.4
Q ss_pred EEEEEecCCcEEEEecC--CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEecC---C---eEEEE-EccC----CceE---
Q 002564 153 KVIVGSQEGSLQLWNIS--TKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD---G---KIHVH-NVRY----DEEL--- 216 (907)
Q Consensus 153 ~l~~~s~dg~i~iwd~~--~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d---g---~I~iw-d~~~----~~~~--- 216 (907)
.|+++...+.|.+|++. ..+.+.+|.. -+.|..+.++..|++|++--.+ . .+|+| |++. ...+
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 46565677889999987 4567788887 4889999999999999986443 2 56665 2221 1111
Q ss_pred ------------------EEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCcee
Q 002564 217 ------------------VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL 259 (907)
Q Consensus 217 ------------------~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~ 259 (907)
..+..+-..++.+++-.|-... |++|+ ++.+.+|.+.....
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQTI 167 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEEEE
Confidence 1111222346677777775442 44555 56899998765433
No 473
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.59 E-value=0.45 Score=54.15 Aligned_cols=151 Identities=19% Similarity=0.304 Sum_probs=86.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceeeeccccccccCcCCcEEEEE-----------EcCCCCEEEEEecC
Q 002564 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVA-----------CDSTNTLMISAGYH 495 (907)
Q Consensus 427 v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-----------~s~~~~~l~s~~~d 495 (907)
|.-+-+-++..++.++..+|.|++.+...... ..+ .+|...++.++ ++|||+.++.+..|
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~--------rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~d 256 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLF--------RSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISD 256 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH-HHH--------HhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecC
Confidence 33334445667888889999999988765433 222 25666555543 68999999999999
Q ss_pred CeEEEEECC-CC----ceeeeeecCc--ceeEEEEeeCCC---------EEEEEe-CCCeEEEEEcccceeEEE------
Q 002564 496 GDIKVWDFK-GR----DLKSRWEVGC--SLVKIVYHRVNG---------LLATVA-DDLVIRLFDVVALRMVRK------ 552 (907)
Q Consensus 496 g~i~iwd~~-~~----~~~~~~~~~~--~i~~~~~s~~~~---------~la~~~-~dg~I~v~d~~~~~~~~~------ 552 (907)
|.+++|-+. ++ .+...++.+. +-.|..++.+.. ++++++ .+..+++|....++|+-.
T Consensus 257 G~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v 336 (1283)
T KOG1916|consen 257 GSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGV 336 (1283)
T ss_pred CccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccce
Confidence 999999754 22 3444444443 333333333211 334443 356789998887777511
Q ss_pred --eecCCCCeeeEEECCC-CcEEEEEeCCCcEEEEEc
Q 002564 553 --FEGHTDRITDFCFSED-GKWLLSSGMDGSLRIWDV 586 (907)
Q Consensus 553 --~~~h~~~I~~l~fspd-g~~l~s~s~Dg~I~vwd~ 586 (907)
...|.+.|+.+....- -..+++-+-|++|.+|-=
T Consensus 337 ~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn 373 (1283)
T KOG1916|consen 337 QIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN 373 (1283)
T ss_pred EeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence 1123333332211100 011344567888999853
No 474
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=89.39 E-value=46 Score=38.25 Aligned_cols=151 Identities=17% Similarity=0.250 Sum_probs=83.8
Q ss_pred cCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceee--eeecCcceeEE---EEee------CCCEEEEEeC-C---C
Q 002564 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS--RWEVGCSLVKI---VYHR------VNGLLATVAD-D---L 537 (907)
Q Consensus 473 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~i~~~---~~s~------~~~~la~~~~-d---g 537 (907)
-...|.++.+.++++.+++.-.+|.|.+||+..+.... .......+ .+ +|-+ ...++.+.+. + -
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~-~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSI-NVSYSKFVNDFELENGKDLLLTVSQLSNSKL 206 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccccccc-ceehhhhhcccccccCCceEEEEEEcCCCcE
Confidence 35779999999999999999999999999994332222 12111111 11 1211 1234444443 2 2
Q ss_pred eEEEEEc-ccceeEEEee---cCCCCeeeEEECC-CCcEEEEEeCCCcEEEEEcCCCceeeEeeeCC-------ceEEEE
Q 002564 538 VIRLFDV-VALRMVRKFE---GHTDRITDFCFSE-DGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-------SITALS 605 (907)
Q Consensus 538 ~I~v~d~-~~~~~~~~~~---~h~~~I~~l~fsp-dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~-------~v~~l~ 605 (907)
..+++.+ .....+..+. -+.....+..|.- +|+...- .+++|.+|++++-+...++..+. .+.++.
T Consensus 207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 5677777 1122222222 1222223333332 5654433 67899999999988887776652 233333
Q ss_pred ECCCCceEEEEEecCCeEEEeecc
Q 002564 606 LSPNMDVLATAHVDQNGVYLWVNR 629 (907)
Q Consensus 606 ~spdg~~lat~~~d~~~i~lW~~~ 629 (907)
- |..+++.-+..+ .|++.|..
T Consensus 285 ~-~s~nRvLLs~~n--kIyLld~~ 305 (670)
T PF10395_consen 285 P-PSPNRVLLSVNN--KIYLLDLK 305 (670)
T ss_pred c-CCCCeEEEEcCC--EEEEEeeh
Confidence 2 333444444444 49999873
No 475
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.35 E-value=1.5 Score=29.69 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=27.1
Q ss_pred CCEEEEEEecCCC--CEEEEEeCCCcEEEEECCCc
Q 002564 225 GAVTALAFSSDGQ--PLLASGASSGVISIWNLEKR 257 (907)
Q Consensus 225 ~~v~~l~fs~dg~--~~l~sg~~dg~I~iwd~~~~ 257 (907)
+.|.++.|+|+.. .+|+.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999997543 58888888899999999853
No 476
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=89.11 E-value=22 Score=35.48 Aligned_cols=136 Identities=13% Similarity=0.188 Sum_probs=87.5
Q ss_pred CCeEEEEEEe-----CCeEEEEEcCcceEEEecCCCCcceEEEEEecC-----eEEEEEcCeEEEEeCCeeEEEEc----
Q 002564 25 GTENFVTVSV-----GKAFHIYNCAKLNLVLVGPQLPKKIRALASYRD-----YTFAAYGNHIAVVKRAHQVATWS---- 90 (907)
Q Consensus 25 ~~~~~~~~~~-----~~~v~iwd~~~~~~~~~~~~~~~~I~~la~~~~-----~~~~a~g~~I~vw~~~~~~~~~~---- 90 (907)
+...|+++.. +..++||.-.+.......+..|..|.++-.... ..-+|+|..|++|+.-++...+.
T Consensus 29 Gd~kLvvaD~g~~~~~~kLKVykGt~l~~E~~L~d~P~ai~sFy~d~~ep~~P~iAVA~G~~vyiYkNlkP~yKftlP~~ 108 (257)
T PF14779_consen 29 GDYKLVVADLGTGDQNMKLKVYKGTSLISEITLPDLPSAIVSFYMDEHEPRTPAIAVAAGPSVYIYKNLKPFYKFTLPPL 108 (257)
T ss_pred CeEEEEEEecCCcCCCceEEEEcCCChhhcccccCCCeEEEEEeccCCCCCCCeEEEEeCCEEEEEecccceeeecCCCC
Confidence 4556777774 468999988776666666666666666654431 56678899999986433221110
Q ss_pred -----------------------------------------------------------------ccccceEEEEe----
Q 002564 91 -----------------------------------------------------------------RHSAKVNLLLL---- 101 (907)
Q Consensus 91 -----------------------------------------------------------------~h~~~V~~l~~---- 101 (907)
.+...|+|++.
T Consensus 109 ~~~~~E~eiW~~~~~~~i~~~~l~~~L~~lr~~~~~~LS~rSl~~L~l~~ee~~~fi~~~k~~pl~~~t~ITcm~tikk~ 188 (257)
T PF14779_consen 109 EINPLEQEIWQQLREGKIDPETLKEMLESLRDIAGVKLSPRSLRFLQLDPEEREAFIERYKDSPLKRQTVITCMATIKKS 188 (257)
T ss_pred CCCHHHHHHHHhcccCCCCHHHHHHHHHHHhhccCCccCHHHHHHHCCCHHHHHHHHHHHhcCCcccCceeEEeeeeccc
Confidence 13456888873
Q ss_pred --e---CCEEEEEecCCcEEEEecCCCCccccceeeEecCCCcccEEE---EcCCCCCCEEEEEecCCcEEEE
Q 002564 102 --F---GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCI---MHPDTYLNKVIVGSQEGSLQLW 166 (907)
Q Consensus 102 --~---g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~l~~~s~dg~i~iw 166 (907)
+ -..|+.|.++|.|.|.|-..... +.++..+.-.+..++ +..-. -+|++++.||.|++.
T Consensus 189 ~~d~~a~scLViGTE~~~i~iLd~~af~i----l~~~~lpsvPv~i~~~G~~devd--yRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 189 SADEDAVSCLVIGTESGEIYILDPQAFTI----LKQVQLPSVPVFISVSGQYDEVD--YRIVVACRDGKIYTI 255 (257)
T ss_pred ccCCCCcceEEEEecCCeEEEECchhhee----EEEEecCCCceEEEEEeeeeccc--eEEEEEeCCCEEEEE
Confidence 1 35799999999999999887766 566665544332222 21122 378888899988764
No 477
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.09 E-value=2.3 Score=44.74 Aligned_cols=163 Identities=14% Similarity=0.065 Sum_probs=99.9
Q ss_pred CcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeee-e-ec--C---ccee-EEEEeeCCCEEEEEeCCCeEEEE-
Q 002564 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR-W-EV--G---CSLV-KIVYHRVNGLLATVADDLVIRLF- 542 (907)
Q Consensus 472 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~-~~--~---~~i~-~~~~s~~~~~la~~~~dg~I~v~- 542 (907)
.....|..+-..|||+.+..-+. ..+.++++.+...... + +. + ..++ ++..-..|.-+.+++.||.|.-|
T Consensus 218 ~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF 296 (733)
T COG4590 218 VPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF 296 (733)
T ss_pred CCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence 44567788889999998887765 7888998876543222 1 11 1 1121 11222345667788888888766
Q ss_pred Ecccc-----eeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCCceEEEEECCCCceEEEEE
Q 002564 543 DVVAL-----RMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAH 617 (907)
Q Consensus 543 d~~~~-----~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~spdg~~lat~~ 617 (907)
|+..+ ..++.++-...++..+.--.+.+-+++-+..|++.++.....+.+-.-+....+.-+++||.+.+|++-.
T Consensus 297 dvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~ 376 (733)
T COG4590 297 DVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSED 376 (733)
T ss_pred eeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheeec
Confidence 54432 1223332222334333322234556777788888888766665554444445677899999999999865
Q ss_pred ecCCeEEEeecccccccCCC
Q 002564 618 VDQNGVYLWVNRCMFSGDSN 637 (907)
Q Consensus 618 ~d~~~i~lW~~~~~~~~~~~ 637 (907)
.. .|+++.+...+-.++.
T Consensus 377 ~g--ki~~~~l~Nr~Peisw 394 (733)
T COG4590 377 QG--KIRLAQLENRNPEISW 394 (733)
T ss_pred CC--ceEEEEecCCCCCccH
Confidence 54 4999887666555443
No 478
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.92 E-value=9.8 Score=41.19 Aligned_cols=29 Identities=17% Similarity=0.027 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 002564 424 PTAVKACTISACGNFAVLGTAGGWIERFN 452 (907)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~dg~i~i~d 452 (907)
.-.|..+.+++.|..++..+.+|.+.++=
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEc
Confidence 35678889999999999999999776654
No 479
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=88.86 E-value=27 Score=34.84 Aligned_cols=243 Identities=12% Similarity=0.048 Sum_probs=143.4
Q ss_pred CCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCceeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCC
Q 002564 224 RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGD 303 (907)
Q Consensus 224 ~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~ 303 (907)
......++-.|||. +-.++...|.|--.|..+|+....-. +....-..+..-|||..-++-+.. -|-.++..+..
T Consensus 61 G~ap~dvapapdG~-VWft~qg~gaiGhLdP~tGev~~ypL-g~Ga~Phgiv~gpdg~~Witd~~~---aI~R~dpkt~e 135 (353)
T COG4257 61 GSAPFDVAPAPDGA-VWFTAQGTGAIGHLDPATGEVETYPL-GSGASPHGIVVGPDGSAWITDTGL---AIGRLDPKTLE 135 (353)
T ss_pred CCCccccccCCCCc-eEEecCccccceecCCCCCceEEEec-CCCCCCceEEECCCCCeeEecCcc---eeEEecCcccc
Confidence 35667788889998 77888888888888988887765544 666666778888888765554332 23333433322
Q ss_pred cceeEe-ccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccceeechhhhhHHHhhccchhhhcccCceeEeeec
Q 002564 304 PRLLRF-RSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCA 382 (907)
Q Consensus 304 ~~~~~~-~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (907)
...... ...-........|.+.|+.-+++.. |.---.|.
T Consensus 136 vt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdP--------------------------------------- 175 (353)
T COG4257 136 VTRFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDP--------------------------------------- 175 (353)
T ss_pred eEEeecccccCCCcccceeeCCCccEEEeecc-ccceecCc---------------------------------------
Confidence 111111 1222345677788888877776642 11000000
Q ss_pred ccccccccceEEEeeCCceEEEEEeeeceecceeeecCCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceee
Q 002564 383 EIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY 462 (907)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~ 462 (907)
..+.+++|+... ......++..|+|..-++...+..|-..|..++.. ..+
T Consensus 176 ---------------a~~~i~vfpaPq--------------G~gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~ 225 (353)
T COG4257 176 ---------------ARNVISVFPAPQ--------------GGGPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVV 225 (353)
T ss_pred ---------------ccCceeeeccCC--------------CCCCcceEECCCCcEEEEeccccceEEcccccCCc-cee
Confidence 112333343321 14567788999999988888888888888877732 222
Q ss_pred eccccccccCcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecC---cceeEEEEeeCCCEEEEEeCCCeE
Q 002564 463 LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG---CSLVKIVYHRVNGLLATVADDLVI 539 (907)
Q Consensus 463 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~i~~~~~s~~~~~la~~~~dg~I 539 (907)
.. ..+....-..+-.+|.++.-+|....+.+..+|-.... -.++... ..-.++.....++.-.+--..|.|
T Consensus 226 p~-----P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~grVW~sea~agai 299 (353)
T COG4257 226 PQ-----PNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAI 299 (353)
T ss_pred cC-----CCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeeccCCcEEeeccccCce
Confidence 21 01223445667778888888887777888888765543 2333322 334455555555544444445566
Q ss_pred EEEEcccc
Q 002564 540 RLFDVVAL 547 (907)
Q Consensus 540 ~v~d~~~~ 547 (907)
.-+|-++.
T Consensus 300 ~rfdpeta 307 (353)
T COG4257 300 GRFDPETA 307 (353)
T ss_pred eecCcccc
Confidence 66665543
No 480
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=88.61 E-value=50 Score=37.66 Aligned_cols=392 Identities=15% Similarity=0.134 Sum_probs=170.7
Q ss_pred EEEEEecCCcEEEE--ecCCCeEEE-------EEcC----CCCCEEEEEEcCCCCEEEEEecCCeEEEEEccC----C-c
Q 002564 153 KVIVGSQEGSLQLW--NISTKKKLY-------EFKG----WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRY----D-E 214 (907)
Q Consensus 153 ~l~~~s~dg~i~iw--d~~~~~~~~-------~~~~----h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~----~-~ 214 (907)
.|++++.+|.+.+. +..+.+... .+.. ....-..++..|.++.++++..+|.+.|+-+.. + .
T Consensus 2 ~L~v~tdsg~l~~l~~~~~~~~~~~~~v~~~~~~~~~~~r~~~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~ 81 (504)
T PF10433_consen 2 SLVVTTDSGKLSILEYDPSTHGFFKEFVHQWEPLSKSGSRLSQPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIA 81 (504)
T ss_dssp EEEEEETTTEEEEEEEEEETTEE-E-EEEEEEE---SSSEB-TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-T
T ss_pred EEEEEECCCCEEEEEEECCCCccceeeEEEeEecCCCCCChhcCCcEEEECCcCCEEEEEecCCeEEEEEeccccccccc
Confidence 46777777776654 433333321 1111 123456789999999999999999999999887 1 1
Q ss_pred eEEEEee--cCCCCEEEEEEec---C-CCCEEEEE--eCC--CcEEEEE--CCCceee------ee--eecccccCeEEE
Q 002564 215 ELVTFTH--SMRGAVTALAFSS---D-GQPLLASG--ASS--GVISIWN--LEKRRLQ------SV--IREAHDNAIISL 274 (907)
Q Consensus 215 ~~~~~~~--~~~~~v~~l~fs~---d-g~~~l~sg--~~d--g~I~iwd--~~~~~~~------~~--~~~~h~~~V~~l 274 (907)
....+.. ...+.|..++|-. . ..+.++.- ... ..+..++ ...+... .. +...+..+ .-+
T Consensus 82 ~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p-~~L 160 (504)
T PF10433_consen 82 FSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELP-SFL 160 (504)
T ss_dssp T---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-EEEEEEEE--------EETTTTEEEE--EEEE-TT-EEE
T ss_pred ccccccccccCCceEEEEEEEecccCCCCceEEEEEEEecccceeEEEeeecccccceeeeeccccccccccCCCc-cEE
Confidence 1111111 1156789999985 1 22244432 222 2234443 3332110 00 11111222 223
Q ss_pred EEecC--CCEEEEEcCCCcEEEEEccCCCCCcceeEecc--C-CCCCCeEEE-------EecCCCEEEEEeCCCCEEEEE
Q 002564 275 HFFAN--EPVLMSASADNSIKMWIFDTTDGDPRLLRFRS--G-HSAPPLCIR-------FYANGRHILSAGQDRAFRLFS 342 (907)
Q Consensus 275 ~~~~~--~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~--~-h~~~v~~i~-------~~~~g~~l~s~~~dg~i~iwd 342 (907)
.-.|. +-.+++ + ++.+.+-+.....+......... . ...-+.+.. ...++..++.+..+|.+....
T Consensus 161 IPlp~~~ggllV~-~-~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~ 238 (504)
T PF10433_consen 161 IPLPNPPGGLLVG-G-ENIIIYKNHLIGSGDYSFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLT 238 (504)
T ss_dssp EEE-TTT-SEEEE-E-SSEEEEEE------TTEEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEE-C-CEEEEEecccccccccccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEE
Confidence 33333 334433 3 23333322222111111111110 1 112222222 234677899999999998887
Q ss_pred ceecccceeechhhhhHHHhhccchhhhcccCceeEeeecccccccccceEEEeeCCceEEEEEeeeceecceeeecCCC
Q 002564 343 VIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422 (907)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~w~~~~~~~~~~~~~~~~~ 422 (907)
+..... .+. +-.+.+ .
T Consensus 239 l~~~~~--~i~--------------------------------------------------i~~~g~------------~ 254 (504)
T PF10433_consen 239 LDNDGG--SIS--------------------------------------------------ITYLGT------------L 254 (504)
T ss_dssp EEEEEE--EEE--------------------------------------------------EEEEEE-------------
T ss_pred EEECCC--eEE--------------------------------------------------EEEcCC------------c
Confidence 765432 000 000000 0
Q ss_pred CCCceEEEEEcCCC-CEEEEEeCCCcEEEEeCC--CCccceeeeccccccccCcCCcEEEEEEcCC----CC------EE
Q 002564 423 NPTAVKACTISACG-NFAVLGTAGGWIERFNLQ--SGISRGSYLDMSERSNYAHNGEVVGVACDST----NT------LM 489 (907)
Q Consensus 423 ~~~~v~~~~~s~~g-~~l~~g~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~----~~------~l 489 (907)
....+++++..+| .++++|+..|.=.++.+. .-.....+ ..-++|..+++.+. .. .+
T Consensus 255 -~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~---------~N~~Pi~D~~v~~~~~~~~~~~~~~~~l 324 (504)
T PF10433_consen 255 -CSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSL---------PNWGPIVDFCVVDSSNSGQPSNPSSDQL 324 (504)
T ss_dssp --S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-------------SEEEEEEE-TSSSSS-------EE
T ss_pred -CChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEec---------cCcCCccceEEeccccCCCCcccccceE
Confidence 1334455555544 578888876654444443 22333333 34578888888431 11 45
Q ss_pred EEEe---cCCeEEEEECCCCc---eeeeeecCcceeEEEEeeC----CCEEEEEeCCCeEEEEEcc---cceeEEEee--
Q 002564 490 ISAG---YHGDIKVWDFKGRD---LKSRWEVGCSLVKIVYHRV----NGLLATVADDLVIRLFDVV---ALRMVRKFE-- 554 (907)
Q Consensus 490 ~s~~---~dg~i~iwd~~~~~---~~~~~~~~~~i~~~~~s~~----~~~la~~~~dg~I~v~d~~---~~~~~~~~~-- 554 (907)
++++ .+|.+++..-.-+- ........+ +..+-.-+. ..+++.+..+ .-+++.+. ..+.+....
T Consensus 325 v~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~ 402 (504)
T PF10433_consen 325 VACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEED 402 (504)
T ss_dssp EEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEEEESS-EEEEEEES----SSEEEEE---
T ss_pred EEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEEEcCC-ceEEEEEecccCCcchhhhhhc
Confidence 5554 57788887532111 222222222 333332222 4566666554 44566553 233332221
Q ss_pred cC---CCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCceeeEeeeCC--ceEEEEECCCCceEEEEEecCCeEEEeecc
Q 002564 555 GH---TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV--SITALSLSPNMDVLATAHVDQNGVYLWVNR 629 (907)
Q Consensus 555 ~h---~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~--~v~~l~~spdg~~lat~~~d~~~i~lW~~~ 629 (907)
+- ...+.+-.+. +..++=.... .|++.+...++.......+. .|.+.+.. +.+++.+-.++ .+..+.+.
T Consensus 403 ~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~--~~~v~v~~~~~-~~~~~~~~ 476 (504)
T PF10433_consen 403 GFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVAASIN--DPQVLVALSGG-ELVYFELD 476 (504)
T ss_dssp TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SEEEES--SSEEEEEE-TT-EEEEEEEE
T ss_pred cCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEEEEEC--CCEEEEEEeCC-cEEEEEEE
Confidence 11 1122222222 3344444433 48888888888777665443 36666664 35566655566 47777654
No 481
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=88.60 E-value=30 Score=39.64 Aligned_cols=92 Identities=11% Similarity=0.124 Sum_probs=50.6
Q ss_pred CcEEEEEEcCCCCEEEEEecCCe-----EEEEECC---CCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEccc
Q 002564 475 GEVVGVACDSTNTLMISAGYHGD-----IKVWDFK---GRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA 546 (907)
Q Consensus 475 ~~v~~l~~s~~~~~l~s~~~dg~-----i~iwd~~---~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~ 546 (907)
+.-..+.|-|.|..+++-+.||. |.++.-+ .|+.-............+|.-....+|++. .+.+.+|-..+
T Consensus 247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkN 325 (1243)
T COG5290 247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKN 325 (1243)
T ss_pred cchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cceEEEEEccc
Confidence 33445789999999999886653 5565533 222222223334455666666555555543 46788997665
Q ss_pred ceeEEEeecCCCCeeeEEECC
Q 002564 547 LRMVRKFEGHTDRITDFCFSE 567 (907)
Q Consensus 547 ~~~~~~~~~h~~~I~~l~fsp 567 (907)
..-.-+..-.-..+.-+.|+|
T Consensus 326 yhWYLK~e~~ip~~s~vkwhp 346 (1243)
T COG5290 326 YHWYLKVERQIPGISYVKWHP 346 (1243)
T ss_pred eEEEEEEeecCCCcceeeecc
Confidence 432212111223344556666
No 482
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.46 E-value=12 Score=39.80 Aligned_cols=238 Identities=15% Similarity=0.183 Sum_probs=117.4
Q ss_pred EEeeCCEEEEEecCCcEEEEecCCCCcc-ccceeeEecCCCcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCe----E
Q 002564 99 LLLFGEHILSIDIDGNMFIWAFKGIEEN-LAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK----K 173 (907)
Q Consensus 99 l~~~g~~l~s~~~dg~v~vWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~----~ 173 (907)
+...|+.-+--+.||.=..|.+.+.... ..++++.......+ .-+-.|.+. ..++.|..+|.+.+....-.. +
T Consensus 76 m~~~G~~a~l~~N~g~Gvf~~l~~~~aPAgs~I~~qal~~ppv-~wa~~~~gq-p~~alglsngqv~v~qp~~s~t~p~p 153 (733)
T COG4590 76 MGAYGENAFLMSNDGVGVFWSLRSVSAPAGSPIQTQALGFPPV-LWAQTPPGQ-PWFALGLSNGQVAVVQPQLSHTMPTP 153 (733)
T ss_pred cccccceeEEEecCCccEEEEecccCCCCCCchhhhhcCCCCc-ccccCCCCC-ceEEEeccCCeEEEEeccccccCCCC
Confidence 3345665555667888778887654321 11233332222211 122233343 678889999999887542110 1
Q ss_pred EEEEcCCCCCEEEEEEcCCCC--------EEEEEecCCeEEEEEccC-----------C-ceEEEEeecCCCCEEEEEEe
Q 002564 174 LYEFKGWGSSISSCVSSPALD--------VVAVGCSDGKIHVHNVRY-----------D-EELVTFTHSMRGAVTALAFS 233 (907)
Q Consensus 174 ~~~~~~h~~~I~~l~~sp~~~--------~la~g~~dg~I~iwd~~~-----------~-~~~~~~~~~~~~~v~~l~fs 233 (907)
-..|.. .-.-++..+.|+ +...++.+....+++... . +.+..+... ...|..+-..
T Consensus 154 g~~Fp~---g~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~L~g~~t~q~e~i~~L~~~-~~~v~qllL~ 229 (733)
T COG4590 154 GREFPP---GLEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQILRGDRTTQQEIIRLLSVP-FSDVSQLLLT 229 (733)
T ss_pred CccCCC---CCCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhhhhcccCchhhhhhhcCCC-ccchHhhEEC
Confidence 111111 111122333332 222333344444444321 1 122223222 4578888899
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCceeeee--eecccc---cCeE-EEEEecCCCEEEEEcCCCcEEEEEccCCCCCccee
Q 002564 234 SDGQPLLASGASSGVISIWNLEKRRLQSV--IREAHD---NAII-SLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL 307 (907)
Q Consensus 234 ~dg~~~l~sg~~dg~I~iwd~~~~~~~~~--~~~~h~---~~V~-~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~ 307 (907)
|||+ .+..-+. ..+.++++.+...... ...... ..|+ .+.....|.-++.++.||.|..|---..++.+.+-
T Consensus 230 Pdg~-~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~ 307 (733)
T COG4590 230 PDGK-TLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLN 307 (733)
T ss_pred CCCC-EEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcce
Confidence 9999 5555443 6888998876643222 110011 1222 22334567778889999999999332223333332
Q ss_pred --EeccCCCCCCeEEEEecCCCEEEEEeCCCCEEEEEce
Q 002564 308 --RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVI 344 (907)
Q Consensus 308 --~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~ 344 (907)
+.++-...++..+.-..+.+-+++-+..|++..+...
T Consensus 308 h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st 346 (733)
T COG4590 308 HIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYST 346 (733)
T ss_pred eeeccccCcccceeeccccccceEEEEcCCCceeeeecc
Confidence 2222222333333333345567777778887776543
No 483
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.11 E-value=39 Score=35.82 Aligned_cols=136 Identities=13% Similarity=0.064 Sum_probs=63.1
Q ss_pred CEEEEEecC-----CcEEEEecCCCeE---EEEEcCCCCCE--EEEEEcCCCCEEEEEec-----CCeEEEEEccCCceE
Q 002564 152 NKVIVGSQE-----GSLQLWNISTKKK---LYEFKGWGSSI--SSCVSSPALDVVAVGCS-----DGKIHVHNVRYDEEL 216 (907)
Q Consensus 152 ~~l~~~s~d-----g~i~iwd~~~~~~---~~~~~~h~~~I--~~l~~sp~~~~la~g~~-----dg~I~iwd~~~~~~~ 216 (907)
...++|+.+ ..+..+|+.+.+- ...+..-..+. .+++ .-++++.+.|+. ...+..||+.+.+-.
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~-~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSAC-YKDGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEE-EECCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 445666653 3566777766542 12222111111 1122 224566666664 246888888766532
Q ss_pred EEEeecCCCCEEEEEEecCCCCEEEEEeCCC----cEEEEECCCceeeeeeeccc-ccCe----EEEEEecCCCEEEEEc
Q 002564 217 VTFTHSMRGAVTALAFSSDGQPLLASGASSG----VISIWNLEKRRLQSVIREAH-DNAI----ISLHFFANEPVLMSAS 287 (907)
Q Consensus 217 ~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg----~I~iwd~~~~~~~~~~~~~h-~~~V----~~l~~~~~~~~l~s~~ 287 (907)
..-...........+..-+++ +.+.|+.++ .+.+||..+.+-...-.... ..+. .+.....++.+++.|+
T Consensus 153 ~~~~~p~~~r~~~~~~~~~~~-iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG 231 (323)
T TIGR03548 153 ELPDFPGEPRVQPVCVKLQNE-LYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGG 231 (323)
T ss_pred ECCCCCCCCCCcceEEEECCE-EEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECC
Confidence 211111111222222334566 777777653 35688988775432211000 0111 1111223566778887
Q ss_pred CC
Q 002564 288 AD 289 (907)
Q Consensus 288 ~d 289 (907)
.+
T Consensus 232 ~~ 233 (323)
T TIGR03548 232 FN 233 (323)
T ss_pred cC
Confidence 65
No 484
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.02 E-value=2.2 Score=28.86 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=31.2
Q ss_pred CCCcEEEEEe-CCCcEEEEEcCCCceeeEeeeCCceEEEEEC
Q 002564 567 EDGKWLLSSG-MDGSLRIWDVILARQIDAIHVDVSITALSLS 607 (907)
Q Consensus 567 pdg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~v~~l~~s 607 (907)
|++++|.++. .+++|.++|..+++.+..+........++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 5777776655 5789999999999998888776556666653
No 485
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.67 E-value=4.3 Score=39.99 Aligned_cols=74 Identities=9% Similarity=0.129 Sum_probs=49.1
Q ss_pred eeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEe-------e-------cCCCCeeeEEECCCCcEEEEEe
Q 002564 511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF-------E-------GHTDRITDFCFSEDGKWLLSSG 576 (907)
Q Consensus 511 ~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~-------~-------~h~~~I~~l~fspdg~~l~s~s 576 (907)
.+..+.++.. +..+++++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-+
T Consensus 8 ~i~Lgs~~~~--l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls 85 (219)
T PF07569_consen 8 PIVLGSPVSF--LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS 85 (219)
T ss_pred cEecCCceEE--EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe
Confidence 3344455444 4456889999999999999999998764432 1 2345566777777776666554
Q ss_pred CCCcEEEEEcC
Q 002564 577 MDGSLRIWDVI 587 (907)
Q Consensus 577 ~Dg~I~vwd~~ 587 (907)
+|..+.|+..
T Consensus 86 -ng~~y~y~~~ 95 (219)
T PF07569_consen 86 -NGDSYSYSPD 95 (219)
T ss_pred -CCCEEEeccc
Confidence 4566677654
No 486
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.26 E-value=44 Score=35.47 Aligned_cols=107 Identities=16% Similarity=0.220 Sum_probs=67.1
Q ss_pred ceEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccceeeeccccc-------cccCcCCcEEEEEEcCCCCEEEEE
Q 002564 426 AVKACTISACGNFAVLGTAG------GWIERFNLQSGISRGSYLDMSER-------SNYAHNGEVVGVACDSTNTLMISA 492 (907)
Q Consensus 426 ~v~~~~~s~~g~~l~~g~~d------g~i~i~d~~~~~~~~~~~~~~~~-------~~~~h~~~v~~l~~s~~~~~l~s~ 492 (907)
..-++++.++|.++++.-.+ -.|..|+.. |.....+..+... .....+....+|+++|+|+.|+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 44567777777777776666 688889877 6666655322221 122356789999999999966665
Q ss_pred ec-----CC---------eEEEEECC--C-Cceeeee----e------cCcceeEEEEeeCCCEEEEE
Q 002564 493 GY-----HG---------DIKVWDFK--G-RDLKSRW----E------VGCSLVKIVYHRVNGLLATV 533 (907)
Q Consensus 493 ~~-----dg---------~i~iwd~~--~-~~~~~~~----~------~~~~i~~~~~s~~~~~la~~ 533 (907)
.. |+ .++++.+. + ++....+ . ....++.+.+-+++++|+.-
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 42 22 15555544 3 2222222 2 23678889999999877654
No 487
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=87.11 E-value=47 Score=35.64 Aligned_cols=60 Identities=8% Similarity=0.082 Sum_probs=28.3
Q ss_pred CcEEEEECCCceeeeeeecccc-cCeEEEEEecCCCEEEEEcCCC------cEEEEEccCCCCCccee
Q 002564 247 GVISIWNLEKRRLQSVIREAHD-NAIISLHFFANEPVLMSASADN------SIKMWIFDTTDGDPRLL 307 (907)
Q Consensus 247 g~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~~~d~------~i~vw~~~~~~~~~~~~ 307 (907)
..+.+||..+.+-...-..... ..-.+++ .-++++.+.|+.+. .+..++++.....+..+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~ 234 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIV-HKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKL 234 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEE-EECCEEEEEeeeeCCCccchheEEEEecCCCceeeec
Confidence 4688899887644332211111 1112222 33666777776531 23445554443344333
No 488
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=86.80 E-value=57 Score=39.17 Aligned_cols=76 Identities=13% Similarity=0.015 Sum_probs=54.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccceee----eccccc-------cccCcCCcEEEEEEcCCCCEEEEE
Q 002564 424 PTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSY----LDMSER-------SNYAHNGEVVGVACDSTNTLMISA 492 (907)
Q Consensus 424 ~~~v~~~~~s~~g~~l~~g~~dg~i~i~d~~~~~~~~~~----~~~~~~-------~~~~h~~~v~~l~~s~~~~~l~s~ 492 (907)
...|.+++...-+.+++....||+|.++|-.+-+..... ...... ....+...+..++|||.+-.++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 367888888888999999999999999998877655444 111100 001122245568899999989888
Q ss_pred ecCCeEE
Q 002564 493 GYHGDIK 499 (907)
Q Consensus 493 ~~dg~i~ 499 (907)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 8888865
No 489
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=85.42 E-value=60 Score=35.29 Aligned_cols=40 Identities=3% Similarity=0.000 Sum_probs=19.6
Q ss_pred cEEEEECCCceeeeeeeccc-ccCeEEEEEecCCCEEEEEcC
Q 002564 248 VISIWNLEKRRLQSVIREAH-DNAIISLHFFANEPVLMSASA 288 (907)
Q Consensus 248 ~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~~~ 288 (907)
.+.+||..+.+-...-.... ...-.++... ++++.+.|+.
T Consensus 190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~-~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVIK-GNKLWLINGE 230 (376)
T ss_pred eEEEEECCCCeeeECCcCCCCCCCcceEEEE-CCEEEEEeee
Confidence 58889988775443221111 1111233332 5566666664
No 490
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=85.24 E-value=42 Score=38.63 Aligned_cols=38 Identities=5% Similarity=0.225 Sum_probs=32.1
Q ss_pred cceeeEeecCCcceeEEEcCCeEEEEEEeCCeEEEEEc
Q 002564 6 PYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNC 43 (907)
Q Consensus 6 ~~r~~g~v~~~~~~~~~~~~~~~~~~~~~~~~v~iwd~ 43 (907)
|...+|.|+|++..+..+.+.+.++++..+++|.+++-
T Consensus 104 ~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 104 EMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred hhhhhccccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 45678999999998888888888999998999888763
No 491
>PLN02153 epithiospecifier protein
Probab=85.15 E-value=58 Score=34.85 Aligned_cols=133 Identities=11% Similarity=0.138 Sum_probs=60.5
Q ss_pred CEEEEEecC-----CcEEEEecCCCeE--EEEEcC---CCCCEEEEEEcCCCCEEEEEecC-----------CeEEEEEc
Q 002564 152 NKVIVGSQE-----GSLQLWNISTKKK--LYEFKG---WGSSISSCVSSPALDVVAVGCSD-----------GKIHVHNV 210 (907)
Q Consensus 152 ~~l~~~s~d-----g~i~iwd~~~~~~--~~~~~~---h~~~I~~l~~sp~~~~la~g~~d-----------g~I~iwd~ 210 (907)
+.++.|+.+ ..+.+||..+.+= +..+.. ........+..-++++.+.|+.+ ..+.+||.
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~ 166 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNI 166 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEEC
Confidence 445556543 3577888876532 222210 11111212223345666666643 24778888
Q ss_pred cCCceEEEEee----cCCCCEEEEEEecCCCCEEEEEeC-------------CCcEEEEECCCceeeeeeecc--c-ccC
Q 002564 211 RYDEELVTFTH----SMRGAVTALAFSSDGQPLLASGAS-------------SGVISIWNLEKRRLQSVIREA--H-DNA 270 (907)
Q Consensus 211 ~~~~~~~~~~~----~~~~~v~~l~fs~dg~~~l~sg~~-------------dg~I~iwd~~~~~~~~~~~~~--h-~~~ 270 (907)
++.+-...-.. ...... +++ .-+++ +++.|+. ...+.+||+.+.+-...-..+ . ...
T Consensus 167 ~~~~W~~l~~~~~~~~~r~~~-~~~-~~~~~-iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~ 243 (341)
T PLN02153 167 ADGKWVQLPDPGENFEKRGGA-GFA-VVQGK-IWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS 243 (341)
T ss_pred CCCeEeeCCCCCCCCCCCCcc-eEE-EECCe-EEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc
Confidence 76643321110 001111 222 23555 5555542 246888998877544332100 1 111
Q ss_pred eEEEEEecCCCEEEEEcC
Q 002564 271 IISLHFFANEPVLMSASA 288 (907)
Q Consensus 271 V~~l~~~~~~~~l~s~~~ 288 (907)
..++. .-++.+++.|+.
T Consensus 244 ~~~~~-~~~~~iyv~GG~ 260 (341)
T PLN02153 244 VFAHA-VVGKYIIIFGGE 260 (341)
T ss_pred eeeeE-EECCEEEEECcc
Confidence 12222 235667777774
No 492
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=85.08 E-value=35 Score=42.95 Aligned_cols=153 Identities=10% Similarity=0.147 Sum_probs=89.6
Q ss_pred CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeCCCcEEEEECCCce
Q 002564 179 GWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR 258 (907)
Q Consensus 179 ~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~ 258 (907)
.|...++.+.-+++|..+=. .|+.++.||........ .......+++.+.-.-||+ +.+ .++. .+-|+..+.
T Consensus 360 aH~A~LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~~Wk~-~~~~~d~~~S~Ls~qgdG~-lYA---k~~~-~l~nLSs~~ 431 (1774)
T PF11725_consen 360 AHIAHLTGVHTDPDGEQLRL--HDDRLYQFDPNTARWKP-PPDKSDTPFSSLSRQGDGK-LYA---KDDD-TLVNLSSGQ 431 (1774)
T ss_pred HHHHHhhccccCCCCCeEEe--ecCceeeeccccceecC-CCCcccchhhhhcccCCCc-eEe---cCCC-ceeecCCCC
Confidence 45566777777777776554 45677778766543221 1122234566666666776 333 2222 134554443
Q ss_pred eeeeeecccccCeEEEEEecCCCE-EEEEcCCCcEEEEEccCCCCCcce----eEeccCCCCCCeEEEEecCCCEEEEEe
Q 002564 259 LQSVIREAHDNAIISLHFFANEPV-LMSASADNSIKMWIFDTTDGDPRL----LRFRSGHSAPPLCIRFYANGRHILSAG 333 (907)
Q Consensus 259 ~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~d~~i~vw~~~~~~~~~~~----~~~~~~h~~~v~~i~~~~~g~~l~s~~ 333 (907)
.... .-..+.+....+++.. ++++-....+.+|+++...+.... .-.+.+-.....+|.++++ .|+.+.
T Consensus 432 ~~~~----~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d--rLFvAD 505 (1774)
T PF11725_consen 432 MSEA----EVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND--RLFVAD 505 (1774)
T ss_pred cchh----hhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCC--eEEEEe
Confidence 2211 1245777788889886 555555566799998877554332 1122233336677777765 688899
Q ss_pred CCCCEEEEEcee
Q 002564 334 QDRAFRLFSVIQ 345 (907)
Q Consensus 334 ~dg~i~iwd~~~ 345 (907)
.+|.++.=++..
T Consensus 506 seGkLYsa~l~~ 517 (1774)
T PF11725_consen 506 SEGKLYSADLPA 517 (1774)
T ss_pred CCCCEEeccccc
Confidence 999887766643
No 493
>PLN02193 nitrile-specifier protein
Probab=85.07 E-value=72 Score=35.92 Aligned_cols=132 Identities=11% Similarity=0.134 Sum_probs=61.6
Q ss_pred CEEEEEecC-----CcEEEEecCCCeEEE--EEc--CCCCCEEEEEEcCCCCEEEEEecC-----CeEEEEEccCCceEE
Q 002564 152 NKVIVGSQE-----GSLQLWNISTKKKLY--EFK--GWGSSISSCVSSPALDVVAVGCSD-----GKIHVHNVRYDEELV 217 (907)
Q Consensus 152 ~~l~~~s~d-----g~i~iwd~~~~~~~~--~~~--~h~~~I~~l~~sp~~~~la~g~~d-----g~I~iwd~~~~~~~~ 217 (907)
...+.|+.+ +.+..+|+.+.+=.. .+. .....-.+++ .-++++.+.|+.+ ..+..||+.+.+-..
T Consensus 230 ~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~ 308 (470)
T PLN02193 230 TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKWFH 308 (470)
T ss_pred EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEEEe
Confidence 345555544 357788887654221 111 0011111222 2245566666654 346778877654322
Q ss_pred EEee----cCCCCEEEEEEecCCCCEEEEEeCC----CcEEEEECCCceeeeeeec---ccccCeEEEEEecCCCEEEEE
Q 002564 218 TFTH----SMRGAVTALAFSSDGQPLLASGASS----GVISIWNLEKRRLQSVIRE---AHDNAIISLHFFANEPVLMSA 286 (907)
Q Consensus 218 ~~~~----~~~~~v~~l~fs~dg~~~l~sg~~d----g~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~ 286 (907)
.-.. ...... +++ .-+++ +++.|+.+ ..+.+||+.+.+-...-.. .......+++ .-++++++.|
T Consensus 309 ~~~~~~~~~~R~~~-~~~-~~~gk-iyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~G 384 (470)
T PLN02193 309 CSTPGDSFSIRGGA-GLE-VVQGK-VWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFG 384 (470)
T ss_pred CCCCCCCCCCCCCc-EEE-EECCc-EEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEEC
Confidence 1100 001111 222 23566 66666654 4689999988765433210 0111112222 3356677777
Q ss_pred cC
Q 002564 287 SA 288 (907)
Q Consensus 287 ~~ 288 (907)
+.
T Consensus 385 G~ 386 (470)
T PLN02193 385 GE 386 (470)
T ss_pred Cc
Confidence 75
No 494
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=84.90 E-value=63 Score=35.06 Aligned_cols=221 Identities=15% Similarity=0.016 Sum_probs=0.0
Q ss_pred CCEEEEEecCCcEEEEecCCCCccccceeeEecCC--CcccEEEEcCCCCCCEEEEEecCCcEEEEecCCCeEEEEEcCC
Q 002564 103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDD--KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW 180 (907)
Q Consensus 103 g~~l~s~~~dg~v~vWd~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~h 180 (907)
+..++.+..+|.|.-.|..++.. +-...... .....-.+..++ ++++++.+|.++.+|.++|+.+......
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~----~W~~~~~~~~~~~~~~~~~~~G---~i~~g~~~g~~y~ld~~~G~~~W~~~~~ 140 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLV----KWSYPLLGAVAQLSGPILGSDG---KIYVGSWDGKLYALDASTGTLVWSRNVG 140 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcE----EecccCcCcceeccCceEEeCC---eEEEecccceEEEEECCCCcEEEEEecC
Q ss_pred C-CCEEEEEEcCCCCEEEEEecCCeEEEEEccCCceEEEEeecC--CCCEEEEEEecCCCCEEEEEeC--CCcEEEEECC
Q 002564 181 G-SSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSM--RGAVTALAFSSDGQPLLASGAS--SGVISIWNLE 255 (907)
Q Consensus 181 ~-~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~--~~~v~~l~fs~dg~~~l~sg~~--dg~I~iwd~~ 255 (907)
. -.+..-..-.++..++.. .+|.+...|..+|+.+....... ...+..-....++. +..+.. ++.+.-.|.+
T Consensus 141 ~~~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--vy~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 141 GSPYYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT--VYVGSDGYDGILYALNAE 217 (370)
T ss_pred CCeEEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCceeecce--EEEecCCCcceEEEEEcc
Q ss_pred Cceeeee----eecccc----cCeEEEEEecCCCEEEEEcCCCcEEEEEccCCCCCcceeEeccCCCCCCeEEEEecCCC
Q 002564 256 KRRLQSV----IREAHD----NAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR 327 (907)
Q Consensus 256 ~~~~~~~----~~~~h~----~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~ 327 (907)
+|..... ...+.. .+.....-.--+..+..++.++.+...+.+..+..++.-........++.......
T Consensus 218 ~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~--- 294 (370)
T COG1520 218 DGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAG--- 294 (370)
T ss_pred CCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecccEeccCCeeEEeecC---
Q ss_pred EEEEEeCCCCEEEEE
Q 002564 328 HILSAGQDRAFRLFS 342 (907)
Q Consensus 328 ~l~s~~~dg~i~iwd 342 (907)
.||.+.++.
T Consensus 295 ------~dG~v~~~~ 303 (370)
T COG1520 295 ------ADGKVYIGF 303 (370)
T ss_pred ------CCccEEEEE
No 495
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=83.85 E-value=41 Score=33.62 Aligned_cols=145 Identities=15% Similarity=0.159 Sum_probs=77.6
Q ss_pred EEEEEccCCceEEEEeecCCCCEEEEEEecCCCCEEEEEeC-C--CcEEEEECCC----ceeeeeee-cccccCeEEEEE
Q 002564 205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGAS-S--GVISIWNLEK----RRLQSVIR-EAHDNAIISLHF 276 (907)
Q Consensus 205 I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~-d--g~I~iwd~~~----~~~~~~~~-~~h~~~V~~l~~ 276 (907)
-.+||+.+++.. .+.....--..+-+|.+||+ ++.+|+. + ..+++++..+ ........ ......-.+..-
T Consensus 48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~-ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGR-LLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcEE-eccCCCCCcccCcCCCCCCC-EEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 468999887643 23322233445556889998 8888873 2 4588888654 11111000 012233345566
Q ss_pred ecCCCEEEEEcCCCc-EEEEEccCCCCCcceeEecc-----CCCCCCeEEEEecCCCEEEEEeCCCCEEEEEceecccce
Q 002564 277 FANEPVLMSASADNS-IKMWIFDTTDGDPRLLRFRS-----GHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR 350 (907)
Q Consensus 277 ~~~~~~l~s~~~d~~-i~vw~~~~~~~~~~~~~~~~-----~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~ 350 (907)
.|||+.|+.||.++. ..+|.-.........+..+. ....---.+...|+|+.++.+..+. .+||..+.+..+
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~ 203 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVR 203 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEe
Confidence 789999999987743 33332111111111111111 0111122455678999998888664 566877665555
Q ss_pred eec
Q 002564 351 ELS 353 (907)
Q Consensus 351 ~~~ 353 (907)
.+.
T Consensus 204 ~lP 206 (243)
T PF07250_consen 204 TLP 206 (243)
T ss_pred eCC
Confidence 443
No 496
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=83.73 E-value=58 Score=33.74 Aligned_cols=166 Identities=10% Similarity=0.096 Sum_probs=93.6
Q ss_pred cEEEEeCCCCccceeeeccccccccCcCCcEEEEEEcCCC-----CEEEEE-ecCCeEEEEECCCCceeeeeec------
Q 002564 447 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN-----TLMISA-GYHGDIKVWDFKGRDLKSRWEV------ 514 (907)
Q Consensus 447 ~i~i~d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-----~~l~s~-~~dg~i~iwd~~~~~~~~~~~~------ 514 (907)
.|.+||+.+++.++.+.-+.... ...+....+.++... .++..+ ...+-|.|+|+.+++..+....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~--~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p 112 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIA--PPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDP 112 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS---TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-
T ss_pred EEEEEECCCCcEEEEEECChHHc--ccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceec
Confidence 68889999999888776432211 135678888888732 233333 3446899999998865443322
Q ss_pred --------------CcceeEEEEee---CCCEEEEEeCCCeEEEEEcccc--------------eeEEEeecCC-CCeee
Q 002564 515 --------------GCSLVKIVYHR---VNGLLATVADDLVIRLFDVVAL--------------RMVRKFEGHT-DRITD 562 (907)
Q Consensus 515 --------------~~~i~~~~~s~---~~~~la~~~~dg~I~v~d~~~~--------------~~~~~~~~h~-~~I~~ 562 (907)
...+..++.+| +++.|....-.+ -++|.+.+. +.+..+ |.. .....
T Consensus 113 ~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g 190 (287)
T PF03022_consen 113 DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDG 190 (287)
T ss_dssp SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECE
T ss_pred cccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cccCCCCce
Confidence 23455566655 555555554322 123333221 112222 222 35667
Q ss_pred EEECCCCcEEEEEeCCCcEEEEEcCCCc---eeeEe-eeCC---ceEEEEECC--CCceEEEE
Q 002564 563 FCFSEDGKWLLSSGMDGSLRIWDVILAR---QIDAI-HVDV---SITALSLSP--NMDVLATA 616 (907)
Q Consensus 563 l~fspdg~~l~s~s~Dg~I~vwd~~~~~---~~~~~-~~~~---~v~~l~~sp--dg~~lat~ 616 (907)
++++++|...++--..+.|..|+..+.- ....+ +.+. -+.++.+.+ +|.+.+.+
T Consensus 191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 8999999998888899999999987521 22222 2222 267888888 66555544
No 497
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.79 E-value=4.8 Score=46.52 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=45.7
Q ss_pred eCCCEEEEEeCCCeEEEEEccc----ceeEEE-----------eec-----------CCCCeeeEEECC----CCcEEEE
Q 002564 525 RVNGLLATVADDLVIRLFDVVA----LRMVRK-----------FEG-----------HTDRITDFCFSE----DGKWLLS 574 (907)
Q Consensus 525 ~~~~~la~~~~dg~I~v~d~~~----~~~~~~-----------~~~-----------h~~~I~~l~fsp----dg~~l~s 574 (907)
++...++++..||.+....... +..... +.+ ..+.+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4677888888888888777654 211111 110 113455666766 6789999
Q ss_pred EeCCCcEEEEEcCCCceeeEee
Q 002564 575 SGMDGSLRIWDVILARQIDAIH 596 (907)
Q Consensus 575 ~s~Dg~I~vwd~~~~~~~~~~~ 596 (907)
.+.|+++|+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999976653
No 498
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=82.61 E-value=1e+02 Score=35.65 Aligned_cols=113 Identities=14% Similarity=0.235 Sum_probs=70.5
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEEcc-CCceEEEEeecCCCCEEEEEEecCC--CCEEEEEeCC-CcEEEEECCCc----
Q 002564 186 SCVSSPALDVVAVGCSDGKIHVHNVR-YDEELVTFTHSMRGAVTALAFSSDG--QPLLASGASS-GVISIWNLEKR---- 257 (907)
Q Consensus 186 ~l~~sp~~~~la~g~~dg~I~iwd~~-~~~~~~~~~~~~~~~v~~l~fs~dg--~~~l~sg~~d-g~I~iwd~~~~---- 257 (907)
+..++|+.+.+-.|=....|--|=+. |.+.+..+.-.....|.||..-... ..+.++|-.+ +.-++-.+..+
T Consensus 32 s~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~ 111 (670)
T PF10395_consen 32 SDDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGST 111 (670)
T ss_pred ecccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccc
Confidence 33567777777666555556555543 5677777776666777887765331 2244445333 32333333222
Q ss_pred -------eeeeeeecccccCeEEEEEecCCCEEEEEcCCCcEEEEEcc
Q 002564 258 -------RLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFD 298 (907)
Q Consensus 258 -------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~vw~~~ 298 (907)
+....+...-...|.++.|.+++..+++.-.+|.|.+|+++
T Consensus 112 ~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~ 159 (670)
T PF10395_consen 112 EDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFS 159 (670)
T ss_pred cccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEecc
Confidence 11122222346789999999999999999999999999993
No 499
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.29 E-value=1.4e+02 Score=37.07 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=45.7
Q ss_pred CcCCcEEEEEEcCCCCEEEEEecCCeEEEEECCCCceeeeeecCcceeEEEEeeCCCEEEEEeCCCeEEEEEccccee
Q 002564 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM 549 (907)
Q Consensus 472 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~ 549 (907)
-+..++.+..+...+.... +...+.+-+|+.........+.....-. ++++..++++..||.+..||...++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 196 LIEYESLQVLYYSPTKILI-GFNRGLVVIKDRASKYVQSAYLPNGQLE----SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccccccceeeeecCCCcce-eeeeeeeeehhcccccchhhcccccccC----ccCCceEEEEEecCCEEeeecCCCce
Confidence 3455555655554444333 3444677777765544444333322111 77899999999999999999988755
No 500
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.09 E-value=42 Score=41.43 Aligned_cols=70 Identities=19% Similarity=0.240 Sum_probs=42.0
Q ss_pred cceeEEEEeeCCCEEEEEeCCCeEEEEEcccceeEEEeecCCCCeeeEEECCCCcEEEEEeCCCcEEEEEcCCCce
Q 002564 516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 591 (907)
Q Consensus 516 ~~i~~~~~s~~~~~la~~~~dg~I~v~d~~~~~~~~~~~~h~~~I~~l~fspdg~~l~s~s~Dg~I~vwd~~~~~~ 591 (907)
.++.+..+...+..+. +..-+.+-+|+.........+. +.....++++..++++..||.+.+||...|+.
T Consensus 199 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 199 YESLQVLYYSPTKILI-GFNRGLVVIKDRASKYVQSAYL-----PNGQLESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cccceeeeecCCCcce-eeeeeeeeehhcccccchhhcc-----cccccCccCCceEEEEEecCCEEeeecCCCce
Confidence 3444444444343332 3334556666554433333332 22222288999999999999999999998865
Done!