Query 002565
Match_columns 907
No_of_seqs 315 out of 2345
Neff 6.8
Searched_HMMs 13730
Date Tue Mar 26 17:18:46 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002565.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1281-1285//hhsearch_scop/002565hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1z3ix2 c.37.1.19 (X:92-389) R 100.0 0 0 357.8 14.2 228 265-605 47-298 (298)
2 d1z63a1 c.37.1.19 (A:432-661) 100.0 0 0 353.6 17.2 226 264-620 3-230 (230)
3 d1z3ix1 c.37.1.19 (X:390-735) 99.9 2.1E-23 1.5E-27 166.7 14.4 165 618-906 8-173 (346)
4 d1z5za1 c.37.1.19 (A:663-906) 99.9 2.9E-22 2.1E-26 159.3 13.8 140 622-907 1-141 (244)
5 d2fz4a1 c.37.1.19 (A:24-229) D 99.8 8.7E-21 6.4E-25 149.7 12.4 138 271-549 67-205 (206)
6 d1rifa_ c.37.1.23 (A:) DNA hel 99.8 3E-20 2.2E-24 146.2 13.3 167 271-566 110-278 (282)
7 d1wp9a1 c.37.1.19 (A:1-200) pu 99.7 1.6E-16 1.1E-20 122.0 9.8 170 273-566 8-182 (200)
8 d2p6ra3 c.37.1.19 (A:1-202) He 99.5 1.5E-13 1.1E-17 102.6 10.9 166 274-569 25-197 (202)
9 d1gkub1 c.37.1.16 (B:1-250) He 99.2 1.2E-10 8.7E-15 83.8 12.0 106 274-446 43-156 (237)
10 d1gm5a3 c.37.1.19 (A:286-549) 99.2 6.8E-11 5E-15 85.3 10.3 168 271-562 80-255 (264)
11 d1a1va1 c.37.1.14 (A:190-325) 99.1 2E-10 1.5E-14 82.2 9.9 123 297-549 9-136 (136)
12 d1yksa1 c.37.1.14 (A:185-324) 99.1 3.4E-10 2.5E-14 80.8 8.9 41 509-550 96-140 (140)
13 d1oywa2 c.37.1.19 (A:1-206) Re 99.0 2.6E-10 1.9E-14 81.5 5.0 164 273-566 24-201 (206)
14 d2eyqa3 c.37.1.19 (A:546-778) 99.0 1.8E-08 1.3E-12 69.6 14.3 160 271-555 52-219 (233)
15 d1hv8a1 c.37.1.19 (A:3-210) Pu 98.7 1.2E-07 8.8E-12 64.2 11.7 164 274-558 26-194 (208)
16 d1wrba1 c.37.1.19 (A:164-401) 98.6 1.6E-06 1.2E-10 56.9 13.5 175 273-559 42-226 (238)
17 d1qdea_ c.37.1.19 (A:) Initiat 98.5 3.8E-06 2.8E-10 54.5 14.6 165 273-558 31-200 (212)
18 d1jm7a_ g.44.1.1 (A:) brca1 RI 98.5 1.8E-07 1.3E-11 63.1 7.7 62 704-768 8-71 (103)
19 d1rmda2 g.44.1.1 (A:1-86) V(D) 98.5 1.9E-08 1.4E-12 69.4 2.3 50 718-769 23-72 (86)
20 d2g9na1 c.37.1.19 (A:21-238) I 98.5 4.3E-06 3.1E-10 54.1 14.2 164 274-558 34-204 (218)
21 d1fbva4 g.44.1.1 (A:356-434) C 98.5 7.4E-08 5.4E-12 65.6 4.8 58 710-769 15-72 (79)
22 d1t6na_ c.37.1.19 (A:) Spliceo 98.4 4.2E-06 3E-10 54.2 13.0 165 274-558 23-195 (207)
23 d2fwra1 c.37.1.19 (A:257-456) 98.4 1.8E-08 1.3E-12 69.7 0.4 66 805-907 77-142 (200)
24 d2bmfa2 c.37.1.14 (A:178-482) 98.4 3.5E-07 2.6E-11 61.2 6.9 102 385-552 39-144 (305)
25 d1veca_ c.37.1.19 (A:) DEAD bo 98.4 8.5E-06 6.2E-10 52.2 13.3 164 274-557 25-194 (206)
26 d1t5ia_ c.37.1.19 (A:) Spliceo 98.3 1.1E-06 8.3E-11 57.9 7.9 71 805-907 11-81 (168)
27 d1t1ha_ g.44.1.2 (A:) E3 ubiqu 98.3 1.2E-07 9.1E-12 64.1 2.6 53 717-771 7-59 (78)
28 d2c2la2 g.44.1.2 (A:225-304) S 98.2 1E-07 7.6E-12 64.6 1.1 51 717-769 6-56 (80)
29 d1q0ua_ c.37.1.19 (A:) Probabl 98.2 2.4E-05 1.7E-09 49.3 12.9 164 274-557 23-195 (209)
30 d2j0sa1 c.37.1.19 (A:22-243) P 98.2 1.1E-05 7.7E-10 51.6 10.9 163 274-557 39-207 (222)
31 d1wp9a2 c.37.1.19 (A:201-486) 98.2 2.3E-06 1.7E-10 55.9 6.6 75 805-907 141-223 (286)
32 d1s2ma1 c.37.1.19 (A:46-251) P 98.2 2E-05 1.4E-09 49.8 11.4 164 274-558 23-192 (206)
33 d1jm7b_ g.44.1.1 (B:) bard1 RI 98.1 2.8E-06 2E-10 55.4 6.5 46 718-768 22-68 (97)
34 d1c4oa2 c.37.1.19 (A:410-583) 98.1 1.2E-05 8.6E-10 51.3 8.7 54 853-907 32-85 (174)
35 d1s2ma2 c.37.1.19 (A:252-422) 98.0 8E-06 5.8E-10 52.4 7.6 71 805-907 16-86 (171)
36 d1fuka_ c.37.1.19 (A:) Initiat 98.0 1.3E-05 9.2E-10 51.1 8.4 71 805-907 11-81 (162)
37 d2rb4a1 c.37.1.19 (A:307-474) 98.0 8.9E-06 6.5E-10 52.1 7.1 71 805-907 16-86 (168)
38 d1t5la2 c.37.1.19 (A:415-595) 97.9 2.5E-05 1.8E-09 49.2 8.0 72 806-907 14-85 (181)
39 d1hv8a2 c.37.1.19 (A:211-365) 97.9 1.8E-05 1.3E-09 50.1 7.1 70 805-907 13-82 (155)
40 d2baya1 g.44.1.2 (A:1-56) Pre- 97.8 2.2E-06 1.6E-10 56.1 1.1 49 720-771 2-51 (56)
41 d1oywa3 c.37.1.19 (A:207-406) 97.8 5.7E-05 4.1E-09 46.8 8.1 32 386-422 32-64 (200)
42 d2j0sa2 c.37.1.19 (A:244-411) 97.8 3.7E-05 2.7E-09 48.0 7.0 69 806-906 19-87 (168)
43 d1g25a_ g.44.1.1 (A:) TFIIH Ma 97.8 7.1E-06 5.2E-10 52.7 3.3 50 718-769 3-57 (65)
44 d1chca_ g.44.1.1 (A:) Immediat 97.8 4.8E-06 3.5E-10 53.8 2.4 49 716-767 3-52 (68)
45 d1wgma_ g.44.1.2 (A:) Ubiquiti 97.7 5.8E-06 4.2E-10 53.3 2.0 52 717-771 21-73 (98)
46 d1bora_ g.44.1.1 (A:) Acute pr 97.7 1.2E-05 8.9E-10 51.2 3.2 45 718-768 6-50 (56)
47 d1ur6b_ g.44.1.1 (B:) Not-4 N- 97.6 1.7E-05 1.3E-09 50.2 2.9 48 719-768 1-52 (52)
48 d1v87a_ g.44.1.1 (A:) Deltex p 97.4 1.8E-05 1.3E-09 50.1 1.5 50 717-768 24-95 (114)
49 d1iyma_ g.44.1.1 (A:) EL5 RING 97.4 5.8E-05 4.3E-09 46.8 3.9 46 717-765 4-53 (55)
50 d1w36d1 c.37.1.19 (D:2-360) Ex 97.1 0.0036 2.6E-07 35.1 10.2 45 509-555 259-303 (359)
51 d1wima_ g.44.1.1 (A:) UbcM4-in 96.8 0.0002 1.5E-08 43.3 1.5 49 716-764 3-61 (94)
52 d3dplr1 g.44.1.1 (R:19-106) RI 96.6 0.00054 4E-08 40.5 2.9 47 717-766 20-84 (88)
53 d1tf5a3 c.37.1.19 (A:1-226,A:3 96.0 0.016 1.2E-06 30.9 7.8 103 271-446 77-183 (273)
54 d1vyxa_ g.44.1.3 (A:) IE1B pro 95.4 0.0026 1.9E-07 36.1 1.7 49 716-766 4-58 (60)
55 d1gkub2 c.37.1.16 (B:251-498) 95.3 0.00042 3.1E-08 41.2 -2.7 52 385-446 26-86 (248)
56 d1nkta3 c.37.1.19 (A:-15-225,A 94.4 0.056 4.1E-06 27.4 6.2 102 272-446 95-200 (288)
57 d1a1va2 c.37.1.14 (A:326-624) 93.7 0.015 1.1E-06 31.1 2.2 35 384-423 36-71 (299)
58 d2eyqa5 c.37.1.19 (A:779-989) 92.6 0.21 1.6E-05 23.6 6.8 53 385-440 32-91 (211)
59 d1gm5a4 c.37.1.19 (A:550-755) 89.8 0.03 2.2E-06 29.2 0.1 51 386-440 31-98 (206)
60 d1jr6a_ c.37.1.14 (A:) HCV hel 87.6 0.15 1.1E-05 24.7 2.4 56 384-445 35-90 (138)
61 d1tf5a4 c.37.1.19 (A:396-570) 82.1 1 7.4E-05 19.2 6.2 21 385-405 35-55 (175)
62 d1sxje2 c.37.1.20 (E:4-255) Re 82.0 0.61 4.4E-05 20.6 3.5 51 510-560 130-181 (252)
63 d2cs3a1 g.44.1.3 (A:8-87) Prot 72.6 0.96 7E-05 19.4 2.2 42 717-758 7-56 (80)
64 d1yksa2 c.37.1.14 (A:325-623) 69.6 2.2 0.00016 17.0 4.7 52 384-440 36-90 (299)
65 d1a5ta2 c.37.1.20 (A:1-207) de 66.5 2.5 0.00018 16.6 5.1 48 274-321 2-49 (207)
66 d1t5la1 c.37.1.19 (A:2-414) Nu 66.3 2.5 0.00018 16.6 9.5 70 275-409 12-82 (413)
67 d1nkta4 c.37.1.19 (A:397-615) 53.4 4.2 0.00031 15.2 6.8 10 540-549 33-42 (219)
68 d1uaaa1 c.37.1.19 (A:2-307) DE 40.7 6.6 0.00048 13.9 6.9 38 274-320 1-38 (306)
69 d1c4oa1 c.37.1.19 (A:2-409) Nu 32.0 9 0.00066 13.0 9.4 74 277-418 11-85 (408)
70 d2i3ba1 c.37.1.11 (A:1-189) Ca 24.9 8.4 0.00061 13.2 0.3 42 507-548 101-142 (189)
71 d1ofha_ c.37.1.20 (A:) HslU {H 24.0 12 0.0009 12.1 1.6 39 278-319 34-72 (309)
72 d1xpja_ c.108.1.18 (A:) Hypoth 22.1 13 0.00098 11.9 4.5 47 809-884 26-85 (124)
No 1
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=100.00 E-value=0 Score=357.78 Aligned_cols=228 Identities=25% Similarity=0.350 Sum_probs=184.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHC--CCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCC
Q ss_conf 7898754466726799999999982103--66666851231788845899999999731002331022203421112568
Q 002565 265 TLPDGLLSVNLLKHQKIALAWMLQKETR--SLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNL 342 (907)
Q Consensus 265 ~~P~~~l~~~L~~hQk~gl~wml~~e~~--~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (907)
.+++. +...|+|||++||.||+.+... .....|||||||||||||+|+|+++........
T Consensus 47 ~~~p~-l~~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~----------------- 108 (298)
T d1z3ix2 47 VVDPV-LSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSP----------------- 108 (298)
T ss_dssp ECCHH-HHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCT-----------------
T ss_pred EECHH-HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC-----------------
T ss_conf 57844-301020999999999999877354126874698747878899999999999998460-----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf 98888888675332236988899998776655333368899997399968245999999999769999980899996899
Q 002565 343 DDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS 422 (907)
Q Consensus 343 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~ 422 (907)
......+++|||||++++.||.+||.+|++. ...++.++|..
T Consensus 109 ------------------------------------~~~~~~~~~LIV~P~sl~~qW~~Ei~k~~~~--~~~~v~~~~~~ 150 (298)
T d1z3ix2 109 ------------------------------------DCKPEIDKVIVVSPSSLVRNWYNEVGKWLGG--RVQPVAIDGGS 150 (298)
T ss_dssp ------------------------------------TSSCSCSCEEEEECHHHHHHHHHHHHHHHGG--GCCEEEECSSC
T ss_pred ------------------------------------CCCCCCCCEEEECCCHHHHHHHHHHHHHCCC--CEEEEEEECCH
T ss_conf ------------------------------------1168877379980504557899988763577--52599996862
Q ss_pred CCCC----------CCCCCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 8889----------000179849991401020127999997456764211554577502334444210010001245788
Q 002565 423 RTKD----------PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGK 492 (907)
Q Consensus 423 r~~~----------~~~l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~ 492 (907)
+.+. ......++++|+||+.+..+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~-------------------------------------------- 186 (298)
T d1z3ix2 151 KDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE-------------------------------------------- 186 (298)
T ss_dssp HHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--------------------------------------------
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHH--------------------------------------------
T ss_conf 777888998765303766661399986123222200--------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCH
Q ss_conf 88878876668888632340399983576569931089999994002814897266754641356656775336788756
Q 002565 493 KGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVY 572 (907)
Q Consensus 493 k~~~~~~~~~~~~~L~~i~w~rVILDEAH~IKN~~s~~skA~~~L~a~~Rw~LTGTPiqN~l~DL~sll~FL~~~~~~~~ 572 (907)
.+..+.|++||+||||.+||..++.+++++.|++++||+|||||++|++.|||++++||.|++|+++
T Consensus 187 -------------~l~~~~~~~vI~DEaH~ikn~~s~~~~a~~~l~~~~rllLTGTPi~N~~~dl~~ll~fl~p~~~~~~ 253 (298)
T d1z3ix2 187 -------------VLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTA 253 (298)
T ss_dssp -------------TTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCH
T ss_pred -------------CCCCCCEEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf -------------0334211454114232201322034564421341125652260776666889999987487757999
Q ss_pred HHHHHHHCCCCCCCC------------HHHHHHHHHHHHHHHHHH
Q ss_conf 889967145554585------------566799999999987561
Q 002565 573 KSFYSTIKIPISRNS------------LHGYKKLQAVLRAIMLRR 605 (907)
Q Consensus 573 ~~F~~~~~~pi~~~~------------~~~~~~Lq~lL~~~mLRR 605 (907)
..|.+.|..|+..+. ...+.+|+.++++|||||
T Consensus 254 ~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~lRR 298 (298)
T d1z3ix2 254 QEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRR 298 (298)
T ss_dssp HHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECC
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECC
T ss_conf 999999966987376668767889989999999999722231679
No 2
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=100.00 E-value=0 Score=353.56 Aligned_cols=226 Identities=36% Similarity=0.603 Sum_probs=194.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCC
Q ss_conf 57898754466726799999999982103666668512317888458999999997310023310222034211125689
Q 002565 264 ATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLD 343 (907)
Q Consensus 264 ~~~P~~~l~~~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (907)
..+|.+ ++..|+|||++|+.||+.++.. ..|||||||||||||+++|+++......
T Consensus 3 ~~~P~~-~~~~L~~yQ~~~v~~~~~~~~~---~~g~iLaDe~GlGKT~~~i~~~~~~~~~-------------------- 58 (230)
T d1z63a1 3 LLEPYN-IKANLRPYQIKGFSWMRFMNKL---GFGICLADDMGLGKTLQTIAVFSDAKKE-------------------- 58 (230)
T ss_dssp CCCCCS-CSSCCCHHHHHHHHHHHHHHHT---TCCEEECCCTTSCHHHHHHHHHHHHHHT--------------------
T ss_pred CCCCHH-HHCCHHHHHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHHHC--------------------
T ss_conf 769446-5045069999999999986216---9987998589988699998735544212--------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 88888886753322369888999987766553333688999973999682459999999997699999808999968998
Q 002565 344 DDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSR 423 (907)
Q Consensus 344 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r 423 (907)
.+..++|||||++++.||.+|+.+|+. ...+..++....
T Consensus 59 --------------------------------------~~~~~~LIv~p~~l~~~W~~e~~~~~~---~~~~~~~~~~~~ 97 (230)
T d1z63a1 59 --------------------------------------NELTPSLVICPLSVLKNWEEELSKFAP---HLRFAVFHEDRS 97 (230)
T ss_dssp --------------------------------------TCCSSEEEEECSTTHHHHHHHHHHHCT---TSCEEECSSSTT
T ss_pred --------------------------------------CCCCCCCEECCHHHHHHHHHHHHHHCC---CCCCEEECCCCC
T ss_conf --------------------------------------355644110535542677777776402---544101014210
Q ss_pred CCCCCCCCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88900017984999140102012799999745676421155457750233444421001000124578888878876668
Q 002565 424 TKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYG 503 (907)
Q Consensus 424 ~~~~~~l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~ 503 (907)
. ....+++|||++|+.+.+..
T Consensus 98 ~---~~~~~~~vvi~~~~~~~~~~-------------------------------------------------------- 118 (230)
T d1z63a1 98 K---IKLEDYDIILTTYAVLLRDT-------------------------------------------------------- 118 (230)
T ss_dssp S---CCGGGSSEEEEEHHHHTTCH--------------------------------------------------------
T ss_pred H---HHCCCCCEEEEEHHHHHHHH--------------------------------------------------------
T ss_conf 0---00257688985499998688--------------------------------------------------------
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
Q ss_conf 88863234039998357656993108999999400281489726675464135665677533678875688996714555
Q 002565 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPI 583 (907)
Q Consensus 504 ~~~L~~i~w~rVILDEAH~IKN~~s~~skA~~~L~a~~Rw~LTGTPiqN~l~DL~sll~FL~~~~~~~~~~F~~~~~~pi 583 (907)
.+..+.|.+||+||||.+||..++++++++.+++++||+|||||++|++.|||++++||.|++|+++..|...|+.++
T Consensus 119 --~l~~~~~~~vI~DEah~~k~~~s~~~~~~~~l~a~~r~~LTgTPi~n~~~dl~~ll~~l~p~~~~~~~~F~~~~~~~~ 196 (230)
T d1z63a1 119 --RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPI 196 (230)
T ss_dssp --HHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHH
T ss_pred --HHHCCCCEEEEEEHHHCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf --874165139999710034432205566654404655799725267767888998887628986789999999984455
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCC
Q ss_conf 458556679999999998756134642--4798744799
Q 002565 584 SRNSLHGYKKLQAVLRAIMLRRTKGTF--IDGQPIINLP 620 (907)
Q Consensus 584 ~~~~~~~~~~Lq~lL~~~mLRRtK~dv--~~g~pii~LP 620 (907)
..+.....++|+.++++||+||+|+|+ +. +||
T Consensus 197 ~~~~~~~~~~L~~~l~~~~lRr~K~d~~v~~-----dLP 230 (230)
T d1z63a1 197 KKGDNMAKEELKAIISPFILRRTKYDKAIIN-----DLP 230 (230)
T ss_dssp HTTCHHHHHHHHHHHTTTEECCCTTCHHHHT-----TSC
T ss_pred HCCCHHHHHHHHHHHHCCEEEEECCCCCHHH-----CCC
T ss_conf 3267789999999842337997168861755-----679
No 3
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=99.90 E-value=2.1e-23 Score=166.72 Aligned_cols=165 Identities=23% Similarity=0.283 Sum_probs=117.0
Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 79997079999179899999999999999999999983187631099999999999996289203243355532222189
Q 002565 618 NLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGE 697 (907)
Q Consensus 618 ~LP~k~~~vv~v~lS~eEr~lY~~l~~~~~~~~~~~~~~g~~~~~~~~iL~~L~rLRqic~HP~Lv~~~~~~~~~~~~~e 697 (907)
.||||++.+++|+||+.|+++|+.+....+.. ...........+|..+++|||+||||.|+..........
T Consensus 8 ~LP~K~e~vv~v~LS~~Q~~lY~~~l~~~~~~-----~~~~~~~~~~~~L~~l~~LRkiCnHP~L~~~~~~~~~~~---- 78 (346)
T d1z3ix1 8 YLPVKIEQVVCCNLTPLQKELYKLFLKQAKPV-----ESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEG---- 78 (346)
T ss_dssp TSCCEEEEEEEECCCHHHHHHHHHHHHHHCGG-----GSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTT----
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-----HHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCC----
T ss_conf 08898799999697999999999999989999-----865448716899999999999957998861111022112----
Q ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86119946899999741014532344689999951234675233111211025999989986433645755201101223
Q 002565 698 MAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLK 777 (907)
Q Consensus 698 ~~k~l~~e~~~~ll~~le~~~~~C~iC~d~~e~pvit~C~H~fC~~Ci~~~~~~~~~~CP~~~C~~~l~~~~~~~~~~l~ 777 (907)
.. +.....|
T Consensus 79 -------------------~~--------------------------------~~~~~~~-------------------- 87 (346)
T d1z3ix1 79 -------------------FD--------------------------------GALDLFP-------------------- 87 (346)
T ss_dssp -------------------CT--------------------------------TGGGTSC--------------------
T ss_pred -------------------CC--------------------------------CHHHHCC--------------------
T ss_conf -------------------32--------------------------------0033123--------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 45688999999999545667876787664469999999997531058764122201248889875457899889962999
Q 002565 778 NCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIV 857 (907)
Q Consensus 778 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~SsKi~aLlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVIV 857 (907)
............|+|+..|.++|..+.... ++||||
T Consensus 88 ----------------~~~~~~~~~~~~S~Kl~~L~~ll~~~~~~~----------------------------g~KvlI 123 (346)
T d1z3ix1 88 ----------------QNYSTKAVEPQLSGKMLVLDYILAMTRTTT----------------------------SDKVVL 123 (346)
T ss_dssp ----------------SSCCSSSCCGGGSHHHHHHHHHHHHHHHHC----------------------------CCEEEE
T ss_pred ----------------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHC----------------------------CCCEEE
T ss_conf ----------------341000014001789999999999988751----------------------------895168
Q ss_pred EECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCC-CCC
Q ss_conf 9143333999999997589819999726998999999997228999-635
Q 002565 858 FSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDRE-VCS 906 (907)
Q Consensus 858 FSQft~~LdiLe~~L~~~gi~~~rldGsms~~~R~~~I~~F~~dp~-v~V 906 (907)
||||+.++++|+..|+..||.|.+++|+|+..+|+.+|+.|+++.. ..|
T Consensus 124 Fs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v 173 (346)
T d1z3ix1 124 VSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFI 173 (346)
T ss_dssp EESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCE
T ss_pred EEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 86301456799999763002411011100278899999865102343302
No 4
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=99.88 E-value=2.9e-22 Score=159.31 Aligned_cols=140 Identities=24% Similarity=0.314 Sum_probs=117.1
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 70799991798999999999999999999999831876310999999999999962892032433555322221898611
Q 002565 622 KTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKR 701 (907)
Q Consensus 622 k~~~vv~v~lS~eEr~lY~~l~~~~~~~~~~~~~~g~~~~~~~~iL~~L~rLRqic~HP~Lv~~~~~~~~~~~~~e~~k~ 701 (907)
|++++++|+||++|+++|+.+.......+ ...........+|..+++|||+|+||.|+...+.
T Consensus 1 Kie~~v~~~ls~~Q~~~Y~~~~~~~~~~~----~~~~~~~~~~~iL~~l~~Lrqic~hP~l~~~~~~------------- 63 (244)
T d1z5za1 1 KIETNVYCNLTPEQAAMYKAEVENLFNNI----DSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQ------------- 63 (244)
T ss_dssp CEEEEEEECCCHHHHHHHHHHHHHHHHHT----TTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSCC-------------
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC-------------
T ss_conf 98999994989999999999999999987----6112400278999999998765228752123331-------------
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99468999997410145323446899999512346752331112110259999899864336457552011012234568
Q 002565 702 LPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVS 781 (907)
Q Consensus 702 l~~e~~~~ll~~le~~~~~C~iC~d~~e~pvit~C~H~fC~~Ci~~~~~~~~~~CP~~~C~~~l~~~~~~~~~~l~~~~~ 781 (907)
T Consensus 64 -------------------------------------------------------------------------------- 63 (244)
T d1z5za1 64 -------------------------------------------------------------------------------- 63 (244)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 89999999995456678767876644699999999975310587641222012488898754578998899629999143
Q 002565 782 DDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQW 861 (907)
Q Consensus 782 d~~~~~~~~~~~~~~~~~~~~~~~SsKi~aLlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVIVFSQf 861 (907)
....|+|+.+++++|..+...++ ||||||+|
T Consensus 64 --------------------~~~~S~K~~~l~~~l~~~~~~g~-----------------------------kviIFs~~ 94 (244)
T d1z5za1 64 --------------------SVRRSGKMIRTMEIIEEALDEGD-----------------------------KIAIFTQF 94 (244)
T ss_dssp --------------------CSTTCHHHHHHHHHHHHHHHTTC-----------------------------CEEEEESC
T ss_pred --------------------CHHHHHHHHHHHHHHHHHCCCCC-----------------------------CEEEEEEC
T ss_conf --------------------02120689999998876414666-----------------------------25999601
Q ss_pred HHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 33399999999758-98199997269989999999972289996359
Q 002565 862 TRMLDLVENSLNQH-CIQYRRLDGTMSLPARDRAVKDFNTDREVCSL 907 (907)
Q Consensus 862 t~~LdiLe~~L~~~-gi~~~rldGsms~~~R~~~I~~F~~dp~v~VL 907 (907)
+.++++|+..|... |+.+.+++|+++..+|+.++++|+++++++||
T Consensus 95 ~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vl 141 (244)
T d1z5za1 95 VDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFI 141 (244)
T ss_dssp HHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEE
T ss_pred EEHHHHHHHHHHHHCCCEEEEEECCCCHHCCCHHHHHHHCCCCCHHC
T ss_conf 00677899998761351289996664200011045544301210010
No 5
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.85 E-value=8.7e-21 Score=149.66 Aligned_cols=138 Identities=21% Similarity=0.202 Sum_probs=102.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 44667267999999999821036666685123178884589999999973100233102220342111256898888888
Q 002565 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (907)
Q Consensus 271 l~~~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (907)
...+|++||.+++.+++.. ..|||+++||+|||+++++++...
T Consensus 67 ~~~~Lr~yQ~eav~~~~~~-------~~~ll~~~tG~GKT~~a~~~~~~~------------------------------ 109 (206)
T d2fz4a1 67 AEISLRDYQEKALERWLVD-------KRGCIVLPTGSGKTHVAMAAINEL------------------------------ 109 (206)
T ss_dssp CCCCCCHHHHHHHHHHTTT-------SEEEEEESSSTTHHHHHHHHHHHS------------------------------
T ss_pred CCCCCCHHHHHHHHHHHHC-------CCCEEEECCCCCCEEHHHHHHHHH------------------------------
T ss_conf 9998499999999999967-------990999578998264377678774------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH-HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 6753322369888999987766553333688999973999682-459999999997699999808999968998889000
Q 002565 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE 429 (907)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~~ 429 (907)
.+++|||||. +++.||.+++.++.+ ..+..+.|...
T Consensus 110 ---------------------------------~~~~Liv~p~~~L~~q~~~~~~~~~~----~~~~~~~~~~~------ 146 (206)
T d2fz4a1 110 ---------------------------------STPTLIVVPTLALAEQWKERLGIFGE----EYVGEFSGRIK------ 146 (206)
T ss_dssp ---------------------------------CSCEEEEESSHHHHHHHHHHHGGGCG----GGEEEESSSCB------
T ss_pred ---------------------------------CCCEEEEECCCCHHHHHHHHHHHHCC----CCHHHCCCCCC------
T ss_conf ---------------------------------67245787242248999999986155----11110146532------
Q ss_pred CCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 17984999140102012799999745676421155457750233444421001000124578888878876668888632
Q 002565 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (907)
Q Consensus 430 l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~ 509 (907)
...+++|++|..+..... ...
T Consensus 147 -~~~~i~i~t~~~~~~~~~----------------------------------------------------------~~~ 167 (206)
T d2fz4a1 147 -ELKPLTVSTYDSAYVNAE----------------------------------------------------------KLG 167 (206)
T ss_dssp -CCCSEEEEEHHHHHHTHH----------------------------------------------------------HHT
T ss_pred -CCCCCCCCEEHHHHHHHH----------------------------------------------------------HHC
T ss_conf -102100123225555367----------------------------------------------------------657
Q ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 3403999835765699310899999940028148972667
Q 002565 510 VGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTP 549 (907)
Q Consensus 510 i~w~rVILDEAH~IKN~~s~~skA~~~L~a~~Rw~LTGTP 549 (907)
-.|+.||+||+|.+++. ...+.+..+.+.+|++||||+
T Consensus 168 ~~~~lvIiDEaH~~~a~--~~~~i~~~~~~~~~lgLTATl 205 (206)
T d2fz4a1 168 NRFMLLIFDEVHHLPAE--SYVQIAQMSIAPFRLGLTATF 205 (206)
T ss_dssp TTCSEEEEECSSCCCTT--THHHHHHTCCCSEEEEEEESC
T ss_pred CCCCEEEEECCEECCCH--HHHHHHHCCCCCCEEEEECCC
T ss_conf 75779999898217837--999998506898489995589
No 6
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}
Probab=99.84 E-value=3e-20 Score=146.20 Aligned_cols=167 Identities=17% Similarity=0.138 Sum_probs=112.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 44667267999999999821036666685123178884589999999973100233102220342111256898888888
Q 002565 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (907)
Q Consensus 271 l~~~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (907)
....||+||..++..++... .|||...+|+|||+++.+++......
T Consensus 110 ~~~~~rdyQ~~av~~~l~~~-------~~il~~pTGsGKT~i~~~i~~~~~~~--------------------------- 155 (282)
T d1rifa_ 110 KRIEPHWYQKDAVFEGLVNR-------RRILNLPTSAGRSLIQALLARYYLEN--------------------------- 155 (282)
T ss_dssp EECCCCHHHHHHHHHHHHHS-------EEEECCCTTSCHHHHHHHHHHHHHHH---------------------------
T ss_pred CCCCCCHHHHHHHHHHHHCC-------CCEEEEECCCCCCHHHHHHHHHHHHC---------------------------
T ss_conf 74656467778779998549-------72168871158307889999986532---------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH-HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 6753322369888999987766553333688999973999682-459999999997699999808999968998889000
Q 002565 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE 429 (907)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~~ 429 (907)
...++|||||. +|+.||.++|.++.... ...+...+++. .+....
T Consensus 156 --------------------------------~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~-~~~~~~~~~g~-~~~~~~ 201 (282)
T d1rifa_ 156 --------------------------------YEGKILIIVPTTALTTQMADDFVDYRLFS-HAMIKKIGGGA-SKDDKY 201 (282)
T ss_dssp --------------------------------CSSEEEEECSSHHHHHHHHHHHHHHTSCC-GGGEEECSTTC-SSTTCC
T ss_pred --------------------------------CCCEEEEEECCCHHHHHHHHHHHHHHCCC-CCCCEEECCEE-CCCCCC
T ss_conf --------------------------------56328999767225789999998750365-34530340200-256523
Q ss_pred CCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 17984999140102012799999745676421155457750233444421001000124578888878876668888632
Q 002565 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (907)
Q Consensus 430 l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~ 509 (907)
....+++++|+..+...... + .
T Consensus 202 ~~~~~i~i~t~qs~~~~~~~---------------------------------------------------------~-~ 223 (282)
T d1rifa_ 202 KNDAPVVVGTWQTVVKQPKE---------------------------------------------------------W-F 223 (282)
T ss_dssp CTTCSEEEECHHHHTTSCGG---------------------------------------------------------G-G
T ss_pred CCCCEEEEEEEEHHHHHCCC---------------------------------------------------------C-C
T ss_conf 32326999864032220210---------------------------------------------------------0-5
Q ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHH-HCCCEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 3403999835765699310899999940-02814897266754641356656775336
Q 002565 510 VGWFRVVLDEAQTIKNHRTQVARACCSL-RAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566 (907)
Q Consensus 510 i~w~rVILDEAH~IKN~~s~~skA~~~L-~a~~Rw~LTGTPiqN~l~DL~sll~FL~~ 566 (907)
-.|+.||+||||.++... ..+.+..+ .+++||+|||||-.... +.|.+..+++|
T Consensus 224 ~~f~~VIvDEaH~~~a~~--~~~il~~~~~~~~rlGlTaT~~~~~~-~~~~l~g~~Gp 278 (282)
T d1rifa_ 224 SQFGMMMNDECHLATGKS--ISSIISGLNNCMFKFGLSGSLRDGKA-NIMQYVGMFGE 278 (282)
T ss_dssp GGEEEEEEETGGGCCHHH--HHHHTTTCTTCCEEEEECSSCCTTST-THHHHHHHHCE
T ss_pred CCCCEEEEECCCCCCCHH--HHHHHHHCCCCCEEEEEEEECCCCCC-CEEEEEEECCC
T ss_conf 788799998997888320--99999746188969999961599873-44898420677
No 7
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.67 E-value=1.6e-16 Score=121.98 Aligned_cols=170 Identities=15% Similarity=0.173 Sum_probs=112.2
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66726799999999982103666668512317888458999999997310023310222034211125689888888867
Q 002565 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (907)
Q Consensus 273 ~~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (907)
.++++||..++.++..+ -+|++..+|.|||+.++.++.....
T Consensus 8 ~~pr~~Q~~~~~~~~~~--------n~lv~~pTGsGKT~i~~~~~~~~~~------------------------------ 49 (200)
T d1wp9a1 8 IQPRIYQEVIYAKCKET--------NCLIVLPTGLGKTLIAMMIAEYRLT------------------------------ 49 (200)
T ss_dssp HCCCHHHHHHHHHGGGS--------CEEEECCTTSCHHHHHHHHHHHHHH------------------------------
T ss_pred CCCCHHHHHHHHHHHCC--------CEEEEECCCCCHHHHHHHHHHHHHH------------------------------
T ss_conf 89889999999999639--------9699918997288999999999997------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC-HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC-CCC
Q ss_conf 5332236988899998776655333368899997399968-24599999999976999998089999689988890-001
Q 002565 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCP-ASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VEL 430 (907)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P-~sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~-~~l 430 (907)
...+.+|||+| .+|+.||.+++.+++... ..++..+++....... ..+
T Consensus 50 -----------------------------~~~~~il~i~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~ 99 (200)
T d1wp9a1 50 -----------------------------KYGGKVLMLAPTKPLVLQHAESFRRLFNLP-PEKIVALTGEKSPEERSKAW 99 (200)
T ss_dssp -----------------------------HSCSCEEEECSSHHHHHHHHHHHHHHBCSC-GGGEEEECSCSCHHHHHHHH
T ss_pred -----------------------------HCCCCEEEECCCHHHHHHHHHHHHHHHCCC-CCCEEEEECCCCHHHHHHHH
T ss_conf -----------------------------069818997370577778899999863355-42013420366456777765
Q ss_pred CCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79849991401020127999997456764211554577502334444210010001245788888788766688886323
Q 002565 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (907)
Q Consensus 431 ~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i 510 (907)
.++.++++|+..+.+.... ..+..-
T Consensus 100 ~~~~i~i~t~~~~~~~~~~-------------------------------------------------------~~~~~~ 124 (200)
T d1wp9a1 100 ARAKVIVATPQTIENDLLA-------------------------------------------------------GRISLE 124 (200)
T ss_dssp HHCSEEEECHHHHHHHHHT-------------------------------------------------------TSCCTT
T ss_pred HCCCCCCCCCCHHHHHHHH-------------------------------------------------------HHHHCC
T ss_conf 1142223432025778763-------------------------------------------------------133115
Q ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHH---HCCCEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 403999835765699310899999940---02814897266754641356656775336
Q 002565 511 GWFRVVLDEAQTIKNHRTQVARACCSL---RAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566 (907)
Q Consensus 511 ~w~rVILDEAH~IKN~~s~~skA~~~L---~a~~Rw~LTGTPiqN~l~DL~sll~FL~~ 566 (907)
.|..||+||+|.+.+............ ...+.+++||||- +...++-.++..|..
T Consensus 125 ~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~l~~SATp~-~~~~~~~~~~~~l~~ 182 (200)
T d1wp9a1 125 DVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGI 182 (200)
T ss_dssp SCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTC
T ss_pred CCCEEEEEEHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEECCC-CCHHHHHHHHHCCCC
T ss_conf 6661899862113122168999999986589985799996179-739999999846995
No 8
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.49 E-value=1.5e-13 Score=102.64 Aligned_cols=166 Identities=18% Similarity=0.192 Sum_probs=108.4
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67267999999999821036666685123178884589999999973100233102220342111256898888888675
Q 002565 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (907)
Q Consensus 274 ~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (907)
.|+|||.+++..+++. ..+|++..+|.|||..++..+.....
T Consensus 25 ~l~~~Q~~ai~~l~~~-------~~~il~apTGsGKT~~a~l~i~~~~~------------------------------- 66 (202)
T d2p6ra3 25 ELFPPQAEAVEKVFSG-------KNLLLAMPTAAGKTLLAEMAMVREAI------------------------------- 66 (202)
T ss_dssp CCCCCCHHHHHHHTTC-------SCEEEECSSHHHHHHHHHHHHHHHHH-------------------------------
T ss_pred CCCHHHHHHHHHHHCC-------CCEEEECCCCCCHHHHHHHHHHHHHH-------------------------------
T ss_conf 9999999999999849-------99899868998511789999998762-------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH-HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 3322369888999987766553333688999973999682-459999999997699999808999968998889000179
Q 002565 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAK 432 (907)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~~l~~ 432 (907)
..+.+|+|+|. +|+.||.+++.++.+. ..++.++.|....+ ......
T Consensus 67 -----------------------------~~~~vl~l~P~~~L~~q~~~~~~~~~~~--~~~v~~~~~~~~~~-~~~~~~ 114 (202)
T d2p6ra3 67 -----------------------------KGGKSLYVVPLRALAGEKYESFKKWEKI--GLRIGISTGDYESR-DEHLGD 114 (202)
T ss_dssp -----------------------------TTCCEEEEESSHHHHHHHHHHHTTTTTT--TCCEEEECSSCBCC-SSCSTT
T ss_pred -----------------------------CCCCCEEECCCHHHHHHHHHHHHHHHHC--CCCCEEECCCCCCC-CCCCCC
T ss_conf -----------------------------2576033166278999999999998632--44310002674332-212232
Q ss_pred CCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 84999140102012799999745676421155457750233444421001000124578888878876668888632340
Q 002565 433 YDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGW 512 (907)
Q Consensus 433 ~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i~w 512 (907)
.++++++...+....... ...-..+
T Consensus 115 ~~ii~~~~~~~~~~~~~~-------------------------------------------------------~~~~~~~ 139 (202)
T d2p6ra3 115 CDIIVTTSEKADSLIRNR-------------------------------------------------------ASWIKAV 139 (202)
T ss_dssp CSEEEEEHHHHHHHHHTT-------------------------------------------------------CSGGGGC
T ss_pred CCEEEECCHHHHHHHHCC-------------------------------------------------------CHHHHHH
T ss_conf 212540108998887511-------------------------------------------------------0011032
Q ss_pred CEEEECCCCCCCCCC--HHHHHHHHHH----HCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 399983576569931--0899999940----02814897266754641356656775336788
Q 002565 513 FRVVLDEAQTIKNHR--TQVARACCSL----RAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPY 569 (907)
Q Consensus 513 ~rVILDEAH~IKN~~--s~~skA~~~L----~a~~Rw~LTGTPiqN~l~DL~sll~FL~~~~~ 569 (907)
..||+||+|.+.+.. ......+..+ +..++++||||- .| +.++ .+||+.++|
T Consensus 140 ~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~~~~~l~lSATl-~n-~~~~---~~~l~~~~~ 197 (202)
T d2p6ra3 140 SCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATA-PN-VTEI---AEWLDADYY 197 (202)
T ss_dssp CEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCC-TT-HHHH---HHHTTCEEE
T ss_pred HHCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCC-CC-HHHH---HHHCCCCEE
T ss_conf 2224658777535543137999999998659998389981788-75-9999---987089821
No 9
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.21 E-value=1.2e-10 Score=83.76 Aligned_cols=106 Identities=19% Similarity=0.211 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67267999999999821036666685123178884589999999973100233102220342111256898888888675
Q 002565 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (907)
Q Consensus 274 ~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (907)
.++++|+.++..++.. +..++.-..|.|||+..+..+....
T Consensus 43 ~p~~~Q~~~i~~~l~g-------~~~~i~apTGsGKT~~~~~~~~~~~-------------------------------- 83 (237)
T d1gkub1 43 EPRAIQKMWAKRILRK-------ESFAATAPTGVGKTSFGLAMSLFLA-------------------------------- 83 (237)
T ss_dssp SCCHHHHHHHHHHHTT-------CCEECCCCBTSCSHHHHHHHHHHHH--------------------------------
T ss_pred CCCHHHHHHHHHHHCC-------CCEEEEECCCCHHHHHHHHHHHHHH--------------------------------
T ss_conf 9989999999999779-------9779992689769999999999998--------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH-HHHHHHHHHHHHHCCCC---CCEEEEEEECCCCCCCC--
Q ss_conf 3322369888999987766553333688999973999682-45999999999769999---98089999689988890--
Q 002565 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDK---AALSVLIYHGGSRTKDP-- 427 (907)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sll~qW~~Ei~k~~~~~---~~l~Vlvy~G~~r~~~~-- 427 (907)
...+.+|||+|. .|+.||.+++.+++... ....+..+++.......
T Consensus 84 ----------------------------~~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (237)
T d1gkub1 84 ----------------------------LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKEN 135 (237)
T ss_dssp ----------------------------TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHH
T ss_pred ----------------------------HHCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHH
T ss_conf ----------------------------7458389994449999999999999999849946999855422541235655
Q ss_pred --CCCCCCCEEEECCHHHCCC
Q ss_conf --0017984999140102012
Q 002565 428 --VELAKYDVVLTTYSIVTNE 446 (907)
Q Consensus 428 --~~l~~~dVVItTY~~l~~e 446 (907)
.....++|+|+|++.+...
T Consensus 136 ~l~~~~~~~Ilv~Tp~~l~~~ 156 (237)
T d1gkub1 136 FMQNLRNFKIVITTTQFLSKH 156 (237)
T ss_dssp HHHSGGGCSEEEEEHHHHHHC
T ss_pred HHCCCCCCCEECCCHHHHHHH
T ss_conf 540344442322686999975
No 10
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.20 E-value=6.8e-11 Score=85.34 Aligned_cols=168 Identities=20% Similarity=0.205 Sum_probs=113.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 44667267999999999821036666685123178884589999999973100233102220342111256898888888
Q 002565 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (907)
Q Consensus 271 l~~~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (907)
+...|-+-|+.++.-+.....+.. ..--+|.-|+|.|||+.++..+......
T Consensus 80 LPFeLT~~Q~~ai~ei~~d~~~~~-~m~rLL~GdvGSGKT~Va~~a~~~~~~~--------------------------- 131 (264)
T d1gm5a3 80 LPFKLTNAQKRAHQEIRNDMISEK-PMNRLLQGDVGSGKTVVAQLAILDNYEA--------------------------- 131 (264)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHSSS-CCCCEEECCSSSSHHHHHHHHHHHHHHH---------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCHHHHHHHHHHHHC---------------------------
T ss_conf 046678037888999998762367-5315666353556659999999998851---------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHH-HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC-
Q ss_conf 67533223698889999877665533336889999739996824-5999999999769999980899996899888900-
Q 002565 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV- 428 (907)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-ll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~- 428 (907)
...+++++|.. |..|+...+.++++.- ...+.+++|....+...
T Consensus 132 ---------------------------------g~q~~~m~Pt~~La~Qh~~~~~~~f~~~-~~~v~~l~~~~~~~~r~~ 177 (264)
T d1gm5a3 132 ---------------------------------GFQTAFMVPTSILAIQHYRRTVESFSKF-NIHVALLIGATTPSEKEK 177 (264)
T ss_dssp ---------------------------------TSCEEEECSCHHHHHHHHHHHHHHHTCS-SCCEEECCSSSCHHHHHH
T ss_pred ---------------------------------CCCEEEEEEHHHHHHHHHHHHHHHHHHC-CCCCEEECCCCCHHHHHH
T ss_conf ---------------------------------3550587404766578999998862012-312111011013699999
Q ss_pred -----CCCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -----017984999140102012799999745676421155457750233444421001000124578888878876668
Q 002565 429 -----ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYG 503 (907)
Q Consensus 429 -----~l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~ 503 (907)
.-++.++||-|+..+..+++.
T Consensus 178 ~~~~~~~g~~~iiIGThsl~~~~~~f------------------------------------------------------ 203 (264)
T d1gm5a3 178 IKSGLRNGQIDVVIGTHALIQEDVHF------------------------------------------------------ 203 (264)
T ss_dssp HHHHHHSSCCCEEEECTTHHHHCCCC------------------------------------------------------
T ss_pred HHHHHHCCCCCEEEEEHHHHCCCCCC------------------------------------------------------
T ss_conf 99999779979999653885489874------------------------------------------------------
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHH-HHHHHHH
Q ss_conf 8886323403999835765699310899999940028148972667546413-5665677
Q 002565 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSID-DLYSYFR 562 (907)
Q Consensus 504 ~~~L~~i~w~rVILDEAH~IKN~~s~~skA~~~L~a~~Rw~LTGTPiqN~l~-DL~sll~ 562 (907)
. ..+.||+||-|...-.. +......-+....+.+|+|||..++. -+|+-++
T Consensus 204 ----~--~LglviiDEqH~fgv~Q--r~~l~~~~~~~~~l~~SATPiprtl~~~~~g~~~ 255 (264)
T d1gm5a3 204 ----K--NLGLVIIDEQHRFGVKQ--REALMNKGKMVDTLVMSATPIPRSMALAFYGDLD 255 (264)
T ss_dssp ----S--CCCEEEEESCCCC-------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSS
T ss_pred ----C--CCCEEEECCCCCCCHHH--HHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCC
T ss_conf ----5--56225632421002434--7999971869998999798899999999838987
No 11
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.13 E-value=2e-10 Score=82.25 Aligned_cols=123 Identities=11% Similarity=0.030 Sum_probs=75.7
Q ss_pred CCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68512317888458999999997310023310222034211125689888888867533223698889999877665533
Q 002565 297 LGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTR 376 (907)
Q Consensus 297 ~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 376 (907)
+-+||....|.|||++++.++..
T Consensus 9 ~~~ll~apTGsGKT~~~~~~~~~--------------------------------------------------------- 31 (136)
T d1a1va1 9 QVAHLHAPTGSGKSTKVPAAYAA--------------------------------------------------------- 31 (136)
T ss_dssp EEEEEECCTTSCTTTHHHHHHHT---------------------------------------------------------
T ss_pred CEEEEEECCCCCHHHHHHHHHHH---------------------------------------------------------
T ss_conf 88999968877999999999998---------------------------------------------------------
Q ss_pred CCCCCCCCCCEEEEECH-HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCHHHCCCCCCCCCCCH
Q ss_conf 33688999973999682-45999999999769999980899996899888900017984999140102012799999745
Q 002565 377 SFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDE 455 (907)
Q Consensus 377 ~~~~~~~~~~tLIV~P~-sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~~l~~~dVVItTY~~l~~e~~~~~~~~~ 455 (907)
....+||++|. .+..||..++.+++.. .....+.+. .......+++.++........
T Consensus 32 ------~~~~vli~~P~~~l~~q~~~~~~~~~~~---~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~------- 89 (136)
T d1a1va1 32 ------QGYKVLVLNPSVAATLGFGAYMSKAHGV---DPNIRTGVR------TITTGSPITYSTYGKFLADGG------- 89 (136)
T ss_dssp ------TTCCEEEEESCHHHHHHHHHHHHHHHSC---CCEEECSSC------EECCCCSEEEEEHHHHHHTTG-------
T ss_pred ------CCCCEEEECCHHHHHHHHHHHHHHHHHC---CCCCCCCCC------CCCCCCCEEEEEEEEECCCCC-------
T ss_conf ------6993999767699999999999998520---246430012------211344227886410002353-------
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHH-HHH
Q ss_conf 6764211554577502334444210010001245788888788766688886323403999835765699310899-999
Q 002565 456 EEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVA-RAC 534 (907)
Q Consensus 456 ~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i~w~rVILDEAH~IKN~~s~~s-kA~ 534 (907)
-.--.|+.||+||+|.+........ .+.
T Consensus 90 ---------------------------------------------------~~~~~~~~vIiDE~H~~~~~~~~~~~~~l 118 (136)
T d1a1va1 90 ---------------------------------------------------CSGGAYDIIICDECHSTDATSILGIGTVL 118 (136)
T ss_dssp ---------------------------------------------------GGGCCCSEEEEETTTCCSHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf ---------------------------------------------------02415999998255535887899999999
Q ss_pred HHHHC---CCEEEEECCC
Q ss_conf 94002---8148972667
Q 002565 535 CSLRA---KRRWCLSGTP 549 (907)
Q Consensus 535 ~~L~a---~~Rw~LTGTP 549 (907)
..++. ...+.||+||
T Consensus 119 ~~~~~~~~~~~l~~TATP 136 (136)
T d1a1va1 119 DQAETAGARLVVLATATP 136 (136)
T ss_dssp HHTTTTTCSEEEEEESSC
T ss_pred HHHHHCCCCCEEEEECCC
T ss_conf 999877997299992799
No 12
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=99.07 E-value=3.4e-10 Score=80.79 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=26.5
Q ss_pred CCCCCEEEECCCCCCCCCCHHHHHHHH----HHHCCCEEEEECCCC
Q ss_conf 234039998357656993108999999----400281489726675
Q 002565 509 KVGWFRVVLDEAQTIKNHRTQVARACC----SLRAKRRWCLSGTPI 550 (907)
Q Consensus 509 ~i~w~rVILDEAH~IKN~~s~~skA~~----~L~a~~Rw~LTGTPi 550 (907)
...|+.||+||+|.+.. .+...+... .....+.++|||||.
T Consensus 96 ~~~~~lvIiDEaH~~~~-~~~~~~~~~~~~~~~~~~~~l~lTATPp 140 (140)
T d1yksa1 96 VVNWEVIIMDEAHFLDP-ASIAARGWAAHRARANESATILMTATPP 140 (140)
T ss_dssp CCCCSEEEETTTTCCSH-HHHHHHHHHHHHHHTTSCEEEEECSSCT
T ss_pred CCCEEEEEECCCCCCCH-HHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 46420899754334675-4399999999982579999899982999
No 13
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=98.97 E-value=2.6e-10 Score=81.55 Aligned_cols=164 Identities=13% Similarity=0.072 Sum_probs=98.8
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66726799999999982103666668512317888458999999997310023310222034211125689888888867
Q 002565 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (907)
Q Consensus 273 ~~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (907)
..|+|||.+++.-+++. +-.|+.-..|.|||+..+..+..
T Consensus 24 ~~~rp~Q~~ai~~~l~g-------~~vlv~apTGsGKT~~~~~~~~~--------------------------------- 63 (206)
T d1oywa2 24 QQFRPGQEEIIDTVLSG-------RDCLVVMPTGGGKSLCYQIPALL--------------------------------- 63 (206)
T ss_dssp SSCCTTHHHHHHHHHTT-------CCEEEECSCHHHHHHHHHHHHHH---------------------------------
T ss_pred CCCCHHHHHHHHHHHCC-------CCEEEECCCCCCCCCHHHHHHHH---------------------------------
T ss_conf 99998999999999869-------98899867889975231202554---------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH-HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC------
Q ss_conf 53322369888999987766553333688999973999682-45999999999769999980899996899888------
Q 002565 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTK------ 425 (907)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~-sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~------ 425 (907)
..+.+++|+|. .++.||.+++..+.. .. ....+.....
T Consensus 64 ------------------------------~~~~~~~v~P~~~L~~q~~~~l~~~~~---~~--~~~~~~~~~~~~~~~~ 108 (206)
T d1oywa2 64 ------------------------------LNGLTVVVSPLISLMKDQVDQLQANGV---AA--ACLNSTQTREQQLEVM 108 (206)
T ss_dssp ------------------------------SSSEEEEECSCHHHHHHHHHHHHHTTC---CE--EEECTTSCHHHHHHHH
T ss_pred ------------------------------CCCCEEEECCCHHHHHHHHHHHHHHCC---CC--CCCCCCCCCCCCHHHH
T ss_conf ------------------------------267247862640666668999976356---65--3221111245205677
Q ss_pred CCCCCCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 90001798499914010201279999974567642115545775023344442100100012457888887887666888
Q 002565 426 DPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCG 505 (907)
Q Consensus 426 ~~~~l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~ 505 (907)
........+++++|...+...... .
T Consensus 109 ~~~~~~~~~i~~~t~~~~~~~~~~-------------------------------------------------------~ 133 (206)
T d1oywa2 109 TGCRTGQIRLLYIAPERLMLDNFL-------------------------------------------------------E 133 (206)
T ss_dssp HHHHHTCCSEEEECHHHHTSTTHH-------------------------------------------------------H
T ss_pred HHHHCCCCEEEEEECHHHHCHHHC-------------------------------------------------------C
T ss_conf 887628846999703011000102-------------------------------------------------------4
Q ss_pred CCCCCCCCEEEECCCCCCCCCCHH---H----HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 863234039998357656993108---9----999994002814897266754641356656775336
Q 002565 506 PLAKVGWFRVVLDEAQTIKNHRTQ---V----ARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 566 (907)
Q Consensus 506 ~L~~i~w~rVILDEAH~IKN~~s~---~----skA~~~L~a~~Rw~LTGTPiqN~l~DL~sll~FL~~ 566 (907)
......+..+|+||+|.+...... . ......+.....++||||+-..-.+|+...|.+-+|
T Consensus 134 ~~~~~~v~~lviDEaH~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~lSATl~~~v~~di~~~L~l~~p 201 (206)
T d1oywa2 134 HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDP 201 (206)
T ss_dssp HHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSC
T ss_pred CCHHHEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCC
T ss_conf 22100222430001256502266508999999999975899835999948997999999997699999
No 14
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=98.97 E-value=1.8e-08 Score=69.61 Aligned_cols=160 Identities=15% Similarity=0.227 Sum_probs=108.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 44667267999999999821036666685123178884589999999973100233102220342111256898888888
Q 002565 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (907)
Q Consensus 271 l~~~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (907)
+...|-+-|+.++.-+...-.... ..--+|+-|+|.|||.-++..+.....
T Consensus 52 lP~~lt~~Q~~~~~~i~~~~~~~~-~~~~LL~GdvGsGKT~V~~~a~~~~~~---------------------------- 102 (233)
T d2eyqa3 52 FPFETTPDQAQAINAVLSDMCQPL-AMDRLVCGDVGFGKTEVAMRAAFLAVD---------------------------- 102 (233)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHSSS-CCEEEEECCCCTTTHHHHHHHHHHHHT----------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCC-CCCEEEECCCCCCCHHHHHHHHHHHHH----------------------------
T ss_conf 011346048889999999985457-667089838887728999999999997----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHH-HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC-
Q ss_conf 67533223698889999877665533336889999739996824-5999999999769999980899996899888900-
Q 002565 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV- 428 (907)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-ll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~- 428 (907)
..+..++++|.. |..|+.+.|.+.++.- ..+|.++++....+...
T Consensus 103 --------------------------------~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~-~~~v~~l~~~~~~~~~~~ 149 (233)
T d2eyqa3 103 --------------------------------NHKQVAVLVPTTLLAQQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQ 149 (233)
T ss_dssp --------------------------------TTCEEEEECSSHHHHHHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHH
T ss_pred --------------------------------CCCCEEEECCHHHHHHHHHHHHHHHHHHC-CCEEEECCCCCCCHHHHH
T ss_conf --------------------------------68956997468876799999999987247-977976357653126999
Q ss_pred -----CCCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -----017984999140102012799999745676421155457750233444421001000124578888878876668
Q 002565 429 -----ELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYG 503 (907)
Q Consensus 429 -----~l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~ 503 (907)
.-++.+|||=|...+...++.
T Consensus 150 ~~~~~~~g~~~iviGths~l~~~~~f------------------------------------------------------ 175 (233)
T d2eyqa3 150 ILAEVAEGKIDILIGTHKLLQSDVKF------------------------------------------------------ 175 (233)
T ss_dssp HHHHHHTTCCSEEEECTHHHHSCCCC------------------------------------------------------
T ss_pred HHHHHHCCCCCEEEEEHHHHCCCCCC------------------------------------------------------
T ss_conf 99999679978897420233067765------------------------------------------------------
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHH-HCCCEEEEECCCCCCCHH
Q ss_conf 8886323403999835765699310899999940-028148972667546413
Q 002565 504 CGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSL-RAKRRWCLSGTPIQNSID 555 (907)
Q Consensus 504 ~~~L~~i~w~rVILDEAH~IKN~~s~~skA~~~L-~a~~Rw~LTGTPiqN~l~ 555 (907)
-.+..||+||-|... .+.-..++.. .....+.+|+|||.-++.
T Consensus 176 ------~~LgLiIiDEeH~fg---~kQ~~~l~~~~~~~~~l~~SATPiprtl~ 219 (233)
T d2eyqa3 176 ------KDLGLLIVDEEHRFG---VRHKERIKAMRANVDILTLTATPIPRTLN 219 (233)
T ss_dssp ------SSEEEEEEESGGGSC---HHHHHHHHHHHTTSEEEEEESSCCCHHHH
T ss_pred ------CCCCCEEEECHHHHH---HHHHHHHHHHCCCCCEEEEECCHHHHHHH
T ss_conf ------554630222312332---57899999618899889996551099999
No 15
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=98.72 E-value=1.2e-07 Score=64.21 Aligned_cols=164 Identities=20% Similarity=0.176 Sum_probs=99.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67267999999999821036666685123178884589999999973100233102220342111256898888888675
Q 002565 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (907)
Q Consensus 274 ~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (907)
.+.|.|..++..++.... ..|+.-..|.|||+..+..+......
T Consensus 26 ~pt~iQ~~~ip~~l~g~~------d~iv~a~TGsGKT~~~~l~~~~~~~~------------------------------ 69 (208)
T d1hv8a1 26 KPTDIQMKVIPLFLNDEY------NIVAQARTGSGKTASFAIPLIELVNE------------------------------ 69 (208)
T ss_dssp SCCHHHHHHHHHHHHTCS------EEEEECCSSSSHHHHHHHHHHHHSCS------------------------------
T ss_pred CCCHHHHHHHHHHHCCCC------CEEEECHHCCCCCCEEECCCCCCCCC------------------------------
T ss_conf 999999999999984999------74644100344440020333211112------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHH-HHHHHHHHHHHHCCCCCCEEEEEEECCCCCC-CCCCCC
Q ss_conf 33223698889999877665533336889999739996824-5999999999769999980899996899888-900017
Q 002565 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVELA 431 (907)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-ll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~-~~~~l~ 431 (907)
......||+||.. ++.|+.+.+.+..... ..++..++|..... ....+.
T Consensus 70 ----------------------------~~~~~~lil~pt~~l~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~l~ 120 (208)
T d1hv8a1 70 ----------------------------NNGIEAIILTPTRELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKALK 120 (208)
T ss_dssp ----------------------------SSSCCEEEECSCHHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHHH
T ss_pred ----------------------------CCCCCEEEEEECCCCCHHHHHHHHHHCCCC-CEEEEEEECCCCHHHHHHHCC
T ss_conf ----------------------------467506998403332203345566650367-707998528978699998608
Q ss_pred CCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98499914010201279999974567642115545775023344442100100012457888887887666888863234
Q 002565 432 KYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVG 511 (907)
Q Consensus 432 ~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i~ 511 (907)
..||+|+|-+.+..-+... .+.--.
T Consensus 121 ~~~IlV~TP~~l~~~l~~~-------------------------------------------------------~~~~~~ 145 (208)
T d1hv8a1 121 NANIVVGTPGRILDHINRG-------------------------------------------------------TLNLKN 145 (208)
T ss_dssp TCSEEEECHHHHHHHHHTT-------------------------------------------------------CSCTTS
T ss_pred CCCEEEECHHHHHHHHHCC-------------------------------------------------------CCCCCC
T ss_conf 9999998869999999769-------------------------------------------------------977666
Q ss_pred CCEEEECCCCCCC--CCCHHHHHHHHHHHC-CCEEEEECCCCCCCHHHHH
Q ss_conf 0399983576569--931089999994002-8148972667546413566
Q 002565 512 WFRVVLDEAQTIK--NHRTQVARACCSLRA-KRRWCLSGTPIQNSIDDLY 558 (907)
Q Consensus 512 w~rVILDEAH~IK--N~~s~~skA~~~L~a-~~Rw~LTGTPiqN~l~DL~ 558 (907)
...+|+||||.+- +......+-+..+.. ...+++|+|. .+.+.++.
T Consensus 146 l~~lViDEad~l~~~~~~~~i~~I~~~~~~~~Q~i~~SAT~-~~~v~~~~ 194 (208)
T d1hv8a1 146 VKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATM-PREILNLA 194 (208)
T ss_dssp CCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSC-CHHHHHHH
T ss_pred CCEEEEECHHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCC-CHHHHHHH
T ss_conf 86999988487610887177999998589988599997027-98999999
No 16
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Probab=98.55 E-value=1.6e-06 Score=56.88 Aligned_cols=175 Identities=18% Similarity=0.178 Sum_probs=106.7
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66726799999999982103666668512317888458999999997310023310222034211125689888888867
Q 002565 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (907)
Q Consensus 273 ~~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (907)
..+.+.|..++..+++- +..++.-..|.|||+.-+.-++...... +. ..
T Consensus 42 ~~pt~iQ~~~ip~il~g-------~dvvi~a~TGsGKTlayllp~l~~l~~~-~~------------------~~----- 90 (238)
T d1wrba1 42 QRPTPIQKNAIPAILEH-------RDIMACAQTGSGKTAAFLIPIINHLVCQ-DL------------------NQ----- 90 (238)
T ss_dssp CSCCHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHHHHHHHHTT-CC-------------------------
T ss_pred CCCCHHHHHHHHHHHCC-------CCEEEECCCCCCCCEEEHHHHHHHHHHC-CC------------------CC-----
T ss_conf 98989999983664279-------9789987777775113199999999722-21------------------11-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHH-HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC--CC
Q ss_conf 533223698889999877665533336889999739996824-599999999976999998089999689988890--00
Q 002565 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDP--VE 429 (907)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-ll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~--~~ 429 (907)
+ . ......-..||+||.. ++.|..+++...... ..+++....|....... ..
T Consensus 91 ----~------------------~--~~~~~~~~alil~pt~el~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~ 145 (238)
T d1wrba1 91 ----Q------------------R--YSKTAYPKCLILAPTRELAIQILSESQKFSLN-TPLRSCVVYGGADTHSQIREV 145 (238)
T ss_dssp ----------------------------CCBCCSEEEECSSHHHHHHHHHHHHHHHTT-SSCCEEEECSSSCSHHHHHHH
T ss_pred ----C------------------C--CCCCCCCEEEEECCCHHHHCCHHEEEEECCCC-CCCEEEEEECCCHHHHHHHHC
T ss_conf ----2------------------4--56777836999535144301001011100357-882799994452035777640
Q ss_pred CCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 17984999140102012799999745676421155457750233444421001000124578888878876668888632
Q 002565 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (907)
Q Consensus 430 l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~ 509 (907)
....|+||+|.+.+..-+.. ..+.-
T Consensus 146 ~~~~~ivV~TP~~l~~~~~~-------------------------------------------------------~~~~l 170 (238)
T d1wrba1 146 QMGCHLLVATPGRLVDFIEK-------------------------------------------------------NKISL 170 (238)
T ss_dssp SSCCSEEEECHHHHHHHHHT-------------------------------------------------------TSBCC
T ss_pred CCCCCEEECCHHHHHHHHCC-------------------------------------------------------CCEEC
T ss_conf 36873440677887767726-------------------------------------------------------92652
Q ss_pred CCCCEEEECCCCCC--CCCCHHHHHHHHHHH-----CCCEEEEECCCCCCCHHHHHH
Q ss_conf 34039998357656--993108999999400-----281489726675464135665
Q 002565 510 VGWFRVVLDEAQTI--KNHRTQVARACCSLR-----AKRRWCLSGTPIQNSIDDLYS 559 (907)
Q Consensus 510 i~w~rVILDEAH~I--KN~~s~~skA~~~L~-----a~~Rw~LTGTPiqN~l~DL~s 559 (907)
..+..+|+|||+.+ .+......+.+..++ ....+++|+| +...+.+|-.
T Consensus 171 ~~v~~lViDEaD~ll~~~f~~~i~~Il~~~~~~~~~~~Q~il~SAT-~~~~v~~l~~ 226 (238)
T d1wrba1 171 EFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSAT-FPKEIQKLAA 226 (238)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESS-CCHHHHHHHH
T ss_pred CCCCEEEEEHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEEEE-CCHHHHHHHH
T ss_conf 6641244203445543213999999999843899899889999632-7989999999
No 17
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.51 E-value=3.8e-06 Score=54.48 Aligned_cols=165 Identities=17% Similarity=0.143 Sum_probs=99.1
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66726799999999982103666668512317888458999999997310023310222034211125689888888867
Q 002565 273 VNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAG 352 (907)
Q Consensus 273 ~~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (907)
..+.+.|..++.-++.. +-.++.-..|.|||+..+.-+......
T Consensus 31 ~~pt~iQ~~aip~il~g-------~dvl~~a~TGsGKT~a~~lp~i~~l~~----------------------------- 74 (212)
T d1qdea_ 31 EEPSAIQQRAIMPIIEG-------HDVLAQAQSGTGKTGTFSIAALQRIDT----------------------------- 74 (212)
T ss_dssp CSCCHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHHHHHHCCT-----------------------------
T ss_pred CCCCHHHHHHHHHHHCC-------CCEEEECCCCCCHHHHHHHHHHHHHHC-----------------------------
T ss_conf 99999999999999869-------987744565301004667666766503-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHH-HHHHHHHHHHHHCCCCCCEEEEEEECCC-CCCCCCCC
Q ss_conf 533223698889999877665533336889999739996824-5999999999769999980899996899-88890001
Q 002565 353 LDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGS-RTKDPVEL 430 (907)
Q Consensus 353 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-ll~qW~~Ei~k~~~~~~~l~Vlvy~G~~-r~~~~~~l 430 (907)
....-..||+||.. ++.|=...+....... ...+....+.. ...+...+
T Consensus 75 ----------------------------~~~~~~~lil~pt~el~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 125 (212)
T d1qdea_ 75 ----------------------------SVKAPQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGL 125 (212)
T ss_dssp ----------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECC----------C
T ss_pred ----------------------------CCCCCCEEEECCCHHHHHHHHHHHCCCCCCC-CCCEEEEEECCCHHHHHHHH
T ss_conf ----------------------------6778614897044888666665400122233-21113675326616799984
Q ss_pred CCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79849991401020127999997456764211554577502334444210010001245788888788766688886323
Q 002565 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (907)
Q Consensus 431 ~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i 510 (907)
...+++|+|.+.+....... .+.--
T Consensus 126 ~~~~IvI~TP~~l~~~~~~~-------------------------------------------------------~~~l~ 150 (212)
T d1qdea_ 126 RDAQIVVGTPGRVFDNIQRR-------------------------------------------------------RFRTD 150 (212)
T ss_dssp TTCSEEEECHHHHHHHHHTT-------------------------------------------------------SSCCT
T ss_pred CCCCEEEECCCCCCCCCCCC-------------------------------------------------------CEECC
T ss_conf 69919997997552223467-------------------------------------------------------35368
Q ss_pred CCCEEEECCCCCCCC--CCHHHHHHHHHHHC-CCEEEEECCCCCCCHHHHH
Q ss_conf 403999835765699--31089999994002-8148972667546413566
Q 002565 511 GWFRVVLDEAQTIKN--HRTQVARACCSLRA-KRRWCLSGTPIQNSIDDLY 558 (907)
Q Consensus 511 ~w~rVILDEAH~IKN--~~s~~skA~~~L~a-~~Rw~LTGTPiqN~l~DL~ 558 (907)
.-..+|+||||.+-+ ......+-+..+.. ...+++|+|- .+.+.++-
T Consensus 151 ~l~~lVlDEad~lld~~f~~~v~~I~~~~~~~~Q~vl~SAT~-~~~v~~l~ 200 (212)
T d1qdea_ 151 KIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATM-PNDVLEVT 200 (212)
T ss_dssp TCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSC-CHHHHHHH
T ss_pred CCEEEEEHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEEC-CHHHHHHH
T ss_conf 640775302445314443999999998589888699998618-98999999
No 18
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.51 E-value=1.8e-07 Score=63.08 Aligned_cols=62 Identities=21% Similarity=0.608 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC--CCCCCCCCCCCCCCC
Q ss_conf 46899999741014532344689999951234675233111211025999--989986433645755
Q 002565 704 RDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDD--NMCPAPRCKEQLGAD 768 (907)
Q Consensus 704 ~e~~~~ll~~le~~~~~C~iC~d~~e~pvit~C~H~fC~~Ci~~~~~~~~--~~CP~~~C~~~l~~~ 768 (907)
-+....+++.++ ....|+||.+.+.+|+.+.|||.||..||..++.... ..|| .|+..+...
T Consensus 8 ~~~~~~~~~~l~-~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP--~Cr~~~~~~ 71 (103)
T d1jm7a_ 8 VEEVQNVINAMQ-KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCP--LCKNDITKR 71 (103)
T ss_dssp HHHHHHHHHHHH-HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCT--TTSCCCCTT
T ss_pred HHHHHHHHHHCC-CCCCCCCCCCHHCCEEECCCCCCHHHHHHHHHHHHCCCCCCCC--CCCCCCCHH
T ss_conf 999999999663-5849972182318918837998641678999999779998096--988838755
No 19
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.49 E-value=1.9e-08 Score=69.44 Aligned_cols=50 Identities=28% Similarity=0.577 Sum_probs=43.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5323446899999512346752331112110259999899864336457552
Q 002565 718 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADV 769 (907)
Q Consensus 718 ~~~C~iC~d~~e~pvit~C~H~fC~~Ci~~~~~~~~~~CP~~~C~~~l~~~~ 769 (907)
...|+||.+++.+|+++.|||.||..||..++......|| .||.++....
T Consensus 23 ~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP--~Cr~p~~~~~ 72 (86)
T d1rmda2 23 SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCP--SCRYPCFPTD 72 (86)
T ss_dssp HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCT--TTCCBCCGGG
T ss_pred CCCCCCCCCCHHCCEECCCCCHHHHHHHHHHHHHCCCCCC--CCCCCCCHHH
T ss_conf 7599567844415552678876319999999964879070--3699799666
No 20
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.49 E-value=4.3e-06 Score=54.15 Aligned_cols=164 Identities=19% Similarity=0.161 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67267999999999821036666685123178884589999999973100233102220342111256898888888675
Q 002565 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (907)
Q Consensus 274 ~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (907)
.+.+.|..++..++.. +.-+++-..|.|||+..+.-+......
T Consensus 34 ~pt~iQ~~aip~il~g-------~dvl~~a~TGsGKTlayllp~l~~i~~------------------------------ 76 (218)
T d2g9na1 34 KPSAIQQRAILPCIKG-------YDVIAQAQSGTGKTATFAISILQQIEL------------------------------ 76 (218)
T ss_dssp SCCHHHHHHHHHHHHT-------CCEEEECCTTSSHHHHHHHHHHHHCCT------------------------------
T ss_pred CCCHHHHHHHHHHHCC-------CCEEEECCCCHHHHHHHHHHHHHEECC------------------------------
T ss_conf 9999999999999769-------988997256254455433102220003------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHH-HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC---CCC
Q ss_conf 33223698889999877665533336889999739996824-59999999997699999808999968998889---000
Q 002565 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKD---PVE 429 (907)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-ll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~---~~~ 429 (907)
.......||+||.. +..|=..++.++.... .+.+....+...... ...
T Consensus 77 ---------------------------~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 128 (218)
T d2g9na1 77 ---------------------------DLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQ 128 (218)
T ss_dssp ---------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHHTTT-TCCEEEECC--CCCSTTTSSS
T ss_pred ---------------------------CCCCCCEEEECCCCHHHHHHHHHHHHHCCCC-CEEEEEEECCCCHHHHHHHHH
T ss_conf ---------------------------6667518998245112356777776512443-216876302453067788876
Q ss_pred CCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 17984999140102012799999745676421155457750233444421001000124578888878876668888632
Q 002565 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (907)
Q Consensus 430 l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~ 509 (907)
....++||+|-+.+...+... .+.-
T Consensus 129 ~~~~~IvV~TP~rl~~~l~~~-------------------------------------------------------~~~~ 153 (218)
T d2g9na1 129 MEAPHIIVGTPGRVFDMLNRR-------------------------------------------------------YLSP 153 (218)
T ss_dssp SCCCSEEEECHHHHHHHHHTT-------------------------------------------------------SSCS
T ss_pred CCCCEEEEECCHHHHHHHHCC-------------------------------------------------------CCCC
T ss_conf 488779996781577788628-------------------------------------------------------8324
Q ss_pred CCCCEEEECCCCCCCC--CCHHHHHHHHHHHCC-CEEEEECCCCCCCHHHHH
Q ss_conf 3403999835765699--310899999940028-148972667546413566
Q 002565 510 VGWFRVVLDEAQTIKN--HRTQVARACCSLRAK-RRWCLSGTPIQNSIDDLY 558 (907)
Q Consensus 510 i~w~rVILDEAH~IKN--~~s~~skA~~~L~a~-~Rw~LTGTPiqN~l~DL~ 558 (907)
-....+|+||||.+-+ ......+.+..+..+ .++++|+|- .+.+.++-
T Consensus 154 ~~l~~lVlDEaD~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~-~~~v~~~~ 204 (218)
T d2g9na1 154 KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATM-PSDVLEVT 204 (218)
T ss_dssp TTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESCC-CHHHHHHH
T ss_pred CCCEEEEEEECCHHHCCCHHHHHHHHHHHCCCCCEEEEEEECC-CHHHHHHH
T ss_conf 6534898640210212760899999999689998699998059-98999999
No 21
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.47 E-value=7.4e-08 Score=65.62 Aligned_cols=58 Identities=21% Similarity=0.687 Sum_probs=47.7
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 997410145323446899999512346752331112110259999899864336457552
Q 002565 710 LLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADV 769 (907)
Q Consensus 710 ll~~le~~~~~C~iC~d~~e~pvit~C~H~fC~~Ci~~~~~~~~~~CP~~~C~~~l~~~~ 769 (907)
+..........|+||.+.+.++++++|||.||..|+..++......|| .||..+....
T Consensus 15 ~~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP--~Cr~~i~~~~ 72 (79)
T d1fbva4 15 LYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCP--FCRCEIKGTE 72 (79)
T ss_dssp HHHTTSCCTTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCT--TTCCCCCCCC
T ss_pred HHHHCCCCCCCCCCCCCCCCCEEEECCCCEEEHHHHHHHHHHCCCCCC--CCCCCCCCCC
T ss_conf 988149998999358976899699589993529999999997858189--9795864776
No 22
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.43 E-value=4.2e-06 Score=54.21 Aligned_cols=165 Identities=18% Similarity=0.164 Sum_probs=98.3
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67267999999999821036666685123178884589999999973100233102220342111256898888888675
Q 002565 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (907)
Q Consensus 274 ~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (907)
.+.|.|..++..+++. +..|+.-..|.|||+..+.-+......
T Consensus 23 ~pt~iQ~~aip~il~g-------~dvl~~A~TGsGKTla~~lp~l~~~~~------------------------------ 65 (207)
T d1t6na_ 23 HPSEVQHECIPQAILG-------MDVLCQAKSGMGKTAVFVLATLQQLEP------------------------------ 65 (207)
T ss_dssp CCCHHHHHHHHHHHTT-------CCEEEECCTTSCHHHHHHHHHHHHCCC------------------------------
T ss_pred CCCHHHHHHHHHHHCC-------CCEEEEECCCCCCCCCCCCCEEEEECC------------------------------
T ss_conf 9999999999999849-------985777223332120013440321024------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHH-HHHHHHHHHHHHCCCCCCEEEEEEECCCCCC-CCCC--
Q ss_conf 33223698889999877665533336889999739996824-5999999999769999980899996899888-9000--
Q 002565 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTK-DPVE-- 429 (907)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-ll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~-~~~~-- 429 (907)
.......||+||.. +..|..+.+..+......+++.+..|..... ....
T Consensus 66 ---------------------------~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 118 (207)
T d1t6na_ 66 ---------------------------VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK 118 (207)
T ss_dssp ---------------------------CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH
T ss_pred ---------------------------CCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH
T ss_conf ---------------------------67786289985122036789999999984388751678845654889999987
Q ss_pred CCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 17984999140102012799999745676421155457750233444421001000124578888878876668888632
Q 002565 430 LAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAK 509 (907)
Q Consensus 430 l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~ 509 (907)
....|++|+|.+.+...+.... -.|..
T Consensus 119 ~~~~~ilI~TP~rl~~~~~~~~-----------------------------------------------------~~l~~ 145 (207)
T d1t6na_ 119 KNCPHIVVGTPGRILALARNKS-----------------------------------------------------LNLKH 145 (207)
T ss_dssp HSCCSEEEECHHHHHHHHHTTS-----------------------------------------------------SCCTT
T ss_pred HCCCCEEEECCCHHHHHCCCCC-----------------------------------------------------EECCC
T ss_conf 3689989908546432025882-----------------------------------------------------55430
Q ss_pred CCCCEEEECCCCCCCCC---CHHHHHHHHHHHC-CCEEEEECCCCCCCHHHHH
Q ss_conf 34039998357656993---1089999994002-8148972667546413566
Q 002565 510 VGWFRVVLDEAQTIKNH---RTQVARACCSLRA-KRRWCLSGTPIQNSIDDLY 558 (907)
Q Consensus 510 i~w~rVILDEAH~IKN~---~s~~skA~~~L~a-~~Rw~LTGTPiqN~l~DL~ 558 (907)
-..+|+||||.+-.. .....+....+.. ...+++|+|- .+.+.++.
T Consensus 146 --l~~lVlDEaD~ll~~~~~~~~i~~I~~~~~~~~Q~il~SAT~-~~~v~~l~ 195 (207)
T d1t6na_ 146 --IKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL-SKEIRPVC 195 (207)
T ss_dssp --CCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCC-CTTTHHHH
T ss_pred --CCEEEHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEEC-CHHHHHHH
T ss_conf --303402344445413785999999997488988799994008-88999999
No 23
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=98.41 E-value=1.8e-08 Score=69.67 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 64469999999997531058764122201248889875457899889962999914333399999999758981999972
Q 002565 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (907)
Q Consensus 805 ~SsKi~aLlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVIVFSQft~~LdiLe~~L~~~gi~~~rldG 884 (907)
.++|+++|.++|+... ..|+||||++..+++.|...|... .++|
T Consensus 77 ~~~K~~~l~~ll~~~~-------------------------------~~k~lvf~~~~~~~~~l~~~l~~~-----~i~g 120 (200)
T d2fwra1 77 SKNKIRKLREILERHR-------------------------------KDKIIIFTRHNELVYRISKVFLIP-----AITH 120 (200)
T ss_dssp CSHHHHHHHHHHHHTS-------------------------------SSCBCCBCSCHHHHHHHHHHTTCC-----BCCS
T ss_pred CHHHHHHHHHHHHHCC-------------------------------CCCEEEEECCHHHHHHHHHHCCCC-----EEEC
T ss_conf 4889999999999677-------------------------------980799947599999987633855-----2557
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 69989999999972289996359
Q 002565 885 TMSLPARDRAVKDFNTDREVCSL 907 (907)
Q Consensus 885 sms~~~R~~~I~~F~~dp~v~VL 907 (907)
.++..+|+.++++|+++ +++||
T Consensus 121 ~~~~~~R~~~l~~F~~~-~~~vL 142 (200)
T d2fwra1 121 RTSREEREEILEGFRTG-RFRAI 142 (200)
T ss_dssp SSCSHHHHTHHHHHHHS-SCSBC
T ss_pred CCCHHHHHHHHHHHHCC-CEEEE
T ss_conf 99999999999886348-70354
No 24
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=98.40 E-value=3.5e-07 Score=61.18 Aligned_cols=102 Identities=14% Similarity=0.110 Sum_probs=57.4
Q ss_pred CCEEEEECH-HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCC
Q ss_conf 973999682-4599999999976999998089999689988890001798499914010201279999974567642115
Q 002565 385 AGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNG 463 (907)
Q Consensus 385 ~~tLIV~P~-sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~~l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~ 463 (907)
..+||++|. .|..||.+++..... ......+.+ ..-....++++|++.+......
T Consensus 39 ~~~lvi~Ptr~La~q~~~~l~~~~~---~~~~~~~~~-------~~~~~~~i~~~t~~~l~~~~~~-------------- 94 (305)
T d2bmfa2 39 LRTLILAPTRVVAAEMEEALRGLPI---RYQTPAIRA-------EHTGREIVDLMCHATFTMRLLS-------------- 94 (305)
T ss_dssp CCEEEEESSHHHHHHHHHHTTTSCC---BCCC---------------CCCSEEEEEHHHHHHHHTS--------------
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCC---CEEEEEEEE-------CCCCCCCCCCCCCHHHHHHHHC--------------
T ss_conf 9899982389999999999854875---211137850-------1257653013774899999845--------------
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHH---HCC
Q ss_conf 54577502334444210010001245788888788766688886323403999835765699310899999940---028
Q 002565 464 ETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSL---RAK 540 (907)
Q Consensus 464 e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i~w~rVILDEAH~IKN~~s~~skA~~~L---~a~ 540 (907)
...-..+..||+||+|.+-.........+..+ ...
T Consensus 95 ------------------------------------------~~~~~~~~~vViDE~H~~~~~~~~~~~~l~~~~~~~~~ 132 (305)
T d2bmfa2 95 ------------------------------------------PIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEMGEA 132 (305)
T ss_dssp ------------------------------------------SSCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSC
T ss_pred ------------------------------------------CCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCC
T ss_conf ------------------------------------------85315400898530111252057888999984166531
Q ss_pred CEEEEECCCCCC
Q ss_conf 148972667546
Q 002565 541 RRWCLSGTPIQN 552 (907)
Q Consensus 541 ~Rw~LTGTPiqN 552 (907)
..+++|+||...
T Consensus 133 ~~v~~SAT~~~~ 144 (305)
T d2bmfa2 133 AGIFMTATPPGS 144 (305)
T ss_dssp EEEEECSSCTTC
T ss_pred EEEEEECCCCCC
T ss_conf 389941578764
No 25
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.37 E-value=8.5e-06 Score=52.21 Aligned_cols=164 Identities=16% Similarity=0.162 Sum_probs=98.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67267999999999821036666685123178884589999999973100233102220342111256898888888675
Q 002565 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (907)
Q Consensus 274 ~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (907)
.+.+-|..++-.+++. +..|+.-..|.|||+..+.-++.....
T Consensus 25 ~pt~iQ~~aip~il~g-------~dvl~~a~TGsGKTlayllP~l~~~~~------------------------------ 67 (206)
T d1veca_ 25 KPSPIQEESIPIALSG-------RDILARAKNGTGKSGAYLIPLLERLDL------------------------------ 67 (206)
T ss_dssp SCCHHHHHHHHHHHTT-------CCEEEECCSSSTTHHHHHHHHHHHCCT------------------------------
T ss_pred CCCHHHHHHHHHHHCC-------CCEEEECCCCCCCCCCCCCCHHHCCCC------------------------------
T ss_conf 9999999999999869-------988744367400112124641320210------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHH-HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC-CC-C
Q ss_conf 33223698889999877665533336889999739996824-599999999976999998089999689988890-00-1
Q 002565 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VE-L 430 (907)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-ll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~-~~-l 430 (907)
....-..||+||.. +..|=.+++.++........+....|....... .. .
T Consensus 68 ---------------------------~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 120 (206)
T d1veca_ 68 ---------------------------KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD 120 (206)
T ss_dssp ---------------------------TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTT
T ss_pred ---------------------------CCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf ---------------------------25675249984030166899999998751156764212367740888999887
Q ss_pred CCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79849991401020127999997456764211554577502334444210010001245788888788766688886323
Q 002565 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (907)
Q Consensus 431 ~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i 510 (907)
...++||.|-+.+...+... . ..+..
T Consensus 121 ~~~~ivv~TPgrl~~~~~~~--------------------------------------~---------------~~~~~- 146 (206)
T d1veca_ 121 DTVHVVIATPGRILDLIKKG--------------------------------------V---------------AKVDH- 146 (206)
T ss_dssp SCCSEEEECHHHHHHHHHTT--------------------------------------C---------------SCCTT-
T ss_pred HCCCEEEECCCCCCCCCCCH--------------------------------------H---------------CCCCC-
T ss_conf 51670894796331123311--------------------------------------0---------------00155-
Q ss_pred CCCEEEECCCCCCCCC--CHHHHHHHHHHH-CCCEEEEECCCCCCCHHHH
Q ss_conf 4039998357656993--108999999400-2814897266754641356
Q 002565 511 GWFRVVLDEAQTIKNH--RTQVARACCSLR-AKRRWCLSGTPIQNSIDDL 557 (907)
Q Consensus 511 ~w~rVILDEAH~IKN~--~s~~skA~~~L~-a~~Rw~LTGTPiqN~l~DL 557 (907)
-..+|+||||.+-+. .....+.+..+. ....+++|+|- .+.+.++
T Consensus 147 -l~~lVlDEaD~ll~~~f~~~i~~I~~~~~~~~Q~~l~SAT~-~~~v~~l 194 (206)
T d1veca_ 147 -VQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATF-PLSVQKF 194 (206)
T ss_dssp -CCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCC-CHHHHHH
T ss_pred -CCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECC-CHHHHHH
T ss_conf -40699841420011222999999998689988799999449-9899999
No 26
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.32 E-value=1.1e-06 Score=57.89 Aligned_cols=71 Identities=14% Similarity=0.093 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 64469999999997531058764122201248889875457899889962999914333399999999758981999972
Q 002565 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (907)
Q Consensus 805 ~SsKi~aLlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVIVFSQft~~LdiLe~~L~~~gi~~~rldG 884 (907)
.+.|+++|.++|+... ..|+|||+.+..+.+.|...|...|+.+..++|
T Consensus 11 ~~~K~~~L~~ll~~~~-------------------------------~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg 59 (168)
T d1t5ia_ 11 DNEKNRKLFDLLDVLE-------------------------------FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHR 59 (168)
T ss_dssp GGGHHHHHHHHHHHSC-------------------------------CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECT
T ss_pred HHHHHHHHHHHHHHCC-------------------------------CCEEEEEEEEEECCHHHHHHHCCCCCCCCCCCC
T ss_conf 5999999999998389-------------------------------981999980344110133343012444321112
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 69989999999972289996359
Q 002565 885 TMSLPARDRAVKDFNTDREVCSL 907 (907)
Q Consensus 885 sms~~~R~~~I~~F~~dp~v~VL 907 (907)
+|+..+|..+++.|++ ++++||
T Consensus 60 ~~~~~~r~~~l~~F~~-g~~~iL 81 (168)
T d1t5ia_ 60 GMPQEERLSRYQQFKD-FQRRIL 81 (168)
T ss_dssp TSCHHHHHHHHHHHHT-TSCSEE
T ss_pred CCCHHHHHHHHHHHCC-CCCEEE
T ss_conf 2210222211221112-221144
No 27
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=98.30 E-value=1.2e-07 Score=64.13 Aligned_cols=53 Identities=15% Similarity=0.321 Sum_probs=44.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4532344689999951234675233111211025999989986433645755201
Q 002565 717 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVF 771 (907)
Q Consensus 717 ~~~~C~iC~d~~e~pvit~C~H~fC~~Ci~~~~~~~~~~CP~~~C~~~l~~~~~~ 771 (907)
....|+||.+.+.+||++.|||.||+.||..++......|| .|+..+....+.
T Consensus 7 ~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP--~~~~~l~~~~l~ 59 (78)
T d1t1ha_ 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCP--KSQETLLHAGLT 59 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCT--TTCCBCSSCCCE
T ss_pred CCCCCCCCCCHHHCCEECCCCCCCHHHHHHHHHHHCCCCCC--CCCCCCCCCCCC
T ss_conf 62799171812108337267774339999999998888788--655637756562
No 28
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.24 E-value=1e-07 Score=64.63 Aligned_cols=51 Identities=10% Similarity=0.081 Sum_probs=43.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 45323446899999512346752331112110259999899864336457552
Q 002565 717 SSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADV 769 (907)
Q Consensus 717 ~~~~C~iC~d~~e~pvit~C~H~fC~~Ci~~~~~~~~~~CP~~~C~~~l~~~~ 769 (907)
....|+||.+.+.+||++.|||.||+.||.+++......|| .|+..+..+.
T Consensus 6 ~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP--~c~~~l~~~~ 56 (80)
T d2c2la2 6 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNP--VTRSPLTQEQ 56 (80)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCT--TTCCCCCGGG
T ss_pred CCCCCCCCCCHHHHHCCCCCCCEECHHHHHHHHHCCCCCCC--CCCCCCCCCC
T ss_conf 00118583732340330588685638899999863776578--7566654235
No 29
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}
Probab=98.22 E-value=2.4e-05 Score=49.29 Aligned_cols=164 Identities=16% Similarity=0.151 Sum_probs=92.3
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67267999999999821036666685123178884589999999973100233102220342111256898888888675
Q 002565 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (907)
Q Consensus 274 ~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (907)
.+.+.|..++..+++- +..|+....|.|||+..+.-+......
T Consensus 23 ~pt~iQ~~aip~~l~G-------~dvii~a~TGSGKTlayllp~l~~~~~------------------------------ 65 (209)
T d1q0ua_ 23 KPTEIQERIIPGALRG-------ESMVGQSQTGTGKTHAYLLPIMEKIKP------------------------------ 65 (209)
T ss_dssp SCCHHHHHHHHHHHHT-------CCEEEECCSSHHHHHHHHHHHHHHCCT------------------------------
T ss_pred CCCHHHHHHHHHHHCC-------CCEEEECCCCCCCCEEEEEEECCCCCC------------------------------
T ss_conf 9999999999999879-------976866244421331444310012454------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHH----HHHHHHHHHHCCCCCCEEEEEEECCCCC-CC-C
Q ss_conf 3322369888999987766553333688999973999682459----9999999976999998089999689988-89-0
Q 002565 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVL----RQWARELEDKVPDKAALSVLIYHGGSRT-KD-P 427 (907)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sll----~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~-~~-~ 427 (907)
.......++++|...+ .++.....++........+....+.... .. .
T Consensus 66 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
T d1q0ua_ 66 ---------------------------ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE 118 (209)
T ss_dssp ---------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC
T ss_pred ---------------------------CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf ---------------------------44444422223333214778888876412233343211000256203677888
Q ss_pred CCCCCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00179849991401020127999997456764211554577502334444210010001245788888788766688886
Q 002565 428 VELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPL 507 (907)
Q Consensus 428 ~~l~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L 507 (907)
......+|+|+|.+.+..-.... ..
T Consensus 119 ~~~~~~~Ilv~TP~~l~~~~~~~-------------------------------------------------------~~ 143 (209)
T d1q0ua_ 119 KLNVQPHIVIGTPGRINDFIREQ-------------------------------------------------------AL 143 (209)
T ss_dssp CCSSCCSEEEECHHHHHHHHHTT-------------------------------------------------------CC
T ss_pred HHCCCCEEEEECCCHHHHHHHHH-------------------------------------------------------CC
T ss_conf 74667549983471012233210-------------------------------------------------------13
Q ss_pred CCCCCCEEEECCCCCCCCC--CHHHHHHHHHHHC-CCEEEEECCCCCCCHHHH
Q ss_conf 3234039998357656993--1089999994002-814897266754641356
Q 002565 508 AKVGWFRVVLDEAQTIKNH--RTQVARACCSLRA-KRRWCLSGTPIQNSIDDL 557 (907)
Q Consensus 508 ~~i~w~rVILDEAH~IKN~--~s~~skA~~~L~a-~~Rw~LTGTPiqN~l~DL 557 (907)
..-.-..+|+||||.+-+. .......+..+.. ...+++|+|- .+.+.++
T Consensus 144 ~~~~l~~lViDEad~ll~~~f~~~v~~I~~~~~~~~Q~il~SATl-~~~v~~l 195 (209)
T d1q0ua_ 144 DVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATI-PEKLKPF 195 (209)
T ss_dssp CGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCC-CGGGHHH
T ss_pred CCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCC-CHHHHHH
T ss_conf 445533899960230113140999999999789988799997219-9899999
No 30
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.21 E-value=1.1e-05 Score=51.60 Aligned_cols=163 Identities=17% Similarity=0.127 Sum_probs=98.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67267999999999821036666685123178884589999999973100233102220342111256898888888675
Q 002565 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (907)
Q Consensus 274 ~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (907)
.+.+.|..++-+++.. +-.+..-..|.|||+..+.-+......
T Consensus 39 ~pt~IQ~~aIp~il~g-------~dvi~~a~TGSGKTlayllPil~~l~~------------------------------ 81 (222)
T d2j0sa1 39 KPSAIQQRAIKQIIKG-------RDVIAQSQSGTGKTATFSISVLQCLDI------------------------------ 81 (222)
T ss_dssp SCCHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHHHHHTCCT------------------------------
T ss_pred CCCHHHHHHHHHHHCC-------CCEEEECCCCHHHHHHHCCCCCCCCCC------------------------------
T ss_conf 9999999999999879-------986997574341454404540110033------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHH-HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC-CC-C
Q ss_conf 33223698889999877665533336889999739996824-599999999976999998089999689988890-00-1
Q 002565 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIYHGGSRTKDP-VE-L 430 (907)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-ll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~-~~-l 430 (907)
....-..||+||.. +..|=.+++.++... ..+++..+.|+...... .. .
T Consensus 82 ---------------------------~~~~~~~lil~PtreLa~Qi~~~~~~l~~~-~~i~~~~~~g~~~~~~~~~~l~ 133 (222)
T d2j0sa1 82 ---------------------------QVRETQALILAPTRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRKLD 133 (222)
T ss_dssp ---------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTT-TTCCEEEECTTSCHHHHHHHHH
T ss_pred ---------------------------CCCCCEEEEECCHHHHHHHHHHHHHHHHCC-CCEEEEEEEECCCCHHHHHHHC
T ss_conf ---------------------------346742577555288889999999998475-6345888751121024678751
Q ss_pred CCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79849991401020127999997456764211554577502334444210010001245788888788766688886323
Q 002565 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (907)
Q Consensus 431 ~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i 510 (907)
...+|+|.|.+.+..-+... ...+..
T Consensus 134 ~~~~Ilv~TPgrl~~~~~~~-----------------------------------------------------~~~~~~- 159 (222)
T d2j0sa1 134 YGQHVVAGTPGRVFDMIRRR-----------------------------------------------------SLRTRA- 159 (222)
T ss_dssp HCCSEEEECHHHHHHHHHTT-----------------------------------------------------SSCCTT-
T ss_pred CCCEEEECCCCCHHHCCCCC-----------------------------------------------------CCCCCC-
T ss_conf 48738867987577612001-----------------------------------------------------034442-
Q ss_pred CCCEEEECCCCCCCCC--CHHHHHHHHHHHC-CCEEEEECCCCCCCHHHH
Q ss_conf 4039998357656993--1089999994002-814897266754641356
Q 002565 511 GWFRVVLDEAQTIKNH--RTQVARACCSLRA-KRRWCLSGTPIQNSIDDL 557 (907)
Q Consensus 511 ~w~rVILDEAH~IKN~--~s~~skA~~~L~a-~~Rw~LTGTPiqN~l~DL 557 (907)
-..+|+||||.+-+. .....+.+..+.. ...+++|+|- .+.+.+|
T Consensus 160 -l~~lVlDEaD~ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT~-~~~v~~l 207 (222)
T d2j0sa1 160 -IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL-PHEILEM 207 (222)
T ss_dssp -CCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCC-CHHHHTT
T ss_pred -CEEEEECCHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEEEC-CHHHHHH
T ss_conf -30355422467652573999999999689888799999728-8899999
No 31
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=98.16 E-value=2.3e-06 Score=55.92 Aligned_cols=75 Identities=21% Similarity=0.315 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 64469999999997531058764122201248889875457899889962999914333399999999758981999972
Q 002565 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (907)
Q Consensus 805 ~SsKi~aLlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVIVFSQft~~LdiLe~~L~~~gi~~~rldG 884 (907)
.++|+..|.++|..+..... +.|+||||++..+++.+...|.+.|+++..++|
T Consensus 141 ~~pK~~~l~~~l~~~~~~~~---------------------------~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g 193 (286)
T d1wp9a2 141 DHPKMDKLKEIIREQLQRKQ---------------------------NSKIIVFTNYRETAKKIVNELVKDGIKAKRFVG 193 (286)
T ss_dssp SCHHHHHHHHHHHHHHHHCT---------------------------TCCEEEECSCHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHCC---------------------------CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 88289999999999997189---------------------------984899967188679999999976996488605
Q ss_pred C--------CCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 6--------9989999999972289996359
Q 002565 885 T--------MSLPARDRAVKDFNTDREVCSL 907 (907)
Q Consensus 885 s--------ms~~~R~~~I~~F~~dp~v~VL 907 (907)
. |+..+|..+++.|+++ +++||
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~F~~g-~~~vL 223 (286)
T d1wp9a2 194 QASKENDRGLSQREQKLILDEFARG-EFNVL 223 (286)
T ss_dssp SSCC-------CCHHHHHHHHHHHT-SCSEE
T ss_pred CCCCCCCCHHCHHHHHHHHHHHHCC-CCCEE
T ss_conf 6643342010228899999998769-98299
No 32
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.16 E-value=2e-05 Score=49.82 Aligned_cols=164 Identities=14% Similarity=0.172 Sum_probs=94.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67267999999999821036666685123178884589999999973100233102220342111256898888888675
Q 002565 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGL 353 (907)
Q Consensus 274 ~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (907)
.+.+.|..++--+++- +..|+.-..|.|||+..+.-+......
T Consensus 23 ~pt~iQ~~aip~il~g-------~dvi~~a~tGsGKTlay~lp~i~~~~~------------------------------ 65 (206)
T d1s2ma1 23 KPSPIQEEAIPVAITG-------RDILARAKNGTGKTAAFVIPTLEKVKP------------------------------ 65 (206)
T ss_dssp SCCHHHHHHHHHHHHT-------CCEEEECCTTSCHHHHHHHHHHHHCCT------------------------------
T ss_pred CCCHHHHHHHHHHHCC-------CCEEEECCCCCHHHHHHCCCCCCCCCC------------------------------
T ss_conf 9999999999999869-------988986587621444430331100232------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHH-HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC--CC
Q ss_conf 332236988899998776655333368899997399968245-999999999769999980899996899888900--01
Q 002565 354 DKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASV-LRQWARELEDKVPDKAALSVLIYHGGSRTKDPV--EL 430 (907)
Q Consensus 354 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sl-l~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~--~l 430 (907)
.......++++|... ..+=........ ....+++...+|........ ..
T Consensus 66 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~l~ 117 (206)
T d1s2ma1 66 ---------------------------KLNKIQALIMVPTRELALQTSQVVRTLG-KHCGISCMVTTGGTNLRDDILRLN 117 (206)
T ss_dssp ---------------------------TSCSCCEEEECSSHHHHHHHHHHHHHHT-TTTTCCEEEECSSSCHHHHHHHTT
T ss_pred ---------------------------CCCCCCCEEECCCHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCHHHHHHHHC
T ss_conf ---------------------------2234432032351121133544333204-446706885237630146777752
Q ss_pred CCCCEEEECCHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79849991401020127999997456764211554577502334444210010001245788888788766688886323
Q 002565 431 AKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKV 510 (907)
Q Consensus 431 ~~~dVVItTY~~l~~e~~~~~~~~~~~~~~~~~e~~~~~~~fs~~~~~k~~~~~~kk~~~~~k~~~~~~~~~~~~~L~~i 510 (907)
...|++|+|.+.+..-+.... -.|..+
T Consensus 118 ~~~~Ili~TP~~l~~~l~~~~-----------------------------------------------------~~l~~l 144 (206)
T d1s2ma1 118 ETVHILVGTPGRVLDLASRKV-----------------------------------------------------ADLSDC 144 (206)
T ss_dssp SCCSEEEECHHHHHHHHHTTC-----------------------------------------------------SCCTTC
T ss_pred CCCEEEEECCCCCCCCCCCCE-----------------------------------------------------EECCCC
T ss_conf 565499989753333343210-----------------------------------------------------101222
Q ss_pred CCCEEEECCCCCCCCC--CHHHHHHHHHHH-CCCEEEEECCCCCCCHHHHH
Q ss_conf 4039998357656993--108999999400-28148972667546413566
Q 002565 511 GWFRVVLDEAQTIKNH--RTQVARACCSLR-AKRRWCLSGTPIQNSIDDLY 558 (907)
Q Consensus 511 ~w~rVILDEAH~IKN~--~s~~skA~~~L~-a~~Rw~LTGTPiqN~l~DL~ 558 (907)
..+|+||||.+-+. ......-...++ ....+++|+|- ...+.++-
T Consensus 145 --~~lV~DEaD~l~~~~f~~~v~~I~~~l~~~~Q~il~SATl-~~~v~~~~ 192 (206)
T d1s2ma1 145 --SLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATF-PLTVKEFM 192 (206)
T ss_dssp --CEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCC-CHHHHHHH
T ss_pred --EEEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC-CHHHHHHH
T ss_conf --0777622134430024779999998689888899998738-88999999
No 33
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.13 E-value=2.8e-06 Score=55.36 Aligned_cols=46 Identities=28% Similarity=0.657 Sum_probs=38.0
Q ss_pred CCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5323446899999512-34675233111211025999989986433645755
Q 002565 718 SAICCVCSDPPEDSVV-TMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 768 (907)
Q Consensus 718 ~~~C~iC~d~~e~pvi-t~C~H~fC~~Ci~~~~~~~~~~CP~~~C~~~l~~~ 768 (907)
...|+||.+.+.+|+. +.|||.||..||..++. ..|| .|+..+...
T Consensus 22 ~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP--~Cr~~~~~~ 68 (97)
T d1jm7b_ 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCP--VCYTPAWIQ 68 (97)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCS--SSCCBCSCS
T ss_pred CCCCCCCCCHHHCCCEECCCCCCHHHHHHHHHHH---CCCC--CCCCCCCHH
T ss_conf 2899258722112746588999302999999985---3666--227867655
No 34
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=98.06 E-value=1.2e-05 Score=51.28 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=49.9
Q ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 6299991433339999999975898199997269989999999972289996359
Q 002565 853 IKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREVCSL 907 (907)
Q Consensus 853 ~KVIVFSQft~~LdiLe~~L~~~gi~~~rldGsms~~~R~~~I~~F~~dp~v~VL 907 (907)
.++|||+....+.+.|...|...||....++|.|+..+|++++++|.++ +++||
T Consensus 32 ~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G-~~~vL 85 (174)
T d1c4oa2 32 ERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLG-HYDCL 85 (174)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTT-SCSEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEE
T ss_conf 8389998230379999999986597258986155418899999999779-86999
No 35
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.05 E-value=8e-06 Score=52.37 Aligned_cols=71 Identities=14% Similarity=0.244 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 64469999999997531058764122201248889875457899889962999914333399999999758981999972
Q 002565 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (907)
Q Consensus 805 ~SsKi~aLlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVIVFSQft~~LdiLe~~L~~~gi~~~rldG 884 (907)
...|+.+|.++|+.. . ..|+|||+.+..+.+.|...|...|+.+..++|
T Consensus 16 ~~~K~~~L~~ll~~~--~-----------------------------~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~ 64 (171)
T d1s2ma2 16 ERQKLHCLNTLFSKL--Q-----------------------------INQAIIFCNSTNRVELLAKKITDLGYSCYYSHA 64 (171)
T ss_dssp GGGHHHHHHHHHHHS--C-----------------------------CSEEEEECSSHHHHHHHHHHHHHHTCCEEEECT
T ss_pred HHHHHHHHHHHHHHC--C-----------------------------CCCEEEEEEEEEHHHHHHHHHHCCCCCCCCCCC
T ss_conf 899999999999848--9-----------------------------876599972241356767765013344333433
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 69989999999972289996359
Q 002565 885 TMSLPARDRAVKDFNTDREVCSL 907 (907)
Q Consensus 885 sms~~~R~~~I~~F~~dp~v~VL 907 (907)
.|+..+|..+++.|+++. +++|
T Consensus 65 ~~~~~~r~~~~~~f~~~~-~~il 86 (171)
T d1s2ma2 65 RMKQQERNKVFHEFRQGK-VRTL 86 (171)
T ss_dssp TSCHHHHHHHHHHHHTTS-SSEE
T ss_pred CCCHHHHHHHHHHCCCCC-CCCC
T ss_conf 321145665532113686-3110
No 36
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.04 E-value=1.3e-05 Score=51.08 Aligned_cols=71 Identities=14% Similarity=0.243 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 64469999999997531058764122201248889875457899889962999914333399999999758981999972
Q 002565 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (907)
Q Consensus 805 ~SsKi~aLlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVIVFSQft~~LdiLe~~L~~~gi~~~rldG 884 (907)
...|++.|.+++.... ..|+|||+.+..+.+.+...|...|+....++|
T Consensus 11 ~e~K~~~L~~ll~~~~-------------------------------~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~ 59 (162)
T d1fuka_ 11 EEYKYECLTDLYDSIS-------------------------------VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYS 59 (162)
T ss_dssp GGGHHHHHHHHHHHTT-------------------------------CSCEEEEESSHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CHHHHHHHHHHHHHCC-------------------------------CCCEEEEEEEECHHHHHHHHHHHCCCEEEEECC
T ss_conf 3789999999998489-------------------------------885899998870699999888654955999516
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 69989999999972289996359
Q 002565 885 TMSLPARDRAVKDFNTDREVCSL 907 (907)
Q Consensus 885 sms~~~R~~~I~~F~~dp~v~VL 907 (907)
.|+..+|..+++.|+.. +++||
T Consensus 60 ~~~~~~r~~~l~~f~~~-~~~iL 81 (162)
T d1fuka_ 60 DLPQQERDTIMKEFRSG-SSRIL 81 (162)
T ss_dssp TSCHHHHHHHHHHHHTT-SCSEE
T ss_pred CCCHHHHHHHHHHHHHC-CCCEE
T ss_conf 77523677899987640-36456
No 37
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.01 E-value=8.9e-06 Score=52.07 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 64469999999997531058764122201248889875457899889962999914333399999999758981999972
Q 002565 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (907)
Q Consensus 805 ~SsKi~aLlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVIVFSQft~~LdiLe~~L~~~gi~~~rldG 884 (907)
...|+.+|.++|+.. . ..|+|||+.+....+.|...|...|+++..++|
T Consensus 16 ~~~K~~~L~~ll~~~----~---------------------------~~~~lIF~~~~~~~~~l~~~l~~~~~~~~~~hg 64 (168)
T d2rb4a1 16 RKDKYQALCNIYGSI----T---------------------------IGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSG 64 (168)
T ss_dssp HHHHHHHHHHHHTTS----C---------------------------CSEEEEECSCHHHHHHHHHHHHTTTCCEEEECS
T ss_pred HHHHHHHHHHHHHHC----C---------------------------CCCEEEECCHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf 889999999999867----9---------------------------885799718889999999999864776210233
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 69989999999972289996359
Q 002565 885 TMSLPARDRAVKDFNTDREVCSL 907 (907)
Q Consensus 885 sms~~~R~~~I~~F~~dp~v~VL 907 (907)
.|+..+|..++++|++. .++||
T Consensus 65 ~~~~~~R~~~~~~F~~g-~~~il 86 (168)
T d2rb4a1 65 ELTVEQRASIIQRFRDG-KEKVL 86 (168)
T ss_dssp SCCHHHHHHHHHHHHTT-SCSEE
T ss_pred CHHHHHHHHHHHHHCCC-CEEEE
T ss_conf 11567778776331379-60034
No 38
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=97.91 E-value=2.5e-05 Score=49.19 Aligned_cols=72 Identities=15% Similarity=0.234 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 44699999999975310587641222012488898754578998899629999143333999999997589819999726
Q 002565 806 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 885 (907)
Q Consensus 806 SsKi~aLlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVIVFSQft~~LdiLe~~L~~~gi~~~rldGs 885 (907)
.+++..|+..+....+.+. ++|||+......+.+...|+..|+....++|.
T Consensus 14 ~~qvd~ll~~i~~~~~~~~-----------------------------~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~ 64 (181)
T d1t5la2 14 KGQIDDLIGEIRERVERNE-----------------------------RTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSE 64 (181)
T ss_dssp TTHHHHHHHHHHHHHHTTC-----------------------------EEEEECSSHHHHHHHHHHHHTTTCCEEEECSS
T ss_pred CCCHHHHHHHHHHHHHCCC-----------------------------EEEEEEEHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 8849999999999996298-----------------------------28999610346678888787679404674178
Q ss_pred CCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9989999999972289996359
Q 002565 886 MSLPARDRAVKDFNTDREVCSL 907 (907)
Q Consensus 886 ms~~~R~~~I~~F~~dp~v~VL 907 (907)
|+..+|..++++|++. +++||
T Consensus 65 ~~~~eR~~~l~~Fr~g-~~~vL 85 (181)
T d1t5la2 65 IKTLERIEIIRDLRLG-KYDVL 85 (181)
T ss_dssp CCHHHHHHHHHHHHHT-SCSEE
T ss_pred CCHHHHHHHHHHHHCC-CCCEE
T ss_conf 6388999999999789-98889
No 39
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=97.90 E-value=1.8e-05 Score=50.08 Aligned_cols=70 Identities=14% Similarity=0.276 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 64469999999997531058764122201248889875457899889962999914333399999999758981999972
Q 002565 805 ISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDG 884 (907)
Q Consensus 805 ~SsKi~aLlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVIVFSQft~~LdiLe~~L~~~gi~~~rldG 884 (907)
...|+.+|.++|+. . +.|+|||+.+..+.+.|...|+..|+....++|
T Consensus 13 ~~~K~~~L~~ll~~---~-----------------------------~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~ 60 (155)
T d1hv8a2 13 ENERFEALCRLLKN---K-----------------------------EFYGLVFCKTKRDTKELASMLRDIGFKAGAIHG 60 (155)
T ss_dssp GGGHHHHHHHHHCS---T-----------------------------TCCEEEECSSHHHHHHHHHHHHHTTCCEEEECS
T ss_pred HHHHHHHHHHHHCC---C-----------------------------CCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 39999999999726---9-----------------------------998999979448998887652334322223333
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 69989999999972289996359
Q 002565 885 TMSLPARDRAVKDFNTDREVCSL 907 (907)
Q Consensus 885 sms~~~R~~~I~~F~~dp~v~VL 907 (907)
.++..+|..++++|++.. ++||
T Consensus 61 ~~~~~~r~~~~~~f~~~~-~~il 82 (155)
T d1hv8a2 61 DLSQSQREKVIRLFKQKK-IRIL 82 (155)
T ss_dssp SSCHHHHHHHHHHHHTTS-SSEE
T ss_pred CCHHHHHHHHHHHHHCCC-CEEE
T ss_conf 100113456665541211-1255
No 40
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=97.80 E-value=2.2e-06 Score=56.08 Aligned_cols=49 Identities=16% Similarity=0.395 Sum_probs=41.8
Q ss_pred CCCCCCCCCCCCCCC-CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 234468999995123-4675233111211025999989986433645755201
Q 002565 720 ICCVCSDPPEDSVVT-MCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVF 771 (907)
Q Consensus 720 ~C~iC~d~~e~pvit-~C~H~fC~~Ci~~~~~~~~~~CP~~~C~~~l~~~~~~ 771 (907)
.|+||.+.+++||++ .|||+||+.||.+|+.. ...||+ |+.++..+.++
T Consensus 2 ~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~--c~~~l~~~dLi 51 (56)
T d2baya1 2 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPI--TNEPLSIEEIV 51 (56)
T ss_dssp CCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTT--TCCBCCGGGCE
T ss_pred CCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHH-CCCCCC--CCCCCCHHHCE
T ss_conf 993678568865745789984559999998760-367985--47818877536
No 41
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=97.78 E-value=5.7e-05 Score=46.85 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=14.1
Q ss_pred CEEEEECHHHHHH-HHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf 7399968245999-999999769999980899996899
Q 002565 386 GTLVVCPASVLRQ-WARELEDKVPDKAALSVLIYHGGS 422 (907)
Q Consensus 386 ~tLIV~P~sll~q-W~~Ei~k~~~~~~~l~Vlvy~G~~ 422 (907)
.+||-|+..-.-. +...+... ...+..|||..
T Consensus 32 ~~IIF~~t~~~~~~l~~~l~~~-----~~~~~~~h~~~ 64 (200)
T d1oywa3 32 SGIIYCNSRAKVEDTAARLQSK-----GISAAAYHAGL 64 (200)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTS
T ss_pred CEEEEEEEEHHHHHHHHHHCCC-----CCEEEEECCCC
T ss_conf 8899982231167764432447-----85357753887
No 42
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.77 E-value=3.7e-05 Score=48.02 Aligned_cols=69 Identities=17% Similarity=0.319 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 44699999999975310587641222012488898754578998899629999143333999999997589819999726
Q 002565 806 SSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGT 885 (907)
Q Consensus 806 SsKi~aLlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVIVFSQft~~LdiLe~~L~~~gi~~~rldGs 885 (907)
..|+.+|.+++.... ..|+|||+......+.+...|+..|+.+..++|.
T Consensus 19 ~~K~~~L~~ll~~~~-------------------------------~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~ 67 (168)
T d2j0sa2 19 EWKFDTLCDLYDTLT-------------------------------ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD 67 (168)
T ss_dssp THHHHHHHHHHHHHT-------------------------------SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTT
T ss_pred HHHHHHHHHHHHHCC-------------------------------CCCEEEEEEEHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 999999999998478-------------------------------7763999605888788887766304431333112
Q ss_pred CCHHHHHHHHHHHCCCCCCCC
Q ss_conf 998999999997228999635
Q 002565 886 MSLPARDRAVKDFNTDREVCS 906 (907)
Q Consensus 886 ms~~~R~~~I~~F~~dp~v~V 906 (907)
++..+|..+++.|+++. +++
T Consensus 68 ~~~~~r~~~~~~fk~g~-~~i 87 (168)
T d2j0sa2 68 MPQKERESIMKEFRSGA-SRV 87 (168)
T ss_dssp SCHHHHHHHHHHHHHTS-SCE
T ss_pred HHHHHHHHHHHHHHCCC-CCE
T ss_conf 25789999999986388-407
No 43
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.77 E-value=7.1e-06 Score=52.70 Aligned_cols=50 Identities=24% Similarity=0.613 Sum_probs=39.6
Q ss_pred CCCCCCCCCCC----C-CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 53234468999----9-9512346752331112110259999899864336457552
Q 002565 718 SAICCVCSDPP----E-DSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADV 769 (907)
Q Consensus 718 ~~~C~iC~d~~----e-~pvit~C~H~fC~~Ci~~~~~~~~~~CP~~~C~~~l~~~~ 769 (907)
+..|+||.+.. . ..+++.|||+||..||..++......|| .||..+....
T Consensus 3 d~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP--~CR~~i~~~~ 57 (65)
T d1g25a_ 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCP--ECGTPLRKSN 57 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCT--TTCCCCSSCC
T ss_pred CCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCC--CCCCCCCCCC
T ss_conf 899870882600399567984763727648899998570819799--9986813045
No 44
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}
Probab=97.76 E-value=4.8e-06 Score=53.82 Aligned_cols=49 Identities=31% Similarity=0.809 Sum_probs=39.6
Q ss_pred CCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 1453234468999995-123467523311121102599998998643364575
Q 002565 716 TSSAICCVCSDPPEDS-VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGA 767 (907)
Q Consensus 716 ~~~~~C~iC~d~~e~p-vit~C~H~fC~~Ci~~~~~~~~~~CP~~~C~~~l~~ 767 (907)
.....|+||.+.+.++ ++++|||.||..|+..++.. ...|| .||..+..
T Consensus 3 ~~~d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP--~CR~~i~~ 52 (68)
T d1chca_ 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCP--LCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTT--TTCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHH-CCCCC--CCCCCHHH
T ss_conf 9799994499396688388289991768999999982-99088--87816372
No 45
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.71 E-value=5.8e-06 Score=53.30 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=41.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4532344689999951234675-233111211025999989986433645755201
Q 002565 717 SSAICCVCSDPPEDSVVTMCGH-VFCYQCASEYITGDDNMCPAPRCKEQLGADVVF 771 (907)
Q Consensus 717 ~~~~C~iC~d~~e~pvit~C~H-~fC~~Ci~~~~~~~~~~CP~~~C~~~l~~~~~~ 771 (907)
....|+||.+.+.+||++.|+| .||+.||..++.. ...||+ |+.++..+.+.
T Consensus 21 ~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~-~~~~P~--~~~~l~~~~L~ 73 (98)
T d1wgma_ 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPF--NRSPLTMDQIR 73 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTT--TCSBCCTTTSE
T ss_pred HHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH-CCCCCC--CCCCCCCHHHC
T ss_conf 774886734688777762355320149999999870-687665--55666401120
No 46
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.67 E-value=1.2e-05 Score=51.19 Aligned_cols=45 Identities=20% Similarity=0.482 Sum_probs=37.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 532344689999951234675233111211025999989986433645755
Q 002565 718 SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 768 (907)
Q Consensus 718 ~~~C~iC~d~~e~pvit~C~H~fC~~Ci~~~~~~~~~~CP~~~C~~~l~~~ 768 (907)
..+|+||.+...+|++++|||+||..|+.. ....|| .||..+...
T Consensus 6 ~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~----~~~~CP--~Cr~~~~~~ 50 (56)
T d1bora_ 6 FLRCQQCQAEAKCPKLLPCLHTLCSGCLEA----SGMQCP--ICQAPWPLG 50 (56)
T ss_dssp CSSCSSSCSSCBCCSCSTTSCCSBTTTCSS----SSSSCS--SCCSSSSCC
T ss_pred CCCCCCCCCCCCCCEEECCCCHHHHHHHHC----CCCCCC--CCCCCCCCC
T ss_conf 889840294158978901777785998872----979684--979966699
No 47
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.58 E-value=1.7e-05 Score=50.22 Aligned_cols=48 Identities=27% Similarity=0.659 Sum_probs=38.8
Q ss_pred CCCCCCCCCCCC----CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 323446899999----51234675233111211025999989986433645755
Q 002565 719 AICCVCSDPPED----SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGAD 768 (907)
Q Consensus 719 ~~C~iC~d~~e~----pvit~C~H~fC~~Ci~~~~~~~~~~CP~~~C~~~l~~~ 768 (907)
.+|+||.+..+. +.++.|||.||..|+..++......|| .||..+..+
T Consensus 1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP--~CR~~~~~d 52 (52)
T d1ur6b_ 1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCP--ACRKPYPED 52 (52)
T ss_dssp CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCT--TTCCBCSCC
T ss_pred CCCCCCCHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCC--CCCCCCCCC
T ss_conf 9995878235189825986699770455899999966489898--657948899
No 48
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.43 E-value=1.8e-05 Score=50.12 Aligned_cols=50 Identities=24% Similarity=0.555 Sum_probs=37.1
Q ss_pred CCCCCCCCCCCCCC------------------CCCCCCCCCCCHHHHHHHCCCC----CCCCCCCCCCCCCCCC
Q ss_conf 45323446899999------------------5123467523311121102599----9989986433645755
Q 002565 717 SSAICCVCSDPPED------------------SVVTMCGHVFCYQCASEYITGD----DNMCPAPRCKEQLGAD 768 (907)
Q Consensus 717 ~~~~C~iC~d~~e~------------------pvit~C~H~fC~~Ci~~~~~~~----~~~CP~~~C~~~l~~~ 768 (907)
.+.+|.||.+++.. ..++.|+|+||..||.+|+... ...|| .||..+...
T Consensus 24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP--~CR~~~~~~ 95 (114)
T d1v87a_ 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP--SCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCT--TTCCBSSSC
T ss_pred CCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCC--CCCCHHCCC
T ss_conf 565345301000134443354333454554346879999905699999999966757897665--501220667
No 49
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=97.41 E-value=5.8e-05 Score=46.77 Aligned_cols=46 Identities=28% Similarity=0.745 Sum_probs=36.2
Q ss_pred CCCCCCCCCCCCCC---C-CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 45323446899999---5-1234675233111211025999989986433645
Q 002565 717 SSAICCVCSDPPED---S-VVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQL 765 (907)
Q Consensus 717 ~~~~C~iC~d~~e~---p-vit~C~H~fC~~Ci~~~~~~~~~~CP~~~C~~~l 765 (907)
++.+|+||++..+. . +++.|+|.||..|+..++.. ...|| .||..+
T Consensus 4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP--~CR~~i 53 (55)
T d1iyma_ 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCP--LCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCS--SSCCCS
T ss_pred CCCCCEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHH-CCCCC--CCCCEE
T ss_conf 999984979001079889990898981059999999984-99387--889784
No 50
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
Probab=97.09 E-value=0.0036 Score=35.13 Aligned_cols=45 Identities=22% Similarity=0.121 Sum_probs=33.4
Q ss_pred CCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHH
Q ss_conf 23403999835765699310899999940028148972667546413
Q 002565 509 KVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSID 555 (907)
Q Consensus 509 ~i~w~rVILDEAH~IKN~~s~~skA~~~L~a~~Rw~LTGTPiqN~l~ 555 (907)
...++.||+||+..+- .......+..+....+++|.|=|-|=..-
T Consensus 259 ~l~~d~lIIDEaSmv~--~~l~~~ll~~~~~~~~lILvGD~~QLppV 303 (359)
T d1w36d1 259 PLHLDVLVVDEASMID--LPMMSRLIDALPDHARVIFLGDRDQLASV 303 (359)
T ss_dssp CCSCSEEEECSGGGCB--HHHHHHHHHTCCTTCEEEEEECTTSGGGT
T ss_pred CCCCCEEEEHHHHCCC--HHHHHHHHHHHCCCCEEEEECCHHHCCCC
T ss_conf 6654134653321448--99999999872599989997772216687
No 51
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.77 E-value=0.0002 Score=43.30 Aligned_cols=49 Identities=27% Similarity=0.723 Sum_probs=36.3
Q ss_pred CCCCCCCCCCCCCC--C-CCCCCCCCCCCHHHHHHHCC-----CCC--CCCCCCCCCCC
Q ss_conf 14532344689999--9-51234675233111211025-----999--98998643364
Q 002565 716 TSSAICCVCSDPPE--D-SVVTMCGHVFCYQCASEYIT-----GDD--NMCPAPRCKEQ 764 (907)
Q Consensus 716 ~~~~~C~iC~d~~e--~-pvit~C~H~fC~~Ci~~~~~-----~~~--~~CP~~~C~~~ 764 (907)
....+|+||.+... + +.+..|+|.||..|+..|+. +.. -.||.+.|+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~~~ 61 (94)
T d1wima_ 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 98984931798360775577789999848817999999998517966558919998878
No 52
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.63 E-value=0.00054 Score=40.47 Aligned_cols=47 Identities=21% Similarity=0.609 Sum_probs=35.3
Q ss_pred CCCCCCCCCCCCCC------------------CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 45323446899999------------------512346752331112110259999899864336457
Q 002565 717 SSAICCVCSDPPED------------------SVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLG 766 (907)
Q Consensus 717 ~~~~C~iC~d~~e~------------------pvit~C~H~fC~~Ci~~~~~~~~~~CP~~~C~~~l~ 766 (907)
....|.||.++..+ ++++.|+|+|+..||..++.. ...|| .||....
T Consensus 20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP--~CR~~~~ 84 (88)
T d3dplr1 20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCP--LDNREWE 84 (88)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCS--SSCSBCC
T ss_pred CCCCCEECCCHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHH-CCCCC--CCCCCCC
T ss_conf 99828783602418654323333213355687287265474657999999987-99687--8897231
No 53
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=96.04 E-value=0.016 Score=30.88 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=64.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 44667267999999999821036666685123178884589999999973100233102220342111256898888888
Q 002565 271 LSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGN 350 (907)
Q Consensus 271 l~~~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (907)
+....++-|+.|.--|. .|.|.--..|=|||+.+...+ +...+
T Consensus 77 lG~RhyDVQLiGgi~L~---------~G~iaem~TGEGKTL~a~l~a-~l~al--------------------------- 119 (273)
T d1tf5a3 77 TGMFPFKVQLMGGVALH---------DGNIAEMKTGEGKTLTSTLPV-YLNAL--------------------------- 119 (273)
T ss_dssp HSCCCCHHHHHHHHHHH---------TTSEEECCTTSCHHHHHHHHH-HHHHT---------------------------
T ss_pred HCEEEEHHHHHHHHHHH---------HHHHEEECCCCCCHHHHHHHH-HHHHH---------------------------
T ss_conf 16477304789999987---------655302068875103999999-99996---------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHH----HHHHHHHHHHCCCCCCEEEEEEECCCCCCC
Q ss_conf 6753322369888999987766553333688999973999682459----999999997699999808999968998889
Q 002565 351 AGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVL----RQWARELEDKVPDKAALSVLIYHGGSRTKD 426 (907)
Q Consensus 351 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sll----~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~ 426 (907)
..+++-||...-.| .+|...+-+++. ++|-+.........
T Consensus 120 --------------------------------~g~~vhvvTvNdyLA~RDae~m~~iy~~lG----lsvg~~~~~~~~~~ 163 (273)
T d1tf5a3 120 --------------------------------TGKGVHVVTVNEYLASRDAEQMGKIFEFLG----LTVGLNLNSMSKDE 163 (273)
T ss_dssp --------------------------------TSSCEEEEESSHHHHHHHHHHHHHHHHHTT----CCEEECCTTSCHHH
T ss_pred --------------------------------CCCCCEEEECCCCCCCHHHHHHHHHHHHCC----CCCCCCCCCCCHHH
T ss_conf --------------------------------699856971573003312457767999829----87345655457777
Q ss_pred CCCCCCCCEEEECCHHHCCC
Q ss_conf 00017984999140102012
Q 002565 427 PVELAKYDVVLTTYSIVTNE 446 (907)
Q Consensus 427 ~~~l~~~dVVItTY~~l~~e 446 (907)
....=..||+-.|-+.+.-+
T Consensus 164 r~~~Y~~di~Ygt~~e~~fD 183 (273)
T d1tf5a3 164 KREAYAADITYSTNNELGFD 183 (273)
T ss_dssp HHHHHHSSEEEEEHHHHHHH
T ss_pred HHHHHHCCCEECCHHHHHHH
T ss_conf 77776078355025555444
No 54
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}
Probab=95.43 E-value=0.0026 Score=36.10 Aligned_cols=49 Identities=16% Similarity=0.445 Sum_probs=38.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-----CCCCCHHHHHHHCCC-CCCCCCCCCCCCCCC
Q ss_conf 145323446899999512346-----752331112110259-999899864336457
Q 002565 716 TSSAICCVCSDPPEDSVVTMC-----GHVFCYQCASEYITG-DDNMCPAPRCKEQLG 766 (907)
Q Consensus 716 ~~~~~C~iC~d~~e~pvit~C-----~H~fC~~Ci~~~~~~-~~~~CP~~~C~~~l~ 766 (907)
++...|.||.+..+.+.+.+| +|.|+..|+..++.. ....|| .|+..++
T Consensus 4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP--~Cr~~~~ 58 (60)
T d1vyxa_ 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQ--ICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCT--TTCCBCC
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCEECHHHHHHHHHHCCCCCCC--CCCCEEE
T ss_conf 889999238862777516731458977887389999997107898891--6697124
No 55
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=95.27 E-value=0.00042 Score=41.19 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=29.1
Q ss_pred CCEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC----C--CCCCCCEEEEC---CHHHCCC
Q ss_conf 9739996824599999999976999998089999689988890----0--01798499914---0102012
Q 002565 385 AGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDP----V--ELAKYDVVLTT---YSIVTNE 446 (907)
Q Consensus 385 ~~tLIV~P~sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~----~--~l~~~dVVItT---Y~~l~~e 446 (907)
.+.||-|.. ...++++..++.. . +||.-..... . .-+.++|+|.| |+.+..-
T Consensus 26 ~~~iif~~~---~~~~~~l~~~l~~--~-----~hg~~~~~~R~~~~~~f~~g~~~vLVaT~a~~~v~~rG 86 (248)
T d1gkub2 26 TGGIIYART---GEEAEEIYESLKN--K-----FRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRG 86 (248)
T ss_dssp SCEEEEESS---HHHHHHHHHTTTT--S-----SCEEECTTSSSHHHHHHHHTSCSEEEEECC------CC
T ss_pred CCEEEEECC---HHHHHHHHHHHHH--H-----CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHC
T ss_conf 798999898---7899999999987--3-----43789999999999999827985999966660246513
No 56
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=94.38 E-value=0.056 Score=27.39 Aligned_cols=102 Identities=17% Similarity=0.190 Sum_probs=64.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46672679999999998210366666851231788845899999999731002331022203421112568988888886
Q 002565 272 SVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA 351 (907)
Q Consensus 272 ~~~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (907)
...-++-|+.|..-|. .|-|.--..|=|||+.+...+ ++..+
T Consensus 95 GmRhyDVQLiGgi~l~---------~g~iaem~TGEGKTL~a~l~a-~l~al---------------------------- 136 (288)
T d1nkta3 95 DQRPFDVQVMGAAALH---------LGNVAEMKTGEGKTLTCVLPA-YLNAL---------------------------- 136 (288)
T ss_dssp SCCCCHHHHHHHHHHH---------TTEEEECCTTSCHHHHTHHHH-HHHHT----------------------------
T ss_pred CCEEEEEHHHHHHHHH---------HHHHHCCCCCCCHHHHHHHHH-HHHHH----------------------------
T ss_conf 5325540057778886---------311100367874009999999-99996----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHHH----HHHHHHHHHHCCCCCCEEEEEEECCCCCCCC
Q ss_conf 753322369888999987766553333688999973999682459----9999999976999998089999689988890
Q 002565 352 GLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVL----RQWARELEDKVPDKAALSVLIYHGGSRTKDP 427 (907)
Q Consensus 352 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sll----~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~ 427 (907)
..+++-||...-.| .+|...+-+++. ++|-+..........
T Consensus 137 -------------------------------~g~~vhvvTvNdyLA~RDa~~m~~~y~~lG----lsvg~~~~~~~~~~~ 181 (288)
T d1nkta3 137 -------------------------------AGNGVHIVTVNDYLAKRDSEWMGRVHRFLG----LQVGVILATMTPDER 181 (288)
T ss_dssp -------------------------------TTSCEEEEESSHHHHHHHHHHHHHHHHHTT----CCEEECCTTCCHHHH
T ss_pred -------------------------------CCCCEEEEECCCHHHHHHHHHHHHHHHHHC----CCCCCCCCCCCHHHH
T ss_conf -------------------------------599738972572330154888889999938----886766555776878
Q ss_pred CCCCCCCEEEECCHHHCCC
Q ss_conf 0017984999140102012
Q 002565 428 VELAKYDVVLTTYSIVTNE 446 (907)
Q Consensus 428 ~~l~~~dVVItTY~~l~~e 446 (907)
...-..||+-.|-..+.-+
T Consensus 182 ~~~Y~~di~Y~t~~e~gfD 200 (288)
T d1nkta3 182 RVAYNADITYGTNNEFGFD 200 (288)
T ss_dssp HHHHHSSEEEEEHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHH
T ss_conf 8886365411347777566
No 57
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=93.70 E-value=0.015 Score=31.10 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=25.4
Q ss_pred CCCEEEEECH-HHHHHHHHHHHHHCCCCCCEEEEEEECCCC
Q ss_conf 9973999682-459999999997699999808999968998
Q 002565 384 AAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSR 423 (907)
Q Consensus 384 ~~~tLIV~P~-sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r 423 (907)
.+++||.|.. .-......++.+. ..++..||+...
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~~-----Gi~a~~~Hggls 71 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVAL-----GINAVAYYRGLD 71 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHHC-----CCCEEEEECCCH
T ss_conf 998999879689999999999777-----987899758940
No 58
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=92.64 E-value=0.21 Score=23.61 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=39.0
Q ss_pred CCEEEEECH-HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCC------CCCCCCEEEECC
Q ss_conf 973999682-45999999999769999980899996899888900------017984999140
Q 002565 385 AGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPV------ELAKYDVVLTTY 440 (907)
Q Consensus 385 ~~tLIV~P~-sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~------~l~~~dVVItTY 440 (907)
+.+.+|||. .-+......+.+.++ ..++.+.||.-...... .-.++||+|.|-
T Consensus 32 gQvy~V~p~I~~~e~~~~~l~~~~p---~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~Tt 91 (211)
T d2eyqa5 32 GQVYYLYNDVENIQKAAERLAELVP---EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT 91 (211)
T ss_dssp CEEEEECCCSSCHHHHHHHHHHHCT---TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCC---CEEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEH
T ss_conf 9599997175212668888887477---33799997226888899999999829862688755
No 59
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=89.81 E-value=0.03 Score=29.18 Aligned_cols=51 Identities=18% Similarity=0.370 Sum_probs=26.5
Q ss_pred CEEEEECHH----------HHHHHHHHH-HHHCCCCCCEEEEEEECCCCCCCCC------CCCCCCEEEECC
Q ss_conf 739996824----------599999999-9769999980899996899888900------017984999140
Q 002565 386 GTLVVCPAS----------VLRQWAREL-EDKVPDKAALSVLIYHGGSRTKDPV------ELAKYDVVLTTY 440 (907)
Q Consensus 386 ~tLIV~P~s----------ll~qW~~Ei-~k~~~~~~~l~Vlvy~G~~r~~~~~------~l~~~dVVItTY 440 (907)
.+.||||.- +.. -...+ +.+++ .+++.++||.-...... .-.+++|+|.|-
T Consensus 31 QvyvVcP~Ieese~~~~~~~~e-~~~~l~~~~~p---~~~v~~lHG~m~~~eke~~m~~F~~g~~~iLVaTt 98 (206)
T d1gm5a4 31 QAFIVYPLIEESDKLNVKSAVE-MYEYLSKEVFP---EFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT 98 (206)
T ss_dssp CBCCBCCCC--------CHHHH-HHHSGGGSCC------CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS
T ss_pred CEEEEEEEECCCCCCCCHHHHH-HHHHHHHHCCC---CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEH
T ss_conf 8899975144553211013678-99999985089---97288986036599999999999779878999702
No 60
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=87.59 E-value=0.15 Score=24.66 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=30.8
Q ss_pred CCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCHHHCC
Q ss_conf 99739996824599999999976999998089999689988890001798499914010201
Q 002565 384 AAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTN 445 (907)
Q Consensus 384 ~~~tLIV~P~sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~~l~~~dVVItTY~~l~~ 445 (907)
.+.+||.|+..---.+..+.-+.. ...+..||+........ -...+++++| +.+.+
T Consensus 35 ~~k~IVFc~t~~~ae~la~~L~~~----G~~~~~~H~~~~~~~~~-~~~~~vlvaT-d~~~~ 90 (138)
T d1jr6a_ 35 GGRHLIFCHSKKKCDELAAKLVAL----GINAVAYYRGLDVSVIP-TNGDVVVVAT-DALMT 90 (138)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHH----TCEEEEECTTCCSCCCT-TSSCEEEEES-SSSCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHCC----CCCHHHHHCCCHHHHHH-HHHCCEEEHH-HHHHH
T ss_conf 998999909589999999998352----63203342353054432-3311214106-88870
No 61
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=82.09 E-value=1 Score=19.22 Aligned_cols=21 Identities=19% Similarity=0.017 Sum_probs=10.5
Q ss_pred CCEEEEECHHHHHHHHHHHHH
Q ss_conf 973999682459999999997
Q 002565 385 AGTLVVCPASVLRQWARELED 405 (907)
Q Consensus 385 ~~tLIV~P~sll~qW~~Ei~k 405 (907)
.|+||.+..--.......+-+
T Consensus 35 rPVLIgT~SIe~SE~ls~~L~ 55 (175)
T d1tf5a4 35 QPVLVGTVAVETSELISKLLK 55 (175)
T ss_dssp CCEEEEESCHHHHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHH
T ss_conf 988999681999999999999
No 62
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=82.01 E-value=0.61 Score=20.64 Aligned_cols=51 Identities=14% Similarity=0.155 Sum_probs=29.0
Q ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHH-HCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 3403999835765699310899999940-02814897266754641356656
Q 002565 510 VGWFRVVLDEAQTIKNHRTQVARACCSL-RAKRRWCLSGTPIQNSIDDLYSY 560 (907)
Q Consensus 510 i~w~rVILDEAH~IKN~~s~~skA~~~L-~a~~Rw~LTGTPiqN~l~DL~sl 560 (907)
-.+..+|+||+|.+.+............ ....+++++.+-+.+-+.-|.+-
T Consensus 130 ~~~~iiiide~d~l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~~~l~sR 181 (252)
T d1sxje2 130 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQ 181 (252)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTT
T ss_pred CCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHCC
T ss_conf 8724999424333454311122100221356643000102111002544210
No 63
>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.59 E-value=0.96 Score=19.36 Aligned_cols=42 Identities=31% Similarity=0.854 Sum_probs=31.9
Q ss_pred CCCCCCCCCCCCCCCCCCCC----CCCCCHHHHHHHCC----CCCCCCCC
Q ss_conf 45323446899999512346----75233111211025----99998998
Q 002565 717 SSAICCVCSDPPEDSVVTMC----GHVFCYQCASEYIT----GDDNMCPA 758 (907)
Q Consensus 717 ~~~~C~iC~d~~e~pvit~C----~H~fC~~Ci~~~~~----~~~~~CP~ 758 (907)
...-|.+|.+.+|+...-.| +|.||.+|-.++|. +.+-.||.
T Consensus 7 ~~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sik~q~~~~evyCPS 56 (80)
T d2cs3a1 7 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 56 (80)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CCEEEEEEHHHHCCCCEEECCCCCCCCEECCCCHHHHHHCCCCCCEECCC
T ss_conf 86234211546237736757887677126234689998327997377899
No 64
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=69.60 E-value=2.2 Score=17.05 Aligned_cols=52 Identities=19% Similarity=0.151 Sum_probs=34.5
Q ss_pred CCCEEEEECH-HHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCC--CCCCCEEEECC
Q ss_conf 9973999682-459999999997699999808999968998889000--17984999140
Q 002565 384 AAGTLVVCPA-SVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE--LAKYDVVLTTY 440 (907)
Q Consensus 384 ~~~tLIV~P~-sll~qW~~Ei~k~~~~~~~l~Vlvy~G~~r~~~~~~--l~~~dVVItTY 440 (907)
.+.+||+||. .-+..-+..+.+. ..+|+++||......... -...++||+|-
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~-----g~~V~~l~~~~~~~e~~~~~~~~~~~~~~t~ 90 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKTFEREYPTIKQKKPDFILATD 90 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSSCC--------CCCSEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHC-----CCEEEEECCCCCHHHHHHHHCCCCCEEEEEC
T ss_conf 998999949999999999999866-----9809997686757677665157767899700
No 65
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=66.51 E-value=2.5 Score=16.65 Aligned_cols=48 Identities=10% Similarity=0.042 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 672679999999998210366666851231788845899999999731
Q 002565 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQR 321 (907)
Q Consensus 274 ~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~ 321 (907)
.++|||.....-+...........+-||.-..|.|||..+.+++..+.
T Consensus 2 ~~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 2 RWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp CCCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 987121999999999998599673798889998759999999998210
No 66
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=66.33 E-value=2.5 Score=16.62 Aligned_cols=70 Identities=26% Similarity=0.268 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 72679999999998210366666851231788845899999999731002331022203421112568988888886753
Q 002565 275 LLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLD 354 (907)
Q Consensus 275 L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (907)
.-.-|-+++.-+...-..+. +--+|.--.|.|||+.+-+++...
T Consensus 12 p~gDQP~aI~~l~~~l~~g~--~~q~l~GltGS~ka~~iA~l~~~~---------------------------------- 55 (413)
T d1t5la1 12 PQGDQPQAIAKLVDGLRRGV--KHQTLLGATGTGKTFTISNVIAQV---------------------------------- 55 (413)
T ss_dssp CCTTHHHHHHHHHHHHHHTC--SEEEEEECTTSCHHHHHHHHHHHH----------------------------------
T ss_pred CCCCCHHHHHHHHHHHHCCC--CCEEEECCCCCHHHHHHHHHHHHH----------------------------------
T ss_conf 99988899999999986599--858996778748999999999973----------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHH-HHHHHHHHHHHHCCC
Q ss_conf 3223698889999877665533336889999739996824-599999999976999
Q 002565 355 KVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPD 409 (907)
Q Consensus 355 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-ll~qW~~Ei~k~~~~ 409 (907)
.+++|||||.. ...||.+++..++++
T Consensus 56 -----------------------------~rp~LVVt~n~~~A~qL~~dL~~~l~~ 82 (413)
T d1t5la1 56 -----------------------------NKPTLVIAHNKTLAGQLYSELKEFFPH 82 (413)
T ss_dssp -----------------------------TCCEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred -----------------------------CCCEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf -----------------------------999899948999999999999987487
No 67
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=53.40 E-value=4.2 Score=15.19 Aligned_cols=10 Identities=40% Similarity=0.338 Sum_probs=3.4
Q ss_pred CCEEEEECCC
Q ss_conf 8148972667
Q 002565 540 KRRWCLSGTP 549 (907)
Q Consensus 540 ~~Rw~LTGTP 549 (907)
.-+=+|-||.
T Consensus 33 ~GqPVLVGT~ 42 (219)
T d1nkta4 33 KGQPVLIGTT 42 (219)
T ss_dssp TTCCEEEEES
T ss_pred CCCCEEEEEC
T ss_conf 6998899617
No 68
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}
Probab=40.69 E-value=6.6 Score=13.92 Aligned_cols=38 Identities=26% Similarity=0.258 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 67267999999999821036666685123178884589999999973
Q 002565 274 NLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQ 320 (907)
Q Consensus 274 ~L~~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~ 320 (907)
+|-|-|..+|.|- ..+ .++---.|.|||..++..+.++
T Consensus 1 ~L~~eQ~~av~~~----~~~-----~lI~g~aGTGKTt~l~~rv~~l 38 (306)
T d1uaaa1 1 RLNPGQQQAVEFV----TGP-----CLVLAGAGSGKTRVITNKIAHL 38 (306)
T ss_dssp CCCHHHHHHHHCC----SSE-----EEECCCTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCC----CCC-----EEEEEECCCCHHHHHHHHHHHH
T ss_conf 9698999998199----999-----8999628843899999999999
No 69
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=32.02 E-value=9 Score=13.04 Aligned_cols=74 Identities=23% Similarity=0.285 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67999999999821036666685123178884589999999973100233102220342111256898888888675332
Q 002565 277 KHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKV 356 (907)
Q Consensus 277 ~hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (907)
.=|-.++.-++.....+. +-..|.--.|.+|++.+.+++...
T Consensus 11 ~dqp~aI~~l~~~L~~g~--~~~~L~GlsgS~ka~~~A~l~~~~------------------------------------ 52 (408)
T d1c4oa1 11 GDQPKAIAGLVEALRDGE--RFVTLLGATGTGKTVTMAKVIEAL------------------------------------ 52 (408)
T ss_dssp TTHHHHHHHHHHHHHTTC--SEEEEEECTTSCHHHHHHHHHHHH------------------------------------
T ss_pred CCCHHHHHHHHHHHHCCC--CCEEEECCCCCHHHHHHHHHHHHH------------------------------------
T ss_conf 877999999999986699--737985688878999999999985------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHH-HHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 23698889999877665533336889999739996824-599999999976999998089999
Q 002565 357 KETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPAS-VLRQWARELEDKVPDKAALSVLIY 418 (907)
Q Consensus 357 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~s-ll~qW~~Ei~k~~~~~~~l~Vlvy 418 (907)
.+++|||||.. -..+|.+++..++++ -.|+.+
T Consensus 53 ---------------------------~rp~LvVt~~~~~A~~l~~dL~~~l~~---~~v~~f 85 (408)
T d1c4oa1 53 ---------------------------GRPALVLAPNKILAAQLAAEFRELFPE---NAVEYF 85 (408)
T ss_dssp ---------------------------TCCEEEEESSHHHHHHHHHHHHHHCTT---SEEEEC
T ss_pred ---------------------------CCCEEEEECCHHHHHHHHHHHHHHCCC---CCEEEC
T ss_conf ---------------------------999999918999999999999986476---645567
No 70
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.92 E-value=8.4 Score=13.24 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=23.9
Q ss_pred CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECC
Q ss_conf 632340399983576569931089999994002814897266
Q 002565 507 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGT 548 (907)
Q Consensus 507 L~~i~w~rVILDEAH~IKN~~s~~skA~~~L~a~~Rw~LTGT 548 (907)
.....+..+++||++...-..-........+...-+.++.++
T Consensus 101 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (189)
T d2i3ba1 101 SSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGT 142 (189)
T ss_dssp CCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEE
T ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 762189706861433330535999999999854686599961
No 71
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=24.04 E-value=12 Score=12.14 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHH
Q ss_conf 799999999982103666668512317888458999999997
Q 002565 278 HQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM 319 (907)
Q Consensus 278 hQk~gl~wml~~e~~~~~~~GGILADeMGLGKTiqaIAli~~ 319 (907)
|++.++.+...... ...|-+|.=-.|.|||..+=++...
T Consensus 34 ~~r~~~~~~~~~~~---~~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 34 WRRMQLQEPLRHEV---TPKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp HHTTSSCHHHHHHC---CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCC---CCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 87724578776678---9866999899998888999998621
No 72
>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}
Probab=22.14 E-value=13 Score=11.90 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCH-------------HHHHHHHHHHHHC
Q ss_conf 999999999753105876412220124888987545789988996299991433-------------3399999999758
Q 002565 809 IRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWT-------------RMLDLVENSLNQH 875 (907)
Q Consensus 809 i~aLlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVIVFSQft-------------~~LdiLe~~L~~~ 875 (907)
+...++.|..+...|. ++||||.-. ...+.....|++.
T Consensus 26 ~~~~Ie~l~~l~~~G~-----------------------------~Iii~TaR~~~~~~~~~~~~~~~~~~~T~~wL~~~ 76 (124)
T d1xpja_ 26 RLDVIEQLREYHQLGF-----------------------------EIVISTARNMRTYEGNVGKINIHTLPIITEWLDKH 76 (124)
T ss_dssp CHHHHHHHHHHHHTTC-----------------------------EEEEEECTTTTTTTTCHHHHHHHTHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCC-----------------------------EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 8999999999998799-----------------------------89999568754557757787888999999999982
Q ss_pred CCEEEEEEC
Q ss_conf 981999972
Q 002565 876 CIQYRRLDG 884 (907)
Q Consensus 876 gi~~~rldG 884 (907)
||+|-.|-=
T Consensus 77 gI~Yd~Li~ 85 (124)
T d1xpja_ 77 QVPYDEILV 85 (124)
T ss_dssp TCCCSEEEE
T ss_pred CCCCEEEEE
T ss_conf 998238887
Done!