Query 002565
Match_columns 907
No_of_seqs 315 out of 2345
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 17:13:17 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002565.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1281-1285//hhsearch_pdb/002565hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 1.0 1 1 509.4 23.9 381 266-902 228-622 (800)
2 1z3i_X Similar to RAD54-like; 1.0 1 1 505.1 27.6 393 270-903 51-467 (644)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 467.0 30.6 366 268-907 31-397 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 339.7 20.6 352 271-907 150-560 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 256.1 25.0 395 272-907 7-423 (494)
6 4a2w_A RIG-I, retinoic acid in 1.0 1 1 224.7 20.4 173 272-562 246-430 (936)
7 2fwr_A DNA repair protein RAD2 1.0 1 1 218.0 8.6 307 271-907 90-398 (472)
8 4a2q_A RIG-I, retinoic acid in 1.0 1 1 217.8 21.3 172 272-561 246-429 (797)
9 4a2p_A RIG-I, retinoic acid in 1.0 1 1 212.2 17.7 169 272-558 5-185 (556)
10 3tbk_A RIG-I helicase domain; 1.0 1 1 210.8 20.0 171 273-561 3-186 (555)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=509.36 Aligned_cols=381 Identities=25% Similarity=0.418 Sum_probs=301.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf 89875446672679999999998210366666851231788845899999999731002331022203421112568988
Q 002565 266 LPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDD 345 (907)
Q Consensus 266 ~P~~~l~~~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (907)
.|+......|+|||+.|+.||+.... ...||||||+||||||+|+|+++......
T Consensus 228 ~p~~~~~~~Lr~yQ~egv~~l~~~~~---~~~~~ILademGlGKT~~ai~~i~~l~~~---------------------- 282 (800)
T 3mwy_W 228 QPPFIKGGELRDFQLTGINWMAFLWS---KGDNGILADEMGLGKTVQTVAFISWLIFA---------------------- 282 (800)
T ss_dssp CCTTCCSSCCCTHHHHHHHHHHHHHT---TTCCEEECCCTTSSTTHHHHHHHHHHHHH----------------------
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHHH----------------------
T ss_conf 99865799758999999999999851---38998998278753299999999999986----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
Q ss_conf 88888675332236988899998776655333368899997399968245999999999769999980899996899888
Q 002565 346 DDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTK 425 (907)
Q Consensus 346 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~ 425 (907)
....+++|||||.+++.||.+||.+|++ .+++.+|+|....+
T Consensus 283 -----------------------------------~~~~~~~LIV~P~sll~qW~~E~~~~~p---~~~v~~~~g~~~~r 324 (800)
T 3mwy_W 283 -----------------------------------RRQNGPHIIVVPLSTMPAWLDTFEKWAP---DLNCICYMGNQKSR 324 (800)
T ss_dssp -----------------------------------HSCCSCEEEECCTTTHHHHHHHHHHHST---TCCEEECCCSSHHH
T ss_pred -----------------------------------CCCCCCEEEEECCHHHHHHHHHHHHHCC---CCEEEEEECCHHHH
T ss_conf -----------------------------------0779988999880389999999999779---96499982777778
Q ss_pred CC--------------CCCCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 90--------------0017984999140102012799999745676421155457750233444421001000124578
Q 002565 426 DP--------------VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKG 491 (907)
Q Consensus 426 ~~--------------~~l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~ 491 (907)
.. .....++||||||+++.++.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~-------------------------------------------- 360 (800)
T 3mwy_W 325 DTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDR-------------------------------------------- 360 (800)
T ss_dssp HHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTH--------------------------------------------
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHH--------------------------------------------
T ss_conf 898887762263001344566788990699998649--------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 88887887666888863234039998357656993108999999400281489726675464135665677533678875
Q 002565 492 KKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAV 571 (907)
Q Consensus 492 ~k~~~~~~~~~~~~~L~~i~w~rVILDEAH~IKN~~s~~skA~~~L~a~~Rw~LTGTPiqN~l~DL~sll~FL~~~~~~~ 571 (907)
..|..+.|.+||+||||++||..++.++++..+++.+||+|||||++|++.|||++++||.|+.|..
T Consensus 361 -------------~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~ 427 (800)
T 3mwy_W 361 -------------AELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTI 427 (800)
T ss_dssp -------------HHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC--
T ss_pred -------------HHHHCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf -------------9983377325641344441471019999999752243897227857799999999999858663674
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 68899671455545855667999999999875613464247987447999707999917989999999999999999999
Q 002565 572 YKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK 651 (907)
Q Consensus 572 ~~~F~~~~~~pi~~~~~~~~~~Lq~lL~~~mLRRtK~dv~~g~pii~LP~k~~~vv~v~lS~eEr~lY~~l~~~~~~~~~ 651 (907)
...|..... ..........|+.++.++++||+|.++.. .||++.+.++.|+|++.|+.+|..+.......+.
T Consensus 428 ~~~~~~~~~---~~~~~~~~~~L~~~l~p~~lRR~k~dv~~-----~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~ 499 (800)
T 3mwy_W 428 DQEIDFENQ---DEEQEEYIHDLHRRIQPFILRRLKKDVEK-----SLPSKTERILRVELSDVQTEYYKNILTKNYSALT 499 (800)
T ss_dssp -------CC---TTHHHHHHHHHHHTTGGGEEECCGGGGTT-----TSCCEEEEEEEECCCHHHHHHHHHHHHHCCC---
T ss_pred HHHHCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_conf 344232223---14689999999999757775320876643-----1688279999707999999999999999999986
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99831876310999999999999962892032433555322221898611994689999974101453234468999995
Q 002565 652 AFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDS 731 (907)
Q Consensus 652 ~~~~~g~~~~~~~~iL~~L~rLRqic~HP~Lv~~~~~~~~~~~~~e~~k~l~~e~~~~ll~~le~~~~~C~iC~d~~e~p 731 (907)
... ..+...++..+++||++|+||.++............. .....+..
T Consensus 500 ~~~-----~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~---~~~~~~~~------------------------ 547 (800)
T 3mwy_W 500 AGA-----KGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGD---GKMTRENV------------------------ 547 (800)
T ss_dssp ------------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC-------CCSHHH------------------------
T ss_pred HCC-----CCCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCC---CCCCHHHH------------------------
T ss_conf 103-----5454469999999998735865423557899886156---65557788------------------------
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 12346752331112110259999899864336457552011012234568899999999954566787678766446999
Q 002565 732 VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRT 811 (907)
Q Consensus 732 vit~C~H~fC~~Ci~~~~~~~~~~CP~~~C~~~l~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~SsKi~a 811 (907)
.......|+|+.+
T Consensus 548 -------------------------------------------------------------------~~~l~~~s~K~~~ 560 (800)
T 3mwy_W 548 -------------------------------------------------------------------LRGLIMSSGKMVL 560 (800)
T ss_dssp -------------------------------------------------------------------HHHHHHTCHHHHH
T ss_pred -------------------------------------------------------------------HHHHHHCCHHHHH
T ss_conf -------------------------------------------------------------------8876642769999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
Q ss_conf 99999975310587641222012488898754578998899629999143333999999997589819999726998999
Q 002565 812 VLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPAR 891 (907)
Q Consensus 812 LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVIVFSQft~~LdiLe~~L~~~gi~~~rldGsms~~~R 891 (907)
|.++|..+...++ ||||||||+.++++|+..|...|+.+.+|+|+|+..+|
T Consensus 561 L~~lL~~~~~~g~-----------------------------kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR 611 (800)
T 3mwy_W 561 LDQLLTRLKKDGH-----------------------------RVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQR 611 (800)
T ss_dssp HHHHHHHHTTTTC-----------------------------CEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHH
T ss_pred HHHHHHHHHHCCC-----------------------------EEEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
T ss_conf 9999999752798-----------------------------18999635999999999998679978999699999999
Q ss_pred HHHHHHHCCCC
Q ss_conf 99999722899
Q 002565 892 DRAVKDFNTDR 902 (907)
Q Consensus 892 ~~~I~~F~~dp 902 (907)
+.+|+.|++..
T Consensus 612 ~~~i~~F~~~~ 622 (800)
T 3mwy_W 612 RISIDHFNSPD 622 (800)
T ss_dssp HHHHHTTSSTT
T ss_pred HHHHHHHHCCC
T ss_conf 99999960899
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=505.14 Aligned_cols=393 Identities=25% Similarity=0.343 Sum_probs=301.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCC--CCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCC
Q ss_conf 544667267999999999821036--666685123178884589999999973100233102220342111256898888
Q 002565 270 LLSVNLLKHQKIALAWMLQKETRS--LHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDD 347 (907)
Q Consensus 270 ~l~~~L~~hQk~gl~wml~~e~~~--~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (907)
.+...|+|||+.|+.||+...... ....|||||||||||||+|+|+++........
T Consensus 51 ~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~---------------------- 108 (644)
T 1z3i_X 51 VLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSP---------------------- 108 (644)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCT----------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC----------------------
T ss_conf 6400351999999999998423354458887596107874299999999999997486----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC
Q ss_conf 88867533223698889999877665533336889999739996824599999999976999998089999689988890
Q 002565 348 NGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP 427 (907)
Q Consensus 348 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~ 427 (907)
......+++|||||.+++.||.+||.+|++. .+.++.++++.+....
T Consensus 109 -------------------------------~~~p~~~~~LiV~P~sll~qW~~E~~~~~~~--~~~~~~~~~g~~~~~~ 155 (644)
T 1z3i_X 109 -------------------------------DCKPEIDKVIVVSPSSLVRNWYNEVGKWLGG--RVQPVAIDGGSKDEID 155 (644)
T ss_dssp -------------------------------TSSCSCSCEEEEECHHHHHHHHHHHHHHHGG--GCCEEEECSSCHHHHH
T ss_pred -------------------------------CCCCCCCCEEEEECHHHHHHHHHHHHHHCCC--CEEEEEEECCCHHHHH
T ss_conf -------------------------------6567778579996589988799999997588--7259998089889999
Q ss_pred ---C-------CCCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf ---0-------017984999140102012799999745676421155457750233444421001000124578888878
Q 002565 428 ---V-------ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVN 497 (907)
Q Consensus 428 ---~-------~l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~ 497 (907)
. ....++|+||||+++..+..
T Consensus 156 ~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~------------------------------------------------- 186 (644)
T 1z3i_X 156 SKLVNFISQQGMRIPTPILIISYETFRLHAE------------------------------------------------- 186 (644)
T ss_dssp HHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT-------------------------------------------------
T ss_pred HHHHHHHHHCCCCCCCCEEEEEHHHHHHHHH-------------------------------------------------
T ss_conf 9999998733777787579963899876578-------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 87666888863234039998357656993108999999400281489726675464135665677533678875688996
Q 002565 498 SSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYS 577 (907)
Q Consensus 498 ~~~~~~~~~L~~i~w~rVILDEAH~IKN~~s~~skA~~~L~a~~Rw~LTGTPiqN~l~DL~sll~FL~~~~~~~~~~F~~ 577 (907)
.|....|++||+||||++||..++.++++..+.+.+||+|||||+||++.|||++++||.|++|+++..|.+
T Consensus 187 --------~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~ 258 (644)
T 1z3i_X 187 --------VLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKK 258 (644)
T ss_dssp --------TTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHH
T ss_pred --------HHHCCCCCEEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf --------750488657998786224780459999998555673799846734588999999998618876899999998
Q ss_pred HHCCCCCCCC------------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 7145554585------------5667999999999875613464247987447999707999917989999999999999
Q 002565 578 TIKIPISRNS------------LHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESD 645 (907)
Q Consensus 578 ~~~~pi~~~~------------~~~~~~Lq~lL~~~mLRRtK~dv~~g~pii~LP~k~~~vv~v~lS~eEr~lY~~l~~~ 645 (907)
.|..|+.++. ...+.+|+.++.+|++||++.++.. .||++.+.++.|+|++.|+++|+.+...
T Consensus 259 ~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~-----~LP~k~~~~v~~~ls~~q~~lY~~~~~~ 333 (644)
T 1z3i_X 259 RFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSK-----YLPVKIEQVVCCNLTPLQKELYKLFLKQ 333 (644)
T ss_dssp HTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGG-----TSCCEEEEEEEECCCHHHHHHHHHHHHH
T ss_pred HHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 63261541677677888999999999999999889998710876764-----2798369999837998999999999998
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999831876310999999999999962892032433555322221898611994689999974101453234468
Q 002565 646 SLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCS 725 (907)
Q Consensus 646 ~~~~~~~~~~~g~~~~~~~~iL~~L~rLRqic~HP~Lv~~~~~~~~~~~~~e~~k~l~~e~~~~ll~~le~~~~~C~iC~ 725 (907)
.... ...........++..+++|||+|+||.++....... +...
T Consensus 334 ~~~~-----~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~------------------------~~~~------- 377 (644)
T 1z3i_X 334 AKPV-----ESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTG------------------------EEGF------- 377 (644)
T ss_dssp HCGG-----GSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHT------------------------CTTC-------
T ss_pred HHHH-----HHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCC------------------------CCHH-------
T ss_conf 9999-----987627621459999999999957999888887415------------------------4003-------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999512346752331112110259999899864336457552011012234568899999999954566787678766
Q 002565 726 DPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYI 805 (907)
Q Consensus 726 d~~e~pvit~C~H~fC~~Ci~~~~~~~~~~CP~~~C~~~l~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 805 (907)
+ .++. ..| .. ..........
T Consensus 378 ---~-------------~~~~--------~~~------------------------~~------------~~~~~~~~~~ 397 (644)
T 1z3i_X 378 ---D-------------GALD--------LFP------------------------QN------------YSTKAVEPQL 397 (644)
T ss_dssp ---T-------------TGGG--------TSC------------------------SS------------CCSSSCCGGG
T ss_pred ---H-------------HHHH--------HCC------------------------CC------------CCCCCCCCCC
T ss_conf ---5-------------5776--------454------------------------21------------1100057011
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 44699999999975310587641222012488898754578998899629999143333999999997589819999726
Q 002565 806 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 885 (907)
Q Consensus 806 SsKi~aLlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVIVFSQft~~LdiLe~~L~~~gi~~~rldGs 885 (907)
|+|+..+..++..+.... ..|+||||||+.++++|+..|...|+.+.+++|+
T Consensus 398 s~K~~~l~~ll~~~~~~~----------------------------~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~ 449 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRTTT----------------------------SDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGT 449 (644)
T ss_dssp SHHHHHHHHHHHHHHHHC----------------------------CCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSS
T ss_pred CHHHHHHHHHHHHHHHCC----------------------------CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 748999999999986469----------------------------9879999805999999999999779978998399
Q ss_pred CCHHHHHHHHHHHCCCCC
Q ss_conf 998999999997228999
Q 002565 886 MSLPARDRAVKDFNTDRE 903 (907)
Q Consensus 886 ms~~~R~~~I~~F~~dp~ 903 (907)
|+..+|++++++|++++.
T Consensus 450 ~~~~~R~~~i~~F~~~~~ 467 (644)
T 1z3i_X 450 MSIKKRAKIVERFNNPSS 467 (644)
T ss_dssp CCHHHHHHHHHHHHSTTC
T ss_pred CCHHHHHHHHHHHCCCCC
T ss_conf 999999999999639999
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=467.02 Aligned_cols=366 Identities=31% Similarity=0.474 Sum_probs=308.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCC
Q ss_conf 87544667267999999999821036666685123178884589999999973100233102220342111256898888
Q 002565 268 DGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDD 347 (907)
Q Consensus 268 ~~~l~~~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (907)
+..+...|+|||+.|+.||+..... ..||||||+||+|||+++|+++......
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~~~---~~~~ilad~~GlGKT~~ai~~i~~~~~~------------------------ 83 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMNKL---GFGICLADDMGLGKTLQTIAVFSDAKKE------------------------ 83 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHT---TCCEEECCCTTSCHHHHHHHHHHHHHHT------------------------
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHHHC------------------------
T ss_conf 8332003369999999999997417---9988998089973899999999988755------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC
Q ss_conf 88867533223698889999877665533336889999739996824599999999976999998089999689988890
Q 002565 348 NGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP 427 (907)
Q Consensus 348 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~ 427 (907)
.+.+++|||||.+++.||.+||.+|++ .+++.+++|....
T Consensus 84 ----------------------------------~~~~~~LIv~P~~l~~qw~~e~~~~~~---~~~v~~~~g~~~~--- 123 (500)
T 1z63_A 84 ----------------------------------NELTPSLVICPLSVLKNWEEELSKFAP---HLRFAVFHEDRSK--- 123 (500)
T ss_dssp ----------------------------------TCCSSEEEEECSTTHHHHHHHHHHHCT---TSCEEECSSSTTS---
T ss_pred ----------------------------------CCCCCEEEECCHHHHHHHHHHHHHHCC---CCEEEEEECCCHH---
T ss_conf ----------------------------------899978999038999999999999779---9559997267021---
Q ss_pred CCCCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00179849991401020127999997456764211554577502334444210010001245788888788766688886
Q 002565 428 VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPL 507 (907)
Q Consensus 428 ~~l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L 507 (907)
.....++|||+||+++.++. .+
T Consensus 124 ~~~~~~~ivi~t~~~l~~~~----------------------------------------------------------~l 145 (500)
T 1z63_A 124 IKLEDYDIILTTYAVLLRDT----------------------------------------------------------RL 145 (500)
T ss_dssp CCGGGSSEEEEEHHHHTTCH----------------------------------------------------------HH
T ss_pred CCCCCCCEEEEEHHHHHCCC----------------------------------------------------------HH
T ss_conf 00357768996379972630----------------------------------------------------------21
Q ss_pred CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 32340399983576569931089999994002814897266754641356656775336788756889967145554585
Q 002565 508 AKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNS 587 (907)
Q Consensus 508 ~~i~w~rVILDEAH~IKN~~s~~skA~~~L~a~~Rw~LTGTPiqN~l~DL~sll~FL~~~~~~~~~~F~~~~~~pi~~~~ 587 (907)
....|++||+||||.+||..++.++++..+.+.+||+|||||++|++.|||++++||.|++|+++..|...|..|+..+.
T Consensus 146 ~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~ 225 (500)
T 1z63_A 146 KEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD 225 (500)
T ss_dssp HTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 17872879980841017876899999996004718997467777999999999998587757998999998525111466
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 56679999999998756134642479874479997079999179899999999999999999999983187631099999
Q 002565 588 LHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANIL 667 (907)
Q Consensus 588 ~~~~~~Lq~lL~~~mLRRtK~dv~~g~pii~LP~k~~~vv~v~lS~eEr~lY~~l~~~~~~~~~~~~~~g~~~~~~~~iL 667 (907)
......|+.++.++++||++.+.. ....||++.+..+.++|++.|+.+|+.+.......+. ......+...++
T Consensus 226 ~~~~~~l~~~l~~~~lrr~k~~~~---~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~----~~~~~~~~~~~~ 298 (500)
T 1z63_A 226 NMAKEELKAIISPFILRRTKYDKA---IINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNID----SVTGIKRKGMIL 298 (500)
T ss_dssp HHHHHHHHHHHTTTEECCCTTCHH---HHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTT----TCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHEEEECCCCCC---HHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH----HHHCCCCHHHHH
T ss_conf 889999999976674550255424---1122999758999818999999999999999999998----642321067999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99999999628920324335553222218986119946899999741014532344689999951234675233111211
Q 002565 668 LMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASE 747 (907)
Q Consensus 668 ~~L~rLRqic~HP~Lv~~~~~~~~~~~~~e~~k~l~~e~~~~ll~~le~~~~~C~iC~d~~e~pvit~C~H~fC~~Ci~~ 747 (907)
..+++|||+|+||.++.....
T Consensus 299 ~~l~~lr~~~~~p~l~~~~~~----------------------------------------------------------- 319 (500)
T 1z63_A 299 STLLKLKQIVDHPALLKGGEQ----------------------------------------------------------- 319 (500)
T ss_dssp HHHHHHHHHTTCTHHHHCSCC-----------------------------------------------------------
T ss_pred HHHHHHHHHHCCHHHHCCCCC-----------------------------------------------------------
T ss_conf 999999988179988438520-----------------------------------------------------------
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 02599998998643364575520110122345688999999999545667876787664469999999997531058764
Q 002565 748 YITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCS 827 (907)
Q Consensus 748 ~~~~~~~~CP~~~C~~~l~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~SsKi~aLlelL~~~~~~~~~~~ 827 (907)
....++|+..+++++..+...+.
T Consensus 320 ------------------------------------------------------~~~~s~K~~~l~~~l~~~~~~~~--- 342 (500)
T 1z63_A 320 ------------------------------------------------------SVRRSGKMIRTMEIIEEALDEGD--- 342 (500)
T ss_dssp ------------------------------------------------------CSTTCHHHHHHHHHHHHHHTTTC---
T ss_pred ------------------------------------------------------HHHCCHHHHHHHHHHHHHHCCCC---
T ss_conf ------------------------------------------------------11115529999999999872688---
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 122201248889875457899889962999914333399999999758-9819999726998999999997228999635
Q 002565 828 IVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQH-CIQYRRLDGTMSLPARDRAVKDFNTDREVCS 906 (907)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~KVIVFSQft~~LdiLe~~L~~~-gi~~~rldGsms~~~R~~~I~~F~~dp~v~V 906 (907)
|+||||+|+.+++.|+..|... |+.+.+++|+|+..+|++++++|+++++++|
T Consensus 343 --------------------------k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~v 396 (500)
T 1z63_A 343 --------------------------KIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKF 396 (500)
T ss_dssp --------------------------CEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCC
T ss_pred --------------------------CEEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCE
T ss_conf --------------------------689997218899999999988538876999799999999999999608999877
Q ss_pred C
Q ss_conf 9
Q 002565 907 L 907 (907)
Q Consensus 907 L 907 (907)
+
T Consensus 397 i 397 (500)
T 1z63_A 397 I 397 (500)
T ss_dssp C
T ss_pred E
T ss_conf 9
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=339.72 Aligned_cols=352 Identities=17% Similarity=0.208 Sum_probs=246.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 44667267999999999821036666685123178884589999999973100233102220342111256898888888
Q 002565 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (907)
Q Consensus 271 l~~~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (907)
..+.|+|||+.++.|++... ..|+||||+||+|||+++++++......
T Consensus 150 ~~~~LrpyQ~eav~~~l~~~-----~~~~LLad~tGlGKTi~Ai~~i~~l~~~--------------------------- 197 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRRH-----APRVLLADEVGLGKTIEAGMILHQQLLS--------------------------- 197 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHSS-----SCEEEECCCTTSCHHHHHHHHHHHHHHT---------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHHHHHHH---------------------------
T ss_conf 89997099999999999705-----8988987899975999999999999981---------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC----CC
Q ss_conf 67533223698889999877665533336889999739996824599999999976999998089999689988----89
Q 002565 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRT----KD 426 (907)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~----~~ 426 (907)
+..+++|||||.+|+.||..|+.+++. +.+.+++|.... ..
T Consensus 198 -------------------------------g~~~rvLIVvP~sLl~Qw~~E~~~~f~----l~v~v~~~~~~~~~~~~~ 242 (968)
T 3dmq_A 198 -------------------------------GAAERVLIIVPETLQHQWLVEMLRRFN----LRFALFDDERYAEAQHDA 242 (968)
T ss_dssp -------------------------------SSCCCEEEECCTTTHHHHHHHHHHHSC----CCCEECCHHHHHHHHHTT
T ss_pred -------------------------------CCCCEEEEEECHHHHHHHHHHHHHHHC----CCEEEECCCHHHHHHHHC
T ss_conf -------------------------------899829999578889999999999869----987998062055543200
Q ss_pred CCCCCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00017984999140102012799999745676421155457750233444421001000124578888878876668888
Q 002565 427 PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGP 506 (907)
Q Consensus 427 ~~~l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~ 506 (907)
...+..++|||+||+++.+.... ...
T Consensus 243 ~~~~~~~dIvI~T~~~L~~~~~~------------------------------------------------------~~~ 268 (968)
T 3dmq_A 243 YNPFDTEQLVICSLDFARRSKQR------------------------------------------------------LEH 268 (968)
T ss_dssp CSSSTTCSEEEECHHHHHTSTTT------------------------------------------------------THH
T ss_pred CCCCCCCCEEEECHHHHHHCHHH------------------------------------------------------HHH
T ss_conf 36445689899768998648788------------------------------------------------------887
Q ss_pred CCCCCCCEEEECCCCCCCCCCHHH---HHHHHHH--HCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCC
Q ss_conf 632340399983576569931089---9999940--02814897266754641356656775336788756889967145
Q 002565 507 LAKVGWFRVVLDEAQTIKNHRTQV---ARACCSL--RAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKI 581 (907)
Q Consensus 507 L~~i~w~rVILDEAH~IKN~~s~~---skA~~~L--~a~~Rw~LTGTPiqN~l~DL~sll~FL~~~~~~~~~~F~~~~~~ 581 (907)
+....|++||+||||.+||..+.. ++++..| ++.++|+|||||++|++.|+|++++||.++.|+++..|...+..
T Consensus 269 l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~ 348 (968)
T 3dmq_A 269 LCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKN 348 (968)
T ss_dssp HHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHH
T ss_pred HHHCCCCEEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 64158778974446762588875429999999986257858999768766987999999982593011898999999985
Q ss_pred CCC---------------CC------------------------CHHHHHHHHHHHHH---------HHHHHCCCCCCCC
Q ss_conf 554---------------58------------------------55667999999999---------8756134642479
Q 002565 582 PIS---------------RN------------------------SLHGYKKLQAVLRA---------IMLRRTKGTFIDG 613 (907)
Q Consensus 582 pi~---------------~~------------------------~~~~~~~Lq~lL~~---------~mLRRtK~dv~~g 613 (907)
... .. ..........++.. +++|+++..+
T Consensus 349 ~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i--- 425 (968)
T 3dmq_A 349 YCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV--- 425 (968)
T ss_dssp HHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC---
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---
T ss_conf 78899999987426789988999999884203367887503622233379999999999986173326563226554---
Q ss_pred CCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 87447999707999917989999999999999999999998318763109999999999999628920324335553222
Q 002565 614 QPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGK 693 (907)
Q Consensus 614 ~pii~LP~k~~~vv~v~lS~eEr~lY~~l~~~~~~~~~~~~~~g~~~~~~~~iL~~L~rLRqic~HP~Lv~~~~~~~~~~ 693 (907)
..+|++....+.+++++.++..|+.... ......... ....+.+|..+...
T Consensus 426 ---~~~p~r~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~----------~~~~~l~pe~~~~~------- 476 (968)
T 3dmq_A 426 ---KGFPKRELHTIKLPLPTQYQTAIKVSGI---------MGARKSAED----------RARDMLYPERIYQE------- 476 (968)
T ss_dssp ---CCCCCCCCCEEEECCCHHHHHHHHHHHH---------TTCCSSGGG----------GTHHHHCSGGGTTT-------
T ss_pred ---CCCCHHHEEEEECCCCHHHHHHHHHHHH---------HHHHHHHHH----------HHHHHCCHHHHHHH-------
T ss_conf ---5567111575236899999999998754---------302126677----------77641085989987-------
Q ss_pred CHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21898611994689999974101453234468999995123467523311121102599998998643364575520110
Q 002565 694 ISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSK 773 (907)
Q Consensus 694 ~~~e~~k~l~~e~~~~ll~~le~~~~~C~iC~d~~e~pvit~C~H~fC~~Ci~~~~~~~~~~CP~~~C~~~l~~~~~~~~ 773 (907)
+..
T Consensus 477 -------------------------------------------------------l~~---------------------- 479 (968)
T 3dmq_A 477 -------------------------------------------------------FEG---------------------- 479 (968)
T ss_dssp -------------------------------------------------------TTS----------------------
T ss_pred -------------------------------------------------------HHH----------------------
T ss_conf -------------------------------------------------------643----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12234568899999999954566787678766446999999999753105876412220124888987545789988996
Q 002565 774 TTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPI 853 (907)
Q Consensus 774 ~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~SsKi~aLlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (907)
........+.|+.++.+++.. .. ..
T Consensus 480 ------------------------~~~~~~~~~~K~~~L~~ll~~--~~-----------------------------~~ 504 (968)
T 3dmq_A 480 ------------------------DNATWWNFDPRVEWLMGYLTS--HR-----------------------------SQ 504 (968)
T ss_dssp ------------------------SSCCTTTTSHHHHHHHHHHHH--TS-----------------------------SS
T ss_pred ------------------------HHHCCCCCCHHHHHHHHHHHH--CC-----------------------------CC
T ss_conf ------------------------331356856799999999983--79-----------------------------99
Q ss_pred EEEEEECCHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHCCCC-CCCCC
Q ss_conf 299991433339999999975-8981999972699899999999722899-96359
Q 002565 854 KSIVFSQWTRMLDLVENSLNQ-HCIQYRRLDGTMSLPARDRAVKDFNTDR-EVCSL 907 (907)
Q Consensus 854 KVIVFSQft~~LdiLe~~L~~-~gi~~~rldGsms~~~R~~~I~~F~~dp-~v~VL 907 (907)
|+||||++..+++.|...|.. .|+.+..++|+|+..+|+.+++.|+++. .++||
T Consensus 505 k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vL 560 (968)
T 3dmq_A 505 KVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVL 560 (968)
T ss_dssp CCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEE
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEE
T ss_conf 78999695999999999999874983899849999999999999974799763089
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=256.12 Aligned_cols=395 Identities=15% Similarity=0.158 Sum_probs=221.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46672679999999998210366666851231788845899999999731002331022203421112568988888886
Q 002565 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (907)
Q Consensus 272 ~~~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (907)
..+|++||+.++.|++.. ++||+++||+|||+++++++.....
T Consensus 7 ~~~l~~~Q~~~i~~~~~~--------~~ll~~~tG~GKT~~~~~~~~~~~~----------------------------- 49 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET--------NCLIVLPTGLGKTLIAMMIAEYRLT----------------------------- 49 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS--------CEEEECCTTSCHHHHHHHHHHHHHH-----------------------------
T ss_pred CCCCCHHHHHHHHHHHHC--------CEEEECCCCCCHHHHHHHHHHHHHH-----------------------------
T ss_conf 878639999999999619--------9899918998789999999999986-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH-HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC-CC
Q ss_conf 753322369888999987766553333688999973999682-4599999999976999998089999689988890-00
Q 002565 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VE 429 (907)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~-~~ 429 (907)
.+.+++|||||. +|+.||.+|+.+++... ..++.+++|....... ..
T Consensus 50 ------------------------------~~~~~~liv~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~ 98 (494)
T 1wp9_A 50 ------------------------------KYGGKVLMLAPTKPLVLQHAESFRRLFNLP-PEKIVALTGEKSPEERSKA 98 (494)
T ss_dssp ------------------------------HSCSCEEEECSSHHHHHHHHHHHHHHBCSC-GGGEEEECSCSCHHHHHHH
T ss_pred ------------------------------CCCCEEEEEECCHHHHHHHHHHHHHHHCCC-HHHEEEEECCCCHHHHHHH
T ss_conf ------------------------------479859999788899999999999874756-1116876077533556653
Q ss_pred CCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 17984999140102012799999745676421155457750233444421001000124578888878876668888632
Q 002565 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (907)
Q Consensus 430 l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~ 509 (907)
+..++|+|+||+.+...... ..+..
T Consensus 99 ~~~~~ivv~T~~~l~~~~~~-------------------------------------------------------~~~~~ 123 (494)
T 1wp9_A 99 WARAKVIVATPQTIENDLLA-------------------------------------------------------GRISL 123 (494)
T ss_dssp HHHCSEEEECHHHHHHHHHT-------------------------------------------------------TSCCT
T ss_pred CCCCCEEEECHHHHHHHHHC-------------------------------------------------------CCCCH
T ss_conf 35798999639999999860-------------------------------------------------------87156
Q ss_pred CCCCEEEECCCCCCCCCCHHHHHH--HH-HHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHH---HHHHCCCC
Q ss_conf 340399983576569931089999--99-4002814897266754641356656775336788756889---96714555
Q 002565 510 VGWFRVVLDEAQTIKNHRTQVARA--CC-SLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSF---YSTIKIPI 583 (907)
Q Consensus 510 i~w~rVILDEAH~IKN~~s~~skA--~~-~L~a~~Rw~LTGTPiqN~l~DL~sll~FL~~~~~~~~~~F---~~~~~~pi 583 (907)
..|.+||+||||.+++........ +. .....++|+|||||. |+..+++.++.++..........+ ...+..+.
T Consensus 124 ~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 202 (494)
T 1wp9_A 124 EDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGI 202 (494)
T ss_dssp TSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCC
T ss_pred HHCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHHEEECCCCCCHHHHHHCCCC
T ss_conf 54108999787566888819999999973288776999956998-88578999998507000502678758788752787
Q ss_pred -----CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf -----458556679999999998756134642479874479997079999179899999999999999999999983187
Q 002565 584 -----SRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGT 658 (907)
Q Consensus 584 -----~~~~~~~~~~Lq~lL~~~mLRRtK~dv~~g~pii~LP~k~~~vv~v~lS~eEr~lY~~l~~~~~~~~~~~~~~g~ 658 (907)
..........+...+..++.+|.+.....| .+++.. ..++..+.. .+... +......+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~~---~~~~~----~~~~~~~~~ 266 (494)
T 1wp9_A 203 RFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETG----LLESSS-----PDIPKKEVL---RAGQI----INEEMAKGN 266 (494)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHT----SSSCCC-----TTSCHHHHH---HHHHH----HHHHHTTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCC-----CCCCHHHHH---HHHHH----HHHHHHCCC
T ss_conf 42689568858899999989899999999999735----565457-----773355789---99999----998753356
Q ss_pred -CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -6310999999999999962892032433555322221898611994689999974101453234468999995123467
Q 002565 659 -VNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCG 737 (907)
Q Consensus 659 -~~~~~~~iL~~L~rLRqic~HP~Lv~~~~~~~~~~~~~e~~k~l~~e~~~~ll~~le~~~~~C~iC~d~~e~pvit~C~ 737 (907)
..-.....+..+..++....... . .........+..+... |...... ...
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~---~----------------~~~~~~~~~~~~l~~~------~~~~~~~----~~~ 317 (494)
T 1wp9_A 267 HDLRGLLLYHAMALKLHHAIELLE---T----------------QGLSALRAYIKKLYEE------AKAGSTK----ASK 317 (494)
T ss_dssp CSTTTHHHHHHHHHHHHHHHHHHH---H----------------TCHHHHHHHHHHHHHH------HHTTCCH----HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH---H----------------HCHHHHHHHHHHHHHH------HCCCCCH----HHH
T ss_conf 311347999988888999999998---5----------------2579999999999875------2232114----556
Q ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 52331112110259999899864336457552011012234568899999999954566787678766446999999999
Q 002565 738 HVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILH 817 (907)
Q Consensus 738 H~fC~~Ci~~~~~~~~~~CP~~~C~~~l~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~SsKi~aLlelL~ 817 (907)
-.++..-+...+. .|.. .......++|+..+.++|.
T Consensus 318 ~~~~~~~~~~~~~---------~~~~-----------------------------------~~~~~~~~~k~~~l~~~l~ 353 (494)
T 1wp9_A 318 EIFSDKRMKKAIS---------LLVQ-----------------------------------AKEIGLDHPKMDKLKEIIR 353 (494)
T ss_dssp HHHTSHHHHHHHH---------HHHH-----------------------------------HHHHTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------HHHH-----------------------------------HHHCCCCCHHHHHHHHHHH
T ss_conf 6665078898999---------9998-----------------------------------8745899869999999999
Q ss_pred HHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEC--------CCCHH
Q ss_conf 7531058764122201248889875457899889962999914333399999999758981999972--------69989
Q 002565 818 TQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG--------TMSLP 889 (907)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVIVFSQft~~LdiLe~~L~~~gi~~~rldG--------sms~~ 889 (907)
.+..... ..|+|||+++..+++.+...|...|+.+.+++| +|+..
T Consensus 354 ~~~~~~~---------------------------~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~ 406 (494)
T 1wp9_A 354 EQLQRKQ---------------------------NSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQR 406 (494)
T ss_dssp HHHHHCT---------------------------TCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CC
T ss_pred HHHCCCC---------------------------CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHH
T ss_conf 9843689---------------------------9759999766899999999999759980799656654444458999
Q ss_pred HHHHHHHHHCCCCCCCCC
Q ss_conf 999999972289996359
Q 002565 890 ARDRAVKDFNTDREVCSL 907 (907)
Q Consensus 890 ~R~~~I~~F~~dp~v~VL 907 (907)
+|+.+++.|+++. ++||
T Consensus 407 ~r~~~~~~F~~~~-~~vL 423 (494)
T 1wp9_A 407 EQKLILDEFARGE-FNVL 423 (494)
T ss_dssp HHHHHHHHHHHTS-CSEE
T ss_pred HHHHHHHHHHCCC-CEEE
T ss_conf 9999999986699-4699
No 6
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=224.72 Aligned_cols=173 Identities=13% Similarity=0.096 Sum_probs=120.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46672679999999998210366666851231788845899999999731002331022203421112568988888886
Q 002565 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (907)
Q Consensus 272 ~~~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (907)
...|++||..++.|++.. ..+|++++||+|||++++..+......
T Consensus 246 ~~~~r~~Q~~ai~~il~g-------~~~ll~a~TGsGKTl~~~~~i~~~l~~---------------------------- 290 (936)
T 4a2w_A 246 TKKARSYQIELAQPAING-------KNALICAPTGSGKTFVSILICEHHFQN---------------------------- 290 (936)
T ss_dssp --CCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHTTTTT----------------------------
T ss_pred CCCCCHHHHHHHHHHHCC-------CCEEEEECCCCHHHHHHHHHHHHHHHH----------------------------
T ss_conf 898779999999999809-------989999699845999999999999973----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH-HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC--CC
Q ss_conf 753322369888999987766553333688999973999682-459999999997699999808999968998889--00
Q 002565 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKD--PV 428 (907)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~--~~ 428 (907)
......+++|||||. .|+.||.+++.++++.. .+++.+++|+..... ..
T Consensus 291 ---------------------------~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~G~~~~~~~~~~ 342 (936)
T 4a2w_A 291 ---------------------------MPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEK 342 (936)
T ss_dssp ---------------------------CCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT-TCCEEEECCC-----CCHH
T ss_pred ---------------------------CCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHH
T ss_conf ---------------------------655689859999698999999999999971216-9559999799631257897
Q ss_pred CCCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 0179849991401020127999997456764211554577502334444210010001245788888788766688886-
Q 002565 429 ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPL- 507 (907)
Q Consensus 429 ~l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L- 507 (907)
....++|+|+|++.+...+.. ..+
T Consensus 343 ~~~~~~IvI~Tp~~L~~~l~~-------------------------------------------------------~~~~ 367 (936)
T 4a2w_A 343 VIEDSDIIVVTPQILVNSFED-------------------------------------------------------GTLT 367 (936)
T ss_dssp HHHHCSEEEECHHHHHHHHHS-------------------------------------------------------SSCC
T ss_pred HCCCCCEEEECHHHHHHHHHC-------------------------------------------------------CCCC
T ss_conf 416999999449999999871-------------------------------------------------------7645
Q ss_pred CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHC--------CCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 32340399983576569931089999994002--------81489726675464135665677
Q 002565 508 AKVGWFRVVLDEAQTIKNHRTQVARACCSLRA--------KRRWCLSGTPIQNSIDDLYSYFR 562 (907)
Q Consensus 508 ~~i~w~rVILDEAH~IKN~~s~~skA~~~L~a--------~~Rw~LTGTPiqN~l~DL~sll~ 562 (907)
..-.|..||+||||.+.+...........+.. .++++|||||.+++..+++..+.
T Consensus 368 ~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~ 430 (936)
T 4a2w_A 368 SLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIE 430 (936)
T ss_dssp CGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHH
T ss_conf 336787999987313599866999999999986313788673998638855454020899999
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=218.01 Aligned_cols=307 Identities=19% Similarity=0.155 Sum_probs=196.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 44667267999999999821036666685123178884589999999973100233102220342111256898888888
Q 002565 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (907)
Q Consensus 271 l~~~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (907)
....|++||..++.+++.. ..+||+++||+|||++++.++...
T Consensus 90 ~~~~l~~~Q~~ai~~i~~~-------~~~ll~~~TGsGKT~~~l~~i~~~------------------------------ 132 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLVD-------KRGCIVLPTGSGKTHVAMAAINEL------------------------------ 132 (472)
T ss_dssp CCCCBCHHHHHHHHHHTTT-------TEEEEECCTTSCHHHHHHHHHHHH------------------------------
T ss_pred CCCCCCHHHHHHHHHHHHC-------CCEEEEECCCCCHHHHHHHHHHHC------------------------------
T ss_conf 8998688999999999965-------987999699998899999999980------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH-HHHHHHHHHHHHHCCCCCCEE-EEEEECCCCCCCCC
Q ss_conf 6753322369888999987766553333688999973999682-459999999997699999808-99996899888900
Q 002565 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALS-VLIYHGGSRTKDPV 428 (907)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sll~qW~~Ei~k~~~~~~~l~-Vlvy~G~~r~~~~~ 428 (907)
..++|||||. +|+.||.+++.++ + +. +.+++|....
T Consensus 133 ---------------------------------~~~~Lvl~P~~~L~~Q~~~~~~~~-~----~~~v~~~~g~~~~---- 170 (472)
T 2fwr_A 133 ---------------------------------STPTLIVVPTLALAEQWKERLGIF-G----EEYVGEFSGRIKE---- 170 (472)
T ss_dssp ---------------------------------CSCEEEEESSHHHHHHHHHHGGGG-C----GGGEEEBSSSCBC----
T ss_pred ---------------------------------CCCEEEEECCHHHHHHHHHHHHHC-C----CCCEEEECCCCCC----
T ss_conf ---------------------------------999999987999999999999967-9----9636998787677----
Q ss_pred CCCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01798499914010201279999974567642115545775023344442100100012457888887887666888863
Q 002565 429 ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLA 508 (907)
Q Consensus 429 ~l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~ 508 (907)
..+|+|+||+.+..... ..
T Consensus 171 ---~~~Ivv~T~~~l~~~~~----------------------------------------------------------~~ 189 (472)
T 2fwr_A 171 ---LKPLTVSTYDSAYVNAE----------------------------------------------------------KL 189 (472)
T ss_dssp ---CCSEEEEEHHHHHHTHH----------------------------------------------------------HH
T ss_pred ---CCCEEEEECHHHHHHHH----------------------------------------------------------HH
T ss_conf ---67789997689997799----------------------------------------------------------73
Q ss_pred CCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCH
Q ss_conf 23403999835765699310899999940028148972667546413566567753367887568899671455545855
Q 002565 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSL 588 (907)
Q Consensus 509 ~i~w~rVILDEAH~IKN~~s~~skA~~~L~a~~Rw~LTGTPiqN~l~DL~sll~FL~~~~~~~~~~F~~~~~~pi~~~~~ 588 (907)
.-.|..||+||+|.+.+.... +.+..+.+.++++|||||..+.-.+.
T Consensus 190 ~~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~~------------------------------- 236 (472)
T 2fwr_A 190 GNRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLGLTATFEREDGRHE------------------------------- 236 (472)
T ss_dssp TTTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGGG-------------------------------
T ss_pred CCCCCEEEEECCCCCCCHHHH--HHHHHCCCCEEEEEECCCCCCCCHHH-------------------------------
T ss_conf 687778999897578976899--99973577818999327668897789-------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 66799999999987561346424798744799970799991798999999999999999999999831876310999999
Q 002565 589 HGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILL 668 (907)
Q Consensus 589 ~~~~~Lq~lL~~~mLRRtK~dv~~g~pii~LP~k~~~vv~v~lS~eEr~lY~~l~~~~~~~~~~~~~~g~~~~~~~~iL~ 668 (907)
.|..++.+.+.++...++..+ .+++.....+.+++++.++..|+.+....... ....
T Consensus 237 ----~l~~~~~~~~~~~~~~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~----------- 293 (472)
T 2fwr_A 237 ----ILKEVVGGKVFELFPDSLAGK----HLAKYTIKRIFVPLAEDERVEYEKREKVYKQF----LRAR----------- 293 (472)
T ss_dssp ----SHHHHTCCEEEECCHHHHTSC----CCCSEEECCEEECCCHHHHHHTTTTTHHHHSC----SSSC-----------
T ss_pred ----HHHHHHCCEEEECCHHHHHCC----CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHH----HHHC-----------
T ss_conf ----999972985765478987067----67881899998589989999999999999999----9864-----------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99999996289203243355532222189861199468999997410145323446899999512346752331112110
Q 002565 669 MLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEY 748 (907)
Q Consensus 669 ~L~rLRqic~HP~Lv~~~~~~~~~~~~~e~~k~l~~e~~~~ll~~le~~~~~C~iC~d~~e~pvit~C~H~fC~~Ci~~~ 748 (907)
.+......+ ... ...|.
T Consensus 294 ------------~~~~~~~~~-~~~------------------------~~~~~-------------------------- 310 (472)
T 2fwr_A 294 ------------GITLRRAED-FNK------------------------IVMAS-------------------------- 310 (472)
T ss_dssp ------------CCTTTCCSS-STT------------------------TTTTT--------------------------
T ss_pred ------------CCCCCCHHH-HHH------------------------HHHHH--------------------------
T ss_conf ------------754224466-899------------------------99872--------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 25999989986433645755201101223456889999999995456678767876644699999999975310587641
Q 002565 749 ITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSI 828 (907)
Q Consensus 749 ~~~~~~~CP~~~C~~~l~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~SsKi~aLlelL~~~~~~~~~~~~ 828 (907)
..++ .++..+..... . .......+.|+..+.+++.. ..+
T Consensus 311 -----~~~~--~~~~~~~~~~~-----~----------------------~~~~~~~~~k~~~l~~~l~~--~~~----- 349 (472)
T 2fwr_A 311 -----GYDE--RAYEALRAWEE-----A----------------------RRIAFNSKNKIRKLREILER--HRK----- 349 (472)
T ss_dssp -----CCSS--SSSTTTHHHHH-----H----------------------HHHHHSCSHHHHHHHHHHHH--TSS-----
T ss_pred -----CCCH--HHHHHHHHHHH-----H----------------------HHHHHCCHHHHHHHHHHHHH--CCC-----
T ss_conf -----3698--89999999999-----9----------------------99763373899999999985--789-----
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 2220124888987545789988996299991433339999999975898199997269989999999972289996359
Q 002565 829 VEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREVCSL 907 (907)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~KVIVFSQft~~LdiLe~~L~~~gi~~~rldGsms~~~R~~~I~~F~~dp~v~VL 907 (907)
.|+|||+++..+++.+...|. +..++|.|+..+|+.+++.|++ .+++||
T Consensus 350 ------------------------~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~-g~~~vL 398 (472)
T 2fwr_A 350 ------------------------DKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRT-GRFRAI 398 (472)
T ss_dssp ------------------------SCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHH-SSCSBC
T ss_pred ------------------------CCEEEEECCHHHHHHHHHHHC-----CCEEECCCCHHHHHHHHHHHHC-CCCCEE
T ss_conf ------------------------838999797999999999748-----6556289999999999999867-998889
No 8
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=217.82 Aligned_cols=172 Identities=13% Similarity=0.098 Sum_probs=119.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46672679999999998210366666851231788845899999999731002331022203421112568988888886
Q 002565 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (907)
Q Consensus 272 ~~~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (907)
...|++||..++.+++.. +.+|+++++|+|||++++..+.......
T Consensus 246 ~~~l~~~Q~~~i~~~l~~-------~~~ll~~~TGsGKTl~~~~~i~~~l~~~--------------------------- 291 (797)
T 4a2q_A 246 TKKARSYQIELAQPAING-------KNALICAPTGSGKTFVSILICEHHFQNM--------------------------- 291 (797)
T ss_dssp --CCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHHHHHTC---------------------------
T ss_pred CCCCCHHHHHHHHHHHHC-------CCEEEEECCCCHHHHHHHHHHHHHHHHC---------------------------
T ss_conf 899999999999999809-------9989996999729999999999999846---------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH-HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC--C
Q ss_conf 753322369888999987766553333688999973999682-4599999999976999998089999689988890--0
Q 002565 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP--V 428 (907)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~--~ 428 (907)
.....+++|||||. .|+.||.+++.++++.. .+++..++|+...... .
T Consensus 292 ----------------------------~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~ 342 (797)
T 4a2q_A 292 ----------------------------PAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEK 342 (797)
T ss_dssp ----------------------------CSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECCC-----CHHH
T ss_pred ----------------------------CCCCCCEEEEEECCHHHHHHHHHHHHHHCCCC-CCEEEEEECCCCHHHHHHH
T ss_conf ----------------------------65679969999698999999999999861437-9469999699623246997
Q ss_pred CCCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 0179849991401020127999997456764211554577502334444210010001245788888788766688886-
Q 002565 429 ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPL- 507 (907)
Q Consensus 429 ~l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L- 507 (907)
....++|+|+|++.+...+.. ..+
T Consensus 343 ~~~~~~Ivv~Tp~~l~~~l~~-------------------------------------------------------~~~~ 367 (797)
T 4a2q_A 343 VIEDSDIIVVTPQILVNSFED-------------------------------------------------------GTLT 367 (797)
T ss_dssp HHHTCSEEEECHHHHHHHHHS-------------------------------------------------------SSCC
T ss_pred HHCCCCEEEECHHHHHHHHHH-------------------------------------------------------CCCC
T ss_conf 407999999766999999982-------------------------------------------------------6546
Q ss_pred CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHC--------CCEEEEECCCCCCCHHHHHHHH
Q ss_conf 32340399983576569931089999994002--------8148972667546413566567
Q 002565 508 AKVGWFRVVLDEAQTIKNHRTQVARACCSLRA--------KRRWCLSGTPIQNSIDDLYSYF 561 (907)
Q Consensus 508 ~~i~w~rVILDEAH~IKN~~s~~skA~~~L~a--------~~Rw~LTGTPiqN~l~DL~sll 561 (907)
..-.|..||+||||.+.+...........+.. .++++|||||.+++..+++..+
T Consensus 368 ~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~ 429 (797)
T 4a2q_A 368 SLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETI 429 (797)
T ss_dssp CGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHH
T ss_pred CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHH
T ss_conf 51337789998863558876499999999997631478878599972775545522489999
No 9
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=212.23 Aligned_cols=169 Identities=13% Similarity=0.099 Sum_probs=117.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46672679999999998210366666851231788845899999999731002331022203421112568988888886
Q 002565 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (907)
Q Consensus 272 ~~~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (907)
..+|++||..++.+++.. ..+|+++++|.|||++++..+.......
T Consensus 5 ~~~~~~~Q~~~i~~~~~~-------~~~l~~~~tGsGKT~~~~~~~~~~~~~~--------------------------- 50 (556)
T 4a2p_A 5 TKKARSYQIELAQPAING-------KNALICAPTGSGKTFVSILICEHHFQNM--------------------------- 50 (556)
T ss_dssp ---CCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHHHHHTC---------------------------
T ss_pred CCCCCHHHHHHHHHHHCC-------CCEEEECCCCCHHHHHHHHHHHHHHHHC---------------------------
T ss_conf 778779999999999749-------9899981999718999999999999837---------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH-HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC--C
Q ss_conf 753322369888999987766553333688999973999682-4599999999976999998089999689988890--0
Q 002565 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP--V 428 (907)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~--~ 428 (907)
.......+|||||. .|+.||.+++.++++.. .+++..++|....... .
T Consensus 51 ----------------------------~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~ 101 (556)
T 4a2p_A 51 ----------------------------PAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEK 101 (556)
T ss_dssp ----------------------------CSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEECCCC-----CHHH
T ss_pred ----------------------------CCCCCCEEEEEECCHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCHHHHH
T ss_conf ----------------------------45679869999288999999999999872406-9459998289874222898
Q ss_pred CCCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 0179849991401020127999997456764211554577502334444210010001245788888788766688886-
Q 002565 429 ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPL- 507 (907)
Q Consensus 429 ~l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L- 507 (907)
....++|+|+|++.+...+.. ..+
T Consensus 102 ~~~~~~i~v~T~~~l~~~~~~-------------------------------------------------------~~~~ 126 (556)
T 4a2p_A 102 VIEDSDIIVVTPQILVNSFED-------------------------------------------------------GTLT 126 (556)
T ss_dssp HHHHCSEEEECHHHHHHHHHS-------------------------------------------------------SSCC
T ss_pred HHCCCCEEEECHHHHHHHHHH-------------------------------------------------------CCCC
T ss_conf 617999999889999999983-------------------------------------------------------7502
Q ss_pred CCCCCCEEEECCCCCCCCCCHHHHHHHHHHH--------CCCEEEEECCCCCCCHHHHH
Q ss_conf 3234039998357656993108999999400--------28148972667546413566
Q 002565 508 AKVGWFRVVLDEAQTIKNHRTQVARACCSLR--------AKRRWCLSGTPIQNSIDDLY 558 (907)
Q Consensus 508 ~~i~w~rVILDEAH~IKN~~s~~skA~~~L~--------a~~Rw~LTGTPiqN~l~DL~ 558 (907)
.--.|..||+||||.+.+...........+. ..++++|||||.+++..++.
T Consensus 127 ~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~ 185 (556)
T 4a2p_A 127 SLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIE 185 (556)
T ss_dssp CSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHH
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHH
T ss_conf 50307799998875358864599999999985301368887699994785667516699
No 10
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=1.00 E-value=1 Score=210.83 Aligned_cols=171 Identities=11% Similarity=0.062 Sum_probs=119.6
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66726799999999982103666668512317888458999999997310023310222034211125689888888867
Q 002565 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (907)
Q Consensus 273 ~~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (907)
.+|++||..++.+++.. ..+|+++++|+|||++++..+.......
T Consensus 3 ~~~~~~Q~~~i~~~~~~-------~~~l~~~~tGsGKT~~~~~~~~~~~~~~---------------------------- 47 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKG-------KNTIICAPTGCGKTFVSLLICEHHLKKF---------------------------- 47 (555)
T ss_dssp CCCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHHHHHTC----------------------------
T ss_pred CCCCHHHHHHHHHHHCC-------CCEEEEECCCCHHHHHHHHHHHHHHHHC----------------------------
T ss_conf 88769999999999679-------9889995999839999999999999846----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH-HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC--CC
Q ss_conf 53322369888999987766553333688999973999682-4599999999976999998089999689988890--00
Q 002565 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP--VE 429 (907)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~--~~ 429 (907)
.......+|||||. .|+.||.+++.++++.. .+++..++|....... ..
T Consensus 48 ---------------------------~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~ 99 (555)
T 3tbk_A 48 ---------------------------PCGQKGKVVFFANQIPVYEQQATVFSRYFERL-GYNIASISGATSDSVSVQHI 99 (555)
T ss_dssp ---------------------------CSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT-TCCEEEECTTTGGGSCHHHH
T ss_pred ---------------------------CCCCCCEEEEEECCHHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHH
T ss_conf ---------------------------66789879999688899999999999870538-94799975997401228987
Q ss_pred CCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-C
Q ss_conf 179849991401020127999997456764211554577502334444210010001245788888788766688886-3
Q 002565 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPL-A 508 (907)
Q Consensus 430 l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L-~ 508 (907)
....+|+|+|++.+...+.. ..+ .
T Consensus 100 ~~~~~i~v~T~~~l~~~~~~-------------------------------------------------------~~~~~ 124 (555)
T 3tbk_A 100 IEDNDIIILTPQILVNNLNN-------------------------------------------------------GAIPS 124 (555)
T ss_dssp HHHCSEEEECHHHHHHHHHT-------------------------------------------------------SSSCC
T ss_pred HCCCCEEEECHHHHHHHHHC-------------------------------------------------------CCCCC
T ss_conf 36999999789999999860-------------------------------------------------------76344
Q ss_pred CCCCCEEEECCCCCCCCCCHHHHHHHHHHHC---------CCEEEEECCCCCCCHHHHHHHH
Q ss_conf 2340399983576569931089999994002---------8148972667546413566567
Q 002565 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRA---------KRRWCLSGTPIQNSIDDLYSYF 561 (907)
Q Consensus 509 ~i~w~rVILDEAH~IKN~~s~~skA~~~L~a---------~~Rw~LTGTPiqN~l~DL~sll 561 (907)
--.|..||+||||.+.+...........+.. .++++|||||.+++..++..++
T Consensus 125 ~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~ 186 (555)
T 3tbk_A 125 LSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAM 186 (555)
T ss_dssp GGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHH
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHH
T ss_conf 01077899977545687334999999999754112468887399992676667652299999
Done!