BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002568
(906 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 531 bits (1369), Expect = e-151, Method: Compositional matrix adjust.
Identities = 303/776 (39%), Positives = 437/776 (56%), Gaps = 69/776 (8%)
Query: 40 SVGYGYSVRSVAVDSSLKSLTAGLGLIRSSSVYGPDIQSLNLFASFETKDRLRVRITDSK 99
S + Y V V+++ TA L + SS V+G ++ ++ L A ++T +R ++TD
Sbjct: 47 SKNHSYHVEGNLVNTN-AGFTARLKNLPSSPVFGSNVDNVLLTAEYQTSNRFHFKLTDQT 105
Query: 100 KQRWEIPQEIIPRQSYCTHCWLPENRLNSPVNHQTGPGNHFLSDPTSDLVFTLHTT--PF 157
R+E+P E + F + + L + + + PF
Sbjct: 106 NNRFEVPHEHV---------------------------QSFSGNAAASLTYQVEISRQPF 138
Query: 158 GFSVKRRSSGDILFDTSPETSHSDTFLVFKDQYIQLSSALPIERSHLYGIGEHTKKSFKL 217
V RRS+ +LFD+S L+F DQ++QLS+ LP +++YG+GEH + ++
Sbjct: 139 SIKVTRRSNNRVLFDSSIGP------LLFADQFLQLSTRLP--STNVYGLGEHVHQQYRH 190
Query: 218 TPN-DTLTLWNADLASANVDVNLYGSHPFYIDVRSPNGTTHGVLLLNSNGMDVVYT-GDR 275
N T ++N D NLYG+ F++ + +G + GV L+NSN M+VV
Sbjct: 191 DMNWKTWPIFNRDTTPNGNGTNLYGAQTFFLCLEDASGLSFGVFLMNSNAMEVVLQPAPA 250
Query: 276 ISYKVTGGIIDLYFFAGPSPDSVIQQYTELIGRPAPMPYWSFGFHQCRYGYENVSDLKAV 335
I+Y+ GGI+D Y F G +P+ V+Q+Y ELIGRPA YW+ GFH RY Y + +++ V
Sbjct: 251 ITYRTIGGILDFYVFLGNTPEQVVQEYLELIGRPALPSYWALGFHLSRYEYGTLDNMREV 310
Query: 336 VAGYAKAGIPLEVMWTDIDYMDGYKDFTLDPINFPVNSMQNFVNTLHQNGQRYVLILDPG 395
V A +P +V DIDYMD +DFT D ++F FVN LH NGQ+ V+I+DP
Sbjct: 311 VERNRAAQLPYDVQHADIDYMDERRDFTYDSVDF--KGFPEFVNELHNNGQKLVIIVDPA 368
Query: 396 ISVNET----YGTFIRGLKADIFIKR-DGV-PYLGEVWPGKVYYPDFVNPAAETFWKGEI 449
IS N + YG + RG I++ DGV P +GEVWPG+ +PD+ NP +W E
Sbjct: 369 ISNNSSSSKPYGPYDRGSDMKIWVNSSDGVTPLIGEVWPGQTVFPDYTNPNCAVWWTKEF 428
Query: 450 QLFRDILPMDGLWLDMNELSNFITSLPTPHST--LDDPPYKINNNGVRRPINN----KTV 503
+LF + + DG+W+DMNE+SNF+ + ST L++PP+ R ++ KT+
Sbjct: 429 ELFHNQVEFDGIWIDMNEVSNFVDGSVSGCSTNNLNNPPF------TPRILDGYLFCKTL 482
Query: 504 PATALHYRNLTEYNTHNLYGLLEAKATHAALINV-NGKRPFILSRSTFVGSGKYTAHWTG 562
A+ + +Y+ HNLYG A AT A V KR FIL+RSTF GSGK+ AHW G
Sbjct: 483 CMDAVQHWG-KQYDIHNLYGYSMAVATAEAAKTVFPNKRSFILTRSTFAGSGKFAAHWLG 541
Query: 563 DNAATWNDLAYSIPSILNFGLFGIPMVGADICGFSGDTTEELCRRWIQLGAFYPFARDHS 622
DN ATW+DL +SIP +L F LFGIPMVG DICGF+ DT EELCRRW+QLGAFYPF+R+H+
Sbjct: 542 DNTATWDDLRWSIPGVLEFNLFGIPMVGPDICGFALDTPEELCRRWMQLGAFYPFSRNHN 601
Query: 623 AIGTIRQELYFWDT---VAATARKVLGLRYRLLPYFYTLMYEAHMKGTAVARPMFFSFPQ 679
G Q+ + + ++R L +RY LLPY YTL + AH +G VARP+ F +
Sbjct: 602 GQGYKDQDPASFGADSLLLNSSRHYLNIRYTLLPYLYTLFFRAHSRGDTVARPLLHEFYE 661
Query: 680 DVKTYRIDTQFLIGKGVMVSPVLKSGAVSVDAYFPSGNWFDLFNYSNSVSLNSGKQ-ITL 738
D T+ + QFL G G++++PVL GA V AY P W+D Y + KQ + +
Sbjct: 662 DNSTWDVHQQFLWGPGLLITPVLDEGAEKVMAYVPDAVWYD---YETGSQVRWRKQKVEM 718
Query: 739 DAPPDHINVHVREGNILALQGEALTTKAARKTPFHLLVVVSSKETSTGEVFLDDGE 794
+ P D I +H+R G I Q TT A+RK P L++ + + + GE+F DDGE
Sbjct: 719 ELPGDKIGLHLRGGYIFPTQQPNTTTLASRKNPLGLIIALDENKEAKGELFWDDGE 774
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 531 bits (1369), Expect = e-151, Method: Compositional matrix adjust.
Identities = 303/776 (39%), Positives = 437/776 (56%), Gaps = 69/776 (8%)
Query: 40 SVGYGYSVRSVAVDSSLKSLTAGLGLIRSSSVYGPDIQSLNLFASFETKDRLRVRITDSK 99
S + Y V V+++ TA L + SS V+G ++ ++ L A ++T +R ++TD
Sbjct: 47 SKNHSYHVEGNLVNTN-AGFTARLKNLPSSPVFGSNVDNVLLTAEYQTSNRFHFKLTDQT 105
Query: 100 KQRWEIPQEIIPRQSYCTHCWLPENRLNSPVNHQTGPGNHFLSDPTSDLVFTLHTT--PF 157
R+E+P E + F + + L + + + PF
Sbjct: 106 NNRFEVPHEHV---------------------------QSFSGNAAASLTYQVEISRQPF 138
Query: 158 GFSVKRRSSGDILFDTSPETSHSDTFLVFKDQYIQLSSALPIERSHLYGIGEHTKKSFKL 217
V RRS+ +LFD+S L+F DQ++QLS+ LP +++YG+GEH + ++
Sbjct: 139 SIKVTRRSNNRVLFDSSIGP------LLFADQFLQLSTRLP--STNVYGLGEHVHQQYRH 190
Query: 218 TPN-DTLTLWNADLASANVDVNLYGSHPFYIDVRSPNGTTHGVLLLNSNGMDVVYT-GDR 275
N T ++N D NLYG+ F++ + +G + GV L+NSN M+VV
Sbjct: 191 DMNWKTWPIFNRDTTPNGNGTNLYGAQTFFLCLEDASGLSFGVFLMNSNAMEVVLQPAPA 250
Query: 276 ISYKVTGGIIDLYFFAGPSPDSVIQQYTELIGRPAPMPYWSFGFHQCRYGYENVSDLKAV 335
I+Y+ GGI+D Y F G +P+ V+Q+Y ELIGRPA YW+ GFH RY Y + +++ V
Sbjct: 251 ITYRTIGGILDFYVFLGNTPEQVVQEYLELIGRPALPSYWALGFHLSRYEYGTLDNMREV 310
Query: 336 VAGYAKAGIPLEVMWTDIDYMDGYKDFTLDPINFPVNSMQNFVNTLHQNGQRYVLILDPG 395
V A +P +V DIDYMD +DFT D ++F FVN LH NGQ+ V+I+DP
Sbjct: 311 VERNRAAQLPYDVQHADIDYMDERRDFTYDSVDF--KGFPEFVNELHNNGQKLVIIVDPA 368
Query: 396 ISVNET----YGTFIRGLKADIFIKR-DGV-PYLGEVWPGKVYYPDFVNPAAETFWKGEI 449
IS N + YG + RG I++ DGV P +GEVWPG+ +PD+ NP +W E
Sbjct: 369 ISNNSSSSKPYGPYDRGSDMKIWVNSSDGVTPLIGEVWPGQTVFPDYTNPNCAVWWTKEF 428
Query: 450 QLFRDILPMDGLWLDMNELSNFITSLPTPHST--LDDPPYKINNNGVRRPINN----KTV 503
+LF + + DG+W+DMNE+SNF+ + ST L++PP+ R ++ KT+
Sbjct: 429 ELFHNQVEFDGIWIDMNEVSNFVDGSVSGCSTNNLNNPPF------TPRILDGYLFCKTL 482
Query: 504 PATALHYRNLTEYNTHNLYGLLEAKATHAALINV-NGKRPFILSRSTFVGSGKYTAHWTG 562
A+ + +Y+ HNLYG A AT A V KR FIL+RSTF GSGK+ AHW G
Sbjct: 483 CMDAVQHWG-KQYDIHNLYGYSMAVATAEAAKTVFPNKRSFILTRSTFAGSGKFAAHWLG 541
Query: 563 DNAATWNDLAYSIPSILNFGLFGIPMVGADICGFSGDTTEELCRRWIQLGAFYPFARDHS 622
DN ATW+DL +SIP +L F LFGIPMVG DICGF+ DT EELCRRW+QLGAFYPF+R+H+
Sbjct: 542 DNTATWDDLRWSIPGVLEFNLFGIPMVGPDICGFALDTPEELCRRWMQLGAFYPFSRNHN 601
Query: 623 AIGTIRQELYFWDT---VAATARKVLGLRYRLLPYFYTLMYEAHMKGTAVARPMFFSFPQ 679
G Q+ + + ++R L +RY LLPY YTL + AH +G VARP+ F +
Sbjct: 602 GQGYKDQDPASFGADSLLLNSSRHYLNIRYTLLPYLYTLFFRAHSRGDTVARPLLHEFYE 661
Query: 680 DVKTYRIDTQFLIGKGVMVSPVLKSGAVSVDAYFPSGNWFDLFNYSNSVSLNSGKQ-ITL 738
D T+ + QFL G G++++PVL GA V AY P W+D Y + KQ + +
Sbjct: 662 DNSTWDVHQQFLWGPGLLITPVLDEGAEKVMAYVPDAVWYD---YETGSQVRWRKQKVEM 718
Query: 739 DAPPDHINVHVREGNILALQGEALTTKAARKTPFHLLVVVSSKETSTGEVFLDDGE 794
+ P D I +H+R G I Q TT A+RK P L++ + + + GE+F DDGE
Sbjct: 719 ELPGDKIGLHLRGGYIFPTQQPNTTTLASRKNPLGLIIALDENKEAKGELFWDDGE 774
>pdb|3LPO|A Chain A, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|B Chain B, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|C Chain C, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|D Chain D, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPP|A Chain A, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|B Chain B, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|C Chain C, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|D Chain D, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
Length = 898
Score = 507 bits (1305), Expect = e-143, Method: Compositional matrix adjust.
Identities = 304/781 (38%), Positives = 447/781 (57%), Gaps = 65/781 (8%)
Query: 30 YCIFVAAEKDSVGYGYSVRSVAVDSSLKSLTAGLGLIRSSSVYGPDIQSLNLFASFETKD 89
+C FV +GY+V+ + S + A L I S +++G DI S+ +T +
Sbjct: 72 WCFFVD------NHGYNVQDMTTTSI--GVEAKLNRIPSPTLFGNDINSVLFTTQNQTPN 123
Query: 90 RLRVRITDSKKQRWEIPQEIIPRQSYCTHCWLPENRLNSPVNHQTGPGNHFLSDPTSDLV 149
R R +ITD +R+E+P + V TGP +SD D+
Sbjct: 124 RFRFKITDPNNRRYEVPHQY--------------------VKEFTGPT---VSDTLYDV- 159
Query: 150 FTLHTTPFGFSVKRRSSGDILFDTSPETSHSDTFLVFKDQYIQLSSALPIERSHLYGIGE 209
+ PF V R+S+G LFDTS LV+ DQY+Q+S+ LP + ++YGIGE
Sbjct: 160 -KVAQNPFSIQVIRKSNGKTLFDTSIGP------LVYSDQYLQISARLPSD--YIYGIGE 210
Query: 210 HTKKSFKLTPN-DTLTLWNADLASANVDVNLYGSHPFYIDVRSPNGTTHGVLLLNSNGMD 268
K F+ + T ++ D + + NLYG F++ + +G + GV L+NSN M+
Sbjct: 211 QVHKRFRHDLSWKTWPIFTRDQLPGDNNNNLYGHQTFFMCIEDTSGKSFGVFLMNSNAME 270
Query: 269 V-VYTGDRISYKVTGGIIDLYFFAGPSPDSVIQQYTELIGRPAPMPYWSFGFHQCRYGYE 327
+ + ++Y+VTGGI+D Y G +P+ V+QQY +L+G PA YW+ GF R+ Y+
Sbjct: 271 IFIQPTPIVTYRVTGGILDFYILLGDTPEQVVQQYQQLVGLPAMPAYWNLGFQLSRWNYK 330
Query: 328 NVSDLKAVVAGYAKAGIPLEVMWTDIDYMDGYKDFTLDPINFPVNSMQNFVNTLHQNGQR 387
++ +K VV +AGIP + TDIDYM+ KDFT D + F N + FV LH +GQ+
Sbjct: 331 SLDVVKEVVRRNREAGIPFDTQVTDIDYMEDKKDFTYDQVAF--NGLPQFVQDLHDHGQK 388
Query: 388 YVLILDPGISVNE-----TYGTFIRGLKADIFI-KRDG-VPYLGEVWPGKVYYPDFVNPA 440
YV+ILDP IS+ TY T+ RG ++I + DG P +GEVWPG YPDF NP
Sbjct: 389 YVIILDPAISIGRRANGTTYATYERGNTQHVWINESDGSTPIIGEVWPGLTVYPDFTNPN 448
Query: 441 AETFWKGEIQLFRDILPMDGLWLDMNELSNFI--TSLPTPHSTLDDPPYKINNNGVRRPI 498
+W E +F + DGLW+DMNE+S+FI ++ + L+ PP+ + + + +
Sbjct: 449 CIDWWANECSIFHQEVQYDGLWIDMNEVSSFIQGSTKGCNVNKLNYPPF--TPDILDKLM 506
Query: 499 NNKTVPATALHYRNLTEYNTHNLYGLLEAKATHAALINV-NGKRPFILSRSTFVGSGKYT 557
+KT+ A+ +Y+ H+LYG A AT A+ V KR FIL+RSTF GSG++
Sbjct: 507 YSKTICMDAVQNWG-KQYDVHSLYGYSMAIATEQAVQKVFPNKRSFILTRSTFAGSGRHA 565
Query: 558 AHWTGDNAATWNDLAYSIPSILNFGLFGIPMVGADICGFSGDTTEELCRRWIQLGAFYPF 617
AHW GDN A+W + +SI +L F LFGIP+VGADICGF +TTEELCRRW+QLGAFYPF
Sbjct: 566 AHWLGDNTASWEQMEWSITGMLEFSLFGIPLVGADICGFVAETTEELCRRWMQLGAFYPF 625
Query: 618 ARDHSAIGTIRQELYFW---DTVAATARKVLGLRYRLLPYFYTLMYEAHMKGTAVARPMF 674
+R+H++ G Q+ F+ + ++R+ L +RY LLP+ YTL Y+AH+ G VARP+
Sbjct: 626 SRNHNSDGYEHQDPAFFGQNSLLVKSSRQYLTIRYTLLPFLYTLFYKAHVFGETVARPVL 685
Query: 675 FSFPQDVKTYRIDTQFLIGKGVMVSPVLKSGAVSVDAYFPSGNWFDLFNYSNSVSLNSGK 734
F +D ++ DT+FL G ++++PVLK GA +V AY P W+D Y + K
Sbjct: 686 HEFYEDTNSWIEDTEFLWGPALLITPVLKQGADTVSAYIPDAIWYD---YESGAKRPWRK 742
Query: 735 Q-ITLDAPPDHINVHVREGNILALQGEALTTKAARKTPFHLLVVVSSKETSTGEVFLDDG 793
Q + + P D I +H+R G I+ +Q +TT A+RK P L+V + T+ G+ F DDG
Sbjct: 743 QRVDMYLPADKIGLHLRGGYIIPIQEPDVTTTASRKNPLGLIVALGENNTAKGDFFWDDG 802
Query: 794 E 794
E
Sbjct: 803 E 803
>pdb|3TON|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TON|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TOP|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3TOP|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
Length = 908
Score = 500 bits (1287), Expect = e-141, Method: Compositional matrix adjust.
Identities = 304/820 (37%), Positives = 435/820 (53%), Gaps = 96/820 (11%)
Query: 31 CIFVAAEKDSVGYGYSVRSV--AVDSSLKSLTAGLGLIRSSSVYG-----PDIQSLNLFA 83
CI+ A+ V + Y V + D S A + SSVY + L L
Sbjct: 32 CIWEASNSSGVPFCYFVNDLYSVSDVQYNSHGATADISLKSSVYANAFPSTPVNPLRLDV 91
Query: 84 SFETKDRLRVRITDSKKQRWEIPQEI-IPRQSYCTHCWLPENRLNSPVNHQTGPGNHFLS 142
++ + L+ +I D K R+E+P + IP T PE +L +
Sbjct: 92 TYHKNEMLQFKIYDPNKNRYEVPVPLNIPSMPSST----PEGQLYDVL------------ 135
Query: 143 DPTSDLVFTLHTTPFGFSVKRRSSGDILFDTSPETSHSDTFLVFKDQYIQLSSALPIERS 202
+ PFG ++R+S+G I++D+ F D +I++S+ LP
Sbjct: 136 ---------IKKNPFGIEIRRKSTGTIIWDSQL------LGFTFSDMFIRISTRLP--SK 178
Query: 203 HLYGIGEHTKKSFKLTPN-DTLTLWNADLASANVDVNLYGSHPFYIDVRSPNGTTHGVLL 261
+LYG GE +S++ T +++ D N YG HP+Y+ + +G+ HGVLL
Sbjct: 179 YLYGFGETEHRSYRRDLEWHTWGMFSRD-QPPGYKKNSYGVHPYYMGLEE-DGSAHGVLL 236
Query: 262 LNSNGMDVVYTG-DRISYKVTGGIIDLYFFAGPSPDSVIQQYTELIGRPAPMPYWSFGFH 320
LNSN MDV + ++Y+ TGG++D Y F GP+P+ V QQYTELIGRP +PYWS GF
Sbjct: 237 LNSNAMDVTFQPLPALTYRTTGGVLDFYVFLGPTPELVTQQYTELIGRPVMVPYWSLGFQ 296
Query: 321 QCRYGYENVSDLKAVVAGYAKAGIPLEVMWTDIDYMDGYKDFTLDP--INFPVNSMQNFV 378
CRYGY+N S++ ++ A IP +V ++DIDYM+ DFTL P FP +
Sbjct: 297 LCRYGYQNDSEIASLYDEMVAAQIPYDVQYSDIDYMERQLDFTLSPKFAGFPA-----LI 351
Query: 379 NTLHQNGQRYVLILDPGISVNET--YGTFIRGLKADIFIK--RDGVPYLGEVWP------ 428
N + +G R +LILDP IS NET Y F RG++ D+FIK DG G+VWP
Sbjct: 352 NRMKADGMRVILILDPAISGNETQPYPAFTRGVEDDVFIKYPNDGDIVWGKVWPDFPDVV 411
Query: 429 ---------------GKVYYPDFVNPAAETFWKGEIQLFRD-------ILPMDGLWLDMN 466
V +PDF + +WK EI+ + L DG+W+DMN
Sbjct: 412 VNGSLDWDSQVELYRAYVAFPDFFRNSTAKWWKREIEELYNNPQNPERSLKFDGMWIDMN 471
Query: 467 ELSNFITSLPTP---HSTLDDPPYKINNNGVRRPINNKTVPATALHYRN----LTEYNTH 519
E S+F+ +P ++L+ PPY + R +++KT+ + + YN H
Sbjct: 472 EPSSFVNGAVSPGCRDASLNHPPYMPHLESRDRGLSSKTLCMESQQILPDGSLVQHYNVH 531
Query: 520 NLYGLLEAKATHAALINVNGKRPFILSRSTFVGSGKYTAHWTGDNAATWNDLAYSIPSIL 579
NLYG + + T+ A+ V G+R +++RSTF SG++ HW GDN A W+ L SI ++
Sbjct: 532 NLYGWSQTRPTYEAVQEVTGQRGVVITRSTFPSSGRWAGHWLGDNTAAWDQLKKSIIGMM 591
Query: 580 NFGLFGIPMVGADICGFSGDTTEELCRRWIQLGAFYPFARDHSAIGTIRQELYFWDTV-A 638
F LFGI GADICGF D E+C RW+QLGAFYPF+R+H+ IGT RQ+ WD
Sbjct: 592 EFSLFGISYTGADICGFFQDAEYEMCVRWMQLGAFYPFSRNHNTIGTRRQDPVSWDVAFV 651
Query: 639 ATARKVLGLRYRLLPYFYTLMYEAHMKGTAVARPMFFSFPQDVKTYRIDTQFLIGKGVMV 698
+R VL RY LLPY YTLM++AH +G V RP+ F D T+ ID+QFL+G +V
Sbjct: 652 NISRTVLQTRYTLLPYLYTLMHKAHTEGVTVVRPLLHEFVSDQVTWDIDSQFLLGPAFLV 711
Query: 699 SPVLKSGAVSVDAYFPSGNWFDLFNYSNSVSLNS-GKQITLDAPPDHINVHVREGNILAL 757
SPVL+ A +V AYFP W+D Y V +N+ G+ TL AP DHIN+HVR G IL
Sbjct: 712 SPVLERNARNVTAYFPRARWYD---YYTGVDINARGEWKTLPAPLDHINLHVRGGYILPW 768
Query: 758 QGEALTTKAARKTPFHLLVVVSSKETSTGEVFLDDGEEVE 797
Q AL T +R+ + + + T+ G +F DDG+ ++
Sbjct: 769 QEPALNTHLSRQKFMGFKIALDDEGTAGGWLFWDDGQSID 808
>pdb|2G3M|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3N|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
Length = 693
Score = 281 bits (718), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 191/657 (29%), Positives = 314/657 (47%), Gaps = 59/657 (8%)
Query: 201 RSHLYGIGEHTKKSFKL-TPNDTLTLWNADL-ASANVDVNLYGSHPFYIDVRSPNGTTHG 258
+ H+ G+GE K+F+L ++N D A LY S P +I V+ +G G
Sbjct: 61 KEHIIGLGE---KAFELDRKRKRYVMYNVDAGAYKKYQDPLYVSIPLFISVK--DGVATG 115
Query: 259 VLLLNSNGMDVVYTG----DRISYKVTGGIIDLYFFAGPSPDSVIQQYTELIGRPAPMPY 314
NS + G D++ + ++ Y GP + V+++YTEL G+P P
Sbjct: 116 -YFFNSASKVIFDVGLEEYDKVIVTIPEDSVEFYVIEGPRIEDVLEKYTELTGKPFLPPM 174
Query: 315 WSFGFHQCRYGYENVSDLKAVVAGYAKAGIPLEVMWTDIDYMDGYKDFTLDPINFPVNSM 374
W+FG+ RY Y + +V K G + ++ DI YMD YK FT P FP
Sbjct: 175 WAFGYMISRYSYYPQDKVVELVDIMQKEGFRVAGVFLDIHYMDSYKLFTWHPYRFP--EP 232
Query: 375 QNFVNTLHQNGQRYVLILDPGISVNETYGTFIRGLKADIFIKRDGVPYLGEVWPGKVYYP 434
+ ++ LH+ + + I+D GI V++ Y F+ G+ I+ G ++G++WPG YP
Sbjct: 233 KKLIDELHKRNVKLITIVDHGIRVDQNYSPFLSGMGKFCEIE-SGELFVGKMWPGTTVYP 291
Query: 435 DFVNPAAETFWKGEIQLFRDILPMDGLWLDMNELSNFITSLPTPHSTLDDPPYKINNNGV 494
DF +W G I + +DG+WLDMNE ++F ++ L P + ++ +
Sbjct: 292 DFFREDTREWWAGLISEWLS-QGVDGIWLDMNEPTDFSRAIEI-RDVLSSLPVQFRDDRL 349
Query: 495 RRPINNKTVPATALHY---RNLTEYNTHNLYGLLEAKATHAALINVNGKRPFILSRSTFV 551
T P +HY + + N Y L EA AT + FILSR+ +
Sbjct: 350 V-----TTFPDNVVHYLRGKRVKHEKVRNAYPLYEAMATFKGFRTSHRNEIFILSRAGYA 404
Query: 552 GSGKYTAHWTGDNAATWNDLAYSIPSILNFGLFGIPMVGADICGFSG------DTTEELC 605
G +Y WTGDN +W+DL + +L + G+P VG DI GF G D + +L
Sbjct: 405 GIQRYAFIWTGDNTPSWDDLKLQLQLVLGLSISGVPFVGCDIGGFQGRNFAEIDNSMDLL 464
Query: 606 RRWIQLGAFYPFARDHSAIGTIRQE-LYFWDTVAATARKVLGLRYRLLPYFYTLMYEAHM 664
++ L F+PF R H A I E ++ D ++++ LRY+ LPY Y+L EA
Sbjct: 465 VKYYALALFFPFYRSHKATDGIDTEPVFLPDYYKEKVKEIVELRYKFLPYIYSLALEASE 524
Query: 665 KGTAVARPMFFSFPQDVKTYRIDTQFLIGKGVMVSPVLKSGAVSVDAYFPSGNWFDLFNY 724
KG V RP+F+ F D YRI+ ++++GK ++ +P++ S S P G W +NY
Sbjct: 525 KGHPVIRPLFYEFQDDDDMYRIEDEYMVGKYLLYAPIV-SKEESRLVTLPRGKW---YNY 580
Query: 725 SNSVSLNSGKQITLDAPPDHINVHVREGNILALQGEAL---------------TTKAARK 769
N +N GK + + +++REG+I+ L+G+ L T ++ +
Sbjct: 581 WNGEIIN-GKSVVKST--HELPIYLREGSIIPLEGDELIVYGETSFKRYDNAEITSSSNE 637
Query: 770 TPFHLLVVVS----SKETSTGEVFLDDGEEVEMGKEAGKWSFVRFYSQMIKSNVNIR 822
F + VS + E ++ +DD +E+++ K ++V +Q I+ +N+
Sbjct: 638 IKFSREIYVSKLTITSEKPVSKIIVDDSKEIQVEKTMQN-TYVAKINQKIRGKINLE 693
>pdb|3M46|A Chain A, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M46|B Chain B, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 260 bits (665), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 177/619 (28%), Positives = 290/619 (46%), Gaps = 42/619 (6%)
Query: 200 ERSHLYGIGEHT----KKSFKLTPNDTLTLWNADLASANVDVNLYGSHPFYIDVRSPNGT 255
E +YG+GE K+ + N T AD +LYG+H F I T
Sbjct: 49 EDDIVYGLGESNRGINKRGYCYISNCT-----ADPIHTEDKRSLYGAHNFII---VSGKT 100
Query: 256 THGVLLLNSNGM--DVVYTG-DRISYKVTGGIIDLYFFAGPSPDSVIQQYTELIGRPAPM 312
T G+ + + D+ YT D + +D+Y G + +++Q+ +IGR
Sbjct: 101 TFGLFFDYPSKLTFDIGYTRMDTLKVSCENADLDIYVIEGENAYDIVKQFRRVIGRSYIP 160
Query: 313 PYWSFGFHQCRYGYENVSDLKAVVAGYAKAGIPLEVMWTDIDYMDGYKDFTLDPINFPVN 372
P ++FGF Q R+GY D +AV GY + IP+++++ DIDYM +KDFT++ NFP
Sbjct: 161 PKFAFGFGQSRWGYTTKEDFRAVAKGYRENHIPIDMIYMDIDYMQDFKDFTVNEKNFP-- 218
Query: 373 SMQNFVNTLHQNGQRYVLILDPGISVNETYGTFIRGLKADIFIKR-DGVPYLGEVWPGKV 431
FV + R + I+D G+ V + Y + G+K + F KR DG ++ VWPG
Sbjct: 219 DFPEFVKEMKDQELRLIPIIDAGVKVEKGYEVYEEGVKNNYFCKREDGSDFVAAVWPGDT 278
Query: 432 YYPDFVNPAAETFWKGEIQLFRDILPMDGLWLDMNELSNFITSLPTPHSTLDDPPYKINN 491
++PD +NP A W G+ F ++G W DMNE + F +S + + +
Sbjct: 279 HFPDMLNPEARK-WFGDKYRFLIDQGIEGFWNDMNEPAIFYSSEGLAEAKEFAGEFAKDT 337
Query: 492 NGVRRP----INNKTVPATALHY---------RNLTEYNTHNLYGLLEAKATHAALINVN 538
G P K + + Y + + HNL+G +A A ++
Sbjct: 338 EGKIHPWAMQAKMKDIVNSPEDYKRFYHNVNGKKIRHDKVHNLFGYNMTRAAGEAFERID 397
Query: 539 GKRPFIL-SRSTFVGSGKYTAHWTGDNAATWNDLAYSIPSILNFGLFGIPMVGADICGFS 597
++ F++ SRS+++G +Y W GDN + W+ + ++ + + + G GAD+ GF
Sbjct: 398 PEKRFLMFSRSSYIGMHRYGGIWMGDNKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFG 457
Query: 598 GDTTEELCRRWIQLGAFYPFARDHSAIGTIRQELYFWDTVAATARKVLGLRYRLLPYFYT 657
DTT +L R++ LG F P RDH+A GT QE Y ++ + R V+ RYRL+PY Y+
Sbjct: 458 DDTTRDLLLRFLALGVFTPLMRDHAAEGTREQECYQFENI-EDFRSVINARYRLVPYLYS 516
Query: 658 LMYEAHMKGTAVARPMFFSFPQDVKTYRIDTQFLIGKGVMVSPVLKSGAVSVDAYFPSGN 717
+A + +P+ F +P D R++ Q ++G +M++PV + A Y P
Sbjct: 517 EYMKAALNDDMYFKPLGFVYPDDKMAIRVEDQLMLGNEIMIAPVYEQNARGRYVYLPEEM 576
Query: 718 WFDLFNYSNSVS---LNSGKQITLDAPPDHINVHVREGNILALQGEALTTKAARKTPFHL 774
F F S+S L G +D + + + +R G + + A K L
Sbjct: 577 KFIKFMPDGSISEEVLEKGVHY-VDVALNEVPLFIRSGKCIPVAEAAECVKDIDTENMQL 635
Query: 775 LVVVSSKETSTGEVFLDDG 793
+ E S+ ++ DDG
Sbjct: 636 I----GYEGSSYTLYEDDG 650
>pdb|3PHA|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|C Chain C, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|D Chain D, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 667
Score = 260 bits (665), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 168/577 (29%), Positives = 276/577 (47%), Gaps = 33/577 (5%)
Query: 238 NLYGSHPFYIDVRSPNGTTHGVLLLNSNGM--DVVYTG-DRISYKVTGGIIDLYFFAGPS 294
+LYG+H F I TT G+ + + D+ YT D + +D+Y G +
Sbjct: 86 SLYGAHNFII---VSGKTTFGLFFDYPSKLTFDIGYTRMDTLKVSCENADLDIYVIEGEN 142
Query: 295 PDSVIQQYTELIGRPAPMPYWSFGFHQCRYGYENVSDLKAVVAGYAKAGIPLEVMWTDID 354
+++Q+ +IGR P ++FGF Q RYGY D +AV GY + IP+++++ DID
Sbjct: 143 AYDIVKQFRRVIGRSYIPPKFAFGFGQSRYGYTTKEDFRAVAKGYRENHIPIDMIYMDID 202
Query: 355 YMDGYKDFTLDPINFPVNSMQNFVNTLHQNGQRYVLILDPGISVNETYGTFIRGLKADIF 414
YM +KDFT++ NFP FV + R + I+D G+ V + Y + G+K + F
Sbjct: 203 YMQDFKDFTVNEKNFP--DFPEFVKEMKDQELRLIPIIDAGVKVEKGYEVYEEGVKNNYF 260
Query: 415 IKR-DGVPYLGEVWPGKVYYPDFVNPAAETFWKGEIQLFRDILPMDGLWLDMNELSNFIT 473
KR DG ++ VWPG ++PD +NP A W G+ F ++G W DMNE + F +
Sbjct: 261 CKREDGSDFVAAVWPGDTHFPDMLNPEARK-WFGDKYRFLIDQGIEGFWNDMNEPAIFYS 319
Query: 474 SLPTPHSTLDDPPYKINNNGVRRP----INNKTVPATALHY---------RNLTEYNTHN 520
S + + + G P K + + Y + + HN
Sbjct: 320 SEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDYKRFYHNVNGKKIRHDKVHN 379
Query: 521 LYGLLEAKATHAALINVNGKRPFIL-SRSTFVGSGKYTAHWTGDNAATWNDLAYSIPSIL 579
L+G +A A ++ ++ F++ SRS+++G +Y W GDN + W+ + ++ +
Sbjct: 380 LFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIWMGDNKSWWSHILLNLKMLP 439
Query: 580 NFGLFGIPMVGADICGFSGDTTEELCRRWIQLGAFYPFARDHSAIGTIRQELYFWDTVAA 639
+ + G GAD+ GF DTT +L R++ LG F P RDH+A GT QE Y ++ +
Sbjct: 440 SLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRDHAAEGTREQECYQFENI-E 498
Query: 640 TARKVLGLRYRLLPYFYTLMYEAHMKGTAVARPMFFSFPQDVKTYRIDTQFLIGKGVMVS 699
R V+ RYRL+PY Y+ +A + +P+ F +P D R++ Q ++G +M++
Sbjct: 499 DFRSVINARYRLVPYLYSEYMKAALNDDMYFKPLGFVYPDDKMAIRVEDQLMLGNEIMIA 558
Query: 700 PVLKSGAVSVDAYFPSGNWFDLFNYSNSVS---LNSGKQITLDAPPDHINVHVREGNILA 756
PV + A Y P F F S+S L G +D + + + +R G +
Sbjct: 559 PVYEQNARGRYVYLPEEMKFIKFMPDGSISEEVLEKGVHY-VDVALNEVPLFIRSGKCIP 617
Query: 757 LQGEALTTKAARKTPFHLLVVVSSKETSTGEVFLDDG 793
+ A K L+ E S+ ++ DDG
Sbjct: 618 VAEAAECVKDIDTENMQLI----GYEGSSYTLYEDDG 650
>pdb|3NUK|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
pdb|3NUK|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
Length = 666
Score = 260 bits (665), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 168/577 (29%), Positives = 276/577 (47%), Gaps = 33/577 (5%)
Query: 238 NLYGSHPFYIDVRSPNGTTHGVLLLNSNGM--DVVYTG-DRISYKVTGGIIDLYFFAGPS 294
+LYG+H F I TT G+ + + D+ YT D + +D+Y G +
Sbjct: 86 SLYGAHNFII---VSGKTTFGLFFDYPSKLTFDIGYTRMDTLKVSCENADLDIYVIEGEN 142
Query: 295 PDSVIQQYTELIGRPAPMPYWSFGFHQCRYGYENVSDLKAVVAGYAKAGIPLEVMWTDID 354
+++Q+ +IGR P ++FGF Q RYGY D +AV GY + IP+++++ DID
Sbjct: 143 AYDIVKQFRRVIGRSYIPPKFAFGFGQSRYGYTTKEDFRAVAKGYRENHIPIDMIYMDID 202
Query: 355 YMDGYKDFTLDPINFPVNSMQNFVNTLHQNGQRYVLILDPGISVNETYGTFIRGLKADIF 414
YM +KDFT++ NFP FV + R + I+D G+ V + Y + G+K + F
Sbjct: 203 YMQDFKDFTVNEKNFP--DFPEFVKEMKDQELRLIPIIDAGVKVEKGYEVYEEGVKNNYF 260
Query: 415 IKR-DGVPYLGEVWPGKVYYPDFVNPAAETFWKGEIQLFRDILPMDGLWLDMNELSNFIT 473
KR DG ++ VWPG ++PD +NP A W G+ F ++G W DMNE + F +
Sbjct: 261 CKREDGSDFVAAVWPGDTHFPDMLNPEARK-WFGDKYRFLIDQGIEGFWNDMNEPAIFYS 319
Query: 474 SLPTPHSTLDDPPYKINNNGVRRP----INNKTVPATALHY---------RNLTEYNTHN 520
S + + + G P K + + Y + + HN
Sbjct: 320 SEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDYKRFYHNVNGKKIRHDKVHN 379
Query: 521 LYGLLEAKATHAALINVNGKRPFIL-SRSTFVGSGKYTAHWTGDNAATWNDLAYSIPSIL 579
L+G +A A ++ ++ F++ SRS+++G +Y W GDN + W+ + ++ +
Sbjct: 380 LFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIWMGDNKSWWSHILLNLKMLP 439
Query: 580 NFGLFGIPMVGADICGFSGDTTEELCRRWIQLGAFYPFARDHSAIGTIRQELYFWDTVAA 639
+ + G GAD+ GF DTT +L R++ LG F P RDH+A GT QE Y ++ +
Sbjct: 440 SLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRDHAAEGTREQECYQFENI-E 498
Query: 640 TARKVLGLRYRLLPYFYTLMYEAHMKGTAVARPMFFSFPQDVKTYRIDTQFLIGKGVMVS 699
R V+ RYRL+PY Y+ +A + +P+ F +P D R++ Q ++G +M++
Sbjct: 499 DFRSVINARYRLVPYLYSEYMKAALNDDMYFKPLGFVYPDDKMAIRVEDQLMLGNEIMIA 558
Query: 700 PVLKSGAVSVDAYFPSGNWFDLFNYSNSVS---LNSGKQITLDAPPDHINVHVREGNILA 756
PV + A Y P F F S+S L G +D + + + +R G +
Sbjct: 559 PVYEQNARGRYVYLPEEMKFIKFMPDGSISEEVLEKGVHY-VDVALNEVPLFIRSGKCIP 617
Query: 757 LQGEALTTKAARKTPFHLLVVVSSKETSTGEVFLDDG 793
+ A K L+ E S+ ++ DDG
Sbjct: 618 VAEAAECVKDIDTENMQLI----GYEGSSYTLYEDDG 650
>pdb|3NSX|A Chain A, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
pdb|3NSX|B Chain B, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
Length = 666
Score = 255 bits (652), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 166/577 (28%), Positives = 275/577 (47%), Gaps = 33/577 (5%)
Query: 238 NLYGSHPFYIDVRSPNGTTHGVLLLNSNGM--DVVYTG-DRISYKVTGGIIDLYFFAGPS 294
+LYG+H F I TT G+ + + D+ YT D + +D+Y G +
Sbjct: 86 SLYGAHNFII---VSGKTTFGLFFDYPSKLTFDIGYTRMDTLKVSCENADLDIYVIEGEN 142
Query: 295 PDSVIQQYTELIGRPAPMPYWSFGFHQCRYGYENVSDLKAVVAGYAKAGIPLEVMWTDID 354
+++Q+ +IGR P ++FGF Q R+GY D +AV GY + IP+++++ DID
Sbjct: 143 AYDIVKQFRRVIGRSYIPPKFAFGFGQSRWGYTTKEDFRAVAKGYRENHIPIDMIYMDID 202
Query: 355 YMDGYKDFTLDPINFPVNSMQNFVNTLHQNGQRYVLILDPGISVNETYGTFIRGLKADIF 414
YM +KDFT++ NFP FV + R + I+D G+ V + Y + G+K + F
Sbjct: 203 YMQDFKDFTVNEKNFP--DFPEFVKEMKDQELRLIPIIDAGVKVEKGYEVYEEGVKNNYF 260
Query: 415 IKR-DGVPYLGEVWPGKVYYPDFVNPAAETFWKGEIQLFRDILPMDGLWLDMNELSNFIT 473
KR DG ++ VWPG ++PD +NP A W G+ F ++G W DMNE + F +
Sbjct: 261 CKREDGSDFVAAVWPGDTHFPDMLNPEARK-WFGDKYRFLIDQGIEGFWNDMNEPAIFYS 319
Query: 474 SLPTPHSTLDDPPYKINNNGVRRP----INNKTVPATALHY---------RNLTEYNTHN 520
S + + + G P K + + Y + + HN
Sbjct: 320 SEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDYKRFYHNVNGKKIRHDKVHN 379
Query: 521 LYGLLEAKATHAALINVNGKRPFIL-SRSTFVGSGKYTAHWTGDNAATWNDLAYSIPSIL 579
L+G +A A ++ ++ F++ SRS+++G +Y W G N + W+ + ++ +
Sbjct: 380 LFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIWMGANKSWWSHILLNLKMLP 439
Query: 580 NFGLFGIPMVGADICGFSGDTTEELCRRWIQLGAFYPFARDHSAIGTIRQELYFWDTVAA 639
+ + G GAD+ GF DTT +L R++ LG F P RDH+A GT QE Y ++ +
Sbjct: 440 SLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRDHAAEGTREQECYQFENI-E 498
Query: 640 TARKVLGLRYRLLPYFYTLMYEAHMKGTAVARPMFFSFPQDVKTYRIDTQFLIGKGVMVS 699
R V+ RYRL+PY Y+ +A + +P+ F +P D R++ Q ++G +M++
Sbjct: 499 DFRSVINARYRLVPYLYSEYMKAALNDDMYFKPLGFVYPDDKMAIRVEDQLMLGNEIMIA 558
Query: 700 PVLKSGAVSVDAYFPSGNWFDLFNYSNSVS---LNSGKQITLDAPPDHINVHVREGNILA 756
PV + A Y P F F S+S L G +D + + + +R G +
Sbjct: 559 PVYEQNARGRYVYLPEEMKFIKFMPDGSISEEVLEKGVHY-VDVALNEVPLFIRSGKCIP 617
Query: 757 LQGEALTTKAARKTPFHLLVVVSSKETSTGEVFLDDG 793
+ A K L+ E S+ ++ DDG
Sbjct: 618 VAEAAECVKDIDTENMQLI----GYEGSSYTLYEDDG 650
>pdb|3M6D|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M6D|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3MKK|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3MKK|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3POC|A Chain A, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3POC|B Chain B, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 666
Score = 255 bits (652), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 166/577 (28%), Positives = 275/577 (47%), Gaps = 33/577 (5%)
Query: 238 NLYGSHPFYIDVRSPNGTTHGVLLLNSNGM--DVVYTG-DRISYKVTGGIIDLYFFAGPS 294
+LYG+H F I TT G+ + + D+ YT D + +D+Y G +
Sbjct: 86 SLYGAHNFII---VSGKTTFGLFFDYPSKLTFDIGYTRMDTLKVSCENADLDIYVIEGEN 142
Query: 295 PDSVIQQYTELIGRPAPMPYWSFGFHQCRYGYENVSDLKAVVAGYAKAGIPLEVMWTDID 354
+++Q+ +IGR P ++FGF Q R+GY D +AV GY + IP+++++ DID
Sbjct: 143 AYDIVKQFRRVIGRSYIPPKFAFGFGQSRWGYTTKEDFRAVAKGYRENHIPIDMIYMDID 202
Query: 355 YMDGYKDFTLDPINFPVNSMQNFVNTLHQNGQRYVLILDPGISVNETYGTFIRGLKADIF 414
YM +KDFT++ NFP FV + R + I+D G+ V + Y + G+K + F
Sbjct: 203 YMQDFKDFTVNEKNFP--DFPEFVKEMKDQELRLIPIIDAGVKVEKGYEVYEEGVKNNYF 260
Query: 415 IKR-DGVPYLGEVWPGKVYYPDFVNPAAETFWKGEIQLFRDILPMDGLWLDMNELSNFIT 473
KR DG ++ VWPG ++PD +NP A W G+ F ++G W MNE + F +
Sbjct: 261 CKREDGSDFVAAVWPGDTHFPDMLNPEARK-WFGDKYRFLIDQGIEGFWNAMNEPAIFYS 319
Query: 474 SLPTPHSTLDDPPYKINNNGVRRP----INNKTVPATALHY---------RNLTEYNTHN 520
S + + + G P K + + Y + + HN
Sbjct: 320 SEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDYKRFYHNVNGKKIRHDKVHN 379
Query: 521 LYGLLEAKATHAALINVNGKRPFIL-SRSTFVGSGKYTAHWTGDNAATWNDLAYSIPSIL 579
L+G +A A ++ ++ F++ SRS+++G +Y W GDN + W+ + ++ +
Sbjct: 380 LFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIWMGDNKSWWSHILLNLKMLP 439
Query: 580 NFGLFGIPMVGADICGFSGDTTEELCRRWIQLGAFYPFARDHSAIGTIRQELYFWDTVAA 639
+ + G GAD+ GF DTT +L R++ LG F P RDH+A GT QE Y ++ +
Sbjct: 440 SLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRDHAAEGTREQECYQFENI-E 498
Query: 640 TARKVLGLRYRLLPYFYTLMYEAHMKGTAVARPMFFSFPQDVKTYRIDTQFLIGKGVMVS 699
R V+ RYRL+PY Y+ +A + +P+ F +P D R++ Q ++G +M++
Sbjct: 499 DFRSVINARYRLVPYLYSEYMKAALNDDMYFKPLGFVYPDDKMAIRVEDQLMLGNEIMIA 558
Query: 700 PVLKSGAVSVDAYFPSGNWFDLFNYSNSVS---LNSGKQITLDAPPDHINVHVREGNILA 756
PV + A Y P F F S+S L G +D + + + +R G +
Sbjct: 559 PVYEQNARGRYVYLPEEMKFIKFMPDGSISEEVLEKGVHY-VDVALNEVPLFIRSGKCIP 617
Query: 757 LQGEALTTKAARKTPFHLLVVVSSKETSTGEVFLDDG 793
+ A K L+ E S+ ++ DDG
Sbjct: 618 VAEAAECVKDIDTENMQLI----GYEGSSYTLYEDDG 650
>pdb|3N04|A Chain A, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
pdb|3N04|B Chain B, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 233 bits (593), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 164/577 (28%), Positives = 268/577 (46%), Gaps = 33/577 (5%)
Query: 238 NLYGSHPFYIDVRSPNGTTHGVLLLNSNGM--DVVYT-GDRISYKVTGGIIDLYFFAGPS 294
+LYG+H F I TT G+ + + D+ YT D + +D+Y G +
Sbjct: 86 SLYGAHNFII---VSGKTTFGLFFDYPSKLTFDIGYTRXDTLKVSCENADLDIYVIEGEN 142
Query: 295 PDSVIQQYTELIGRPAPMPYWSFGFHQCRYGYENVSDLKAVVAGYAKAGIPLEVMWTDID 354
+++Q+ +IGR P ++FGF Q R+GY D +AV GY + IP++ ++ DID
Sbjct: 143 AYDIVKQFRRVIGRSYIPPKFAFGFGQSRWGYTTKEDFRAVAKGYRENHIPIDXIYXDID 202
Query: 355 YMDGYKDFTLDPINFPVNSMQNFVNTLHQNGQRYVLILDPGISVNETYGTFIRGLKADIF 414
Y +KDFT++ NFP FV R + I+D G+ V + Y + G+K + F
Sbjct: 203 YXQDFKDFTVNEKNFP--DFPEFVKEXKDQELRLIPIIDAGVKVEKGYEVYEEGVKNNYF 260
Query: 415 IKR-DGVPYLGEVWPGKVYYPDFVNPAAETFWKGEIQLFRDILPMDGLWLDMNELSNFIT 473
KR DG ++ VWPG ++PD +NP A W G+ F ++G W D NE + F +
Sbjct: 261 CKREDGSDFVAAVWPGDTHFPDXLNPEARK-WFGDKYRFLIDQGIEGFWNDXNEPAIFYS 319
Query: 474 SLPTPHSTLDDPPYKINNNGVRRP----INNKTVPATALHY---------RNLTEYNTHN 520
S + + + G P K + + Y + + HN
Sbjct: 320 SEGLAEAKEFAGEFAKDTEGKIHPWAXQAKXKDIVNSPEDYKRFYHNVNGKKIRHDKVHN 379
Query: 521 LYGLLEAKATHAALINVNGKRPFI-LSRSTFVGSGKYTAHWTGDNAATWNDLAYSIPSIL 579
L+G +A A ++ ++ F+ SRS+++G +Y W GDN + W+ + ++ +
Sbjct: 380 LFGYNXTRAAGEAFERIDPEKRFLXFSRSSYIGXHRYGGIWXGDNKSWWSHILLNLKXLP 439
Query: 580 NFGLFGIPMVGADICGFSGDTTEELCRRWIQLGAFYPFARDHSAIGTIRQELYFWDTVAA 639
+ G GAD+ GF DTT +L R++ LG F P RDH+A GT QE Y ++ +
Sbjct: 440 SLNXCGFXYTGADLGGFGDDTTRDLLLRFLALGVFTPLXRDHAAEGTREQECYQFENI-E 498
Query: 640 TARKVLGLRYRLLPYFYTLMYEAHMKGTAVARPMFFSFPQDVKTYRIDTQFLIGKGVMVS 699
R V+ RYRL+PY Y+ +A + +P+ F +P D R++ Q +G + ++
Sbjct: 499 DFRSVINARYRLVPYLYSEYXKAALNDDXYFKPLGFVYPDDKXAIRVEDQLXLGNEIXIA 558
Query: 700 PVLKSGAVSVDAYFPSGNWFDLFNYSNSVS---LNSGKQITLDAPPDHINVHVREGNILA 756
PV + A Y P F F S+S L G +D + + + +R G +
Sbjct: 559 PVYEQNARGRYVYLPEEXKFIKFXPDGSISEEVLEKGVHY-VDVALNEVPLFIRSGKCIP 617
Query: 757 LQGEALTTKAARKTPFHLLVVVSSKETSTGEVFLDDG 793
+ A K L+ E S+ ++ DDG
Sbjct: 618 VAEAAECVKDIDTENXQLI----GYEGSSYTLYEDDG 650
>pdb|2XVG|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus
pdb|2XVK|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With
5-Fluoro-Alpha-D-Xylopyranosyl Fluoride
pdb|2XVL|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With Pentaerythritol
Propoxylate (5 4 Po Oh)
Length = 1020
Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 150/563 (26%), Positives = 234/563 (41%), Gaps = 73/563 (12%)
Query: 281 TGGIIDLYFFAGPSPDSVIQQYTELIGRPAPMPYWSFGFHQCRYGYENVSDLKAVVAGYA 340
TG ID YF AG + D +I Y +L G+ +P W++GF Q R Y++ ++ + Y
Sbjct: 399 TGKAIDYYFVAGDTKDDIISGYRQLTGKSVMLPKWAYGFWQSRERYKSSDEIIQNLKEYR 458
Query: 341 KAGIPLEVMWTDIDYM--DGYKDFTLDPINFPVNSMQNFVNTLH-QNGQRYVLILDPGIS 397
IP++ + D Y D + D FP + V+ +H N Q + +
Sbjct: 459 DRKIPIDNIVLDWSYWPEDAWGSHDFDKQFFP--DPKALVDKVHAMNAQIMISVWPKFYP 516
Query: 398 VNETYGTFIRGLKADIFIKRDGVPYLGEVWPGKVYYPDFVNP----AAETFWKGEIQLFR 453
+ Y + L A F+ + W GK Y F +P A FWK +I+
Sbjct: 517 TTDNY----KELNAKGFMFNRNLDEKNLDWIGKGYLNAFYDPFSPEATAIFWK-QIRDKI 571
Query: 454 DILPMDGLWLDMNELSNFITSLPTPHSTLDDPPYKINNNGVRRPINNKTVPATALHYRNL 513
++ D WLD E P HS L + T N
Sbjct: 572 NVHGFDAWWLDAVE--------PDIHSNL--------------TFEKRKWLMTPNARGNG 609
Query: 514 TEYNTHNLYGLLEAKATHAALINVNG-KRPFILSRSTFVGSGKY-TAHWTGDNAATWNDL 571
E N Y + A+ + + +G KR FIL+RS F G + +A W+GD + W+D+
Sbjct: 610 AE--IFNAYAVPHAEGVYQGELATDGDKRSFILTRSGFGGIQRTGSAIWSGDIVSRWSDM 667
Query: 572 AYSIPSILNFGLFGIPMVGADICGFSG-----------------------DTTEELCRRW 608
I + + L G+ DI GF+ D +EL RW
Sbjct: 668 KDQIAAGIGTNLAGVTNWTFDIGGFTPEDRFRHGKKGFVGSWTALDAEQVDEWQELNTRW 727
Query: 609 IQLGAFYPFARDHSAIGTIRQELYFWDTVAATARKVL---GLRYRLLPYFYTLMYEAHMK 665
Q GAF P R H R+ D ++ LRY L+PY YTL + + K
Sbjct: 728 YQFGAFVPLYRSHGQ-NPYREIFNIADEGTEVYNAMVWYTKLRYYLMPYIYTLGGDTYHK 786
Query: 666 GTAVARPMFFSFPQDVKTYRIDTQFLIGKGVMVSPVLKSGAVSVDAYFPSGNWFDLFNYS 725
+ R + FP D K + I+TQ++ G +V+PV + A S D Y P+G+ D +N+
Sbjct: 787 DGTIMRGLVMDFPNDRKAWDINTQYMFGPAFLVNPVYEYKARSRDVYLPAGS--DWYNFY 844
Query: 726 NSVSLNSGKQITLDAPPDHINVHVREGNILALQGEALTTKAARKTPFHLLVVVSSKETST 785
L G+ IT DAP + + V+ G I+ +P LL+ V + +
Sbjct: 845 TGEKLAGGQTITADAPLARVPLFVKAGAIVPTGPLIQHVDEGLNSP--LLITVYTGANGS 902
Query: 786 GEVFLDDGEEVEMGKEAGKWSFV 808
+++ DDG ++ + G+WS +
Sbjct: 903 FDIYEDDGRSLKY--QQGEWSRI 923
>pdb|4B9Y|A Chain A, Crystal Structure Of Apo Agd31b, Alpha-transglucosylase In
Glycoside Hydrolase Family 31
pdb|4B9Z|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With Acarbose
pdb|4BA0|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With 5f-alpha-glcf
Length = 817
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 141/548 (25%), Positives = 231/548 (42%), Gaps = 60/548 (10%)
Query: 264 SNGMDVVYT-GDRISYKVTGGIIDLYFFAGPSPDSVIQQYTELIGRPAPMPYWSFGFHQC 322
S MD+ T D + + G AG S S+I+ +T++ GR P W+ G
Sbjct: 210 SGAMDIGKTESDILQLEAKSGRSAYILVAGNSYPSLIENFTQVTGRQPLPPRWALGSFAS 269
Query: 323 RYGYENVSDLKAVVAGYAKAGIPLEVM-----WTDIDYMDGYKDFTLDPINFP--VNSMQ 375
R+GY + ++ +A V Y PL+ + W D + D NFP ++ M
Sbjct: 270 RFGYRSEAETRATVQKYKTEDFPLDTIVLDLYWFGKDIKGHMGNLDWDKENFPTPLDMMA 329
Query: 376 NFVNTLHQNGQRYVLILDPGISVNETYGTFIRGLKADIFIKR-DGVPYLGEVWPGKVYYP 434
+F Q G + VLI +P + + + +KA K G P E++ G
Sbjct: 330 DF----KQQGVKTVLITEPFVLTSSK--RWDDAVKAKALAKDPQGQPKAFELYFGNGGII 383
Query: 435 DFVNPAAETFWKGEIQLFRDILP--MDGLWLDMNELSNFITSLPTPHSTLDDPPYKINNN 492
D + ++ +++D+ + G W D+ E P +D + I +
Sbjct: 384 DVFSKEGSRWFSS---IYKDLSKQGVAGWWGDLGE----------PEMHPEDTQHAIGDA 430
Query: 493 GVRRPINNKTVPATALHYRNLTEYNTHNLYGLLEAKATHAALINVNGK-RPFILSRSTFV 551
HN YG A+ + ++ + RPFI+ R+ FV
Sbjct: 431 DT-----------------------VHNAYGHRWAEMLYQQQLDQFPELRPFIMMRAGFV 467
Query: 552 GSGKY-TAHWTGDNAATWNDLAYSIPSILNFGLFGIPMVGADICGFSGDTT--EELCRRW 608
GS +Y WTGD + TW LA + L L G + +D+ GF+ T +E+ RW
Sbjct: 468 GSQRYGMIPWTGDVSRTWGGLASQVELALQMSLLGFGYIHSDLGGFADGETLDKEMYIRW 527
Query: 609 IQLGAFYPFARDHSAIGTIRQELYFWDTVAATARKVLGLRYRLLPYFYTLMYEAHMKGTA 668
+Q G F P R H + ++ + A R ++ LRYR+LPY YT Y+ + G
Sbjct: 528 LQYGVFQPVYRPHGQDHIPSEPVFQDEETKAILRPLVKLRYRMLPYIYTAAYQNTLTGMP 587
Query: 669 VARPMFFSFPQDVKTYRIDTQFLIGKGVMVSPVLKSGAVSVDAYFPSGNWFDLFNYSNSV 728
+ RP+FFS ++ T + G ++V+P+ ++G SV P G WFD + ++
Sbjct: 588 LMRPLFFSDEKNPALIDNKTSYFWGDSLLVTPITQAGVESVSIPAPKGVWFDF--WKDTR 645
Query: 729 SLNSGKQITLDAPPDHINVHVREGNILALQGEALTTKAARKTPFHLLVVV-SSKETSTGE 787
G +TL I V V+ G + TT+ R + +S + GE
Sbjct: 646 YQTDGAPLTLPTDLHTIPVLVKAGAFMPYVPAVSTTEDYRSDSLEIHYYADASVPLAQGE 705
Query: 788 VFLDDGEE 795
+F DDG++
Sbjct: 706 IFEDDGKD 713
>pdb|1XSI|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSK|A Chain A, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|B Chain B, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|C Chain C, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|D Chain D, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|E Chain E, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|F Chain F, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
Length = 778
Score = 152 bits (384), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 147/571 (25%), Positives = 233/571 (40%), Gaps = 78/571 (13%)
Query: 204 LYGIGEHTKKSFKLTPNDTLTLWNADLASANVDVNLYGSHPFYIDVRSPNGTTHGVLLLN 263
+YG+GE + + + T+ WN D ++ Y + PFY+ R +GVL+ +
Sbjct: 162 VYGLGE--RFTALVRNGQTVETWNRDGGTSTEQA--YKNIPFYMTNRG-----YGVLVNH 212
Query: 264 SNGMDVVYTGDRIS---YKVTGGIIDLYFFAGPSPDSVIQQYTELIGRPAPMPYWSFGFH 320
+ +++S + V ++ + GP+P +V+ +YT GRPA P WSFG
Sbjct: 213 PQCVSFEVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLW 272
Query: 321 QCRYGYENVSD--LKAVVAGYAKAGIPLEVMWTDIDYMDGYK--DFTLDPINFPVNSMQN 376
N + + + + G A+ +PL V D +M ++ DF DP+ FP +
Sbjct: 273 LTTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFP--DPEG 330
Query: 377 FVNTLHQNGQRYVLILDPGISVNETYGTFIRGLKADIFIKR-DGVPYLGEVW-PGKVYYP 434
+ L G + + ++P I + F + +KR DG + + W PG Y
Sbjct: 331 MIRRLKAKGLKICVWINPYIG--QKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIY- 387
Query: 435 DFVNPAAETFW----KGEIQLFRDILPMDGLWLDMNELSNFITSLPTPHSTLD-DPPYKI 489
DF NP A ++ KG + + D D F +PT D P K+
Sbjct: 388 DFTNPDACKWYADKLKGLVAMGVDCFKTD-----------FGERIPTDVQWFDGSDPQKM 436
Query: 490 NNNGVRRPINNKTVPATALHYRNLTEYNTHNLYGLLEAKATHAALINVNGKRPFIL-SRS 548
HN Y + + L + G+ +L +RS
Sbjct: 437 -----------------------------HNHYAYIYNELVWNVLKDTVGEEEAVLFARS 467
Query: 549 TFVGSGKYTAHWTGDNAATWNDLAYSIPSILNFGLFGIPMVGADICGFSGDTTEELCRRW 608
VG+ K+ HW GD A + +A S+ L+ GL G DI GF + +RW
Sbjct: 468 ASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRW 527
Query: 609 IQLGAFYPFARDHSAIGTIRQELYFWDTVAATARKVLGLRYRLLPYFYTLMYEAHMKGTA 668
G +R H + + R + D R L+ R++PY Y A+ +GT
Sbjct: 528 CAFGLLSSHSRLHGS-KSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYREAARANARGTP 586
Query: 669 VARPMFFSFPQDVKTYRIDTQFLIGKGVMVSPVLKSGAVSVDAYFPSGNWFDLFNYSNSV 728
+ R M FP D +D Q+++G VMV+PV A V Y P G W L++
Sbjct: 587 MMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTE-AGDVQFYLPEGRWTHLWHNDELD 645
Query: 729 SLNSGKQIT--LDAPPDHINVHVREGNILAL 757
KQ L P V+VR+ +LAL
Sbjct: 646 GSRWHKQQHGFLSLP-----VYVRDNTLLAL 671
>pdb|2F2H|A Chain A, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|B Chain B, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|C Chain C, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|D Chain D, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|E Chain E, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|F Chain F, Structure Of The Yici Thiosugar Michaelis Complex
Length = 773
Score = 152 bits (384), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 147/571 (25%), Positives = 233/571 (40%), Gaps = 78/571 (13%)
Query: 204 LYGIGEHTKKSFKLTPNDTLTLWNADLASANVDVNLYGSHPFYIDVRSPNGTTHGVLLLN 263
+YG+GE + + + T+ WN D ++ Y + PFY+ R +GVL+ +
Sbjct: 162 VYGLGE--RFTALVRNGQTVETWNRDGGTSTEQA--YKNIPFYMTNRG-----YGVLVNH 212
Query: 264 SNGMDVVYTGDRIS---YKVTGGIIDLYFFAGPSPDSVIQQYTELIGRPAPMPYWSFGFH 320
+ +++S + V ++ + GP+P +V+ +YT GRPA P WSFG
Sbjct: 213 PQCVSFEVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLW 272
Query: 321 QCRYGYENVSD--LKAVVAGYAKAGIPLEVMWTDIDYMDGYK--DFTLDPINFPVNSMQN 376
N + + + + G A+ +PL V D +M ++ DF DP+ FP +
Sbjct: 273 LTTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFP--DPEG 330
Query: 377 FVNTLHQNGQRYVLILDPGISVNETYGTFIRGLKADIFIKR-DGVPYLGEVW-PGKVYYP 434
+ L G + + ++P I + F + +KR DG + + W PG Y
Sbjct: 331 MIRRLKAKGLKICVWINPYIG--QKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIY- 387
Query: 435 DFVNPAAETFW----KGEIQLFRDILPMDGLWLDMNELSNFITSLPTPHSTLD-DPPYKI 489
DF NP A ++ KG + + D D F +PT D P K+
Sbjct: 388 DFTNPDACKWYADKLKGLVAMGVDCFKTD-----------FGERIPTDVQWFDGSDPQKM 436
Query: 490 NNNGVRRPINNKTVPATALHYRNLTEYNTHNLYGLLEAKATHAALINVNGKRPFIL-SRS 548
HN Y + + L + G+ +L +RS
Sbjct: 437 -----------------------------HNHYAYIYNELVWNVLKDTVGEEEAVLFARS 467
Query: 549 TFVGSGKYTAHWTGDNAATWNDLAYSIPSILNFGLFGIPMVGADICGFSGDTTEELCRRW 608
VG+ K+ HW GD A + +A S+ L+ GL G DI GF + +RW
Sbjct: 468 ASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRW 527
Query: 609 IQLGAFYPFARDHSAIGTIRQELYFWDTVAATARKVLGLRYRLLPYFYTLMYEAHMKGTA 668
G +R H + + R + D R L+ R++PY Y A+ +GT
Sbjct: 528 CAFGLLSSHSRLHGS-KSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYREAARANARGTP 586
Query: 669 VARPMFFSFPQDVKTYRIDTQFLIGKGVMVSPVLKSGAVSVDAYFPSGNWFDLFNYSNSV 728
+ R M FP D +D Q+++G VMV+PV A V Y P G W L++
Sbjct: 587 MMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTE-AGDVQFYLPEGRWTHLWHNDELD 645
Query: 729 SLNSGKQIT--LDAPPDHINVHVREGNILAL 757
KQ L P V+VR+ +LAL
Sbjct: 646 GSRWHKQQHGFLSLP-----VYVRDNTLLAL 671
>pdb|1WE5|A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|B Chain B, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|C Chain C, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|D Chain D, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|E Chain E, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|F Chain F, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
Length = 772
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 144/572 (25%), Positives = 222/572 (38%), Gaps = 80/572 (13%)
Query: 204 LYGIGEHTKKSFKLTPNDTLTLWNADLASANVDVNLYGSHPFYIDVRSPNGTTHGVLLLN 263
+YG+GE + + + T+ WN D ++ Y + PFY R +GVL+ +
Sbjct: 162 VYGLGE--RFTALVRNGQTVETWNRDGGTSTEQA--YKNIPFYXTNRG-----YGVLVNH 212
Query: 264 SNGMDVVYTGDRIS---YKVTGGIIDLYFFAGPSPDSVIQQYTELIGRPAPMPYWSFGFH 320
+ +++S + V ++ + GP+P +V+ +YT GRPA P WSFG
Sbjct: 213 PQCVSFEVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLW 272
Query: 321 QCRYGYENVSD--LKAVVAGYAKAGIPLEVMWTDIDYMDGYK--DFTLDPINFPVNSMQN 376
N + + + + G A+ +PL V D + ++ DF DP+ FP +
Sbjct: 273 LTTSFTTNYDEATVNSFIDGXAERNLPLHVFHFDCFWXKAFQWCDFEWDPLTFP--DPEG 330
Query: 377 FVNTLHQNGQRYVLILDPGISVNETYGTFIRGLKADIFIKR-DGVPYLGEVW-PGKVYYP 434
+ L G + + ++P I + F + +KR DG + + W PG Y
Sbjct: 331 XIRRLKAKGLKICVWINPYIG--QKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIY- 387
Query: 435 DFVNPAAETFW----KGEIQLFRDILPMDGLWLDMNELSNFITSLPTPHSTLD--DPPYK 488
DF NP A ++ KG + D D F +PT D DP
Sbjct: 388 DFTNPDACKWYADKLKGLVAXGVDCFKTD-----------FGERIPTDVQWFDGSDPQ-- 434
Query: 489 INNNGVRRPINNKTVPATALHYRNLTEYNTHNLYGLLEAKATHAALINVNGKRPFIL-SR 547
HN Y + + L + G+ +L +R
Sbjct: 435 ----------------------------KXHNHYAYIYNELVWNVLKDTVGEEEAVLFAR 466
Query: 548 STFVGSGKYTAHWTGDNAATWNDLAYSIPSILNFGLFGIPMVGADICGFSGDTTEELCRR 607
S VG+ K+ HW GD A + A S+ L+ GL G DI GF + +R
Sbjct: 467 SASVGAQKFPVHWGGDCYANYESXAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKR 526
Query: 608 WIQLGAFYPFARDHSAIGTIRQELYFWDTVAATARKVLGLRYRLLPYFYTLMYEAHMKGT 667
W G +R H + + R + D R L+ R PY Y A+ +GT
Sbjct: 527 WCAFGLLSSHSRLHGS-KSYRVPWAYDDESCDVVRFFTQLKCRXXPYLYREAARANARGT 585
Query: 668 AVARPMFFSFPQDVKTYRIDTQFLIGKGVMVSPVLKSGAVSVDAYFPSGNWFDLFNYSNS 727
R FP D +D Q+ +G V V+PV A V Y P G W L++
Sbjct: 586 PXXRAXXXEFPDDPACDYLDRQYXLGDNVXVAPVFTE-AGDVQFYLPEGRWTHLWHNDEL 644
Query: 728 VSLNSGKQIT--LDAPPDHINVHVREGNILAL 757
KQ L P V+VR+ +LAL
Sbjct: 645 DGSRWHKQQHGFLSLP-----VYVRDNTLLAL 671
>pdb|2X2H|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2I|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2J|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
Length = 1027
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 158/683 (23%), Positives = 256/683 (37%), Gaps = 131/683 (19%)
Query: 242 SHPFYIDVRSPNGTTHGVLLLNSNGMDVVYTGDRISYKVTGGIIDLYFF--AGPSPDSVI 299
S+ +++D S + G NS D+ Y G + G D +F AG + V+
Sbjct: 274 SYGWFMDNVSQSYMNTGDTTWNSGQEDLAYMGAQY------GPFDQHFVYGAGGGMEXVV 327
Query: 300 QQYTELIG----------RPAPMPYWSFGFHQCRYGY-----------ENVSDLKAVVAG 338
++ L G R P + FGF Q +G EN ++ +V G
Sbjct: 328 TAFSLLQGKEFENQVLNKRSVMPPKYVFGFFQGVFGTSSLLRAHMPAGENNISVEEIVEG 387
Query: 339 YAKAGIPLEVMWTDIDYMDGYKDFTLDPINFPVNSMQNFVNTLHQNGQRYVL--ILDPGI 396
Y P E + D+D D + FT + N V T R V D G+
Sbjct: 388 YQNNNFPFEGLAVDVDMQDNLRVFTTKGEFWTANR----VGTGGDPNNRSVFEWAHDKGL 443
Query: 397 SVNETYGTFIRG-------------LKADIFIKRDGV--------------PYLGEVWPG 429
F+R + ++ K D + Y+G + G
Sbjct: 444 VCQTNITCFLRNDNEGQDYEVNQTLRERQLYTKNDSLTGTDFGMTDDGPSDAYIGHLDYG 503
Query: 430 -----KVYYPDFVNPAAETFWKGEIQLFRDILPMDGLWLDMNELSNFITSLPT--PHSTL 482
+PD+ P +W + I +D +W DM ++P PH
Sbjct: 504 GGVECDALFPDWGRPDVAEWWGNNYKKLFSI-GLDFVWQDM--------TVPAMMPHKIG 554
Query: 483 DDPPYKINNN--GVRRPINNK--------TVPATALHYRN------LTEYNTHNLYGLLE 526
DD K + N P N + V T + Y N +T+ N H Y L E
Sbjct: 555 DDINVKPDGNWPNADDPSNGQYNWKTYHPQVLVTDMRYENHGREPMVTQRNIH-AYTLCE 613
Query: 527 AKATHAALINVNG----KRPFILSRSTFVGSGKYTAHWTGDNAATWNDLAYSIPSILNFG 582
+ + N + +R +I+SR ++G+ + W GDN+ T N + I + +N
Sbjct: 614 STRKEGIVENADTLTKFRRSYIISRGGYIGNQHFGGMWVGDNSTTSNYIQMMIANNINMN 673
Query: 583 LFGIPMVGADICGFSGDTTE--------ELCRRWIQLGAFYPFARDH-------SAIGTI 627
+ +P+VG+DI GF+ E +L R++Q G P+ R+H G
Sbjct: 674 MSCLPLVGSDIGGFTSYDNENQRTPCTGDLMVRYVQAGCLLPWFRNHYDRWIESKDHGKD 733
Query: 628 RQELYFWDTVAATARKVLGLRYRLLPYFYTLMYEAHMKGTAVARPM-FFSFPQDVKTYRI 686
QELY + T RK + RYR YT MY+ G + + ++ +V+ +
Sbjct: 734 YQELYMYPNEMDTLRKFVEFRYRWQEVLYTAMYQNAAFGKPIIKAASMYNNDSNVRRAQN 793
Query: 687 DTQFLIGKG----VMVSPVLKSGAVSVDAYFPS-GNWF----DLFNYSNSVSLNSGKQI- 736
D FL+G ++ +PV+ + + Y P W+ D ++N G +I
Sbjct: 794 D-HFLLGGHDGYRILCAPVVWENSTERELYLPVLTQWYKFGPDFDTKPLEGAMNGGDRIY 852
Query: 737 TLDAPPDHINVHVREGNIL----ALQGEALTTKA-ARKTPFHLLVVVSSKETSTGEVFLD 791
P + VREG IL L GE + + P V + G +LD
Sbjct: 853 NYPVPQSESPIFVREGAILPTRYTLNGENKSLNTYTDEDPLVFEVFPLGNNRADGMCYLD 912
Query: 792 DGEEVEMGKEAGKWSFVRFYSQM 814
DG ++ GK+S V+ ++
Sbjct: 913 DGGVTTNAEDNGKFSVVKVAAEQ 935
>pdb|3RWL|A Chain A, Structure Of P450pyr Hydroxylase
Length = 426
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 17/75 (22%)
Query: 282 GGIIDLYFFAGPSPDSVIQQYTE-LIGRPAPMPYWSFGF--HQCRYGYENVSDLKAVVAG 338
G + +++++G D VI + E +I RP P + SFGF H+C G
Sbjct: 333 GDKVVMWYYSGNRDDEVIDRPEEFIIDRPRPRQHLSFGFGIHRC--------------VG 378
Query: 339 YAKAGIPLEVMWTDI 353
A + L ++W +I
Sbjct: 379 NRLAEMQLRILWEEI 393
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 323 RYGYENVSDLKAVVAGYAKAGIPLEVMWTDIDYMDGYKDFTLDPINFPVNSMQNFVNTLH 382
+ G +NV LK VAG A L+ + + G +D + P NS + ++H
Sbjct: 439 QAGQDNVPILKRSVAGDASESALLKCIELCCGSVQGMRDRNPKIVEIPFNSTNKYQLSIH 498
Query: 383 QNGQ----RYVLIL 392
+N + RY+L++
Sbjct: 499 ENEKSSESRYLLVM 512
>pdb|1RP5|A Chain A, Pbp2x From Streptococcus Pneumoniae Strain 5259 With
Reduced Susceptibility To Beta-Lactam Antibiotics
pdb|1RP5|B Chain B, Pbp2x From Streptococcus Pneumoniae Strain 5259 With
Reduced Susceptibility To Beta-Lactam Antibiotics
Length = 702
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 19/153 (12%)
Query: 419 GVPY---LGEVWPGKVYYPDFVNPAAETFWKG----EIQLFRDILPM--DGLWLDMNELS 469
GVP L + + G++ + VN A F +G + Q+ R + DG+ L+
Sbjct: 374 GVPTRFGLTDEYAGQLPADNIVNIAMSAFGQGISVTQTQMLRAFTAIANDGVMLE----P 429
Query: 470 NFITSLPTPHSTLDDPPYKINNNGVRRPINNKTVPATALHYRNLTEYNTHNLYGLLEAKA 529
FI++L P+ D K V P++ + T H + T YG + +
Sbjct: 430 KFISALYDPN---DQSVRKSQKEIVGNPVSKEAASVTRDH---MVMVGTDPTYGTMYNHS 483
Query: 530 THAALINVNGKRPFILSRSTFVGSGKYTAHWTG 562
T A +NV G+ + S + + K + TG
Sbjct: 484 TGKATVNVPGQNVALKSGTAEIADEKNGGYLTG 516
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,338,227
Number of Sequences: 62578
Number of extensions: 1284784
Number of successful extensions: 3017
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2902
Number of HSP's gapped (non-prelim): 30
length of query: 906
length of database: 14,973,337
effective HSP length: 108
effective length of query: 798
effective length of database: 8,214,913
effective search space: 6555500574
effective search space used: 6555500574
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)