Your job contains 1 sequence.
>002565
MAAISPIDISSSDSDLDIGESDTSETRQSGNVRILPPWATKAAVNARTGYGGQSQKVPSF
ERSYASNGSSSNANSYSQEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRI
ANVASADYEKISSQQALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPS
TVNSKGYIRDYYVKKNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADER
AVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGI
LADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETG
ESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHG
GSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKK
ISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAK
RRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRA
IMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVN
QNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAI
CCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCV
SDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGS
SAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT
DREVCSL
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002565
(907 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2008096 - symbol:AT1G50410 species:3702 "Arabi... 2219 5.3e-230 1
TAIR|locus:2095360 - symbol:AT3G20010 species:3702 "Arabi... 1698 8.6e-219 2
TAIR|locus:2008470 - symbol:EDA16 "embryo sac development... 1579 5.1e-164 2
TAIR|locus:2089318 - symbol:AT3G16600 species:3702 "Arabi... 405 1.0e-121 4
POMBASE|SPBC23E6.02 - symbol:rrp2 "ATP-dependent DNA heli... 540 9.3e-68 3
ASPGD|ASPL0000030172 - symbol:AN5483 species:162425 "Emer... 467 7.4e-66 4
TAIR|locus:2162504 - symbol:RAD5 species:3702 "Arabidopsi... 414 1.7e-61 5
ZFIN|ZDB-GENE-030131-3306 - symbol:hltf "helicase-like tr... 434 2.3e-60 5
POMBASE|SPAC17A2.12 - symbol:rrp1 "ATP-dependent DNA heli... 412 4.2e-60 5
TAIR|locus:2158357 - symbol:AT5G43530 species:3702 "Arabi... 430 1.3e-59 5
MGI|MGI:1196437 - symbol:Hltf "helicase-like transcriptio... 441 5.5e-58 5
UNIPROTKB|I3LM88 - symbol:HLTF "Uncharacterized protein" ... 432 1.1e-57 5
UNIPROTKB|F1MLM2 - symbol:HLTF "Uncharacterized protein" ... 429 1.3e-57 5
UNIPROTKB|E2R9I5 - symbol:HLTF "Uncharacterized protein" ... 430 1.9e-57 5
UNIPROTKB|Q14527 - symbol:HLTF "Helicase-like transcripti... 427 2.4e-56 5
DICTYBASE|DDB_G0272082 - symbol:DDB_G0272082 "CHR group p... 373 1.5e-55 6
CGD|CAL0000717 - symbol:orf19.5675 species:5476 "Candida ... 341 3.8e-55 6
RGD|1309031 - symbol:Hltf "helicase-like transcription fa... 411 5.8e-55 5
SGD|S000005717 - symbol:ULS1 "Protein involved in proteol... 406 8.3e-54 3
UNIPROTKB|E1C366 - symbol:TTF2 "Uncharacterized protein" ... 293 3.5e-52 6
UNIPROTKB|E1C1L9 - symbol:TTF2 "Uncharacterized protein" ... 293 4.0e-52 6
SGD|S000000318 - symbol:RAD16 "Protein that binds damaged... 188 6.6e-52 6
TAIR|locus:2207175 - symbol:AT1G05120 species:3702 "Arabi... 216 3.1e-50 5
ZFIN|ZDB-GENE-110411-73 - symbol:si:ch1073-303l5.1 "si:ch... 285 3.2e-50 5
POMBASE|SPAC13G6.01c - symbol:rad8 "ubiquitin-protein lig... 369 1.4e-49 7
POMBASE|SPBC582.10c - symbol:SPBC582.10c "ATP-dependent D... 347 3.6e-49 5
ASPGD|ASPL0000049992 - symbol:AN2256 species:162425 "Emer... 332 1.4e-48 5
POMBASE|SPCC330.01c - symbol:rhp16 "Rad16 homolog Rhp16" ... 178 2.6e-46 6
CGD|CAL0006085 - symbol:RAD16 species:5476 "Candida albic... 192 5.0e-46 5
WB|WBGene00010061 - symbol:F54E12.2 species:6239 "Caenorh... 240 1.5e-45 6
GENEDB_PFALCIPARUM|MAL13P1.216 - symbol:MAL13P1.216 "DNA ... 417 1.6e-45 4
GENEDB_PFALCIPARUM|PFL2440w - symbol:PFL2440w "DNA repair... 200 2.6e-45 5
UNIPROTKB|Q8I4S6 - symbol:PFL2440w "DNA repair protein rh... 200 2.6e-45 5
UNIPROTKB|F1N2E8 - symbol:TTF2 "Uncharacterized protein" ... 250 3.1e-45 6
MGI|MGI:1921294 - symbol:Ttf2 "transcription termination ... 253 6.6e-45 5
UNIPROTKB|H7C5K0 - symbol:HLTF "Helicase-like transcripti... 424 7.8e-45 2
FB|FBgn0002542 - symbol:lds "lodestar" species:7227 "Dros... 240 2.2e-44 5
UNIPROTKB|I3L7V5 - symbol:TTF2 "Uncharacterized protein" ... 259 6.3e-44 5
UNIPROTKB|F1SAY2 - symbol:TTF2 "Uncharacterized protein" ... 259 7.2e-44 5
WB|WBGene00020742 - symbol:T23H2.3 species:6239 "Caenorha... 225 1.7e-43 5
ASPGD|ASPL0000056426 - symbol:AN0044 species:162425 "Emer... 370 4.5e-43 4
UNIPROTKB|Q9UNY4 - symbol:TTF2 "Transcription termination... 243 8.2e-43 5
UNIPROTKB|E2RGF7 - symbol:TTF2 "Uncharacterized protein" ... 247 1.4e-42 6
ASPGD|ASPL0000065871 - symbol:AN7538 species:162425 "Emer... 291 3.7e-41 4
UNIPROTKB|D4A1K7 - symbol:Ttf2 "Protein Ttf2" species:101... 255 5.7e-40 4
TAIR|locus:2196115 - symbol:AT1G02670 species:3702 "Arabi... 256 1.9e-39 4
FB|FBgn0037531 - symbol:CG10445 species:7227 "Drosophila ... 220 4.7e-39 5
DICTYBASE|DDB_G0282115 - symbol:DDB_G0282115 "CHR group p... 255 6.2e-38 6
ASPGD|ASPL0000008250 - symbol:AN10794 species:162425 "Eme... 326 8.1e-38 3
SGD|S000004022 - symbol:RAD5 "DNA helicase" species:4932 ... 315 1.0e-37 5
UNIPROTKB|G4MPA7 - symbol:MGG_07014 "DNA repair protein R... 175 1.4e-37 6
CGD|CAL0004569 - symbol:orf19.2097 species:5476 "Candida ... 297 1.4e-34 6
UNIPROTKB|G4NIT2 - symbol:MGG_12155 "Uncharacterized prot... 297 1.9e-34 5
DICTYBASE|DDB_G0287171 - symbol:DDB_G0287171 "CHR group p... 184 1.2e-27 6
UNIPROTKB|E1C5L6 - symbol:SHPRH "Uncharacterized protein"... 240 3.9e-26 6
UNIPROTKB|E1C615 - symbol:SHPRH "Uncharacterized protein"... 240 3.9e-26 6
MGI|MGI:1917581 - symbol:Shprh "SNF2 histone linker PHD R... 228 6.0e-26 6
UNIPROTKB|E1BLB1 - symbol:SHPRH "Uncharacterized protein"... 225 6.8e-25 6
UNIPROTKB|E2R8G0 - symbol:SHPRH "Uncharacterized protein"... 223 6.9e-25 6
DICTYBASE|DDB_G0281949 - symbol:helE "CHR group protein" ... 287 8.0e-25 5
RGD|1310342 - symbol:Shprh "SNF2 histone linker PHD RING ... 226 8.8e-25 6
UNIPROTKB|Q47YP1 - symbol:CPS_3404 "Snf2 family protein" ... 208 1.0e-24 4
TIGR_CMR|CPS_3404 - symbol:CPS_3404 "Snf2 family protein"... 208 1.0e-24 4
UNIPROTKB|Q149N8 - symbol:SHPRH "E3 ubiquitin-protein lig... 220 2.3e-24 6
UNIPROTKB|K4DI94 - symbol:SHPRH "SNF2 histone linker PHD ... 220 2.3e-24 6
UNIPROTKB|F1S736 - symbol:SHPRH "Uncharacterized protein"... 220 4.7e-24 6
TAIR|locus:2064786 - symbol:AT2G40770 species:3702 "Arabi... 232 6.6e-24 6
UNIPROTKB|Q8EGF3 - symbol:SO_1651 "Helicase/SNF2 family d... 185 1.0e-23 4
TIGR_CMR|SO_1651 - symbol:SO_1651 "Snf2 family protein" s... 185 1.0e-23 4
UNIPROTKB|O53499 - symbol:helZ "PROBABLE HELICASE HELZ" s... 225 7.3e-23 3
DICTYBASE|DDB_G0267638 - symbol:DDB_G0267638 "CHR group p... 181 1.1e-22 5
ASPGD|ASPL0000031617 - symbol:AN10707 species:162425 "Eme... 159 8.2e-22 4
POMBASE|SPBC1826.01c - symbol:mot1 "TATA-binding protein ... 173 9.0e-22 4
WB|WBGene00007027 - symbol:ssl-1 species:6239 "Caenorhabd... 185 1.2e-21 4
TIGR_CMR|BA_1804 - symbol:BA_1804 "helicase, putative" sp... 162 8.8e-21 4
DICTYBASE|DDB_G0292948 - symbol:isw "CHR group protein" s... 183 8.8e-21 5
SGD|S000006003 - symbol:MOT1 "Essential protein involved ... 175 1.9e-20 4
TAIR|locus:2173644 - symbol:CHR1 "chromatin remodeling 1"... 152 5.1e-20 4
ZFIN|ZDB-GENE-050419-256 - symbol:chd2 "chromodomain heli... 205 1.2e-19 4
TIGR_CMR|BA_5487 - symbol:BA_5487 "helicase, putative" sp... 225 1.9e-19 3
ZFIN|ZDB-GENE-070705-296 - symbol:si:dkey-148b12.1 "si:dk... 177 3.2e-19 4
RGD|1565642 - symbol:Srcap "Snf2-related CREBBP activator... 181 3.4e-19 4
UNIPROTKB|H0YJG4 - symbol:CHD8 "Chromodomain-helicase-DNA... 203 4.3e-19 4
TAIR|locus:2062999 - symbol:BRM "AT2G46020" species:3702 ... 136 5.0e-19 6
WB|WBGene00002169 - symbol:isw-1 species:6239 "Caenorhabd... 177 5.7e-19 4
GENEDB_PFALCIPARUM|PF11_0053 - symbol:PF11_0053 "PfSNF2L"... 197 7.1e-19 4
UNIPROTKB|Q8IIW0 - symbol:PF11_0053 "PfSNF2L" species:363... 197 7.1e-19 4
UNIPROTKB|F1NVT7 - symbol:CHD6 "Uncharacterized protein" ... 212 7.9e-19 4
UNIPROTKB|I3LDG1 - symbol:LOC100738357 "Uncharacterized p... 211 8.5e-19 2
ZFIN|ZDB-GENE-070228-1 - symbol:ercc6 "excision repair cr... 155 1.7e-18 4
UNIPROTKB|Q6ZRS2 - symbol:SRCAP "Helicase SRCAP" species:... 181 2.3e-18 4
UNIPROTKB|F1RG74 - symbol:SRCAP "Uncharacterized protein"... 181 2.3e-18 4
UNIPROTKB|E1BC33 - symbol:LOC788113 "Uncharacterized prot... 181 2.4e-18 4
POMBASE|SPAC144.05 - symbol:SPAC144.05 "ATP-dependent DNA... 190 2.5e-18 5
SGD|S000000449 - symbol:ISW1 "ATPase subunit of imitation... 188 2.7e-18 4
UNIPROTKB|Q5FWR0 - symbol:smarcad1 "SWI/SNF-related matri... 142 3.0e-18 4
UNIPROTKB|I3LTT5 - symbol:SMARCA1 "Uncharacterized protei... 180 3.6e-18 4
ZFIN|ZDB-GENE-050522-499 - symbol:smarcad1 "SWI/SNF-relat... 133 5.5e-18 5
UNIPROTKB|F1NLW6 - symbol:CHD6 "Uncharacterized protein" ... 212 7.0e-18 4
UNIPROTKB|F1NLV5 - symbol:CHD6 "Uncharacterized protein" ... 212 7.0e-18 4
WARNING: Descriptions of 387 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2008096 [details] [associations]
symbol:AT1G50410 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] [GO:0006816 "calcium ion transport" evidence=RCA]
[GO:0010413 "glucuronoxylan metabolic process" evidence=RCA]
[GO:0045492 "xylan biosynthetic process" evidence=RCA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000241058 EMBL:AY039939 EMBL:AY142669
IPI:IPI00533542 RefSeq:NP_564568.1 UniGene:At.15795
ProteinModelPortal:Q94BR5 SMR:Q94BR5 PaxDb:Q94BR5 PRIDE:Q94BR5
EnsemblPlants:AT1G50410.1 GeneID:841463 KEGG:ath:AT1G50410
TAIR:At1g50410 InParanoid:Q94BR5 OMA:EVRVMIM PhylomeDB:Q94BR5
ProtClustDB:CLSN2684720 ArrayExpress:Q94BR5 Genevestigator:Q94BR5
Uniprot:Q94BR5
Length = 981
Score = 2219 (786.2 bits), Expect = 5.3e-230, P = 5.3e-230
Identities = 478/821 (58%), Positives = 564/821 (68%)
Query: 111 GQLQTVNPRIANVASADYEKISSQQALKRTLP-AFPQPHSLNTKSKSSVENMNSSQIRDT 169
G V RI N++ DYEK SSQQA KRT P F +P + N N+S R
Sbjct: 85 GNGSIVTSRIPNISVGDYEKFSSQQAFKRTHPPTFSRP-PFPPRPDIGTSNGNASHFR-- 141
Query: 170 FGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSD 229
G A+ G V + G RILP S+ HG S S + F G SD
Sbjct: 142 -GGAHDDLGMGRVTN--------------------GTRILPPSVAHGTSASPSHFNGLSD 180
Query: 230 LAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQK 289
+R+G +ER DERLIYQAAL++LNQPK E LP GLLSV L+KHQKIALAWM QK
Sbjct: 181 PMHRNGIGEERNSENDERLIYQAALQELNQPKSEVDLPAGLLSVPLMKHQKIALAWMFQK 240
Query: 290 ETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEXXXXXXXXXXX 349
ET SLHC+GGILADDQGLGKT+S IALI Q ++K K++ GNQ+ E
Sbjct: 241 ETNSLHCMGGILADDQGLGKTVSTIALILKQMH-EAKLKSKNSGNQEAEALDLDADDESE 299
Query: 350 XXXX---XKVKE-TGESDD--IKPVP--EVXXXXXXXXXXXPAAGTLVVCPASVLRQWAR 401
K +G + D IK E PAAGTL+VCPASV+RQWAR
Sbjct: 300 NAFEKPESKASNGSGVNGDSGIKKAKGEEASTSTRKFNRKRPAAGTLIVCPASVVRQWAR 359
Query: 402 ELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEK 461
EL++KV D+A LSVLIYHGG+RTKDP+ELAKYDVV+TTY+IV+NEVPKQP VD++E DEK
Sbjct: 360 ELDEKVTDEAKLSVLIYHGGNRTKDPIELAKYDVVMTTYAIVSNEVPKQPLVDDDENDEK 419
Query: 462 NGETYGLSSEFSVNKKRKKIXXXXXXXXXXXXXXXXX-XIDYGCGPLAKVGWFRVVLDEA 520
N E YGL+S FS+NKKRK + D G LAKVGWFRVVLDEA
Sbjct: 420 NSEKYGLASGFSINKKRKNVVGTTKKSKKKKGNNNAGDSSDPDSGTLAKVGWFRVVLDEA 479
Query: 521 QTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIK 580
QTIKNHRTQVARACC LRAKRRWCLSGTPIQN+IDDLYSYFRFLKYDPYAVYKSF IK
Sbjct: 480 QTIKNHRTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFCHQIK 539
Query: 581 IPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYK 640
PISRNSL GYKKLQAVLRAIMLRRTKGT +DGQPIINLPPKTI+L++VDFS EE +FY
Sbjct: 540 GPISRNSLQGYKKLQAVLRAIMLRRTKGTLLDGQPIINLPPKTINLSQVDFSVEERSFYV 599
Query: 641 KLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAK 700
KLESDS +FKA+A AGT+NQNYANILLMLLRLRQACDHP LVK Y+ DSVGK+S E K
Sbjct: 600 KLESDSRSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPQLVKRYNSDSVGKVSEEAVK 659
Query: 701 RLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPR 760
+LP++ L+ LLSRLE SS ICCVC DPPED VVT+CGH+FCYQC S+YITGD++ CPAPR
Sbjct: 660 KLPKEDLVSLLSRLE-SSPICCVCHDPPEDPVVTLCGHIFCYQCVSDYITGDEDTCPAPR 718
Query: 761 CKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQC 820
C+EQL DVVFSK+TL++CV+DD G S ++ DKS + E+ SSKI+ VLDIL +
Sbjct: 719 CREQLAHDVVFSKSTLRSCVADDLGCSSSEDNSHDKSVFQNGEFSSSKIKAVLDILQSLS 778
Query: 821 ELNTKCSIVEIHDLAGSNGSS-----------AVHSKSPIE------GPIKSIVFSQWTR 863
T S + +A S+ + K+ ++ GPIK+I+FSQWT
Sbjct: 779 NQGTSNS-TQNGQMASSSQQPNDDDDDDDDDVTIVEKTSLKSTPSNGGPIKTIIFSQWTG 837
Query: 864 MLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
MLDLVE SL ++ I++RRLDGTMSL ARDRAVK+F+ D +V
Sbjct: 838 MLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPDV 878
>TAIR|locus:2095360 [details] [associations]
symbol:AT3G20010 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0010014 "meristem initiation" evidence=RCA] [GO:0010050
"vegetative phase change" evidence=RCA] [GO:0010073 "meristem
maintenance" evidence=RCA] [GO:0010267 "production of ta-siRNAs
involved in RNA interference" evidence=RCA] [GO:0016246 "RNA
interference" evidence=RCA] [GO:0031047 "gene silencing by RNA"
evidence=RCA] [GO:0031507 "heterochromatin assembly" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0045787 "positive regulation of cell
cycle" evidence=RCA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AP002050 HSSP:Q99728
HOGENOM:HOG000241058 ProtClustDB:CLSN2684720 IPI:IPI00543291
RefSeq:NP_188635.1 UniGene:At.43523 ProteinModelPortal:Q9LHE4
SMR:Q9LHE4 PaxDb:Q9LHE4 PRIDE:Q9LHE4 EnsemblPlants:AT3G20010.1
GeneID:821539 KEGG:ath:AT3G20010 TAIR:At3g20010 InParanoid:Q9LHE4
OMA:SSAICYE PhylomeDB:Q9LHE4 Genevestigator:Q9LHE4 Uniprot:Q9LHE4
Length = 1047
Score = 1698 (602.8 bits), Expect = 8.6e-219, Sum P(2) = 8.6e-219
Identities = 328/533 (61%), Positives = 407/533 (76%)
Query: 383 PAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442
PAAGTL+VCPASV+RQWAREL++KV +++ LSVL+YHG +RTKDP ELA+YDVV+TTY+I
Sbjct: 412 PAAGTLIVCPASVVRQWARELDEKVSEESKLSVLVYHGSNRTKDPNELAEYDVVVTTYAI 471
Query: 443 VTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKIXXXXXXXXXXXXXXXX-XXID 501
VTNE P + VDE+E DEKN + YGL+S FS NKKRK + +
Sbjct: 472 VTNEAPNKFLVDEDENDEKNTDRYGLASGFSNNKKRKVVVGASKKSKRRGRKSTNDTSSE 531
Query: 502 YGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYF 561
CGPL KVGWFR+VLDEAQTIKN+RTQ+AR+CC+LRAKRRWCLSGTPIQN+IDDLYSYF
Sbjct: 532 PDCGPLGKVGWFRIVLDEAQTIKNYRTQMARSCCTLRAKRRWCLSGTPIQNTIDDLYSYF 591
Query: 562 RFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPP 621
RFL+YDPYAVYKSFYSTIK+PISRNS GYKKLQAVLRAIMLRRTKGT +DG+PIINLPP
Sbjct: 592 RFLRYDPYAVYKSFYSTIKVPISRNSCQGYKKLQAVLRAIMLRRTKGTLLDGKPIINLPP 651
Query: 622 KTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPL 681
K ++L++VDFS E +FYKKLE+DS +FKA+ADAGT++QNYANILL+LLRLRQACDHP
Sbjct: 652 KVVNLSQVDFSVAERSFYKKLEADSRSQFKAYADAGTLSQNYANILLLLLRLRQACDHPQ 711
Query: 682 LVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFC 741
LVK Y+ D VGK+S +RLPR+ L++RLE+SSAIC C++PPE VVT+CGH+FC
Sbjct: 712 LVKRYNSDPVGKVSEAAVRRLPREARSRLINRLESSSAICYECNEPPEKPVVTLCGHIFC 771
Query: 742 YQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILD 801
Y+C EYITGD+N CP PRCK+QL DVVFS+++L+NC SDD G S + D+S
Sbjct: 772 YECVLEYITGDENTCPVPRCKQQLARDVVFSESSLRNCTSDDSGCSSSHDNGLDRSVFQK 831
Query: 802 NEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSS----------AVHSKSPIEG 851
++ SSKI+ VLDIL + + ++ S + S +HS SP +G
Sbjct: 832 RDFCSSKIKAVLDILQSLSQPDSPNSAQHGQMPSSSRPYDDDDVTIVEPMRLHSSSPSQG 891
Query: 852 PIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
+K+I+FSQWT MLDLVE + + I++RRLDGTMSL ARDRAVK+F+ +V
Sbjct: 892 AVKTIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEFSKKPDV 944
Score = 438 (159.2 bits), Expect = 8.6e-219, Sum P(2) = 8.6e-219
Identities = 105/215 (48%), Positives = 132/215 (61%)
Query: 127 DYEKISSQQALKRTLPAFPQPHSLNTKS-KSSVENMNSSQIRDTFGNAYHLAGPSTVNSK 185
DYE+ SQQALKRTLP P L ++S +++ N S+ FG Y S V +K
Sbjct: 134 DYERPLSQQALKRTLPPSFNPPPLPSRSGTNNIRNAGGSR----FGADYSHPAVSAVGNK 189
Query: 186 GYIRDYYVKKNDD-DIMM-YEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVG 243
D+Y + + I G RILP SL HG S S+ G SD +R G ++R
Sbjct: 190 STFGDHYSGAHAEIGIQRGVNGVRILPPSLTHGTSASVLHHAGSSDPMHRFGGGEDRNPD 249
Query: 244 GDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILAD 303
DERL+YQAAL+ LNQP E+ LP G LSV L++HQKIALAWM QKET S +C GGILAD
Sbjct: 250 NDERLVYQAALQVLNQPMTESDLPPGTLSVPLMRHQKIALAWMFQKETSSFNCPGGILAD 309
Query: 304 DQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTE 338
DQGLGKT+S IALI Q+ + S+ K+E Q+TE
Sbjct: 310 DQGLGKTVSTIALILKQK-IVSQLKSESSCKQETE 343
Score = 109 (43.4 bits), Expect = 5.3e-184, Sum P(2) = 5.3e-184
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 95 NGQADDSHYLSGNKN-VGQLQTVNPRIANVASADYEKISSQQALKRTLP-AFPQPHSLNT 152
NG + D+ +K G TVN RI++ + ADY ++SS+QALKRTLP +F P
Sbjct: 58 NGASSDTSRPGVSKPFTGNGNTVNSRISSGSGADYVRLSSEQALKRTLPPSFNSPPLPAR 117
Query: 153 KSKSSVENMNSSQI 166
+++ N + S++
Sbjct: 118 SGTNNISNASGSRV 131
Score = 38 (18.4 bits), Expect = 1.7e-176, Sum P(2) = 1.7e-176
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 27 RQSGNVRILPPWATKAAVNARTGYGGQSQKVPSF 60
R VRILPP T + + G S + F
Sbjct: 207 RGVNGVRILPPSLTHGTSASVLHHAGSSDPMHRF 240
>TAIR|locus:2008470 [details] [associations]
symbol:EDA16 "embryo sac development arrest 16"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0009553
"embryo sac development" evidence=IMP] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
Prosite:PS00518 EMBL:CP002684 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 GO:GO:0009553 InterPro:IPR017907 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 IPI:IPI00518434 RefSeq:NP_176309.2
UniGene:At.36526 UniGene:At.68763 ProteinModelPortal:F4HTG1
SMR:F4HTG1 PRIDE:F4HTG1 EnsemblPlants:AT1G61140.1 GeneID:842407
KEGG:ath:AT1G61140 OMA:WADELHK Uniprot:F4HTG1
Length = 1280
Score = 1579 (560.9 bits), Expect = 5.1e-164, Sum P(2) = 5.1e-164
Identities = 359/725 (49%), Positives = 459/725 (63%)
Query: 196 NDDDIMMYE--GNRILPSSLMHGKS-VSMTQFGGPSDLAYRSGSADERAVGGDERLIYQA 252
+D D+ + E G +P + K V +++ S +SG + E +I+QA
Sbjct: 476 DDSDVCIIEPYGQSAIPHRPLAMKMPVVSSEYSTVSHNFNQSGGL--KLQSNKENMIFQA 533
Query: 253 ALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTIS 312
AL+DL QP EA LPDG+L+V LL+HQ+IAL+WM QKET C GGILADDQGLGKT+S
Sbjct: 534 ALQDLTQPNSEAILPDGVLTVPLLRHQRIALSWMAQKETSGFPCSGGILADDQGLGKTVS 593
Query: 313 IIALIQMQRSLQSKSKTEVLGNQKTEXXXXXXXXXXXXXXXXKVKETGESDDIKPVPEVX 372
IALI +RS +++ E + + + K S + +V
Sbjct: 594 TIALILKERSKPAQACEESTKKEIFDLESETGECAPLKPSG-RSKHFEHSQLLSNENKVG 652
Query: 373 XXXXXXXXXXPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK 432
PAAGTLVVCP SV+RQWA EL KV +A LSVL+YHG SRTKDP ELAK
Sbjct: 653 GDSVGKVTGRPAAGTLVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAK 712
Query: 433 YDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYG--LSSEFSVNKKRKKIXXXXXXXXX 490
YDVV+TT+SIV+ EVPKQP VD+E+ +EK+G G ++ F NKKRK
Sbjct: 713 YDVVVTTFSIVSMEVPKQPLVDDED-EEKDGVHDGGTAATGFCSNKKRK------YPPDS 765
Query: 491 XXXXXXXXXIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPI 550
+++ GPLAKV WFRVVLDEAQ+IKN++TQVARAC LRAKRRWCLSGTPI
Sbjct: 766 KKKGSKKKKVEFLSGPLAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPI 825
Query: 551 QNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTF 610
QNSIDDLYSYFRFLKYDPY+ Y F STIK PI+RN + GY+KLQA+L+ +MLRRTKG+
Sbjct: 826 QNSIDDLYSYFRFLKYDPYSSYVLFCSTIKNPITRNPVKGYQKLQAILKTVMLRRTKGSL 885
Query: 611 IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLML 670
+DG+PII+LPPK+I L KVDF+ EE FY KLE++S +F+ +A+AGTV QNY NILLML
Sbjct: 886 LDGKPIISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREYAEAGTVKQNYVNILLML 945
Query: 671 LRLRQACDHPLLVK-EYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPE 729
LRLRQACDHPLLV EY F + G K++ D S AIC +C+D PE
Sbjct: 946 LRLRQACDHPLLVNGEYSFTWESSV-GLAKKQIQSD----------ASLAICGICNDAPE 994
Query: 730 DSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSD--DGGGS 787
D+V ++CGHVFC QC E +TGD N CP C +L + SKT L + + D + S
Sbjct: 995 DAVASVCGHVFCKQCIYERLTGDSNHCPFANCNVRLTISSLSSKTRLDDAMPDMQERATS 1054
Query: 788 PTDSPFADKSGILDNEYISSKIRTVLDILHT---QCELNTKCSIVEIHDLAGSNGSSAVH 844
+ SP +D+ D Y SSKI+ L+IL + +L I E + +G + + +
Sbjct: 1055 NSLSPCSDE----DLPYGSSKIKAALEILQSLPKAHDLTDSNQISENREYSGLSITPVKN 1110
Query: 845 SKSPIEGPIK-----SIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++ PIK +IVFSQWT+ML+L+E SL IQYRRLDGTMS+ ARD+AV+DFN
Sbjct: 1111 EGMSVDVPIKVAGEKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFN 1170
Query: 900 TDREV 904
T EV
Sbjct: 1171 TLPEV 1175
Score = 39 (18.8 bits), Expect = 5.1e-164, Sum P(2) = 5.1e-164
Identities = 25/106 (23%), Positives = 39/106 (36%)
Query: 100 DSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLNTKSKSSVE 159
D YLSG N + ++ D EK S A + LP+ K S
Sbjct: 358 DDAYLSGETNRWWSGASSSAVSY--QTDIEKGYSYMAPQTALPS-------QDSGKISSN 408
Query: 160 NMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYEG 205
+ S DT Y + PS V +D+ +++ D + + G
Sbjct: 409 HFYDS---DTCLQ-YVVEDPSPVTQNNEYKDFQIQQGDREYIQPRG 450
>TAIR|locus:2089318 [details] [associations]
symbol:AT3G16600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
Pfam:PF00097 Prosite:PS00518 GO:GO:0005524 EMBL:CP002686
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:QACNHPQ
IPI:IPI00536054 RefSeq:NP_188282.1 UniGene:At.53337
ProteinModelPortal:F4J2R0 PRIDE:F4J2R0 EnsemblPlants:AT3G16600.1
GeneID:820911 KEGG:ath:AT3G16600 Uniprot:F4J2R0
Length = 638
Score = 405 (147.6 bits), Expect = 1.0e-121, Sum P(4) = 1.0e-121
Identities = 74/103 (71%), Positives = 85/103 (82%)
Query: 505 GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFL 564
G L +V W RVVLDEA TIKNHRT +A+AC SLRAKRRWCL+GTPI+N +DDLYSYFRFL
Sbjct: 206 GALGRVRWLRVVLDEAHTIKNHRTLIAKACFSLRAKRRWCLTGTPIKNKVDDLYSYFRFL 265
Query: 565 KYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTK 607
+Y PYA+ SF+ IK PI + LHGYKKLQA+LR IMLRRTK
Sbjct: 266 RYHPYAMCNSFHQRIKAPIDKKPLHGYKKLQAILRGIMLRRTK 308
Score = 402 (146.6 bits), Expect = 1.0e-121, Sum P(4) = 1.0e-121
Identities = 76/150 (50%), Positives = 107/150 (71%)
Query: 634 EEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDF-DSVG 692
+EW+FY+KLE +S KF+ +A GT++++ A +L+MLLRLRQAC+HP LV Y D+
Sbjct: 308 KEWSFYRKLELNSRWKFEEYAADGTLHEHMAYLLVMLLRLRQACNHPQLVNGYSHSDTTR 367
Query: 693 KISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGD 752
K+S + + PR+ LI L L+ SS C VCSDPP+D VVT+CGHVFCY+C S I GD
Sbjct: 368 KMS-DGVRVAPRENLIMFLDLLKLSSTTCSVCSDPPKDPVVTLCGHVFCYECVSVNINGD 426
Query: 753 DNMCPAPRCKEQLGADVVFSKTTLKNCVSD 782
+N CPA C QL DVVF+++ +++C++D
Sbjct: 427 NNTCPALNCHSQLKHDVVFTESAVRSCIND 456
Score = 288 (106.4 bits), Expect = 1.0e-121, Sum P(4) = 1.0e-121
Identities = 58/84 (69%), Positives = 71/84 (84%)
Query: 245 DERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADD 304
+ER+IYQAAL+DL QPK E LP G+L+V L++HQKIAL WM +KE RS HCLGGILADD
Sbjct: 23 NERVIYQAALQDLKQPKTEKDLPPGVLTVPLMRHQKIALNWMRKKEKRSRHCLGGILADD 82
Query: 305 QGLGKTISIIALIQMQRSLQSKSK 328
QGLGKTIS I+LI +Q+ L+S+SK
Sbjct: 83 QGLGKTISTISLILLQK-LKSQSK 105
Score = 256 (95.2 bits), Expect = 1.0e-121, Sum P(4) = 1.0e-121
Identities = 45/75 (60%), Positives = 63/75 (84%)
Query: 384 AAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIV 443
+ GTL+VCPASV++QWARE+++KV D+ LSVL++HG RTKDP E+A YDVV+TTY+IV
Sbjct: 114 SGGTLIVCPASVVKQWAREVKEKVSDEHKLSVLVHHGSHRTKDPTEIAIYDVVMTTYAIV 173
Query: 444 TNEVPKQPSVDEEEA 458
TNEVP+ P ++ ++
Sbjct: 174 TNEVPQNPMLNRYDS 188
>POMBASE|SPBC23E6.02 [details] [associations]
symbol:rrp2 "ATP-dependent DNA helicase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IGI]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISM] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISM] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=ISM] [GO:0045005 "maintenance of fidelity
involved in DNA-dependent DNA replication" evidence=IMP]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 PomBase:SPBC23E6.02 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GO:GO:0006338 GO:GO:0000790 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004003 GO:GO:0000724 GO:GO:0004842
InterPro:IPR017907 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0045005
OrthoDB:EOG4NZZ2M PIR:T39936 RefSeq:NP_596602.1
ProteinModelPortal:O60177 STRING:O60177 EnsemblFungi:SPBC23E6.02.1
GeneID:2540464 KEGG:spo:SPBC23E6.02 OMA:ACCHSYL NextBio:20801591
Uniprot:O60177
Length = 1040
Score = 540 (195.1 bits), Expect = 9.3e-68, Sum P(3) = 9.3e-68
Identities = 131/416 (31%), Positives = 214/416 (51%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
P + W+RV+LDEAQTIKN T AR CC L + RWCLSGTP+QN +++ YS +FL+
Sbjct: 527 PFFEAEWYRVILDEAQTIKNRNTLAARGCCLLESTYRWCLSGTPMQNGVEEFYSLIKFLR 586
Query: 566 YDPYAVYKSFYSTIKIPISRN--SLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
PY+ + SF IP+S N + K+ + +L+A++LRRTK T IDG+PI+ LPPKT
Sbjct: 587 IKPYSDWSSFSKDFTIPLSSNINTSAPMKRFRGLLKAVLLRRTKNTKIDGKPILTLPPKT 646
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ D S E FY L+S + + + + GT+ +Y ++L++LLRLRQAC HP L+
Sbjct: 647 AVKSETDLSSSEMEFYNTLQSGAQIQMRKYLQEGTITTHYGSLLVLLLRLRQACCHPWLI 706
Query: 684 --KEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAI-CCVCSDP-PEDSVVTMCGHV 739
+E D + + + + + ++RL+ + C +C D E ++ CGH
Sbjct: 707 VAREAAVDDNDSFQAKN-RAIYNQIYPEAVNRLKLIETLQCSLCMDVVAELLIIVPCGHF 765
Query: 740 FCYQCASEYITGDDNMCP-------APRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSP 792
C +C + IT ++M +P+C + + + ++ L + G +P
Sbjct: 766 LCRECLTHVITSSEDMAKQTSNENISPKCS--VCEEYIDTERLLSYALFRRYSGM---AP 820
Query: 793 FADKSGILDNEYISSKI-RTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPI-- 849
D L E IS + + +IL + ++ K H + A+++ I
Sbjct: 821 IVDADNKLRTENISELLPKQYSNILENR-QMGMKIFTDPKHWTTSTKIEKALNAVKEIIK 879
Query: 850 EGPI-KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
+ P K ++FSQ+ L+L Q I+Y G +S R++A+ +F D V
Sbjct: 880 KQPTDKILIFSQFVSFLELFTVPFRQEGIKYLMYTGGLSTAERNQALINFEVDPNV 935
Score = 133 (51.9 bits), Expect = 9.3e-68, Sum P(3) = 9.3e-68
Identities = 33/77 (42%), Positives = 47/77 (61%)
Query: 257 LNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIAL 316
+N P + P GL+ L++HQK L W+ + E S GGILADD GLGKT+ +AL
Sbjct: 373 VNDPTIREGTPAGLIPT-LMEHQKEGLMWLKRLEESSKK--GGILADDMGLGKTVQALAL 429
Query: 317 IQMQRSLQSKS-KTEVL 332
+ + R +SKS KT ++
Sbjct: 430 L-VTRPPESKSVKTTLI 445
Score = 129 (50.5 bits), Expect = 9.3e-68, Sum P(3) = 9.3e-68
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT-KDPVELAKYDVVLTTYSIVTN 445
TL++ P S+L+QW E+ K+ +V I+HG S+ K +L YD+VLTTY+++
Sbjct: 443 TLIITPVSLLQQWHNEILTKIAPSHRPTVYIHHGSSKKHKIAEQLMSYDIVLTTYNVIAY 502
Query: 446 EVPKQPSVDEEEAD 459
E + + D+ D
Sbjct: 503 EFKNKMAYDKSIED 516
>ASPGD|ASPL0000030172 [details] [associations]
symbol:AN5483 species:162425 "Emericella nidulans"
[GO:0045005 "maintenance of fidelity involved in DNA-dependent DNA
replication" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:BN001305 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000094 OrthoDB:EOG4NZZ2M
RefSeq:XP_663087.1 ProteinModelPortal:Q5B1U7
EnsemblFungi:CADANIAT00003605 GeneID:2871773 KEGG:ani:AN5483.2
HOGENOM:HOG000216663 OMA:LETIRPD Uniprot:Q5B1U7
Length = 1184
Score = 467 (169.5 bits), Expect = 7.4e-66, Sum P(4) = 7.4e-66
Identities = 96/248 (38%), Positives = 147/248 (59%)
Query: 505 GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFL 564
GP +K W+RV++DEAQ IKN TQ A ACC L RWC+SGTP+ N++++L+S +FL
Sbjct: 615 GPTSK--WYRVIIDEAQCIKNRATQSAIACCRLNTTYRWCMSGTPMMNNVEELHSLLKFL 672
Query: 565 KYDPYAVYKSFYSTIKIPISRNSLHGYKK----LQAVLRAIMLRRTKGTFIDGQPIINLP 620
+ PYA F P+ N+ H +K L+ +L+A++LRRTK + IDG+PI ++P
Sbjct: 673 RIRPYANLDRFKRDFSAPLKTNNKHLQEKAMTQLRILLKAVLLRRTKHSKIDGKPIFDIP 732
Query: 621 PKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHP 680
P+ FS++E YK LE+ + +F + +AGTV +NY+NIL++LLRLRQAC HP
Sbjct: 733 PRFSEKVHAVFSEDELELYKALEAKTQLQFNRYLEAGTVGRNYSNILVLLLRLRQACCHP 792
Query: 681 LLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAI-CCVCSDPPEDSVVTM-CGH 738
L+ ++ G ++++RL + + C VC D ++ ++ CGH
Sbjct: 793 HLITDFSVKLNEASEGVDFIANAEQFSNEVVARLRDNENLECPVCIDAVDNPIIFFPCGH 852
Query: 739 VFCYQCAS 746
C +C S
Sbjct: 853 GTCSECFS 860
Score = 150 (57.9 bits), Expect = 7.4e-66, Sum P(4) = 7.4e-66
Identities = 76/273 (27%), Positives = 115/273 (42%)
Query: 81 LQMLPGFSDDHQMSNGQADDS--HYLSGNKNVGQLQ--------TVNPRIANVASADY-- 128
L P + +H S Q+ S H S + ++ ++ T NPRI + S Y
Sbjct: 270 LSAAPSLNANHAFSGPQSGSSKIHPDSDDSDLAEISPQDFQSRITSNPRITSRPS-QYVP 328
Query: 129 EKISSQQALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYI 188
+ ++ + T + P++ + ++ N FGN+ P ++ S I
Sbjct: 329 NRGNADLGISNTAKSVQNPYAYHYPGPAAANGSNG------FGNSAMSRWPQSMPSAMAI 382
Query: 189 RDYYVKKNDDDIMMYEGNRILPSSLMHGKSVS--MTQFGGPSDLAYRSGSADERAVGGDE 246
Y K D++ N I PS + G ++ P+ LA R D GGD
Sbjct: 383 --Y---KGARDMLSGTTN-ISPSRMPLGNIITSGFLDDNYPTALAGRD-IRDFYEDGGDP 435
Query: 247 RLIYQAALEDLN--QPKVEATLPD-----GLLSVNLLKHQKIALAWMLQKETRSLHCLGG 299
+ I Q + L +P + + D L LL HQK+ LAWM KE GG
Sbjct: 436 KQINQEIKQLLETIRPDADLSAKDREGTPAALKYPLLDHQKLGLAWMRSKEECDQK--GG 493
Query: 300 ILADDQGLGKTISIIALIQMQRSLQSKSKTEVL 332
ILADD GLGKTI IAL+ + S + KT ++
Sbjct: 494 ILADDMGLGKTIQAIALMVSRPSSDPERKTTLI 526
Score = 122 (48.0 bits), Expect = 7.4e-66, Sum P(4) = 7.4e-66
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++ P ++++QW RE+E + L V I HG +L KYDVVLTT+ ++ +E
Sbjct: 524 TLIIAPVALMQQWKREIEKMLSPGHRLQVYILHGDKGRTSFSDLKKYDVVLTTFGMLASE 583
Query: 447 VPK 449
+ +
Sbjct: 584 LKR 586
Score = 102 (41.0 bits), Expect = 7.4e-66, Sum P(4) = 7.4e-66
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREVCSL 907
K I+FSQ+T +LDL+E + + +YRR DG+M R+ AV DF TD C +
Sbjct: 1022 KIIIFSQFTSLLDLLEIPIAREGHRYRRYDGSMKPADRNSAVLDF-TDDPSCKV 1074
>TAIR|locus:2162504 [details] [associations]
symbol:RAD5 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IMP;IDA] [GO:0045003 "double-strand break
repair via synthesis-dependent strand annealing" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
[GO:0009294 "DNA mediated transformation" evidence=IMP]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS00690 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0016568 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 EMBL:AB006699 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0009294 GO:GO:0045003 KO:K15505 EMBL:AK228695 IPI:IPI00523984
RefSeq:NP_197667.1 UniGene:At.31042 ProteinModelPortal:Q9FNI6
SMR:Q9FNI6 STRING:Q9FNI6 PaxDb:Q9FNI6 PRIDE:Q9FNI6
EnsemblPlants:AT5G22750.1 GeneID:832338 KEGG:ath:AT5G22750
GeneFarm:4640 TAIR:At5g22750 HOGENOM:HOG000029930 InParanoid:Q9FNI6
OMA:KPIMLRR PhylomeDB:Q9FNI6 ProtClustDB:CLSN2686824
Genevestigator:Q9FNI6 GermOnline:AT5G22750 Uniprot:Q9FNI6
Length = 1029
Score = 414 (150.8 bits), Expect = 1.7e-61, Sum P(5) = 1.7e-61
Identities = 83/175 (47%), Positives = 113/175 (64%)
Query: 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPY 569
V WFR+VLDEA TIKN ++Q++ A +L A RRWCL+GTPIQN+++DLYS RFL+ +P+
Sbjct: 565 VRWFRIVLDEAHTIKNSKSQISLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPW 624
Query: 570 AVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKG-TFIDGQPIINLPPKTISLTK 628
+ + ++ P G K +Q++L+ IMLRRTK T +G+PI+ LPP +
Sbjct: 625 GTWAWWNKLVQKPFEEGDERGLKLVQSILKPIMLRRTKSSTDREGRPILVLPPADARVIY 684
Query: 629 VDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
+ S+ E FY L S KF F + G V NYA+IL +LLRLRQ CDHP LV
Sbjct: 685 CELSESERDFYDALFKRSKVKFDQFVEQGKVLHNYASILELLLRLRQCCDHPFLV 739
Score = 169 (64.5 bits), Expect = 1.7e-61, Sum P(5) = 1.7e-61
Identities = 49/159 (30%), Positives = 75/159 (47%)
Query: 298 GGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEXXXXXXXXXXXXXXXXKVK 357
GGILAD GLGKT+ I+L+ + S ++ S + N + + K
Sbjct: 414 GGILADAMGLGKTVMTISLL-LAHSWKAASTGFLCPNYEGDKVISSSVDDLTSPPVKATK 472
Query: 358 ETGESDDIKPVPEVXXXXXXXXXXXPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLI 417
G + V G L+VCP ++L QW E+E +LSV +
Sbjct: 473 FLGFDKRLLEQKSVLQN----------GGNLIVCPMTLLGQWKTEIEMHAKP-GSLSVYV 521
Query: 418 YHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEE 456
++G SR KD L++ DVV+TTY ++T+E ++ S D E
Sbjct: 522 HYGQSRPKDAKLLSQSDVVITTYGVLTSEFSQENSADHE 560
Score = 120 (47.3 bits), Expect = 1.7e-61, Sum P(5) = 1.7e-61
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREVCSL 907
KSI+FSQWT LDL++ L+++ + RLDGT+S R++ +K+F+ D + L
Sbjct: 881 KSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSEDGSILVL 934
Score = 81 (33.6 bits), Expect = 1.7e-61, Sum P(5) = 1.7e-61
Identities = 20/74 (27%), Positives = 34/74 (45%)
Query: 692 GKISG--EMAKRLPRDMLI-DLLSRLETSS-AICCVCSDPPEDSVVTMCGHVFCYQCA-S 746
GK SG K +P + + +++ L C +C + ED+V+T C H C +C +
Sbjct: 761 GKSSGLEREGKDVPSEAFVQEVVEELRKGEQGECPICLEALEDAVLTPCAHRLCRECLLA 820
Query: 747 EYITGDDNMCPAPR 760
+ +CP R
Sbjct: 821 SWRNSTSGLCPVCR 834
Score = 57 (25.1 bits), Expect = 1.7e-61, Sum P(5) = 1.7e-61
Identities = 38/149 (25%), Positives = 56/149 (37%)
Query: 146 QPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYI-RDYYVKKNDDDIMMYE 204
Q HS T K++ S N + L G + D+Y KK + +
Sbjct: 233 QKHSA-TSFKTASNTAEESMFHP-LPNLFRLLGLIPFKKAEFTPEDFYSKKRP--LSSKD 288
Query: 205 GNRILPSSLMH-GKSVSMTQF--GGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPK 261
G+ I P+SL+ K +M Q G ++ G D GD + L+++ P
Sbjct: 289 GSAI-PTSLLQLNKVKNMNQDANGDENEQCISDGDLDNIVGVGDS-----SGLKEMETPH 342
Query: 262 VEATLPDGLLSVNLLKHQKIALAWMLQKE 290
L L +QK AL WM Q E
Sbjct: 343 T--------LLCELRPYQKQALHWMTQLE 363
Score = 42 (19.8 bits), Expect = 7.1e-09, Sum P(3) = 7.1e-09
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 569 YAVYKSFYSTIKIPISRNSLHGYKKLQAVL 598
++ + +F ++IP+SRN+ + +L L
Sbjct: 885 FSQWTAFLDLLQIPLSRNNF-SFVRLDGTL 913
Score = 39 (18.8 bits), Expect = 3.7e-46, Sum P(5) = 3.7e-46
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 244 GDERLIYQAALEDLNQPKVEAT 265
GD+ + ++++DL P V+AT
Sbjct: 452 GDK--VISSSVDDLTSPPVKAT 471
Score = 38 (18.4 bits), Expect = 1.5e-59, Sum P(5) = 1.5e-59
Identities = 18/96 (18%), Positives = 34/96 (35%)
Query: 151 NTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYEGNRILP 210
N + + E++N GN + G S + + +K D+ + + ++ L
Sbjct: 87 NHRVEEENESVNGGGEESVSGNEWWFVGCSELAGLSTCKGRKLKSGDELVFTFPHSKGLK 146
Query: 211 SSLMHGK---SVSMTQFGGPSDLAYRSGSADERAVG 243
GK G SD+ R + D +G
Sbjct: 147 PETTPGKRGFGRGRPALRGASDIV-RFSTKDSGEIG 181
Score = 38 (18.4 bits), Expect = 4.6e-46, Sum P(4) = 4.6e-46
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 203 YEGNRILPSSL--MHGKSVSMTQFGG 226
YEG++++ SS+ + V T+F G
Sbjct: 450 YEGDKVISSSVDDLTSPPVKATKFLG 475
>ZFIN|ZDB-GENE-030131-3306 [details] [associations]
symbol:hltf "helicase-like transcription factor"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518
ZFIN:ZDB-GENE-030131-3306 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:6596 HOVERGEN:HBG079192 KO:K15711 OMA:SNWIDQF
GeneTree:ENSGT00700000104586 HOGENOM:HOG000172619 OrthoDB:EOG47SSD6
EMBL:CR788256 IPI:IPI00500566 RefSeq:XP_693071.2 UniGene:Dr.105912
Ensembl:ENSDART00000099350 Ensembl:ENSDART00000132050 GeneID:564651
KEGG:dre:564651 NextBio:20885486 Uniprot:B0V118
Length = 942
Score = 434 (157.8 bits), Expect = 2.3e-60, Sum P(5) = 2.3e-60
Identities = 94/268 (35%), Positives = 141/268 (52%)
Query: 501 DYG---CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDL 557
D+G PL V W RVVLDE ++N ++A L+++RRW LSGTPIQNS+ DL
Sbjct: 477 DFGNKASSPLHNVKWLRVVLDEGHVVRNPNALQSKAVLELQSERRWILSGTPIQNSLKDL 536
Query: 558 YSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPII 617
+ FLK P+ V + + I+ P++ G K LQA+++ I LRRTK + + G+ ++
Sbjct: 537 FMLLSFLKLKPFDVKEWWSRIIQRPVTMGDRVGLKNLQALVKGITLRRTKNSKVGGRTLV 596
Query: 618 NLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQAC 677
LP + + + V S E Y++++ + + GT NYA++L +L+RLRQ C
Sbjct: 597 QLPERRVFVQYVTLSGMEREKYERVKGEGKNIVGRYFQEGTFMANYADVLTILMRLRQCC 656
Query: 678 DHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCG 737
HP LV Y V E+ +RL + + + L S S C +C D V+T C
Sbjct: 657 CHPSLVGNYTAADVPGTPSELRERLIQKITLVLNSG---SDEECAICLDSLRQPVITYCA 713
Query: 738 HVFCYQCASEYITGDDNMCPAPRCKEQL 765
HVFC C E I + P C+ Q+
Sbjct: 714 HVFCRPCICEVIRSEKEQAKCPLCRAQI 741
Score = 129 (50.5 bits), Expect = 2.3e-60, Sum P(5) = 2.3e-60
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 384 AAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIV 443
A TL+VCP SVL W + E + + V +Y+G R + L++ DVVLTTY+++
Sbjct: 415 ARATLIVCPLSVLSNWLDQFEQHIRTDVTVKVYLYYGSERNRSVSLLSEQDVVLTTYNVL 474
Query: 444 TNEVPKQPS 452
+++ + S
Sbjct: 475 SSDFGNKAS 483
Score = 100 (40.3 bits), Expect = 2.3e-60, Sum P(5) = 2.3e-60
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 850 EGP-IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF 898
E P +KS+V SQ+T LD++E +L ++ + RLDG++ AR +A++DF
Sbjct: 783 EDPTVKSMVVSQFTGFLDVLEVALREYGFSFTRLDGSLIQRARAKAIEDF 832
Score = 84 (34.6 bits), Expect = 2.3e-60, Sum P(5) = 2.3e-60
Identities = 17/21 (80%), Positives = 19/21 (90%)
Query: 297 LGGILADDQGLGKTISIIALI 317
LGGILADD GLGKT++ IALI
Sbjct: 274 LGGILADDMGLGKTLTTIALI 294
Score = 75 (31.5 bits), Expect = 2.3e-60, Sum P(5) = 2.3e-60
Identities = 27/94 (28%), Positives = 42/94 (44%)
Query: 204 EGNRILPSSLMHGKSVSMTQFGGPS------DLAYRSGSADERAVGGDE-RLIYQAALED 256
E NR + ++LM G ++ GG S DL S + +E + + +D
Sbjct: 148 EENREVVNNLMIGFGFNLDFRGGSSQTSLGRDLLGLSTKLSAIPLSAEELKNAFDKLFDD 207
Query: 257 LNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
L + K + P + LL HQK AL+WM +E
Sbjct: 208 LMEDKTKEMEPAEAVCTPLLSHQKQALSWMSSRE 241
>POMBASE|SPAC17A2.12 [details] [associations]
symbol:rrp1 "ATP-dependent DNA helicase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IGI]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISM] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISM] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=ISM]
[GO:0016567 "protein ubiquitination" evidence=ISM] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 PomBase:SPAC17A2.12
Prosite:PS00518 GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006338
GO:GO:0000790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004003
GO:GO:0000724 GO:GO:0004842 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0035861 GO:GO:0045005 OrthoDB:EOG4NZZ2M PIR:T37813
RefSeq:NP_594246.1 ProteinModelPortal:O13762 STRING:O13762
EnsemblFungi:SPAC17A2.12.1 GeneID:2542440 KEGG:spo:SPAC17A2.12
OMA:RIRDSEN NextBio:20803497 Uniprot:O13762
Length = 897
Score = 412 (150.1 bits), Expect = 4.2e-60, Sum P(5) = 4.2e-60
Identities = 101/285 (35%), Positives = 143/285 (50%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W+R+VLDEA TI+N T A+ C L AK RWCLSGTPIQN ID+ YS +FL+
Sbjct: 386 LLETSWYRIVLDEAHTIRNRDTLAAKCCVKLDAKYRWCLSGTPIQNHIDEFYSLLKFLRI 445
Query: 567 DPYAVYKSFYSTIKIPIS--RNSL--HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPK 622
PY V+ F I P+ R + K+L+ +L + + RRTK T ++ PI+NLPPK
Sbjct: 446 KPYCVWSLFAKDISRPLKSYRADIVEAALKRLRILLASTVFRRTKETRVNNLPIVNLPPK 505
Query: 623 TISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
TI V+ EE A Y + S + + + Y +L+ LLRLRQ C HP L
Sbjct: 506 TIRTVSVNLLPEERALYNEQMSSAQSLVDNYFNNDHDLSRYGFLLVSLLRLRQFCCHPWL 565
Query: 683 VKEYDFDSVGKI-SGEMAKRLPRDMLIDLLSRLETSSAI-CCVCSDPPEDSV-VTMCGHV 739
VK D+ +I E + + + + R+ T C VC DP V + CGH
Sbjct: 566 VKSSSLDNSFRIRDSENVRNACKSLDPLTIERIATLQDFNCSVCLDPCLAPVFIIPCGHF 625
Query: 740 FCYQCASEYIT---GDDN----MCPAPRCKEQLGADVVFSKTTLK 777
C +C S + G + + P C+ + D + T L+
Sbjct: 626 TCQECMSMLVGQKYGSSSTSTIIAKCPMCRGNIVQDSLVDATILQ 670
Score = 139 (54.0 bits), Expect = 4.2e-60, Sum P(5) = 4.2e-60
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVELAKYDVVLTTYSIVTNE 446
L+V ++L QWA EL KV LSV I+HG ++ D EL++YDVVLTTYS++ E
Sbjct: 304 LIVVSVALLHQWAEELSTKVHPSKKLSVYIHHGSTKKNLDSYELSQYDVVLTTYSMLAYE 363
Query: 447 VPKQ 450
+ KQ
Sbjct: 364 M-KQ 366
Score = 131 (51.2 bits), Expect = 4.2e-60, Sum P(5) = 4.2e-60
Identities = 37/77 (48%), Positives = 45/77 (58%)
Query: 256 DLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIA 315
DL Q K E GLL V+LL HQ AWM E +S C GG++ADD GLGKTI IA
Sbjct: 233 DL-QLKNEQVQSAGLL-VSLLPHQVEGHAWMESME-QSSKC-GGVMADDMGLGKTIQTIA 288
Query: 316 LIQMQRSLQSKSKTEVL 332
L+ Q+S KT ++
Sbjct: 289 LLLTQKSQDPLRKTNLI 305
Score = 95 (38.5 bits), Expect = 4.2e-60, Sum P(5) = 4.2e-60
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
K +V+SQ+++ L LV + L I++ R DGTMS R +++ FN D++V
Sbjct: 743 KILVYSQFSQYLCLVSHMLKLENIRHVRYDGTMSANQRQKSLHSFNNDKDV 793
Score = 44 (20.5 bits), Expect = 4.2e-60, Sum P(5) = 4.2e-60
Identities = 25/91 (27%), Positives = 36/91 (39%)
Query: 78 QEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQAL 137
Q LP F DH S S LS K Q + + N +++S +
Sbjct: 62 QSSSYSLPPF--DHPPSKNPTSSS--LSTRKRWRQKRLWS--FKNFPFRPPTRLTSTPSN 115
Query: 138 KRTLPAFPQPHSLNTKSKSSVENMNSSQIRD 168
+LP+ P S +T S SS+ + SS D
Sbjct: 116 SSSLPSIPS--SSSTPSISSIPHTTSSVSND 144
Score = 40 (19.1 bits), Expect = 1.1e-59, Sum P(5) = 1.1e-59
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 131 ISSQQALKRTLPAFPQPHSLNTKSKS 156
+ + Q+ +LP F P S N S S
Sbjct: 58 LQNSQSSSYSLPPFDHPPSKNPTSSS 83
Score = 37 (18.1 bits), Expect = 2.2e-59, Sum P(5) = 2.2e-59
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 147 PHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPST 181
PH+ ++ S + SS N HL PS+
Sbjct: 135 PHTTSSVSNDIPSVLGSSDHPIDLDNPEHLTPPSS 169
Score = 37 (18.1 bits), Expect = 7.1e-40, Sum P(4) = 7.1e-40
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 439 TYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKI 481
T S V+N++P + D N E S F K+ ++
Sbjct: 137 TTSSVSNDIPSVLGSSDHPIDLDNPEHLTPPSSFITAKQLSRL 179
>TAIR|locus:2158357 [details] [associations]
symbol:AT5G43530 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0009941 "chloroplast envelope" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS00690
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0009941 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AB016875 KO:K15505 OMA:PCAHRMC
HOGENOM:HOG000029930 ProtClustDB:CLSN2686824 IPI:IPI00529351
RefSeq:NP_199166.1 UniGene:At.55338 ProteinModelPortal:Q9FIY7
SMR:Q9FIY7 PaxDb:Q9FIY7 PRIDE:Q9FIY7 EnsemblPlants:AT5G43530.1
GeneID:834373 KEGG:ath:AT5G43530 GeneFarm:4653 TAIR:At5g43530
InParanoid:Q9FIY7 PhylomeDB:Q9FIY7 Genevestigator:Q9FIY7
GermOnline:AT5G43530 Uniprot:Q9FIY7
Length = 1277
Score = 430 (156.4 bits), Expect = 1.3e-59, Sum P(5) = 1.3e-59
Identities = 111/324 (34%), Positives = 173/324 (53%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
++ W+R+VLDEA TIK+ +TQ A+A L + RWCL+GTP+QN ++DLYS FL +P
Sbjct: 813 RIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLEDLYSLLCFLHVEP 872
Query: 569 YAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFI-DGQPIINLPPKTISLT 627
+ + + I+ P G K ++A+LR +MLRRTK T +G I+ LPP + +
Sbjct: 873 WCNWAWWSKLIQKPYENGDPRGLKLIKAILRPLMLRRTKETRDKEGSLILELPPTDVQVI 932
Query: 628 KVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV---- 683
+ + S+ E FY L S +F F G V NYANIL +LLRLRQ C+HP LV
Sbjct: 933 ECEQSEAERDFYTALFKRSKVQFDQFVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRA 992
Query: 684 --KEY-DFDSVGKI-----SGEMAKRLP-RDMLIDLLSRL-ETSSAICCVCSDPPEDSVV 733
++Y D DS+ + +++ P R + +++ L + +S C +C + +D V+
Sbjct: 993 DSQQYADLDSLARRFLDNNPDSVSQNAPSRAYIEEVIQDLRDGNSKECPICLESADDPVL 1052
Query: 734 TMCGHVFCYQCA-SEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSP 792
T C H C +C + + + +CP C+ + +T L +C PTDS
Sbjct: 1053 TPCAHRMCRECLLTSWRSPSCGLCPI--CR------TILKRTELISC--------PTDSI 1096
Query: 793 FADKSGILDNEYISSKIRTVLDIL 816
F + ++ N SSK+ +L L
Sbjct: 1097 F--RVDVVKNWKESSKVSELLKCL 1118
Score = 159 (61.0 bits), Expect = 1.3e-59, Sum P(5) = 1.3e-59
Identities = 31/61 (50%), Positives = 43/61 (70%)
Query: 386 GTLVVCPASVLRQWARELED-KVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVT 444
GTL++CP ++L QW ELE PD +SVL+Y+GG RT D +A +DVVLTTY ++T
Sbjct: 742 GTLIICPMALLSQWKDELETHSKPD--TVSVLVYYGGDRTHDAKAIASHDVVLTTYGVLT 799
Query: 445 N 445
+
Sbjct: 800 S 800
Score = 115 (45.5 bits), Expect = 1.3e-59, Sum P(5) = 1.3e-59
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDRE 903
KSIVFSQWT LDL+E L + ++ R DG ++ R++ +K+FN ++
Sbjct: 1129 KSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNETKQ 1178
Score = 74 (31.1 bits), Expect = 1.3e-59, Sum P(5) = 1.3e-59
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 287 LQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVL 332
+Q T + GGILAD GLGKT+ IALI + + +VL
Sbjct: 671 IQFPTATQMARGGILADAMGLGKTVMTIALILARPGRGNPENEDVL 716
Score = 51 (23.0 bits), Expect = 1.3e-59, Sum P(5) = 1.3e-59
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 253 ALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
A + N ++EA P L+ NL +QK AL WM + E
Sbjct: 597 AADSYNLEEMEA--PS-TLTCNLRPYQKQALYWMSESE 631
Score = 40 (19.1 bits), Expect = 7.8e-43, Sum P(3) = 7.8e-43
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 436 VLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKI 481
VL V + QPS ++ +++N + + + KR+K+
Sbjct: 250 VLEKKDEVIKVLEDQPSEINKKLEQENDDLFSSGDSDGTSAKRRKM 295
>MGI|MGI:1196437 [details] [associations]
symbol:Hltf "helicase-like transcription factor"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0008152 "metabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 UniPathway:UPA00143 MGI:MGI:1196437
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 GO:GO:0016568 GO:GO:0016887 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:6596 HOVERGEN:HBG079192 KO:K15711 OMA:SNWIDQF
EMBL:AF010138 EMBL:AF010600 EMBL:BC039796 EMBL:BC057116
EMBL:BC059240 IPI:IPI00315178 RefSeq:NP_033236.2 RefSeq:NP_659208.2
UniGene:Mm.209650 ProteinModelPortal:Q6PCN7 SMR:Q6PCN7
STRING:Q6PCN7 PhosphoSite:Q6PCN7 PRIDE:Q6PCN7
Ensembl:ENSMUST00000002502 GeneID:20585 KEGG:mmu:20585
UCSC:uc008osk.1 GeneTree:ENSGT00700000104586 HOGENOM:HOG000172619
InParanoid:Q6PCN7 OrthoDB:EOG47SSD6 NextBio:298877 Bgee:Q6PCN7
CleanEx:MM_HLTF Genevestigator:Q6PCN7 GermOnline:ENSMUSG00000002428
Uniprot:Q6PCN7
Length = 1003
Score = 441 (160.3 bits), Expect = 5.5e-58, Sum P(5) = 5.5e-58
Identities = 109/330 (33%), Positives = 170/330 (51%)
Query: 501 DYGC---GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDL 557
DYG PL + W RV+LDE I+N Q +A L A+RRW L+GTPIQNS+ DL
Sbjct: 531 DYGTKDDSPLHSIKWLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTGTPIQNSLKDL 590
Query: 558 YSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPII 617
+S FLK P+ + +Y I+ P++ G ++LQ++++ I LRRTK + I G+P++
Sbjct: 591 WSLLSFLKLKPFIDREWWYRIIQRPVTTGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVL 650
Query: 618 NLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQAC 677
LP + + + + S+EE Y+ ++++ + GTV +YA++L +LLRLRQ C
Sbjct: 651 ELPERKVFIQHITLSEEERKIYQSVKNEGKAAIGRYFTEGTVLAHYADVLGLLLRLRQIC 710
Query: 678 DHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAI--CCVCSDPPEDSVVTM 735
H L+ S G + + L R MLI+ + + +S + C +C D V+T
Sbjct: 711 CHTHLLTN-GMSSSGPSRSDTPEEL-RKMLIEKMKIILSSGSDEECAICLDSLTFPVITH 768
Query: 736 CGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFAD 795
C HVFC C + I + P C+ ++ D L C ++ DS D
Sbjct: 769 CAHVFCKPCICQVIHSEQPHAKCPLCRNEIHGD------NLLECPPEE---LACDS---D 816
Query: 796 KSGILDNEYISSKIRTVLDILHTQCELNTK 825
K ++ + SSKI ++H EL TK
Sbjct: 817 KESSMEWKS-SSKINA---LMHALIELRTK 842
Score = 133 (51.9 bits), Expect = 5.5e-58, Sum P(5) = 5.5e-58
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++CP SVL W + V + L+ +Y+G R +D L+K D++LTTY+I+T++
Sbjct: 472 TLIICPLSVLSNWIDQFGQHVKSEVHLNFYVYYGPDRIRDSAWLSKQDIILTTYNILTHD 531
Score = 85 (35.0 bits), Expect = 5.5e-58, Sum P(5) = 5.5e-58
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 853 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF-NTD 901
IKS+V SQ+T L L+E L + RLDG+M+ R +++ F NT+
Sbjct: 846 IKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQRFQNTE 895
Score = 78 (32.5 bits), Expect = 5.5e-58, Sum P(5) = 5.5e-58
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 287 LQKETRSLHCLGGILADDQGLGKTISIIALI 317
+++ ++H GGILADD GLGKT++ IA+I
Sbjct: 280 VKERPENVH--GGILADDMGLGKTLTAIAVI 308
Score = 64 (27.6 bits), Expect = 5.5e-58, Sum P(5) = 5.5e-58
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 250 YQAALEDLNQPKVEATL-PDGLLSVNLLKHQKIALAWMLQKE 290
+ EDL + + P + LL HQK ALAWM+ +E
Sbjct: 214 FDKLFEDLKEDDRTVEMEPAEAIETPLLPHQKQALAWMIARE 255
>UNIPROTKB|I3LM88 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016887 "ATPase activity" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:CU915669 EMBL:FP476099 Ensembl:ENSSSCT00000023239
Uniprot:I3LM88
Length = 1011
Score = 432 (157.1 bits), Expect = 1.1e-57, Sum P(5) = 1.1e-57
Identities = 92/272 (33%), Positives = 145/272 (53%)
Query: 501 DYGC---GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDL 557
DYG PL + W RV+LDE I+N Q +A L A+RRW L+GTPIQNS+ DL
Sbjct: 539 DYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDL 598
Query: 558 YSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPII 617
+S FLK P+ + ++ TI+ P++ G ++LQ++++ I LRRTK + I G+P++
Sbjct: 599 WSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVL 658
Query: 618 NLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQAC 677
LP + + + + S EE Y+ +++D + + GTV +YA++L +LLRLRQ C
Sbjct: 659 ELPERKVFIQHITLSDEERKIYQSVKNDGRATIGRYFNEGTVLAHYADVLGLLLRLRQIC 718
Query: 678 DHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSS-AICCVCSDPPEDSVVTMC 736
H L+ S G + + L + ++ + L + S C +C D V+T C
Sbjct: 719 CHTHLLTNA-VSSSGPSGNDTPEELRKKLIKKMKLILSSGSDEECAICLDSLTVPVITHC 777
Query: 737 GHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 768
HVFC C + I + P C+ + D
Sbjct: 778 AHVFCKPCICQVIQNEQPHAKCPLCRNDIHGD 809
Score = 140 (54.3 bits), Expect = 1.1e-57, Sum P(5) = 1.1e-57
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++CP SVL W + + L+ +Y+G R +DP L+K D+VLTTY+I+T++
Sbjct: 480 TLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRVRDPALLSKQDIVLTTYNILTHD 539
Score = 84 (34.6 bits), Expect = 1.1e-57, Sum P(5) = 1.1e-57
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 853 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF-NTD 901
IKS+V SQ+T L L+E L + RLDG+M+ R +++ F NT+
Sbjct: 854 IKSLVVSQFTTFLSLIETPLRASGFVFTRLDGSMAQKKRVESIQCFQNTE 903
Score = 77 (32.2 bits), Expect = 1.1e-57, Sum P(5) = 1.1e-57
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 298 GGILADDQGLGKTISIIALI 317
GGILADD GLGKT++ IA+I
Sbjct: 289 GGILADDMGLGKTLTAIAVI 308
Score = 67 (28.6 bits), Expect = 1.1e-57, Sum P(5) = 1.1e-57
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 250 YQAALEDLNQP-KVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
+ EDL + K P + LL HQK ALAWM+ +E
Sbjct: 214 FDKLFEDLKEDDKTHEMEPAEAVETPLLPHQKQALAWMVSRE 255
Score = 45 (20.9 bits), Expect = 1.2e-10, Sum P(5) = 1.2e-10
Identities = 18/92 (19%), Positives = 35/92 (38%)
Query: 611 IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL-M 669
I G ++ PP+ ++ S EW K+ + A D N N ++++
Sbjct: 806 IHGDNLLECPPEELACDTEKKSNMEWTSSSKINA----LMHALIDLRKKNPNIKSLVVSQ 861
Query: 670 LLRLRQACDHPLLVKEYDFDSVGKISGEMAKR 701
+ PL + F ++ G MA++
Sbjct: 862 FTTFLSLIETPLRASGFVFT---RLDGSMAQK 890
Score = 40 (19.1 bits), Expect = 1.8e-14, Sum P(5) = 1.8e-14
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 580 KIPISRNSLHGYKKLQ 595
K P+ RN +HG L+
Sbjct: 798 KCPLCRNDIHGDNLLE 813
>UNIPROTKB|F1MLM2 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016887 "ATPase activity" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:DAAA02002705 EMBL:DAAA02002706 IPI:IPI00883352
Ensembl:ENSBTAT00000034508 Uniprot:F1MLM2
Length = 1009
Score = 429 (156.1 bits), Expect = 1.3e-57, Sum P(5) = 1.3e-57
Identities = 91/272 (33%), Positives = 145/272 (53%)
Query: 501 DYGC---GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDL 557
DYG PL + W RV+LDE I+N Q +A L A+RRW L+GTPIQNS+ DL
Sbjct: 537 DYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDL 596
Query: 558 YSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPII 617
+S FLK P+ + ++ TI+ P++ G ++LQ++++ I LRRTK + I G+P++
Sbjct: 597 WSLLSFLKLKPFVDREWWHRTIQRPVTMGDEAGLRRLQSLIKNITLRRTKTSKIKGKPVL 656
Query: 618 NLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQAC 677
LP + + + + S EE Y+ ++++ + + GTV +YA++L +LLRLRQ C
Sbjct: 657 ELPERKVFIQHITLSDEERKIYQSVKNEGKATIGRYFNEGTVLAHYADVLGLLLRLRQIC 716
Query: 678 DHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSS-AICCVCSDPPEDSVVTMC 736
H L+ S G + + L + ++ + L + S C +C D V+T C
Sbjct: 717 CHTHLLANA-VSSSGPSGNDTPEELRKKLIKKMKLILSSGSDEECAICLDSLMAPVITHC 775
Query: 737 GHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 768
HVFC C + I + P C+ + D
Sbjct: 776 AHVFCKPCICQVIQNEQPHAKCPLCRNDIHGD 807
Score = 140 (54.3 bits), Expect = 1.3e-57, Sum P(5) = 1.3e-57
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++CP SVL W + + L+ +Y+G R +DP L+K D+VLTTY+I+T++
Sbjct: 478 TLIICPLSVLSNWMDQFGQHIKSDVHLNFYVYYGPDRVRDPTLLSKQDIVLTTYNILTHD 537
Score = 84 (34.6 bits), Expect = 1.3e-57, Sum P(5) = 1.3e-57
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 853 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF-NTD 901
IKS+V SQ+T L L+E L + RLDG+M+ R +++ F NT+
Sbjct: 852 IKSLVVSQFTTFLSLIETPLRASGFVFTRLDGSMAQKKRVESIQCFQNTE 901
Score = 77 (32.2 bits), Expect = 1.3e-57, Sum P(5) = 1.3e-57
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 298 GGILADDQGLGKTISIIALI 317
GGILADD GLGKT++ IA+I
Sbjct: 289 GGILADDMGLGKTLTAIAVI 308
Score = 70 (29.7 bits), Expect = 1.3e-57, Sum P(5) = 1.3e-57
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 250 YQAALEDLNQP-KVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
+ EDL + K + P + LL HQK ALAWM+ +E
Sbjct: 214 FDKLFEDLKEDDKTQEMEPAEAIETPLLPHQKQALAWMVSRE 255
Score = 49 (22.3 bits), Expect = 2.6e-11, Sum P(4) = 2.6e-11
Identities = 19/92 (20%), Positives = 35/92 (38%)
Query: 611 IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL-M 669
I G +I PP+ ++ S EW K+ + A D N N ++++
Sbjct: 804 IHGDSLIECPPEELACNTEKKSNMEWTSSSKINA----LMHALIDLRKKNPNIKSLVVSQ 859
Query: 670 LLRLRQACDHPLLVKEYDFDSVGKISGEMAKR 701
+ PL + F ++ G MA++
Sbjct: 860 FTTFLSLIETPLRASGFVFT---RLDGSMAQK 888
>UNIPROTKB|E2R9I5 [details] [associations]
symbol:HLTF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0016887 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:6596 KO:K15711 OMA:SNWIDQF GeneTree:ENSGT00700000104586
EMBL:AAEX03013671 RefSeq:XP_534300.3 Ensembl:ENSCAFT00000013176
GeneID:477106 KEGG:cfa:477106 Uniprot:E2R9I5
Length = 1007
Score = 430 (156.4 bits), Expect = 1.9e-57, Sum P(5) = 1.9e-57
Identities = 98/276 (35%), Positives = 148/276 (53%)
Query: 501 DYGC---GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDL 557
DYG PL + W RV+LDE I+N Q +A L A+RRW L+GTPIQNS+ DL
Sbjct: 535 DYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDL 594
Query: 558 YSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPII 617
+S FLK P+ + ++ TI+ P++ G ++LQ++++ I LRRTK + I G+P++
Sbjct: 595 WSLLSFLKLKPFLDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVL 654
Query: 618 NLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQAC 677
LP + + + + S EE Y+ ++++ + + GTV +YA++L +LLRLRQ C
Sbjct: 655 ELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQIC 714
Query: 678 DHPLLVKEYDFDSVGKISG-----EMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSV 732
H L+ S G SG E+ K+L R M + L S S C +C D V
Sbjct: 715 CHTHLLTNAGSSS-GP-SGNDTPEELRKKLIRKMKLILSSG---SDEECAICLDSLTVPV 769
Query: 733 VTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 768
+T C HVFC C + I + P C+ + D
Sbjct: 770 ITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHGD 805
Score = 139 (54.0 bits), Expect = 1.9e-57, Sum P(5) = 1.9e-57
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++CP SVL W + + L+ +Y+G R +DP L+K D+VLTTY+I+T++
Sbjct: 476 TLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIRDPALLSKQDIVLTTYNILTHD 535
Score = 84 (34.6 bits), Expect = 1.9e-57, Sum P(5) = 1.9e-57
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 853 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF-NTD 901
IKS+V SQ+T L L+E L + RLDG+M+ R +++ F NT+
Sbjct: 850 IKSLVVSQFTTFLSLIETPLRASGFVFTRLDGSMAQKKRVESIQCFQNTE 899
Score = 77 (32.2 bits), Expect = 1.9e-57, Sum P(5) = 1.9e-57
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 298 GGILADDQGLGKTISIIALI 317
GGILADD GLGKT++ IA+I
Sbjct: 289 GGILADDMGLGKTLTAIAVI 308
Score = 68 (29.0 bits), Expect = 1.9e-57, Sum P(5) = 1.9e-57
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 250 YQAALEDLNQP-KVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
+ EDL + K P + LL HQK ALAWM+ +E
Sbjct: 214 FDKLFEDLKEDDKTHEMEPAEAIETPLLPHQKQALAWMVSRE 255
Score = 46 (21.3 bits), Expect = 9.4e-11, Sum P(5) = 9.4e-11
Identities = 18/92 (19%), Positives = 35/92 (38%)
Query: 611 IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL-M 669
I G ++ PP+ ++ S EW K+ + A D N N ++++
Sbjct: 802 IHGDNLLECPPEELACDTEKKSNTEWTSSSKINA----LMHALIDLRKKNPNIKSLVVSQ 857
Query: 670 LLRLRQACDHPLLVKEYDFDSVGKISGEMAKR 701
+ PL + F ++ G MA++
Sbjct: 858 FTTFLSLIETPLRASGFVFT---RLDGSMAQK 886
Score = 40 (19.1 bits), Expect = 1.8e-14, Sum P(5) = 1.8e-14
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 580 KIPISRNSLHGYKKLQ 595
K P+ RN +HG L+
Sbjct: 794 KCPLCRNDIHGDNLLE 809
>UNIPROTKB|Q14527 [details] [associations]
symbol:HLTF "Helicase-like transcription factor"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016874 "ligase activity" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
UniPathway:UPA00143 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0016874
EMBL:CH471052 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 GO:GO:0016887 GO:GO:0016567 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:L34673
EMBL:Z46606 EMBL:AJ418064 EMBL:BC044659 EMBL:S64671 IPI:IPI00339381
IPI:IPI00759790 PIR:S49618 RefSeq:NP_003062.2 RefSeq:NP_620636.1
UniGene:Hs.3068 PDB:2L1I PDBsum:2L1I ProteinModelPortal:Q14527
SMR:Q14527 DIP:DIP-29828N IntAct:Q14527 MINT:MINT-1639589
STRING:Q14527 PhosphoSite:Q14527 DMDM:60390864 PaxDb:Q14527
PRIDE:Q14527 DNASU:6596 Ensembl:ENST00000310053
Ensembl:ENST00000392912 Ensembl:ENST00000465259
Ensembl:ENST00000494055 GeneID:6596 KEGG:hsa:6596 UCSC:uc003ewq.1
CTD:6596 GeneCards:GC03M148747 H-InvDB:HIX0024319 HGNC:HGNC:11099
HPA:HPA015284 MIM:603257 neXtProt:NX_Q14527 PharmGKB:PA35949
HOVERGEN:HBG079192 InParanoid:Q14527 KO:K15711 OMA:SNWIDQF
PhylomeDB:Q14527 GenomeRNAi:6596 NextBio:25655 ArrayExpress:Q14527
Bgee:Q14527 CleanEx:HS_HLTF Genevestigator:Q14527
GermOnline:ENSG00000071794 Uniprot:Q14527
Length = 1009
Score = 427 (155.4 bits), Expect = 2.4e-56, Sum P(5) = 2.4e-56
Identities = 97/276 (35%), Positives = 148/276 (53%)
Query: 501 DYGC---GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDL 557
DYG PL + W RV+LDE I+N Q +A L ++RRW L+GTPIQNS+ DL
Sbjct: 537 DYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDL 596
Query: 558 YSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPII 617
+S FLK P+ + ++ TI+ P++ G ++LQ++++ I LRRTK + I G+P++
Sbjct: 597 WSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVL 656
Query: 618 NLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQAC 677
LP + + + + S EE Y+ ++++ + + GTV +YA++L +LLRLRQ C
Sbjct: 657 ELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQIC 716
Query: 678 DHPLLVKEYDFDSVGKISG-----EMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSV 732
H L+ S G SG E+ K+L R M + L S S C +C D V
Sbjct: 717 CHTYLLTNA-VSSNGP-SGNDTPEELRKKLIRKMKLILSSG---SDEECAICLDSLTVPV 771
Query: 733 VTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 768
+T C HVFC C + I + P C+ + D
Sbjct: 772 ITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHED 807
Score = 135 (52.6 bits), Expect = 2.4e-56, Sum P(5) = 2.4e-56
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++CP SVL W + + L+ +Y+G R ++P L+K D+VLTTY+I+T++
Sbjct: 478 TLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILTHD 537
Score = 81 (33.6 bits), Expect = 2.4e-56, Sum P(5) = 2.4e-56
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 853 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF-NTD 901
IKS+V SQ+T L L+E L + RLDG+M+ R +++ F NT+
Sbjct: 852 IKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNTE 901
Score = 77 (32.2 bits), Expect = 2.4e-56, Sum P(5) = 2.4e-56
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 298 GGILADDQGLGKTISIIALI 317
GGILADD GLGKT++ IA+I
Sbjct: 289 GGILADDMGLGKTLTAIAVI 308
Score = 68 (29.0 bits), Expect = 2.4e-56, Sum P(5) = 2.4e-56
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 250 YQAALEDLNQP-KVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
+ EDL + K P + LL HQK ALAWM+ +E
Sbjct: 214 FDKLFEDLKEDDKTHEMEPAEAIETPLLPHQKQALAWMVSRE 255
Score = 41 (19.5 bits), Expect = 1.1e-46, Sum P(5) = 1.1e-46
Identities = 14/71 (19%), Positives = 36/71 (50%)
Query: 412 ALSVLI--YHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLS 469
A++V++ +H G P+E K +++ Y++ + + + E+AD + + S
Sbjct: 304 AIAVILTNFHDGRPL--PIERVKKNLLKKEYNVNDDSMKLGGNNTSEKADGLSKDASRCS 361
Query: 470 SEFSVNKKRKK 480
+ S++ ++K
Sbjct: 362 EQPSISDIKEK 372
>DICTYBASE|DDB_G0272082 [details] [associations]
symbol:DDB_G0272082 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 dictyBase:DDB_G0272082
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AAFI02000007 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_001732968.1 EnsemblProtists:DDB0233429 GeneID:8618298
KEGG:ddi:DDB_G0272082 Uniprot:B0G105
Length = 1838
Score = 373 (136.4 bits), Expect = 1.5e-55, Sum P(6) = 1.5e-55
Identities = 76/176 (43%), Positives = 110/176 (62%)
Query: 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPY 569
V WFRVVLDEA TIK T+ ++A +L + RWC++GTPIQN +DDL+S FL+ +P+
Sbjct: 1120 VKWFRVVLDEAHTIKERSTRTSKATYALESIIRWCVTGTPIQNKLDDLFSLLHFLRVEPF 1179
Query: 570 AVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKV 629
Y + I P G+ +L+ +L I+LRR K I+ PI+ LP +TI + +
Sbjct: 1180 HNYSWWNQYILKPSKLKDDIGFSRLRVLLSKILLRRLKDQKINNTPILKLPDRTIMIKRD 1239
Query: 630 DFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKE 685
FS+EE Y+ L + KF +G++ +NYA++L MLLRLRQ CDHP LV++
Sbjct: 1240 IFSEEEEQIYQDLWKTAKTKFNNLFQSGSLLKNYAHVLEMLLRLRQVCDHPYLVQK 1295
Score = 137 (53.3 bits), Expect = 1.5e-55, Sum P(6) = 1.5e-55
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL+VCP SVL+QW E+ + +L+V IYHG +R +D L K+D++LTTY+ + E
Sbjct: 944 TLIVCPVSVLQQWHSEIINNT--NPSLNVYIYHGPNRNRDRSFLMKHDIILTTYTTLVAE 1001
Score = 111 (44.1 bits), Expect = 1.5e-55, Sum P(6) = 1.5e-55
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
K ++FSQWT MLDL+E LN + Q+ RLDG + R+ A+K F + V
Sbjct: 1690 KCLIFSQWTSMLDLLEYPLNLNQFQFVRLDGKIPQKQREVAIKRFKEEPNV 1740
Score = 81 (33.6 bits), Expect = 1.5e-55, Sum P(6) = 1.5e-55
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 721 CCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCP 757
C +C + E+ +T CGH FC C + + D + P
Sbjct: 1369 CTICMETLENPSITTCGHFFCTLCIQKNLIADTKLVP 1405
Score = 76 (31.8 bits), Expect = 1.5e-55, Sum P(6) = 1.5e-55
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 298 GGILADDQGLGKTISIIALIQMQRS 322
GG+L DD G+GKTI IIA I +S
Sbjct: 884 GGLLCDDMGMGKTIEIIATILANKS 908
Score = 72 (30.4 bits), Expect = 1.5e-55, Sum P(6) = 1.5e-55
Identities = 37/188 (19%), Positives = 82/188 (43%)
Query: 78 QEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASA-DYEKISSQQA 136
Q++ Q H S+ + H+ SG+ V T P + ++ + + IS +
Sbjct: 409 QQQQQQQSNSHHHHNHSSNHHYNHHHSSGSNLVSPSPTTYPHYISSSTVWNQQYISFFSS 468
Query: 137 LKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYI-RDYYVKK 195
+ A S N + ++ NMN++ +++F ++ L PS N ++ + ++K
Sbjct: 469 SSASSSASVNIKSTNNNNNNNNNNMNNTISKESFIGSFILNVPSFENYSEFLNKQNLIEK 528
Query: 196 NDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALE 255
+ ++ Y G + + H K + + PS + + +E +G ++ L + + L
Sbjct: 529 INILVIRY-GCNVSLRFIAHLKQQDI-EMEKPSFNSNTYSNGNELVLG-EKSLSWLSILL 585
Query: 256 DLNQPKVE 263
+ N +VE
Sbjct: 586 EKNYIQVE 593
Score = 43 (20.2 bits), Expect = 1.8e-44, Sum P(5) = 1.8e-44
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 833 DLAGSNGSSAVHSKSPIEGPIKSIVF--SQWTRMLDLVENSLNQHCIQY 879
D A +N ++++ S + + I++ + S W+ LD + NS H Q+
Sbjct: 1303 DAADNNDNNSLDSDNDDKNKIQNNLNHESDWSTFLDFI-NSKPNHYNQF 1350
Score = 40 (19.1 bits), Expect = 1.1e-48, Sum P(5) = 1.1e-48
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 93 MSNGQADDSHYLSGNKNVGQLQTVN 117
+ N ++++Y + N N Q+Q N
Sbjct: 918 IENNNNNNNNYNNNNNNTNQVQQSN 942
Score = 39 (18.8 bits), Expect = 2.9e-51, Sum P(6) = 2.9e-51
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 781 SDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQ 819
+D+ + DS DK+ I +N S T LD ++++
Sbjct: 1305 ADNNDNNSLDSDNDDKNKIQNNLNHESDWSTFLDFINSK 1343
Score = 38 (18.4 bits), Expect = 1.0e-06, Sum P(4) = 1.0e-06
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 620 PPKTISLTKVDFSKEEWAFYKK-LESDSLKKFKAFADAGTVNQNYAN 665
P + ISL +D SK+ +F K L D + K T+ N +N
Sbjct: 864 PEEIISLVDLDGSKD-LSFVKGGLLCDDMGMGKTIEIIATILANKSN 909
Score = 37 (18.1 bits), Expect = 5.6e-52, Sum P(6) = 5.6e-52
Identities = 15/64 (23%), Positives = 25/64 (39%)
Query: 94 SNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLNTK 153
+N ++S+ S N N N N S + ISS+ + P Q +
Sbjct: 198 NNNNNNNSNNSSNNNNNNNNNNNNNNNNNNNSC-FNAISSKSMFESQQPQQQQTQQTRSP 256
Query: 154 SKSS 157
++SS
Sbjct: 257 TRSS 260
>CGD|CAL0000717 [details] [associations]
symbol:orf19.5675 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0032183 "SUMO binding" evidence=IEA] [GO:0006333 "chromatin
assembly or disassembly" evidence=IEA] [GO:0007533 "mating type
switching" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 CGD:CAL0000717
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000129
EMBL:AACQ01000128 RefSeq:XP_713356.1 RefSeq:XP_713403.1
ProteinModelPortal:Q59UP5 GeneID:3644990 GeneID:3645010
KEGG:cal:CaO19.13120 KEGG:cal:CaO19.5675 Uniprot:Q59UP5
Length = 1102
Score = 341 (125.1 bits), Expect = 3.8e-55, Sum P(6) = 3.8e-55
Identities = 88/207 (42%), Positives = 119/207 (57%)
Query: 514 RVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYK 573
R++LDEAQ IKN + ++A LRA+ R+CL+GTP+QN I++LY RFLK PY +
Sbjct: 575 RIILDEAQAIKNKQALASKAMTYLRAQYRFCLTGTPMQNGIEELYPLLRFLKIQPYCSEE 634
Query: 574 SFYSTIKIPI-SRNSLHG-Y------KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
F + I PI S+ L+ Y KK+Q +L++I+LRRTK + IDG PI+NLP K +
Sbjct: 635 KFRADILTPIKSKTDLYDEYDVKESMKKIQVLLKSILLRRTKDSLIDGVPILNLPEKHVL 694
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK- 684
V +E A+Y+ +ES K K T N A L +LLRLRQAC H LV+
Sbjct: 695 SDYVTLENDELAYYQSIESRVQKAAKKILGEHTKN---APALTLLLRLRQACCHSYLVEI 751
Query: 685 -EYDF---DSVGKISGEMAKRLPRDML 707
EY DS + S +K R ML
Sbjct: 752 GEYRAKVKDSEAEASASNSKLDWRSML 778
Score = 142 (55.0 bits), Expect = 3.8e-55, Sum P(6) = 3.8e-55
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 255 EDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISII 314
EDL + +E T P+ L VNLLKHQ++ L WM + E GGILADD GLGKTI +
Sbjct: 408 EDLEEG-LEPTPPE--LKVNLLKHQRMGLTWMKRMEASKAK--GGILADDMGLGKTIQTL 462
Query: 315 ALIQMQR 321
AL+ + +
Sbjct: 463 ALMMVSK 469
Score = 138 (53.6 bits), Expect = 3.8e-55, Sum P(6) = 3.8e-55
Identities = 33/78 (42%), Positives = 44/78 (56%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVELAK-YDVVLTTYSIVTN 445
L+V P S+LRQW E+E K LSV IYHG + K +L K YD+VL +Y+ +
Sbjct: 473 LIVAPVSLLRQWVAEIESKTKSDVFLSVGIYHGDDKKKMKDFDLMKEYDIVLVSYTTLVQ 532
Query: 446 EVPKQPSVD-EEEADEKN 462
E K S D +E E+N
Sbjct: 533 EWKKHFSEDLKEHQHERN 550
Score = 105 (42.0 bits), Expect = 3.8e-55, Sum P(6) = 3.8e-55
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 845 SKSPIEGPIKSIVFSQWTRMLDLVENSL-NQHCIQYRRLDGTMSLPARDRAVKDF 898
SK+P E K IVFSQ+T + DL+ L NQH I++ R DGTMS+ ++ +K+F
Sbjct: 940 SKNPGE---KVIVFSQFTSLFDLMALVLQNQH-IEFLRYDGTMSMDVKNNVIKEF 990
Score = 56 (24.8 bits), Expect = 3.8e-55, Sum P(6) = 3.8e-55
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 714 LETSSAICCVCSD--PPEDSVVTM--CGHVFCYQCASEYI----TGDDN 754
+E + A C VC D E S++ CGH+ C C + + GDD+
Sbjct: 805 IENTPA-CPVCFDNIDIESSLLIFGECGHIICKGCCNTFFENCNAGDDD 852
Score = 49 (22.3 bits), Expect = 3.8e-55, Sum P(6) = 3.8e-55
Identities = 30/104 (28%), Positives = 40/104 (38%)
Query: 97 QADDSHYLSGNKN-VGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLNTKSK 155
QA D H KN + VN AN S Q +K+ P HS NT
Sbjct: 42 QATDQHEY---KNPFPTISAVNSASANTLPLR-PSFSHQPPIKK--PRLESLHSRNTSPF 95
Query: 156 SSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDD 199
S N+N++ + N LA P T + I + +DDD
Sbjct: 96 SLNHNINNNNM-----NPQLLARPIT-KPREPIEVIALSDSDDD 133
>RGD|1309031 [details] [associations]
symbol:Hltf "helicase-like transcription factor" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 RGD:1309031 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0016887 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 IPI:IPI00372747
Ensembl:ENSRNOT00000000095 UCSC:RGD:1309031 ArrayExpress:F1LT77
Uniprot:F1LT77
Length = 1004
Score = 411 (149.7 bits), Expect = 5.8e-55, Sum P(5) = 5.8e-55
Identities = 95/289 (32%), Positives = 152/289 (52%)
Query: 501 DYGC---GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDL 557
DYG PL + W RV+LDE I+N Q +A L A+RRW L+GTPIQNS+ DL
Sbjct: 532 DYGTKDNSPLHSIKWLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTGTPIQNSLKDL 591
Query: 558 YSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPII 617
+S FLK P+ + ++ I+ P++ G ++LQ+++++I LRRTK + I G+P++
Sbjct: 592 WSLLSFLKLKPFTDREWWHRIIQRPVTTGDEGGLRRLQSLIKSITLRRTKTSKIKGKPVL 651
Query: 618 NLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQAC 677
LP + + + + S EE Y+ ++++ + GTV +YA++L +LLRLRQ C
Sbjct: 652 ELPERKVFIQHITLSVEERKIYQSVKNEGKATIARYFTEGTVLAHYADVLGLLLRLRQIC 711
Query: 678 DHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAI--CCVCSDPPEDSVVTM 735
H L S S + + L R ML+ + + +S + C +C D V+T
Sbjct: 712 CHVHLPTNGTSSSDPSRS-DTPEEL-RKMLVTKMKLILSSGSDEECSICLDSLTFPVITH 769
Query: 736 CGHVFCYQCASEYITGDDNMCPAPRCKEQL-GADVVFSKTTLKNCVSDD 783
C HVFC C + I + P C+ + G +++ C SD+
Sbjct: 770 CAHVFCKPCICQVIQREQPHAKCPLCRSNIHGHNLLECPPEELACDSDN 818
Score = 136 (52.9 bits), Expect = 5.8e-55, Sum P(5) = 5.8e-55
Identities = 22/60 (36%), Positives = 40/60 (66%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++CP SVL W ++ + + L++ +Y+G R +D L+K D++LTTY+I+T++
Sbjct: 473 TLIICPLSVLSNWIDQIGQHIKSEVDLNLYVYYGPDRIRDSTWLSKQDIILTTYNILTHD 532
Score = 88 (36.0 bits), Expect = 5.8e-55, Sum P(5) = 5.8e-55
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 853 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF-NTD 901
IKS+V SQ+T L L+E L + RLDG+M+ R +++ F NTD
Sbjct: 847 IKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQCFQNTD 896
Score = 78 (32.5 bits), Expect = 5.8e-55, Sum P(5) = 5.8e-55
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 287 LQKETRSLHCLGGILADDQGLGKTISIIALI 317
+++ ++H GGILADD GLGKT++ IA+I
Sbjct: 279 VKERPENVH--GGILADDMGLGKTLTAIAVI 307
Score = 64 (27.6 bits), Expect = 5.8e-55, Sum P(5) = 5.8e-55
Identities = 24/94 (25%), Positives = 39/94 (41%)
Query: 199 DIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAY-RSGSADERAVGGDERLIYQAALEDL 257
D + G ++ P+ G S+ T G + +Y R + + + EDL
Sbjct: 161 DHLKKHGFKLGPTPKTVGSSLENTWGSGRAGPSYSRPVHVAVQMTTEQLKTEFDKLFEDL 220
Query: 258 NQPKVEATL-PDGLLSVNLLKHQKIALAWMLQKE 290
+ + P + LL HQK ALAWM+ +E
Sbjct: 221 KEDDRTIEMEPAEAVETPLLPHQKQALAWMIARE 254
Score = 51 (23.0 bits), Expect = 1.3e-10, Sum P(4) = 1.3e-10
Identities = 31/176 (17%), Positives = 67/176 (38%)
Query: 611 IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL-M 669
I G ++ PP+ ++ + S EW K+ + A + T + N ++++
Sbjct: 799 IHGHNLLECPPEELACDSDNKSDMEWTSSSKINA----LMNALIELRTKDPNIKSLVVSQ 854
Query: 670 LLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPE 729
+ PL + F ++ G MA++ R I + S + S
Sbjct: 855 FTTFLSLIETPLKASGFVFT---RLDGSMAQK-KRVESIQCFQNTDAGSPTIMLLSLKAG 910
Query: 730 DSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA--DVVFSKTTLKNCVSDD 783
+ +C + + ++ C RC +LG +V+ +K +K+ V ++
Sbjct: 911 GVGLNLCAASRVFLMDPAWNPAAEDQC-FDRC-HRLGQKQEVIITKFIVKDSVEEN 964
>SGD|S000005717 [details] [associations]
symbol:ULS1 "Protein involved in proteolytic control of
sumoylated substrates" species:4932 "Saccharomyces cerevisiae"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0007533 "mating type switching" evidence=IMP]
[GO:0006333 "chromatin assembly or disassembly"
evidence=IGI;IMP;IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0032183 "SUMO binding" evidence=IPI] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SGD:S000005717
Prosite:PS00518 GO:GO:0005739 GO:GO:0005524 GO:GO:0005730
EMBL:BK006948 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008094 GO:GO:0007533 GeneTree:ENSGT00700000104545
EMBL:Z75099 PIR:S67083 RefSeq:NP_014834.1 ProteinModelPortal:Q08562
SMR:Q08562 DIP:DIP-996N IntAct:Q08562 MINT:MINT-426553
STRING:Q08562 PaxDb:Q08562 EnsemblFungi:YOR191W GeneID:854363
KEGG:sce:YOR191W CYGD:YOR191w HOGENOM:HOG000065999 OMA:NENMNMS
OrthoDB:EOG4NZZ2M NextBio:976476 Genevestigator:Q08562
GermOnline:YOR191W Uniprot:Q08562
Length = 1619
Score = 406 (148.0 bits), Expect = 8.3e-54, Sum P(3) = 8.3e-54
Identities = 134/422 (31%), Positives = 205/422 (48%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAV 571
++R++LDE Q IKN T+ ++ACC++ RW LSGTPIQNS+D+LYS RFL+ PY
Sbjct: 1102 FYRILLDEGQNIKNKNTRASKACCTINGMYRWVLSGTPIQNSMDELYSLIRFLRIPPYHK 1161
Query: 572 YKSFYSTIKIPISRNSLHGY---------KKLQAVLRAIMLRRTKGTFIDGQPIINLPPK 622
+ F I RN + Y +K++ +L AIMLRR+K IDG+P++ LPPK
Sbjct: 1162 EQRFKLDIGRFFQRNKQYQYDNEDRKNALRKVRVLLNAIMLRRSKADKIDGKPLLELPPK 1221
Query: 623 TISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ + + EE FY LES + K + T +Y+++L +LLRLRQAC H L
Sbjct: 1222 IVEVDESRLKGEELKFYTALESKNQALAKKLLNNST-RGSYSSVLTLLLRLRQACCHSEL 1280
Query: 683 V----KEYDFDSV--GKISGEMAKRLP---RDMLIDLLSRLETS--SAICCVCSDP--PE 729
V K+ + V GK + RL M + +++ TS S C C + PE
Sbjct: 1281 VVMGEKKAEGTKVANGKSFEDDWLRLYYKITHMSGEAQAQVITSMNSMTCFWCMEQLEPE 1340
Query: 730 D-SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSK-----TTLKNCVSDD 783
SV+T CGH+ C C +I + +M P + K + GA + K T K+ VS
Sbjct: 1341 AMSVLTGCGHLICDTCIEPFIE-ESSMLPQAK-KTKGGAFAIPCKDCQRLTNEKDIVSHK 1398
Query: 784 GGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQC-ELNTKCSIVEIHDLAGSNGSSA 842
+ F ++ L EY+S + + + + +I
Sbjct: 1399 LYDQVINQGFTEED--LHAEYLSEMEKQKIQQKNVYVPNFESLEPSTKIEQCI--QVIQR 1454
Query: 843 VHSKSPIEGPIKSIVFSQWTRMLDLVENSL-NQHCIQYRRLDGTMSLPARDRAVKDFNTD 901
V +S E K I+FSQ+T +++E+ L N+ Y + G+M+ R + +F D
Sbjct: 1455 VFDESATE---KIIIFSQFTTFFEILEHFLKNKLNFPYLKYIGSMNAQRRSDVINEFYRD 1511
Query: 902 RE 903
E
Sbjct: 1512 PE 1513
Score = 168 (64.2 bits), Expect = 8.3e-54, Sum P(3) = 8.3e-54
Identities = 42/92 (45%), Positives = 59/92 (64%)
Query: 245 DERLIYQAALEDLNQPKV----EATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGI 300
D+ I +A LE++ Q + EA P+ + +VNLLKHQ++ L W+LQ E + GG+
Sbjct: 911 DQEQI-RALLENVKQSESIIDGEALTPEDM-TVNLLKHQRLGLHWLLQVENSAKK--GGL 966
Query: 301 LADDQGLGKTISIIALIQMQRSLQSKSKTEVL 332
LADD GLGKTI IAL+ RS +SK KT ++
Sbjct: 967 LADDMGLGKTIQAIALMLANRSEESKCKTNLI 998
Score = 123 (48.4 bits), Expect = 8.3e-54, Sum P(3) = 8.3e-54
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS---RTKDPVELAKYDVVLTTYSIVT 444
L+V P SVLR W ELE KV +A + I+ GGS + K +LA+YD VL +Y +
Sbjct: 997 LIVAPVSVLRVWKGELETKVKKRAKFTTFIF-GGSGNGKVKHWRDLARYDAVLVSYQTLA 1055
Query: 445 NEVPKQ-PS-VDEEE 457
NE K P +D E+
Sbjct: 1056 NEFKKHWPKKLDGEQ 1070
Score = 38 (18.4 bits), Expect = 3.0e-40, Sum P(3) = 3.0e-40
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 304 DQGLGK-TISIIALIQMQRSLQSKSKTEVLGNQKT 337
DQ L + T+S Q+ +Q K LG+Q+T
Sbjct: 625 DQMLKEGTLSFSTYKQLTGEIQQKLNDLKLGDQRT 659
>UNIPROTKB|E1C366 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 EMBL:AADN02032807 IPI:IPI00602086
Ensembl:ENSGALT00000024603 Uniprot:E1C366
Length = 1150
Score = 293 (108.2 bits), Expect = 3.5e-52, Sum P(6) = 3.5e-52
Identities = 59/151 (39%), Positives = 92/151 (60%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C PL +V W RV+LDEA TIKN + Q + A C LRA RW ++GTPIQN++ D+YS RF
Sbjct: 709 CSPLLRVAWARVILDEAHTIKNPKVQTSIAVCKLRASARWAVTGTPIQNNLLDMYSLLRF 768
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFID-GQPIINLPPK 622
L+ P+ YK + K + N+ G +L + R+++LRRTK G+P+++LP +
Sbjct: 769 LRCSPFDEYKVW----KYQVDNNTKKGGDRLSLLTRSLLLRRTKDQLDSTGKPLVSLPQR 824
Query: 623 TISLTKVDFSKEEWAFYKKLESDSLKKFKAF 653
++ L ++ S EE + Y L + S +++
Sbjct: 825 SMQLHQLKLSAEEQSVYNVLFARSRSTLQSY 855
Score = 168 (64.2 bits), Expect = 3.5e-52, Sum P(6) = 3.5e-52
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 383 PAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442
P+ TL++CPAS++ W +E++ +V L V +YHG +R K L++YD+V+TTYS+
Sbjct: 623 PSCSTLIICPASLIHHWKKEIDRRV-SFGKLRVYLYHGPNREKHAEVLSEYDIVVTTYSL 681
Query: 443 VTNEVPKQPSVDEEEADEKNGETYGLSSEFS 473
++ EVP S +E E K+ E SS S
Sbjct: 682 LSKEVPT--SKEEGEFPAKDHEVGSGSSACS 710
Score = 149 (57.5 bits), Expect = 3.5e-52, Sum P(6) = 3.5e-52
Identities = 41/86 (47%), Positives = 55/86 (63%)
Query: 253 ALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTIS 312
+LE + A P GL V LL HQ+ ALAW+L +E++ C GGILADD GLGKT++
Sbjct: 534 SLESCPTEQAVAEDPSGL-KVPLLLHQRQALAWLLWRESQR-PC-GGILADDMGLGKTLT 590
Query: 313 IIALIQMQRSLQSKSKTEVLGNQKTE 338
+IALI Q+ + KTE G++K E
Sbjct: 591 MIALILTQKQM----KTEK-GSKKLE 611
Score = 88 (36.0 bits), Expect = 3.5e-52, Sum P(6) = 3.5e-52
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD 901
KS+V SQWT ML +V L + ++Y LDG+++ R V++FN +
Sbjct: 999 KSVVVSQWTSMLKVVAVHLQRLGLKYSMLDGSVNPKQRMDVVEEFNNN 1046
Score = 75 (31.5 bits), Expect = 3.5e-52, Sum P(6) = 3.5e-52
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 639 YKKLESD---SLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKIS 695
++K+ D S K+F A + + + A++L MLLRLRQ C H L+K D +
Sbjct: 874 FEKVAQDFGCSQKEFLASSQSAVQVSSTAHVLSMLLRLRQCCCHLSLLK-VALDQANLAN 932
Query: 696 GEMAKRLPRDMLIDLLSRLET 716
++ + + LS L+T
Sbjct: 933 EGLSLSIEEQLSALTLSELQT 953
Score = 38 (18.4 bits), Expect = 4.4e-41, Sum P(5) = 4.4e-41
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 289 KETRSLHCLGG 299
+ETR C+GG
Sbjct: 284 RETREKECIGG 294
Score = 37 (18.1 bits), Expect = 3.5e-52, Sum P(6) = 3.5e-52
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 108 KNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSL 150
KN G +T + + + I + T+P H+L
Sbjct: 279 KNCGDRETREKECIGGKNGEMKPIPKENTTSTTVPQAASQHAL 321
>UNIPROTKB|E1C1L9 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271 Pfam:PF06839
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0008270 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:AADN02032807
IPI:IPI00821328 Ensembl:ENSGALT00000036922 Uniprot:E1C1L9
Length = 1167
Score = 293 (108.2 bits), Expect = 4.0e-52, Sum P(6) = 4.0e-52
Identities = 59/151 (39%), Positives = 92/151 (60%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C PL +V W RV+LDEA TIKN + Q + A C LRA RW ++GTPIQN++ D+YS RF
Sbjct: 726 CSPLLRVAWARVILDEAHTIKNPKVQTSIAVCKLRASARWAVTGTPIQNNLLDMYSLLRF 785
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFID-GQPIINLPPK 622
L+ P+ YK + K + N+ G +L + R+++LRRTK G+P+++LP +
Sbjct: 786 LRCSPFDEYKVW----KYQVDNNTKKGGDRLSLLTRSLLLRRTKDQLDSTGKPLVSLPQR 841
Query: 623 TISLTKVDFSKEEWAFYKKLESDSLKKFKAF 653
++ L ++ S EE + Y L + S +++
Sbjct: 842 SMQLHQLKLSAEEQSVYNVLFARSRSTLQSY 872
Score = 168 (64.2 bits), Expect = 4.0e-52, Sum P(6) = 4.0e-52
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 383 PAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442
P+ TL++CPAS++ W +E++ +V L V +YHG +R K L++YD+V+TTYS+
Sbjct: 640 PSCSTLIICPASLIHHWKKEIDRRV-SFGKLRVYLYHGPNREKHAEVLSEYDIVVTTYSL 698
Query: 443 VTNEVPKQPSVDEEEADEKNGETYGLSSEFS 473
++ EVP S +E E K+ E SS S
Sbjct: 699 LSKEVPT--SKEEGEFPAKDHEVGSGSSACS 727
Score = 149 (57.5 bits), Expect = 4.0e-52, Sum P(6) = 4.0e-52
Identities = 41/86 (47%), Positives = 55/86 (63%)
Query: 253 ALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTIS 312
+LE + A P GL V LL HQ+ ALAW+L +E++ C GGILADD GLGKT++
Sbjct: 551 SLESCPTEQAVAEDPSGL-KVPLLLHQRQALAWLLWRESQR-PC-GGILADDMGLGKTLT 607
Query: 313 IIALIQMQRSLQSKSKTEVLGNQKTE 338
+IALI Q+ + KTE G++K E
Sbjct: 608 MIALILTQKQM----KTEK-GSKKLE 628
Score = 88 (36.0 bits), Expect = 4.0e-52, Sum P(6) = 4.0e-52
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD 901
KS+V SQWT ML +V L + ++Y LDG+++ R V++FN +
Sbjct: 1016 KSVVVSQWTSMLKVVAVHLQRLGLKYSMLDGSVNPKQRMDVVEEFNNN 1063
Score = 75 (31.5 bits), Expect = 4.0e-52, Sum P(6) = 4.0e-52
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 639 YKKLESD---SLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKIS 695
++K+ D S K+F A + + + A++L MLLRLRQ C H L+K D +
Sbjct: 891 FEKVAQDFGCSQKEFLASSQSAVQVSSTAHVLSMLLRLRQCCCHLSLLK-VALDQANLAN 949
Query: 696 GEMAKRLPRDMLIDLLSRLET 716
++ + + LS L+T
Sbjct: 950 EGLSLSIEEQLSALTLSELQT 970
Score = 38 (18.4 bits), Expect = 4.9e-41, Sum P(5) = 4.9e-41
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 289 KETRSLHCLGG 299
+ETR C+GG
Sbjct: 284 RETREKECIGG 294
Score = 37 (18.1 bits), Expect = 4.0e-52, Sum P(6) = 4.0e-52
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 108 KNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSL 150
KN G +T + + + I + T+P H+L
Sbjct: 279 KNCGDRETREKECIGGKNGEMKPIPKENTTSTTVPQAASQHAL 321
>SGD|S000000318 [details] [associations]
symbol:RAD16 "Protein that binds damaged DNA during NER"
species:4932 "Saccharomyces cerevisiae" [GO:0031463 "Cul3-RING
ubiquitin ligase complex" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0000113 "nucleotide-excision repair factor 4
complex" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0000715 "nucleotide-excision repair, DNA damage
recognition" evidence=IMP;IDA] [GO:0042787 "protein ubiquitination
involved in ubiquitin-dependent protein catabolic process"
evidence=IMP] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SGD:S000000318 Pfam:PF00097 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:BK006936 GO:GO:0000113 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 EMBL:X78993 EMBL:X66247 InterPro:IPR017907
GO:GO:0042787 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031463 GO:GO:0000715 EMBL:M86929 EMBL:Z35983
EMBL:M83553 PIR:S25366 RefSeq:NP_009672.1 ProteinModelPortal:P31244
SMR:P31244 DIP:DIP-697N IntAct:P31244 MINT:MINT-616306
STRING:P31244 PaxDb:P31244 EnsemblFungi:YBR114W GeneID:852411
KEGG:sce:YBR114W CYGD:YBR114w GeneTree:ENSGT00700000104545
HOGENOM:HOG000179829 KO:K15083 OMA:GVVLNNY OrthoDB:EOG4Q5CXS
NextBio:971261 Genevestigator:P31244 GermOnline:YBR114W
Uniprot:P31244
Length = 790
Score = 188 (71.2 bits), Expect = 6.6e-52, Sum P(6) = 6.6e-52
Identities = 38/104 (36%), Positives = 62/104 (59%)
Query: 580 KIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFY 639
K + L + +Q +L+ IMLRRTK ++ + LPP+ +++ + F++EE Y
Sbjct: 420 KFGVEGPGLESFNNIQTLLKNIMLRRTK---VERADDLGLPPRIVTVRRDFFNEEEKDLY 476
Query: 640 KKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
+ L +DS +K+ +F + G V NYANI ++ R+RQ DHP LV
Sbjct: 477 RSLYTDSKRKYNSFVEEGVVLNNYANIFTLITRMRQLADHPDLV 520
Score = 180 (68.4 bits), Expect = 6.6e-52, Sum P(6) = 6.6e-52
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + ++RV+LDEA IK+ ++ ARA +L+ ++RWCLSGTP+QN I ++YS RFL
Sbjct: 311 LHNIDFYRVILDEAHNIKDRQSNTARAVNNLKTQKRWCLSGTPLQNRIGEMYSLIRFLNI 370
Query: 567 DPYAVY 572
+P+ Y
Sbjct: 371 NPFTKY 376
Score = 140 (54.3 bits), Expect = 6.6e-52, Sum P(6) = 6.6e-52
Identities = 30/64 (46%), Positives = 38/64 (59%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
+LVV P L QW E+E K L + IYHG SRT D +L YDVVLTTY+++ +
Sbjct: 233 SLVVAPTVALMQWKNEIEQHT--KGQLKIYIYHGASRTTDIKDLQGYDVVLTTYAVLESV 290
Query: 447 VPKQ 450
KQ
Sbjct: 291 FRKQ 294
Score = 107 (42.7 bits), Expect = 6.6e-52, Sum P(6) = 6.6e-52
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
PDG+ ++ LL Q L W++ +E S++ GG+LAD+ G+GKTI IAL+
Sbjct: 177 PDGM-TIKLLPFQLEGLHWLISQE-ESIYA-GGVLADEMGMGKTIQTIALL 224
Score = 103 (41.3 bits), Expect = 6.6e-52, Sum P(6) = 6.6e-52
Identities = 25/46 (54%), Positives = 30/46 (65%)
Query: 853 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF 898
IKSIVFSQ+T MLDLVE L + Q +L G+MS RD +K F
Sbjct: 638 IKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDETIKYF 683
Score = 88 (36.0 bits), Expect = 6.6e-52, Sum P(6) = 6.6e-52
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 720 ICCVCSDPPEDSVVTMCGHVFCYQCASEYITG---DDNMCPAPRCKEQLGADVVFSKTTL 776
IC +C+D E+ + + C H FC C EY+ ++N P C +G + S+ L
Sbjct: 536 ICQLCNDEAEEPIESKCHHKFCRLCIKEYVESFMENNNKLTCPVC--HIGLSIDLSQPAL 593
Query: 777 K 777
+
Sbjct: 594 E 594
Score = 43 (20.2 bits), Expect = 2.2e-22, Sum P(5) = 2.2e-22
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 617 INLPPKT-ISLTKVDFSKEEWAFYKKLESD 645
+N+ P T TK D + ++W F ++ D
Sbjct: 368 LNINPFTKYFCTKCDCASKDWKFTDRMHCD 397
>TAIR|locus:2207175 [details] [associations]
symbol:AT1G05120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
EMBL:CP002684 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15083 IPI:IPI00524131 RefSeq:NP_172004.1 UniGene:At.49853
ProteinModelPortal:F4I795 SMR:F4I795 EnsemblPlants:AT1G05120.1
GeneID:839319 KEGG:ath:AT1G05120 OMA:IGQYKPI Uniprot:F4I795
Length = 833
Score = 216 (81.1 bits), Expect = 3.1e-50, Sum P(5) = 3.1e-50
Identities = 61/149 (40%), Positives = 81/149 (54%)
Query: 597 VLRAIMLRRTK-GTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFAD 655
VL+ I+LRRTK G D + LPP+ I+L + +E+ +Y+ L +S +F + +
Sbjct: 474 VLKDILLRRTKLGRAAD----LALPPRIITLRRDTLDVKEFDYYESLYKNSQAEFNTYIE 529
Query: 656 AGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLE 715
AGT+ NYA+I +L RLRQA DHP LV Y +S SG A L+D
Sbjct: 530 AGTLMNNYAHIFDLLTRLRQAVDHPYLVV-YS-NS----SGANAN------LVDE----N 573
Query: 716 TSSAICCVCSDPPEDSVVTMCGHVFCYQC 744
S C +C DP ED VVT C HVFC C
Sbjct: 574 KSEQECGLCHDPAEDYVVTSCAHVFCKAC 602
Score = 177 (67.4 bits), Expect = 3.1e-50, Sum P(5) = 3.1e-50
Identities = 34/66 (51%), Positives = 43/66 (65%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L V W R++LDEA IK R+ ARA +L A RW LSGTP+QN + +LYS RFL+
Sbjct: 349 LHSVKWNRIILDEAHYIKERRSNTARAVFALEATYRWALSGTPLQNRVGELYSLIRFLQI 408
Query: 567 DPYAVY 572
PY+ Y
Sbjct: 409 RPYSYY 414
Score = 134 (52.2 bits), Expect = 3.1e-50, Sum P(5) = 3.1e-50
Identities = 29/64 (45%), Positives = 37/64 (57%)
Query: 384 AAG-TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442
AAG TLV+CP + QW E+ + + VL+YHG R K+ E YD VLTTYS
Sbjct: 192 AAGCTLVLCPLVAVSQWLNEIA-RFTSPGSTKVLVYHGAKRAKNIKEFMNYDFVLTTYST 250
Query: 443 VTNE 446
V +E
Sbjct: 251 VESE 254
Score = 119 (46.9 bits), Expect = 3.1e-50, Sum P(5) = 3.1e-50
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 245 DERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADD 304
DE + L+ N E P L + LL++QK LAW ++E +S+ GGILAD+
Sbjct: 109 DEHMSEDVDLDQHNAVIAETAEPPSDLIMPLLRYQKEFLAWATKQE-QSV--AGGILADE 165
Query: 305 QGLGKTISIIALIQMQRSLQSKSKTEVLG 333
G+GKTI I+L+ +R + E G
Sbjct: 166 MGMGKTIQAISLVLARREVDRAQFGEAAG 194
Score = 103 (41.3 bits), Expect = 3.1e-50, Sum P(5) = 3.1e-50
Identities = 46/171 (26%), Positives = 70/171 (40%)
Query: 736 CGHVFCYQCASEYITGDDNMCPAPRCKEQL-GADVVFSKTTLKNCVSDDGGGSPTDSPFA 794
CG C+ A +Y+ C CK L G K T C +
Sbjct: 579 CG--LCHDPAEDYVV---TSCAHVFCKACLIGFSASLGKVTCPTC---------SKLLTV 624
Query: 795 DKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPI----E 850
D + D E+ +SK T L LN +++ D S A+ + +
Sbjct: 625 DWTTKADTEHKASK--TTLKGFRASSILNR----IKLDDFQTSTKIEALREEIRFMVERD 678
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD 901
G K+IVFSQ+T LDL+ +L + + +L G+M++ ARD A+ F D
Sbjct: 679 GSAKAIVFSQFTSFLDLINYTLGKCGVSCVQLVGSMTMAARDTAINKFKED 729
>ZFIN|ZDB-GENE-110411-73 [details] [associations]
symbol:si:ch1073-303l5.1 "si:ch1073-303l5.1"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-110411-73 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104545 EMBL:CABZ01070143
EMBL:CU693447 IPI:IPI00993890 Ensembl:ENSDART00000126063
ArrayExpress:E7FD29 Bgee:E7FD29 Uniprot:E7FD29
Length = 1149
Score = 285 (105.4 bits), Expect = 3.2e-50, Sum P(5) = 3.2e-50
Identities = 61/165 (36%), Positives = 98/165 (59%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
PL +V W RV+LDEA +IKN + Q + A C LRA+ RW ++GTPIQN++ D+YS +FL+
Sbjct: 709 PLLRVAWARVILDEAHSIKNPKVQTSMAVCKLRARSRWAVTGTPIQNNLLDMYSLLKFLR 768
Query: 566 YDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTF-IDGQPIINLPPKTI 624
P+ YK + K + S G ++L + RA++LRRTK G+P+++LP +T
Sbjct: 769 CSPFDEYKLW----KAQVDNGSKRGGERLNILTRALLLRRTKDQLDATGKPLVSLPDRTC 824
Query: 625 SLTKVDFSKEEWAFYKKLESDS---LKKF-KAFADAGTVNQNYAN 665
+ ++ S++E A Y + + S L+ + K D T + +N
Sbjct: 825 EIHRLKLSEDEQAVYDVVFAQSRSTLQNYLKRHEDGNTKKGDTSN 869
Score = 172 (65.6 bits), Expect = 3.2e-50, Sum P(5) = 3.2e-50
Identities = 32/86 (37%), Positives = 61/86 (70%)
Query: 386 GTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
GTL++CPAS++ W +E++ +V + L+V +YHG +R + LA++DVV+TTYS+V+
Sbjct: 626 GTLIICPASLVHHWKKEIDKRVKS-SRLTVYLYHGPNRQRSASVLAEHDVVITTYSLVSK 684
Query: 446 EVPKQPSVDEEEADEKNGETYGLSSE 471
E+P V +E+A++ + ++ ++S+
Sbjct: 685 EIP----VQKEDAEKPSKDSDHVASD 706
Score = 158 (60.7 bits), Expect = 3.2e-50, Sum P(5) = 3.2e-50
Identities = 73/260 (28%), Positives = 115/260 (44%)
Query: 78 QEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQT-VNPRIANVASADYEKISSQ-Q 135
Q+ + PGF ++ GQ++D L QL+T + + A ++ + + + +
Sbjct: 369 QKTITSYPGFQIASKVQ-GQSEDPRALHS-----QLKTQLKQKKATLSVVNVSALPDKGE 422
Query: 136 ALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKK 195
LKR + + +L + S ++ E+ + + A+ + P + G I +
Sbjct: 423 RLKRQVKDLEE--ALESLSLTATESQDKDRAEAEHKTAHSFSNPFSCPG-GTI----LLP 475
Query: 196 NDDDIMMYEGNRI-LPSSLMHGKSVSMTQFGG--PSDLAYRSGSADERAVGGDERLIYQA 252
M+ E + L +L G S FG P A+ G E + +A
Sbjct: 476 TAPAAMLKESSSASLGLNLSQGYS---QMFGAVNPQSQAFYGGRMTENRLLAVRNATTEA 532
Query: 253 ------ALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQG 306
+LE EA P GL V LL HQK AL W+L +ET+ C GGILADD G
Sbjct: 533 IDHLHDSLESCPTENTEAHDPKGL-KVELLPHQKRALTWLLWRETQK-PC-GGILADDMG 589
Query: 307 LGKTISIIALIQMQRSLQSK 326
LGKT+++IALI Q+ K
Sbjct: 590 LGKTLTMIALILSQKKKDEK 609
Score = 81 (33.6 bits), Expect = 3.2e-50, Sum P(5) = 3.2e-50
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 840 SSAVHSKSPIEGPIKS-IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF 898
S +HS + KS ++ SQWT ML +V L + +++ +DGT++ R V++F
Sbjct: 985 SDFIHSDRNCQ---KSFVIVSQWTSMLKIVAVHLEKMGLKFAVIDGTVNPKRRMDLVEEF 1041
Query: 899 NTD 901
NT+
Sbjct: 1042 NTN 1044
Score = 56 (24.8 bits), Expect = 3.2e-50, Sum P(5) = 3.2e-50
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 665 NILLMLLRLRQACDHPLLVKE 685
+IL +LLRLRQ C H L+K+
Sbjct: 900 HILSLLLRLRQCCCHLSLLKK 920
>POMBASE|SPAC13G6.01c [details] [associations]
symbol:rad8 "ubiquitin-protein ligase E3 Rad8"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281
"DNA repair" evidence=IGI;IMP] [GO:0006289 "nucleotide-excision
repair" evidence=IMP] [GO:0006301 "postreplication repair"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009650 "UV protection" evidence=IMP] [GO:0016567 "protein
ubiquitination" evidence=NAS] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 PomBase:SPAC13G6.01c Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386 GO:GO:0004842
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006289 GO:GO:0006301 GO:GO:0009650 KO:K15505
HOGENOM:HOG000040492 OrthoDB:EOG4J40R2 EMBL:X74615 PIR:S41478
RefSeq:XP_001713034.1 ProteinModelPortal:P36607 STRING:P36607
PRIDE:P36607 EnsemblFungi:SPAC13G6.01c.1 GeneID:3361391
KEGG:spo:SPAC13G6.01c OMA:PCAHRMC NextBio:20811441 Uniprot:P36607
Length = 1133
Score = 369 (135.0 bits), Expect = 1.4e-49, Sum P(7) = 1.4e-49
Identities = 75/186 (40%), Positives = 114/186 (61%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L V WFRVVLDE I+N ++ A+AC S+ ++ RW ++GTPI N +DDLYS +F++Y
Sbjct: 645 LFSVHWFRVVLDEGHNIRNRESKTAKACHSISSQNRWVITGTPIVNKLDDLYSLIKFMRY 704
Query: 567 DPYAVYKSFYSTIKIPI-SRNSLHGYKKLQAVLRAIMLRRTKGTFI-DGQPIINLPPKTI 624
+P+ Y + + + +P S++ L +Q++L ++LRRTK T +G I+ LPPKT+
Sbjct: 705 EPWCNYTYWQTFVSLPYQSKDVLKALNVVQSILEFLVLRRTKETKDRNGNSIVTLPPKTV 764
Query: 625 SLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK 684
+ +DFS E Y L + + A AGT+ +NY IL +LLRLRQAC P+L+
Sbjct: 765 KIEYLDFSDSERKIYDSLYTKAKSTVNANIVAGTLFRNYTTILGLLLRLRQACCDPVLLS 824
Query: 685 EYDFDS 690
+S
Sbjct: 825 NMTINS 830
Score = 104 (41.7 bits), Expect = 1.4e-49, Sum P(7) = 1.4e-49
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 852 PIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
P K ++FSQ+T LD++ + L + Y R DGTMS R A++ F D +V
Sbjct: 981 PEKVVIFSQFTTFLDIIADVLESEKMGYARFDGTMSQQMRSTALETFRNDPDV 1033
Score = 87 (35.7 bits), Expect = 1.4e-49, Sum P(7) = 1.4e-49
Identities = 24/85 (28%), Positives = 39/85 (45%)
Query: 700 KRLPRDML-IDLLSRLETSSAICCVC-SDPPEDSVVTMCGHVFCYQCASEYITGDD--NM 755
K +P D+L ID L E C +C ++P ++ ++ C H C C SE+I N+
Sbjct: 855 KPIPSDILKIDTLKSFEALITECPICCNEPIQNPLLLNCKHACCGDCLSEHIQYQKRRNI 914
Query: 756 CP--APRCKEQLGADVVFSKTTLKN 778
P C++ V+ +KN
Sbjct: 915 IPPLCHTCRQPFNEQDVYKPFFVKN 939
Score = 78 (32.5 bits), Expect = 1.4e-49, Sum P(7) = 1.4e-49
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 298 GGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQK 336
GGILAD+ GLGKTI +++LI + + E + K
Sbjct: 524 GGILADEMGLGKTIEVLSLIHSRPCFSTDEIPEAFRHSK 562
Score = 72 (30.4 bits), Expect = 1.4e-49, Sum P(7) = 1.4e-49
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYD------VVLTTY 440
TLVV P S+L QW E KV +IY+G + D ++ D +++T+Y
Sbjct: 572 TLVVAPMSLLDQWHSEA-CKVSQGTKFRSMIYYGSEKPLD-LKSCVIDTSTAPLIIITSY 629
Query: 441 SIVTNEVPKQ 450
++ +E +Q
Sbjct: 630 GVLLSEFSQQ 639
Score = 55 (24.4 bits), Expect = 1.4e-49, Sum P(7) = 1.4e-49
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 228 SDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWML 287
SDL S + DE V D+ I ++ A P +++L ++QK AL WM
Sbjct: 400 SDLT-PSSTEDEEDVVSDQLAILYDKVKTSGAELPSAPKPS-TFALDLREYQKQALYWMC 457
Query: 288 QKE 290
KE
Sbjct: 458 CKE 460
Score = 44 (20.5 bits), Expect = 1.4e-49, Sum P(7) = 1.4e-49
Identities = 15/76 (19%), Positives = 34/76 (44%)
Query: 87 FSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQ 146
F + + N D + ++ Q+ ++ ++ V + ++++AL P
Sbjct: 107 FDESFNIKNSNPDSESQKDTDASLTQMDQLSNTVS-VKDLSINRNTNKKALNAVSP---- 161
Query: 147 PHSLNTKSKSSVENMN 162
SLN S SSV++++
Sbjct: 162 --SLNLSSNSSVQDVS 175
Score = 41 (19.5 bits), Expect = 7.2e-09, Sum P(6) = 7.2e-09
Identities = 29/124 (23%), Positives = 52/124 (41%)
Query: 571 VYKSFYSTIKIPISRNSLHG--YKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTK 628
+Y S Y+ K ++ N + G ++ +L +L R + D + N+ + +
Sbjct: 778 IYDSLYTKAKSTVNANIVAGTLFRNYTTILG--LLLRLRQACCDPVLLSNMTINSETFDD 835
Query: 629 VDFSKEEW-----AFY---KKLESD-----SLKKFKAFADAGTV--NQNYANILLMLLRL 673
+FS E++ F K + SD +LK F+A + N+ N LL L
Sbjct: 836 FEFSVEQFNSLINQFVVTGKPIPSDILKIDTLKSFEALITECPICCNEPIQNPLL--LNC 893
Query: 674 RQAC 677
+ AC
Sbjct: 894 KHAC 897
>POMBASE|SPBC582.10c [details] [associations]
symbol:SPBC582.10c "ATP-dependent DNA helicase Rhp16b
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000113
"nucleotide-excision repair factor 4 complex" evidence=ISO]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006289 "nucleotide-excision repair"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
PomBase:SPBC582.10c GO:GO:0005829 GO:GO:0005524 GO:GO:0003677
EMBL:CU329671 GO:GO:0000113 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006289
GO:GO:0008094 EMBL:AB027965 PIR:T37973 RefSeq:NP_595178.1
ProteinModelPortal:Q10332 EnsemblFungi:SPBC582.10c.1 GeneID:2540907
KEGG:spo:SPBC582.10c HOGENOM:HOG000241058 OMA:QACNHPQ
OrthoDB:EOG44XNQX NextBio:20802022 Uniprot:Q10332
Length = 830
Score = 347 (127.2 bits), Expect = 3.6e-49, Sum P(5) = 3.6e-49
Identities = 80/218 (36%), Positives = 123/218 (56%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAV 571
W+R++LDEA TIKN ++ A ACC+L+ RWCL+GTP+QN++D+LYS +FL +P+
Sbjct: 378 WWRIILDEAHTIKNKSSKSALACCALQGINRWCLTGTPLQNNVDELYSLVKFLHINPFND 437
Query: 572 YKSFYSTIKIPISRNSLH-GYKKLQAVLRAIMLRRTKGTFI------DGQP-IINLPPKT 623
+ I +P+ + + +K+L+ +L IMLRRTK T + DG + L +
Sbjct: 438 QSVWKDQISLPLCQGEENLVFKRLRMLLSVIMLRRTK-TLLEANAGKDGTGGALKLSKRL 496
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
+ F + E FY L + + F ++G + +NY NIL +LLRLRQAC+HP +
Sbjct: 497 VYKVICKFEESERDFYSNLARNMERTMSNFVNSGKLGKNYTNILCLLLRLRQACNHPQSL 556
Query: 684 K---EYDFDSVGKISGEM-AKRLPRDMLID-LLSRLET 716
E D D+ + G +L D +D L + LET
Sbjct: 557 NFQFEQDVDAFNALDGAANTNKLASDQDVDDLANLLET 594
Score = 130 (50.8 bits), Expect = 3.6e-49, Sum P(5) = 3.6e-49
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TLVV P S+++QW E +V K+ L+ ++YHG SR K + +YDVV+TTY I+ +E
Sbjct: 291 TLVVAPLSLIKQW----ESEVQTKSKLTAIVYHGASRYKLLKVIHEYDVVITTYQILVSE 346
Score = 116 (45.9 bits), Expect = 3.6e-49, Sum P(5) = 3.6e-49
Identities = 26/48 (54%), Positives = 31/48 (64%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCL-GGILADDQGLGKTISIIALI 317
+ + LL HQ L W+ +ET S GGILADD GLGKTI +IALI
Sbjct: 229 MHIRLLDHQVQGLTWLKSRETVSKSSASGGILADDMGLGKTIQMIALI 276
Score = 88 (36.0 bits), Expect = 3.6e-49, Sum P(5) = 3.6e-49
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 849 IEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAV----KDFNTDREV 904
+ G K+I+FSQ+T LD+++ L + I + R DG M+ AR++++ D T +
Sbjct: 667 VRGLRKTIIFSQFTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSLDLLRSDSGTQVLL 726
Query: 905 CSL 907
CSL
Sbjct: 727 CSL 729
Score = 42 (19.8 bits), Expect = 4.9e-11, Sum P(3) = 4.9e-11
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 832 HDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLD 866
H+ G++G S +KS + F W +LD
Sbjct: 350 HNTTGTDGKSPTEAKSYEKKKPSLFAFYWWRIILD 384
Score = 41 (19.5 bits), Expect = 3.6e-49, Sum P(5) = 3.6e-49
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 795 DKSGILD-NE---YISSKIRTVLDIL 816
DK GI D N+ Y SSKIR +L IL
Sbjct: 632 DK-GIQDPNDKTLYKSSKIREILKIL 656
>ASPGD|ASPL0000049992 [details] [associations]
symbol:AN2256 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0000151 "ubiquitin
ligase complex" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271
Pfam:PF08797 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 SMART:SM00910 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K15711 HOGENOM:HOG000172619
EMBL:AACD01000037 RefSeq:XP_659860.1 ProteinModelPortal:Q5BB24
EnsemblFungi:CADANIAT00008948 GeneID:2874756 KEGG:ani:AN2256.2
OMA:IVGVRYY OrthoDB:EOG4G1QQQ Uniprot:Q5BB24
Length = 972
Score = 332 (121.9 bits), Expect = 1.4e-48, Sum P(5) = 1.4e-48
Identities = 112/334 (33%), Positives = 162/334 (48%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L V W RVVLDE TI+N R++ A C+LRA RW L+GTPI N++ DLYS RFL
Sbjct: 515 LFSVKWRRVVLDEGHTIRNPRSKGFSAACALRADSRWALTGTPIVNTLKDLYSQIRFLGL 574
Query: 567 ----DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGT-FIDGQPIINLPP 621
+ +AV+ S I+ P+ + LQA++ I LRR K F++ + LP
Sbjct: 575 TGGLEDFAVFNSVL--IR-PLMSDDPDSRLLLQALMSTICLRRRKDMGFVN----LRLPT 627
Query: 622 KTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPL 681
T + ++ F E Y +S++ F Y+++L ++LRLRQ C+H
Sbjct: 628 LTSRVLRIKFHPHEKEKYDMFQSEAKGMLLDFKSNNKTGTTYSHLLEVILRLRQVCNHWA 687
Query: 682 LVKEYDFDSVGKI--SGEMAKRLPRDM--LIDLLS-RLETSSAICCVCSDPPEDSVVTMC 736
L K D + I + P ++ L D+L R+E S IC +C D E V+T C
Sbjct: 688 LAKNR-LDKLAAILDKHQTVPLTPDNIKALQDMLQIRIE-SQEICPICLDILETPVITAC 745
Query: 737 GHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADK 796
H F + C + I + CP C+ ++ +K++L +D G TD AD
Sbjct: 746 AHAFDHDCIEQVIVRQ-HKCPI--CRAEIE-----NKSSLVAPAADLGEN--TDDVSADP 795
Query: 797 SGILDNEYISSKIRTVLDIL--HTQCELNTKCSI 828
DN SSKI ++ IL H Q E TK I
Sbjct: 796 ----DNP--SSKIEALIKILTAHGQVEA-TKTVI 822
Score = 125 (49.1 bits), Expect = 1.4e-48, Sum P(5) = 1.4e-48
Identities = 25/54 (46%), Positives = 38/54 (70%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREVCSL 907
K+++FSQWT L LVE L IQ+ R+DG M+ ARDR+++ F+TD + C++
Sbjct: 819 KTVIFSQWTSFLTLVEPHLQNAGIQFARIDGKMTSIARDRSMRRFSTDPK-CTV 871
Score = 113 (44.8 bits), Expect = 1.4e-48, Sum P(5) = 1.4e-48
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++ P ++ W ++++ + A VLIYHG R +D L YDVV+T+Y + E
Sbjct: 444 TLIISPVGIMSNWRNQIQEHTNPEQAPRVLIYHGPGRKED-ANLDHYDVVVTSYGTLATE 502
Score = 86 (35.3 bits), Expect = 1.4e-48, Sum P(5) = 1.4e-48
Identities = 21/31 (67%), Positives = 24/31 (77%)
Query: 298 GGILADDQGLGKTISIIALIQMQRSLQSKSK 328
GGILADD GLGKTI II+LI + S Q K+K
Sbjct: 410 GGILADDMGLGKTIQIISLI-LSNS-QPKTK 438
Score = 69 (29.3 bits), Expect = 1.4e-48, Sum P(5) = 1.4e-48
Identities = 19/40 (47%), Positives = 23/40 (57%)
Query: 256 DL-NQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSL 294
DL N P VE+ P L S LL +Q+ LAWM+ KE L
Sbjct: 338 DLENMPMVES--PSSL-STTLLPYQRQGLAWMISKENPGL 374
Score = 40 (19.1 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 406 KVPD-KAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKN 462
K PD + S L G R + P + LT S EVP QP + E + +++
Sbjct: 6 KAPDSRKRFSYLNKVSGLRKRAPGWYILIRLQLTR-SPTKLEVPLQPKIMESRSTKRS 62
>POMBASE|SPCC330.01c [details] [associations]
symbol:rhp16 "Rad16 homolog Rhp16" species:4896
"Schizosaccharomyces pombe" [GO:0000109 "nucleotide-excision repair
complex" evidence=IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISM]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IC;IDA]
[GO:0006289 "nucleotide-excision repair" evidence=IGI] [GO:0006290
"pyrimidine dimer repair" evidence=IMP] [GO:0008270 "zinc ion
binding" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=ISM] [GO:0034644 "cellular response to UV" evidence=IGI]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
PomBase:SPCC330.01c Pfam:PF00097 Prosite:PS00518 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004003
GO:GO:0034644 GO:GO:0004842 InterPro:IPR017907 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0000109
HOGENOM:HOG000179829 OrthoDB:EOG4Q5CXS EMBL:S83324 EMBL:AB027876
PIR:T41479 PIR:T52472 ProteinModelPortal:P79051 STRING:P79051
NextBio:20800041 Uniprot:P79051
Length = 861
Score = 178 (67.7 bits), Expect = 2.6e-46, Sum P(6) = 2.6e-46
Identities = 33/66 (50%), Positives = 46/66 (69%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L ++ ++R++LDEA IK+ ARA C LR R+ CLSGTP+QN I +L+S RFL+
Sbjct: 382 LHQMEFYRIILDEAHGIKSRTCNTARAVCGLRTTRKICLSGTPLQNRIGELFSLLRFLRA 441
Query: 567 DPYAVY 572
DP+A Y
Sbjct: 442 DPFAYY 447
Score = 177 (67.4 bits), Expect = 2.6e-46, Sum P(6) = 2.6e-46
Identities = 38/93 (40%), Positives = 57/93 (61%)
Query: 591 YKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKF 650
+KK+ ++L+ IMLRRTK ++ + LPP+ + + K F++EE Y+ L DS +KF
Sbjct: 502 FKKVHSLLKHIMLRRTK---LERADDLGLPPRVVEVRKDLFNEEEEDVYQSLYMDSKRKF 558
Query: 651 KAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
+ G V NYANI ++ R+RQ DHP LV
Sbjct: 559 NTYLAEGVVLNNYANIFQLITRMRQMADHPDLV 591
Score = 117 (46.2 bits), Expect = 2.6e-46, Sum P(6) = 2.6e-46
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TLVV P + QW E+ D +KA LS +Y+G +R EL+ YDVVLT+Y+++ +
Sbjct: 304 TLVVAPVVAIMQWKEEI-DTHTNKA-LSTYLYYGQARDISGEELSSYDVVLTSYNVIESV 361
Query: 447 VPKQPS 452
K+ S
Sbjct: 362 YRKERS 367
Score = 98 (39.6 bits), Expect = 2.6e-46, Sum P(6) = 2.6e-46
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +NLL Q+ + W+ ++E S GGILAD+ G+GKTI IAL+
Sbjct: 251 LVLNLLPFQREGVYWLKRQEDSSFG--GGILADEMGMGKTIQTIALL 295
Score = 95 (38.5 bits), Expect = 2.6e-46, Sum P(6) = 2.6e-46
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 720 ICCVCSDPPEDSVVTMCGHVFCYQCASEYIT--GDDNMCPAPRCKEQLGADV 769
+C +C + +D++ + C H FC C +EYI GD P C L D+
Sbjct: 608 VCKICDEVAQDAIESRCHHTFCRLCVTEYINAAGDGENVNCPSCFIPLSIDL 659
Score = 90 (36.7 bits), Expect = 2.6e-46, Sum P(6) = 2.6e-46
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 853 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD 901
+KSIVFSQ+T MLDL+ L + +LDG M+ AR ++ F+ D
Sbjct: 709 LKSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSND 757
Score = 38 (18.4 bits), Expect = 5.1e-41, Sum P(6) = 5.1e-41
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 778 NCVSDDGGGSP 788
NCV DGG +P
Sbjct: 734 NCVKLDGGMTP 744
>CGD|CAL0006085 [details] [associations]
symbol:RAD16 species:5476 "Candida albicans" [GO:0000113
"nucleotide-excision repair factor 4 complex" evidence=IEA]
[GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0034644
"cellular response to UV" evidence=IEA] [GO:0000715
"nucleotide-excision repair, DNA damage recognition" evidence=IEA]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IEA] InterPro:IPR001841
InterPro:IPR018957 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 CGD:CAL0006085 Pfam:PF00097
Prosite:PS00518 GO:GO:0005524 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K15083
RefSeq:XP_721196.1 RefSeq:XP_721468.1 ProteinModelPortal:Q5AI84
STRING:Q5AI84 GeneID:3636874 GeneID:3637198 KEGG:cal:CaO19.10486
KEGG:cal:CaO19.2969 Uniprot:Q5AI84
Length = 852
Score = 192 (72.6 bits), Expect = 5.0e-46, Sum P(5) = 5.0e-46
Identities = 64/242 (26%), Positives = 112/242 (46%)
Query: 580 KIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFY 639
K I+ L G+ L+++L +MLRRTK I+ + LPP+ + + + F++EE Y
Sbjct: 477 KFGIAGLGLEGFNNLRSLLDHVMLRRTK---IERADDLGLPPRVVEIRRDFFNEEEKDLY 533
Query: 640 KKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHP-LLVKEYDFDSVG-KISGE 697
+ L SDS +KF + G V NYANI ++ R+RQ DHP L++K +++ +I G
Sbjct: 534 QSLYSDSKRKFNDYVAEGVVLNNYANIFTLITRMRQLADHPDLVLKRVGSNAISNEIDGV 593
Query: 698 MAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCP 757
+ +L D + + + C +C +S + + C C D P
Sbjct: 594 IMCQLCDDEAEEPIES-KCHHRFCRMCIQEYMESFMGASNKLECPVC--HIGLSIDLEQP 650
Query: 758 APRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILH 817
A E+L F+K ++ N + G S ++ + + + S T+ I+
Sbjct: 651 AIEVDEEL-----FTKASIVNRIKSGAHGGEWRSSTKIEALVEELYKLRSDRHTIKSIVF 705
Query: 818 TQ 819
+Q
Sbjct: 706 SQ 707
Score = 175 (66.7 bits), Expect = 5.0e-46, Sum P(5) = 5.0e-46
Identities = 29/63 (46%), Positives = 44/63 (69%)
Query: 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPY 569
+ ++RV+LDEA IK+ + +RA L K+RWCL+GTP+QN I ++YS R++K DP+
Sbjct: 371 IEFYRVILDEAHNIKDRNSNTSRAAGKLNTKKRWCLTGTPLQNRIGEMYSLIRYMKLDPF 430
Query: 570 AVY 572
Y
Sbjct: 431 HSY 433
Score = 133 (51.9 bits), Expect = 5.0e-46, Sum P(5) = 5.0e-46
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEV 447
LV+ P L QW E+E K + L VL+YHG +R+ EL++YDV+LT+YS++ +
Sbjct: 290 LVIGPTVALMQWKNEIE-KHTEPGMLKVLLYHGSNRSNSIQELSQYDVILTSYSVLESVY 348
Query: 448 PKQ 450
KQ
Sbjct: 349 RKQ 351
Score = 107 (42.7 bits), Expect = 5.0e-46, Sum P(5) = 5.0e-46
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 258 NQPKV---EATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISII 314
N PK+ A P G+ ++ LL Q L W++++E + GGILAD+ G+GKTI I
Sbjct: 221 NTPKITPERAEHPPGM-TIKLLPFQLEGLNWLIKQEDGEFN--GGILADEMGMGKTIQTI 277
Query: 315 ALIQMQRS 322
L RS
Sbjct: 278 GLFMHDRS 285
Score = 104 (41.7 bits), Expect = 5.0e-46, Sum P(5) = 5.0e-46
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 853 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF--NTDREV 904
IKSIVFSQ+T MLDL++ L + +L G+MS RD +K F NT+ EV
Sbjct: 700 IKSIVFSQFTSMLDLIQWRLKRAGFNTVKLSGSMSPQQRDNTIKHFMENTEVEV 753
>WB|WBGene00010061 [details] [associations]
symbol:F54E12.2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z73102 EMBL:Z82271
GeneTree:ENSGT00700000104545 KO:K15173 PIR:T18666
RefSeq:NP_502137.1 ProteinModelPortal:G5EEW5 SMR:G5EEW5
IntAct:G5EEW5 EnsemblMetazoa:F54E12.2.1 EnsemblMetazoa:F54E12.2.2
GeneID:178054 KEGG:cel:CELE_F54E12.2 CTD:178054 WormBase:F54E12.2
OMA:QTCAVTN NextBio:899526 Uniprot:G5EEW5
Length = 1091
Score = 240 (89.5 bits), Expect = 1.5e-45, Sum P(6) = 1.5e-45
Identities = 53/146 (36%), Positives = 88/146 (60%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
LA++ W RV+LDEA TIKN ++ ++A C L A RWCLSGTPI N++ DLYS RFL+
Sbjct: 645 LAQICWSRVILDEAHTIKNRQSLASKAVCRLSAFSRWCLSGTPIHNNLWDLYSLVRFLRI 704
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTF--IDGQPIINLPPKTI 624
P++ K + +I +P+ ++ + + ++LRRTK + Q ++ LPPK +
Sbjct: 705 RPFSDDKYWKESI-MPMKPIMAD---RVNLLTKNLLLRRTKDQTCAVTNQKLVQLPPKNV 760
Query: 625 SLTKVDFSKEEWAFYKKLESDSLKKF 650
+ +++ +E Y+ + ++ KKF
Sbjct: 761 EVHELELDGDEAQAYE-IMMEAAKKF 785
Score = 158 (60.7 bits), Expect = 1.5e-45, Sum P(6) = 1.5e-45
Identities = 30/85 (35%), Positives = 55/85 (64%)
Query: 383 PAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKD--PVELAKYDVVLTTY 440
P+ GTL+V PAS++ QW E++ ++ D + LS ++HG + +D LA+YDVV+TT+
Sbjct: 544 PSNGTLIVAPASLIHQWDAEIDRRLDD-SVLSTYMFHGTKKQRDIDARRLARYDVVITTF 602
Query: 441 SIVTNEVPKQPSVDEEEADEKNGET 465
+++ NE+ ++ + D +GE+
Sbjct: 603 NLIANELIEKIRTKSKADDSSDGES 627
Score = 131 (51.2 bits), Expect = 1.5e-45, Sum P(6) = 1.5e-45
Identities = 36/91 (39%), Positives = 52/91 (57%)
Query: 246 ERLIYQAALEDLNQP-KVEAT-LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILAD 303
+R++ Q A P + E T P G + L+ HQK L WM +ET+ GGILAD
Sbjct: 441 DRVVRQLAEATHTIPDETELTDTPKGF-KLELMPHQKAGLTWMRWRETQPQP--GGILAD 497
Query: 304 DQGLGKTISIIALIQMQRSLQSKSKTEVLGN 334
D GLGKT+S+I+LI Q++ + + + GN
Sbjct: 498 DMGLGKTLSMISLIAHQKAARRARRED--GN 526
Score = 84 (34.6 bits), Expect = 1.5e-45, Sum P(6) = 1.5e-45
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 656 AGTVNQNYANILLMLLRLRQACDHPLLVKE-YDFDSVGKISGEMAKRLPRDMLIDLLSR 713
AG+ + + +L++LLRLRQAC H + K D D+ I G+ A+ D L +LL +
Sbjct: 828 AGSNFEKMSCVLMLLLRLRQACVHFNITKTGVDMDAFSLIGGDNAEEANVDDLNELLEK 886
Score = 75 (31.5 bits), Expect = 1.5e-45, Sum P(6) = 1.5e-45
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDR 902
K ++ SQWT +L+L+E + +Y + G + + R V FN ++
Sbjct: 935 KVVIVSQWTSVLNLIEIHIKSSGFKYTSITGQVLVKDRQERVDSFNREK 983
Score = 61 (26.5 bits), Expect = 1.5e-45, Sum P(6) = 1.5e-45
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 778 NCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIV 829
N +G D P A + I D +Y+S KI+ L+I+ E K IV
Sbjct: 889 NMTLGNGDNEERDKPRAT-TRIFDPDYLSCKIKNTLEIVENIMEKKEKVVIV 939
Score = 39 (18.8 bits), Expect = 3.5e-24, Sum P(5) = 3.5e-24
Identities = 25/88 (28%), Positives = 34/88 (38%)
Query: 390 VCPASVLRQWAR--ELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEV 447
+C +S RQ + ED V D++ SV P A + T S T+
Sbjct: 28 ICRSSPQRQSKESDDQEDSVVDESMKSV----NSPIVNTPSSTASH----CTNSFATS-T 78
Query: 448 PKQPSVDEEEADEKNGETYGLSSEFSVN 475
PK S A + G +YG S S N
Sbjct: 79 PKSKS----NASTRLGSSYGSSRSSSQN 102
Score = 37 (18.1 bits), Expect = 2.9e-12, Sum P(5) = 2.9e-12
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 448 PKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKI 481
PK V E E D + Y + E + K KK+
Sbjct: 757 PKNVEVHELELDGDEAQAYEIMME-AAKKFVKKL 789
>GENEDB_PFALCIPARUM|MAL13P1.216 [details] [associations]
symbol:MAL13P1.216 "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003678 "DNA helicase
activity" evidence=ISS] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HSSP:P38398 EMBL:AL844509 KO:K15505 RefSeq:XP_001350155.1
ProteinModelPortal:Q8IDQ5 EnsemblProtists:MAL13P1.216:mRNA
GeneID:813773 KEGG:pfa:MAL13P1.216 EuPathDB:PlasmoDB:PF3D7_1343400
HOGENOM:HOG000283331 ProtClustDB:CLSZ2433454 Uniprot:Q8IDQ5
Length = 1446
Score = 417 (151.9 bits), Expect = 1.6e-45, Sum P(4) = 1.6e-45
Identities = 109/318 (34%), Positives = 162/318 (50%)
Query: 386 GTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
GTLV+ P +++ QW E+E + ++ IY+G S+ EL+ Y VVLTTYS + +
Sbjct: 738 GTLVIAPLALIYQWKEEIERHTKE-GFVTCYIYYGTSKDISSEELSGYSVVLTTYSTLVS 796
Query: 446 EVPKQPSVD-EEEADEKNGETYGLSSEF----SVNKKRKKIXXXXXXXXXXXXXXXXXXI 500
E + +A+ N TY F S + +KK+ I
Sbjct: 797 EYKNTLNKKFSNKAENNNNSTYTNKESFFKDVSSSTTKKKMNNFFMKTVLNSGNKNNDNI 856
Query: 501 ---D--------YGCG--PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSG 547
D Y PL + W R+++DEA IKN + + A LR +R WCL+G
Sbjct: 857 FFFDKKKTNTMLYNMKEYPLYNITWRRIIIDEAHVIKNKNSIQSVAVWKLRGERNWCLTG 916
Query: 548 TPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLH-GYKKLQAVLRAIMLRRT 606
TPIQNSI D++ FRFL PY + + I +++N L+ ++ + I+LRRT
Sbjct: 917 TPIQNSIFDIFPLFRFLGIKPYGTIEWWNKEIVDYVNKNKLNLALDVVRKISSPILLRRT 976
Query: 607 KGTFI-DGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYAN 665
K + +G II+LP K I L K++FS EE FY+ + S KF + G V +Y++
Sbjct: 977 KKSKTKNGNSIISLPKKNIHLEKLEFSLEEEDFYRAIFYRSKTKFDTYMHDGNVLSHYSH 1036
Query: 666 ILLMLLRLRQACDHPLLV 683
+L +LLRLRQ C HPLL+
Sbjct: 1037 VLQLLLRLRQCCSHPLLL 1054
Score = 86 (35.3 bits), Expect = 1.6e-45, Sum P(4) = 1.6e-45
Identities = 30/112 (26%), Positives = 50/112 (44%)
Query: 721 CCVCSDPPEDSVVTMCGHVFCYQCASEY--ITG-DDNMCPAPRCKEQLGADVVFSKTTLK 777
CC+C + +++ C H+ C +CA +Y +T D CP +C D S +LK
Sbjct: 1166 CCICLEDATYPLISKCLHIMCKKCADDYFHLTQIADKKCP--QC------DNYISLKSLK 1217
Query: 778 NCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIV 829
+ SP D K DN S+K++ + + H Q ++ + IV
Sbjct: 1218 TLQENK---SPLDELL--KKMKKDNFVYSTKLKKLFE--HVQNDMQNELHIV 1262
Score = 82 (33.9 bits), Expect = 1.6e-45, Sum P(4) = 1.6e-45
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 844 HSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDR 902
H ++ ++ + +VFSQW L ++E LN + I + DG+++ R + FN +
Sbjct: 1250 HVQNDMQNELHIVVFSQWIGFLKIIEKLLNLYNIANKIYDGSLTFEQRKATLNWFNIQK 1308
Score = 73 (30.8 bits), Expect = 1.6e-45, Sum P(4) = 1.6e-45
Identities = 21/42 (50%), Positives = 24/42 (57%)
Query: 298 GGILADDQGLGKTISIIALIQ---MQRSLQSKSKTEVLGNQK 336
GGILAD+ GLGKTI I LI L SK+ L N+K
Sbjct: 680 GGILADEMGLGKTIQSIGLITHDIYHNKLYSKNNN--LENKK 719
>GENEDB_PFALCIPARUM|PFL2440w [details] [associations]
symbol:PFL2440w "DNA repair protein rhp16,
putative" species:5833 "Plasmodium falciparum" [GO:0006289
"nucleotide-excision repair" evidence=ISS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001510 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00645 Pfam:PF13639 PROSITE:PS50064
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 EMBL:AE014188 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 KO:K15083 RefSeq:XP_001350892.1
ProteinModelPortal:Q8I4S6 IntAct:Q8I4S6 MINT:MINT-1665888
EnsemblProtists:PFL2440w:mRNA GeneID:811540 KEGG:pfa:PFL2440w
EuPathDB:PlasmoDB:PF3D7_1250800 HOGENOM:HOG000283588 OMA:KKQLVFD
ProtClustDB:CLSZ2514966 Uniprot:Q8I4S6
Length = 1647
Score = 200 (75.5 bits), Expect = 2.6e-45, Sum P(5) = 2.6e-45
Identities = 64/203 (31%), Positives = 96/203 (47%)
Query: 555 DDLYSYFRFLKYDPYAVYKSFYSTIKIPISR-----NSLHGYKKLQ-AVLRAIMLRRTKG 608
D+ Y YF + + F I PI L G L+ VL I+LRRTKG
Sbjct: 1114 DNKYCYF--CNHSRINHFNYFNKRILKPIQSFGYRGEGLSGMSYLKNEVLDKILLRRTKG 1171
Query: 609 TFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL 668
+ + INL P I + K SKEE FY+ L + +F + ++ TV NYA+I
Sbjct: 1172 ---ERKSDINLKPLIIKIRKDKLSKEEKDFYESLYKQTSTQFNTYVNSNTVLHNYAHIFD 1228
Query: 669 MLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPP 728
+L RLRQA DHP L+ + + SG+ K+ +I +S + +C +C +
Sbjct: 1229 LLSRLRQAADHPYLII-FGNSFLSDPSGKFIKK--NTTIIPAIS----NDYVCGICLENV 1281
Query: 729 E--DSVVTMCGHVFCYQCASEYI 749
+ +++ T C H F C +YI
Sbjct: 1282 QKRNNISTKCNHNFHKSCLKQYI 1304
Score = 172 (65.6 bits), Expect = 2.6e-45, Sum P(5) = 2.6e-45
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRA-KRRWCLSGTPIQNSIDDLYSYFRFLK 565
L ++ W R++LDEA IKN T ++ +L+ RWCL+GTP+QN I +LYS RF++
Sbjct: 1030 LHQIYWNRIILDEAHRIKNRNTSTTQSILNLKCCGYRWCLTGTPLQNRISELYSLIRFIE 1089
Query: 566 YDPYAVY 572
+ PYA Y
Sbjct: 1090 FYPYAYY 1096
Score = 141 (54.7 bits), Expect = 2.6e-45, Sum P(5) = 2.6e-45
Identities = 33/92 (35%), Positives = 54/92 (58%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++ P + + QW E+E K D+ L+V +YHG S+ EL KYD+V+T+Y++V E
Sbjct: 443 TLIIAPVAAVMQWKSEIE-KFVDENILNVYVYHGNSKIISDEELIKYDIVITSYAVV--E 499
Query: 447 VPKQPSVDEEEAD-EKNGETYGLSSEFSVNKK 477
V + V++ + E G Y L + ++KK
Sbjct: 500 VNFRKIVNKHKQPCEYCGRLY-LPNNLDIHKK 530
Score = 109 (43.4 bits), Expect = 2.6e-45, Sum P(5) = 2.6e-45
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQR 321
L +LL++QK + WM+ +E ++ GGILAD+ G+GKTI I LI Q+
Sbjct: 222 LKYDLLQYQKEGIYWMINQEMSNVK--GGILADEMGMGKTIQAITLILCQK 270
Score = 99 (39.9 bits), Expect = 2.6e-45, Sum P(5) = 2.6e-45
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
K ++FSQ+ MLDL+E L +H I +L G MS+ +R+ + +FN D+++
Sbjct: 1496 KCLIFSQYCSMLDLIEYHLKKHNIVCSKLLGYMSMISRNNILYNFNQDKQL 1546
Score = 49 (22.3 bits), Expect = 3.3e-40, Sum P(5) = 3.3e-40
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 867 LVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREVC 905
L + S + ++++ DG ++L + D VKD+ VC
Sbjct: 1390 LEKKSKSISVVKFKNKDGYINLLSNDENVKDYPLGCPVC 1428
Score = 40 (19.1 bits), Expect = 8.0e-29, Sum P(5) = 8.0e-29
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFK 651
+T D K + + KK +S S+ KFK
Sbjct: 1378 ITSKDLLKNKKSLEKKSKSISVVKFK 1403
>UNIPROTKB|Q8I4S6 [details] [associations]
symbol:PFL2440w "DNA repair protein rhp16, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0006289
"nucleotide-excision repair" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001510 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00645 Pfam:PF13639 PROSITE:PS50064
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 EMBL:AE014188 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006289 KO:K15083 RefSeq:XP_001350892.1
ProteinModelPortal:Q8I4S6 IntAct:Q8I4S6 MINT:MINT-1665888
EnsemblProtists:PFL2440w:mRNA GeneID:811540 KEGG:pfa:PFL2440w
EuPathDB:PlasmoDB:PF3D7_1250800 HOGENOM:HOG000283588 OMA:KKQLVFD
ProtClustDB:CLSZ2514966 Uniprot:Q8I4S6
Length = 1647
Score = 200 (75.5 bits), Expect = 2.6e-45, Sum P(5) = 2.6e-45
Identities = 64/203 (31%), Positives = 96/203 (47%)
Query: 555 DDLYSYFRFLKYDPYAVYKSFYSTIKIPISR-----NSLHGYKKLQ-AVLRAIMLRRTKG 608
D+ Y YF + + F I PI L G L+ VL I+LRRTKG
Sbjct: 1114 DNKYCYF--CNHSRINHFNYFNKRILKPIQSFGYRGEGLSGMSYLKNEVLDKILLRRTKG 1171
Query: 609 TFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL 668
+ + INL P I + K SKEE FY+ L + +F + ++ TV NYA+I
Sbjct: 1172 ---ERKSDINLKPLIIKIRKDKLSKEEKDFYESLYKQTSTQFNTYVNSNTVLHNYAHIFD 1228
Query: 669 MLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPP 728
+L RLRQA DHP L+ + + SG+ K+ +I +S + +C +C +
Sbjct: 1229 LLSRLRQAADHPYLII-FGNSFLSDPSGKFIKK--NTTIIPAIS----NDYVCGICLENV 1281
Query: 729 E--DSVVTMCGHVFCYQCASEYI 749
+ +++ T C H F C +YI
Sbjct: 1282 QKRNNISTKCNHNFHKSCLKQYI 1304
Score = 172 (65.6 bits), Expect = 2.6e-45, Sum P(5) = 2.6e-45
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRA-KRRWCLSGTPIQNSIDDLYSYFRFLK 565
L ++ W R++LDEA IKN T ++ +L+ RWCL+GTP+QN I +LYS RF++
Sbjct: 1030 LHQIYWNRIILDEAHRIKNRNTSTTQSILNLKCCGYRWCLTGTPLQNRISELYSLIRFIE 1089
Query: 566 YDPYAVY 572
+ PYA Y
Sbjct: 1090 FYPYAYY 1096
Score = 141 (54.7 bits), Expect = 2.6e-45, Sum P(5) = 2.6e-45
Identities = 33/92 (35%), Positives = 54/92 (58%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++ P + + QW E+E K D+ L+V +YHG S+ EL KYD+V+T+Y++V E
Sbjct: 443 TLIIAPVAAVMQWKSEIE-KFVDENILNVYVYHGNSKIISDEELIKYDIVITSYAVV--E 499
Query: 447 VPKQPSVDEEEAD-EKNGETYGLSSEFSVNKK 477
V + V++ + E G Y L + ++KK
Sbjct: 500 VNFRKIVNKHKQPCEYCGRLY-LPNNLDIHKK 530
Score = 109 (43.4 bits), Expect = 2.6e-45, Sum P(5) = 2.6e-45
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQR 321
L +LL++QK + WM+ +E ++ GGILAD+ G+GKTI I LI Q+
Sbjct: 222 LKYDLLQYQKEGIYWMINQEMSNVK--GGILADEMGMGKTIQAITLILCQK 270
Score = 99 (39.9 bits), Expect = 2.6e-45, Sum P(5) = 2.6e-45
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
K ++FSQ+ MLDL+E L +H I +L G MS+ +R+ + +FN D+++
Sbjct: 1496 KCLIFSQYCSMLDLIEYHLKKHNIVCSKLLGYMSMISRNNILYNFNQDKQL 1546
Score = 49 (22.3 bits), Expect = 3.3e-40, Sum P(5) = 3.3e-40
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 867 LVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREVC 905
L + S + ++++ DG ++L + D VKD+ VC
Sbjct: 1390 LEKKSKSISVVKFKNKDGYINLLSNDENVKDYPLGCPVC 1428
Score = 40 (19.1 bits), Expect = 8.0e-29, Sum P(5) = 8.0e-29
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFK 651
+T D K + + KK +S S+ KFK
Sbjct: 1378 ITSKDLLKNKKSLEKKSKSISVVKFK 1403
>UNIPROTKB|F1N2E8 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0008270 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00700000104545 OMA:WCGSIPW
EMBL:DAAA02007409 IPI:IPI00710264 UniGene:Bt.10162 PRIDE:F1N2E8
Ensembl:ENSBTAT00000033711 Uniprot:F1N2E8
Length = 1163
Score = 250 (93.1 bits), Expect = 3.1e-45, Sum P(6) = 3.1e-45
Identities = 51/138 (36%), Positives = 82/138 (59%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
PL +V W R++LDEA +KN R Q + A C L+A+ RW ++GTPIQN++ D+YS +FL+
Sbjct: 726 PLLRVVWARLILDEAHNVKNPRVQTSMAVCKLQAQARWAVTGTPIQNNLLDMYSLLKFLR 785
Query: 566 YDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFID-GQPIINLPPKTI 624
P+ +K + K + S G ++L + R+++LRRTK G+P++ LP +
Sbjct: 786 CSPFDEFKLW----KSQVDNGSKKGGERLNILTRSLLLRRTKDQLDSTGKPLVVLPHRKF 841
Query: 625 SLTKVDFSKEEWAFYKKL 642
L + S++E Y L
Sbjct: 842 QLHHLKLSEDEETVYSVL 859
Score = 158 (60.7 bits), Expect = 3.1e-45, Sum P(6) = 3.1e-45
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 386 GTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
GTL++CPAS++ W E+E V L V +YHG +R + L+ YD+V+TTYS++
Sbjct: 644 GTLIICPASLIHHWKNEVEKHVSHNR-LRVCLYHGPNRNQHAKVLSTYDIVITTYSLLAK 702
Query: 446 EVPKQPSVDEEEADEKNGETYGLSS 470
E+P + +E+ N G SS
Sbjct: 703 EIPT--AKQDEQIPGANPSVEGTSS 725
Score = 153 (58.9 bits), Expect = 3.1e-45, Sum P(6) = 3.1e-45
Identities = 34/66 (51%), Positives = 46/66 (69%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSK 326
P GL ++LL HQK ALAW+L +E++ GGILADD GLGKT+++IALI Q+ + K
Sbjct: 567 PAGL-KISLLPHQKQALAWLLWRESQKPR--GGILADDMGLGKTLTMIALILTQKKSKEK 623
Query: 327 SKTEVL 332
+T L
Sbjct: 624 DETTAL 629
Score = 82 (33.9 bits), Expect = 3.1e-45, Sum P(6) = 3.1e-45
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDR 902
G KS++ SQWT ML +V L + Y +DG+++ R V+ FN+ R
Sbjct: 1009 GSQKSVIVSQWTSMLKVVALHLKRCGFTYATIDGSVNPKQRMDLVEAFNSPR 1060
Score = 54 (24.1 bits), Expect = 3.1e-45, Sum P(6) = 3.1e-45
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 656 AGT-VNQNYANILLMLLRLRQACDHPLLVK 684
AG+ + +IL LLRLRQ C H L+K
Sbjct: 906 AGSQATSSAVHILSQLLRLRQCCCHLSLLK 935
Score = 50 (22.7 bits), Expect = 3.1e-45, Sum P(6) = 3.1e-45
Identities = 32/114 (28%), Positives = 50/114 (43%)
Query: 78 QEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANV---ASADY-EKISS 133
Q K+ PG S + S+ A +L+ QLQ +A+V A D +K+
Sbjct: 396 QRKVSSAPGVSKKGEPSDPAAQRV-FLTT-----QLQQRKSTLASVNIQALPDKGQKLFK 449
Query: 134 Q-QALKRTLPAFPQPHSLNTKSKSSV-ENMNSSQIRDTFGNAYHLAGPSTVNSK 185
Q Q L+ L A +TK KS+ E S+ I++T + HL P + +
Sbjct: 450 QIQELEEVLSALALSPEQDTKEKSNTQEPQQSNFIKETT-HPPHLVPPKPLQGQ 502
Score = 44 (20.5 bits), Expect = 4.3e-33, Sum P(5) = 4.3e-33
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 323 LQSKSKTEVLGNQKTEXXXXXXXXXXXXXXXXKVKETGESDDIKPVPEV 371
L+ KSK +V GN E K E ++ KP+P +
Sbjct: 221 LEMKSK-QVRGNVLREPSAFQVKSDSESHSVQKESEPPTEEETKPLPPI 268
>MGI|MGI:1921294 [details] [associations]
symbol:Ttf2 "transcription termination factor, RNA
polymerase II" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006353 "DNA-dependent transcription,
termination" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1921294 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0008270 GO:GO:0006397
GO:GO:0005681 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0006353 EMBL:AL669937
EMBL:AL669872 GeneTree:ENSGT00700000104545 KO:K15173 CTD:8458
HOGENOM:HOG000154708 HOVERGEN:HBG053179 OMA:WCGSIPW
OrthoDB:EOG4GMTWH EMBL:BC087733 EMBL:BC096625 IPI:IPI00112371
RefSeq:NP_001013044.2 UniGene:Mm.270961 ProteinModelPortal:Q5NC05
SMR:Q5NC05 IntAct:Q5NC05 STRING:Q5NC05 PhosphoSite:Q5NC05
PRIDE:Q5NC05 Ensembl:ENSMUST00000076941 GeneID:74044 KEGG:mmu:74044
UCSC:uc008qrb.2 NextBio:339618 Bgee:Q5NC05 Genevestigator:Q5NC05
GermOnline:ENSMUSG00000033222 Uniprot:Q5NC05
Length = 1138
Score = 253 (94.1 bits), Expect = 6.6e-45, Sum P(5) = 6.6e-45
Identities = 50/135 (37%), Positives = 83/135 (61%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
PL +V W R++LDEA +KN R Q + A C L+A+ RW ++GTPIQN++ D+YS +FL+
Sbjct: 701 PLLQVVWARIILDEAHNVKNPRVQTSIAVCKLQAQARWAVTGTPIQNNLLDMYSLMKFLR 760
Query: 566 YDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFID-GQPIINLPPKTI 624
P+ +S K + S+ G ++L + ++++LRRTK G+P++ LP +
Sbjct: 761 CSPF----DEFSLWKSQVDNGSMKGGERLSILTKSLLLRRTKDQLDSTGKPLVALPARRC 816
Query: 625 SLTKVDFSKEEWAFY 639
L ++ S++E A Y
Sbjct: 817 QLHRLKLSEDERAVY 831
Score = 161 (61.7 bits), Expect = 6.6e-45, Sum P(5) = 6.6e-45
Identities = 32/87 (36%), Positives = 52/87 (59%)
Query: 384 AAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIV 443
++GTL+VCPAS++ W E+E +V L + +YHG +R++ L+ YD+V+TTYS++
Sbjct: 617 SSGTLIVCPASLIHHWKNEVEKRVTSNR-LRIYLYHGPNRSRHAKVLSTYDIVITTYSLL 675
Query: 444 TNEVPKQPSVDEEEADEKNGETYGLSS 470
E+P + E E N G S+
Sbjct: 676 AKEIPT--TKQEGEVPGANLSVEGTSA 700
Score = 144 (55.7 bits), Expect = 6.6e-45, Sum P(5) = 6.6e-45
Identities = 35/62 (56%), Positives = 45/62 (72%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSK 326
P GL V LL HQK ALAW+L +E++ GGILADD GLGKT+++IALI +++ Q K
Sbjct: 539 PAGL-KVPLLLHQKQALAWLLWRESQKPQ--GGILADDMGLGKTLTMIALILTKKN-QQK 594
Query: 327 SK 328
SK
Sbjct: 595 SK 596
Score = 93 (37.8 bits), Expect = 6.6e-45, Sum P(5) = 6.6e-45
Identities = 41/165 (24%), Positives = 70/165 (42%)
Query: 745 ASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGG-GSPTDSPFADKSGILDN- 802
A E+ + CPA + V+ L+ C S D + G++ +
Sbjct: 868 AQEFGSSVSQGCPAADSQRPSTVHVLSQLLRLRQCCCHLSLLKSALDPTELESEGLVLSL 927
Query: 803 -EYISSKIRTVLDILHTQ--CELNTKCSIVEIHD--LAGSNGSSAVHSKSPIE-GP--IK 854
E +S+ + +D+ LN C E+ D + SS + I+ GP K
Sbjct: 928 EEQLSALTLSKVDVSEPSPTVSLNGTCFKAELFDDTRRSTKVSSLLAELEAIQKGPGSQK 987
Query: 855 SIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
S++ SQWT ML +V L ++ + Y +DG+++ R V+ FN
Sbjct: 988 SVIVSQWTSMLQVVALHLKKNRLTYATIDGSVNPKQRMDLVEAFN 1032
Score = 52 (23.4 bits), Expect = 6.6e-45, Sum P(5) = 6.6e-45
Identities = 17/52 (32%), Positives = 20/52 (38%)
Query: 129 EKISSQ-QALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGP 179
EK+ Q QAL+ L A TK K S + S I HL P
Sbjct: 417 EKLLKQIQALEDALSALALSPEQGTKEKCSAQEPEQSNITKAAAAPLHLVPP 468
Score = 52 (23.4 bits), Expect = 1.0e-40, Sum P(5) = 1.0e-40
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 665 NILLMLLRLRQACDHPLLVK 684
++L LLRLRQ C H L+K
Sbjct: 891 HVLSQLLRLRQCCCHLSLLK 910
>UNIPROTKB|H7C5K0 [details] [associations]
symbol:HLTF "Helicase-like transcription factor"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 PROSITE:PS51192 HGNC:HGNC:11099 EMBL:AC021059
ProteinModelPortal:H7C5K0 Ensembl:ENST00000467858 Bgee:H7C5K0
Uniprot:H7C5K0
Length = 425
Score = 424 (154.3 bits), Expect = 7.8e-45, Sum P(2) = 7.8e-45
Identities = 90/276 (32%), Positives = 146/276 (52%)
Query: 501 DYGC---GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDL 557
DYG PL + W RV+LDE I+N Q +A L ++RRW L+GTPIQNS+ DL
Sbjct: 1 DYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDL 60
Query: 558 YSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPII 617
+S FLK P+ + ++ TI+ P++ G ++LQ++++ I LRRTK + I G+P++
Sbjct: 61 WSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVL 120
Query: 618 NLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQAC 677
LP + + + + S EE Y+ ++++ + + GTV +YA++L +LLRLRQ C
Sbjct: 121 ELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQIC 180
Query: 678 DHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLET-----SSAICCVCSDPPEDSV 732
H L+ S G + + P ++ L+ +++ S C +C D V
Sbjct: 181 CHTYLLTNA-VSSNGPSAFSLGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPV 239
Query: 733 VTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 768
+T C HVFC C + I + P C+ + D
Sbjct: 240 ITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHED 275
Score = 81 (33.6 bits), Expect = 7.8e-45, Sum P(2) = 7.8e-45
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 853 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF-NTD 901
IKS+V SQ+T L L+E L + RLDG+M+ R +++ F NT+
Sbjct: 320 IKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNTE 369
>FB|FBgn0002542 [details] [associations]
symbol:lds "lodestar" species:7227 "Drosophila melanogaster"
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0006353 "DNA-dependent transcription,
termination" evidence=IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS;IDA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007143 "female
meiosis" evidence=IMP] [GO:0034454 "microtubule anchoring at
centrosome" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
EMBL:AE014297 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0007283 GO:GO:0007143 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0034454 GO:GO:0008094 GO:GO:0006353
GeneTree:ENSGT00700000104545 EMBL:X62629 PIR:A40580
RefSeq:NP_524850.2 UniGene:Dm.20310 ProteinModelPortal:P34739
SMR:P34739 DIP:DIP-20026N IntAct:P34739 MINT:MINT-947822
STRING:P34739 PaxDb:P34739 EnsemblMetazoa:FBtr0081758 GeneID:45894
KEGG:dme:Dmel_CG2684 CTD:45894 FlyBase:FBgn0002542
InParanoid:P34739 KO:K15173 OMA:QRHALAW OrthoDB:EOG47M0D4
PhylomeDB:P34739 GenomeRNAi:45894 NextBio:838462 Bgee:P34739
GermOnline:CG2684 Uniprot:P34739
Length = 1061
Score = 240 (89.5 bits), Expect = 2.2e-44, Sum P(5) = 2.2e-44
Identities = 52/144 (36%), Positives = 79/144 (54%)
Query: 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPY 569
V W R++LDEA ++NH++Q + A C LR K RW L+GTPIQN D+Y+ +FL+ P+
Sbjct: 595 VKWRRIILDEAHVVRNHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKFLRCSPF 654
Query: 570 AVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKV 629
T K I S G +L +++++MLRRTK + +LP K + L ++
Sbjct: 655 ----DDLHTWKKWIDNKSAGGQNRLNLLMKSLMLRRTKAQLQSDGKLNSLPNKELRLIEI 710
Query: 630 DFSKEEWAFYKKLESDSLKKFKAF 653
KEE Y+ + + S F F
Sbjct: 711 SLDKEEMNVYQTVMTYSRTLFAQF 734
Score = 159 (61.0 bits), Expect = 2.2e-44, Sum P(5) = 2.2e-44
Identities = 32/61 (52%), Positives = 41/61 (67%)
Query: 386 GTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
GTLVVCPAS+LRQW E+E KV + L+V ++HG +R L YD+V+TTY IV
Sbjct: 526 GTLVVCPASLLRQWESEVESKV-SRQKLTVCVHHGNNRETKGKYLRDYDIVVTTYQIVAR 584
Query: 446 E 446
E
Sbjct: 585 E 585
Score = 147 (56.8 bits), Expect = 2.2e-44, Sum P(5) = 2.2e-44
Identities = 38/76 (50%), Positives = 51/76 (67%)
Query: 253 ALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTIS 312
+LEDL P+V A P GL V+L+ HQK ALAWM +E R L GGILADD GLGKT++
Sbjct: 418 SLEDLPGPEVLAEDPVGL-KVSLMNHQKHALAWMSWRE-RKLP-RGGILADDMGLGKTLT 474
Query: 313 IIALIQMQRSLQSKSK 328
+I+ + ++ Q S+
Sbjct: 475 MISSVLACKNGQEMSE 490
Score = 86 (35.3 bits), Expect = 2.2e-44, Sum P(5) = 2.2e-44
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDR 902
K+IV SQWT +LD++ + L++ + L+GT+ + R V +FN DR
Sbjct: 910 KAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNRQDIVNEFN-DR 957
Score = 65 (27.9 bits), Expect = 2.2e-44, Sum P(5) = 2.2e-44
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 637 AFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
A+YK E KF A + +++ +IL++LLRLRQ C HP L+
Sbjct: 765 AYYKMHE-----KFARMAGSKKEVKSH-DILVLLLRLRQICCHPGLI 805
Score = 42 (19.8 bits), Expect = 1.8e-32, Sum P(5) = 1.8e-32
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 456 EEADEKNGETYGLSSEFSVNKKRKKI 481
+E E E+ SE NKKRK +
Sbjct: 486 QEMSEGKDESSDSDSEDDKNKKRKSV 511
>UNIPROTKB|I3L7V5 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 EMBL:CU468873 EMBL:AEMK01166609
EMBL:CU207228 Ensembl:ENSSSCT00000031433 Uniprot:I3L7V5
Length = 1147
Score = 259 (96.2 bits), Expect = 6.3e-44, Sum P(5) = 6.3e-44
Identities = 51/149 (34%), Positives = 88/149 (59%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
PL ++ W R++LDEA T+KN R Q + A C L+A+ RW ++GTPIQN++ D+YS +FL+
Sbjct: 709 PLLRIVWARIILDEAHTVKNPRVQTSMAVCKLQAQARWAVTGTPIQNNLLDMYSLLKFLR 768
Query: 566 YDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFID-GQPIINLPPKTI 624
P+ +S K + S G ++L + ++++LRRTK G+P++ LP +
Sbjct: 769 CSPF----DEFSLWKSQVDNGSKKGGERLNILTKSLLLRRTKDQLDSTGKPLVELPQRQF 824
Query: 625 SLTKVDFSKEEWAFYKKLESDSLKKFKAF 653
L ++ S++E Y L + S +++
Sbjct: 825 QLHRLKLSEDEETVYNVLFARSRSDLQSY 853
Score = 147 (56.8 bits), Expect = 6.3e-44, Sum P(5) = 6.3e-44
Identities = 25/62 (40%), Positives = 43/62 (69%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++CPAS++ W E++ +V + L V +YHG +R ++ L+ YD+V+TTYS++ E
Sbjct: 628 TLIICPASLIHHWKNEVQKRVCNNE-LRVYLYHGPNRDQNAKVLSMYDIVITTYSLLAKE 686
Query: 447 VP 448
+P
Sbjct: 687 IP 688
Score = 133 (51.9 bits), Expect = 6.3e-44, Sum P(5) = 6.3e-44
Identities = 38/78 (48%), Positives = 49/78 (62%)
Query: 253 ALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGIL--ADDQGLGKT 310
+LE A P GL V LL HQK ALAW+L +E++ GGIL ADD GLGKT
Sbjct: 531 SLESRPDETAVAEDPAGL-KVPLLLHQKQALAWLLWRESQKPP--GGILFPADDMGLGKT 587
Query: 311 ISIIALIQMQRSLQSKSK 328
+++IALI Q++ Q K+K
Sbjct: 588 LTMIALILTQKN-QEKNK 604
Score = 99 (39.9 bits), Expect = 6.3e-44, Sum P(5) = 6.3e-44
Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 822 LNTKCSIVEIHDLAGSNG--SSAVHSKSPIE---GPIKSIVFSQWTRMLDLVENSLNQHC 876
LN C VE+ D + SS + I G KS++ SQWT ML++V L +H
Sbjct: 959 LNGTCFKVELFDSMRQSTKISSLLAELEAIRRNSGSQKSVIVSQWTSMLEVVALHLKRHR 1018
Query: 877 IQYRRLDGTMSLPARDRAVKDFNT 900
+ Y +DG+++ R V+ FN+
Sbjct: 1019 VTYATIDGSVNPKQRMDLVEAFNS 1042
Score = 55 (24.4 bits), Expect = 6.3e-44, Sum P(5) = 6.3e-44
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 665 NILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCV 723
+IL LLRLRQ C H L+K D S + L + LS L +S + V
Sbjct: 900 HILSQLLRLRQCCCHLSLLKSA-LDPTELKSEGLVLSLEEQLSALTLSELHSSESSASV 957
>UNIPROTKB|F1SAY2 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR010666
Pfam:PF00176 Pfam:PF00271 Pfam:PF06839 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:CU468873
EMBL:AEMK01166609 EMBL:CU207228 Ensembl:ENSSSCT00000007376
Uniprot:F1SAY2
Length = 1169
Score = 259 (96.2 bits), Expect = 7.2e-44, Sum P(5) = 7.2e-44
Identities = 51/149 (34%), Positives = 88/149 (59%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
PL ++ W R++LDEA T+KN R Q + A C L+A+ RW ++GTPIQN++ D+YS +FL+
Sbjct: 731 PLLRIVWARIILDEAHTVKNPRVQTSMAVCKLQAQARWAVTGTPIQNNLLDMYSLLKFLR 790
Query: 566 YDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFID-GQPIINLPPKTI 624
P+ +S K + S G ++L + ++++LRRTK G+P++ LP +
Sbjct: 791 CSPF----DEFSLWKSQVDNGSKKGGERLNILTKSLLLRRTKDQLDSTGKPLVELPQRQF 846
Query: 625 SLTKVDFSKEEWAFYKKLESDSLKKFKAF 653
L ++ S++E Y L + S +++
Sbjct: 847 QLHRLKLSEDEETVYNVLFARSRSDLQSY 875
Score = 147 (56.8 bits), Expect = 7.2e-44, Sum P(5) = 7.2e-44
Identities = 25/62 (40%), Positives = 43/62 (69%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++CPAS++ W E++ +V + L V +YHG +R ++ L+ YD+V+TTYS++ E
Sbjct: 650 TLIICPASLIHHWKNEVQKRVCNNE-LRVYLYHGPNRDQNAKVLSMYDIVITTYSLLAKE 708
Query: 447 VP 448
+P
Sbjct: 709 IP 710
Score = 133 (51.9 bits), Expect = 7.2e-44, Sum P(5) = 7.2e-44
Identities = 38/78 (48%), Positives = 49/78 (62%)
Query: 253 ALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGIL--ADDQGLGKT 310
+LE A P GL V LL HQK ALAW+L +E++ GGIL ADD GLGKT
Sbjct: 553 SLESRPDETAVAEDPAGL-KVPLLLHQKQALAWLLWRESQKPP--GGILFPADDMGLGKT 609
Query: 311 ISIIALIQMQRSLQSKSK 328
+++IALI Q++ Q K+K
Sbjct: 610 LTMIALILTQKN-QEKNK 626
Score = 99 (39.9 bits), Expect = 7.2e-44, Sum P(5) = 7.2e-44
Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 822 LNTKCSIVEIHDLAGSNG--SSAVHSKSPIE---GPIKSIVFSQWTRMLDLVENSLNQHC 876
LN C VE+ D + SS + I G KS++ SQWT ML++V L +H
Sbjct: 981 LNGTCFKVELFDSMRQSTKISSLLAELEAIRRNSGSQKSVIVSQWTSMLEVVALHLKRHR 1040
Query: 877 IQYRRLDGTMSLPARDRAVKDFNT 900
+ Y +DG+++ R V+ FN+
Sbjct: 1041 VTYATIDGSVNPKQRMDLVEAFNS 1064
Score = 55 (24.4 bits), Expect = 7.2e-44, Sum P(5) = 7.2e-44
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 665 NILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCV 723
+IL LLRLRQ C H L+K D S + L + LS L +S + V
Sbjct: 922 HILSQLLRLRQCCCHLSLLKSA-LDPTELKSEGLVLSLEEQLSALTLSELHSSESSASV 979
>WB|WBGene00020742 [details] [associations]
symbol:T23H2.3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104545 KO:K15173 EMBL:FO081319
RefSeq:NP_001032980.2 ProteinModelPortal:P91494 PaxDb:P91494
EnsemblMetazoa:T23H2.3 GeneID:172347 KEGG:cel:CELE_T23H2.3
UCSC:T23H2.3 CTD:172347 WormBase:T23H2.3 HOGENOM:HOG000017261
InParanoid:P91494 OMA:GHNYTSI NextBio:875145 Uniprot:P91494
Length = 1001
Score = 225 (84.3 bits), Expect = 1.7e-43, Sum P(5) = 1.7e-43
Identities = 56/163 (34%), Positives = 85/163 (52%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
PLA+V W RV+LDEA IKN +Q ++A C L + RWCLSGTPI N++ DLYS RFL+
Sbjct: 544 PLARVAWSRVILDEAHAIKNRLSQCSKAVCRLSSFSRWCLSGTPIHNNLWDLYSLVRFLR 603
Query: 566 YDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGT--FIDGQPIINLPPKT 623
P + F++ +P+ ++ + + +MLRRTK + + I+NL K
Sbjct: 604 I-PLFGDRKFWAESIMPMKTGMAD---RVNLLTKNLMLRRTKDQQCALTNKKIVNLKEKK 659
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANI 666
I + +++ +E Y + + K K Q Y I
Sbjct: 660 IEIHELEMVGDEANGYAIMMEAAQKLVKQIVTNTDDIQKYGQI 702
Score = 164 (62.8 bits), Expect = 1.7e-43, Sum P(5) = 1.7e-43
Identities = 32/85 (37%), Positives = 58/85 (68%)
Query: 383 PAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTY 440
P+ GTL++ PAS++ QW E+ ++ + LSV ++HG + + +P ELA+YDVV+TTY
Sbjct: 445 PSNGTLIIAPASLIHQWEAEINRRL-ESDLLSVFMFHGTKKQRQIEPKELARYDVVITTY 503
Query: 441 SIVTNEVPKQP---SVDEEEADEKN 462
++ NE+ ++ S EE++D+++
Sbjct: 504 TLAANELMEKKAAGSKKEEDSDDES 528
Score = 141 (54.7 bits), Expect = 1.7e-43, Sum P(5) = 1.7e-43
Identities = 37/85 (43%), Positives = 53/85 (62%)
Query: 246 ERLIYQAALEDLNQP-KVEAT-LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILAD 303
+RL+ Q A P + + T PDGLL V L+ HQK L W++ +E + H GGILAD
Sbjct: 342 DRLMQQLADATHTIPAETDLTDTPDGLL-VELMPHQKAGLRWLVWREGQP-HS-GGILAD 398
Query: 304 DQGLGKTISIIALIQMQRSLQSKSK 328
D GLGKT+S+++LI Q++ + K
Sbjct: 399 DMGLGKTLSMLSLIVHQKAARRARK 423
Score = 84 (34.6 bits), Expect = 1.7e-43, Sum P(5) = 1.7e-43
Identities = 30/81 (37%), Positives = 43/81 (53%)
Query: 656 AGTVN-QNYANILLMLLRLRQACDHPLLVKE-YDFDSVGKISGEMAKRLPRDMLIDLLSR 713
AG N QN + ILL+L+RLRQAC H + K D D+ KI+G + L +L+ +
Sbjct: 726 AGNSNFQNMSCILLLLMRLRQACVHFHITKSGMDLDAF-KINGGDDEDADMKELENLMEK 784
Query: 714 LETSSAICCVCSDPPEDSVVT 734
T + + SD E+ V T
Sbjct: 785 --TMADLTIADSDNDEEGVDT 803
Score = 74 (31.1 bits), Expect = 1.7e-43, Sum P(5) = 1.7e-43
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 849 IEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDR 902
+E K ++ SQWT +L+LVE + Y + G + + R V FN ++
Sbjct: 836 LEKKEKVVIVSQWTSVLNLVEKHIQAGGHNYTSITGQVLVKDRQERVDSFNQEK 889
Score = 44 (20.5 bits), Expect = 2.0e-40, Sum P(5) = 2.0e-40
Identities = 15/76 (19%), Positives = 34/76 (44%)
Query: 782 DDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVE----IHDLAGS 837
++G + + P + I + ++IS K+ L+++ E K IV + +L
Sbjct: 798 EEGVDTNKEEPKQPPTRIFEPDFISCKMAKTLEVVREILEKKEKVVIVSQWTSVLNLVEK 857
Query: 838 NGSSAVHSKSPIEGPI 853
+ + H+ + I G +
Sbjct: 858 HIQAGGHNYTSITGQV 873
Score = 37 (18.1 bits), Expect = 1.6e-19, Sum P(4) = 1.6e-19
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 788 PTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDL 834
P + AD+ +L + + + L + +N K +EIH+L
Sbjct: 619 PMKTGMADRVNLLTKNLMLRRTKDQQCALTNKKIVNLKEKKIEIHEL 665
>ASPGD|ASPL0000056426 [details] [associations]
symbol:AN0044 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009650 "UV
protection" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
SMART:SM00910 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:BN001308 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000002 KO:K15505 RefSeq:XP_657648.1
ProteinModelPortal:Q5BHD6 STRING:Q5BHD6
EnsemblFungi:CADANIAT00002711 GeneID:2875817 KEGG:ani:AN0044.2
HOGENOM:HOG000040492 OMA:MDPWWSP OrthoDB:EOG4J40R2 Uniprot:Q5BHD6
Length = 1202
Score = 370 (135.3 bits), Expect = 4.5e-43, Sum P(4) = 4.5e-43
Identities = 96/288 (33%), Positives = 154/288 (53%)
Query: 505 GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFL 564
G L V +FRV+LDEA IKN R++ ARAC L+A RW L+GTPI N ++DL+S RFL
Sbjct: 641 GNLFSVDFFRVILDEAHIIKNRRSKTARACYDLKATHRWVLTGTPIVNRLEDLFSLVRFL 700
Query: 565 KYDPYAVYKSFYST-IKIPI-SRNSLHGYKKLQAVLRAIMLRRTKGTFI-DGQPIINLPP 621
+ +P+ + SF+ T I P S+ + +Q VL ++LRRTK +G+P++ LP
Sbjct: 701 RVEPWNNF-SFWKTFITAPFESKEVVRAISVVQTVLEPLVLRRTKSMKTPEGEPLVPLPK 759
Query: 622 KTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPL 681
+TI + KV+ ++E Y + + + + F + AGT+ ++Y+ I LLRLRQ C HP+
Sbjct: 760 RTIRIEKVELIEQEREIYNHIYTRAKQTFNSNVAAGTLLKSYSTIFAQLLRLRQTCCHPI 819
Query: 682 LVKEYDF---DSVGKISGEMAKRLPRDM-LIDLLSRLETSSAICCVCSDPPEDSVVTMCG 737
L + + + + L DM L +L++R +++ ++PP+ S+
Sbjct: 820 LTRNKAIVADEEDAAAAADQDSDLKDDMDLQELINRFTATTSDAESSNEPPDPSM-KFTA 878
Query: 738 HVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSK---TTLKNCVSD 782
H Q +E G+ CP C E+ D + + K C+ D
Sbjct: 879 HAL-RQIQTES-AGE---CPI--CSEEPMIDPAVTACWHSACKGCLKD 919
Score = 151 (58.2 bits), Expect = 6.0e-19, Sum P(4) = 6.0e-19
Identities = 60/198 (30%), Positives = 89/198 (44%)
Query: 711 LSRLETSSA-ICCVCSDPPE-DSVVTMCGHVFCYQCASEYITGDDNMCPAPRC---KEQL 765
L +++T SA C +CS+ P D VT C H C C +YI + PRC + L
Sbjct: 881 LRQIQTESAGECPICSEEPMIDPAVTACWHSACKGCLKDYIQHQRDKGVQPRCFSCRADL 940
Query: 766 GADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTK 825
+F ++ +PT+ + G DN Y SS Q +
Sbjct: 941 NPQDIFEVVRYQS-----PNTTPTEQTPSSIGG--DNVYSSS-----------QPPPPPR 982
Query: 826 CSIVEIHDLAGSNGSSA-VHSKSP--IEGPI--KSIVFSQWTRMLDLVENSLNQHCIQYR 880
S+ I+ L+ S +SA +H+ + P KS+VFSQ+T LDL+ L + I +
Sbjct: 983 ISLRRINPLSPSAHTSAKIHALLAHLVRVPAGTKSVVFSQFTSFLDLIGPQLTKAGISFV 1042
Query: 881 RLDGTMSLPARDRAVKDF 898
RLDGTM+ AR + F
Sbjct: 1043 RLDGTMAQKARAEVLAQF 1060
Score = 109 (43.4 bits), Expect = 4.5e-43, Sum P(4) = 4.5e-43
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 295 HCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGN 334
HCLGGILAD+ GLGKTI +++L+ R+L T+ LGN
Sbjct: 509 HCLGGILADEMGLGKTIEMLSLVHSHRNLPP---TQSLGN 545
Score = 82 (33.9 bits), Expect = 4.5e-43, Sum P(4) = 4.5e-43
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL------AKYDVVLTTY 440
TLVV P S+L QW E K ++ VL+Y+G + + E+ A +++LT+Y
Sbjct: 561 TLVVAPMSLLAQWEGEAL-KASRNGSMKVLMYYGNEKNVNLREMCSAGNAAAPNMILTSY 619
Query: 441 SIVTNE 446
+V +E
Sbjct: 620 GVVMSE 625
Score = 73 (30.8 bits), Expect = 4.5e-43, Sum P(4) = 4.5e-43
Identities = 26/96 (27%), Positives = 44/96 (45%)
Query: 197 DDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDER-LIYQAALE 255
DD+I +L ++ M + G +D SG + + D+ +Y+ A
Sbjct: 363 DDEIKKQRKEGLLRAAEMADQEAKKLAKSGNTD----SGDEEPAELEQDQLDALYKKAQS 418
Query: 256 -DLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
D + P+ + P +++L K+QK AL WML KE
Sbjct: 419 FDFSMPEAQ---PPSSFAMDLRKYQKQALYWMLSKE 451
>UNIPROTKB|Q9UNY4 [details] [associations]
symbol:TTF2 "Transcription termination factor 2"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=TAS] [GO:0008023
"transcription elongation factor complex" evidence=TAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=TAS] [GO:0006353
"DNA-dependent transcription, termination" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 GO:GO:0006355 GO:GO:0008380
GO:GO:0003677 GO:GO:0008270 GO:GO:0006397 GO:GO:0005681
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0008094 GO:GO:0008023 GO:GO:0006369
CleanEx:HS_TTF2 EMBL:AL445231 EMBL:AL391476 KO:K15173 EMBL:AF073771
EMBL:AF080255 EMBL:AK291017 EMBL:BC030058 IPI:IPI00290812
IPI:IPI00640904 RefSeq:NP_003585.3 UniGene:Hs.486818
ProteinModelPortal:Q9UNY4 SMR:Q9UNY4 IntAct:Q9UNY4 MINT:MINT-272557
STRING:Q9UNY4 PhosphoSite:Q9UNY4 DMDM:73920148 PaxDb:Q9UNY4
PRIDE:Q9UNY4 Ensembl:ENST00000369466 Ensembl:ENST00000427271
GeneID:8458 KEGG:hsa:8458 UCSC:uc001egx.1 UCSC:uc001egy.3 CTD:8458
GeneCards:GC01P117602 H-InvDB:HIX0000933 HGNC:HGNC:12398
HPA:HPA005776 MIM:604718 neXtProt:NX_Q9UNY4 PharmGKB:PA37063
HOGENOM:HOG000154708 HOVERGEN:HBG053179 InParanoid:Q9UNY4
OMA:WCGSIPW OrthoDB:EOG4GMTWH PhylomeDB:Q9UNY4 ChiTaRS:TTF2
GenomeRNAi:8458 NextBio:31654 Bgee:Q9UNY4 Genevestigator:Q9UNY4
GermOnline:ENSG00000116830 Uniprot:Q9UNY4
Length = 1162
Score = 243 (90.6 bits), Expect = 8.2e-43, Sum P(5) = 8.2e-43
Identities = 61/218 (27%), Positives = 106/218 (48%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
PL ++ W R++LDEA +KN R Q + A C L+A RW ++GTPIQN++ D+YS +FL+
Sbjct: 725 PLLRIAWARIILDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLR 784
Query: 566 YDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFID-GQPIINLPPKTI 624
P+ + + S + S G ++L + ++++LRRTK G+P++ LP +
Sbjct: 785 CSPFDEFNLWRSQV----DNGSKKGGERLSILTKSLLLRRTKDQLDSTGRPLVILPQRKF 840
Query: 625 SLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK 684
L + S++E Y + S +++ N + ++ ++P
Sbjct: 841 QLHHLKLSEDEETVYNVFFARSRSALQSYLKRHESRGNQSG---------RSPNNPFSRV 891
Query: 685 EYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICC 722
+F S E A PR + +LS+L CC
Sbjct: 892 ALEFGSEEPRHSEAADS-PRSSTVHILSQLLRLRQCCC 928
Score = 156 (60.0 bits), Expect = 8.2e-43, Sum P(5) = 8.2e-43
Identities = 33/85 (38%), Positives = 48/85 (56%)
Query: 386 GTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
GTL++CPAS++ W E+E +V + L V +YHG +R L+ YD+V+TTYS+V
Sbjct: 643 GTLIICPASLIHHWKNEVEKRV-NSNKLRVYLYHGPNRDSRARVLSTYDIVITTYSLVAK 701
Query: 446 EVPKQPSVDEEEADEKNGETYGLSS 470
E+P E E N G S+
Sbjct: 702 EIPTNKQ--EAEIPGANLNVEGTST 724
Score = 155 (59.6 bits), Expect = 8.2e-43, Sum P(5) = 8.2e-43
Identities = 49/127 (38%), Positives = 67/127 (52%)
Query: 210 PSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQA------ALEDLNQPKVE 263
P + KS GG S YR G ++ V ++ +A +LE V
Sbjct: 502 PVGSLELKSACQVTAGGSSQ-CYR-GHTNQDHVHAVWKITSEAIGQLHRSLESCPGETVV 559
Query: 264 ATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSL 323
A P GL V LL HQK ALAW+L +E++ GGILADD GLGKT+++IALI Q++
Sbjct: 560 AEDPAGL-KVPLLLHQKQALAWLLWRESQKPQ--GGILADDMGLGKTLTMIALILTQKNQ 616
Query: 324 QSKSKTE 330
+ K + E
Sbjct: 617 EKKEEKE 623
Score = 92 (37.4 bits), Expect = 8.2e-43, Sum P(5) = 8.2e-43
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDR 902
KS++ SQWT ML +V L +H + Y +DG+++ R V+ FN R
Sbjct: 1011 KSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVEAFNHSR 1059
Score = 56 (24.8 bits), Expect = 4.2e-23, Sum P(5) = 4.2e-23
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 656 AGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGE-MAKRLPRDMLIDLLSRL 714
A + + +IL LLRLRQ C H L+K D + ++ GE + L + LS L
Sbjct: 906 ADSPRSSTVHILSQLLRLRQCCCHLSLLKSA-LDPM-ELKGEGLVLSLEEQLSALTLSEL 963
Query: 715 ETS 717
S
Sbjct: 964 RDS 966
Score = 50 (22.7 bits), Expect = 1.8e-32, Sum P(4) = 1.8e-32
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 207 RILPSSLMHGKSVSMTQFGGPSDLAYRSGSADE 239
++LP ++ S+S Q GGP + Y + A E
Sbjct: 260 QLLPQNVHSHNSISKPQKGGPLNKEYTNWEAKE 292
Score = 44 (20.5 bits), Expect = 8.0e-20, Sum P(4) = 8.0e-20
Identities = 23/102 (22%), Positives = 43/102 (42%)
Query: 192 YVKKNDDDIMMYEGNRIL-PSSLMHGKSVSMTQFGGPSDLA---YRSGSADERA--VGGD 245
++ K+D G I+ P+SL+H + + + L Y + D RA +
Sbjct: 630 WLSKDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARVLSTY 689
Query: 246 ERLI--YQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAW 285
+ +I Y +++ K EA +P L+V + +AW
Sbjct: 690 DIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAW 731
Score = 38 (18.4 bits), Expect = 8.2e-43, Sum P(5) = 8.2e-43
Identities = 14/59 (23%), Positives = 21/59 (35%)
Query: 129 EKISSQ-QALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKG 186
+K+ Q Q L+ L T KS+ + S T HL P + +G
Sbjct: 441 QKLIKQIQELEEVLSGLTLSPEQGTNEKSNSQVPQQSHFTKTTTGPPHLVPPQPLPRRG 499
>UNIPROTKB|E2RGF7 [details] [associations]
symbol:TTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR010666 Pfam:PF00176 Pfam:PF00271
Pfam:PF06839 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0008270 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00700000104545 OMA:WCGSIPW EMBL:AAEX03011013
Ensembl:ENSCAFT00000015640 Uniprot:E2RGF7
Length = 1150
Score = 247 (92.0 bits), Expect = 1.4e-42, Sum P(6) = 1.4e-42
Identities = 49/153 (32%), Positives = 89/153 (58%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
PL ++ W R++LDEA ++N R Q + A C L+A RW ++GTPIQN++ D+YS +FL+
Sbjct: 711 PLLRIVWARIILDEAHCVRNPRVQTSMAVCKLQAHARWAVTGTPIQNTLLDMYSLLKFLR 770
Query: 566 YDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFID-GQPIINLPPKTI 624
P+ ++ + K + S G ++L + ++++LRRTK G+P++ LP +
Sbjct: 771 CSPFDDFQLW----KSQVDNGSKKGGERLSILTKSLLLRRTKDQLDSTGKPLVMLPQRQF 826
Query: 625 SLTKVDFSKEEWAFYKKLESDSLKKFKAFADAG 657
+ ++ S++E Y L + S +++ AG
Sbjct: 827 HVHRLKLSEDEENVYSVLLAKSRSALQSYLKAG 859
Score = 153 (58.9 bits), Expect = 1.4e-42, Sum P(6) = 1.4e-42
Identities = 36/64 (56%), Positives = 47/64 (73%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSK 326
P GL V LL HQK ALAW+L +E++ H GGILADD GLGKT+++IALI Q++ + K
Sbjct: 547 PAGL-KVPLLLHQKQALAWLLWRESQKPH--GGILADDMGLGKTLTMIALILTQKN-REK 602
Query: 327 SKTE 330
+K E
Sbjct: 603 TKEE 606
Score = 149 (57.5 bits), Expect = 1.4e-42, Sum P(6) = 1.4e-42
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 386 GTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
GTL++CPAS++ W E+ +V L V +YHG +R + L+ YD+V+TTY+++
Sbjct: 627 GTLIICPASLIHHWKNEVMKRVSSNT-LRVCLYHGPNRDQRAKVLSTYDIVITTYNLLAK 685
Query: 446 EVPKQ 450
E+P Q
Sbjct: 686 EIPTQ 690
Score = 82 (33.9 bits), Expect = 1.4e-42, Sum P(6) = 1.4e-42
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDR 902
G KS++ SQWT ML +V L + + Y ++G++ R V+ FN+ R
Sbjct: 996 GSQKSVIVSQWTSMLQIVAWHLKKRGLTYATINGSVRPKQRMDLVEAFNSSR 1047
Score = 50 (22.7 bits), Expect = 1.4e-42, Sum P(6) = 1.4e-42
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 666 ILLMLLRLRQACDHPLLVK 684
+L LLRLRQ C H L+K
Sbjct: 904 LLTRLLRLRQCCCHLSLLK 922
Score = 40 (19.1 bits), Expect = 1.4e-42, Sum P(6) = 1.4e-42
Identities = 24/110 (21%), Positives = 41/110 (37%)
Query: 78 QEKLQMLPGFSDDHQMSNGQADDSHYLSGN--KNVGQLQTVNPRIANVASADYEKISSQQ 135
Q K G S + S+ QA YL+ + L++VN I + + + Q
Sbjct: 376 QRKTPPATGGSRKVEPSD-QAAQRVYLTAQLRQKKSTLKSVN--IQALPDKGQKLLKQIQ 432
Query: 136 ALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSK 185
L+ L A +T KS+ + + I + HL P + +
Sbjct: 433 ELEEALGALALSPEPDTNEKSNTQVLQQKNITKATTDPPHLVPPKPLQGE 482
Score = 37 (18.1 bits), Expect = 9.0e-20, Sum P(4) = 9.0e-20
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 420 GGSRTKDPVELAKYDVVLT 438
GGSR +P + A V LT
Sbjct: 384 GGSRKVEPSDQAAQRVYLT 402
>ASPGD|ASPL0000065871 [details] [associations]
symbol:AN7538 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:AACD01000129 EMBL:BN001304 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
OrthoDB:EOG44XNQX RefSeq:XP_680807.1 ProteinModelPortal:Q5AVZ2
EnsemblFungi:CADANIAT00000644 GeneID:2869681 KEGG:ani:AN7538.2
HOGENOM:HOG000215811 OMA:FMKRRTK Uniprot:Q5AVZ2
Length = 1132
Score = 291 (107.5 bits), Expect = 3.7e-41, Sum P(4) = 3.7e-41
Identities = 73/191 (38%), Positives = 104/191 (54%)
Query: 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPY 569
V W+R++LDEA TIKN + +A +L A+ RWCLSGTP+QN++D+L S RFL+ PY
Sbjct: 495 VYWYRIILDEAHTIKNRNAKATQAAYALDAEYRWCLSGTPMQNNLDELQSLIRFLRIKPY 554
Query: 570 AVYKSFYSTIKIPIS--RNSLHGYKKLQAVLRAIMLRRTK-----------GTFIDGQ-- 614
++ I P++ R L ++LQ VL+A M RRTK G DG+
Sbjct: 555 NDLANWKDQITRPLANGRGGL-AIERLQVVLKAFMKRRTKDVLKLNANLKPGEEADGEKK 613
Query: 615 -PIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRL 673
P + + + VDF E FY++LE + + G +YA L +LLRL
Sbjct: 614 NPGFQIVKREVVKVAVDFMPGEKNFYERLEQRTDNSLEKMM--GDSKIDYAGALTLLLRL 671
Query: 674 RQACDHPLLVK 684
RQ C+HP LV+
Sbjct: 672 RQCCNHPDLVR 682
Score = 146 (56.5 bits), Expect = 3.7e-41, Sum P(4) = 3.7e-41
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TLVV P ++++QW E++ KV L VL+YHG +R K L YDVV+TTY +T+E
Sbjct: 420 TLVVAPLALIKQWESEIKTKVEPSHRLRVLVYHGNARAKATDSLDDYDVVITTYGTLTSE 479
Score = 102 (41.0 bits), Expect = 3.7e-41, Sum P(4) = 3.7e-41
Identities = 29/69 (42%), Positives = 37/69 (53%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLH-------CL--GGILADDQGLGKTISIIALIQMQR 321
L V LL HQ+ + WM KE SL L GGILADD GLGKT+ IAL+ +
Sbjct: 321 LRVQLLPHQRQGVNWMCAKEIGSLKPRKEEKGVLPKGGILADDMGLGKTVQAIALMLTNQ 380
Query: 322 SLQSKSKTE 330
+ S+ +
Sbjct: 381 KPKDGSRRQ 389
Score = 82 (33.9 bits), Expect = 3.7e-41, Sum P(4) = 3.7e-41
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 850 EGP-IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDRE----V 904
E P K IVFS +T MLD +E L++ I Y R DG+M R+ +++ R +
Sbjct: 912 EAPDFKFIVFSVFTSMLDKIEPFLSRAGIGYARYDGSMRNDLREASLEKLRNHRGTRVLL 971
Query: 905 CSL 907
CSL
Sbjct: 972 CSL 974
Score = 41 (19.5 bits), Expect = 2.7e-24, Sum P(3) = 2.7e-24
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 444 TNEVPKQPSVDEEEADEKNGET 465
TNE +Q DE++ + ET
Sbjct: 284 TNETDEQEVEDEKDGSDAGSET 305
Score = 41 (19.5 bits), Expect = 2.7e-24, Sum P(3) = 2.7e-24
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 305 QGLGKTISIIALIQMQRSLQSKSKTEV 331
+GL K+ ++A + + + +S+ KT+V
Sbjct: 414 KGLSKSTLVVAPLALIKQWESEIKTKV 440
Score = 39 (18.8 bits), Expect = 4.4e-24, Sum P(3) = 4.4e-24
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 454 DEEEA-DEKNGETYGLSSE 471
DE+E DEK+G G +E
Sbjct: 288 DEQEVEDEKDGSDAGSETE 306
>UNIPROTKB|D4A1K7 [details] [associations]
symbol:Ttf2 "Protein Ttf2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR002464
InterPro:IPR010666 Pfam:PF00176 Pfam:PF06839 PROSITE:PS00690
RGD:1309145 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI00782268 Ensembl:ENSRNOT00000056142 ArrayExpress:D4A1K7
Uniprot:D4A1K7
Length = 950
Score = 255 (94.8 bits), Expect = 5.7e-40, Sum P(4) = 5.7e-40
Identities = 50/135 (37%), Positives = 84/135 (62%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
PL +V W R++LDEA +KN R Q + A C L+A+ RW ++GTPIQN++ D+YS +FL+
Sbjct: 705 PLLQVVWARIILDEAHNVKNPRVQTSIAVCKLQAQARWAVTGTPIQNNLLDMYSLMKFLR 764
Query: 566 YDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFID-GQPIINLPPKTI 624
P+ +S K + S+ G ++L + ++++LRRTK G+P++ LP ++
Sbjct: 765 CSPF----DEFSLWKSQVDNGSMKGGERLSILTKSLLLRRTKDQLDSTGKPLVPLPARSC 820
Query: 625 SLTKVDFSKEEWAFY 639
L ++ S++E A Y
Sbjct: 821 QLHRLKLSEDERAVY 835
Score = 157 (60.3 bits), Expect = 5.7e-40, Sum P(4) = 5.7e-40
Identities = 27/65 (41%), Positives = 44/65 (67%)
Query: 384 AAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIV 443
+ GTL+VCPAS++ W E+E +V + L + +YHG +R + L+ YD+V+TTYS++
Sbjct: 621 STGTLIVCPASLIHHWKNEIEKRV-NSNKLRIYLYHGPNRIQHAKVLSTYDIVITTYSLL 679
Query: 444 TNEVP 448
E+P
Sbjct: 680 AKEIP 684
Score = 144 (55.7 bits), Expect = 5.7e-40, Sum P(4) = 5.7e-40
Identities = 35/62 (56%), Positives = 45/62 (72%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSK 326
P GL V LL HQK ALAW+L +E++ GGILADD GLGKT+++IALI +++ Q K
Sbjct: 543 PAGL-KVPLLLHQKQALAWLLWRESQKPQ--GGILADDMGLGKTLTMIALILTKKN-QQK 598
Query: 327 SK 328
SK
Sbjct: 599 SK 600
Score = 52 (23.4 bits), Expect = 5.7e-40, Sum P(4) = 5.7e-40
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 665 NILLMLLRLRQACDHPLLVK 684
++L LLRLRQ C H L+K
Sbjct: 895 HVLSQLLRLRQCCCHLSLLK 914
Score = 40 (19.1 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 21/102 (20%), Positives = 42/102 (41%)
Query: 192 YVKKNDDDIMMYEGNRIL-PSSLMHGKSVSMTQFGGPSDLA---YRSGSADERA--VGGD 245
++ KND + G I+ P+SL+H + + + L Y + + A +
Sbjct: 610 WLSKNDSSVFTSTGTLIVCPASLIHHWKNEIEKRVNSNKLRIYLYHGPNRIQHAKVLSTY 669
Query: 246 ERLI--YQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAW 285
+ +I Y +++ K E +P LSV + + + W
Sbjct: 670 DIVITTYSLLAKEIPTAKHEGEVPGAKLSVEGISAPLLQVVW 711
>TAIR|locus:2196115 [details] [associations]
symbol:AT1G02670 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006281 "DNA repair"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K15083 IPI:IPI00540835
RefSeq:NP_171767.1 UniGene:At.51462 ProteinModelPortal:F4HXL1
SMR:F4HXL1 PRIDE:F4HXL1 EnsemblPlants:AT1G02670.1 GeneID:839532
KEGG:ath:AT1G02670 OMA:THITFAR Uniprot:F4HXL1
Length = 678
Score = 256 (95.2 bits), Expect = 1.9e-39, Sum P(4) = 1.9e-39
Identities = 68/190 (35%), Positives = 101/190 (53%)
Query: 500 IDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYS 559
+D PL + W R+++DEA IKN ++ A+A +L A RW LSGTP+QN +D+LYS
Sbjct: 257 VDETMSPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFALEATYRWALSGTPLQNDVDELYS 316
Query: 560 Y--FRFLKYDPYAVYKSF-YSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPI 616
+ FL + Y+ Y SF + I +RN ++ ++ +L + I+ P
Sbjct: 317 LVSYSFLNFF-YSTYASFAFRHTHITFARNVT-----VKFLIGGNILPLSIPVRIENVPA 370
Query: 617 INLPPKTISL--TKVD-FSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRL 673
+ + SL + D S E FY+ L S F + AGT+ NYA+I +L+RL
Sbjct: 371 VLIMQINTSLGGKRRDALSVVEADFYESLYKVSKTTFDGYIQAGTLMNNYAHIFGLLIRL 430
Query: 674 RQACDHPLLV 683
RQA DHP LV
Sbjct: 431 RQAVDHPYLV 440
Score = 127 (49.8 bits), Expect = 1.9e-39, Sum P(4) = 1.9e-39
Identities = 32/73 (43%), Positives = 39/73 (53%)
Query: 384 AAG-TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442
A G TLV+ P L QW E+ ++ + VL YHG R K+ +L YD VLTT I
Sbjct: 188 AVGHTLVLVPPVALSQWLDEIS-RLTSPGSTRVLQYHGPKRDKNVQKLMNYDFVLTTSPI 246
Query: 443 VTNEVPKQPSVDE 455
V NE K VDE
Sbjct: 247 VENEYRKDEGVDE 259
Score = 117 (46.2 bits), Expect = 1.9e-39, Sum P(4) = 1.9e-39
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTE 330
L + LLK+QK LAW +E ++ GGILAD+ G+GKTI I+L+ +R + E
Sbjct: 130 LIIPLLKYQKEFLAWATIQELSAVR--GGILADEMGMGKTIQAISLVLARREVDRAKSRE 187
Query: 331 VLGN 334
+G+
Sbjct: 188 AVGH 191
Score = 93 (37.8 bits), Expect = 1.9e-39, Sum P(4) = 1.9e-39
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD 901
K+IVFSQ+T LDL+ +L + + +L G+MS A+D A+K+F +
Sbjct: 527 KAIVFSQFTSFLDLISYALGKSGVSCVQLVGSMSKAAKDAALKNFKEE 574
>FB|FBgn0037531 [details] [associations]
symbol:CG10445 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000381
GeneTree:ENSGT00700000104545 FlyBase:FBgn0037531 GenomeRNAi:40938
NextBio:821377 RefSeq:NP_001246974.1 RefSeq:NP_649751.2
UniGene:Dm.24034 ProteinModelPortal:Q9VHY2 IntAct:Q9VHY2
EnsemblMetazoa:FBtr0300685 EnsemblMetazoa:FBtr0304704 GeneID:40938
KEGG:dme:Dmel_CG10445 UCSC:CG10445-RA InParanoid:Q9VHY2 OMA:NLNVANH
OrthoDB:EOG40ZPCJ Bgee:Q9VHY2 Uniprot:Q9VHY2
Length = 945
Score = 220 (82.5 bits), Expect = 4.7e-39, Sum P(5) = 4.7e-39
Identities = 56/169 (33%), Positives = 85/169 (50%)
Query: 502 YG-CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSY 560
YG PL V W RV+LDEA I+N +T + C LRA W L+GTP+QN D+++
Sbjct: 435 YGNTSPLFAVYWNRVILDEAHIIRNSKTNCCNSVCQLRAHCHWALTGTPVQNRGVDVFAL 494
Query: 561 FRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLP 620
RF+ + + + + S+ G+++L +++ +MLRRTK + LP
Sbjct: 495 LRFVNVPNFQDLQQWKKNLN-----ESMLGHRRLNFIIKPLMLRRTKQKLQASGDMPALP 549
Query: 621 PKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFA---DAGTVNQNYANI 666
I L V SK E A Y+ L + S K F F + G + NY ++
Sbjct: 550 SLKIELICVQLSKTEMAVYQILSAISKKIFTQFLLQREKGNSDLNYYSL 598
Score = 153 (58.9 bits), Expect = 4.7e-39, Sum P(5) = 4.7e-39
Identities = 31/68 (45%), Positives = 47/68 (69%)
Query: 383 PAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK-YDVVLTTYS 441
P+A TLVVCP SV+ QWA E+ KV A + VL +HG +R + +E + YD+V+T+Y+
Sbjct: 368 PSANTLVVCPMSVMCQWAHEVASKVAQNA-IRVLTFHGPNRHEIGIEAFRSYDLVITSYN 426
Query: 442 IVTNEVPK 449
+V NE+ +
Sbjct: 427 LVVNELKR 434
Score = 137 (53.3 bits), Expect = 4.7e-39, Sum P(5) = 4.7e-39
Identities = 30/61 (49%), Positives = 40/61 (65%)
Query: 270 LLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKT 329
LL V LLKHQ+ L WM +E + + GGILADD GLGKT+S+IALI +++ +
Sbjct: 204 LLLVRLLKHQQSCLKWMQFRERQKIS--GGILADDMGLGKTLSMIALILASEETKNRKRE 261
Query: 330 E 330
E
Sbjct: 262 E 262
Score = 67 (28.6 bits), Expect = 4.7e-39, Sum P(5) = 4.7e-39
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAV--KDFNTDRE 903
K IV SQW L +V L + + LD L A++R + +DFN + E
Sbjct: 789 KIIVTSQWVSYLAIVRKRLQD--LSWETLDFNGQLTAKEREIVLRDFNANNE 838
Score = 66 (28.3 bits), Expect = 4.7e-39, Sum P(5) = 4.7e-39
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 666 ILLMLLRLRQACDHP-LLV-------KEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETS 717
IL++LLRLRQ C HP L++ D +V + ++ +L D+L +L ET
Sbjct: 638 ILVLLLRLRQFCCHPGLMIGMLRGALTAEDVQNVKVDASDVEGQLKMDVLAELDKFDETD 697
Query: 718 SAICCVCSDPPEDS 731
S C C + EDS
Sbjct: 698 SEDDC-CDE--EDS 708
Score = 44 (20.5 bits), Expect = 6.0e-28, Sum P(5) = 6.0e-28
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 442 IVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKI 481
+ E+ K D+EE K E Y + + + K KKI
Sbjct: 278 VYCKEIRKISMFDDEEESGKEEEQYEPPEKRTCHVKTKKI 317
>DICTYBASE|DDB_G0282115 [details] [associations]
symbol:DDB_G0282115 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
dictyBase:DDB_G0282115 Pfam:PF00097 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AAFI02000045 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:XP_640361.1
ProteinModelPortal:Q54SZ4 EnsemblProtists:DDB0233436 GeneID:8623416
KEGG:ddi:DDB_G0282115 InParanoid:Q54SZ4 OMA:DIVITTH
ProtClustDB:CLSZ2430494 Uniprot:Q54SZ4
Length = 1640
Score = 255 (94.8 bits), Expect = 6.2e-38, Sum P(6) = 6.2e-38
Identities = 65/182 (35%), Positives = 97/182 (53%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W+RV++DE+Q K +T + + +L A +WCLSGTPI N +DD+Y FL
Sbjct: 1137 LLTIHWWRVIIDESQVCKI-KTLIFKGLQNLDAIHKWCLSGTPISNYLDDIYPSLHFLNC 1195
Query: 567 DPYAV-YKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
P A K++ I P +L KK V+ I+LRR K +D LP K
Sbjct: 1196 YPIAQDLKTWRKLIDRP---KNLELLKK---VINPILLRREKSEILD----FKLPKKNKE 1245
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKE 685
+ +DF++ E Y L S + + + + G + +NYA +L +LLRLRQ CDH L++
Sbjct: 1246 IVYLDFNENEADDYDTLFSVAQETLQKISCRGGILKNYATVLALLLRLRQCCDHFHLIRH 1305
Query: 686 YD 687
D
Sbjct: 1306 ID 1307
Score = 114 (45.2 bits), Expect = 6.2e-38, Sum P(6) = 6.2e-38
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 854 KSIVFSQWTRMLDLVENSLNQ-HCIQ---YRRLDGTMSLPARDRAVKDFNTDREV 904
K ++ SQWT MLDL+E SL Q H ++ Y R DG S +D+A+K N D +V
Sbjct: 1477 KCLIVSQWTSMLDLIEESLKQNHWVKNTHYVRYDGRCSHQQKDKAIKQLNEDDDV 1531
Score = 105 (42.0 bits), Expect = 6.2e-38, Sum P(6) = 6.2e-38
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 383 PAAGTLVVCPASVLRQWARELEDKV-PDKA-ALSVLIYHGGSRTK--DPVELAKYDVVLT 438
P A TL++CP S++ QW E++ + PD L + YHG +R K V+L D+V+T
Sbjct: 1043 PKA-TLIICPPSLVSQWKSEIKKHLKPDYFNKLEIFEYHGANRKKKLSGVDLNLMDIVIT 1101
Query: 439 TYSIVTNEVPK-QPSVDEEEADEKNG 463
T++ E K + + + NG
Sbjct: 1102 THNTFGIEFKKYEEDMQSAYTNNANG 1127
Score = 85 (35.0 bits), Expect = 6.2e-38, Sum P(6) = 6.2e-38
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 710 LLSRLETSS-AICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDN----MCPAPRCKEQ 764
L+ ++TS+ IC C D + V CGH FC C + + DN + P C +
Sbjct: 1302 LIRHIDTSTDVICNSCKDIAVNPVKNHCGHDFCLDCFEDLVRNPDNNNNRVSLCPECDSE 1361
Query: 765 L 765
L
Sbjct: 1362 L 1362
Score = 71 (30.1 bits), Expect = 6.2e-38, Sum P(6) = 6.2e-38
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 292 RSLHCL-GGILADDQGLGKTISIIALIQMQRSLQSKSKTE 330
+S H + GG+L D+ GLGKT+ IALI + S + +
Sbjct: 976 KSKHKIAGGLLCDEMGLGKTVMSIALIMSNHPVFSTHRQQ 1015
Score = 56 (24.8 bits), Expect = 6.2e-38, Sum P(6) = 6.2e-38
Identities = 21/68 (30%), Positives = 30/68 (44%)
Query: 226 GPSDLA-YRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALA 284
GPS +G + GG++ I L + + + PD L S L HQK L
Sbjct: 866 GPSQFPNILNGDGNSGNGGGNKNEINPRDLF-VKKALLTTEAPDSLKS-QLKHHQKEGLW 923
Query: 285 WMLQKETR 292
WML +E +
Sbjct: 924 WMLGREQK 931
Score = 46 (21.3 bits), Expect = 1.4e-27, Sum P(4) = 1.4e-27
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 442 IVTNEVPKQPSVDEEEADEKNGET-YGLSSEFS 473
I+ NE K+ ++D+EE D+ E Y +++ S
Sbjct: 174 IIINE-KKEINIDQEEEDQPTQEVDYSITNSSS 205
>ASPGD|ASPL0000008250 [details] [associations]
symbol:AN10794 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014905 Pfam:PF00176 Pfam:PF00271 Pfam:PF08797
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:BN001301 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EnsemblFungi:CADANIAT00006774
OMA:LADMMGL Uniprot:C8V1S3
Length = 1170
Score = 326 (119.8 bits), Expect = 8.1e-38, Sum P(3) = 8.1e-38
Identities = 128/434 (29%), Positives = 201/434 (46%)
Query: 503 GCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFR 562
G PL K+ FR+VLDEA TI+ +A L A+RRW ++GTPIQN +DDL S +
Sbjct: 654 GSSPLTKMNMFRIVLDEAHTIREQSAAQTQAIFRLNAQRRWSVTGTPIQNRLDDLLSVTK 713
Query: 563 FLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPK 622
FL PY F I L+ ++ + LRR K I+LP +
Sbjct: 714 FLGIYPYDDRSRFNMHILSRFKTGDATVLASLRVLVDSFTLRRVKDK-------IDLPAR 766
Query: 623 TISLTKVDFSKEE---WAFYKKLESDSLKKFKAFADAGTVN-QNYANILLMLLRLRQACD 678
+ ++FS+ E F++K ES+ + + A D + + Y +IL ++ LRQ
Sbjct: 767 HDKIVMLEFSESEAQLHEFFRK-ESNVMMRVIAGEDKSKMKGRMYHHILKAMMILRQISA 825
Query: 679 HPLLVKEYD----------FDSVGKISGEMAKRLPRDM-LIDLLSRLETSSA-ICCVCS- 725
H + + D D++ G A + D ++ + ++ SSA +C +CS
Sbjct: 826 HGKELLDSDERARIKGLSVHDAIDLEEGPSADAVATDKKAYEMFTLMQESSADMCAICSK 885
Query: 726 ---DP-PEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRC---KEQLGADVVFSKTTLK- 777
+P P+ + ++ G V + + D +CP C ++Q+ + V + +
Sbjct: 886 RLEEPNPDANGSSVPGKV---DIIAFILPCFDVLCP--ECFSGRKQVFNNRVGDQDSFDV 940
Query: 778 NCVSDDGGGSPTDSPFADKSGILDN--EYISSK-IRTVLDILHTQCELNTKCSIVEIHDL 834
C +G S + S +G+ D E K R +L +TK + H L
Sbjct: 941 KCDVCEGWISASYSAIT-AAGLQDYLMEQAREKQTRKQAKVLGEYEGPHTKTKALLSHLL 999
Query: 835 AGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSL-NQHCIQYRRLDGTMSLPARDR 893
A + S+ + E PIKS+VFS WT LDL+E +L +Q Y RLDGTMSLPAR++
Sbjct: 1000 ATAEESAKLPEG---EAPIKSVVFSAWTSHLDLIEIALRDQGLTGYTRLDGTMSLPARNK 1056
Query: 894 AVKDFNTDREVCSL 907
A+ +F D L
Sbjct: 1057 ALDNFRDDNNTTIL 1070
Score = 140 (54.3 bits), Expect = 8.1e-38, Sum P(3) = 8.1e-38
Identities = 27/61 (44%), Positives = 42/61 (68%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL+V P S + W ++++ + D AL+ ++HG SRT EL+KYD+V+TTYSIV +E
Sbjct: 586 TLLVAPLSTVNNWVSQVKEHLRD-GALTSYVFHGSSRTTSVDELSKYDLVITTYSIVLSE 644
Query: 447 V 447
+
Sbjct: 645 L 645
Score = 77 (32.2 bits), Expect = 8.1e-38, Sum P(3) = 8.1e-38
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 277 KHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
K++++ +L +E LGG+LAD GLGKT+SI++L+
Sbjct: 516 KYREVISGIVLDQEPPQ--SLGGLLADMMGLGKTLSILSLV 554
Score = 59 (25.8 bits), Expect = 6.0e-36, Sum P(3) = 6.0e-36
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 228 SDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWML 287
S + Y SA+E ++ Q D N P+++ P +++ LL+HQK AL +M
Sbjct: 432 SGVNYEVRSAEE-VTDAVMKMFDQLQSAD-NLPEMD---PPAVVTTPLLRHQKQALWFMT 486
Query: 288 QKE 290
+KE
Sbjct: 487 EKE 489
Score = 37 (18.1 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 446 EVPKQPSVDEEEADEKNGETYGLSSEFSVN 475
++ + PS D D+K E + L E S +
Sbjct: 849 DLEEGPSADAVATDKKAYEMFTLMQESSAD 878
>SGD|S000004022 [details] [associations]
symbol:RAD5 "DNA helicase" species:4932 "Saccharomyces
cerevisiae" [GO:0010994 "free ubiquitin chain polymerization"
evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042276
"error-prone translesion synthesis" evidence=IMP] [GO:0009378
"four-way junction helicase activity" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IGI;IMP] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0000403 "Y-form
DNA binding" evidence=IDA] [GO:0000400 "four-way junction DNA
binding" evidence=IDA] [GO:0006301 "postreplication repair"
evidence=IDA] [GO:0000209 "protein polyubiquitination"
evidence=IDA] InterPro:IPR001841 InterPro:IPR018957
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
SGD:S000004022 Pfam:PF00097 Prosite:PS00518 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0008270 EMBL:BK006945
GO:GO:0000790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0006302
GO:GO:0000209 InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000403 GO:GO:0009378
GO:GO:0008094 GO:GO:0042276 GeneTree:ENSGT00700000104586
GO:GO:0000400 GO:GO:0010994 KO:K15505 HOGENOM:HOG000040492
OMA:MDPWWSP OrthoDB:EOG4J40R2 EMBL:M96644 EMBL:Z73204 EMBL:S46103
PIR:S64859 RefSeq:NP_013132.1 ProteinModelPortal:P32849 SMR:P32849
DIP:DIP-5830N IntAct:P32849 MINT:MINT-2784640 STRING:P32849
PaxDb:P32849 PeptideAtlas:P32849 EnsemblFungi:YLR032W GeneID:850719
KEGG:sce:YLR032W CYGD:YLR032w NextBio:966793 Genevestigator:P32849
GermOnline:YLR032W Uniprot:P32849
Length = 1169
Score = 315 (115.9 bits), Expect = 1.0e-37, Sum P(5) = 1.0e-37
Identities = 65/183 (35%), Positives = 106/183 (57%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L V ++R+++DE I+N T ++A +L+ K +W L+GTPI N +DDLYS +FL+
Sbjct: 670 LFSVNFYRIIIDEGHNIRNRTTVTSKAVMALQGKCKWVLTGTPIINRLDDLYSLVKFLEL 729
Query: 567 DPYAVYKSFYSTIKIPI-SRNSLHGYKKLQAVLRAIMLRRTKGTFI-DGQPIINLPPKTI 624
DP+ + + + P S+N + + A+L ++LRRTK DG+P++ LPPK +
Sbjct: 730 DPWRQINYWKTFVSTPFESKNYKQAFDVVNAILEPVLLRRTKQMKDKDGKPLVELPPKEV 789
Query: 625 SLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK 684
+ ++ FSK + YK L + K+ G + + Y+ IL+ +LRLRQ C HP L+
Sbjct: 790 VIKRLPFSKSQDLLYKFLLDKAEVSVKSGIARGDLLKKYSTILVHILRLRQVCCHPGLIG 849
Query: 685 EYD 687
D
Sbjct: 850 SQD 852
Score = 94 (38.1 bits), Expect = 1.0e-37, Sum P(5) = 1.0e-37
Identities = 34/93 (36%), Positives = 44/93 (47%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYD----VVLTTYSI 442
TL+V P S+L QW+ E K + + +Y+GG+ + L K VVLTTY I
Sbjct: 588 TLIVVPMSLLTQWSNEFT-KANNSPDMYHEVYYGGNVSSLKTLLTKTKTPPTVVLTTYGI 646
Query: 443 VTNEVPKQPSVDEEEADEKNGETYGLSSEFSVN 475
V NE K DE + GL FSVN
Sbjct: 647 VQNEWTKHSK--GRMTDEDVNISSGL---FSVN 674
Score = 90 (36.7 bits), Expect = 1.0e-37, Sum P(5) = 1.0e-37
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 721 CCVCSDPPED---SVVTMCGHVFCYQCASEYIT--GDDNM-CPAPRCKEQLGA 767
C +C+ P D ++ T CGH FC +C EYI N+ P C+ Q+ A
Sbjct: 914 CSICTTEPMDLDKALFTECGHSFCEKCLFEYIEFQNSKNLGLKCPNCRNQIDA 966
Score = 67 (28.6 bits), Expect = 1.0e-37, Sum P(5) = 1.0e-37
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 253 ALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTIS 312
A ++L Q V + DG+ L + +LA + K GGIL+D+ GLGKT++
Sbjct: 488 AAQNLQQDHVN--VEDGIFFYANLHSGEFSLAKPILKTMIK----GGILSDEMGLGKTVA 541
Query: 313 IIALI 317
+L+
Sbjct: 542 AYSLV 546
Score = 61 (26.5 bits), Expect = 1.0e-37, Sum P(5) = 1.0e-37
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 856 IVFSQWTRMLDLVENSL----NQHCIQYRRLDGTMSLPARDRAVKDF 898
++FSQ++ LD++E L ++ + + DG +SL R + DF
Sbjct: 1016 VIFSQFSTYLDILEKELTHTFSKDVAKIYKFDGRLSLKERTSVLADF 1062
Score = 53 (23.7 bits), Expect = 2.8e-36, Sum P(5) = 2.8e-36
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 247 RLIYQAALEDLNQPKVEATLPD-GLLSVNLLKHQKIALAWMLQKE 290
+ Y+AA + + T P + + L +QK L WML++E
Sbjct: 408 KTFYKAAQSSESLKSLPETEPSRDVFKLELRNYQKQGLTWMLRRE 452
Score = 44 (20.5 bits), Expect = 2.3e-35, Sum P(5) = 2.3e-35
Identities = 12/54 (22%), Positives = 28/54 (51%)
Query: 223 QFGGPSDLAYRSGSADERAVGGDERLIYQAALED----LNQPKVEATLPDGLLS 272
QF P+D+++ + + + V ++ + + A L L +P ++ + G+LS
Sbjct: 478 QFKWPNDMSWAAQNLQQDHVNVEDGIFFYANLHSGEFSLAKPILKTMIKGGILS 531
>UNIPROTKB|G4MPA7 [details] [associations]
symbol:MGG_07014 "DNA repair protein RAD16" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 Pfam:PF00097
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
EMBL:CM001231 InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K15083 RefSeq:XP_003709772.1
ProteinModelPortal:G4MPA7 EnsemblFungi:MGG_07014T0 GeneID:2685187
KEGG:mgr:MGG_07014 Uniprot:G4MPA7
Length = 986
Score = 175 (66.7 bits), Expect = 1.4e-37, Sum P(6) = 1.4e-37
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + + RV+LDEA IK+ T ++AC +L+ RWCL+GTP+QN I + +S RFLK
Sbjct: 514 LHSIDFHRVILDEAHYIKSRTTMTSKACLALKTTYRWCLTGTPLQNRIGEFFSLVRFLKI 573
Query: 567 DPYAVY 572
+P+A Y
Sbjct: 574 EPFANY 579
Score = 126 (49.4 bits), Expect = 1.4e-37, Sum P(6) = 1.4e-37
Identities = 32/96 (33%), Positives = 52/96 (54%)
Query: 591 YKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKF 650
++KL+ + IMLRR K +D + LP K I + + F + E + ++ +KF
Sbjct: 634 FRKLRLLTSKIMLRRQKKDHMDS---MELPLKEIIIDRQFFGEVEKDLAGSIMHNNQRKF 690
Query: 651 KAFADAGTVNQNYANILLMLLRLRQACDHP-LLVKE 685
+ G V NYANI +L ++RQ DHP L++K+
Sbjct: 691 DTYVAQGVVLNNYANIFGLLSQMRQVADHPDLILKK 726
Score = 114 (45.2 bits), Expect = 1.4e-37, Sum P(6) = 1.4e-37
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 720 ICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADV 769
+CC+C D ED++ + C H FC CAS Y+ PRC L D+
Sbjct: 736 VCCICDDTAEDAIKSQCKHEFCRACASSYVNSTPQPT-CPRCHIVLSIDL 784
Score = 92 (37.4 bits), Expect = 1.4e-37, Sum P(6) = 1.4e-37
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS-RTKD--PVELAKYDVVLTTYSIV 443
+LV+ P L QW E++ + L ++YHG + +TK EL YDV++ +Y+ +
Sbjct: 433 SLVLAPPVALMQWMSEIQSYT--EGTLKTIVYHGSNAKTKKMTKAELKGYDVIIMSYNSL 490
Query: 444 TNEVPKQPSVDEEEADEKNG 463
+ KQ E+ +K+G
Sbjct: 491 QSMYAKQ----EKGVSKKDG 506
Score = 86 (35.3 bits), Expect = 1.4e-37, Sum P(6) = 1.4e-37
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+S NL Q LAWM K GG+L D+ GLGKTI ++L+
Sbjct: 379 ISRNLKPFQLQGLAWM--KAMEQTEWKGGLLGDEMGLGKTIQAVSLV 423
Score = 81 (33.6 bits), Expect = 1.4e-37, Sum P(6) = 1.4e-37
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF--NTDREVCSL 907
KSI+FSQ+T ML L+E L + I LDG+M+ R ++ F N D E C L
Sbjct: 834 KSIIFSQFTGMLQLIEWRLRRAGITTVMLDGSMTPAQRAASIDHFMNNVDVE-CFL 888
>CGD|CAL0004569 [details] [associations]
symbol:orf19.2097 species:5476 "Candida albicans" [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0009378 "four-way junction
helicase activity" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0010994 "free
ubiquitin chain polymerization" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0000209 "protein
polyubiquitination" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
CGD:CAL0004569 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000031 EMBL:AACQ01000030
RefSeq:XP_719543.1 RefSeq:XP_719667.1 ProteinModelPortal:Q5ACX1
STRING:Q5ACX1 GeneID:3638757 GeneID:3638827 KEGG:cal:CaO19.2097
KEGG:cal:CaO19.9644 KO:K15505 Uniprot:Q5ACX1
Length = 1084
Score = 297 (109.6 bits), Expect = 1.4e-34, Sum P(6) = 1.4e-34
Identities = 61/185 (32%), Positives = 105/185 (56%)
Query: 505 GPLAKVG-----WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYS 559
G L KVG +FR++LDE I+N T+ A++ L++ R+W L+GTPI N +DDLYS
Sbjct: 576 GELPKVGLYSVKFFRIILDEGHNIRNRNTKTAKSVYELQSSRKWILTGTPIVNRLDDLYS 635
Query: 560 YFRFLKYDPYAVYKSFYSTIKIPISRNSL-HGYKKLQAVLRAIMLRRTKGTFIDGQPIIN 618
+FL+ DP+ + + + + +P + + ++++L I LRRTK +G+P++
Sbjct: 636 LTKFLELDPWNNFSYWKTFVTLPFEQKKISQTLDVVKSILEPIFLRRTKSQKKNGKPLVE 695
Query: 619 LPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACD 678
LP K + + ++ F+ +E Y+ + + F +G + + Y IL +LRLRQ C
Sbjct: 696 LPAKEVVIEQIKFNDDEEKLYQWFKDRAYASFAEGIKSGQLLRRYTQILTHILRLRQVCC 755
Query: 679 HPLLV 683
H L+
Sbjct: 756 HVDLI 760
Score = 83 (34.3 bits), Expect = 1.4e-34, Sum P(6) = 1.4e-34
Identities = 30/134 (22%), Positives = 60/134 (44%)
Query: 704 RDMLIDLLSRLETSSAICCVCSDPP---EDSVVTMCGHVFCYQCASEYITGD-----DNM 755
++ + +L +++ + C +C+ P + VVT C H FC C E++ + +
Sbjct: 800 KEKMYNLYGKIKEENE-CSICTQVPIPYSEMVVTPCAHTFCLSCILEHLDFQKELKKEKL 858
Query: 756 CPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSP-FADKSGILDNEYISSKIRTV-- 812
CP C+ + +F ++ + D+P ++ + + D SSKI+ +
Sbjct: 859 CP--NCRSPISKYQLFRIRNQPTKGNEIRFHTQKDAPDYSFQLYLYDPNRSSSKIQALVR 916
Query: 813 -LDILHTQCELNTK 825
L LH+Q N+K
Sbjct: 917 HLKALHSQSP-NSK 929
Score = 79 (32.9 bits), Expect = 1.4e-34, Sum P(6) = 1.4e-34
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 842 AVHSKSPIEGPIKSIVFSQWTRMLDLVENSL---NQHCIQYRRLDGTMSLPARDRAVKDF 898
A+HS+SP K IVFSQ++ LD++++ L ++ I ++ DG +++ R + ++ F
Sbjct: 920 ALHSQSPNS---KVIVFSQFSSYLDIIQSELKLASEEFIVFK-FDGRLNMNDRTKLLESF 975
Query: 899 NTDRE 903
N E
Sbjct: 976 NQPLE 980
Score = 76 (31.8 bits), Expect = 1.4e-34, Sum P(6) = 1.4e-34
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 287 LQKETRSLHCLGGILADDQGLGKTISIIALI 317
L+K GGILAD+ GLGKTI+ +AL+
Sbjct: 447 LEKPVIKSSLRGGILADEMGLGKTIATLALV 477
Score = 62 (26.9 bits), Expect = 1.4e-34, Sum P(6) = 1.4e-34
Identities = 22/66 (33%), Positives = 28/66 (42%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYD------VVLTTY 440
TL+V P S+L QW E E + + L Y T L D V++TTY
Sbjct: 499 TLIVVPMSLLFQWKSEFEKCNNNSRHVCRLHYGEDQETNLAWSLCNPDNSKIPIVMITTY 558
Query: 441 SIVTNE 446
V NE
Sbjct: 559 GTVLNE 564
Score = 49 (22.3 bits), Expect = 7.4e-32, Sum P(6) = 7.4e-32
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 265 TLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQ 305
T P +++L +QK L+WML +E + L L + +D+
Sbjct: 354 TPPKENFALDLRSYQKHGLSWMLARE-KELDVLEMLSNEDK 393
Score = 37 (18.1 bits), Expect = 1.4e-34, Sum P(6) = 1.4e-34
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 103 YLSGNKNVGQLQ-TVNPRIANVASADYEKISSQQALKR 139
YL+ + L T NP ++ DY K S +A R
Sbjct: 244 YLTNSSFAKNLDATENPIDLKKSNFDYSKESESEAALR 281
>UNIPROTKB|G4NIT2 [details] [associations]
symbol:MGG_12155 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 Prosite:PS00518 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 EMBL:CM001236 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_003719705.1 ProteinModelPortal:G4NIT2
EnsemblFungi:MGG_12155T0 GeneID:2677543 KEGG:mgr:MGG_12155
Uniprot:G4NIT2
Length = 1430
Score = 297 (109.6 bits), Expect = 1.9e-34, Sum P(5) = 1.9e-34
Identities = 68/177 (38%), Positives = 94/177 (53%)
Query: 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPY 569
V W RVVLDEA IKNH ++ ++AC LR+K RW LSGTPI N+I++LY Y RFL+ +
Sbjct: 665 VDWHRVVLDEAHAIKNHLSRTSKACVHLRSKHRWALSGTPIHNTIEELYPYMRFLRVEWA 724
Query: 570 AVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRR-TKGTFIDGQPIINLPPK-TISLT 627
A K F N +L AV+ ++M+RR TF+ GQPI+ +PP +
Sbjct: 725 ADMKDFKKKFGGTPGDNDSEN-SRLAAVVPSLMIRRRVHDTFM-GQPILRIPPTHPVKTI 782
Query: 628 KVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK 684
V+ S EE Y +LE + G ++ L RLRQ HP L++
Sbjct: 783 SVELSTEEKLIYHRLEDRFRDNLNSHIKEGVSSKKLRTYFTYLTRLRQCTSHPFLLE 839
Score = 95 (38.5 bits), Expect = 1.9e-34, Sum P(5) = 1.9e-34
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIA 315
L HQ + + +ML KE L GGILAD GLGKT+ ++A
Sbjct: 523 LFNHQLVGVHFMLGKEFSPLGPYGGILADQMGLGKTVQMLA 563
Score = 84 (34.6 bits), Expect = 1.9e-34, Sum P(5) = 1.9e-34
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 720 ICCVCSDPPEDSVVTM-CGHVFCYQCASEYITGDDNMCPAPRC 761
IC C++ P+DS +T CGH FC C + + P+C
Sbjct: 928 ICRSCTELPQDSQITEPCGHTFCRDCIEPIVHNAEASNQEPKC 970
Score = 74 (31.1 bits), Expect = 1.9e-34, Sum P(5) = 1.9e-34
Identities = 23/84 (27%), Positives = 35/84 (41%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL+V PA+ + QW EL+ A + Y + + P L K VV+ +Y +
Sbjct: 574 TLIVAPAAAIEQWKSELKKHCT--FAKRIWHYSDKNENQIPEVLKKEKVVIASYQAIAKA 631
Query: 447 VPKQPSVDEEEADEKNGETYGLSS 470
P +E NG GL +
Sbjct: 632 FPS-----DEALRRINGTKLGLEA 650
Score = 53 (23.7 bits), Expect = 1.9e-34, Sum P(5) = 1.9e-34
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT 900
K I+F+ W + ++ I++ G+M + R AV+ F T
Sbjct: 1080 KIIIFTHWVPLARILGRVFEAEKIRFLYYFGSMGMGQRKTAVEKFTT 1126
Score = 49 (22.3 bits), Expect = 2.0e-26, Sum P(5) = 2.0e-26
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 392 PASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKY 433
P S W RE E + D+ A+ L+ GSR DP + A +
Sbjct: 387 PMSAQEWWEREYE-RNSDEDAIPNLLVPNGSR--DPNQTATW 425
Score = 41 (19.5 bits), Expect = 5.8e-29, Sum P(5) = 5.8e-29
Identities = 22/114 (19%), Positives = 47/114 (41%)
Query: 204 EGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGS----ADERAVGGDERLIYQAALEDLN- 258
+G+ L + H +S+ + P AY+ +D+ D + + + D +
Sbjct: 134 KGSGRLKHTRGHDQSMPIDLTQNPETTAYQRADVVFLSDDEEESDDRKSVISVSDGDEDV 193
Query: 259 QPKVEATLPDG-------LLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQ 305
+P +E+ PD ++ NL+K + L +K+ GG L+ ++
Sbjct: 194 KPPIESIYPDAERASPAAVVRHNLVKMRNKYLRLTAKKDNLKAKEAGGPLSQEE 247
>DICTYBASE|DDB_G0287171 [details] [associations]
symbol:DDB_G0287171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 dictyBase:DDB_G0287171
Prosite:PS00518 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AAFI02000098 KO:K15710 RefSeq:XP_637376.1
ProteinModelPortal:Q54KQ4 EnsemblProtists:DDB0233435 GeneID:8625998
KEGG:ddi:DDB_G0287171 InParanoid:Q54KQ4 OMA:QKKANEC Uniprot:Q54KQ4
Length = 1872
Score = 184 (69.8 bits), Expect = 1.2e-27, Sum P(6) = 1.2e-27
Identities = 52/185 (28%), Positives = 99/185 (53%)
Query: 510 VGWFRVVLDEAQTIKNH-RTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
+ W+R+ LDEAQ +++ +T+ + L + RWCL+GTPIQ S+DD++ F FL+ +P
Sbjct: 847 IKWWRICLDEAQMVESSSQTKYKKLALGLESHYRWCLTGTPIQRSLDDMFGLFEFLRLEP 906
Query: 569 YAVYKSFYSTI----KIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTI 624
++ + +++ I + + S + ++ ++M+R +K I + + LP +
Sbjct: 907 FSS-RYWWNCIILHKYLALGEQSFLDW--FHCIVHSVMIRNSKA-MIRNE--LQLPNQYD 960
Query: 625 SLTKV-DFSKEEWAFYKKLESDSLKK----FKAFADAGTVNQNYA-----NILLMLLRLR 674
+ TK+ FS E +Y+K ++ ++ F+ + G Q+ + +IL LL LR
Sbjct: 961 NDTKLLRFSMVEAHYYQKKANECSQEARLLFQKYFRGGRSIQDISISHLNSILAPLLVLR 1020
Query: 675 QACDH 679
Q C H
Sbjct: 1021 QTCQH 1025
Score = 126 (49.4 bits), Expect = 1.2e-27, Sum P(6) = 1.2e-27
Identities = 47/202 (23%), Positives = 86/202 (42%)
Query: 712 SRLETSSAICCVCSDP-PEDSVVTMCGHVFCYQCASEYITGDDN----MCPAPRCKEQLG 766
S + +IC +C + ++ V+ +CGH FCY C I N CP R + +
Sbjct: 1556 STVTDEKSICAICQEVFGKNVVMLLCGHSFCYDCVMFMIEKVPNCRTIQCPICRARSNI- 1614
Query: 767 ADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYIS---SKIRTVL-DILHTQCEL 822
++ + T +N D S + K L I+ I+T+ +I+ T
Sbjct: 1615 EEISYLSTDKENGELVDN--SNVKGSYGTKIESLVQSVINIQKKSIKTIQPNIIPTTTST 1672
Query: 823 NTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRL 882
T + + + S+ ++ K E K I+FSQW +L+++ +L ++ IQ+ +
Sbjct: 1673 TTTTTTTTTNTNTNTTNSN-INIKKD-ESIQKIIIFSQWADVLEIISRALKENEIQFAKA 1730
Query: 883 DGTMSLPARDRAVKDFNTDREV 904
S + + A+ F D V
Sbjct: 1731 VHRGS--SFEMAINQFRKDPNV 1750
Score = 111 (44.1 bits), Expect = 1.2e-27, Sum P(6) = 1.2e-27
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVELAKYDVVLTTYSIVTN 445
TL+V P ++ QW E+ V L V IY+G + K +P +LA YD+VLTTY ++++
Sbjct: 762 TLIVAPNTIFTQWQEEI---VKHTNGLKVYIYNGIYKDKINPFQLADYDLVLTTYDVLSD 818
Query: 446 E 446
+
Sbjct: 819 D 819
Score = 77 (32.2 bits), Expect = 1.2e-27, Sum P(6) = 1.2e-27
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 286 MLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+L + L +GGILAD+ GLGKT+ + L+
Sbjct: 539 LLSDKKDDLSLMGGILADEMGLGKTVEFLGLV 570
Score = 57 (25.1 bits), Expect = 1.2e-27, Sum P(6) = 1.2e-27
Identities = 23/111 (20%), Positives = 46/111 (41%)
Query: 91 HQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSL 150
HQ + Q D++ S ++N + + + P+ + + + S+QQ QPH
Sbjct: 15 HQQNGSQGDETRNSSESQN--KRKKIQPKRLSQGQLNEKSWSNQQQ---------QPHQQ 63
Query: 151 NTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIM 201
N + ++ N N++ + N + N+ +Y + NDD M
Sbjct: 64 NNNNNNNNNNNNNNNNNNNNNN-----NNNNNNNNNNNNNYIIIDNDDTPM 109
Score = 39 (18.8 bits), Expect = 1.2e-27, Sum P(6) = 1.2e-27
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 249 IYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
+Y D + ++ + +G + L +Q A+ WML +E
Sbjct: 434 LYDNVKMDSDAVEISKSKFNGQMISTLKPYQLKAVNWMLNRE 475
>UNIPROTKB|E1C5L6 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF00628 Pfam:PF13639
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:AADN02025316 IPI:IPI00575038 Ensembl:ENSGALT00000020082
Uniprot:E1C5L6
Length = 1682
Score = 240 (89.5 bits), Expect = 3.9e-26, Sum P(6) = 3.9e-26
Identities = 64/188 (34%), Positives = 93/188 (49%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DLY FL
Sbjct: 807 PLVAVEWWRICLDEAQMVECTTAKAAEMALRLSGINRWCVSGTPVQRGLEDLYGLVLFLG 866
Query: 566 YDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
DPY V + + P R + + L +++ IM R K ID I +PP+T +
Sbjct: 867 IDPYWVKHWWDQLLYRPYCRKNS---QPLYSLIAKIMWRSAKKDVIDQ---IQIPPQTEN 920
Query: 626 LTKVDFSKEEWAFYKKLES----DSLKKFKAFAD-----AGTVNQNYANILLMLLRLRQA 676
+ + FS E FY + D+L K + +D + + +IL LLRLRQA
Sbjct: 921 IHWLHFSPVERHFYHRQHEVCCQDALAKLRKISDWTLKLSSLDRRTVTSILYPLLRLRQA 980
Query: 677 CDHPLLVK 684
C HP V+
Sbjct: 981 CCHPQAVR 988
Score = 105 (42.0 bits), Expect = 3.9e-26, Sum P(6) = 3.9e-26
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIVT 444
TL++ P+S+ QW E+ V ++L VL+Y G + P LA+ DVV+TTY ++
Sbjct: 718 TLIISPSSICHQWVDEINRHVRS-SSLRVLVYQGVKKHGFLQPHMLAEQDVVITTYDVLR 776
Query: 445 NEVPKQPSVDEEEADEKNGETY 466
E+ VD ++ ++G +
Sbjct: 777 TELNY---VDIPHSNSEDGRRF 795
Score = 78 (32.5 bits), Expect = 3.9e-26, Sum P(6) = 3.9e-26
Identities = 14/20 (70%), Positives = 18/20 (90%)
Query: 298 GGILADDQGLGKTISIIALI 317
GGILAD+ GLGKT+ ++ALI
Sbjct: 371 GGILADEMGLGKTVEVLALI 390
Score = 60 (26.2 bits), Expect = 3.9e-26, Sum P(6) = 3.9e-26
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884
KS+VFS W +LD++ +L + + + +++G
Sbjct: 1529 KSLVFSTWQDVLDIIAKALYDNNMTFSQING 1559
Score = 51 (23.0 bits), Expect = 3.9e-26, Sum P(6) = 3.9e-26
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 721 CCVCSDP-PEDSVVTMCGHVFCYQC 744
C +C+ + V CGH FC +C
Sbjct: 1431 CPICARQLGKQWAVLTCGHCFCNEC 1455
Score = 37 (18.1 bits), Expect = 3.9e-26, Sum P(6) = 3.9e-26
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 173 AYHLAGPSTVNSKGYIRDYYVKKNDDD 199
A++L TV+ + + R + + + D D
Sbjct: 122 AFYLPSEQTVSEEFHERGFTLMRGDSD 148
>UNIPROTKB|E1C615 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF00628 Pfam:PF13639
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 Prosite:PS00518
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 EMBL:AADN02025316
IPI:IPI00821492 Ensembl:ENSGALT00000037603 Uniprot:E1C615
Length = 1682
Score = 240 (89.5 bits), Expect = 3.9e-26, Sum P(6) = 3.9e-26
Identities = 64/188 (34%), Positives = 93/188 (49%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DLY FL
Sbjct: 807 PLVAVEWWRICLDEAQMVECTTAKAAEMALRLSGINRWCVSGTPVQRGLEDLYGLVLFLG 866
Query: 566 YDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
DPY V + + P R + + L +++ IM R K ID I +PP+T +
Sbjct: 867 IDPYWVKHWWDQLLYRPYCRKNS---QPLYSLIAKIMWRSAKKDVIDQ---IQIPPQTEN 920
Query: 626 LTKVDFSKEEWAFYKKLES----DSLKKFKAFAD-----AGTVNQNYANILLMLLRLRQA 676
+ + FS E FY + D+L K + +D + + +IL LLRLRQA
Sbjct: 921 IHWLHFSPVERHFYHRQHEVCCQDALAKLRKISDWTLKLSSLDRRTVTSILYPLLRLRQA 980
Query: 677 CDHPLLVK 684
C HP V+
Sbjct: 981 CCHPQAVR 988
Score = 105 (42.0 bits), Expect = 3.9e-26, Sum P(6) = 3.9e-26
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIVT 444
TL++ P+S+ QW E+ V ++L VL+Y G + P LA+ DVV+TTY ++
Sbjct: 718 TLIISPSSICHQWVDEINRHVRS-SSLRVLVYQGVKKHGFLQPHMLAEQDVVITTYDVLR 776
Query: 445 NEVPKQPSVDEEEADEKNGETY 466
E+ VD ++ ++G +
Sbjct: 777 TELNY---VDIPHSNSEDGRRF 795
Score = 78 (32.5 bits), Expect = 3.9e-26, Sum P(6) = 3.9e-26
Identities = 14/20 (70%), Positives = 18/20 (90%)
Query: 298 GGILADDQGLGKTISIIALI 317
GGILAD+ GLGKT+ ++ALI
Sbjct: 366 GGILADEMGLGKTVEVLALI 385
Score = 60 (26.2 bits), Expect = 3.9e-26, Sum P(6) = 3.9e-26
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884
KS+VFS W +LD++ +L + + + +++G
Sbjct: 1529 KSLVFSTWQDVLDIIAKALYDNNMTFSQING 1559
Score = 51 (23.0 bits), Expect = 3.9e-26, Sum P(6) = 3.9e-26
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 721 CCVCSDP-PEDSVVTMCGHVFCYQC 744
C +C+ + V CGH FC +C
Sbjct: 1431 CPICARQLGKQWAVLTCGHCFCNEC 1455
Score = 37 (18.1 bits), Expect = 3.9e-26, Sum P(6) = 3.9e-26
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 173 AYHLAGPSTVNSKGYIRDYYVKKNDDD 199
A++L TV+ + + R + + + D D
Sbjct: 117 AFYLPSEQTVSEEFHERGFTLMRGDSD 143
>MGI|MGI:1917581 [details] [associations]
symbol:Shprh "SNF2 histone linker PHD RING helicase"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00526 UniPathway:UPA00143 MGI:MGI:1917581
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 GO:GO:0000786
GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218
HOVERGEN:HBG059171 OrthoDB:EOG4G4GPJ EMBL:AY162264 EMBL:AY162265
EMBL:AY162266 EMBL:AK053448 EMBL:AK082160 EMBL:BC006883
EMBL:BC055003 IPI:IPI00380430 IPI:IPI00469003 IPI:IPI00623316
IPI:IPI00845816 RefSeq:NP_001071175.1 RefSeq:NP_766525.3
UniGene:Mm.133101 ProteinModelPortal:Q7TPQ3 SMR:Q7TPQ3
STRING:Q7TPQ3 PhosphoSite:Q7TPQ3 PaxDb:Q7TPQ3 PRIDE:Q7TPQ3
Ensembl:ENSMUST00000044053 Ensembl:ENSMUST00000054814
Ensembl:ENSMUST00000159541 Ensembl:ENSMUST00000159810 GeneID:268281
KEGG:mmu:268281 UCSC:uc007ejp.1 UCSC:uc007ejq.1 InParanoid:Q7TPQ3
OMA:FEGLVKQ ChiTaRS:SHPRH NextBio:392208 Bgee:Q7TPQ3
CleanEx:MM_SHPRH Genevestigator:Q7TPQ3 Uniprot:Q7TPQ3
Length = 1674
Score = 228 (85.3 bits), Expect = 6.0e-26, Sum P(6) = 6.0e-26
Identities = 62/189 (32%), Positives = 92/189 (48%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+ FL
Sbjct: 798 PLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLG 857
Query: 566 YDPYAVYKSFYSTIKIPI-SRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTI 624
+PY V + + P +N H Y + + IM R K ID I +PP+T
Sbjct: 858 IEPYCVKHWWIRLLYHPYCKKNPQHLY----SFIAKIMWRSAKKDVIDQ---IQIPPQTE 910
Query: 625 SLTKVDFSKEEWAFYKKLES----DSLKKFKAFAD-----AGTVNQNYANILLMLLRLRQ 675
+ + FS E FY + D++ K + +D + + ++IL LLRLRQ
Sbjct: 911 EMHWLHFSPVERHFYHRQHEVCCQDAIVKLRKISDWALKLSSLDRRTVSSILYPLLRLRQ 970
Query: 676 ACDHPLLVK 684
AC HP V+
Sbjct: 971 ACCHPQAVR 979
Score = 97 (39.2 bits), Expect = 6.0e-26, Sum P(6) = 6.0e-26
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIVT 444
TL++ P+S+ QW E+ V ++L VL+Y G + P LA+ D+V+ TY ++
Sbjct: 709 TLIISPSSICHQWVDEINRHVRS-SSLRVLVYQGVKKHGFLQPHFLAEQDIVIITYDVLR 767
Query: 445 NEV 447
+E+
Sbjct: 768 SEL 770
Score = 82 (33.9 bits), Expect = 6.0e-26, Sum P(6) = 6.0e-26
Identities = 15/21 (71%), Positives = 19/21 (90%)
Query: 297 LGGILADDQGLGKTISIIALI 317
LGGILAD+ GLGKT+ ++ALI
Sbjct: 362 LGGILADEMGLGKTVEVLALI 382
Score = 57 (25.1 bits), Expect = 6.0e-26, Sum P(6) = 6.0e-26
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 695 SGEMAKRLPRDMLIDLLSRLE--TSSAI----CCVCSDP-PEDSVVTMCGHVFCYQCAS 746
+ ++ K+L + + + L + + TS I C +C+ + V CGH FC +C S
Sbjct: 1391 TSQLQKKLGQLLYLTNLEKSQDKTSGGINPEPCPICARQLGKQWAVLTCGHCFCNECTS 1449
Score = 56 (24.8 bits), Expect = 6.0e-26, Sum P(6) = 6.0e-26
Identities = 8/29 (27%), Positives = 20/29 (68%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRL 882
K++VFS W +LD++ +L + +++ ++
Sbjct: 1521 KALVFSTWQDVLDIISKALTDNNMEFTQI 1549
Score = 50 (22.7 bits), Expect = 6.0e-26, Sum P(6) = 6.0e-26
Identities = 25/97 (25%), Positives = 41/97 (42%)
Query: 199 DIMMYEGNRILP-SSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIY----QAA 253
D M G+R+ + LM + F P L ++ G D +Y Q
Sbjct: 220 DFMSDAGSRMKKFNQLMKRVMEKLHNFIIPDVLEEEEEGSESEPEGQDIDELYHFVKQTH 279
Query: 254 LEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
++ +V+ P L+ V L +Q+ A+ WMLQ+E
Sbjct: 280 QQETRSVQVDVQHP-ALIPV-LRPYQREAVNWMLQQE 314
>UNIPROTKB|E1BLB1 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:DAAA02026947 IPI:IPI00711948 Ensembl:ENSBTAT00000010673
Uniprot:E1BLB1
Length = 1688
Score = 225 (84.3 bits), Expect = 6.8e-25, Sum P(6) = 6.8e-25
Identities = 61/188 (32%), Positives = 90/188 (47%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+ FL
Sbjct: 812 PLVAVEWWRICLDEAQMVECPAVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLG 871
Query: 566 YDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+PY V + + P + + H L + + IM R K ID I +PP+T
Sbjct: 872 VEPYCVRHWWVRLLYRPYCKKNPHF---LYSFIAKIMWRSAKKDVIDQ---IQIPPQTEE 925
Query: 626 LTKVDFSKEEWAFYKKLES----DSLKKFKAFAD-----AGTVNQNYANILLMLLRLRQA 676
+ FS E FY + D++ K + +D + + +IL LLRLRQA
Sbjct: 926 THWLHFSPVERHFYHRQHEVCCQDAVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQA 985
Query: 677 CDHPLLVK 684
C HP V+
Sbjct: 986 CCHPQAVR 993
Score = 98 (39.6 bits), Expect = 6.8e-25, Sum P(6) = 6.8e-25
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIVT 444
TL++ P+S+ QW E+ V ++L VL+Y G + P LA+ D+V+ TY ++
Sbjct: 723 TLIISPSSICHQWVDEINRHVRS-SSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 781
Query: 445 NEV 447
+E+
Sbjct: 782 SEL 784
Score = 82 (33.9 bits), Expect = 6.8e-25, Sum P(6) = 6.8e-25
Identities = 15/21 (71%), Positives = 19/21 (90%)
Query: 297 LGGILADDQGLGKTISIIALI 317
LGGILAD+ GLGKT+ ++ALI
Sbjct: 372 LGGILADEMGLGKTVEVLALI 392
Score = 56 (24.8 bits), Expect = 6.8e-25, Sum P(6) = 6.8e-25
Identities = 8/29 (27%), Positives = 20/29 (68%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRL 882
K++VFS W +LD++ +L + +++ ++
Sbjct: 1535 KALVFSTWQDVLDIISKALTDNNMEFAQI 1563
Score = 56 (24.8 bits), Expect = 6.8e-25, Sum P(6) = 6.8e-25
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 695 SGEMAKRLPRDMLIDLLSRLE--TSSAI----CCVCSDP-PEDSVVTMCGHVFCYQCAS 746
+ ++ K+L + + + L + + TS I C +C+ + V CGH FC +C S
Sbjct: 1405 TSQLQKKLGQLLYLTNLEKSQDKTSGGINPEPCPICARQLGKQWAVLTCGHCFCNECIS 1463
Score = 43 (20.2 bits), Expect = 6.8e-25, Sum P(6) = 6.8e-25
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 237 ADERAVGGDERLIYQAALEDLNQP--KVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
+D G D +Y + Q ++ + L+ L +Q+ A+ WMLQ+E
Sbjct: 269 SDSEPEGQDIDELYHFVKQTHQQETRSIQVDVQHPALTPVLRPYQREAVNWMLQQE 324
>UNIPROTKB|E2R8G0 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006334 "nucleosome assembly" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218
OMA:FEGLVKQ EMBL:AAEX03000243 EMBL:AAEX03000244 RefSeq:XP_533438.2
Ensembl:ENSCAFT00000000517 GeneID:476233 KEGG:cfa:476233
Uniprot:E2R8G0
Length = 1685
Score = 223 (83.6 bits), Expect = 6.9e-25, Sum P(6) = 6.9e-25
Identities = 61/189 (32%), Positives = 91/189 (48%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+ FL
Sbjct: 809 PLVAVEWWRICLDEAQMVECPAVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLG 868
Query: 566 YDPYAVYKSFYSTIKIPI-SRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTI 624
+PY V + + P +N H Y + + I+ R K ID I +PP+T
Sbjct: 869 IEPYCVKHWWVRLLYRPYCKKNPQHLY----SFIAKILWRSAKKDVIDQ---IQIPPQTE 921
Query: 625 SLTKVDFSKEEWAFYKKLES----DSLKKFKAFAD-----AGTVNQNYANILLMLLRLRQ 675
+ + FS E FY + D++ K + +D + + +IL LLRLRQ
Sbjct: 922 EIHWLHFSPVERHFYHRQHEVCCQDAVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQ 981
Query: 676 ACDHPLLVK 684
AC HP V+
Sbjct: 982 ACCHPQAVR 990
Score = 98 (39.6 bits), Expect = 6.9e-25, Sum P(6) = 6.9e-25
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIVT 444
TL++ P+S+ QW E+ V ++L VL+Y G + P LA+ D+V+ TY ++
Sbjct: 720 TLIISPSSICHQWVDEINRHVRS-SSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 778
Query: 445 NEV 447
+E+
Sbjct: 779 SEL 781
Score = 82 (33.9 bits), Expect = 6.9e-25, Sum P(6) = 6.9e-25
Identities = 15/21 (71%), Positives = 19/21 (90%)
Query: 297 LGGILADDQGLGKTISIIALI 317
LGGILAD+ GLGKT+ ++ALI
Sbjct: 369 LGGILADEMGLGKTVEVLALI 389
Score = 56 (24.8 bits), Expect = 6.9e-25, Sum P(6) = 6.9e-25
Identities = 8/29 (27%), Positives = 20/29 (68%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRL 882
K++VFS W +LD++ +L + +++ ++
Sbjct: 1532 KALVFSTWQDVLDIISKALTDNNMEFAQI 1560
Score = 56 (24.8 bits), Expect = 6.9e-25, Sum P(6) = 6.9e-25
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 695 SGEMAKRLPRDMLIDLLSRLE--TSSAI----CCVCSDP-PEDSVVTMCGHVFCYQCAS 746
+ ++ K+L + + + L + + TS I C +C+ + V CGH FC +C S
Sbjct: 1402 TSQLQKKLGQLLYLTNLEKSQDKTSGGINPEPCPICARQLGKQWAVLTCGHCFCNECIS 1460
Score = 45 (20.9 bits), Expect = 6.9e-25, Sum P(6) = 6.9e-25
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 247 RLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
+ + Q ++ +V+ P L+ V L +Q+ A+ WMLQ+E
Sbjct: 280 QFVKQTHQQETQSIQVDVQHP-ALIPV-LRPYQREAVNWMLQQE 321
>DICTYBASE|DDB_G0281949 [details] [associations]
symbol:helE "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00490
dictyBase:DDB_G0281949 Prosite:PS00518 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0004386 EMBL:AAFI02000044 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
ProtClustDB:CLSZ2430494 RefSeq:XP_640427.1
ProteinModelPortal:Q54T24 EnsemblProtists:DDB0215339 GeneID:8623380
KEGG:ddi:DDB_G0281949 InParanoid:Q54T24 OMA:NSFCDKI Uniprot:Q54T24
Length = 1540
Score = 287 (106.1 bits), Expect = 8.0e-25, Sum P(5) = 8.0e-25
Identities = 109/406 (26%), Positives = 172/406 (42%)
Query: 298 GGILADDQGLGKTISIIALIQMQRSLQSKSKT--EVLGNQKTEXXXXXXXXXXXXXXXXK 355
GG+L D GLGKT+ I++L + S + E+L + K +
Sbjct: 638 GGMLCDKMGLGKTLMILSLSLKNHPIYSSHEIHKEILNDIKPQLIKRRKKYFIGTDSSSD 697
Query: 356 VKETGESDDIKPVPEVXXXXXXXXXXXPAAGTLVVCPASVLRQWARELEDKV-PD-KAAL 413
+ + S K P + TLV+ P SVL+QW +LE + PD L
Sbjct: 698 LSSSSSSSPTK-------------ITLPKS-TLVILPFSVLKQWRNQLELHLQPDFLKKL 743
Query: 414 SVLIYHGGSR---TKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLS- 469
+++IYHG +R T+D +L K D V TT+ + E S E+E K+ S
Sbjct: 744 NIIIYHGTNRKSITQD--QLIKADFVFTTHQTFSIEY----SFYEKERKNKSSSAISTSL 797
Query: 470 -------SEFSVNKKRKKIXXXXXXXXXXXXXXXXXXIDYGC--GPLAKVGWFRVVLDEA 520
+ + + PL + W+RV++DE+
Sbjct: 798 IPIPLINEDVIITTTTTTTTTTNNNNSNNNNNQKQISSKFTIIPPPLLCIHWWRVIIDES 857
Query: 521 QTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIK 580
K H++ R+ +L + RWCL+GTP QN+ DL+ FL P A K+ + K
Sbjct: 858 HKFK-HKSLFFRSLQNLDSVNRWCLTGTPYQNNCTDLFPMLYFLNVFPIA--KNIATWRK 914
Query: 581 IPISRNSLHGYKK-LQAVLRAIMLRRTKGTF-IDGQPIINLPPKTISLTKVDFSKEEWAF 638
+ S KK L+ L I+L R+K I + + +++F + E
Sbjct: 915 LVESIQDQSEKKKILKKYLNPIILSRSKKDVRIQQNQVYE------EIIELEFDQNESDA 968
Query: 639 YKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK 684
Y + DS + F+ D G +N +Y +L ++LRLR+ CDH L K
Sbjct: 969 YSLVFKDSNETFERIQDRGDLNHHYNLVLHLILRLRRCCDHSSLTK 1014
Score = 91 (37.1 bits), Expect = 8.0e-25, Sum P(5) = 8.0e-25
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 830 EIHDLAGSNGSSAVHSKSPI-EGPIKSIVFSQWTRMLDLVENSL--NQHC--IQYRRLDG 884
EI+ L S + + K+ + +K IVFS WT LDL+E SL N + + R+DG
Sbjct: 1310 EINSLKNSQKNIIANLKNAKGKNQLKGIVFSHWTMFLDLIEESLIANDWIKDVDFCRIDG 1369
Query: 885 TMSLPARDRAVKDF 898
+ + R+ + F
Sbjct: 1370 KLPISKREAIIDSF 1383
Score = 51 (23.0 bits), Expect = 8.0e-25, Sum P(5) = 8.0e-25
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 261 KVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILAD 303
K+E P+ L S LL+HQK + WM ++E G L++
Sbjct: 563 KIEQ--PEWLRS-KLLEHQKEGIWWMRKRELEPFITNGQTLSE 602
Score = 43 (20.2 bits), Expect = 8.0e-25, Sum P(5) = 8.0e-25
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 712 SRLETSSAICCVCSD--P-P--EDSVVTMCGHVFCYQC 744
S L C C + P P E+ +++ C H++C C
Sbjct: 1018 STLNLGQFFCSSCFEEIPSPHNENLLISDCDHLYCKAC 1055
Score = 39 (18.8 bits), Expect = 8.0e-25, Sum P(5) = 8.0e-25
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 88 SDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIAN 122
++++ +N +D++Y N N+ L +P N
Sbjct: 272 NNNNNNNNSNNNDNNYNKNNNNIDDLSE-DPNTDN 305
>RGD|1310342 [details] [associations]
symbol:Shprh "SNF2 histone linker PHD RING helicase, E3
ubiquitin protein ligase" species:10116 "Rattus norvegicus"
[GO:0000786 "nucleosome" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538 PROSITE:PS50089
PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184 SMART:SM00249
SMART:SM00526 RGD:1310342 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR014001 SMART:SM00487 GO:GO:0006334 GO:GO:0000786
GeneTree:ENSGT00700000104571 KO:K15710 CTD:257218 OrthoDB:EOG4G4GPJ
EMBL:CH473994 IPI:IPI00869721 RefSeq:NP_001100940.1 UniGene:Rn.2515
Ensembl:ENSRNOT00000019893 GeneID:308282 KEGG:rno:308282
UCSC:RGD:1310342 NextBio:658533 Uniprot:D4A9B2
Length = 1701
Score = 226 (84.6 bits), Expect = 8.8e-25, Sum P(6) = 8.8e-25
Identities = 62/189 (32%), Positives = 92/189 (48%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+ FL
Sbjct: 805 PLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCVSGTPVQRGLEDLFGLVVFLG 864
Query: 566 YDPYAVYKSFYSTIKIPI-SRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTI 624
+PY V + + P +N H Y + + IM R K ID I +PP+T
Sbjct: 865 IEPYCVKHWWIRLLYHPYCKKNPQHLY----SFIAKIMWRSAKKDVIDQ---IQIPPQTE 917
Query: 625 SLTKVDFSKEEWAFYKKLES----DSLKKFKAFAD-----AGTVNQNYANILLMLLRLRQ 675
+ + FS E FY + D++ K + +D + + ++IL LLRLRQ
Sbjct: 918 EMHWLHFSPVERHFYHRQHEVCCQDAVVKLRKISDWALKLSSLDRRTVSSILYPLLRLRQ 977
Query: 676 ACDHPLLVK 684
AC HP V+
Sbjct: 978 ACCHPQAVR 986
Score = 98 (39.6 bits), Expect = 8.8e-25, Sum P(6) = 8.8e-25
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIVT 444
TL++ P+S+ QW E+ V ++L VL+Y G + P LA+ D+V+ TY ++
Sbjct: 716 TLIISPSSICHQWVDEINRHVRS-SSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 774
Query: 445 NEV 447
+E+
Sbjct: 775 SEL 777
Score = 82 (33.9 bits), Expect = 8.8e-25, Sum P(6) = 8.8e-25
Identities = 15/21 (71%), Positives = 19/21 (90%)
Query: 297 LGGILADDQGLGKTISIIALI 317
LGGILAD+ GLGKT+ ++ALI
Sbjct: 360 LGGILADEMGLGKTVEVLALI 380
Score = 57 (25.1 bits), Expect = 8.8e-25, Sum P(6) = 8.8e-25
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 695 SGEMAKRLPRDMLIDLLSRLE--TSSAI----CCVCSDP-PEDSVVTMCGHVFCYQCAS 746
+ ++ K+L + + + L + + TS I C +C+ + V CGH FC +C S
Sbjct: 1418 TSQLQKKLGQLLYLTNLEKSQDKTSGGINPEPCPICARQLGKQWAVLTCGHCFCNECTS 1476
Score = 53 (23.7 bits), Expect = 8.8e-25, Sum P(6) = 8.8e-25
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 846 KSPIEGP-IKSIVFSQWTRMLDLVENSLNQHCIQYRRL 882
K ++ P K++VFS W +LD++ +L + + + ++
Sbjct: 1539 KIQLKDPGAKALVFSTWQDVLDIISKALTDNNMGFTQI 1576
Score = 43 (20.2 bits), Expect = 8.8e-25, Sum P(6) = 8.8e-25
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 255 EDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
++ +V+ P L+ V L +Q+ A+ WMLQ+E
Sbjct: 280 QEAKSVQVDVQHP-ALIPV-LRPYQREAVNWMLQQE 313
>UNIPROTKB|Q47YP1 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 208 (78.3 bits), Expect = 1.0e-24, Sum P(4) = 1.0e-24
Identities = 56/176 (31%), Positives = 94/176 (53%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAV 571
++ +VLDEA IKN +T++ +A +L+A+ + CL+GTP++N + + ++ F FL
Sbjct: 786 FYYLVLDEAHYIKNTKTKLYQAFLTLKAQHKLCLTGTPMENHLGEFWAQFNFLLPGFLGG 845
Query: 572 YKSFYSTIKIPISRNS-LHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT--ISLTK 628
+ F + PI ++ L + L ++ +LRRTK LPPKT I +
Sbjct: 846 QRQFTKLFRTPIEKHGELERKQLLNQRIKPFILRRTKDKIAT-----ELPPKTEIIQTLR 900
Query: 629 VDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK 684
++ + E +L DS K AD G + ++ +L LL+LRQ C+HP L+K
Sbjct: 901 IEGKQAELYESVRLAMDSRLK-DIIADKG-LKRSQIEVLDALLKLRQVCNHPKLLK 954
Score = 109 (43.4 bits), Expect = 1.0e-24, Sum P(4) = 1.0e-24
Identities = 39/122 (31%), Positives = 62/122 (50%)
Query: 209 LPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVG-GDERLIYQA-ALEDLNQPKVEATL 266
+P++L H ++ +++F G L+ D+ + G +L A L+D Q +
Sbjct: 599 MPNALSHDGTIELSRFQGHQTLSMLD---DQGMIAKGTSKLRALADKLKDFQQVTT-IPV 654
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIA--LIQMQRSLQ 324
P+GL + L +Q L W+ + R L GILADD GLGKTI +A LI+ Q+
Sbjct: 655 PEGL-NATLRTYQHQGLNWL--QFLREYQ-LNGILADDMGLGKTIQTLAHLLIEKQQGRL 710
Query: 325 SK 326
+K
Sbjct: 711 TK 712
Score = 83 (34.3 bits), Expect = 1.0e-24, Sum P(4) = 1.0e-24
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-----DPVELAK--YDVVLTTY 440
L+V P SV+ WA E++ P LS + HG R + + VE + D+++T+Y
Sbjct: 715 LIVAPTSVIFNWANEIDKFTPQ---LSYQVLHGNKRHEQFGCLEGVENGENQVDIIITSY 771
Query: 441 SIVTNEV 447
+++T ++
Sbjct: 772 ALITKDL 778
Score = 67 (28.6 bits), Expect = 1.0e-24, Sum P(4) = 1.0e-24
Identities = 28/97 (28%), Positives = 46/97 (47%)
Query: 810 RTVLDILHTQCELNTKCSIVEIHDLAGS---NGSSAVH---SKSP--IEGPIKSIVFSQW 861
R+ +++L +L C+ ++ L G+ N S+ + P I+ K ++FSQ+
Sbjct: 931 RSQIEVLDALLKLRQVCNHPKLLKLEGAKKVNQSAKLDYLMETLPEQIDEGRKILIFSQF 990
Query: 862 TRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF 898
T ML L+E+ L I Y +L G S R V F
Sbjct: 991 TSMLSLIEDELIDAGIGYVKLTG--STTKRQEVVDKF 1025
>TIGR_CMR|CPS_3404 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 208 (78.3 bits), Expect = 1.0e-24, Sum P(4) = 1.0e-24
Identities = 56/176 (31%), Positives = 94/176 (53%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAV 571
++ +VLDEA IKN +T++ +A +L+A+ + CL+GTP++N + + ++ F FL
Sbjct: 786 FYYLVLDEAHYIKNTKTKLYQAFLTLKAQHKLCLTGTPMENHLGEFWAQFNFLLPGFLGG 845
Query: 572 YKSFYSTIKIPISRNS-LHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT--ISLTK 628
+ F + PI ++ L + L ++ +LRRTK LPPKT I +
Sbjct: 846 QRQFTKLFRTPIEKHGELERKQLLNQRIKPFILRRTKDKIAT-----ELPPKTEIIQTLR 900
Query: 629 VDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK 684
++ + E +L DS K AD G + ++ +L LL+LRQ C+HP L+K
Sbjct: 901 IEGKQAELYESVRLAMDSRLK-DIIADKG-LKRSQIEVLDALLKLRQVCNHPKLLK 954
Score = 109 (43.4 bits), Expect = 1.0e-24, Sum P(4) = 1.0e-24
Identities = 39/122 (31%), Positives = 62/122 (50%)
Query: 209 LPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVG-GDERLIYQA-ALEDLNQPKVEATL 266
+P++L H ++ +++F G L+ D+ + G +L A L+D Q +
Sbjct: 599 MPNALSHDGTIELSRFQGHQTLSMLD---DQGMIAKGTSKLRALADKLKDFQQVTT-IPV 654
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIA--LIQMQRSLQ 324
P+GL + L +Q L W+ + R L GILADD GLGKTI +A LI+ Q+
Sbjct: 655 PEGL-NATLRTYQHQGLNWL--QFLREYQ-LNGILADDMGLGKTIQTLAHLLIEKQQGRL 710
Query: 325 SK 326
+K
Sbjct: 711 TK 712
Score = 83 (34.3 bits), Expect = 1.0e-24, Sum P(4) = 1.0e-24
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-----DPVELAK--YDVVLTTY 440
L+V P SV+ WA E++ P LS + HG R + + VE + D+++T+Y
Sbjct: 715 LIVAPTSVIFNWANEIDKFTPQ---LSYQVLHGNKRHEQFGCLEGVENGENQVDIIITSY 771
Query: 441 SIVTNEV 447
+++T ++
Sbjct: 772 ALITKDL 778
Score = 67 (28.6 bits), Expect = 1.0e-24, Sum P(4) = 1.0e-24
Identities = 28/97 (28%), Positives = 46/97 (47%)
Query: 810 RTVLDILHTQCELNTKCSIVEIHDLAGS---NGSSAVH---SKSP--IEGPIKSIVFSQW 861
R+ +++L +L C+ ++ L G+ N S+ + P I+ K ++FSQ+
Sbjct: 931 RSQIEVLDALLKLRQVCNHPKLLKLEGAKKVNQSAKLDYLMETLPEQIDEGRKILIFSQF 990
Query: 862 TRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF 898
T ML L+E+ L I Y +L G S R V F
Sbjct: 991 TSMLSLIEDELIDAGIGYVKLTG--STTKRQEVVDKF 1025
>UNIPROTKB|Q149N8 [details] [associations]
symbol:SHPRH "E3 ubiquitin-protein ligase SHPRH"
species:9606 "Homo sapiens" [GO:0000786 "nucleosome" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF13639 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184
SMART:SM00249 SMART:SM00490 SMART:SM00526 UniPathway:UPA00143
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0016874 GO:GO:0008270 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 GO:GO:0000786 EMBL:AL356599 KO:K15710
EMBL:AY161136 EMBL:AY163808 EMBL:CR749290 EMBL:AL451145
EMBL:BC113089 EMBL:BC117685 EMBL:BC117686 EMBL:AK075318
EMBL:AK094944 EMBL:AB095943 IPI:IPI00470931 IPI:IPI00746978
IPI:IPI00845433 IPI:IPI00845497 RefSeq:NP_001036148.2
RefSeq:NP_775105.1 UniGene:Hs.723297 ProteinModelPortal:Q149N8
SMR:Q149N8 DIP:DIP-46277N IntAct:Q149N8 MINT:MINT-1370426
STRING:Q149N8 PhosphoSite:Q149N8 DMDM:146325723 PaxDb:Q149N8
PRIDE:Q149N8 Ensembl:ENST00000275233 Ensembl:ENST00000367505
Ensembl:ENST00000438092 Ensembl:ENST00000519632 GeneID:257218
KEGG:hsa:257218 UCSC:uc003qle.3 UCSC:uc003qlf.3 UCSC:uc003qlj.1
CTD:257218 GeneCards:GC06M146185 HGNC:HGNC:19336 HPA:HPA034854
MIM:608048 neXtProt:NX_Q149N8 PharmGKB:PA134880315
HOVERGEN:HBG059171 OrthoDB:EOG4G4GPJ GenomeRNAi:257218
NextBio:92973 ArrayExpress:Q149N8 Bgee:Q149N8 Genevestigator:Q149N8
Uniprot:Q149N8
Length = 1683
Score = 220 (82.5 bits), Expect = 2.3e-24, Sum P(6) = 2.3e-24
Identities = 61/189 (32%), Positives = 90/189 (47%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+ FL
Sbjct: 807 PLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLG 866
Query: 566 YDPYAVYKSFYSTIKIPI-SRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTI 624
+PY V + + P +N H Y + + I+ R K ID I +PP+T
Sbjct: 867 IEPYCVKHWWVRLLYRPYCKKNPQHLY----SFIAKILWRSAKKDVIDQ---IQIPPQTE 919
Query: 625 SLTKVDFSKEEWAFYKKLES----DSLKKFKAFAD-----AGTVNQNYANILLMLLRLRQ 675
+ + FS E FY + D + K + +D + + +IL LLRLRQ
Sbjct: 920 EIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQ 979
Query: 676 ACDHPLLVK 684
AC HP V+
Sbjct: 980 ACCHPQAVR 988
Score = 98 (39.6 bits), Expect = 2.3e-24, Sum P(6) = 2.3e-24
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIVT 444
TL++ P+S+ QW E+ V ++L VL+Y G + P LA+ D+V+ TY ++
Sbjct: 718 TLIISPSSICHQWVDEINRHVRS-SSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 776
Query: 445 NEV 447
+E+
Sbjct: 777 SEL 779
Score = 82 (33.9 bits), Expect = 2.3e-24, Sum P(6) = 2.3e-24
Identities = 15/21 (71%), Positives = 19/21 (90%)
Query: 297 LGGILADDQGLGKTISIIALI 317
LGGILAD+ GLGKT+ ++ALI
Sbjct: 367 LGGILADEMGLGKTVEVLALI 387
Score = 56 (24.8 bits), Expect = 2.3e-24, Sum P(6) = 2.3e-24
Identities = 8/29 (27%), Positives = 20/29 (68%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRL 882
K++VFS W +LD++ +L + +++ ++
Sbjct: 1530 KALVFSTWQDVLDIISKALTDNNMEFAQI 1558
Score = 55 (24.4 bits), Expect = 2.3e-24, Sum P(6) = 2.3e-24
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 695 SGEMAKRLPRDMLIDLLSRLE--TSSAI----CCVCSDP-PEDSVVTMCGHVFCYQCAS 746
+ ++ K+L + + + L + + TS + C +C+ + V CGH FC +C S
Sbjct: 1400 TSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICARQLGKQWAVLTCGHCFCNECIS 1458
Score = 46 (21.3 bits), Expect = 1.9e-20, Sum P(5) = 1.9e-20
Identities = 18/84 (21%), Positives = 36/84 (42%)
Query: 251 QAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKT 310
Q+ +E+ ++ + + + H K +KE S+ C GIL + G+
Sbjct: 127 QSLIENFSERSITLMSSESSNQFLIYVHSKGEDVEKQKKEPMSI-CDKGILVESSFSGEM 185
Query: 311 ISIIALIQMQRSLQSKSKTEVLGN 334
+ + +Q +R ++ K E GN
Sbjct: 186 LEDLGWLQKKRRIKLYQKPE--GN 207
Score = 44 (20.5 bits), Expect = 2.3e-24, Sum P(6) = 2.3e-24
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 249 IYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
+ Q ++ +V+ P L+ V L +Q+ A+ WMLQ+E
Sbjct: 280 VKQTHQQETQSIQVDVQHP-ALIPV-LRPYQREAVNWMLQQE 319
>UNIPROTKB|K4DI94 [details] [associations]
symbol:SHPRH "SNF2 histone linker PHD RING helicase,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000786 "nucleosome"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006334 "nucleosome assembly" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR005818
Pfam:PF00176 Pfam:PF00271 Pfam:PF00538 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 PROSITE:PS51504 SMART:SM00184 SMART:SM00249
SMART:SM00490 SMART:SM00526 Prosite:PS00518 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 EMBL:CH471051
GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 EMBL:AL356599 EMBL:AL451145 HGNC:HGNC:19336
OMA:FEGLVKQ Ensembl:ENST00000367503 Uniprot:K4DI94
Length = 1687
Score = 220 (82.5 bits), Expect = 2.3e-24, Sum P(6) = 2.3e-24
Identities = 61/189 (32%), Positives = 90/189 (47%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+ FL
Sbjct: 807 PLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLG 866
Query: 566 YDPYAVYKSFYSTIKIPI-SRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTI 624
+PY V + + P +N H Y + + I+ R K ID I +PP+T
Sbjct: 867 IEPYCVKHWWVRLLYRPYCKKNPQHLY----SFIAKILWRSAKKDVIDQ---IQIPPQTE 919
Query: 625 SLTKVDFSKEEWAFYKKLES----DSLKKFKAFAD-----AGTVNQNYANILLMLLRLRQ 675
+ + FS E FY + D + K + +D + + +IL LLRLRQ
Sbjct: 920 EIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQ 979
Query: 676 ACDHPLLVK 684
AC HP V+
Sbjct: 980 ACCHPQAVR 988
Score = 98 (39.6 bits), Expect = 2.3e-24, Sum P(6) = 2.3e-24
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIVT 444
TL++ P+S+ QW E+ V ++L VL+Y G + P LA+ D+V+ TY ++
Sbjct: 718 TLIISPSSICHQWVDEINRHVRS-SSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 776
Query: 445 NEV 447
+E+
Sbjct: 777 SEL 779
Score = 82 (33.9 bits), Expect = 2.3e-24, Sum P(6) = 2.3e-24
Identities = 15/21 (71%), Positives = 19/21 (90%)
Query: 297 LGGILADDQGLGKTISIIALI 317
LGGILAD+ GLGKT+ ++ALI
Sbjct: 367 LGGILADEMGLGKTVEVLALI 387
Score = 56 (24.8 bits), Expect = 2.3e-24, Sum P(6) = 2.3e-24
Identities = 8/29 (27%), Positives = 20/29 (68%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRL 882
K++VFS W +LD++ +L + +++ ++
Sbjct: 1534 KALVFSTWQDVLDIISKALTDNNMEFAQI 1562
Score = 55 (24.4 bits), Expect = 2.3e-24, Sum P(6) = 2.3e-24
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 695 SGEMAKRLPRDMLIDLLSRLE--TSSAI----CCVCSDP-PEDSVVTMCGHVFCYQCAS 746
+ ++ K+L + + + L + + TS + C +C+ + V CGH FC +C S
Sbjct: 1404 TSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICARQLGKQWAVLTCGHCFCNECIS 1462
Score = 46 (21.3 bits), Expect = 1.9e-20, Sum P(5) = 1.9e-20
Identities = 18/84 (21%), Positives = 36/84 (42%)
Query: 251 QAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKT 310
Q+ +E+ ++ + + + H K +KE S+ C GIL + G+
Sbjct: 127 QSLIENFSERSITLMSSESSNQFLIYVHSKGEDVEKQKKEPMSI-CDKGILVESSFSGEM 185
Query: 311 ISIIALIQMQRSLQSKSKTEVLGN 334
+ + +Q +R ++ K E GN
Sbjct: 186 LEDLGWLQKKRRIKLYQKPE--GN 207
Score = 44 (20.5 bits), Expect = 2.3e-24, Sum P(6) = 2.3e-24
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 249 IYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
+ Q ++ +V+ P L+ V L +Q+ A+ WMLQ+E
Sbjct: 280 VKQTHQQETQSIQVDVQHP-ALIPV-LRPYQREAVNWMLQQE 319
>UNIPROTKB|F1S736 [details] [associations]
symbol:SHPRH "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006334
"nucleosome assembly" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000786 "nucleosome" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR005818 Pfam:PF00176 Pfam:PF00538
Pfam:PF13639 PROSITE:PS50089 PROSITE:PS51194 PROSITE:PS51504
SMART:SM00184 SMART:SM00249 SMART:SM00490 SMART:SM00526
Prosite:PS00518 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.10 InterPro:IPR011991
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR017907 InterPro:IPR014001 SMART:SM00487 GO:GO:0006334
GO:GO:0000786 GeneTree:ENSGT00700000104571 OMA:FEGLVKQ
EMBL:CU234205 EMBL:CU019540 Ensembl:ENSSSCT00000004555
Uniprot:F1S736
Length = 1688
Score = 220 (82.5 bits), Expect = 4.7e-24, Sum P(6) = 4.7e-24
Identities = 59/188 (31%), Positives = 91/188 (48%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
PL V W+R+ LDEAQ ++ + A L RWC+SGTP+Q ++DL+ FL
Sbjct: 812 PLVAVEWWRICLDEAQMVECPAVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLG 871
Query: 566 YDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+PY V + + P + + + L + + I+ R K ID I +PP+T
Sbjct: 872 IEPYCVKHWWVRLLYRPYCKKNP---QPLYSFIAKILWRSAKKDVIDQ---IQIPPQTEE 925
Query: 626 LTKVDFSKEEWAFYKKLES----DSLKKFKAFAD-----AGTVNQNYANILLMLLRLRQA 676
+ + FS E FY + D++ K + +D + + +IL LLRLRQA
Sbjct: 926 IHWLHFSPVERHFYHRQHEVCCQDAVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQA 985
Query: 677 CDHPLLVK 684
C HP V+
Sbjct: 986 CCHPQAVR 993
Score = 98 (39.6 bits), Expect = 4.7e-24, Sum P(6) = 4.7e-24
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIVT 444
TL++ P+S+ QW E+ V ++L VL+Y G + P LA+ D+V+ TY ++
Sbjct: 723 TLIISPSSICHQWVDEINRHVRS-SSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLR 781
Query: 445 NEV 447
+E+
Sbjct: 782 SEL 784
Score = 82 (33.9 bits), Expect = 4.7e-24, Sum P(6) = 4.7e-24
Identities = 15/21 (71%), Positives = 19/21 (90%)
Query: 297 LGGILADDQGLGKTISIIALI 317
LGGILAD+ GLGKT+ ++ALI
Sbjct: 372 LGGILADEMGLGKTVEVLALI 392
Score = 56 (24.8 bits), Expect = 4.7e-24, Sum P(6) = 4.7e-24
Identities = 8/29 (27%), Positives = 20/29 (68%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRL 882
K++VFS W +LD++ +L + +++ ++
Sbjct: 1535 KALVFSTWQDVLDIISKALTDNNMEFAQI 1563
Score = 55 (24.4 bits), Expect = 4.7e-24, Sum P(6) = 4.7e-24
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 695 SGEMAKRLPRDMLIDLLSRLE--TSSAI----CCVCSDP-PEDSVVTMCGHVFCYQCAS 746
+ ++ K+L + + + L + + TS + C +C+ + V CGH FC +C S
Sbjct: 1405 TSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICARQLGKQWAVLTCGHCFCNECIS 1463
Score = 41 (19.5 bits), Expect = 4.7e-24, Sum P(6) = 4.7e-24
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 275 LLKHQKIALAWMLQKE 290
L +Q+ A+ WMLQ+E
Sbjct: 309 LRPYQREAVNWMLQQE 324
>TAIR|locus:2064786 [details] [associations]
symbol:AT2G40770 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR013026
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS50293
PROSITE:PS51194 SMART:SM00184 SMART:SM00249 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR014001 SMART:SM00487 KO:K15710
OMA:NVESLYY IPI:IPI00517573 RefSeq:NP_181609.4 UniGene:At.25019
UniGene:At.27873 ProteinModelPortal:F4II36 PRIDE:F4II36
EnsemblPlants:AT2G40770.1 GeneID:818674 KEGG:ath:AT2G40770
Uniprot:F4II36
Length = 1664
Score = 232 (86.7 bits), Expect = 6.6e-24, Sum P(6) = 6.6e-24
Identities = 59/191 (30%), Positives = 92/191 (48%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
PL ++ W+R+ LDEAQ ++++ L K RWC++GTPIQ +DDL+ +FLK
Sbjct: 594 PLTRIFWWRICLDEAQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLFGLLKFLK 653
Query: 566 YDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+P+ V + + I+ P R + + +M R +K D + LPP+
Sbjct: 654 ANPFDVSRWWIEVIRDPYERRDTKAMEFTHKFFKQVMWRSSKVHVADE---LQLPPQEEC 710
Query: 626 LTKVDFSKEEWAFYKK---------------LESDSLKKFKAFADAGTVNQ-NYANILLM 669
++ + FS E FY + L+ D LK+ +D V A +L
Sbjct: 711 VSWLKFSAIEEHFYSRQHDTCVSYAREVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNS 770
Query: 670 LLRLRQACDHP 680
LL+LRQAC HP
Sbjct: 771 LLKLRQACCHP 781
Score = 95 (38.5 bits), Expect = 6.6e-24, Sum P(6) = 6.6e-24
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHG---GSRTKDPV----ELAKYDVVLTT 439
TL+VCPA +L QW E+ + +L IY G S +++P+ EL D+VLTT
Sbjct: 502 TLIVCPAPILPQWHSEIT-RHTRLGSLITCIYEGVRNASLSEEPMIDITELLNADIVLTT 560
Query: 440 YSIVTNEV 447
Y ++ ++
Sbjct: 561 YDVLKEDL 568
Score = 73 (30.8 bits), Expect = 6.6e-24, Sum P(6) = 6.6e-24
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 298 GGILADDQGLGKTISIIALIQMQR 321
GGILAD+ GLGKT+ ++A I R
Sbjct: 357 GGILADEMGLGKTVELLACIFSHR 380
Score = 55 (24.4 bits), Expect = 6.6e-24, Sum P(6) = 6.6e-24
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884
K +VFS W +LD++E++ + I R+ G
Sbjct: 1451 KVLVFSSWNDVLDVLEHAFAANSITCIRMKG 1481
Score = 51 (23.0 bits), Expect = 6.6e-24, Sum P(6) = 6.6e-24
Identities = 24/100 (24%), Positives = 43/100 (43%)
Query: 194 KKNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAA 253
KK+ +M + ++ S +G T+F D+ + DE + AA
Sbjct: 210 KKSMIHVMSWLRPEVMTSEARYG-----TRFN-VKDIESSVVTEDETLDSSKQSSFDAAA 263
Query: 254 LEDLNQP-KVEATLPDGLLSV--NLLKHQKIALAWMLQKE 290
+ +P K +A L D + + L +Q+ A WM+Q+E
Sbjct: 264 FYEAIKPSKTDAMLGDDIADLLPELRPYQRRAAYWMVQRE 303
Score = 43 (20.2 bits), Expect = 6.6e-24, Sum P(6) = 6.6e-24
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 721 CCVCSDPPEDS-VVTMCGHVFCYQC 744
C +C + + +V CGH C C
Sbjct: 1344 CPICHEILRNQKMVFQCGHSTCCNC 1368
>UNIPROTKB|Q8EGF3 [details] [associations]
symbol:SO_1651 "Helicase/SNF2 family domain protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 185 (70.2 bits), Expect = 1.0e-23, Sum P(4) = 1.0e-23
Identities = 54/172 (31%), Positives = 83/172 (48%)
Query: 515 VVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKS 574
+VLDEAQ IKN + +V++ +L++ + CL+GTP++N + +L S F
Sbjct: 755 IVLDEAQQIKNAQAKVSQMIKALQSPFKLCLTGTPLENHLGELKSLMDFCLPGLLGTTAY 814
Query: 575 FYSTIKIPISR-NSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSK 633
F + I R K L + +LRRTK + + LPPKT ++ K
Sbjct: 815 FNKEFRNRIERYGDSEQVKVLSQRIAPFVLRRTKA-----EVVTELPPKTEIYQSLELEK 869
Query: 634 EEWAFYKKLESDSLKKFKA-FADAGTVNQNYANILLMLLRLRQACDHPLLVK 684
++ Y+ + KK + FA G ++ L LL+LRQAC P LVK
Sbjct: 870 DQRNLYESIRLSMEKKIRELFATQGVAG-SHIEFLDALLKLRQACCDPRLVK 920
Score = 105 (42.0 bits), Expect = 1.0e-23, Sum P(4) = 1.0e-23
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 383 PAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442
P +L++CP S++ WA+E P +L++ + HG R L+++DVV+TTY +
Sbjct: 683 PHLPSLIICPTSLVGNWAKEAAKFAP---SLTLAVIHGAQRGPLLARLSEFDVVVTTYPL 739
Query: 443 VTNE 446
+ +
Sbjct: 740 MVRD 743
Score = 105 (42.0 bits), Expect = 1.0e-23, Sum P(4) = 1.0e-23
Identities = 36/111 (32%), Positives = 53/111 (47%)
Query: 216 GKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNL 275
G S+++ ++ + L +D + G+ A LE V T P L L
Sbjct: 577 GNSIALPKYR--AHLLNELAQSDISLLNGERVRQLAAKLEQFTGV-VAVTAPTQL-QAEL 632
Query: 276 LKHQKIALAWM-LQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQS 325
+Q+ L W+ KE + LGGILADD GLGKTI +A + Q+ L+S
Sbjct: 633 RPYQQQGLNWLCFLKEYQ----LGGILADDMGLGKTIQTLAFLLKQKQLKS 679
Score = 63 (27.2 bits), Expect = 1.0e-23, Sum P(4) = 1.0e-23
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSL 888
K ++FSQ+T ML L+E L I Y +L G L
Sbjct: 949 KILIFSQFTSMLILIEELLQSLEIDYSKLTGQTRL 983
Score = 37 (18.1 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 396 LRQWARELEDKVPDKAALSV 415
+R+W + +E+ VP A V
Sbjct: 461 IREWLQFIEEDVPRLQAQGV 480
>TIGR_CMR|SO_1651 [details] [associations]
symbol:SO_1651 "Snf2 family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 185 (70.2 bits), Expect = 1.0e-23, Sum P(4) = 1.0e-23
Identities = 54/172 (31%), Positives = 83/172 (48%)
Query: 515 VVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKS 574
+VLDEAQ IKN + +V++ +L++ + CL+GTP++N + +L S F
Sbjct: 755 IVLDEAQQIKNAQAKVSQMIKALQSPFKLCLTGTPLENHLGELKSLMDFCLPGLLGTTAY 814
Query: 575 FYSTIKIPISR-NSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSK 633
F + I R K L + +LRRTK + + LPPKT ++ K
Sbjct: 815 FNKEFRNRIERYGDSEQVKVLSQRIAPFVLRRTKA-----EVVTELPPKTEIYQSLELEK 869
Query: 634 EEWAFYKKLESDSLKKFKA-FADAGTVNQNYANILLMLLRLRQACDHPLLVK 684
++ Y+ + KK + FA G ++ L LL+LRQAC P LVK
Sbjct: 870 DQRNLYESIRLSMEKKIRELFATQGVAG-SHIEFLDALLKLRQACCDPRLVK 920
Score = 105 (42.0 bits), Expect = 1.0e-23, Sum P(4) = 1.0e-23
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 383 PAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSI 442
P +L++CP S++ WA+E P +L++ + HG R L+++DVV+TTY +
Sbjct: 683 PHLPSLIICPTSLVGNWAKEAAKFAP---SLTLAVIHGAQRGPLLARLSEFDVVVTTYPL 739
Query: 443 VTNE 446
+ +
Sbjct: 740 MVRD 743
Score = 105 (42.0 bits), Expect = 1.0e-23, Sum P(4) = 1.0e-23
Identities = 36/111 (32%), Positives = 53/111 (47%)
Query: 216 GKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNL 275
G S+++ ++ + L +D + G+ A LE V T P L L
Sbjct: 577 GNSIALPKYR--AHLLNELAQSDISLLNGERVRQLAAKLEQFTGV-VAVTAPTQL-QAEL 632
Query: 276 LKHQKIALAWM-LQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQS 325
+Q+ L W+ KE + LGGILADD GLGKTI +A + Q+ L+S
Sbjct: 633 RPYQQQGLNWLCFLKEYQ----LGGILADDMGLGKTIQTLAFLLKQKQLKS 679
Score = 63 (27.2 bits), Expect = 1.0e-23, Sum P(4) = 1.0e-23
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSL 888
K ++FSQ+T ML L+E L I Y +L G L
Sbjct: 949 KILIFSQFTSMLILIEELLQSLEIDYSKLTGQTRL 983
Score = 37 (18.1 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 396 LRQWARELEDKVPDKAALSV 415
+R+W + +E+ VP A V
Sbjct: 461 IREWLQFIEEDVPRLQAQGV 480
>UNIPROTKB|O53499 [details] [associations]
symbol:helZ "PROBABLE HELICASE HELZ" species:83332
"Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
GO:GO:0005618 GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842578
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
PIR:B70841 RefSeq:NP_216617.1 ProteinModelPortal:O53499 SMR:O53499
EnsemblBacteria:EBMYCT00000002428 GeneID:888635 KEGG:mtu:Rv2101
PATRIC:18153236 TubercuList:Rv2101 HOGENOM:HOG000099451 OMA:PYQERGL
ProtClustDB:CLSK872005 InterPro:IPR022138 Pfam:PF12419
Uniprot:O53499
Length = 1013
Score = 225 (84.3 bits), Expect = 7.3e-23, Sum P(3) = 7.3e-23
Identities = 70/219 (31%), Positives = 115/219 (52%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
LA+ W RVVLDEAQ +KN ++ A+A LRA R L+GTP++N + +L+S FL
Sbjct: 651 LAEYEWNRVVLDEAQAVKNSLSRAAKAVRRLRAAHRVALTGTPMENRLAELWSIMDFLNP 710
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGY----KKLQAVLRAIMLRRTKGTFIDGQPIINLPPK 622
+ F + IPI R HG+ ++L+A R +LRR K D I +LP K
Sbjct: 711 GLLGSSERFRTRYAIPIER---HGHTEPAERLRASTRPYILRRLK---TDPAIIDDLPEK 764
Query: 623 TISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ E+ + Y+ + +D ++K + G + N+L + +L+Q C+HP
Sbjct: 765 IEIKQYCQLTTEQASLYQAVVADMMEKIEN--TEGI--ERRGNVLAAMAKLKQVCNHPAQ 820
Query: 683 VKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAIC 721
+ +D VG+ SG++ RL ++L ++L+ E +C
Sbjct: 821 LL-HDRSPVGRRSGKVI-RL-EEILEEILA--EGDRVLC 854
Score = 89 (36.4 bits), Expect = 7.3e-23, Sum P(3) = 7.3e-23
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQ 324
PDG + L +Q+ LAW+ + L G LADD GLGKT+ ++AL ++ S+Q
Sbjct: 526 PDGF-TATLRPYQQRGLAWLAFLSSLGL---GSCLADDMGLGKTVQLLALETLE-SVQ 578
Score = 88 (36.0 bits), Expect = 7.3e-23, Sum P(3) = 7.3e-23
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV---ELAKYDVVLTTYSIV 443
TL++CP S++ W +E P+ L V +HGG+R L + D+V++TY+
Sbjct: 588 TLLLCPMSLVGNWPQEAARFAPN---LRVYAHHGGARLHGEALRDHLERTDLVVSTYTTA 644
Query: 444 TNEV 447
T ++
Sbjct: 645 TRDI 648
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 181 (68.8 bits), Expect = 1.1e-22, Sum P(5) = 1.1e-22
Identities = 50/177 (28%), Positives = 90/177 (50%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAV 571
W ++LDEA IKN +TQ + +RR L+GTP+QN++ +L+S FL D +
Sbjct: 903 WVYMILDEAHVIKNFKTQRWQNMLHFNTERRLLLTGTPLQNNLMELWSLMHFLMPDIFQS 962
Query: 572 YKSFYSTIKIPISRNSLHG--------YKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
++ F P++ + G +L AVLR +LRR K ++ Q +PPK
Sbjct: 963 HREFQDWFSNPVT-GMIEGGDDVNEDIINRLHAVLRPFLLRRLKKD-VEKQ----MPPKH 1016
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHP 680
+ S+ + Y++ + S ++ +G+ + +I+ +L++LR+ C+HP
Sbjct: 1017 THIVPCSMSRRQKFLYEEFINSS--STQSTLSSGS----FFSIINILMQLRKVCNHP 1067
Score = 110 (43.8 bits), Expect = 1.1e-22, Sum P(5) = 1.1e-22
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++++F+Q T+MLD+ E LN H Y RLDG+ + R + FNTD ++
Sbjct: 1397 RALIFTQMTKMLDIFETFLNLHAYTYLRLDGSTKIDKRQVLTERFNTDPKI 1447
Score = 98 (39.6 bits), Expect = 1.1e-22, Sum P(5) = 1.1e-22
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 257 LNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIAL 316
LN V +P LL L ++Q I L W++ ++L+ GILAD+ GLGKTI I+L
Sbjct: 764 LNTSNVRTKVPF-LLKFPLREYQHIGLDWLVSLYEKNLN---GILADEMGLGKTIMTISL 819
Query: 317 I 317
I
Sbjct: 820 I 820
Score = 71 (30.1 bits), Expect = 1.1e-22, Sum P(5) = 1.1e-22
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELA-----KYDVVLTTYSI 442
L+V P+SVL W E + P L + YHG SR + + V +T+YS+
Sbjct: 834 LIVVPSSVLFNWEMEFKRWCP---GLKIFTYHGTSRDRKANRKGWSKSNAFHVCITSYSM 890
Query: 443 VTNE 446
V ++
Sbjct: 891 VMSD 894
Score = 54 (24.1 bits), Expect = 1.1e-22, Sum P(5) = 1.1e-22
Identities = 24/109 (22%), Positives = 48/109 (44%)
Query: 78 QEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQAL 137
Q+KLQ++ G ++ SNG + S N + +++ P S+ I ++ +
Sbjct: 212 QDKLQLINGKVEEFCNSNGFSFYSQIFIDNLSSLTSKSLQP---TTTSSKIPTIPVEKPI 268
Query: 138 --KRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNS 184
K TLP P+ L + +S + + +S ++ T P+T +
Sbjct: 269 IEKPTLPERPKSERLK-RQQSLLNSTDSKKLSTTSTTTTTTTTPTTTTA 316
Score = 47 (21.6 bits), Expect = 5.5e-22, Sum P(5) = 5.5e-22
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 79 EKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALK 138
+KL +DD +N + D+++ + N N + I N+ S +K +S Q
Sbjct: 705 KKLDQEKSDNDDDDNNNNEDDNNNNNNNNNNNNENSISTKDIINIVS---KKANSSQPTG 761
Query: 139 RTL 141
TL
Sbjct: 762 FTL 764
Score = 47 (21.6 bits), Expect = 2.1e-16, Sum P(5) = 2.1e-16
Identities = 21/67 (31%), Positives = 29/67 (43%)
Query: 806 SSKIRTVLD-ILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRM 864
SSK R V D I+ T N+ S E+ D AGS S V + + + S+
Sbjct: 2209 SSKKRLVPDDIIVTGGVANSDKSDAELEDFAGSLEESLVSKQGGVPSTTTNSSTSRKKSE 2268
Query: 865 LDLVENS 871
DL + S
Sbjct: 2269 YDLFDAS 2275
Score = 40 (19.1 bits), Expect = 1.0e-15, Sum P(5) = 1.0e-15
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 784 GGGSPTDSPFADKS--GILDN 802
GGGS +SP + S GI N
Sbjct: 2327 GGGSDLESPISSSSISGIFIN 2347
>ASPGD|ASPL0000031617 [details] [associations]
symbol:AN10707 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 Prosite:PS00518 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:BN001305 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 InterPro:IPR017907
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HTWGVSG
EnsemblFungi:CADANIAT00003281 HOGENOM:HOG000181800 Uniprot:C8VFF9
Length = 1415
Score = 159 (61.0 bits), Expect = 8.2e-22, Sum P(4) = 8.2e-22
Identities = 53/187 (28%), Positives = 91/187 (48%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
PL K+ W+RV LDEAQ I++ + A+ + W ++GTP++ + DL FL+
Sbjct: 409 PLIKISWWRVCLDEAQMIESGISNAAKVARLIPRHIAWAVTGTPLRKDVTDLLGLLLFLR 468
Query: 566 YDPYA--VYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPP-K 622
Y+P+ ++K P+ L ++ I LR +K FI + ++LPP K
Sbjct: 469 YEPFCGPIWKRLCDATFKPV----------LARIVNTITLRHSKN-FIREE--LHLPPQK 515
Query: 623 TISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTV-----NQNYANIL----LMLLRL 673
I +T V F+ E Y++L + + +G+ N N +++ L+RL
Sbjct: 516 RIVIT-VPFTAVEEQSYRQLYEEMCEDC-GLDSSGSPRNNDWNPNDPSVIDRMRSWLVRL 573
Query: 674 RQACDHP 680
RQ+C +P
Sbjct: 574 RQSCLYP 580
Score = 108 (43.1 bits), Expect = 8.2e-22, Sum P(4) = 8.2e-22
Identities = 50/174 (28%), Positives = 77/174 (44%)
Query: 715 ETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKT 774
+ +S IC +C E V+T+CGH +C C + CP CK++LGA+ F +
Sbjct: 1061 DENSKICIICQGTFEIGVLTVCGHKYCKDCLRLWWR-QHRTCPV--CKKRLGAND-FYQI 1116
Query: 775 TLK--NCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLD--ILHTQCELNTKCSI-V 829
T K V + S S I+ ++ S+ I T + LH ++ K S
Sbjct: 1117 TYKPQEFVVQEEKSS---------SNIILEQHSSNSIYTDIGSGTLHEIKNIDLKDSFGT 1167
Query: 830 EIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLD 883
+I LA + P G +SIVFSQ+ LD + N+ + I Y +D
Sbjct: 1168 KIDTLA--RHILWLREHDP--GA-QSIVFSQYKGFLDYLANAFRRFKIGYSSVD 1216
Score = 100 (40.3 bits), Expect = 8.2e-22, Sum P(4) = 8.2e-22
Identities = 29/85 (34%), Positives = 41/85 (48%)
Query: 369 PEVXXXXXXXXXXXPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSR----- 423
PE P+ TL++ P +L QW +E+E P L V Y G R
Sbjct: 305 PEETFAEPGSNGLRPSGATLIITPPVILGQWKQEIELHAPK---LQVFHYTGIQRHPTLS 361
Query: 424 TKDPVEL-AKYDVVLTTYSIVTNEV 447
++ VEL A DVVLTTY+++ E+
Sbjct: 362 DQELVELMADNDVVLTTYNVLAREI 386
Score = 79 (32.9 bits), Expect = 8.2e-22, Sum P(4) = 8.2e-22
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 295 HCLGGILADDQGLGKTISIIALIQMQRSLQSKSKT 329
H GG+LA++ GLGKT+ +I+L+ + R + +T
Sbjct: 274 HLKGGVLAEEMGLGKTVEMISLMCLNRRILRPEET 308
Score = 58 (25.5 bits), Expect = 1.1e-19, Sum P(4) = 1.1e-19
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 258 NQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGIL 301
N P++ A + L L Q+ A+ W+L +E + L+ G ++
Sbjct: 184 NTPELSAPVKCDLTECELFPFQRRAVRWLLNREGKELNSNGQVV 227
Score = 38 (18.4 bits), Expect = 2.0e-09, Sum P(4) = 2.0e-09
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 450 QPSVDEEEADEKNGETYGLSSE 471
Q +D+E+ E G+ Y S++
Sbjct: 836 QALIDQEDESELEGDEYEKSTK 857
>POMBASE|SPBC1826.01c [details] [associations]
symbol:mot1 "TATA-binding protein associated factor
Mot1 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0017025 "TBP-class
protein binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC1826.01c GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0006355 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016887 GO:GO:0006366 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0017025 EMBL:AB027981 PIR:T39739
RefSeq:NP_596080.2 ProteinModelPortal:O43065 STRING:O43065
EnsemblFungi:SPBC1826.01c.1 GeneID:2539633 KEGG:spo:SPBC1826.01c
OrthoDB:EOG44XNQZ NextBio:20800788 Uniprot:O43065
Length = 1953
Score = 173 (66.0 bits), Expect = 9.0e-22, Sum P(4) = 9.0e-22
Identities = 66/213 (30%), Positives = 99/213 (46%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L K+ W VLDE IKN R ++ +A SLR+ R LSGTPIQN++ +L+S F FL
Sbjct: 1483 LVKIDWNYCVLDEGHVIKNARAKLTKAVKSLRSYHRLILSGTPIQNNVLELWSLFDFLMP 1542
Query: 567 DPYAVYKSFYSTIKIPI--SRNSLHGYKK-------LQAVLRAI---MLRRTKGTFIDGQ 614
K+F PI SR++ K+ L+A+ + + MLRR K +
Sbjct: 1543 GFLGTEKTFQERFVRPIAASRDAKSSSKERERGTLALEAIHKQVLPFMLRRLKEDVL--- 1599
Query: 615 PIINLPPKTISLTKVDFSKEEWA----FYKKLE-SDSLKKFKAFADAGTVNQNY--ANIL 667
+LPPK I D S + F +L ++ L+ + GT + A+I
Sbjct: 1600 --ADLPPKIIQDYYCDMSDLQRKLLNDFVSQLNINEELEDDETEKTQGTRKKKSQKAHIF 1657
Query: 668 LMLLRLRQACDHPLLVKEYDFDSVGKISGEMAK 700
L +R+ C+HP L+ I ++AK
Sbjct: 1658 QALQYMRKLCNHPALILTEKHPKRNAIVKQLAK 1690
Score = 97 (39.2 bits), Expect = 9.0e-22, Sum P(4) = 9.0e-22
Identities = 29/75 (38%), Positives = 41/75 (54%)
Query: 245 DERLIYQAALED-LNQPKVEA-TLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILA 302
D R + LE LN KVEA ++P + S +L K+Q+ + W+ LH GIL
Sbjct: 1327 DSREKERKFLEQMLNPSKVEAFSIPVPI-SADLRKYQQEGVNWLAFLNKYELH---GILC 1382
Query: 303 DDQGLGKTISIIALI 317
DD GLGKT+ I ++
Sbjct: 1383 DDMGLGKTLQTICIV 1397
Score = 96 (38.9 bits), Expect = 9.0e-22, Sum P(4) = 9.0e-22
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHG--GSRTKDPVELAKYDVVLTTYSIVT 444
+L+VCP+++ W +EL P L V Y G R K ++ K DVV+T+Y I
Sbjct: 1421 SLIVCPSTLAGHWQQELSTYAP---FLKVSAYVGPPAERAKIRSKMKKSDVVVTSYDICR 1477
Query: 445 NEVPKQPSVD 454
N+V + +D
Sbjct: 1478 NDVDELVKID 1487
Score = 85 (35.0 bits), Expect = 9.0e-22, Sum P(4) = 9.0e-22
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 837 SNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHC---IQYRRLDGTMSLPARDR 893
SNG + + + E + ++F Q MLD+VE L Q + Y RLDG++ R
Sbjct: 1723 SNGIDSALTNAVSEHRV--LIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQE 1780
Query: 894 AVKDFNTDREV 904
AV FN D +
Sbjct: 1781 AVTKFNNDPSI 1791
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 185 (70.2 bits), Expect = 1.2e-21, Sum P(4) = 1.2e-21
Identities = 74/264 (28%), Positives = 125/264 (47%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAV 571
W ++LDEAQ IKN ++Q +A ++RA+RR L+GTP+QNS+ +L+S FL ++
Sbjct: 680 WQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPLQNSLMELWSLMHFLMPTIFSS 739
Query: 572 YKSFYSTIKIPISRNSLHGYKKLQA--------VLRAIMLRRTKGTFIDGQPIINLPPKT 623
+ F P++ + G + A VLR +LRR K ++ Q LP KT
Sbjct: 740 HDDFKDWFSNPLT-GMMEGNMEFNAPLIGRLHKVLRPFILRRLKKE-VEKQ----LPEKT 793
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
+ SK + Y S + K +G N ++L ++++LR+ C+HP L
Sbjct: 794 EHIVNCSLSKRQRYLYDDFMSR--RSTKENLKSG----NMMSVLNIVMQLRKCCNHPNL- 846
Query: 684 KEYDFDSVGKISGEMAKRLPRDMLIDL--LSRLETSSAICCVCSDPPEDSVVTMCGHVFC 741
F+ ++ + ++L D+ L +S+ + SS+ S PE ++ G+
Sbjct: 847 ----FEPRPVVAPFVVEKLQLDVPARLFEISQQDPSSSSA---SQIPEIFNLSKIGYQSS 899
Query: 742 YQCASEYITGDDNMC--PAPRCKE 763
+ A I + M P PR E
Sbjct: 900 VRSAKPLIEELEAMSTYPEPRAPE 923
Score = 103 (41.3 bits), Expect = 1.2e-21, Sum P(4) = 1.2e-21
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
+ ++F+Q ++MLD+++ L+ H QY RLDGT + R ++ FN D +V
Sbjct: 1206 RCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQAMMERFNADPKV 1256
Score = 98 (39.6 bits), Expect = 1.2e-21, Sum P(4) = 1.2e-21
Identities = 31/88 (35%), Positives = 48/88 (54%)
Query: 234 SGSADER----AVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQK 289
S +DER A +E L +Q L +V+ +P L+ L ++Q + L WM+
Sbjct: 514 SQDSDERQQELANIAEEALKFQPKGYTLETTQVKTPVPF-LIRGQLREYQMVGLDWMVTL 572
Query: 290 ETRSLHCLGGILADDQGLGKTISIIALI 317
++L+ GILAD+ GLGKTI I+L+
Sbjct: 573 YEKNLN---GILADEMGLGKTIQTISLL 597
Score = 67 (28.6 bits), Expect = 1.2e-21, Sum P(4) = 1.2e-21
Identities = 21/67 (31%), Positives = 32/67 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK-------YDVVLTTY 440
L+V P SV+ W E + P AL +L Y G + K+ E K + V +T+Y
Sbjct: 611 LIVVPTSVILNWEMEFKKWCP---ALKILTYFGTA--KERAEKRKGWMKPNCFHVCITSY 665
Query: 441 SIVTNEV 447
VT ++
Sbjct: 666 KTVTQDI 672
Score = 40 (19.1 bits), Expect = 8.5e-16, Sum P(4) = 8.5e-16
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 185 KGYIRDYYVKKNDDDIMMYEGNR--ILPSSLMHGKSV 219
+G +R+Y + D + +YE N IL + GK++
Sbjct: 555 RGQLREYQMVGLDWMVTLYEKNLNGILADEMGLGKTI 591
Score = 39 (18.8 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 383 PAAGTL--VVCPASVLRQWARELEDKVPDK 410
P G L V+ P +LR+ +E+E ++P+K
Sbjct: 764 PLIGRLHKVLRPF-ILRRLKKEVEKQLPEK 792
>TIGR_CMR|BA_1804 [details] [associations]
symbol:BA_1804 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 Pfam:PF04434 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0008270 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000026038 OMA:NTLNAEM InterPro:IPR013663
Pfam:PF08455 RefSeq:NP_844228.1 RefSeq:YP_018441.1
RefSeq:YP_027937.1 ProteinModelPortal:Q81S67 IntAct:Q81S67
DNASU:1086172 EnsemblBacteria:EBBACT00000012419
EnsemblBacteria:EBBACT00000014433 EnsemblBacteria:EBBACT00000022268
GeneID:1086172 GeneID:2814636 GeneID:2849386 KEGG:ban:BA_1804
KEGG:bar:GBAA_1804 KEGG:bat:BAS1671 ProtClustDB:CLSK916372
BioCyc:BANT260799:GJAJ-1742-MONOMER
BioCyc:BANT261594:GJ7F-1813-MONOMER Uniprot:Q81S67
Length = 1064
Score = 162 (62.1 bits), Expect = 8.8e-21, Sum P(4) = 8.8e-21
Identities = 57/175 (32%), Positives = 85/175 (48%)
Query: 517 LDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFY 576
LDEAQ KN TQ ARA +++A+ R+ L+GTP++NS+++L+S F + + K F
Sbjct: 737 LDEAQAFKNPTTQTARAVKTIQAEYRFGLTGTPVENSLEELWSIFHVVFPELLPGRKEFG 796
Query: 577 STIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDF---SK 633
+ I++ ++ +LRR K + LP K L + K
Sbjct: 797 DLRREDIAKR-----------VKPFVLRRLKEDVLK-----ELPDKIEHLQSSELLPDQK 840
Query: 634 EEWAFY-KKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHP-LLVKEY 686
+A Y KL ++LK D T+ +N IL L RLRQ C HP L V +Y
Sbjct: 841 RLYAAYLAKLREETLKHL----DKDTLRKNKIRILAGLTRLRQICCHPALFVDDY 891
Score = 113 (44.8 bits), Expect = 8.8e-21, Sum P(4) = 8.8e-21
Identities = 35/124 (28%), Positives = 62/124 (50%)
Query: 195 KNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAAL 254
K ++I + + +HG+ V++ + + +G + + DE + Q +
Sbjct: 538 KEFNEINQFVKESGIRKEFLHGEEVNVPLI---RSVKWMNGLHEGNVLSLDESV--QDLV 592
Query: 255 EDLNQPK-VEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISI 313
E + PK ++ T+P L +V + ++Q WM +T + + GGILADD GLGKT+
Sbjct: 593 ESIQNPKKLKFTVPQTLRAV-MREYQVYGFEWM---KTLAYYRFGGILADDMGLGKTLQS 648
Query: 314 IALI 317
IA I
Sbjct: 649 IAYI 652
Score = 78 (32.5 bits), Expect = 8.8e-21, Sum P(4) = 8.8e-21
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEV 447
LVV P+S++ W EL+ P A+ + + R K ++A++DVV+T+Y ++ ++
Sbjct: 667 LVVSPSSLVYNWLSELKKFAPHIRAV-IADGNQAERRKILKDVAEFDVVITSYPLLRRDI 725
Score = 77 (32.2 bits), Expect = 8.8e-21, Sum P(4) = 8.8e-21
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDR 893
++FSQ+T+ML ++ LN+ I Y LDG + P+++R
Sbjct: 916 LIFSQFTKMLSIIGRELNRQAIPYFYLDG--NTPSQER 951
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 183 (69.5 bits), Expect = 8.8e-21, Sum P(5) = 8.8e-21
Identities = 55/177 (31%), Positives = 87/177 (49%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +++DEA IKN + +++ ++ R ++GTP+QN++ +L+S FL D
Sbjct: 395 KFSWRYIIIDEAHRIKNENSVLSKGVRMFNSQFRLLITGTPLQNNLHELWSLLNFLLPDV 454
Query: 569 YAVYKSFYSTIKIPIS-RNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT-ISL 626
++ F + + N KL VLR +LRR K T ++ +LPPK I L
Sbjct: 455 FSSSDDFDKWFDLANNTENQQEVIDKLHKVLRPFLLRRIK-TEVEK----SLPPKKEIKL 509
Query: 627 -TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ ++EW YK+L S L A T NI + +LR+AC+HP L
Sbjct: 510 FVGLSTMQKEW--YKRLLSKDLDAVVVGAKGNTGRVRLLNICM---QLRKACNHPYL 561
Score = 84 (34.6 bits), Expect = 8.8e-21, Sum P(5) = 8.8e-21
Identities = 14/44 (31%), Positives = 30/44 (68%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++FSQ +RMLD++E+ + +Y R+DG+ R+ +++++N
Sbjct: 601 LIFSQMSRMLDILEDYMLYRGYKYARIDGSTESIVRENSIENYN 644
Score = 83 (34.3 bits), Expect = 8.8e-21, Sum P(5) = 8.8e-21
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
P + S + +Q L W++Q R ++ GILAD+ GLGKT+ I+L+
Sbjct: 268 PPYIKSGTMRDYQVYGLNWLIQLYERGIN---GILADEMGLGKTLQTISLL 315
Score = 81 (33.6 bits), Expect = 8.8e-21, Sum P(5) = 8.8e-21
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE-----LAKYDVVLTTYSI 442
L++ P S L WA+E P L V+ +HG ++ ++ K+DV +TTY +
Sbjct: 329 LIIAPKSTLSGWAKEFTRWCP---FLRVVRFHGSKEEREDIKKNQLIFKKFDVCITTYEV 385
Query: 443 VTNE 446
E
Sbjct: 386 AIRE 389
Score = 42 (19.8 bits), Expect = 8.8e-21, Sum P(5) = 8.8e-21
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 152 TKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYE 204
TK+KS V ++SS + N + S V+S R + ++ +D+ +M E
Sbjct: 201 TKTKSPV--LSSSSASSSNNNNNNNNNGSIVSSTPTKRGHITEEAEDEAIMNE 251
>SGD|S000006003 [details] [associations]
symbol:MOT1 "Essential protein involved in regulation of
transcription" species:4932 "Saccharomyces cerevisiae" [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045898 "regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000006003 GO:GO:0005739 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0016887 EMBL:BK006949
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:U41849 GO:GO:0000228 GO:GO:0006364
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0042790 GO:GO:0045898 OrthoDB:EOG44XNQZ
EMBL:M83224 PIR:S22775 RefSeq:NP_015243.1 ProteinModelPortal:P32333
SMR:P32333 DIP:DIP-2418N IntAct:P32333 MINT:MINT-623118
STRING:P32333 PaxDb:P32333 PeptideAtlas:P32333 PRIDE:P32333
EnsemblFungi:YPL082C GeneID:856023 KEGG:sce:YPL082C CYGD:YPL082c
GeneTree:ENSGT00630000089754 NextBio:980935 Genevestigator:P32333
GermOnline:YPL082C Uniprot:P32333
Length = 1867
Score = 175 (66.7 bits), Expect = 1.9e-20, Sum P(4) = 1.9e-20
Identities = 73/242 (30%), Positives = 108/242 (44%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L K + VLDE IKN ++++A+A + A R L+GTPIQN++ +L+S F FL
Sbjct: 1397 LNKTEYNYCVLDEGHIIKNSQSKLAKAVKEITANHRLILTGTPIQNNVLELWSLFDFLMP 1456
Query: 567 DPYAVYKSFYSTIKIPI--SRNSLHGYKKLQA---VLRAI-------MLRRTKGTFIDGQ 614
K F PI SRNS K+ +A L A+ MLRR K +
Sbjct: 1457 GFLGTEKMFQERFAKPIAASRNSKTSSKEQEAGVLALEALHKQVLPFMLRRLKEDVLS-- 1514
Query: 615 PIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYAN----ILLML 670
+LPPK I D+ E K+L D KK K + N A+ I L
Sbjct: 1515 ---DLPPKIIQ----DYYCELGDLQKQLYMDFTKKQKNVVEKDIENSEIADGKQHIFQAL 1567
Query: 671 LRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLS--RLETSSAICCVCSDPP 728
+R+ C+HP LV + + ++ + K+ D L D+++ +L + C
Sbjct: 1568 QYMRKLCNHPALVLSPNHPQLAQVQ-DYLKQTGLD-LHDIINAPKLSALRTLLFECGIGE 1625
Query: 729 ED 730
ED
Sbjct: 1626 ED 1627
Score = 91 (37.1 bits), Expect = 1.9e-20, Sum P(4) = 1.9e-20
Identities = 18/66 (27%), Positives = 36/66 (54%)
Query: 384 AAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV--ELAKYDVVLTTYS 441
A +L++CP S+ W E + P L V++Y GG + + +L+ D+++T+Y
Sbjct: 1332 ALPSLIICPPSLTGHWENEFDQYAP---FLKVVVYAGGPTVRLTLRPQLSDADIIVTSYD 1388
Query: 442 IVTNEV 447
+ N++
Sbjct: 1389 VARNDL 1394
Score = 90 (36.7 bits), Expect = 1.9e-20, Sum P(4) = 1.9e-20
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 848 PIEGPI---KSIVFSQWTRMLDLVENSLNQH---CIQYRRLDGTMSLPARDRAVKDFNTD 901
PI+ I ++++F Q MLD+VEN L + + Y RLDG++ R + V+ FN D
Sbjct: 1639 PIQNVISQHRALIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNED 1698
Query: 902 REV-CSL 907
+ C L
Sbjct: 1699 PSIDCLL 1705
Score = 81 (33.6 bits), Expect = 1.9e-20, Sum P(4) = 1.9e-20
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSK 326
+ L K+Q+ + W+ LH GIL DD GLGKT+ I +I + L+ +
Sbjct: 1268 IKATLRKYQQDGVNWLAFLNKYHLH---GILCDDMGLGKTLQTICIIASDQYLRKE 1320
Score = 46 (21.3 bits), Expect = 6.5e-17, Sum P(4) = 6.5e-17
Identities = 26/102 (25%), Positives = 43/102 (42%)
Query: 123 VASADYEKISSQQALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRD-TFGNAYHLAG--- 178
VAS + E+ QQ + P+ +P L K+++ + F N YHL G
Sbjct: 1240 VASRERERDFIQQMMD---PSKAKPFKLPIAIKATLRKYQQDGVNWLAFLNKYHLHGILC 1296
Query: 179 -----PSTVNSKGYIR-DYYVKKNDDDIMMYEGNRILPSSLM 214
T+ + I D Y++K D + +R LPS ++
Sbjct: 1297 DDMGLGKTLQTICIIASDQYLRKEDYEKTRSVESRALPSLII 1338
Score = 37 (18.1 bits), Expect = 1.9e-11, Sum P(3) = 1.9e-11
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 432 KYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYG 467
K++ +T V V PS D E+D G G
Sbjct: 57 KWETRVTAARAVGGIVAHAPSWDPNESDLVGGTNEG 92
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 152 (58.6 bits), Expect = 5.1e-20, Sum P(4) = 5.1e-20
Identities = 56/220 (25%), Positives = 102/220 (46%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAV 571
W VV+DE +KNH+ ++ R L+ + L+GTP+QN++ +L+S F+ D +
Sbjct: 327 WKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFILPDIFTS 386
Query: 572 YKSFYSTIKIPISRNSLHGYK------------KLQAVLRAIMLRRTKGTFIDGQPIINL 619
+ F S +N K KL +LR +LRR K D + ++L
Sbjct: 387 HDEFESWFDFS-EKNKNEATKEEEEKRRAQVVSKLHGILRPFILRRMK---CDVE--LSL 440
Query: 620 PPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL-MLLRLRQACD 678
P K + + + F + L +++L+ + Q + L ++++LR+ C+
Sbjct: 441 PRKKEIIMYATMTDHQKKFQEHLVNNTLEAH--LGENAIRGQGWKGKLNNLVIQLRKNCN 498
Query: 679 HPLLVK-----EYDFDSVGKISGEMAK-RLPRDMLIDLLS 712
HP L++ Y + V +I G+ K RL +L+ L +
Sbjct: 499 HPDLLQGQIDGSYLYPPVEEIVGQCGKFRLLERLLVRLFA 538
Score = 118 (46.6 bits), Expect = 5.1e-20, Sum P(4) = 5.1e-20
Identities = 19/54 (35%), Positives = 37/54 (68%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREVCSL 907
K ++FSQWT++LD+++ ++ + R+DG++ L R R +KDF+ ++ CS+
Sbjct: 542 KVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSI 595
Score = 80 (33.2 bits), Expect = 5.1e-20, Sum P(4) = 5.1e-20
Identities = 19/70 (27%), Positives = 34/70 (48%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKD-------PVELA-KYDVVLTT 439
LV+ P S L W E+ P +++ +IYHG +D P + K+ +V+T+
Sbjct: 254 LVIAPLSTLSNWFNEIARFTP---SINAIIYHGDKNQRDELRRKHMPKTVGPKFPIVITS 310
Query: 440 YSIVTNEVPK 449
Y + N+ +
Sbjct: 311 YEVAMNDAKR 320
Score = 66 (28.3 bits), Expect = 5.1e-20, Sum P(4) = 5.1e-20
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 270 LLSVNLLK-HQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
LL+ LK +Q + W++ L+ GILAD GLGKTI I +
Sbjct: 196 LLTGGQLKSYQLKGVKWLISLWQNGLN---GILADQMGLGKTIQTIGFL 241
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 205 (77.2 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
Identities = 62/216 (28%), Positives = 109/216 (50%)
Query: 505 GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFL 564
G L + W + +DEA +KN + + + R+ R ++GTP+QNS+ +L+S FL
Sbjct: 609 GVLGNINWAFLGVDEAHRLKNDDSLLYKTLIDFRSNHRLLITGTPLQNSLKELWSLLHFL 668
Query: 565 KYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTI 624
D + ++ F + +GY+ L VL +LRR K D + +LP K
Sbjct: 669 MSDKFESWEDFEDEH----GKGRDNGYQSLHKVLEPFLLRRVKK---DVEK--SLPAKVE 719
Query: 625 SLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK 684
+ +VD S ++ FYK + + + FKA + GT + + L +++ L++ C+H L+K
Sbjct: 720 QILRVDMSAQQKQFYKWILT---RNFKALSK-GTRGSS-SGFLNIVMELKKCCNHAFLIK 774
Query: 685 EYDFDSVGKISGEMAKRLPRD----MLID-LLSRLE 715
+ + D E + L R +L+D LL+RL+
Sbjct: 775 QPE-DGENDAPQEHLQSLVRGGGKLVLLDKLLTRLK 809
Score = 89 (36.4 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
++FSQ RMLD++ + L+ Q++RLDG++ R +A+ FN + + C L
Sbjct: 816 LIFSQMVRMLDILADYLSMKRYQFQRLDGSIKGELRKQALDHFNAEGSEDFCFL 869
Score = 70 (29.7 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRT--KD-----P-VELAKYDVVL 437
+VV P S L W RE + PD ++V++Y G SR +D P + K++ +L
Sbjct: 542 IVVVPLSTLTSWQREFDTWAPD---MNVVVYLGDVTSRKTIRDYEWINPQTKRIKFNALL 598
Query: 438 TTYSIVTNE 446
TTY I+ +
Sbjct: 599 TTYEILLKD 607
Score = 63 (27.2 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++ L +Q + W+ R C ILAD+ GLGKTI I+ +
Sbjct: 486 NLELRDYQLDGVNWLAHSWCR---CNSVILADEMGLGKTIQTISFL 528
>TIGR_CMR|BA_5487 [details] [associations]
symbol:BA_5487 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000099451 InterPro:IPR022138 Pfam:PF12419
RefSeq:NP_847649.1 RefSeq:YP_022153.1 RefSeq:YP_031335.1
ProteinModelPortal:Q81K50 IntAct:Q81K50 DNASU:1085116
EnsemblBacteria:EBBACT00000010571 EnsemblBacteria:EBBACT00000018432
EnsemblBacteria:EBBACT00000022093 GeneID:1085116 GeneID:2819120
GeneID:2852260 KEGG:ban:BA_5487 KEGG:bar:GBAA_5487 KEGG:bat:BAS5096
OMA:ASTIYEF ProtClustDB:CLSK888016
BioCyc:BANT260799:GJAJ-5171-MONOMER
BioCyc:BANT261594:GJ7F-5349-MONOMER Uniprot:Q81K50
Length = 918
Score = 225 (84.3 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 65/221 (29%), Positives = 114/221 (51%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L+ + W V+LDEAQ IKN T+ ++A +L+A + L+GTP++N + +L+S F F+ +
Sbjct: 566 LSTLCWDAVILDEAQNIKNPHTKQSKAVRNLQANHKIALTGTPMENRLAELWSIFDFINH 625
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAI---MLRRTKGTFIDGQPIINLPPKT 623
F PI ++ G K+Q V R I +LRRTK D +NLP K
Sbjct: 626 GYLGSLGQFQRRFVSPIEKDRDEG--KIQQVQRFISPFLLRRTKK---DQTVALNLPDKQ 680
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL- 682
+ E+ + Y++L D+L+ + + G + + ILLML +L+Q C+HP L
Sbjct: 681 EQKAYCPLTGEQASLYEQLVQDTLQNVEGLS--GIERRGF--ILLMLNKLKQICNHPALY 736
Query: 683 VKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCV 723
+KE + + + + + L++L+ ++ + C +
Sbjct: 737 LKETEPKDI------IERSMKTSTLMELIENIKDQNESCLI 771
Score = 88 (36.0 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 33/97 (34%), Positives = 51/97 (52%)
Query: 249 IYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLG 308
++Q L + PKV+ +P L L +Q+ + W+L R L G +LADD GLG
Sbjct: 428 LFQKLLHIGDIPKVD--VPSSL-HATLRPYQQHGIEWLLY--LRKLG-FGALLADDMGLG 481
Query: 309 KTISIIA-LIQM-QRSLQSK-----SKTEVLGNQKTE 338
K+I I L+ + + +LQ+ + T VLGN + E
Sbjct: 482 KSIQTITYLLYIKENNLQTGPALIVAPTSVLGNWQKE 518
Score = 84 (34.6 bits), Expect = 4.9e-19, Sum P(3) = 4.9e-19
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVE--LAKYDVVLTTYSI 442
L+V P SVL W +E E P+ L V +++G +R K + + L DVVLT+Y++
Sbjct: 504 LIVAPTSVLGNWQKEFERFAPN---LRVQLHYGSNRAKGESFKDFLQSADVVLTSYAL 558
Score = 54 (24.1 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQ-YRRLDGTMSLPARDRAVKDF 898
++F+Q+ M ++++N L +H Q L+G++ RD+ ++ F
Sbjct: 770 LIFTQYIGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQF 813
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 177 (67.4 bits), Expect = 3.2e-19, Sum P(4) = 3.2e-19
Identities = 53/177 (29%), Positives = 88/177 (49%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +V+DEA IKN +++++ + R L+GTP+QN++ +L+S FL D
Sbjct: 262 KFNWRYLVIDEAHRIKNEKSKLSEIAREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 321
Query: 569 YAVYKSFYSTIKIPISRNSLHGYK---KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+ F S N L K +L AVLR +LRR K ++ +LPPK
Sbjct: 322 FNSASDFDSWF----DTNCLGDQKLVERLHAVLRPFLLRRIKAE-VEK----SLPPKKEV 372
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ SK + +Y ++ +K AG +++ +L +L++LR+ C+HP L
Sbjct: 373 KIYLGLSKMQREWYTRI---LMKDIDILNSAGKMDK--MRLLNILMQLRKCCNHPYL 424
Score = 88 (36.0 bits), Expect = 3.2e-19, Sum P(4) = 3.2e-19
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++FSQ TR+LD++E+ +Y RLDG AR++A+ FN
Sbjct: 465 LIFSQMTRVLDILEDYCMWRGFEYCRLDGNTPHEAREQAIDAFN 508
Score = 83 (34.3 bits), Expect = 3.2e-19, Sum P(4) = 3.2e-19
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 245 DERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADD 304
DE L+ ++ D + E + P + + L +Q L WM+ ++ GILAD+
Sbjct: 114 DEELLSESRKADNVLVRFEES-PSYIKNGTLRDYQIRGLNWMISLYENGIN---GILADE 169
Query: 305 QGLGKTISIIALI 317
GLGKT+ IAL+
Sbjct: 170 MGLGKTLQTIALL 182
Score = 65 (27.9 bits), Expect = 3.2e-19, Sum P(4) = 3.2e-19
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT---KDPVELAKYDVVLTTYSIVT 444
+V+ P S L W E + VP A+ LI + R +D + ++DV +T+Y +V
Sbjct: 196 MVLVPKSTLHNWMNEFKRWVPTLKAVC-LIGNKDERAAFIRDVMMPGEWDVCVTSYEMVI 254
Query: 445 NE 446
E
Sbjct: 255 RE 256
Score = 49 (22.3 bits), Expect = 8.7e-16, Sum P(4) = 8.7e-16
Identities = 21/88 (23%), Positives = 40/88 (45%)
Query: 134 QQALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYV 193
+Q K+ L + T+ + E ++ S+ D + PS + + G +RDY +
Sbjct: 91 KQDEKQNLLSVGDNRHRRTEQEEDEELLSESRKADNVLVRFE-ESPSYIKN-GTLRDYQI 148
Query: 194 KKNDDDIMMYEG--NRILPSSLMHGKSV 219
+ + I +YE N IL + GK++
Sbjct: 149 RGLNWMISLYENGINGILADEMGLGKTL 176
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 181 (68.8 bits), Expect = 3.4e-19, Sum P(4) = 3.4e-19
Identities = 53/178 (29%), Positives = 94/178 (52%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK---YDP 568
W ++LDEAQ IKN ++Q ++ + ++RR L+GTP+QNS+ +L+S FL +
Sbjct: 750 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 809
Query: 569 YAVYKSFYS---TIKIPISRNSLHGY-KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTI 624
+ +K ++S T I S+ G K+L VLR +LRR K +D + +P K
Sbjct: 810 HREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVK---VDVEK--QMPKKYE 864
Query: 625 SLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ + SK + Y + + K + A ++ +++ +L++LR+ C+HP L
Sbjct: 865 HVIRCRLSKRQRCLYDDFMAQTTTK-ETLATG-----HFMSVINILMQLRKVCNHPNL 916
Score = 107 (42.7 bits), Expect = 3.4e-19, Sum P(4) = 3.4e-19
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 820 CELNTKCSIVEI--HDLAGSNGSSAVHSKS-PIEGPIKSIVFSQWTRMLDLVENSLNQHC 876
C + T+ + + +D AG + AV + EG + ++F+Q TRMLD++E L H
Sbjct: 2013 CNMRTQFPDLRLIQYDCAGKLQTLAVLLRQLKAEGH-RVLIFTQMTRMLDVLEQFLTYHG 2071
Query: 877 IQYRRLDGTMSLPARDRAVKDFNTDREV 904
Y RLDG+ + R ++ FN D+ +
Sbjct: 2072 HLYLRLDGSTRVEQRQALMERFNADKRI 2099
Score = 89 (36.4 bits), Expect = 3.4e-19, Sum P(4) = 3.4e-19
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 261 KVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+V+ +P LL L ++Q I L W++ + L+ GILAD+ GLGKTI I+L+
Sbjct: 615 QVKTPIPL-LLRGQLREYQHIGLDWLVTMYEKKLN---GILADEMGLGKTIQTISLL 667
Score = 57 (25.1 bits), Expect = 3.4e-19, Sum P(4) = 3.4e-19
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELA-----KYDVVLTTYSI 442
L++ P SV+ W EL+ P + +L Y+G + + + V +T+Y +
Sbjct: 681 LIIVPTSVMLNWEMELKRWCP---SFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 737
Query: 443 VTNE 446
V +
Sbjct: 738 VLQD 741
Score = 41 (19.5 bits), Expect = 5.2e-05, Sum P(4) = 5.2e-05
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 631 FSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM 669
F ++ W + E+ ++K FK+ +N N LL+
Sbjct: 745 FRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLL 783
Score = 39 (18.8 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 450 QPSVDEEEADEKNGETYGLSSEFSVNKKRKKI 481
QP +EEE DE+ E +R++I
Sbjct: 292 QPQEEEEEDDEETIEVEEQQEGNDAETQRREI 323
Score = 39 (18.8 bits), Expect = 2.3e-12, Sum P(4) = 2.3e-12
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 703 PRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVF 740
PR I +S E+S C P S+ T H F
Sbjct: 2748 PRSPSIHSMSGPESSPPSSGPCEAAPTSSLSTPTQHTF 2785
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 203 (76.5 bits), Expect = 4.3e-19, Sum P(4) = 4.3e-19
Identities = 50/180 (27%), Positives = 95/180 (52%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L ++ W V++DEA +KN ++ + + + + L+GTP+QN++++L+S F
Sbjct: 160 CPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHF 219
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + F + + +KLQA+L+ +MLRR K D + NL PK
Sbjct: 220 LEPSQFPSESEFLKDFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--NLAPKQ 271
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K +F G + N N+L ++ LR+ C+HP L+
Sbjct: 272 ETIIEVELTNIQKKYYRAI----LEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 327
Score = 77 (32.2 bits), Expect = 4.3e-19, Sum P(4) = 4.3e-19
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F+
Sbjct: 374 GGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 422
Score = 70 (29.7 bits), Expect = 4.3e-19, Sum P(4) = 4.3e-19
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318
L ++Q + W+L +C ILAD+ GLGKTI IA +Q
Sbjct: 37 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFLQ 77
Score = 56 (24.8 bits), Expect = 4.3e-19, Sum P(4) = 4.3e-19
Identities = 15/83 (18%), Positives = 36/83 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
LV+ P S + W RE ++ ++YHG ++ ++
Sbjct: 89 LVIAPLSTITNWEREFNTWTE----MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAY 144
Query: 432 KYDVVLTTYSIVTNEVPKQPSVD 454
K+D ++TT+ ++ ++ P+ ++
Sbjct: 145 KFDALITTFEMILSDCPELREIE 167
>TAIR|locus:2062999 [details] [associations]
symbol:BRM "AT2G46020" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010199 "organ boundary specification between
lateral organs and the meristem" evidence=IGI] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=NAS;TAS] [GO:0040029
"regulation of gene expression, epigenetic" evidence=RCA;IMP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00951
GO:GO:0005829 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0004386
EMBL:AC005397 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 EMBL:AC004665
EMBL:AJ703891 IPI:IPI00529654 IPI:IPI00541940 PIR:G84897
RefSeq:NP_182126.2 RefSeq:NP_973695.1 UniGene:At.48598
ProteinModelPortal:Q6EVK6 SMR:Q6EVK6 IntAct:Q6EVK6 STRING:Q6EVK6
PaxDb:Q6EVK6 PRIDE:Q6EVK6 EnsemblPlants:AT2G46020.2 GeneID:819210
KEGG:ath:AT2G46020 TAIR:At2g46020 HOGENOM:HOG000029719
InParanoid:Q6EVK6 KO:K11647 OMA:EMNAPKE PhylomeDB:Q6EVK6
ProtClustDB:CLSN2681222 ArrayExpress:Q6EVK6 Genevestigator:Q6EVK6
GO:GO:0010199 GO:GO:0040029 Uniprot:Q6EVK6
Length = 2193
Score = 136 (52.9 bits), Expect = 5.0e-19, Sum P(6) = 5.0e-19
Identities = 33/109 (30%), Positives = 56/109 (51%)
Query: 500 IDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYS 559
I Y L+KV W +++DEAQ +K+ + +AR R +RR L+GTP+QN + +L+S
Sbjct: 1091 IMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWS 1150
Query: 560 YFRFLKYDPYAVYKSFYSTIKIPISRNS-LHGYKK--LQAVLRAIMLRR 605
L D + K+F+ P + H + L+ + I++ R
Sbjct: 1151 LLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHR 1199
Score = 105 (42.0 bits), Expect = 5.0e-19, Sum P(6) = 5.0e-19
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREVC 905
++FS T++LD++E L + YRR+DGT SL R+ A+ DFN C
Sbjct: 1328 LLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDC 1377
Score = 95 (38.5 bits), Expect = 5.0e-19, Sum P(6) = 5.0e-19
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
P L + L +Q + L WML L+ GILAD+ GLGKT+ ++ALI
Sbjct: 973 PSMLQAGTLRDYQLVGLQWMLSLYNNKLN---GILADEMGLGKTVQVMALI 1020
Score = 70 (29.7 bits), Expect = 5.0e-19, Sum P(6) = 5.0e-19
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHG--GSRTK---DPVELAKYDVVLTTYSI 442
L++ P +VL W EL +P ++S + Y G R+K V K++V++TTY
Sbjct: 1034 LIIVPNAVLVNWKSELHTWLP---SVSCIYYVGTKDQRSKLFSQEVCAMKFNVLVTTYEF 1090
Query: 443 VTNEVPKQPSVD 454
+ + K VD
Sbjct: 1091 IMYDRSKLSKVD 1102
Score = 60 (26.2 bits), Expect = 5.0e-19, Sum P(6) = 5.0e-19
Identities = 28/108 (25%), Positives = 47/108 (43%)
Query: 593 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKF-- 650
+L +L MLRR + ++G +LP K + + S + A Y +++ +
Sbjct: 1199 RLHQILEPFMLRR-RVEDVEG----SLPAKVSVVLRCRMSAIQSAVYDWIKATGTLRVDP 1253
Query: 651 ---KAFADAGTVNQN--YANILLMLLRLRQACDHPLLVKEYDFDSVGK 693
K A + Q Y + + LR+AC+HPLL Y F+ K
Sbjct: 1254 DDEKLRAQKNPIYQAKIYRTLNNRCMELRKACNHPLLNYPY-FNDFSK 1300
Score = 49 (22.3 bits), Expect = 5.0e-19, Sum P(6) = 5.0e-19
Identities = 39/161 (24%), Positives = 69/161 (42%)
Query: 122 NVASADYE-KISSQQALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTF--GNAYHLAG 178
NVAS ISSQ A +P PH+ N+ S S ++ S++ R G+ +
Sbjct: 299 NVASQSPSIPISSQPASSSVVPGENSPHA-NSASDISGQS-GSAKARHALSTGSFASTSS 356
Query: 179 PSTVNSKGYIRDYYVKKNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSAD 238
P VN + + + ++ MY + + P++ M + T + + ++ S
Sbjct: 357 PRMVNPA--MNPFSGQGRENP--MYPRHLVQPTNGMPSGNPLQTS-ANETPVLDQNAST- 410
Query: 239 ERAVGGDERLIYQAALEDLNQPKVEATLPD--GLLSVNLLK 277
++++G E L Q + LN P P G LS + L+
Sbjct: 411 KKSLGPAEHLQMQQPRQ-LNTPTPNLVAPSDTGPLSNSSLQ 450
Score = 45 (20.9 bits), Expect = 3.5e-13, Sum P(6) = 3.5e-13
Identities = 18/73 (24%), Positives = 30/73 (41%)
Query: 783 DGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSA 842
DG P P +D Y SK+RTV+D ++ + + S + +S
Sbjct: 1799 DGSEMPAAQPLQ-----VDRSY-RSKLRTVVDSHSSRQDQSDSSSRLRSVPAKKVASTSK 1852
Query: 843 VHSKSPIEGPIKS 855
+H SP G + +
Sbjct: 1853 LHVSSPKSGRLNA 1865
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 177 (67.4 bits), Expect = 5.7e-19, Sum P(4) = 5.7e-19
Identities = 49/176 (27%), Positives = 89/176 (50%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L K+ W +++DEA IKN +++++ L ++ R ++GTP+QN++ +L++ FL
Sbjct: 249 LKKLNWRYIIIDEAHRIKNEKSKLSETVRELNSENRLLITGTPLQNNLHELWALLNFLLP 308
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
D + F S + ++L VL+ +LRR K D + + LP K + +
Sbjct: 309 DIFTSSDDFDSWFSNDAMSGNTDLVQRLHKVLQPFLLRRIKS---DVEKSL-LPKKEVKV 364
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
V SK + +Y K+ +K AG V + A ++ +L+ LR+ +HP L
Sbjct: 365 Y-VGLSKMQREWYTKV---LMKDIDIINGAGKVEK--ARLMNILMHLRKCVNHPYL 414
Score = 80 (33.2 bits), Expect = 5.7e-19, Sum P(4) = 5.7e-19
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++FSQ++RMLDL+E+ +Y RLDG+ R A++ +N
Sbjct: 455 LIFSQFSRMLDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIEAYN 498
Score = 77 (32.2 bits), Expect = 5.7e-19, Sum P(4) = 5.7e-19
Identities = 28/118 (23%), Positives = 51/118 (43%)
Query: 225 GGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVN---------- 274
G P D R + + + GD R ED + +A D L+ +
Sbjct: 73 GAPVDTKKRGRPSKKNGIDGDHRHRKTEQEED-EEMVADAIKSDDLVIFDKSPFYIENGE 131
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVL 332
+ +Q L W+ + ++ GILAD+ GLGKT+ I++I + ++K+ ++
Sbjct: 132 MRDYQVRGLNWLASLQHNKIN---GILADEMGLGKTLQTISMIGYMKHYKNKASPHLV 186
Score = 76 (31.8 bits), Expect = 5.7e-19, Sum P(4) = 5.7e-19
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 384 AAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT---KDPVELAKYDVVLTTY 440
A+ LV+ P S L+ WA E + P A+ VLI +R +D + K+DV TTY
Sbjct: 181 ASPHLVIVPKSTLQNWANEFKKWCPSINAV-VLIGDEAARNQVLRDVILPQKFDVCCTTY 239
Query: 441 SIV 443
++
Sbjct: 240 EMM 242
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 197 (74.4 bits), Expect = 7.1e-19, Sum P(4) = 7.1e-19
Identities = 65/211 (30%), Positives = 113/211 (53%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK- 565
L + WF +V+DEA IKN ++ ++ + LR++ R ++GTP+ N++ +L+S FL
Sbjct: 438 LYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMP 497
Query: 566 --YDPYAVYKSFYSTIKIPISRNSLHGY-KKLQAVLRAIMLRRTKGTFIDGQPIINLPPK 622
+D + + ++ KI + N +L +L+ MLRR K ++ + +LPPK
Sbjct: 498 KIFDNSEEFDNLFNISKISTNDNKQSEIITQLHTILKPFMLRRLK---VEVEQ--SLPPK 552
Query: 623 TISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
V SK + KKL SD L K +A T ++N +L +L++LR+ C+HP L
Sbjct: 553 REIYIFVGMSKLQ----KKLYSDILSKNIDVLNAMTGSKN--QMLNILMQLRKCCNHPYL 606
Query: 683 ---VKEYDF---DSVGKISGEMA---KRLPR 704
++E + + + + SG+M+ K LPR
Sbjct: 607 FDGIEEPPYIEGNHLIETSGKMSLLDKLLPR 637
Score = 79 (32.9 bits), Expect = 7.1e-19, Sum P(4) = 7.1e-19
Identities = 24/79 (30%), Positives = 44/79 (55%)
Query: 254 LEDLNQPKVEATLPDGLLSVN--LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKT- 310
L+D N+ EA + +++N + +Q L W+ Q ++ GILAD+ GLGKT
Sbjct: 300 LKDANEED-EAIILKQPMNINGTMKPYQLEGLNWLYQLYRFKIN---GILADEMGLGKTL 355
Query: 311 --ISIIALIQMQRSLQSKS 327
IS++ ++ ++++ KS
Sbjct: 356 QTISLLCYLRFNKNIKKKS 374
Score = 70 (29.7 bits), Expect = 7.1e-19, Sum P(4) = 7.1e-19
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVK--DFN 899
++FSQ TR+LD++++ Y R+DG S P +R V+ FN
Sbjct: 646 LLFSQMTRLLDIIDDYCRWKNYPYLRIDG--STPGDERQVRINQFN 689
Score = 69 (29.3 bits), Expect = 7.1e-19, Sum P(4) = 7.1e-19
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL----AKYDVVLTTYSI 442
++++CP S L W E++ A Y+G + + + +DV+LTTY I
Sbjct: 374 SIIICPRSTLDNWYEEIKKWCTPMKAFK---YYGNKDQRKELNRNLLHSDFDVLLTTYEI 430
Query: 443 VTNE 446
V +
Sbjct: 431 VIKD 434
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 197 (74.4 bits), Expect = 7.1e-19, Sum P(4) = 7.1e-19
Identities = 65/211 (30%), Positives = 113/211 (53%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK- 565
L + WF +V+DEA IKN ++ ++ + LR++ R ++GTP+ N++ +L+S FL
Sbjct: 438 LYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMP 497
Query: 566 --YDPYAVYKSFYSTIKIPISRNSLHGY-KKLQAVLRAIMLRRTKGTFIDGQPIINLPPK 622
+D + + ++ KI + N +L +L+ MLRR K ++ + +LPPK
Sbjct: 498 KIFDNSEEFDNLFNISKISTNDNKQSEIITQLHTILKPFMLRRLK---VEVEQ--SLPPK 552
Query: 623 TISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
V SK + KKL SD L K +A T ++N +L +L++LR+ C+HP L
Sbjct: 553 REIYIFVGMSKLQ----KKLYSDILSKNIDVLNAMTGSKN--QMLNILMQLRKCCNHPYL 606
Query: 683 ---VKEYDF---DSVGKISGEMA---KRLPR 704
++E + + + + SG+M+ K LPR
Sbjct: 607 FDGIEEPPYIEGNHLIETSGKMSLLDKLLPR 637
Score = 79 (32.9 bits), Expect = 7.1e-19, Sum P(4) = 7.1e-19
Identities = 24/79 (30%), Positives = 44/79 (55%)
Query: 254 LEDLNQPKVEATLPDGLLSVN--LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKT- 310
L+D N+ EA + +++N + +Q L W+ Q ++ GILAD+ GLGKT
Sbjct: 300 LKDANEED-EAIILKQPMNINGTMKPYQLEGLNWLYQLYRFKIN---GILADEMGLGKTL 355
Query: 311 --ISIIALIQMQRSLQSKS 327
IS++ ++ ++++ KS
Sbjct: 356 QTISLLCYLRFNKNIKKKS 374
Score = 70 (29.7 bits), Expect = 7.1e-19, Sum P(4) = 7.1e-19
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVK--DFN 899
++FSQ TR+LD++++ Y R+DG S P +R V+ FN
Sbjct: 646 LLFSQMTRLLDIIDDYCRWKNYPYLRIDG--STPGDERQVRINQFN 689
Score = 69 (29.3 bits), Expect = 7.1e-19, Sum P(4) = 7.1e-19
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL----AKYDVVLTTYSI 442
++++CP S L W E++ A Y+G + + + +DV+LTTY I
Sbjct: 374 SIIICPRSTLDNWYEEIKKWCTPMKAFK---YYGNKDQRKELNRNLLHSDFDVLLTTYEI 430
Query: 443 VTNE 446
V +
Sbjct: 431 VIKD 434
>UNIPROTKB|F1NVT7 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00818616
Ensembl:ENSGALT00000040615 ArrayExpress:F1NVT7 Uniprot:F1NVT7
Length = 1257
Score = 212 (79.7 bits), Expect = 7.9e-19, Sum P(4) = 7.9e-19
Identities = 52/180 (28%), Positives = 94/180 (52%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L K+ W VV+DEA +KN ++ + + + L+GTP+QNS+++L+S F
Sbjct: 506 CPELKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNF 565
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + +F + + KKLQ++L+ +MLRR K D + NL PK
Sbjct: 566 LEPQQFPSETAFLEEFGDLKTEEQV---KKLQSILKPMMLRRLKD---DVEK--NLAPKQ 617
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K +F G N N++ ++ LR+ C+HP L+
Sbjct: 618 ETIIEVELTNIQKKYYRAI----LEKNFSFLSKGANQHNMPNLINTMMELRKCCNHPYLI 673
Score = 81 (33.6 bits), Expect = 7.9e-19, Sum P(4) = 7.9e-19
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 849 IEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF---NTDREV 904
I G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F ++DR V
Sbjct: 718 IAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFV 776
Score = 63 (27.2 bits), Expect = 7.9e-19, Sum P(4) = 7.9e-19
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S L ++Q + W+L +C ILAD+ GLGKTI I +
Sbjct: 380 SNQLREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 422
Score = 55 (24.4 bits), Expect = 7.9e-19, Sum P(4) = 7.9e-19
Identities = 15/78 (19%), Positives = 34/78 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
L++ P S + W RE ++ ++YHG ++ ++ +
Sbjct: 435 LIIAPLSTITNWEREFRTWTE----MNAIVYHGSQISRQMIQQYEMVYRDTQGNPLPGIF 490
Query: 432 KYDVVLTTYSIVTNEVPK 449
K+ VV+TT+ ++ + P+
Sbjct: 491 KFQVVITTFEMILADCPE 508
>UNIPROTKB|I3LDG1 [details] [associations]
symbol:LOC100738357 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00560000077077 EMBL:FP236283
Ensembl:ENSSSCT00000031310 OMA:ENWRTEL Uniprot:I3LDG1
Length = 323
Score = 211 (79.3 bits), Expect = 8.5e-19, Sum P(2) = 8.5e-19
Identities = 51/180 (28%), Positives = 94/180 (52%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L K+ W V++DEA +KN ++ + + + L+GTP+QNS+++L+S F
Sbjct: 6 CPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNF 65
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + +F + + KKLQ++L+ +MLRR K D + NL PK
Sbjct: 66 LEPSQFPSETAFLEEFGDLKTEEQV---KKLQSILKPMMLRRLKD---DVEK--NLAPKQ 117
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K +F G N N++ ++ LR+ C+HP L+
Sbjct: 118 ETIIEVELTNIQKKYYRAI----LEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLI 173
Score = 81 (33.6 bits), Expect = 8.5e-19, Sum P(2) = 8.5e-19
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 849 IEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF---NTDREV 904
I G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F ++DR V
Sbjct: 218 IAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFV 276
>ZFIN|ZDB-GENE-070228-1 [details] [associations]
symbol:ercc6 "excision repair cross-complementing
rodent repair deficiency, complementation group 6" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-070228-1 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
EMBL:CR762493 IPI:IPI00933448 RefSeq:XP_688972.2
Ensembl:ENSDART00000112380 GeneID:560477 KEGG:dre:560477
NextBio:20883461 Bgee:F1RDN1 Uniprot:F1RDN1
Length = 1390
Score = 155 (59.6 bits), Expect = 1.7e-18, Sum P(4) = 1.7e-18
Identities = 47/180 (26%), Positives = 79/180 (43%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
+ + W V+LDE I+N V AC R R+ LSG+P+QN++ +L+S F F+
Sbjct: 612 IQRYDWHYVILDEGHKIRNPNAGVTTACKQFRTPHRFILSGSPMQNNLKELWSLFDFVFP 671
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQ---AVLRAIMLRRTKGTFIDGQPIINLPPKT 623
F +PI+ +Q A A +LR T ++ + ++
Sbjct: 672 GKLGTLPVFMEQFSVPITMGGYANASPVQVQTAYKCACVLRDTINPYLLRRMKADVKAN- 730
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQ---NYANILLMLLRLRQACDHP 680
+SL K E + +L D + ++ F D+ V Q + L+ LR+ C+HP
Sbjct: 731 LSLP----DKNEQVLFCRLTEDQRQVYQTFLDSKEVYQILNGDMQVFSGLIALRKICNHP 786
Score = 101 (40.6 bits), Expect = 1.7e-18, Sum P(4) = 1.7e-18
Identities = 24/51 (47%), Positives = 30/51 (58%)
Query: 269 GLLSVNLLKHQKIALAWMLQKETRSLHC--LGGILADDQGLGKTISIIALI 317
G L L K+Q+ + WM + LHC GGIL D+ GLGKTI IIA +
Sbjct: 478 GFLWKKLFKYQQTGVRWMWE-----LHCQQAGGILGDEMGLGKTIQIIAFL 523
Score = 79 (32.9 bits), Expect = 1.7e-18, Sum P(4) = 1.7e-18
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHG-GSRT--KD---PVELAKYDVVLTTY 440
T++VCPA+V+ QW +E P V + H GS T K+ P +A + +++T+Y
Sbjct: 546 TVIVCPATVMHQWVKEFHTWWPP---FRVAVLHDTGSFTSKKEKLIPEIVASHGILITSY 602
Query: 441 SIV 443
S +
Sbjct: 603 SYI 605
Score = 78 (32.5 bits), Expect = 1.7e-18, Sum P(4) = 1.7e-18
Identities = 12/49 (24%), Positives = 32/49 (65%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++F+Q +ML+++E + ++ Y ++DGT ++ +R + FN ++++
Sbjct: 837 LLFTQSRQMLEILEVFVKENGFSYLKMDGTTTIASRQPLIAQFNQNKDI 885
Score = 40 (19.1 bits), Expect = 7.4e-09, Sum P(3) = 7.4e-09
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 451 PSVDEEEADEKNGETYGLSSEFSVNKKRKKI 481
PS EEE +K G+ + + R++I
Sbjct: 411 PSSSEEEDSQKGGKVKKCKDDGDIECYRQRI 441
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 181 (68.8 bits), Expect = 2.3e-18, Sum P(4) = 2.3e-18
Identities = 53/178 (29%), Positives = 94/178 (52%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK---YDP 568
W ++LDEAQ IKN ++Q ++ + ++RR L+GTP+QNS+ +L+S FL +
Sbjct: 740 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 799
Query: 569 YAVYKSFYS---TIKIPISRNSLHGY-KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTI 624
+ +K ++S T I S+ G K+L VLR +LRR K +D + +P K
Sbjct: 800 HREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVK---VDVEK--QMPKKYE 854
Query: 625 SLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ + SK + Y + + K + A ++ +++ +L++LR+ C+HP L
Sbjct: 855 HVIRCRLSKRQRCLYDDFMAQTTTK-ETLATG-----HFMSVINILMQLRKVCNHPNL 906
Score = 99 (39.9 bits), Expect = 2.3e-18, Sum P(4) = 2.3e-18
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++F+Q TRMLD++E L H Y RLDG+ + R ++ FN D+ +
Sbjct: 2063 LIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRI 2111
Score = 89 (36.4 bits), Expect = 2.3e-18, Sum P(4) = 2.3e-18
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 261 KVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+V+ +P LL L ++Q I L W++ + L+ GILAD+ GLGKTI I+L+
Sbjct: 605 QVKTPIPL-LLRGQLREYQHIGLDWLVTMYEKKLN---GILADEMGLGKTIQTISLL 657
Score = 57 (25.1 bits), Expect = 2.3e-18, Sum P(4) = 2.3e-18
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELA-----KYDVVLTTYSI 442
L++ P SV+ W EL+ P + +L Y+G + + + V +T+Y +
Sbjct: 671 LIIVPTSVMLNWEMELKRWCP---SFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 727
Query: 443 VTNE 446
V +
Sbjct: 728 VLQD 731
Score = 43 (20.2 bits), Expect = 7.9e-13, Sum P(3) = 7.9e-13
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 450 QPSVDEEEADEKNGETYGLSSEFSVNKKRKKI 481
QP DEEE DE+ E +R++I
Sbjct: 290 QPQEDEEEDDEETIEVEEQQEGNDAEAQRREI 321
Score = 42 (19.8 bits), Expect = 1.0e-12, Sum P(3) = 1.0e-12
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 444 TNEVPKQPSVDEEEADEKNGETYGLSSE 471
+ + Q DEEE D+ G Y L+ +
Sbjct: 531 SEDAQSQSQADEEEEDDDFGVEYLLARD 558
Score = 41 (19.5 bits), Expect = 0.00034, Sum P(4) = 0.00034
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 631 FSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM 669
F ++ W + E+ ++K FK+ +N N LL+
Sbjct: 735 FRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLL 773
Score = 37 (18.1 bits), Expect = 3.9e-12, Sum P(4) = 3.9e-12
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 746 SEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSP 792
SE +T +P ++L V + +T + S G SP P
Sbjct: 2674 SEELTEAKTPTSSPEKPQELVTAEVAAPSTSSSATSSPEGPSPARPP 2720
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 181 (68.8 bits), Expect = 2.3e-18, Sum P(4) = 2.3e-18
Identities = 53/178 (29%), Positives = 94/178 (52%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK---YDP 568
W ++LDEAQ IKN ++Q ++ + ++RR L+GTP+QNS+ +L+S FL +
Sbjct: 747 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 806
Query: 569 YAVYKSFYS---TIKIPISRNSLHGY-KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTI 624
+ +K ++S T I S+ G K+L VLR +LRR K +D + +P K
Sbjct: 807 HREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVK---VDVEK--QMPKKYE 861
Query: 625 SLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ + SK + Y + + K + A ++ +++ +L++LR+ C+HP L
Sbjct: 862 HVIRCRLSKRQRCLYDDFMAQTTTK-ETLATG-----HFMSVINILMQLRKVCNHPNL 913
Score = 99 (39.9 bits), Expect = 2.3e-18, Sum P(4) = 2.3e-18
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++F+Q TRMLD++E L H Y RLDG+ + R ++ FN D+ +
Sbjct: 2063 LIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRI 2111
Score = 89 (36.4 bits), Expect = 2.3e-18, Sum P(4) = 2.3e-18
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 261 KVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+V+ +P LL L ++Q I L W++ + L+ GILAD+ GLGKTI I+L+
Sbjct: 612 QVKTPIPL-LLRGQLREYQHIGLDWLVTMYEKKLN---GILADEMGLGKTIQTISLL 664
Score = 57 (25.1 bits), Expect = 2.3e-18, Sum P(4) = 2.3e-18
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELA-----KYDVVLTTYSI 442
L++ P SV+ W EL+ P + +L Y+G + + + V +T+Y +
Sbjct: 678 LIIVPTSVMLNWEMELKRWCP---SFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 734
Query: 443 VTNE 446
V +
Sbjct: 735 VLQD 738
Score = 43 (20.2 bits), Expect = 7.9e-13, Sum P(3) = 7.9e-13
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 444 TNEVPKQPSVDEEEADEKNGETYGLSSE 471
+ E Q DEEE D+ G Y L+ +
Sbjct: 537 SEESQSQSQADEEEEDDDFGVEYLLARD 564
Score = 41 (19.5 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 17/67 (25%), Positives = 28/67 (41%)
Query: 402 ELEDKVPDKAALSVLIYHGGSRTKDPVELAKY-DVVLTTYSIVTNEVPKQPSVDEEEADE 460
+LE +V L+ L GG + + + L +Y + S + ++ DE EAD
Sbjct: 422 QLEGEVDPAVELNELAREGGELSVEEL-LQQYAGAYASDASAPGSGSSEEEEEDEVEADS 480
Query: 461 KNGETYG 467
E G
Sbjct: 481 SESEPEG 487
Score = 41 (19.5 bits), Expect = 0.00034, Sum P(4) = 0.00034
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 631 FSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM 669
F ++ W + E+ ++K FK+ +N N LL+
Sbjct: 742 FRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLL 780
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 181 (68.8 bits), Expect = 2.4e-18, Sum P(4) = 2.4e-18
Identities = 53/178 (29%), Positives = 94/178 (52%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK---YDP 568
W ++LDEAQ IKN ++Q ++ + ++RR L+GTP+QNS+ +L+S FL +
Sbjct: 748 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 807
Query: 569 YAVYKSFYS---TIKIPISRNSLHGY-KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTI 624
+ +K ++S T I S+ G K+L VLR +LRR K +D + +P K
Sbjct: 808 HREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVK---VDVEK--QMPKKYE 862
Query: 625 SLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ + SK + Y + + K + A ++ +++ +L++LR+ C+HP L
Sbjct: 863 HVIRCRLSKRQRCLYDDFMAQTTTK-ETLATG-----HFMSVINILMQLRKVCNHPNL 914
Score = 99 (39.9 bits), Expect = 2.4e-18, Sum P(4) = 2.4e-18
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++F+Q TRMLD++E L H Y RLDG+ + R ++ FN D+ +
Sbjct: 2074 LIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRI 2122
Score = 89 (36.4 bits), Expect = 2.4e-18, Sum P(4) = 2.4e-18
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 261 KVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+V+ +P LL L ++Q I L W++ + L+ GILAD+ GLGKTI I+L+
Sbjct: 613 QVKTPIPL-LLRGQLREYQHIGLDWLVTMYEKKLN---GILADEMGLGKTIQTISLL 665
Score = 57 (25.1 bits), Expect = 2.4e-18, Sum P(4) = 2.4e-18
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELA-----KYDVVLTTYSI 442
L++ P SV+ W EL+ P + +L Y+G + + + V +T+Y +
Sbjct: 679 LIIVPTSVMLNWEMELKRWCP---SFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 735
Query: 443 VTNE 446
V +
Sbjct: 736 VLQD 739
Score = 41 (19.5 bits), Expect = 0.00035, Sum P(4) = 0.00035
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 631 FSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM 669
F ++ W + E+ ++K FK+ +N N LL+
Sbjct: 743 FRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLL 781
Score = 39 (18.8 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 450 QPSVDEEEADEKNGETYGLSSEFSVNKKRKKI 481
QP +EEE DE+ E +R++I
Sbjct: 292 QPQEEEEEDDEETIEVEEQQEGNDAETQRREI 323
>POMBASE|SPAC144.05 [details] [associations]
symbol:SPAC144.05 "ATP-dependent DNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0008270 "zinc ion
binding" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=ISM] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 PomBase:SPAC144.05 Prosite:PS00518
GO:GO:0005524 EMBL:CU329670 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0000790 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 GO:GO:0004842 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008094 KO:K15710 OMA:HTWGVSG OrthoDB:EOG4Q2HPM PIR:T37672
RefSeq:NP_594666.1 ProteinModelPortal:Q9UTL9
EnsemblFungi:SPAC144.05.1 GeneID:2542902 KEGG:spo:SPAC144.05
NextBio:20803941 Uniprot:Q9UTL9
Length = 1375
Score = 190 (71.9 bits), Expect = 2.5e-18, Sum P(5) = 2.5e-18
Identities = 58/213 (27%), Positives = 105/213 (49%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
PL V W+R+ +DEAQ ++ ++ VA+ + W +SGTP+++ +DDL+ L+
Sbjct: 415 PLIDVCWWRICVDEAQMVETSQSNVAQMIYRIPRVNCWTVSGTPVRSEVDDLFGLLFLLR 474
Query: 566 YDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPK-TI 624
Y P +YK + ++I I + + + L +++ R +K D + + LPP+ I
Sbjct: 475 YSPMYLYKK-QAWMQI-IEKKRVREFCDL---FGSLVCRHSKQ---DVEEELKLPPQHRI 526
Query: 625 SLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK 684
+T S E Y+ L S++ K F D + ++ L+RLRQAC HP
Sbjct: 527 CMT-TRLSVVEETNYQDLLSEAAKSLHFFKDRNLDLCDEESMRRWLVRLRQACCHP---- 581
Query: 685 EYDFDSVGKISGEMAKRLPRDMLIDLLSRLETS 717
+ F + G K + D+L+ +L + ++
Sbjct: 582 QVGFGNKSAFGGGPMKSI-NDVLVFMLEQTNST 613
Score = 88 (36.0 bits), Expect = 1.0e-07, Sum P(5) = 1.0e-07
Identities = 34/158 (21%), Positives = 68/158 (43%)
Query: 619 LPPKTISLTKVDFSKEEWAFYKKLESDSLK-------KFKAFADAGTVNQNYANILLMLL 671
+PP +++ ++ K++ K L S +K + D + N A ++ +
Sbjct: 980 MPPPVSNISLNNYVKDDEKKQKFLNSVIIKASVILEKEISEKQDEASQTTNVAELVNQKI 1039
Query: 672 RLRQACDHPLLVKEYDFDSVG---KISG-EMAKRLPRDMLIDLLSRLETSSAICCVCSDP 727
H L++E + + KI+ E +R ++ ++ + E S IC +C D
Sbjct: 1040 SEMNIPGHIHLLRELEEEKSNTQRKIAHFESRRRYLTNLYEHIVLKAE-SHQICIICRDI 1098
Query: 728 PEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQL 765
+ +T CGH++C C ++ + CP CK +L
Sbjct: 1099 IKQGFITTCGHLYCSFCLEAWLKHSSS-CPM--CKTKL 1133
Score = 79 (32.9 bits), Expect = 2.5e-18, Sum P(5) = 2.5e-18
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKY----DVVLTTYS 441
TL++ P+++L QW E++ VP +L V Y G R + ++ AK D+V+T+YS
Sbjct: 333 TLIITPSTILDQWLSEIDLHVP---SLKVFHYQG-IRKSNGLKSAKIFLDCDIVVTSYS 387
Score = 70 (29.7 bits), Expect = 2.5e-18, Sum P(5) = 2.5e-18
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 298 GGILADDQGLGKTISIIALI 317
GGILAD+ G+GKT+ ++ L+
Sbjct: 285 GGILADEMGMGKTLEVLGLV 304
Score = 70 (29.7 bits), Expect = 2.5e-18, Sum P(5) = 2.5e-18
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
K +VFSQW +LD++ S + I + R DG +++ +K F +R +
Sbjct: 1206 KVVVFSQWLDVLDVLHKSFEANGIVFIRFDGK----SKNTCLKRFKEERSL 1252
Score = 42 (19.8 bits), Expect = 2.5e-18, Sum P(5) = 2.5e-18
Identities = 23/104 (22%), Positives = 40/104 (38%)
Query: 192 YVKKNDDDIMMYEGNRILPSSLMHGKSV----SMTQFGGPSDLAYRSGSADERA-VGGDE 246
YV ++++ G IL S L ++ S + + D + +E + + +
Sbjct: 130 YVTVKGSELILSFGISILDSFLAPQDAILSSGSSSSYTALLDYTFLPSEDEEYSCLDINT 189
Query: 247 RLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
L Y A + + D LS LL Q L WM ++E
Sbjct: 190 ALFYDCARKLAKSLRFANVSRDPRLSSELLPFQMRVLEWMKRRE 233
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 188 (71.2 bits), Expect = 2.7e-18, Sum P(4) = 2.7e-18
Identities = 51/181 (28%), Positives = 96/181 (53%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
PL K+ W +++DEA IKN + +++ ++ R ++GTP+QN++ +L++ FL
Sbjct: 312 PLKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNNLHELWALLNFLL 371
Query: 566 YDPYAVYKSF---YSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPK 622
D ++ + F +S+ ++ + K+L VL+ +LRR K D + + LP K
Sbjct: 372 PDIFSDAQDFDDWFSSESTEEDQDKI--VKQLHTVLQPFLLRRIKS---DVETSL-LPKK 425
Query: 623 TISLTKVDFSKEEWAFYKK-LESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPL 681
++L V S + +YKK LE D A + ++ +L ++++LR+ C+HP
Sbjct: 426 ELNLY-VGMSSMQKKWYKKILEKD----LDAVNGSNGSKESKTRLLNIMMQLRKCCNHPY 480
Query: 682 L 682
L
Sbjct: 481 L 481
Score = 79 (32.9 bits), Expect = 2.7e-18, Sum P(4) = 2.7e-18
Identities = 17/50 (34%), Positives = 32/50 (64%)
Query: 850 EGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
EG + ++FSQ +R+LD++E+ +Y R+DG+ + R +A+ D+N
Sbjct: 517 EGS-RVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRIQAIDDYN 565
Score = 72 (30.4 bits), Expect = 2.7e-18, Sum P(4) = 2.7e-18
Identities = 21/69 (30%), Positives = 31/69 (44%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK-----YDVVLTTYSI 442
LV+ P S L W RE+ PD ++ I G + + K +DVV+ +Y I
Sbjct: 249 LVIAPKSTLNNWLREINRWTPD---VNAFILQGDKEERAELIQKKLLGCDFDVVIASYEI 305
Query: 443 VTNEVPKQP 451
+ E K P
Sbjct: 306 IIRE--KSP 312
Score = 66 (28.3 bits), Expect = 2.7e-18, Sum P(4) = 2.7e-18
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 293 SLHC--LGGILADDQGLGKTISIIALIQMQRSLQ 324
SLH + GILAD+ GLGKT+ I+ + R ++
Sbjct: 209 SLHKNKIAGILADEMGLGKTLQTISFLGYLRYIE 242
Score = 38 (18.4 bits), Expect = 3.6e-14, Sum P(4) = 3.6e-14
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 760 RCKE-QLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKS 797
+C E + A +V T +D G FAD++
Sbjct: 1051 QCLEKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQT 1089
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 142 (55.0 bits), Expect = 3.0e-18, Sum P(4) = 3.0e-18
Identities = 46/178 (25%), Positives = 83/178 (46%)
Query: 516 VLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAV---- 571
V DE +KN + +L A+ R L+GTP+QN++ +L S F+ ++
Sbjct: 603 VFDEGHMLKNMSAIRYQHLMTLNARSRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 662
Query: 572 YKSFYSTIKIPISRNSLHGYKKL---QAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTK 628
K +S+ ++ +++ + +++ +LRR K + LPPK +
Sbjct: 663 IKRLFSSKAKSTDEQTIFEKERIAHAKQIMKPFILRRVKSEVLK-----QLPPKQDKIKF 717
Query: 629 VDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEY 686
SK++ ++L SD L K K DA N N+++ LR+ +HPLL ++Y
Sbjct: 718 CQMSKKQ----EQLYSDLLNKLKKSIDATEKNSELCNVMM---HLRKMANHPLLHRQY 768
Score = 106 (42.4 bits), Expect = 3.0e-18, Sum P(4) = 3.0e-18
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++FSQ+T MLD++E L H +Y RLDG + R + +FNTD ++
Sbjct: 851 VLFSQFTMMLDIIEVFLRHHQHRYVRLDGKTQISERIHLIDEFNTDMDI 899
Score = 80 (33.2 bits), Expect = 3.0e-18, Sum P(4) = 3.0e-18
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 270 LLSVNL-LK-HQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++S NL LK +QKI L W+ H + ILAD+ GLGKT+ IA +
Sbjct: 467 IMSENLVLKPYQKIGLNWLALLHK---HKVNMILADEMGLGKTVQAIAFL 513
Score = 77 (32.2 bits), Expect = 3.0e-18, Sum P(4) = 3.0e-18
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV------ELAKYDVVLTTYS 441
LVV PAS + W RE P ++++L+Y+G + + ++ +++V++TTY+
Sbjct: 526 LVVVPASTMDNWIREFNQWCP---SMNILLYYGSQEERKHLRYDILNKVVEFNVIVTTYN 582
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 180 (68.4 bits), Expect = 3.6e-18, Sum P(4) = 3.6e-18
Identities = 53/177 (29%), Positives = 92/177 (51%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +V+DEA IKN +++++ ++ R L+GTP+QN++ +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 569 YAVYKSFYSTIKIPISRNSLHGYK---KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+ F S ++N L K +L AVL+ +LRR K T ++ +LPPK
Sbjct: 365 FNSADDFDSWFD---TKNCLGDQKLVERLHAVLKPFLLRRIK-TDVEK----SLPPKKEI 416
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ SK + +Y K+ +K AG +++ +L +L++LR+ C+HP L
Sbjct: 417 KIYLGLSKMQREWYTKI---LMKDIDVLNSAGKMDK--MRLLNILMQLRKCCNHPYL 468
Score = 83 (34.3 bits), Expect = 3.6e-18, Sum P(4) = 3.6e-18
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++FSQ TR+LD++E+ +Y RLDG R+ A++ FN
Sbjct: 509 LIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFN 552
Score = 70 (29.7 bits), Expect = 3.6e-18, Sum P(4) = 3.6e-18
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ IAL+
Sbjct: 186 LRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 63 (27.2 bits), Expect = 3.6e-18, Sum P(4) = 3.6e-18
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRT---KDPVELAKYDVVLTTYSI 442
+V+ P S L W E + VP +L V+ + G +R +D + ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVP---SLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 443 VTNE 446
V E
Sbjct: 296 VIKE 299
>ZFIN|ZDB-GENE-050522-499 [details] [associations]
symbol:smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-499 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000729 HOGENOM:HOG000172362
GO:GO:0035861 GeneTree:ENSGT00630000089890 OMA:KEERYMA
HOVERGEN:HBG055804 EMBL:AL807792 IPI:IPI00492619 UniGene:Dr.3950
ProteinModelPortal:B0R061 Ensembl:ENSDART00000091409
ArrayExpress:B0R061 Bgee:B0R061 Uniprot:B0R061
Length = 972
Score = 133 (51.9 bits), Expect = 5.5e-18, Sum P(5) = 5.5e-18
Identities = 50/192 (26%), Positives = 87/192 (45%)
Query: 516 VLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKS- 574
V DE +KN + R ++ A+ R L+GTP+QN++ +L S F+ ++ S
Sbjct: 577 VFDEGHMLKNMNSLRYRHLMTINAEHRLLLTGTPLQNNLLELMSLLNFIMPSMFSSSTSQ 636
Query: 575 ---FYSTIKIPISRNSLHGYKKLQA--VLRAIMLRRTKGTFIDGQPIINLPPKTISLTKV 629
+ST + +S H + QA +++ +LRR K + LPPK +
Sbjct: 637 ISKMFST-RSSEEESSFHKDRIAQARLIMKPFILRRVKSEVLK-----ELPPKMEKIEMC 690
Query: 630 DFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEY-DF 688
S + Y L K+ K T N + + ++++LR+ +HPLL ++Y
Sbjct: 691 PMSDAQHKLYDIL----FKRLKK-----TPNGDKRELCNVMMQLRKMANHPLLHRQYYTS 741
Query: 689 DSVGKISGEMAK 700
D + +S M K
Sbjct: 742 DKLAAMSKAMLK 753
Score = 103 (41.3 bits), Expect = 5.5e-18, Sum P(5) = 5.5e-18
Identities = 36/109 (33%), Positives = 50/109 (45%)
Query: 209 LPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPD 268
L L+HG V + + DL R ++ D + +A + + QPKV L
Sbjct: 389 LSIDLVHGCKVVLKERQVVLDLMGRCEKIAQKMTK-DVTQVIEAGMGSIKQPKV---LNS 444
Query: 269 GLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L L +Q I L W++ H L GILAD+ GLGKTI IA +
Sbjct: 445 NL---KLQAYQLIGLKWLILLHQ---HKLSGILADEMGLGKTIQAIAFL 487
Score = 93 (37.8 bits), Expect = 5.5e-18, Sum P(5) = 5.5e-18
Identities = 32/109 (29%), Positives = 52/109 (47%)
Query: 801 DNEYISSKIRTVLDI-LHTQCELNTKCSIVEIHD-LAGSNGSSAVHSKSPIEGPIKS--- 855
D I + + D LH C + S ++ L +G A+ +K+ + K
Sbjct: 761 DPALIQEDMEVMSDFELHNLCREYSSISGFQLEKALILDSGKFALLTKTLAKLKEKGDRV 820
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++FSQ+T MLD+VE L QY RLDG+ + R + +NT+ E+
Sbjct: 821 VLFSQFTMMLDIVEILLKHLDHQYVRLDGSTPMAERIGLIDKYNTNPEI 869
Score = 67 (28.6 bits), Expect = 5.5e-18, Sum P(5) = 5.5e-18
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE------LAKYDVVLTTYS 441
L+ P+S L W REL P +L VLIY+G + + L ++++++TY+
Sbjct: 500 LITVPSSTLDNWVRELGLWCP---SLKVLIYYGSVEDRKYLRQDILTGLIDFNIIVSTYN 556
Query: 442 I 442
+
Sbjct: 557 L 557
Score = 47 (21.6 bits), Expect = 5.5e-18, Sum P(5) = 5.5e-18
Identities = 17/71 (23%), Positives = 31/71 (43%)
Query: 88 SDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIAN---VASADYEKISSQQALKRTLPAF 144
S ++Q S ++ SH + Q + + ++ AS+ ++SS ALK A
Sbjct: 223 SPENQKSKQKSKSSHSKEKTDKITQRPSGSSSLSRWLTAASSHVPEVSSMSALKTQKSAL 282
Query: 145 PQPHSLNTKSK 155
+ S N+ K
Sbjct: 283 SKSTSKNSSFK 293
Score = 38 (18.4 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 452 SVDEEEADEKNGETYGLSSEFSVNKKRKKI 481
S DE+ DE++ E E + K ++K+
Sbjct: 158 SEDEDSEDEESEEPSREKQEALLKKLKRKL 187
>UNIPROTKB|F1NLW6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02019534 EMBL:AADN02019532
EMBL:AADN02019533 IPI:IPI00572954 Ensembl:ENSGALT00000002030
ArrayExpress:F1NLW6 Uniprot:F1NLW6
Length = 2005
Score = 212 (79.7 bits), Expect = 7.0e-18, Sum P(4) = 7.0e-18
Identities = 52/180 (28%), Positives = 94/180 (52%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L K+ W VV+DEA +KN ++ + + + L+GTP+QNS+++L+S F
Sbjct: 381 CPELKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNF 440
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + +F + + KKLQ++L+ +MLRR K D + NL PK
Sbjct: 441 LEPQQFPSETAFLEEFGDLKTEEQV---KKLQSILKPMMLRRLKD---DVEK--NLAPKQ 492
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K +F G N N++ ++ LR+ C+HP L+
Sbjct: 493 ETIIEVELTNIQKKYYRAI----LEKNFSFLSKGANQHNMPNLINTMMELRKCCNHPYLI 548
Score = 81 (33.6 bits), Expect = 7.0e-18, Sum P(4) = 7.0e-18
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 849 IEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF---NTDREV 904
I G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F ++DR V
Sbjct: 593 IAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFV 651
Score = 63 (27.2 bits), Expect = 7.0e-18, Sum P(4) = 7.0e-18
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S L ++Q + W+L +C ILAD+ GLGKTI I +
Sbjct: 255 SNQLREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 297
Score = 55 (24.4 bits), Expect = 7.0e-18, Sum P(4) = 7.0e-18
Identities = 15/78 (19%), Positives = 34/78 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
L++ P S + W RE ++ ++YHG ++ ++ +
Sbjct: 310 LIIAPLSTITNWEREFRTWTE----MNAIVYHGSQISRQMIQQYEMVYRDTQGNPLPGIF 365
Query: 432 KYDVVLTTYSIVTNEVPK 449
K+ VV+TT+ ++ + P+
Sbjct: 366 KFQVVITTFEMILADCPE 383
>UNIPROTKB|F1NLV5 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OMA:CKWATME GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00588365
Ensembl:ENSGALT00000002034 ArrayExpress:F1NLV5 Uniprot:F1NLV5
Length = 2007
Score = 212 (79.7 bits), Expect = 7.0e-18, Sum P(4) = 7.0e-18
Identities = 52/180 (28%), Positives = 94/180 (52%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L K+ W VV+DEA +KN ++ + + + L+GTP+QNS+++L+S F
Sbjct: 381 CPELKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNF 440
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + +F + + KKLQ++L+ +MLRR K D + NL PK
Sbjct: 441 LEPQQFPSETAFLEEFGDLKTEEQV---KKLQSILKPMMLRRLKD---DVEK--NLAPKQ 492
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K +F G N N++ ++ LR+ C+HP L+
Sbjct: 493 ETIIEVELTNIQKKYYRAI----LEKNFSFLSKGANQHNMPNLINTMMELRKCCNHPYLI 548
Score = 81 (33.6 bits), Expect = 7.0e-18, Sum P(4) = 7.0e-18
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 849 IEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF---NTDREV 904
I G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F ++DR V
Sbjct: 593 IAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFV 651
Score = 63 (27.2 bits), Expect = 7.0e-18, Sum P(4) = 7.0e-18
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S L ++Q + W+L +C ILAD+ GLGKTI I +
Sbjct: 255 SNQLREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 297
Score = 55 (24.4 bits), Expect = 7.0e-18, Sum P(4) = 7.0e-18
Identities = 15/78 (19%), Positives = 34/78 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
L++ P S + W RE ++ ++YHG ++ ++ +
Sbjct: 310 LIIAPLSTITNWEREFRTWTE----MNAIVYHGSQISRQMIQQYEMVYRDTQGNPLPGIF 365
Query: 432 KYDVVLTTYSIVTNEVPK 449
K+ VV+TT+ ++ + P+
Sbjct: 366 KFQVVITTFEMILADCPE 383
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 202 (76.2 bits), Expect = 7.7e-18, Sum P(4) = 7.7e-18
Identities = 52/180 (28%), Positives = 93/180 (51%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L + W VV+DEA +KN ++ + + + L+GTP+QN++++L+S F
Sbjct: 277 CPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHF 336
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + +F + + +KLQA+L+ +MLRR K D + NL PK
Sbjct: 337 LEPGRFPSETTFMQEFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--NLAPKE 388
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K AF G N N+L ++ LR+ C+HP L+
Sbjct: 389 ETIIEVELTNIQKKYYRAI----LEKNFAFLSKGGGQANVPNLLNTMMELRKCCNHPYLI 444
Score = 75 (31.5 bits), Expect = 7.7e-18, Sum P(4) = 7.7e-18
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G + ++FSQ R LD++E+ L Q Y R+DG + R A+ F+
Sbjct: 491 GGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFS 539
Score = 63 (27.2 bits), Expect = 7.7e-18, Sum P(4) = 7.7e-18
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L ++Q + W+L + +C ILAD+ GLGKTI I +
Sbjct: 154 LREYQLEGVNWLLFNWYNTRNC---ILADEMGLGKTIQSITFL 193
Score = 63 (27.2 bits), Expect = 7.7e-18, Sum P(4) = 7.7e-18
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430
LV+ P S + W RE L+V++YHG ++ ++L
Sbjct: 206 LVIAPLSTIPNWEREFRTWTE----LNVVVYHGSQASRRTIQL 244
Score = 42 (19.8 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 782 DDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTK 825
+D PT +PF D+ + + + + + +L L E N++
Sbjct: 1042 EDPEYKPTRTPFKDEIDVRTSSFSNYNAQILLHSLDKHSESNSE 1085
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 153 (58.9 bits), Expect = 1.4e-17, Sum P(4) = 1.4e-17
Identities = 52/196 (26%), Positives = 99/196 (50%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSL-RAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
LAK + +++DE +KN ++++++ + + K R L+GTP+QN++ +L++ F+
Sbjct: 616 LAKFHYSHMIIDEGHRMKNAQSKLSQTLRTYYKTKNRLILTGTPLQNNLPELWALLNFVL 675
Query: 566 YDPYAVYKSF---YSTI--------KIPISRN-SLHGYKKLQAVLRAIMLRRTKGTFIDG 613
+ KSF ++T KI ++ SL ++L VLR +LRR K D
Sbjct: 676 PGIFNSVKSFDDWFNTPFANTGAQEKIELTEEESLLVIRRLHKVLRPFLLRRLKK---DV 732
Query: 614 QPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAF--ADAGTVNQNYANILLMLL 671
+ +LP K + K + S ++ Y+++ LK F AD G + ++
Sbjct: 733 EK--DLPDKVEKVLKCNLSGLQYVLYQQM----LKHNALFVGADVGGAKSGIKGLNNKIM 786
Query: 672 RLRQACDHPLLVKEYD 687
+LR+ C+HP + +E +
Sbjct: 787 QLRKICNHPFVFEEVE 802
Score = 93 (37.8 bits), Expect = 1.4e-17, Sum P(4) = 1.4e-17
Identities = 32/102 (31%), Positives = 49/102 (48%)
Query: 216 GKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNL 275
G S+ + G P ++A + S D+ + E+ Y + + E P L+ L
Sbjct: 447 GGSMGTPRHGSP-EVAVENKSDDKAELR--EKTDYYEVAHRIKEKITEQ--PTILVGGKL 501
Query: 276 LKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++Q L WM+ H L GILAD+ GLGKTI I+L+
Sbjct: 502 KEYQMKGLEWMVSLYNN--H-LNGILADEMGLGKTIQSISLV 540
Score = 84 (34.6 bits), Expect = 1.4e-17, Sum P(4) = 1.4e-17
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS---RTKDP-VELAKYDVVLTTYSIV 443
L++ P S + W E E P ++ V++Y G R+ P + + V+LTTY V
Sbjct: 553 LIIVPLSTITNWTLEFEKWAP---SIKVIVYKGSQQQRRSLQPDIRYGNFQVLLTTYEYV 609
Query: 444 TNEVP 448
E P
Sbjct: 610 IRERP 614
Score = 73 (30.8 bits), Expect = 1.4e-17, Sum P(4) = 1.4e-17
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++F Q T+++D++E+ L ++Y RLDG+ R +K FN
Sbjct: 840 LMFFQMTQIMDIMEDFLRWKDMKYLRLDGSTKAEERQDMLKVFN 883
Score = 51 (23.0 bits), Expect = 0.00031, Sum P(3) = 0.00031
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 563 FLKYDPYAVYKSFYSTIKIPISRNSL 588
F+K +Y +YS IK P+S N +
Sbjct: 1223 FIKLPSRKLYPDYYSIIKKPVSINQV 1248
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 185 (70.2 bits), Expect = 1.4e-17, Sum P(4) = 1.4e-17
Identities = 49/176 (27%), Positives = 87/176 (49%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W +++DEA IKN + +++ R ++GTP+QN++ +L++ FL
Sbjct: 311 LRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLP 370
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ ++ ++F +I + ++L VLR +LRR K G LPPK ++
Sbjct: 371 EVFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKG-----LPPKKETI 425
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
KV S+ + +YK L L+K + G + NI + +LR+ C+HP L
Sbjct: 426 LKVGMSQMQKQYYKAL----LQKDLEVVNGGGERKRLLNIAM---QLRKCCNHPYL 474
Score = 88 (36.0 bits), Expect = 1.4e-17, Sum P(4) = 1.4e-17
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++FSQ TR+LD++E+ L QY R+DG RD +++ +N
Sbjct: 515 LIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYN 558
Score = 72 (30.4 bits), Expect = 1.4e-17, Sum P(4) = 1.4e-17
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W+++ ++ GILAD+ GLGKT+ I+L+
Sbjct: 194 LRDYQLAGLNWLIRLYENGIN---GILADEMGLGKTLQTISLL 233
Score = 52 (23.4 bits), Expect = 1.4e-17, Sum P(4) = 1.4e-17
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSR-TKDPVELA-KYDVVLTTYSIVTN 445
+VV P S L W E+ P A+ L R ++ + +A K+D+ +T++ +
Sbjct: 247 MVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAGKFDICVTSFEMAIK 306
Query: 446 E 446
E
Sbjct: 307 E 307
Score = 40 (19.1 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 447 VPKQPSVDEEEADEKNGE 464
VP + +E+E DE+ E
Sbjct: 63 VPVEDDAEEDEEDEEKAE 80
>SGD|S000003796 [details] [associations]
symbol:RAD26 "Protein involved in transcription-coupled
nucleotide excision repair" species:4932 "Saccharomyces cerevisiae"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair"
evidence=IGI;IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000003796 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 EMBL:BK006943 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006283 GO:GO:0008094
GeneTree:ENSGT00590000083118 HOGENOM:HOG000170952 KO:K10841
EMBL:X81635 EMBL:L26910 EMBL:Z49535 PIR:JC2227 RefSeq:NP_012569.1
ProteinModelPortal:P40352 SMR:P40352 DIP:DIP-3008N IntAct:P40352
MINT:MINT-439055 STRING:P40352 PaxDb:P40352 PeptideAtlas:P40352
EnsemblFungi:YJR035W GeneID:853492 KEGG:sce:YJR035W CYGD:YJR035w
OMA:DENRIME OrthoDB:EOG44TSGZ NextBio:974125 Genevestigator:P40352
GermOnline:YJR035W Uniprot:P40352
Length = 1085
Score = 190 (71.9 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 72/304 (23%), Positives = 127/304 (41%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEV 447
L+VCPA+V++QW E + P + + G + ++ + D+ +++ N
Sbjct: 350 LIVCPATVMKQWCNEFQHWWPPLRTVILHSMGSGMASDQKFKMDENDLE----NLIMNSK 405
Query: 448 PKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKIXXXXXXXXXXXXXXXXXXIDYGCGPL 507
P S ++ + + + L S + ++K K+ L
Sbjct: 406 PSDFSYEDWKNSTRTKKA--LESSYHLDKLIDKVVTDGHILITTYVGLRIHS-----DKL 458
Query: 508 AKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYD 567
KV W VLDE I+N ++++ C L+ R LSGTPIQN++ +L+S F F+
Sbjct: 459 LKVKWQYAVLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNNLTELWSLFDFIFPG 518
Query: 568 PYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLT 627
F IPI+ + GY A I ++ + + +I+ P +
Sbjct: 519 KLGTLPVFQQQFVIPIN---IGGY----ANATNIQVQTGYKCAVALRDLIS--PYLLRRV 569
Query: 628 KVDFSKE-----EWAFYKKLESDSLKKFKAFADAGTVNQ---NYANILLMLLRLRQACDH 679
K D +K+ E + KL K+ F + +NQ N+L + LR+ C+H
Sbjct: 570 KADVAKDLPQKKEMVLFCKLTKYQRSKYLEFLHSSDLNQIQNGKRNVLFGIDILRKICNH 629
Query: 680 PLLV 683
P L+
Sbjct: 630 PDLL 633
Score = 91 (37.1 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 266 LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+P + S+ L +QK + W+ E +C GGI+ D+ GLGKTI +IA I
Sbjct: 289 IPGEIYSL-LFNYQKTCVQWLY--ELYQQNC-GGIIGDEMGLGKTIQVIAFI 336
Score = 72 (30.4 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 854 KSIVFSQWTRMLDLVENSLN------QHCIQYRRLDGTMSLPARDRAVKDFNTD 901
K+++F+Q +MLD++E ++ H + Y R+DGT ++ R V FN +
Sbjct: 669 KALLFTQSRQMLDILEEFISTKDPDLSH-LNYLRMDGTTNIKGRQSLVDRFNNE 721
>UNIPROTKB|F1N734 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:DAAA02036652 EMBL:DAAA02036653 EMBL:DAAA02036654
EMBL:DAAA02036655 IPI:IPI00924240 Ensembl:ENSBTAT00000061177
ArrayExpress:F1N734 Uniprot:F1N734
Length = 2720
Score = 212 (79.7 bits), Expect = 1.7e-17, Sum P(4) = 1.7e-17
Identities = 51/180 (28%), Positives = 94/180 (52%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L K+ W V++DEA +KN ++ + + + L+GTP+QNS+++L+S F
Sbjct: 583 CPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNF 642
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + +F + + KKLQ++L+ +MLRR K D + NL PK
Sbjct: 643 LEPSQFPSETAFLEEFGDLKTEEQV---KKLQSILKPMMLRRLKD---DVEK--NLAPKQ 694
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K +F G N N++ ++ LR+ C+HP L+
Sbjct: 695 ETIIEVELTNIQKKYYRAI----LEKNFSFLSKGANQHNMPNLINTMMELRKCCNHPYLI 750
Score = 81 (33.6 bits), Expect = 1.7e-17, Sum P(4) = 1.7e-17
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 849 IEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF---NTDREV 904
I G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F ++DR V
Sbjct: 795 IAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFV 853
Score = 63 (27.2 bits), Expect = 1.7e-17, Sum P(4) = 1.7e-17
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S L ++Q + W+L +C ILAD+ GLGKTI I +
Sbjct: 457 SNQLREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 499
Score = 57 (25.1 bits), Expect = 1.7e-17, Sum P(4) = 1.7e-17
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVV 436
L++ P S + W RE ++ ++YHG ++ ++ +Y++V
Sbjct: 512 LIIAPLSTITNWEREFRTWTE----MNAIVYHGSQISRQMIQ--QYEMV 554
Score = 40 (19.1 bits), Expect = 2.2e-13, Sum P(4) = 2.2e-13
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 883 DGTMSLPARDRAVKDFNTDREVCSL 907
DG +P R K+ NT+ +V L
Sbjct: 1327 DGASDVPERGHTDKEDNTEDKVDGL 1351
>ASPGD|ASPL0000061821 [details] [associations]
symbol:AN10043 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001308 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EnsemblFungi:CADANIAT00002546 HOGENOM:HOG000175622 OMA:MEIEESV
Uniprot:C8VUX5
Length = 648
Score = 164 (62.8 bits), Expect = 1.8e-17, Sum P(4) = 1.8e-17
Identities = 43/136 (31%), Positives = 70/136 (51%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W VVLDE IKN R++ + LR++ R L+GTPIQN + +L+S +L D
Sbjct: 111 KTLWAHVVLDEGHRIKNSRSKRTQGVYRLRSENRIVLTGTPIQNDLTELWSILHWLYPDV 170
Query: 569 Y--AVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ A K F + + + + L+ +MLRRTK D Q ++LPPK ++
Sbjct: 171 FVPATAKLFENAFSLTDGKFDSIFLSHITRFLKVVMLRRTK---CDSQIGLDLPPKKETV 227
Query: 627 TKVDFSKEEWAFYKKL 642
V ++ + +Y+ +
Sbjct: 228 FSVPLTELQLGWYRTI 243
Score = 79 (32.9 bits), Expect = 1.8e-17, Sum P(4) = 1.8e-17
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELA-------KYDVVLTTY 440
LVVCP SVL W E+ L + YHGGS ++ + +++V+TTY
Sbjct: 43 LVVCPLSVLNTWMSEISRWT---TGLRPMAYHGGSEERENLRTCFRQQGAEPWNIVVTTY 99
Query: 441 SIVTNEV 447
+ +++
Sbjct: 100 ETLCSDL 106
Score = 77 (32.2 bits), Expect = 1.8e-17, Sum P(4) = 1.8e-17
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 297 LGGILADDQGLGKTISIIALIQ 318
+GGILADD GLGKT+ ++L Q
Sbjct: 9 IGGILADDMGLGKTLQALSLFQ 30
Score = 66 (28.3 bits), Expect = 1.8e-17, Sum P(4) = 1.8e-17
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 854 KSIVFSQWTRMLDLVENSLN----QHCIQYRRLDGTMSLPARDRAVKDFNTD 901
K I+FS + + LDL E+ L Q +Y RLDG+ S R+ +V F D
Sbjct: 350 KVIIFSGFDQTLDLCEDLLEMEKAQFSFKYGRLDGSTSSAWRNLSVFLFQND 401
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 206 (77.6 bits), Expect = 1.8e-17, Sum P(4) = 1.8e-17
Identities = 51/182 (28%), Positives = 95/182 (52%)
Query: 503 GCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFR 562
GCG L + W V++DEA +KN ++ + + + L+GTP+QN++++L+S
Sbjct: 508 GCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLH 567
Query: 563 FLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPK 622
FL+ + +F + + +KLQA+L+ +MLRR K D + L PK
Sbjct: 568 FLEPLRFPSESTFMQEFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--KLAPK 619
Query: 623 TISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
++ +V+ + + +Y+ + L+K +F G N N++ ++ LR+ C+HP L
Sbjct: 620 EETIIEVELTNIQKKYYRAI----LEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYL 675
Query: 683 VK 684
+K
Sbjct: 676 IK 677
Score = 71 (30.1 bits), Expect = 1.8e-17, Sum P(4) = 1.8e-17
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G K ++FSQ R LD++E+ L Y R+DG + R A+ F+
Sbjct: 723 GGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFS 771
Score = 64 (27.6 bits), Expect = 1.8e-17, Sum P(4) = 1.8e-17
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L ++Q L W+L +C ILAD+ GLGKTI I +
Sbjct: 386 LREYQLEGLNWLLFNWYNRRNC---ILADEMGLGKTIQSITFL 425
Score = 54 (24.1 bits), Expect = 1.8e-17, Sum P(4) = 1.8e-17
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE 429
L++ P S + W RE ++V++YHG ++ ++
Sbjct: 438 LIIAPLSTIANWEREFRTWTD----INVVVYHGSLISRQMIQ 475
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 180 (68.4 bits), Expect = 1.8e-17, Sum P(4) = 1.8e-17
Identities = 53/177 (29%), Positives = 92/177 (51%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +V+DEA IKN +++++ ++ R L+GTP+QN++ +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 569 YAVYKSFYSTIKIPISRNSLHGYK---KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+ F S ++N L K +L AVL+ +LRR K T ++ +LPPK
Sbjct: 365 FNSADDFDSWFD---TKNCLGDQKLVERLHAVLKPFLLRRIK-TDVEK----SLPPKKEI 416
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ SK + +Y K+ +K AG +++ +L +L++LR+ C+HP L
Sbjct: 417 KIYLGLSKMQREWYTKI---LMKDIDVLNSAGKMDK--MRLLNILMQLRKCCNHPYL 468
Score = 83 (34.3 bits), Expect = 1.8e-17, Sum P(4) = 1.8e-17
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++FSQ TR+LD++E+ +Y RLDG R+ A++ FN
Sbjct: 509 LIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFN 552
Score = 70 (29.7 bits), Expect = 1.8e-17, Sum P(4) = 1.8e-17
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ IAL+
Sbjct: 186 LRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 63 (27.2 bits), Expect = 1.8e-17, Sum P(4) = 1.8e-17
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRT---KDPVELAKYDVVLTTYSI 442
+V+ P S L W E + VP +L V+ + G +R +D + ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVP---SLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 443 VTNE 446
V E
Sbjct: 296 VIKE 299
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 148 (57.2 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 48/180 (26%), Positives = 81/180 (45%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
+++ W V+LDE I+N V AC R R LSG+P+QN++ +L+S F F+
Sbjct: 631 ISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFP 690
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQ---AVLRAIMLRRTKGTFIDGQPIINLPPKT 623
F +PI+ +Q A A +LR T ++ + ++
Sbjct: 691 GKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVK--- 747
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQ---NYANILLMLLRLRQACDHP 680
+SL+ D K E + +L + K ++ F D+ V + I L+ LR+ C+HP
Sbjct: 748 MSLSLPD--KNEQVLFCRLTEEQHKVYQNFIDSKEVYRILNGDMQIFSGLVALRKICNHP 805
Score = 105 (42.0 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 39/132 (29%), Positives = 60/132 (45%)
Query: 193 VKKNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDL-AYRSGSADERAVGGDERLIYQ 251
V++N+DD G + G+ V + G D R ++ + E+ +
Sbjct: 420 VQENEDDFSPSSGEEAEAACGGRGRKVVRCRDDGDEDYYKQRLRKWNKLRLQDKEKCL-- 477
Query: 252 AALEDLNQPKVEATLPD----GLLSVNLLKHQKIALAWMLQKETRSLHC--LGGILADDQ 305
LED + + +A D G L L K+Q+ + W+ + LHC GGIL D+
Sbjct: 478 -KLED-DSEESDAEFDDFKMPGFLFRKLFKYQQTGVRWLWE-----LHCQQAGGILGDEM 530
Query: 306 GLGKTISIIALI 317
GLGKTI IIA +
Sbjct: 531 GLGKTIQIIAFL 542
Score = 78 (32.5 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++FSQ +MLD++E L Y ++DGT ++ +R + +N D +
Sbjct: 854 LLFSQSRQMLDILEVFLRAQKYSYLKMDGTTAIASRQPLITRYNEDTSI 902
Score = 73 (30.8 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK-----YDVVLTTYS 441
T++VCP +V+ QW +E P +++ GS T+ +L + + +++T+YS
Sbjct: 565 TIIVCPTTVMHQWVKEFHTWWPPFRV--AILHETGSYTQKKEKLIRDIAHCHGILITSYS 622
Query: 442 IV 443
+
Sbjct: 623 YI 624
>UNIPROTKB|F1PTH3 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 Ensembl:ENSCAFT00000014716
Uniprot:F1PTH3
Length = 2715
Score = 211 (79.3 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 51/180 (28%), Positives = 94/180 (52%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L K+ W V++DEA +KN ++ + + + L+GTP+QNS+++L+S F
Sbjct: 584 CPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNF 643
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + +F + + KKLQ++L+ +MLRR K D + NL PK
Sbjct: 644 LEPSQFPSETAFLEEFGDLKTEEQV---KKLQSILKPMMLRRLKD---DVEK--NLAPKQ 695
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K +F G N N++ ++ LR+ C+HP L+
Sbjct: 696 ETIIEVELTNIQKKYYRAI----LEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLI 751
Score = 81 (33.6 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 849 IEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF---NTDREV 904
I G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F ++DR V
Sbjct: 796 IAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFV 854
Score = 63 (27.2 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S L ++Q + W+L +C ILAD+ GLGKTI I +
Sbjct: 458 SNQLREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 500
Score = 57 (25.1 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVV 436
L++ P S + W RE ++ ++YHG ++ ++ +Y++V
Sbjct: 513 LIIAPLSTITNWEREFRTWTE----MNAIVYHGSQISRQMIQ--QYEMV 555
Score = 48 (22.0 bits), Expect = 4.3e-14, Sum P(4) = 4.3e-14
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 813 LDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPI 849
+D++ + E + I+E+H+ G SA H + P+
Sbjct: 2298 MDLIFLK-EQTLQAGILEVHEDPGQAPPSASHPEGPV 2333
Score = 42 (19.8 bits), Expect = 1.7e-13, Sum P(4) = 1.7e-13
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 883 DGTMSLPARDRAVKDFNTDREVCSL 907
DGT +P R K+ NT+ ++ L
Sbjct: 1328 DGTSDIPERGNMDKEDNTEDKLDGL 1352
>UNIPROTKB|J9P0F6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 CTD:84181 KO:K14436 GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 RefSeq:XP_534421.3
Ensembl:ENSCAFT00000048852 GeneID:477230 KEGG:cfa:477230
Uniprot:J9P0F6
Length = 2715
Score = 211 (79.3 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 51/180 (28%), Positives = 94/180 (52%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L K+ W V++DEA +KN ++ + + + L+GTP+QNS+++L+S F
Sbjct: 584 CPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNF 643
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + +F + + KKLQ++L+ +MLRR K D + NL PK
Sbjct: 644 LEPSQFPSETAFLEEFGDLKTEEQV---KKLQSILKPMMLRRLKD---DVEK--NLAPKQ 695
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K +F G N N++ ++ LR+ C+HP L+
Sbjct: 696 ETIIEVELTNIQKKYYRAI----LEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLI 751
Score = 81 (33.6 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 849 IEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF---NTDREV 904
I G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F ++DR V
Sbjct: 796 IAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFV 854
Score = 63 (27.2 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S L ++Q + W+L +C ILAD+ GLGKTI I +
Sbjct: 458 SNQLREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 500
Score = 57 (25.1 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVV 436
L++ P S + W RE ++ ++YHG ++ ++ +Y++V
Sbjct: 513 LIIAPLSTITNWEREFRTWTE----MNAIVYHGSQISRQMIQ--QYEMV 555
Score = 48 (22.0 bits), Expect = 4.3e-14, Sum P(4) = 4.3e-14
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 813 LDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPI 849
+D++ + E + I+E+H+ G SA H + P+
Sbjct: 2298 MDLIFLK-EQTLQAGILEVHEDPGQAPPSASHPEGPV 2333
Score = 42 (19.8 bits), Expect = 1.7e-13, Sum P(4) = 1.7e-13
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 883 DGTMSLPARDRAVKDFNTDREVCSL 907
DGT +P R K+ NT+ ++ L
Sbjct: 1328 DGTSDIPERGNMDKEDNTEDKLDGL 1352
>UNIPROTKB|Q8TD26 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0003682
"chromatin binding" evidence=NAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0007399 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 CleanEx:HS_CHD5 EMBL:AY034072
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 EMBL:BC021907
EMBL:BC039860 EMBL:BC040016 EMBL:AF525085 EMBL:AB037756
EMBL:AK026022 IPI:IPI00220289 IPI:IPI00395823 IPI:IPI00513717
RefSeq:NP_115597.3 UniGene:Hs.740645 UniGene:Hs.741381 PDB:2EPB
PDBsum:2EPB ProteinModelPortal:Q8TD26 SMR:Q8TD26 IntAct:Q8TD26
MINT:MINT-1197235 STRING:Q8TD26 PhosphoSite:Q8TD26 DMDM:296439466
PaxDb:Q8TD26 PRIDE:Q8TD26 Ensembl:ENST00000373222
Ensembl:ENST00000373233 Ensembl:ENST00000440647 GeneID:84181
KEGG:hsa:84181 UCSC:uc002xka.1 UCSC:uc002xkc.3 CTD:84181
GeneCards:GC20M040030 H-InvDB:HIX0015824 H-InvDB:HIX0027712
HGNC:HGNC:19057 neXtProt:NX_Q8TD26 PharmGKB:PA134974700
HOVERGEN:HBG081150 InParanoid:Q8TD26 KO:K14436 OMA:CKWATME
OrthoDB:EOG4NP72J PhylomeDB:Q8TD26 ChiTaRS:CHD6
EvolutionaryTrace:Q8TD26 GenomeRNAi:84181 NextBio:73559
ArrayExpress:Q8TD26 Bgee:Q8TD26 CleanEx:HS_CHD6
Genevestigator:Q8TD26 GermOnline:ENSG00000124177 Uniprot:Q8TD26
Length = 2715
Score = 211 (79.3 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 51/180 (28%), Positives = 94/180 (52%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L K+ W V++DEA +KN ++ + + + L+GTP+QNS+++L+S F
Sbjct: 584 CPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNF 643
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + +F + + KKLQ++L+ +MLRR K D + NL PK
Sbjct: 644 LEPSQFPSETAFLEEFGDLKTEEQV---KKLQSILKPMMLRRLKD---DVEK--NLAPKQ 695
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K +F G N N++ ++ LR+ C+HP L+
Sbjct: 696 ETIIEVELTNIQKKYYRAI----LEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLI 751
Score = 81 (33.6 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 849 IEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF---NTDREV 904
I G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F ++DR V
Sbjct: 796 IAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFV 854
Score = 63 (27.2 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S L ++Q + W+L +C ILAD+ GLGKTI I +
Sbjct: 458 SNQLREYQLEGMNWLLFNWYNRKNC---ILADEMGLGKTIQSITFL 500
Score = 57 (25.1 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVV 436
L++ P S + W RE ++ ++YHG ++ ++ +Y++V
Sbjct: 513 LIIAPLSTITNWEREFRTWTE----MNAIVYHGSQISRQMIQ--QYEMV 555
Score = 46 (21.3 bits), Expect = 6.8e-14, Sum P(4) = 6.8e-14
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 813 LDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKS 855
+D++ + E + I+E+H+ G S H + P GP S
Sbjct: 2298 MDLIFLK-EQTLQAGILEVHEDPGQATLSTTHPEGP--GPATS 2337
Score = 41 (19.5 bits), Expect = 2.2e-13, Sum P(4) = 2.2e-13
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 883 DGTMSLPARDRAVKDFNTDREVCSL 907
DGT +P R K+ N + +V L
Sbjct: 1328 DGTSDIPERGNTDKEDNAEDKVDGL 1352
>TAIR|locus:2054955 [details] [associations]
symbol:ASG3 "ALTERED SEED GERMINATION 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002685
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 IPI:IPI00520375 RefSeq:NP_973689.2 UniGene:At.47803
ProteinModelPortal:F4IV45 SMR:F4IV45 PRIDE:F4IV45
EnsemblPlants:AT2G44980.2 GeneID:819106 KEGG:ath:AT2G44980
OMA:WALMHFC PhylomeDB:F4IV45 ArrayExpress:F4IV45 Uniprot:F4IV45
Length = 877
Score = 185 (70.2 bits), Expect = 2.5e-17, Sum P(4) = 2.5e-17
Identities = 58/218 (26%), Positives = 102/218 (46%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCS-LRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
L+++ W ++DEAQ +KN + + RR ++GTPIQN++ +L++ F
Sbjct: 178 LSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFCM 237
Query: 566 YDPYAVYKSFYSTIK--------IPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPII 617
+ F S K + +S N YK L+ +L A MLRRTK I+ ++
Sbjct: 238 PLVFGTLDQFLSAFKETGDGLSGLDVS-NDKETYKSLKFILGAFMLRRTKSLLIESGNLV 296
Query: 618 NLPPKTISLTKVDFSKEEWAFYKKLESDSLKK-FKAFADAGTVNQNYANILLMLLRLRQA 676
LPP LT++ + KK+ + L+K + + N+ ++ ++++LR+A
Sbjct: 297 -LPP----LTELTVMVPLVSLQKKIYTSILRKELPGLLELSSGGSNHTSLQNIVIQLRKA 351
Query: 677 CDHPLL---VKEYDFDSVGKISGEMAKRLPRDMLIDLL 711
C HP L ++ F+ + K L D L+ L
Sbjct: 352 CSHPYLFPGIEPEPFEEGEHLVQASGKLLVLDQLLKRL 389
Score = 80 (33.2 bits), Expect = 2.5e-17, Sum P(4) = 2.5e-17
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDRE 903
++FSQ T LD++++ + Y RLDG++ R A+K+F+ E
Sbjct: 397 LLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAIKNFSAKTE 444
Score = 65 (27.9 bits), Expect = 2.5e-17, Sum P(4) = 2.5e-17
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 246 ERLIYQAALEDL--NQPKVEATLPDGL---LSVNLLKHQKIALAWMLQKETRSLHCLGGI 300
ER + +AA E + + K T PD ++ L HQ ++W++QK ++ + +
Sbjct: 18 ERRL-EAAAEIILEKEAKFSNTPPDCSEFGVTATLKPHQVEGVSWLIQKYLLGVNVV--L 74
Query: 301 LADDQGLGKTISIIALI 317
D GLGKT+ I+ +
Sbjct: 75 ELDQMGLGKTLQAISFL 91
Score = 60 (26.2 bits), Expect = 2.5e-17, Sum P(4) = 2.5e-17
Identities = 28/95 (29%), Positives = 42/95 (44%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--------DPVELAK------Y 433
LV+CP SV W E+ P+ L VL Y G + D V+ + +
Sbjct: 105 LVLCPLSVTDGWVSEINRFTPN---LEVLRYVGDKYCRLDMRKSMYDHVKKSSKGHFLPF 161
Query: 434 DVVLTTYSIVT------NEVPKQPSVDEEEADEKN 462
DV+LTTY I +++P Q ++ +E KN
Sbjct: 162 DVLLTTYDIALVDQDFLSQIPWQYAIIDEAQRLKN 196
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 174 (66.3 bits), Expect = 2.7e-17, Sum P(4) = 2.7e-17
Identities = 51/177 (28%), Positives = 90/177 (50%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +V+DEA IKN +++++ + R L+GTP+QN++ +L++ FL D
Sbjct: 226 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDV 285
Query: 569 YAVYKSFYSTIKIPISRNSLHGYK---KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+ F S ++N L K +L AVL+ +LRR K ++ +LPPK
Sbjct: 286 FNSADDFDSWFD---TKNCLGDQKLVERLHAVLKPFLLRRIKAE-VEK----SLPPKKEV 337
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ SK + +Y ++ +K AG +++ +L +L++LR+ C+HP L
Sbjct: 338 KIYLGLSKMQREWYTRI---LMKDIDILNSAGKMDK--MRLLNILMQLRKCCNHPYL 389
Score = 80 (33.2 bits), Expect = 2.7e-17, Sum P(4) = 2.7e-17
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++FSQ TR+LD++E+ +Y RLDG R+ A+ FN
Sbjct: 430 LLFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIDTFN 473
Score = 74 (31.1 bits), Expect = 2.7e-17, Sum P(4) = 2.7e-17
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L WM+ ++ GILAD+ GLGKT+ IAL+
Sbjct: 107 LRDYQVRGLNWMISLYENGVN---GILADEMGLGKTLQTIALL 146
Score = 65 (27.9 bits), Expect = 2.7e-17, Sum P(4) = 2.7e-17
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT---KDPVELAKYDVVLTTYSIVT 444
+V+ P S L W E + VP A+ LI +R +D + ++DV +T+Y +V
Sbjct: 160 MVLVPKSTLHNWMNEFKRWVPSLRAVC-LIGDKDARAAFIRDVMMPGEWDVCVTSYEMVI 218
Query: 445 NE 446
E
Sbjct: 219 KE 220
Score = 48 (22.0 bits), Expect = 1.1e-14, Sum P(4) = 1.1e-14
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 179 PSTVNSKGYIRDYYVKKNDDDIMMYEG--NRILPSSLMHGKSV 219
PS V G +RDY V+ + I +YE N IL + GK++
Sbjct: 99 PSYVKG-GTLRDYQVRGLNWMISLYENGVNGILADEMGLGKTL 140
>UNIPROTKB|E2QUR1 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AAEX03009852
Ensembl:ENSCAFT00000009072 Uniprot:E2QUR1
Length = 2200
Score = 203 (76.5 bits), Expect = 3.7e-17, Sum P(4) = 3.7e-17
Identities = 50/180 (27%), Positives = 95/180 (52%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L ++ W V++DEA +KN ++ + + + + L+GTP+QN++++L+S F
Sbjct: 551 CPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHF 610
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + F + + +KLQA+L+ +MLRR K D + NL PK
Sbjct: 611 LEPSQFPSESEFLKDFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--NLAPKQ 662
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K +F G + N N+L ++ LR+ C+HP L+
Sbjct: 663 ETIIEVELTNIQKKYYRAI----LEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 718
Score = 77 (32.2 bits), Expect = 3.7e-17, Sum P(4) = 3.7e-17
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F+
Sbjct: 765 GGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 813
Score = 70 (29.7 bits), Expect = 3.7e-17, Sum P(4) = 3.7e-17
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318
L ++Q + W+L +C ILAD+ GLGKTI IA +Q
Sbjct: 428 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFLQ 468
Score = 56 (24.8 bits), Expect = 3.7e-17, Sum P(4) = 3.7e-17
Identities = 15/83 (18%), Positives = 36/83 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
LV+ P S + W RE ++ ++YHG ++ ++
Sbjct: 480 LVIAPLSTITNWEREFNTWTE----MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAY 535
Query: 432 KYDVVLTTYSIVTNEVPKQPSVD 454
K+D ++TT+ ++ ++ P+ ++
Sbjct: 536 KFDALITTFEMILSDCPELREIE 558
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 194 (73.4 bits), Expect = 3.8e-17, Sum P(4) = 3.8e-17
Identities = 55/210 (26%), Positives = 104/210 (49%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W +V+DEA +++++++ R R + L+GTP+QN++++L+ FL
Sbjct: 398 LGCIDWAALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEELFHLLNFLSS 457
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ ++F + +S+ K+L +L MLRR K + ++PPK+ +
Sbjct: 458 GKFNDLQTFQAEFT-DVSKEEQ--VKRLHEILEPHMLRRLKADVLK-----SMPPKSEFI 509
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEY 686
+V+ S + FYK + + K FKA G ++L +++ LR+ C+HP L
Sbjct: 510 VRVELSSMQKKFYKHILT---KNFKALNQKG--GGRVCSLLNIMMDLRKCCNHPYLFPSA 564
Query: 687 DFDSVGKISG--EMAKRLPRDMLIDLLSRL 714
++ SG EM+ +DLLS++
Sbjct: 565 AEEATISPSGLYEMSSLTKASGKLDLLSKM 594
Score = 86 (35.3 bits), Expect = 3.8e-17, Sum P(4) = 3.8e-17
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++FSQ T+ML+++E+ L QY R+DG++ R +A+ FN
Sbjct: 606 LLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFN 649
Score = 54 (24.1 bits), Expect = 3.8e-17, Sum P(4) = 3.8e-17
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 300 ILADDQGLGKTISIIALI 317
ILAD+ GLGKTI + +
Sbjct: 289 ILADEMGLGKTIQTVVFL 306
Score = 54 (24.1 bits), Expect = 3.8e-17, Sum P(4) = 3.8e-17
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDV 435
L+ P S L W RELE P+ L + Y GG +T V + K+++
Sbjct: 320 LISVPLSTLTNWERELELWAPE---LYCVTYVGG-KTARAV-IRKHEI 362
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 178 (67.7 bits), Expect = 4.0e-17, Sum P(4) = 4.0e-17
Identities = 52/177 (29%), Positives = 92/177 (51%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +V+DEA IKN +++++ ++ R L+GTP+QN++ +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVRDFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 569 YAVYKSFYSTIKIPISRNSLHGYK---KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+ + F S ++N L K +L VL+ +LRR K T ++ +LPPK
Sbjct: 365 FNSAEDFDSWFD---TKNCLGDQKLVERLHTVLKPFLLRRIK-TDVEK----SLPPKKEI 416
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ SK + +Y K+ +K AG +++ +L +L++LR+ C+HP L
Sbjct: 417 KIYLGLSKMQREWYTKI---LMKDIDVLNSAGKMDK--MRLLNILMQLRKCCNHPYL 468
Score = 82 (33.9 bits), Expect = 4.0e-17, Sum P(4) = 4.0e-17
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF 898
++FSQ TR+LD++E+ +Y RLDG R+ +KDF
Sbjct: 509 LIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEILKDF 551
Score = 70 (29.7 bits), Expect = 4.0e-17, Sum P(4) = 4.0e-17
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ IAL+
Sbjct: 186 LRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 63 (27.2 bits), Expect = 4.0e-17, Sum P(4) = 4.0e-17
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRT---KDPVELAKYDVVLTTYSI 442
+V+ P S L W E + VP +L V+ + G +R +D + ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVP---SLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 443 VTNE 446
V E
Sbjct: 296 VIKE 299
>UNIPROTKB|F1MLB2 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:DAAA02028315 EMBL:DAAA02028312 EMBL:DAAA02028313
EMBL:DAAA02028314 IPI:IPI01017729 Ensembl:ENSBTAT00000027215
Uniprot:F1MLB2
Length = 2537
Score = 205 (77.2 bits), Expect = 4.3e-17, Sum P(4) = 4.3e-17
Identities = 54/210 (25%), Positives = 104/210 (49%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L ++ W V++DEA +KN ++ + + + + L+GTP+QN++++L+S F
Sbjct: 887 CPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHF 946
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + F + + +KLQA+L+ +MLRR K D + NL PK
Sbjct: 947 LEPSQFPSESEFLKDFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--NLAPKQ 998
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K +F G + N N+L ++ LR+ C+HP L+
Sbjct: 999 ETIIEVELTNIQKKYYRAI----LEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 1054
Query: 684 KEYDFDSVGKISGEMAKRLPRDMLIDLLSR 713
+ + E +P D + + R
Sbjct: 1055 NAGAEEKILTEFREACHIIPHDFHLQAMVR 1084
Score = 77 (32.2 bits), Expect = 4.3e-17, Sum P(4) = 4.3e-17
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F+
Sbjct: 1102 GGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 1150
Score = 70 (29.7 bits), Expect = 4.3e-17, Sum P(4) = 4.3e-17
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318
L ++Q + W+L +C ILAD+ GLGKTI IA +Q
Sbjct: 764 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFLQ 804
Score = 56 (24.8 bits), Expect = 4.3e-17, Sum P(4) = 4.3e-17
Identities = 15/83 (18%), Positives = 36/83 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
LV+ P S + W RE ++ ++YHG ++ ++
Sbjct: 816 LVIAPLSTITNWEREFNTWTE----MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAY 871
Query: 432 KYDVVLTTYSIVTNEVPKQPSVD 454
K+D ++TT+ ++ ++ P+ ++
Sbjct: 872 KFDALITTFEMILSDCPELREIE 894
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 177 (67.4 bits), Expect = 4.5e-17, Sum P(4) = 4.5e-17
Identities = 52/177 (29%), Positives = 92/177 (51%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +V+DEA IKN +++++ ++ R L+GTP+QN++ +L++ FL D
Sbjct: 306 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 365
Query: 569 YAVYKSFYSTIKIPISRNSLHGYK---KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+ F S ++N L K +L AVL+ +LRR K T ++ +LPPK
Sbjct: 366 FNSADDFDSWFD---TKNCLGDQKLVERLHAVLKPFLLRRIK-TDVEK----SLPPKKEI 417
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ SK + +Y K+ +K +G +++ +L +L++LR+ C+HP L
Sbjct: 418 KIYLGLSKMQREWYTKI---LMKDIDVLNSSGKMDK--MRLLNILMQLRKCCNHPYL 469
Score = 83 (34.3 bits), Expect = 4.5e-17, Sum P(4) = 4.5e-17
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++FSQ TR+LD++E+ +Y RLDG R+ A+ FN
Sbjct: 510 LIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREEAIDAFN 553
Score = 70 (29.7 bits), Expect = 4.5e-17, Sum P(4) = 4.5e-17
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ IAL+
Sbjct: 187 LRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 226
Score = 62 (26.9 bits), Expect = 4.5e-17, Sum P(4) = 4.5e-17
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-----DPVELAKYDVVLTTYSI 442
+V+ P S L W E + VP +L V+ + G + D + ++DV +T+Y +
Sbjct: 240 MVLVPKSTLHNWMNEFKRWVP---SLRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEM 296
Query: 443 VTNE 446
V E
Sbjct: 297 VIKE 300
>UNIPROTKB|F1S8J5 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:FP340603 Ensembl:ENSSSCT00000002379
ArrayExpress:F1S8J5 Uniprot:F1S8J5
Length = 2569
Score = 205 (77.2 bits), Expect = 4.5e-17, Sum P(4) = 4.5e-17
Identities = 54/210 (25%), Positives = 104/210 (49%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L ++ W V++DEA +KN ++ + + + + L+GTP+QN++++L+S F
Sbjct: 934 CPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHF 993
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + F + + +KLQA+L+ +MLRR K D + NL PK
Sbjct: 994 LEPSQFPSESEFLKDFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--NLAPKQ 1045
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K +F G + N N+L ++ LR+ C+HP L+
Sbjct: 1046 ETIIEVELTNIQKKYYRAI----LEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 1101
Query: 684 KEYDFDSVGKISGEMAKRLPRDMLIDLLSR 713
+ + E +P D + + R
Sbjct: 1102 NAGAEEKILTEFREACHIIPHDFHLQAMVR 1131
Score = 77 (32.2 bits), Expect = 4.5e-17, Sum P(4) = 4.5e-17
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F+
Sbjct: 1149 GGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 1197
Score = 70 (29.7 bits), Expect = 4.5e-17, Sum P(4) = 4.5e-17
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318
L ++Q + W+L +C ILAD+ GLGKTI IA +Q
Sbjct: 811 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFLQ 851
Score = 56 (24.8 bits), Expect = 4.5e-17, Sum P(4) = 4.5e-17
Identities = 15/83 (18%), Positives = 36/83 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
LV+ P S + W RE ++ ++YHG ++ ++
Sbjct: 863 LVIAPLSTITNWEREFNTWTE----MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAY 918
Query: 432 KYDVVLTTYSIVTNEVPKQPSVD 454
K+D ++TT+ ++ ++ P+ ++
Sbjct: 919 KFDALITTFEMILSDCPELREIE 941
>UNIPROTKB|E2QUS7 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:FLAYMED EMBL:AAEX03009852
Ensembl:ENSCAFT00000009065 Uniprot:E2QUS7
Length = 2586
Score = 205 (77.2 bits), Expect = 4.6e-17, Sum P(4) = 4.6e-17
Identities = 54/210 (25%), Positives = 104/210 (49%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L ++ W V++DEA +KN ++ + + + + L+GTP+QN++++L+S F
Sbjct: 934 CPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHF 993
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + F + + +KLQA+L+ +MLRR K D + NL PK
Sbjct: 994 LEPSQFPSESEFLKDFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--NLAPKQ 1045
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K +F G + N N+L ++ LR+ C+HP L+
Sbjct: 1046 ETIIEVELTNIQKKYYRAI----LEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 1101
Query: 684 KEYDFDSVGKISGEMAKRLPRDMLIDLLSR 713
+ + E +P D + + R
Sbjct: 1102 NAGAEEKILTEFREACHIIPHDFHLQAMVR 1131
Score = 77 (32.2 bits), Expect = 4.6e-17, Sum P(4) = 4.6e-17
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F+
Sbjct: 1149 GGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 1197
Score = 70 (29.7 bits), Expect = 4.6e-17, Sum P(4) = 4.6e-17
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318
L ++Q + W+L +C ILAD+ GLGKTI IA +Q
Sbjct: 811 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFLQ 851
Score = 56 (24.8 bits), Expect = 4.6e-17, Sum P(4) = 4.6e-17
Identities = 15/83 (18%), Positives = 36/83 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
LV+ P S + W RE ++ ++YHG ++ ++
Sbjct: 863 LVIAPLSTITNWEREFNTWTE----MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAY 918
Query: 432 KYDVVLTTYSIVTNEVPKQPSVD 454
K+D ++TT+ ++ ++ P+ ++
Sbjct: 919 KFDALITTFEMILSDCPELREIE 941
>RGD|620696 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10116 "Rattus norvegicus" [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0002039 "p53 binding"
evidence=ISO;ISS] [GO:0003677 "DNA binding" evidence=ISO;ISS]
[GO:0003678 "DNA helicase activity" evidence=ISO;ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008013 "beta-catenin binding" evidence=ISO;IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO;ISS] [GO:0030178
"negative regulation of Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO;ISS]
[GO:0042393 "histone binding" evidence=ISO;ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO;ISS] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO;ISS]
[GO:0043234 "protein complex" evidence=ISO;IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0045945 "positive regulation of
transcription from RNA polymerase III promoter" evidence=ISO;ISS]
[GO:0060070 "canonical Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0070016 "armadillo repeat domain binding"
evidence=IPI] [GO:0071339 "MLL1 complex" evidence=ISO;ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:620696 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
GO:GO:0002039 EMBL:CH474040 InterPro:IPR023780 PROSITE:PS00598
GO:GO:0008094 HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
EMBL:AF169825 IPI:IPI00201110 IPI:IPI00923717 RefSeq:NP_075222.2
UniGene:Rn.98337 STRING:Q9JIX5 PhosphoSite:Q9JIX5 PRIDE:Q9JIX5
Ensembl:ENSRNOT00000022593 GeneID:65027 KEGG:rno:65027
UCSC:RGD:620696 NextBio:613802 Genevestigator:Q9JIX5 Uniprot:Q9JIX5
Length = 2581
Score = 204 (76.9 bits), Expect = 5.9e-17, Sum P(4) = 5.9e-17
Identities = 54/210 (25%), Positives = 106/210 (50%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L ++ W V++DEA +KN ++ + + + + L+GTP+QN++++L+S F
Sbjct: 934 CPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHF 993
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + F + + +KLQA+L+ +MLRR K D + NL PK
Sbjct: 994 LEPSQFPSESEFLKDFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--NLAPKQ 1045
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K +F G + N N+L ++ LR+ C+HP L+
Sbjct: 1046 ETIIEVELTNIQKKYYRAI----LEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 1101
Query: 684 KEYDFDSVGKISGEMAKRLPRDMLIDLLSR 713
+ + + E +P+D + + R
Sbjct: 1102 NGAE-EKILMEFREACHIIPQDFHLQAMVR 1130
Score = 77 (32.2 bits), Expect = 5.9e-17, Sum P(4) = 5.9e-17
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F+
Sbjct: 1148 GGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 1196
Score = 70 (29.7 bits), Expect = 5.9e-17, Sum P(4) = 5.9e-17
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318
L ++Q + W+L +C ILAD+ GLGKTI IA +Q
Sbjct: 811 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFLQ 851
Score = 56 (24.8 bits), Expect = 5.9e-17, Sum P(4) = 5.9e-17
Identities = 15/83 (18%), Positives = 36/83 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
LV+ P S + W RE ++ ++YHG ++ ++
Sbjct: 863 LVIAPLSTITNWEREFNTWTE----MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAY 918
Query: 432 KYDVVLTTYSIVTNEVPKQPSVD 454
K+D ++TT+ ++ ++ P+ ++
Sbjct: 919 KFDALITTFEMILSDCPELREIE 941
>MGI|MGI:1915022 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0002039 "p53 binding" evidence=IPI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=ISO;IDA] [GO:0003678 "DNA helicase activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=ISO] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISO] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0030178 "negative regulation of Wnt receptor
signaling pathway" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0035064 "methylated histone residue binding"
evidence=ISO] [GO:0042393 "histone binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP;IDA] [GO:0043234 "protein complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0045945 "positive regulation of transcription
from RNA polymerase III promoter" evidence=ISO] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=ISO]
[GO:0070016 "armadillo repeat domain binding" evidence=ISO]
[GO:0071339 "MLL1 complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 MGI:MGI:1915022 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 GO:GO:0008094
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
OMA:FLAYMED EMBL:DQ190419 EMBL:AY863219 EMBL:AK129393 EMBL:AK160299
IPI:IPI00858099 IPI:IPI00923681 RefSeq:NP_963999.2
UniGene:Mm.289934 ProteinModelPortal:Q09XV5 SMR:Q09XV5
IntAct:Q09XV5 STRING:Q09XV5 PhosphoSite:Q09XV5 PaxDb:Q09XV5
PRIDE:Q09XV5 Ensembl:ENSMUST00000089752 GeneID:67772 KEGG:mmu:67772
UCSC:uc007tot.1 UCSC:uc007tov.1 InParanoid:Q09XV5 ChiTaRS:CHD8
NextBio:325525 Bgee:Q09XV5 Genevestigator:Q09XV5 Uniprot:Q09XV5
Length = 2582
Score = 204 (76.9 bits), Expect = 5.9e-17, Sum P(4) = 5.9e-17
Identities = 54/210 (25%), Positives = 106/210 (50%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L ++ W V++DEA +KN ++ + + + + L+GTP+QN++++L+S F
Sbjct: 936 CPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHF 995
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + F + + +KLQA+L+ +MLRR K D + NL PK
Sbjct: 996 LEPSQFPSESEFLKDFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--NLAPKQ 1047
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K +F G + N N+L ++ LR+ C+HP L+
Sbjct: 1048 ETIIEVELTNIQKKYYRAI----LEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 1103
Query: 684 KEYDFDSVGKISGEMAKRLPRDMLIDLLSR 713
+ + + E +P+D + + R
Sbjct: 1104 NGAE-EKILMEFREACHIIPQDFHLQAMVR 1132
Score = 77 (32.2 bits), Expect = 5.9e-17, Sum P(4) = 5.9e-17
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F+
Sbjct: 1150 GGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 1198
Score = 70 (29.7 bits), Expect = 5.9e-17, Sum P(4) = 5.9e-17
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318
L ++Q + W+L +C ILAD+ GLGKTI IA +Q
Sbjct: 813 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFLQ 853
Score = 56 (24.8 bits), Expect = 5.9e-17, Sum P(4) = 5.9e-17
Identities = 15/83 (18%), Positives = 36/83 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
LV+ P S + W RE ++ ++YHG ++ ++
Sbjct: 865 LVIAPLSTITNWEREFNTWTE----MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAY 920
Query: 432 KYDVVLTTYSIVTNEVPKQPSVD 454
K+D ++TT+ ++ ++ P+ ++
Sbjct: 921 KFDALITTFEMILSDCPELREIE 943
>UNIPROTKB|Q03468 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0007256 "activation of JNKK activity" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEA] [GO:0010332 "response
to gamma radiation" evidence=IEA] [GO:0045494 "photoreceptor cell
maintenance" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0009411 "response to UV"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0006284
"base-excision repair" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0005730 GO:GO:0032403 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 Orphanet:279 GO:GO:0045494
GO:GO:0010332 GO:GO:0006366 GO:GO:0004386 GO:GO:0010165
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 EMBL:CH471187 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 Orphanet:1466 EMBL:L04791 EMBL:AY204752 EMBL:AL138760
IPI:IPI00414779 PIR:A44224 RefSeq:NP_000115.1 UniGene:Hs.654449
ProteinModelPortal:Q03468 SMR:Q03468 DIP:DIP-193N IntAct:Q03468
MINT:MINT-1193928 STRING:Q03468 PhosphoSite:Q03468 DMDM:416959
PaxDb:Q03468 PRIDE:Q03468 Ensembl:ENST00000355832 GeneID:2074
KEGG:hsa:2074 UCSC:uc001jhr.4 CTD:2074 GeneCards:GC10M050663
HGNC:HGNC:3438 MIM:133540 MIM:214150 MIM:278800 MIM:600630
MIM:609413 MIM:613761 neXtProt:NX_Q03468 Orphanet:90321
Orphanet:90322 Orphanet:90324 Orphanet:1569 Orphanet:178338
PharmGKB:PA27852 HOGENOM:HOG000170952 HOVERGEN:HBG051502
InParanoid:Q03468 KO:K10841 OMA:NGEMQIF OrthoDB:EOG476JZF
PhylomeDB:Q03468 ChiTaRS:ERCC6 GenomeRNAi:2074 NextBio:8437
ArrayExpress:Q03468 Bgee:Q03468 CleanEx:HS_ERCC6
Genevestigator:Q03468 GermOnline:ENSG00000032514 GO:GO:0000303
Uniprot:Q03468
Length = 1493
Score = 153 (58.9 bits), Expect = 6.4e-17, Sum P(4) = 6.4e-17
Identities = 48/180 (26%), Positives = 81/180 (45%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
+++ W V+LDE I+N V AC R R LSG+P+QN++ +L+S F F+
Sbjct: 635 ISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFP 694
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQ---AVLRAIMLRRTKGTFIDGQPIINLPPKT 623
F +PI+ +Q A A +LR T ++ + ++
Sbjct: 695 GKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVK--- 751
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQ---NYANILLMLLRLRQACDHP 680
+SL+ D K E + +L + K ++ F D+ V + I L+ LR+ C+HP
Sbjct: 752 MSLSLPD--KNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEMQIFSGLIALRKICNHP 809
Score = 99 (39.9 bits), Expect = 6.4e-17, Sum P(4) = 6.4e-17
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 269 GLLSVNLLKHQKIALAWMLQKETRSLHC--LGGILADDQGLGKTISIIALI 317
G L L K+Q+ + W+ + LHC GGIL D+ GLGKTI IIA +
Sbjct: 501 GFLFKKLFKYQQTGVRWLWE-----LHCQQAGGILGDEMGLGKTIQIIAFL 546
Score = 77 (32.2 bits), Expect = 6.4e-17, Sum P(4) = 6.4e-17
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++FSQ +MLD++E L Y ++DGT ++ +R + +N D +
Sbjct: 859 LLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNEDTSI 907
Score = 70 (29.7 bits), Expect = 6.4e-17, Sum P(4) = 6.4e-17
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK-----YDVVLTTYS 441
T++VCP +V+ QW +E P +++ GS T +L + + +++T+YS
Sbjct: 569 TVIVCPTTVMHQWVKEFHTWWPPFRV--AILHETGSYTHKKEKLIRDVAHCHGILITSYS 626
Query: 442 IV 443
+
Sbjct: 627 YI 628
Score = 37 (18.1 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 455 EEEADEKNGETYGLSSEFS 473
EEE +E++ E G ++ S
Sbjct: 378 EEEEEEEDDEVEGAEADLS 396
>UNIPROTKB|Q9HCK8 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0070016 "armadillo repeat
domain binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IDA]
[GO:0030178 "negative regulation of Wnt receptor signaling pathway"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003678 "DNA helicase activity" evidence=IMP] [GO:0035064
"methylated histone residue binding" evidence=IDA] [GO:0045945
"positive regulation of transcription from RNA polymerase III
promoter" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IMP] [GO:0043234 "protein complex" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISS] [GO:0008013 "beta-catenin
binding" evidence=IDA] [GO:0071339 "MLL1 complex" evidence=IDA]
[GO:0042393 "histone binding" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 Pfam:PF00385
GO:GO:0005524 GO:GO:0045892 GO:GO:0043066 GO:GO:0003677
GO:GO:0001701 GO:GO:0045944 GO:GO:0006351 GO:GO:0035064
GO:GO:0008013 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0043044 GO:GO:0071339 GO:GO:0002039 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0008094 HOVERGEN:HBG107676 EMBL:CR749315
EMBL:AL834524 EMBL:AL135744 EMBL:AL161747 EMBL:CB043942
EMBL:AB046784 EMBL:AK131077 EMBL:BC011695 EMBL:BC025964
EMBL:BC036920 EMBL:BC063693 EMBL:BC073903 EMBL:BC098452
IPI:IPI00398992 IPI:IPI00719073 RefSeq:NP_001164100.1
RefSeq:NP_065971.2 UniGene:Hs.530698 PDB:2CKA PDB:2DL6 PDBsum:2CKA
PDBsum:2DL6 ProteinModelPortal:Q9HCK8 SMR:Q9HCK8 IntAct:Q9HCK8
STRING:Q9HCK8 PhosphoSite:Q9HCK8 DMDM:226706293 PaxDb:Q9HCK8
PRIDE:Q9HCK8 Ensembl:ENST00000399982 Ensembl:ENST00000430710
Ensembl:ENST00000557364 GeneID:57680 KEGG:hsa:57680 UCSC:uc001war.2
UCSC:uc001was.2 CTD:57680 GeneCards:GC14M021853 HGNC:HGNC:20153
HPA:HPA000849 MIM:610528 neXtProt:NX_Q9HCK8 PharmGKB:PA134957052
KO:K04494 OMA:FLAYMED EvolutionaryTrace:Q9HCK8 GenomeRNAi:57680
NextBio:64494 ArrayExpress:Q9HCK8 Bgee:Q9HCK8 CleanEx:HS_CHD8
Genevestigator:Q9HCK8 GermOnline:ENSG00000100888 Uniprot:Q9HCK8
Length = 2581
Score = 203 (76.5 bits), Expect = 7.4e-17, Sum P(4) = 7.4e-17
Identities = 50/180 (27%), Positives = 95/180 (52%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L ++ W V++DEA +KN ++ + + + + L+GTP+QN++++L+S F
Sbjct: 934 CPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHF 993
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + F + + +KLQA+L+ +MLRR K D + NL PK
Sbjct: 994 LEPSQFPSESEFLKDFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--NLAPKQ 1045
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K +F G + N N+L ++ LR+ C+HP L+
Sbjct: 1046 ETIIEVELTNIQKKYYRAI----LEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLI 1101
Score = 77 (32.2 bits), Expect = 7.4e-17, Sum P(4) = 7.4e-17
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F+
Sbjct: 1148 GGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 1196
Score = 70 (29.7 bits), Expect = 7.4e-17, Sum P(4) = 7.4e-17
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318
L ++Q + W+L +C ILAD+ GLGKTI IA +Q
Sbjct: 811 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIAFLQ 851
Score = 56 (24.8 bits), Expect = 7.4e-17, Sum P(4) = 7.4e-17
Identities = 15/83 (18%), Positives = 36/83 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
LV+ P S + W RE ++ ++YHG ++ ++
Sbjct: 863 LVIAPLSTITNWEREFNTWTE----MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAY 918
Query: 432 KYDVVLTTYSIVTNEVPKQPSVD 454
K+D ++TT+ ++ ++ P+ ++
Sbjct: 919 KFDALITTFEMILSDCPELREIE 941
Score = 42 (19.8 bits), Expect = 4.1e-13, Sum P(3) = 4.1e-13
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 427 PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEA 458
P EL+K SI ++ QP+ E+ A
Sbjct: 75 PTELSKESTAPAPESITLHDYTTQPASQEQPA 106
>FB|FBgn0022787 [details] [associations]
symbol:Hel89B "Helicase 89B" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0006963 "positive regulation of antibacterial
peptide biosynthetic process" evidence=IMP] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0045087 "innate immune
response" evidence=IMP] [GO:0008063 "Toll signaling pathway"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0042742 GO:GO:0045087
GO:GO:0004003 GO:GO:0019730 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008063 GO:GO:0006963
InterPro:IPR022707 Pfam:PF12054 EMBL:AF033104
ProteinModelPortal:Q71V44 SMR:Q71V44 STRING:Q71V44 PaxDb:Q71V44
PRIDE:Q71V44 FlyBase:FBgn0022787 InParanoid:Q71V44
OrthoDB:EOG4ZGMT5 ArrayExpress:Q71V44 Bgee:Q71V44 Uniprot:Q71V44
Length = 1924
Score = 171 (65.3 bits), Expect = 7.8e-17, Sum P(4) = 7.8e-17
Identities = 60/198 (30%), Positives = 92/198 (46%)
Query: 516 VLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSF 575
VLDE IKN +T+ ++A L+A R LSGTPIQN++ +L+S F FL K F
Sbjct: 1482 VLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQF 1541
Query: 576 YSTIKIPI--SRNSLHGYKKLQA-VLRAIMLRRTKGTF----IDGQPIINLPPKTISLTK 628
PI SR++ K+ +A VL L R F + + +LPPK
Sbjct: 1542 VQRFSRPILSSRDAKSSAKEQEAGVLAMEALHRQVLPFLLRRVKEDVLKDLPPKITQDLL 1601
Query: 629 VDFSKEEWAFYKKLES----DSLKKFKAFADAGTVNQNYA---NILLMLLRLRQACDHPL 681
+ S + Y+ + D L K + A V +N + +I L L+ C+HP
Sbjct: 1602 CELSPLQLRLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVCNHPK 1661
Query: 682 LVKEYDFDSVGKISGEMA 699
LV + + K++ ++A
Sbjct: 1662 LVLRQS-EELTKVTSQLA 1678
Score = 85 (35.0 bits), Expect = 7.8e-17, Sum P(4) = 7.8e-17
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 854 KSIVFSQWTRMLDLVENSL-NQHC--IQYRRLDGTMSLPARDRAVKDFNTDREV 904
++++F Q MLD+VE L +H + Y RLDG++ R V +FN+D +
Sbjct: 1716 RALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSI 1769
Score = 81 (33.6 bits), Expect = 7.8e-17, Sum P(4) = 7.8e-17
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 260 PKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
P + +P +SV L +Q+ + W+ +LH GIL DD GLGKT+ I ++
Sbjct: 1339 PNYKVPVP---ISVELRCYQQAGINWLWFLNKYNLH---GILCDDMGLGKTLQTICIL 1390
Score = 65 (27.9 bits), Expect = 7.8e-17, Sum P(4) = 7.8e-17
Identities = 17/64 (26%), Positives = 33/64 (51%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRTKDPVELA-KYDVVLTTYSIV 443
+LV+CP ++ W E+E + + L L Y+G R K ++ K ++V+ +Y V
Sbjct: 1407 SLVICPPTLTGHWVYEVEKFLDQGSVLRPLHYYGFPVGREKLRSDIGTKCNLVVASYDTV 1466
Query: 444 TNEV 447
++
Sbjct: 1467 RKDI 1470
Score = 40 (19.1 bits), Expect = 9.0e-11, Sum P(3) = 9.0e-11
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 454 DEEEADEKNGETYGLSSE 471
DE+ A ++G TY +++E
Sbjct: 195 DEDVALNRSGSTYNVNAE 212
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 151 (58.2 bits), Expect = 7.9e-17, Sum P(4) = 7.9e-17
Identities = 48/177 (27%), Positives = 86/177 (48%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAV 571
W ++LDEAQ IKN ++Q + + +RR L+GTP+QN + +L+S FL ++
Sbjct: 1036 WKYLILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGTPLQNDLMELWSLMHFLMPYVFSS 1095
Query: 572 YKSFYSTIKIPISRNSLHG---YK-----KLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
++ F P++ + G Y +L V+R +LRR K ++ Q +P K
Sbjct: 1096 HREFKEWFSNPMT-GMIEGNMEYNETLITRLHKVIRPFLLRRLKKE-VEKQ----MPKKY 1149
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHP 680
+ S + Y+ S + K + G N +++ +L++LR+ C+HP
Sbjct: 1150 EHVITCRLSNRQRYLYEDFMSRA--KTRETLQTG----NLLSVINVLMQLRKVCNHP 1200
Score = 106 (42.4 bits), Expect = 7.9e-17, Sum P(4) = 7.9e-17
Identities = 36/91 (39%), Positives = 49/91 (53%)
Query: 234 SGSADERAVGGDERLIYQAALEDLNQPK---VEAT---LP-DGLLSVNLLKHQKIALAWM 286
SGS + D+ L AAL + QPK + +T P LL +L ++Q I L W+
Sbjct: 866 SGSTAGASGNKDDMLNDAAALAESLQPKGNTLSSTNVVTPVPFLLKHSLREYQHIGLDWL 925
Query: 287 LQKETRSLHCLGGILADDQGLGKTISIIALI 317
+ R L+ GILAD+ GLGKTI IAL+
Sbjct: 926 VTMNERKLN---GILADEMGLGKTIQTIALL 953
Score = 95 (38.5 bits), Expect = 7.9e-17, Sum P(4) = 7.9e-17
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++F+Q T+MLD++E LN H Y RLDG+ + R ++ FN D+ +
Sbjct: 1678 LIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILMERFNGDKRI 1726
Score = 60 (26.2 bits), Expect = 7.9e-17, Sum P(4) = 7.9e-17
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKD--PVELAK---YDVVLTTYSI 442
L+V P+SV+ W E + P +L Y+G + + V K + V +T+Y +
Sbjct: 967 LIVVPSSVMLNWEMEFKKWCP---GFKILTYYGSQKERKLKRVGWTKPNAFHVCITSYKL 1023
Query: 443 VTNE 446
V +
Sbjct: 1024 VVQD 1027
Score = 39 (18.8 bits), Expect = 1.4e-05, Sum P(4) = 1.4e-05
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 622 KTISLTKVDFSKEEWAFYKKLESDSLKKFKA 652
K + + F +++W + E+ ++K FK+
Sbjct: 1022 KLVVQDQQSFRRKKWKYLILDEAQNIKNFKS 1052
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 149 (57.5 bits), Expect = 8.3e-17, Sum P(4) = 8.3e-17
Identities = 49/177 (27%), Positives = 88/177 (49%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAV 571
W ++LDEA IKN ++Q + + +KRR L+GTP+QN + +L+S FL +
Sbjct: 658 WKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQS 717
Query: 572 YKSFYSTIKIPISRNSLHGYKK--------LQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
++ F PI+ + G +K L VLR +LRR K ++ Q LP K
Sbjct: 718 HQEFKDWFCNPIA-GMVEGQEKINKEVIDRLHNVLRPFLLRRLKRD-VEKQ----LPSKH 771
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHP 680
+ SK + Y+ + + + +A +G+ + ++ ++++LR+ C+HP
Sbjct: 772 EHVIFCRLSKRQRNLYEDFIAST--ETQATLTSGS----FFGMISIIMQLRKVCNHP 822
Score = 99 (39.9 bits), Expect = 8.3e-17, Sum P(4) = 8.3e-17
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 261 KVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
KV LP LL +L ++Q I L W++ + L+ GILAD+ GLGKTI IAL+
Sbjct: 523 KVRTKLPF-LLKHSLREYQHIGLDWLVTMYEKKLN---GILADEMGLGKTIMTIALL 575
Score = 92 (37.4 bits), Expect = 8.3e-17, Sum P(4) = 8.3e-17
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
G ++++F+Q T+MLD++E +N + Y RLDG+ R ++ FNT+ ++
Sbjct: 1090 GGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKI 1143
Score = 64 (27.6 bits), Expect = 8.3e-17, Sum P(4) = 8.3e-17
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-----VELAKYDVVLTTYSI 442
L+V P SV+ W E P A +L Y G ++ + ++L + V +TTY +
Sbjct: 589 LIVVPTSVMLNWETEFLKWCP---AFKILTYFGSAKERKLKRQGWMKLNSFHVCITTYRL 645
Query: 443 VTNE 446
V +
Sbjct: 646 VIQD 649
Score = 42 (19.8 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 444 TNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRK 479
T E PK+P + D E LS +F +K K
Sbjct: 34 TLEAPKEPRRPKTHWDHVLEEMAWLSKDFESERKWK 69
Score = 38 (18.4 bits), Expect = 2.1e-11, Sum P(4) = 2.1e-11
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 876 CIQYRRLDGTMSLPARDRAV--KDFNT 900
C +YR L L A D AV K+ NT
Sbjct: 1720 CERYRELIQRHILSASDSAVNEKNLNT 1746
>UNIPROTKB|B5DE69 [details] [associations]
symbol:chd8 "Chromodomain-helicase-DNA-binding protein 8"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0071339 "MLL1 complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0016055 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG107676 CTD:57680
KO:K04494 EMBL:BC168549 RefSeq:NP_001131089.2 UniGene:Str.42730
GeneID:100192376 KEGG:xtr:100192376 Xenbase:XB-GENE-966847
Uniprot:B5DE69
Length = 2184
Score = 203 (76.5 bits), Expect = 9.2e-17, Sum P(4) = 9.2e-17
Identities = 54/210 (25%), Positives = 105/210 (50%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L ++ W V++DEA +KN ++ + + + + L+GTP+QN++++L+S F
Sbjct: 878 CPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHF 937
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ ++ F + + +KLQA+L+ +MLRR K D + NL PK
Sbjct: 938 LEPTQFSSEAEFLKDFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--NLAPKQ 989
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K +F G N N+L ++ LR+ C+HP L+
Sbjct: 990 ETIIEVELTNIQKKYYRAI----LEKNFSFLTKGASQSNTPNLLNTMMELRKCCNHPYLI 1045
Query: 684 KEYDFDSVGKISGEMAKRLPRDMLIDLLSR 713
+ + + E +P D + + R
Sbjct: 1046 TGAEEKIISEFR-EATPVVPPDFHVQAMVR 1074
Score = 77 (32.2 bits), Expect = 9.2e-17, Sum P(4) = 9.2e-17
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F+
Sbjct: 1092 GGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNMRQAAIDRFS 1140
Score = 66 (28.3 bits), Expect = 9.2e-17, Sum P(4) = 9.2e-17
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318
L ++Q + W+L +C ILAD+ GLGKTI I +Q
Sbjct: 755 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSITFLQ 795
Score = 56 (24.8 bits), Expect = 9.2e-17, Sum P(4) = 9.2e-17
Identities = 16/83 (19%), Positives = 36/83 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
LV+ P S + W RE ++ ++YHG ++ ++
Sbjct: 807 LVIAPLSTITNWEREFGSWTQ----MNTIVYHGSLASRQMIQQYEMYCKDSKGRLIPGAY 862
Query: 432 KYDVVLTTYSIVTNEVPKQPSVD 454
K+D ++TT+ +V ++ P+ ++
Sbjct: 863 KFDALITTFEMVLSDCPELREIE 885
Score = 44 (20.5 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 443 VTNEVPKQPSVDEEEAD---EKNGETYGLSSEFSVNKKRKKI 481
V NE + PSV+ E+ D K + G +S+ S ++K KK+
Sbjct: 422 VLNE-DELPSVNPEDDDGSRRKRKKKKGETSDRSKDEKPKKV 462
Score = 42 (19.8 bits), Expect = 2.4e-13, Sum P(3) = 2.4e-13
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 438 TTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKR 478
T IV + + PS D +A+ + E SV K+R
Sbjct: 478 TITPIVGKKRKRNPSSDNSDAEIMASQASPAEDEDSVQKRR 518
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 143 (55.4 bits), Expect = 9.2e-17, Sum P(4) = 9.2e-17
Identities = 46/175 (26%), Positives = 77/175 (44%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAV 571
W V+LDE I+N V AC R R LSG+P+QN++ +L+S F F+
Sbjct: 635 WHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLKELWSLFDFVFPGKLGT 694
Query: 572 YKSFYSTIKIPISRNSLHGYKKLQ---AVLRAIMLRRTKGTFIDGQPIINLPPKTISLTK 628
F +PI+ +Q A A +LR ++ + ++ +SL+
Sbjct: 695 LPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDAINPYLLRRMKADVK---MSLSL 751
Query: 629 VDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQ---NYANILLMLLRLRQACDHP 680
D K E + +L + + ++ F D+ V Q + L+ LR+ C+HP
Sbjct: 752 PD--KNEQVLFCRLTDEQRQVYQNFIDSKEVYQILNGDMQVFSGLVALRKICNHP 804
Score = 100 (40.3 bits), Expect = 9.2e-17, Sum P(4) = 9.2e-17
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 246 ERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHC--LGGILAD 303
ER + + ++ + E G L L K+Q+ + W+ + LHC GGIL D
Sbjct: 473 ERSVAEELSDESDTEFEEGFKVPGFLFKKLFKYQQTGVRWLWE-----LHCQQAGGILGD 527
Query: 304 DQGLGKTISIIALI 317
+ GLGKTI IIA +
Sbjct: 528 EMGLGKTIQIIAFL 541
Score = 81 (33.6 bits), Expect = 9.2e-17, Sum P(4) = 9.2e-17
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK-----YDVVLTTYS 441
T++VCPA+V+ QW +E P +++ GS T V+L + + +++T+YS
Sbjct: 564 TVIVCPATVMHQWVKEFHTWWPPFRV--AILHETGSYTNKKVKLIREIASCHGILITSYS 621
Query: 442 IV 443
+
Sbjct: 622 YI 623
Score = 74 (31.1 bits), Expect = 9.2e-17, Sum P(4) = 9.2e-17
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
+ F+Q +ML ++E L Y R+DGT ++ +R + +N D+ +
Sbjct: 855 LFFTQSRQMLQILEVFLRDRNYSYLRMDGTTTIASRQPLITRYNEDKSI 903
>ZFIN|ZDB-GENE-060531-56 [details] [associations]
symbol:ercc6l "excision repair cross-complementing
rodent repair deficiency, complementation group 6-like"
species:7955 "Danio rerio" [GO:0016539 "intein-mediated protein
splicing" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0000777
"condensed chromosome kinetochore" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR006141 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060531-56 GO:GO:0005524 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
GO:GO:0016539 CTD:54821 GeneTree:ENSGT00590000083118
OrthoDB:EOG4FR0RD EMBL:CR391924 EMBL:BX510925 EMBL:BC150168
IPI:IPI00635423 RefSeq:NP_001093563.1 UniGene:Dr.38615
ProteinModelPortal:A2BGR3 Ensembl:ENSDART00000015401
GeneID:100005291 KEGG:dre:100005291 InParanoid:A2BGR3
NextBio:20786618 Bgee:A2BGR3 Uniprot:A2BGR3
Length = 1451
Score = 119 (46.9 bits), Expect = 9.8e-17, Sum P(5) = 9.8e-17
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFL-KYDPYA 570
W V+LDEA IK T+ A++ ++ AK R L+GTP+QN++ ++++ F F +
Sbjct: 231 WDYVILDEAHKIKTSSTKTAKSAHAIPAKNRVLLTGTPVQNNLREMWALFDFACQGSLLG 290
Query: 571 VYKSFYSTIKIPISR 585
K+F + + PI+R
Sbjct: 291 TSKTFKTEYENPITR 305
Score = 91 (37.1 bits), Expect = 9.8e-17, Sum P(5) = 9.8e-17
Identities = 45/162 (27%), Positives = 69/162 (42%)
Query: 158 VENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYEGNRILPSSLMHGK 217
+E+ N ++ D FG L T Y D Y +K + + N LP +L +
Sbjct: 1 MESNNVEEVTDKFGGCLSL---DTEKMGKY--DRYRQKGKEAAL----NGELPRALELFQ 51
Query: 218 SVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLK 277
Q PS+ + A + + ++ + E +N L GL L
Sbjct: 52 LAYQLQ---PSEKLKKRIQAIQDLIQREDEEDEEEEEEFVNVNNSGLKLYKGLYD-KLYD 107
Query: 278 HQK--IALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
HQK +A + L ++ R GGILADD GLGKTI +I+ +
Sbjct: 108 HQKEGVAFLYSLYRDGRK----GGILADDMGLGKTIQVISFL 145
Score = 88 (36.0 bits), Expect = 9.8e-17, Sum P(5) = 9.8e-17
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMS-LPARDRAVKDFNTDR 902
++++FSQ +MLD++E L + RLDGT++ L R++ + F TD+
Sbjct: 493 RTLIFSQSRKMLDIMERVLRNRNFRLLRLDGTVTQLAEREKRISLFQTDK 542
Score = 83 (34.3 bits), Expect = 9.8e-17, Sum P(5) = 9.8e-17
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYD----VVLTTYSI 442
TL+V P S+++ W RE P + V +HG S+T+ L + V++TTY +
Sbjct: 157 TLLVMPTSLIKNWVREFAKWTP---GMRVKEFHGSSKTERNRNLERIQRKGGVIITTYQM 213
Query: 443 VTN 445
+ N
Sbjct: 214 LIN 216
Score = 60 (26.2 bits), Expect = 9.8e-17, Sum P(5) = 9.8e-17
Identities = 17/83 (20%), Positives = 35/83 (42%)
Query: 636 WAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKIS 695
W + ++ D KF + + + L L L++ CDHP L+ + +G
Sbjct: 384 WTYLSSVQEDIYNKFISLDQIKELLTTTRSPLAELTVLKKLCDHPRLLSQRAVIQLGLER 443
Query: 696 GEMAKRLPRDMLIDLLSRLETSS 718
G ++ + D +S+++ S
Sbjct: 444 GSDSELVHSDESESAVSQIDNIS 466
>UNIPROTKB|D3ZZZ1 [details] [associations]
symbol:Ercc6 "Protein Ercc6" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311509
GO:GO:0005524 GO:GO:0008630 GO:GO:0005730 GO:GO:0006284
GO:GO:0003677 GO:GO:0009636 GO:GO:0003682 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257
GO:GO:0006283 GO:GO:0008094 GO:GO:0008023 GO:GO:0032786
GO:GO:0006290 GO:GO:0007256 GO:GO:0000303 IPI:IPI00358023
Ensembl:ENSRNOT00000038493 ArrayExpress:D3ZZZ1 Uniprot:D3ZZZ1
Length = 1475
Score = 151 (58.2 bits), Expect = 9.9e-17, Sum P(4) = 9.9e-17
Identities = 50/180 (27%), Positives = 82/180 (45%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
+++ W V+LDE I+N V AC R R LSG+P+QN++ +L+S F F
Sbjct: 629 ISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFTFP 688
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQ---AVLRAIMLRRTKGTFIDGQPIINLPPKT 623
F +PI+ +Q A A +LR T ++ + ++
Sbjct: 689 GKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVK--- 745
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQ--NYAN-ILLMLLRLRQACDHP 680
+SL+ D K E + +L + K ++ F D+ V + N N I L+ LR+ C+HP
Sbjct: 746 MSLSLPD--KNEQVLFCRLTDEQHKVYQNFIDSKAVYRILNGENQIFSGLVALRKICNHP 803
Score = 99 (39.9 bits), Expect = 9.9e-17, Sum P(4) = 9.9e-17
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 269 GLLSVNLLKHQKIALAWMLQKETRSLHC--LGGILADDQGLGKTISIIALI 317
G L L K+Q+ + W+ + LHC GGIL D+ GLGKTI IIA +
Sbjct: 495 GFLFKKLFKYQQTGVRWLWE-----LHCQQAGGILGDEMGLGKTIQIIAFL 540
Score = 80 (33.2 bits), Expect = 9.9e-17, Sum P(4) = 9.9e-17
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++FSQ +ML ++E L H Y ++DGT ++ +R + +N D +
Sbjct: 853 LLFSQSRQMLHILEVFLRAHKYSYLKMDGTTTIASRQPLITKYNEDTSI 901
Score = 67 (28.6 bits), Expect = 9.9e-17, Sum P(4) = 9.9e-17
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK-----YDVVLTTYS 441
TL+VCP +V+ QW +E P +++ GS L + + V++T+YS
Sbjct: 563 TLIVCPTTVMHQWVKEFHTWWPPFRV--AILHETGSCAHRKERLVRDIVHCHGVLITSYS 620
Query: 442 IV 443
+
Sbjct: 621 YI 622
>MGI|MGI:95453 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:10090 "Mus musculus" [GO:0000018 "regulation
of DNA recombination" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0051304 "chromosome separation" evidence=ISO] [GO:0070932
"histone H3 deacetylation" evidence=ISO] [GO:0070933 "histone H4
deacetylation" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95453 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0043596 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0000792 GO:GO:0070932 GO:GO:0070933
GO:GO:0000729 GO:GO:0000018 HOGENOM:HOG000172362 GO:GO:0035861
KO:K14439 GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
CTD:56916 HOVERGEN:HBG055804 EMBL:X69942 EMBL:AK122454
EMBL:BC042442 EMBL:AK134442 EMBL:AK147884 IPI:IPI00223926
IPI:IPI00556837 PIR:A56559 RefSeq:NP_001240321.1 RefSeq:NP_031984.1
UniGene:Mm.99113 ProteinModelPortal:Q04692 SMR:Q04692 STRING:Q04692
PhosphoSite:Q04692 PaxDb:Q04692 PRIDE:Q04692
Ensembl:ENSMUST00000031984 GeneID:13990 KEGG:mmu:13990
UCSC:uc009ced.1 UCSC:uc012emw.1 InParanoid:Q04692 OrthoDB:EOG4RV2QW
NextBio:284868 Bgee:Q04692 Genevestigator:Q04692
GermOnline:ENSMUSG00000029920 Uniprot:Q04692
Length = 1021
Score = 119 (46.9 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
Identities = 42/180 (23%), Positives = 88/180 (48%)
Query: 516 VLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYA----- 570
+ DE +KN + + ++ A+ R L+GTP+QN++ +L S F+ ++
Sbjct: 621 IFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 680
Query: 571 VYKSFYSTIKIPISRNSLHGYKKL---QAVLRAIMLRRTKGTFIDGQPIINL-PPKTISL 626
+ + F S K P S++ +++ + +++ +LRR K + ++ L PPK +
Sbjct: 681 IRRMFSSKTK-PADEQSIYEKERIAHAKQIIKPFILRRVK------EEVLKLLPPKKDRI 733
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEY 686
S+++ Y L + LKK + +N + ++++LR+ +HPLL ++Y
Sbjct: 734 ELCAMSEKQEQLYSGL-FNRLKK-----SINNLEKN-TEMCNVMMQLRKMANHPLLHRQY 786
Score = 105 (42.0 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++FSQ+T MLD++E L H +Y RLDG + R + +FNTD ++
Sbjct: 869 VLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDI 917
Score = 92 (37.4 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S++L +QK+ L W+ H L GILAD+ GLGKTI IA +
Sbjct: 489 SLSLKPYQKVGLNWLALVHK---HGLNGILADEMGLGKTIQAIAFL 531
Score = 75 (31.5 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL------AKYDVVLTTYS 441
L+V PAS + W RE+ P +L+VL Y+G + + Y+V++TTY+
Sbjct: 544 LIVVPASTIDNWLREVNLWCP---SLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYN 600
Score = 47 (21.6 bits), Expect = 5.9e-09, Sum P(3) = 5.9e-09
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 434 DVVLTTYSIVTN--EVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKK 480
DV + S VTN EV + + + K + + + NKKRKK
Sbjct: 293 DVQCASQSEVTNGKEVARNQNYSKNATKIKMKQKISVKPQNGFNKKRKK 341
>RGD|1309640 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1`" species:10116 "Rattus norvegicus" [GO:0000018
"regulation of DNA recombination" evidence=IEA;ISO] [GO:0000729
"DNA double-strand break processing" evidence=ISO;ISS] [GO:0000792
"heterochromatin" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0035861 "site of double-strand break"
evidence=ISO;ISS] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO;ISS] [GO:0043596 "nuclear replication fork"
evidence=IEA;ISO] [GO:0051304 "chromosome separation"
evidence=ISO;ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISO;ISS] [GO:0070933 "histone H4 deacetylation"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 RGD:1309640 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000729 GO:GO:0000018 GO:GO:0035861 KO:K14439
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ CTD:56916
OrthoDB:EOG4RV2QW EMBL:AABR03032021 IPI:IPI00765483
RefSeq:NP_001101334.2 UniGene:Rn.7758 ProteinModelPortal:D3Z9Z9
Ensembl:ENSRNOT00000008585 GeneID:312398 KEGG:rno:312398
UCSC:RGD:1309640 Uniprot:D3Z9Z9
Length = 1024
Score = 120 (47.3 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
Identities = 42/180 (23%), Positives = 88/180 (48%)
Query: 516 VLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYA----- 570
+ DE +KN + + ++ A+ R L+GTP+QN++ +L S F+ ++
Sbjct: 624 IFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 683
Query: 571 VYKSFYSTIKIPISRNSLHGYKKL---QAVLRAIMLRRTKGTFIDGQPIINL-PPKTISL 626
+ + F S K P S++ +++ + +++ +LRR K + ++ L PPK +
Sbjct: 684 IRRMFSSKTK-PADEQSIYEKERIAHAKQIIKPFILRRVK------EEVLKLLPPKKDQI 736
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEY 686
S+++ Y L + LKK + +N + ++++LR+ +HPLL ++Y
Sbjct: 737 ELCAMSEKQEQLYSGL-FNRLKK-----SINNLEKN-TEMCNVMMQLRKMANHPLLHRQY 789
Score = 105 (42.0 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++FSQ+T MLD++E L H +Y RLDG + R + +FNTD ++
Sbjct: 872 VLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDI 920
Score = 92 (37.4 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S++L +QK+ L W+ H L GILAD+ GLGKTI IA +
Sbjct: 492 SLSLKPYQKVGLNWLALVHK---HGLNGILADEMGLGKTIQAIAFL 534
Score = 74 (31.1 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL------AKYDVVLTTYS 441
L+V PAS + W RE+ P L+VL Y+G + + Y+V++TTY+
Sbjct: 547 LIVVPASTIDNWLREVNLWCP---TLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYN 603
Score = 52 (23.4 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 434 DVVLTTYSIVTN--EVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKK 480
DV + S VTN EV + + + A K + + + NKKRKK
Sbjct: 296 DVQCASQSEVTNGKEVARNQNYSKNAAKIKMKQKISMKPQNGFNKKRKK 344
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 120 (47.3 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
Identities = 42/179 (23%), Positives = 85/179 (47%)
Query: 516 VLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYA----- 570
+ DE +KN + + ++ A R L+GTP+QN++ +L S F+ ++
Sbjct: 628 IFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 687
Query: 571 VYKSFYSTIKIPISRNSLHGYKKL---QAVLRAIMLRRTKGTFIDGQPIINLPPKTISLT 627
+ + F S K P S++ +++ + +++ +LRR K + LPPK +
Sbjct: 688 IRRMFSSKTK-PADEQSIYEKERIAHAKQIIKPFILRRVKEEVLK-----QLPPKKDRIE 741
Query: 628 KVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEY 686
S+++ Y L + LKK + +N + ++++LR+ +HPLL ++Y
Sbjct: 742 LCAMSEKQEQLYMNL-FNRLKK-----SINNMEKN-TEMCNVMMQLRKMANHPLLHRQY 793
Score = 105 (42.0 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++FSQ+T MLD++E L H +Y RLDG + R + +FNTD ++
Sbjct: 876 VLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDI 924
Score = 92 (37.4 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S++L +QK+ L W+ H L GILAD+ GLGKTI IA +
Sbjct: 496 SLSLKPYQKVGLNWLALVHK---HGLNGILADEMGLGKTIQAIAFL 538
Score = 74 (31.1 bits), Expect = 1.2e-16, Sum P(4) = 1.2e-16
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL------AKYDVVLTTYS 441
L+V PAS + W RE+ P L VL Y+G + + +Y+V++TTY+
Sbjct: 551 LIVVPASTIDNWLREVNLWCP---TLKVLCYYGSQEERKQIRYNIHSRYEEYNVIVTTYN 607
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 148 (57.2 bits), Expect = 1.2e-16, Sum P(5) = 1.2e-16
Identities = 48/187 (25%), Positives = 86/187 (45%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK- 565
L + W ++LDEA IKN R+Q +A + R + R L+GTP+QN++ +L+S FL
Sbjct: 942 LKRRSWHYMILDEAHNIKNFRSQRWQALLTFRTRARLLLTGTPLQNNLTELWSLLFFLMP 1001
Query: 566 -------YDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIIN 618
+ +A ++F + P+ + HG + + + ++ + T + +P I
Sbjct: 1002 TDGDEAGIEGFADLRNFSEWFRRPVEQILEHGRETMDDEAKQVVTKLH--TVL--RPYI- 1056
Query: 619 LPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQ-----NYANILLMLLRL 673
L + K K E Y +L + F + NY +I+ L++L
Sbjct: 1057 LRRLKADVEKQMPGKYEHVVYCRLSKRQRYLYDGFMSRAQTKETLASGNYLSIINCLMQL 1116
Query: 674 RQACDHP 680
R+ C+HP
Sbjct: 1117 RKVCNHP 1123
Score = 105 (42.0 bits), Expect = 1.2e-16, Sum P(5) = 1.2e-16
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
G ++++F+Q T+MLD++E LN H +Y RLDGT + R FN D +
Sbjct: 1388 GGHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGTTKVEQRQILTDRFNNDNRI 1441
Score = 87 (35.7 bits), Expect = 1.2e-16, Sum P(5) = 1.2e-16
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 260 PKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
P ++ +P LL L ++Q L W+ S H + GILAD+ GLGKTI IAL+
Sbjct: 811 PGLKTPIPH-LLRGTLREYQHFGLDWLAG--LYSNH-INGILADEMGLGKTIQTIALL 864
Score = 57 (25.1 bits), Expect = 1.2e-16, Sum P(5) = 1.2e-16
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-----VELAKYDVVLTTYSI 442
LVV P SV+ W E + P ++ Y+G + ++ ++V++T+Y +
Sbjct: 878 LVVVPTSVILNWEMEFKKWCP---GFKIMTYYGNQEERRQKRRGWMDDNSWNVLITSYQL 934
Query: 443 VTNE 446
V +
Sbjct: 935 VLQD 938
Score = 45 (20.9 bits), Expect = 1.2e-16, Sum P(5) = 1.2e-16
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 670 LLRLRQACDHPLLVKEYDFDSVGKISGE-MAKRLPRD 705
L+R R HPL + DF ++ IS E +++RL D
Sbjct: 1151 LVRRRLLYQHPLEKLDLDFLNLVPISREDISRRLADD 1187
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 148 (57.2 bits), Expect = 1.3e-16, Sum P(4) = 1.3e-16
Identities = 47/180 (26%), Positives = 81/180 (45%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
+++ W V+LDE I+N + AC R R LSG+P+QN++ +L+S F F+
Sbjct: 624 ISRHDWHYVILDEGHKIRNPNAAITLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFP 683
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQ---AVLRAIMLRRTKGTFIDGQPIINLPPKT 623
F +PI+ +Q A A +LR T ++ + ++
Sbjct: 684 GKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVK--- 740
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQ---NYANILLMLLRLRQACDHP 680
+SL+ D K E + +L + K ++ F D+ V + I L+ LR+ C+HP
Sbjct: 741 MSLSLPD--KNEQVLFCRLTDEQHKVYQNFIDSKEVYRILNGEMQIFSGLVALRKICNHP 798
Score = 99 (39.9 bits), Expect = 1.3e-16, Sum P(4) = 1.3e-16
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 269 GLLSVNLLKHQKIALAWMLQKETRSLHC--LGGILADDQGLGKTISIIALI 317
G L L K+Q+ + W+ + LHC GGIL D+ GLGKTI IIA +
Sbjct: 490 GFLFKKLFKYQQTGVRWLWE-----LHCQQAGGILGDEMGLGKTIQIIAFL 535
Score = 78 (32.5 bits), Expect = 1.3e-16, Sum P(4) = 1.3e-16
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++FSQ +MLD++E L Y ++DGT ++ +R + +N D +
Sbjct: 848 LLFSQSRQMLDILEVFLRAQKYSYLKMDGTTTIASRQPLITRYNEDASI 896
Score = 71 (30.1 bits), Expect = 1.3e-16, Sum P(4) = 1.3e-16
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK-----YDVVLTTYS 441
T++VCP +V+ QW +E P +++ GS T +L + + +++T+YS
Sbjct: 558 TIIVCPTTVMHQWVKEFHTWWPPFRV--AILHETGSFTHKKEKLVRDIAHCHGILITSYS 615
Query: 442 IV 443
+
Sbjct: 616 YI 617
>UNIPROTKB|I3L592 [details] [associations]
symbol:LOC100623372 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 Pfam:PF00176
GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104545
Ensembl:ENSSSCT00000023786 Uniprot:I3L592
Length = 562
Score = 147 (56.8 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 25/62 (40%), Positives = 43/62 (69%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNE 446
TL++CPAS++ W E++ +V + L V +YHG +R ++ L+ YD+V+TTYS++ E
Sbjct: 472 TLIICPASLIHHWKNEVQKRVCNNE-LRVYLYHGPNRDQNAKVLSMYDIVITTYSLLAKE 530
Query: 447 VP 448
+P
Sbjct: 531 IP 532
Score = 144 (55.7 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 38/76 (50%), Positives = 49/76 (64%)
Query: 253 ALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTIS 312
+LE A P GL V LL HQK ALAW+L +E++ GGILADD GLGKT++
Sbjct: 377 SLESRPDETAVAEDPAGL-KVPLLLHQKQALAWLLWRESQKPP--GGILADDMGLGKTLT 433
Query: 313 IIALIQMQRSLQSKSK 328
+IALI Q++ Q K+K
Sbjct: 434 MIALILTQKN-QEKNK 448
>UNIPROTKB|F1NSG3 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008015 "blood circulation" evidence=IEA] [GO:0021545 "cranial
nerve development" evidence=IEA] [GO:0030217 "T cell
differentiation" evidence=IEA] [GO:0030540 "female genitalia
development" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] [GO:0043584 "nose
development" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0050890 "cognition" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0060041 "retina development
in camera-type eye" evidence=IEA] [GO:0060123 "regulation of growth
hormone secretion" evidence=IEA] [GO:0060324 "face development"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003007 "heart morphogenesis" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0040018 GO:GO:0003682
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 IPI:IPI00590082
OMA:TFGVIFD GO:GO:0060123 GeneTree:ENSGT00560000077077
EMBL:AADN02022009 EMBL:AADN02022010 Ensembl:ENSGALT00000024950
ArrayExpress:F1NSG3 Uniprot:F1NSG3
Length = 2248
Score = 202 (76.2 bits), Expect = 1.5e-16, Sum P(5) = 1.5e-16
Identities = 52/180 (28%), Positives = 93/180 (51%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L + W VV+DEA +KN ++ + + + L+GTP+QN++++L+S F
Sbjct: 329 CPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHF 388
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + +F + + +KLQA+L+ +MLRR K D + NL PK
Sbjct: 389 LEPGRFPSETTFMQEFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--NLAPKE 440
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K AF G N N+L ++ LR+ C+HP L+
Sbjct: 441 ETIIEVELTNIQKKYYRAI----LEKNFAFLSKGGGQANVPNLLNTMMELRKCCNHPYLI 496
Score = 75 (31.5 bits), Expect = 1.5e-16, Sum P(5) = 1.5e-16
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G + ++FSQ R LD++E+ L Q Y R+DG + R A+ F+
Sbjct: 543 GGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFS 591
Score = 63 (27.2 bits), Expect = 1.5e-16, Sum P(5) = 1.5e-16
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L ++Q + W+L + +C ILAD+ GLGKTI I +
Sbjct: 206 LREYQLEGVNWLLFNWYNTRNC---ILADEMGLGKTIQSITFL 245
Score = 63 (27.2 bits), Expect = 1.5e-16, Sum P(5) = 1.5e-16
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430
LV+ P S + W RE L+V++YHG ++ ++L
Sbjct: 258 LVIAPLSTIPNWEREFRTWTE----LNVVVYHGSQASRRTIQL 296
Score = 41 (19.5 bits), Expect = 1.5e-16, Sum P(5) = 1.5e-16
Identities = 11/52 (21%), Positives = 25/52 (48%)
Query: 90 DHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTL 141
+ ++S+ +ADD+ + Q+ A+ EKI S +++K+ +
Sbjct: 2 EFKISDEEADDADAAGRDSPSNTSQSEQQESADAEGPVVEKIMSSRSVKKKM 53
>FB|FBgn0032157 [details] [associations]
symbol:Etl1 "Etl1 homologue" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0003677
GO:GO:0006281 GO:GO:0016568 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 OMA:KEERYMA EMBL:AY060597
RefSeq:NP_001033889.1 RefSeq:NP_001033890.1 RefSeq:NP_609320.2
UniGene:Dm.3953 ProteinModelPortal:Q9VL72 SMR:Q9VL72 IntAct:Q9VL72
STRING:Q9VL72 PRIDE:Q9VL72 EnsemblMetazoa:FBtr0079901 GeneID:34311
KEGG:dme:Dmel_CG5899 UCSC:CG5899-RA FlyBase:FBgn0032157
InParanoid:Q9VL72 PhylomeDB:Q9VL72 GenomeRNAi:34311 NextBio:787873
Bgee:Q9VL72 Uniprot:Q9VL72
Length = 844
Score = 133 (51.9 bits), Expect = 1.6e-16, Sum P(4) = 1.6e-16
Identities = 53/198 (26%), Positives = 97/198 (48%)
Query: 515 VVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFL--KYDPYAV- 571
V+ DEA +KN TQ ++ A+ R L+GTP+QN++ +L S F+ K+ ++
Sbjct: 419 VIFDEAHMLKNMTTQRYANLITINARMRILLTGTPLQNNLLELISLLCFVMPKFFAKSIE 478
Query: 572 -YKSFYSTI-KIPISRNSLHGYKKLQA-----VLRAIMLRRTKGTFIDGQPIINLPPKTI 624
KS ++ K ++ + +++ Q +++ +LRR K + NLP K
Sbjct: 479 DIKSLFAKKGKSDGDQDEVSQFQETQIQRAKRIMKPFVLRRLKKDVLK-----NLPKKLS 533
Query: 625 SLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK 684
+ KV S ++ +Y +L D K + + A I +M+ +R+ +HPLL++
Sbjct: 534 LVEKVPMSSQQKIYYHELV-DYYSNNKGEVCSSSER---AGIAIMM-EMRRIANHPLLMR 588
Query: 685 EYDFDSVGKISGEMAKRL 702
Y D+ + G +KRL
Sbjct: 589 HYFTDA--NLRG-FSKRL 603
Score = 91 (37.1 bits), Expect = 1.6e-16, Sum P(4) = 1.6e-16
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 846 KSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
K EG + ++FSQ+T MLD+VE L + RLDG ++ R + DFN D +
Sbjct: 663 KLKAEGH-RVLLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAVNVRQDLITDFNGDDSI 720
Score = 86 (35.3 bits), Expect = 1.6e-16, Sum P(4) = 1.6e-16
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 257 LNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIAL 316
+ QPK+ L GL L +Q I L W+ + ++ GILAD+ GLGKTI +IA
Sbjct: 277 VEQPKL---LSSGL---QLADYQIIGLNWLTVMHKQEMN---GILADEMGLGKTIQVIAF 327
Query: 317 I 317
+
Sbjct: 328 L 328
Score = 75 (31.5 bits), Expect = 1.6e-16, Sum P(4) = 1.6e-16
Identities = 26/73 (35%), Positives = 35/73 (47%)
Query: 385 AGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS--RTKDPVELAK-----YDVVL 437
A L+V P+S L W E+ P+ L V YHG R + AK +DV+L
Sbjct: 339 AAHLIVVPSSTLDNWEAEISRWCPE---LVVEKYHGSQDERRRMRGRFAKDGFTGFDVLL 395
Query: 438 TTYSIVTNEVPKQ 450
TTY IV P++
Sbjct: 396 TTYHIV-GSTPEE 407
Score = 40 (19.1 bits), Expect = 0.00097, Sum P(3) = 0.00097
Identities = 18/72 (25%), Positives = 32/72 (44%)
Query: 604 RRTKGTFI-DGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQN 662
RR +G F DG ++ T + V + EE ++ + D + +A Q
Sbjct: 377 RRMRGRFAKDGFTGFDVLLTTYHI--VGSTPEERKMFRVCKLDYVIFDEAHMLKNMTTQR 434
Query: 663 YANILLMLLRLR 674
YAN++ + R+R
Sbjct: 435 YANLITINARMR 446
>ZFIN|ZDB-GENE-030131-6320 [details] [associations]
symbol:chd8 "chromodomain helicase DNA binding
protein 8" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0071339 "MLL1 complex" evidence=ISS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
ZFIN:ZDB-GENE-030131-6320 GO:GO:0005524 GO:GO:0006355 GO:GO:0016055
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 EMBL:AL928674 IPI:IPI00919855
UniGene:Dr.81397 PRIDE:B0R0I6 HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC
Uniprot:B0R0I6
Length = 2511
Score = 208 (78.3 bits), Expect = 1.6e-16, Sum P(4) = 1.6e-16
Identities = 58/210 (27%), Positives = 107/210 (50%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L ++ W VV+DEA +KN ++ + L + + L+GTP+QN++++L+S F
Sbjct: 970 CPELREISWRCVVIDEAHRLKNRNCKLLDSLKMLEIEHKVLLTGTPLQNTVEELFSLLHF 1029
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L +P A + S ++ + +KLQ++L+ +MLRR K D + NL PK
Sbjct: 1030 L--EP-AQFPSEIEFLREFGDLKTEEQVQKLQSILKPMMLRRLKE---DVEK--NLAPKQ 1081
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + + F + T N N N+L ++ LR+ C+HP L+
Sbjct: 1082 ETIIEVELTDVQKKYYRAILE---RNFSFLSMGATQNSNVPNLLNTMMELRKCCNHPYLI 1138
Query: 684 KEYDFDSVGKISGEMAKRLPRDMLIDLLSR 713
+ V ++ E+ L D + L R
Sbjct: 1139 TGAEEKIVSELR-EVYDPLAPDFHLQALVR 1167
Score = 71 (30.1 bits), Expect = 1.6e-16, Sum P(4) = 1.6e-16
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G K ++FSQ R LD++E+ L Y R+DG + R A+ F+
Sbjct: 1185 GGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFS 1233
Score = 69 (29.3 bits), Expect = 1.6e-16, Sum P(4) = 1.6e-16
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L ++Q + W+L +C ILAD+ GLGKTI IAL+
Sbjct: 847 LREYQLEGVNWLLFNWYNRQNC---ILADEMGLGKTIQSIALL 886
Score = 54 (24.1 bits), Expect = 1.6e-16, Sum P(4) = 1.6e-16
Identities = 13/78 (16%), Positives = 35/78 (44%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----------------LA 431
+++ P S + W RE + ++ ++YHG ++ ++
Sbjct: 899 MIIAPLSTITNWEREFSNWTD----MNAIVYHGSLASRQMIQQYEMYCKDDKGHLIPGAY 954
Query: 432 KYDVVLTTYSIVTNEVPK 449
K+D ++TT+ ++ ++ P+
Sbjct: 955 KFDALITTFEMILSDCPE 972
Score = 39 (18.8 bits), Expect = 9.2e-13, Sum P(3) = 9.2e-13
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 412 ALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEAD 459
A + +I GGS++K +L T ++V + + PS D + D
Sbjct: 547 AKTPVIPGGGSKSKSKTKL-------NTITLVGKKRKRNPSSDHSDVD 587
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 181 (68.8 bits), Expect = 1.9e-16, Sum P(4) = 1.9e-16
Identities = 55/179 (30%), Positives = 93/179 (51%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +V+DEA IKN +++++ ++ R L+GTP+QN++ +L++ FL D
Sbjct: 314 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 373
Query: 569 YAVYKSFYSTIKIPISRNSLHGYK---KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+ F S ++N L K +L AVL+ +LRR K T ++ +LPPK
Sbjct: 374 FNSADDFDSWFD---TKNCLGDQKLVERLHAVLKPFLLRRIK-TDVEK----SLPPKKEI 425
Query: 626 LTKVDFSK--EEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ SK EW +Y K+ +K AG +++ +L +L++LR+ C+HP L
Sbjct: 426 KVYLGLSKMQREW-WYTKI---LMKDIDVLNSAGKMDK--MRLLNILMQLRKCCNHPYL 478
Score = 74 (31.1 bits), Expect = 1.9e-16, Sum P(4) = 1.9e-16
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDR--AVKDFN 899
++FSQ TR+LD++E+ +Y RLDG R++ A++ FN
Sbjct: 519 LIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREKKEAIEAFN 564
Score = 70 (29.7 bits), Expect = 1.9e-16, Sum P(4) = 1.9e-16
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ IAL+
Sbjct: 195 LRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 234
Score = 61 (26.5 bits), Expect = 1.9e-16, Sum P(4) = 1.9e-16
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRT---KDPVELAKYDVVLTTYSI 442
+V+ P S L W E + VP +L V+ + G +R +D + ++DV +T+Y +
Sbjct: 248 MVLVPKSTLYNWMNEFKRWVP---SLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 304
Query: 443 VTNE 446
V E
Sbjct: 305 VIKE 308
>ZFIN|ZDB-GENE-040426-892 [details] [associations]
symbol:chd1l "chromodomain helicase DNA binding
protein 1-like" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR001357
ZFIN:ZDB-GENE-040426-892 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 GO:GO:0004386 SUPFAM:SSF52113 PROSITE:PS50172
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154 CTD:9557
HOGENOM:HOG000030789 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV
EMBL:BC050498 IPI:IPI00482841 RefSeq:NP_956607.1 UniGene:Dr.84280
ProteinModelPortal:Q7ZU90 PRIDE:Q7ZU90 GeneID:393283
KEGG:dre:393283 InParanoid:Q7ZU90 NextBio:20814340
ArrayExpress:Q7ZU90 Uniprot:Q7ZU90
Length = 1026
Score = 142 (55.0 bits), Expect = 2.2e-16, Sum P(4) = 2.2e-16
Identities = 57/197 (28%), Positives = 91/197 (46%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK---YDP 568
W +V+DEA +KN + + + R L+GTPIQN++ ++YS F++ + P
Sbjct: 157 WKILVVDEAHRLKNQESLLHQTLKEFTVGFRVLLTGTPIQNNLQEVYSLLTFIQPSVFLP 216
Query: 569 YAV--YKSFYSTIKI-PISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
AV + + Y+ I+ P + LH VL+ +LRR K + LP KT
Sbjct: 217 EAVEDFVNAYADIQTEPALVDELH------QVLQPFLLRRVKA-----EVAAELPKKTEL 265
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKE 685
+ S + +YK + L F+ D T + +L +L++LR+ DHP L
Sbjct: 266 VVFHGLSALQKRYYKAILMRDLDAFRT--DQSTKTR----LLNVLMQLRKCVDHPYL--- 316
Query: 686 YDFDSVGKISGEMAKRL 702
FD V EM + L
Sbjct: 317 --FDGVEPEPFEMGEHL 331
Score = 100 (40.3 bits), Expect = 2.2e-16, Sum P(4) = 2.2e-16
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 850 EGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT 900
EG ++FSQ TRMLD++++ L Y RLDG++ R+ A+K+F+T
Sbjct: 350 EGGHHVLLFSQMTRMLDILQDYLEYRGYSYERLDGSVRGEERNLAIKNFST 400
Score = 82 (33.9 bits), Expect = 2.2e-16, Sum P(4) = 2.2e-16
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL-----AKYDVVLTTYSI 442
LV+CP +VL W +ELE P +LSV+ Y G + ++ ++ V+LTTY +
Sbjct: 88 LVLCPLAVLENWRQELERFCP---SLSVICYTGDKEKRAELQQNLKSDPRFHVLLTTYEM 144
Score = 63 (27.2 bits), Expect = 2.2e-16, Sum P(4) = 2.2e-16
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 269 GLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQR-SLQSKS 327
GL +++L +Q + W+ C IL D+ GLGKT I+L+ R SL+
Sbjct: 29 GLGAIHLRPYQLDGVKWLSLCMKNQQGC---ILGDEMGLGKTCQTISLLAYARGSLKMNG 85
Query: 328 KTEVL 332
VL
Sbjct: 86 PFLVL 90
>UNIPROTKB|E1BDZ3 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:DAAA02046444
IPI:IPI00705152 Ensembl:ENSBTAT00000002955 Uniprot:E1BDZ3
Length = 2900
Score = 206 (77.6 bits), Expect = 2.2e-16, Sum P(5) = 2.2e-16
Identities = 51/182 (28%), Positives = 95/182 (52%)
Query: 503 GCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFR 562
GCG L + W V++DEA +KN ++ + + + L+GTP+QN++++L+S
Sbjct: 983 GCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLH 1042
Query: 563 FLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPK 622
FL+ + +F + + +KLQA+L+ +MLRR K D + L PK
Sbjct: 1043 FLEPLRFPSESTFMQEFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--KLAPK 1094
Query: 623 TISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
++ +V+ + + +Y+ + L+K +F G N N++ ++ LR+ C+HP L
Sbjct: 1095 EETIIEVELTNIQKKYYRAI----LEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYL 1150
Query: 683 VK 684
+K
Sbjct: 1151 IK 1152
Score = 71 (30.1 bits), Expect = 2.2e-16, Sum P(5) = 2.2e-16
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G K ++FSQ R LD++E+ L Y R+DG + R A+ F+
Sbjct: 1198 GGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFS 1246
Score = 64 (27.6 bits), Expect = 2.2e-16, Sum P(5) = 2.2e-16
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L ++Q L W+L +C ILAD+ GLGKTI I +
Sbjct: 861 LREYQLEGLNWLLFNWYNRRNC---ILADEMGLGKTIQSITFL 900
Score = 54 (24.1 bits), Expect = 2.2e-16, Sum P(5) = 2.2e-16
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE 429
L++ P S + W RE ++V++YHG ++ ++
Sbjct: 913 LIIAPLSTIANWEREFRTWTD----INVVVYHGSLISRQMIQ 950
Score = 53 (23.7 bits), Expect = 2.2e-16, Sum P(5) = 2.2e-16
Identities = 34/162 (20%), Positives = 55/162 (33%)
Query: 88 SDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQP 147
S+ Q S+ + S+++S N + + P N +D+ S+ + R +
Sbjct: 267 SNSQQFSSHYSFSSNHVSPNSLLQPSAVLAPNHTNQTLSDFTG-SNSFSPHRGIKQESTQ 325
Query: 148 HSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYEGNR 207
H LN + + N GN P +N + + D + G
Sbjct: 326 HMLNPNTSLNSNNFQMLHSSHPQGNYNSKLSPVHMNFPDPVDSGTQMGHFSDHVETNGFS 385
Query: 208 ILPSSLMHGKSVSMTQFGG--PSDLAYRS--GSADERAVGGD 245
L +L+H F G P DL DE A G D
Sbjct: 386 SLEENLLHQVESQTEPFTGLDPEDLLQEGLLPQFDESAFGQD 427
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 108 (43.1 bits), Expect = 3.5e-16, Sum P(5) = 3.5e-16
Identities = 42/179 (23%), Positives = 83/179 (46%)
Query: 516 VLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYA----- 570
+ DE +KN + + ++ A R L+GTP+QN++ +L S F+ ++
Sbjct: 626 IFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 685
Query: 571 VYKSFYSTIKIPISRNSLHGYKKL---QAVLRAIMLRRTKGTFIDGQPIINLPPKTISLT 627
+ + F S K S++ +++ + +++ +LRR K + LPPK +
Sbjct: 686 IRRMFSSKTK-SADEQSIYEKERIAHAKQIIKPFILRRVKEEVLK-----QLPPKKDQIE 739
Query: 628 KVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEY 686
S+++ Y L + LKK + T N+++ +LR+ +HPLL ++Y
Sbjct: 740 LCAMSEKQEQLYLGL-FNRLKKSINNIEKST---EMCNVMM---QLRKMANHPLLHRQY 791
Score = 105 (42.0 bits), Expect = 3.5e-16, Sum P(5) = 3.5e-16
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++FSQ+T MLD++E L H +Y RLDG + R + +FNTD ++
Sbjct: 874 VLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDI 922
Score = 92 (37.4 bits), Expect = 3.5e-16, Sum P(5) = 3.5e-16
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S++L +QK+ L W+ H L GILAD+ GLGKTI IA +
Sbjct: 494 SLSLKPYQKVGLNWLALVHK---HGLNGILADEMGLGKTIQAIAFL 536
Score = 75 (31.5 bits), Expect = 3.5e-16, Sum P(5) = 3.5e-16
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV------ELAKYDVVLTTYS 441
L+V PAS + W RE+ P L VL Y+G + + + +Y+V++TTY+
Sbjct: 549 LIVVPASTIDNWLREVNLWCP---TLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYN 605
Score = 48 (22.0 bits), Expect = 3.5e-16, Sum P(5) = 3.5e-16
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 112 QLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLNTKSKSSVEN 160
Q + N + A+ S +Y K +++ LK+ PQ + N K K +V N
Sbjct: 303 QSEFPNGKEASSRSQNYPKNAAKTKLKQKCSMKPQ-NGFNKKRKKNVFN 350
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 108 (43.1 bits), Expect = 3.5e-16, Sum P(5) = 3.5e-16
Identities = 42/179 (23%), Positives = 83/179 (46%)
Query: 516 VLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYA----- 570
+ DE +KN + + ++ A R L+GTP+QN++ +L S F+ ++
Sbjct: 626 IFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 685
Query: 571 VYKSFYSTIKIPISRNSLHGYKKL---QAVLRAIMLRRTKGTFIDGQPIINLPPKTISLT 627
+ + F S K S++ +++ + +++ +LRR K + LPPK +
Sbjct: 686 IRRMFSSKTK-SADEQSIYEKERIAHAKQIIKPFILRRVKEEVLK-----QLPPKKDQIE 739
Query: 628 KVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEY 686
S+++ Y L + LKK + T N+++ +LR+ +HPLL ++Y
Sbjct: 740 LCAMSEKQEQLYLGL-FNRLKKSINNIEKST---EMCNVMM---QLRKMANHPLLHRQY 791
Score = 105 (42.0 bits), Expect = 3.5e-16, Sum P(5) = 3.5e-16
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++FSQ+T MLD++E L H +Y RLDG + R + +FNTD ++
Sbjct: 874 VLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDI 922
Score = 92 (37.4 bits), Expect = 3.5e-16, Sum P(5) = 3.5e-16
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S++L +QK+ L W+ H L GILAD+ GLGKTI IA +
Sbjct: 494 SLSLKPYQKVGLNWLALVHK---HGLNGILADEMGLGKTIQAIAFL 536
Score = 75 (31.5 bits), Expect = 3.5e-16, Sum P(5) = 3.5e-16
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV------ELAKYDVVLTTYS 441
L+V PAS + W RE+ P L VL Y+G + + + +Y+V++TTY+
Sbjct: 549 LIVVPASTIDNWLREVNLWCP---TLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYN 605
Score = 48 (22.0 bits), Expect = 3.5e-16, Sum P(5) = 3.5e-16
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 112 QLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLNTKSKSSVEN 160
Q + N + A+ S +Y K +++ LK+ PQ + N K K +V N
Sbjct: 303 QSEFPNGKEASSRSQNYPKNAAKTKLKQKCSMKPQ-NGFNKKRKKNVFN 350
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 108 (43.1 bits), Expect = 3.5e-16, Sum P(5) = 3.5e-16
Identities = 42/179 (23%), Positives = 83/179 (46%)
Query: 516 VLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYA----- 570
+ DE +KN + + ++ A R L+GTP+QN++ +L S F+ ++
Sbjct: 626 IFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 685
Query: 571 VYKSFYSTIKIPISRNSLHGYKKL---QAVLRAIMLRRTKGTFIDGQPIINLPPKTISLT 627
+ + F S K S++ +++ + +++ +LRR K + LPPK +
Sbjct: 686 IRRMFSSKTK-SADEQSIYEKERIAHAKQIIKPFILRRVKEEVLK-----QLPPKKDQIE 739
Query: 628 KVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEY 686
S+++ Y L + LKK + T N+++ +LR+ +HPLL ++Y
Sbjct: 740 LCAMSEKQEQLYLGL-FNRLKKSINNIEKST---EMCNVMM---QLRKMANHPLLHRQY 791
Score = 105 (42.0 bits), Expect = 3.5e-16, Sum P(5) = 3.5e-16
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++FSQ+T MLD++E L H +Y RLDG + R + +FNTD ++
Sbjct: 874 VLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDI 922
Score = 92 (37.4 bits), Expect = 3.5e-16, Sum P(5) = 3.5e-16
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S++L +QK+ L W+ H L GILAD+ GLGKTI IA +
Sbjct: 494 SLSLKPYQKVGLNWLALVHK---HGLNGILADEMGLGKTIQAIAFL 536
Score = 75 (31.5 bits), Expect = 3.5e-16, Sum P(5) = 3.5e-16
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV------ELAKYDVVLTTYS 441
L+V PAS + W RE+ P L VL Y+G + + + +Y+V++TTY+
Sbjct: 549 LIVVPASTIDNWLREVNLWCP---TLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYN 605
Score = 48 (22.0 bits), Expect = 3.5e-16, Sum P(5) = 3.5e-16
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 112 QLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLNTKSKSSVEN 160
Q + N + A+ S +Y K +++ LK+ PQ + N K K +V N
Sbjct: 303 QSEFPNGKEASSRSQNYPKNAAKTKLKQKCSMKPQ-NGFNKKRKKNVFN 350
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 152 (58.6 bits), Expect = 3.6e-16, Sum P(4) = 3.6e-16
Identities = 47/177 (26%), Positives = 86/177 (48%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L ++ W +V+DEA IKN ++ +++ +K R ++GTP+QN++ +L++ FL
Sbjct: 301 LKRLAWQYIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELWALLNFLLP 360
Query: 567 DPYAVYKSFYSTIKIPISRNSLH-GYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
D + + F + S ++L +VL +LRR K D + +L PK +
Sbjct: 361 DIFGDSELFDEWFEQNNSEQDQEIVIQQLHSVLNPFLLRRVKA---DVEK--SLLPKIET 415
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
V + + +YK L K A A + +L ++++LR+ C+HP L
Sbjct: 416 NVYVGMTDMQIQWYKSLLE---KDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYL 469
Score = 83 (34.3 bits), Expect = 3.6e-16, Sum P(4) = 3.6e-16
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVEL----AKYDVVLTTYSI 442
L++ P S L W RE P+ ++VL+ HG T+ D V A++DV++T+Y +
Sbjct: 237 LIIVPKSTLDNWRREFLKWTPN---VNVLVLHGDKDTRADIVRNIILEARFDVLITSYEM 293
Query: 443 VTNE 446
V E
Sbjct: 294 VIRE 297
Score = 78 (32.5 bits), Expect = 3.6e-16, Sum P(4) = 3.6e-16
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++FSQ +R+LD++E+ +Y R+DG+ S R A+ ++N
Sbjct: 510 LIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIEAIDEYN 553
Score = 73 (30.8 bits), Expect = 3.6e-16, Sum P(4) = 3.6e-16
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLH--CLGGILADDQGLGKTISIIALI 317
P + S L +Q L W++ SLH L GILAD+ GLGKT+ I+ +
Sbjct: 176 PSFVKSGKLRDYQVQGLNWLI-----SLHENKLSGILADEMGLGKTLQTISFL 223
Score = 58 (25.5 bits), Expect = 1.1e-14, Sum P(4) = 1.1e-14
Identities = 24/84 (28%), Positives = 39/84 (46%)
Query: 148 HSLNTKSKSSVENM--NSSQIRDTFGNAYHLA-GPSTVNSKGYIRDYYVKKNDDDIMMYE 204
H T+ + E M +I DT+ ++ PS V S G +RDY V+ + I ++E
Sbjct: 142 HHRKTEKEEDAELMADEEEEIVDTYQEDIFVSESPSFVKS-GKLRDYQVQGLNWLISLHE 200
Query: 205 G--NRILPSSLMHGKSVSMTQFGG 226
+ IL + GK++ F G
Sbjct: 201 NKLSGILADEMGLGKTLQTISFLG 224
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 141 (54.7 bits), Expect = 3.6e-16, Sum P(4) = 3.6e-16
Identities = 48/173 (27%), Positives = 78/173 (45%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYD--PY 569
W +V+DEA +KN + + L L+GTPIQNS+ +LYS F++ D P
Sbjct: 168 WAALVVDEAHRLKNQNSLLYETLTELPVGFSLLLTGTPIQNSLQELYSLLSFIEPDIFPR 227
Query: 570 AVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKV 629
K F + + + S K+L +L+ +LRR K + +LP K +
Sbjct: 228 KQVKEFVEYYQA-VEKES-EPAKELHNLLQPFLLRRVKS-----EVTADLPKKVEVVLYH 280
Query: 630 DFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
S + +YK + + L F+ + QN +L++LR+ HP L
Sbjct: 281 GMSALQRKYYKAILTKDLDAFEGGTGRKVMLQN------VLIQLRKCVAHPYL 327
Score = 85 (35.0 bits), Expect = 3.6e-16, Sum P(4) = 3.6e-16
Identities = 16/49 (32%), Positives = 32/49 (65%)
Query: 850 EGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF 898
+G + ++FSQ T++LD++++ ++ Y RLDG++ R A+K+F
Sbjct: 361 DGGHRVLLFSQMTKLLDILQDYMDYRGYSYERLDGSVRGEERHLAIKNF 409
Score = 80 (33.2 bits), Expect = 3.6e-16, Sum P(4) = 3.6e-16
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV-----ELAKYDVVLTTYS 441
+L++CP SVL W ELE P LS + Y G + + E + + V+LTTY
Sbjct: 98 SLILCPLSVLSNWKEELERFAP---GLSFVTYVGNKEERYKLQQNLKEQSHFRVLLTTYE 154
Query: 442 I 442
I
Sbjct: 155 I 155
Score = 76 (31.8 bits), Expect = 3.6e-16, Sum P(4) = 3.6e-16
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 269 GLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI-QMQRSLQSKS 327
GL + L +Q + W++Q + H G IL D+ GLGKT I+L+ + + L +K
Sbjct: 40 GLTGIKLRPYQLDGVNWLVQCY-QVQH--GCILGDEMGLGKTCQTISLLLYLTKKLTNKE 96
Query: 328 KTEVL 332
++ +L
Sbjct: 97 RSLIL 101
Score = 44 (20.5 bits), Expect = 4.6e-12, Sum P(4) = 4.6e-12
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 865 LDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
L +E L + + ++ + T+ P A KDFN
Sbjct: 818 LSALEKGLKKIYVAAKKRNATVHFPRIGYATKDFN 852
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 140 (54.3 bits), Expect = 3.8e-16, Sum P(4) = 3.8e-16
Identities = 60/211 (28%), Positives = 89/211 (42%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L W + +DEA +KN + + R A R L+GTPIQNS+ +LYS ++
Sbjct: 157 LKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSAVFRLLLTGTPIQNSLRELYSLLCVVEP 216
Query: 567 DPYA--VYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTI 624
D + + F + I + S +L +L+ +LRR K Q LP KT
Sbjct: 217 DLFCREQVEDFVQRYQ-DIEKESKSA-SELHRLLQPFLLRRVKA-----QVATELPKKTE 269
Query: 625 SLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK 684
+ S + +YK + +K AF + NIL +LR+ DHP L
Sbjct: 270 VVVYHGMSALQKKYYKAI---LMKDLDAFENETAKKVKLQNILT---QLRKCVDHPYL-- 321
Query: 685 EYDFDSVGKISGEMAKRL-PRDMLIDLLSRL 714
FD V E+ + L + LL RL
Sbjct: 322 ---FDGVEPEPFEVGEHLIEASGKLHLLDRL 349
Score = 84 (34.6 bits), Expect = 3.8e-16, Sum P(4) = 3.8e-16
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 269 GLLSVNLLKHQKIALAWMLQKETRSLHCLGG-ILADDQGLGKTISIIALI 317
GL + L +Q + W++Q HC G IL D+ GLGKT IAL+
Sbjct: 34 GLTGIRLRSYQLEGVNWLVQ----CFHCQNGCILGDEMGLGKTCQTIALL 79
Score = 81 (33.6 bits), Expect = 3.8e-16, Sum P(4) = 3.8e-16
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF 898
G + ++FSQ T MLD++++ ++ Y R+DG++ R A+K+F
Sbjct: 356 GGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNF 403
Score = 77 (32.2 bits), Expect = 3.8e-16, Sum P(4) = 3.8e-16
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-----DPVELAKYDVVLTTYSI 442
LV+CP SVL W E+E P LS + Y G + D + + + V+LTTY I
Sbjct: 93 LVLCPLSVLSNWKEEMERFAP---GLSCVTYTGDKEERARLQQDLRQESGFHVLLTTYEI 149
Score = 39 (18.8 bits), Expect = 6.0e-12, Sum P(4) = 6.0e-12
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 830 EIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCI 877
E+ DL G + SSA + ++ + V T E+++ HC+
Sbjct: 698 ELEDLEGGDESSAELAYEDLDSTSINYVSGDVTHPQAGEEDAVIVHCV 745
>UNIPROTKB|E1BPM4 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:DAAA02038386
EMBL:DAAA02038387 EMBL:DAAA02038388 IPI:IPI00697020
Ensembl:ENSBTAT00000026607 Uniprot:E1BPM4
Length = 2940
Score = 202 (76.2 bits), Expect = 4.2e-16, Sum P(4) = 4.2e-16
Identities = 52/180 (28%), Positives = 93/180 (51%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L + W VV+DEA +KN ++ + + + L+GTP+QN++++L+S F
Sbjct: 1041 CPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHF 1100
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + +F + + +KLQA+L+ +MLRR K D + NL PK
Sbjct: 1101 LEPTRFPSETTFMQEFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--NLAPKE 1152
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K AF G N N+L ++ LR+ C+HP L+
Sbjct: 1153 ETIIEVELTNIQKKYYRAI----LEKNFAFLSKGGGQANVPNLLNTMMELRKCCNHPYLI 1208
Score = 75 (31.5 bits), Expect = 4.2e-16, Sum P(4) = 4.2e-16
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G + ++FSQ R LD++E+ L Q Y R+DG + R A+ F+
Sbjct: 1255 GGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFS 1303
Score = 63 (27.2 bits), Expect = 4.2e-16, Sum P(4) = 4.2e-16
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430
LV+ P S + W RE L+V++YHG ++ ++L
Sbjct: 970 LVIAPLSTIPNWEREFRTWTE----LNVVVYHGSQASRRTIQL 1008
Score = 61 (26.5 bits), Expect = 4.2e-16, Sum P(4) = 4.2e-16
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L ++Q + W+L +C ILAD+ GLGKTI I +
Sbjct: 918 LREYQLEGVNWLLFNWYNMRNC---ILADEMGLGKTIQSITFL 957
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 174 (66.3 bits), Expect = 4.9e-16, Sum P(4) = 4.9e-16
Identities = 54/212 (25%), Positives = 107/212 (50%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W + +DEA +KN + + + ++ R ++GTP+QNS+ +L+S F+
Sbjct: 608 LGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP 667
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + ++ F + +GY+ L VL +LRR K D + +LP K +
Sbjct: 668 EKFEFWEDFEEDH----GKGRENGYQSLHKVLEPFLLRRVKK---DVEK--SLPAKVEQI 718
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK-- 684
+V+ S + +YK + + + +KA A GT + L +++ L++ C+H L+K
Sbjct: 719 LRVEMSALQKQYYKWILT---RNYKALAK-GTRGST-SGFLNIVMELKKCCNHCYLIKPP 773
Query: 685 -EYDFDSVGKISGEMAKRLPRDMLID-LLSRL 714
E + ++ +I + + + +L+D LL+RL
Sbjct: 774 EENERENGQEILLSLIRSSGKLILLDKLLTRL 805
Score = 82 (33.9 bits), Expect = 4.9e-16, Sum P(4) = 4.9e-16
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
++FSQ RMLD++ L ++RLDG++ R +A+ FN D + C L
Sbjct: 813 LIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFL 866
Score = 67 (28.6 bits), Expect = 4.9e-16, Sum P(4) = 4.9e-16
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV----------ELAKYDVVL 437
L+V P S L W RE E P+ ++V++Y G +++ + + K++ ++
Sbjct: 539 LIVVPLSTLTSWQREFEIWAPE---INVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 595
Query: 438 TTYSIVTNE 446
TTY I+ +
Sbjct: 596 TTYEILLKD 604
Score = 59 (25.8 bits), Expect = 4.9e-16, Sum P(4) = 4.9e-16
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++ L +Q L W+ +S ILAD+ GLGKTI I+ +
Sbjct: 483 NLELRDYQLEGLNWLAHSWCKSNSV---ILADEMGLGKTIQTISFL 525
>TAIR|locus:2051678 [details] [associations]
symbol:ETL1 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC005936 HOGENOM:HOG000172362
KO:K14439 EMBL:AY059857 EMBL:BT002576 IPI:IPI00520453 PIR:H84432
RefSeq:NP_178318.1 UniGene:At.13358 ProteinModelPortal:Q9ZUL5
SMR:Q9ZUL5 IntAct:Q9ZUL5 PaxDb:Q9ZUL5 PRIDE:Q9ZUL5
EnsemblPlants:AT2G02090.1 GeneID:814740 KEGG:ath:AT2G02090
TAIR:At2g02090 InParanoid:Q9ZUL5 OMA:CAKISAD PhylomeDB:Q9ZUL5
ProtClustDB:CLSN2683669 ArrayExpress:Q9ZUL5 Genevestigator:Q9ZUL5
Uniprot:Q9ZUL5
Length = 763
Score = 113 (44.8 bits), Expect = 5.3e-16, Sum P(4) = 5.3e-16
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++FSQWT MLD++E +L+ + YRRLDG+ + R V FN D+ +
Sbjct: 608 LIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTIVDTFNNDKSI 656
Score = 108 (43.1 bits), Expect = 5.3e-16, Sum P(4) = 5.3e-16
Identities = 45/202 (22%), Positives = 95/202 (47%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSL--RAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPY 569
W V++DEA +K+ + + S+ A +R L+GTP+QN + +L+S F+ D
Sbjct: 347 WSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMLPD-- 404
Query: 570 AVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKV 629
++ + +K ++ +++++L +LRR K + L PK + V
Sbjct: 405 -IFTTENVDLKKLLNAEDTELITRMKSILGPFILRRLKSDVMQ-----QLVPKIQRVEYV 458
Query: 630 DFSKEEWAFYKKLESDSLKKFKAFADAGTV--NQNYANILLMLL----------RLRQAC 677
+++ YK +++++++A + A V + N L L + R+
Sbjct: 459 LMERKQEDAYK----EAIEEYRAASQARLVKLSSKSLNSLAKALPKRQISNYFTQFRKIA 514
Query: 678 DHPLLVKE-YDFDSVGKISGEM 698
+HPLL++ Y + V +I+ ++
Sbjct: 515 NHPLLIRRIYSDEDVIRIARKL 536
Score = 94 (38.1 bits), Expect = 5.3e-16, Sum P(4) = 5.3e-16
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSR---TKDPVELAK------YDVVLT 438
LVVCPASVL W REL P + +VL YHG +R +++ L+K ++V+L
Sbjct: 267 LVVCPASVLENWERELRKWCP---SFTVLQYHGAARAAYSRELNSLSKAGKPPPFNVLLV 323
Query: 439 TYSIVTNEVPKQ 450
YS+ +Q
Sbjct: 324 CYSLFERHSEQQ 335
Score = 64 (27.6 bits), Expect = 5.3e-16, Sum P(4) = 5.3e-16
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 275 LLK-HQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQS 325
+LK +Q + + ++L + + G ILAD+ GLGKTI I + + L +
Sbjct: 212 ILKPYQLVGVNFLLLLYKKGIE--GAILADEMGLGKTIQAITYLTLLSRLNN 261
>UNIPROTKB|K7EMY3 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL031847 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AL035406
HGNC:HGNC:16816 Ensembl:ENST00000462991 Uniprot:K7EMY3
Length = 1060
Score = 183 (69.5 bits), Expect = 5.5e-16, Sum P(4) = 5.5e-16
Identities = 50/176 (28%), Positives = 91/176 (51%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W +V+DEA +KN++++ R S + + L+GTP+QN++++L+ FL
Sbjct: 219 LGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTP 278
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + + F IS+ KKL +L MLRR K N+P KT +
Sbjct: 279 ERFNNLEGFLEEFA-DISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----NMPAKTELI 330
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+V+ S+ + +YK + + + F+A G NQ ++L +++ L++ C+HP L
Sbjct: 331 VRVELSQMQKKYYKFILT---RNFEALNSKGGGNQ--VSLLNIMMDLKKCCNHPYL 381
Score = 91 (37.1 bits), Expect = 5.5e-16, Sum P(4) = 5.5e-16
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
++FSQ T+MLDL+E+ L +Y R+DG ++ R A+ FN ++ C L
Sbjct: 427 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 480
Score = 57 (25.1 bits), Expect = 5.5e-16, Sum P(4) = 5.5e-16
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 300 ILADDQGLGKTI-SIIALIQMQRSLQSK 326
ILAD+ GLGKT+ +I+ L + + SK
Sbjct: 105 ILADEMGLGKTVQTIVFLYSLYKEGHSK 132
Score = 50 (22.7 bits), Expect = 5.5e-16, Sum P(4) = 5.5e-16
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV 428
LV P S + W RE E PD V+ Y G ++ +
Sbjct: 136 LVSAPLSTIINWEREFEMWAPD---FYVVTYTGDKESRSVI 173
Score = 45 (20.9 bits), Expect = 1.8e-15, Sum P(4) = 1.8e-15
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 423 RTKDPVELAKYDVVLTTYSIVT 444
R K V++ K+ V+LT+Y ++T
Sbjct: 193 RMKKEVQI-KFHVLLTSYELIT 213
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 142 (55.0 bits), Expect = 6.0e-16, Sum P(4) = 6.0e-16
Identities = 59/211 (27%), Positives = 88/211 (41%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L W + +DEA +KN + + R R L+GTPIQNS+ +LYS ++
Sbjct: 157 LKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSVVFRLLLTGTPIQNSLQELYSLLSVVEP 216
Query: 567 DPYA--VYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTI 624
D + + F + I + S +L +LR +LRR K Q LP KT
Sbjct: 217 DLFCREQVEDFVQCYQ-DIEKESKSA-SELHRLLRPFLLRRVKA-----QVATELPKKTE 269
Query: 625 SLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK 684
+ S + +YK + +K AF + N+L +LR+ DHP L
Sbjct: 270 VVIYHGMSALQKKYYKAI---LMKDLDAFENETAKKVKLQNVLT---QLRKCVDHPYL-- 321
Query: 685 EYDFDSVGKISGEMAKRL-PRDMLIDLLSRL 714
FD V E+ + L + LL RL
Sbjct: 322 ---FDGVEPEPFEVGEHLIEASGKLHLLDRL 349
Score = 81 (33.6 bits), Expect = 6.0e-16, Sum P(4) = 6.0e-16
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF 898
G + ++FSQ T MLD++++ ++ Y R+DG++ R A+K+F
Sbjct: 356 GGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNF 403
Score = 80 (33.2 bits), Expect = 6.0e-16, Sum P(4) = 6.0e-16
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS-----RTKDPVELAKYDVVLTTYSI 442
L++CP SVL W E+E P LS + Y G R +D + + + V+LTTY I
Sbjct: 93 LILCPLSVLSNWKEEMERFAP---GLSCVTYTGDKEERARRQQDLRQESGFHVLLTTYEI 149
Score = 77 (32.2 bits), Expect = 6.0e-16, Sum P(4) = 6.0e-16
Identities = 27/81 (33%), Positives = 38/81 (46%)
Query: 243 GGDERLIYQAALEDLNQP---KV-EATLPD-GLLSVNLLKHQKIALAWMLQKETRSLHCL 297
GG R + D +P +V E L + GL + L +Q + W++Q H
Sbjct: 3 GGSPRFLQALRAGDRPEPVRTRVQEQDLQEWGLTGIRLRSYQLEGVNWLVQ----CFHGQ 58
Query: 298 GG-ILADDQGLGKTISIIALI 317
G IL D+ GLGKT IAL+
Sbjct: 59 NGCILGDEMGLGKTCQTIALL 79
>WB|WBGene00010845 [details] [associations]
symbol:M03C11.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0003677 GO:GO:0006281 GO:GO:0016568 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 EMBL:Z49128 EMBL:AL021171 PIR:T23046
RefSeq:NP_499301.2 ProteinModelPortal:G5EDG2 SMR:G5EDG2
EnsemblMetazoa:M03C11.8 GeneID:176462 KEGG:cel:CELE_M03C11.8
WormBase:M03C11.8 OMA:KEERYMA NextBio:892680 Uniprot:G5EDG2
Length = 989
Score = 135 (52.6 bits), Expect = 6.5e-16, Sum P(4) = 6.5e-16
Identities = 55/200 (27%), Positives = 102/200 (51%)
Query: 515 VVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYS--YFR----FLKY-- 566
V+ DE +KN ++ R ++ K++ L+GTP+QN++ +L S YF F KY
Sbjct: 522 VIYDEGHMLKNCDSERYRGLMKVKGKKKILLTGTPLQNNLIELISLMYFVLSKVFNKYCE 581
Query: 567 DPYAVYKSFYSTIKIPISRN-SLHGYKKLQ---AVLRAIMLRRTKGTFIDGQPIINLPPK 622
D + + F ++N +L+ +++ A+L+ +LRR K Q + +LP K
Sbjct: 582 DITHLLQHFKQLGPALDTKNKALYQQDRIEEAKAILQPYILRRLKN-----QVLGSLPSK 636
Query: 623 TISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ + +V+ K + K+L + ++ + ++G +Y + L+RLRQA +HPLL
Sbjct: 637 SEQIIEVEMKKPQ----KQLYDNIVEALQQSEESG---DSYGS----LMRLRQAANHPLL 685
Query: 683 VK-EYDFDSVGKISGEMAKR 701
+ EY + KI+ + R
Sbjct: 686 RRSEYTDQKLDKIAKMLCLR 705
Score = 99 (39.9 bits), Expect = 6.5e-16, Sum P(4) = 6.5e-16
Identities = 34/121 (28%), Positives = 60/121 (49%)
Query: 790 DSPFADKSGILDNEYISSKIRTVLDI-LHTQCELNTKCSIVEI--HDLAGSNGS-SAVHS 845
+ +ADK +++S + + DI +H CE +C+ + LA +G +
Sbjct: 706 EKAYADKKW----QHVSEDLAWLSDIKIHQLCE-RFRCTSKFLLNEQLALKSGKCEQLDV 760
Query: 846 KSP-IEGP-IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDRE 903
P I+ K ++FSQ+T MLD++E LN Y+RLDG + R + +FN ++
Sbjct: 761 MLPEIQKKGDKVLIFSQFTSMLDILEVYLNIRGYSYKRLDGQTPVLDRQEMINEFNLSKD 820
Query: 904 V 904
+
Sbjct: 821 L 821
Score = 75 (31.5 bits), Expect = 6.5e-16, Sum P(4) = 6.5e-16
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 278 HQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSL 323
+Q I + W++ + L+ IL D+ GLGKTI I+A + + +
Sbjct: 397 YQLIGVKWLIMMYNKDLNA---ILGDEMGLGKTIQIVAFLSYLKQI 439
Score = 73 (30.8 bits), Expect = 6.5e-16, Sum P(4) = 6.5e-16
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS----RTKDPVELAK--YDVVLTTYS 441
L+V P+S + W E P ++ +L Y+G + V+ K DV+LTTY+
Sbjct: 446 LIVVPSSTIENWIGEFHKWCP---SIQLLTYYGSQDERKHLRHRVKKQKDHIDVILTTYN 502
Query: 442 IVTNE 446
+VT++
Sbjct: 503 MVTSK 507
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 167 (63.8 bits), Expect = 6.6e-16, Sum P(5) = 6.6e-16
Identities = 48/184 (26%), Positives = 93/184 (50%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK---YDP 568
W ++LDEA IKN T+ SL+ ++GTP+QNS+++L+S FL +
Sbjct: 784 WKYIILDEAHNIKNFNTKRWNIILSLKRDNCLLITGTPLQNSLEELWSLLHFLMPNIFTS 843
Query: 569 YAVYKSFYST-IKIPISRNSLHGYK----KLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
+ +K ++S + + I ++ +H K +L V+R +LRR K ++ + +P K
Sbjct: 844 HLDFKEWFSDPLNLAIEKSKIHHSKELIDRLHTVIRPYILRRLKKN-VEKE----MPNKY 898
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDH-PLL 682
+ K ++ + Y + ++ K + + G NY ++ +L++LR+ C+H L
Sbjct: 899 EHIIKCKLTRRQQILYDEFINN--KNVQNTLNTG----NYIGLMNILIQLRKVCNHCDLF 952
Query: 683 VKEY 686
+Y
Sbjct: 953 TNKY 956
Score = 97 (39.2 bits), Expect = 6.6e-16, Sum P(5) = 6.6e-16
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 845 SKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
SK EG K ++F+Q+ +MLD++E LN + RLDG+ + R + V FN D+ +
Sbjct: 1778 SKCKREGN-KCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNNDKSI 1836
Score = 78 (32.5 bits), Expect = 6.6e-16, Sum P(5) = 6.6e-16
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 270 LLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++ L +Q L W+L +++ GILAD+ GLGKT+ I+L+
Sbjct: 657 IIKATLRDYQHAGLHWLLYLYKNNIN---GILADEMGLGKTLQCISLL 701
Score = 55 (24.4 bits), Expect = 6.6e-16, Sum P(5) = 6.6e-16
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS--RTKDPVELAKYD---VVLTTYSI 442
LV+ P S+L W EL+ P +L Y+G R K V D + +++YS
Sbjct: 715 LVIVPTSILINWEIELKRFCP---CFKILSYYGNQNERYKKRVGWFNKDSFHICISSYST 771
Query: 443 VTNE 446
V +
Sbjct: 772 VVKD 775
Score = 41 (19.5 bits), Expect = 6.6e-16, Sum P(5) = 6.6e-16
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 131 ISSQQALKRTLPAFPQPHSLNTKSKSSVENMNSS 164
I + L+RT A +P S N S++ N N++
Sbjct: 560 IKDEYNLRRTKIAKSKPSSDNNNSENDNNNDNNN 593
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 167 (63.8 bits), Expect = 6.6e-16, Sum P(5) = 6.6e-16
Identities = 48/184 (26%), Positives = 93/184 (50%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK---YDP 568
W ++LDEA IKN T+ SL+ ++GTP+QNS+++L+S FL +
Sbjct: 784 WKYIILDEAHNIKNFNTKRWNIILSLKRDNCLLITGTPLQNSLEELWSLLHFLMPNIFTS 843
Query: 569 YAVYKSFYST-IKIPISRNSLHGYK----KLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
+ +K ++S + + I ++ +H K +L V+R +LRR K ++ + +P K
Sbjct: 844 HLDFKEWFSDPLNLAIEKSKIHHSKELIDRLHTVIRPYILRRLKKN-VEKE----MPNKY 898
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDH-PLL 682
+ K ++ + Y + ++ K + + G NY ++ +L++LR+ C+H L
Sbjct: 899 EHIIKCKLTRRQQILYDEFINN--KNVQNTLNTG----NYIGLMNILIQLRKVCNHCDLF 952
Query: 683 VKEY 686
+Y
Sbjct: 953 TNKY 956
Score = 97 (39.2 bits), Expect = 6.6e-16, Sum P(5) = 6.6e-16
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 845 SKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
SK EG K ++F+Q+ +MLD++E LN + RLDG+ + R + V FN D+ +
Sbjct: 1778 SKCKREGN-KCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNNDKSI 1836
Score = 78 (32.5 bits), Expect = 6.6e-16, Sum P(5) = 6.6e-16
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 270 LLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++ L +Q L W+L +++ GILAD+ GLGKT+ I+L+
Sbjct: 657 IIKATLRDYQHAGLHWLLYLYKNNIN---GILADEMGLGKTLQCISLL 701
Score = 55 (24.4 bits), Expect = 6.6e-16, Sum P(5) = 6.6e-16
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS--RTKDPVELAKYD---VVLTTYSI 442
LV+ P S+L W EL+ P +L Y+G R K V D + +++YS
Sbjct: 715 LVIVPTSILINWEIELKRFCP---CFKILSYYGNQNERYKKRVGWFNKDSFHICISSYST 771
Query: 443 VTNE 446
V +
Sbjct: 772 VVKD 775
Score = 41 (19.5 bits), Expect = 6.6e-16, Sum P(5) = 6.6e-16
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 131 ISSQQALKRTLPAFPQPHSLNTKSKSSVENMNSS 164
I + L+RT A +P S N S++ N N++
Sbjct: 560 IKDEYNLRRTKIAKSKPSSDNNNSENDNNNDNNN 593
>UNIPROTKB|Q06A37 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:DQ978381 IPI:IPI00590082
RefSeq:NP_001071054.1 UniGene:Gga.20865 ProteinModelPortal:Q06A37
SMR:Q06A37 GeneID:421140 KEGG:gga:421140 CTD:55636
HOGENOM:HOG000246942 InParanoid:Q06A37 KO:K14437 OrthoDB:EOG4MCWZD
NextBio:20823957 Uniprot:Q06A37
Length = 3011
Score = 202 (76.2 bits), Expect = 7.0e-16, Sum P(5) = 7.0e-16
Identities = 52/180 (28%), Positives = 93/180 (51%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L + W VV+DEA +KN ++ + + + L+GTP+QN++++L+S F
Sbjct: 1092 CPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHF 1151
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + +F + + +KLQA+L+ +MLRR K D + NL PK
Sbjct: 1152 LEPGRFPSETTFMQEFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--NLAPKE 1203
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K AF G N N+L ++ LR+ C+HP L+
Sbjct: 1204 ETIIEVELTNIQKKYYRAI----LEKNFAFLSKGGGQANVPNLLNTMMELRKCCNHPYLI 1259
Score = 75 (31.5 bits), Expect = 7.0e-16, Sum P(5) = 7.0e-16
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G + ++FSQ R LD++E+ L Q Y R+DG + R A+ F+
Sbjct: 1306 GGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFS 1354
Score = 63 (27.2 bits), Expect = 7.0e-16, Sum P(5) = 7.0e-16
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L ++Q + W+L + +C ILAD+ GLGKTI I +
Sbjct: 969 LREYQLEGVNWLLFNWYNTRNC---ILADEMGLGKTIQSITFL 1008
Score = 63 (27.2 bits), Expect = 7.0e-16, Sum P(5) = 7.0e-16
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430
LV+ P S + W RE L+V++YHG ++ ++L
Sbjct: 1021 LVIAPLSTIPNWEREFRTWTE----LNVVVYHGSQASRRTIQL 1059
Score = 41 (19.5 bits), Expect = 7.0e-16, Sum P(5) = 7.0e-16
Identities = 11/52 (21%), Positives = 25/52 (48%)
Query: 90 DHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTL 141
+ ++S+ +ADD+ + Q+ A+ EKI S +++K+ +
Sbjct: 765 EFKISDEEADDADAAGRDSPSNTSQSEQQESADAEGPVVEKIMSSRSVKKKM 816
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 180 (68.4 bits), Expect = 7.3e-16, Sum P(4) = 7.3e-16
Identities = 53/177 (29%), Positives = 92/177 (51%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +V+DEA IKN +++++ ++ R L+GTP+QN++ +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 569 YAVYKSFYSTIKIPISRNSLHGYK---KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+ F S ++N L K +L AVL+ +LRR K T ++ +LPPK
Sbjct: 365 FNSADDFDSWFD---TKNCLGDQKLVERLHAVLKPFLLRRIK-TDVEK----SLPPKKEI 416
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ SK + +Y K+ +K AG +++ +L +L++LR+ C+HP L
Sbjct: 417 KIYLGLSKMQREWYTKI---LMKDIDVLNSAGKMDK--MRLLNILMQLRKCCNHPYL 468
Score = 70 (29.7 bits), Expect = 7.3e-16, Sum P(4) = 7.3e-16
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ IAL+
Sbjct: 186 LRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 67 (28.6 bits), Expect = 7.3e-16, Sum P(4) = 7.3e-16
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVK 896
++FSQ TR+LD++E+ +Y RLDG P +R K
Sbjct: 509 LIFSQMTRLLDILEDYCMWRGYEYCRLDG--QTPHEEREDK 547
Score = 63 (27.2 bits), Expect = 7.3e-16, Sum P(4) = 7.3e-16
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRT---KDPVELAKYDVVLTTYSI 442
+V+ P S L W E + VP +L V+ + G +R +D + ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVP---SLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 443 VTNE 446
V E
Sbjct: 296 VIKE 299
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 176 (67.0 bits), Expect = 7.3e-16, Sum P(4) = 7.3e-16
Identities = 53/190 (27%), Positives = 91/190 (47%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L+K+ W +++DEA +KN Q+ A K + ++GTP+QNS+++L++ FL
Sbjct: 749 LSKIKWIYLMVDEAHRLKNSEAQLYTALLEFSTKNKLLITGTPLQNSVEELWALLHFLDP 808
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ F K S N L LR +LRR D + +LPPK +
Sbjct: 809 GKFKNKDEFVENYKNLSSFNESE-LANLHLELRPHILRRV---IKDVEK--SLPPKIERI 862
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGT-VNQNYANILLMLLRLRQACDHPLLVKE 685
+V+ S + +YK + L++ F D V N ++L +++ L++ C+HP L +
Sbjct: 863 LRVEMSPLQKQYYKWI----LER--NFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFES 916
Query: 686 YDFDSVGKIS 695
D G I+
Sbjct: 917 ADHGYGGDIN 926
Score = 87 (35.7 bits), Expect = 7.3e-16, Sum P(4) = 7.3e-16
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++FSQ RMLD++ L+ Q++RLDG+ R +A+ FN
Sbjct: 959 LIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFN 1002
Score = 64 (27.6 bits), Expect = 7.3e-16, Sum P(4) = 7.3e-16
Identities = 27/125 (21%), Positives = 57/125 (45%)
Query: 208 ILPSSLM--HGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEAT 265
++P L+ G S + + D+A+ + DE + + Q + + + K +A+
Sbjct: 551 VVPEYLVKWQGLSYAEATWEKDVDIAFAQVAIDEYKAR-EVSIAVQGKMVEQQRTKGKAS 609
Query: 266 L------PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319
L P+ L+ L +Q L +++ + ILAD+ GLGKT+ ++++
Sbjct: 610 LRKLDEQPEWLIGGTLRDYQLEGLNFLVNSWLNDTNV---ILADEMGLGKTVQSVSMLGF 666
Query: 320 QRSLQ 324
++ Q
Sbjct: 667 LQNTQ 671
Score = 63 (27.2 bits), Expect = 7.3e-16, Sum P(4) = 7.3e-16
Identities = 18/71 (25%), Positives = 34/71 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL------------AKYDV 435
LVV P S L WA+E +P +++++Y G +++ + K++
Sbjct: 678 LVVVPLSTLANWAKEFRKWLP---GMNIIVYVGTRASREVCQQYEFYNEKKVGRPIKFNA 734
Query: 436 VLTTYSIVTNE 446
+LTTY +V +
Sbjct: 735 LLTTYEVVLKD 745
Score = 63 (27.2 bits), Expect = 9.2e-16, Sum P(4) = 9.2e-16
Identities = 45/181 (24%), Positives = 72/181 (39%)
Query: 100 DSHYLSGNKNVGQL--------QTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLN 151
DSHY S K +G + P + +D K SQ K + HS +
Sbjct: 81 DSHYQSSTKRLGVTGRWGSTFWKDCQP-MGQREGSDPAK-DSQSGYKEAYHS-EDNHSND 137
Query: 152 TKSK--SSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDD---DIMMYEG- 205
K S EN N ++ D N H +G + V + + D Y ++++D D + Y+G
Sbjct: 138 RSEKLDSENENDNENEEEDNEMNK-HQSGQADVPADEMLSDEYYEQDEDNQSDHVHYKGY 196
Query: 206 -----NRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQP 260
+R LP + S S T ++ Y + D GD + Y+ ED + P
Sbjct: 197 SNPTNSRSLPKAGSAVHSNSRTSRAIHKNIHYSDSNHDHN---GDADMDYEEE-EDEDDP 252
Query: 261 K 261
+
Sbjct: 253 E 253
Score = 42 (19.8 bits), Expect = 1.2e-13, Sum P(4) = 1.2e-13
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 424 TKDPVELAKYDVVLTTYSIVTNEVPKQPSVD 454
TK E +Y L+ I N+V K+ +D
Sbjct: 497 TKKVTEEIRYRTALSREEIEVNDVSKEMDLD 527
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 180 (68.4 bits), Expect = 7.8e-16, Sum P(4) = 7.8e-16
Identities = 53/177 (29%), Positives = 92/177 (51%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +V+DEA IKN +++++ ++ R L+GTP+QN++ +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 569 YAVYKSFYSTIKIPISRNSLHGYK---KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+ F S ++N L K +L AVL+ +LRR K T ++ +LPPK
Sbjct: 365 FNSADDFDSWFD---TKNCLGDQKLVERLHAVLKPFLLRRIK-TDVEK----SLPPKKEI 416
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ SK + +Y K+ +K AG +++ +L +L++LR+ C+HP L
Sbjct: 417 KIYLGLSKMQREWYTKI---LMKDIDVLNSAGKMDK--MRLLNILMQLRKCCNHPYL 468
Score = 70 (29.7 bits), Expect = 7.8e-16, Sum P(4) = 7.8e-16
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ IAL+
Sbjct: 186 LRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 67 (28.6 bits), Expect = 7.8e-16, Sum P(4) = 7.8e-16
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVK 896
++FSQ TR+LD++E+ +Y RLDG P +R K
Sbjct: 509 LIFSQMTRLLDILEDYCMWRGYEYCRLDG--QTPHEEREDK 547
Score = 63 (27.2 bits), Expect = 7.8e-16, Sum P(4) = 7.8e-16
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRT---KDPVELAKYDVVLTTYSI 442
+V+ P S L W E + VP +L V+ + G +R +D + ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVP---SLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 443 VTNE 446
V E
Sbjct: 296 VIKE 299
>TAIR|locus:2160811 [details] [associations]
symbol:CHR24 "chromatin remodeling 24" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0046686 "response to cadmium ion" evidence=IEP] [GO:0006270
"DNA replication initiation" evidence=RCA] [GO:0006275 "regulation
of DNA replication" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048439 "flower morphogenesis" evidence=RCA] [GO:0048519
"negative regulation of biological process" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046686 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AF462829 EMBL:AY142010 IPI:IPI00526353 RefSeq:NP_201200.2
UniGene:At.28262 ProteinModelPortal:Q8W103 PaxDb:Q8W103
PRIDE:Q8W103 EnsemblPlants:AT5G63950.1 GeneID:836516
KEGG:ath:AT5G63950 TAIR:At5g63950 HOGENOM:HOG000029838
InParanoid:Q8W103 OMA:VIVYRLM PhylomeDB:Q8W103
ProtClustDB:CLSN2690259 Genevestigator:Q8W103 Uniprot:Q8W103
Length = 1090
Score = 131 (51.2 bits), Expect = 8.4e-16, Sum P(4) = 8.4e-16
Identities = 44/179 (24%), Positives = 85/179 (47%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF----LKYD 567
W ++LDE IKN TQ A++ + + R +SGTPIQN++ +L++ F F L D
Sbjct: 509 WDYMILDEGHLIKNPNTQRAKSLLEIPSSHRIIISGTPIQNNLKELWALFNFSCPGLLGD 568
Query: 568 PYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDG--QPIINLPPKTIS 625
+++ I +N+ +++ + + + + F+ + T
Sbjct: 569 KNWFKQNYEHYILRGTDKNATDREQRIGSTVAKNLREHIQPFFLRRLKSEVFGDDGATSK 628
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNY-ANILLMLLRLRQACDHPLLV 683
L+K K+E + +L + + ++AF ++ V + + L L L++ CDHPLL+
Sbjct: 629 LSK----KDEIVVWLRLTACQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLL 683
Score = 104 (41.7 bits), Expect = 8.4e-16, Sum P(4) = 8.4e-16
Identities = 33/105 (31%), Positives = 49/105 (46%)
Query: 213 LMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLS 272
++ GK + + P+ RS +A G DER + L + TLP G ++
Sbjct: 322 ILSGKKAAEMKINKPA----RSYNAKRH--GYDERSLEDEGSITLTGLNLSYTLP-GKIA 374
Query: 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L HQ+ L W+ T+ GGIL DD GLGKT+ I + +
Sbjct: 375 TMLYPHQREGLNWLWSLHTQGK---GGILGDDMGLGKTMQICSFL 416
Score = 88 (36.0 bits), Expect = 8.4e-16, Sum P(4) = 8.4e-16
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF 898
++FSQ +ML+L+++SL + + R+DGT P R + V++F
Sbjct: 752 LIFSQTRKMLNLIQDSLTSNGYSFLRIDGTTKAPDRLKTVEEF 794
Score = 60 (26.2 bits), Expect = 8.4e-16, Sum P(4) = 8.4e-16
Identities = 25/79 (31%), Positives = 34/79 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLI--YHGGSRTKDPVELAKY----DVVLTTYS 441
LVV P ++L W +EL LS + Y+G S +L ++LTTY
Sbjct: 429 LVVAPKTLLPHWMKELAT-----VGLSQMTREYYGTSTKAREYDLHHILQGKGILLTTYD 483
Query: 442 IVTNEVPKQPSVDEEEADE 460
IV N K D+ DE
Sbjct: 484 IVRNNT-KALQGDDHYTDE 501
>RGD|1594200 [details] [associations]
symbol:LOC680231 "similar to chromodomain helicase DNA binding
protein 9" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:1594200 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 OrthoDB:EOG4548XQ IPI:IPI00957597
Ensembl:ENSRNOT00000018201 Uniprot:D3ZVE2
Length = 2881
Score = 208 (78.3 bits), Expect = 9.0e-16, Sum P(4) = 9.0e-16
Identities = 52/191 (27%), Positives = 99/191 (51%)
Query: 503 GCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFR 562
GCG L + W V++DEA +KN ++ + + + L+GTP+QN++++L+S
Sbjct: 981 GCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLH 1040
Query: 563 FLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPK 622
FL+ + +F + + +KLQA+L+ +MLRR K D + L PK
Sbjct: 1041 FLEPLRFPSESTFMQEFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--RLAPK 1092
Query: 623 TISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
++ +V+ + + +Y+ + L+K +F G N N++ ++ LR+ C+HP L
Sbjct: 1093 EETIIEVELTNIQKKYYRAI----LEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYL 1148
Query: 683 VKEYDFDSVGK 693
+K + +G+
Sbjct: 1149 IKGAEEKIIGE 1159
Score = 71 (30.1 bits), Expect = 9.0e-16, Sum P(4) = 9.0e-16
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G K ++FSQ R LD++E+ L Y R+DG + R A+ F+
Sbjct: 1196 GGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFS 1244
Score = 64 (27.6 bits), Expect = 9.0e-16, Sum P(4) = 9.0e-16
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L ++Q L W+L +C ILAD+ GLGKTI I +
Sbjct: 859 LREYQLEGLNWLLFNWYNRRNC---ILADEMGLGKTIQSITFL 898
Score = 54 (24.1 bits), Expect = 9.0e-16, Sum P(4) = 9.0e-16
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE 429
L++ P S + W RE ++V++YHG ++ ++
Sbjct: 911 LIIAPLSTIANWEREFRTWTD----INVVVYHGSLISRQMIQ 948
>RGD|1311921 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10116 "Rattus norvegicus" [GO:0001501 "skeletal system
development" evidence=IEA;ISO] [GO:0001568 "blood vessel
development" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0007512 "adult
heart development" evidence=IEA;ISO] [GO:0007605 "sensory
perception of sound" evidence=IEA;ISO] [GO:0007626 "locomotory
behavior" evidence=ISO] [GO:0007628 "adult walking behavior"
evidence=IEA;ISO] [GO:0008015 "blood circulation" evidence=IEA;ISO]
[GO:0021545 "cranial nerve development" evidence=IEA;ISO]
[GO:0030217 "T cell differentiation" evidence=IEA;ISO] [GO:0030540
"female genitalia development" evidence=IEA;ISO] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA;ISO] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA;ISO] [GO:0042471 "ear morphogenesis" evidence=ISO]
[GO:0042472 "inner ear morphogenesis" evidence=ISO] [GO:0043010
"camera-type eye development" evidence=ISO] [GO:0043584 "nose
development" evidence=IEA;ISO] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA;ISO] [GO:0048806 "genitalia
development" evidence=ISO] [GO:0048844 "artery morphogenesis"
evidence=IEA;ISO] [GO:0050890 "cognition" evidence=IEA;ISO]
[GO:0060021 "palate development" evidence=IEA;ISO] [GO:0060041
"retina development in camera-type eye" evidence=IEA;ISO]
[GO:0060123 "regulation of growth hormone secretion"
evidence=IEA;ISO] [GO:0060173 "limb development" evidence=ISO]
[GO:0060324 "face development" evidence=IEA;ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 RGD:1311921 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0008015 GO:GO:0003007
GO:GO:0050890 GO:GO:0001701 GO:GO:0040018 GO:GO:0007417
GO:GO:0003682 GO:GO:0001501 GO:GO:0060041 GO:GO:0007605
GO:GO:0007512 GO:GO:0004386 GO:GO:0035116 GO:GO:0060324
GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030540
GO:GO:0007628 GO:GO:0030217 GO:GO:0048752 InterPro:IPR023780
CTD:55636 KO:K14437 OrthoDB:EOG4MCWZD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 IPI:IPI00366595
RefSeq:XP_003749947.1 PRIDE:D3ZAP7 Ensembl:ENSRNOT00000008901
GeneID:312974 KEGG:rno:312974 UCSC:RGD:1311921 Uniprot:D3ZAP7
Length = 2985
Score = 199 (75.1 bits), Expect = 9.2e-16, Sum P(4) = 9.2e-16
Identities = 51/180 (28%), Positives = 92/180 (51%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L + W VV+DEA +KN ++ + + + L+GTP+QN++++L+S F
Sbjct: 1080 CPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHF 1139
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + +F + + +KLQA+L+ +MLRR K D + NL PK
Sbjct: 1140 LEPSRFPSETTFMQEFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--NLAPKE 1191
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K F G N N+L ++ LR+ C+HP L+
Sbjct: 1192 ETIIEVELTNIQKKYYRAI----LEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLI 1247
Score = 75 (31.5 bits), Expect = 9.2e-16, Sum P(4) = 9.2e-16
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G + ++FSQ R LD++E+ L Q Y R+DG + R A+ F+
Sbjct: 1294 GGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFS 1342
Score = 63 (27.2 bits), Expect = 9.2e-16, Sum P(4) = 9.2e-16
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430
LV+ P S + W RE L+V++YHG ++ ++L
Sbjct: 1009 LVIAPLSTIPNWEREFRTWTE----LNVVVYHGSQASRRTIQL 1047
Score = 61 (26.5 bits), Expect = 9.2e-16, Sum P(4) = 9.2e-16
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L ++Q + W+L +C ILAD+ GLGKTI I +
Sbjct: 957 LREYQLEGVNWLLFNWYNMRNC---ILADEMGLGKTIQSITFL 996
>MGI|MGI:2444748 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=ISO] [GO:0001568 "blood vessel development" evidence=IMP]
[GO:0001701 "in utero embryonic development" evidence=ISO;IMP]
[GO:0003007 "heart morphogenesis" evidence=ISO;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=ISO] [GO:0007512 "adult heart
development" evidence=IMP] [GO:0007605 "sensory perception of
sound" evidence=IMP] [GO:0007626 "locomotory behavior"
evidence=IMP] [GO:0007628 "adult walking behavior" evidence=IMP]
[GO:0008015 "blood circulation" evidence=IMP] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0021545 "cranial nerve
development" evidence=ISO] [GO:0030217 "T cell differentiation"
evidence=ISO] [GO:0030540 "female genitalia development"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0042471 "ear morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis"
evidence=ISO;IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0043584 "nose development" evidence=ISO;IMP]
[GO:0048752 "semicircular canal morphogenesis" evidence=IGI]
[GO:0048806 "genitalia development" evidence=ISO] [GO:0048844
"artery morphogenesis" evidence=IGI] [GO:0050890 "cognition"
evidence=ISO] [GO:0060021 "palate development" evidence=ISO;IMP]
[GO:0060041 "retina development in camera-type eye" evidence=ISO]
[GO:0060123 "regulation of growth hormone secretion" evidence=ISO]
[GO:0060173 "limb development" evidence=ISO] [GO:0060324 "face
development" evidence=ISO] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 MGI:MGI:2444748 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008015 GO:GO:0003007 GO:GO:0050890 GO:GO:0001701
GO:GO:0040018 GO:GO:0007417 GO:GO:0006351 GO:GO:0003682
GO:GO:0016568 GO:GO:0043010 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0030540 GO:GO:0007628 GO:GO:0030217
GO:GO:0048752 InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
CTD:55636 HOGENOM:HOG000246942 KO:K14437 OrthoDB:EOG4MCWZD
OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584 GO:GO:0060123 EMBL:AK042727
EMBL:AK171051 EMBL:AK171857 EMBL:AK172025 EMBL:AL732627
EMBL:AL805903 EMBL:BC034239 IPI:IPI00345676 IPI:IPI00666779
IPI:IPI00849588 RefSeq:NP_001074886.1 UniGene:Mm.138792
ProteinModelPortal:A2AJK6 SMR:A2AJK6 IntAct:A2AJK6 STRING:A2AJK6
PhosphoSite:A2AJK6 PaxDb:A2AJK6 PRIDE:A2AJK6
Ensembl:ENSMUST00000039267 Ensembl:ENSMUST00000051558
Ensembl:ENSMUST00000127476 GeneID:320790 KEGG:mmu:320790
UCSC:uc008rxy.1 UCSC:uc008rya.1 GeneTree:ENSGT00560000077077
InParanoid:A2AJK6 NextBio:397435 Bgee:A2AJK6 CleanEx:MM_CHD7
Genevestigator:A2AJK6 Uniprot:A2AJK6
Length = 2986
Score = 199 (75.1 bits), Expect = 9.2e-16, Sum P(4) = 9.2e-16
Identities = 51/180 (28%), Positives = 92/180 (51%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L + W VV+DEA +KN ++ + + + L+GTP+QN++++L+S F
Sbjct: 1081 CPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHF 1140
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + +F + + +KLQA+L+ +MLRR K D + NL PK
Sbjct: 1141 LEPSRFPSETTFMQEFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--NLAPKE 1192
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K F G N N+L ++ LR+ C+HP L+
Sbjct: 1193 ETIIEVELTNIQKKYYRAI----LEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLI 1248
Score = 75 (31.5 bits), Expect = 9.2e-16, Sum P(4) = 9.2e-16
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G + ++FSQ R LD++E+ L Q Y R+DG + R A+ F+
Sbjct: 1295 GGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFS 1343
Score = 63 (27.2 bits), Expect = 9.2e-16, Sum P(4) = 9.2e-16
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430
LV+ P S + W RE L+V++YHG ++ ++L
Sbjct: 1010 LVIAPLSTIPNWEREFRTWTE----LNVVVYHGSQASRRTIQL 1048
Score = 61 (26.5 bits), Expect = 9.2e-16, Sum P(4) = 9.2e-16
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L ++Q + W+L +C ILAD+ GLGKTI I +
Sbjct: 958 LREYQLEGVNWLLFNWYNMRNC---ILADEMGLGKTIQSITFL 997
>UNIPROTKB|F1RT88 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:CU179734
Ensembl:ENSSSCT00000006828 Uniprot:F1RT88
Length = 2991
Score = 199 (75.1 bits), Expect = 9.3e-16, Sum P(4) = 9.3e-16
Identities = 51/180 (28%), Positives = 92/180 (51%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L + W VV+DEA +KN ++ + + + L+GTP+QN++++L+S F
Sbjct: 1084 CPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHF 1143
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + +F + + +KLQA+L+ +MLRR K D + NL PK
Sbjct: 1144 LEPSRFPSETTFMQEFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--NLAPKE 1195
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K F G N N+L ++ LR+ C+HP L+
Sbjct: 1196 ETIIEVELTNIQKKYYRAI----LEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLI 1251
Score = 75 (31.5 bits), Expect = 9.3e-16, Sum P(4) = 9.3e-16
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G + ++FSQ R LD++E+ L Q Y R+DG + R A+ F+
Sbjct: 1298 GGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFS 1346
Score = 63 (27.2 bits), Expect = 9.3e-16, Sum P(4) = 9.3e-16
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430
LV+ P S + W RE L+V++YHG ++ ++L
Sbjct: 1013 LVIAPLSTIPNWEREFRTWTE----LNVVVYHGSQASRRTIQL 1051
Score = 61 (26.5 bits), Expect = 9.3e-16, Sum P(4) = 9.3e-16
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L ++Q + W+L +C ILAD+ GLGKTI I +
Sbjct: 961 LREYQLEGVNWLLFNWYNMRNC---ILADEMGLGKTIQSITFL 1000
>SGD|S000004237 [details] [associations]
symbol:IRC20 "Putative helicase" species:4932 "Saccharomyces
cerevisiae" [GO:0045003 "double-strand break repair via
synthesis-dependent strand annealing" evidence=IGI;IMP] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006950 "response to stress" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SGD:S000004237
Prosite:PS00518 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:BK006945
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386 HSSP:Q9LRB7
EMBL:U20865 InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045003 PIR:S59393
RefSeq:NP_013348.1 ProteinModelPortal:Q06554 SMR:Q06554
DIP:DIP-6373N IntAct:Q06554 MINT:MINT-700566 STRING:Q06554
PaxDb:Q06554 EnsemblFungi:YLR247C GeneID:850949 KEGG:sce:YLR247C
CYGD:YLR247c GeneTree:ENSGT00700000104571 KO:K15710 OMA:HTWGVSG
OrthoDB:EOG4Q2HPM NextBio:967413 Genevestigator:Q06554
GermOnline:YLR247C Uniprot:Q06554
Length = 1556
Score = 129 (50.5 bits), Expect = 9.6e-16, Sum P(5) = 9.6e-16
Identities = 52/199 (26%), Positives = 86/199 (43%)
Query: 501 DYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSY 560
DY PLA + ++R++LDE Q +++ T A+ L W +SGTPIQN I +
Sbjct: 518 DYS-SPLALMQFYRIILDEVQMLRSSSTYSAKCTSLLHRIHTWGVSGTPIQN-IYNFRMI 575
Query: 561 FRFLKYDPYAVYKSFYSTIKIPIS-RNSLHGYKKLQAV--LRAIM--LRRTKGTFI---- 611
+LK P+ F T++ I RN Y V L+ + ++ F
Sbjct: 576 MSYLKLHPFCDEVDFIRTLQEEIKLRNEAKDYTSNDFVCQLKGVRFSIKDCMNIFYRYDL 635
Query: 612 -------DGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYA 664
+ I++P + + ++F+ EW Y L ++ L+ + G+ + +
Sbjct: 636 CIRHSKANVASQIHIPRQHNFIIPLEFAPIEWDNYLNLWNNFLE-LSGYNSDGSGSPRVS 694
Query: 665 NILL--MLLRLRQACDHPL 681
N L L RLR C H L
Sbjct: 695 NAFLNEWLSRLRYICCHAL 713
Score = 94 (38.1 bits), Expect = 9.6e-16, Sum P(5) = 9.6e-16
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS------RTKDPV--ELAKYDVVLT 438
TL++CP ++L+QW E+E +L Y G + +T D +L +YD+++T
Sbjct: 433 TLIICPNAILKQWLEEIELHAN---SLKWYTYRGYNEIMKDCKTVDEAVQQLCQYDIIVT 489
Query: 439 TYSIVTNEV 447
+Y+I+ EV
Sbjct: 490 SYNIIATEV 498
Score = 80 (33.2 bits), Expect = 9.6e-16, Sum P(5) = 9.6e-16
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 296 CLGGILADDQGLGKTISIIALIQM-QRSLQSKSKTEVLGNQKT 337
C G+LA++ GLGKTI I++LI + +R L+ T + +T
Sbjct: 384 CAKGVLAEEMGLGKTIEILSLILLNRRKLKDSEATFIDDENRT 426
Score = 68 (29.0 bits), Expect = 9.6e-16, Sum P(5) = 9.6e-16
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 721 CCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCK 762
C +C E + CGH FC C ++ CP CK
Sbjct: 1239 CSICLGEVEIGAIIKCGHYFCKSCILTWLRAHSK-CPI--CK 1277
Score = 61 (26.5 bits), Expect = 9.6e-16, Sum P(5) = 9.6e-16
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 259 QPKVEATLPDGLLSVNLLKHQKIALAWMLQKE 290
+P + ++PD L VNLL Q+ ++ WML KE
Sbjct: 277 KPFLPQSIPD--LKVNLLPFQRESVEWMLIKE 306
Score = 37 (18.1 bits), Expect = 1.1e-12, Sum P(5) = 1.1e-12
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 795 DKSGILDNEYISSKIRTVLDILH 817
+ G+L N +R ++++LH
Sbjct: 846 NNDGMLSNHLKKKGLRAMMNLLH 868
Score = 37 (18.1 bits), Expect = 1.3e-06, Sum P(5) = 1.3e-06
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 545 LSGTPIQNSIDDL 557
+SGTP++ D+L
Sbjct: 1098 ISGTPLRTVFDEL 1110
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 180 (68.4 bits), Expect = 9.9e-16, Sum P(4) = 9.9e-16
Identities = 53/177 (29%), Positives = 92/177 (51%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +V+DEA IKN +++++ ++ R L+GTP+QN++ +L++ FL D
Sbjct: 305 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 364
Query: 569 YAVYKSFYSTIKIPISRNSLHGYK---KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+ F S ++N L K +L AVL+ +LRR K T ++ +LPPK
Sbjct: 365 FNSADDFDSWFD---TKNCLGDQKLVERLHAVLKPFLLRRIK-TDVEK----SLPPKKEI 416
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ SK + +Y K+ +K AG +++ +L +L++LR+ C+HP L
Sbjct: 417 KIYLGLSKMQREWYTKI---LMKDIDVLNSAGKMDK--MRLLNILMQLRKCCNHPYL 468
Score = 70 (29.7 bits), Expect = 9.9e-16, Sum P(4) = 9.9e-16
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ IAL+
Sbjct: 186 LRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 225
Score = 66 (28.3 bits), Expect = 9.9e-16, Sum P(4) = 9.9e-16
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDG 884
++FSQ TR+LD++E+ +Y RLDG
Sbjct: 509 LIFSQMTRLLDILEDYCMWRGYEYCRLDG 537
Score = 63 (27.2 bits), Expect = 9.9e-16, Sum P(4) = 9.9e-16
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRT---KDPVELAKYDVVLTTYSI 442
+V+ P S L W E + VP +L V+ + G +R +D + ++DV +T+Y +
Sbjct: 239 MVLVPKSTLHNWMNEFKRWVP---SLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 295
Query: 443 VTNE 446
V E
Sbjct: 296 VIKE 299
>UNIPROTKB|J9NRN3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 EMBL:AAEX03003895
EMBL:AAEX03003896 EMBL:AAEX03003897 Ensembl:ENSCAFT00000044104
Uniprot:J9NRN3
Length = 1195
Score = 183 (69.5 bits), Expect = 9.9e-16, Sum P(4) = 9.9e-16
Identities = 50/176 (28%), Positives = 91/176 (51%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W +V+DEA +KN++++ R S + + L+GTP+QN++++L+ FL
Sbjct: 810 LGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTP 869
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + + F IS+ KKL +L MLRR K N+P KT +
Sbjct: 870 ERFNNLEGFLEEFA-DISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----NMPAKTELI 921
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+V+ S+ + +YK + + + F+A G NQ ++L +++ L++ C+HP L
Sbjct: 922 VRVELSQMQKKYYKFILT---RNFEALNSKGGGNQ--VSLLNIMMDLKKCCNHPYL 972
Score = 91 (37.1 bits), Expect = 9.9e-16, Sum P(4) = 9.9e-16
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
++FSQ T+MLDL+E+ L +Y R+DG ++ R A+ FN ++ C L
Sbjct: 1018 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 1071
Score = 57 (25.1 bits), Expect = 9.9e-16, Sum P(4) = 9.9e-16
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 300 ILADDQGLGKTI-SIIALIQMQRSLQSK 326
ILAD+ GLGKT+ +I+ L + + SK
Sbjct: 696 ILADEMGLGKTVQTIVFLYSLYKEGHSK 723
Score = 53 (23.7 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 452 SVDEEEADEKNGETYGLSSEFSVNKKRKK 480
S +E++ +EK+ E+ G S++S NKK+KK
Sbjct: 50 SENEDDLEEKS-ESEG--SDYSPNKKKKK 75
Score = 50 (22.7 bits), Expect = 9.9e-16, Sum P(4) = 9.9e-16
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV 428
LV P S + W RE E PD V+ Y G ++ +
Sbjct: 727 LVSAPLSTIINWEREFEMWAPD---FYVVTYTGDKESRSVI 764
Score = 45 (20.9 bits), Expect = 3.1e-15, Sum P(4) = 3.1e-15
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 423 RTKDPVELAKYDVVLTTYSIVT 444
R K V++ K+ V+LT+Y ++T
Sbjct: 784 RMKKEVQI-KFHVLLTSYELIT 804
>UNIPROTKB|E1BS48 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AADN02038292
EMBL:AADN02038293 EMBL:AADN02038294 EMBL:AADN02038295
EMBL:AADN02038296 EMBL:AADN02038297 EMBL:AADN02038298
IPI:IPI00579055 Ensembl:ENSGALT00000005902 Uniprot:E1BS48
Length = 2614
Score = 204 (76.9 bits), Expect = 1.0e-15, Sum P(5) = 1.0e-15
Identities = 51/182 (28%), Positives = 94/182 (51%)
Query: 503 GCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFR 562
GC L + W V++DEA +KN ++ + + + L+GTP+QN++++L+S
Sbjct: 979 GCPELNAIEWRCVIIDEAHRLKNRNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLH 1038
Query: 563 FLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPK 622
FL+ + +F + + +KLQA+L+ +MLRR K D + L PK
Sbjct: 1039 FLEPLRFPAESTFMQEFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--KLAPK 1090
Query: 623 TISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
++ +V+ + + +Y+ + L+K AF G N N++ ++ LR+ C+HP L
Sbjct: 1091 EETIIEVELTNIQKKYYRAI----LEKNFAFLSKGAGQANVPNLVNTMMELRKCCNHPYL 1146
Query: 683 VK 684
+K
Sbjct: 1147 IK 1148
Score = 71 (30.1 bits), Expect = 1.0e-15, Sum P(5) = 1.0e-15
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G K ++FSQ R LD++E+ L Y R+DG + R A+ F+
Sbjct: 1194 GGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFS 1242
Score = 64 (27.6 bits), Expect = 1.0e-15, Sum P(5) = 1.0e-15
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L ++Q L W+L +C ILAD+ GLGKTI I +
Sbjct: 857 LREYQLEGLNWLLFNWYNRRNC---ILADEMGLGKTIQSITFL 896
Score = 57 (25.1 bits), Expect = 1.0e-15, Sum P(5) = 1.0e-15
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE 429
L++ P S + W RE L+V++YHG ++ ++
Sbjct: 909 LIIAPLSTITNWEREFRTWTD----LNVVVYHGSMISRQMIQ 946
Score = 43 (20.2 bits), Expect = 1.0e-15, Sum P(5) = 1.0e-15
Identities = 19/93 (20%), Positives = 36/93 (38%)
Query: 125 SADYEKISSQQALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNS 184
S+D + SQ + + H L +S+ + + S + T G+ H +T
Sbjct: 444 SSDIVRAQSQTQIHPWHSSVSSQH-LQDRSRVTFQGQPPSS-KKTDGSGSHTKSQNT-QV 500
Query: 185 KGYIRDYYVKKNDDDIMMYEGNRILPSSLMHGK 217
+ KK D + + NRI+ ++ K
Sbjct: 501 RAMSEKKQRKKADSESKQEKANRIISEAIAKAK 533
Score = 37 (18.1 bits), Expect = 9.8e-12, Sum P(4) = 9.8e-12
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 451 PSVDEEEADEKNGETYGLSSEFSVNKKRK 479
PSV E +EK G + +KK K
Sbjct: 550 PSVSAEGKEEKKGRKVKSKPKDKESKKPK 578
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 134 (52.2 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
Identities = 48/173 (27%), Positives = 77/173 (44%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAV 571
W +V+DEA +KN + + + L+GTPIQNS+ +LYS F++ D ++
Sbjct: 168 WSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSK 227
Query: 572 YK--SFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKV 629
+ F + I + S +L +L+ +LRR K + LP KT +
Sbjct: 228 EEVGDFIQRYQ-DIEKES-ESASELHKLLQPFLLRRVKA-----EVATELPKKTEVVIYH 280
Query: 630 DFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
S + +YK + +K AF + NIL +LR+ DHP L
Sbjct: 281 GMSALQKKYYKAI---LMKDLDAFENETAKKVKLQNILS---QLRKCVDHPYL 327
Score = 84 (34.6 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 269 GLLSVNLLKHQKIALAWMLQKETRSLHCLGG-ILADDQGLGKTISIIAL 316
GL ++L +Q + W+ Q+ HC G IL D+ GLGKT IAL
Sbjct: 40 GLTGIHLRSYQLEGVNWLAQR----FHCQNGCILGDEMGLGKTCQTIAL 84
Score = 82 (33.9 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF 898
G + ++FSQ T+MLD++++ ++ Y R+DG++ R A+K+F
Sbjct: 362 GGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNF 409
Score = 78 (32.5 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-----DPVELAKYDVVLTTYSI 442
L++CP SVL W E++ P LS + Y G + D + +++ V+LTTY I
Sbjct: 99 LILCPLSVLSNWKEEMQRFAP---GLSCVTYAGDKEERACLQQDLKQESRFHVLLTTYEI 155
>GENEDB_PFALCIPARUM|PFB0730w [details] [associations]
symbol:PFB0730w "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0006338 GO:GO:0016514 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS
PIR:F71607 RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 150 (57.9 bits), Expect = 1.1e-15, Sum P(5) = 1.1e-15
Identities = 56/216 (25%), Positives = 106/216 (49%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFL-- 564
L K+ W +V+DE +KN++++ ++K R L+GTP+QN++ +L+S FL
Sbjct: 1001 LMKISWNYIVVDEGHRMKNNKSRFHVFLSEFKSKYRILLTGTPLQNNLSELWSLLNFLLP 1060
Query: 565 -------KYDPYAVYKSFYSTIKIP---ISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQ 614
++ + V KS ++ + L +L +VL MLRR K +
Sbjct: 1061 KIFSSCVDFEKWFV-KSLHNEKDVYEHITEEEQLLIINRLHSVLLPFMLRRVKKDVLK-- 1117
Query: 615 PIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQN-YANILLMLLRL 673
+LP K ++ S + YK++++ K FK G++ + NI++ +L
Sbjct: 1118 ---SLPKKYEYNIHIELSLYQKILYKQIQT---KGFKQVNHNGSITTKIFQNIVM---QL 1168
Query: 674 RQACDHP-LLVKEYDFD-SVGKISGE---MAKRLPR 704
R+ +HP L + +Y+ D ++ K SG+ + + LP+
Sbjct: 1169 RKIVNHPYLFLYDYNIDENIIKCSGKFEVLDRMLPK 1204
Score = 97 (39.2 bits), Expect = 1.1e-15, Sum P(5) = 1.1e-15
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 261 KVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIAL 316
K + P L+ L+K+Q L W++ +LH GILAD+ GLGKTI I+L
Sbjct: 870 KEKVKQPSILIGGELMKYQLEGLEWLVSLYNNNLH---GILADEMGLGKTIQTISL 922
Score = 83 (34.3 bits), Expect = 1.1e-15, Sum P(5) = 1.1e-15
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDRE 903
K ++FSQ T++++++ + L +Y RLDG + L R + + FN + E
Sbjct: 1211 KVLIFSQMTKLMNILCDYLEFRGYKYHRLDGNIGLQERKKIIDQFNNNVE 1260
Score = 65 (27.9 bits), Expect = 1.1e-15, Sum P(5) = 1.1e-15
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV--ELAK--YDVVLTTYSIV 443
L++ P S L W E P +L+V+ Y G + + +L + +D+ +TT+ +V
Sbjct: 938 LIIVPLSTLPNWISEFNRWCP---SLNVITYRGNKLERKHIAKKLLEQTFDICITTFDLV 994
Query: 444 TNE 446
E
Sbjct: 995 IKE 997
Score = 41 (19.5 bits), Expect = 1.1e-15, Sum P(5) = 1.1e-15
Identities = 25/108 (23%), Positives = 44/108 (40%)
Query: 107 NKNVGQLQTVNPRIANVASAD--YEKISS-QQALKRTLPAFPQPHSLNTKSKSSVENMNS 163
NK + +L V + N S Y+K + Q++ ++ H N ++ +N NS
Sbjct: 754 NKRLQELLDVTEQFLNNMSKCVLYQKKEAYQESSEQNFHGLIN-HK-NEDNEKCHKNYNS 811
Query: 164 SQIRDTFGNAYHLA--GPSTV--NSKGYIRDYYVKKNDDDIMMYEGNR 207
+ + ++L G N KGY Y +N+ I Y+ R
Sbjct: 812 KDNNNILQSVHNLTTHGQQNGYNNKKGYDTMYEHNENNTKICNYKNAR 859
Score = 40 (19.1 bits), Expect = 1.7e-11, Sum P(5) = 1.7e-11
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 795 DKSGILDNEYISSKIRTVLDILHTQCELNTKC 826
+ +GI + I+ ++ IL C NTKC
Sbjct: 1642 NNNGIQNGSSINEGVKE--KILDEYCNNNTKC 1671
Score = 38 (18.4 bits), Expect = 2.1e-15, Sum P(5) = 2.1e-15
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 153 KSKSSVENMNSS 164
KS +S+EN NSS
Sbjct: 307 KSTNSIENGNSS 318
>UNIPROTKB|O96239 [details] [associations]
symbol:PFB0730w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006338
GO:GO:0016514 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS PIR:F71607
RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 150 (57.9 bits), Expect = 1.1e-15, Sum P(5) = 1.1e-15
Identities = 56/216 (25%), Positives = 106/216 (49%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFL-- 564
L K+ W +V+DE +KN++++ ++K R L+GTP+QN++ +L+S FL
Sbjct: 1001 LMKISWNYIVVDEGHRMKNNKSRFHVFLSEFKSKYRILLTGTPLQNNLSELWSLLNFLLP 1060
Query: 565 -------KYDPYAVYKSFYSTIKIP---ISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQ 614
++ + V KS ++ + L +L +VL MLRR K +
Sbjct: 1061 KIFSSCVDFEKWFV-KSLHNEKDVYEHITEEEQLLIINRLHSVLLPFMLRRVKKDVLK-- 1117
Query: 615 PIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQN-YANILLMLLRL 673
+LP K ++ S + YK++++ K FK G++ + NI++ +L
Sbjct: 1118 ---SLPKKYEYNIHIELSLYQKILYKQIQT---KGFKQVNHNGSITTKIFQNIVM---QL 1168
Query: 674 RQACDHP-LLVKEYDFD-SVGKISGE---MAKRLPR 704
R+ +HP L + +Y+ D ++ K SG+ + + LP+
Sbjct: 1169 RKIVNHPYLFLYDYNIDENIIKCSGKFEVLDRMLPK 1204
Score = 97 (39.2 bits), Expect = 1.1e-15, Sum P(5) = 1.1e-15
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 261 KVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIAL 316
K + P L+ L+K+Q L W++ +LH GILAD+ GLGKTI I+L
Sbjct: 870 KEKVKQPSILIGGELMKYQLEGLEWLVSLYNNNLH---GILADEMGLGKTIQTISL 922
Score = 83 (34.3 bits), Expect = 1.1e-15, Sum P(5) = 1.1e-15
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDRE 903
K ++FSQ T++++++ + L +Y RLDG + L R + + FN + E
Sbjct: 1211 KVLIFSQMTKLMNILCDYLEFRGYKYHRLDGNIGLQERKKIIDQFNNNVE 1260
Score = 65 (27.9 bits), Expect = 1.1e-15, Sum P(5) = 1.1e-15
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV--ELAK--YDVVLTTYSIV 443
L++ P S L W E P +L+V+ Y G + + +L + +D+ +TT+ +V
Sbjct: 938 LIIVPLSTLPNWISEFNRWCP---SLNVITYRGNKLERKHIAKKLLEQTFDICITTFDLV 994
Query: 444 TNE 446
E
Sbjct: 995 IKE 997
Score = 41 (19.5 bits), Expect = 1.1e-15, Sum P(5) = 1.1e-15
Identities = 25/108 (23%), Positives = 44/108 (40%)
Query: 107 NKNVGQLQTVNPRIANVASAD--YEKISS-QQALKRTLPAFPQPHSLNTKSKSSVENMNS 163
NK + +L V + N S Y+K + Q++ ++ H N ++ +N NS
Sbjct: 754 NKRLQELLDVTEQFLNNMSKCVLYQKKEAYQESSEQNFHGLIN-HK-NEDNEKCHKNYNS 811
Query: 164 SQIRDTFGNAYHLA--GPSTV--NSKGYIRDYYVKKNDDDIMMYEGNR 207
+ + ++L G N KGY Y +N+ I Y+ R
Sbjct: 812 KDNNNILQSVHNLTTHGQQNGYNNKKGYDTMYEHNENNTKICNYKNAR 859
Score = 40 (19.1 bits), Expect = 1.7e-11, Sum P(5) = 1.7e-11
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 795 DKSGILDNEYISSKIRTVLDILHTQCELNTKC 826
+ +GI + I+ ++ IL C NTKC
Sbjct: 1642 NNNGIQNGSSINEGVKE--KILDEYCNNNTKC 1671
Score = 38 (18.4 bits), Expect = 2.1e-15, Sum P(5) = 2.1e-15
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 153 KSKSSVENMNSS 164
KS +S+EN NSS
Sbjct: 307 KSTNSIENGNSS 318
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 147 (56.8 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 51/198 (25%), Positives = 93/198 (46%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR-RWCLSGTPIQNSIDDLYSYFRFLK 565
L+K+ W +++DE +KN +++++ R R L+GTP+QN++ +L++ F+
Sbjct: 653 LSKIKWTHMIVDEGHRMKNTQSKLSSTLSQYYTSRYRLILTGTPLQNNLPELWALLNFVL 712
Query: 566 YDPYAVYKSFYSTIKIPISRNS------------LHGYKKLQAVLRAIMLRRTKGTFIDG 613
+ + KSF P + L ++L VLR +LRR K D
Sbjct: 713 PNIFKSVKSFDEWFNTPFANTGGQDRMDLTEEEQLLVIRRLHKVLRPFLLRRLKK---DV 769
Query: 614 QPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRL 673
+ +LP K + K FS + K+L + + K + G V + ML++L
Sbjct: 770 EK--DLPDKQERVIKCRFSALQAKLNKQLATHN-KMVVSDGKGGKVGMR--GLSNMLMQL 824
Query: 674 RQACDHPLLVKEYDFDSV 691
R+ C+HP + ++ + D V
Sbjct: 825 RKLCNHPFVFEQVE-DQV 841
Score = 101 (40.6 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 32/94 (34%), Positives = 45/94 (47%)
Query: 224 FGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIAL 283
F D SGS +E G ++ Y A + + E P L+ L ++Q L
Sbjct: 490 FDDDDDEDIASGSDEEGE--GRRKIDYYAVAHRIKEEITEQ--PSILVGGTLKEYQMKGL 545
Query: 284 AWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
WM+ +L+ GILAD+ GLGKTI I+LI
Sbjct: 546 QWMISLYNNNLN---GILADEMGLGKTIQTISLI 576
Score = 70 (29.7 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHG--GSRTKDP--VELAKYDVVLTTYSIV 443
LV+ P S L W E E P ++S ++Y G +R + + + V+LTTY +
Sbjct: 590 LVIVPLSTLTNWNLEFEKWAP---SVSRIVYKGPPNARKQQQQNIRWGNFQVLLTTYEYI 646
Query: 444 TNEVP 448
+ P
Sbjct: 647 IKDRP 651
Score = 68 (29.0 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNT-DREV-CSL 907
++F Q T++++++E+ L ++Y RLDG+ R +K FN D E C L
Sbjct: 876 LMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDLLKLFNAPDSEYFCFL 929
Score = 37 (18.1 bits), Expect = 2.5e-09, Sum P(4) = 2.5e-09
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 299 GILADDQGLGKTISIIALIQMQRSLQSK 326
G+ DD K ++++ +Q Q++ Q +
Sbjct: 41 GVRQDDPEYLKAHNLLSAVQRQQAFQKQ 68
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 132 (51.5 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 48/173 (27%), Positives = 74/173 (42%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYD--PY 569
W +V+DEA +KN + + + L+GTPIQNS+ +LYS F++ D P
Sbjct: 170 WSVLVVDEAHRLKNQNSLLHKTLLEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFPK 229
Query: 570 AVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKV 629
F + I + S +L +L+ +LRR K + LP KT +
Sbjct: 230 EQVGDFVQRYQ-DIEKES-DSASELHKLLQPFLLRRVKA-----EVATELPKKTEVVLYH 282
Query: 630 DFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
S + +YK + +K AF N+L +LR+ DHP L
Sbjct: 283 GMSALQKKYYKAI---LMKDLDAFESEMAKKVKLQNVLS---QLRKCVDHPYL 329
Score = 84 (34.6 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-----DPVELAKYDVVLTTYSI 442
L++CP SVL W E+E P LS ++Y G + D + +++ V+LTTY I
Sbjct: 101 LILCPLSVLSNWTEEMERFAP---GLSCVMYAGDKEERARLQQDLKQESRFHVLLTTYEI 157
Score = 81 (33.6 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF 898
++FSQ T+MLD++++ ++ Y R+DG++ R A+K+F
Sbjct: 368 LLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNF 410
Score = 81 (33.6 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 269 GLLSVNLLKHQKIALAWMLQKETRSLHCLGG-ILADDQGLGKTISIIAL 316
GL + L +Q + W+ R HC G IL D+ GLGKT IAL
Sbjct: 42 GLTGIRLRSYQLEGVNWL----ARCFHCQNGCILGDEMGLGKTCQTIAL 86
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 110 (43.8 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 41/179 (22%), Positives = 84/179 (46%)
Query: 516 VLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYA----- 570
+ DE +KN + + ++ A R L+GTP+QN++ +L S F+ ++
Sbjct: 629 IFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 688
Query: 571 VYKSFYSTIKIPISRNSLHGYKKL---QAVLRAIMLRRTKGTFIDGQPIINLPPKTISLT 627
+ + F S K S++ +++ + +++ +LRR K + LPPK +
Sbjct: 689 IRRMFSSKTK-SADEQSIYEKERIAHAKQIIKPFILRRVKEEVLK-----QLPPKKDQIE 742
Query: 628 KVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEY 686
S+++ Y L + LKK + +N + ++++LR+ +HPLL ++Y
Sbjct: 743 LCAMSEKQEQLYLGL-FNRLKK-----SINNMEKN-TEMCNVMMQLRKMANHPLLHRQY 794
Score = 105 (42.0 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++FSQ+T MLD++E L H +Y RLDG + R + +FNTD ++
Sbjct: 877 VLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDI 925
Score = 92 (37.4 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S++L +QK+ L W+ H L GILAD+ GLGKTI IA +
Sbjct: 497 SLSLKPYQKVGLNWLALVHK---HGLNGILADEMGLGKTIQAIAFL 539
Score = 75 (31.5 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV------ELAKYDVVLTTYS 441
L+V PAS + W RE+ P L VL Y+G + + + +Y+V++TTY+
Sbjct: 552 LIVVPASTIDNWLREVNLWCP---TLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYN 608
>UNIPROTKB|F2Z2R5 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 EMBL:AL035406 HGNC:HGNC:16816
ChiTaRS:CHD5 IPI:IPI00444866 ProteinModelPortal:F2Z2R5 SMR:F2Z2R5
Ensembl:ENST00000496404 ArrayExpress:F2Z2R5 Bgee:F2Z2R5
Uniprot:F2Z2R5
Length = 1225
Score = 183 (69.5 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 50/176 (28%), Positives = 91/176 (51%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W +V+DEA +KN++++ R S + + L+GTP+QN++++L+ FL
Sbjct: 836 LGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTP 895
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + + F IS+ KKL +L MLRR K N+P KT +
Sbjct: 896 ERFNNLEGFLEEFA-DISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----NMPAKTELI 947
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+V+ S+ + +YK + + + F+A G NQ ++L +++ L++ C+HP L
Sbjct: 948 VRVELSQMQKKYYKFILT---RNFEALNSKGGGNQ--VSLLNIMMDLKKCCNHPYL 998
Score = 91 (37.1 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
++FSQ T+MLDL+E+ L +Y R+DG ++ R A+ FN ++ C L
Sbjct: 1044 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 1097
Score = 57 (25.1 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 300 ILADDQGLGKTI-SIIALIQMQRSLQSK 326
ILAD+ GLGKT+ +I+ L + + SK
Sbjct: 722 ILADEMGLGKTVQTIVFLYSLYKEGHSK 749
Score = 56 (24.8 bits), Expect = 6.0e-15, Sum P(3) = 6.0e-15
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 452 SVDEEEADEKNGETYGLSSEFSVNKKRKK 480
S +EE+ +EK+ E+ G S++S NKK+KK
Sbjct: 76 SENEEDLEEKS-ESEG--SDYSPNKKKKK 101
Score = 50 (22.7 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV 428
LV P S + W RE E PD V+ Y G ++ +
Sbjct: 753 LVSAPLSTIINWEREFEMWAPD---FYVVTYTGDKESRSVI 790
Score = 45 (20.9 bits), Expect = 3.5e-15, Sum P(4) = 3.5e-15
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 423 RTKDPVELAKYDVVLTTYSIVT 444
R K V++ K+ V+LT+Y ++T
Sbjct: 810 RMKKEVQI-KFHVLLTSYELIT 830
>GENEDB_PFALCIPARUM|PF08_0126 [details] [associations]
symbol:PF08_0126 "DNA repair protein rad54,
putative" species:5833 "Plasmodium falciparum" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003684 GO:GO:0000724
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR005012 Pfam:PF03344 EMBL:AL844507 HOGENOM:HOG000204521
KO:K10875 OMA:HASKHRV RefSeq:XP_001349480.1
ProteinModelPortal:Q8IAN4 IntAct:Q8IAN4 MINT:MINT-1564728
EnsemblProtists:PF08_0126:mRNA GeneID:2655325 KEGG:pfa:PF08_0126
EuPathDB:PlasmoDB:PF3D7_0803400 Uniprot:Q8IAN4
Length = 1239
Score = 151 (58.2 bits), Expect = 1.2e-15, Sum P(4) = 1.2e-15
Identities = 55/219 (25%), Positives = 103/219 (47%)
Query: 515 VVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK---YDPYAV 571
++ DEA +KN +T+ + +L AK+R LSGTPIQN + + Y+ +D +
Sbjct: 269 IICDEAHRLKNDKTKTYTSIYNLTAKKRLLLSGTPIQNDLGEFYALISLCNPDLFDDINL 328
Query: 572 Y-KSFYSTIKIPISRNSLHGYKKLQA--------VLRAIMLRRTKGTFIDGQPIINLPPK 622
+ K F + I I +++ +++ + + +LRRT P+ L
Sbjct: 329 FRKKFANPILIGRDKDATEKEQEIASERLTELSNITNKFILRRTNNLLSKVLPVKYLINI 388
Query: 623 TISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
I L + +E A Y LK K + T N+ N+L+ + +L + C+HPLL
Sbjct: 389 FIKLNPI----QE-ALYVLF----LKDKKILKNDNTNNK--VNVLINIKKLEKICNHPLL 437
Query: 683 VKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAIC 721
+ D +G+++ + K ++ D++ ++T+ IC
Sbjct: 438 LNVNDIKEIGQVT--LWK-----LIEDVIFEMQTNMKIC 469
Score = 90 (36.7 bits), Expect = 1.2e-15, Sum P(4) = 1.2e-15
Identities = 25/102 (24%), Positives = 52/102 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYD----VVLTTYSI- 442
L++CPAS++ W E+ +P++ ++ + + + +E KYD V++ +Y
Sbjct: 195 LILCPASLINNWNDEISKWIPNRCNVTCVNDNAKEKIVSKLEGFKYDIQSTVLICSYECF 254
Query: 443 -VTNEVPKQPSVDEEEADE----KNGETYGLSSEFSVNKKRK 479
+ NE + S+D DE KN +T +S +++ K++
Sbjct: 255 RINNEFLDKSSIDMIICDEAHRLKNDKTKTYTSIYNLTAKKR 296
Score = 74 (31.1 bits), Expect = 1.2e-15, Sum P(4) = 1.2e-15
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
K ++ S +T+ LD +E ++ ++ RLDG +++ R + + DF ++
Sbjct: 629 KVVIVSNYTQTLDYMEILCKENMYKFVRLDGGINIKKRHKVINDFTHSADI 679
Score = 68 (29.0 bits), Expect = 1.2e-15, Sum P(4) = 1.2e-15
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 255 EDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQ--KETRSLHCLGGILADDQGLGKTIS 312
+D N K+E D +L+ L +HQ+ + ++ + + G ILADD GLGKT+
Sbjct: 117 KDEND-KIEV---DPILAQYLREHQREGVQFVFECLMNIKDDKISGCILADDMGLGKTLQ 172
Query: 313 IIALI 317
I ++
Sbjct: 173 SITVL 177
>UNIPROTKB|Q8IAN4 [details] [associations]
symbol:PF08_0126 "DNA repair protein rad54, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003684 "damaged DNA binding" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003684 GO:GO:0000724
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR005012 Pfam:PF03344 EMBL:AL844507 HOGENOM:HOG000204521
KO:K10875 OMA:HASKHRV RefSeq:XP_001349480.1
ProteinModelPortal:Q8IAN4 IntAct:Q8IAN4 MINT:MINT-1564728
EnsemblProtists:PF08_0126:mRNA GeneID:2655325 KEGG:pfa:PF08_0126
EuPathDB:PlasmoDB:PF3D7_0803400 Uniprot:Q8IAN4
Length = 1239
Score = 151 (58.2 bits), Expect = 1.2e-15, Sum P(4) = 1.2e-15
Identities = 55/219 (25%), Positives = 103/219 (47%)
Query: 515 VVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK---YDPYAV 571
++ DEA +KN +T+ + +L AK+R LSGTPIQN + + Y+ +D +
Sbjct: 269 IICDEAHRLKNDKTKTYTSIYNLTAKKRLLLSGTPIQNDLGEFYALISLCNPDLFDDINL 328
Query: 572 Y-KSFYSTIKIPISRNSLHGYKKLQA--------VLRAIMLRRTKGTFIDGQPIINLPPK 622
+ K F + I I +++ +++ + + +LRRT P+ L
Sbjct: 329 FRKKFANPILIGRDKDATEKEQEIASERLTELSNITNKFILRRTNNLLSKVLPVKYLINI 388
Query: 623 TISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
I L + +E A Y LK K + T N+ N+L+ + +L + C+HPLL
Sbjct: 389 FIKLNPI----QE-ALYVLF----LKDKKILKNDNTNNK--VNVLINIKKLEKICNHPLL 437
Query: 683 VKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAIC 721
+ D +G+++ + K ++ D++ ++T+ IC
Sbjct: 438 LNVNDIKEIGQVT--LWK-----LIEDVIFEMQTNMKIC 469
Score = 90 (36.7 bits), Expect = 1.2e-15, Sum P(4) = 1.2e-15
Identities = 25/102 (24%), Positives = 52/102 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYD----VVLTTYSI- 442
L++CPAS++ W E+ +P++ ++ + + + +E KYD V++ +Y
Sbjct: 195 LILCPASLINNWNDEISKWIPNRCNVTCVNDNAKEKIVSKLEGFKYDIQSTVLICSYECF 254
Query: 443 -VTNEVPKQPSVDEEEADE----KNGETYGLSSEFSVNKKRK 479
+ NE + S+D DE KN +T +S +++ K++
Sbjct: 255 RINNEFLDKSSIDMIICDEAHRLKNDKTKTYTSIYNLTAKKR 296
Score = 74 (31.1 bits), Expect = 1.2e-15, Sum P(4) = 1.2e-15
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
K ++ S +T+ LD +E ++ ++ RLDG +++ R + + DF ++
Sbjct: 629 KVVIVSNYTQTLDYMEILCKENMYKFVRLDGGINIKKRHKVINDFTHSADI 679
Score = 68 (29.0 bits), Expect = 1.2e-15, Sum P(4) = 1.2e-15
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 255 EDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQ--KETRSLHCLGGILADDQGLGKTIS 312
+D N K+E D +L+ L +HQ+ + ++ + + G ILADD GLGKT+
Sbjct: 117 KDEND-KIEV---DPILAQYLREHQREGVQFVFECLMNIKDDKISGCILADDMGLGKTLQ 172
Query: 313 IIALI 317
I ++
Sbjct: 173 SITVL 177
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 177 (67.4 bits), Expect = 1.2e-15, Sum P(4) = 1.2e-15
Identities = 52/177 (29%), Positives = 92/177 (51%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +V+DEA IKN +++++ ++ R L+GTP+QN++ +L++ FL D
Sbjct: 281 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 340
Query: 569 YAVYKSFYSTIKIPISRNSLHGYK---KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+ F S ++N L K +L AVL+ +LRR K T ++ +LPPK
Sbjct: 341 FNSADDFDSWFD---TKNCLGDQKLVERLHAVLKPFLLRRIK-TDVEK----SLPPKKEI 392
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ SK + +Y K+ +K +G +++ +L +L++LR+ C+HP L
Sbjct: 393 KIYLGLSKMQREWYTKI---LMKDIDVLNSSGKMDK--MRLLNILMQLRKCCNHPYL 444
Score = 70 (29.7 bits), Expect = 1.2e-15, Sum P(4) = 1.2e-15
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ IAL+
Sbjct: 162 LRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 201
Score = 67 (28.6 bits), Expect = 1.2e-15, Sum P(4) = 1.2e-15
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVK 896
++FSQ TR+LD++E+ +Y RLDG P +R K
Sbjct: 485 LIFSQMTRLLDILEDYCMWRGYEYCRLDG--QTPHEEREDK 523
Score = 63 (27.2 bits), Expect = 1.2e-15, Sum P(4) = 1.2e-15
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRT---KDPVELAKYDVVLTTYSI 442
+V+ P S L W E + VP +L V+ + G +R +D + ++DV +T+Y +
Sbjct: 215 MVLVPKSTLHNWMNEFKRWVP---SLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 271
Query: 443 VTNE 446
V E
Sbjct: 272 VIKE 275
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 149 (57.5 bits), Expect = 1.3e-15, Sum P(4) = 1.3e-15
Identities = 49/176 (27%), Positives = 85/176 (48%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +V+DEA IKN +++++ + R ++GTP+QN++ +L++ FL D
Sbjct: 247 KFNWRYLVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQNNLHELWALLNFLLPDV 306
Query: 569 YAVYKSF--YSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + F + + ++L +L AVL+ +LRR K ++ + L PK
Sbjct: 307 FNSSEDFDEWFNTNTCLGDDAL--ITRLHAVLKPFLLRRLKAE-VEKR----LKPKKEMK 359
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
V SK + +Y K+ LK AG V + +LM +LR+ +HP L
Sbjct: 360 IFVGLSKMQRDWYTKV---LLKDIDVVNGAGKVEKMRLQNILM--QLRKCTNHPYL 410
Score = 94 (38.1 bits), Expect = 1.3e-15, Sum P(4) = 1.3e-15
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD 901
++FSQ TRMLD++E+ + Y RLDG R+R +++FN D
Sbjct: 451 LIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFNMD 496
Score = 75 (31.5 bits), Expect = 1.3e-15, Sum P(4) = 1.3e-15
Identities = 23/89 (25%), Positives = 49/89 (55%)
Query: 245 DERLIYQ-AALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILAD 303
DE L+ + +A +++ + +A+ P + S + +Q L WM+ ++ GILAD
Sbjct: 100 DEELLAEDSATKEIF--RFDAS-PAYIKSGEMRDYQIRGLNWMISLYENGIN---GILAD 153
Query: 304 DQGLGKTISIIALIQMQRSLQSKSKTEVL 332
+ GLGKT+ I+L+ + ++++ ++
Sbjct: 154 EMGLGKTLQTISLLGYLKHFKNQAGPHIV 182
Score = 61 (26.5 bits), Expect = 1.3e-15, Sum P(4) = 1.3e-15
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT--KDPVELAKYDVVLTTYSIVTN 445
+V+ P S L+ W E + P A+ ++ T +D + ++DV +T+Y +
Sbjct: 181 IVIVPKSTLQNWVNEFKKWCPSLRAVCLIGDQDTRNTFIRDVLMPGEWDVCVTSYEMCIR 240
Query: 446 E 446
E
Sbjct: 241 E 241
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 177 (67.4 bits), Expect = 1.4e-15, Sum P(4) = 1.4e-15
Identities = 53/177 (29%), Positives = 89/177 (50%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +V+DEA IKN +++++ + R L+GTP+QN++ +L++ FL D
Sbjct: 284 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDV 343
Query: 569 YAVYKSFYSTIKIPISRNSLHGYK---KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+ + F S + N L K +L VLR +LRR K D + +LPPK
Sbjct: 344 FNSSEDFDSWFD---TNNCLGDQKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEV 395
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
V SK + +Y ++ +K AG +++ +L +L++LR+ C+HP L
Sbjct: 396 KIYVGLSKMQREWYTRI---LMKDIDILNSAGKLDK--MRLLNILMQLRKCCNHPYL 447
Score = 72 (30.4 bits), Expect = 1.4e-15, Sum P(4) = 1.4e-15
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++FSQ TR+LD++E+ +Y RLDG R ++ +N
Sbjct: 488 LIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQASINAYN 531
Score = 69 (29.3 bits), Expect = 1.4e-15, Sum P(4) = 1.4e-15
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ I+L+
Sbjct: 165 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 204
Score = 59 (25.8 bits), Expect = 1.4e-15, Sum P(4) = 1.4e-15
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT---KDPVELAKYDVVLTTYSIVT 444
+V+ P S L W E + VP A+ LI R +D + ++DV +T+Y ++
Sbjct: 218 MVLVPKSTLHNWMNEFKRWVPTLRAVC-LIGDKDQRAAFVRDVLLPGEWDVCVTSYEMLI 276
Query: 445 NE 446
E
Sbjct: 277 KE 278
Score = 44 (20.5 bits), Expect = 4.4e-13, Sum P(4) = 4.4e-13
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 179 PSTVNSKGYIRDYYVKKNDDDIMMYEG--NRILPSSLMHGKSV 219
PS V G +RDY V+ + I +YE N IL + GK++
Sbjct: 157 PSYVKW-GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTL 198
>UNIPROTKB|Q3L8U1 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid metabolic
process" evidence=TAS] [GO:0044281 "small molecule metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_111217 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0044281
GO:GO:0003677 GO:GO:0044255 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:AY243500 EMBL:DQ333316
EMBL:AY647157 EMBL:AC007906 EMBL:AC079416 EMBL:BC140815
EMBL:AB002306 EMBL:AF150735 EMBL:AK022582 IPI:IPI00383105
IPI:IPI00746795 IPI:IPI00914955 RefSeq:NP_079410.4 UniGene:Hs.59159
UniGene:Hs.622347 ProteinModelPortal:Q3L8U1 SMR:Q3L8U1
IntAct:Q3L8U1 STRING:Q3L8U1 PhosphoSite:Q3L8U1 DMDM:215273951
PaxDb:Q3L8U1 PRIDE:Q3L8U1 Ensembl:ENST00000398510
Ensembl:ENST00000447540 Ensembl:ENST00000564845
Ensembl:ENST00000566029 GeneID:80205 KEGG:hsa:80205 UCSC:uc002egy.3
UCSC:uc002ehb.3 UCSC:uc002ehc.3 CTD:80205 GeneCards:GC16P053041
HGNC:HGNC:25701 neXtProt:NX_Q3L8U1 PharmGKB:PA128394727
InParanoid:Q3L8U1 KO:K14438 OMA:MWGHQTA GenomeRNAi:80205
NextBio:70576 ArrayExpress:Q3L8U1 Bgee:Q3L8U1 CleanEx:HS_CHD9
Genevestigator:Q3L8U1 GermOnline:ENSG00000177200 Uniprot:Q3L8U1
Length = 2897
Score = 206 (77.6 bits), Expect = 1.5e-15, Sum P(4) = 1.5e-15
Identities = 51/182 (28%), Positives = 95/182 (52%)
Query: 503 GCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFR 562
GCG L + W V++DEA +KN ++ + + + L+GTP+QN++++L+S
Sbjct: 982 GCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLH 1041
Query: 563 FLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPK 622
FL+ + +F + + +KLQA+L+ +MLRR K D + L PK
Sbjct: 1042 FLEPLRFPSESTFMQEFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--KLAPK 1093
Query: 623 TISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
++ +V+ + + +Y+ + L+K +F G N N++ ++ LR+ C+HP L
Sbjct: 1094 EETIIEVELTNIQKKYYRAI----LEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYL 1149
Query: 683 VK 684
+K
Sbjct: 1150 IK 1151
Score = 71 (30.1 bits), Expect = 1.5e-15, Sum P(4) = 1.5e-15
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G K ++FSQ R LD++E+ L Y R+DG + R A+ F+
Sbjct: 1197 GGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFS 1245
Score = 64 (27.6 bits), Expect = 1.5e-15, Sum P(4) = 1.5e-15
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L ++Q L W+L +C ILAD+ GLGKTI I +
Sbjct: 860 LREYQLEGLNWLLFNWYNRRNC---ILADEMGLGKTIQSITFL 899
Score = 54 (24.1 bits), Expect = 1.5e-15, Sum P(4) = 1.5e-15
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE 429
L++ P S + W RE ++V++YHG ++ ++
Sbjct: 912 LIIAPLSTIANWEREFRTWTD----INVVVYHGSLISRQMIQ 949
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 177 (67.4 bits), Expect = 1.5e-15, Sum P(4) = 1.5e-15
Identities = 52/177 (29%), Positives = 92/177 (51%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +V+DEA IKN +++++ ++ R L+GTP+QN++ +L++ FL D
Sbjct: 302 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 361
Query: 569 YAVYKSFYSTIKIPISRNSLHGYK---KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+ F S ++N L K +L AVL+ +LRR K T ++ +LPPK
Sbjct: 362 FNSADDFDSWFD---TKNCLGDQKLVERLHAVLKPFLLRRIK-TDVEK----SLPPKKEI 413
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ SK + +Y K+ +K +G +++ +L +L++LR+ C+HP L
Sbjct: 414 KIYLGLSKMQREWYTKI---LMKDIDVLNSSGKMDK--MRLLNILMQLRKCCNHPYL 465
Score = 70 (29.7 bits), Expect = 1.5e-15, Sum P(4) = 1.5e-15
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ IAL+
Sbjct: 183 LRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 222
Score = 67 (28.6 bits), Expect = 1.5e-15, Sum P(4) = 1.5e-15
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVK 896
++FSQ TR+LD++E+ +Y RLDG P +R K
Sbjct: 506 LIFSQMTRLLDILEDYCMWRGYEYCRLDG--QTPHEEREDK 544
Score = 63 (27.2 bits), Expect = 1.5e-15, Sum P(4) = 1.5e-15
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRT---KDPVELAKYDVVLTTYSI 442
+V+ P S L W E + VP +L V+ + G +R +D + ++DV +T+Y +
Sbjct: 236 MVLVPKSTLHNWMNEFKRWVP---SLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEM 292
Query: 443 VTNE 446
V E
Sbjct: 293 VIKE 296
>UNIPROTKB|E2RDK8 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AAEX03001603
EMBL:AAEX03001604 EMBL:AAEX03001605 Ensembl:ENSCAFT00000015413
Uniprot:E2RDK8
Length = 2902
Score = 206 (77.6 bits), Expect = 1.5e-15, Sum P(4) = 1.5e-15
Identities = 51/182 (28%), Positives = 95/182 (52%)
Query: 503 GCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFR 562
GCG L + W V++DEA +KN ++ + + + L+GTP+QN++++L+S
Sbjct: 984 GCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLH 1043
Query: 563 FLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPK 622
FL+ + +F + + +KLQA+L+ +MLRR K D + L PK
Sbjct: 1044 FLEPLRFPSESTFMQEFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--KLAPK 1095
Query: 623 TISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
++ +V+ + + +Y+ + L+K +F G N N++ ++ LR+ C+HP L
Sbjct: 1096 EETIIEVELTNIQKKYYRAI----LEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYL 1151
Query: 683 VK 684
+K
Sbjct: 1152 IK 1153
Score = 71 (30.1 bits), Expect = 1.5e-15, Sum P(4) = 1.5e-15
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G K ++FSQ R LD++E+ L Y R+DG + R A+ F+
Sbjct: 1199 GGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFS 1247
Score = 64 (27.6 bits), Expect = 1.5e-15, Sum P(4) = 1.5e-15
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L ++Q L W+L +C ILAD+ GLGKTI I +
Sbjct: 862 LREYQLEGLNWLLFNWYNRRNC---ILADEMGLGKTIQSITFL 901
Score = 54 (24.1 bits), Expect = 1.5e-15, Sum P(4) = 1.5e-15
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE 429
L++ P S + W RE ++V++YHG ++ ++
Sbjct: 914 LIIAPLSTIANWEREFRTWTD----INVVVYHGSLISRQMIQ 951
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 179 (68.1 bits), Expect = 1.6e-15, Sum P(4) = 1.6e-15
Identities = 51/177 (28%), Positives = 90/177 (50%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L K W +++DEA IKN + +A+ ++ R ++GTP+QN+I +L++ FL
Sbjct: 303 LKKFAWEYIIIDEAHRIKNEESSLAQVIRLFNSRNRLLITGTPLQNNIHELWALLNFLLP 362
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
D + ++F ++S ++L VLR +LRR K D + + LP K ++L
Sbjct: 363 DVFGDSEAFDQWFSGE-GQDSDTVVQQLHRVLRPFLLRRVKA---DVEKSL-LPKKEVNL 417
Query: 627 -TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
K+ + W + K LE D A A ++ +L ++++LR+ C+HP L
Sbjct: 418 YLKMTEMQRTW-YQKILEKD----IDAVNGANGKRESKTRLLNIVMQLRKCCNHPYL 469
Score = 68 (29.0 bits), Expect = 1.6e-15, Sum P(4) = 1.6e-15
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 278 HQKIALAWMLQKETRSLHCLG--GILADDQGLGKTISIIALIQMQRSL 323
+Q L W++ SLH G GILAD+ GLGKT+ I+ + R +
Sbjct: 189 YQIAGLNWLI-----SLHENGISGILADEMGLGKTLQTISFLGYLRHI 231
Score = 67 (28.6 bits), Expect = 1.6e-15, Sum P(4) = 1.6e-15
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++FSQ +R+LD++E+ +Y R+DG + R A+ ++N
Sbjct: 510 LIFSQMSRVLDILEDYCVFREYKYSRIDGGTAHEDRIAAIDEYN 553
Score = 64 (27.6 bits), Expect = 1.6e-15, Sum P(4) = 1.6e-15
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK-----YDVVLTTYSI 442
LV+ P S L W RE P+ ++VL+ G + + + +DV +T+Y +
Sbjct: 239 LVIVPKSTLDNWKREFGKWTPE---VNVLVLQGAKEERAALIAERLVDESFDVCITSYEM 295
Query: 443 VTNE 446
+ E
Sbjct: 296 ILRE 299
>ZFIN|ZDB-GENE-030131-497 [details] [associations]
symbol:chd9 "chromodomain helicase DNA binding
protein 9" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-030131-497
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
EMBL:CR318585 EMBL:CU464124 EMBL:FP015866 IPI:IPI00972236
Ensembl:ENSDART00000027807 Bgee:E7F7W5 Uniprot:E7F7W5
Length = 2948
Score = 201 (75.8 bits), Expect = 1.7e-15, Sum P(4) = 1.7e-15
Identities = 51/182 (28%), Positives = 94/182 (51%)
Query: 503 GCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFR 562
GC L + W V++DEA +KN ++ + + + L+GTP+QN++++L+S
Sbjct: 1035 GCPELNAIDWRCVIIDEAHRLKNKNCKLLEGFKLMSLEHKVLLTGTPLQNTVEELFSLLH 1094
Query: 563 FLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPK 622
FL+ + +F + + +KLQA+L+ +MLRR K D + L PK
Sbjct: 1095 FLEPTRFPSENTFMQEFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--KLAPK 1146
Query: 623 TISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
++ +V+ + + +Y+ + L+K +F G N N+L ++ LR+ C+HP L
Sbjct: 1147 EETIIEVELTNIQKKYYRAI----LEKNFSFLAKGAGQANVPNLLNTMMELRKCCNHPYL 1202
Query: 683 VK 684
+K
Sbjct: 1203 IK 1204
Score = 77 (32.2 bits), Expect = 1.7e-15, Sum P(4) = 1.7e-15
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G K ++FSQ R LD++E+ L Q Y R+DG + R A+ F+
Sbjct: 1250 GGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 1298
Score = 62 (26.9 bits), Expect = 1.7e-15, Sum P(4) = 1.7e-15
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQ 318
+L +Q + W+L +C ILAD+ GLGKTI I ++
Sbjct: 912 SLRDYQLEGVNWLLFNWYNRRNC---ILADEMGLGKTIQSITFLE 953
Score = 55 (24.4 bits), Expect = 1.7e-15, Sum P(4) = 1.7e-15
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHG 420
L++ P S + W RE L+V++YHG
Sbjct: 965 LIIAPLSTIANWEREFRTWTH----LNVIVYHG 993
>TAIR|locus:2024198 [details] [associations]
symbol:SWI2 "switch 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016020 "membrane"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0016020 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HGNRKDN
IPI:IPI00529418 RefSeq:NP_171871.2 UniGene:At.42525
UniGene:At.42526 ProteinModelPortal:F4I2H2 SMR:F4I2H2 PRIDE:F4I2H2
EnsemblPlants:AT1G03750.1 GeneID:839417 KEGG:ath:AT1G03750
Uniprot:F4I2H2
Length = 862
Score = 128 (50.1 bits), Expect = 1.9e-15, Sum P(4) = 1.9e-15
Identities = 36/116 (31%), Positives = 62/116 (53%)
Query: 505 GP-LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
GP L+ + W V+ DEA +KN ++++ AC ++ K+R L+GT +QN I +L++ F +
Sbjct: 260 GPVLSGINWEIVIADEAHRLKNEKSKLYEACLEIKTKKRIGLTGTVMQNKISELFNLFEW 319
Query: 564 LKYDPYAV---YKSFYST-IKI------PISRNSLHGYKK--LQAVLRAIMLRRTK 607
+ ++ FY +K+ P + +K L ++LR MLRRTK
Sbjct: 320 VAPGSLGTREHFRDFYDEPLKLGQRATAPERFVQIADKRKQHLGSLLRKYMLRRTK 375
Score = 97 (39.2 bits), Expect = 1.9e-15, Sum P(4) = 1.9e-15
Identities = 33/115 (28%), Positives = 53/115 (46%)
Query: 787 SPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHS- 845
+P D P K D E++S+ T +D+L ++ S +++ D+ A+
Sbjct: 483 NPKDEPEKQKK---DAEFVSTVFGTDIDLLGG---ISASKSFMDLSDVKHCGKMRALEKL 536
Query: 846 -KSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
S I K ++FS RMLD++E L + + RLDG+ R V DFN
Sbjct: 537 MASWISKGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVDDFN 591
Score = 83 (34.3 bits), Expect = 1.9e-15, Sum P(4) = 1.9e-15
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 272 SVN--LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S+N LL+HQ+ + +M + H GGIL DD GLGKTI IA +
Sbjct: 134 SINCRLLEHQREGVKFMYNLYKNN-H--GGILGDDMGLGKTIQTIAFL 178
Score = 67 (28.6 bits), Expect = 1.9e-15, Sum P(4) = 1.9e-15
Identities = 18/77 (23%), Positives = 37/77 (48%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK--DPVELAKYDVVLTTYSIVTN 445
L++CP+S++ W E + V +YHG +R + ++ +V++T++
Sbjct: 202 LIICPSSIIHNWESEFSRWA---SFFKVSVYHGSNRDMILEKLKARGVEVLVTSFDTFRI 258
Query: 446 EVPKQPSVDEEE--ADE 460
+ P ++ E ADE
Sbjct: 259 QGPVLSGINWEIVIADE 275
>MGI|MGI:1924001 [details] [associations]
symbol:Chd9 "chromodomain helicase DNA binding protein 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
MGI:MGI:1924001 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077 CTD:80205
KO:K14438 OMA:MWGHQTA EMBL:DQ127229 EMBL:AK034446 EMBL:AK039562
EMBL:AK084000 EMBL:AB093226 EMBL:BC052896 IPI:IPI00229650
IPI:IPI00758139 RefSeq:NP_796198.1 UniGene:Mm.100615
ProteinModelPortal:Q8BYH8 SMR:Q8BYH8 STRING:Q8BYH8
PhosphoSite:Q8BYH8 PaxDb:Q8BYH8 PRIDE:Q8BYH8
Ensembl:ENSMUST00000048665 Ensembl:ENSMUST00000109614 GeneID:109151
KEGG:mmu:109151 UCSC:uc009msf.2 UCSC:uc009msi.2 InParanoid:Q8BYH8
OrthoDB:EOG4548XQ ChiTaRS:CHD9 NextBio:361700 Bgee:Q8BYH8
CleanEx:MM_CHD9 Genevestigator:Q8BYH8 Uniprot:Q8BYH8
Length = 2885
Score = 207 (77.9 bits), Expect = 2.1e-15, Sum P(5) = 2.1e-15
Identities = 51/182 (28%), Positives = 95/182 (52%)
Query: 503 GCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFR 562
GCG L + W V++DEA +KN ++ + + + L+GTP+QN++++L+S
Sbjct: 981 GCGELNAIDWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLH 1040
Query: 563 FLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPK 622
FL+ + +F + + +KLQA+L+ +MLRR K D + L PK
Sbjct: 1041 FLEPLRFPSESTFMQEFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--KLAPK 1092
Query: 623 TISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
++ +V+ + + +Y+ + L+K +F G N N++ ++ LR+ C+HP L
Sbjct: 1093 EETIIEVELTNIQKKYYRAI----LEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYL 1148
Query: 683 VK 684
+K
Sbjct: 1149 IK 1150
Score = 71 (30.1 bits), Expect = 2.1e-15, Sum P(5) = 2.1e-15
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G K ++FSQ R LD++E+ L Y R+DG + R A+ F+
Sbjct: 1196 GGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFS 1244
Score = 64 (27.6 bits), Expect = 2.1e-15, Sum P(5) = 2.1e-15
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L ++Q L W+L +C ILAD+ GLGKTI I +
Sbjct: 859 LREYQLEGLNWLLFNWYNRRNC---ILADEMGLGKTIQSITFL 898
Score = 54 (24.1 bits), Expect = 2.1e-15, Sum P(5) = 2.1e-15
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE 429
L++ P S + W RE ++V++YHG ++ ++
Sbjct: 911 LIIAPLSTIANWEREFRTWTD----INVVVYHGSLISRQMIQ 948
Score = 42 (19.8 bits), Expect = 2.1e-15, Sum P(5) = 2.1e-15
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 204 EGNRILPSSLMHGKSVSMTQFGGPSDLAYRSG 235
EGN PS M SVS +Q PS ++ SG
Sbjct: 247 EGNYNRPSPSMTSCSVSNSQ-QFPSHYSFSSG 277
>UNIPROTKB|F1NAD2 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0000729 "DNA double-strand
break processing" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051304 "chromosome
separation" evidence=IEA] [GO:0070932 "histone H3 deacetylation"
evidence=IEA] [GO:0070933 "histone H4 deacetylation" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000018 GeneTree:ENSGT00630000089890
GO:GO:0051304 OMA:KNQRGIQ EMBL:AADN02016061 EMBL:AADN02016062
EMBL:AADN02016063 EMBL:AADN02016064 EMBL:AADN02016065
EMBL:AADN02016066 EMBL:AADN02016067 IPI:IPI00583150
Ensembl:ENSGALT00000016936 Uniprot:F1NAD2
Length = 963
Score = 125 (49.1 bits), Expect = 2.1e-15, Sum P(4) = 2.1e-15
Identities = 47/193 (24%), Positives = 86/193 (44%)
Query: 516 VLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYA----- 570
+ DE +KN + + + AK R L+GTP+QN++ +L S F+ ++
Sbjct: 563 IFDEGHMLKNMSSVRYQQLMRINAKHRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 622
Query: 571 VYKSFYSTIKIPISRNSLHGYKKLQA--VLRAIMLRRTKGTFIDGQPIINLPPKTISLTK 628
+ + F S K +++ + A +++ +LRR K + LPPK +
Sbjct: 623 IRRMFSSKAKTAEEQSTYEKERIAHAKQIIKPFILRRVKDEVLK-----QLPPKKDHIEL 677
Query: 629 VDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEY-D 687
S+++ ++L D L K K N + N ++ +LR+ +HPLL + Y
Sbjct: 678 CAMSEKQ----EQLYCDLLNKLKKTMKGNEKNSDMGNAMM---QLRKMANHPLLHRHYYT 730
Query: 688 FDSVGKISGEMAK 700
D + +S M K
Sbjct: 731 ADKLKTMSKLMLK 743
Score = 92 (37.4 bits), Expect = 2.1e-15, Sum P(4) = 2.1e-15
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S+ L +QKI L W+ H L GILAD+ GLGKTI IA +
Sbjct: 430 SLELKPYQKIGLNWLALLHK---HGLNGILADEMGLGKTIQAIAFL 472
Score = 89 (36.4 bits), Expect = 2.1e-15, Sum P(4) = 2.1e-15
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++FSQ+T +LD++E L +Y RLDG + R + +FNTD ++
Sbjct: 811 VLFSQFTMVLDILEVFLKHWQHRYIRLDGKTQISDRIHLIDEFNTDMDI 859
Score = 71 (30.1 bits), Expect = 2.1e-15, Sum P(4) = 2.1e-15
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS-------RTKDPVELAKYDVVLTTY 440
L+V PAS L W RE+ P+ L+VL Y+ GS R + ++V++TTY
Sbjct: 485 LIVVPASTLDNWIREVNLWCPE---LNVLFYYVGSQEDRKHLRADISNRVVDFNVIVTTY 541
Query: 441 S 441
+
Sbjct: 542 N 542
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 168 (64.2 bits), Expect = 2.1e-15, Sum P(3) = 2.1e-15
Identities = 60/220 (27%), Positives = 101/220 (45%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARAC-CSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
L K+ W +++DE +KNH +A+ R KRR L+GTPIQNS+ +L+S FL
Sbjct: 502 LKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFLL 561
Query: 566 YDPYAVYKSFYSTIKIPISR---------NSLHGYKKLQAVLRAIMLRRTKGTFIDGQPI 616
+ +F P + L +L V+R +LRR K + +
Sbjct: 562 PHIFNSIHNFEEWFNTPFAECGSASLTDEEELLIINRLHHVIRPFLLRRKKS---EVEKF 618
Query: 617 INLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQA 676
LP KT + K D S + +YK++ + +G N ++ + ++LR+
Sbjct: 619 --LPGKTQVILKCDMSAWQKLYYKQVTDVG----RVGLHSG--NGKSKSLQNLTMQLRKC 670
Query: 677 CDHPLLVKEYDFDSVGKISGEMAKRLPRDMLID-LLSRLE 715
C+HP L D++ K E+ + + L+D LL +L+
Sbjct: 671 CNHPYLFVGADYNMCKK--PEIVRASGKFELLDRLLPKLK 708
Score = 83 (34.3 bits), Expect = 2.1e-15, Sum P(3) = 2.1e-15
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++FSQ TR++DL+E L+ + Y RLDG+ R +K FN
Sbjct: 715 LLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFN 758
Score = 82 (33.9 bits), Expect = 2.1e-15, Sum P(3) = 2.1e-15
Identities = 26/68 (38%), Positives = 33/68 (48%)
Query: 250 YQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGK 309
+ A+ + Q KV P L L +Q L WM+ + GILAD+ GLGK
Sbjct: 363 FNLAIHSI-QEKVTKQ-PSLLQGGELRSYQLEGLQWMVSLYNNDYN---GILADEMGLGK 417
Query: 310 TISIIALI 317
TI IALI
Sbjct: 418 TIQTIALI 425
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 177 (67.4 bits), Expect = 2.2e-15, Sum P(4) = 2.2e-15
Identities = 52/177 (29%), Positives = 92/177 (51%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +V+DEA IKN +++++ ++ R L+GTP+QN++ +L++ FL D
Sbjct: 282 KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDV 341
Query: 569 YAVYKSFYSTIKIPISRNSLHGYK---KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+ F S ++N L K +L AVL+ +LRR K T ++ +LPPK
Sbjct: 342 FNSADDFDSWFD---TKNCLGDQKLVERLHAVLKPFLLRRIK-TDVEK----SLPPKKEI 393
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ SK + +Y K+ +K +G +++ +L +L++LR+ C+HP L
Sbjct: 394 KIYLGLSKMQREWYTKI---LMKDIDVLNSSGKMDK--MRLLNILMQLRKCCNHPYL 445
Score = 70 (29.7 bits), Expect = 2.2e-15, Sum P(4) = 2.2e-15
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ IAL+
Sbjct: 163 LRDYQIRGLNWLISLYENGVN---GILADEMGLGKTLQTIALL 202
Score = 66 (28.3 bits), Expect = 2.2e-15, Sum P(4) = 2.2e-15
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDG 884
++FSQ TR+LD++E+ +Y RLDG
Sbjct: 486 LIFSQMTRLLDILEDYCMWRGYEYCRLDG 514
Score = 62 (26.9 bits), Expect = 2.2e-15, Sum P(4) = 2.2e-15
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-----DPVELAKYDVVLTTYSI 442
+V+ P S L W E + VP +L V+ + G + D + ++DV +T+Y +
Sbjct: 216 MVLVPKSTLHNWMNEFKRWVP---SLRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEM 272
Query: 443 VTNE 446
V E
Sbjct: 273 VIKE 276
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 109 (43.4 bits), Expect = 2.2e-15, Sum P(4) = 2.2e-15
Identities = 41/179 (22%), Positives = 84/179 (46%)
Query: 516 VLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYA----- 570
+ DE +KN + + ++ A R L+GTP+QN++ +L S F+ ++
Sbjct: 626 IFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 685
Query: 571 VYKSFYSTIKIPISRNSLHGYKKL---QAVLRAIMLRRTKGTFIDGQPIINLPPKTISLT 627
+ + F S K S++ +++ + +++ +LRR K + LPPK +
Sbjct: 686 IRRMFSSKTK-SADEQSIYEKERIAHAKQIIKPFILRRVKEEVLK-----QLPPKKDRIE 739
Query: 628 KVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEY 686
S+++ Y L + LKK + +N + ++++LR+ +HPLL ++Y
Sbjct: 740 LCAMSEKQEQLYLGL-FNRLKK-----SINNLEKN-TEMCNVMMQLRKMANHPLLHRQY 791
Score = 105 (42.0 bits), Expect = 2.2e-15, Sum P(4) = 2.2e-15
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++FSQ+T MLD++E L H +Y RLDG + R + +FNTD ++
Sbjct: 874 VLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDI 922
Score = 92 (37.4 bits), Expect = 2.2e-15, Sum P(4) = 2.2e-15
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
S++L +QK+ L W+ H L GILAD+ GLGKTI IA +
Sbjct: 494 SLSLKPYQKVGLNWLALVHK---HGLNGILADEMGLGKTIQAIAFL 536
Score = 73 (30.8 bits), Expect = 2.2e-15, Sum P(4) = 2.2e-15
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL------AKYDVVLTTYS 441
L+V PAS + W RE+ P L VL Y+G + + Y+V++TTY+
Sbjct: 549 LIVVPASTIDNWLREVNLWCP---TLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYN 605
Score = 41 (19.5 bits), Expect = 2.7e-07, Sum P(3) = 2.7e-07
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 445 NEVPKQPSVDEEEAD-EKNGETYGLSSEFSV------NKKRKK 480
+EVP V + KN L +FS+ NKKRKK
Sbjct: 304 SEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKK 346
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 176 (67.0 bits), Expect = 2.2e-15, Sum P(4) = 2.2e-15
Identities = 50/174 (28%), Positives = 87/174 (50%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +V+DEA IKN +++++ + R L+GTP+QN++ +L++ FL D
Sbjct: 282 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDV 341
Query: 569 YAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTK 628
+ + F + ++L VLR +LRR K D + + LP K I +
Sbjct: 342 FNSSEDFDAWFDTNNCLGDTKLVERLHTVLRPFLLRRIKA---DVEKSL-LPKKEIKIY- 396
Query: 629 VDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
V SK + +Y K+ +K AG +++ +L +L++LR+ C+HP L
Sbjct: 397 VGLSKMQREWYTKI---LMKDIDILNSAGKMDK--MRLLNVLMQLRKCCNHPYL 445
Score = 70 (29.7 bits), Expect = 2.2e-15, Sum P(4) = 2.2e-15
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
P + + L +Q L W++ ++ GILAD+ GLGKT+ I+L+
Sbjct: 155 PSYVKTGKLRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 202
Score = 69 (29.3 bits), Expect = 2.2e-15, Sum P(4) = 2.2e-15
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++FSQ TR+LD++E+ Y RLDG R ++ FN
Sbjct: 486 LIFSQMTRVLDILEDYCMWRNYGYCRLDGQTPHEERQISINAFN 529
Score = 60 (26.2 bits), Expect = 2.2e-15, Sum P(4) = 2.2e-15
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT---KDPVELAKYDVVLTTYSIVT 444
+V+ P S L W E + VP A+ LI RT +D + ++DV +T+Y ++
Sbjct: 216 MVLVPKSTLYNWMNEFKRWVPSLKAVC-LIGDREERTAFIRDTLLPGEWDVCVTSYEMLI 274
Query: 445 NE 446
E
Sbjct: 275 IE 276
Score = 48 (22.0 bits), Expect = 3.5e-13, Sum P(4) = 3.5e-13
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 179 PSTVNSKGYIRDYYVKKNDDDIMMYEG--NRILPSSLMHGKSV 219
PS V + G +RDY V+ + I +YE N IL + GK++
Sbjct: 155 PSYVKT-GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTL 196
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 183 (69.5 bits), Expect = 2.4e-15, Sum P(4) = 2.4e-15
Identities = 50/176 (28%), Positives = 91/176 (51%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W +V+DEA +KN++++ R S + + L+GTP+QN++++L+ FL
Sbjct: 768 LGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTP 827
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + + F IS+ KKL +L MLRR K N+P KT +
Sbjct: 828 ERFNNLEGFLEEFA-DISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----NMPAKTELI 879
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+V+ S+ + +YK + + + F+A G NQ ++L +++ L++ C+HP L
Sbjct: 880 VRVELSQMQKKYYKFILT---RNFEALNSKGGGNQ--VSLLNIMMDLKKCCNHPYL 930
Score = 94 (38.1 bits), Expect = 2.4e-15, Sum P(4) = 2.4e-15
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 850 EGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
+G + ++FSQ T+MLDL+E+ L +Y R+DG ++ R A+ FN ++ C L
Sbjct: 970 DGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 1029
Score = 58 (25.5 bits), Expect = 2.4e-15, Sum P(4) = 2.4e-15
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 300 ILADDQGLGKTISIIALIQMQRSLQSKSK 328
ILAD+ GLGKT+ I + Q SK
Sbjct: 653 ILADEMGLGKTVQTIVFLYSLYKEQGHSK 681
Score = 55 (24.4 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 452 SVDEEEADEKNGETYGLSSEFSVNKKRKK 480
S ++EE +EK+ E+ G S++S NKK+KK
Sbjct: 7 SDNDEEIEEKS-ESEG--SDYSPNKKKKK 32
Score = 50 (22.7 bits), Expect = 2.4e-15, Sum P(4) = 2.4e-15
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV 428
LV P S + W RE E PD V+ Y G ++ +
Sbjct: 685 LVSAPLSTIINWEREFEMWAPD---FYVVTYTGDKESRSVI 722
Score = 41 (19.5 bits), Expect = 1.9e-14, Sum P(4) = 1.9e-14
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 423 RTKDPVELAKYDVVLTTYSIVT 444
R K ++ K+ V+LT+Y ++T
Sbjct: 742 RMKKEAQI-KFHVLLTSYELIT 762
Score = 37 (18.1 bits), Expect = 9.4e-13, Sum P(3) = 9.4e-13
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 455 EEEADEKNGETYGLSSEFSVNKKRK 479
+ + DE YG E S +KRK
Sbjct: 476 KNDMDEPPAFDYGSGDEDSQREKRK 500
>ZFIN|ZDB-GENE-041111-187 [details] [associations]
symbol:chd4a "chromodomain helicase DNA binding
protein 4a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-041111-187
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX004850
IPI:IPI00962864 Ensembl:ENSDART00000005453 ArrayExpress:F1QWV5
Bgee:F1QWV5 Uniprot:F1QWV5
Length = 1930
Score = 171 (65.3 bits), Expect = 2.6e-15, Sum P(5) = 2.6e-15
Identities = 46/176 (26%), Positives = 90/176 (51%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W +V+DEA +KN++++ R + + + L+GTP+QN++++L+ FL
Sbjct: 846 LGSIDWACLVVDEAHRLKNNQSKFFRILNNYPLQHKLLLTGTPLQNNLEELFHLLNFLTP 905
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ ++ + F + + KKL +L MLRR K ++P KT +
Sbjct: 906 ERFSNLEGFLEEFADIAKEDQI---KKLHDMLGPHMLRRLKADVFK-----HMPSKTELI 957
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+V+ S + +YK + + + F+A G NQ ++L +++ L++ C+HP L
Sbjct: 958 VRVELSPMQKKYYKFILT---RNFEALNTRGGGNQ--VSLLNVVMDLKKCCNHPYL 1008
Score = 97 (39.2 bits), Expect = 2.6e-15, Sum P(5) = 2.6e-15
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 850 EGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
EG + ++FSQ T+MLDL+E+ L +Y R+DG ++ R A+ FN
Sbjct: 1048 EGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGITGGMRQEAIDRFN 1097
Score = 59 (25.8 bits), Expect = 2.6e-15, Sum P(5) = 2.6e-15
Identities = 20/83 (24%), Positives = 35/83 (42%)
Query: 89 DDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPH 148
DD + +++ S Y G K + T + N ++A+ +S KR +P
Sbjct: 75 DDGEEDRSESEGSDYTPGRKKKKRASTAKDKKRNSSAAERNSAAS----KRR-----EPE 125
Query: 149 SLNTKSKSSVENMNSSQIRDTFG 171
+ E +SSQ+ DT+G
Sbjct: 126 EEEDEDDDDSEPKSSSQLLDTWG 148
Score = 52 (23.4 bits), Expect = 2.6e-15, Sum P(5) = 2.6e-15
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 300 ILADDQGLGKTI-SIIALIQMQRSLQSK 326
ILAD+ GLGKT+ + + L + + SK
Sbjct: 732 ILADEMGLGKTVQTAVFLYSLYKEGHSK 759
Score = 51 (23.0 bits), Expect = 2.6e-15, Sum P(5) = 2.6e-15
Identities = 23/76 (30%), Positives = 34/76 (44%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEV 447
LV P S + W RE E PD + V+ Y G KD + + + +S N +
Sbjct: 763 LVSAPLSTIINWEREFEMWAPD---MYVVTYVGD---KDSRAVIREN----EFSFENNAI 812
Query: 448 P--KQPSVDEEEADEK 461
K+PS ++EA K
Sbjct: 813 RGGKKPSKMKKEASVK 828
Score = 45 (20.9 bits), Expect = 1.0e-14, Sum P(5) = 1.0e-14
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 420 GGSR-TKDPVELA-KYDVVLTTYSIVTNEVPKQPSVD 454
GG + +K E + K+ V+LT+Y ++T + S+D
Sbjct: 814 GGKKPSKMKKEASVKFHVLLTSYELITIDTAVLGSID 850
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 132 (51.5 bits), Expect = 2.7e-15, Sum P(4) = 2.7e-15
Identities = 47/173 (27%), Positives = 77/173 (44%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAV 571
W +V+DEA +KN + + + L+GTPIQNS+ +LYS F++ D ++
Sbjct: 170 WSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSK 229
Query: 572 --YKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKV 629
+ F + I + S +L +L+ +LRR K + LP KT +
Sbjct: 230 EQVEDFVQRYQ-DIEKES-ESASELYKLLQPFLLRRVKA-----EVATELPRKTEVVIYH 282
Query: 630 DFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
S + +YK + +K AF + N+L +LR+ DHP L
Sbjct: 283 GMSALQKKYYKAI---LMKDLDAFENETAKKVKLQNVLS---QLRKCVDHPYL 329
Score = 83 (34.3 bits), Expect = 2.7e-15, Sum P(4) = 2.7e-15
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF 898
++FSQ T+MLD++++ L+ Y R+DG++ R A+K+F
Sbjct: 369 LLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNF 411
Score = 80 (33.2 bits), Expect = 2.7e-15, Sum P(4) = 2.7e-15
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 269 GLLSVNLLKHQKIALAWMLQKETRSLHCLGG-ILADDQGLGKTISIIAL 316
GL ++L +Q + W+ Q HC G IL D+ GLGKT IAL
Sbjct: 42 GLTGIHLRPYQLQGVNWLAQ----CFHCQNGCILGDEMGLGKTCQTIAL 86
Score = 79 (32.9 bits), Expect = 2.7e-15, Sum P(4) = 2.7e-15
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-----DPVELAKYDVVLTTYSI 442
L++CP SVL W E+E P LS + Y G + D + +++ V+LTTY I
Sbjct: 101 LILCPLSVLSNWKEEMERFAP---GLSCVTYAGDKDKRACLQQDLKQESRFHVLLTTYEI 157
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 125 (49.1 bits), Expect = 2.7e-15, Sum P(5) = 2.7e-15
Identities = 51/190 (26%), Positives = 82/190 (43%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFL------- 564
W +VLDEA IKN R+ +A + +RR L+GTP+QN++ +L+S FL
Sbjct: 818 WQYMVLDEAHNIKNFRSTRWQALLNFNTQRRLLLTGTPLQNNLAELWSLLYFLMPQTVID 877
Query: 565 --KYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPK 622
K +A +F P+ + G Q + TK T ++ P
Sbjct: 878 GKKVSGFADLDAFQQWFGRPVDKIIETGQNFGQD-------KETKKTVAKLHQVLR--PY 928
Query: 623 TISLTKVDFSKEEWAFYKKLESDSLKKFKAF----------ADAGTVNQNYANILLMLLR 672
+ K D K+ A Y+ + L K + F A + N+ +I+ L++
Sbjct: 929 LLRRLKADVEKQMPAKYEHIVYCKLSKRQRFLYDDFMSRAQTKATLASGNFMSIVNCLMQ 988
Query: 673 LRQACDHPLL 682
LR+ C+HP L
Sbjct: 989 LRKVCNHPNL 998
Score = 103 (41.3 bits), Expect = 2.7e-15, Sum P(5) = 2.7e-15
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++++F+Q T++LD++E LN H Y RLDG + R + FNTD +
Sbjct: 1264 RALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATKIEDRQILTERFNTDSRI 1314
Score = 87 (35.7 bits), Expect = 2.7e-15, Sum P(5) = 2.7e-15
Identities = 24/56 (42%), Positives = 31/56 (55%)
Query: 262 VEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
V+ +P LL NL +QK L W+ H GILAD+ GLGKTI I+L+
Sbjct: 684 VDVPVPS-LLRGNLRTYQKQGLNWLASLYNN--HT-NGILADEMGLGKTIQTISLL 735
Score = 58 (25.5 bits), Expect = 2.7e-15, Sum P(5) = 2.7e-15
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 795 DKSGILDNEYISSKIRTVLD---ILHTQCELNTKCSIVEIHDLA-GSNGSSAV 843
DKS I+DNE I VLD I+ T L +++ LA G N S+V
Sbjct: 1153 DKSSIIDNELIKPLQTRVLDNRKIIDTFAVLTPSAVSLDMRKLALGLNDDSSV 1205
Score = 54 (24.1 bits), Expect = 2.7e-15, Sum P(5) = 2.7e-15
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK 425
L+V P SVL W E + P VL Y+G + +
Sbjct: 749 LIVVPTSVLLNWEMEFKRFAP---GFKVLTYYGSPQQR 783
Score = 42 (19.8 bits), Expect = 4.1e-07, Sum P(5) = 4.1e-07
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 639 YKKLESDSLKKFKAFADAGTVNQNYANILLML 670
YK +E LK FK V+ ++ N++ L
Sbjct: 1018 YKDVERTLLKLFKKNNQVNRVDLDFLNLVFTL 1049
Score = 40 (19.1 bits), Expect = 6.4e-07, Sum P(5) = 6.4e-07
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 631 FSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM 669
F ++ W + E+ ++K F++ +N N LL+
Sbjct: 813 FKRKRWQYMVLDEAHNIKNFRSTRWQALLNFNTQRRLLL 851
Score = 39 (18.8 bits), Expect = 1.4e-10, Sum P(5) = 1.4e-10
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 232 YRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNL 275
+ S S++ + G+E IY ++ E+ +Q + + D SV L
Sbjct: 560 HESSSSESSVMTGEESSIYSSS-ENESQNENDRESDDKTPSVGL 602
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 172 (65.6 bits), Expect = 2.8e-15, Sum P(4) = 2.8e-15
Identities = 53/212 (25%), Positives = 107/212 (50%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W + +DEA +KN + + + ++ R ++GTP+QNS+ +L+S F+
Sbjct: 606 LGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFIMP 665
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + ++ F + +GY+ L VL +LRR K D + +LP K +
Sbjct: 666 EKFEFWEDFEEDH----GKGRENGYQSLHKVLEPFLLRRVKK---DVEK--SLPAKVEQI 716
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK-- 684
+V+ S + +YK + + + +KA A GT + L +++ L++ C+H L+K
Sbjct: 717 LRVEMSALQKQYYKWILT---RNYKALAK-GTRGST-SGFLNIVMELKKCCNHCYLIKPP 771
Query: 685 -EYDFDSVGKISGEMAKRLPRDMLID-LLSRL 714
E + ++ ++ + + + +L+D LL+RL
Sbjct: 772 EENERENGQEVLLSLIRSSGKLILLDKLLTRL 803
Score = 82 (33.9 bits), Expect = 2.8e-15, Sum P(4) = 2.8e-15
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
++FSQ RMLD++ L ++RLDG++ R +A+ FN D + C L
Sbjct: 811 LIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFL 864
Score = 67 (28.6 bits), Expect = 2.8e-15, Sum P(4) = 2.8e-15
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV----------ELAKYDVVL 437
L+V P S L W RE E P+ ++V++Y G +++ + + K++ ++
Sbjct: 537 LIVVPLSTLTSWQREFEIWAPE---INVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 593
Query: 438 TTYSIVTNE 446
TTY I+ +
Sbjct: 594 TTYEILLKD 602
Score = 59 (25.8 bits), Expect = 2.8e-15, Sum P(4) = 2.8e-15
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++ L +Q L W+ +S ILAD+ GLGKTI I+ +
Sbjct: 481 NLELRDYQLEGLNWLAHSWCKSNSV---ILADEMGLGKTIQTISFL 523
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 178 (67.7 bits), Expect = 2.9e-15, Sum P(4) = 2.9e-15
Identities = 54/177 (30%), Positives = 88/177 (49%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +V+DEA IKN +++++ + R L+GTP+QN++ +L+S FL D
Sbjct: 299 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 358
Query: 569 YAVYKSFYSTIKIPISRNSLHGYK---KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+ F S + N L K +L VLR +LRR K D + +LPPK
Sbjct: 359 FNSADDFDSWFD---TNNCLGDQKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEV 410
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
V SK + +Y ++ +K AG +++ +L +L++LR+ C+HP L
Sbjct: 411 KIYVGLSKMQREWYTRI---LMKDIDILNSAGKMDK--MRLLNILMQLRKCCNHPYL 462
Score = 73 (30.8 bits), Expect = 2.9e-15, Sum P(4) = 2.9e-15
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++FSQ TR+LD++E+ +Y RLDG R ++ +N
Sbjct: 503 LIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYN 546
Score = 69 (29.3 bits), Expect = 2.9e-15, Sum P(4) = 2.9e-15
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ I+L+
Sbjct: 180 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 219
Score = 54 (24.1 bits), Expect = 2.9e-15, Sum P(4) = 2.9e-15
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVL--IYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
+V+ P S L W E + VP ++ ++ + +D + ++DV +T+Y ++
Sbjct: 233 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 292
Query: 446 E 446
E
Sbjct: 293 E 293
Score = 44 (20.5 bits), Expect = 9.2e-13, Sum P(4) = 9.2e-13
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 179 PSTVNSKGYIRDYYVKKNDDDIMMYEG--NRILPSSLMHGKSV 219
PS V G +RDY V+ + I +YE N IL + GK++
Sbjct: 172 PSYVKW-GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTL 213
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 178 (67.7 bits), Expect = 2.9e-15, Sum P(4) = 2.9e-15
Identities = 54/177 (30%), Positives = 88/177 (49%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +V+DEA IKN +++++ + R L+GTP+QN++ +L+S FL D
Sbjct: 299 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 358
Query: 569 YAVYKSFYSTIKIPISRNSLHGYK---KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+ F S + N L K +L VLR +LRR K D + +LPPK
Sbjct: 359 FNSADDFDSWFD---TNNCLGDQKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEV 410
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
V SK + +Y ++ +K AG +++ +L +L++LR+ C+HP L
Sbjct: 411 KIYVGLSKMQREWYTRI---LMKDIDILNSAGKMDK--MRLLNILMQLRKCCNHPYL 462
Score = 73 (30.8 bits), Expect = 2.9e-15, Sum P(4) = 2.9e-15
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++FSQ TR+LD++E+ +Y RLDG R ++ +N
Sbjct: 503 LIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYN 546
Score = 69 (29.3 bits), Expect = 2.9e-15, Sum P(4) = 2.9e-15
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ I+L+
Sbjct: 180 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 219
Score = 54 (24.1 bits), Expect = 2.9e-15, Sum P(4) = 2.9e-15
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVL--IYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
+V+ P S L W E + VP ++ ++ + +D + ++DV +T+Y ++
Sbjct: 233 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 292
Query: 446 E 446
E
Sbjct: 293 E 293
Score = 44 (20.5 bits), Expect = 9.2e-13, Sum P(4) = 9.2e-13
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 179 PSTVNSKGYIRDYYVKKNDDDIMMYEG--NRILPSSLMHGKSV 219
PS V G +RDY V+ + I +YE N IL + GK++
Sbjct: 172 PSYVKW-GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTL 213
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 178 (67.7 bits), Expect = 2.9e-15, Sum P(4) = 2.9e-15
Identities = 54/177 (30%), Positives = 88/177 (49%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +V+DEA IKN +++++ + R L+GTP+QN++ +L+S FL D
Sbjct: 299 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 358
Query: 569 YAVYKSFYSTIKIPISRNSLHGYK---KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+ F S + N L K +L VLR +LRR K D + +LPPK
Sbjct: 359 FNSADDFDSWFD---TNNCLGDQKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEV 410
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
V SK + +Y ++ +K AG +++ +L +L++LR+ C+HP L
Sbjct: 411 KIYVGLSKMQREWYTRI---LMKDIDILNSAGKMDK--MRLLNILMQLRKCCNHPYL 462
Score = 73 (30.8 bits), Expect = 2.9e-15, Sum P(4) = 2.9e-15
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++FSQ TR+LD++E+ +Y RLDG R ++ +N
Sbjct: 503 LIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYN 546
Score = 69 (29.3 bits), Expect = 2.9e-15, Sum P(4) = 2.9e-15
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ I+L+
Sbjct: 180 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 219
Score = 54 (24.1 bits), Expect = 2.9e-15, Sum P(4) = 2.9e-15
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVL--IYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
+V+ P S L W E + VP ++ ++ + +D + ++DV +T+Y ++
Sbjct: 233 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 292
Query: 446 E 446
E
Sbjct: 293 E 293
Score = 44 (20.5 bits), Expect = 9.2e-13, Sum P(4) = 9.2e-13
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 179 PSTVNSKGYIRDYYVKKNDDDIMMYEG--NRILPSSLMHGKSV 219
PS V G +RDY V+ + I +YE N IL + GK++
Sbjct: 172 PSYVKW-GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTL 213
>ZFIN|ZDB-GENE-070912-179 [details] [associations]
symbol:chd7 "chromodomain helicase DNA binding
protein 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007368 "determination of left/right symmetry"
evidence=IMP] [GO:0001756 "somitogenesis" evidence=IMP] [GO:0060041
"retina development in camera-type eye" evidence=IMP] [GO:0021602
"cranial nerve morphogenesis" evidence=IMP] [GO:0001947 "heart
looping" evidence=IMP] [GO:0030282 "bone mineralization"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0014029 "neural crest formation" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-070912-179 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0001756 GO:GO:0042472
GO:GO:0060041 GO:GO:0004386 GO:GO:0001947 GO:GO:0030282
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
GO:GO:0021602 EMBL:CR450710 GO:GO:0014029 IPI:IPI00493585
Ensembl:ENSDART00000016208 Ensembl:ENSDART00000135230
Uniprot:F1QGL1
Length = 3140
Score = 196 (74.1 bits), Expect = 3.0e-15, Sum P(4) = 3.0e-15
Identities = 52/184 (28%), Positives = 94/184 (51%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L V W V++DEA +KN ++ + + + L+GTP+QN++++L+S F
Sbjct: 1135 CPELRNVPWRCVIIDEAHRLKNRNCKLLEGLKMMDMEHKVLLTGTPLQNTVEELFSLLNF 1194
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ D + +F + + +KLQ +L+ +MLRR K D + NL PK
Sbjct: 1195 LEPDRFPSESTFMQEFGDLKTEEQV---QKLQGILKPMMLRRLKE---DVEK--NLAPKE 1246
Query: 624 ISLTKVDFSKEEWAFYKK-LESDSLKKFKAFADAGTVN---QNYANILLMLLRLRQACDH 679
++ +V+ + + +Y+ LE + K+ A G+ N N+L ++ LR+ C+H
Sbjct: 1247 ETIIEVELTNVQKKYYRAILEKNFAFLSKSGAGGGSGGGGGSNVPNLLNTMMELRKCCNH 1306
Query: 680 PLLV 683
P L+
Sbjct: 1307 PYLI 1310
Score = 75 (31.5 bits), Expect = 3.0e-15, Sum P(4) = 3.0e-15
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G + ++FSQ R LD++E+ L Q Y R+DG + R A+ F+
Sbjct: 1357 GGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFS 1405
Score = 63 (27.2 bits), Expect = 3.0e-15, Sum P(4) = 3.0e-15
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L ++Q + W+L + +C ILAD+ GLGKTI I +
Sbjct: 1012 LREYQLEGVNWLLFNWYNTRNC---ILADEMGLGKTIQSITFL 1051
Score = 60 (26.2 bits), Expect = 3.0e-15, Sum P(4) = 3.0e-15
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE 429
LV+ P S + W RE L+V++YHG ++ ++
Sbjct: 1064 LVIAPLSTIPNWEREFRTWTE----LNVVVYHGSQASRKTIQ 1101
Score = 43 (20.2 bits), Expect = 5.3e-12, Sum P(3) = 5.3e-12
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 443 VTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKR 478
VT++V K P EE D+ +G SS V +KR
Sbjct: 773 VTSDVEKTPPQSPEEEDD-DGVQKRRSSR-QVKRKR 806
Score = 38 (18.4 bits), Expect = 1.5e-11, Sum P(4) = 1.5e-11
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 750 TGDDNMCP-APRCKEQLGA---DVVFSKTTLKNCVSDDGGGSPTDSPFAD 795
TG+D PR + A DV + TL++ S++ DS D
Sbjct: 3052 TGEDKESDKGPRTNQDPNASVADVETADNTLEDSDSEESQNKTADSSVLD 3101
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 178 (67.7 bits), Expect = 3.0e-15, Sum P(4) = 3.0e-15
Identities = 56/213 (26%), Positives = 107/213 (50%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W + +DEA +KN + + + ++ R ++GTP+QNS+ +L+S F+
Sbjct: 613 LGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP 672
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + ++ F + +GY+ L VL +LRR K D + +LP K +
Sbjct: 673 EKFEFWEDFEEDH----GKGRENGYQSLHKVLEPFLLRRVKK---DVEK--SLPAKVEQI 723
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEY 686
+V+ S + +YK + + + +KA A GT + L +++ L++ C+H L++
Sbjct: 724 LRVEMSALQKQYYKWILT---RNYKALAK-GTRGST-SGFLNIVMELKKCCNHCYLIRAP 778
Query: 687 DFDSVGKISGEMAKRLPRD----MLID-LLSRL 714
+ DS + E+ + L R +L+D LL+RL
Sbjct: 779 E-DSERETGQEVLQSLIRSSGKLILLDKLLTRL 810
Score = 82 (33.9 bits), Expect = 3.0e-15, Sum P(4) = 3.0e-15
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
++FSQ RMLD++ L ++RLDG++ R +A+ FN D + C L
Sbjct: 818 LIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFL 871
Score = 66 (28.3 bits), Expect = 3.0e-15, Sum P(4) = 3.0e-15
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV----------ELAKYDVVL 437
L+V P S L W RE E P+ ++V++Y G +++ + + K++ ++
Sbjct: 544 LIVVPLSTLTSWQREFEIWAPE---VNVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 600
Query: 438 TTYSIVTNE 446
TTY I+ +
Sbjct: 601 TTYEILLKD 609
Score = 59 (25.8 bits), Expect = 3.0e-15, Sum P(4) = 3.0e-15
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++ L +Q L W+ +S ILAD+ GLGKTI I+ +
Sbjct: 488 NLELRDYQLEGLNWLAHSWCKSNSV---ILADEMGLGKTIQTISFL 530
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 109 (43.4 bits), Expect = 3.3e-15, Sum P(5) = 3.3e-15
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFL 564
W ++LDEA IKN R+ RA + + R L+GTP+QN++ +L+S FL
Sbjct: 945 WTYMILDEAHNIKNFRSTRWRALLNFNTENRLLLTGTPLQNNLMELWSLLYFL 997
Score = 101 (40.6 bits), Expect = 3.3e-15, Sum P(5) = 3.3e-15
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++++F+Q T++LD++E LN H +Y RLDG + R + FN D ++
Sbjct: 1384 RALIFTQMTKVLDILEQFLNIHGYRYMRLDGATKIEDRQLLTEKFNRDPKI 1434
Score = 95 (38.5 bits), Expect = 3.3e-15, Sum P(5) = 3.3e-15
Identities = 56/235 (23%), Positives = 101/235 (42%)
Query: 88 SDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTL--PAFP 145
S+D + S+ DD+ G ++ Q N +A+ A+ +E + ++ L L +
Sbjct: 641 SEDAESSDD--DDTDVTRGLASLYQ----NDEVADFATTTFEYSAEEKKLIEDLNQESDS 694
Query: 146 QPHSL-NTKSKSSVENMNSSQ--IRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMM 202
+ +SL ++ S SS+ + SS+ DT + ++ P + G + I+
Sbjct: 695 RMNSLLDSDSVSSISDSESSEESSSDTEMDQSTVSEPPRSSETGSNTGLASLFTNGTIVS 754
Query: 203 YEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKV 262
E + + SS +S + +L ++ DE + +E +N KV
Sbjct: 755 DEEDDVSISSNFENES-DESMNSSDRELEVNGNGKIDKIASTDED---DSNVEIVNGSKV 810
Query: 263 EATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+ LL L +QK L W+ + + GILAD+ GLGKTI I+L+
Sbjct: 811 KDVPIPSLLRGTLRPYQKQGLNWLASLYNNNTN---GILADEMGLGKTIQTISLL 862
Score = 68 (29.0 bits), Expect = 3.3e-15, Sum P(5) = 3.3e-15
Identities = 26/88 (29%), Positives = 42/88 (47%)
Query: 593 KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKA 652
+L VLR +LRR K ++ Q +P K + SK + Y S + K K
Sbjct: 1060 RLHQVLRPYLLRRLKKD-VEKQ----MPGKYEHIVYCRLSKRQRFLYDDFMSRA--KTKE 1112
Query: 653 FADAGTVNQNYANILLMLLRLRQACDHP 680
+G N+ +I+ L++LR+ C+HP
Sbjct: 1113 TLASG----NFLSIINCLMQLRKVCNHP 1136
Score = 56 (24.8 bits), Expect = 3.3e-15, Sum P(5) = 3.3e-15
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRTKDPVELAKYD---VVLTTYSI 442
L++ P SV+ W E + P VL Y+G R + K D V +T+Y +
Sbjct: 876 LIIVPTSVMLNWEMEFKKFAP---GFKVLTYYGSPQQRAQKRKGWNKPDAFHVCITSYQL 932
Query: 443 VTNE 446
V +
Sbjct: 933 VVQD 936
Score = 53 (23.7 bits), Expect = 9.6e-10, Sum P(4) = 9.6e-10
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 424 TKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETY-GLSSEFSVNKK 477
+++P A+ D TT+ TN+ S +EEE +E N + + ++ VN K
Sbjct: 543 SREPTVEAESDDNSTTFDDNTNDSDNFSSSEEEENEEDNTQQQINGNKKYDVNGK 597
Score = 45 (20.9 bits), Expect = 5.9e-09, Sum P(4) = 5.9e-09
Identities = 36/169 (21%), Positives = 70/169 (41%)
Query: 78 QEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISS---Q 134
++ + + F ++ S +D ++GN + ++ + + +NV + K+
Sbjct: 757 EDDVSISSNFENESDESMNSSDRELEVNGNGKIDKIASTDEDDSNVEIVNGSKVKDVPIP 816
Query: 135 QALKRTLPAFPQPHSLNTKSKSSVENMNSSQI-RDTFGNAYHLAGPSTVNSKGYIRDYYV 193
L+ TL + Q LN + S+ N N++ I D G + T++ Y+ +
Sbjct: 817 SLLRGTLRPY-QKQGLNWLA--SLYNNNTNGILADEMGLGKTI---QTISLLAYLACEHH 870
Query: 194 KKNDDDIMMYEGNRILPSSLMHGKSVSMTQFG-GPSDLAYRSGSADERA 241
K I I+P+S+M + +F G L Y GS +RA
Sbjct: 871 KWGPHLI-------IVPTSVMLNWEMEFKKFAPGFKVLTYY-GSPQQRA 911
Score = 45 (20.9 bits), Expect = 2.2e-06, Sum P(4) = 2.2e-06
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 631 FSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM 669
F + W + E+ ++K F++ +N N N LL+
Sbjct: 940 FKRRRWTYMILDEAHNIKNFRSTRWRALLNFNTENRLLL 978
Score = 42 (19.8 bits), Expect = 2.0e-09, Sum P(5) = 2.0e-09
Identities = 20/69 (28%), Positives = 28/69 (40%)
Query: 739 VFCYQCASEYITGDDNMCPAPRCKEQLGADVV---------FSKTTLKNCVSDDGGGSPT 789
V Y+ SEY T + N+ K QL V+ F K ++++ VSD G
Sbjct: 1484 VHIYRFVSEY-TIESNIIKKANQKRQLDNVVIQEGEFTTDYFGKFSVRDLVSDSNIGKEI 1542
Query: 790 DSPFADKSG 798
D SG
Sbjct: 1543 TDRTIDFSG 1551
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 146 (56.5 bits), Expect = 3.4e-15, Sum P(4) = 3.4e-15
Identities = 48/190 (25%), Positives = 90/190 (47%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK--- 565
++ W +VLDEAQ IK+ +Q + + R LSGTPIQNS+ +L++ F+
Sbjct: 660 RIKWQYMVLDEAQAIKSAASQRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPTL 719
Query: 566 YDPYAVYKSFYSTIKIPISRNSL----HGYKKLQAVLRAIMLRRTK----GTFIDGQPII 617
+D + + ++S + N +L +L+ MLRR K D I+
Sbjct: 720 FDSHDEFNEWFSKDIESHAENKTGIDEKQISRLHMILKPFMLRRIKKDVENELSDKIEIM 779
Query: 618 NLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQAC 677
P TI K+ + A +K+ + L + + + + + +N++ ++++ R+ C
Sbjct: 780 VYCPLTIR-QKLLYR----ALKQKIRIEDLLHLTSGSTTTSSSSSASNLMNLVMQFRKVC 834
Query: 678 DHPLLVKEYD 687
+HP L + D
Sbjct: 835 NHPELFERRD 844
Score = 91 (37.1 bits), Expect = 3.4e-15, Sum P(4) = 3.4e-15
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
+++SQ T+M+DL+E + +Y RLDG+ + AR V DF T ++
Sbjct: 1176 LIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSKISARRDMVADFQTRADI 1224
Score = 80 (33.2 bits), Expect = 3.4e-15, Sum P(4) = 3.4e-15
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 251 QAALEDLN-QPKVEAT-LPDGLLSVNLLKHQKI-ALAWMLQKETRSLHCLGGILADDQGL 307
Q ++ED+ +P+ E LP + LK +I + W+ + + GILAD+ GL
Sbjct: 508 QESVEDIKPEPRPEMKDLPQPKMFKGTLKGYQIKGMTWLANIYDQGI---SGILADEMGL 564
Query: 308 GKTISIIALI 317
GKT+ IA +
Sbjct: 565 GKTVQSIAFL 574
Score = 67 (28.6 bits), Expect = 3.4e-15, Sum P(4) = 3.4e-15
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-------DPVEL----AKYDVV 436
LV+ PAS L W +E+ VPD V+ Y G + D L A + VV
Sbjct: 588 LVISPASTLHNWQQEMSRFVPD---FKVVPYWGSPAERKILRQFWDQKHLHTRDASFHVV 644
Query: 437 LTTYSIVTNE 446
+T+Y +V ++
Sbjct: 645 ITSYQLVVSD 654
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 131 (51.2 bits), Expect = 3.4e-15, Sum P(4) = 3.4e-15
Identities = 47/173 (27%), Positives = 77/173 (44%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAV 571
W +V+DEA +KN + + + L+GTPIQNS+ +LYS F++ D ++
Sbjct: 170 WSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSK 229
Query: 572 --YKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKV 629
+ F + I + S +L +L+ +LRR K + LP KT +
Sbjct: 230 EQVEDFVQRYQ-DIEKES-ESASELYKLLQPFLLRRVKA-----EVATELPRKTEVVIYH 282
Query: 630 DFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
S + +YK + +K AF + N+L +LR+ DHP L
Sbjct: 283 GMSALQKKYYKAI---LMKDLDAFENEMAKKVKLQNVLS---QLRKCVDHPYL 329
Score = 83 (34.3 bits), Expect = 3.4e-15, Sum P(4) = 3.4e-15
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDF 898
++FSQ T+MLD++++ L+ Y R+DG++ R A+K+F
Sbjct: 369 LLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNF 411
Score = 80 (33.2 bits), Expect = 3.4e-15, Sum P(4) = 3.4e-15
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 269 GLLSVNLLKHQKIALAWMLQKETRSLHCLGG-ILADDQGLGKTISIIAL 316
GL ++L +Q + W+ Q HC G IL D+ GLGKT IAL
Sbjct: 42 GLTGIHLRPYQLQGVNWLAQ----CFHCQNGCILGDEMGLGKTCQTIAL 86
Score = 79 (32.9 bits), Expect = 3.4e-15, Sum P(4) = 3.4e-15
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK-----DPVELAKYDVVLTTYSI 442
L++CP SVL W E+E P LS + Y G + D + +++ V+LTTY I
Sbjct: 101 LILCPLSVLSNWKEEMERFAP---GLSCVTYAGDKDKRACLQQDLKQESRFHVLLTTYEI 157
>MGI|MGI:2444036 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
Pfam:PF00176 MGI:MGI:2444036 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:AC136146 EMBL:AC122417 IPI:IPI00988884
ProteinModelPortal:E9Q9V7 SMR:E9Q9V7 Ensembl:ENSMUST00000066582
OMA:VIQDHQA Bgee:E9Q9V7 Uniprot:E9Q9V7
Length = 936
Score = 181 (68.8 bits), Expect = 3.6e-15, Sum P(3) = 3.6e-15
Identities = 53/178 (29%), Positives = 94/178 (52%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK---YDP 568
W ++LDEAQ IKN ++Q ++ + ++RR L+GTP+QNS+ +L+S FL +
Sbjct: 732 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 791
Query: 569 YAVYKSFYS---TIKIPISRNSLHGY-KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTI 624
+ +K ++S T I S+ G K+L VLR +LRR K +D + +P K
Sbjct: 792 HREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVK---VDVEK--QMPKKYE 846
Query: 625 SLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ + SK + Y + + K + A ++ +++ +L++LR+ C+HP L
Sbjct: 847 HVIRCRLSKRQRCLYDDFMAQTTTK-ETLATG-----HFMSVINILMQLRKVCNHPNL 898
Score = 90 (36.7 bits), Expect = 3.6e-15, Sum P(3) = 3.6e-15
Identities = 67/246 (27%), Positives = 99/246 (40%)
Query: 78 QEKLQMLPGF--SDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQ 135
+E LQ G D ++G ++D + N + G+L+ V A E SSQ
Sbjct: 424 EELLQQYAGAYACDASAPASGDSEDEDEVEANSSDGELEET------VEEAAQEDSSSQS 477
Query: 136 -ALKRTLPAFPQPHSLNTKSKSSV-ENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYV 193
+ + HS S SS E S + D + + +G D V
Sbjct: 478 DSAEECSEDEEDEHSEEEMSGSSQSEESESDESEDAQSQSQ---ADEEQDDEG--EDDDV 532
Query: 194 KKNDDDI--MMYEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQ 251
+DDD + Y R S + G S T G + L + D A E L Q
Sbjct: 533 DDDDDDGFGVEYLLARDDERSEVDGGSGPPTP-GPTTTLGPKKEITDIAAAA--ESL--Q 587
Query: 252 AALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTI 311
L +V+ +P LL L ++Q I L W++ + L+ GILAD+ GLGKTI
Sbjct: 588 PKGYTLATTQVKTPIPL-LLRGQLREYQHIGLDWLVTMYEKKLN---GILADEMGLGKTI 643
Query: 312 SIIALI 317
I+L+
Sbjct: 644 QTISLL 649
Score = 57 (25.1 bits), Expect = 3.6e-15, Sum P(3) = 3.6e-15
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELA-----KYDVVLTTYSI 442
L++ P SV+ W EL+ P + +L Y+G + + + V +T+Y +
Sbjct: 663 LIIVPTSVMLNWEMELKRWCP---SFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 719
Query: 443 VTNE 446
V +
Sbjct: 720 VLQD 723
Score = 39 (18.8 bits), Expect = 9.3e-09, Sum P(2) = 9.3e-09
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 450 QPSVDEEEADEKNGETYGLSSEFSVNKKRKKI 481
QP +EEE DE+ E +R++I
Sbjct: 271 QPQEEEEEDDEETIEVEEQQEGNDAETQRREI 302
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 178 (67.7 bits), Expect = 3.6e-15, Sum P(4) = 3.6e-15
Identities = 54/177 (30%), Positives = 88/177 (49%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +V+DEA IKN +++++ + R L+GTP+QN++ +L+S FL D
Sbjct: 298 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 357
Query: 569 YAVYKSFYSTIKIPISRNSLHGYK---KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+ F S + N L K +L VLR +LRR K D + +LPPK
Sbjct: 358 FNSADDFDSWFD---TNNCLGDQKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEV 409
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
V SK + +Y ++ +K AG +++ +L +L++LR+ C+HP L
Sbjct: 410 KIYVGLSKMQREWYTRI---LMKDIDILNSAGKMDK--MRLLNILMQLRKCCNHPYL 461
Score = 71 (30.1 bits), Expect = 3.6e-15, Sum P(4) = 3.6e-15
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++FSQ TR+LD++E+ +Y RLDG R ++ +N
Sbjct: 502 LIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYN 545
Score = 69 (29.3 bits), Expect = 3.6e-15, Sum P(4) = 3.6e-15
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ I+L+
Sbjct: 179 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 218
Score = 55 (24.4 bits), Expect = 3.6e-15, Sum P(4) = 3.6e-15
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVL--IYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
+V+ P S L W E + VP ++ ++ + +D + ++DV +T+Y ++
Sbjct: 232 MVLVPKSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 291
Query: 446 E 446
E
Sbjct: 292 E 292
Score = 44 (20.5 bits), Expect = 1.1e-12, Sum P(4) = 1.1e-12
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 179 PSTVNSKGYIRDYYVKKNDDDIMMYEG--NRILPSSLMHGKSV 219
PS V G +RDY V+ + I +YE N IL + GK++
Sbjct: 171 PSYVKW-GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTL 212
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 199 (75.1 bits), Expect = 4.1e-15, Sum P(4) = 4.1e-15
Identities = 55/214 (25%), Positives = 111/214 (51%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L+ + W +++DEA +KN + + ++ R + ++GTP+QNS+ +L++ F+
Sbjct: 527 LSSIDWAALLVDEAHRLKNDESLLYKSLTQFRFNHKLLITGTPLQNSLKELWALLHFIMP 586
Query: 567 DPYAVYKSFYSTIKIPISRNSLH-GYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+ + ++ F + S H G L L +LRR K D + +LPPKT
Sbjct: 587 EKFDCWEEFETA-----HNESNHKGISALHKKLEPFLLRRVKK---DVEK--SLPPKTEQ 636
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKE 685
+ +VD + + FYK + + + ++ G++N + N+++ L++ C+H L ++
Sbjct: 637 ILRVDMTAHQKQFYKWILTKNYRELSKGVK-GSIN-GFVNLVM---ELKKCCNHASLTRQ 691
Query: 686 YDF---DSVGKISGEMAKRLPRDMLID-LLSRLE 715
YD D+ G++ ++ K + +L+D LL RL+
Sbjct: 692 YDHIYDDAQGRLQ-QLLKSSGKLILLDKLLCRLK 724
Score = 73 (30.8 bits), Expect = 4.1e-15, Sum P(4) = 4.1e-15
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++FSQ MLD+++ L +RLDG+M R +A+ +N
Sbjct: 731 LIFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADLRKQALDHYN 774
Score = 67 (28.6 bits), Expect = 4.1e-15, Sum P(4) = 4.1e-15
Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 268 DGLLSVNLLKHQKIALAWMLQKETRSLHCLGG--ILADDQGLGKTISIIALI 317
DG + L +Q L WM+ C G ILAD+ GLGKTI I+L+
Sbjct: 398 DGESTHKLRDYQLEGLNWMVYA-----WCKGNSSILADEMGLGKTIQSISLL 444
Score = 39 (18.8 bits), Expect = 4.1e-15, Sum P(4) = 4.1e-15
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 88 SDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIAN 122
+D + S+ Q+DDS S N + + P+ N
Sbjct: 45 ADSPESSSDQSDDSDDASENSSSSEPDEPAPKKKN 79
>UNIPROTKB|F1PWD8 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 OMA:TFGVIFD EMBL:AAEX03015818
EMBL:AAEX03015819 EMBL:AAEX03015820 Ensembl:ENSCAFT00000011497
GeneTree:ENSGT00700000105087 Uniprot:F1PWD8
Length = 2994
Score = 199 (75.1 bits), Expect = 4.4e-15, Sum P(5) = 4.4e-15
Identities = 51/180 (28%), Positives = 92/180 (51%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L + W VV+DEA +KN ++ + + + L+GTP+QN++++L+S F
Sbjct: 1090 CPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHF 1149
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + +F + + +KLQA+L+ +MLRR K D + NL PK
Sbjct: 1150 LEPSRFPSETTFMQEFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--NLAPKE 1201
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K F G N N+L ++ LR+ C+HP L+
Sbjct: 1202 ETIIEVELTNIQKKYYRAI----LEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLI 1257
Score = 75 (31.5 bits), Expect = 4.4e-15, Sum P(5) = 4.4e-15
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G + ++FSQ R LD++E+ L Q Y R+DG + R A+ F+
Sbjct: 1304 GGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFS 1352
Score = 61 (26.5 bits), Expect = 4.4e-15, Sum P(5) = 4.4e-15
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L ++Q + W+L +C ILAD+ GLGKTI I +
Sbjct: 967 LREYQLEGVNWLLFNWYNMRNC---ILADEMGLGKTIQSITFL 1006
Score = 61 (26.5 bits), Expect = 4.4e-15, Sum P(5) = 4.4e-15
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS---RT--------KDPVELA----- 431
LV+ P S + W RE L+V++YHG RT KDP
Sbjct: 1019 LVIAPLSTIPNWEREFRTWTE----LNVVVYHGSQASRRTIQSYEMYFKDPQGRVIKGSY 1074
Query: 432 KYDVVLTTYSIVTNEVPK 449
K+ ++TT+ ++ + P+
Sbjct: 1075 KFHAIITTFEMILTDCPE 1092
Score = 40 (19.1 bits), Expect = 4.4e-15, Sum P(5) = 4.4e-15
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 179 PSTVNSKGYIR--DYYVKKNDDDI-MMYEGNRILPSSLMHGKSVSMTQFGGP 227
PST ++ + D+Y + + +M + NR++ S+ +G + +Q+ GP
Sbjct: 57 PSTNQNQTKLTHFDHYNQYEQQKMHLMDQPNRMMSSAPGNGLASPHSQYHGP 108
>UNIPROTKB|G3N326 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 Pfam:PF00176
GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 EMBL:DAAA02057908
Ensembl:ENSBTAT00000063921 Uniprot:G3N326
Length = 934
Score = 181 (68.8 bits), Expect = 4.5e-15, Sum P(3) = 4.5e-15
Identities = 53/178 (29%), Positives = 94/178 (52%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK---YDP 568
W ++LDEAQ IKN ++Q ++ + ++RR L+GTP+QNS+ +L+S FL +
Sbjct: 730 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 789
Query: 569 YAVYKSFYS---TIKIPISRNSLHGY-KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTI 624
+ +K ++S T I S+ G K+L VLR +LRR K +D + +P K
Sbjct: 790 HREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVK---VDVEK--QMPKKYE 844
Query: 625 SLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ + SK + Y + + K + A ++ +++ +L++LR+ C+HP L
Sbjct: 845 HVIRCRLSKRQRCLYDDFMAQTTTK-ETLATG-----HFMSVINILMQLRKVCNHPNL 896
Score = 89 (36.4 bits), Expect = 4.5e-15, Sum P(3) = 4.5e-15
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 261 KVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+V+ +P LL L ++Q I L W++ + L+ GILAD+ GLGKTI I+L+
Sbjct: 595 QVKTPIPL-LLRGQLREYQHIGLDWLVTMYEKKLN---GILADEMGLGKTIQTISLL 647
Score = 57 (25.1 bits), Expect = 4.5e-15, Sum P(3) = 4.5e-15
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELA-----KYDVVLTTYSI 442
L++ P SV+ W EL+ P + +L Y+G + + + V +T+Y +
Sbjct: 661 LIIVPTSVMLNWEMELKRWCP---SFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 717
Query: 443 VTNE 446
V +
Sbjct: 718 VLQD 721
Score = 39 (18.8 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 450 QPSVDEEEADEKNGETYGLSSEFSVNKKRKKI 481
QP +EEE DE+ E +R++I
Sbjct: 274 QPQEEEEEDDEETIEVEEQQEGNDAETQRREI 305
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 178 (67.7 bits), Expect = 4.6e-15, Sum P(4) = 4.6e-15
Identities = 54/177 (30%), Positives = 88/177 (49%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +V+DEA IKN +++++ + R L+GTP+QN++ +L+S FL D
Sbjct: 298 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 357
Query: 569 YAVYKSFYSTIKIPISRNSLHGYK---KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+ F S + N L K +L VLR +LRR K D + +LPPK
Sbjct: 358 FNSADDFDSWFD---TNNCLGDQKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEV 409
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
V SK + +Y ++ +K AG +++ +L +L++LR+ C+HP L
Sbjct: 410 KIYVGLSKMQREWYTRI---LMKDIDILNSAGKMDK--MRLLNILMQLRKCCNHPYL 461
Score = 71 (30.1 bits), Expect = 4.6e-15, Sum P(4) = 4.6e-15
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++FSQ TR+LD++E+ +Y RLDG R ++ +N
Sbjct: 502 LIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYN 545
Score = 69 (29.3 bits), Expect = 4.6e-15, Sum P(4) = 4.6e-15
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ I+L+
Sbjct: 179 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 218
Score = 54 (24.1 bits), Expect = 4.6e-15, Sum P(4) = 4.6e-15
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVL--IYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
+V+ P S L W E + VP ++ ++ + +D + ++DV +T+Y ++
Sbjct: 232 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 291
Query: 446 E 446
E
Sbjct: 292 E 292
Score = 44 (20.5 bits), Expect = 1.4e-12, Sum P(4) = 1.4e-12
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 179 PSTVNSKGYIRDYYVKKNDDDIMMYEG--NRILPSSLMHGKSV 219
PS V G +RDY V+ + I +YE N IL + GK++
Sbjct: 171 PSYVKW-GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTL 212
>UNIPROTKB|F1SSZ2 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:FP102454 Ensembl:ENSSSCT00000019561 Uniprot:F1SSZ2
Length = 1667
Score = 183 (69.5 bits), Expect = 4.6e-15, Sum P(4) = 4.6e-15
Identities = 50/176 (28%), Positives = 91/176 (51%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W +V+DEA +KN++++ R S + + L+GTP+QN++++L+ FL
Sbjct: 752 LGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTP 811
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + + F IS+ KKL +L MLRR K N+P KT +
Sbjct: 812 ERFNNLEGFLEEFA-DISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----NMPAKTELI 863
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+V+ S+ + +YK + + + F+A G NQ ++L +++ L++ C+HP L
Sbjct: 864 VRVELSQMQKKYYKFILT---RNFEALNSKGGGNQ--VSLLNIMMDLKKCCNHPYL 914
Score = 91 (37.1 bits), Expect = 4.6e-15, Sum P(4) = 4.6e-15
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
++FSQ T+MLDL+E+ L +Y R+DG ++ R A+ FN ++ C L
Sbjct: 960 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 1013
Score = 57 (25.1 bits), Expect = 4.6e-15, Sum P(4) = 4.6e-15
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 300 ILADDQGLGKTI-SIIALIQMQRSLQSK 326
ILAD+ GLGKT+ +I+ L + + SK
Sbjct: 638 ILADEMGLGKTVQTIVFLYSLYKEGHSK 665
Score = 50 (22.7 bits), Expect = 4.6e-15, Sum P(4) = 4.6e-15
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV 428
LV P S + W RE E PD V+ Y G ++ +
Sbjct: 669 LVSAPLSTIINWEREFEMWAPD---FYVVTYTGDKESRSVI 706
Score = 45 (20.9 bits), Expect = 1.5e-14, Sum P(4) = 1.5e-14
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 423 RTKDPVELAKYDVVLTTYSIVT 444
R K V++ K+ V+LT+Y ++T
Sbjct: 726 RMKKEVQI-KFHVLLTSYELIT 746
Score = 39 (18.8 bits), Expect = 9.5e-13, Sum P(3) = 9.5e-13
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 470 SEFSVNKKRKK 480
S++S NKK+KK
Sbjct: 7 SDYSPNKKKKK 17
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 178 (67.7 bits), Expect = 4.6e-15, Sum P(4) = 4.6e-15
Identities = 54/177 (30%), Positives = 88/177 (49%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +V+DEA IKN +++++ + R L+GTP+QN++ +L+S FL D
Sbjct: 299 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDV 358
Query: 569 YAVYKSFYSTIKIPISRNSLHGYK---KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+ F S + N L K +L VLR +LRR K D + +LPPK
Sbjct: 359 FNSADDFDSWFD---TNNCLGDQKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEV 410
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
V SK + +Y ++ +K AG +++ +L +L++LR+ C+HP L
Sbjct: 411 KIYVGLSKMQREWYTRI---LMKDIDILNSAGKMDK--MRLLNILMQLRKCCNHPYL 462
Score = 71 (30.1 bits), Expect = 4.6e-15, Sum P(4) = 4.6e-15
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++FSQ TR+LD++E+ +Y RLDG R ++ +N
Sbjct: 503 LIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYN 546
Score = 69 (29.3 bits), Expect = 4.6e-15, Sum P(4) = 4.6e-15
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ I+L+
Sbjct: 180 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 219
Score = 54 (24.1 bits), Expect = 4.6e-15, Sum P(4) = 4.6e-15
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVL--IYHGGSRTKDPVELAKYDVVLTTYSIVTN 445
+V+ P S L W E + VP ++ ++ + +D + ++DV +T+Y ++
Sbjct: 233 MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 292
Query: 446 E 446
E
Sbjct: 293 E 293
Score = 44 (20.5 bits), Expect = 1.5e-12, Sum P(4) = 1.5e-12
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 179 PSTVNSKGYIRDYYVKKNDDDIMMYEG--NRILPSSLMHGKSV 219
PS V G +RDY V+ + I +YE N IL + GK++
Sbjct: 172 PSYVKW-GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTL 213
>UNIPROTKB|F1RIM3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:FP102454 Ensembl:ENSSSCT00000003736 Uniprot:F1RIM3
Length = 1723
Score = 183 (69.5 bits), Expect = 5.3e-15, Sum P(4) = 5.3e-15
Identities = 50/176 (28%), Positives = 91/176 (51%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W +V+DEA +KN++++ R S + + L+GTP+QN++++L+ FL
Sbjct: 768 LGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTP 827
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + + F IS+ KKL +L MLRR K N+P KT +
Sbjct: 828 ERFNNLEGFLEEFA-DISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----NMPAKTELI 879
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+V+ S+ + +YK + + + F+A G NQ ++L +++ L++ C+HP L
Sbjct: 880 VRVELSQMQKKYYKFILT---RNFEALNSKGGGNQ--VSLLNIMMDLKKCCNHPYL 930
Score = 91 (37.1 bits), Expect = 5.3e-15, Sum P(4) = 5.3e-15
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
++FSQ T+MLDL+E+ L +Y R+DG ++ R A+ FN ++ C L
Sbjct: 976 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 1029
Score = 57 (25.1 bits), Expect = 5.3e-15, Sum P(4) = 5.3e-15
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 300 ILADDQGLGKTI-SIIALIQMQRSLQSK 326
ILAD+ GLGKT+ +I+ L + + SK
Sbjct: 654 ILADEMGLGKTVQTIVFLYSLYKEGHSK 681
Score = 56 (24.8 bits), Expect = 2.0e-14, Sum P(3) = 2.0e-14
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 452 SVDEEEADEKNGETYGLSSEFSVNKKRKK 480
S +EE+ +EK+ E+ G S++S NKK+KK
Sbjct: 8 SENEEDLEEKS-ESEG--SDYSPNKKKKK 33
Score = 50 (22.7 bits), Expect = 5.3e-15, Sum P(4) = 5.3e-15
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV 428
LV P S + W RE E PD V+ Y G ++ +
Sbjct: 685 LVSAPLSTIINWEREFEMWAPD---FYVVTYTGDKESRSVI 722
Score = 45 (20.9 bits), Expect = 1.7e-14, Sum P(4) = 1.7e-14
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 423 RTKDPVELAKYDVVLTTYSIVT 444
R K V++ K+ V+LT+Y ++T
Sbjct: 742 RMKKEVQI-KFHVLLTSYELIT 762
>UNIPROTKB|Q9P2D1 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] [GO:0008015 "blood circulation"
evidence=IEA] [GO:0030540 "female genitalia development"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0043584 "nose development" evidence=IMP] [GO:0048806 "genitalia
development" evidence=IMP] [GO:0060021 "palate development"
evidence=IMP] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0001501 "skeletal system development"
evidence=IMP] [GO:0050890 "cognition" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP] [GO:0021545
"cranial nerve development" evidence=IMP] [GO:0060123 "regulation
of growth hormone secretion" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0030217 "T cell differentiation"
evidence=IMP] [GO:0060173 "limb development" evidence=IMP]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0060324 "face development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0008015 GO:GO:0003007 GO:GO:0050890
GO:GO:0001701 GO:GO:0040018 GO:GO:0007417 GO:GO:0006351
GO:GO:0003682 GO:GO:0016568 GO:GO:0048806 GO:GO:0042472
GO:GO:0001501 GO:GO:0060041 GO:GO:0007605 GO:GO:0007512
GO:GO:0004386 GO:GO:0035116 GO:GO:0060324 GO:GO:0060021
GO:GO:0060173 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150 CTD:55636
KO:K14437 OrthoDB:EOG4MCWZD EMBL:AC023102 EMBL:AC113143
EMBL:AB037837 EMBL:AK000364 EMBL:AK000368 EMBL:BC014681
EMBL:BC051264 EMBL:BC053890 EMBL:BC068000 EMBL:BC080627
EMBL:BC110818 IPI:IPI00472901 IPI:IPI00794880 RefSeq:NP_060250.2
UniGene:Hs.20395 UniGene:Hs.733236 PDB:2CKC PDB:2V0E PDB:2V0F
PDBsum:2CKC PDBsum:2V0E PDBsum:2V0F ProteinModelPortal:Q9P2D1
SMR:Q9P2D1 DIP:DIP-48685N IntAct:Q9P2D1 STRING:Q9P2D1
PhosphoSite:Q9P2D1 DMDM:148877246 PaxDb:Q9P2D1 PRIDE:Q9P2D1
Ensembl:ENST00000307121 Ensembl:ENST00000423902
Ensembl:ENST00000525508 GeneID:55636 KEGG:hsa:55636 UCSC:uc003xue.3
GeneCards:GC08P061642 H-InvDB:HIX0007533 HGNC:HGNC:20626 MIM:214800
MIM:608765 MIM:608892 MIM:612370 neXtProt:NX_Q9P2D1 Orphanet:138
Orphanet:478 Orphanet:432 PharmGKB:PA134948695 InParanoid:Q9P2D1
OMA:TFGVIFD EvolutionaryTrace:Q9P2D1 GenomeRNAi:55636 NextBio:60291
ArrayExpress:Q9P2D1 Bgee:Q9P2D1 CleanEx:HS_CHD7
Genevestigator:Q9P2D1 GermOnline:ENSG00000171316 GO:GO:0021545
GO:GO:0043584 GO:GO:0060123 Uniprot:Q9P2D1
Length = 2997
Score = 199 (75.1 bits), Expect = 5.5e-15, Sum P(5) = 5.5e-15
Identities = 51/180 (28%), Positives = 92/180 (51%)
Query: 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRF 563
C L + W VV+DEA +KN ++ + + + L+GTP+QN++++L+S F
Sbjct: 1091 CPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHF 1150
Query: 564 LKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKT 623
L+ + +F + + +KLQA+L+ +MLRR K D + NL PK
Sbjct: 1151 LEPSRFPSETTFMQEFGDLKTEEQV---QKLQAILKPMMLRRLKE---DVEK--NLAPKE 1202
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
++ +V+ + + +Y+ + L+K F G N N+L ++ LR+ C+HP L+
Sbjct: 1203 ETIIEVELTNIQKKYYRAI----LEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLI 1258
Score = 75 (31.5 bits), Expect = 5.5e-15, Sum P(5) = 5.5e-15
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 851 GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
G + ++FSQ R LD++E+ L Q Y R+DG + R A+ F+
Sbjct: 1305 GGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFS 1353
Score = 63 (27.2 bits), Expect = 5.5e-15, Sum P(5) = 5.5e-15
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL 430
LV+ P S + W RE L+V++YHG ++ ++L
Sbjct: 1020 LVIAPLSTIPNWEREFRTWTE----LNVVVYHGSQASRRTIQL 1058
Score = 61 (26.5 bits), Expect = 5.5e-15, Sum P(5) = 5.5e-15
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L ++Q + W+L +C ILAD+ GLGKTI I +
Sbjct: 968 LREYQLEGVNWLLFNWYNMRNC---ILADEMGLGKTIQSITFL 1007
Score = 37 (18.1 bits), Expect = 5.5e-15, Sum P(5) = 5.5e-15
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 210 PSSLMHGKSVS 220
PS+ +HG+SV+
Sbjct: 260 PSTALHGESVA 270
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 174 (66.3 bits), Expect = 5.8e-15, Sum P(4) = 5.8e-15
Identities = 54/212 (25%), Positives = 107/212 (50%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W + +DEA +KN + + + ++ R ++GTP+QNS+ +L+S F+
Sbjct: 595 LGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP 654
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + ++ F + +GY+ L VL +LRR K D + +LP K +
Sbjct: 655 EKFEFWEDFEEDH----GKGRENGYQSLHKVLEPFLLRRVKK---DVEK--SLPAKVEQI 705
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK-- 684
+V+ S + +YK + + + +KA A GT + L +++ L++ C+H L+K
Sbjct: 706 LRVEMSALQKQYYKWILT---RNYKALAK-GTRGST-SGFLNIVMELKKCCNHCYLIKPP 760
Query: 685 -EYDFDSVGKISGEMAKRLPRDMLID-LLSRL 714
E + ++ +I + + + +L+D LL+RL
Sbjct: 761 EENERENGQEILLSLIRSSGKLILLDKLLTRL 792
Score = 82 (33.9 bits), Expect = 5.8e-15, Sum P(4) = 5.8e-15
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
++FSQ RMLD++ L ++RLDG++ R +A+ FN D + C L
Sbjct: 800 LIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFL 853
Score = 67 (28.6 bits), Expect = 5.8e-15, Sum P(4) = 5.8e-15
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV----------ELAKYDVVL 437
L+V P S L W RE E P+ ++V++Y G +++ + + K++ ++
Sbjct: 526 LIVVPLSTLTSWQREFEIWAPE---INVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 582
Query: 438 TTYSIVTNE 446
TTY I+ +
Sbjct: 583 TTYEILLKD 591
Score = 58 (25.5 bits), Expect = 5.8e-15, Sum P(4) = 5.8e-15
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++ L +Q L W+ + + ILAD+ GLGKTI I+ +
Sbjct: 469 NLELRDYQLEGLNWLAHSWCNRSNSV--ILADEMGLGKTIQTISFL 512
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 174 (66.3 bits), Expect = 6.2e-15, Sum P(4) = 6.2e-15
Identities = 54/212 (25%), Positives = 107/212 (50%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W + +DEA +KN + + + ++ R ++GTP+QNS+ +L+S F+
Sbjct: 608 LGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP 667
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + ++ F + +GY+ L VL +LRR K D + +LP K +
Sbjct: 668 EKFEFWEDFEEDH----GKGRENGYQSLHKVLEPFLLRRVKK---DVEK--SLPAKVEQI 718
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK-- 684
+V+ S + +YK + + + +KA A GT + L +++ L++ C+H L+K
Sbjct: 719 LRVEMSALQKQYYKWILT---RNYKALAK-GTRGST-SGFLNIVMELKKCCNHCYLIKPP 773
Query: 685 -EYDFDSVGKISGEMAKRLPRDMLID-LLSRL 714
E + ++ +I + + + +L+D LL+RL
Sbjct: 774 EENERENGQEILLSLIRSSGKLILLDKLLTRL 805
Score = 82 (33.9 bits), Expect = 6.2e-15, Sum P(4) = 6.2e-15
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
++FSQ RMLD++ L ++RLDG++ R +A+ FN D + C L
Sbjct: 813 LIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFL 866
Score = 67 (28.6 bits), Expect = 6.2e-15, Sum P(4) = 6.2e-15
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV----------ELAKYDVVL 437
L+V P S L W RE E P+ ++V++Y G +++ + + K++ ++
Sbjct: 539 LIVVPLSTLTSWQREFEIWAPE---INVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 595
Query: 438 TTYSIVTNE 446
TTY I+ +
Sbjct: 596 TTYEILLKD 604
Score = 59 (25.8 bits), Expect = 6.2e-15, Sum P(4) = 6.2e-15
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++ L +Q L W+ +S ILAD+ GLGKTI I+ +
Sbjct: 483 NLELRDYQLEGLNWLAHSWCKSNSV---ILADEMGLGKTIQTISFL 525
>UNIPROTKB|E2R1M3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:AAEX03003895 EMBL:AAEX03003896 EMBL:AAEX03003897
Ensembl:ENSCAFT00000031086 Uniprot:E2R1M3
Length = 1812
Score = 183 (69.5 bits), Expect = 6.6e-15, Sum P(4) = 6.6e-15
Identities = 50/176 (28%), Positives = 91/176 (51%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W +V+DEA +KN++++ R S + + L+GTP+QN++++L+ FL
Sbjct: 699 LGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTP 758
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + + F IS+ KKL +L MLRR K N+P KT +
Sbjct: 759 ERFNNLEGFLEEFA-DISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----NMPAKTELI 810
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+V+ S+ + +YK + + + F+A G NQ ++L +++ L++ C+HP L
Sbjct: 811 VRVELSQMQKKYYKFILT---RNFEALNSKGGGNQ--VSLLNIMMDLKKCCNHPYL 861
Score = 91 (37.1 bits), Expect = 6.6e-15, Sum P(4) = 6.6e-15
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
++FSQ T+MLDL+E+ L +Y R+DG ++ R A+ FN ++ C L
Sbjct: 907 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 960
Score = 57 (25.1 bits), Expect = 6.6e-15, Sum P(4) = 6.6e-15
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 300 ILADDQGLGKTI-SIIALIQMQRSLQSK 326
ILAD+ GLGKT+ +I+ L + + SK
Sbjct: 585 ILADEMGLGKTVQTIVFLYSLYKEGHSK 612
Score = 50 (22.7 bits), Expect = 6.6e-15, Sum P(4) = 6.6e-15
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV 428
LV P S + W RE E PD V+ Y G ++ +
Sbjct: 616 LVSAPLSTIINWEREFEMWAPD---FYVVTYTGDKESRSVI 653
Score = 45 (20.9 bits), Expect = 2.1e-14, Sum P(4) = 2.1e-14
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 423 RTKDPVELAKYDVVLTTYSIVT 444
R K V++ K+ V+LT+Y ++T
Sbjct: 673 RMKKEVQI-KFHVLLTSYELIT 693
>UNIPROTKB|B4E0W6 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 UniGene:Hs.500526 HGNC:HGNC:17307
EMBL:AL365398 EMBL:AL359198 EMBL:AK303554 IPI:IPI01015564
SMR:B4E0W6 STRING:B4E0W6 Ensembl:ENST00000544642 HOVERGEN:HBG104002
Uniprot:B4E0W6
Length = 677
Score = 133 (51.9 bits), Expect = 6.6e-15, Sum P(4) = 6.6e-15
Identities = 52/184 (28%), Positives = 82/184 (44%)
Query: 516 VLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSF 575
+LDE IKN +T++++A L A R LSGTPIQN++ +L+S F FL + F
Sbjct: 230 ILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQF 289
Query: 576 YSTIKIPI--SRNSLHGYKKLQA-VLRAIMLRRTKGTFI----DGQPIINLPPKTISLTK 628
+ PI SR++ ++ +A VL L R F+ + +LPPK I
Sbjct: 290 AARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYY 349
Query: 629 VDFSKEEWAFYKKLESDSLK-KFKAFADAGTVNQNY--------ANILLMLLRLRQACDH 679
S + Y+ K + T+++ ++ L LR+ C+H
Sbjct: 350 CTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNH 409
Query: 680 PLLV 683
P LV
Sbjct: 410 PALV 413
Score = 85 (35.0 bits), Expect = 6.6e-15, Sum P(4) = 6.6e-15
Identities = 23/75 (30%), Positives = 35/75 (46%)
Query: 833 DLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSL-NQHC--IQYRRLDGTMSLP 889
D NGS++ + + ++F Q MLD+VE+ L H + Y RLDG++
Sbjct: 453 DCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPG 512
Query: 890 ARDRAVKDFNTDREV 904
R V FN D +
Sbjct: 513 QRHSIVSRFNNDPSI 527
Score = 77 (32.2 bits), Expect = 6.6e-15, Sum P(4) = 6.6e-15
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++ L K+Q+ + W+ LH GIL DD GLGKT+ I ++
Sbjct: 90 INAELRKYQQDGVNWLAFLNKYKLH---GILCDDMGLGKTLQSICIL 133
Score = 69 (29.3 bits), Expect = 6.6e-15, Sum P(4) = 6.6e-15
Identities = 16/63 (25%), Positives = 35/63 (55%)
Query: 387 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRTKDPVELAKYDVVLTTYSIVT 444
+LVVCP ++ W E+ K + L+ L Y G R + ++ ++++++ +Y +V
Sbjct: 157 SLVVCPPTLTGHWVDEV-GKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVR 215
Query: 445 NEV 447
N++
Sbjct: 216 NDI 218
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 172 (65.6 bits), Expect = 7.0e-15, Sum P(4) = 7.0e-15
Identities = 53/212 (25%), Positives = 107/212 (50%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W + +DEA +KN + + + ++ R ++GTP+QNS+ +L+S F+
Sbjct: 575 LGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFIMP 634
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + ++ F + +GY+ L VL +LRR K D + +LP K +
Sbjct: 635 EKFEFWEDFEEDH----GKGRENGYQSLHKVLEPFLLRRVKK---DVEK--SLPAKVEQI 685
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK-- 684
+V+ S + +YK + + + +KA A GT + L +++ L++ C+H L+K
Sbjct: 686 LRVEMSALQKQYYKWILT---RNYKALAK-GTRGST-SGFLNIVMELKKCCNHCYLIKPP 740
Query: 685 -EYDFDSVGKISGEMAKRLPRDMLID-LLSRL 714
E + ++ ++ + + + +L+D LL+RL
Sbjct: 741 EENERENGQEVLLSLIRSSGKLILLDKLLTRL 772
Score = 82 (33.9 bits), Expect = 7.0e-15, Sum P(4) = 7.0e-15
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
++FSQ RMLD++ L ++RLDG++ R +A+ FN D + C L
Sbjct: 780 LIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFL 833
Score = 67 (28.6 bits), Expect = 7.0e-15, Sum P(4) = 7.0e-15
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV----------ELAKYDVVL 437
L+V P S L W RE E P+ ++V++Y G +++ + + K++ ++
Sbjct: 506 LIVVPLSTLTSWQREFEIWAPE---INVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 562
Query: 438 TTYSIVTNE 446
TTY I+ +
Sbjct: 563 TTYEILLKD 571
Score = 59 (25.8 bits), Expect = 7.0e-15, Sum P(4) = 7.0e-15
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++ L +Q L W+ +S ILAD+ GLGKTI I+ +
Sbjct: 450 NLELRDYQLEGLNWLAHSWCKSNSV---ILADEMGLGKTIQTISFL 492
>UNIPROTKB|F1MFF9 [details] [associations]
symbol:Bt.62145 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:DAAA02043090 IPI:IPI00688794
Ensembl:ENSBTAT00000010688 Uniprot:F1MFF9
Length = 1852
Score = 183 (69.5 bits), Expect = 7.3e-15, Sum P(4) = 7.3e-15
Identities = 50/176 (28%), Positives = 91/176 (51%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W +V+DEA +KN++++ R S + + L+GTP+QN++++L+ FL
Sbjct: 782 LGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTP 841
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + + F IS+ KKL +L MLRR K N+P KT +
Sbjct: 842 ERFNNLEGFLEEFA-DISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----NMPAKTELI 893
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+V+ S+ + +YK + + + F+A G NQ ++L +++ L++ C+HP L
Sbjct: 894 VRVELSQMQKKYYKFILT---RNFEALNSKGGGNQ--VSLLNIMMDLKKCCNHPYL 944
Score = 91 (37.1 bits), Expect = 7.3e-15, Sum P(4) = 7.3e-15
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
++FSQ T+MLDL+E+ L +Y R+DG ++ R A+ FN ++ C L
Sbjct: 990 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 1043
Score = 57 (25.1 bits), Expect = 7.3e-15, Sum P(4) = 7.3e-15
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 300 ILADDQGLGKTI-SIIALIQMQRSLQSK 326
ILAD+ GLGKT+ +I+ L + + SK
Sbjct: 668 ILADEMGLGKTVQTIVFLYSLYKEGHSK 695
Score = 56 (24.8 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 452 SVDEEEADEKNGETYGLSSEFSVNKKRKK 480
S +EE+ +EK+ E+ G S++S NKK+KK
Sbjct: 6 SENEEDLEEKS-ESEG--SDYSPNKKKKK 31
Score = 50 (22.7 bits), Expect = 7.3e-15, Sum P(4) = 7.3e-15
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV 428
LV P S + W RE E PD V+ Y G ++ +
Sbjct: 699 LVSAPLSTIINWEREFEMWAPD---FYVVTYTGDKESRSVI 736
Score = 45 (20.9 bits), Expect = 2.3e-14, Sum P(4) = 2.3e-14
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 423 RTKDPVELAKYDVVLTTYSIVT 444
R K V++ K+ V+LT+Y ++T
Sbjct: 756 RMKKEVQI-KFHVLLTSYELIT 776
>FB|FBgn0000212 [details] [associations]
symbol:brm "brahma" species:7227 "Drosophila melanogaster"
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=NAS]
[GO:0003713 "transcription coactivator activity" evidence=ISS;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0035060 "brahma
complex" evidence=IDA;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IGI] [GO:0035172 "hemocyte proliferation" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0007474 "imaginal disc-derived wing vein specification"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0008587 "imaginal disc-derived wing margin
morphogenesis" evidence=IMP] [GO:0045742 "positive regulation of
epidermal growth factor receptor signaling pathway" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] [GO:0043974 "histone H3-K27
acetylation" evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045893 GO:GO:0006911 EMBL:AE014296 GO:GO:0003677
GO:GO:0008586 GO:GO:0007474 GO:GO:0048477 GO:GO:0006351
GO:GO:0016887 GO:GO:0007517 GO:GO:0007409 GO:GO:0004386
GO:GO:0045742 GO:GO:0007480 GO:GO:0045749 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0008587 KO:K11647 EMBL:M85049
EMBL:AY095048 EMBL:BT009972 PIR:A42091 RefSeq:NP_536745.4
RefSeq:NP_536746.1 RefSeq:NP_730088.1 RefSeq:NP_730089.1
UniGene:Dm.5356 ProteinModelPortal:P25439 SMR:P25439 DIP:DIP-36728N
IntAct:P25439 MINT:MINT-6541230 STRING:P25439 PaxDb:P25439
EnsemblMetazoa:FBtr0075525 EnsemblMetazoa:FBtr0075526 GeneID:39744
KEGG:dme:Dmel_CG5942 CTD:39744 FlyBase:FBgn0000212
GeneTree:ENSGT00550000074659 InParanoid:P25439 OMA:QKKYTIS
OrthoDB:EOG4K3JB3 PhylomeDB:P25439 ChiTaRS:SMARCA2 GenomeRNAi:39744
NextBio:815155 Bgee:P25439 GermOnline:CG5942 GO:GO:0035060
GO:GO:0070983 GO:GO:0035172 GO:GO:0043974 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 Uniprot:P25439
Length = 1638
Score = 156 (60.0 bits), Expect = 7.5e-15, Sum P(4) = 7.5e-15
Identities = 61/239 (25%), Positives = 115/239 (48%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCS-LRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
LAK+ W +++DE +KNH ++ + + A R L+GTP+QN + +L++ FL
Sbjct: 889 LAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFLL 948
Query: 566 YDPYAVYKSF-------YSTI--KIPISRN-SLHGYKKLQAVLRAIMLRRTKGTFIDGQP 615
+ +F ++T K+ ++ ++ ++L VLR +LRR K ++ Q
Sbjct: 949 PSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE-VEHQ- 1006
Query: 616 IINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL-MLLRLR 674
LP K + K D S + YK ++S + ++ G + A L+ +++LR
Sbjct: 1007 ---LPDKVEYIIKCDMSALQRVLYKHMQSKGVLLTDG-SEKGKHGKGGAKALMNTIVQLR 1062
Query: 675 QACDHPLL---VKEYDFDSVGK---ISGEMAKRLPRDM-LID-LLSRLE-TSSAICCVC 724
+ C+HP + ++E D G +SG R+ L+D +L +L+ T+ + C
Sbjct: 1063 KLCNHPFMFQHIEEKYCDHTGGHGVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFC 1121
Score = 80 (33.2 bits), Expect = 7.5e-15, Sum P(4) = 7.5e-15
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 263 EATLPDGLLSVN-LLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
E + + VN LK +I L W++ +L+ GILAD+ GLGKTI I+L+
Sbjct: 759 EKVVEQASIMVNGTLKEYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTISLV 812
Score = 77 (32.2 bits), Expect = 7.5e-15, Sum P(4) = 7.5e-15
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHG---GSRT-KDPVELAKYDVVLTTYSIV 443
L++ P S L W E E P A+ V+ Y G G R ++ + K++V+LTTY V
Sbjct: 826 LIIVPLSTLPNWVLEFEKWAP---AVGVVSYKGSPQGRRLLQNQMRATKFNVLLTTYEYV 882
Query: 444 TNE 446
+
Sbjct: 883 IKD 885
Score = 67 (28.6 bits), Expect = 7.5e-15, Sum P(4) = 7.5e-15
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++F Q T+ + ++E+ L Y RLDGT R ++ FN
Sbjct: 1118 LLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGELLRKFN 1161
>RGD|1582725 [details] [associations]
symbol:Chd5 "chromodomain helicase DNA binding protein 5"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1582725 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OrthoDB:EOG4WH8JX
IPI:IPI00948282 Ensembl:ENSRNOT00000067364 UCSC:RGD:1582725
ArrayExpress:D4A5U0 Uniprot:D4A5U0
Length = 1940
Score = 183 (69.5 bits), Expect = 8.9e-15, Sum P(4) = 8.9e-15
Identities = 50/176 (28%), Positives = 91/176 (51%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W +V+DEA +KN++++ R S + + L+GTP+QN++++L+ FL
Sbjct: 834 LGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTP 893
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + + F IS+ KKL +L MLRR K N+P KT +
Sbjct: 894 ERFNNLEGFLEEFA-DISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----NMPAKTELI 945
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+V+ S+ + +YK + + + F+A G NQ ++L +++ L++ C+HP L
Sbjct: 946 VRVELSQMQKKYYKFILT---RNFEALNSKGGGNQ--VSLLNIMMDLKKCCNHPYL 996
Score = 91 (37.1 bits), Expect = 8.9e-15, Sum P(4) = 8.9e-15
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
++FSQ T+MLDL+E+ L +Y R+DG ++ R A+ FN ++ C L
Sbjct: 1042 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 1095
Score = 57 (25.1 bits), Expect = 8.9e-15, Sum P(4) = 8.9e-15
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 300 ILADDQGLGKTI-SIIALIQMQRSLQSK 326
ILAD+ GLGKT+ +I+ L + + SK
Sbjct: 720 ILADEMGLGKTVQTIVFLYSLYKEGHSK 747
Score = 50 (22.7 bits), Expect = 8.9e-15, Sum P(4) = 8.9e-15
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV 428
LV P S + W RE E PD V+ Y G ++ +
Sbjct: 751 LVSAPLSTIINWEREFEMWAPD---FYVVTYTGDKESRSVI 788
Score = 50 (22.7 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 452 SVDEEEADEKNGETYGLSSEFSVNKKRKK 480
S +EE+ +EK+ E+ G S++S KK+KK
Sbjct: 75 SENEEDLEEKS-ESEG--SDYSPTKKKKK 100
Score = 45 (20.9 bits), Expect = 2.8e-14, Sum P(4) = 2.8e-14
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 423 RTKDPVELAKYDVVLTTYSIVT 444
R K V++ K+ V+LT+Y ++T
Sbjct: 808 RMKKEVQI-KFHVLLTSYELIT 828
>UNIPROTKB|Q8TDI0 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
EMBL:AF425231 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 OrthoDB:EOG4WH8JX
EMBL:AL035406 EMBL:AL117491 EMBL:AB007913 IPI:IPI00152535
PIR:T17269 RefSeq:NP_056372.1 UniGene:Hs.522898
ProteinModelPortal:Q8TDI0 SMR:Q8TDI0 IntAct:Q8TDI0 STRING:Q8TDI0
PhosphoSite:Q8TDI0 DMDM:51701343 PaxDb:Q8TDI0 PRIDE:Q8TDI0
DNASU:26038 Ensembl:ENST00000262450 GeneID:26038 KEGG:hsa:26038
UCSC:uc001amb.2 CTD:26038 GeneCards:GC01M006096 HGNC:HGNC:16816
HPA:HPA015809 MIM:610771 neXtProt:NX_Q8TDI0 PharmGKB:PA134969178
InParanoid:Q8TDI0 KO:K14435 OMA:KRIDDGD PhylomeDB:Q8TDI0
ChiTaRS:CHD5 GenomeRNAi:26038 NextBio:47863 ArrayExpress:Q8TDI0
Bgee:Q8TDI0 CleanEx:HS_CHD5 Genevestigator:Q8TDI0
GermOnline:ENSG00000116254 Uniprot:Q8TDI0
Length = 1954
Score = 183 (69.5 bits), Expect = 9.2e-15, Sum P(4) = 9.2e-15
Identities = 50/176 (28%), Positives = 91/176 (51%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W +V+DEA +KN++++ R S + + L+GTP+QN++++L+ FL
Sbjct: 836 LGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTP 895
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + + F IS+ KKL +L MLRR K N+P KT +
Sbjct: 896 ERFNNLEGFLEEFA-DISKEDQ--IKKLHDLLGPHMLRRLKADVFK-----NMPAKTELI 947
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+V+ S+ + +YK + + + F+A G NQ ++L +++ L++ C+HP L
Sbjct: 948 VRVELSQMQKKYYKFILT---RNFEALNSKGGGNQ--VSLLNIMMDLKKCCNHPYL 998
Score = 91 (37.1 bits), Expect = 9.2e-15, Sum P(4) = 9.2e-15
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
++FSQ T+MLDL+E+ L +Y R+DG ++ R A+ FN ++ C L
Sbjct: 1044 LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL 1097
Score = 57 (25.1 bits), Expect = 9.2e-15, Sum P(4) = 9.2e-15
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 300 ILADDQGLGKTI-SIIALIQMQRSLQSK 326
ILAD+ GLGKT+ +I+ L + + SK
Sbjct: 722 ILADEMGLGKTVQTIVFLYSLYKEGHSK 749
Score = 56 (24.8 bits), Expect = 3.0e-14, Sum P(3) = 3.0e-14
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 452 SVDEEEADEKNGETYGLSSEFSVNKKRKK 480
S +EE+ +EK+ E+ G S++S NKK+KK
Sbjct: 76 SENEEDLEEKS-ESEG--SDYSPNKKKKK 101
Score = 50 (22.7 bits), Expect = 9.2e-15, Sum P(4) = 9.2e-15
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV 428
LV P S + W RE E PD V+ Y G ++ +
Sbjct: 753 LVSAPLSTIINWEREFEMWAPD---FYVVTYTGDKESRSVI 790
Score = 45 (20.9 bits), Expect = 2.9e-14, Sum P(4) = 2.9e-14
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 423 RTKDPVELAKYDVVLTTYSIVT 444
R K V++ K+ V+LT+Y ++T
Sbjct: 810 RMKKEVQI-KFHVLLTSYELIT 830
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 172 (65.6 bits), Expect = 1.0e-14, Sum P(4) = 1.0e-14
Identities = 53/212 (25%), Positives = 107/212 (50%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W + +DEA +KN + + + ++ R ++GTP+QNS+ +L+S F+
Sbjct: 609 LGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFIMP 668
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + ++ F + +GY+ L VL +LRR K D + +LP K +
Sbjct: 669 EKFEFWEDFEEDH----GKGRENGYQSLHKVLEPFLLRRVKK---DVEK--SLPAKVEQI 719
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK-- 684
+V+ S + +YK + + + +KA A GT + L +++ L++ C+H L+K
Sbjct: 720 LRVEMSALQKQYYKWILT---RNYKALAK-GTRGST-SGFLNIVMELKKCCNHCYLIKPP 774
Query: 685 -EYDFDSVGKISGEMAKRLPRDMLID-LLSRL 714
E + ++ ++ + + + +L+D LL+RL
Sbjct: 775 EENERENGQEVLLSLIRSSGKLILLDKLLTRL 806
Score = 82 (33.9 bits), Expect = 1.0e-14, Sum P(4) = 1.0e-14
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
++FSQ RMLD++ L ++RLDG++ R +A+ FN D + C L
Sbjct: 814 LIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFL 867
Score = 67 (28.6 bits), Expect = 1.0e-14, Sum P(4) = 1.0e-14
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV----------ELAKYDVVL 437
L+V P S L W RE E P+ ++V++Y G +++ + + K++ ++
Sbjct: 540 LIVVPLSTLTSWQREFEIWAPE---INVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 596
Query: 438 TTYSIVTNE 446
TTY I+ +
Sbjct: 597 TTYEILLKD 605
Score = 59 (25.8 bits), Expect = 1.0e-14, Sum P(4) = 1.0e-14
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++ L +Q L W+ +S ILAD+ GLGKTI I+ +
Sbjct: 484 NLELRDYQLEGLNWLAHSWCKSNSV---ILADEMGLGKTIQTISFL 526
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 172 (65.6 bits), Expect = 1.0e-14, Sum P(4) = 1.0e-14
Identities = 53/212 (25%), Positives = 107/212 (50%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W + +DEA +KN + + + ++ R ++GTP+QNS+ +L+S F+
Sbjct: 619 LGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFIMP 678
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + ++ F + +GY+ L VL +LRR K D + +LP K +
Sbjct: 679 EKFEFWEDFEEDH----GKGRENGYQSLHKVLEPFLLRRVKK---DVEK--SLPAKVEQI 729
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK-- 684
+V+ S + +YK + + + +KA A GT + L +++ L++ C+H L+K
Sbjct: 730 LRVEMSALQKQYYKWILT---RNYKALAK-GTRGST-SGFLNIVMELKKCCNHCYLIKPP 784
Query: 685 -EYDFDSVGKISGEMAKRLPRDMLID-LLSRL 714
E + ++ ++ + + + +L+D LL+RL
Sbjct: 785 EENERENGQEVLLSLIRSSGKLILLDKLLTRL 816
Score = 82 (33.9 bits), Expect = 1.0e-14, Sum P(4) = 1.0e-14
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
++FSQ RMLD++ L ++RLDG++ R +A+ FN D + C L
Sbjct: 824 LIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFL 877
Score = 67 (28.6 bits), Expect = 1.0e-14, Sum P(4) = 1.0e-14
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV----------ELAKYDVVL 437
L+V P S L W RE E P+ ++V++Y G +++ + + K++ ++
Sbjct: 550 LIVVPLSTLTSWQREFEIWAPE---INVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 606
Query: 438 TTYSIVTNE 446
TTY I+ +
Sbjct: 607 TTYEILLKD 615
Score = 59 (25.8 bits), Expect = 1.0e-14, Sum P(4) = 1.0e-14
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++ L +Q L W+ +S ILAD+ GLGKTI I+ +
Sbjct: 494 NLELRDYQLEGLNWLAHSWCKSNSV---ILADEMGLGKTIQTISFL 536
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 145 (56.1 bits), Expect = 1.1e-14, Sum P(4) = 1.1e-14
Identities = 43/192 (22%), Positives = 92/192 (47%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCS-LRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
LAK+ W +++DE +KNH ++ + + A RR L+GTP+QN + +L++ FL
Sbjct: 203 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLL 262
Query: 566 ---YDPYAVYKSFYSTI------KIPISRN-SLHGYKKLQAVLRAIMLRRTKGTFIDGQP 615
+ + ++ +++ K+ ++ ++ ++L VLR +LRR K ++ Q
Sbjct: 263 PTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE-VEAQ- 320
Query: 616 IINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQ 675
LP K + K D S + Y+ +++ + ++ +++LR+
Sbjct: 321 ---LPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRK 377
Query: 676 ACDHPLLVKEYD 687
C+HP + + +
Sbjct: 378 ICNHPYMFQHIE 389
Score = 86 (35.3 bits), Expect = 1.1e-14, Sum P(4) = 1.1e-14
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 271 LSVN-LLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L VN +LK +I L W++ +L+ GILAD+ GLGKTI IALI
Sbjct: 81 LMVNGVLKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 126
Score = 69 (29.3 bits), Expect = 1.1e-14, Sum P(4) = 1.1e-14
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
K ++F Q T ++ ++E+ +Y RLDGT R +K FN
Sbjct: 431 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 476
Score = 69 (29.3 bits), Expect = 1.1e-14, Sum P(4) = 1.1e-14
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VELAKYDVVLTTYSIVTNE 446
L++ P S L WA E + P +S R P + K++V+LTTY + +
Sbjct: 140 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKD 199
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 145 (56.1 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 43/192 (22%), Positives = 92/192 (47%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCS-LRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
LAK+ W +++DE +KNH ++ + + A RR L+GTP+QN + +L++ FL
Sbjct: 122 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLL 181
Query: 566 ---YDPYAVYKSFYSTI------KIPISRN-SLHGYKKLQAVLRAIMLRRTKGTFIDGQP 615
+ + ++ +++ K+ ++ ++ ++L VLR +LRR K ++ Q
Sbjct: 182 PTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE-VEAQ- 239
Query: 616 IINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQ 675
LP K + K D S + Y+ +++ + ++ +++LR+
Sbjct: 240 ---LPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRK 296
Query: 676 ACDHPLLVKEYD 687
C+HP + + +
Sbjct: 297 ICNHPYMFQHIE 308
Score = 83 (34.3 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 273 VN-LLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
VN +LK +I L W++ +L+ GILAD+ GLGKTI IALI
Sbjct: 2 VNGVLKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 45
Score = 69 (29.3 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
K ++F Q T ++ ++E+ +Y RLDGT R +K FN
Sbjct: 350 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 395
Score = 69 (29.3 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VELAKYDVVLTTYSIVTNE 446
L++ P S L WA E + P +S R P + K++V+LTTY + +
Sbjct: 59 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKD 118
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 171 (65.3 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 53/212 (25%), Positives = 107/212 (50%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W + +DEA +KN + + + ++ R ++GTP+QNS+ +L+S F+
Sbjct: 588 LGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP 647
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + ++ F + +GY+ L VL +LRR K D + +LP K +
Sbjct: 648 EKFEFWEDFEEDH----GKGRENGYQSLHKVLEPFLLRRVKK---DVEK--SLPAKVEQI 698
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK-- 684
+V+ S + +YK + + + +KA A GT + L +++ L++ C+H L+K
Sbjct: 699 LRVEMSALQKQYYKWILT---RNYKALAK-GTRGST-SGFLNIVMELKKCCNHCHLIKPP 753
Query: 685 -EYDFDSVGKISGEMAKRLPRDMLID-LLSRL 714
E + ++ ++ + + + +L+D LL+RL
Sbjct: 754 EENERENGQEVLLSLIRSSGKLILLDKLLTRL 785
Score = 82 (33.9 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
++FSQ RMLD++ L ++RLDG++ R +A+ FN D + C L
Sbjct: 793 LIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFL 846
Score = 67 (28.6 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV----------ELAKYDVVL 437
L+V P S L W RE E P+ ++V++Y G +++ + + K++ ++
Sbjct: 519 LIVVPLSTLTSWQREFEIWAPE---INVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 575
Query: 438 TTYSIVTNE 446
TTY I+ +
Sbjct: 576 TTYEILLKD 584
Score = 59 (25.8 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
++ L +Q L W+ +S ILAD+ GLGKTI I+ +
Sbjct: 463 NLELRDYQLEGLNWLAHSWCKSNSV---ILADEMGLGKTIQTISFL 505
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 174 (66.3 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 54/212 (25%), Positives = 107/212 (50%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W + +DEA +KN + + + ++ R ++GTP+QNS+ +L+S F+
Sbjct: 606 LGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP 665
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + ++ F + +GY+ L VL +LRR K D + +LP K +
Sbjct: 666 EKFEFWEDFEEDH----GKGRENGYQSLHKVLEPFLLRRVKK---DVEK--SLPAKVEQI 716
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK-- 684
+V+ S + +YK + + + +KA A GT + L +++ L++ C+H L+K
Sbjct: 717 LRVEMSALQKQYYKWILT---RNYKALAK-GTRGST-SGFLNIVMELKKCCNHCYLIKPP 771
Query: 685 -EYDFDSVGKISGEMAKRLPRDMLID-LLSRL 714
E + ++ +I + + + +L+D LL+RL
Sbjct: 772 EENERENGQEILLSLIRSSGKLILLDKLLTRL 803
Score = 82 (33.9 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
++FSQ RMLD++ L ++RLDG++ R +A+ FN D + C L
Sbjct: 811 LIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFL 864
Score = 67 (28.6 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV----------ELAKYDVVL 437
L+V P S L W RE E P+ ++V++Y G +++ + + K++ ++
Sbjct: 537 LIVVPLSTLTSWQREFEIWAPE---INVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 593
Query: 438 TTYSIVTNE 446
TTY I+ +
Sbjct: 594 TTYEILLKD 602
Score = 56 (24.8 bits), Expect = 1.2e-14, Sum P(4) = 1.2e-14
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 300 ILADDQGLGKTISIIALI 317
ILAD+ GLGKTI I+ +
Sbjct: 506 ILADEMGLGKTIQTISFL 523
>DICTYBASE|DDB_G0267556 [details] [associations]
symbol:DDB_G0267556 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0267556
GO:GO:0005524 GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_647125.1 ProteinModelPortal:Q55GQ9
EnsemblProtists:DDB0233433 GeneID:8615929 KEGG:ddi:DDB_G0267556
InParanoid:Q55GQ9 OMA:CANVVIF ProtClustDB:CLSZ2501118
Uniprot:Q55GQ9
Length = 1159
Score = 110 (43.8 bits), Expect = 1.3e-14, Sum P(6) = 1.3e-14
Identities = 45/175 (25%), Positives = 79/175 (45%)
Query: 505 GPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFL 564
G L + + ++LDEAQ IKN ++ + + A R L+GTP+QN++ +L+S FL
Sbjct: 662 GFLKRFDYSFLILDEAQNIKNSDSKRYKNIFKIGAHHRLLLTGTPLQNNLYELWSLLNFL 721
Query: 565 KYDPY-AVYKSFYSTIKIPISRNSLH---GYKKLQAVLRAIMLRRTKGTF-------IDG 613
+ +V K Y ++ + N +++ +L +LRR K T I+
Sbjct: 722 MPHIFGSVKKDNYLLNQL-LEYNGDDCDSAITRMKKILSPFILRRLKSTVSKELKPKIEH 780
Query: 614 QPIINLPPKTISLTK--VDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANI 666
I LP K ++ SK +W +L K+ K +N + ++I
Sbjct: 781 VEICKLPKFQDETYKNIIERSKSQWKLRNELLLKKEKEEKEKEKQSLINSSNSSI 835
Score = 90 (36.7 bits), Expect = 1.3e-14, Sum P(6) = 1.3e-14
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV--ELAK------YDVVLTT 439
LVV PA++L W RE + P +LS++ Y+G R ++ + EL K ++V+LTT
Sbjct: 595 LVVVPATILANWEREFQTWCP---SLSIVRYYGNLREREELRYELKKKRPGKDFNVILTT 651
Query: 440 YSIV 443
Y+++
Sbjct: 652 YNLL 655
Score = 80 (33.2 bits), Expect = 1.3e-14, Sum P(6) = 1.3e-14
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
K ++FSQ TR+LD++E+ L+ + RLDG+ + R + F++ +
Sbjct: 1003 KVLIFSQMTRVLDILEDVLDIFGYNFTRLDGSTPVNERQSIIDHFSSKETI 1053
Score = 78 (32.5 bits), Expect = 1.3e-14, Sum P(6) = 1.3e-14
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 278 HQKIALAWM--LQKETRSLHCLGGILADDQGLGKTISIIALI 317
+Q I L WM L KE + GILAD+ GLGKT+ I+L+
Sbjct: 545 YQLIGLNWMAVLYKEK-----INGILADEMGLGKTVQTISLL 581
Score = 55 (24.4 bits), Expect = 1.3e-14, Sum P(6) = 1.3e-14
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 669 MLLRLRQACDHPLLVKE--YDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSD 726
+L++LR+A +HPLL K Y+ + + I +A + +D D + + + + SD
Sbjct: 898 ILMQLRKAANHPLLCKNIFYNDNQIQDIVNHLATK-DKDWS-DYRNDIPSLKELFDTYSD 955
Query: 727 PPEDSVVTMCGH 738
D T+C H
Sbjct: 956 --YDVFKTVCEH 965
Score = 45 (20.9 bits), Expect = 3.1e-08, Sum P(6) = 3.1e-08
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 455 EEEADEKNGETYGLSSEFSVNKKRK 479
E+E EK ++ SS S+ KKRK
Sbjct: 816 EKEEKEKEKQSLINSSNSSIKKKRK 840
Score = 44 (20.5 bits), Expect = 2.8e-06, Sum P(4) = 2.8e-06
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 454 DEEEADEKNGETYGLSSEFSVNKKRKK 480
DE+E DE++ E SV +++KK
Sbjct: 117 DEDEEDEEDDEDEFNLPNVSVEQRKKK 143
Score = 43 (20.2 bits), Expect = 2.6e-06, Sum P(5) = 2.6e-06
Identities = 17/77 (22%), Positives = 32/77 (41%)
Query: 403 LEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKN 462
+ED D + + + + + ++ K D++ ++ E K D E+ +E+
Sbjct: 317 IEDGEDDLCGIEIEEFKDKKKKVENDKITK-DILGQVDKLLKKETKKVDDSDTEDDEEEE 375
Query: 463 GETYGLSSEFSVNKKRK 479
E VNKKRK
Sbjct: 376 EEEV-----LFVNKKRK 387
Score = 41 (19.5 bits), Expect = 1.3e-14, Sum P(6) = 1.3e-14
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 156 SSVENMNSSQIRDTFGNAYHLAGPSTVNS 184
+S++ +I++ + + + GPSTV S
Sbjct: 221 ASIKKPFGGEIKNDYFSKFLYTGPSTVTS 249
Score = 41 (19.5 bits), Expect = 5.5e-06, Sum P(4) = 5.5e-06
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 440 YSIV-TNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKK 480
+S+V N V + + D E+D + + +S++S ++KR+K
Sbjct: 15 FSMVDVNYVSESENSDNYESDASDYSSDN-NSDYSDSEKRRK 55
Score = 38 (18.4 bits), Expect = 1.1e-05, Sum P(4) = 1.1e-05
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 443 VTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKK 480
VTN KQ S +++ K T + + S KK+K+
Sbjct: 72 VTNT--KQSSTQSLKSNNKKSSTSSNNKKSSPIKKKKQ 107
>TAIR|locus:2054011 [details] [associations]
symbol:CHR8 "chromatin remodeling 8" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0010332 "response to
gamma radiation" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0010332 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AC005724 HOGENOM:HOG000170952 KO:K10841 IPI:IPI00524515
PIR:C84568 RefSeq:NP_179466.1 UniGene:At.39947
ProteinModelPortal:Q9ZV43 SMR:Q9ZV43 STRING:Q9ZV43 PaxDb:Q9ZV43
PRIDE:Q9ZV43 EnsemblPlants:AT2G18760.1 GeneID:816391
KEGG:ath:AT2G18760 TAIR:At2g18760 InParanoid:Q9ZV43 OMA:TETSNIF
PhylomeDB:Q9ZV43 ProtClustDB:CLSN2683061 ArrayExpress:Q9ZV43
Genevestigator:Q9ZV43 Uniprot:Q9ZV43
Length = 1187
Score = 137 (53.3 bits), Expect = 1.8e-14, Sum P(4) = 1.8e-14
Identities = 49/187 (26%), Positives = 82/187 (43%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W VLDE I+N + + C L+ R ++G PIQN + +L+S F F+
Sbjct: 534 LLNIEWGYAVLDEGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFP 593
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQ---AVLRAIMLRRTKGTFIDGQPIINLPPKT 623
V F + +PI+ LQ A A++LR ++ + ++
Sbjct: 594 GKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADV---N 650
Query: 624 ISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNY---ANILLMLLRLRQACDHP 680
LTK K E + L + ++AF + V Q + N L + +R+ C+HP
Sbjct: 651 AHLTK----KTEHVLFCSLTVEQRSTYRAFLASSEVEQIFDGNRNSLYGIDVMRKICNHP 706
Query: 681 -LLVKEY 686
LL +E+
Sbjct: 707 DLLEREH 713
Score = 84 (34.6 bits), Expect = 1.8e-14, Sum P(4) = 1.8e-14
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 275 LLKHQKIALAWMLQKETRSLHC--LGGILADDQGLGKTISIIALI 317
L +Q++ + W+ + LHC GGI+ D+ GLGKTI +++ +
Sbjct: 385 LFDYQRVGVQWLWE-----LHCQRAGGIIGDEMGLGKTIQVLSFL 424
Score = 80 (33.2 bits), Expect = 1.8e-14, Sum P(4) = 1.8e-14
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++FSQ +MLD++E+ L + YRR+DG + R + +FN ++
Sbjct: 747 LLFSQTQQMLDILESFLVANEYSYRRMDGLTPVKQRMALIDEFNNSEDM 795
Score = 70 (29.7 bits), Expect = 1.8e-14, Sum P(4) = 1.8e-14
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 387 TLVVCPASVLRQWARELEDKVPD 409
++++CP ++LRQW RE + PD
Sbjct: 436 SIIICPVTLLRQWRREAQKWYPD 458
Score = 37 (18.1 bits), Expect = 3.5e-10, Sum P(4) = 3.5e-10
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 772 SKTTLKNCVSDDGGGSPTDSPFADKSG-ILDNE 803
S T L + +G TD DK+G +D E
Sbjct: 931 SDTQLALHKTAEGSSEQTDVEMTDKTGEAMDEE 963
>FB|FBgn0250786 [details] [associations]
symbol:Chd1 "Chromodomain-helicase-DNA-binding protein 1"
species:7227 "Drosophila melanogaster" [GO:0005705 "polytene
chromosome interband" evidence=IDA] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005703 "polytene chromosome puff" evidence=IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0035042 "fertilization,
exchange of chromosomal proteins" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
EMBL:AE014134 GO:GO:0006355 GO:GO:0003677 GO:GO:0048477
GO:GO:0006351 GO:GO:0003682 GO:GO:0004386 GO:GO:0007476
InterPro:IPR016197 SUPFAM:SSF54160 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598 GO:GO:0005703
InterPro:IPR025260 Pfam:PF13907 EMBL:L77907 PIR:T13944
RefSeq:NP_477197.1 ProteinModelPortal:Q7KU24 SMR:Q7KU24
STRING:Q7KU24 PaxDb:Q7KU24 PRIDE:Q7KU24 EnsemblMetazoa:FBtr0077674
GeneID:33505 KEGG:dme:Dmel_CG3733 UCSC:CG3733-RA CTD:1105
FlyBase:FBgn0250786 GeneTree:ENSGT00560000076896 InParanoid:Q7KU24
KO:K11367 OrthoDB:EOG45MKM5 PhylomeDB:Q7KU24 ChiTaRS:CHD1
GenomeRNAi:33505 NextBio:783939 Bgee:Q7KU24 GO:GO:0005705
GO:GO:0035042 Uniprot:Q7KU24
Length = 1883
Score = 166 (63.5 bits), Expect = 1.9e-14, Sum P(4) = 1.9e-14
Identities = 56/223 (25%), Positives = 111/223 (49%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W +++DEA +KN + + ++ R ++GTP+QNS+ +L++ F+
Sbjct: 650 LGTLQWAALLVDEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPLQNSLKELWALLHFIMP 709
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
D + +++F ++ GY +L L +LRR K D + +LP K +
Sbjct: 710 DKFDTWENF----EVQHGNAEDKGYTRLHQQLEPYILRRVKK---DVEK--SLPAKVEQI 760
Query: 627 TKVDFSKEEWAFYKKLES---DSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLV 683
+V+ + + +YK + + D+L+K K G+ + + NI++ L++ C+H L+
Sbjct: 761 LRVEMTSLQKQYYKWILTKNFDALRKGKR----GSTS-TFLNIVI---ELKKCCNHAALI 812
Query: 684 KEYDFDSVGKISGEMAKRLPRD----MLID-LLSRL-ETSSAI 720
+ +F+ +G E + L + +L+D LL RL ET +
Sbjct: 813 RPSEFELMGLQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRV 855
Score = 84 (34.6 bits), Expect = 1.9e-14, Sum P(4) = 1.9e-14
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
++FSQ RMLD++ + L + ++RLDG++ R +A+ FN + ++ C L
Sbjct: 856 LIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGEMRRQALDHFNAEGSQDFCFL 909
Score = 65 (27.9 bits), Expect = 1.9e-14, Sum P(4) = 1.9e-14
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVEL----------AKYDVVL 437
L V P S + W RE + PD ++V+ Y G ++++ ++ K++ +L
Sbjct: 581 LCVVPLSTMTAWQREFDLWAPD---MNVVTYLGDIKSRELIQQYEWQFESSKRLKFNCIL 637
Query: 438 TTYSIVTNE 446
TTY IV +
Sbjct: 638 TTYEIVLKD 646
Score = 63 (27.2 bits), Expect = 1.9e-14, Sum P(4) = 1.9e-14
Identities = 22/60 (36%), Positives = 28/60 (46%)
Query: 258 NQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
NQP+ L GL L +Q L W+L + ILAD+ GLGKTI I +
Sbjct: 517 NQPEF---LSSGL---TLRDYQMDGLNWLLHSWCKENSV---ILADEMGLGKTIQTICFL 567
>ZFIN|ZDB-GENE-091113-61 [details] [associations]
symbol:si:dkey-76p7.6 "si:dkey-76p7.6" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-091113-61 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 GO:GO:0035861 GeneTree:ENSGT00630000089890
EMBL:BX927385 IPI:IPI00901431 Ensembl:ENSDART00000113101
Bgee:E7F1C4 Uniprot:E7F1C4
Length = 954
Score = 106 (42.4 bits), Expect = 2.1e-14, Sum P(4) = 2.1e-14
Identities = 46/191 (24%), Positives = 87/191 (45%)
Query: 516 VLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSF 575
V DE +KN + R ++ AK R L+GTP+QN++ +L S F+ + ++ S
Sbjct: 558 VFDEGHLLKNMNSLRYRHLMAINAKYRLLLTGTPLQNNLLELMSLLNFIMPNMFSSSTSQ 617
Query: 576 YS---TIKIPISRNSLHGYKKLQA--VLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVD 630
+ ++K ++S + A +++ +LRR K + LP K +
Sbjct: 618 IAKMFSMKSSEEQSSFERDRITHAKLIMKPFILRRVKSEVLK-----QLPAKEEQVEFCA 672
Query: 631 FSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKE-YDFD 689
S+ + Y L L K K ++ + N+++ +LR+ +HPLL ++ Y +
Sbjct: 673 MSERQQELYSAL----LHKLKHSSNGE--KRELTNVMM---QLRKMSNHPLLHRQFYTTE 723
Query: 690 SVGKISGEMAK 700
+ +S M K
Sbjct: 724 KLKAMSKLMLK 734
Score = 105 (42.0 bits), Expect = 2.1e-14, Sum P(4) = 2.1e-14
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
++FSQ+T MLD++E L H +Y RLDG+ + R + FNTD+++
Sbjct: 802 VLFSQFTMMLDILEVFLRHHKHRYNRLDGSTPMSDRIGLIDQFNTDQDI 850
Score = 82 (33.9 bits), Expect = 2.1e-14, Sum P(4) = 2.1e-14
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 265 TLPDGLLSVNLLK-HQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
T P+ L S LK +Q I L W++ L GILAD+ GLGKTI I+ +
Sbjct: 418 TQPEILSSTFQLKPYQLIGLNWLVLLHQNKL---SGILADEMGLGKTIQAISFL 468
Score = 75 (31.5 bits), Expect = 2.1e-14, Sum P(4) = 2.1e-14
Identities = 17/61 (27%), Positives = 34/61 (55%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV------ELAKYDVVLTTYS 441
L+ PAS L W REL P + VL+Y+G + + + ++ +Y+++++TY+
Sbjct: 481 LITVPASTLDNWVRELNLWCP---SFKVLVYYGSADDRKYMRYEILNQIVEYNIIVSTYN 537
Query: 442 I 442
+
Sbjct: 538 L 538
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 134 (52.2 bits), Expect = 2.1e-14, Sum P(5) = 2.1e-14
Identities = 47/192 (24%), Positives = 91/192 (47%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK--- 565
+V W +VLDEAQ +K+ + + + + R L+GTPIQN++ +L++ F+
Sbjct: 639 RVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL 698
Query: 566 YDPYAVYKSFYSTI-------KIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIIN 618
+D + + ++S K I N L +L +L+ MLRR K ++ +
Sbjct: 699 FDSHEEFNEWFSKDIESHAENKSAIDENQL---SRLHMILKPFMLRRIKKD-VENE---- 750
Query: 619 LPPKTISLTKVDFSKEEWAFYKKLESD-SLKKFKAFADAGTVN-QNYANILL-MLLRLRQ 675
L K L + + Y+ L++ S++ + T QN + L+ ++++ R+
Sbjct: 751 LSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRK 810
Query: 676 ACDHPLLVKEYD 687
C+HP L + +
Sbjct: 811 VCNHPELFERQE 822
Score = 88 (36.0 bits), Expect = 2.1e-14, Sum P(5) = 2.1e-14
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
+++SQ TRM+DL+E + Y RLDG+ + R V DF T ++
Sbjct: 1118 LIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQTRNDI 1166
Score = 72 (30.4 bits), Expect = 2.1e-14, Sum P(5) = 2.1e-14
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 257 LNQPKVEA--TLPDGLLSVNLLK-HQKIALAWMLQKETRSLHCLGGILADDQGLGKTISI 313
L P + A +P + LK +Q + W+ + ++ GILAD+ GLGKT+
Sbjct: 499 LANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGIN---GILADEMGLGKTVQS 555
Query: 314 IALI 317
IAL+
Sbjct: 556 IALL 559
Score = 71 (30.1 bits), Expect = 2.1e-14, Sum P(5) = 2.1e-14
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGG--SRTKDPV---ELAKYDVVLTTYSI 442
L++ PAS L W +E VP VL Y G R K + A + VV+T+Y +
Sbjct: 573 LIISPASTLNNWHQEFTRFVPK---FKVLPYWGNPHDRKKKKTLYTQDAPFHVVITSYQL 629
Query: 443 VTNEV 447
V +V
Sbjct: 630 VVQDV 634
Score = 53 (23.7 bits), Expect = 2.1e-14, Sum P(5) = 2.1e-14
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 120 IANVASADYEKISSQ-QALKRTLPAFPQPHSLNTKS-KSSVENMNSSQIRDT------FG 171
+ N+ DY+ + QALK A+ H T+S + ++ +R FG
Sbjct: 436 VVNITQEDYDSNHFKAQALKNAENAY-HIHQARTRSFDEDAKESRAAALRAADKSGSGFG 494
Query: 172 NAYHLAGPS 180
+Y LA PS
Sbjct: 495 ESYSLANPS 503
Score = 37 (18.1 bits), Expect = 8.4e-05, Sum P(5) = 8.4e-05
Identities = 41/192 (21%), Positives = 79/192 (41%)
Query: 556 DLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKL-------QAVLRAIMLRR--T 606
+ +S F + PY + K Y +I + +S + K+ + +++ R+
Sbjct: 822 ETWSPFH-ISLKPYEISKFIYRHGQIRVFNHSRDRWLKVLLSPFAPDYIQQSLFHRKGIN 880
Query: 607 KGTFIDGQPIINLPPKTISLTKVDFSKEEW-AFYKKLESD-SLKKFKAFADA-GTVNQNY 663
+G+ I++ P ++ + W A + L++ L + +++ + G +Q Y
Sbjct: 881 EGSCFSFLRFIDVSPAEMANLMLQGLLARWLALFLSLKASYRLHQLRSWGEPDGESHQRY 940
Query: 664 A---NILLML---LRLRQACDHPLLVKEYDFDSVGK-ISGEMAKRLPRDMLIDLLSRLET 716
+ LL + L C PLL K F S K +SG D ++ R T
Sbjct: 941 LRNKDFLLGVDFPLSFPNLCSCPLL-KSLVFSSHCKAVSGYS------DQVVHQW-RSAT 992
Query: 717 SSAICCVCSDPP 728
SS CC+ ++ P
Sbjct: 993 SSLRCCLLTELP 1004
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 136 (52.9 bits), Expect = 2.7e-14, Sum P(4) = 2.7e-14
Identities = 47/197 (23%), Positives = 96/197 (48%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSL-RAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
L+K W +++DE +KN +++++ R + R L+GTP+QN++ +L++ F+
Sbjct: 586 LSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGTPLQNNLPELWALLNFVL 645
Query: 566 ---YDPYAVYKSFYSTI--------KIPISRN-SLHGYKKLQAVLRAIMLRRTKGTFIDG 613
++ ++ +++T K+ ++ +L ++L VLR +LRR K ++
Sbjct: 646 PKIFNSAKTFEDWFNTPFANTGTQEKLELTEEETLLIIRRLHKVLRPFLLRRLKKE-VEK 704
Query: 614 QPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLM---L 670
+LP K + K S + Y+++ LK F AGT I + +
Sbjct: 705 ----DLPDKVEKVIKCKLSGLQQQLYQQM----LKHNALFVGAGTEGATKGGIKGLNNKI 756
Query: 671 LRLRQACDHPLLVKEYD 687
++LR+ C+HP + E +
Sbjct: 757 MQLRKICNHPFVFDEVE 773
Score = 85 (35.0 bits), Expect = 2.7e-14, Sum P(4) = 2.7e-14
Identities = 23/51 (45%), Positives = 29/51 (56%)
Query: 267 PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
P L+ L ++Q L WM+ H L GILAD+ GLGKTI I+LI
Sbjct: 462 PSILVGGTLKEYQLRGLEWMVSLYNN--H-LNGILADEMGLGKTIQSISLI 509
Score = 77 (32.2 bits), Expect = 2.7e-14, Sum P(4) = 2.7e-14
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE----LAKYDVVLTTYSIV 443
LV+ P S + W E E P +L+ +IY G + ++ + +DV+LTTY +
Sbjct: 523 LVIVPLSTITNWTLEFEKWAP---SLNTIIYKGTPNQRHSLQHQIRVGNFDVLLTTYEYI 579
Query: 444 TNE 446
+
Sbjct: 580 IKD 582
Score = 74 (31.1 bits), Expect = 2.7e-14, Sum P(4) = 2.7e-14
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++F Q T+++D++E+ L ++Y RLDG+ R + FN
Sbjct: 811 LMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFN 854
>UNIPROTKB|J9PA15 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
Pfam:PF00176 GO:GO:0005524 GO:GO:0003677 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:AAEX03004381 EMBL:AAEX03004385 EMBL:AAEX03004386
EMBL:AAEX03004382 EMBL:AAEX03004383 EMBL:AAEX03004384
EMBL:AAEX03004387 EMBL:AAEX03004388 Ensembl:ENSCAFT00000048702
Uniprot:J9PA15
Length = 1555
Score = 181 (68.8 bits), Expect = 2.9e-14, Sum P(3) = 2.9e-14
Identities = 53/178 (29%), Positives = 94/178 (52%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK---YDP 568
W ++LDEAQ IKN ++Q ++ + ++RR L+GTP+QNS+ +L+S FL +
Sbjct: 746 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 805
Query: 569 YAVYKSFYS---TIKIPISRNSLHGY-KKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTI 624
+ +K ++S T I S+ G K+L VLR +LRR K +D + +P K
Sbjct: 806 HREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVK---VDVEK--QMPKKYE 860
Query: 625 SLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+ + SK + Y + + K + A ++ +++ +L++LR+ C+HP L
Sbjct: 861 HVIRCRLSKRQRCLYDDFMAQTTTK-ETLATG-----HFMSVINILMQLRKVCNHPNL 912
Score = 89 (36.4 bits), Expect = 2.9e-14, Sum P(3) = 2.9e-14
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 261 KVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+V+ +P LL L ++Q I L W++ + L+ GILAD+ GLGKTI I+L+
Sbjct: 611 QVKTPIPL-LLRGQLREYQHIGLDWLVTMYEKKLN---GILADEMGLGKTIQTISLL 663
Score = 57 (25.1 bits), Expect = 2.9e-14, Sum P(3) = 2.9e-14
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELA-----KYDVVLTTYSI 442
L++ P SV+ W EL+ P + +L Y+G + + + V +T+Y +
Sbjct: 677 LIIVPTSVMLNWEMELKRWCP---SFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKL 733
Query: 443 VTNE 446
V +
Sbjct: 734 VLQD 737
Score = 39 (18.8 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 450 QPSVDEEEADEKNGETYGLSSEFSVNKKRKKI 481
QP +EEE DE+ E +R++I
Sbjct: 290 QPQEEEEEDDEETIEVEEQQEGNDAETQRREI 321
Score = 37 (18.1 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 445 NEVPKQPSVDEEEADEKNGETYGLS-SEFSVNKKRKK 480
+E ++ S +EE+ + ET G S SE S +++ ++
Sbjct: 501 SESAEEQSEEEEDEHSEEEETSGSSESEESESEESEE 537
>FB|FBgn0035689 [details] [associations]
symbol:CG7376 species:7227 "Drosophila melanogaster"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF00176 PROSITE:PS50005 PROSITE:PS50089
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
Prosite:PS00518 GO:GO:0005524 GO:GO:0022008 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR017907
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 EMBL:BT001896
ProteinModelPortal:Q8IG89 PaxDb:Q8IG89 PRIDE:Q8IG89
FlyBase:FBgn0035689 InParanoid:Q8IG89 OrthoDB:EOG470RZ4
ArrayExpress:Q8IG89 Bgee:Q8IG89 Uniprot:Q8IG89
Length = 1285
Score = 115 (45.5 bits), Expect = 3.2e-14, Sum P(5) = 3.2e-14
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 384 AAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT--KDPVELAKYDVVLTTYS 441
+ T++V P ++ QW E+ + +L VL+Y G T P +LA+YDVVLT Y+
Sbjct: 349 SGATIIVSPNAIKMQWFEEIHKHI--SPSLKVLLYFGLHSTFWVSPFDLAQYDVVLTDYT 406
Query: 442 IVTNEV 447
I+ NE+
Sbjct: 407 ILRNEI 412
Score = 110 (43.8 bits), Expect = 3.2e-14, Sum P(5) = 3.2e-14
Identities = 46/190 (24%), Positives = 83/190 (43%)
Query: 506 PLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
PL V W+RV LDEAQ +++ + A L A RW ++GT ID+L F+
Sbjct: 436 PLLMVNWWRVCLDEAQMVESSTSAAAEMVRMLPAINRWAVTGT-----IDELPPLLEFVG 490
Query: 566 YDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+ T+ N + + L +L + R K ++ + + +PP+T
Sbjct: 491 RPEVCRPPDAWQTVDKAFQLN--YKCEPLLELLEHSLWRTCKSK-VEHE--LGIPPQTEV 545
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAF--------AD----AGTVNQNYANILLM-LLR 672
+ +++ S E +Y++ ++F A AD +++ I+L LR
Sbjct: 546 VHRLELSNVESLYYREEHLKCHEQFLAAVAKHTRHNADNSSCLASISPQLLRIILKPFLR 605
Query: 673 LRQACDHPLL 682
+RQ C P++
Sbjct: 606 IRQTCSVPVV 615
Score = 79 (32.9 bits), Expect = 3.2e-14, Sum P(5) = 3.2e-14
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 268 DGLLSVNLLKHQKIALAWMLQKETRSLHCL-GGILADDQGLGKTISIIALIQMQRSLQSK 326
DG+ V KH+ + ++E + GGILAD+ GLGKT+ +A++ M Q
Sbjct: 207 DGITRV--FKHKYCLQFYPFEEEIPKISLPPGGILADEMGLGKTVEFLAMLLMNPRPQDS 264
Query: 327 SKTE 330
+ +
Sbjct: 265 YRND 268
Score = 55 (24.4 bits), Expect = 3.2e-14, Sum P(5) = 3.2e-14
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYR 880
K IVFSQW +L + +L+ + IQ+R
Sbjct: 1140 KIIVFSQWQAILIEIARALSLNGIQFR 1166
Score = 54 (24.1 bits), Expect = 3.2e-14, Sum P(5) = 3.2e-14
Identities = 16/58 (27%), Positives = 22/58 (37%)
Query: 711 LSRLETSSAI--CCVCSDPPEDSVVTM-CGHVFCYQCASEYI--TGDDNMCPAPRCKE 763
L L+ SA C +C + V M CGH C C G + P C++
Sbjct: 1040 LKHLKEDSADKPCPICQTQDDVRYVMMVCGHFVCQHCLDSMRRKNGRAGVTKCPLCRQ 1097
Score = 40 (19.1 bits), Expect = 2.3e-10, Sum P(5) = 2.3e-10
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 266 LPDGLLSVNLLKHQKIALAWMLQKE 290
LP S L K+Q+ ++WML +E
Sbjct: 167 LPKRFQS-QLRKYQQRTVSWMLGRE 190
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 132 (51.5 bits), Expect = 3.2e-14, Sum P(4) = 3.2e-14
Identities = 48/223 (21%), Positives = 103/223 (46%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKR-RWCLSGTPIQNSIDDLYSYFRFLK 565
L+++ W +++DE +KN ++++ + + R R L+GTP+QN++ +L++ F+
Sbjct: 533 LSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWALLNFVL 592
Query: 566 YDPYAVYKSFYSTIKIPISRN------------SLHGYKKLQAVLRAIMLRRTKGTFIDG 613
+ KSF P + SL ++L VLR +LRR K ++
Sbjct: 593 PRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESLLVIRRLHKVLRPFLLRRLKKD-VEA 651
Query: 614 QPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRL 673
+ LP K + + S + Y +++ + + DA + +++L
Sbjct: 652 E----LPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYVE---DAKRGKTGIKGLQNTVMQL 704
Query: 674 RQACDHPLLVKE---------YDFDSVGKISG--EMAKR-LPR 704
++ C+HP + ++ +++D + ++SG E+ R LP+
Sbjct: 705 KKICNHPFVFEDVERSIDPTGFNYDMLWRVSGKFELLDRILPK 747
Score = 104 (41.7 bits), Expect = 3.2e-14, Sum P(4) = 3.2e-14
Identities = 38/107 (35%), Positives = 50/107 (46%)
Query: 212 SLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLI-YQAALEDLNQPKVEATLPDGL 270
SL V +QFG + AY D R D+R I Y ++ + E P L
Sbjct: 359 SLAAAVKVQQSQFG---ESAYDE-DMDRRMNPEDDRKIDYYNVAHNIREVVTEQ--PSIL 412
Query: 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+ L ++Q L WM+ H L GILAD+ GLGKTI I+LI
Sbjct: 413 VGGKLKEYQLRGLQWMISLYNN--H-LNGILADEMGLGKTIQTISLI 456
Score = 70 (29.7 bits), Expect = 3.2e-14, Sum P(4) = 3.2e-14
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKD---P-VELAKYDVVLTTYSIV 443
LV+ P S L W E E P ++ ++Y G + + P V + + V+LTTY +
Sbjct: 470 LVIVPLSTLTNWTMEFERWAP---SIVKIVYKGPPQVRKALHPQVRHSNFQVLLTTYEYI 526
Query: 444 TNEVP 448
+ P
Sbjct: 527 IKDRP 531
Score = 63 (27.2 bits), Expect = 3.2e-14, Sum P(4) = 3.2e-14
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
++F Q T++++++E+ L+ +Y RLDG+ R + + FN
Sbjct: 756 LMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKLLGVFN 799
Score = 50 (22.7 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 563 FLKYDPYAVYKSFYSTIKIPIS----RNSLHG--YKKLQAVLRAIM 602
FL+ +Y +Y IK PI+ R ++G YK L+A+ +M
Sbjct: 1092 FLELPSKKLYPDYYMIIKSPIALDAIRKHINGTFYKTLEAMKSDLM 1137
>UNIPROTKB|F1P0A4 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR020838 Pfam:PF00176 Pfam:PF13892 GO:GO:0005524
GO:GO:0003677 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016817 GeneTree:ENSGT00680000100002 EMBL:AADN02016239
EMBL:AADN02016240 IPI:IPI00819661 Ensembl:ENSGALT00000038610
ArrayExpress:F1P0A4 Uniprot:F1P0A4
Length = 469
Score = 177 (67.4 bits), Expect = 3.4e-14, Sum P(3) = 3.4e-14
Identities = 53/177 (29%), Positives = 89/177 (50%)
Query: 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDP 568
K W +V+DEA IKN +++++ + R L+GTP+QN++ +L++ FL D
Sbjct: 284 KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDV 343
Query: 569 YAVYKSFYSTIKIPISRNSLHGYK---KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTIS 625
+ + F S + N L K +L VLR +LRR K D + +LPPK
Sbjct: 344 FNSSEDFDSWFD---TNNCLGDQKLVERLHMVLRPFLLRRIKA---DVEK--SLPPKKEV 395
Query: 626 LTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
V SK + +Y ++ +K AG +++ +L +L++LR+ C+HP L
Sbjct: 396 KIYVGLSKMQREWYTRI---LMKDIDILNSAGKLDK--MRLLNILMQLRKCCNHPYL 447
Score = 69 (29.3 bits), Expect = 3.4e-14, Sum P(3) = 3.4e-14
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L +Q L W++ ++ GILAD+ GLGKT+ I+L+
Sbjct: 165 LRDYQVRGLNWLISLYENGIN---GILADEMGLGKTLQTISLL 204
Score = 59 (25.8 bits), Expect = 3.4e-14, Sum P(3) = 3.4e-14
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT---KDPVELAKYDVVLTTYSIVT 444
+V+ P S L W E + VP A+ LI R +D + ++DV +T+Y ++
Sbjct: 218 MVLVPKSTLHNWMNEFKRWVPTLRAVC-LIGDKDQRAAFVRDVLLPGEWDVCVTSYEMLI 276
Query: 445 NE 446
E
Sbjct: 277 KE 278
Score = 44 (20.5 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 179 PSTVNSKGYIRDYYVKKNDDDIMMYEG--NRILPSSLMHGKSV 219
PS V G +RDY V+ + I +YE N IL + GK++
Sbjct: 157 PSYVKW-GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTL 198
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 145 (56.1 bits), Expect = 3.4e-14, Sum P(4) = 3.4e-14
Identities = 43/192 (22%), Positives = 92/192 (47%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCS-LRAKRRWCLSGTPIQNSIDDLYSYFRFLK 565
LAK+ W +++DE +KNH ++ + + A RR L+GTP+QN + +L++ FL
Sbjct: 669 LAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLL 728
Query: 566 ---YDPYAVYKSFYSTI------KIPISRN-SLHGYKKLQAVLRAIMLRRTKGTFIDGQP 615
+ + ++ +++ K+ ++ ++ ++L VLR +LRR K ++ Q
Sbjct: 729 PTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE-VEAQ- 786
Query: 616 IINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQ 675
LP K + K D S + Y+ +++ + ++ +++LR+
Sbjct: 787 ---LPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRK 843
Query: 676 ACDHPLLVKEYD 687
C+HP + + +
Sbjct: 844 ICNHPYMFQHIE 855
Score = 86 (35.3 bits), Expect = 3.4e-14, Sum P(4) = 3.4e-14
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 271 LSVN-LLKHQKI-ALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
L VN +LK +I L W++ +L+ GILAD+ GLGKTI IALI
Sbjct: 547 LMVNGVLKQYQIKGLEWLVSLYNNNLN---GILADEMGLGKTIQTIALI 592
Score = 69 (29.3 bits), Expect = 3.4e-14, Sum P(4) = 3.4e-14
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 854 KSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFN 899
K ++F Q T ++ ++E+ +Y RLDGT R +K FN
Sbjct: 897 KVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 942
Score = 69 (29.3 bits), Expect = 3.4e-14, Sum P(4) = 3.4e-14
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VELAKYDVVLTTYSIVTNE 446
L++ P S L WA E + P +S R P + K++V+LTTY + +
Sbjct: 606 LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKD 665
Score = 56 (24.8 bits), Expect = 3.3e-11, Sum P(4) = 3.3e-11
Identities = 24/80 (30%), Positives = 36/80 (45%)
Query: 252 AALEDLNQPKVEAT---LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLG 308
A L L+Q + T P GL V +L+ ++ L + + L L G LA D
Sbjct: 139 APLVPLHQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTK 198
Query: 309 KTISIIAL--IQMQRSLQSK 326
TI + AL + QR L+ +
Sbjct: 199 ATIELKALRLLNFQRQLRQE 218
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 162 (62.1 bits), Expect = 3.5e-14, Sum P(5) = 3.5e-14
Identities = 53/200 (26%), Positives = 96/200 (48%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLK- 565
L K+ W ++LDEAQ IK+ ++ + S + R L+GTPIQNS+ +L++ F+
Sbjct: 830 LQKMKWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMP 889
Query: 566 --YDPYAVYKSFYST-IKIPISRNSL---HGYKKLQAVLRAIMLRRTKGTFIDGQPIINL 619
+D + + ++S I+ N+ ++L +L+ MLRR K + + L
Sbjct: 890 SLFDSHDEFNEWFSKDIESHAEANTKLNQQQLRRLHMILKPFMLRRVKKN-VQSE----L 944
Query: 620 PPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQ--NYA-------NILLML 670
K D ++ + Y+ L+S + A +A T + N A N++ +
Sbjct: 945 GDKIEIDVLCDLTQRQAKLYQVLKSQISTNYDAIENAATNDSTSNSASNSGSDQNLINAV 1004
Query: 671 LRLRQACDHPLLVKEYDFDS 690
++ R+ C+HP L + D DS
Sbjct: 1005 MQFRKVCNHPDLFERADVDS 1024
Score = 80 (33.2 bits), Expect = 3.5e-14, Sum P(5) = 3.5e-14
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV 904
+++ Q T+M+DL+E L + RLDG+ L R V D+ T+ E+
Sbjct: 1319 LIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDLVHDWQTNPEI 1367
Score = 72 (30.4 bits), Expect = 3.5e-14, Sum P(5) = 3.5e-14
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 270 LLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALI 317
+L+ L ++Q L W+ + ++ GILAD+ GLGKT+ I+++
Sbjct: 701 ILACTLKEYQLKGLNWLANLYDQGIN---GILADEMGLGKTVQSISVL 745
Score = 56 (24.8 bits), Expect = 3.5e-14, Sum P(5) = 3.5e-14
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK 425
LVV PAS L W E+ +P +L Y G + +
Sbjct: 759 LVVTPASTLHNWVNEISKFLPQ---FKILPYWGNANDR 793
Score = 43 (20.2 bits), Expect = 3.5e-14, Sum P(5) = 3.5e-14
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 107 NKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAF 144
NKN Q + R N DY I S+ +K TL +
Sbjct: 344 NKNKHQ-KIKKRRFTNCIVTDYNPIDSKLNIKITLKQY 380
>UNIPROTKB|F5GWX5 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AC006064
IPI:IPI00000846 HGNC:HGNC:1919 ChiTaRS:CHD4
ProteinModelPortal:F5GWX5 SMR:F5GWX5 PRIDE:F5GWX5
Ensembl:ENST00000544040 UCSC:uc001qpn.3 ArrayExpress:F5GWX5
Bgee:F5GWX5 Uniprot:F5GWX5
Length = 1905
Score = 173 (66.0 bits), Expect = 3.5e-14, Sum P(5) = 3.5e-14
Identities = 46/176 (26%), Positives = 88/176 (50%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W +++DEA +KN++++ R + + L+GTP+QN++++L+ FL
Sbjct: 855 LGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTP 914
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + + F + + KKL +L MLRR K N+P KT +
Sbjct: 915 ERFHNLEGFLEEFADIAKEDQI---KKLHDMLGPHMLRRLKADVFK-----NMPSKTELI 966
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+V+ S + +YK + + + F+A G NQ ++L +++ L++ C+HP L
Sbjct: 967 VRVELSPMQKKYYKYILT---RNFEALNARGGGNQ--VSLLNVVMDLKKCCNHPYL 1017
Score = 98 (39.6 bits), Expect = 3.5e-14, Sum P(5) = 3.5e-14
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 850 EGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
EG + ++FSQ T+MLDL+E+ L +Y R+DG ++ R A+ FN ++ C L
Sbjct: 1057 EGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFL 1116
Score = 52 (23.4 bits), Expect = 3.5e-14, Sum P(5) = 3.5e-14
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 300 ILADDQGLGKTI-SIIALIQMQRSLQSK 326
ILAD+ GLGKT+ + + L + + SK
Sbjct: 741 ILADEMGLGKTVQTAVFLYSLYKEGHSK 768
Score = 48 (22.0 bits), Expect = 3.5e-14, Sum P(5) = 3.5e-14
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHG 420
LV P S + W RE E PD + V+ Y G
Sbjct: 772 LVSAPLSTIINWEREFEMWAPD---MYVVTYVG 801
Score = 47 (21.6 bits), Expect = 3.5e-14, Sum P(5) = 3.5e-14
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 422 SRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVD 454
SR K + K+ V+LT+Y ++T ++ S+D
Sbjct: 828 SRMKKEASV-KFHVLLTSYELITIDMAILGSID 859
Score = 40 (19.1 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 441 SIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKK 480
+++ N +P +EE+ +E ET + + KK KK
Sbjct: 22 ALLNNSLPPPHPENEEDPEEDLSETE--TPKLKKKKKPKK 59
>ZFIN|ZDB-GENE-081104-186 [details] [associations]
symbol:si:ch211-227i14.2 "si:ch211-227i14.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
Pfam:PF00176 PROSITE:PS51194 SMART:SM00717 ZFIN:ZDB-GENE-081104-186
GO:GO:0005524 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR017877
PROSITE:PS50090 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 EMBL:AL929056
EMBL:CABZ01053382 EMBL:CABZ01053383 IPI:IPI00890401
Ensembl:ENSDART00000111655 Bgee:F1Q5V1 Uniprot:F1Q5V1
Length = 3108
Score = 143 (55.4 bits), Expect = 3.6e-14, Sum P(3) = 3.6e-14
Identities = 47/179 (26%), Positives = 90/179 (50%)
Query: 512 WFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAV 571
W +VLDE Q IKN + ++++++R L TP+QN++ +L++ FL
Sbjct: 1183 WKHLVLDEVQLIKNMTEKHWETIFNIKSQQRILLINTPLQNTLKELWTMIHFLLPGITHP 1242
Query: 572 YKSFYSTIKIPISRNSLHGYK---KLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTK 628
Y +F IK +N + +K +L +++ +LRR+K ++ Q +P K + K
Sbjct: 1243 YLNF--PIKPGTDQNQDYCHKLVIRLHRMIQPFILRRSKRD-VEKQ----MPKKYEHILK 1295
Query: 629 VDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYD 687
SK + + Y+ D L + A ++ +L +L++L++ C+HP L++ D
Sbjct: 1296 CRLSKRQKSMYE----DIL--IQPSAQEALKTGHFVRVLEVLMQLQKICNHPDLIQPRD 1348
Score = 100 (40.3 bits), Expect = 3.6e-14, Sum P(3) = 3.6e-14
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 856 IVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREV-CSL 907
++F+Q MLD++E+ L+ + Y RLD ++SL R VK +N +R++ C++
Sbjct: 1889 LIFTQMASMLDILESFLDHRHLTYVRLDESLSLEERQEQVKKYNRNRQIFCTI 1941
Score = 94 (38.1 bits), Expect = 3.6e-14, Sum P(3) = 3.6e-14
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 252 AALEDLNQPKVEA--TL-----PDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADD 304
AA DL PK A TL P LL +L ++Q++ + W+ ++L+ GILAD+
Sbjct: 1031 AAATDLILPKGSARTTLTSRSSPPSLLHGSLREYQQVGVEWLASLHRKNLN---GILADE 1087
Query: 305 QGLGKTISIIA 315
GLGKT+ +A
Sbjct: 1088 TGLGKTVQTVA 1098
Score = 37 (18.1 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 224 FGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLP 267
FG PS + S S + G + + +++ + K+E P
Sbjct: 286 FGVPSTIPPSSPSRSNSSQGLSSQSLTPTSMKKMQPKKLEEIAP 329
>UNIPROTKB|Q14839 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005813 "centrosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 EMBL:X86691
EMBL:AC006064 EMBL:BC038596 IPI:IPI00000846 IPI:IPI00455210
RefSeq:NP_001264.2 UniGene:Hs.162233 PDB:1MM2 PDB:1MM3 PDB:2EE1
PDB:2L5U PDB:2L75 PDBsum:1MM2 PDBsum:1MM3 PDBsum:2EE1 PDBsum:2L5U
PDBsum:2L75 ProteinModelPortal:Q14839 SMR:Q14839 DIP:DIP-31183N
IntAct:Q14839 MINT:MINT-349766 STRING:Q14839 PhosphoSite:Q14839
DMDM:311033360 PaxDb:Q14839 PRIDE:Q14839 DNASU:1108
Ensembl:ENST00000309577 Ensembl:ENST00000357008
Ensembl:ENST00000544484 GeneID:1108 KEGG:hsa:1108 UCSC:uc001qpo.3
UCSC:uc001qpp.3 CTD:1108 GeneCards:GC12M006679 H-InvDB:HIX0201859
HGNC:HGNC:1919 HPA:HPA012008 MIM:603277 neXtProt:NX_Q14839
PharmGKB:PA26455 KO:K11643 OMA:ERMLLCR OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EvolutionaryTrace:Q14839 GenomeRNAi:1108 NextBio:4598
PMAP-CutDB:Q14839 ArrayExpress:Q14839 Bgee:Q14839 CleanEx:HS_CHD4
Genevestigator:Q14839 GermOnline:ENSG00000111642 Uniprot:Q14839
Length = 1912
Score = 173 (66.0 bits), Expect = 3.6e-14, Sum P(5) = 3.6e-14
Identities = 46/176 (26%), Positives = 88/176 (50%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W +++DEA +KN++++ R + + L+GTP+QN++++L+ FL
Sbjct: 862 LGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTP 921
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + + F + + KKL +L MLRR K N+P KT +
Sbjct: 922 ERFHNLEGFLEEFADIAKEDQI---KKLHDMLGPHMLRRLKADVFK-----NMPSKTELI 973
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+V+ S + +YK + + + F+A G NQ ++L +++ L++ C+HP L
Sbjct: 974 VRVELSPMQKKYYKYILT---RNFEALNARGGGNQ--VSLLNVVMDLKKCCNHPYL 1024
Score = 98 (39.6 bits), Expect = 3.6e-14, Sum P(5) = 3.6e-14
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 850 EGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
EG + ++FSQ T+MLDL+E+ L +Y R+DG ++ R A+ FN ++ C L
Sbjct: 1064 EGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFL 1123
Score = 52 (23.4 bits), Expect = 3.6e-14, Sum P(5) = 3.6e-14
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 300 ILADDQGLGKTI-SIIALIQMQRSLQSK 326
ILAD+ GLGKT+ + + L + + SK
Sbjct: 748 ILADEMGLGKTVQTAVFLYSLYKEGHSK 775
Score = 48 (22.0 bits), Expect = 3.6e-14, Sum P(5) = 3.6e-14
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHG 420
LV P S + W RE E PD + V+ Y G
Sbjct: 779 LVSAPLSTIINWEREFEMWAPD---MYVVTYVG 808
Score = 47 (21.6 bits), Expect = 3.6e-14, Sum P(5) = 3.6e-14
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 422 SRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVD 454
SR K + K+ V+LT+Y ++T ++ S+D
Sbjct: 835 SRMKKEASV-KFHVLLTSYELITIDMAILGSID 866
Score = 40 (19.1 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 441 SIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKK 480
+++ N +P +EE+ +E ET + + KK KK
Sbjct: 22 ALLNNSLPPPHPENEEDPEEDLSETE--TPKLKKKKKPKK 59
>UNIPROTKB|E2RHA0 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 EMBL:AAEX03015287 RefSeq:XP_867754.2
Ensembl:ENSCAFT00000023774 GeneID:477714 KEGG:cfa:477714
Uniprot:E2RHA0
Length = 1912
Score = 173 (66.0 bits), Expect = 3.6e-14, Sum P(5) = 3.6e-14
Identities = 46/176 (26%), Positives = 88/176 (50%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W +++DEA +KN++++ R + + L+GTP+QN++++L+ FL
Sbjct: 862 LGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTP 921
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + + F + + KKL +L MLRR K N+P KT +
Sbjct: 922 ERFHNLEGFLEEFADIAKEDQI---KKLHDMLGPHMLRRLKADVFK-----NMPSKTELI 973
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+V+ S + +YK + + + F+A G NQ ++L +++ L++ C+HP L
Sbjct: 974 VRVELSPMQKKYYKYILT---RNFEALNARGGGNQ--VSLLNVVMDLKKCCNHPYL 1024
Score = 98 (39.6 bits), Expect = 3.6e-14, Sum P(5) = 3.6e-14
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 850 EGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
EG + ++FSQ T+MLDL+E+ L +Y R+DG ++ R A+ FN ++ C L
Sbjct: 1064 EGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFL 1123
Score = 52 (23.4 bits), Expect = 3.6e-14, Sum P(5) = 3.6e-14
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 300 ILADDQGLGKTI-SIIALIQMQRSLQSK 326
ILAD+ GLGKT+ + + L + + SK
Sbjct: 748 ILADEMGLGKTVQTAVFLYSLYKEGHSK 775
Score = 48 (22.0 bits), Expect = 3.6e-14, Sum P(5) = 3.6e-14
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHG 420
LV P S + W RE E PD + V+ Y G
Sbjct: 779 LVSAPLSTIINWEREFEMWAPD---MYVVTYVG 808
Score = 47 (21.6 bits), Expect = 3.6e-14, Sum P(5) = 3.6e-14
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 422 SRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVD 454
SR K + K+ V+LT+Y ++T ++ S+D
Sbjct: 835 SRMKKEASV-KFHVLLTSYELITIDMAILGSID 866
>UNIPROTKB|F1SLR5 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 OMA:ERMLLCR EMBL:CU914489 EMBL:GACC01000070
RefSeq:XP_003126577.3 UniGene:Ssc.25044 Ensembl:ENSSSCT00000000759
GeneID:100515610 KEGG:ssc:100515610 Uniprot:F1SLR5
Length = 1912
Score = 173 (66.0 bits), Expect = 3.6e-14, Sum P(5) = 3.6e-14
Identities = 46/176 (26%), Positives = 88/176 (50%)
Query: 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566
L + W +++DEA +KN++++ R + + L+GTP+QN++++L+ FL
Sbjct: 862 LGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTP 921
Query: 567 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 626
+ + + F + + KKL +L MLRR K N+P KT +
Sbjct: 922 ERFHNLEGFLEEFADIAKEDQI---KKLHDMLGPHMLRRLKADVFK-----NMPSKTELI 973
Query: 627 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLL 682
+V+ S + +YK + + + F+A G NQ ++L +++ L++ C+HP L
Sbjct: 974 VRVELSPMQKKYYKYILT---RNFEALNARGGGNQ--VSLLNVVMDLKKCCNHPYL 1024
Score = 98 (39.6 bits), Expect = 3.6e-14, Sum P(5) = 3.6e-14
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 850 EGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTD--REVCSL 907
EG + ++FSQ T+MLDL+E+ L +Y R+DG ++ R A+ FN ++ C L
Sbjct: 1064 EGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFL 1123
Score = 52 (23.4 bits), Expect = 3.6e-14, Sum P(5) = 3.6e-14
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 300 ILADDQGLGKTI-SIIALIQMQRSLQSK 326
ILAD+ GLGKT+ + + L + + SK
Sbjct: 748 ILADEMGLGKTVQTAVFLYSLYKEGHSK 775
Score = 48 (22.0 bits), Expect = 3.6e-14, Sum P(5) = 3.6e-14
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 388 LVVCPASVLRQWARELEDKVPDKAALSVLIYHG 420
LV P S + W RE E PD + V+ Y G
Sbjct: 779 LVSAPLSTIINWEREFEMWAPD---MYVVTYVG 808
Score = 47 (21.6 bits), Expect = 3.6e-14, Sum P(5) = 3.6e-14
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 422 SRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVD 454
SR K + K+ V+LT+Y ++T ++ S+D
Sbjct: 835 SRMKKEASV-KFHVLLTSYELITIDMAILGSID 866
WARNING: HSPs involving 237 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 907 828 0.00079 122 3 11 22 0.42 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 487
No. of states in DFA: 624 (66 KB)
Total size of DFA: 405 KB (2197 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 70.66u 0.19s 70.85t Elapsed: 00:00:04
Total cpu time: 70.72u 0.19s 70.91t Elapsed: 00:00:04
Start: Tue May 21 14:31:32 2013 End: Tue May 21 14:31:36 2013
WARNINGS ISSUED: 2