Query 002564
Match_columns 907
No_of_seqs 1186 out of 4449
Neff 10.5
Searched_HMMs 29240
Date Tue Mar 26 16:50:31 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002564.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1281-1285//hhsearch_pdb/002564hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 1.0 1 1 525.6 75.7 563 4-627 7-577 (577)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 521.3 60.9 530 50-630 609-1158(1249)
3 1nr0_A Actin interacting prote 1.0 1 1 519.4 68.2 562 15-629 18-610 (611)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 503.5 63.7 559 22-628 623-1247(1249)
5 1nr0_A Actin interacting prote 1.0 1 1 487.4 61.4 526 54-630 16-567 (611)
6 2ymu_A WD-40 repeat protein; u 1.0 1 1 485.5 73.5 520 50-628 10-537 (577)
7 1pgu_A Actin interacting prote 1.0 1 1 477.1 65.1 535 23-630 27-614 (615)
8 1pgu_A Actin interacting prote 1.0 1 1 449.3 58.5 512 53-631 15-573 (615)
9 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 448.3 54.2 565 54-655 15-795 (902)
10 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 446.1 60.9 601 3-628 5-829 (902)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=525.58 Aligned_cols=563 Identities=21% Similarity=0.324 Sum_probs=469.6
Q ss_pred CCCCEEEEEECCCCCEEEEECCCEEEEEEEECCEEEEEECCCCEEEEECCCCCCCEEEEEEECCEEEEEECC---EEEEE
Q ss_conf 544303576139962058870981999998099599997596557873377896608999956817999969---39999
Q 002564 4 FEPYKAIGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGN---HIAVV 80 (907)
Q Consensus 4 ~~~~r~~g~v~~~~~~~~~~~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~ia~~~~~~~~a~g~---~I~vw 80 (907)
-...|.-|+ ++.|.-....++++++++++.|++++|||. +++++....+|...|++++|+|++.++++++ .|++|
T Consensus 7 ~e~~~L~GH-~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vW 84 (577)
T 2ymu_A 7 KERNRLEAH-SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 84 (577)
T ss_dssp CEEEEECCC-SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEEECCC-CCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
T ss_conf 894398789-985799999899899999938998999979-997899996898998999998999999999698979999
Q ss_pred EC-CEEEEEECCCCCCEEEEEE--ECCEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCEEEEE
Q ss_conf 68-9058997056554589976--29989999558829999548887665321269628975528998289997899999
Q 002564 81 KR-AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVG 157 (907)
Q Consensus 81 ~~-~~~~~~~~~h~~~V~~l~~--~g~~l~s~~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~g 157 (907)
+. ++.+..+.+|...|.++++ ++++|++++.|+.+++|+..... ......+...+....++|++ ..++.+
T Consensus 85 d~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~--~~~~~~ 157 (577)
T 2ymu_A 85 NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-----LQTLTGHSSSVWGVAFSPDG--QTIASA 157 (577)
T ss_dssp ETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE-----EEEECCCSSCEEEEEECTTS--SCEEEE
T ss_pred ECCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECCCCCCE-----EEECCCCCCCEEEEEEECCC--CCCEEC
T ss_conf 89997899997899988999998999989998079833520235520-----01104777743555420377--632002
Q ss_pred ECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCC
Q ss_conf 66880999966899199999289998799999699989999956994999991089148999406997789999801999
Q 002564 158 SQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQ 237 (907)
Q Consensus 158 s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~ 237 (907)
+.++.+.+|+. ..........|...|.++.++|+++++++++.|+.|++|+. +++.+..+..+ ...|.+++|+|++.
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~-~~~v~~~~~s~dg~ 234 (577)
T 2ymu_A 158 SDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSSVRGVAFSPDGQ 234 (577)
T ss_dssp ETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECC-SSCEEEEEECTTSS
T ss_pred CCCCCEECCCC-CEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEEC-CCCEEEEEECC-CCCEEEEEECCCCC
T ss_conf 55531000000-00000002687763566541699778999859998999949-99689999468-89889999979999
Q ss_pred CEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCC
Q ss_conf 97999949984999988986021234124346838999955999999983999679999037999861247414889999
Q 002564 238 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPP 317 (907)
Q Consensus 238 ~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v 317 (907)
++++++.|+.|++||. +++.+..+. +|...|.+++|+|+++.+++++.|+.+++|+.+. .....+.+|...+
T Consensus 235 -~l~~~~~d~~i~~w~~-~~~~~~~~~-~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-----~~~~~~~~h~~~v 306 (577)
T 2ymu_A 235 -TIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSV 306 (577)
T ss_dssp -CEEEEETTSCEEEECT-TSCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-----CEEEEECCCSSCE
T ss_pred -EEEEEECCCEEEEEEC-CCCEEEEEE-CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-----CEEEEEECCCCCE
T ss_conf -9999918998999959-997999980-6889879999968999999995999799994899-----5899970688976
Q ss_pred EEEEEECCCCEEEEEECCCCEEEEECEECCCCEEECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEE
Q ss_conf 68999349989999948997799980202432142024566988510200221046833486402211345430289860
Q 002564 318 LCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHM 397 (907)
Q Consensus 318 ~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 397 (907)
.+++|+|++..+++++.|+.+++|+...... ..+. ....++.++.+++ +.. .++.+.
T Consensus 307 ~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~-~~~~-----------------~~~~~v~~~~~s~----~g~-~l~~~~ 363 (577)
T 2ymu_A 307 WGVAFSPDGQTIASASDDKTVKLWNRNGQHL-QTLT-----------------GHSSSVWGVAFSP----DGQ-TIASAS 363 (577)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTSCEE-EEEC-----------------CCSSCEEEEEECT----TSS-EEEEEE
T ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCEE-EEEE-----------------CCCCCEEEEEECC----CCC-EEEEEE
T ss_conf 9999999999999996999599996999725-7874-----------------7889779999989----999-999996
Q ss_pred CCCEEEEEEEEECEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf 99609999901011042432059999986499999679989999947991999968889510144066622356767757
Q 002564 398 DTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEV 477 (907)
Q Consensus 398 ~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v 477 (907)
.++.+++|+..... +.....|...+++++++|+|+++++++.++.|++|+.. +.....+. +|...|
T Consensus 364 ~dg~v~~~~~~~~~-----~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~--------~~~~~v 429 (577)
T 2ymu_A 364 DDKTVKLWNRNGQL-----LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLT--------GHSSSV 429 (577)
T ss_dssp TTSEEEEEETTCCE-----EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEE--------CCSSCE
T ss_pred CCCEEEEECCCCCE-----EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC-CCEEEEEC--------CCCCCE
T ss_conf 99989999089978-----99852788974899998999999999499989999699-97898962--------889975
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE-ECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECC
Q ss_conf 99999599998999956770999987987612223-31865269999207988999938983999992366268996059
Q 002564 478 VGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH 556 (907)
Q Consensus 478 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~i~~i~~s~~~~~la~~~~dg~i~i~d~~~~~~~~~~~~h 556 (907)
++++|+|+++++++++.|+.|++|+... +....+ .+...+.+++|+|+++++++++.|+.|++||. ++++++.+.+|
T Consensus 430 ~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h 507 (577)
T 2ymu_A 430 WGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH 507 (577)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTS-CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECC
T ss_pred EEEEECCCCCEEEEECCCCEEEEEECCC-CEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEECC-CCCEEEEEECC
T ss_conf 7999989999999993999899997999-889997278997789999699999999919897999939-99789998679
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECC-CEEEEEECCCCCEEEEEEECCCEEEEEE
Q ss_conf 9970038987899699999189819999769774126764087-2579997789763799873697499964
Q 002564 557 TDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITALSLSPNMDVLATAHVDQNGVYLWV 627 (907)
Q Consensus 557 ~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~l~~spdg~~lat~~~d~~~i~iW~ 627 (907)
...|++++|+||+++|++++.|+.|++||. +++++..+..|. +|++++|+|||++|++++.|+ .|++|+
T Consensus 508 ~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~-~i~~Wd 577 (577)
T 2ymu_A 508 SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDK-TVKLWN 577 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTS-CEEEEC
T ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC-EEEEEC
T ss_conf 999899999189999999989699999969-9978989718888878999968999999990899-999969
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=521.32 Aligned_cols=530 Identities=17% Similarity=0.221 Sum_probs=438.8
Q ss_pred EECCCCCCCEEEEEEECCEEEEEECC---EEEEEEC--CEEEEEECCCCCCEEEEEE--ECCEEEEEECCCCEEEEECCC
Q ss_conf 73377896608999956817999969---3999968--9058997056554589976--299899995588299995488
Q 002564 50 LVGPQLPKKIRALASYRDYTFAAYGN---HIAVVKR--AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKG 122 (907)
Q Consensus 50 ~~~~~~~~~I~~ia~~~~~~~~a~g~---~I~vw~~--~~~~~~~~~h~~~V~~l~~--~g~~l~s~~~dg~i~iWd~~~ 122 (907)
....+|...|++++|+|++.++++|+ .|++|+. ++.+..+.+|...|.++++ +|++|++++.||.|++||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCC
T ss_conf 78716666489999879999899994889499999899978887606777789999926999899981899599987799
Q ss_pred CCCCCCCEEEEECCCCCCCEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 87665321269628975528998289997899999668809999668991999992899987999996999899999569
Q 002564 123 IEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSD 202 (907)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~d 202 (907)
++. +..+..+...+..+.|+|++....+++|+.||.|++||+.+++++..+.+|...|++++|+|+++++++++.|
T Consensus 689 ~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d 764 (1249)
T 3sfz_A 689 GKL----VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 764 (1249)
T ss_dssp CCE----EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred CCE----EEEECCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHEECCCCCCEEEEEEECCCCEEEEEECC
T ss_conf 936----8999589973799998408996599998089709999899963422012777978899992599989999789
Q ss_pred CEEEEEECCCCCEEEEEEEC------------CCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCC
Q ss_conf 94999991089148999406------------997789999801999979999499849999889860212341243468
Q 002564 203 GKIHVHNVRYDEELVTFTHS------------MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA 270 (907)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~------------~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~ 270 (907)
|.|++||+.+++....+... ....+.+++|+|++. .+++++ ++.+.+||+.++.....+..+|...
T Consensus 765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~ 842 (1249)
T 3sfz_A 765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD-KIIVAA-KNKVLLFDIHTSGLLAEIHTGHHST 842 (1249)
T ss_dssp SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSS-EEEEEE-TTEEEEEETTTCCEEEEEECSSSSC
T ss_pred CEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCC-EEEEEC-CCCEEEEEECCCCCEEEECCCCCCC
T ss_conf 85999968888655302023210246776445650179999978998-899975-8959999956897235774787776
Q ss_pred EEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECEECCCCE
Q ss_conf 38999955999999983999679999037999861247414889999689993499899999489977999802024321
Q 002564 271 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR 350 (907)
Q Consensus 271 V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~ 350 (907)
|.+++|+|++..+++++.|+.|++|+++.. .......+|...|.+++|+|++..+++++.|+.+++|++.......
T Consensus 843 v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~----~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~ 918 (1249)
T 3sfz_A 843 IQYCDFSPYDHLAVIALSQYCVELWNIDSR----LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNS 918 (1249)
T ss_dssp CCEEEECSSTTEEEEECSSSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCC
T ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCC----CEEEECCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE
T ss_conf 079998278888999947986999986789----5653227876656899998999989999589728988746652010
Q ss_pred EECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECEECCEEEECCCCCCCCEEEE
Q ss_conf 42024566988510200221046833486402211345430289860996099999010110424320599999864999
Q 002564 351 ELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKAC 430 (907)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~ 430 (907)
.... ........ ......+........+..+......... .....+.++
T Consensus 919 ~~~~-------------------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~ 967 (1249)
T 3sfz_A 919 AIVL-------------------KQEIDVVF-----QENETMVLAVDNIRGLQLIAGKTGQIDY-------LPEAQVSCC 967 (1249)
T ss_dssp SSSE-------------------EEEEEEEE-----ETTEEEEEEEESSSSEEEEEESSCCEEE-------ECCSCEEEE
T ss_pred EECC-------------------CCEEEEEE-----CCCCCEEEEECCCCCEEEEECCCCEEEE-------CCCCCEEEE
T ss_conf 2113-------------------31036897-----5998689981377624898447650897-------256727899
Q ss_pred EECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE
Q ss_conf 99679989999947991999968889510144066622356767757999995999989999567709999879876122
Q 002564 431 TISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS 510 (907)
Q Consensus 431 ~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 510 (907)
+++|+++++++|+.+|.|.+|++.++.....+. +|...|.+++|+|+++++++++.||.|++|++.+++...
T Consensus 968 ~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~--------~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A 968 CLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV--------GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp EECTTSSEEEEEETTSCCEEEETTTTSCEEECC--------CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC
T ss_pred EECCCCCEEEEECCCCCEEEEECCCCCEEEECC--------CCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEE
T ss_conf 995899779998699988999757872344303--------677716899998999989998699879999879996689
Q ss_pred EEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 23318652699992079889999389839999923662689960599970038987899699999189819999769774
Q 002564 511 RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590 (907)
Q Consensus 511 ~~~~~~~i~~i~~s~~~~~la~~~~dg~i~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~ 590 (907)
...+...+.++.+++++ .+++++.|+.|++||+.+++....+.+|.+.|++++|+|+++++++++.|++|++||+.+++
T Consensus 1040 ~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~ 1118 (1249)
T 3sfz_A 1040 LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS 1118 (1249)
T ss_dssp CBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS
T ss_pred EECCCCCEEEEEECCCC-CEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCC
T ss_conf 85278738999990899-58999788968998889886558874668848999998999989998499948998789850
Q ss_pred EEEEEEECCC-EEEEEECCCCCEEEEEEECCCEEEEEECCC
Q ss_conf 1267640872-579997789763799873697499964454
Q 002564 591 QIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (907)
Q Consensus 591 ~i~~~~~~~~-v~~l~~spdg~~lat~~~d~~~i~iW~~~~ 630 (907)
++..+..|.. |++++|+|+|.+|++++.|+ .|++|+...
T Consensus 1119 ~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg-~i~vwd~~~ 1158 (1249)
T 3sfz_A 1119 PLHELKGHNGCVRCSAFSLDGILLATGDDNG-EIRIWNVSD 1158 (1249)
T ss_dssp CSBCCCCCSSCEEEEEECSSSSEEEEEETTS-CCCEEESSS
T ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCC-EEEEEECCC
T ss_conf 0125506877679999979999899982899-799998899
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=519.43 Aligned_cols=562 Identities=14% Similarity=0.188 Sum_probs=452.1
Q ss_pred CCCCEEEEE-CCCEEEEEEEECCEEEEEECCCCEEEEECCCCCCCEEEEEEECCEEEEEECC---EEEEEECC----EEE
Q ss_conf 996205887-0981999998099599997596557873377896608999956817999969---39999689----058
Q 002564 15 SSVPFSVQR-LGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGN---HIAVVKRA----HQV 86 (907)
Q Consensus 15 ~~~~~~~~~-~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~ia~~~~~~~~a~g~---~I~vw~~~----~~~ 86 (907)
.+.+.++.. ++++.+++++ ++++++||+.++.......+|...|++++|+|++.++|+|+ .|++|+.. ...
T Consensus 18 ~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~ 96 (611)
T 1nr0_A 18 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 96 (611)
T ss_dssp TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred CCCEEEEEECCCCCEEEECC-CCEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEE
T ss_conf 68236976679999799679-99799945787242737658998659999999996899994899789948989841566
Q ss_pred EEECCCCCCEEEEEE--ECCEEEEEECC----CCEEEEECCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCEEEEEECC
Q ss_conf 997056554589976--29989999558----829999548887665321269628975528998289997899999668
Q 002564 87 ATWSRHSAKVNLLLL--FGEHILSIDID----GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE 160 (907)
Q Consensus 87 ~~~~~h~~~V~~l~~--~g~~l~s~~~d----g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~gs~d 160 (907)
..+.+|.+.|.+++| +|++|++++.+ +.|++|| .+.. ...+..|...+..+.|+|++. ..+++++.|
T Consensus 97 ~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~----~~~l~gh~~~v~~v~f~p~~~-~~l~s~s~D 169 (611)
T 1nr0_A 97 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTS----NGNLTGQARAMNSVDFKPSRP-FRIISGSDD 169 (611)
T ss_dssp EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCB----CBCCCCCSSCEEEEEECSSSS-CEEEEEETT
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEE--CCCC----CCEECCCCCCCEEEEECCCCC-EEEEEEECC
T ss_conf 762255784489998999997999989977366999963--8997----632547889836999889998-299999289
Q ss_pred CCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEE------CCCCCEEEEEEEC
Q ss_conf 8099996689919999928999879999969998999995699499999108914899940------6997789999801
Q 002564 161 GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTH------SMRGAVTALAFSS 234 (907)
Q Consensus 161 g~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~------~~~~~v~~l~fs~ 234 (907)
++|++||..++++...+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.. .|.+.|.+++|+|
T Consensus 170 ~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp 249 (611)
T 1nr0_A 170 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249 (611)
T ss_dssp SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECC
T ss_conf 80999979997576652002571699999799998999989991999889998286651366432356678789999979
Q ss_pred CCCCEEEEEECCCCEEEEECCCCEEEEEEECC--CCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCEEEECCC
Q ss_conf 99997999949984999988986021234124--3468389999559999999839996799990379998612474148
Q 002564 235 DGQPLLASGASSGVISIWNLEKRRLQSVIREA--HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSG 312 (907)
Q Consensus 235 dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~ 312 (907)
+++ +|++++.|+.|++||+.++++...+..+ +...+..+.| ++..+++++.|+.+++|+.... .....+.+
T Consensus 250 dg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~----~~~~~~~g 322 (611)
T 1nr0_A 250 DGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELG----SIDQVRYG 322 (611)
T ss_dssp TSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTT----EEEEEECC
T ss_pred CCC-EEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEE--CCCEEEEEECCCCEEEEECCCC----CCCEEECC
T ss_conf 999-9999908980999968887013440478876640689997--3887999958996899968899----74469837
Q ss_pred CCCCCEEEEEECCCCEEEEEECCCCEEEEECEECCCCEEECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCE
Q ss_conf 89999689993499899999489977999802024321420245669885102002210468334864022113454302
Q 002564 313 HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNV 392 (907)
Q Consensus 313 h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 392 (907)
|...|.+++|+|+++++++++.|+.+++|++.++.....+.. .....+..+.++. + ..
T Consensus 323 h~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~----------------~h~~~v~~~~~s~----~--~~ 380 (611)
T 1nr0_A 323 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD----------------VHATMITGIKTTS----K--GD 380 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC----------------SCSSCEEEEEECT----T--SC
T ss_pred CCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEECCC----------------CCCCEEEEEEECC----C--CC
T ss_conf 888889999918999899995898499997887925632166----------------7765078999878----9--96
Q ss_pred EEEEECCCEEEEEEEEECEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCC
Q ss_conf 89860996099999010110424320599999864999996799899999479919999688895101440666223567
Q 002564 393 VTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA 472 (907)
Q Consensus 393 ~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 472 (907)
+.....++.+++|+............ .........+++++|+|..++++ .++.+.+|+. +. ...+ .
T Consensus 381 l~s~s~d~~v~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~~~~~-~~~~v~~~~~--~~-~~~~---------~ 446 (611)
T 1nr0_A 381 LFTVSWDDHLKVVPAGGSGVDSSKAV-ANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSH--GK-LTEV---------P 446 (611)
T ss_dssp EEEEETTTEEEEECSSSSSSCTTSCC-EEECSSCEEEEEECTTSSCEEEE-ESSEEEEEET--TE-EEEE---------E
T ss_pred EEEEECCCCEEEEECCCCCCCCCCEE-EEECCCCCCEEEEECCCCEEEEE-ECCEEEEEEC--CC-EEEE---------E
T ss_conf 99998489668954688543565212-00148997079980799699999-6763999848--94-3464---------0
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE--EEEEECCCCEEEEEEEECCCEEEEEECCCEEEEEECCC-CEE
Q ss_conf 677579999959999899995677099998798761--22233186526999920798899993898399999236-626
Q 002564 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL--KSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVA-LRM 549 (907)
Q Consensus 473 h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~i~~i~~s~~~~~la~~~~dg~i~i~d~~~-~~~ 549 (907)
|...+.+++|+|+++++++++.|+.|++|++.++.. .....+...|.+++|+|++++|++++.|+.|++|++.+ +++
T Consensus 447 ~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~ 526 (611)
T 1nr0_A 447 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL 526 (611)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred CCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCE
T ss_conf 68895499992899899996899739999945992224101577886079999899998999948998999885778722
Q ss_pred EEE--EECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC-EE-EEEEEC--CCEEEEEECCCCCEEEEEEECCCEE
Q ss_conf 899--60599970038987899699999189819999769774-12-676408--7257999778976379987369749
Q 002564 550 VRK--FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR-QI-DAIHVD--VSITALSLSPNMDVLATAHVDQNGV 623 (907)
Q Consensus 550 ~~~--~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~-~i-~~~~~~--~~v~~l~~spdg~~lat~~~d~~~i 623 (907)
... +.+|...|++++|+|||++|++++.|++|++|++.++. .. ..+..| ..|.+++|+|++. |++++.|+ .|
T Consensus 527 ~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~-~i 604 (611)
T 1nr0_A 527 AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDS-NI 604 (611)
T ss_dssp SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTS-CE
T ss_pred EEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCHHHCCCCCCCEEEEEECCCCE-EEEECCCC-CE
T ss_conf 32102640466425899899899799997997299997887555632644467656711899858997-99952887-78
Q ss_pred EEEECC
Q ss_conf 996445
Q 002564 624 YLWVNR 629 (907)
Q Consensus 624 ~iW~~~ 629 (907)
++|++.
T Consensus 605 ~lW~~~ 610 (611)
T 1nr0_A 605 KFWNVP 610 (611)
T ss_dssp EEEECC
T ss_pred EEEECC
T ss_conf 998444
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=503.53 Aligned_cols=559 Identities=17% Similarity=0.227 Sum_probs=464.4
Q ss_pred EECCCEEEEEEEECCEEEEEECCCCEEEEECCCCCCCEEEEEEECCEEEEEECC---EEEEEEC--CEEEEEECCCCCCE
Q ss_conf 870981999998099599997596557873377896608999956817999969---3999968--90589970565545
Q 002564 22 QRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYGN---HIAVVKR--AHQVATWSRHSAKV 96 (907)
Q Consensus 22 ~~~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~ia~~~~~~~~a~g~---~I~vw~~--~~~~~~~~~h~~~V 96 (907)
..+++.++++++.|+++++||..+++.+....+|...|++++|+|++.++++++ .|++|+. ++.+..+.+|...|
T Consensus 623 ~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v 702 (1249)
T 3sfz_A 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQV 702 (1249)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred ECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCE
T ss_conf 87999989999488949999989997888760677778999992699989998189959998779993689995899737
Q ss_pred EEEEE----ECCEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCEEEEEECCCCEEEEECCCCE
Q ss_conf 89976----29989999558829999548887665321269628975528998289997899999668809999668991
Q 002564 97 NLLLL----FGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKK 172 (907)
Q Consensus 97 ~~l~~----~g~~l~s~~~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~gs~dg~i~iwd~~~~~ 172 (907)
.++.+ ++..+++++.|+.|++||+.++.. ...+..|...+..+.|+|++ +.+++++.||.|++||+.+++
T Consensus 703 ~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~----~~~~~~h~~~v~~~~~sp~~--~~l~s~s~dg~v~vwd~~~~~ 776 (1249)
T 3sfz_A 703 NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC----RNTMFGHTNSVNHCRFSPDD--ELLASCSADGTLRLWDVRSAN 776 (1249)
T ss_dssp EEEEECSSSSCCEEEEEETTSCEEEEETTSSSE----EEEECCCSSCEEEEEECSST--TEEEEEESSSEEEEEEGGGTE
T ss_pred EEEEEECCCCCEEEEEEECCCEEEEEECCCCCH----HHEECCCCCCEEEEEEECCC--CEEEEEECCCEEEEEECCCCC
T ss_conf 999984089965999980897099998999634----22012777978899992599--989999789859999688886
Q ss_pred EEEEECC-------------CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCE
Q ss_conf 9999928-------------999879999969998999995699499999108914899940699778999980199997
Q 002564 173 KLYEFKG-------------WGSSISSCVSSPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPL 239 (907)
Q Consensus 173 ~~~~~~~-------------h~~~I~~l~~sp~~~~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~ 239 (907)
....+.. ....+.+++|+|+++.+++++ ++.+.+|++.++..+..+...|...+.+++|+|++. +
T Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~ 854 (1249)
T 3sfz_A 777 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-L 854 (1249)
T ss_dssp EEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT-E
T ss_pred CCCEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEC-CCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCCC-E
T ss_conf 55302023210246776445650179999978998899975-895999995689723577478777607999827888-8
Q ss_pred EEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCC--------------
Q ss_conf 999949984999988986021234124346838999955999999983999679999037999861--------------
Q 002564 240 LASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR-------------- 305 (907)
Q Consensus 240 l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~-------------- 305 (907)
+++++.+|.|++|++.++.....+. +|...|.+++|+|++..+++++.|+.+++|++........
T Consensus 855 l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1249)
T 3sfz_A 855 AVIALSQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQEN 933 (1249)
T ss_dssp EEEECSSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETT
T ss_pred EEEEECCCEEEEEECCCCCEEEECC-CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCC
T ss_conf 9999479869999867895653227-876656899998999989999589728988746652010211331036897599
Q ss_pred --------------EE-----EECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECEECCCCEEECHHHHHHHHHHCCC
Q ss_conf --------------24-----74148899996899934998999994899779998020243214202456698851020
Q 002564 306 --------------LL-----RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKM 366 (907)
Q Consensus 306 --------------~~-----~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 366 (907)
.. .....+...+.+++|+|++.++++++.+|.+++|++.++.....+..
T Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~------------ 1001 (1249)
T 3sfz_A 934 ETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG------------ 1001 (1249)
T ss_dssp EEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCC------------
T ss_pred CCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEECCC------------
T ss_conf 86899813776248984476508972567278999958997799986999889997578723443036------------
Q ss_pred HHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 02210468334864022113454302898609960999990101104243205999998649999967998999994799
Q 002564 367 KEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG 446 (907)
Q Consensus 367 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg 446 (907)
...++..+.+++ +.. .+..+..++.+++|+..+.... ....+...+.++++++++ .+++++.+|
T Consensus 1002 -----h~~~v~~l~~s~----dg~-~l~s~~~dg~i~vwd~~~~~~~-----~~~~~~~~v~~~~~~~~~-~l~~~~~dg 1065 (1249)
T 3sfz_A 1002 -----HKKAVRHIQFTA----DGK-TLISSSEDSVIQVWNWQTGDYV-----FLQAHQETVKDFRLLQDS-RLLSWSFDG 1065 (1249)
T ss_dssp -----CSSCCCCEEECS----SSS-CEEEECSSSBEEEEETTTTEEE-----CCBCCSSCEEEEEECSSS-EEEEEESSS
T ss_pred -----CCCCEEEEEECC----CCC-EEEEECCCCEEEEEECCCCCEE-----EEECCCCCEEEEEECCCC-CEEEEECCC
T ss_conf -----777168999989----999-8999869987999987999668-----985278738999990899-589997889
Q ss_pred CEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECC-CCEEEEEEEE
Q ss_conf 199996888951014406662235676775799999599998999956770999987987612223318-6526999920
Q 002564 447 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG-CSLVKIVYHR 525 (907)
Q Consensus 447 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~i~~i~~s~ 525 (907)
.|++|++.++.....+. +|.+.|.+++|+|+++++++++.||.|++||+.+++....+..+ ..+.+++|+|
T Consensus 1066 ~v~vwd~~~~~~~~~~~--------~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~ 1137 (1249)
T 3sfz_A 1066 TVKVWNVITGRIERDFT--------CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL 1137 (1249)
T ss_dssp EEEEEETTTTCCCEEEE--------CCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECS
T ss_pred CEEEEECCCCCEEEEEC--------CCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCEEEEEECC
T ss_conf 68998889886558874--------6688489999989999899984999489987898500125506877679999979
Q ss_pred CCCEEEEEECCCEEEEEECCCCEEEEEE---------ECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEE
Q ss_conf 7988999938983999992366268996---------0599970038987899699999189819999769774126764
Q 002564 526 VNGLLATVADDLVIRLFDVVALRMVRKF---------EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH 596 (907)
Q Consensus 526 ~~~~la~~~~dg~i~i~d~~~~~~~~~~---------~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~ 596 (907)
++.++++++.||.|++||+.+++.+..+ .+|.+.|++++|+||+++|++++ |.|++||+.+++.+..+.
T Consensus 1138 dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~ 1215 (1249)
T 3sfz_A 1138 DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFY 1215 (1249)
T ss_dssp SSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCC
T ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEECC--CEEEEEECCCCCEEEEEE
T ss_conf 999899982899799998899945788514444421025674289999978999899779--859998988895004640
Q ss_pred ECC-CEEEEEECCCCCEEEEEEECCCEEEEEEC
Q ss_conf 087-25799977897637998736974999644
Q 002564 597 VDV-SITALSLSPNMDVLATAHVDQNGVYLWVN 628 (907)
Q Consensus 597 ~~~-~v~~l~~spdg~~lat~~~d~~~i~iW~~ 628 (907)
.+. ++.+++|+|+|.+|++++.|| .|++|++
T Consensus 1216 ~~~~~i~~~~~s~dg~~l~~~~~dg-~v~vw~l 1247 (1249)
T 3sfz_A 1216 TNGTNLKKIHVSPDFRTYVTVDNLG-ILYILQV 1247 (1249)
T ss_dssp CSSCCCCCCEECSSSCCEEEECTTC-CEEEECC
T ss_pred CCCCCCCEEEECCCCCEEEEECCCC-EEEEEEE
T ss_conf 0477532799978987799966881-7999764
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=487.35 Aligned_cols=526 Identities=15% Similarity=0.182 Sum_probs=347.7
Q ss_pred CCCCCEEEEEEECCEEEEEE--CCEEEEEEC--CEEEEEECCCCCCEEEEEE--ECCEEEEEECCCCEEEEECCCCCCCC
Q ss_conf 78966089999568179999--693999968--9058997056554589976--29989999558829999548887665
Q 002564 54 QLPKKIRALASYRDYTFAAY--GNHIAVVKR--AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENL 127 (907)
Q Consensus 54 ~~~~~I~~ia~~~~~~~~a~--g~~I~vw~~--~~~~~~~~~h~~~V~~l~~--~g~~l~s~~~dg~i~iWd~~~~~~~~ 127 (907)
.+.+.+.+++|+|++.++++ ++.|++|+. ++....+.+|...|+++++ +|++|++++.|++|++||+.+++..
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~- 94 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI- 94 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-
T ss_pred CCCCCEEEEEECCCCCEEEECCCCEEEEECCCCCCCCEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCE-
T ss_conf 4068236976679999799679997999457872427376589986599999999968999948997899489898415-
Q ss_pred CCEEEEECCCCCCCEEEECCCCCCCEEEEEECC----CCEEEEECCCCEEEEEECCCCCCEEEEEECCCCC-EEEEEECC
Q ss_conf 321269628975528998289997899999668----8099996689919999928999879999969998-99999569
Q 002564 128 APVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE----GSLQLWNISTKKKLYEFKGWGSSISSCVSSPALD-VVAVGCSD 202 (907)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~p~~~~~~l~~gs~d----g~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~-~la~g~~d 202 (907)
....+..+...+..+.|+|++ +.+++++.+ +.|++|| .++....+.+|...|.+++|+|++. .+++|+.|
T Consensus 95 -~~~~~~~~~~~v~~v~fs~dg--~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D 169 (611)
T 1nr0_A 95 -LKTTIPVFSGPVKDISWDSES--KRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD 169 (611)
T ss_dssp -EEEEEECSSSCEEEEEECTTS--CEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETT
T ss_pred -EEEEECCCCCCEEEEEECCCC--CEEEEEECCCCCEEEEEEEE--CCCCCCEECCCCCCCEEEEECCCCCEEEEEEECC
T ss_conf -667622557844899989999--97999989977366999963--8997632547889836999889998299999289
Q ss_pred CEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEEC------CCCCCEEEEEE
Q ss_conf 949999910891489994069977899998019999799994998499998898602123412------43468389999
Q 002564 203 GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIRE------AHDNAIISLHF 276 (907)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~------~h~~~V~~l~~ 276 (907)
+.|++||..+++....+..| ...|.+++|+|+++ ++++++.|+.|++||+.+++....+.. +|.+.|.+++|
T Consensus 170 ~~v~lwd~~~~~~~~~l~~H-~~~V~~v~fspdg~-~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~ 247 (611)
T 1nr0_A 170 NTVAIFEGPPFKFKSTFGEH-TKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW 247 (611)
T ss_dssp SCEEEEETTTBEEEEEECCC-SSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE
T ss_pred CEEEEEECCCCEEEEEECCC-CCCEEEEEECCCCC-EEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEE
T ss_conf 80999979997576652002-57169999979999-89999899919998899982866513664323566787899999
Q ss_pred ECCCCEEEEECCCCCEEEEECCCCCCCCCEEEECCC---CCCCCEEEEEECCCCEEEEEECCCCEEEEECEECCCCEEEC
Q ss_conf 559999999839996799990379998612474148---89999689993499899999489977999802024321420
Q 002564 277 FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSG---HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELS 353 (907)
Q Consensus 277 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~---h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~ 353 (907)
+|++.+|++++.|++|++|++... .....+.. +......+.| ++..+++++.|+.+++|+...+.....+.
T Consensus 248 spdg~~l~s~s~D~~v~lWd~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~ 321 (611)
T 1nr0_A 248 SPDGTKIASASADKTIKIWNVATL----KVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRY 321 (611)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred CCCCCEEEEEECCCEEEEEECCCC----CEEEEECCCCCCCCEEEEEEE--CCCEEEEEECCCCEEEEECCCCCCCEEEC
T ss_conf 799999999908980999968887----013440478876640689997--38879999589968999688997446983
Q ss_pred HHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECEECCEEEECCCCCCCCEEEEEEC
Q ss_conf 24566988510200221046833486402211345430289860996099999010110424320599999864999996
Q 002564 354 QRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS 433 (907)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s 433 (907)
. ...++.++.+++ +.. .+.....++.+++|+..+..... .....|...+.+++++
T Consensus 322 g-----------------h~~~v~~l~~sp----dg~-~l~s~s~D~~v~~Wd~~~~~~~~---~~~~~h~~~v~~~~~s 376 (611)
T 1nr0_A 322 G-----------------HNKAITALSSSA----DGK-TLFSADAEGHINSWDISTGISNR---VFPDVHATMITGIKTT 376 (611)
T ss_dssp C-----------------CSSCEEEEEECT----TSS-EEEEEETTSCEEEEETTTCCEEE---CSSCSCSSCEEEEEEC
T ss_pred C-----------------CCCCEEEEEEEC----CCC-EEEEEECCCCEEEEECCCCCEEE---ECCCCCCCEEEEEEEC
T ss_conf 7-----------------888889999918----999-89999589849999788792563---2166776507899987
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE
Q ss_conf 79989999947991999968889510144066622356767757999995999989999567709999879876122233
Q 002564 434 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE 513 (907)
Q Consensus 434 ~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 513 (907)
+++ .+++++.|+.+++|+...+........ .........+++++|++..++++ .++.+++|+ .++ ...+.
T Consensus 377 ~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~dg~~~~~~-~~~~v~~~~--~~~-~~~~~ 446 (611)
T 1nr0_A 377 SKG-DLFTVSWDDHLKVVPAGGSGVDSSKAV-----ANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYS--HGK-LTEVP 446 (611)
T ss_dssp TTS-CEEEEETTTEEEEECSSSSSSCTTSCC-----EEECSSCEEEEEECTTSSCEEEE-ESSEEEEEE--TTE-EEEEE
T ss_pred CCC-CEEEEECCCCEEEEECCCCCCCCCCEE-----EEECCCCCCEEEEECCCCEEEEE-ECCEEEEEE--CCC-EEEEE
T ss_conf 899-699998489668954688543565212-----00148997079980799699999-676399984--894-34640
Q ss_pred CCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCEE--EEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC-CC
Q ss_conf 186526999920798899993898399999236626--899605999700389878996999991898199997697-74
Q 002564 514 VGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM--VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL-AR 590 (907)
Q Consensus 514 ~~~~i~~i~~s~~~~~la~~~~dg~i~i~d~~~~~~--~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~-~~ 590 (907)
+...+.+++|+|+++++++++.|+.|++||+.++.. ... .+|...|++++|+|||++|++++.|++|++|++.+ ++
T Consensus 447 ~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~ 525 (611)
T 1nr0_A 447 ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE 525 (611)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE
T ss_pred CCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEC-CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCC
T ss_conf 68895499992899899996899739999945992224101-57788607999989999899994899899988577872
Q ss_pred EEEE--EE-ECCCEEEEEECCCCCEEEEEEECCCEEEEEECCC
Q ss_conf 1267--64-0872579997789763799873697499964454
Q 002564 591 QIDA--IH-VDVSITALSLSPNMDVLATAHVDQNGVYLWVNRC 630 (907)
Q Consensus 591 ~i~~--~~-~~~~v~~l~~spdg~~lat~~~d~~~i~iW~~~~ 630 (907)
++.. +. +...|.+++|+|||++||+++.|+ .|++|+...
T Consensus 526 ~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~-~v~lW~~~~ 567 (611)
T 1nr0_A 526 LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN-SVIVWNMNK 567 (611)
T ss_dssp ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTC
T ss_pred EEEEEEEEECCCCEEEEEECCCCCEEEEEECCC-CEEEEECCC
T ss_conf 232102640466425899899899799997997-299997887
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=485.55 Aligned_cols=520 Identities=21% Similarity=0.330 Sum_probs=438.8
Q ss_pred EECCCCCCCEEEEEEECCEEEEEECC---EEEEEEC-CEEEEEECCCCCCEEEEEE--ECCEEEEEECCCCEEEEECCCC
Q ss_conf 73377896608999956817999969---3999968-9058997056554589976--2998999955882999954888
Q 002564 50 LVGPQLPKKIRALASYRDYTFAAYGN---HIAVVKR-AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGI 123 (907)
Q Consensus 50 ~~~~~~~~~I~~ia~~~~~~~~a~g~---~I~vw~~-~~~~~~~~~h~~~V~~l~~--~g~~l~s~~~dg~i~iWd~~~~ 123 (907)
....+|...|+|++|+||+.++|+++ .|++|+. ++.+.++.+|...|+++++ +|++|++++.|++|++||.. +
T Consensus 10 ~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~ 88 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-G 88 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-S
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECC-C
T ss_conf 398789985799999899899999938998999979997899996898998999998999999999698979999899-9
Q ss_pred CCCCCCEEEEECCCCCCCEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 76653212696289755289982899978999996688099996689919999928999879999969998999995699
Q 002564 124 EENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGSSISSCVSSPALDVVAVGCSDG 203 (907)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp~~~~la~g~~dg 203 (907)
+. +..+..+...+..++|+|++ +++++++.|+.+++|+. .........++...+.++.++|++..++.++.++
T Consensus 89 ~~----~~~~~~~~~~v~~~~~s~d~--~~l~~~~~d~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 161 (577)
T 2ymu_A 89 QL----LQTLTGHSSSVRGVAFSPDG--QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 161 (577)
T ss_dssp CE----EEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEET-TCCEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred CE----EEEEECCCCCEEEEEECCCC--CEEEEECCCCCEEECCC-CCCEEEECCCCCCCEEEEEEECCCCCCEECCCCC
T ss_conf 78----99997899988999998999--98999807983352023-5520011047777435554203776320025553
Q ss_pred EEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEE
Q ss_conf 49999910891489994069977899998019999799994998499998898602123412434683899995599999
Q 002564 204 KIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVL 283 (907)
Q Consensus 204 ~I~iwd~~~~~~~~~~~~~~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 283 (907)
.+++|+.. ......... +...+.++.|+|++. ++++++.|+.|++||. +++....+. +|...|.+++|+|++..+
T Consensus 162 ~~~~~~~~-~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~d~~v~~w~~-~~~~~~~~~-~~~~~v~~~~~s~dg~~l 236 (577)
T 2ymu_A 162 TVKLWNRN-GQLLQTLTG-HSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTI 236 (577)
T ss_dssp EEEEECTT-SCEEEEEEC-CSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEEEE-CCSSCEEEEEECTTSSCE
T ss_pred CEECCCCC-EEEEEECCC-CCCCEEEEEECCCCC-EEEEECCCCEEEEEEC-CCCEEEEEE-CCCCCEEEEEECCCCCEE
T ss_conf 10000000-000000268-776356654169977-8999859998999949-996899994-688988999997999999
Q ss_pred EEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECEECCCCEEECHHHHHHHHHH
Q ss_conf 99839996799990379998612474148899996899934998999994899779998020243214202456698851
Q 002564 284 MSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARK 363 (907)
Q Consensus 284 ~s~~~d~~i~iw~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 363 (907)
++++.|+.+++|+.+. +.+..+.+|...+.+++|+|++..+++++.|+.+++|+... +....+..
T Consensus 237 ~~~~~d~~i~~w~~~~-----~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~~~~~~~~--------- 301 (577)
T 2ymu_A 237 ASASDDKTVKLWNRNG-----QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QLLQTLTG--------- 301 (577)
T ss_dssp EEEETTSCEEEECTTS-----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECC---------
T ss_pred EEEECCCEEEEEECCC-----CEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC-CEEEEEEC---------
T ss_conf 9991899899995999-----79999806889879999968999999995999799994899-58999706---------
Q ss_pred CCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECEECCEEEECCCCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 02002210468334864022113454302898609960999990101104243205999998649999967998999994
Q 002564 364 LKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGT 443 (907)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 443 (907)
...++..+.+++ +.. .+.....++.+++|+...... .....+...+.+++++|+|+++++|+
T Consensus 302 --------h~~~v~~~~~~~----~~~-~l~t~~~d~~i~~w~~~~~~~-----~~~~~~~~~v~~~~~s~~g~~l~~~~ 363 (577)
T 2ymu_A 302 --------HSSSVWGVAFSP----DGQ-TIASASDDKTVKLWNRNGQHL-----QTLTGHSSSVWGVAFSPDGQTIASAS 363 (577)
T ss_dssp --------CSSCEEEEEECT----TSS-EEEEEETTSCEEEEETTSCEE-----EEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred --------CCCCEEEEEECC----CCC-EEEEEECCCEEEEEECCCCEE-----EEEECCCCCEEEEEECCCCCEEEEEE
T ss_conf --------889769999999----999-999996999599996999725-----78747889779999989999999996
Q ss_pred CCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE-CCCCEEEEE
Q ss_conf 7991999968889510144066622356767757999995999989999567709999879876122233-186526999
Q 002564 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWE-VGCSLVKIV 522 (907)
Q Consensus 444 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~i~~i~ 522 (907)
.+|.+++|+.. +.....+. +|...|.+++|+|+++++++++.|+.|++|+.. ++....+. +...+.+++
T Consensus 364 ~dg~v~~~~~~-~~~~~~~~--------~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~ 433 (577)
T 2ymu_A 364 DDKTVKLWNRN-GQLLQTLT--------GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVA 433 (577)
T ss_dssp TTSEEEEEETT-CCEEEEEE--------CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEE
T ss_pred CCCEEEEECCC-CCEEEEEC--------CCCCCEEEEEECCCCCEEEEEECCCEEEEEECC-CCEEEEECCCCCCEEEEE
T ss_conf 99989999089-97899852--------788974899998999999999499989999699-978989628899757999
Q ss_pred EEECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEECC-CE
Q ss_conf 92079889999389839999923662689960599970038987899699999189819999769774126764087-25
Q 002564 523 YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SI 601 (907)
Q Consensus 523 ~s~~~~~la~~~~dg~i~i~d~~~~~~~~~~~~h~~~I~~i~fspdg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v 601 (907)
|+|+++++++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|+.|++||. +++++..+..|. +|
T Consensus 434 ~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v 511 (577)
T 2ymu_A 434 FSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 511 (577)
T ss_dssp ECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCE
T ss_pred ECCCCCEEEEECCCCEEEEEEC-CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEECC-CCCEEEEEECCCCCE
T ss_conf 9899999999939998999979-99889997278997789999699999999919897999939-997899986799998
Q ss_pred EEEEECCCCCEEEEEEECCCEEEEEEC
Q ss_conf 799977897637998736974999644
Q 002564 602 TALSLSPNMDVLATAHVDQNGVYLWVN 628 (907)
Q Consensus 602 ~~l~~spdg~~lat~~~d~~~i~iW~~ 628 (907)
++++|+|+|++|++++.|+ .|++|+.
T Consensus 512 ~~l~~s~dg~~l~s~~~dg-~v~lwd~ 537 (577)
T 2ymu_A 512 RGVAFSPDGQTIASASDDK-TVKLWNR 537 (577)
T ss_dssp EEEEECTTSSCEEEEETTS-EEEEECT
T ss_pred EEEEECCCCCEEEEEECCC-EEEEEEC
T ss_conf 9999918999999998969-9999969
No 7
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=477.15 Aligned_cols=535 Identities=14% Similarity=0.139 Sum_probs=459.3
Q ss_pred ECCCEEEEEEEECCEEEEEECCCC----EEEEECCCCCCC-EEEEEEEC--CEEEEEECC---EEEEEECC---------
Q ss_conf 709819999980995999975965----578733778966-08999956--817999969---39999689---------
Q 002564 23 RLGTENFVTVSVGKAFHIYNCAKL----NLVLVGPQLPKK-IRALASYR--DYTFAAYGN---HIAVVKRA--------- 83 (907)
Q Consensus 23 ~~~~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~-I~~ia~~~--~~~~~a~g~---~I~vw~~~--------- 83 (907)
.++++.+++++ ++.+++||..++ +......+|... |++++|+| ++.++++++ .|++|+..
T Consensus 27 spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~ 105 (615)
T 1pgu_A 27 DPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE 105 (615)
T ss_dssp ETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEE
T ss_pred CCCCCEEEEEC-CCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCEEEEECCCCEEEEEECCCCCCCCCCC
T ss_conf 89999799935-98499997778877651431880578844999997967899889996489879997688876554455
Q ss_pred -EEEEEECCCCCCEEEEEE--ECCEEEEEECC----CCEEEEECCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCEEEE
Q ss_conf -058997056554589976--29989999558----82999954888766532126962897552899828999789999
Q 002564 84 -HQVATWSRHSAKVNLLLL--FGEHILSIDID----GNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIV 156 (907)
Q Consensus 84 -~~~~~~~~h~~~V~~l~~--~g~~l~s~~~d----g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~ 156 (907)
+.+..+.+|...|.++++ ++++|++++.+ +.|.+|| .++. ...+..+...+..+.|+|++. ..+++
T Consensus 106 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~----~~~~~~~~~~v~~~~~~~~~~-~~l~~ 178 (615)
T 1pgu_A 106 VNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNS----LGEVSGHSQRINACHLKQSRP-MRSMT 178 (615)
T ss_dssp EEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCE----EEECCSCSSCEEEEEECSSSS-CEEEE
T ss_pred CCCCCHHHCCCCCEEEEEEECCCCEEEEECCCCCCCCEEEEEE--CCCC----CEEEECCCCCEEEEEECCCCC-CEEEE
T ss_conf 4200011125663799999079998999316877755799997--8981----031306774388999887899-68999
Q ss_pred EECCCCEEEEECCCCEEEEEECCCCC---CEEEEEECCC-CCEEEEEECCCEEEEEECCCCCEEEEEEE---CCCCCEEE
Q ss_conf 96688099996689919999928999---8799999699-98999995699499999108914899940---69977899
Q 002564 157 GSQEGSLQLWNISTKKKLYEFKGWGS---SISSCVSSPA-LDVVAVGCSDGKIHVHNVRYDEELVTFTH---SMRGAVTA 229 (907)
Q Consensus 157 gs~dg~i~iwd~~~~~~~~~~~~h~~---~I~~l~~sp~-~~~la~g~~dg~I~iwd~~~~~~~~~~~~---~~~~~v~~ 229 (907)
++.|+.|++||..+++.+..+.+|.. .|++++|+|+ ++++++++.||.|++||+.+++.+..+.. .|...|.+
T Consensus 179 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~ 258 (615)
T 1pgu_A 179 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 258 (615)
T ss_dssp EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred EECCCCEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCEEE
T ss_conf 95799599996999610132025677774289999789778889998689808999899997858952544456775589
Q ss_pred EEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCC----CCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCC
Q ss_conf 99801999979999499849999889860212341243----46838999955999999983999679999037999861
Q 002564 230 LAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAH----DNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR 305 (907)
Q Consensus 230 l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~ 305 (907)
++|+ ++. ++++++.|+.|++||+.+++....+. .+ ...+.++.|. ++..+++++.|+.+++|++... .
T Consensus 259 ~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~----~ 330 (615)
T 1pgu_A 259 LSWL-DSQ-KFATVGADATIRVWDVTTSKCVQKWT-LDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHD----E 330 (615)
T ss_dssp EEES-SSS-EEEEEETTSEEEEEETTTTEEEEEEE-CCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEE----E
T ss_pred EEEC-CCC-EEEEECCCCCEEEEECCCCCEEEEEC-CCCCCCCCCEEEEEEC-CCCEEEEEECCCCEEEEECCCC----C
T ss_conf 9981-899-79998489948999788892787884-7877545714699918-9976999978997899988899----2
Q ss_pred EEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECEECCCCEEECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCC
Q ss_conf 24741488999968999349989999948997799980202432142024566988510200221046833486402211
Q 002564 306 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIR 385 (907)
Q Consensus 306 ~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 385 (907)
.+..+.+|...+.+++| |+ +++++.||.+++|++.. .. .....++..+...
T Consensus 331 ~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~~---~~-------------------~~~~~~v~~~~~~--- 381 (615)
T 1pgu_A 331 VLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSSS---MH-------------------QDHSNLIVSLDNS--- 381 (615)
T ss_dssp EEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTTE---EE-------------------CCCCSCEEEEECC---
T ss_pred EEEEEECCCCCEEEEEE-CC---CEEECCCCEEEEEECHH---HC-------------------CCCCCCEEEEEEC---
T ss_conf 88999477787899995-67---48987999599987524---15-------------------7556851799978---
Q ss_pred CCCCCCEEEEEECCCEEEEEEEEECEECCEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECC
Q ss_conf 34543028986099609999901011042432059999986499999679989999947991999968889510144066
Q 002564 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDM 465 (907)
Q Consensus 386 ~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~ 465 (907)
+ ...+.....++.+++|+....... ..+.+++++|++.+++++ .++.+.+|+...+.....+
T Consensus 382 --~-~~~l~~~~~d~~i~~~~~~~~~~~-----------~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--- 443 (615)
T 1pgu_A 382 --K-AQEYSSISWDDTLKVNGITKHEFG-----------SQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSV--- 443 (615)
T ss_dssp --S-TTCCEEEETTTEEEETTEEEEECS-----------SCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEE---
T ss_pred --C-CCEEEEEECCCCEEEEECCCCCCC-----------CCCEEEEECCCCCEEEEE-CCCCEEEEECCCCCEEEEC---
T ss_conf --9-867999958997999886667636-----------784699982898789996-7982699944678665551---
Q ss_pred CCCCCCCCCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCCCCEE-EEE-ECCCCEEEEEEEECCCEEEEEECCCEEEEE
Q ss_conf 62235676775799999599998999956-770999987987612-223-318652699992079889999389839999
Q 002564 466 SERSNYAHNGEVVGVACDSTNTLMISAGY-HGDIKVWDFKGRDLK-SRW-EVGCSLVKIVYHRVNGLLATVADDLVIRLF 542 (907)
Q Consensus 466 ~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~-~~~-~~~~~i~~i~~s~~~~~la~~~~dg~i~i~ 542 (907)
.+...+.+++++ ++++++++. |+.+++|++.+++.. ..+ .+...+.+++|+|+++++++++.|+.|++|
T Consensus 444 ------~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw 515 (615)
T 1pgu_A 444 ------RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLY 515 (615)
T ss_dssp ------ECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ------CCCCCCEEEEEC--CCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEE
T ss_conf ------567872077883--888999656898699998888543533367765750799998999989981799859986
Q ss_pred ECCCCEEEEEEEC-CCCCEEEEEECC----------CCCEEEEEECCCCEEEEECCCC-CEEEEEEECC-CEEEEEECCC
Q ss_conf 9236626899605-999700389878----------9969999918981999976977-4126764087-2579997789
Q 002564 543 DVVALRMVRKFEG-HTDRITDFCFSE----------DGKWLLSSGMDGSLRIWDVILA-RQIDAIHVDV-SITALSLSPN 609 (907)
Q Consensus 543 d~~~~~~~~~~~~-h~~~I~~i~fsp----------dg~~l~s~s~Dg~I~iwd~~~~-~~i~~~~~~~-~v~~l~~spd 609 (907)
|+.+++.+..+.+ |...|++++|+| ++++|++++.|+.|++||+.++ +++..+..|. .|++++|+|+
T Consensus 516 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~ 595 (615)
T 1pgu_A 516 DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP 595 (615)
T ss_dssp ETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEET
T ss_pred ECCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECHHHHCCCCCEEEEEECCC
T ss_conf 57777624676047887146999768323453324688889998179719999778885403113359430589997389
Q ss_pred CCEEEEEEECCCEEEEEECCC
Q ss_conf 763799873697499964454
Q 002564 610 MDVLATAHVDQNGVYLWVNRC 630 (907)
Q Consensus 610 g~~lat~~~d~~~i~iW~~~~ 630 (907)
+. |++++.|+ .|++|++..
T Consensus 596 ~~-l~s~~~d~-~v~iw~~~~ 614 (615)
T 1pgu_A 596 ST-LVSSGADA-CIKRWNVVL 614 (615)
T ss_dssp TE-EEEEETTS-CEEEEEEC-
T ss_pred CC-EEEECCCC-EEEEEEEEC
T ss_conf 97-28845996-399996015
No 8
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=449.28 Aligned_cols=512 Identities=13% Similarity=0.158 Sum_probs=432.8
Q ss_pred CCCCCCEEEEEEECCEEEEEE--CCEEEEEEC--C----EEEEEECCCCCC-EEEEEE----ECCEEEEEECCCCEEEEE
Q ss_conf 778966089999568179999--693999968--9----058997056554-589976----299899995588299995
Q 002564 53 PQLPKKIRALASYRDYTFAAY--GNHIAVVKR--A----HQVATWSRHSAK-VNLLLL----FGEHILSIDIDGNMFIWA 119 (907)
Q Consensus 53 ~~~~~~I~~ia~~~~~~~~a~--g~~I~vw~~--~----~~~~~~~~h~~~-V~~l~~----~g~~l~s~~~dg~i~iWd 119 (907)
..|.+.|++++|+|++.++++ ++.|.+|+. + +.+..+.+|... |.++++ ++++|++++.||.|++|+
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CCCCCCEEEEEECCCCCEEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCEEEEECCCCEEEEEE
T ss_conf 77658536899889999799935984999977788776514318805788449999979678998899964898799976
Q ss_pred CCCCCC----CCCCEEEEECCCCCCCEEEECCCCCCCEEEEEECC----CCEEEEECCCCEEEEEECCCCCCEEEEEECC
Q ss_conf 488876----65321269628975528998289997899999668----8099996689919999928999879999969
Q 002564 120 FKGIEE----NLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE----GSLQLWNISTKKKLYEFKGWGSSISSCVSSP 191 (907)
Q Consensus 120 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~gs~d----g~i~iwd~~~~~~~~~~~~h~~~I~~l~~sp 191 (907)
+.++.. .......+..+...+..+.|+|++ +++++++.+ +.|.+|| .++.+..+.+|...|.+++|+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~ 170 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG--RRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQ 170 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS--SEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECS
T ss_pred CCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCC--CEEEEECCCCCCCCEEEEEE--CCCCCEEEECCCCCEEEEEECC
T ss_conf 8887655445542000111256637999990799--98999316877755799997--8981031306774388999887
Q ss_pred CCC-EEEEEECCCEEEEEECCCCCEEEEEEECCCC---CEEEEEEECC-CCCEEEEEECCCCEEEEECCCCEEEEEEEC-
Q ss_conf 998-9999956994999991089148999406997---7899998019-999799994998499998898602123412-
Q 002564 192 ALD-VVAVGCSDGKIHVHNVRYDEELVTFTHSMRG---AVTALAFSSD-GQPLLASGASSGVISIWNLEKRRLQSVIRE- 265 (907)
Q Consensus 192 ~~~-~la~g~~dg~I~iwd~~~~~~~~~~~~~~~~---~v~~l~fs~d-g~~~l~sg~~dg~I~iwd~~~~~~~~~~~~- 265 (907)
+++ .+++++.|+.|++||+.+++.+..+..+ .. .|.+++|+|+ ++ ++++++.+|.|++||+.+++.+..+..
T Consensus 171 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 248 (615)
T 1pgu_A 171 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH-HKQGSFVRDVEFSPDSGE-FVITVGSDRKISCFDGKSGEFLKYIEDD 248 (615)
T ss_dssp SSSCEEEEEETTTEEEEEETTTBEEEEEECSS-SCTTCCEEEEEECSTTCC-EEEEEETTCCEEEEETTTCCEEEECCBT
T ss_pred CCCCEEEEEECCCCEEEEECCCCCEEEEECCC-CCCCCEEEEEEECCCCCC-EEEEEECCCEEEEEECCCCCEEEEECCC
T ss_conf 89968999957995999969996101320256-777742899997897788-8999868980899989999785895254
Q ss_pred --CCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCEEEECCCC----CCCCEEEEEECCCCEEEEEECCCCEE
Q ss_conf --434683899995599999998399967999903799986124741488----99996899934998999994899779
Q 002564 266 --AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGH----SAPPLCIRFYANGRHILSAGQDRAFR 339 (907)
Q Consensus 266 --~h~~~V~~l~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~h----~~~v~~i~~~~~g~~l~s~~~dg~i~ 339 (907)
.|...|.++.|+ ++.++++++.|+.+++|++... .....+..+ ...+.++.|. ++.++++++.|+.++
T Consensus 249 ~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~ 322 (615)
T 1pgu_A 249 QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS----KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLN 322 (615)
T ss_dssp TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT----EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEE
T ss_pred CCCCCCCEEEEEEC-CCCEEEEECCCCCEEEEECCCC----CEEEEECCCCCCCCCCEEEEEEC-CCCEEEEEECCCCEE
T ss_conf 44567755899981-8997999848994899978889----27878847877545714699918-997699997899789
Q ss_pred EEECEECCCCEEECHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECEECCEEEEC
Q ss_conf 99802024321420245669885102002210468334864022113454302898609960999990101104243205
Q 002564 340 LFSVIQDQQSRELSQRHVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRP 419 (907)
Q Consensus 340 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~ 419 (907)
+|++........+.. ...++..+.+ +. +.....++.+++|+.. .+.
T Consensus 323 ~~d~~~~~~~~~~~~-----------------~~~~v~~~~~-~~--------l~~~~~dg~i~~w~~~-------~~~- 368 (615)
T 1pgu_A 323 FYELGHDEVLKTISG-----------------HNKGITALTV-NP--------LISGSYDGRIMEWSSS-------SMH- 368 (615)
T ss_dssp EEETTEEEEEEEECC-----------------CSSCEEEEET-TT--------TEEEETTSCEEETTTT-------EEE-
T ss_pred EEECCCCCEEEEEEC-----------------CCCCEEEEEE-CC--------CEEECCCCEEEEEECH-------HHC-
T ss_conf 998889928899947-----------------7787899995-67--------4898799959998752-------415-
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 99999864999996799899999479919999688895101440666223567677579999959999899995677099
Q 002564 420 CPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIK 499 (907)
Q Consensus 420 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~ 499 (907)
..|...+.++++ ++++.+++++.+|.+++|++..+... ..+.+++++|++.+++++ .++.+.
T Consensus 369 -~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~---------------~~~~~~~~s~~~~~~~~~-~~~~~~ 430 (615)
T 1pgu_A 369 -QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFG---------------SQPKVASANNDGFTAVLT-NDDDLL 430 (615)
T ss_dssp -CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECS---------------SCEEEEEECSSSEEEEEE-TTSEEE
T ss_pred -CCCCCCEEEEEE-CCCCEEEEEECCCCEEEEECCCCCCC---------------CCCEEEEECCCCCEEEEE-CCCCEE
T ss_conf -755685179997-89867999958997999886667636---------------784699982898789996-798269
Q ss_pred EEECCCCCEEEEEECCCCEEEEEEEECCCEEEEEEC-CCEEEEEECCCCEEE-EEEECCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 998798761222331865269999207988999938-983999992366268-996059997003898789969999918
Q 002564 500 VWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVAD-DLVIRLFDVVALRMV-RKFEGHTDRITDFCFSEDGKWLLSSGM 577 (907)
Q Consensus 500 iwd~~~~~~~~~~~~~~~i~~i~~s~~~~~la~~~~-dg~i~i~d~~~~~~~-~~~~~h~~~I~~i~fspdg~~l~s~s~ 577 (907)
+|+...++....+.+...+.+++|+ +.++++++. |+.|++||+.+++.. ..+.+|...|++++|+|++++|++++.
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 508 (615)
T 1pgu_A 431 ILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV 508 (615)
T ss_dssp EEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEECCCCCEEEECCCCCCCEEEEEC--CCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCC
T ss_conf 9944678665551567872077883--88899965689869999888854353336776575079999899998998179
Q ss_pred CCCEEEEECCCCCEEEEEEE--CCCEEEEEECC----------CCCEEEEEEECCCEEEEEECCCC
Q ss_conf 98199997697741267640--87257999778----------97637998736974999644544
Q 002564 578 DGSLRIWDVILARQIDAIHV--DVSITALSLSP----------NMDVLATAHVDQNGVYLWVNRCM 631 (907)
Q Consensus 578 Dg~I~iwd~~~~~~i~~~~~--~~~v~~l~~sp----------dg~~lat~~~d~~~i~iW~~~~~ 631 (907)
|+.|++||+.+++++..+.. ...|++++|+| ++.+|++++.|+ .|++|+....
T Consensus 509 dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg-~i~iw~~~~~ 573 (615)
T 1pgu_A 509 MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT-NIFIYSVKRP 573 (615)
T ss_dssp TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS-CEEEEESSCT
T ss_pred CCEEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCC-CEEEEECCCC
T ss_conf 9859986577776246760478871469997683234533246888899981797-1999977888
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=448.33 Aligned_cols=565 Identities=12% Similarity=0.080 Sum_probs=350.2
Q ss_pred CCCCCEEEEEEECCEEEEEECC---EEEEEECCEEEEE-ECCCCCCEEEEEEE-CCEEEEEECCCCEEEEECCCCCCCCC
Q ss_conf 7896608999956817999969---3999968905899-70565545899762-99899995588299995488876653
Q 002564 54 QLPKKIRALASYRDYTFAAYGN---HIAVVKRAHQVAT-WSRHSAKVNLLLLF-GEHILSIDIDGNMFIWAFKGIEENLA 128 (907)
Q Consensus 54 ~~~~~I~~ia~~~~~~~~a~g~---~I~vw~~~~~~~~-~~~h~~~V~~l~~~-g~~l~s~~~dg~i~iWd~~~~~~~~~ 128 (907)
+|+..|++++|+|++.++|+|. .|++|+....... ...|...|.+++|. |++|++++.|++|++||+.+++.
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~--- 91 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKV--- 91 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSE---
T ss_pred CCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCE---
T ss_conf 88998489999799998999929798999968994799986899977999990898899998959599998999968---
Q ss_pred CEEEEECCCCCCCEEEECCCCCCCEEEEEECCCCEEEEECCCCEEE-----------EEECCCCCCEEEEEECCC-CCEE
Q ss_conf 2126962897552899828999789999966880999966899199-----------999289998799999699-9899
Q 002564 129 PVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKL-----------YEFKGWGSSISSCVSSPA-LDVV 196 (907)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~p~~~~~~l~~gs~dg~i~iwd~~~~~~~-----------~~~~~h~~~I~~l~~sp~-~~~l 196 (907)
+..+. +...+..+.|+|++ +++++|+.||.|++||+.++++. ..+.+|.+.|++++|+|+ +..+
T Consensus 92 -~~~~~-~~~~V~~v~~sp~g--~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l 167 (902)
T 2oaj_A 92 -LTTVF-VPGKITSIDTDASL--DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV 167 (902)
T ss_dssp -EEEEE-CSSCEEEEECCTTC--SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred -EEEEC-CCCCEEEEEECCCC--CEEEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEE
T ss_conf -99974-89987999987999--989999499929999999996265030432100025445789738999766999989
Q ss_pred EEEECCCEEEEEECCCCCEEEEEEEC-----------------CCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCEE
Q ss_conf 99956994999991089148999406-----------------9977899998019999799994998499998898602
Q 002564 197 AVGCSDGKIHVHNVRYDEELVTFTHS-----------------MRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRL 259 (907)
Q Consensus 197 a~g~~dg~I~iwd~~~~~~~~~~~~~-----------------~~~~v~~l~fs~dg~~~l~sg~~dg~I~iwd~~~~~~ 259 (907)
++|+.||.| +||+++++.+..+..+ |...|++++|+|+|. ++++++.||.|++||+.++++
T Consensus 168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETTTCCE
T ss_pred EEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCE
T ss_conf 999189849-998778965799833557767776544332345677768999859999-999998999399998789968
Q ss_pred EEE--EE--CC-------------CCCCEEEEEEEC----CC-CEEEEECCC-----CCEEEEECCCCCC----------
Q ss_conf 123--41--24-------------346838999955----99-999998399-----9679999037999----------
Q 002564 260 QSV--IR--EA-------------HDNAIISLHFFA----NE-PVLMSASAD-----NSIKMWIFDTTDG---------- 302 (907)
Q Consensus 260 ~~~--~~--~~-------------h~~~V~~l~~~~----~~-~~l~s~~~d-----~~i~iw~~~~~~~---------- 302 (907)
+.. +. .. |...|.+++|++ ++ .++++++.| +.+.+|++.....
T Consensus 246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~ 325 (902)
T 2oaj_A 246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMK 325 (902)
T ss_dssp EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHH
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHHH
T ss_conf 88885012345787776788885556774579997349998878999688777788852899954789875554255654
Q ss_pred ----CCCEEEECC-CCCCCCEEEEEEC----------CCCEEEEEECCCCEEEEECEECCCCEEECHHHHHHHHHHCCCH
Q ss_conf ----861247414-8899996899934----------9989999948997799980202432142024566988510200
Q 002564 303 ----DPRLLRFRS-GHSAPPLCIRFYA----------NGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARKLKMK 367 (907)
Q Consensus 303 ----~~~~~~~~~-~h~~~v~~i~~~~----------~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (907)
.+...+.+. ++...+..+.+.+ +...+++++.|+.+++|++.++...........
T Consensus 326 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~---------- 395 (902)
T 2oaj_A 326 NYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQ---------- 395 (902)
T ss_dssp HHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCG----------
T ss_pred HHHCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCC----------
T ss_conf 6641745227874189995479999778898867787850699991798489997899985565556898----------
Q ss_pred HHHCCCCCEEEEEECC------------------------------CCCCCCCCEEEEEECCCEEEEEEEEECEECC-EE
Q ss_conf 2210468334864022------------------------------1134543028986099609999901011042-43
Q 002564 368 EEELKLKPVIAFDCAE------------------------------IRERDWCNVVTCHMDTAQAYVWRLQNFVLGE-HI 416 (907)
Q Consensus 368 ~~~~~~~~i~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~-~~ 416 (907)
......+++..+.+.. ...++ ..+++.+..++.+++||........ ..
T Consensus 396 ~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd-g~~laSgs~DgtVrlWd~~~g~~~~~~~ 474 (902)
T 2oaj_A 396 NLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY-GTAFITGHSNGSVRIYDASHGDIQDNAS 474 (902)
T ss_dssp GGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE-EEEEEEEETTSEEEEEESSCCTTTTTBC
T ss_pred CCCCCCCCEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEEECCCCCEEEEECCCCCCCCCCE
T ss_conf 522358972489999749999988886046999754578577875333666-7589996589838999787764567736
Q ss_pred EE------CCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEE------------E----------------
Q ss_conf 20------5999998649999967998999994799199996888951014------------4----------------
Q 002564 417 LR------PCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGS------------Y---------------- 462 (907)
Q Consensus 417 ~~------~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~------------~---------------- 462 (907)
+. ...+|...+.+++|+|+|+++++|+.||+|++|++.+++.... +
T Consensus 475 ~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (902)
T 2oaj_A 475 FEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVR 554 (902)
T ss_dssp EEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECG
T ss_pred EEEECHHHCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 77501541377888764699963899969999458579999924865557545577866511345513467965432242
Q ss_pred ---------ECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEE-----E--ECCCCEEEEEEE--
Q ss_conf ---------0666223567677579999959999899995677099998798761222-----3--318652699992--
Q 002564 463 ---------LDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSR-----W--EVGCSLVKIVYH-- 524 (907)
Q Consensus 463 ---------~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~--~~~~~i~~i~~s-- 524 (907)
.........+|.+.|++++|+|+| +|++++.|++|++||+.+...+.. + .+...|++++|+
T Consensus 555 ~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~ 633 (902)
T 2oaj_A 555 DRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIM 633 (902)
T ss_dssp GGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEE
T ss_pred CCCCCCCCCCCCEEEEEECCCCCEEEEEECCCC-EEEEEECCCCEEEEECCCCEEEEEEEHHHHCCCCCCCEEEEEEEEE
T ss_conf 368988777601469998688867799964876-8999958976999988898399970246726466661399999998
Q ss_pred ---ECC---CEEEEEECCCEEEEEEC---CCCEEEEEEECCC-----CCEEEEE-EC----------------------C
Q ss_conf ---079---88999938983999992---3662689960599-----9700389-87----------------------8
Q 002564 525 ---RVN---GLLATVADDLVIRLFDV---VALRMVRKFEGHT-----DRITDFC-FS----------------------E 567 (907)
Q Consensus 525 ---~~~---~~la~~~~dg~i~i~d~---~~~~~~~~~~~h~-----~~I~~i~-fs----------------------p 567 (907)
||+ .+|++++.|++|++||+ .+++....+.+|. ++|..++ |+ +
T Consensus 634 ~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~ 713 (902)
T 2oaj_A 634 EYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCI 713 (902)
T ss_dssp ECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCC
T ss_pred ECCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCEECCCCCCEEEEEEEECCCCCCCCCCHHHHHCCCCCCCC
T ss_conf 41789876338999956873999999558998689996672440788964799858668797366887897255778877
Q ss_pred CCCEEEEEECCCCEEEEECCCCCEEEEEEECC-CEEEE---E------ECCCCCEEEEEEECCCEEEEEECCCCCCCCCC
Q ss_conf 99699999189819999769774126764087-25799---9------77897637998736974999644544456777
Q 002564 568 DGKWLLSSGMDGSLRIWDVILARQIDAIHVDV-SITAL---S------LSPNMDVLATAHVDQNGVYLWVNRCMFSGDSN 637 (907)
Q Consensus 568 dg~~l~s~s~Dg~I~iwd~~~~~~i~~~~~~~-~v~~l---~------~spdg~~lat~~~d~~~i~iW~~~~~~~~~~~ 637 (907)
++..|+++ +..||+|++.++++......+. .+.++ . +++++..|++...|+ .|++|++.
T Consensus 714 ~~~~l~~~--~~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g-~i~~~s~p-------- 782 (902)
T 2oaj_A 714 PGIVLITG--FDDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEING-HLRVFTIP-------- 782 (902)
T ss_dssp CEEEEEEC--SSEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTS-EEEEEETT--------
T ss_pred CEEEEEEE--CCCEEEEECCCCCCEEEECCCCEEEEEEEEEEECCCCCCCCCCEEEEEEECCC-CEEEEECC--------
T ss_conf 73999993--54059996753351236725620144777887013555446736999992799-59999785--------
Q ss_pred CCCCCCCCCCEEECCCCC
Q ss_conf 766789975126418986
Q 002564 638 IDSYASGKEIVSVKMPSV 655 (907)
Q Consensus 638 ~~~~~~~~~~~~~~~p~~ 655 (907)
..+++..+.+|..
T Consensus 783 -----~l~~~~~~~~~~~ 795 (902)
T 2oaj_A 783 -----DFKEQMSEHIPFP 795 (902)
T ss_dssp -----TCCEEEEEECSSC
T ss_pred -----CHHHHHHCCCCCC
T ss_conf -----6477841658860
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=446.06 Aligned_cols=601 Identities=12% Similarity=0.074 Sum_probs=426.6
Q ss_pred CCCCCEE--EEEECCCCCEEEEECCCEEEEEEEECCEEEEEECCCCEEEEECCCCCCCEEEEEEECCEEEEEEC---CEE
Q ss_conf 5544303--57613996205887098199999809959999759655787337789660899995681799996---939
Q 002564 3 IFEPYKA--IGYITSSVPFSVQRLGTENFVTVSVGKAFHIYNCAKLNLVLVGPQLPKKIRALASYRDYTFAAYG---NHI 77 (907)
Q Consensus 3 ~~~~~r~--~g~v~~~~~~~~~~~~~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~I~~ia~~~~~~~~a~g---~~I 77 (907)
+|.+... .|+ .+.+......+++.++++++.|++|++||..+....... .|...|++++|+| +.+++++ +.|
T Consensus 5 ~~~~~~~~~~gh-~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v 81 (902)
T 2oaj_A 5 IFSLAETNKYGM-SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTV 81 (902)
T ss_dssp TEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEE
T ss_pred EEEECCCCCCCC-CCCCEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEC-CCCCCEEEEEECC-CCEEEEEECCCEE
T ss_conf 220212021688-998489999799998999929798999968994799986-8999779999908-9889999895959
Q ss_pred EEEEC--CEEEEEECCCCCCEEEEEE--ECCEEEEEECCCCEEEEECCCCCCCCCCE-------EEEECCCCCCCEEEEC
Q ss_conf 99968--9058997056554589976--29989999558829999548887665321-------2696289755289982
Q 002564 78 AVVKR--AHQVATWSRHSAKVNLLLL--FGEHILSIDIDGNMFIWAFKGIEENLAPV-------GHVKLDDKFTPTCIMH 146 (907)
Q Consensus 78 ~vw~~--~~~~~~~~~h~~~V~~l~~--~g~~l~s~~~dg~i~iWd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 146 (907)
++|+. ++.+..+. |...|+++++ ++++|++++.||.|++||+.++......+ .....|...+..++|+
T Consensus 82 ~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~s 160 (902)
T 2oaj_A 82 YVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWN 160 (902)
T ss_dssp EEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred EEEECCCCCEEEEEC-CCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 999899996899974-8998799998799998999949992999999999626503043210002544578973899976
Q ss_pred CCCCCCEEEEEECCCCEEEEECCCCEEEEEECCC------------------CCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 8999789999966880999966899199999289------------------9987999996999899999569949999
Q 002564 147 PDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGW------------------GSSISSCVSSPALDVVAVGCSDGKIHVH 208 (907)
Q Consensus 147 p~~~~~~l~~gs~dg~i~iwd~~~~~~~~~~~~h------------------~~~I~~l~~sp~~~~la~g~~dg~I~iw 208 (907)
|++. +.+++|+.||.| +||+++++++..+..| ...|++++|+|++++|++|+.||.|++|
T Consensus 161 p~~~-~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lW 238 (902)
T 2oaj_A 161 PRDI-GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW 238 (902)
T ss_dssp TTEE-EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred CCCC-CEEEEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEE
T ss_conf 6999-989999189849-99877896579983355776777654433234567776899985999999999899939999
Q ss_pred ECCCCCEEEEEEE-----C------------CCCCEEEEEEEC----CCCCEEEEEECC-----CCEEEEECC-------
Q ss_conf 9108914899940-----6------------997789999801----999979999499-----849999889-------
Q 002564 209 NVRYDEELVTFTH-----S------------MRGAVTALAFSS----DGQPLLASGASS-----GVISIWNLE------- 255 (907)
Q Consensus 209 d~~~~~~~~~~~~-----~------------~~~~v~~l~fs~----dg~~~l~sg~~d-----g~I~iwd~~------- 255 (907)
|+++++.+..... + +..+|++++|++ ++..++++|+.+ +.+.+|++.
T Consensus 239 d~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~ 318 (902)
T 2oaj_A 239 DANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSI 318 (902)
T ss_dssp ETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGG
T ss_pred ECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 87899688888501234578777678888555677457999734999887899968877778885289995478987555
Q ss_pred -----------CCEEEEEEECCCCCCEEEEEEEC----------CCCEEEEECCCCCEEEEECCCCCCCCC---------
Q ss_conf -----------86021234124346838999955----------999999983999679999037999861---------
Q 002564 256 -----------KRRLQSVIREAHDNAIISLHFFA----------NEPVLMSASADNSIKMWIFDTTDGDPR--------- 305 (907)
Q Consensus 256 -----------~~~~~~~~~~~h~~~V~~l~~~~----------~~~~l~s~~~d~~i~iw~~~~~~~~~~--------- 305 (907)
+.+....+...+...|..+.+.+ +...+++++.|+.+++|++..+.....
T Consensus 319 ~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~ 398 (902)
T 2oaj_A 319 TSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLS 398 (902)
T ss_dssp CCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGT
T ss_pred CCHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 42556546641745227874189995479999778898867787850699991798489997899985565556898522
Q ss_pred ----------------------------EEEECCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECEECCCCE--EECHH
Q ss_conf ----------------------------247414889999689993499899999489977999802024321--42024
Q 002564 306 ----------------------------LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSR--ELSQR 355 (907)
Q Consensus 306 ----------------------------~~~~~~~h~~~v~~i~~~~~g~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~ 355 (907)
....+.+|...+.+++|+|+++.+++++.|++|++||+..+.... .+...
T Consensus 399 ~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~ 478 (902)
T 2oaj_A 399 WLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVN 478 (902)
T ss_dssp TBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEE
T ss_pred CCCCCEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEE
T ss_conf 35897248999974999998888604699975457857787533366675899965898389997877645677367750
Q ss_pred HHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEEEECEEC----------------------
Q ss_conf 5669885102002210468334864022113454302898609960999990101104----------------------
Q 002564 356 HVAKRARKLKMKEEELKLKPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLG---------------------- 413 (907)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~---------------------- 413 (907)
.. + .+ ....-..+.++++++ +. ..++.+..++.+++|++......
T Consensus 479 -l~-~--~~----~~~h~~~V~svafsp----dg-~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (902)
T 2oaj_A 479 -LS-R--TL----NKAKELAVDKISFAA----ET-LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNN 545 (902)
T ss_dssp -HH-H--HT----TCSSSCCEEEEEEET----TT-TEEEEEETTSCEEEEEEEECCC---------------CCSCCGGG
T ss_pred -CH-H--HC----CCCCCCCEEEEEECC----CC-CEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCC
T ss_conf -15-4--13----778887646999638----99-969999458579999924865557545577866511345513467
Q ss_pred -------------------CEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCC-CC
Q ss_conf -------------------2432059999986499999679989999947991999968889510144066622356-76
Q 002564 414 -------------------EHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY-AH 473 (907)
Q Consensus 414 -------------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~h 473 (907)
...+....+|...|++++|+|+| ++++|+.||.|++||+.++........ .... +|
T Consensus 546 ~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~---~~~~~gh 621 (902)
T 2oaj_A 546 TNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENI---REISGAQ 621 (902)
T ss_dssp SSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEG---GGTCSSC
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCC-EEEEEECCCCEEEEECCCCEEEEEEEH---HHHCCCC
T ss_conf 965432242368988777601469998688867799964876-899995897699998889839997024---6726466
Q ss_pred CCCEEEEEEC-----CCC---CEEEEEECCCEEEEEEC---CCCCEEEEEECC------CCEEEEE-EE-----------
Q ss_conf 7757999995-----999---98999956770999987---987612223318------6526999-92-----------
Q 002564 474 NGEVVGVACD-----STN---TLMISAGYHGDIKVWDF---KGRDLKSRWEVG------CSLVKIV-YH----------- 524 (907)
Q Consensus 474 ~~~v~~i~~~-----~~~---~~l~s~~~dg~i~iwd~---~~~~~~~~~~~~------~~i~~i~-~s----------- 524 (907)
...|++++|+ ||+ ++|++++.|++|++|++ .+++....+..+ .+|..+. |+
T Consensus 622 ~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~ 701 (902)
T 2oaj_A 622 SACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATI 701 (902)
T ss_dssp CCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBH
T ss_pred CCCEEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCEECCCCCCEEEEEEEECCCCCCCCCCH
T ss_conf 66139999999841789876338999956873999999558998689996672440788964799858668797366887
Q ss_pred -----------ECCCEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEE---E------ECCCCCEEEEEECCCCEEEE
Q ss_conf -----------079889999389839999923662689960599970038---9------87899699999189819999
Q 002564 525 -----------RVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF---C------FSEDGKWLLSSGMDGSLRIW 584 (907)
Q Consensus 525 -----------~~~~~la~~~~dg~i~i~d~~~~~~~~~~~~h~~~I~~i---~------fspdg~~l~s~s~Dg~I~iw 584 (907)
+++.+++++ +..|++|++.++++.++..+|...+..+ . |++++..|++.+.||+|++|
T Consensus 702 ~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~ 779 (902)
T 2oaj_A 702 PKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVF 779 (902)
T ss_dssp HHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEE
T ss_pred HHHHCCCCCCCCCEEEEEEE--CCCEEEEECCCCCCEEEECCCCEEEEEEEEEEECCCCCCCCCCEEEEEEECCCCEEEE
T ss_conf 89725577887773999993--5405999675335123672562014477788701355544673699999279959999
Q ss_pred ECCCCCEEEEEEECCC-----EEEEEECCCCCEEEEEEECCC-EEEEEEC
Q ss_conf 7697741267640872-----579997789763799873697-4999644
Q 002564 585 DVILARQIDAIHVDVS-----ITALSLSPNMDVLATAHVDQN-GVYLWVN 628 (907)
Q Consensus 585 d~~~~~~i~~~~~~~~-----v~~l~~spdg~~lat~~~d~~-~i~iW~~ 628 (907)
++++++++..++.... +...+|+++|+.+...+.... -+.+|..
T Consensus 780 s~p~l~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~e~~~~~~~~~ 829 (902)
T 2oaj_A 780 TIPDFKEQMSEHIPFPIAAKYITESSVLRNGDIAIRVSEFQASLFSTVKE 829 (902)
T ss_dssp ETTTCCEEEEEECSSCCCHHHHTTCEECTTSCEEEECSSSEEEEEEEESC
T ss_pred ECCCHHHHHHCCCCCCCCCCCCCCEEECCCCCEEEEECHHHEEEEEEECC
T ss_conf 78564778416588602446432028968988999827026489999747
Done!