Query 002569
Match_columns 906
No_of_seqs 532 out of 4638
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 02:39:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002569.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002569hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.2E-98 5E-103 875.5 47.1 839 15-888 9-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.3E-62 9.4E-67 604.8 49.1 636 159-858 184-914 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.2E-43 4.7E-48 376.5 20.3 279 164-444 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.9E-23 4E-28 261.1 17.9 370 508-903 109-509 (968)
5 PLN00113 leucine-rich repeat r 99.9 4E-23 8.6E-28 258.1 16.4 365 511-903 159-557 (968)
6 KOG0444 Cytoskeletal regulator 99.8 2.3E-23 5.1E-28 219.9 -7.1 328 495-856 34-381 (1255)
7 KOG4194 Membrane glycoprotein 99.8 1.3E-21 2.9E-26 205.7 2.3 253 513-792 99-356 (873)
8 KOG4194 Membrane glycoprotein 99.8 1.7E-21 3.6E-26 205.0 2.2 314 498-848 107-427 (873)
9 PLN03210 Resistant to P. syrin 99.8 1.4E-19 3E-24 225.9 19.3 355 478-873 489-906 (1153)
10 KOG0444 Cytoskeletal regulator 99.8 3.4E-22 7.4E-27 211.2 -5.3 295 507-843 94-392 (1255)
11 KOG0472 Leucine-rich repeat pr 99.7 6.8E-20 1.5E-24 184.9 -4.2 318 501-848 191-539 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 2.4E-19 5.2E-24 181.0 -8.4 374 503-905 101-540 (565)
13 KOG0617 Ras suppressor protein 99.6 6.9E-18 1.5E-22 150.8 -6.3 164 510-688 27-193 (264)
14 PRK15387 E3 ubiquitin-protein 99.6 3.3E-15 7.2E-20 172.7 13.5 264 485-824 193-456 (788)
15 KOG0618 Serine/threonine phosp 99.6 2.3E-17 5E-22 183.8 -5.8 101 517-619 46-147 (1081)
16 KOG0618 Serine/threonine phosp 99.6 7.1E-17 1.5E-21 179.9 -5.3 69 503-572 55-124 (1081)
17 PRK15370 E3 ubiquitin-protein 99.5 1E-14 2.2E-19 169.9 9.3 239 498-787 183-426 (754)
18 KOG0617 Ras suppressor protein 99.5 5.1E-16 1.1E-20 138.9 -3.0 145 498-646 38-185 (264)
19 PRK15387 E3 ubiquitin-protein 99.5 1.3E-13 2.8E-18 159.7 13.3 254 518-848 203-456 (788)
20 KOG4237 Extracellular matrix p 99.5 1E-14 2.2E-19 147.9 1.2 252 496-763 49-356 (498)
21 PRK04841 transcriptional regul 99.4 1.2E-11 2.7E-16 154.2 25.5 288 158-487 13-332 (903)
22 PRK15370 E3 ubiquitin-protein 99.4 2.8E-13 6E-18 158.1 8.9 221 517-787 179-399 (754)
23 KOG4658 Apoptotic ATPase [Sign 99.3 4.8E-13 1E-17 158.5 4.3 323 496-856 526-866 (889)
24 PRK00411 cdc6 cell division co 99.2 1.4E-09 3.1E-14 121.4 24.1 293 158-468 29-358 (394)
25 KOG4237 Extracellular matrix p 99.2 6.4E-13 1.4E-17 135.0 -3.5 239 524-787 54-333 (498)
26 TIGR03015 pepcterm_ATPase puta 99.2 2.9E-09 6.2E-14 112.3 23.4 177 180-364 42-242 (269)
27 COG2909 MalT ATP-dependent tra 99.2 1.3E-09 2.9E-14 122.5 20.9 288 160-487 20-338 (894)
28 TIGR02928 orc1/cdc6 family rep 99.2 1.5E-08 3.3E-13 111.9 28.5 293 159-468 15-350 (365)
29 PF01637 Arch_ATPase: Archaeal 99.1 4.8E-10 1E-14 115.7 12.5 193 161-359 1-233 (234)
30 PF14580 LRR_9: Leucine-rich r 99.1 5.8E-11 1.3E-15 112.8 4.6 109 531-644 12-123 (175)
31 TIGR00635 ruvB Holliday juncti 99.1 1.5E-09 3.2E-14 116.6 15.8 273 160-468 5-289 (305)
32 cd00116 LRR_RI Leucine-rich re 99.1 3.7E-11 8E-16 130.5 2.4 139 535-681 20-178 (319)
33 cd00116 LRR_RI Leucine-rich re 99.1 3.6E-11 7.7E-16 130.6 2.2 237 513-788 20-290 (319)
34 PRK00080 ruvB Holliday junctio 99.1 1.6E-09 3.5E-14 116.9 14.3 274 159-468 25-310 (328)
35 PF14580 LRR_9: Leucine-rich r 99.0 1.4E-10 3.1E-15 110.1 4.8 128 512-643 15-149 (175)
36 KOG0532 Leucine-rich repeat (L 99.0 8.4E-12 1.8E-16 132.7 -5.2 171 515-705 74-245 (722)
37 PF05729 NACHT: NACHT domain 98.9 7.9E-09 1.7E-13 100.1 11.9 138 182-328 1-163 (166)
38 KOG0532 Leucine-rich repeat (L 98.9 7.2E-11 1.6E-15 125.7 -2.7 136 504-644 109-244 (722)
39 PRK06893 DNA replication initi 98.9 2.6E-08 5.6E-13 101.2 13.2 150 180-362 38-205 (229)
40 COG3899 Predicted ATPase [Gene 98.8 2.7E-08 5.9E-13 119.1 14.8 285 161-466 2-355 (849)
41 COG2256 MGS1 ATPase related to 98.7 1.1E-06 2.4E-11 91.3 20.2 156 175-358 43-210 (436)
42 KOG3207 Beta-tubulin folding c 98.7 2E-09 4.3E-14 111.6 -0.4 210 513-733 118-340 (505)
43 KOG3207 Beta-tubulin folding c 98.7 2.7E-09 5.9E-14 110.6 0.3 109 535-644 118-232 (505)
44 PRK13342 recombination factor 98.7 9.7E-07 2.1E-11 98.3 20.2 176 160-363 13-199 (413)
45 KOG1259 Nischarin, modulator o 98.7 4.1E-09 8.9E-14 103.6 1.2 111 559-685 281-391 (490)
46 COG4886 Leucine-rich repeat (L 98.7 1.4E-08 3E-13 113.6 4.8 107 534-644 112-219 (394)
47 KOG4341 F-box protein containi 98.7 1.7E-09 3.8E-14 111.4 -2.4 106 539-644 139-252 (483)
48 PTZ00112 origin recognition co 98.6 1.6E-06 3.5E-11 98.9 19.6 171 158-330 754-951 (1164)
49 TIGR03420 DnaA_homol_Hda DnaA 98.6 2.3E-07 5E-12 94.9 12.2 165 164-362 22-203 (226)
50 PRK04195 replication factor C 98.6 1.5E-06 3.4E-11 98.7 19.9 181 159-365 14-207 (482)
51 PRK07003 DNA polymerase III su 98.6 1.8E-06 4E-11 98.2 19.2 192 159-361 16-222 (830)
52 KOG1259 Nischarin, modulator o 98.6 7.4E-09 1.6E-13 101.8 0.2 130 513-647 281-412 (490)
53 COG4886 Leucine-rich repeat (L 98.6 3E-08 6.4E-13 111.0 5.0 157 512-683 112-270 (394)
54 PF13855 LRR_8: Leucine rich r 98.6 5.4E-08 1.2E-12 75.8 4.2 60 538-598 1-61 (61)
55 PRK05564 DNA polymerase III su 98.5 2.9E-06 6.3E-11 91.0 17.1 175 160-360 5-190 (313)
56 PRK12402 replication factor C 98.5 3.3E-06 7.2E-11 92.3 17.4 192 159-360 15-226 (337)
57 PRK08727 hypothetical protein; 98.5 1.1E-06 2.4E-11 89.6 12.3 163 161-357 22-201 (233)
58 PRK08084 DNA replication initi 98.5 1.6E-06 3.6E-11 88.4 13.3 170 159-362 23-211 (235)
59 PRK14960 DNA polymerase III su 98.4 1.1E-05 2.3E-10 91.1 19.5 190 159-359 15-218 (702)
60 PRK14949 DNA polymerase III su 98.4 4.3E-06 9.2E-11 97.2 16.8 188 159-360 16-220 (944)
61 KOG4341 F-box protein containi 98.4 1.2E-08 2.6E-13 105.3 -3.5 283 517-852 139-441 (483)
62 COG1474 CDC6 Cdc6-related prot 98.4 1.5E-05 3.2E-10 86.1 19.7 197 159-359 17-237 (366)
63 PRK14961 DNA polymerase III su 98.4 1E-05 2.2E-10 88.4 17.8 189 159-359 16-219 (363)
64 PRK12323 DNA polymerase III su 98.4 4.4E-06 9.5E-11 93.9 14.9 194 159-360 16-225 (700)
65 PF05496 RuvB_N: Holliday junc 98.4 3.7E-06 7.9E-11 81.8 12.4 172 159-364 24-225 (233)
66 PRK14963 DNA polymerase III su 98.4 8.7E-06 1.9E-10 91.8 17.2 189 159-357 14-214 (504)
67 PLN03025 replication factor C 98.4 7.4E-06 1.6E-10 88.1 15.8 177 159-357 13-197 (319)
68 KOG1909 Ran GTPase-activating 98.4 8.7E-08 1.9E-12 97.1 0.8 144 664-823 153-308 (382)
69 PRK13341 recombination factor 98.4 4.8E-06 1E-10 97.5 15.3 170 160-357 29-214 (725)
70 cd01128 rho_factor Transcripti 98.4 6.5E-07 1.4E-11 91.0 6.9 101 172-274 7-114 (249)
71 PRK09087 hypothetical protein; 98.4 5.7E-06 1.2E-10 83.5 13.5 139 180-360 43-195 (226)
72 PF13401 AAA_22: AAA domain; P 98.4 8.9E-07 1.9E-11 81.8 7.0 116 180-297 3-125 (131)
73 PRK00440 rfc replication facto 98.3 1.8E-05 3.9E-10 85.8 18.0 177 159-358 17-201 (319)
74 PF13173 AAA_14: AAA domain 98.3 1.2E-06 2.5E-11 80.3 7.3 117 181-320 2-127 (128)
75 KOG2028 ATPase related to the 98.3 5.5E-06 1.2E-10 84.3 12.5 173 160-355 139-331 (554)
76 cd00009 AAA The AAA+ (ATPases 98.3 4.6E-06 1E-10 78.8 11.7 120 162-299 1-131 (151)
77 PLN03150 hypothetical protein; 98.3 7.6E-07 1.6E-11 104.3 7.3 103 540-644 420-525 (623)
78 PF13855 LRR_8: Leucine rich r 98.3 3.9E-07 8.5E-12 70.9 3.2 57 562-619 1-59 (61)
79 PRK14956 DNA polymerase III su 98.3 1E-05 2.2E-10 88.8 14.9 188 159-357 18-219 (484)
80 PRK05642 DNA replication initi 98.3 6.6E-06 1.4E-10 83.8 12.7 149 181-362 45-210 (234)
81 PRK14957 DNA polymerase III su 98.3 2E-05 4.3E-10 89.0 17.5 178 159-360 16-221 (546)
82 PF13191 AAA_16: AAA ATPase do 98.3 1.6E-06 3.4E-11 85.6 7.9 46 161-206 2-49 (185)
83 TIGR02903 spore_lon_C ATP-depe 98.3 0.00014 3E-09 84.7 25.0 199 159-363 154-398 (615)
84 PF00308 Bac_DnaA: Bacterial d 98.3 7.6E-06 1.7E-10 82.3 12.8 180 159-360 9-208 (219)
85 KOG1909 Ran GTPase-activating 98.3 1.3E-07 2.9E-12 95.7 0.1 87 513-599 27-133 (382)
86 PTZ00202 tuzin; Provisional 98.3 1.3E-05 2.8E-10 85.1 14.3 159 156-328 259-434 (550)
87 PRK06645 DNA polymerase III su 98.3 2E-05 4.4E-10 88.4 16.6 191 159-357 21-226 (507)
88 PRK09112 DNA polymerase III su 98.3 2.6E-05 5.7E-10 83.8 16.8 194 159-361 23-241 (351)
89 KOG2120 SCF ubiquitin ligase, 98.3 5E-08 1.1E-12 96.2 -3.7 81 563-644 186-270 (419)
90 PRK08691 DNA polymerase III su 98.3 1.5E-05 3.2E-10 90.9 15.3 189 159-360 16-220 (709)
91 PRK07471 DNA polymerase III su 98.2 5.3E-05 1.2E-09 82.0 18.6 193 159-361 19-239 (365)
92 KOG2120 SCF ubiquitin ligase, 98.2 4.6E-08 9.9E-13 96.5 -4.6 57 587-644 186-244 (419)
93 PRK07994 DNA polymerase III su 98.2 2.2E-05 4.8E-10 90.1 16.0 192 159-361 16-221 (647)
94 PF14516 AAA_35: AAA-like doma 98.2 0.00076 1.7E-08 72.6 26.7 198 158-367 10-246 (331)
95 PRK09376 rho transcription ter 98.2 2.4E-06 5.1E-11 90.3 7.0 100 170-274 158-267 (416)
96 PRK07940 DNA polymerase III su 98.2 4.6E-05 9.9E-10 83.2 17.0 183 160-360 6-213 (394)
97 PRK14951 DNA polymerase III su 98.2 3.1E-05 6.7E-10 88.7 16.1 194 159-360 16-225 (618)
98 PRK14958 DNA polymerase III su 98.2 2.7E-05 5.9E-10 88.1 15.6 178 159-359 16-219 (509)
99 TIGR02397 dnaX_nterm DNA polym 98.2 5.9E-05 1.3E-09 83.0 18.0 179 159-361 14-219 (355)
100 KOG1859 Leucine-rich repeat pr 98.2 3.4E-08 7.3E-13 108.5 -7.4 180 509-705 102-290 (1096)
101 PRK14962 DNA polymerase III su 98.2 5.7E-05 1.2E-09 84.6 17.8 178 159-364 14-223 (472)
102 PRK05896 DNA polymerase III su 98.2 3.6E-05 7.7E-10 87.0 15.6 193 159-362 16-223 (605)
103 KOG0531 Protein phosphatase 1, 98.1 2E-07 4.4E-12 104.3 -2.8 105 534-644 91-196 (414)
104 PLN03150 hypothetical protein; 98.1 3.5E-06 7.6E-11 98.7 7.3 110 517-626 419-532 (623)
105 PRK08903 DnaA regulatory inact 98.1 2.3E-05 5E-10 80.0 12.4 166 162-364 22-203 (227)
106 KOG0531 Protein phosphatase 1, 98.1 3.2E-07 7E-12 102.7 -1.6 126 512-644 91-218 (414)
107 PRK14969 DNA polymerase III su 98.1 6.9E-05 1.5E-09 85.5 16.5 172 159-357 16-217 (527)
108 TIGR01242 26Sp45 26S proteasom 98.1 1.1E-05 2.3E-10 88.6 9.6 168 159-354 122-328 (364)
109 KOG2982 Uncharacterized conser 98.1 1.1E-06 2.4E-11 86.9 1.4 208 560-784 69-287 (418)
110 TIGR00678 holB DNA polymerase 98.1 0.00013 2.9E-09 71.9 16.2 156 170-356 3-187 (188)
111 PRK09111 DNA polymerase III su 98.1 9.8E-05 2.1E-09 84.9 17.1 193 159-360 24-233 (598)
112 PRK07764 DNA polymerase III su 98.1 0.00011 2.4E-09 87.5 17.9 187 159-357 15-218 (824)
113 PRK14970 DNA polymerase III su 98.1 0.00013 2.9E-09 80.4 17.5 177 159-357 17-206 (367)
114 COG2255 RuvB Holliday junction 98.0 0.00056 1.2E-08 68.2 19.3 172 159-364 26-227 (332)
115 PRK14964 DNA polymerase III su 98.0 0.00013 2.7E-09 81.4 16.5 176 159-358 13-215 (491)
116 PRK14950 DNA polymerase III su 98.0 0.00013 2.9E-09 84.7 17.3 191 159-360 16-221 (585)
117 PRK14959 DNA polymerase III su 98.0 0.00027 5.7E-09 80.6 19.0 194 159-364 16-225 (624)
118 PRK14955 DNA polymerase III su 98.0 8.5E-05 1.8E-09 82.2 15.0 196 159-359 16-227 (397)
119 PF12799 LRR_4: Leucine Rich r 98.0 5.3E-06 1.2E-10 58.9 3.1 38 563-601 2-39 (44)
120 PRK14087 dnaA chromosomal repl 98.0 4.7E-05 1E-09 85.1 12.3 164 181-362 141-321 (450)
121 PRK14088 dnaA chromosomal repl 98.0 0.00013 2.8E-09 81.5 15.7 176 160-357 107-302 (440)
122 PF05621 TniB: Bacterial TniB 98.0 0.00034 7.5E-09 71.7 17.0 192 167-360 45-261 (302)
123 PRK08451 DNA polymerase III su 98.0 0.00028 6.1E-09 79.4 17.9 191 159-360 14-218 (535)
124 TIGR00767 rho transcription te 98.0 3.1E-05 6.7E-10 82.6 9.7 93 180-274 167-266 (415)
125 PRK14971 DNA polymerase III su 98.0 0.00026 5.6E-09 82.1 18.1 177 159-358 17-220 (614)
126 PRK14952 DNA polymerase III su 98.0 0.0002 4.4E-09 81.8 16.8 195 159-364 13-224 (584)
127 PRK07133 DNA polymerase III su 98.0 0.00021 4.6E-09 82.6 16.9 184 159-359 18-218 (725)
128 PRK14953 DNA polymerase III su 98.0 0.00027 5.9E-09 79.6 17.6 176 159-361 16-221 (486)
129 KOG4579 Leucine-rich repeat (L 98.0 8.1E-07 1.8E-11 77.7 -2.0 109 518-628 29-141 (177)
130 PF12799 LRR_4: Leucine Rich r 97.9 8.6E-06 1.9E-10 57.9 3.4 41 586-627 1-41 (44)
131 PRK14954 DNA polymerase III su 97.9 0.00035 7.7E-09 80.5 18.1 195 159-357 16-225 (620)
132 PRK06305 DNA polymerase III su 97.9 0.00036 7.9E-09 78.1 17.6 174 159-357 17-219 (451)
133 TIGR00362 DnaA chromosomal rep 97.9 0.00028 6E-09 78.8 16.6 156 181-358 136-308 (405)
134 PRK14948 DNA polymerase III su 97.9 0.00028 6.1E-09 81.8 17.0 194 159-361 16-223 (620)
135 PRK06620 hypothetical protein; 97.9 5.8E-05 1.3E-09 75.5 9.8 133 182-358 45-187 (214)
136 PRK03992 proteasome-activating 97.9 0.0003 6.4E-09 77.6 15.7 167 160-354 132-337 (389)
137 PRK00149 dnaA chromosomal repl 97.9 0.00014 3E-09 82.3 13.0 155 181-357 148-319 (450)
138 PHA02544 44 clamp loader, smal 97.8 0.00031 6.6E-09 75.9 15.2 143 159-326 21-171 (316)
139 KOG2227 Pre-initiation complex 97.8 0.0015 3.3E-08 69.7 18.8 194 159-358 150-366 (529)
140 PF05673 DUF815: Protein of un 97.8 0.00069 1.5E-08 67.2 14.8 47 159-205 27-76 (249)
141 PRK14086 dnaA chromosomal repl 97.8 0.00077 1.7E-08 76.5 17.1 155 181-357 314-485 (617)
142 COG3903 Predicted ATPase [Gene 97.8 3.6E-05 7.8E-10 81.0 6.1 230 180-427 13-258 (414)
143 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00031 6.7E-09 84.8 14.8 178 159-353 187-389 (852)
144 PRK12422 chromosomal replicati 97.8 0.00028 6.1E-09 78.6 13.4 150 181-354 141-307 (445)
145 PRK11331 5-methylcytosine-spec 97.8 0.00017 3.6E-09 78.5 11.1 68 160-231 176-243 (459)
146 PRK15386 type III secretion pr 97.8 3.4E-05 7.4E-10 82.7 5.8 60 515-579 51-111 (426)
147 PRK06647 DNA polymerase III su 97.8 0.00068 1.5E-08 77.7 16.7 191 159-360 16-220 (563)
148 KOG1859 Leucine-rich repeat pr 97.7 6.7E-07 1.5E-11 98.6 -7.5 126 514-644 162-289 (1096)
149 PRK14965 DNA polymerase III su 97.7 0.00062 1.4E-08 78.8 15.7 190 159-360 16-221 (576)
150 PTZ00361 26 proteosome regulat 97.7 0.0004 8.6E-09 76.6 12.9 168 160-354 184-389 (438)
151 PRK15386 type III secretion pr 97.7 6.9E-05 1.5E-09 80.4 6.5 60 537-602 51-111 (426)
152 TIGR02881 spore_V_K stage V sp 97.7 0.00033 7.1E-09 73.0 11.5 151 160-331 7-194 (261)
153 PRK05563 DNA polymerase III su 97.7 0.0016 3.4E-08 75.1 17.9 188 159-358 16-218 (559)
154 PRK07399 DNA polymerase III su 97.7 0.0044 9.6E-08 65.9 19.9 193 160-360 5-221 (314)
155 KOG2543 Origin recognition com 97.7 0.00036 7.7E-09 72.4 11.1 164 158-327 5-192 (438)
156 KOG3665 ZYG-1-like serine/thre 97.6 1.5E-05 3.2E-10 93.1 1.1 137 538-681 122-263 (699)
157 KOG1644 U2-associated snRNP A' 97.6 5.4E-05 1.2E-09 71.3 4.5 101 517-618 43-149 (233)
158 PTZ00454 26S protease regulato 97.6 0.00068 1.5E-08 74.3 13.8 168 160-354 146-351 (398)
159 COG3267 ExeA Type II secretory 97.6 0.0045 9.7E-08 61.2 17.7 177 180-362 50-247 (269)
160 TIGR02639 ClpA ATP-dependent C 97.6 0.00028 6E-09 84.6 11.0 154 160-329 183-359 (731)
161 PRK05707 DNA polymerase III su 97.6 0.0021 4.5E-08 68.8 16.1 165 180-360 21-203 (328)
162 PRK10536 hypothetical protein; 97.6 0.002 4.4E-08 64.8 14.9 130 161-297 57-212 (262)
163 KOG3665 ZYG-1-like serine/thre 97.6 3.1E-05 6.7E-10 90.5 2.2 128 515-644 121-260 (699)
164 KOG0989 Replication factor C, 97.5 0.00098 2.1E-08 67.2 11.4 186 159-362 36-233 (346)
165 TIGR02880 cbbX_cfxQ probable R 97.5 0.00092 2E-08 70.2 12.0 129 183-330 60-210 (284)
166 CHL00181 cbbX CbbX; Provisiona 97.5 0.0015 3.3E-08 68.5 13.6 131 182-331 60-212 (287)
167 CHL00095 clpC Clp protease ATP 97.4 0.00046 1E-08 83.8 10.3 177 160-352 180-379 (821)
168 TIGR03689 pup_AAA proteasome A 97.4 0.0012 2.7E-08 73.9 12.2 159 160-330 183-380 (512)
169 PRK08769 DNA polymerase III su 97.4 0.0073 1.6E-07 63.9 17.3 174 166-361 11-209 (319)
170 COG0593 DnaA ATPase involved i 97.4 0.0014 3.1E-08 70.6 11.8 146 180-350 112-276 (408)
171 PRK08116 hypothetical protein; 97.4 0.00039 8.5E-09 72.2 7.2 98 181-296 114-219 (268)
172 KOG4579 Leucine-rich repeat (L 97.3 3.1E-05 6.7E-10 68.0 -1.0 91 514-606 51-143 (177)
173 PRK10865 protein disaggregatio 97.3 0.0016 3.5E-08 79.0 12.9 152 160-328 179-354 (857)
174 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0025 5.4E-08 77.8 14.5 152 160-329 174-350 (852)
175 PRK08118 topology modulation p 97.3 0.00018 3.8E-09 69.1 3.5 36 182-217 2-37 (167)
176 TIGR01241 FtsH_fam ATP-depende 97.3 0.0035 7.7E-08 71.8 14.1 173 160-359 56-266 (495)
177 KOG1644 U2-associated snRNP A' 97.3 0.00028 6.1E-09 66.6 4.1 102 564-677 44-149 (233)
178 PRK11034 clpA ATP-dependent Cl 97.2 0.0012 2.7E-08 78.0 10.1 153 160-328 187-362 (758)
179 PRK06871 DNA polymerase III su 97.2 0.018 4E-07 61.1 17.6 175 167-358 10-201 (325)
180 PRK08058 DNA polymerase III su 97.2 0.012 2.6E-07 63.3 16.6 159 161-327 7-181 (329)
181 PRK07261 topology modulation p 97.2 0.001 2.2E-08 64.1 7.5 67 183-274 2-68 (171)
182 CHL00176 ftsH cell division pr 97.2 0.0051 1.1E-07 71.6 14.4 168 159-353 183-387 (638)
183 COG1222 RPT1 ATP-dependent 26S 97.2 0.024 5.1E-07 58.9 17.3 193 160-380 152-392 (406)
184 COG2812 DnaX DNA polymerase II 97.2 0.0021 4.6E-08 71.5 10.7 185 159-355 16-215 (515)
185 PF10443 RNA12: RNA12 protein; 97.2 0.025 5.4E-07 61.0 18.2 198 164-370 1-288 (431)
186 KOG2123 Uncharacterized conser 97.2 3.6E-05 7.8E-10 75.8 -2.7 101 537-641 18-124 (388)
187 KOG2123 Uncharacterized conser 97.2 3.2E-05 7E-10 76.1 -3.2 106 560-674 17-123 (388)
188 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0059 1.3E-07 67.3 13.5 92 160-274 191-293 (802)
189 TIGR00763 lon ATP-dependent pr 97.2 0.021 4.5E-07 69.2 19.8 47 159-205 320-371 (775)
190 smart00382 AAA ATPases associa 97.1 0.0016 3.4E-08 60.7 8.3 88 181-275 2-90 (148)
191 PRK12608 transcription termina 97.1 0.003 6.4E-08 67.3 10.6 106 167-274 119-231 (380)
192 PRK12377 putative replication 97.1 0.002 4.4E-08 65.6 9.0 74 180-273 100-173 (248)
193 PF02562 PhoH: PhoH-like prote 97.1 0.002 4.4E-08 63.0 8.5 127 163-296 4-154 (205)
194 KOG2982 Uncharacterized conser 97.1 0.00016 3.5E-09 72.0 0.9 202 520-733 49-263 (418)
195 PF04665 Pox_A32: Poxvirus A32 97.1 0.0014 3.1E-08 65.6 7.4 37 181-220 13-49 (241)
196 PF00004 AAA: ATPase family as 97.1 0.0012 2.5E-08 60.9 6.4 22 184-205 1-22 (132)
197 COG0466 Lon ATP-dependent Lon 97.1 0.0076 1.7E-07 68.1 13.6 154 160-328 324-508 (782)
198 PRK08181 transposase; Validate 97.1 0.0021 4.5E-08 66.4 8.7 72 181-273 106-177 (269)
199 KOG2004 Mitochondrial ATP-depe 97.1 0.038 8.3E-07 62.4 18.7 151 160-328 412-596 (906)
200 PF13177 DNA_pol3_delta2: DNA 97.0 0.01 2.2E-07 56.6 12.6 43 163-205 1-43 (162)
201 COG5238 RNA1 Ran GTPase-activa 97.0 0.00023 5E-09 70.0 1.3 154 604-763 87-252 (388)
202 KOG0991 Replication factor C, 97.0 0.0029 6.4E-08 61.0 8.1 46 159-205 27-72 (333)
203 PRK06090 DNA polymerase III su 97.0 0.037 8E-07 58.6 17.2 174 166-360 10-201 (319)
204 TIGR00602 rad24 checkpoint pro 97.0 0.0095 2.1E-07 68.8 13.7 47 159-205 84-134 (637)
205 PRK10787 DNA-binding ATP-depen 97.0 0.015 3.3E-07 69.6 15.9 156 159-329 322-507 (784)
206 KOG0741 AAA+-type ATPase [Post 96.9 0.016 3.5E-07 62.8 13.6 140 180-350 537-704 (744)
207 COG0542 clpA ATP-binding subun 96.9 0.022 4.7E-07 66.4 15.5 106 159-275 491-605 (786)
208 TIGR02640 gas_vesic_GvpN gas v 96.9 0.025 5.4E-07 58.8 14.8 56 166-230 9-64 (262)
209 COG1373 Predicted ATPase (AAA+ 96.9 0.015 3.2E-07 64.2 13.7 133 165-324 23-163 (398)
210 KOG1514 Origin recognition com 96.8 0.039 8.5E-07 62.3 16.5 194 160-360 397-621 (767)
211 PRK06835 DNA replication prote 96.8 0.056 1.2E-06 57.7 17.4 37 181-220 183-219 (329)
212 PRK07993 DNA polymerase III su 96.8 0.046 1E-06 58.7 16.6 178 166-360 9-204 (334)
213 COG1484 DnaC DNA replication p 96.8 0.004 8.6E-08 64.0 8.1 91 164-274 88-178 (254)
214 PRK04296 thymidine kinase; Pro 96.8 0.0018 3.9E-08 63.7 5.2 113 182-300 3-118 (190)
215 PRK10865 protein disaggregatio 96.7 0.15 3.2E-06 62.3 22.2 61 159-222 568-636 (857)
216 KOG2739 Leucine-rich acidic nu 96.7 0.00073 1.6E-08 66.8 2.0 34 515-548 42-75 (260)
217 KOG2228 Origin recognition com 96.7 0.015 3.2E-07 59.7 11.1 165 160-329 25-220 (408)
218 PRK06921 hypothetical protein; 96.7 0.0027 5.9E-08 65.8 6.1 39 180-220 116-154 (266)
219 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0024 5.2E-08 67.7 5.5 46 160-205 52-102 (361)
220 PF00448 SRP54: SRP54-type pro 96.7 0.0068 1.5E-07 59.7 8.4 89 181-272 1-92 (196)
221 KOG2739 Leucine-rich acidic nu 96.7 0.00066 1.4E-08 67.2 1.2 105 536-643 41-152 (260)
222 KOG1947 Leucine rich repeat pr 96.7 0.00044 9.6E-09 79.8 -0.0 39 815-853 403-443 (482)
223 TIGR01243 CDC48 AAA family ATP 96.6 0.035 7.6E-07 67.0 15.9 168 160-354 454-657 (733)
224 PF07693 KAP_NTPase: KAP famil 96.6 0.06 1.3E-06 58.3 16.4 41 165-205 2-44 (325)
225 cd01120 RecA-like_NTPases RecA 96.6 0.014 2.9E-07 56.0 9.7 39 183-224 1-39 (165)
226 PRK09361 radB DNA repair and r 96.6 0.0094 2E-07 60.7 8.9 47 179-229 21-67 (225)
227 PF13207 AAA_17: AAA domain; P 96.5 0.002 4.3E-08 58.3 3.5 23 183-205 1-23 (121)
228 PF08423 Rad51: Rad51; InterP 96.5 0.0096 2.1E-07 61.4 8.8 92 180-272 37-142 (256)
229 PF01695 IstB_IS21: IstB-like 96.5 0.0034 7.4E-08 60.8 5.1 74 180-274 46-119 (178)
230 TIGR01243 CDC48 AAA family ATP 96.5 0.026 5.7E-07 68.1 13.7 170 160-356 179-383 (733)
231 cd00983 recA RecA is a bacter 96.5 0.0073 1.6E-07 63.7 7.7 87 179-273 53-143 (325)
232 PHA00729 NTP-binding motif con 96.5 0.012 2.5E-07 58.4 8.7 35 170-205 7-41 (226)
233 PRK06526 transposase; Provisio 96.5 0.0043 9.3E-08 63.7 5.9 26 180-205 97-122 (254)
234 TIGR02012 tigrfam_recA protein 96.5 0.0077 1.7E-07 63.5 7.8 87 179-273 53-143 (321)
235 PRK04132 replication factor C 96.5 0.056 1.2E-06 64.5 15.7 150 189-360 574-731 (846)
236 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.017 3.7E-07 59.3 10.2 93 179-273 17-125 (235)
237 KOG0733 Nuclear AAA ATPase (VC 96.5 0.11 2.4E-06 57.7 16.3 150 180-354 544-718 (802)
238 cd01131 PilT Pilus retraction 96.5 0.0044 9.6E-08 61.4 5.5 105 182-298 2-109 (198)
239 COG0470 HolB ATPase involved i 96.4 0.028 6.1E-07 60.9 12.3 136 160-314 2-167 (325)
240 TIGR02639 ClpA ATP-dependent C 96.4 0.02 4.4E-07 68.8 12.0 58 159-222 454-519 (731)
241 cd01393 recA_like RecA is a b 96.4 0.019 4.2E-07 58.5 10.2 91 179-273 17-124 (226)
242 PRK09183 transposase/IS protei 96.4 0.009 2E-07 61.8 7.7 26 180-205 101-126 (259)
243 TIGR02237 recomb_radB DNA repa 96.4 0.016 3.4E-07 58.3 9.1 49 179-231 10-58 (209)
244 PRK12727 flagellar biosynthesi 96.4 0.17 3.7E-06 56.6 17.6 89 180-273 349-438 (559)
245 PRK09354 recA recombinase A; P 96.4 0.01 2.2E-07 63.1 7.9 87 179-273 58-148 (349)
246 TIGR02238 recomb_DMC1 meiotic 96.3 0.02 4.4E-07 60.7 10.1 60 179-240 94-157 (313)
247 PRK07952 DNA replication prote 96.3 0.026 5.7E-07 57.4 10.4 89 167-274 84-173 (244)
248 PRK06964 DNA polymerase III su 96.3 0.22 4.9E-06 53.3 17.7 89 262-361 131-226 (342)
249 cd01394 radB RadB. The archaea 96.3 0.029 6.2E-07 56.8 10.7 44 179-225 17-60 (218)
250 PLN03187 meiotic recombination 96.3 0.022 4.7E-07 61.0 9.9 61 179-240 124-187 (344)
251 TIGR02902 spore_lonB ATP-depen 96.3 0.047 1E-06 62.8 13.4 45 160-205 66-110 (531)
252 KOG0743 AAA+-type ATPase [Post 96.3 0.73 1.6E-05 50.0 20.9 148 181-365 235-414 (457)
253 PRK05541 adenylylsulfate kinas 96.3 0.0096 2.1E-07 57.9 6.6 37 180-219 6-42 (176)
254 KOG0744 AAA+-type ATPase [Post 96.2 0.02 4.3E-07 58.3 8.4 81 181-274 177-261 (423)
255 PRK06696 uridine kinase; Valid 96.2 0.0073 1.6E-07 61.2 5.6 43 163-205 2-46 (223)
256 COG1223 Predicted ATPase (AAA+ 96.2 0.053 1.2E-06 53.5 10.9 168 159-354 121-319 (368)
257 COG2607 Predicted ATPase (AAA+ 96.2 0.029 6.3E-07 54.9 8.9 47 159-205 60-109 (287)
258 COG1875 NYN ribonuclease and A 96.2 0.014 3E-07 60.7 7.1 128 163-296 228-386 (436)
259 cd01133 F1-ATPase_beta F1 ATP 96.1 0.036 7.9E-07 56.9 10.1 92 180-274 68-174 (274)
260 KOG1969 DNA replication checkp 96.1 0.013 2.9E-07 66.1 7.3 73 179-274 324-398 (877)
261 TIGR03346 chaperone_ClpB ATP-d 96.1 0.025 5.5E-07 69.1 10.3 62 159-223 565-634 (852)
262 CHL00095 clpC Clp protease ATP 96.0 0.025 5.4E-07 69.0 10.1 105 159-274 509-622 (821)
263 TIGR02858 spore_III_AA stage I 96.0 0.045 9.8E-07 56.6 10.5 128 168-300 98-231 (270)
264 PRK08939 primosomal protein Dn 96.0 0.036 7.8E-07 58.7 10.0 113 163-296 135-259 (306)
265 CHL00195 ycf46 Ycf46; Provisio 96.0 0.11 2.4E-06 58.7 14.2 170 160-354 229-429 (489)
266 PF13306 LRR_5: Leucine rich r 96.0 0.017 3.7E-07 52.8 6.6 96 534-636 31-128 (129)
267 KOG0735 AAA+-type ATPase [Post 96.0 0.017 3.7E-07 65.0 7.4 73 180-273 430-504 (952)
268 TIGR02239 recomb_RAD51 DNA rep 96.0 0.036 7.7E-07 59.1 9.7 60 179-240 94-157 (316)
269 COG0572 Udk Uridine kinase [Nu 96.0 0.02 4.3E-07 56.1 7.0 79 180-264 7-85 (218)
270 COG4608 AppF ABC-type oligopep 95.9 0.038 8.2E-07 55.8 9.0 122 180-305 38-177 (268)
271 KOG2035 Replication factor C, 95.9 0.42 9E-06 48.1 15.7 204 161-383 15-261 (351)
272 PRK04301 radA DNA repair and r 95.9 0.058 1.3E-06 57.9 11.1 59 179-239 100-162 (317)
273 TIGR03877 thermo_KaiC_1 KaiC d 95.9 0.051 1.1E-06 55.6 10.2 50 179-233 19-68 (237)
274 PF00485 PRK: Phosphoribulokin 95.9 0.067 1.5E-06 52.9 10.6 81 183-266 1-86 (194)
275 PF13604 AAA_30: AAA domain; P 95.9 0.029 6.3E-07 55.4 8.0 114 168-295 6-128 (196)
276 KOG0652 26S proteasome regulat 95.9 0.16 3.5E-06 50.1 12.6 54 152-205 162-229 (424)
277 PLN00020 ribulose bisphosphate 95.8 0.014 2.9E-07 61.7 5.6 26 180-205 147-172 (413)
278 PF00560 LRR_1: Leucine Rich R 95.8 0.004 8.7E-08 36.6 1.0 18 564-582 2-19 (22)
279 PRK00771 signal recognition pa 95.8 0.061 1.3E-06 59.6 10.9 89 180-272 94-184 (437)
280 KOG0731 AAA+-type ATPase conta 95.8 0.22 4.8E-06 57.9 15.4 171 160-357 312-521 (774)
281 COG5238 RNA1 Ran GTPase-activa 95.8 0.0099 2.2E-07 58.9 4.1 143 582-731 88-254 (388)
282 cd01121 Sms Sms (bacterial rad 95.8 0.037 8E-07 60.2 9.0 85 180-273 81-168 (372)
283 PF00006 ATP-synt_ab: ATP synt 95.8 0.045 9.8E-07 54.4 8.8 96 171-273 5-115 (215)
284 KOG0730 AAA+-type ATPase [Post 95.8 0.21 4.5E-06 56.4 14.6 142 179-343 466-630 (693)
285 cd03115 SRP The signal recogni 95.8 0.037 8E-07 53.6 8.2 89 183-274 2-93 (173)
286 TIGR03499 FlhF flagellar biosy 95.7 0.045 9.7E-07 57.5 9.3 88 180-272 193-281 (282)
287 PRK06067 flagellar accessory p 95.7 0.062 1.3E-06 55.0 10.2 89 179-273 23-130 (234)
288 PF10236 DAP3: Mitochondrial r 95.7 0.49 1.1E-05 50.4 17.1 49 309-357 258-306 (309)
289 PLN03186 DNA repair protein RA 95.7 0.073 1.6E-06 57.1 10.8 60 179-240 121-184 (342)
290 PRK13695 putative NTPase; Prov 95.7 0.018 3.9E-07 55.9 5.7 23 183-205 2-24 (174)
291 TIGR03345 VI_ClpV1 type VI sec 95.7 0.028 6.2E-07 68.2 8.5 47 159-205 566-620 (852)
292 KOG1947 Leucine rich repeat pr 95.7 0.0024 5.3E-08 73.6 -0.7 120 606-732 185-308 (482)
293 PRK10733 hflB ATP-dependent me 95.7 0.14 3.1E-06 60.5 13.9 167 160-353 153-356 (644)
294 PRK08699 DNA polymerase III su 95.6 0.18 3.9E-06 53.9 13.4 26 180-205 20-45 (325)
295 TIGR00959 ffh signal recogniti 95.6 0.053 1.2E-06 59.9 9.5 92 180-273 98-192 (428)
296 PRK06547 hypothetical protein; 95.5 0.02 4.4E-07 55.0 5.2 33 172-205 7-39 (172)
297 PRK10867 signal recognition pa 95.5 0.057 1.2E-06 59.7 9.4 26 180-205 99-124 (433)
298 COG1102 Cmk Cytidylate kinase 95.5 0.019 4.2E-07 52.5 4.6 44 183-240 2-45 (179)
299 COG1136 SalX ABC-type antimicr 95.5 0.071 1.5E-06 52.9 9.0 121 180-304 30-209 (226)
300 TIGR02236 recomb_radA DNA repa 95.5 0.094 2E-06 56.2 10.8 59 179-239 93-155 (310)
301 KOG0728 26S proteasome regulat 95.5 0.31 6.7E-06 47.9 12.8 194 160-377 147-385 (404)
302 PRK15455 PrkA family serine pr 95.5 0.017 3.8E-07 64.5 5.0 46 160-205 77-127 (644)
303 PTZ00035 Rad51 protein; Provis 95.4 0.15 3.2E-06 54.9 12.0 60 179-240 116-179 (337)
304 KOG0734 AAA+-type ATPase conta 95.4 0.033 7.1E-07 60.6 6.8 46 160-205 305-361 (752)
305 PRK07667 uridine kinase; Provi 95.4 0.022 4.8E-07 56.2 5.3 38 168-205 3-41 (193)
306 PF00560 LRR_1: Leucine Rich R 95.4 0.009 2E-07 35.1 1.5 22 587-608 1-22 (22)
307 COG1618 Predicted nucleotide k 95.4 0.019 4.1E-07 52.6 4.2 25 181-205 5-29 (179)
308 PRK11034 clpA ATP-dependent Cl 95.4 0.047 1E-06 65.0 8.7 46 160-205 459-512 (758)
309 PRK13531 regulatory ATPase Rav 95.4 0.024 5.3E-07 62.6 5.7 44 159-205 20-63 (498)
310 PRK04328 hypothetical protein; 95.4 0.076 1.7E-06 54.7 9.1 55 179-239 21-75 (249)
311 KOG1532 GTPase XAB1, interacts 95.4 0.07 1.5E-06 53.1 8.2 61 180-241 18-87 (366)
312 PF00154 RecA: recA bacterial 95.3 0.061 1.3E-06 56.7 8.4 88 179-274 51-142 (322)
313 PTZ00301 uridine kinase; Provi 95.3 0.03 6.4E-07 55.7 5.8 25 181-205 3-27 (210)
314 COG0541 Ffh Signal recognition 95.3 0.88 1.9E-05 49.2 16.8 58 180-240 99-157 (451)
315 PRK14722 flhF flagellar biosyn 95.3 0.066 1.4E-06 57.8 8.8 89 180-273 136-225 (374)
316 TIGR03881 KaiC_arch_4 KaiC dom 95.3 0.13 2.8E-06 52.5 10.6 42 179-223 18-59 (229)
317 PF13238 AAA_18: AAA domain; P 95.2 0.016 3.4E-07 53.0 3.3 22 184-205 1-22 (129)
318 cd03238 ABC_UvrA The excision 95.2 0.094 2E-06 50.6 8.8 113 180-302 20-153 (176)
319 cd02019 NK Nucleoside/nucleoti 95.2 0.017 3.8E-07 45.9 2.9 23 183-205 1-23 (69)
320 COG0468 RecA RecA/RadA recombi 95.2 0.088 1.9E-06 54.3 8.8 91 179-273 58-151 (279)
321 cd01129 PulE-GspE PulE/GspE Th 95.2 0.069 1.5E-06 55.4 8.1 119 162-295 62-180 (264)
322 PRK05480 uridine/cytidine kina 95.2 0.019 4.1E-07 57.6 3.9 26 180-205 5-30 (209)
323 TIGR00064 ftsY signal recognit 95.2 0.12 2.5E-06 54.0 9.8 90 180-273 71-164 (272)
324 PF13306 LRR_5: Leucine rich r 95.2 0.056 1.2E-06 49.3 6.7 104 533-643 7-112 (129)
325 PRK11889 flhF flagellar biosyn 95.1 0.11 2.3E-06 55.9 9.5 89 180-273 240-330 (436)
326 PRK08233 hypothetical protein; 95.1 0.019 4.1E-07 56.2 3.7 25 181-205 3-27 (182)
327 PRK10463 hydrogenase nickel in 95.1 0.1 2.3E-06 54.0 9.0 27 179-205 102-128 (290)
328 PRK09519 recA DNA recombinatio 95.1 0.092 2E-06 61.9 9.5 87 179-273 58-148 (790)
329 cd00561 CobA_CobO_BtuR ATP:cor 95.1 0.12 2.7E-06 48.4 8.6 114 182-299 3-139 (159)
330 COG1066 Sms Predicted ATP-depe 95.0 0.091 2E-06 55.9 8.5 85 180-274 92-179 (456)
331 PRK08972 fliI flagellum-specif 95.0 0.053 1.2E-06 59.4 7.1 90 180-274 161-263 (444)
332 COG1126 GlnQ ABC-type polar am 95.0 0.18 4E-06 48.9 9.7 26 180-205 27-52 (240)
333 TIGR00235 udk uridine kinase. 95.0 0.022 4.7E-07 57.1 3.7 26 180-205 5-30 (207)
334 TIGR00554 panK_bact pantothena 95.0 0.16 3.4E-06 53.1 10.0 79 180-263 61-141 (290)
335 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.0 0.089 1.9E-06 49.1 7.5 26 180-205 25-50 (144)
336 cd03247 ABCC_cytochrome_bd The 94.9 0.14 3E-06 49.8 9.2 26 180-205 27-52 (178)
337 PF07728 AAA_5: AAA domain (dy 94.9 0.057 1.2E-06 50.1 6.2 42 184-231 2-43 (139)
338 PRK12678 transcription termina 94.9 0.036 7.9E-07 61.8 5.4 100 170-274 405-514 (672)
339 PRK09270 nucleoside triphospha 94.9 0.044 9.5E-07 55.8 5.8 29 177-205 29-57 (229)
340 COG1121 ZnuC ABC-type Mn/Zn tr 94.9 0.12 2.5E-06 52.3 8.5 121 180-300 29-201 (254)
341 cd03223 ABCD_peroxisomal_ALDP 94.9 0.17 3.7E-06 48.5 9.5 26 180-205 26-51 (166)
342 PRK07132 DNA polymerase III su 94.9 1.4 3E-05 46.5 16.8 165 168-359 5-184 (299)
343 cd02025 PanK Pantothenate kina 94.9 0.12 2.6E-06 52.0 8.7 23 183-205 1-23 (220)
344 PF13671 AAA_33: AAA domain; P 94.8 0.025 5.5E-07 52.8 3.6 23 183-205 1-23 (143)
345 PRK13765 ATP-dependent proteas 94.8 0.052 1.1E-06 63.1 6.6 75 159-239 31-105 (637)
346 COG3854 SpoIIIAA ncharacterize 94.8 0.18 4E-06 49.1 9.1 119 171-296 128-251 (308)
347 COG4088 Predicted nucleotide k 94.8 0.018 3.9E-07 54.8 2.3 24 182-205 2-25 (261)
348 PRK05439 pantothenate kinase; 94.8 0.23 5E-06 52.3 10.7 81 179-264 84-166 (311)
349 cd03214 ABC_Iron-Siderophores_ 94.8 0.14 3.1E-06 49.8 8.8 116 180-300 24-160 (180)
350 PRK05973 replicative DNA helic 94.7 0.19 4.2E-06 50.7 9.7 49 180-233 63-111 (237)
351 PRK12724 flagellar biosynthesi 94.7 0.11 2.4E-06 56.6 8.4 25 181-205 223-247 (432)
352 PRK11823 DNA repair protein Ra 94.7 0.1 2.2E-06 58.6 8.5 84 180-272 79-165 (446)
353 TIGR03878 thermo_KaiC_2 KaiC d 94.7 0.16 3.4E-06 52.7 9.4 41 179-222 34-74 (259)
354 PF07726 AAA_3: ATPase family 94.7 0.031 6.8E-07 49.6 3.5 40 184-229 2-41 (131)
355 TIGR00150 HI0065_YjeE ATPase, 94.7 0.06 1.3E-06 48.8 5.4 39 167-205 7-46 (133)
356 TIGR00390 hslU ATP-dependent p 94.7 0.083 1.8E-06 57.3 7.3 47 159-205 12-71 (441)
357 PF03205 MobB: Molybdopterin g 94.7 0.045 9.7E-07 50.6 4.7 39 182-222 1-39 (140)
358 COG0464 SpoVK ATPases of the A 94.7 0.39 8.5E-06 55.3 13.5 129 180-331 275-426 (494)
359 TIGR01360 aden_kin_iso1 adenyl 94.7 0.03 6.4E-07 55.1 3.8 26 180-205 2-27 (188)
360 TIGR01425 SRP54_euk signal rec 94.7 0.13 2.9E-06 56.5 9.0 26 180-205 99-124 (429)
361 PF01583 APS_kinase: Adenylyls 94.7 0.038 8.3E-07 51.5 4.2 36 181-219 2-37 (156)
362 PRK06762 hypothetical protein; 94.7 0.03 6.5E-07 53.9 3.6 25 181-205 2-26 (166)
363 PRK05201 hslU ATP-dependent pr 94.6 0.09 2E-06 57.0 7.3 47 159-205 15-74 (443)
364 PRK08533 flagellar accessory p 94.6 0.2 4.2E-06 50.9 9.5 53 180-238 23-75 (230)
365 PF13481 AAA_25: AAA domain; P 94.6 0.14 3E-06 50.6 8.3 43 181-223 32-81 (193)
366 COG0563 Adk Adenylate kinase a 94.6 0.06 1.3E-06 51.9 5.5 23 183-205 2-24 (178)
367 PRK12723 flagellar biosynthesi 94.6 0.18 3.9E-06 55.0 9.7 90 180-273 173-264 (388)
368 PTZ00088 adenylate kinase 1; P 94.6 0.033 7.2E-07 56.2 3.8 23 183-205 8-30 (229)
369 COG3640 CooC CO dehydrogenase 94.5 0.064 1.4E-06 52.6 5.4 43 183-227 2-44 (255)
370 KOG1051 Chaperone HSP104 and r 94.5 0.16 3.4E-06 60.4 9.7 102 160-275 563-672 (898)
371 PF06745 KaiC: KaiC; InterPro 94.5 0.059 1.3E-06 54.8 5.7 89 179-273 17-125 (226)
372 COG2884 FtsE Predicted ATPase 94.5 0.23 5.1E-06 47.0 8.8 121 180-304 27-203 (223)
373 PRK12726 flagellar biosynthesi 94.5 0.22 4.7E-06 53.5 9.7 89 180-273 205-295 (407)
374 cd01135 V_A-ATPase_B V/A-type 94.5 0.14 3.1E-06 52.4 8.1 95 180-274 68-177 (276)
375 PRK03839 putative kinase; Prov 94.5 0.032 6.9E-07 54.5 3.4 23 183-205 2-24 (180)
376 PRK05922 type III secretion sy 94.5 0.11 2.3E-06 57.2 7.7 90 180-274 156-258 (434)
377 cd03228 ABCC_MRP_Like The MRP 94.5 0.2 4.4E-06 48.3 9.0 26 180-205 27-52 (171)
378 PRK06217 hypothetical protein; 94.4 0.065 1.4E-06 52.4 5.4 24 182-205 2-25 (183)
379 cd01124 KaiC KaiC is a circadi 94.4 0.12 2.7E-06 50.7 7.5 45 183-232 1-45 (187)
380 PF06309 Torsin: Torsin; Inte 94.4 0.085 1.9E-06 46.8 5.5 46 160-205 26-77 (127)
381 PRK14527 adenylate kinase; Pro 94.4 0.066 1.4E-06 52.8 5.4 26 180-205 5-30 (191)
382 PRK12597 F0F1 ATP synthase sub 94.4 0.12 2.7E-06 57.3 8.0 101 172-274 134-248 (461)
383 KOG0736 Peroxisome assembly fa 94.4 0.27 5.9E-06 56.4 10.6 92 160-274 673-775 (953)
384 PRK14974 cell division protein 94.4 0.18 4E-06 53.8 9.0 90 180-273 139-232 (336)
385 TIGR01420 pilT_fam pilus retra 94.4 0.073 1.6E-06 57.8 6.2 108 180-296 121-228 (343)
386 PRK04040 adenylate kinase; Pro 94.3 0.039 8.3E-07 54.0 3.6 47 181-239 2-48 (188)
387 PRK08927 fliI flagellum-specif 94.3 0.18 3.9E-06 55.6 9.0 90 180-274 157-259 (442)
388 PF00910 RNA_helicase: RNA hel 94.3 0.031 6.6E-07 49.1 2.6 22 184-205 1-22 (107)
389 cd03222 ABC_RNaseL_inhibitor T 94.3 0.096 2.1E-06 50.6 6.1 26 180-205 24-49 (177)
390 KOG0727 26S proteasome regulat 94.3 6.3 0.00014 39.2 18.8 46 160-205 156-213 (408)
391 PRK06002 fliI flagellum-specif 94.3 0.11 2.4E-06 57.2 7.3 91 180-274 164-265 (450)
392 PRK08149 ATP synthase SpaL; Va 94.3 0.17 3.8E-06 55.6 8.8 90 180-274 150-252 (428)
393 COG1428 Deoxynucleoside kinase 94.2 0.04 8.6E-07 53.2 3.3 49 181-235 4-52 (216)
394 TIGR00416 sms DNA repair prote 94.2 0.14 3.1E-06 57.5 8.3 51 170-223 82-133 (454)
395 TIGR00764 lon_rel lon-related 94.2 0.12 2.7E-06 60.2 8.1 74 159-238 18-91 (608)
396 PRK05703 flhF flagellar biosyn 94.2 0.16 3.6E-06 56.4 8.7 87 181-272 221-308 (424)
397 COG1703 ArgK Putative periplas 94.2 0.095 2.1E-06 53.4 6.0 61 169-230 38-99 (323)
398 PRK15453 phosphoribulokinase; 94.2 0.31 6.7E-06 50.1 9.8 80 180-262 4-89 (290)
399 PF12775 AAA_7: P-loop contain 94.2 0.078 1.7E-06 55.2 5.7 88 169-273 23-110 (272)
400 TIGR03575 selen_PSTK_euk L-ser 94.2 0.19 4.2E-06 53.6 8.7 22 184-205 2-23 (340)
401 COG1124 DppF ABC-type dipeptid 94.2 0.057 1.2E-06 53.3 4.3 26 180-205 32-57 (252)
402 cd03246 ABCC_Protease_Secretio 94.2 0.14 2.9E-06 49.6 7.0 26 180-205 27-52 (173)
403 cd03216 ABC_Carb_Monos_I This 94.2 0.11 2.3E-06 49.7 6.3 110 180-300 25-144 (163)
404 PF03308 ArgK: ArgK protein; 94.2 0.1 2.2E-06 52.4 6.2 58 167-225 14-72 (266)
405 KOG0473 Leucine-rich repeat pr 94.2 0.0021 4.6E-08 62.0 -5.3 87 533-621 37-123 (326)
406 cd02028 UMPK_like Uridine mono 94.2 0.094 2E-06 51.0 5.9 23 183-205 1-23 (179)
407 cd02024 NRK1 Nicotinamide ribo 94.1 0.036 7.9E-07 53.8 2.9 23 183-205 1-23 (187)
408 PRK00625 shikimate kinase; Pro 94.1 0.041 8.9E-07 52.9 3.2 23 183-205 2-24 (173)
409 cd02027 APSK Adenosine 5'-phos 94.1 0.15 3.3E-06 47.8 7.0 23 183-205 1-23 (149)
410 PRK10875 recD exonuclease V su 94.1 0.21 4.7E-06 58.0 9.6 115 181-297 167-301 (615)
411 TIGR02655 circ_KaiC circadian 94.1 0.27 5.8E-06 56.2 10.3 97 170-272 251-362 (484)
412 cd01125 repA Hexameric Replica 94.1 0.48 1E-05 48.6 11.3 55 183-237 3-67 (239)
413 PRK10751 molybdopterin-guanine 94.1 0.049 1.1E-06 51.9 3.6 26 180-205 5-30 (173)
414 cd01136 ATPase_flagellum-secre 94.1 0.19 4.1E-06 53.3 8.3 88 180-274 68-170 (326)
415 cd00544 CobU Adenosylcobinamid 94.1 0.25 5.5E-06 47.3 8.5 81 183-272 1-82 (169)
416 PRK09280 F0F1 ATP synthase sub 94.1 0.18 3.8E-06 55.9 8.3 93 180-274 143-249 (463)
417 TIGR03498 FliI_clade3 flagella 94.0 0.12 2.6E-06 56.9 6.9 91 180-274 139-241 (418)
418 PRK00131 aroK shikimate kinase 94.0 0.051 1.1E-06 52.7 3.8 26 180-205 3-28 (175)
419 cd02023 UMPK Uridine monophosp 94.0 0.038 8.3E-07 54.9 2.9 23 183-205 1-23 (198)
420 COG4240 Predicted kinase [Gene 93.9 0.31 6.6E-06 47.4 8.5 85 179-265 48-135 (300)
421 COG3598 RepA RecA-family ATPas 93.9 0.26 5.5E-06 50.6 8.4 69 170-241 81-157 (402)
422 KOG3347 Predicted nucleotide k 93.9 0.09 2E-06 47.4 4.7 36 180-223 6-41 (176)
423 PRK00889 adenylylsulfate kinas 93.9 0.057 1.2E-06 52.4 3.9 26 180-205 3-28 (175)
424 TIGR01359 UMP_CMP_kin_fam UMP- 93.9 0.042 9.2E-07 53.8 2.9 23 183-205 1-23 (183)
425 PF13504 LRR_7: Leucine rich r 93.9 0.033 7.1E-07 30.3 1.2 16 587-602 2-17 (17)
426 PF00625 Guanylate_kin: Guanyl 93.9 0.088 1.9E-06 51.5 5.1 38 181-221 2-39 (183)
427 PRK06936 type III secretion sy 93.9 0.16 3.4E-06 56.0 7.4 90 180-274 161-263 (439)
428 PF08433 KTI12: Chromatin asso 93.8 0.14 2.9E-06 53.2 6.6 25 182-206 2-26 (270)
429 TIGR03305 alt_F1F0_F1_bet alte 93.8 0.17 3.8E-06 55.8 7.7 93 180-274 137-243 (449)
430 TIGR02322 phosphon_PhnN phosph 93.8 0.054 1.2E-06 52.8 3.5 24 182-205 2-25 (179)
431 KOG0729 26S proteasome regulat 93.7 0.34 7.3E-06 48.1 8.6 46 160-205 178-235 (435)
432 COG4618 ArpD ABC-type protease 93.7 0.11 2.4E-06 56.7 5.8 26 180-205 361-386 (580)
433 COG0467 RAD55 RecA-superfamily 93.7 0.17 3.7E-06 52.7 7.1 55 179-239 21-75 (260)
434 PF08298 AAA_PrkA: PrkA AAA do 93.7 0.11 2.4E-06 54.8 5.5 47 159-205 61-112 (358)
435 PTZ00185 ATPase alpha subunit; 93.6 0.35 7.6E-06 53.7 9.5 91 180-274 188-300 (574)
436 COG0714 MoxR-like ATPases [Gen 93.6 0.17 3.6E-06 54.8 7.2 63 160-231 25-87 (329)
437 PF02374 ArsA_ATPase: Anion-tr 93.6 0.086 1.9E-06 55.9 4.8 47 182-231 2-48 (305)
438 TIGR00073 hypB hydrogenase acc 93.6 0.18 4E-06 50.3 7.0 28 178-205 19-46 (207)
439 cd01132 F1_ATPase_alpha F1 ATP 93.6 0.19 4.1E-06 51.6 7.0 95 180-281 68-180 (274)
440 KOG0735 AAA+-type ATPase [Post 93.6 2.2 4.7E-05 48.9 15.5 149 181-356 701-872 (952)
441 PF00158 Sigma54_activat: Sigm 93.5 0.12 2.5E-06 49.5 5.2 59 161-222 1-60 (168)
442 cd00227 CPT Chloramphenicol (C 93.5 0.069 1.5E-06 51.8 3.7 25 181-205 2-26 (175)
443 KOG2170 ATPase of the AAA+ sup 93.5 0.21 4.5E-06 50.8 7.0 46 160-205 83-134 (344)
444 COG0003 ArsA Predicted ATPase 93.5 0.11 2.5E-06 54.8 5.5 49 181-232 2-50 (322)
445 cd02020 CMPK Cytidine monophos 93.5 0.055 1.2E-06 50.7 2.9 23 183-205 1-23 (147)
446 TIGR00708 cobA cob(I)alamin ad 93.5 0.42 9.1E-06 45.5 8.7 114 180-298 4-140 (173)
447 TIGR01039 atpD ATP synthase, F 93.5 0.27 5.8E-06 54.3 8.4 93 180-274 142-248 (461)
448 TIGR01040 V-ATPase_V1_B V-type 93.5 0.27 5.9E-06 54.1 8.3 94 180-274 140-258 (466)
449 cd00267 ABC_ATPase ABC (ATP-bi 93.4 0.16 3.4E-06 48.3 5.9 111 180-301 24-143 (157)
450 PRK09099 type III secretion sy 93.4 0.31 6.7E-06 54.0 8.9 91 180-274 162-264 (441)
451 cd02029 PRK_like Phosphoribulo 93.4 0.2 4.4E-06 50.9 6.8 78 183-263 1-84 (277)
452 TIGR01069 mutS2 MutS2 family p 93.4 0.048 1E-06 65.3 2.8 190 180-383 321-523 (771)
453 PRK10416 signal recognition pa 93.4 0.46 9.9E-06 50.7 9.9 26 180-205 113-138 (318)
454 PF08477 Miro: Miro-like prote 93.4 0.068 1.5E-06 47.9 3.2 22 184-205 2-23 (119)
455 PLN02348 phosphoribulokinase 93.4 0.1 2.3E-06 56.1 4.9 37 169-205 37-73 (395)
456 PRK13949 shikimate kinase; Pro 93.4 0.075 1.6E-06 51.1 3.6 24 182-205 2-25 (169)
457 cd01130 VirB11-like_ATPase Typ 93.4 0.093 2E-06 51.5 4.3 94 181-281 25-118 (186)
458 cd01134 V_A-ATPase_A V/A-type 93.3 0.91 2E-05 48.2 11.6 60 170-234 146-206 (369)
459 PRK06995 flhF flagellar biosyn 93.3 0.35 7.7E-06 54.1 9.2 88 181-273 256-344 (484)
460 PF03215 Rad17: Rad17 cell cyc 93.3 0.11 2.3E-06 59.1 5.3 56 160-220 20-79 (519)
461 COG1936 Predicted nucleotide k 93.3 0.065 1.4E-06 50.0 2.8 20 183-202 2-21 (180)
462 PF13245 AAA_19: Part of AAA d 93.3 0.2 4.3E-06 40.6 5.3 25 181-205 10-34 (76)
463 PTZ00494 tuzin-like protein; P 93.3 2.1 4.5E-05 46.5 14.1 162 158-328 370-544 (664)
464 KOG0739 AAA+-type ATPase [Post 93.3 1.2 2.7E-05 45.2 11.8 167 160-354 134-335 (439)
465 PRK14721 flhF flagellar biosyn 93.3 0.46 1E-05 52.3 9.9 60 180-240 190-250 (420)
466 PRK05800 cobU adenosylcobinami 93.3 0.29 6.3E-06 46.9 7.4 83 182-272 2-85 (170)
467 PRK13947 shikimate kinase; Pro 93.3 0.069 1.5E-06 51.6 3.2 23 183-205 3-25 (171)
468 TIGR02524 dot_icm_DotB Dot/Icm 93.2 0.17 3.7E-06 54.9 6.4 101 171-279 126-228 (358)
469 TIGR01041 ATP_syn_B_arch ATP s 93.2 0.33 7.1E-06 54.0 8.7 94 180-274 140-249 (458)
470 cd00071 GMPK Guanosine monopho 93.2 0.076 1.6E-06 49.0 3.2 23 183-205 1-23 (137)
471 cd02021 GntK Gluconate kinase 93.2 0.066 1.4E-06 50.4 2.9 23 183-205 1-23 (150)
472 TIGR02030 BchI-ChlI magnesium 93.2 0.13 2.9E-06 55.0 5.5 45 160-205 5-49 (337)
473 PRK14530 adenylate kinase; Pro 93.2 0.075 1.6E-06 53.5 3.4 24 182-205 4-27 (215)
474 PRK03846 adenylylsulfate kinas 93.2 0.089 1.9E-06 52.2 3.9 27 179-205 22-48 (198)
475 TIGR01650 PD_CobS cobaltochela 93.2 0.3 6.4E-06 51.6 7.8 61 161-230 47-107 (327)
476 PRK00279 adk adenylate kinase; 93.1 0.12 2.7E-06 51.9 4.9 23 183-205 2-24 (215)
477 CHL00081 chlI Mg-protoporyphyr 93.1 0.13 2.8E-06 55.1 5.2 46 159-205 17-62 (350)
478 PF01078 Mg_chelatase: Magnesi 93.1 0.16 3.4E-06 49.7 5.2 43 160-205 4-46 (206)
479 PRK00300 gmk guanylate kinase; 93.1 0.088 1.9E-06 52.6 3.7 26 180-205 4-29 (205)
480 PF03266 NTPase_1: NTPase; In 93.1 0.078 1.7E-06 50.7 3.1 22 184-205 2-23 (168)
481 TIGR03263 guanyl_kin guanylate 93.0 0.074 1.6E-06 51.9 3.1 24 182-205 2-25 (180)
482 PRK05688 fliI flagellum-specif 93.0 0.35 7.6E-06 53.5 8.5 90 180-274 167-269 (451)
483 KOG3928 Mitochondrial ribosome 93.0 1.2 2.5E-05 47.7 11.7 57 307-363 403-459 (461)
484 COG0465 HflB ATP-dependent Zn 93.0 1.2 2.7E-05 50.8 12.8 46 160-205 151-207 (596)
485 PRK12339 2-phosphoglycerate ki 93.0 0.097 2.1E-06 51.5 3.8 26 180-205 2-27 (197)
486 PRK14723 flhF flagellar biosyn 93.0 0.48 1E-05 55.9 9.9 88 181-273 185-273 (767)
487 PHA02774 E1; Provisional 93.0 0.25 5.4E-06 55.7 7.2 50 166-220 419-468 (613)
488 PHA02244 ATPase-like protein 93.0 0.22 4.8E-06 53.2 6.5 43 160-205 97-143 (383)
489 COG1643 HrpA HrpA-like helicas 92.9 0.79 1.7E-05 54.8 11.7 130 165-300 52-207 (845)
490 PRK05057 aroK shikimate kinase 92.9 0.097 2.1E-06 50.5 3.6 25 181-205 4-28 (172)
491 COG1116 TauB ABC-type nitrate/ 92.9 0.084 1.8E-06 52.6 3.2 26 180-205 28-53 (248)
492 cd00820 PEPCK_HprK Phosphoenol 92.9 0.11 2.3E-06 45.1 3.4 23 180-202 14-36 (107)
493 PF03029 ATP_bind_1: Conserved 92.9 0.13 2.7E-06 52.5 4.6 32 186-220 1-32 (238)
494 COG2401 ABC-type ATPase fused 92.9 0.13 2.7E-06 54.6 4.4 26 180-205 408-433 (593)
495 cd00464 SK Shikimate kinase (S 92.8 0.087 1.9E-06 49.8 3.2 22 184-205 2-23 (154)
496 PRK07196 fliI flagellum-specif 92.8 0.39 8.4E-06 53.0 8.4 90 180-274 154-256 (434)
497 TIGR01351 adk adenylate kinase 92.8 0.14 3E-06 51.3 4.7 22 184-205 2-23 (210)
498 TIGR01313 therm_gnt_kin carboh 92.8 0.077 1.7E-06 50.8 2.7 22 184-205 1-22 (163)
499 COG2274 SunT ABC-type bacterio 92.8 0.68 1.5E-05 54.9 10.9 26 180-205 498-523 (709)
500 KOG3864 Uncharacterized conser 92.8 0.019 4.2E-07 54.7 -1.4 70 771-851 120-190 (221)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-98 Score=875.50 Aligned_cols=839 Identities=40% Similarity=0.691 Sum_probs=698.6
Q ss_pred HHHHHHhhhhcccchhchHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHHHHHHHHHHHHHHhhccC
Q 002569 15 FNRCLDCTLGKAAYITDLKDNVVALETELEQLIAAKNDVMTRVLNSEHQHKMKRLNQVQVWLSRVETLKTEVDELMGRDG 94 (906)
Q Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~v~~Wl~~v~~~~~~~ed~ld~~~ 94 (906)
++++..++.+++..+.++++.+..|++++..|+.+++|+ +++ +.....+..|.+.++++.|+++|.++.
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~-------~a~--~~~~~~~~~~~e~~~~~~~~~e~~~~~-- 77 (889)
T KOG4658|consen 9 VEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDL-------DAK--RDDLERRVNWEEDVGDLVYLAEDIIWL-- 77 (889)
T ss_pred hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH-------Hhh--cchHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 447788889999999999999999999999999999994 433 123466889999999999999999987
Q ss_pred ccccc----------------cccccCCccCCCcchhhhHHHHHHHHHHHHHHHHhcCChhhhhhc-CCcccccccCCCC
Q 002569 95 VSQEI----------------DKLCLGGYCSRNCKSSYKFGRKVAKMLRDVKALKGEGVFEEVAAA-APELISVADERPT 157 (906)
Q Consensus 95 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 157 (906)
+.... ++-|+.++|.......+.+++++...+++++.+..++.|+.+... .+ ......+|.
T Consensus 78 ~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~--~~~~e~~~~ 155 (889)
T KOG4658|consen 78 FLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDP--REKVETRPI 155 (889)
T ss_pred HHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccc--hhhcccCCC
Confidence 43322 223444666666777788889999999999999877767665542 21 233344444
Q ss_pred CCcc-cchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHH
Q 002569 158 EPTV-VGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKK 236 (906)
Q Consensus 158 ~~~~-vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~ 236 (906)
.+.. ||.+..++++++.|.++ +..+++|+||||+||||||+.++|+...++.+|+.++||.||+.++..+++++|++.
T Consensus 156 ~~~~~VG~e~~~~kl~~~L~~d-~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 156 QSESDVGLETMLEKLWNRLMED-DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILER 234 (889)
T ss_pred CccccccHHHHHHHHHHHhccC-CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHH
Confidence 4433 99999999999999988 559999999999999999999999994489999999999999999999999999999
Q ss_pred hCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccchhhhhhcCCcCCC---CcEEEEEecccccccC-CCccceEEe
Q 002569 237 IGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWERVDLKKVGVPLPK---NSAVVFTTRFVDVCGG-MEARRKFKV 312 (906)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~---gs~iivTtR~~~v~~~-~~~~~~~~l 312 (906)
++.....+.....++++..+.+.|++|||+||+||||+..+|+.++.|+|. ||+|++|||++.||.. |++...+++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 998776666666789999999999999999999999999999999999988 7999999999999998 888899999
Q ss_pred ccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHHHHhhcCCCHHHHHHHHHHHhhh-hhccCCCc
Q 002569 313 ECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIGRAMAYKKTPEEWRYAIEVLRRS-ASEFAGLG 391 (906)
Q Consensus 313 ~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~~~~l~~~-~~~~~~~~ 391 (906)
+.|+++|||.||.+.++......++.++++|++++++|+|+|||++++|+.|+.+++..+|+++.+.+.+. ..+.+++.
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 99999999999999999886566677999999999999999999999999999999999999999999887 55556667
Q ss_pred hhhhhhHHhhhcCCCchhhhhhhhhhccCCCCcccChhhHHHHHHhcCCcccc--ccccchhhHHHHHHHHHhhcccccc
Q 002569 392 KEVYPLLKFSYDCLPSDAIRSCFLYCCLYPEDYGIDKRDLIDCWMCEGFLEED--KFGTQNRGYYIVGTLVHACLLEEVE 469 (906)
Q Consensus 392 ~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~~--~~~~~~~~~~~~~~L~~~~ll~~~~ 469 (906)
+.++++|++||+.||+ ++|.||+|||+||+||+|+++.||.+|+||||+.+. +..++++|+.|+.+|++++|++...
T Consensus 395 ~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 8999999999999995 999999999999999999999999999999999885 7788999999999999999999873
Q ss_pred ----CCeEEEeeeeechhhHhHhhhhcccccEEEEcCCCccccCCCcccceeeeEEeccccCCCCCCCCCCCCCceEEEe
Q 002569 470 ----DDQVKMHDVVRDMALWITCEIEKEKEGFLVYAGSGLTEAPADVRGWEIVRRLSLMRNSIDNLPTVPTCPHLLTLFL 545 (906)
Q Consensus 470 ----~~~~~mHdlv~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l 545 (906)
..+|+|||+|||+|.++|++.+.+++++++..+.+..+. +....+..+|++++.+|.+..++....+++|++|.+
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~-~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll 552 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEI-PQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLL 552 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCcccc-ccccchhheeEEEEeccchhhccCCCCCCccceEEE
Confidence 378999999999999999988888888888777666666 666778999999999999999998889999999999
Q ss_pred ecCC--CccccccccCCCCceeEEEccCcccccccccccccccccceeecccCcccccChhhhCCCCCcEeccccccccc
Q 002569 546 NRNP--LRTITGGFFQSMSCLTVLKMSDNETLRQLPMGISKLVSLQLLDISKTSVVELPEELKALVNLKCLNLDWAKELV 623 (906)
Q Consensus 546 ~~~~--l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~ 623 (906)
.+|. +..++..||..|+.|++|||++|..+.++|++|++|.|||||++++|.|+.+|.++++|++|.+|++..+..+.
T Consensus 553 ~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~ 632 (889)
T KOG4658|consen 553 QRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE 632 (889)
T ss_pred eecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc
Confidence 9996 78899999999999999999999999999999999999999999999999999999999999999999997777
Q ss_pred ccChhhhcCCCCCceeecccccccCCCCCCCccccccHHhhcCCCCccEEEEEEechhhHHHHhhcccccccceeeEecc
Q 002569 624 VVPQQLLSNFSRLRVLRMFAIGVRSPYGLSSSWHENVAEELLGLKYLEVLEITFRSFKAYQTFLSSQKLRSCTQALLLDE 703 (906)
Q Consensus 624 ~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 703 (906)
.+|. +...|++||+|.+...+ .........++..|++|+.+.++..+...+..+.....+.+..+.+.+.+
T Consensus 633 ~~~~-i~~~L~~Lr~L~l~~s~--------~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~ 703 (889)
T KOG4658|consen 633 SIPG-ILLELQSLRVLRLPRSA--------LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEG 703 (889)
T ss_pred cccc-hhhhcccccEEEeeccc--------cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcc
Confidence 7654 46779999999998642 22445678888999999999887666544455555555555566666544
Q ss_pred cCCCcccccccccccCCCcEEEecCCCCCCceeeecccccccCCCcc-cCCCCCEEEEecCCCCCCchhhhcCCCccEEe
Q 002569 704 FDREESIDVADLADLEQLNTLSFVGCDWPGGLRIDYKDMVQKSRQPY-VFRSLEEVTVDSCRNLKHLTFLVFAPNLKSIS 782 (906)
Q Consensus 704 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~ 782 (906)
+.. ....+++..+.+|+.|.+.+|...+.. ..|... .... .|+++.++.+.+|..++.+.|....|+|+.|.
T Consensus 704 ~~~--~~~~~~~~~l~~L~~L~i~~~~~~e~~-~~~~~~----~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~ 776 (889)
T KOG4658|consen 704 CSK--RTLISSLGSLGNLEELSILDCGISEIV-IEWEES----LIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLS 776 (889)
T ss_pred ccc--ceeecccccccCcceEEEEcCCCchhh-cccccc----cchhhhHHHHHHHHhhccccccccchhhccCcccEEE
Confidence 321 122256788999999999999886532 222221 0111 26788999999999999999999999999999
Q ss_pred eecCcchHHHhhcCCCCCcCcccCcCCCcCCCccEE-ecCCccccccccCCCCCCCCccEEeecCCCCCCCcCCCCCC-C
Q 002569 783 VRYCNDMEEIISAGEFDDIPEMTGIISSPFAKLQRL-RLERLRNLKSIYWKPLPLPRLKELEFRGCDSLKKLPLDSNS-A 860 (906)
Q Consensus 783 L~~c~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~Lp~~~n~-~ 860 (906)
+..|..++++++........ ......|+++..+ .+.+.+.+..+.+.+..+++|+.+.+..||++.++|+.+.. .
T Consensus 777 l~~~~~~e~~i~~~k~~~~l---~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i 853 (889)
T KOG4658|consen 777 LVSCRLLEDIIPKLKALLEL---KELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTI 853 (889)
T ss_pred EecccccccCCCHHHHhhhc---ccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccce
Confidence 99999999887643211100 0124567888888 58888888888888888999999999999999999997543 2
Q ss_pred CC--cceEEEcccccccccccCcccchhhh
Q 002569 861 NG--RRILIRGGEYWWRGLQWKDEATQNAF 888 (906)
Q Consensus 861 ~l--~~~~i~~~~~~~~~l~~~~~~~~~~~ 888 (906)
.. ..+....+.+|.+.+.|.++.....+
T Consensus 854 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 854 VGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred eccccceeecCCccceeeEEehhhhhhhhc
Confidence 22 22333355677899999998766543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.3e-62 Score=604.80 Aligned_cols=636 Identities=20% Similarity=0.290 Sum_probs=411.8
Q ss_pred CcccchhHHHHHHHHHHhc-CCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEe---CCc-----------
Q 002569 159 PTVVGLQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVV---SKD----------- 223 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---s~~----------- 223 (906)
+.+|||+..++++..+|.- .+++++|+|+||||+||||||+++|+.. ..+|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 4589999999999998853 3478999999999999999999999987 578998888742 111
Q ss_pred cc-HHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccchhhhhhcCCc---CCCCcEEEEEecccc
Q 002569 224 LQ-LEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWERVDLKKVGVP---LPKNSAVVFTTRFVD 299 (906)
Q Consensus 224 ~~-~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~---~~~gs~iivTtR~~~ 299 (906)
.. ...++++++.++....+ ..... ...+++.++++|+||||||||+..+|+.+... ++.||+||||||+..
T Consensus 261 ~~~~~~l~~~~l~~il~~~~-~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~ 335 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKD-IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKH 335 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCC-cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHH
Confidence 01 12344455444322110 01111 14567788999999999999998888877543 345999999999999
Q ss_pred cccCCCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHHHHhhcCCCHHHHHHHHHH
Q 002569 300 VCGGMEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIGRAMAYKKTPEEWRYAIEV 379 (906)
Q Consensus 300 v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~~~~ 379 (906)
++..++..++|+++.+++++||+||+++||... .++.++.+++++|+++|+|+|||++++|++|++ ++.++|+.+++.
T Consensus 336 vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~ 413 (1153)
T PLN03210 336 FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPR 413 (1153)
T ss_pred HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 988777788999999999999999999999765 344568899999999999999999999999997 578999999998
Q ss_pred HhhhhhccCCCchhhhhhHHhhhcCCCchhhhhhhhhhccCCCCcccChhhHHHHHHhcCCccccccccchhhHHHHHHH
Q 002569 380 LRRSASEFAGLGKEVYPLLKFSYDCLPSDAIRSCFLYCCLYPEDYGIDKRDLIDCWMCEGFLEEDKFGTQNRGYYIVGTL 459 (906)
Q Consensus 380 l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~L 459 (906)
++... +.++..+|++||+.|+++..|.||+++|+|+.++.++ .|..|++.+.... +..++.|
T Consensus 414 L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~---------~~~l~~L 475 (1153)
T PLN03210 414 LRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV---------NIGLKNL 475 (1153)
T ss_pred HHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc---------hhChHHH
Confidence 87643 2479999999999998746899999999999887553 4777887764432 2238999
Q ss_pred HHhhccccccCCeEEEeeeeechhhHhHhhhh--cccccEEEEcC----------------------CCccc--c-CCCc
Q 002569 460 VHACLLEEVEDDQVKMHDVVRDMALWITCEIE--KEKEGFLVYAG----------------------SGLTE--A-PADV 512 (906)
Q Consensus 460 ~~~~ll~~~~~~~~~mHdlv~d~a~~~~~~~~--~~~~~~~~~~~----------------------~~~~~--~-~~~~ 512 (906)
+++||++.. .+++.|||++|+||+.++++.. +.++.+++... ..+.+ + +..+
T Consensus 476 ~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF 554 (1153)
T PLN03210 476 VDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAF 554 (1153)
T ss_pred HhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHH
Confidence 999999876 4689999999999999987532 11222222110 00000 0 0012
Q ss_pred cccee-------------------------------eeEEeccccCCCCCCCCCCCCCceEEEeecCCCccccccccCCC
Q 002569 513 RGWEI-------------------------------VRRLSLMRNSIDNLPTVPTCPHLLTLFLNRNPLRTITGGFFQSM 561 (906)
Q Consensus 513 ~~~~~-------------------------------lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l 561 (906)
..+.+ +|.|.+.++.+..+|....+.+|+.|++.+|.+..++.+ +..+
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l 633 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSL 633 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccC
Confidence 22333 444444444445555433455666666666666555544 4566
Q ss_pred CceeEEEccCcccccccccccccccccceeecccC-cccccChhhhCCCCCcEecccccccccccChhhhcCCCCCceee
Q 002569 562 SCLTVLKMSDNETLRQLPMGISKLVSLQLLDISKT-SVVELPEELKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRVLR 640 (906)
Q Consensus 562 ~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~ 640 (906)
++|++|+|++|..++.+| .++.+++|++|+|++| .+.++|..++++++|+.|++++|..++.+|.. + ++++|++|+
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~ 710 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLN 710 (1153)
T ss_pred CCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEe
Confidence 666666666665566666 4666666777777665 45566666677777777777766666666664 2 566677776
Q ss_pred cccccccCCCCCCCccccccHHhhcCCCCccEEEEEEechhhHHHHhhcccccccceeeEecccCCCc------cccccc
Q 002569 641 MFAIGVRSPYGLSSSWHENVAEELLGLKYLEVLEITFRSFKAYQTFLSSQKLRSCTQALLLDEFDREE------SIDVAD 714 (906)
Q Consensus 641 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~------~~~~~~ 714 (906)
+.+|..... .+ ...++|+.|+++.+.+..++... ...+|+.|.+.++.... .+....
T Consensus 711 Lsgc~~L~~----------~p---~~~~nL~~L~L~~n~i~~lP~~~----~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 711 LSGCSRLKS----------FP---DISTNISWLDLDETAIEEFPSNL----RLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred CCCCCCccc----------cc---cccCCcCeeecCCCccccccccc----cccccccccccccchhhccccccccchhh
Confidence 666522110 00 01235555555555544433211 01233333333221100 000000
Q ss_pred ccccCCCcEEEecCCCCCCceeeecccccccCCCcccCCCCCEEEEecCCCCCCchhhhcCCCccEEeeecCcchHHHhh
Q 002569 715 LADLEQLNTLSFVGCDWPGGLRIDYKDMVQKSRQPYVFRSLEEVTVDSCRNLKHLTFLVFAPNLKSISVRYCNDMEEIIS 794 (906)
Q Consensus 715 l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~ 794 (906)
...+++|+.|++++|.....+|..+ ..+++|+.|++++|.+++.+|....+++|+.|++++|..+..+..
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~si----------~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSSI----------QNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred hhccccchheeCCCCCCccccChhh----------hCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc
Confidence 1112345555555544433332221 124445555555554444444433444555555555544433211
Q ss_pred cC-----------CCCCcCcccCcCCCcCCCccEEecCCccccccccCCCCCCCCccEEeecCCCCCCCcCCCCC
Q 002569 795 AG-----------EFDDIPEMTGIISSPFAKLQRLRLERLRNLKSIYWKPLPLPRLKELEFRGCDSLKKLPLDSN 858 (906)
Q Consensus 795 ~~-----------~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~Lp~~~n 858 (906)
.. ....+| .....+++|+.|++.+|++|+.++.....+++|+.|++++|++|+.+++..+
T Consensus 844 ~~~nL~~L~Ls~n~i~~iP----~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~ 914 (1153)
T PLN03210 844 ISTNISDLNLSRTGIEEVP----WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGS 914 (1153)
T ss_pred cccccCEeECCCCCCccCh----HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCC
Confidence 00 000111 2345688999999999999999998888899999999999999998877543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.2e-43 Score=376.45 Aligned_cols=279 Identities=35% Similarity=0.656 Sum_probs=230.0
Q ss_pred hhHHHHHHHHHHhc-CCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCC
Q 002569 164 LQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTD 242 (906)
Q Consensus 164 r~~~~~~l~~~L~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~ 242 (906)
||.++++|.+.|.+ .++.++|+|+|+||+||||||++++++. .++.+|+.++|+.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999987 2489999999999999999999999986 467999999999999999999999999999987754
Q ss_pred cc-ccCCHHHHHHHHHHHhccCcEEEEEccccchhhhhhcCCcCCC---CcEEEEEecccccccCCCc-cceEEeccCCh
Q 002569 243 SW-KDRSLEEKAQDIFKTLSKKKFVLLLDDLWERVDLKKVGVPLPK---NSAVVFTTRFVDVCGGMEA-RRKFKVECLSD 317 (906)
Q Consensus 243 ~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~---gs~iivTtR~~~v~~~~~~-~~~~~l~~L~~ 317 (906)
.. ...+..+....+.+.+.++++||||||||+...|+.+...++. |++||||||+..++..++. ...|++++|++
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33 4567888999999999999999999999999999888766554 8999999999999876654 67899999999
Q ss_pred HhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHHHHhhcCCCHHHHHHHHHHHhhhhhccCCCchhhhhh
Q 002569 318 EDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIGRAMAYKKTPEEWRYAIEVLRRSASEFAGLGKEVYPL 397 (906)
Q Consensus 318 ~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 397 (906)
+||++||.+.++.......+.+.+.+++|+++|+|+|+|++++|++++.+.+..+|+.+++.+.....+..+....+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999876533446678899999999999999999999999766678899999998887765444445789999
Q ss_pred HHhhhcCCCchhhhhhhhhhccCCCCcccChhhHHHHHHhcCCcccc
Q 002569 398 LKFSYDCLPSDAIRSCFLYCCLYPEDYGIDKRDLIDCWMCEGFLEED 444 (906)
Q Consensus 398 l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~~ 444 (906)
+.+||+.||+ ++|.||+||++||+++.|+++.++++|++||||...
T Consensus 240 l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 240 LELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999 899999999999999999999999999999999763
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=1.9e-23 Score=261.07 Aligned_cols=370 Identities=20% Similarity=0.185 Sum_probs=216.1
Q ss_pred cCCCcc-cceeeeEEeccccCCCCCCCCCCCCCceEEEeecCCCccccccccCCCCceeEEEccCccccccccccccccc
Q 002569 508 APADVR-GWEIVRRLSLMRNSIDNLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPMGISKLV 586 (906)
Q Consensus 508 ~~~~~~-~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~ 586 (906)
+|..+. .+.++++|++++|.+........+++|++|++++|.+....+..++++++|++|+|++|.....+|..+++++
T Consensus 109 ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 188 (968)
T PLN00113 109 IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT 188 (968)
T ss_pred CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCc
Confidence 443333 5667777777777665433334567777777777776544444467777777777777733345677777777
Q ss_pred ccceeecccCccc-ccChhhhCCCCCcEecccccccccccChhhhcCCCCCceeecccccccCCCCCCCccccccHHhhc
Q 002569 587 SLQLLDISKTSVV-ELPEELKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFAIGVRSPYGLSSSWHENVAEELL 665 (906)
Q Consensus 587 ~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~ 665 (906)
+|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+. +..+..++
T Consensus 189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~----------~~~p~~l~ 257 (968)
T PLN00113 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLT----------GPIPSSLG 257 (968)
T ss_pred CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceec----------cccChhHh
Confidence 7777777777665 56777777777777777777544456665 677777777777766432 22455667
Q ss_pred CCCCccEEEEEEechhh-HHHHhhcccccccceeeEecccCCCcccccccccccCCCcEEEecCCCCCCceeeecccccc
Q 002569 666 GLKYLEVLEITFRSFKA-YQTFLSSQKLRSCTQALLLDEFDREESIDVADLADLEQLNTLSFVGCDWPGGLRIDYKDMVQ 744 (906)
Q Consensus 666 ~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~ 744 (906)
.+++|+.|+++.|.+.+ ++.. .....+|+.|++++|.....++ ..+..+++|+.|++++|.....++..+
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~~----- 328 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPS---IFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVAL----- 328 (968)
T ss_pred CCCCCCEEECcCCeeeccCchh---HhhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCCccCCcCChhH-----
Confidence 77777777777666542 1111 1223467777777765433332 345667777777777776654332222
Q ss_pred cCCCcccCCCCCEEEEecCCCCCCch-hhhcCCCccEEeeecCcchHHHhhcCC-CCCcC-------cccC---cCCCcC
Q 002569 745 KSRQPYVFRSLEEVTVDSCRNLKHLT-FLVFAPNLKSISVRYCNDMEEIISAGE-FDDIP-------EMTG---IISSPF 812 (906)
Q Consensus 745 l~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~-~~~~~-------~l~~---~~~~~~ 812 (906)
..+++|+.|++++|.-...+| .++.+++|+.|++++|.....+..... ..... .+.+ .....+
T Consensus 329 -----~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 403 (968)
T PLN00113 329 -----TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403 (968)
T ss_pred -----hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC
Confidence 246677777777774333344 366677777777777643221110000 00000 0000 123356
Q ss_pred CCccEEecCCccccccccCCCCCCCCccEEeecCC-------------CCCCCcCCCCCCCCCcceEEEccccccccccc
Q 002569 813 AKLQRLRLERLRNLKSIYWKPLPLPRLKELEFRGC-------------DSLKKLPLDSNSANGRRILIRGGEYWWRGLQW 879 (906)
Q Consensus 813 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c-------------~~L~~Lp~~~n~~~l~~~~i~~~~~~~~~l~~ 879 (906)
++|+.|.+.++.-...++.....+++|+.|+++++ ++|+.|.+++|..........+ ..-++.|++
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L~~L~l 482 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDL 482 (968)
T ss_pred CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-cccceEEEC
Confidence 77888888776544445544556777777777643 4455555555443222222111 134567888
Q ss_pred CcccchhhhccCCcc---ccceeeccC
Q 002569 880 KDEATQNAFRLCFQS---LDELWLEGL 903 (906)
Q Consensus 880 ~~~~~~~~~~~~~~~---l~~l~l~~~ 903 (906)
..|.+.+.+|..|.+ +.+|+|+++
T Consensus 483 s~n~l~~~~~~~~~~l~~L~~L~Ls~N 509 (968)
T PLN00113 483 SRNQFSGAVPRKLGSLSELMQLKLSEN 509 (968)
T ss_pred cCCccCCccChhhhhhhccCEEECcCC
Confidence 888888777766654 466777654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=4e-23 Score=258.10 Aligned_cols=365 Identities=19% Similarity=0.172 Sum_probs=165.0
Q ss_pred CcccceeeeEEeccccCCC-CCC-CCCCCCCceEEEeecCCCccccccccCCCCceeEEEccCccccccccccccccccc
Q 002569 511 DVRGWEIVRRLSLMRNSID-NLP-TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPMGISKLVSL 588 (906)
Q Consensus 511 ~~~~~~~lr~L~l~~~~~~-~l~-~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L 588 (906)
.+..++++++|++++|.+. .+| .+.++++|++|++++|.+....+..++++++|++|+|++|.....+|..++++++|
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 238 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238 (968)
T ss_pred HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence 3444455555555555443 233 23445555555555555443333334555555555555552222345555555555
Q ss_pred ceeecccCccc-ccChhhhCCCCCcEecccccccccccChhhhcCCCCCceeecccccccCCCCCCCccccccHHhhcCC
Q 002569 589 QLLDISKTSVV-ELPEELKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFAIGVRSPYGLSSSWHENVAEELLGL 667 (906)
Q Consensus 589 ~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l 667 (906)
++|++++|.+. .+|..++++++|++|++++|.....+|.. +.++++|++|++++|.+. ...+..+..+
T Consensus 239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~----------~~~p~~~~~l 307 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLS----------GEIPELVIQL 307 (968)
T ss_pred CEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCeec----------cCCChhHcCC
Confidence 55555555444 44555555555555555555333334433 445555555555544222 1233344555
Q ss_pred CCccEEEEEEechhhHHHHhhcccccccceeeEecccCCCcccccccccccCCCcEEEecCCCCCCceeeeccccc----
Q 002569 668 KYLEVLEITFRSFKAYQTFLSSQKLRSCTQALLLDEFDREESIDVADLADLEQLNTLSFVGCDWPGGLRIDYKDMV---- 743 (906)
Q Consensus 668 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~---- 743 (906)
++|+.|+++.|.+.+... ......++|+.|++++|.....++ ..+..+++|+.|++++|.....++..+....
T Consensus 308 ~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~ 384 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIP--VALTSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK 384 (968)
T ss_pred CCCcEEECCCCccCCcCC--hhHhcCCCCCEEECcCCCCcCcCC-hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCE
Confidence 555555555554432110 111123355555665554332222 3344555666666665544332221111100
Q ss_pred ----------ccCCCcccCCCCCEEEEecCCCCCCch-hhhcCCCccEEeeecCcchHHHhhcCCCCCcCcccCcCCCcC
Q 002569 744 ----------QKSRQPYVFRSLEEVTVDSCRNLKHLT-FLVFAPNLKSISVRYCNDMEEIISAGEFDDIPEMTGIISSPF 812 (906)
Q Consensus 744 ----------~l~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~l~~~~~~~~ 812 (906)
..+.....+++|+.|++++|.-...+| .+..+++|+.|++++|.. ...+. .....+
T Consensus 385 L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~~~~------------~~~~~l 451 (968)
T PLN00113 385 LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL-QGRIN------------SRKWDM 451 (968)
T ss_pred EECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcc-cCccC------------hhhccC
Confidence 000011123445555555542111222 244455555555555431 11110 122346
Q ss_pred CCccEEecCCccccccccCCCCCCCCccEEeecCCC-------------CCCCcCCCCCCCCCcceEEEccccccccccc
Q 002569 813 AKLQRLRLERLRNLKSIYWKPLPLPRLKELEFRGCD-------------SLKKLPLDSNSANGRRILIRGGEYWWRGLQW 879 (906)
Q Consensus 813 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~-------------~L~~Lp~~~n~~~l~~~~i~~~~~~~~~l~~ 879 (906)
++|+.|++.++.....++... ..++|+.|++++|. +|+.|.++.|..........+....+..|.+
T Consensus 452 ~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 530 (968)
T PLN00113 452 PSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530 (968)
T ss_pred CCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEEC
Confidence 677777777665444443222 24566666666542 3333344443332222111122234566777
Q ss_pred CcccchhhhccCCcc---ccceeeccC
Q 002569 880 KDEATQNAFRLCFQS---LDELWLEGL 903 (906)
Q Consensus 880 ~~~~~~~~~~~~~~~---l~~l~l~~~ 903 (906)
.+|.+.+.+|..|.+ +++|+|+++
T Consensus 531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N 557 (968)
T PLN00113 531 SHNQLSGQIPASFSEMPVLSQLDLSQN 557 (968)
T ss_pred CCCcccccCChhHhCcccCCEEECCCC
Confidence 777777777666554 456666554
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=2.3e-23 Score=219.89 Aligned_cols=328 Identities=20% Similarity=0.263 Sum_probs=213.7
Q ss_pred ccEEEEcCCCccccCCCcccceeeeEEeccccCCCCCC-CCCCCCCceEEEeecCCC--ccccccccCCCCceeEEEccC
Q 002569 495 EGFLVYAGSGLTEAPADVRGWEIVRRLSLMRNSIDNLP-TVPTCPHLLTLFLNRNPL--RTITGGFFQSMSCLTVLKMSD 571 (906)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~-~~~~~~~Lr~L~l~~~~l--~~~~~~~~~~l~~L~~L~Ls~ 571 (906)
-.|+.....++..+|..++.+.+++||++..|++..+. .+..++.||.+.+..|.+ ..+|+++| .+..|.+||||+
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSH 112 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecch
Confidence 46777777888889888899999999999999888766 678899999999999885 46788754 688999999999
Q ss_pred cccccccccccccccccceeecccCcccccChh-hhCCCCCcEecccccccccccChhhhcCCCCCceeecccccccCCC
Q 002569 572 NETLRQLPMGISKLVSLQLLDISKTSVVELPEE-LKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFAIGVRSPY 650 (906)
Q Consensus 572 ~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~ 650 (906)
| .+++.|..+.+-+++-+|+||+|+|.++|.. +.+|+.|-+|||++| .++.+|++ +.+|.+|++|.+++|.+.
T Consensus 113 N-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~--- 186 (1255)
T KOG0444|consen 113 N-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLN--- 186 (1255)
T ss_pred h-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhh---
Confidence 9 8999999999999999999999999999865 468889999999988 78899988 889999999999876321
Q ss_pred CCCCccccccHHhhcCCCCccEEEEEEechhhHHHHhhcccccccceeeEecccCCCcccccccccccCCCcEEEecCCC
Q 002569 651 GLSSSWHENVAEELLGLKYLEVLEITFRSFKAYQTFLSSQKLRSCTQALLLDEFDREESIDVADLADLEQLNTLSFVGCD 730 (906)
Q Consensus 651 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 730 (906)
...+..|..++.|++|.+++.+- .+..+..+..-+.+|+.++++.|. +..++ ..+.++++|+.|++++|.
T Consensus 187 -------hfQLrQLPsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N~-Lp~vP-ecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 187 -------HFQLRQLPSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSENN-LPIVP-ECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred -------HHHHhcCccchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccccC-CCcch-HHHhhhhhhheeccCcCc
Confidence 12333444444555555553321 122222222223345555555443 11221 334555566666666655
Q ss_pred CCCceeee---ccc----------ccccCCCcccCCCCCEEEEecCCCC--CCchh-hhcCCCccEEeeecCcchHHHhh
Q 002569 731 WPGGLRID---YKD----------MVQKSRQPYVFRSLEEVTVDSCRNL--KHLTF-LVFAPNLKSISVRYCNDMEEIIS 794 (906)
Q Consensus 731 ~~~~l~~~---~~~----------~~~l~~~~~~~~~L~~L~l~~c~~l--~~l~~-l~~l~~L~~L~L~~c~~l~~i~~ 794 (906)
+.+ +... |.. ++.+|.....+++|++|.+.++ ++ ..+|. +|.+.+|+.+...++ .++-+
T Consensus 257 ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN-~LElV-- 331 (1255)
T KOG0444|consen 257 ITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANN-KLELV-- 331 (1255)
T ss_pred eee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhcc-ccccC--
Confidence 443 1110 100 0001111122344444444443 22 22332 444445555444442 22211
Q ss_pred cCCCCCcCcccCcCCCcCCCccEEecCCccccccccCCCCCCCCccEEeecCCCCCCCcCCC
Q 002569 795 AGEFDDIPEMTGIISSPFAKLQRLRLERLRNLKSIYWKPLPLPRLKELEFRGCDSLKKLPLD 856 (906)
Q Consensus 795 ~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~Lp~~ 856 (906)
......+++|+.|.+. +..|-.+|....-+|.|+.|++++.|+|..-|--
T Consensus 332 -----------PEglcRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 332 -----------PEGLCRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred -----------chhhhhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcCccCCCCc
Confidence 1345567888888886 4677788877777899999999999998876653
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.3e-21 Score=205.74 Aligned_cols=253 Identities=16% Similarity=0.219 Sum_probs=137.5
Q ss_pred ccceeeeEEeccccCCCCCCCCCCC-CCceEEEeecCCCccccccccCCCCceeEEEccCccccccccc-ccccccccce
Q 002569 513 RGWEIVRRLSLMRNSIDNLPTVPTC-PHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPM-GISKLVSLQL 590 (906)
Q Consensus 513 ~~~~~lr~L~l~~~~~~~l~~~~~~-~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~ 590 (906)
.++++++.+++..|.+..+|.+... .+|+.|+|.+|.++.+....+.-++.||.||||.| .|..+|. ++..-.++++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKK 177 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceE
Confidence 3445555555555555555544332 33566666666555555555555566666666666 5555542 3444455666
Q ss_pred eecccCcccccC-hhhhCCCCCcEecccccccccccChhhhcCCCCCceeecccccccCCCCCCCccccccHHhhcCCCC
Q 002569 591 LDISKTSVVELP-EELKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFAIGVRSPYGLSSSWHENVAEELLGLKY 669 (906)
Q Consensus 591 L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 669 (906)
|+|++|+|+.+- ..|.+|.+|-+|.|+.| .++.+|...|.+|++|+.|++..|.+.- ...-.+.+|+.
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~iri----------ve~ltFqgL~S 246 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRI----------VEGLTFQGLPS 246 (873)
T ss_pred EeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceee----------ehhhhhcCchh
Confidence 666666666552 34555556666666655 4556665555556666666665442210 11123445555
Q ss_pred ccEEEEEEechhhHHHHhhcccccccceeeEecccCCCcccccccccccCCCcEEEecCCCCCCceeeecccccccCCCc
Q 002569 670 LEVLEITFRSFKAYQTFLSSQKLRSCTQALLLDEFDREESIDVADLADLEQLNTLSFVGCDWPGGLRIDYKDMVQKSRQP 749 (906)
Q Consensus 670 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~ 749 (906)
|+.|.+..|++..++..... .+..++.|+|+.|. ...+.-.++.+++.|+.|+++.|.+...-...|.
T Consensus 247 l~nlklqrN~I~kL~DG~Fy--~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws--------- 314 (873)
T KOG4194|consen 247 LQNLKLQRNDISKLDDGAFY--GLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS--------- 314 (873)
T ss_pred hhhhhhhhcCcccccCccee--eecccceeecccch-hhhhhcccccccchhhhhccchhhhheeecchhh---------
Confidence 55555555555444332111 13456666666654 2333335566677777777777766554334443
Q ss_pred ccCCCCCEEEEecCCCCCCchh--hhcCCCccEEeeecCcchHHH
Q 002569 750 YVFRSLEEVTVDSCRNLKHLTF--LVFAPNLKSISVRYCNDMEEI 792 (906)
Q Consensus 750 ~~~~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~i 792 (906)
..++|+.|+|+++ .++.++. +..+..|+.|.|+.+ .++.+
T Consensus 315 -ftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~N-si~~l 356 (873)
T KOG4194|consen 315 -FTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHN-SIDHL 356 (873)
T ss_pred -hcccceeEecccc-ccccCChhHHHHHHHhhhhccccc-chHHH
Confidence 3567777777766 5665553 555666777777664 44444
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=1.7e-21 Score=205.04 Aligned_cols=314 Identities=21% Similarity=0.242 Sum_probs=235.8
Q ss_pred EEEcCCCccccCCCcccceeeeEEeccccCCCCCC--CCCCCCCceEEEeecCCCccccccccCCCCceeEEEccCcccc
Q 002569 498 LVYAGSGLTEAPADVRGWEIVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETL 575 (906)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i 575 (906)
+....+.++.+|.-.....++..|++..|.|..+. .+.-++.||+|+|+.|.++.++...|..-.++++|+|++| .|
T Consensus 107 v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~I 185 (873)
T KOG4194|consen 107 VNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RI 185 (873)
T ss_pred eeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-cc
Confidence 33455567778555555667999999999998876 4677899999999999999999888888889999999999 88
Q ss_pred ccc-ccccccccccceeecccCcccccCh-hhhCCCCCcEecccccccccccChhhhcCCCCCceeecccccccCCCCCC
Q 002569 576 RQL-PMGISKLVSLQLLDISKTSVVELPE-ELKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFAIGVRSPYGLS 653 (906)
Q Consensus 576 ~~l-p~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~ 653 (906)
+.+ -..|.+|.+|-+|.|+.|+++.+|. .|.+|++|+.|+|..| .+..+..-.|.+|++|+.|.+..|++...
T Consensus 186 t~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL---- 260 (873)
T KOG4194|consen 186 TTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKL---- 260 (873)
T ss_pred cccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccc----
Confidence 887 4568889999999999999999986 4556999999999988 56655444488999999999988754431
Q ss_pred CccccccHHhhcCCCCccEEEEEEechhhHHHHhhcccccccceeeEecccCCCcccccccccccCCCcEEEecCCCCCC
Q 002569 654 SSWHENVAEELLGLKYLEVLEITFRSFKAYQTFLSSQKLRSCTQALLLDEFDREESIDVADLADLEQLNTLSFVGCDWPG 733 (906)
Q Consensus 654 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 733 (906)
.-..+..+.++++|++..|++..+..- ..-.+++|+.|+++.|. ...+...+....+.|+.|+++.|....
T Consensus 261 ------~DG~Fy~l~kme~l~L~~N~l~~vn~g--~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 261 ------DDGAFYGLEKMEHLNLETNRLQAVNEG--WLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred ------cCcceeeecccceeecccchhhhhhcc--cccccchhhhhccchhh-hheeecchhhhcccceeEecccccccc
Confidence 112356788899999999998776541 12234688999999886 444555667778899999999998765
Q ss_pred ceeeecccccccCCCcccCCCCCEEEEecCCCCCCch--hhhcCCCccEEeeecCcchHHHhhcCCCCCcCcccCcCCCc
Q 002569 734 GLRIDYKDMVQKSRQPYVFRSLEEVTVDSCRNLKHLT--FLVFAPNLKSISVRYCNDMEEIISAGEFDDIPEMTGIISSP 811 (906)
Q Consensus 734 ~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~l~~~~~~~ 811 (906)
++.... ..+..|+.|.|+.+ .++++. .+..+.+|+.|+|+++. +.-.+++. . ....+
T Consensus 332 -l~~~sf---------~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~-ls~~IEDa---a------~~f~g 390 (873)
T KOG4194|consen 332 -LDEGSF---------RVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIEDA---A------VAFNG 390 (873)
T ss_pred -CChhHH---------HHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCe-EEEEEecc---h------hhhcc
Confidence 222222 35778999999988 666665 36678999999998864 22222211 0 23456
Q ss_pred CCCccEEecCCccccccccCC-CCCCCCccEEeecCCC
Q 002569 812 FAKLQRLRLERLRNLKSIYWK-PLPLPRLKELEFRGCD 848 (906)
Q Consensus 812 ~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~ 848 (906)
+|+|++|.+.+ .+++.++.. ...+++|+.|++.+.+
T Consensus 391 l~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 391 LPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred chhhhheeecC-ceeeecchhhhccCcccceecCCCCc
Confidence 99999999998 578887753 4558888888887653
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=1.4e-19 Score=225.94 Aligned_cols=355 Identities=17% Similarity=0.203 Sum_probs=205.5
Q ss_pred eeechhhHhHhhhhcccccEEEEcCCCcccc-C-------CCcccceeeeEEeccccCCCCCC----CCCCCCCceEEEe
Q 002569 478 VVRDMALWITCEIEKEKEGFLVYAGSGLTEA-P-------ADVRGWEIVRRLSLMRNSIDNLP----TVPTCPHLLTLFL 545 (906)
Q Consensus 478 lv~d~a~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~lr~L~l~~~~~~~l~----~~~~~~~Lr~L~l 545 (906)
-|||+.+..+++....+. ...+....-+ + .......+++.+++..+.+..+. .+..+++|+.|.+
T Consensus 489 ~MHdLl~~~~r~i~~~~~---~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~ 565 (1153)
T PLN03210 489 EMHSLLQEMGKEIVRAQS---NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKF 565 (1153)
T ss_pred EhhhHHHHHHHHHHHhhc---CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEE
Confidence 478888888877433221 1111111111 0 01123356777776655444322 3566777777776
Q ss_pred ecCCC-------ccccccccCCCCceeEEEccCcccccccccccccccccceeecccCcccccChhhhCCCCCcEecccc
Q 002569 546 NRNPL-------RTITGGFFQSMSCLTVLKMSDNETLRQLPMGISKLVSLQLLDISKTSVVELPEELKALVNLKCLNLDW 618 (906)
Q Consensus 546 ~~~~l-------~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~ 618 (906)
..+.. ..+|.++..-..+|++|++.++ .++.+|..+ ...+|+.|++++|++..+|..+..+++|+.|++++
T Consensus 566 ~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~ 643 (1153)
T PLN03210 566 YTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRG 643 (1153)
T ss_pred ecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCC
Confidence 54421 1233332222235677777666 666666555 45667777777776666666666677777777766
Q ss_pred cccccccChhhhcCCCCCceeecccccccCCCCCCCccccccHHhhcCCCCccEEEEEEec-hhhHHHHhhcccccccce
Q 002569 619 AKELVVVPQQLLSNFSRLRVLRMFAIGVRSPYGLSSSWHENVAEELLGLKYLEVLEITFRS-FKAYQTFLSSQKLRSCTQ 697 (906)
Q Consensus 619 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~ 697 (906)
|..+..+|. ++.+++|++|++.+|.. ....+..++.+++|+.|+++.+. +..++... .+++|+
T Consensus 644 ~~~l~~ip~--ls~l~~Le~L~L~~c~~----------L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i----~l~sL~ 707 (1153)
T PLN03210 644 SKNLKEIPD--LSMATNLETLKLSDCSS----------LVELPSSIQYLNKLEDLDMSRCENLEILPTGI----NLKSLY 707 (1153)
T ss_pred CCCcCcCCc--cccCCcccEEEecCCCC----------ccccchhhhccCCCCEEeCCCCCCcCccCCcC----CCCCCC
Confidence 655666664 56666777777665521 12244455666666666666432 22222111 234666
Q ss_pred eeEecccCCCcccccccccccCCCcEEEecCCCCCCceeeecccccc--------------------cC-CCcccCCCCC
Q 002569 698 ALLLDEFDREESIDVADLADLEQLNTLSFVGCDWPGGLRIDYKDMVQ--------------------KS-RQPYVFRSLE 756 (906)
Q Consensus 698 ~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~--------------------l~-~~~~~~~~L~ 756 (906)
.|.+++|.....++. ..++|+.|++++|.... +|... ...+ ++ .....+++|+
T Consensus 708 ~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 708 RLNLSGCSRLKSFPD----ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred EEeCCCCCCcccccc----ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhccccch
Confidence 666666654333321 12455555555554322 21110 0000 00 0112357899
Q ss_pred EEEEecCCCCCCchh-hhcCCCccEEeeecCcchHHHhhcCCCCCcCcccCcCCCcCCCccEEecCCcccccc-------
Q 002569 757 EVTVDSCRNLKHLTF-LVFAPNLKSISVRYCNDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLERLRNLKS------- 828 (906)
Q Consensus 757 ~L~l~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~------- 828 (906)
.|++++|+.+..+|. ++.+++|+.|+|++|..++.++.. ..+++|+.|++++|.++..
T Consensus 782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~--------------~~L~sL~~L~Ls~c~~L~~~p~~~~n 847 (1153)
T PLN03210 782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG--------------INLESLESLDLSGCSRLRTFPDISTN 847 (1153)
T ss_pred heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC--------------CCccccCEEECCCCCccccccccccc
Confidence 999999988888874 889999999999999887765321 1355666666666555443
Q ss_pred -------------ccCCCCCCCCccEEeecCCCCCCCcCCCCCC-CCCcceEEEccccc
Q 002569 829 -------------IYWKPLPLPRLKELEFRGCDSLKKLPLDSNS-ANGRRILIRGGEYW 873 (906)
Q Consensus 829 -------------~~~~~~~~~~L~~L~i~~c~~L~~Lp~~~n~-~~l~~~~i~~~~~~ 873 (906)
+|.....+++|+.|++.+|++|+.+|..... ..++.+.+.+|...
T Consensus 848 L~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 848 ISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred cCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 3334456889999999999999999987554 46667778887654
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=3.4e-22 Score=211.18 Aligned_cols=295 Identities=19% Similarity=0.208 Sum_probs=216.7
Q ss_pred ccCCCcccceeeeEEeccccCCCCCC-CCCCCCCceEEEeecCCCccccccccCCCCceeEEEccCcccccccccccccc
Q 002569 507 EAPADVRGWEIVRRLSLMRNSIDNLP-TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPMGISKL 585 (906)
Q Consensus 507 ~~~~~~~~~~~lr~L~l~~~~~~~l~-~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L 585 (906)
.+|+.+.++..+..|+++.|.+.+.| .+..-+++-+|+|++|.+..||...|-++..|-+||||+| .++.+|..+..|
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRL 172 (1255)
T ss_pred CCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHH
Confidence 46788888888888999888888888 5667788888999998888888888888888889999988 888888888888
Q ss_pred cccceeecccCccccc-ChhhhCCCCCcEeccccccc-ccccChhhhcCCCCCceeecccccccCCCCCCCccccccHHh
Q 002569 586 VSLQLLDISKTSVVEL-PEELKALVNLKCLNLDWAKE-LVVVPQQLLSNFSRLRVLRMFAIGVRSPYGLSSSWHENVAEE 663 (906)
Q Consensus 586 ~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~-l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 663 (906)
.+|++|+|++|.+..+ -..+..+++|++|.++++.. +..+|.. +..|.||+.++++.|.+ ..+++.
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~L-----------p~vPec 240 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNL-----------PIVPEC 240 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCC-----------CcchHH
Confidence 9999999988854421 12233677888888887653 4567876 78888888888887632 347888
Q ss_pred hcCCCCccEEEEEEechhhHHHHhhcccccccceeeEecccCCCcccccccccccCCCcEEEecCCCCCCceeeeccccc
Q 002569 664 LLGLKYLEVLEITFRSFKAYQTFLSSQKLRSCTQALLLDEFDREESIDVADLADLEQLNTLSFVGCDWPGGLRIDYKDMV 743 (906)
Q Consensus 664 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~ 743 (906)
+..+++|+.|+++.|.++.+.. ....+..+++|+++.|. +..++ ..+.+++.|+.|.+.+|...-.
T Consensus 241 ly~l~~LrrLNLS~N~iteL~~---~~~~W~~lEtLNlSrNQ-Lt~LP-~avcKL~kL~kLy~n~NkL~Fe--------- 306 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITELNM---TEGEWENLETLNLSRNQ-LTVLP-DAVCKLTKLTKLYANNNKLTFE--------- 306 (1255)
T ss_pred HhhhhhhheeccCcCceeeeec---cHHHHhhhhhhccccch-hccch-HHHhhhHHHHHHHhccCccccc---------
Confidence 8889999999999888765432 12234578888888776 44444 5677888999998887764321
Q ss_pred ccCCCcccCCCCCEEEEecCCCCCCch-hhhcCCCccEEeeecCcchHHHhhcCCCCCcCcccCcCCCcCCCccEEecCC
Q 002569 744 QKSRQPYVFRSLEEVTVDSCRNLKHLT-FLVFAPNLKSISVRYCNDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLER 822 (906)
Q Consensus 744 ~l~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~ 822 (906)
++|+....+.+|+.+...++ ++.-+| .+..++.|+.|.|+.+..++ + | ..+.-+|.|+.|++..
T Consensus 307 GiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLiT-L---------P----eaIHlL~~l~vLDlre 371 (1255)
T KOG0444|consen 307 GIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLIT-L---------P----EAIHLLPDLKVLDLRE 371 (1255)
T ss_pred CCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccceee-c---------h----hhhhhcCCcceeeccC
Confidence 22333445778888888887 677666 48899999999998765443 2 1 3566789999999999
Q ss_pred ccccccccCCCCCCCCccEEe
Q 002569 823 LRNLKSIYWKPLPLPRLKELE 843 (906)
Q Consensus 823 ~~~l~~~~~~~~~~~~L~~L~ 843 (906)
.++|-.-|.....-.+|+.-+
T Consensus 372 NpnLVMPPKP~da~~~lefYN 392 (1255)
T KOG0444|consen 372 NPNLVMPPKPNDARKKLEFYN 392 (1255)
T ss_pred CcCccCCCCcchhhhcceeee
Confidence 988865554333333444433
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=6.8e-20 Score=184.88 Aligned_cols=318 Identities=20% Similarity=0.285 Sum_probs=198.7
Q ss_pred cCCCccccCCCcccceeeeEEeccccCCCCCCCCCCCCCceEEEeecCCCccccccccCCCCceeEEEccCccccccccc
Q 002569 501 AGSGLTEAPADVRGWEIVRRLSLMRNSIDNLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPM 580 (906)
Q Consensus 501 ~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~ 580 (906)
..+-++.+|+.++.++++..|++..|++..+|.|+.|..|..|++..|.++.+|....+++.+|.+|||.+| .++++|.
T Consensus 191 ~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pd 269 (565)
T KOG0472|consen 191 NSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPD 269 (565)
T ss_pred chhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCch
Confidence 445567889999999999999999999999999999999999999999999999998889999999999999 9999999
Q ss_pred ccccccccceeecccCcccccChhhhCCCCCcEecccccccccccChhhhcCCCC--Cceeecc--cccccCCCC---CC
Q 002569 581 GISKLVSLQLLDISKTSVVELPEELKALVNLKCLNLDWAKELVVVPQQLLSNFSR--LRVLRMF--AIGVRSPYG---LS 653 (906)
Q Consensus 581 ~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~--L~~L~l~--~~~~~~~~~---~~ 653 (906)
.++.|.+|.+||+|+|.|+.+|.++++| +|+.|-+.|| -+..+-..++++=+. |++|+-. .-|.....+ ..
T Consensus 270 e~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGN-PlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~ 347 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGN-PLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA 347 (565)
T ss_pred HHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCC-chHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence 9999999999999999999999999999 9999999999 466666654444321 4444321 111111000 00
Q ss_pred CccccccHHhhcCCCCccEEEEEEechhhHHHHhhcccccccceeeEecccCC-----------------------Cccc
Q 002569 654 SSWHENVAEELLGLKYLEVLEITFRSFKAYQTFLSSQKLRSCTQALLLDEFDR-----------------------EESI 710 (906)
Q Consensus 654 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-----------------------~~~~ 710 (906)
.............+.+.+.|+++.-+++.++.-........-..+.+++.|.. ...+
T Consensus 348 ~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv 427 (565)
T KOG0472|consen 348 MTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFV 427 (565)
T ss_pred CCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccc
Confidence 00001112222333444555555444443332111111111223333333321 1111
Q ss_pred ccccccccCCCcEEEecCCCCCCceeeecccccccCCCcccCCCCCEEEEecCCCCCCchh-hhcCCCccEEeeecCcch
Q 002569 711 DVADLADLEQLNTLSFVGCDWPGGLRIDYKDMVQKSRQPYVFRSLEEVTVDSCRNLKHLTF-LVFAPNLKSISVRYCNDM 789 (906)
Q Consensus 711 ~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l 789 (906)
+ ..+..+++|..|++++|.. ..+|.+.. ++..|+.|+++.+ ..+.+|- +..+..|+.+-.++ +.+
T Consensus 428 ~-~~l~~l~kLt~L~L~NN~L-n~LP~e~~----------~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~-nqi 493 (565)
T KOG0472|consen 428 P-LELSQLQKLTFLDLSNNLL-NDLPEEMG----------SLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASN-NQI 493 (565)
T ss_pred h-HHHHhhhcceeeecccchh-hhcchhhh----------hhhhhheeccccc-ccccchHHHhhHHHHHHHHhcc-ccc
Confidence 1 2344556666667665533 22333332 3455777777665 4444443 22333333333333 233
Q ss_pred HHHhhcCCCCCcCcccCcCCCcCCCccEEecCCccccccccCCCCCCCCccEEeecCCC
Q 002569 790 EEIISAGEFDDIPEMTGIISSPFAKLQRLRLERLRNLKSIYWKPLPLPRLKELEFRGCD 848 (906)
Q Consensus 790 ~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 848 (906)
..+.. .....+.+|..|++.+ ..++.+|...++|.+|++|.+.+.|
T Consensus 494 ~~vd~------------~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 494 GSVDP------------SGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred cccCh------------HHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 33221 2245677777787776 4678888877878888887777654
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=2.4e-19 Score=180.99 Aligned_cols=374 Identities=20% Similarity=0.193 Sum_probs=205.9
Q ss_pred CCccccCCCcccceeeeEEeccccCCCCCC-CCCCCCCceEEEeecCCCccccccccCCCCceeEEEccCcccccccccc
Q 002569 503 SGLTEAPADVRGWEIVRRLSLMRNSIDNLP-TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPMG 581 (906)
Q Consensus 503 ~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~-~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~ 581 (906)
+.+.++|+.+.....+++++++.|.+..++ .+..+..|..|+..+|.+..+|++ +.++.+|..|++.+| .++.+|+.
T Consensus 101 n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~-~~~~~~l~~l~~~~n-~l~~l~~~ 178 (565)
T KOG0472|consen 101 NKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPED-MVNLSKLSKLDLEGN-KLKALPEN 178 (565)
T ss_pred chHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchH-HHHHHHHHHhhcccc-chhhCCHH
Confidence 334444444444455555555555555444 344455555555555555555554 344555555555555 55555555
Q ss_pred cccccccceeecccCcccccChhhhCCCCCcEecccccccccccChhhhcCCCCCceeecccccccCCCCCCCccccccH
Q 002569 582 ISKLVSLQLLDISKTSVVELPEELKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFAIGVRSPYGLSSSWHENVA 661 (906)
Q Consensus 582 i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 661 (906)
.-+++.|+.||...|-+..+|..++.|.+|..|+++.| .+..+|+ |.+|..|.+|+++.|. ..-.+
T Consensus 179 ~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPe--f~gcs~L~Elh~g~N~-----------i~~lp 244 (565)
T KOG0472|consen 179 HIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRN-KIRFLPE--FPGCSLLKELHVGENQ-----------IEMLP 244 (565)
T ss_pred HHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhc-ccccCCC--CCccHHHHHHHhcccH-----------HHhhH
Confidence 44455555555555555555555555555555555555 4555553 5555555555555431 11233
Q ss_pred Hh-hcCCCCccEEEEEEechhhHHHHhhcccccccceeeEecccCCCcccccccccccCCCcEEEecCCCCCCcee----
Q 002569 662 EE-LLGLKYLEVLEITFRSFKAYQTFLSSQKLRSCTQALLLDEFDREESIDVADLADLEQLNTLSFVGCDWPGGLR---- 736 (906)
Q Consensus 662 ~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~---- 736 (906)
.+ +..+++|.+|++..|.++.++.-.. +.++|..|++++|. ...++ .+++++ +|+.|.+.||+.-+.-.
T Consensus 245 ae~~~~L~~l~vLDLRdNklke~Pde~c---lLrsL~rLDlSNN~-is~Lp-~sLgnl-hL~~L~leGNPlrTiRr~ii~ 318 (565)
T KOG0472|consen 245 AEHLKHLNSLLVLDLRDNKLKEVPDEIC---LLRSLERLDLSNND-ISSLP-YSLGNL-HLKFLALEGNPLRTIRREIIS 318 (565)
T ss_pred HHHhcccccceeeeccccccccCchHHH---HhhhhhhhcccCCc-cccCC-cccccc-eeeehhhcCCchHHHHHHHHc
Confidence 33 4588999999999999888776444 34588999999876 44554 467788 89999999986422100
Q ss_pred -----------e----eccccc--------ccCCC----cccCCCCCEEEEecCCCCCCchh----hhcCCCccEEeeec
Q 002569 737 -----------I----DYKDMV--------QKSRQ----PYVFRSLEEVTVDSCRNLKHLTF----LVFAPNLKSISVRY 785 (906)
Q Consensus 737 -----------~----~~~~~~--------~l~~~----~~~~~~L~~L~l~~c~~l~~l~~----l~~l~~L~~L~L~~ 785 (906)
. +..+.+ ..+.. .....+.+.|.+++- +++.+|. .+.-.-....+++.
T Consensus 319 ~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~Vnfsk 397 (565)
T KOG0472|consen 319 KGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSK 397 (565)
T ss_pred ccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceEEEeccc
Confidence 0 000000 00110 112234566666654 5555553 12222345555555
Q ss_pred CcchHHHhhcCC-----------CCCcCcccCcCCCcCCCccEEecCCccccccccCCCCCCCCccEEeecCCCCCCCcC
Q 002569 786 CNDMEEIISAGE-----------FDDIPEMTGIISSPFAKLQRLRLERLRNLKSIYWKPLPLPRLKELEFRGCDSLKKLP 854 (906)
Q Consensus 786 c~~l~~i~~~~~-----------~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~Lp 854 (906)
+ .+.+++..-. ....-.+.+.....+++|..|++++ .-|..+|...+.+-.|+.|+++.. ..+.+|
T Consensus 398 N-qL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP 474 (565)
T KOG0472|consen 398 N-QLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFN-RFRMLP 474 (565)
T ss_pred c-hHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheeccccc-ccccch
Confidence 3 3333322100 0000112224556788888888886 346778887788888888888753 344444
Q ss_pred CC-------------CCCCCCcceEEE--cccccccccccCcccchhhhccCCccc---cceeeccCCC
Q 002569 855 LD-------------SNSANGRRILIR--GGEYWWRGLQWKDEATQNAFRLCFQSL---DELWLEGLSP 905 (906)
Q Consensus 855 ~~-------------~n~~~l~~~~i~--~~~~~~~~l~~~~~~~~~~~~~~~~~l---~~l~l~~~~~ 905 (906)
-- .|+.. .+... .+-.-+..|++.+|.++. +||.+.+. +.|.+.|.|-
T Consensus 475 ~~~y~lq~lEtllas~nqi~--~vd~~~l~nm~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 475 ECLYELQTLETLLASNNQIG--SVDPSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred HHHhhHHHHHHHHhcccccc--ccChHHhhhhhhcceeccCCCchhh-CChhhccccceeEEEecCCcc
Confidence 21 12211 11111 223455678888888887 88876665 7778888773
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=6.9e-18 Score=150.76 Aligned_cols=164 Identities=21% Similarity=0.335 Sum_probs=138.4
Q ss_pred CCcccceeeeEEeccccCCCCCC-CCCCCCCceEEEeecCCCccccccccCCCCceeEEEccCccccccccccccccccc
Q 002569 510 ADVRGWEIVRRLSLMRNSIDNLP-TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPMGISKLVSL 588 (906)
Q Consensus 510 ~~~~~~~~lr~L~l~~~~~~~l~-~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L 588 (906)
+.+..++++++|.++.|.+..+| .+..+.+|++|++++|.++++|.+ ++.+++|+.|++.-| .+..+|.+||.++-|
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGSFPAL 104 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCCCchh
Confidence 45566788889999999888776 678899999999999999988887 788999999999988 888899999999999
Q ss_pred ceeecccCccc--ccChhhhCCCCCcEecccccccccccChhhhcCCCCCceeecccccccCCCCCCCccccccHHhhcC
Q 002569 589 QLLDISKTSVV--ELPEELKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFAIGVRSPYGLSSSWHENVAEELLG 666 (906)
Q Consensus 589 ~~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~ 666 (906)
+.|||.+|++. .+|..+..++.|+-|+++.| ..+.+|+. ++++++|+.|.+..| .....+.+++.
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdn-----------dll~lpkeig~ 171 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDN-----------DLLSLPKEIGD 171 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccC-----------chhhCcHHHHH
Confidence 99999998777 68988888899999999988 56788887 899999999988876 23347888999
Q ss_pred CCCccEEEEEEechhhHHHHhh
Q 002569 667 LKYLEVLEITFRSFKAYQTFLS 688 (906)
Q Consensus 667 l~~L~~L~l~~~~~~~~~~~~~ 688 (906)
++.|+.|+|.+|.++.+++-+.
T Consensus 172 lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 172 LTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred HHHHHHHhcccceeeecChhhh
Confidence 9999999999888877665433
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=3.3e-15 Score=172.66 Aligned_cols=264 Identities=22% Similarity=0.181 Sum_probs=187.1
Q ss_pred HhHhhhhcccccEEEEcCCCccccCCCcccceeeeEEeccccCCCCCCCCCCCCCceEEEeecCCCccccccccCCCCce
Q 002569 485 WITCEIEKEKEGFLVYAGSGLTEAPADVRGWEIVRRLSLMRNSIDNLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCL 564 (906)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L 564 (906)
...+++..+....+..++.+++.+|+.+. .+++.|++.+|.+..+|.. +++|++|++++|.++.+|.. .++|
T Consensus 193 ~r~~~Cl~~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL 264 (788)
T PRK15387 193 QKMRACLNNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGL 264 (788)
T ss_pred HHHHHHhcCCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----cccc
Confidence 33334334445677778888888877664 4799999999999998864 58999999999999988752 4689
Q ss_pred eEEEccCcccccccccccccccccceeecccCcccccChhhhCCCCCcEecccccccccccChhhhcCCCCCceeecccc
Q 002569 565 TVLKMSDNETLRQLPMGISKLVSLQLLDISKTSVVELPEELKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFAI 644 (906)
Q Consensus 565 ~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 644 (906)
+.|+|++| .+..+|... .+|+.|++++|+++.+|.. +++|++|++++| .+..+|.. . .+|+.|++.+|
T Consensus 265 ~~L~Ls~N-~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l-p---~~L~~L~Ls~N 332 (788)
T PRK15387 265 LELSIFSN-PLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL-P---SELCKLWAYNN 332 (788)
T ss_pred ceeeccCC-chhhhhhch---hhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC-c---ccccccccccC
Confidence 99999999 888888633 5688999999999999863 578999999998 67777752 2 35778888877
Q ss_pred cccCCCCCCCccccccHHhhcCCCCccEEEEEEechhhHHHHhhcccccccceeeEecccCCCcccccccccccCCCcEE
Q 002569 645 GVRSPYGLSSSWHENVAEELLGLKYLEVLEITFRSFKAYQTFLSSQKLRSCTQALLLDEFDREESIDVADLADLEQLNTL 724 (906)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L 724 (906)
.+.. .+. ...+|+.|+++.|.+..++.. ..+|+.|++++|.. ..++ .+ +.+|+.|
T Consensus 333 ~L~~-----------LP~---lp~~Lq~LdLS~N~Ls~LP~l------p~~L~~L~Ls~N~L-~~LP--~l--~~~L~~L 387 (788)
T PRK15387 333 QLTS-----------LPT---LPSGLQELSVSDNQLASLPTL------PSELYKLWAYNNRL-TSLP--AL--PSGLKEL 387 (788)
T ss_pred cccc-----------ccc---cccccceEecCCCccCCCCCC------Ccccceehhhcccc-ccCc--cc--ccccceE
Confidence 4432 110 124788999999988776542 24677788877653 2332 11 3578899
Q ss_pred EecCCCCCCceeeecccccccCCCcccCCCCCEEEEecCCCCCCchhhhcCCCccEEeeecCcchHHHhhcCCCCCcCcc
Q 002569 725 SFVGCDWPGGLRIDYKDMVQKSRQPYVFRSLEEVTVDSCRNLKHLTFLVFAPNLKSISVRYCNDMEEIISAGEFDDIPEM 804 (906)
Q Consensus 725 ~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~l 804 (906)
++++|.... ++. .+++|+.|+++++ .+..+|.+ +.+|+.|++++|. ++.++
T Consensus 388 dLs~N~Lt~-LP~-------------l~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~Nq-Lt~LP----------- 438 (788)
T PRK15387 388 IVSGNRLTS-LPV-------------LPSELKELMVSGN-RLTSLPML--PSGLLSLSVYRNQ-LTRLP----------- 438 (788)
T ss_pred EecCCcccC-CCC-------------cccCCCEEEccCC-cCCCCCcc--hhhhhhhhhccCc-ccccC-----------
Confidence 998886543 211 2357888888888 57777653 4578888888753 44332
Q ss_pred cCcCCCcCCCccEEecCCcc
Q 002569 805 TGIISSPFAKLQRLRLERLR 824 (906)
Q Consensus 805 ~~~~~~~~~~L~~L~l~~~~ 824 (906)
.....+++|+.|++++++
T Consensus 439 --~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 439 --ESLIHLSSETTVNLEGNP 456 (788)
T ss_pred --hHHhhccCCCeEECCCCC
Confidence 123457788888887754
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.59 E-value=2.3e-17 Score=183.76 Aligned_cols=101 Identities=30% Similarity=0.429 Sum_probs=81.1
Q ss_pred eeeEEeccccCCCCCC-CCCCCCCceEEEeecCCCccccccccCCCCceeEEEccCcccccccccccccccccceeeccc
Q 002569 517 IVRRLSLMRNSIDNLP-TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPMGISKLVSLQLLDISK 595 (906)
Q Consensus 517 ~lr~L~l~~~~~~~l~-~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~ 595 (906)
++.+|++++|.+..+| .+..+++|+.|.++.|.+..+|.. ..++.+|++|.|.+| .+..+|.++..+.+|++|++++
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccc-hhhcCchhHHhhhcccccccch
Confidence 5888899998888888 677888899999999988888855 778899999999988 8888999999999999999999
Q ss_pred CcccccChhhhCCCCCcEeccccc
Q 002569 596 TSVVELPEELKALVNLKCLNLDWA 619 (906)
Q Consensus 596 ~~i~~lp~~i~~L~~L~~L~l~~~ 619 (906)
|.+..+|..+..+..+..++.++|
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcc
Confidence 988888865555444444444443
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.57 E-value=7.1e-17 Score=179.90 Aligned_cols=69 Identities=25% Similarity=0.378 Sum_probs=36.3
Q ss_pred CCccccCCCcccceeeeEEeccccCCCCCC-CCCCCCCceEEEeecCCCccccccccCCCCceeEEEccCc
Q 002569 503 SGLTEAPADVRGWEIVRRLSLMRNSIDNLP-TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDN 572 (906)
Q Consensus 503 ~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~-~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~ 572 (906)
+.+...|..+..+.+++.|.++.|.+..+| ...++.+|++|.|.+|.+...|.+ +..+++|++||+++|
T Consensus 55 n~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~-~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 55 NQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPAS-ISELKNLQYLDLSFN 124 (1081)
T ss_pred cccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchh-HHhhhcccccccchh
Confidence 333334444444555566666665555555 334555555555555555555444 455555555555555
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=1e-14 Score=169.95 Aligned_cols=239 Identities=23% Similarity=0.264 Sum_probs=141.1
Q ss_pred EEEcCCCccccCCCcccceeeeEEeccccCCCCCCCCCCCCCceEEEeecCCCccccccccCCCCceeEEEccCcccccc
Q 002569 498 LVYAGSGLTEAPADVRGWEIVRRLSLMRNSIDNLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQ 577 (906)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~ 577 (906)
+...+.+++.+|..+. +.++.|++++|.+..+|.. .+++|++|++++|.++.+|..+. .+|+.|+|++| .+..
T Consensus 183 L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N-~L~~ 255 (754)
T PRK15370 183 LRLKILGLTTIPACIP--EQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATLP---DTIQEMELSIN-RITE 255 (754)
T ss_pred EEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhhh---ccccEEECcCC-ccCc
Confidence 3444555666654432 4677778888877777642 23578888888877777765432 36777888887 6777
Q ss_pred cccccccccccceeecccCcccccChhhhCCCCCcEecccccccccccChhhhcCCCCCceeecccccccCCCCCCCccc
Q 002569 578 LPMGISKLVSLQLLDISKTSVVELPEELKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFAIGVRSPYGLSSSWH 657 (906)
Q Consensus 578 lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 657 (906)
+|..+. .+|++|++++|+++.+|..+. .+|++|++++| .+..+|.. +. ++|+.|++++|.+..
T Consensus 256 LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~--------- 318 (754)
T PRK15370 256 LPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSLTA--------- 318 (754)
T ss_pred CChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCcccc---------
Confidence 776654 467888888877777776554 47788888777 56667654 22 367777777664331
Q ss_pred cccHHhhcCCCCccEEEEEEechhhHHHHhhcccccccceeeEecccCCCcccccccccccCCCcEEEecCCCCCCceee
Q 002569 658 ENVAEELLGLKYLEVLEITFRSFKAYQTFLSSQKLRSCTQALLLDEFDREESIDVADLADLEQLNTLSFVGCDWPGGLRI 737 (906)
Q Consensus 658 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~ 737 (906)
.+..+ .++|+.|+++.|.+..++.. +.++|+.|++++|.. ..++ ..+ .++|++|+|++|.... ++.
T Consensus 319 --LP~~l--~~sL~~L~Ls~N~Lt~LP~~-----l~~sL~~L~Ls~N~L-~~LP-~~l--p~~L~~LdLs~N~Lt~-LP~ 384 (754)
T PRK15370 319 --LPETL--PPGLKTLEAGENALTSLPAS-----LPPELQVLDVSKNQI-TVLP-ETL--PPTITTLDVSRNALTN-LPE 384 (754)
T ss_pred --CCccc--cccceeccccCCccccCChh-----hcCcccEEECCCCCC-CcCC-hhh--cCCcCEEECCCCcCCC-CCH
Confidence 11111 24667777777666554431 124666777766642 2222 112 2466777777665442 221
Q ss_pred ecccccccCCCcccCCCCCEEEEecCCCCCCchh-----hhcCCCccEEeeecCc
Q 002569 738 DYKDMVQKSRQPYVFRSLEEVTVDSCRNLKHLTF-----LVFAPNLKSISVRYCN 787 (906)
Q Consensus 738 ~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-----l~~l~~L~~L~L~~c~ 787 (906)
. ....|+.|++++| ++..+|. ...++++..|+|.+|+
T Consensus 385 ~------------l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 385 N------------LPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred h------------HHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 1 1124666666665 4554442 2334666666666654
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=5.1e-16 Score=138.88 Aligned_cols=145 Identities=28% Similarity=0.461 Sum_probs=132.5
Q ss_pred EEEcCCCccccCCCcccceeeeEEeccccCCCCCC-CCCCCCCceEEEeecCCCccccccccCCCCceeEEEccCccccc
Q 002569 498 LVYAGSGLTEAPADVRGWEIVRRLSLMRNSIDNLP-TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLR 576 (906)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~-~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~ 576 (906)
+..+++.++.+||.+..+.+++.|.+.+|+++++| .++.+++||.|++.-|.+..+|.+ |+.++.|++|||++| ++.
T Consensus 38 LtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltyn-nl~ 115 (264)
T KOG0617|consen 38 LTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYN-NLN 115 (264)
T ss_pred hhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhcccc-ccc
Confidence 45567788888999999999999999999999999 678999999999999999888887 899999999999999 665
Q ss_pred --ccccccccccccceeecccCcccccChhhhCCCCCcEecccccccccccChhhhcCCCCCceeecccccc
Q 002569 577 --QLPMGISKLVSLQLLDISKTSVVELPEELKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFAIGV 646 (906)
Q Consensus 577 --~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 646 (906)
.+|..|..|..|+.|.|+.|.+..+|..+++|++||.|.++.| .+-++|.+ ++.++.|++|++.+|.+
T Consensus 116 e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 116 ENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNRL 185 (264)
T ss_pred cccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhccccee
Confidence 4899999999999999999999999999999999999999999 57789998 89999999999998743
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=1.3e-13 Score=159.65 Aligned_cols=254 Identities=21% Similarity=0.173 Sum_probs=185.4
Q ss_pred eeEEeccccCCCCCCCCCCCCCceEEEeecCCCccccccccCCCCceeEEEccCcccccccccccccccccceeecccCc
Q 002569 518 VRRLSLMRNSIDNLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPMGISKLVSLQLLDISKTS 597 (906)
Q Consensus 518 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~ 597 (906)
-..|+++.+.+..+|... .++|+.|++.+|.++.+|. .+++|++|+|++| .++.+|.. .++|+.|++++|.
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCC----CCCCCcEEEecCC-ccCcccCc---ccccceeeccCCc
Confidence 456889999998888522 2589999999999998875 3588999999999 89999854 4688999999999
Q ss_pred ccccChhhhCCCCCcEecccccccccccChhhhcCCCCCceeecccccccCCCCCCCccccccHHhhcCCCCccEEEEEE
Q 002569 598 VVELPEELKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFAIGVRSPYGLSSSWHENVAEELLGLKYLEVLEITF 677 (906)
Q Consensus 598 i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 677 (906)
++.+|... .+|+.|++++| .+..+|.. +++|+.|++++|.+.. .+. ...+|+.|.++.
T Consensus 274 L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~~----p~~L~~LdLS~N~L~~-----------Lp~---lp~~L~~L~Ls~ 331 (788)
T PRK15387 274 LTHLPALP---SGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLAS-----------LPA---LPSELCKLWAYN 331 (788)
T ss_pred hhhhhhch---hhcCEEECcCC-cccccccc----ccccceeECCCCcccc-----------CCC---Cccccccccccc
Confidence 99988633 57889999999 67888862 4789999999875442 111 123577788888
Q ss_pred echhhHHHHhhcccccccceeeEecccCCCcccccccccccCCCcEEEecCCCCCCceeeecccccccCCCcccCCCCCE
Q 002569 678 RSFKAYQTFLSSQKLRSCTQALLLDEFDREESIDVADLADLEQLNTLSFVGCDWPGGLRIDYKDMVQKSRQPYVFRSLEE 757 (906)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~ 757 (906)
|.+..++.+ ..+|+.|+|++|.. ..++. + .++|+.|++++|.... ++. .+.+|+.
T Consensus 332 N~L~~LP~l------p~~Lq~LdLS~N~L-s~LP~--l--p~~L~~L~Ls~N~L~~-LP~-------------l~~~L~~ 386 (788)
T PRK15387 332 NQLTSLPTL------PSGLQELSVSDNQL-ASLPT--L--PSELYKLWAYNNRLTS-LPA-------------LPSGLKE 386 (788)
T ss_pred Ccccccccc------ccccceEecCCCcc-CCCCC--C--Ccccceehhhcccccc-Ccc-------------cccccce
Confidence 888766542 34789999998763 33331 2 3578888888876543 221 2357999
Q ss_pred EEEecCCCCCCchhhhcCCCccEEeeecCcchHHHhhcCCCCCcCcccCcCCCcCCCccEEecCCccccccccCCCCCCC
Q 002569 758 VTVDSCRNLKHLTFLVFAPNLKSISVRYCNDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLERLRNLKSIYWKPLPLP 837 (906)
Q Consensus 758 L~l~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 837 (906)
|+++++ .+..+|.. .++|+.|++++|. +..+ +..+.+|+.|++++ .+++.+|.....++
T Consensus 387 LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-LssI----------------P~l~~~L~~L~Ls~-NqLt~LP~sl~~L~ 445 (788)
T PRK15387 387 LIVSGN-RLTSLPVL--PSELKELMVSGNR-LTSL----------------PMLPSGLLSLSVYR-NQLTRLPESLIHLS 445 (788)
T ss_pred EEecCC-cccCCCCc--ccCCCEEEccCCc-CCCC----------------Ccchhhhhhhhhcc-CcccccChHHhhcc
Confidence 999988 67777754 4789999999974 3322 22345788888887 45777776666788
Q ss_pred CccEEeecCCC
Q 002569 838 RLKELEFRGCD 848 (906)
Q Consensus 838 ~L~~L~i~~c~ 848 (906)
+|+.|++++++
T Consensus 446 ~L~~LdLs~N~ 456 (788)
T PRK15387 446 SETTVNLEGNP 456 (788)
T ss_pred CCCeEECCCCC
Confidence 88888887753
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.46 E-value=1e-14 Score=147.86 Aligned_cols=252 Identities=21% Similarity=0.218 Sum_probs=191.5
Q ss_pred cEEEEcCCCccccCCCcccceeeeEEeccccCCCCCC--CCCCCCCceEEEeecCCCccccccccCCCCceeEEEccCcc
Q 002569 496 GFLVYAGSGLTEAPADVRGWEIVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNE 573 (906)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~ 573 (906)
..+...+.+++++|.++. .....|.+..|.|..+| .|..+++||.|+|++|.|+.|.++.|.+++.|..|-+.++.
T Consensus 49 ~~VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred ceEEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 567788899999976653 56778889999999999 68999999999999999999999999999999888887744
Q ss_pred cccccccc-cccccccceeecccCcccccC-hhhhCCCCCcEecccccccccccChhhhcCCCCCceeecccccccCCCC
Q 002569 574 TLRQLPMG-ISKLVSLQLLDISKTSVVELP-EELKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFAIGVRSPYG 651 (906)
Q Consensus 574 ~i~~lp~~-i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~ 651 (906)
.|+.+|.. |++|..|+.|.+.-|++..++ +.+..|++|..|.+..| .+..++.+.+..+.+++++.+..|.+.....
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccc
Confidence 99999865 889999999999999999764 67899999999999988 6788888778889999998887654221100
Q ss_pred CC----------------------------------------------------CccccccHHhhcCCCCccEEEEEEec
Q 002569 652 LS----------------------------------------------------SSWHENVAEELLGLKYLEVLEITFRS 679 (906)
Q Consensus 652 ~~----------------------------------------------------~~~~~~~~~~l~~l~~L~~L~l~~~~ 679 (906)
.. ..........++.|++|++|++++|.
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 00 00011123457889999999999999
Q ss_pred hhhHHHHhhcccccccceeeEecccCCCcccccccccccCCCcEEEecCCCCCCceeeecccccccCCCcccCCCCCEEE
Q 002569 680 FKAYQTFLSSQKLRSCTQALLLDEFDREESIDVADLADLEQLNTLSFVGCDWPGGLRIDYKDMVQKSRQPYVFRSLEEVT 759 (906)
Q Consensus 680 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~ 759 (906)
++.+..-.. .....++.|.|..|. +..+....|.++..|+.|++.+|.+...-+..+ ..+..|.+|.
T Consensus 286 i~~i~~~aF--e~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF----------~~~~~l~~l~ 352 (498)
T KOG4237|consen 286 ITRIEDGAF--EGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF----------QTLFSLSTLN 352 (498)
T ss_pred cchhhhhhh--cchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEecccc----------cccceeeeee
Confidence 888765222 223478888888876 344444578888999999999998765222222 1355677777
Q ss_pred EecC
Q 002569 760 VDSC 763 (906)
Q Consensus 760 l~~c 763 (906)
+-.+
T Consensus 353 l~~N 356 (498)
T KOG4237|consen 353 LLSN 356 (498)
T ss_pred hccC
Confidence 7654
No 21
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.43 E-value=1.2e-11 Score=154.16 Aligned_cols=288 Identities=16% Similarity=0.203 Sum_probs=182.7
Q ss_pred CCcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCC-cccHHHHHHHHHHH
Q 002569 158 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSK-DLQLEKIQETIGKK 236 (906)
Q Consensus 158 ~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~l~~~i~~~ 236 (906)
.+.++-|+.-.+.+ ......+++.|.|++|.||||++..+.... . .++|+++.. +.++..+...++..
T Consensus 13 ~~~~~~R~rl~~~l----~~~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 13 LHNTVVRERLLAKL----SGANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred ccccCcchHHHHHH----hcccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHH
Confidence 44567777555544 343467999999999999999999988543 2 589999864 44666666777766
Q ss_pred hCCCCCc-----------cccCCHHHHHHHHHHHhc--cCcEEEEEccccchh------hhhhcCCcCCCCcEEEEEecc
Q 002569 237 IGLYTDS-----------WKDRSLEEKAQDIFKTLS--KKKFVLLLDDLWERV------DLKKVGVPLPKNSAVVFTTRF 297 (906)
Q Consensus 237 l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~~~~~~~~gs~iivTtR~ 297 (906)
++..... ....+.......+...+. +.+++|||||+.... .+..+....+.+.++|||||.
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~ 161 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRN 161 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 6321110 011223333444444443 578999999996431 233333345568899999997
Q ss_pred cccccC--C-CccceEEec----cCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHHHHhhcCCCH
Q 002569 298 VDVCGG--M-EARRKFKVE----CLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIGRAMAYKKTP 370 (906)
Q Consensus 298 ~~v~~~--~-~~~~~~~l~----~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~ 370 (906)
..-... + ......++. +|+.+|+.++|....+... -.+...+|++.|+|+|+++..++..+......
T Consensus 162 ~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~ 235 (903)
T PRK04841 162 LPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQNNSS 235 (903)
T ss_pred CCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc
Confidence 432211 1 112344555 9999999999988766432 15667899999999999999888777543210
Q ss_pred HHHHHHHHHHhhhhhccCCC-chhhhhhHHh-hhcCCCchhhhhhhhhhccCCCCcccChhhHHHHHHhcCCcccccccc
Q 002569 371 EEWRYAIEVLRRSASEFAGL-GKEVYPLLKF-SYDCLPSDAIRSCFLYCCLYPEDYGIDKRDLIDCWMCEGFLEEDKFGT 448 (906)
Q Consensus 371 ~~w~~~~~~l~~~~~~~~~~-~~~~~~~l~~-sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~ 448 (906)
. ..... ...+. ...+...+.- .++.||+ ..+..++..|+++ .+ +. .+.. .+. .
T Consensus 236 ~--~~~~~-------~~~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~-~~--~~-~l~~-----~l~------~ 290 (903)
T PRK04841 236 L--HDSAR-------RLAGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR-SM--ND-ALIV-----RVT------G 290 (903)
T ss_pred h--hhhhH-------hhcCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc-cC--CH-HHHH-----HHc------C
Confidence 0 00011 11110 1234444433 3789998 7999999999987 22 22 1221 111 1
Q ss_pred chhhHHHHHHHHHhhcccc-c--cCCeEEEeeeeechhhHhH
Q 002569 449 QNRGYYIVGTLVHACLLEE-V--EDDQVKMHDVVRDMALWIT 487 (906)
Q Consensus 449 ~~~~~~~~~~L~~~~ll~~-~--~~~~~~mHdlv~d~a~~~~ 487 (906)
.+.+...+++|.+++++.. . +...|+.|+++++++..-.
T Consensus 291 ~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 3456788999999999653 3 3357999999999998754
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.42 E-value=2.8e-13 Score=158.11 Aligned_cols=221 Identities=21% Similarity=0.286 Sum_probs=158.3
Q ss_pred eeeEEeccccCCCCCCCCCCCCCceEEEeecCCCccccccccCCCCceeEEEccCcccccccccccccccccceeecccC
Q 002569 517 IVRRLSLMRNSIDNLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPMGISKLVSLQLLDISKT 596 (906)
Q Consensus 517 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~ 596 (906)
+...|.+.++.+..+|.. -.++|+.|++++|.++.+|..++ .+|++|++++| .++.+|..+. .+|+.|+|++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECcCC
Confidence 356788888888888852 13589999999999999988654 58999999999 8999997665 47999999999
Q ss_pred cccccChhhhCCCCCcEecccccccccccChhhhcCCCCCceeecccccccCCCCCCCccccccHHhhcCCCCccEEEEE
Q 002569 597 SVVELPEELKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFAIGVRSPYGLSSSWHENVAEELLGLKYLEVLEIT 676 (906)
Q Consensus 597 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 676 (906)
.+..+|..+. .+|+.|++++| .+..+|.. +. ++|+.|++++|.+.. .+..+ .++|+.|+++
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N~Lt~-----------LP~~l--p~sL~~L~Ls 312 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDNSIRT-----------LPAHL--PSGITHLNVQ 312 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCCcccc-----------Ccccc--hhhHHHHHhc
Confidence 9999998775 58999999988 67888875 32 589999999885542 11111 1357778888
Q ss_pred EechhhHHHHhhcccccccceeeEecccCCCcccccccccccCCCcEEEecCCCCCCceeeecccccccCCCcccCCCCC
Q 002569 677 FRSFKAYQTFLSSQKLRSCTQALLLDEFDREESIDVADLADLEQLNTLSFVGCDWPGGLRIDYKDMVQKSRQPYVFRSLE 756 (906)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~ 756 (906)
.|.+..++.. ...+|+.|.+++|.. ..++ ..+ .++|+.|++++|.... ++.. .+++|+
T Consensus 313 ~N~Lt~LP~~-----l~~sL~~L~Ls~N~L-t~LP-~~l--~~sL~~L~Ls~N~L~~-LP~~------------lp~~L~ 370 (754)
T PRK15370 313 SNSLTALPET-----LPPGLKTLEAGENAL-TSLP-ASL--PPELQVLDVSKNQITV-LPET------------LPPTIT 370 (754)
T ss_pred CCccccCCcc-----ccccceeccccCCcc-ccCC-hhh--cCcccEEECCCCCCCc-CChh------------hcCCcC
Confidence 8877655431 224788888887753 3333 222 2678888888886543 2211 135788
Q ss_pred EEEEecCCCCCCchhhhcCCCccEEeeecCc
Q 002569 757 EVTVDSCRNLKHLTFLVFAPNLKSISVRYCN 787 (906)
Q Consensus 757 ~L~l~~c~~l~~l~~l~~l~~L~~L~L~~c~ 787 (906)
.|++++| .+..+|.- ..++|+.|++++|.
T Consensus 371 ~LdLs~N-~Lt~LP~~-l~~sL~~LdLs~N~ 399 (754)
T PRK15370 371 TLDVSRN-ALTNLPEN-LPAALQIMQASRNN 399 (754)
T ss_pred EEECCCC-cCCCCCHh-HHHHHHHHhhccCC
Confidence 8888888 56666541 12467888888763
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.34 E-value=4.8e-13 Score=158.51 Aligned_cols=323 Identities=22% Similarity=0.297 Sum_probs=189.6
Q ss_pred cEEEEcCCCccccCCCcccceeeeEEeccccC--CCCCCC--CCCCCCceEEEeecCC-CccccccccCCCCceeEEEcc
Q 002569 496 GFLVYAGSGLTEAPADVRGWEIVRRLSLMRNS--IDNLPT--VPTCPHLLTLFLNRNP-LRTITGGFFQSMSCLTVLKMS 570 (906)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~--~~~l~~--~~~~~~Lr~L~l~~~~-l~~~~~~~~~~l~~L~~L~Ls 570 (906)
+.++..++.+..++. -...++++.|-+..|. +..++. +..++.||+|++++|. +.++|.. ++++-+||||+|+
T Consensus 526 rr~s~~~~~~~~~~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLS 603 (889)
T ss_pred eEEEEeccchhhccC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-Hhhhhhhhccccc
Confidence 344445555555522 2334479999998886 666664 7889999999999987 7777776 8999999999999
Q ss_pred CcccccccccccccccccceeecccCc-ccccChhhhCCCCCcEecccccccccccChhhhcCCCCCceeecccccccCC
Q 002569 571 DNETLRQLPMGISKLVSLQLLDISKTS-VVELPEELKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFAIGVRSP 649 (906)
Q Consensus 571 ~~~~i~~lp~~i~~L~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~ 649 (906)
++ .+..+|.++++|..|.|||+..+. +..+|.....|++|++|.+.... .......++.+.+|++|....+...
T Consensus 604 ~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~-- 678 (889)
T KOG4658|consen 604 DT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITIS-- 678 (889)
T ss_pred CC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecc--
Confidence 99 999999999999999999999985 44556777779999999987653 1111112444455555544432111
Q ss_pred CCCCCccccccHHhhcCCCCccEEEEEEe-chhhHHHHhhcccccccceeeEecccCCCcccc--ccc--cc-ccCCCcE
Q 002569 650 YGLSSSWHENVAEELLGLKYLEVLEITFR-SFKAYQTFLSSQKLRSCTQALLLDEFDREESID--VAD--LA-DLEQLNT 723 (906)
Q Consensus 650 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~--~~~--l~-~l~~L~~ 723 (906)
.......+..+..|+++..... ................+|+.|.+.+|...+... ... .. .++++..
T Consensus 679 -------s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~ 751 (889)
T KOG4658|consen 679 -------SVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSK 751 (889)
T ss_pred -------hhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHH
Confidence 1122333444444432221110 001111222233345578888888776532211 000 11 1345666
Q ss_pred EEecCCCCCCceeeecccccccCCCcccCCCCCEEEEecCCCCCCch-hhhcCCCccEEeeecCcchHHHhhcCCCCCcC
Q 002569 724 LSFVGCDWPGGLRIDYKDMVQKSRQPYVFRSLEEVTVDSCRNLKHLT-FLVFAPNLKSISVRYCNDMEEIISAGEFDDIP 802 (906)
Q Consensus 724 L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~ 802 (906)
+.+.+|.... .++|. ...++|+.|.+..|..+..+. ....+..+..+.+..+ .+..... .
T Consensus 752 ~~~~~~~~~r--~l~~~---------~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~-~~~~l~~------~- 812 (889)
T KOG4658|consen 752 VSILNCHMLR--DLTWL---------LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN-KLEGLRM------L- 812 (889)
T ss_pred HHhhcccccc--ccchh---------hccCcccEEEEecccccccCCCHHHHhhhcccEEeccc-cccccee------e-
Confidence 6666666555 23333 257899999999998776553 3444444443333222 1111100 0
Q ss_pred cccCcCCCcCCCccEEecCCccccccccCCC----CCCCCccEEeecCC-CCCCCcCCC
Q 002569 803 EMTGIISSPFAKLQRLRLERLRNLKSIYWKP----LPLPRLKELEFRGC-DSLKKLPLD 856 (906)
Q Consensus 803 ~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~~~L~~L~i~~c-~~L~~Lp~~ 856 (906)
...+.||++..+.+.... +..+.... ..+|.+..+.+.+| +.+..+|..
T Consensus 813 ----~~l~~l~~i~~~~l~~~~-l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 813 ----CSLGGLPQLYWLPLSFLK-LEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred ----ecCCCCceeEecccCccc-hhheehhcCcccccCccccccceeccccceeecCCc
Confidence 122334444444443322 33333322 45788889999997 888888864
No 24
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.23 E-value=1.4e-09 Score=121.38 Aligned_cols=293 Identities=16% Similarity=0.110 Sum_probs=171.7
Q ss_pred CCcccchhHHHHHHHHHHhc---CCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHH
Q 002569 158 EPTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIG 234 (906)
Q Consensus 158 ~~~~vgr~~~~~~l~~~L~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~ 234 (906)
++.++||+++++++...+.+ +...+.+.|+|++|+|||++++.+++... .....-.++++++....+...++..++
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~-~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE-EIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH-HhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 35689999999999998844 23556789999999999999999999872 222234577788777778889999999
Q ss_pred HHhCCCCCccccCCHHHHHHHHHHHhc--cCcEEEEEccccchh------hhhhcCCcCC--CCcE--EEEEeccccccc
Q 002569 235 KKIGLYTDSWKDRSLEEKAQDIFKTLS--KKKFVLLLDDLWERV------DLKKVGVPLP--KNSA--VVFTTRFVDVCG 302 (906)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~~~~~~~--~gs~--iivTtR~~~v~~ 302 (906)
.++..........+.++....+.+.+. +++.+||||+++... .+..+..... .+++ +|.++....+..
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhh
Confidence 988652211123356677777777765 356899999997532 2333322111 1333 566666544322
Q ss_pred CCC-------ccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHh----CCChHHHHHHHHHh--h--cC
Q 002569 303 GME-------ARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANEC----GGLPLALITIGRAM--A--YK 367 (906)
Q Consensus 303 ~~~-------~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c----~G~Plai~~~~~~l--~--~~ 367 (906)
... ....+.+++++.++..+++..++...- ....--.+..+.|++.+ |..+.|+..+-.+. + ..
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~-~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGF-YPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhc-ccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 211 134678999999999999998864211 00011133444454444 44666766554322 1 11
Q ss_pred ---CCHHHHHHHHHHHhhhhhccCCCchhhhhhHHhhhcCCCchhhhhhhhhhc-cCCC-CcccChhhHHHH--HHhcCC
Q 002569 368 ---KTPEEWRYAIEVLRRSASEFAGLGKEVYPLLKFSYDCLPSDAIRSCFLYCC-LYPE-DYGIDKRDLIDC--WMCEGF 440 (906)
Q Consensus 368 ---~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~-~fp~-~~~i~~~~li~~--w~aeg~ 440 (906)
-+.++...+.+.... ....-.+..||. +.|..+..++ .... ...+....+... .+++.+
T Consensus 267 ~~~I~~~~v~~a~~~~~~-------------~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~ 332 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSEI-------------VHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL 332 (394)
T ss_pred CCCcCHHHHHHHHHHHHH-------------HHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc
Confidence 145566555554321 123345778997 4444333322 2221 123444444422 222211
Q ss_pred ccccccccchhhHHHHHHHHHhhccccc
Q 002569 441 LEEDKFGTQNRGYYIVGTLVHACLLEEV 468 (906)
Q Consensus 441 i~~~~~~~~~~~~~~~~~L~~~~ll~~~ 468 (906)
-. ..-.......|++.|...+++...
T Consensus 333 ~~--~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 333 GY--EPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CC--CcCcHHHHHHHHHHHHhcCCeEEE
Confidence 10 011234556789999999999864
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.21 E-value=6.4e-13 Score=134.99 Aligned_cols=239 Identities=18% Similarity=0.248 Sum_probs=156.9
Q ss_pred cccCCCCCCCCCCC-CCceEEEeecCCCccccccccCCCCceeEEEccCccccccc-ccccccccccceeeccc-Ccccc
Q 002569 524 MRNSIDNLPTVPTC-PHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQL-PMGISKLVSLQLLDISK-TSVVE 600 (906)
Q Consensus 524 ~~~~~~~l~~~~~~-~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~-~~i~~ 600 (906)
++..+..+|. ++ +.-..+.|..|.|+.+|+..|+.+++||.||||+| .|+.+ |..|..|..|-.|-+.+ |+|+.
T Consensus 54 r~~GL~eVP~--~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 54 RGKGLTEVPA--NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred cCCCcccCcc--cCCCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 3445556662 22 35677899999999999999999999999999999 89887 88999999988777766 89999
Q ss_pred cCh-hhhCCCCCcEecccccccccccChhhhcCCCCCceeecccccccCCCCCCCccccccHHhhcCCCCccEEEEEEec
Q 002569 601 LPE-ELKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFAIGVRSPYGLSSSWHENVAEELLGLKYLEVLEITFRS 679 (906)
Q Consensus 601 lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 679 (906)
+|. .++.|..||.|.+.-| .+..++.+.+..|++|..|.+..|.+.... -..+..+..++++.+..|.
T Consensus 131 l~k~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~----------~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSIC----------KGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhhhc----------cccccchhccchHhhhcCc
Confidence 986 6899999999999887 788889888999999999999876432210 0122333333333333222
Q ss_pred hhh------HHHH--------------------------hhcccccccceee---EecccCCCcccccccccccCCCcEE
Q 002569 680 FKA------YQTF--------------------------LSSQKLRSCTQAL---LLDEFDREESIDVADLADLEQLNTL 724 (906)
Q Consensus 680 ~~~------~~~~--------------------------~~~~~~~~~L~~L---~L~~~~~~~~~~~~~l~~l~~L~~L 724 (906)
+.. .... ....+...+++.+ ..+.|......+...|.++++|++|
T Consensus 200 ~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~l 279 (498)
T KOG4237|consen 200 FICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKL 279 (498)
T ss_pred cccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEe
Confidence 100 0000 0000001111111 1111111122222457889999999
Q ss_pred EecCCCCCCceeeecccccccCCCcccCCCCCEEEEecCCCCCCchh--hhcCCCccEEeeecCc
Q 002569 725 SFVGCDWPGGLRIDYKDMVQKSRQPYVFRSLEEVTVDSCRNLKHLTF--LVFAPNLKSISVRYCN 787 (906)
Q Consensus 725 ~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~--l~~l~~L~~L~L~~c~ 787 (906)
++++|.....- ..|+. ....++.|.|..+ ++.++.. +..+.+|+.|+|.++.
T Consensus 280 nlsnN~i~~i~-~~aFe---------~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 280 NLSNNKITRIE-DGAFE---------GAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred ccCCCccchhh-hhhhc---------chhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCe
Confidence 99999876633 33332 3567788888877 5666553 6677888888888853
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.20 E-value=2.9e-09 Score=112.28 Aligned_cols=177 Identities=14% Similarity=0.156 Sum_probs=112.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKT 259 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 259 (906)
..+++.|+|++|+||||+++.+++... . ... ..+|+. ....+..+++..++..++.... ..+.......+.+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~-~-~~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLD-Q-ERV-VAAKLV-NTRVDAEDLLRMVAADFGLETE---GRDKAALLRELEDF 114 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcC-C-CCe-EEeeee-CCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHH
Confidence 457899999999999999999999872 1 221 223433 3345778899999998887542 22333333333332
Q ss_pred -----hccCcEEEEEccccch--hhhhhcC---CcCCC---CcEEEEEecccccccC--------C--CccceEEeccCC
Q 002569 260 -----LSKKKFVLLLDDLWER--VDLKKVG---VPLPK---NSAVVFTTRFVDVCGG--------M--EARRKFKVECLS 316 (906)
Q Consensus 260 -----l~~kr~LlVlDdv~~~--~~~~~~~---~~~~~---gs~iivTtR~~~v~~~--------~--~~~~~~~l~~L~ 316 (906)
..+++.++|+||++.. ..++.+. ....+ ...|++|.... .... + .....+.+++++
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 2568899999999864 2333322 11111 22445555422 1111 1 113467899999
Q ss_pred hHhHHHHHHHHhccccccCC-CCchHHHHHHHHHhCCChHHHHHHHHHh
Q 002569 317 DEDAWELFREKVGEETIESH-HSIPELAQTVANECGGLPLALITIGRAM 364 (906)
Q Consensus 317 ~~e~~~Lf~~~a~~~~~~~~-~~~~~~~~~i~~~c~G~Plai~~~~~~l 364 (906)
.+|..+++...+........ .--.+..+.|++.|+|.|..|..++..+
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999999887653321111 2236889999999999999999888876
No 27
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.19 E-value=1.3e-09 Score=122.54 Aligned_cols=288 Identities=17% Similarity=0.184 Sum_probs=194.6
Q ss_pred cccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCc-ccHHHHHHHHHHHhC
Q 002569 160 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKD-LQLEKIQETIGKKIG 238 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~l~~~i~~~l~ 238 (906)
..+-|. ++++.|....+.+.+.|..++|.|||||+.+.+... ..-..+.|.+.+.. .++..+...++..++
T Consensus 20 ~~v~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al~ 91 (894)
T COG2909 20 NYVVRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAALQ 91 (894)
T ss_pred cccccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHHH
Confidence 345554 566666665689999999999999999999998743 45568999998764 467888888888776
Q ss_pred CCCCc-----------cccCCHHHHHHHHHHHhc--cCcEEEEEccccc---h---hhhhhcCCcCCCCcEEEEEecccc
Q 002569 239 LYTDS-----------WKDRSLEEKAQDIFKTLS--KKKFVLLLDDLWE---R---VDLKKVGVPLPKNSAVVFTTRFVD 299 (906)
Q Consensus 239 ~~~~~-----------~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~---~---~~~~~~~~~~~~gs~iivTtR~~~ 299 (906)
.-.+. ....+...+...+...+. .++..+||||-.- + ..+..+....|++-..|||||+..
T Consensus 92 ~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 92 QATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred HhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 32211 122344455556655554 3689999999753 2 335555666778999999999765
Q ss_pred cccCC---CccceEEe----ccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHHHHhhcCCCHHH
Q 002569 300 VCGGM---EARRKFKV----ECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIGRAMAYKKTPEE 372 (906)
Q Consensus 300 v~~~~---~~~~~~~l----~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~ 372 (906)
-+..- -....+++ =.|+.+|+-++|....+..- -+.-.+.+.+..+|.+-|+..++=.++.+.+.+.
T Consensus 172 ~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q 245 (894)
T COG2909 172 QLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNNTSAEQ 245 (894)
T ss_pred CCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHH
Confidence 43211 11223333 34899999999988764332 1566889999999999999988877774444433
Q ss_pred HHHHHHHHhhhhhccCCCchhhhhh-HHhhhcCCCchhhhhhhhhhccCCCCcccChhhHHHHHHhcCCccccccccchh
Q 002569 373 WRYAIEVLRRSASEFAGLGKEVYPL-LKFSYDCLPSDAIRSCFLYCCLYPEDYGIDKRDLIDCWMCEGFLEEDKFGTQNR 451 (906)
Q Consensus 373 w~~~~~~l~~~~~~~~~~~~~~~~~-l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~ 451 (906)
--..+. +..+.+..- ..--++.||+ .+|..++-||+++.= -..|+.. ...++.
T Consensus 246 ~~~~Ls----------G~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f----~~eL~~~-----------Ltg~~n 299 (894)
T COG2909 246 SLRGLS----------GAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF----NDELCNA-----------LTGEEN 299 (894)
T ss_pred Hhhhcc----------chHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh----hHHHHHH-----------HhcCCc
Confidence 322221 111112221 2234788999 799999999998631 1222221 234577
Q ss_pred hHHHHHHHHHhhccccc---cCCeEEEeeeeechhhHhH
Q 002569 452 GYYIVGTLVHACLLEEV---EDDQVKMHDVVRDMALWIT 487 (906)
Q Consensus 452 ~~~~~~~L~~~~ll~~~---~~~~~~mHdlv~d~a~~~~ 487 (906)
+...+++|.+++|+-.. ....|+.|+++.||-+.-.
T Consensus 300 g~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 300 GQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRL 338 (894)
T ss_pred HHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhh
Confidence 88899999999997643 5779999999999987544
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.17 E-value=1.5e-08 Score=111.91 Aligned_cols=293 Identities=16% Similarity=0.159 Sum_probs=171.2
Q ss_pred CcccchhHHHHHHHHHHhc---CCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCC---CEEEEEEeCCcccHHHHHHH
Q 002569 159 PTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF---DSVIWVVVSKDLQLEKIQET 232 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~~~~~~~l~~~ 232 (906)
+.++||++++++|...+.. +...+.+.|+|++|+|||++++.+++......... -..+|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 4689999999999999864 33567899999999999999999998762111111 25678888777778889999
Q ss_pred HHHHhC---CCCCccccCCHHHHHHHHHHHhc--cCcEEEEEccccchh-----hhhhcCCc-----CC-CCcEEEEEec
Q 002569 233 IGKKIG---LYTDSWKDRSLEEKAQDIFKTLS--KKKFVLLLDDLWERV-----DLKKVGVP-----LP-KNSAVVFTTR 296 (906)
Q Consensus 233 i~~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~-----~~~~~~~~-----~~-~gs~iivTtR 296 (906)
|+.++. ...+ ....+..+....+.+.+. +++++||||+++... .+..+... .+ ....+|.+|+
T Consensus 95 i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 95 LANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 999883 2211 122345555666666653 467899999997541 12222211 11 1234555554
Q ss_pred ccccccCCC-------ccceEEeccCChHhHHHHHHHHhccc--cccCCCCchHHHHHHHHHhCCChHHHHHHHH-Hh--
Q 002569 297 FVDVCGGME-------ARRKFKVECLSDEDAWELFREKVGEE--TIESHHSIPELAQTVANECGGLPLALITIGR-AM-- 364 (906)
Q Consensus 297 ~~~v~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~a~~~--~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~-~l-- 364 (906)
.......+. ....+.+++++.+|..+++..++... ...-.++..+....++..+.|.|-.+..+.. +.
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 433211111 12468999999999999999987421 1112223334555667777898854433221 11
Q ss_pred h--cC---CCHHHHHHHHHHHhhhhhccCCCchhhhhhHHhhhcCCCchhhhhhhhhhccC--CCCcccChhhHHHHH--
Q 002569 365 A--YK---KTPEEWRYAIEVLRRSASEFAGLGKEVYPLLKFSYDCLPSDAIRSCFLYCCLY--PEDYGIDKRDLIDCW-- 435 (906)
Q Consensus 365 ~--~~---~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~f--p~~~~i~~~~li~~w-- 435 (906)
+ .+ -+.+..+.+.+.+.. ....-++..||. +.|..+..++.. ..+..+....+...+
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~~-------------~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIEK-------------DRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 11 244455554443321 222345678887 555444433311 133445555555533
Q ss_pred HhcCCccccccccchhhHHHHHHHHHhhccccc
Q 002569 436 MCEGFLEEDKFGTQNRGYYIVGTLVHACLLEEV 468 (906)
Q Consensus 436 ~aeg~i~~~~~~~~~~~~~~~~~L~~~~ll~~~ 468 (906)
+++.+ .. ..........+++.|...|++...
T Consensus 320 ~~~~~-~~-~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 320 VCEDI-GV-DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHhc-CC-CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 22211 10 123346677889999999998864
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.11 E-value=4.8e-10 Score=115.66 Aligned_cols=193 Identities=21% Similarity=0.259 Sum_probs=102.0
Q ss_pred ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHH---------
Q 002569 161 VVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQE--------- 231 (906)
Q Consensus 161 ~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~--------- 231 (906)
|+||+.++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+.. + ...+ .++|+.............
T Consensus 1 F~gR~~el~~l~~~l~~~-~~~~~~l~G~rg~GKTsLl~~~~~~~-~-~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG-PSQHILLYGPRGSGKTSLLKEFINEL-K-EKGY-KVVYIDFLEESNESSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---SSEEEEEESTTSSHHHHHHHHHHHC-T---EE-CCCHHCCTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh-cCcEEEEEcCCcCCHHHHHHHHHHHh-h-hcCC-cEEEEecccchhhhHHHHHHHHHHHHH
Confidence 689999999999998876 67899999999999999999999987 1 1112 345554444332221111
Q ss_pred H----HHHHhCCCCC-c---cccCCHHHHHHHHHHHhc--cCcEEEEEccccchh-h----------hhhcCCcC--CCC
Q 002569 232 T----IGKKIGLYTD-S---WKDRSLEEKAQDIFKTLS--KKKFVLLLDDLWERV-D----------LKKVGVPL--PKN 288 (906)
Q Consensus 232 ~----i~~~l~~~~~-~---~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~-~----------~~~~~~~~--~~g 288 (906)
. +...+..... . ............+.+.+. +++++||+||+.... . +..+.... ...
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 1 1111111000 0 011122233333434443 346999999986544 1 11111111 113
Q ss_pred cEEEEEeccccccc--------CCCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHH
Q 002569 289 SAVVFTTRFVDVCG--------GMEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALIT 359 (906)
Q Consensus 289 s~iivTtR~~~v~~--------~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~ 359 (906)
..+|++........ ..+....+.+++|+.+++++++...+... ..- +.-.+..++|+..+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 44555544332321 12334559999999999999999975443 111 12256679999999999998764
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=5.8e-11 Score=112.77 Aligned_cols=109 Identities=29% Similarity=0.408 Sum_probs=21.3
Q ss_pred CCCCCCCCCceEEEeecCCCccccccccC-CCCceeEEEccCcccccccccccccccccceeecccCcccccChhh-hCC
Q 002569 531 LPTVPTCPHLLTLFLNRNPLRTITGGFFQ-SMSCLTVLKMSDNETLRQLPMGISKLVSLQLLDISKTSVVELPEEL-KAL 608 (906)
Q Consensus 531 l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~-~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i-~~L 608 (906)
.+...++.+++.|+|.+|.++.+.. ++ .+.+|+.|+|++| .|+.++ .+..|++|++|++++|+|+.++..+ ..+
T Consensus 12 ~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~l 87 (175)
T PF14580_consen 12 IAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNL 87 (175)
T ss_dssp ------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHHHHHH-
T ss_pred ccccccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccccchHHhC
Confidence 3333344444444444444443321 22 2444445555554 444443 3444445555555555554444333 234
Q ss_pred CCCcEecccccccccccCh-hhhcCCCCCceeecccc
Q 002569 609 VNLKCLNLDWAKELVVVPQ-QLLSNFSRLRVLRMFAI 644 (906)
Q Consensus 609 ~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~ 644 (906)
++|++|++++| .+..+.. ..+..+++|++|++.+|
T Consensus 88 p~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 88 PNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-
T ss_pred CcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCC
Confidence 45555555444 2222221 11334444555555444
No 31
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.10 E-value=1.5e-09 Score=116.64 Aligned_cols=273 Identities=16% Similarity=0.137 Sum_probs=152.4
Q ss_pred cccchhHHHHHHHHHHhc----CCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHH
Q 002569 160 TVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGK 235 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~ 235 (906)
+|+|+++.++++..++.. ......+.++|++|+|||+||+.+++.. . ..+ ..+..+.......+ ...+.
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~-~--~~~---~~~~~~~~~~~~~l-~~~l~ 77 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM-G--VNL---KITSGPALEKPGDL-AAILT 77 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh-C--CCE---EEeccchhcCchhH-HHHHH
Confidence 589999999999888863 2246678899999999999999999987 2 222 12222111112222 22223
Q ss_pred HhCCCC----CccccCCHHHHHHHHHHHhccCcEEEEEccccchhhhhhcCCcCCCCcEEEEEecccccccCC-C-ccce
Q 002569 236 KIGLYT----DSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWERVDLKKVGVPLPKNSAVVFTTRFVDVCGGM-E-ARRK 309 (906)
Q Consensus 236 ~l~~~~----~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~gs~iivTtR~~~v~~~~-~-~~~~ 309 (906)
.++... ++....+ ....+.+...+.+.+..+|+|+..+...+. .+.+..+-|..||+...+...+ . ....
T Consensus 78 ~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~li~~t~~~~~l~~~l~sR~~~~ 153 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVR---LDLPPFTLVGATTRAGMLTSPLRDRFGII 153 (305)
T ss_pred hcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCcccccee---ecCCCeEEEEecCCccccCHHHHhhcceE
Confidence 322111 0001111 122344566666667777777765544333 2233355566677764443221 1 1346
Q ss_pred EEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHHHHhhcCCCHHHHHHHHHHHhhhhhccCC
Q 002569 310 FKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIGRAMAYKKTPEEWRYAIEVLRRSASEFAG 389 (906)
Q Consensus 310 ~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~ 389 (906)
+++++++.++..+++.+.+......- -.+....|++.|+|.|-.+..++..+. ..+. ..+.......
T Consensus 154 ~~l~~l~~~e~~~il~~~~~~~~~~~---~~~al~~ia~~~~G~pR~~~~ll~~~~--------~~a~-~~~~~~it~~- 220 (305)
T TIGR00635 154 LRLEFYTVEELAEIVSRSAGLLNVEI---EPEAALEIARRSRGTPRIANRLLRRVR--------DFAQ-VRGQKIINRD- 220 (305)
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHHhCCCcchHHHHHHHHH--------HHHH-HcCCCCcCHH-
Confidence 79999999999999999887543222 256788999999999977655554321 1100 0000000000
Q ss_pred CchhhhhhHHhhhcCCCchhhhhhhh-hhccCCCCcccChhhHHHHHHhcCCccccccccchhhHHHHH-HHHHhhcccc
Q 002569 390 LGKEVYPLLKFSYDCLPSDAIRSCFL-YCCLYPEDYGIDKRDLIDCWMCEGFLEEDKFGTQNRGYYIVG-TLVHACLLEE 467 (906)
Q Consensus 390 ~~~~~~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~-~L~~~~ll~~ 467 (906)
.-......+...|..++. +.+..+. ....++.+ .+..+.+.... ......++..++ .|++++|++.
T Consensus 221 ~v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l----------g~~~~~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 221 IALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL----------GEDADTIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred HHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh----------CCCcchHHHhhhHHHHHcCCccc
Confidence 001222335567788887 5555554 44555433 33333332211 123456667778 6999999975
Q ss_pred c
Q 002569 468 V 468 (906)
Q Consensus 468 ~ 468 (906)
.
T Consensus 289 ~ 289 (305)
T TIGR00635 289 T 289 (305)
T ss_pred C
Confidence 4
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.08 E-value=3.7e-11 Score=130.50 Aligned_cols=139 Identities=22% Similarity=0.193 Sum_probs=70.9
Q ss_pred CCCCCceEEEeecCCCccc----cccccCCCCceeEEEccCcccccc-------cccccccccccceeecccCccc-ccC
Q 002569 535 PTCPHLLTLFLNRNPLRTI----TGGFFQSMSCLTVLKMSDNETLRQ-------LPMGISKLVSLQLLDISKTSVV-ELP 602 (906)
Q Consensus 535 ~~~~~Lr~L~l~~~~l~~~----~~~~~~~l~~L~~L~Ls~~~~i~~-------lp~~i~~L~~L~~L~L~~~~i~-~lp 602 (906)
..+++|+.|++.+|.++.. ....+...+.|+.|+++++ .+.. ++..+.++++|++|++++|.+. ..+
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 3445577777777765321 1122445566777777666 3331 2344555666777777666655 333
Q ss_pred hhhhCCCC---CcEeccccccccc----ccChhhhcCC-CCCceeecccccccCCCCCCCccccccHHhhcCCCCccEEE
Q 002569 603 EELKALVN---LKCLNLDWAKELV----VVPQQLLSNF-SRLRVLRMFAIGVRSPYGLSSSWHENVAEELLGLKYLEVLE 674 (906)
Q Consensus 603 ~~i~~L~~---L~~L~l~~~~~l~----~lp~~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 674 (906)
..+..+.+ |++|++++|.... .+... +..+ ++|+.|++.+|.+.+. ........+..+++|++|+
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~------~~~~~~~~~~~~~~L~~L~ 171 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGA------SCEALAKALRANRDLKELN 171 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCch------HHHHHHHHHHhCCCcCEEE
Confidence 44444433 6667666663211 11111 3444 5666666666543310 1112334455555666666
Q ss_pred EEEechh
Q 002569 675 ITFRSFK 681 (906)
Q Consensus 675 l~~~~~~ 681 (906)
++.|.+.
T Consensus 172 l~~n~l~ 178 (319)
T cd00116 172 LANNGIG 178 (319)
T ss_pred CcCCCCc
Confidence 6655544
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.08 E-value=3.6e-11 Score=130.64 Aligned_cols=237 Identities=21% Similarity=0.162 Sum_probs=146.1
Q ss_pred ccceeeeEEeccccCCCC-----CC-CCCCCCCceEEEeecCCCccc------cccccCCCCceeEEEccCccccc-ccc
Q 002569 513 RGWEIVRRLSLMRNSIDN-----LP-TVPTCPHLLTLFLNRNPLRTI------TGGFFQSMSCLTVLKMSDNETLR-QLP 579 (906)
Q Consensus 513 ~~~~~lr~L~l~~~~~~~-----l~-~~~~~~~Lr~L~l~~~~l~~~------~~~~~~~l~~L~~L~Ls~~~~i~-~lp 579 (906)
..+..++.+.+.++.+.. ++ .+...+.|+.|+++++.+... ....+..+++|++|++++| .+. ..+
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~ 98 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN-ALGPDGC 98 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC-CCChhHH
Confidence 344568889998888743 33 345678899999998876521 1234677889999999999 554 455
Q ss_pred cccccccc---cceeecccCccc-----ccChhhhCC-CCCcEeccccccccc----ccChhhhcCCCCCceeecccccc
Q 002569 580 MGISKLVS---LQLLDISKTSVV-----ELPEELKAL-VNLKCLNLDWAKELV----VVPQQLLSNFSRLRVLRMFAIGV 646 (906)
Q Consensus 580 ~~i~~L~~---L~~L~L~~~~i~-----~lp~~i~~L-~~L~~L~l~~~~~l~----~lp~~~i~~l~~L~~L~l~~~~~ 646 (906)
..+..+.+ |++|++++|++. .+...+..+ ++|+.|++++|.... .++.. +..+++|++|++.+|++
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCC
Confidence 56666655 999999999876 334566777 899999999995321 23333 66788999999998754
Q ss_pred cCCCCCCCccccccHHhhcCCCCccEEEEEEechhhHH--HHhhcccccccceeeEecccCCCcccccccccccCCCcEE
Q 002569 647 RSPYGLSSSWHENVAEELLGLKYLEVLEITFRSFKAYQ--TFLSSQKLRSCTQALLLDEFDREESIDVADLADLEQLNTL 724 (906)
Q Consensus 647 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L 724 (906)
.+. ........+..+++|+.|+++.|.+.... .+.. .+..+++|++|
T Consensus 178 ~~~------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-------------------------~~~~~~~L~~L 226 (319)
T cd00116 178 GDA------GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE-------------------------TLASLKSLEVL 226 (319)
T ss_pred chH------HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH-------------------------HhcccCCCCEE
Confidence 320 11223445666778888888877764322 1111 23344566666
Q ss_pred EecCCCCCCceeeecccccccCCCcccCCCCCEEEEecCCCCCC-----c-hhhhcCCCccEEeeecCcc
Q 002569 725 SFVGCDWPGGLRIDYKDMVQKSRQPYVFRSLEEVTVDSCRNLKH-----L-TFLVFAPNLKSISVRYCND 788 (906)
Q Consensus 725 ~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~-----l-~~l~~l~~L~~L~L~~c~~ 788 (906)
++++|............ .+. ...+.|++|++.+| .++. + ..+..+++|+++++++|..
T Consensus 227 ~ls~n~l~~~~~~~l~~--~~~---~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 227 NLGDNNLTDAGAAALAS--ALL---SPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred ecCCCcCchHHHHHHHH--HHh---ccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 66666543210000000 000 01356777777776 3331 1 1234456777777777653
No 34
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.06 E-value=1.6e-09 Score=116.90 Aligned_cols=274 Identities=14% Similarity=0.091 Sum_probs=151.3
Q ss_pred CcccchhHHHHHHHHHHhc----CCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHH
Q 002569 159 PTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIG 234 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~ 234 (906)
.+|+|++..++.+..++.. +...+.+.|+|++|+||||+|+.+++.. . ..+ .++..+. ......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~--~~~---~~~~~~~-~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-G--VNI---RITSGPA-LEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-C--CCe---EEEeccc-ccChHHHHHHH
Confidence 4589999999998877753 2346788999999999999999999987 2 222 1222211 11122223333
Q ss_pred HHhCCCC----CccccCCHHHHHHHHHHHhccCcEEEEEccccchhhhhhcCCcCCCCcEEEEEecccccccCCC--ccc
Q 002569 235 KKIGLYT----DSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWERVDLKKVGVPLPKNSAVVFTTRFVDVCGGME--ARR 308 (906)
Q Consensus 235 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~gs~iivTtR~~~v~~~~~--~~~ 308 (906)
..+.... ++....+ ....+.+...+.+.+..+|+|+..+...+. ..++..+-|..|++...+...+. ...
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l~~~~li~at~~~~~l~~~L~sRf~~ 173 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDLPPFTLIGATTRAGLLTSPLRDRFGI 173 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcccccee---ecCCCceEEeecCCcccCCHHHHHhcCe
Confidence 3332111 0000001 112233445555666666776654433221 12233455666766544422211 124
Q ss_pred eEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHHHHhhcCCCHHHHHHHHHHHhhhhhccC
Q 002569 309 KFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIGRAMAYKKTPEEWRYAIEVLRRSASEFA 388 (906)
Q Consensus 309 ~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~ 388 (906)
.+++++++.++..+++.+.+.......+ .+....|++.|+|.|-.+..+...+. .|.... .......
T Consensus 174 ~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~I~~- 240 (328)
T PRK00080 174 VQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGVITK- 240 (328)
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCCCCH-
Confidence 6899999999999999998876543222 57789999999999976555444321 121110 0000000
Q ss_pred CCchhhhhhHHhhhcCCCchhhhhhhh-hhccCCCCcccChhhHHHHHHhcCCccccccccchhhHHHHH-HHHHhhccc
Q 002569 389 GLGKEVYPLLKFSYDCLPSDAIRSCFL-YCCLYPEDYGIDKRDLIDCWMCEGFLEEDKFGTQNRGYYIVG-TLVHACLLE 466 (906)
Q Consensus 389 ~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~-~L~~~~ll~ 466 (906)
..-......+...+..|++ ..+..+. ....|+.+ .+..+.+.... ....+.++..++ .|++.+|++
T Consensus 241 ~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l----------g~~~~~~~~~~e~~Li~~~li~ 308 (328)
T PRK00080 241 EIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL----------GEERDTIEDVYEPYLIQQGFIQ 308 (328)
T ss_pred HHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH----------CCCcchHHHHhhHHHHHcCCcc
Confidence 0001333445566778887 4555553 55666654 34444432221 122345555666 899999987
Q ss_pred cc
Q 002569 467 EV 468 (906)
Q Consensus 467 ~~ 468 (906)
..
T Consensus 309 ~~ 310 (328)
T PRK00080 309 RT 310 (328)
T ss_pred cC
Confidence 65
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=1.4e-10 Score=110.12 Aligned_cols=128 Identities=24% Similarity=0.327 Sum_probs=55.9
Q ss_pred cccceeeeEEeccccCCCCCCCCC-CCCCceEEEeecCCCccccccccCCCCceeEEEccCccccccccccc-ccccccc
Q 002569 512 VRGWEIVRRLSLMRNSIDNLPTVP-TCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPMGI-SKLVSLQ 589 (906)
Q Consensus 512 ~~~~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i-~~L~~L~ 589 (906)
..+..+++.|++.+|.|..+..+. .+.+|++|++++|.++.+.. +..+++|+.|++++| .|+.+++.+ ..+++|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCcCC
Confidence 344557899999999999888776 58899999999999998875 788999999999999 999997666 4689999
Q ss_pred eeecccCcccccC--hhhhCCCCCcEecccccccccccC---hhhhcCCCCCceeeccc
Q 002569 590 LLDISKTSVVELP--EELKALVNLKCLNLDWAKELVVVP---QQLLSNFSRLRVLRMFA 643 (906)
Q Consensus 590 ~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp---~~~i~~l~~L~~L~l~~ 643 (906)
.|++++|+|..+- ..+..+++|++|++.+|+. ...+ ..++..+++|+.|+-..
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEE
Confidence 9999999988663 4678899999999999953 3333 24577899999998664
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=8.4e-12 Score=132.69 Aligned_cols=171 Identities=28% Similarity=0.361 Sum_probs=126.8
Q ss_pred ceeeeEEeccccCCCCCC-CCCCCCCceEEEeecCCCccccccccCCCCceeEEEccCcccccccccccccccccceeec
Q 002569 515 WEIVRRLSLMRNSIDNLP-TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPMGISKLVSLQLLDI 593 (906)
Q Consensus 515 ~~~lr~L~l~~~~~~~l~-~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L 593 (906)
+......+++.|.+..+| ....|-.|..+.+..|.+..+|.. ++++..|.+|||+.| .+..+|..++.|+ |+.|-+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEE
Confidence 344556677777777777 556677788888888888777776 678888888888888 7888888888776 888888
Q ss_pred ccCcccccChhhhCCCCCcEecccccccccccChhhhcCCCCCceeecccccccCCCCCCCccccccHHhhcCCCCccEE
Q 002569 594 SKTSVVELPEELKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFAIGVRSPYGLSSSWHENVAEELLGLKYLEVL 673 (906)
Q Consensus 594 ~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 673 (906)
++|+++.+|..++.+..|.+||.+.| .+..+|.. ++.+.+|+.|.+..|++. ..+.++..|+ |..|
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l~-----------~lp~El~~Lp-Li~l 216 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHLE-----------DLPEELCSLP-LIRL 216 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhhh-----------hCCHHHhCCc-eeee
Confidence 88888888888888888888888887 56777776 778888888888776433 3677777665 7778
Q ss_pred EEEEechhhHHHHhhcccccccceeeEecccC
Q 002569 674 EITFRSFKAYQTFLSSQKLRSCTQALLLDEFD 705 (906)
Q Consensus 674 ~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 705 (906)
|+++|++..++.-+ ..++.|+.|-|.+|+
T Consensus 217 DfScNkis~iPv~f---r~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 217 DFSCNKISYLPVDF---RKMRHLQVLQLENNP 245 (722)
T ss_pred ecccCceeecchhh---hhhhhheeeeeccCC
Confidence 88888777655422 223466777776665
No 37
>PF05729 NACHT: NACHT domain
Probab=98.93 E-value=7.9e-09 Score=100.13 Aligned_cols=138 Identities=19% Similarity=0.277 Sum_probs=88.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcccCCCC----CCEEEEEEeCCcccHH---HHHHHHHHHhCCCCCccccCCHHHHHH
Q 002569 182 GIIGLYGMGGVGKTTLLTQINNKFVDNPTD----FDSVIWVVVSKDLQLE---KIQETIGKKIGLYTDSWKDRSLEEKAQ 254 (906)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~---~l~~~i~~~l~~~~~~~~~~~~~~~~~ 254 (906)
+++.|+|.+|+||||+++.++..... ... +...+|+..+...... .+...|..+..... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE-EEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh-cCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---
Confidence 58999999999999999999988732 222 4567777766544332 34444444332211 11111
Q ss_pred HHHHH-hccCcEEEEEccccchhh-------------hhhcCCc-CCCCcEEEEEeccccc---ccCCCccceEEeccCC
Q 002569 255 DIFKT-LSKKKFVLLLDDLWERVD-------------LKKVGVP-LPKNSAVVFTTRFVDV---CGGMEARRKFKVECLS 316 (906)
Q Consensus 255 ~l~~~-l~~kr~LlVlDdv~~~~~-------------~~~~~~~-~~~gs~iivTtR~~~v---~~~~~~~~~~~l~~L~ 316 (906)
.+... -..+++++|+|++++... +..+... .+.+.++|||+|.... .........+++.+|+
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 12222 246899999999965321 1222222 3448999999998766 3334445689999999
Q ss_pred hHhHHHHHHHHh
Q 002569 317 DEDAWELFREKV 328 (906)
Q Consensus 317 ~~e~~~Lf~~~a 328 (906)
+++..+++.++.
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.93 E-value=7.2e-11 Score=125.74 Aligned_cols=136 Identities=24% Similarity=0.375 Sum_probs=80.0
Q ss_pred CccccCCCcccceeeeEEeccccCCCCCCCCCCCCCceEEEeecCCCccccccccCCCCceeEEEccCcccccccccccc
Q 002569 504 GLTEAPADVRGWEIVRRLSLMRNSIDNLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPMGIS 583 (906)
Q Consensus 504 ~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~ 583 (906)
.+..+|..+..+..+..++++.|.+..+|.-...--|++|.+++|+++.+|+. ++...+|..||.+.| .+..+|..++
T Consensus 109 ~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~n-ei~slpsql~ 186 (722)
T KOG0532|consen 109 CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKN-EIQSLPSQLG 186 (722)
T ss_pred cceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhh-hhhhchHHhh
Confidence 34445555555566666666666666655322222366666666666666655 345666666666666 6666666666
Q ss_pred cccccceeecccCcccccChhhhCCCCCcEecccccccccccChhhhcCCCCCceeecccc
Q 002569 584 KLVSLQLLDISKTSVVELPEELKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFAI 644 (906)
Q Consensus 584 ~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 644 (906)
.|..|+.|+++.|++..+|..++.| .|..||+++| ++..+|-. |.+|..|++|-+.+|
T Consensus 187 ~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScN-kis~iPv~-fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCN-KISYLPVD-FRKMRHLQVLQLENN 244 (722)
T ss_pred hHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccC-ceeecchh-hhhhhhheeeeeccC
Confidence 6666666666666666666666533 3566666655 55666655 566666666666655
No 39
>PRK06893 DNA replication initiation factor; Validated
Probab=98.86 E-value=2.6e-08 Score=101.25 Aligned_cols=150 Identities=15% Similarity=0.224 Sum_probs=94.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKT 259 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 259 (906)
..+.+.++|++|+|||+|++++++... .....+.|+.+.... .... .+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~~---~~~~-----------------------~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKSQ---YFSP-----------------------AVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHhh---hhhH-----------------------HHHhh
Confidence 456789999999999999999999872 223355677653210 0000 11111
Q ss_pred hccCcEEEEEccccch---hhhhh-cCC---cC-CCCcEEEEEeccc----------ccccCCCccceEEeccCChHhHH
Q 002569 260 LSKKKFVLLLDDLWER---VDLKK-VGV---PL-PKNSAVVFTTRFV----------DVCGGMEARRKFKVECLSDEDAW 321 (906)
Q Consensus 260 l~~kr~LlVlDdv~~~---~~~~~-~~~---~~-~~gs~iivTtR~~----------~v~~~~~~~~~~~l~~L~~~e~~ 321 (906)
+. +.-+|||||+|.. ..|+. +.. .. ..|+.+||+|.+. .+.+.+.....+++++++.++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 21 2348999999863 33432 111 11 1266665544432 34444455678999999999999
Q ss_pred HHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHHH
Q 002569 322 ELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIGR 362 (906)
Q Consensus 322 ~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~ 362 (906)
+++.+.+.......+ .+...-|++.+.|..-++..+-.
T Consensus 168 ~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 168 IVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 999998875443333 67788889998887766654443
No 40
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.84 E-value=2.7e-08 Score=119.11 Aligned_cols=285 Identities=14% Similarity=0.186 Sum_probs=165.8
Q ss_pred ccchhHHHHHHHHHHhc--CCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcc---cHHHHHHHHHH
Q 002569 161 VVGLQSQLEQVWRCLVQ--EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDL---QLEKIQETIGK 235 (906)
Q Consensus 161 ~vgr~~~~~~l~~~L~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~---~~~~l~~~i~~ 235 (906)
++||+.+++.|...+.. .+...++.|.|..|||||+++++|.....+.+..|-...+-....+. .....+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 69999999999998865 34677999999999999999999999884332222211111111111 12334444444
Q ss_pred Hh-------------------CCCCCc--------------------cccCCHHH-----HHHHHHHHh-ccCcEEEEEc
Q 002569 236 KI-------------------GLYTDS--------------------WKDRSLEE-----KAQDIFKTL-SKKKFVLLLD 270 (906)
Q Consensus 236 ~l-------------------~~~~~~--------------------~~~~~~~~-----~~~~l~~~l-~~kr~LlVlD 270 (906)
++ +..... ..+..... ....+..+. +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 33 111000 00001111 112222333 3469999999
Q ss_pred cc-cch-hhhhh---cCCcCC--C--CcEEEEEeccccc----ccCCCccceEEeccCChHhHHHHHHHHhccccccCCC
Q 002569 271 DL-WER-VDLKK---VGVPLP--K--NSAVVFTTRFVDV----CGGMEARRKFKVECLSDEDAWELFREKVGEETIESHH 337 (906)
Q Consensus 271 dv-~~~-~~~~~---~~~~~~--~--gs~iivTtR~~~v----~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~ 337 (906)
|+ |-+ ..+.- +....+ . ...|..+...... .........+.|.||+..+...+.....+... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~----~ 237 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK----L 237 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----c
Confidence 99 533 22211 111110 0 1223322221111 22223457899999999999999999987643 2
Q ss_pred CchHHHHHHHHHhCCChHHHHHHHHHhhcC------CCHHHHHHHHHHHhhhhhccCCCchhhhhhHHhhhcCCCchhhh
Q 002569 338 SIPELAQTVANECGGLPLALITIGRAMAYK------KTPEEWRYAIEVLRRSASEFAGLGKEVYPLLKFSYDCLPSDAIR 411 (906)
Q Consensus 338 ~~~~~~~~i~~~c~G~Plai~~~~~~l~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k 411 (906)
...+....|+++.+|+|+.+..+-..+..+ .+...|+.-...+... ... +.+...+..-.+.||. ..+
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~----~~~-~~vv~~l~~rl~kL~~-~t~ 311 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL----ATT-DAVVEFLAARLQKLPG-TTR 311 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc----hhh-HHHHHHHHHHHhcCCH-HHH
Confidence 237889999999999999999998888763 3555665433222211 111 2355567888999998 799
Q ss_pred hhhhhhccCCCCcccChhhHHHHHHhcCCccccccccchhhHHHHHHHHHhhccc
Q 002569 412 SCFLYCCLYPEDYGIDKRDLIDCWMCEGFLEEDKFGTQNRGYYIVGTLVHACLLE 466 (906)
Q Consensus 412 ~cfl~~~~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~L~~~~ll~ 466 (906)
..+-..+++...|. ...|...|- .....++...++.|....++-
T Consensus 312 ~Vl~~AA~iG~~F~--l~~La~l~~---------~~~~~~a~~l~~al~e~lI~~ 355 (849)
T COG3899 312 EVLKAAACIGNRFD--LDTLAALAE---------DSPALEAAALLDALQEGLILP 355 (849)
T ss_pred HHHHHHHHhCccCC--HHHHHHHHh---------hchHHHHHHHHHHhHhhceec
Confidence 99999999875554 444444332 122344555555555554443
No 41
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.73 E-value=1.1e-06 Score=91.27 Aligned_cols=156 Identities=19% Similarity=0.189 Sum_probs=98.9
Q ss_pred HhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHH
Q 002569 175 LVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQ 254 (906)
Q Consensus 175 L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~ 254 (906)
+..+ .+.-...||++|+||||||+.+.... ...| ..++...+-.+-++++++
T Consensus 43 v~~~-~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f-----~~~sAv~~gvkdlr~i~e------------------- 94 (436)
T COG2256 43 VEAG-HLHSMILWGPPGTGKTTLARLIAGTT---NAAF-----EALSAVTSGVKDLREIIE------------------- 94 (436)
T ss_pred HhcC-CCceeEEECCCCCCHHHHHHHHHHhh---CCce-----EEeccccccHHHHHHHHH-------------------
Confidence 3344 78888999999999999999999876 3444 333333221222222222
Q ss_pred HHH-HHhccCcEEEEEccccc--hhhhhhcCCcCCCCcEEEE--Eeccccc---ccCCCccceEEeccCChHhHHHHHHH
Q 002569 255 DIF-KTLSKKKFVLLLDDLWE--RVDLKKVGVPLPKNSAVVF--TTRFVDV---CGGMEARRKFKVECLSDEDAWELFRE 326 (906)
Q Consensus 255 ~l~-~~l~~kr~LlVlDdv~~--~~~~~~~~~~~~~gs~iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~e~~~Lf~~ 326 (906)
.-+ ....+++++|++|.|.. ..+-+.+.....+|.-|+| ||.++.- ....+...++.+++|+.+|..+++.+
T Consensus 95 ~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 95 EARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred HHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHH
Confidence 221 22347899999999964 4455555555555888887 5554432 12234567899999999999999999
Q ss_pred Hhcccc--cc-CCCCc-hHHHHHHHHHhCCChHHHH
Q 002569 327 KVGEET--IE-SHHSI-PELAQTVANECGGLPLALI 358 (906)
Q Consensus 327 ~a~~~~--~~-~~~~~-~~~~~~i~~~c~G~Plai~ 358 (906)
.+-... .. ....+ ++....+++.++|.--++-
T Consensus 175 a~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL 210 (436)
T COG2256 175 ALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRAL 210 (436)
T ss_pred HHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHH
Confidence 443221 01 11122 4577888999999865543
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2e-09 Score=111.62 Aligned_cols=210 Identities=15% Similarity=0.116 Sum_probs=137.5
Q ss_pred ccceeeeEEeccccCCCCCC---CCCCCCCceEEEeecCCCcccc--ccccCCCCceeEEEccCcccccccccc--cccc
Q 002569 513 RGWEIVRRLSLMRNSIDNLP---TVPTCPHLLTLFLNRNPLRTIT--GGFFQSMSCLTVLKMSDNETLRQLPMG--ISKL 585 (906)
Q Consensus 513 ~~~~~lr~L~l~~~~~~~l~---~~~~~~~Lr~L~l~~~~l~~~~--~~~~~~l~~L~~L~Ls~~~~i~~lp~~--i~~L 585 (906)
.+++++|.+++.+..+...+ ....|++++.|+|++|-+.... ..+...+++|+.|+|+.| .+....++ -..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhh
Confidence 34678888888887776555 4678999999999998754432 245678999999999998 55443222 2357
Q ss_pred cccceeecccCccc--ccChhhhCCCCCcEecccccccccccChhhhcCCCCCceeecccccccCCCCCCCccccccHHh
Q 002569 586 VSLQLLDISKTSVV--ELPEELKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFAIGVRSPYGLSSSWHENVAEE 663 (906)
Q Consensus 586 ~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 663 (906)
.+|+.|.|+.|+++ .+-..+..+++|+.|++..|..+..-... ..-+..|+.|++++|.+.+ ......
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~---------~~~~~~ 266 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLID---------FDQGYK 266 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccc---------cccccc
Confidence 89999999999887 44455677889999999888422111111 2346678899999875443 112234
Q ss_pred hcCCCCccEEEEEEechhhHHHHh----hcccccccceeeEecccCCCcccccccccccCCCcEEEecCCCCCC
Q 002569 664 LLGLKYLEVLEITFRSFKAYQTFL----SSQKLRSCTQALLLDEFDREESIDVADLADLEQLNTLSFVGCDWPG 733 (906)
Q Consensus 664 l~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 733 (906)
++.++.|+.|.++.+.+..+.... .......+|+.|.+..|+....-.+..+..+++|+.|.+..++...
T Consensus 267 ~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 567788888888877766543211 1123345677777777765333333445556677777776665544
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.7e-09 Score=110.61 Aligned_cols=109 Identities=20% Similarity=0.147 Sum_probs=67.5
Q ss_pred CCCCCceEEEeecCCCccccc-cccCCCCceeEEEccCcccccc---cccccccccccceeecccCcccccCh--hhhCC
Q 002569 535 PTCPHLLTLFLNRNPLRTITG-GFFQSMSCLTVLKMSDNETLRQ---LPMGISKLVSLQLLDISKTSVVELPE--ELKAL 608 (906)
Q Consensus 535 ~~~~~Lr~L~l~~~~l~~~~~-~~~~~l~~L~~L~Ls~~~~i~~---lp~~i~~L~~L~~L~L~~~~i~~lp~--~i~~L 608 (906)
.++++||...|.++.+...+. .....|++++.||||+| -+.. +-+-+..|++|+.|+|+.|++...-+ .-..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 567788888888887654443 34677888888888887 4443 23345667888888888887664422 22356
Q ss_pred CCCcEecccccccccccChhhhcCCCCCceeecccc
Q 002569 609 VNLKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFAI 644 (906)
Q Consensus 609 ~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 644 (906)
++|+.|.++.|.....--..+...+++|+.|++.+|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 677777777773211100112345667777777665
No 44
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.70 E-value=9.7e-07 Score=98.33 Aligned_cols=176 Identities=17% Similarity=0.166 Sum_probs=106.4
Q ss_pred cccchhHHHHH---HHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHH
Q 002569 160 TVVGLQSQLEQ---VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKK 236 (906)
Q Consensus 160 ~~vgr~~~~~~---l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~ 236 (906)
+++|.+..+.. +..++..+ ..+.+.++|++|+||||+|+.+++.. ...| +.++....-..-.+.++
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~-~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~ii-- 81 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAG-RLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREVI-- 81 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcC-CCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHHH--
Confidence 58898877655 77777665 67788899999999999999999876 2232 22222111111111121
Q ss_pred hCCCCCccccCCHHHHHHHHHHH-hccCcEEEEEccccch--hhhhhcCCcCCCCcEEEEE--ecccc--cc-cCCCccc
Q 002569 237 IGLYTDSWKDRSLEEKAQDIFKT-LSKKKFVLLLDDLWER--VDLKKVGVPLPKNSAVVFT--TRFVD--VC-GGMEARR 308 (906)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~--~~~~~~~~~~~~gs~iivT--tR~~~--v~-~~~~~~~ 308 (906)
...... ..+++.+|++|+++.. .....+...+..+..++|. |.+.. +. ...+...
T Consensus 82 -----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~~ 144 (413)
T PRK13342 82 -----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQ 144 (413)
T ss_pred -----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhccce
Confidence 111111 2457889999999853 3333443334446666553 33321 11 1112336
Q ss_pred eEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHHHH
Q 002569 309 KFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIGRA 363 (906)
Q Consensus 309 ~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~ 363 (906)
.+.+.+++.++.+.++.+.+.........--.+....|++.|+|.+..+..+...
T Consensus 145 ~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 145 VFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred eeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7899999999999999887643210000222567888999999999776554443
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.70 E-value=4.1e-09 Score=103.56 Aligned_cols=111 Identities=18% Similarity=0.208 Sum_probs=75.0
Q ss_pred CCCCceeEEEccCcccccccccccccccccceeecccCcccccChhhhCCCCCcEecccccccccccChhhhcCCCCCce
Q 002569 559 QSMSCLTVLKMSDNETLRQLPMGISKLVSLQLLDISKTSVVELPEELKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRV 638 (906)
Q Consensus 559 ~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~ 638 (906)
.-.+.|..||||+| .|+.+.++..-++.++.|++|+|+|..+- .+..|++|++||+++| .+..+.. +-.+|.|.++
T Consensus 281 dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N-~Ls~~~G-wh~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGN-LLAECVG-WHLKLGNIKT 356 (490)
T ss_pred chHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccc-hhHhhhh-hHhhhcCEee
Confidence 34567888888888 88888888888888888888888887774 3778888888888887 4555443 2346777888
Q ss_pred eecccccccCCCCCCCccccccHHhhcCCCCccEEEEEEechhhHHH
Q 002569 639 LRMFAIGVRSPYGLSSSWHENVAEELLGLKYLEVLEITFRSFKAYQT 685 (906)
Q Consensus 639 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 685 (906)
|.+.+|.+ ..+.+++.|-.|..|++..|++..++.
T Consensus 357 L~La~N~i------------E~LSGL~KLYSLvnLDl~~N~Ie~lde 391 (490)
T KOG1259|consen 357 LKLAQNKI------------ETLSGLRKLYSLVNLDLSSNQIEELDE 391 (490)
T ss_pred eehhhhhH------------hhhhhhHhhhhheeccccccchhhHHH
Confidence 88876522 133344455555566666666554443
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.68 E-value=1.4e-08 Score=113.62 Aligned_cols=107 Identities=27% Similarity=0.362 Sum_probs=61.8
Q ss_pred CCCCCCceEEEeecCCCccccccccCCCC-ceeEEEccCcccccccccccccccccceeecccCcccccChhhhCCCCCc
Q 002569 534 VPTCPHLLTLFLNRNPLRTITGGFFQSMS-CLTVLKMSDNETLRQLPMGISKLVSLQLLDISKTSVVELPEELKALVNLK 612 (906)
Q Consensus 534 ~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~-~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~ 612 (906)
...++.+..|.+.+|.++.+++. ...+. +|+.|++++| .+..+|..++.+++|+.|++++|++..+|...+.+++|+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 34445566666666666555553 23332 5666666666 666665556666666666666666666665555666666
Q ss_pred EecccccccccccChhhhcCCCCCceeecccc
Q 002569 613 CLNLDWAKELVVVPQQLLSNFSRLRVLRMFAI 644 (906)
Q Consensus 613 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 644 (906)
.|++++| .+..+|.. +..+..|++|.+.+|
T Consensus 190 ~L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 190 NLDLSGN-KISDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred heeccCC-ccccCchh-hhhhhhhhhhhhcCC
Confidence 6666666 45556653 334444666666554
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.67 E-value=1.7e-09 Score=111.44 Aligned_cols=106 Identities=18% Similarity=0.142 Sum_probs=60.0
Q ss_pred CceEEEeecCCCcc--ccccccCCCCceeEEEccCccccccc--ccccccccccceeecccC-cccc--cChhhhCCCCC
Q 002569 539 HLLTLFLNRNPLRT--ITGGFFQSMSCLTVLKMSDNETLRQL--PMGISKLVSLQLLDISKT-SVVE--LPEELKALVNL 611 (906)
Q Consensus 539 ~Lr~L~l~~~~l~~--~~~~~~~~l~~L~~L~Ls~~~~i~~l--p~~i~~L~~L~~L~L~~~-~i~~--lp~~i~~L~~L 611 (906)
.|+.|.+.++.-.. -...+..+++++.+|.+.+|..+++- -+.-..+++|++|++..| .|+. +-.-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46777777775111 11234567888888888888666542 222345677888888775 4542 22234567778
Q ss_pred cEecccccccccccC-hhhhcCCCCCceeecccc
Q 002569 612 KCLNLDWAKELVVVP-QQLLSNFSRLRVLRMFAI 644 (906)
Q Consensus 612 ~~L~l~~~~~l~~lp-~~~i~~l~~L~~L~l~~~ 644 (906)
.+|++++|..+..-. +....++.+|+.+...||
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence 888888875444310 011344555555544443
No 48
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.64 E-value=1.6e-06 Score=98.93 Aligned_cols=171 Identities=12% Similarity=0.112 Sum_probs=108.4
Q ss_pred CCcccchhHHHHHHHHHHhc----CCCCeEEEEEcCCCCcHHHHHHHHHHhcccC--CCCC--CEEEEEEeCCcccHHHH
Q 002569 158 EPTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDN--PTDF--DSVIWVVVSKDLQLEKI 229 (906)
Q Consensus 158 ~~~~vgr~~~~~~l~~~L~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f--~~~~wv~~s~~~~~~~l 229 (906)
++.+.|||+++++|...|.. .....++.|+|++|.|||+.++.|.+.+... .... -.+++|.+..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 34689999999999988864 2234578899999999999999998876311 1111 24678888777788889
Q ss_pred HHHHHHHhCCCCCccccCCHHHHHHHHHHHhc---cCcEEEEEccccchh-----hhhhcCC-cCCCCcEEEE--Eeccc
Q 002569 230 QETIGKKIGLYTDSWKDRSLEEKAQDIFKTLS---KKKFVLLLDDLWERV-----DLKKVGV-PLPKNSAVVF--TTRFV 298 (906)
Q Consensus 230 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~kr~LlVlDdv~~~~-----~~~~~~~-~~~~gs~iiv--TtR~~ 298 (906)
+..|..++....+ .......+....+...+. +...+||||+|+... .+-.+.. +...+++|++ ++...
T Consensus 834 YqvI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 834 YQVLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 9999988843321 122233445555555542 224599999996431 1222211 1122555554 33322
Q ss_pred cc--------ccCCCccceEEeccCChHhHHHHHHHHhcc
Q 002569 299 DV--------CGGMEARRKFKVECLSDEDAWELFREKVGE 330 (906)
Q Consensus 299 ~v--------~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~ 330 (906)
.. ...++ ...+...|++.+|..+++..++..
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHh
Confidence 21 12222 234677999999999999999864
No 49
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.64 E-value=2.3e-07 Score=94.88 Aligned_cols=165 Identities=15% Similarity=0.143 Sum_probs=101.5
Q ss_pred hhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCc
Q 002569 164 LQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDS 243 (906)
Q Consensus 164 r~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~ 243 (906)
.+..++.+..++... ..+.+.|+|+.|+|||++|+.+++... ......+|++++.-.. ..
T Consensus 22 ~~~~~~~l~~~~~~~-~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~------~~---------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK-GDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQ------AD---------- 81 (226)
T ss_pred cHHHHHHHHHHHhcC-CCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHH------hH----------
Confidence 345667777766544 578899999999999999999998862 2334556666543211 00
Q ss_pred cccCCHHHHHHHHHHHhccCcEEEEEccccchh---hh-hhcCCcC----CCCcEEEEEeccccc---------ccCCCc
Q 002569 244 WKDRSLEEKAQDIFKTLSKKKFVLLLDDLWERV---DL-KKVGVPL----PKNSAVVFTTRFVDV---------CGGMEA 306 (906)
Q Consensus 244 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~-~~~~~~~----~~gs~iivTtR~~~v---------~~~~~~ 306 (906)
..+...+.+ .-+|||||++... .| +.+...+ ..+.++|+||+.... ...+..
T Consensus 82 ----------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~ 150 (226)
T TIGR03420 82 ----------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAW 150 (226)
T ss_pred ----------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhc
Confidence 011111222 2389999997532 22 2222111 125688888875321 111222
Q ss_pred cceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHHH
Q 002569 307 RRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIGR 362 (906)
Q Consensus 307 ~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~ 362 (906)
...+++.+++.++...++.+.+.......+ .+..+.+++.+.|+|..+..+..
T Consensus 151 ~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 151 GLVFQLPPLSDEEKIAALQSRAARRGLQLP---DEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred CeeEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 357899999999999999876543221122 56778888889999987765543
No 50
>PRK04195 replication factor C large subunit; Provisional
Probab=98.63 E-value=1.5e-06 Score=98.72 Aligned_cols=181 Identities=20% Similarity=0.237 Sum_probs=112.3
Q ss_pred CcccchhHHHHHHHHHHhc---CCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHH
Q 002569 159 PTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGK 235 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~ 235 (906)
.+++|.+..++++.+|+.. +...+.+.|+|++|+||||+|+.+++.. .|+ ++-++.+...... ....++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~~~-~i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRTAD-VIERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEcccccccHH-HHHHHHH
Confidence 4589999999999999864 2237899999999999999999999987 233 3334444432222 2223322
Q ss_pred HhCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccchh------hhhhcCCcCCC-CcEEEEEeccccccc--C-CC
Q 002569 236 KIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWERV------DLKKVGVPLPK-NSAVVFTTRFVDVCG--G-ME 305 (906)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------~~~~~~~~~~~-gs~iivTtR~~~v~~--~-~~ 305 (906)
...... .....++.+||||+++... .+..+...+.. +..||+|+.+..-.. . -.
T Consensus 87 ~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lrs 150 (482)
T PRK04195 87 EAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELRN 150 (482)
T ss_pred HhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHhc
Confidence 221100 0011367899999997532 12333222212 455666665432111 1 12
Q ss_pred ccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHHHHhh
Q 002569 306 ARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIGRAMA 365 (906)
Q Consensus 306 ~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~ 365 (906)
....+.+.+++.++....+.+.+.......+ .+....|++.++|..-.+......+.
T Consensus 151 r~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 151 ACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred cceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 3467899999999999998887754442222 67889999999998766654444443
No 51
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=1.8e-06 Score=98.16 Aligned_cols=192 Identities=17% Similarity=0.156 Sum_probs=111.0
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG 238 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 238 (906)
.+++|.+..++.|.+++..+.-.+.+.++|..|+||||+|+.+.+.+. ....+. +..+..-..-+.|...-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn-Ce~~~~-------~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN-CETGVT-------SQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CccCCC-------CCCCcccHHHHHHhcCCC
Confidence 358999999999999998763356778999999999999999988772 111110 011111111111111000
Q ss_pred CC---CCccccCCHHHHHHHHHHH----hccCcEEEEEccccch--hhhhhcCCc---CCCCcEEEEEecccc-ccc-CC
Q 002569 239 LY---TDSWKDRSLEEKAQDIFKT----LSKKKFVLLLDDLWER--VDLKKVGVP---LPKNSAVVFTTRFVD-VCG-GM 304 (906)
Q Consensus 239 ~~---~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~--~~~~~~~~~---~~~gs~iivTtR~~~-v~~-~~ 304 (906)
.. -+.......+++.+.+... ..++.-++|||++... ..+..+... .+...++|+||++.. +.. ..
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIr 167 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVL 167 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhh
Confidence 00 0000111222222222211 1245568999999754 233333222 233778777776543 221 12
Q ss_pred CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChH-HHHHHH
Q 002569 305 EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPL-ALITIG 361 (906)
Q Consensus 305 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~~ 361 (906)
+....|++++++.++..+.+.+.+..+....+ .+....|++.++|..- |+..+-
T Consensus 168 SRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id---~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 168 SRCLQFNLKQMPAGHIVSHLERILGEERIAFE---PQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred hheEEEecCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 33468999999999999999888765442222 6778899999999764 554433
No 52
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.61 E-value=7.4e-09 Score=101.80 Aligned_cols=130 Identities=24% Similarity=0.359 Sum_probs=92.3
Q ss_pred ccceeeeEEeccccCCCCCCC-CCCCCCceEEEeecCCCccccccccCCCCceeEEEccCccccccccccccccccccee
Q 002569 513 RGWEIVRRLSLMRNSIDNLPT-VPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPMGISKLVSLQLL 591 (906)
Q Consensus 513 ~~~~~lr~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L 591 (906)
..|..++.+++++|.|..+.. ..-.|++|.|++++|.+..+.. +..+++|..||||+| .++++-..-.+|-|.++|
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEeee
Confidence 346677788888887777663 3446778888888888766654 667788888888888 677665445567777888
Q ss_pred ecccCcccccChhhhCCCCCcEecccccccccccCh-hhhcCCCCCceeeccccccc
Q 002569 592 DISKTSVVELPEELKALVNLKCLNLDWAKELVVVPQ-QLLSNFSRLRVLRMFAIGVR 647 (906)
Q Consensus 592 ~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~ 647 (906)
.|++|.|..+ ..+++|.+|.+||+++| .+..+.. ..|++|+.|++|.+.+|.+.
T Consensus 358 ~La~N~iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 358 KLAQNKIETL-SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ehhhhhHhhh-hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCcc
Confidence 8888877777 46778888888888877 4555532 12777888888887776443
No 53
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.61 E-value=3e-08 Score=110.96 Aligned_cols=157 Identities=25% Similarity=0.355 Sum_probs=125.7
Q ss_pred cccceeeeEEeccccCCCCCCCCCCCC--CceEEEeecCCCccccccccCCCCceeEEEccCcccccccccccccccccc
Q 002569 512 VRGWEIVRRLSLMRNSIDNLPTVPTCP--HLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPMGISKLVSLQ 589 (906)
Q Consensus 512 ~~~~~~lr~L~l~~~~~~~l~~~~~~~--~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~ 589 (906)
+...+.+..+++.++.+..++...... +|+.|++++|.+..++.. +..++.|+.|++++| .+.++|...+.+.+|+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence 344567999999999999999766654 899999999999888643 789999999999999 9999998888999999
Q ss_pred eeecccCcccccChhhhCCCCCcEecccccccccccChhhhcCCCCCceeecccccccCCCCCCCccccccHHhhcCCCC
Q 002569 590 LLDISKTSVVELPEELKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFAIGVRSPYGLSSSWHENVAEELLGLKY 669 (906)
Q Consensus 590 ~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 669 (906)
.|++++|++..+|..+..+..|++|.+++|. ...++.. +.++.++..|.+.++... ..+..++.+++
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~-----------~~~~~~~~l~~ 256 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE-----------DLPESIGNLSN 256 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee-----------eccchhccccc
Confidence 9999999999999988888889999999984 3444543 788888888887665221 12455666777
Q ss_pred ccEEEEEEechhhH
Q 002569 670 LEVLEITFRSFKAY 683 (906)
Q Consensus 670 L~~L~l~~~~~~~~ 683 (906)
|+.|+++.|.+..+
T Consensus 257 l~~L~~s~n~i~~i 270 (394)
T COG4886 257 LETLDLSNNQISSI 270 (394)
T ss_pred cceecccccccccc
Confidence 77777776665543
No 54
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.58 E-value=5.4e-08 Score=75.83 Aligned_cols=60 Identities=33% Similarity=0.526 Sum_probs=40.5
Q ss_pred CCceEEEeecCCCccccccccCCCCceeEEEccCcccccccc-cccccccccceeecccCcc
Q 002569 538 PHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLP-MGISKLVSLQLLDISKTSV 598 (906)
Q Consensus 538 ~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~i 598 (906)
|+|++|++++|.++.++++.|.++++|++|++++| .++.+| ..+.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45667777777777777666777777777777766 666664 3566677777777766653
No 55
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=2.9e-06 Score=90.99 Aligned_cols=175 Identities=14% Similarity=0.187 Sum_probs=110.7
Q ss_pred cccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcc---cCCCCCCEEEEEEe-CCcccHHHHHHHHHH
Q 002569 160 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFV---DNPTDFDSVIWVVV-SKDLQLEKIQETIGK 235 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~~f~~~~wv~~-s~~~~~~~l~~~i~~ 235 (906)
+++|.+..++.+..++..+.-.+.+.++|+.|+||||+|+.++...- ....|+|...|... +......+ .+++.+
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~ 83 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIE 83 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHH
Confidence 47899999999999998764567889999999999999999998651 12346666555442 22222222 222223
Q ss_pred HhCCCCCccccCCHHHHHHHHHHHhccCcEEEEEcccc--chhhhhhcCCc---CCCCcEEEEEecccccc-cC-CCccc
Q 002569 236 KIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLW--ERVDLKKVGVP---LPKNSAVVFTTRFVDVC-GG-MEARR 308 (906)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~--~~~~~~~~~~~---~~~gs~iivTtR~~~v~-~~-~~~~~ 308 (906)
.+... -..+++-++|+|+++ +...+..+... .+.++.+|++|.+.+.. .. .+...
T Consensus 84 ~~~~~------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 84 EVNKK------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ 145 (313)
T ss_pred HHhcC------------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce
Confidence 22111 012455567777764 33444444322 34488888888654322 11 12346
Q ss_pred eEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHH
Q 002569 309 KFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITI 360 (906)
Q Consensus 309 ~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 360 (906)
.+.+.++++++....+.+...... .+.+..++..++|.|.-+...
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 146 IYKLNRLSKEEIEKFISYKYNDIK-------EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred eeeCCCcCHHHHHHHHHHHhcCCC-------HHHHHHHHHHcCCCHHHHHHH
Confidence 889999999999888876653221 445778899999998765433
No 56
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.50 E-value=3.3e-06 Score=92.26 Aligned_cols=192 Identities=13% Similarity=0.127 Sum_probs=109.4
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCC-EEEEEEeCCcccHHHHHHHHHH--
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD-SVIWVVVSKDLQLEKIQETIGK-- 235 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~l~~~i~~-- 235 (906)
.+++|++..++.+..++..+ ..+.+.++|+.|+||||+|+.+++... ...+. ..++++++...+ .....+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~-~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~--~~~~~~~~~~ 89 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP-NLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFD--QGKKYLVEDP 89 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhh--cchhhhhcCc
Confidence 45899999999999988776 556788999999999999999998872 22222 234554433110 00000000
Q ss_pred ----HhCCCCCccccCCHHHHHHHH-HHH---h--ccCcEEEEEccccchh--h---hhhcCCcCCCCcEEEEEeccc-c
Q 002569 236 ----KIGLYTDSWKDRSLEEKAQDI-FKT---L--SKKKFVLLLDDLWERV--D---LKKVGVPLPKNSAVVFTTRFV-D 299 (906)
Q Consensus 236 ----~l~~~~~~~~~~~~~~~~~~l-~~~---l--~~kr~LlVlDdv~~~~--~---~~~~~~~~~~gs~iivTtR~~-~ 299 (906)
..+.. .. ......+..+.+ ... . .+.+-+||+||+.... . +..+....+..+++|+|+... .
T Consensus 90 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 90 RFAHFLGTD-KR-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred chhhhhhhh-hh-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 00000 00 000111122221 111 1 1345589999996431 1 222222233467788777542 2
Q ss_pred cccCC-CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHH
Q 002569 300 VCGGM-EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITI 360 (906)
Q Consensus 300 v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 360 (906)
+...+ .....+.+.+++.++...++.+.+.......+ .+....+++.++|.+-.+...
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~~~ 226 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAILT 226 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 22211 23457889999999999999887654432222 678889999999987655443
No 57
>PRK08727 hypothetical protein; Validated
Probab=98.50 E-value=1.1e-06 Score=89.56 Aligned_cols=163 Identities=13% Similarity=0.108 Sum_probs=96.6
Q ss_pred ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCC
Q 002569 161 VVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLY 240 (906)
Q Consensus 161 ~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~ 240 (906)
++|-......+.....+. ....+.|+|..|+|||+|++++++... .....+.|++..+ ....+.
T Consensus 22 ~~~~~n~~~~~~~~~~~~-~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~------ 85 (233)
T PRK08727 22 IAAPDGLLAQLQALAAGQ-SSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLR------ 85 (233)
T ss_pred cCCcHHHHHHHHHHHhcc-CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHH------
Confidence 334333444443333332 446799999999999999999998872 2233566765422 111111
Q ss_pred CCccccCCHHHHHHHHHHHhccCcEEEEEccccch---hhhhh-cC---CcC-CCCcEEEEEeccccc---------ccC
Q 002569 241 TDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWER---VDLKK-VG---VPL-PKNSAVVFTTRFVDV---------CGG 303 (906)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---~~~~~-~~---~~~-~~gs~iivTtR~~~v---------~~~ 303 (906)
. ..+.+ .+.-+|||||+... ..+.. +. ... ..|..||+|++...- .+.
T Consensus 86 ----------~----~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SR 150 (233)
T PRK08727 86 ----------D----ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSR 150 (233)
T ss_pred ----------H----HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHH
Confidence 0 11111 13358999998632 12221 11 111 126679999985322 222
Q ss_pred CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHH
Q 002569 304 MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLAL 357 (906)
Q Consensus 304 ~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai 357 (906)
+.....+++++++.++-..++.+++.......+ ++...-|++.+.|..-.+
T Consensus 151 l~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 151 LAQCIRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 233568899999999999999987754332223 677888888888766554
No 58
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.48 E-value=1.6e-06 Score=88.38 Aligned_cols=170 Identities=15% Similarity=0.123 Sum_probs=101.2
Q ss_pred CcccchhH-HHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHh
Q 002569 159 PTVVGLQS-QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKI 237 (906)
Q Consensus 159 ~~~vgr~~-~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l 237 (906)
..++|... .+..+..+.... ..+.+.|+|+.|+|||+|++++++... .....+.|+.+.....
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~-~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~------------ 86 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQE-HSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW------------ 86 (235)
T ss_pred ccccCccHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh------------
Confidence 34456333 333333443333 557899999999999999999999862 2234566776532100
Q ss_pred CCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccch---hhhhh----cCCcC-CCC-cEEEEEeccccc--------
Q 002569 238 GLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWER---VDLKK----VGVPL-PKN-SAVVFTTRFVDV-------- 300 (906)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---~~~~~----~~~~~-~~g-s~iivTtR~~~v-------- 300 (906)
...+.. +.+.. --+|++||+... ..|+. +.... ..| .++|+||+...-
T Consensus 87 ----------~~~~~~----~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~ 151 (235)
T PRK08084 87 ----------FVPEVL----EGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPD 151 (235)
T ss_pred ----------hhHHHH----HHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHH
Confidence 001111 11111 237899999542 23322 11111 124 479999985422
Q ss_pred -ccCCCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHHH
Q 002569 301 -CGGMEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIGR 362 (906)
Q Consensus 301 -~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~ 362 (906)
.+.+.....+++++++.++-.+++.+++.......+ +++..-|++.+.|..-++..+-.
T Consensus 152 L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 152 LASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred HHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHHHH
Confidence 233445678999999999999999887654332223 67888888888887665544433
No 59
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=1.1e-05 Score=91.10 Aligned_cols=190 Identities=14% Similarity=0.114 Sum_probs=109.7
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG 238 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 238 (906)
.+++|.+...+.|..++..+.-.+.+.++|+.|+||||+|+.+++... ...... ...++.-..-+.+...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln-C~~~~~-------~~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN-CETGVT-------STPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCcCCC-------CCCCccCHHHHHHhcCCC
Confidence 358999999999999998773457889999999999999999988862 111110 001111111111111000
Q ss_pred CCC---CccccCCHHHHHHHHHH----HhccCcEEEEEccccch--hhhhhcC---CcCCCCcEEEEEecccc-cc-cCC
Q 002569 239 LYT---DSWKDRSLEEKAQDIFK----TLSKKKFVLLLDDLWER--VDLKKVG---VPLPKNSAVVFTTRFVD-VC-GGM 304 (906)
Q Consensus 239 ~~~---~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~--~~~~~~~---~~~~~gs~iivTtR~~~-v~-~~~ 304 (906)
..- +.......++..+.+.. -..+++-++|+|+|... .....+. .-.+.+.++|++|.+.. +. ...
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIl 166 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVI 166 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHH
Confidence 000 00011122222222111 12356679999999753 2333332 22233667777775432 21 112
Q ss_pred CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHH
Q 002569 305 EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALIT 359 (906)
Q Consensus 305 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~ 359 (906)
+....+++.+++.++....+.+.+........ .+....|++.++|.+-.+..
T Consensus 167 SRCq~feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 167 SRCLQFTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred HhhheeeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 34578999999999999999888765432222 66788899999998855543
No 60
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=4.3e-06 Score=97.25 Aligned_cols=188 Identities=14% Similarity=0.125 Sum_probs=107.8
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCE-EEEEEeCCcccHHHHHHHHHHHh
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDS-VIWVVVSKDLQLEKIQETIGKKI 237 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~l~~~i~~~l 237 (906)
.+++|.+..++.|.+++..+.-...+.++|+.|+||||+|+.+++.+. ....... -+..| ..-..|....
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln-ce~~~~~~pCg~C--------~sC~~i~~g~ 86 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN-CEQGVTATPCGVC--------SSCVEIAQGR 86 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc-CccCCCCCCCCCc--------hHHHHHhcCC
Confidence 358999999999999988762344568999999999999999998872 1111100 00000 0000000000
Q ss_pred C-----CCCCccccCCHH---HHHHHHHH-HhccCcEEEEEccccch--hhhhhcCCc---CCCCcEEEEEecc-ccccc
Q 002569 238 G-----LYTDSWKDRSLE---EKAQDIFK-TLSKKKFVLLLDDLWER--VDLKKVGVP---LPKNSAVVFTTRF-VDVCG 302 (906)
Q Consensus 238 ~-----~~~~~~~~~~~~---~~~~~l~~-~l~~kr~LlVlDdv~~~--~~~~~~~~~---~~~gs~iivTtR~-~~v~~ 302 (906)
. +... .....+ ++...+.. -..+++-++|||++... .....+... .+...++|++|.+ ..+..
T Consensus 87 ~~DviEidAa--s~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~ 164 (944)
T PRK14949 87 FVDLIEVDAA--SRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (944)
T ss_pred CceEEEeccc--cccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchH
Confidence 0 0000 001111 12222211 12356789999999753 333333222 2336666665544 33321
Q ss_pred C-CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHH
Q 002569 303 G-MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITI 360 (906)
Q Consensus 303 ~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 360 (906)
. ......|++.+++.++....+.+.+...... .-.+....|++.++|.|--+..+
T Consensus 165 TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~---~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 165 TVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP---FEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 2234789999999999999998876543211 22567889999999998655444
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.44 E-value=1.2e-08 Score=105.35 Aligned_cols=283 Identities=14% Similarity=0.130 Sum_probs=143.1
Q ss_pred eeeEEeccccCCCCCC----CCCCCCCceEEEeecCC-Ccccc-ccccCCCCceeEEEccCcccccccc--ccccccccc
Q 002569 517 IVRRLSLMRNSIDNLP----TVPTCPHLLTLFLNRNP-LRTIT-GGFFQSMSCLTVLKMSDNETLRQLP--MGISKLVSL 588 (906)
Q Consensus 517 ~lr~L~l~~~~~~~l~----~~~~~~~Lr~L~l~~~~-l~~~~-~~~~~~l~~L~~L~Ls~~~~i~~lp--~~i~~L~~L 588 (906)
.++.|++.+..-.... ...+||++..|.+.+|. +++.. .++-..+++|++|+|..|..++... .-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 4677787776433222 23678999999988886 33222 1223578899999999987777642 234557899
Q ss_pred ceeecccC-cccc--cChhhhCCCCCcEecccccccccccChhhhc----CCCCCceeecccccccCCCCCCCccccccH
Q 002569 589 QLLDISKT-SVVE--LPEELKALVNLKCLNLDWAKELVVVPQQLLS----NFSRLRVLRMFAIGVRSPYGLSSSWHENVA 661 (906)
Q Consensus 589 ~~L~L~~~-~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 661 (906)
+||++++| .|+. +-.-...+++|+.+.++||. ..+...+. .+.-+..+++..|..
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~---e~~le~l~~~~~~~~~i~~lnl~~c~~--------------- 280 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL---ELELEALLKAAAYCLEILKLNLQHCNQ--------------- 280 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccc---cccHHHHHHHhccChHhhccchhhhcc---------------
Confidence 99999998 4442 22233455556677666763 23322222 222233333333211
Q ss_pred HhhcCCCCccEEEEEEechhhHHHHhhcccccccceeeEecccCCCcccccccc-cccCCCcEEEecCCCCCCceeeecc
Q 002569 662 EELLGLKYLEVLEITFRSFKAYQTFLSSQKLRSCTQALLLDEFDREESIDVADL-ADLEQLNTLSFVGCDWPGGLRIDYK 740 (906)
Q Consensus 662 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~l~~~~~ 740 (906)
++... +......+..|+.|..+++...++..+..+ .+..+|+.|-+++|...+.....
T Consensus 281 ------------------lTD~~-~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft-- 339 (483)
T KOG4341|consen 281 ------------------LTDED-LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT-- 339 (483)
T ss_pred ------------------ccchH-HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh--
Confidence 11100 111111223445555555544443333222 23456666666666543322111
Q ss_pred cccccCCCcccCCCCCEEEEecCCCCCCc--hhh-hcCCCccEEeeecCcchHHHhhcCCCCCcCcccCcCCCcCCCccE
Q 002569 741 DMVQKSRQPYVFRSLEEVTVDSCRNLKHL--TFL-VFAPNLKSISVRYCNDMEEIISAGEFDDIPEMTGIISSPFAKLQR 817 (906)
Q Consensus 741 ~~~~l~~~~~~~~~L~~L~l~~c~~l~~l--~~l-~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~ 817 (906)
......+.|+.+++.+|.....- -.+ ..+|.|+.|.++.|..+++..... +. ........|..
T Consensus 340 ------~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~-------l~-~~~c~~~~l~~ 405 (483)
T KOG4341|consen 340 ------MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRH-------LS-SSSCSLEGLEV 405 (483)
T ss_pred ------hhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhh-------hh-hccccccccce
Confidence 11245566666666666432221 111 245666666666666555441100 00 12234555666
Q ss_pred EecCCccccccccCC-CCCCCCccEEeecCCCCCCC
Q 002569 818 LRLERLRNLKSIYWK-PLPLPRLKELEFRGCDSLKK 852 (906)
Q Consensus 818 L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~~L~~ 852 (906)
|.+.+|+.+..-... ...+++|+.+++.+|....+
T Consensus 406 lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 406 LELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred eeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 666666654433221 22355666666665544443
No 62
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.5e-05 Score=86.06 Aligned_cols=197 Identities=17% Similarity=0.208 Sum_probs=129.3
Q ss_pred CcccchhHHHHHHHHHHhc---CCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHH
Q 002569 159 PTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGK 235 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~ 235 (906)
..+.+|+.+++++...|.. +....-+.|+|..|.|||+.++.|.+.........+ +++|++-...+...++..|+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 3489999999999988864 224445999999999999999999999843222333 899999999999999999999
Q ss_pred HhCCCCCccccCCHHHHHHHHHHHhc--cCcEEEEEccccchhh-----hhhcCCcCCC-CcEEEE--Eecccc------
Q 002569 236 KIGLYTDSWKDRSLEEKAQDIFKTLS--KKKFVLLLDDLWERVD-----LKKVGVPLPK-NSAVVF--TTRFVD------ 299 (906)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~-----~~~~~~~~~~-gs~iiv--TtR~~~------ 299 (906)
+++... ....+..+....+.+.+. ++.+++|||++..... +-.+...... .++|++ .+.+..
T Consensus 96 ~~~~~p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 96 KLGKVP--LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HcCCCC--CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 986211 133556667777777765 4789999999975321 2222111111 454443 333222
Q ss_pred --cccCCCccceEEeccCChHhHHHHHHHHhccc--cccCCCCchHHHHHHHHHhCCC-hHHHHH
Q 002569 300 --VCGGMEARRKFKVECLSDEDAWELFREKVGEE--TIESHHSIPELAQTVANECGGL-PLALIT 359 (906)
Q Consensus 300 --v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~--~~~~~~~~~~~~~~i~~~c~G~-Plai~~ 359 (906)
|.+.++. ..+..+|-+.+|-...+..++... ....+++.-++...++..-+|. -.||..
T Consensus 174 ~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidi 237 (366)
T COG1474 174 PRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDI 237 (366)
T ss_pred hhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHH
Confidence 2223333 337899999999999999987532 1123344455555555555653 344433
No 63
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=1e-05 Score=88.44 Aligned_cols=189 Identities=17% Similarity=0.209 Sum_probs=106.3
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG 238 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 238 (906)
.+++|.+..++.+...+..+.-.+.+.++|+.|+||||+|+.+++... ...... ..++..-..-.++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 458999999999999888763456789999999999999999998762 111110 000000001111111000
Q ss_pred CCC---CccccCCHHHHHHHHHHHh-----ccCcEEEEEccccchh--hhhhcCCc---CCCCcEEEEEeccc-ccccC-
Q 002569 239 LYT---DSWKDRSLEEKAQDIFKTL-----SKKKFVLLLDDLWERV--DLKKVGVP---LPKNSAVVFTTRFV-DVCGG- 303 (906)
Q Consensus 239 ~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~~~~~~~~---~~~gs~iivTtR~~-~v~~~- 303 (906)
... +.......++. +.+.+.+ .+++-++|+|++.... .+..+... .+...++|++|.+. .+...
T Consensus 88 ~d~~~~~~~~~~~v~~i-r~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 88 LDLIEIDAASRTKVEEM-REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTI 166 (363)
T ss_pred CceEEecccccCCHHHH-HHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHH
Confidence 000 00000112221 1222221 2455699999997542 23333222 23366777766543 22211
Q ss_pred CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHH
Q 002569 304 MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALIT 359 (906)
Q Consensus 304 ~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~ 359 (906)
.+....+++.+++.++..+.+.+.+......- -.+.+..|++.++|.|-.+..
T Consensus 167 ~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i---~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 167 LSRCLQFKLKIISEEKIFNFLKYILIKESIDT---DEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 12246789999999999998888765432111 256778899999998864433
No 64
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=4.4e-06 Score=93.93 Aligned_cols=194 Identities=17% Similarity=0.164 Sum_probs=109.5
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHH--
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKK-- 236 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~-- 236 (906)
.++||.+..++.|.+++..+.-.+.+.++|..|+||||+|+.+.+.+. .... +..--+ .+..+.....-+.|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn-C~~p-~~~~g~-~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN-CTGA-DGEGGI-TAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCc-cccccC-CCCCCcccHHHHHHHcCCC
Confidence 358999999999999998773456779999999999999999998872 1100 000000 00001111111111110
Q ss_pred ---hCCCCCccccCCHHHHHHHHHHH----hccCcEEEEEccccch--hhhhhcCCcC---CCCcEEEEEec-ccccccC
Q 002569 237 ---IGLYTDSWKDRSLEEKAQDIFKT----LSKKKFVLLLDDLWER--VDLKKVGVPL---PKNSAVVFTTR-FVDVCGG 303 (906)
Q Consensus 237 ---l~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~--~~~~~~~~~~---~~gs~iivTtR-~~~v~~~ 303 (906)
+.+.. ......+++.+.+... ..++.-++|||++... ..+..+...+ +.+.++|++|. ...+...
T Consensus 93 pDviEIdA--as~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT 170 (700)
T PRK12323 93 VDYIEMDA--ASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 170 (700)
T ss_pred CcceEecc--cccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence 00000 0112233333222221 1356679999999753 3333333322 22556555544 4444321
Q ss_pred -CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHH
Q 002569 304 -MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITI 360 (906)
Q Consensus 304 -~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 360 (906)
.+....+.+..++.++..+.+.+.+....... ..+..+.|++.++|.|.-+..+
T Consensus 171 IrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~---d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 171 VLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH---EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 13346899999999999999988765433221 1456788999999999755444
No 65
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.40 E-value=3.7e-06 Score=81.76 Aligned_cols=172 Identities=20% Similarity=0.236 Sum_probs=92.9
Q ss_pred CcccchhHHHHHHHHHHhc----CCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHH
Q 002569 159 PTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIG 234 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~ 234 (906)
.+|+|.+.-++.+.-++.. ++....+..||++|+||||||+.+++.. ...|. +++.+.-
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i----------- 86 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAI----------- 86 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC------------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhh-----------
Confidence 4689999888876554432 2367889999999999999999999998 33442 2222110
Q ss_pred HHhCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccch--hh-------hhhc------C---------CcCCCCcE
Q 002569 235 KKIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWER--VD-------LKKV------G---------VPLPKNSA 290 (906)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~-------~~~~------~---------~~~~~gs~ 290 (906)
....+++..+.. + +++.+|.+|++... .+ .+.. + ..++.=+-
T Consensus 87 ------------~k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 87 ------------EKAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp -------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred ------------hhHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 001112222211 2 24557778888642 11 1111 0 01111233
Q ss_pred EEEEecccccccCCCc--cceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHHHHh
Q 002569 291 VVFTTRFVDVCGGMEA--RRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIGRAM 364 (906)
Q Consensus 291 iivTtR~~~v~~~~~~--~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l 364 (906)
|=.|||...+...+.. ....+++..+.+|-.++..+.+..-...-+ ++.+.+|++.|.|-|--+.-+-...
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~---~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEID---EDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHhcCCChHHHHHHHHHH
Confidence 4457776555433322 234589999999999999988765443222 7889999999999997665554443
No 66
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=8.7e-06 Score=91.80 Aligned_cols=189 Identities=20% Similarity=0.159 Sum_probs=109.4
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG 238 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 238 (906)
.+++|.+..++.|..++..+.-...+.++|++|+||||+|+.+++.. .....+...+|.|.+... +......-+..+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESCLA-VRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhhHH-HhcCCCCceEEec
Confidence 35899999999999988876334567999999999999999999887 222223233443321100 0000000000000
Q ss_pred CCCCccccCCHHHHHHHHHHH-----hccCcEEEEEccccch--hhhhhcCCcC---CCCcEEEEEec-ccccccCC-Cc
Q 002569 239 LYTDSWKDRSLEEKAQDIFKT-----LSKKKFVLLLDDLWER--VDLKKVGVPL---PKNSAVVFTTR-FVDVCGGM-EA 306 (906)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~~~~---~~gs~iivTtR-~~~v~~~~-~~ 306 (906)
.. .....+.. +.+.+. ..+++-++|+|+++.. ..+..+...+ +....+|++|. ...+...+ ..
T Consensus 92 ~~----~~~~vd~i-R~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 92 AA----SNNSVEDV-RDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred cc----ccCCHHHH-HHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 00 11122221 122222 2346679999999753 3344433222 22445555554 33332222 33
Q ss_pred cceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHH
Q 002569 307 RRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLAL 357 (906)
Q Consensus 307 ~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai 357 (906)
...+++.+++.++....+.+.+.......+ .+....|++.++|.+--+
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDA 214 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 568999999999999999998754432222 577889999999998644
No 67
>PLN03025 replication factor C subunit; Provisional
Probab=98.38 E-value=7.4e-06 Score=88.08 Aligned_cols=177 Identities=14% Similarity=0.142 Sum_probs=105.6
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCC-EEEEEEeCCcccHHHHHHHHHHHh
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD-SVIWVVVSKDLQLEKIQETIGKKI 237 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~l~~~i~~~l 237 (906)
.+++|.++.++.|..++..+ ..+.+.++|++|+||||+|+.+++... ...|. .++-+..++..... ..+++++.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~-~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~-~vr~~i~~~ 88 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG-NMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGID-VVRNKIKMF 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHH-HHHHHHHHH
Confidence 35789998888888877665 566688999999999999999998862 12232 22222223222222 122222211
Q ss_pred CCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccchh--h---hhhcCCcCCCCcEEEEEeccc-ccccCC-CccceE
Q 002569 238 GLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWERV--D---LKKVGVPLPKNSAVVFTTRFV-DVCGGM-EARRKF 310 (906)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~---~~~~~~~~~~gs~iivTtR~~-~v~~~~-~~~~~~ 310 (906)
..... ..-.++.-+++||+++... . +.......+..+++|+++... .+.... +....+
T Consensus 89 ~~~~~---------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 89 AQKKV---------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred Hhccc---------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcc
Confidence 10000 0002356799999997531 2 222222233467777776532 221111 223578
Q ss_pred EeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHH
Q 002569 311 KVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLAL 357 (906)
Q Consensus 311 ~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai 357 (906)
+++++++++....+...+......-+ .+....|++.++|..-.+
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 99999999999999888765442222 567889999999977544
No 68
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.38 E-value=8.7e-08 Score=97.06 Aligned_cols=144 Identities=12% Similarity=0.066 Sum_probs=78.4
Q ss_pred hcCCCCccEEEEEEechhhHHH--HhhcccccccceeeEecccCCCc---ccccccccccCCCcEEEecCCCCCCceeee
Q 002569 664 LLGLKYLEVLEITFRSFKAYQT--FLSSQKLRSCTQALLLDEFDREE---SIDVADLADLEQLNTLSFVGCDWPGGLRID 738 (906)
Q Consensus 664 l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~ 738 (906)
.++-++|+++.+..|.+..... +....+..+.|+.+.+..|.... .+....+..+++|+.|+|..|.+.......
T Consensus 153 ~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~ 232 (382)
T KOG1909|consen 153 AASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA 232 (382)
T ss_pred cCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence 3445667777777666543221 22222223456666665554211 112245777889999999888765421111
Q ss_pred cccccccCCCcccCCCCCEEEEecCCCCCCch------h-hhcCCCccEEeeecCcchHHHhhcCCCCCcCcccCcCCCc
Q 002569 739 YKDMVQKSRQPYVFRSLEEVTVDSCRNLKHLT------F-LVFAPNLKSISVRYCNDMEEIISAGEFDDIPEMTGIISSP 811 (906)
Q Consensus 739 ~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~------~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~l~~~~~~~ 811 (906)
+.....++++|+.|++++| .+++=- . -...|+|+.|.+.+|..-.+-...-. .....
T Consensus 233 ------LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la---------~~~~e 296 (382)
T KOG1909|consen 233 ------LAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA---------ACMAE 296 (382)
T ss_pred ------HHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH---------HHHhc
Confidence 1112245678899999988 554321 1 12468888888888764433322000 12233
Q ss_pred CCCccEEecCCc
Q 002569 812 FAKLQRLRLERL 823 (906)
Q Consensus 812 ~~~L~~L~l~~~ 823 (906)
.|.|+.|.++++
T Consensus 297 k~dL~kLnLngN 308 (382)
T KOG1909|consen 297 KPDLEKLNLNGN 308 (382)
T ss_pred chhhHHhcCCcc
Confidence 667777777764
No 69
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.38 E-value=4.8e-06 Score=97.54 Aligned_cols=170 Identities=21% Similarity=0.296 Sum_probs=99.1
Q ss_pred cccchhHHHH---HHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHH
Q 002569 160 TVVGLQSQLE---QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKK 236 (906)
Q Consensus 160 ~~vgr~~~~~---~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~ 236 (906)
+++|.+..+. .+...+..+ ..+.+.++|++|+||||+|+.+++.. ...|. .++.+. ....
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~-~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i~--------- 91 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKAD-RVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGVK--------- 91 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhhH---------
Confidence 4789887764 455555555 67788999999999999999999876 23341 111110 0011
Q ss_pred hCCCCCccccCCHHHHHHHHHHHh--ccCcEEEEEccccc--hhhhhhcCCcCCCCcEEEEEecccc----ccc-CCCcc
Q 002569 237 IGLYTDSWKDRSLEEKAQDIFKTL--SKKKFVLLLDDLWE--RVDLKKVGVPLPKNSAVVFTTRFVD----VCG-GMEAR 307 (906)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~--~~~~~~~~~~~~~gs~iivTtR~~~----v~~-~~~~~ 307 (906)
+..+......+.+ .+++.++||||++. ......+...+..|+.++|+++.+. +.. ..+..
T Consensus 92 -----------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR~ 160 (725)
T PRK13341 92 -----------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRS 160 (725)
T ss_pred -----------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhccc
Confidence 1111111221221 24678999999964 3344444443444666666433222 111 11224
Q ss_pred ceEEeccCChHhHHHHHHHHhcccc----ccCCCCchHHHHHHHHHhCCChHHH
Q 002569 308 RKFKVECLSDEDAWELFREKVGEET----IESHHSIPELAQTVANECGGLPLAL 357 (906)
Q Consensus 308 ~~~~l~~L~~~e~~~Lf~~~a~~~~----~~~~~~~~~~~~~i~~~c~G~Plai 357 (906)
..+.+++++.++...++.+.+.... .....--.+....|++.+.|..-.+
T Consensus 161 ~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 161 RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 5789999999999999988764210 0011112567788999998875433
No 70
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.37 E-value=6.5e-07 Score=90.98 Aligned_cols=101 Identities=17% Similarity=0.100 Sum_probs=66.0
Q ss_pred HHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCc--ccHHHHHHHHHHHhCCCCCccccC--
Q 002569 172 WRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKD--LQLEKIQETIGKKIGLYTDSWKDR-- 247 (906)
Q Consensus 172 ~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~l~~~i~~~l~~~~~~~~~~-- 247 (906)
++.+..=.....++|+|++|+|||||++.+++.. . ..+|+.++|+.+... .++.++++.+...+-...-+.+..
T Consensus 7 id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l-~-~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~ 84 (249)
T cd01128 7 VDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAI-T-KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERH 84 (249)
T ss_pred eeeecccCCCCEEEEECCCCCCHHHHHHHHHhcc-c-cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHH
Confidence 3444332356789999999999999999999998 3 348999999997776 789999999933221111000000
Q ss_pred --CHHHHHHHHHHH-hccCcEEEEEccccc
Q 002569 248 --SLEEKAQDIFKT-LSKKKFVLLLDDLWE 274 (906)
Q Consensus 248 --~~~~~~~~l~~~-l~~kr~LlVlDdv~~ 274 (906)
......+....+ -.++++++++|++..
T Consensus 85 ~~~~~~~~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 85 VQVAEMVLEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHH
Confidence 011112222222 247899999999954
No 71
>PRK09087 hypothetical protein; Validated
Probab=98.36 E-value=5.7e-06 Score=83.46 Aligned_cols=139 Identities=16% Similarity=0.183 Sum_probs=89.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKT 259 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 259 (906)
..+.+.|+|+.|+|||+|++.++... . ..|++.. .+..++...
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~-------~~~i~~~------~~~~~~~~~----------------------- 85 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-D-------ALLIHPN------EIGSDAANA----------------------- 85 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-C-------CEEecHH------HcchHHHHh-----------------------
Confidence 35679999999999999999988765 1 1133221 111111111
Q ss_pred hccCcEEEEEccccch----hhhhhcCCcCCC-CcEEEEEecc---------cccccCCCccceEEeccCChHhHHHHHH
Q 002569 260 LSKKKFVLLLDDLWER----VDLKKVGVPLPK-NSAVVFTTRF---------VDVCGGMEARRKFKVECLSDEDAWELFR 325 (906)
Q Consensus 260 l~~kr~LlVlDdv~~~----~~~~~~~~~~~~-gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 325 (906)
+.+ -+|++||+... ..+-.+...+.. |..||+|++. ++..+.+.....+++++++.++-.+++.
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 111 27888999532 222222222222 7889998873 2233344566789999999999999999
Q ss_pred HHhccccccCCCCchHHHHHHHHHhCCChHHHHHH
Q 002569 326 EKVGEETIESHHSIPELAQTVANECGGLPLALITI 360 (906)
Q Consensus 326 ~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 360 (906)
+++.......+ +++..-|++.+.|..-++..+
T Consensus 164 ~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 164 KLFADRQLYVD---PHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHH
Confidence 99865432233 678888899888887766543
No 72
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.35 E-value=8.9e-07 Score=81.78 Aligned_cols=116 Identities=21% Similarity=0.271 Sum_probs=78.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccC--CCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDN--PTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIF 257 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 257 (906)
+.+++.|+|.+|+|||++++.+.+..... ...-..++|+.+....+...+...|+.+++..... ..+..++.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 45789999999999999999999986210 00145678999988889999999999999876532 356777788888
Q ss_pred HHhccCcE-EEEEccccch---hhhhhcCCcC-CCCcEEEEEecc
Q 002569 258 KTLSKKKF-VLLLDDLWER---VDLKKVGVPL-PKNSAVVFTTRF 297 (906)
Q Consensus 258 ~~l~~kr~-LlVlDdv~~~---~~~~~~~~~~-~~gs~iivTtR~ 297 (906)
+.+...+. +||+|++... ..++.+.... ..+.+||+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 88877655 9999999654 2222331111 226677776653
No 73
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.34 E-value=1.8e-05 Score=85.77 Aligned_cols=177 Identities=15% Similarity=0.161 Sum_probs=104.9
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCC-EEEEEEeCCcccHHHHHHHHHHHh
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD-SVIWVVVSKDLQLEKIQETIGKKI 237 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~l~~~i~~~l 237 (906)
.+++|++..++.+..++... ..+.+.++|..|+||||+|+.+++... ...+. ..+-+..+.......+ .+.+..+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~-~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~~~~i~~~~~~~~~~~~~-~~~i~~~ 92 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK-NMPHLLFAGPPGTGKTTAALALARELY--GEDWRENFLELNASDERGIDVI-RNKIKEF 92 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHc--CCccccceEEeccccccchHHH-HHHHHHH
Confidence 34899999999999998765 566789999999999999999999862 12222 1122222222111111 1111111
Q ss_pred CCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccch--hh---hhhcCCcCCCCcEEEEEeccc-ccccCC-CccceE
Q 002569 238 GLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWER--VD---LKKVGVPLPKNSAVVFTTRFV-DVCGGM-EARRKF 310 (906)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~---~~~~~~~~~~gs~iivTtR~~-~v~~~~-~~~~~~ 310 (906)
....+ .....+-++++|++... .. +..+....+..+++|+++... .+.... .....+
T Consensus 93 ~~~~~----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 93 ARTAP----------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred HhcCC----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhee
Confidence 00000 00123568999998643 12 222222233366777766432 221111 223468
Q ss_pred EeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHH
Q 002569 311 KVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALI 358 (906)
Q Consensus 311 ~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 358 (906)
++.+++.++....+.+.+......-+ .+....+++.++|.+.-+.
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 99999999999999888765432222 6778899999999886543
No 74
>PF13173 AAA_14: AAA domain
Probab=98.34 E-value=1.2e-06 Score=80.29 Aligned_cols=117 Identities=18% Similarity=0.168 Sum_probs=77.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHh
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTL 260 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 260 (906)
.+++.|.|+.|+||||++++++.+. . ....++|++..+........ .+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~~~~~~~~------------------~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDPRDRRLAD------------------PD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCHHHHHHhh------------------hh-hHHHHHHhh
Confidence 4789999999999999999999887 1 44567787766543211000 00 223333333
Q ss_pred ccCcEEEEEccccchhhhhhcCCcCCC---CcEEEEEecccccccC------CCccceEEeccCChHhH
Q 002569 261 SKKKFVLLLDDLWERVDLKKVGVPLPK---NSAVVFTTRFVDVCGG------MEARRKFKVECLSDEDA 320 (906)
Q Consensus 261 ~~kr~LlVlDdv~~~~~~~~~~~~~~~---gs~iivTtR~~~v~~~------~~~~~~~~l~~L~~~e~ 320 (906)
..++.+++||++....+|......+-+ ..+|++|+.+...... .+....++|.||+..|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 447889999999877776655433333 5799999986555321 23345789999998774
No 75
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.34 E-value=5.5e-06 Score=84.26 Aligned_cols=173 Identities=18% Similarity=0.179 Sum_probs=105.9
Q ss_pred cccchhHHHHH---HHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHH
Q 002569 160 TVVGLQSQLEQ---VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKK 236 (906)
Q Consensus 160 ~~vgr~~~~~~---l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~ 236 (906)
++||.+..+-+ |...+..+ ..+.+.+||++|+||||||+.+...- + .+ ...||..|....-..-.+.|.++
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~-~ipSmIlWGppG~GKTtlArlia~ts-k--~~--SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQN-RIPSMILWGPPGTGKTTLARLIASTS-K--KH--SYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcC-CCCceEEecCCCCchHHHHHHHHhhc-C--CC--ceEEEEEeccccchHHHHHHHHH
Confidence 35665544322 22333344 88999999999999999999999886 2 22 15677777654433444444443
Q ss_pred hCCCCCccccCCHHHHHHHHHHHhccCcEEEEEcccc--chhhhhhcCCcCCCCcEEEE--Eeccccc---ccCCCccce
Q 002569 237 IGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLW--ERVDLKKVGVPLPKNSAVVF--TTRFVDV---CGGMEARRK 309 (906)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~--~~~~~~~~~~~~~~gs~iiv--TtR~~~v---~~~~~~~~~ 309 (906)
.. -...+.++|.+|.+|.|. +..+-+.+.....+|.-++| ||.+... +..+....+
T Consensus 213 aq-----------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~V 275 (554)
T KOG2028|consen 213 AQ-----------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRV 275 (554)
T ss_pred HH-----------------HHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccce
Confidence 21 112356789999999995 34444444444444887777 5555433 222345678
Q ss_pred EEeccCChHhHHHHHHHHhc---cccc--cCCCC----c-hHHHHHHHHHhCCChH
Q 002569 310 FKVECLSDEDAWELFREKVG---EETI--ESHHS----I-PELAQTVANECGGLPL 355 (906)
Q Consensus 310 ~~l~~L~~~e~~~Lf~~~a~---~~~~--~~~~~----~-~~~~~~i~~~c~G~Pl 355 (906)
+.|++|..++...++.+... .... ..-++ + ..+..-++..|.|..-
T Consensus 276 fvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 276 FVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred eEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 99999999999999988542 1111 11111 1 2355666777888754
No 76
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.34 E-value=4.6e-06 Score=78.79 Aligned_cols=120 Identities=24% Similarity=0.179 Sum_probs=71.9
Q ss_pred cchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCC
Q 002569 162 VGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYT 241 (906)
Q Consensus 162 vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~ 241 (906)
+|++..+..+...+... ..+.+.|+|++|+||||+++.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~-~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELP-PPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh-----
Confidence 47888888988888765 567899999999999999999999872 222456666655433222211111000
Q ss_pred CccccCCHHHHHHHHHHHhccCcEEEEEccccch-----hhhhhcCCcC------CCCcEEEEEecccc
Q 002569 242 DSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWER-----VDLKKVGVPL------PKNSAVVFTTRFVD 299 (906)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----~~~~~~~~~~------~~gs~iivTtR~~~ 299 (906)
............++.++|+||++.. ..+....... ..+..||+||....
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111223456789999999842 2222221111 24778888887543
No 77
>PLN03150 hypothetical protein; Provisional
Probab=98.33 E-value=7.6e-07 Score=104.30 Aligned_cols=103 Identities=25% Similarity=0.346 Sum_probs=67.5
Q ss_pred ceEEEeecCCCccccccccCCCCceeEEEccCccccc-ccccccccccccceeecccCccc-ccChhhhCCCCCcEeccc
Q 002569 540 LLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLR-QLPMGISKLVSLQLLDISKTSVV-ELPEELKALVNLKCLNLD 617 (906)
Q Consensus 540 Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~-~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~ 617 (906)
++.|+|++|.+....+..++.+++|+.|+|++| .+. .+|..++.+++|++|+|++|++. .+|..+++|++|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 666777777766544445667777777777777 443 66767777777777777777776 567777777777777777
Q ss_pred ccccccccChhhhcC-CCCCceeecccc
Q 002569 618 WAKELVVVPQQLLSN-FSRLRVLRMFAI 644 (906)
Q Consensus 618 ~~~~l~~lp~~~i~~-l~~L~~L~l~~~ 644 (906)
+|.....+|.. +.. +.++..+++.+|
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCC
Confidence 77555566665 333 335556665554
No 78
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.32 E-value=3.9e-07 Score=70.94 Aligned_cols=57 Identities=32% Similarity=0.552 Sum_probs=35.5
Q ss_pred CceeEEEccCccccccccc-ccccccccceeecccCcccccC-hhhhCCCCCcEeccccc
Q 002569 562 SCLTVLKMSDNETLRQLPM-GISKLVSLQLLDISKTSVVELP-EELKALVNLKCLNLDWA 619 (906)
Q Consensus 562 ~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~ 619 (906)
++|++|++++| .++.+|. .+.++++|++|++++|.++.+| ..+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35666666666 6666653 4566666666666666666553 35566666666666665
No 79
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1e-05 Score=88.76 Aligned_cols=188 Identities=14% Similarity=0.106 Sum_probs=107.0
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG 238 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 238 (906)
.+++|.+..+..|..++..+.-.+.+.++|+.|+||||+|+.+++... . ..... ...+.....- +.+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln-c-e~~~~--~~pCg~C~sC----~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN-C-ENPIG--NEPCNECTSC----LEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC-c-ccccC--ccccCCCcHH----HHHHccCC
Confidence 358999999999999988772235689999999999999999999872 1 11100 0001111111 11111111
Q ss_pred CCC---CccccCCHH---HHHHHHHHH-hccCcEEEEEccccch--hhhhhcCCcCC---CCcEEEEEec-ccccccC-C
Q 002569 239 LYT---DSWKDRSLE---EKAQDIFKT-LSKKKFVLLLDDLWER--VDLKKVGVPLP---KNSAVVFTTR-FVDVCGG-M 304 (906)
Q Consensus 239 ~~~---~~~~~~~~~---~~~~~l~~~-l~~kr~LlVlDdv~~~--~~~~~~~~~~~---~gs~iivTtR-~~~v~~~-~ 304 (906)
... +.......+ ++.+.+... ..++.-++|+|++... ..+..+...+. ....+|.+|. ...+... .
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 000 000011122 222222211 2356679999999753 33444433222 2555554444 3333222 2
Q ss_pred CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHH
Q 002569 305 EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLAL 357 (906)
Q Consensus 305 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai 357 (906)
+....|.+.+++.++..+.+.+.+......- -.+....|++.++|.+--+
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~---e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENVQY---DQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCChHHHH
Confidence 3346799999999999999888765443222 2677899999999998544
No 80
>PRK05642 DNA replication initiation factor; Validated
Probab=98.31 E-value=6.6e-06 Score=83.83 Aligned_cols=149 Identities=17% Similarity=0.242 Sum_probs=90.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHh
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTL 260 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 260 (906)
...+.|+|..|+|||+|++++++... ..-..++|++..+ +... . ..+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~------~~~~----------------~----~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAE------LLDR----------------G----PELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHH------HHhh----------------h----HHHHHhh
Confidence 46789999999999999999998762 2224567776432 1110 0 1122222
Q ss_pred ccCcEEEEEccccch---hhhhh-c---CCcCC-CCcEEEEEeccccc---------ccCCCccceEEeccCChHhHHHH
Q 002569 261 SKKKFVLLLDDLWER---VDLKK-V---GVPLP-KNSAVVFTTRFVDV---------CGGMEARRKFKVECLSDEDAWEL 323 (906)
Q Consensus 261 ~~kr~LlVlDdv~~~---~~~~~-~---~~~~~-~gs~iivTtR~~~v---------~~~~~~~~~~~l~~L~~~e~~~L 323 (906)
.+-. +||+||+... ..|+. + ..... .|.+||+|++.... .+.+.....+++++++.++-...
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 2222 6889999532 23322 2 22222 27789998875322 12223446789999999999999
Q ss_pred HHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHHH
Q 002569 324 FREKVGEETIESHHSIPELAQTVANECGGLPLALITIGR 362 (906)
Q Consensus 324 f~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~ 362 (906)
+.+++......-+ +++..-|++.+.|..-.+..+-.
T Consensus 175 l~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 175 LQLRASRRGLHLT---DEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHHH
Confidence 9977644322222 67778888888877655544433
No 81
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=2e-05 Score=89.03 Aligned_cols=178 Identities=19% Similarity=0.184 Sum_probs=106.3
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCC-------------------CCCEEEEEE
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT-------------------DFDSVIWVV 219 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~ 219 (906)
.+++|.+..++.+...+..+.-.+.+.++|+.|+||||+|+.+++... ... .|...+++.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~-c~~~~~~~pCg~C~sC~~i~~~~~~dlieid 94 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN-CKTGVTAEPCNKCENCVAINNNSFIDLIEID 94 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence 358999999999999998763446688999999999999999998762 110 111222222
Q ss_pred eCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHH-hccCcEEEEEccccch--hhhhhcC---CcCCCCcEEEE
Q 002569 220 VSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKT-LSKKKFVLLLDDLWER--VDLKKVG---VPLPKNSAVVF 293 (906)
Q Consensus 220 ~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~--~~~~~~~---~~~~~gs~iiv 293 (906)
......+. +..++...+... ..+++-++|+|++... .....+. .-.+..+.+|+
T Consensus 95 aas~~gvd--------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL 154 (546)
T PRK14957 95 AASRTGVE--------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFIL 154 (546)
T ss_pred cccccCHH--------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEE
Confidence 21111111 111222222211 2356779999999743 2333332 22233566665
Q ss_pred Ee-cccccccC-CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChH-HHHHH
Q 002569 294 TT-RFVDVCGG-MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPL-ALITI 360 (906)
Q Consensus 294 Tt-R~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~ 360 (906)
+| ....+... .+....+++.+++.++....+.+.+...... .-.+....|++.++|.+- |+..+
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~---~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN---SDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44 33333322 2335789999999999988888765443211 125667889999999774 44444
No 82
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.30 E-value=1.6e-06 Score=85.63 Aligned_cols=46 Identities=28% Similarity=0.415 Sum_probs=33.5
Q ss_pred ccchhHHHHHHHHHHh--cCCCCeEEEEEcCCCCcHHHHHHHHHHhcc
Q 002569 161 VVGLQSQLEQVWRCLV--QEPAAGIIGLYGMGGVGKTTLLTQINNKFV 206 (906)
Q Consensus 161 ~vgr~~~~~~l~~~L~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (906)
|+||+++++++...+. .....+.+.|+|.+|+|||+|+++++....
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 7999999999999993 334679999999999999999999999883
No 83
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.30 E-value=0.00014 Score=84.66 Aligned_cols=199 Identities=15% Similarity=0.095 Sum_probs=112.0
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCC---CEEEEEEeCC---cccHHHHHHH
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF---DSVIWVVVSK---DLQLEKIQET 232 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~---~~~~~~l~~~ 232 (906)
++++|++..+..+...+... ....+.|+|++|+||||+|+.+++.. +....+ ...-|+.+.. ..+...+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~-~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP-FPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC-CCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 35899999999888877554 56789999999999999999998876 222222 1223444332 1122222111
Q ss_pred H---------------HHHhCCCC----------------CccccCCHHHHHHHHHHHhccCcEEEEEccccch--hhhh
Q 002569 233 I---------------GKKIGLYT----------------DSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWER--VDLK 279 (906)
Q Consensus 233 i---------------~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~ 279 (906)
+ +...+... +..... ....+..+.+.+..+++.++-|+.|.. ..|.
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence 1 12222110 000111 123466777888888888887766643 3455
Q ss_pred hcCCcCCC---CcEEEE--Eecccccc-cCC-CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCC
Q 002569 280 KVGVPLPK---NSAVVF--TTRFVDVC-GGM-EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGG 352 (906)
Q Consensus 280 ~~~~~~~~---gs~iiv--TtR~~~v~-~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G 352 (906)
.+...+.. ...|++ ||++.... ..+ +....+.+.+++.+|.+.++.+.+....... -.+..+.|.+.+..
T Consensus 311 ~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l---s~eal~~L~~ys~~ 387 (615)
T TIGR02903 311 YIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL---AAGVEELIARYTIE 387 (615)
T ss_pred hhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHCCCc
Confidence 55433333 223444 55543321 111 2234678999999999999999876432111 14455555555554
Q ss_pred ChHHHHHHHHH
Q 002569 353 LPLALITIGRA 363 (906)
Q Consensus 353 ~Plai~~~~~~ 363 (906)
-+-|+..++.+
T Consensus 388 gRraln~L~~~ 398 (615)
T TIGR02903 388 GRKAVNILADV 398 (615)
T ss_pred HHHHHHHHHHH
Confidence 45565555443
No 84
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.30 E-value=7.6e-06 Score=82.26 Aligned_cols=180 Identities=18% Similarity=0.170 Sum_probs=100.0
Q ss_pred Ccccchh-HHHHHHHHHHhcC--CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHH
Q 002569 159 PTVVGLQ-SQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGK 235 (906)
Q Consensus 159 ~~~vgr~-~~~~~l~~~L~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~ 235 (906)
..++|.. +..-.....+... .....+.|+|..|+|||.|.+++++...+. ..-..++|++ ..+....+..
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~-~~~~~v~y~~------~~~f~~~~~~ 81 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ-HPGKRVVYLS------AEEFIREFAD 81 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH-CTTS-EEEEE------HHHHHHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc-cccccceeec------HHHHHHHHHH
Confidence 3345642 2333334444332 234568999999999999999999987321 1223566764 4455555555
Q ss_pred HhCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccch---hhhhhc----CCcC-CCCcEEEEEeccccc-------
Q 002569 236 KIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWER---VDLKKV----GVPL-PKNSAVVFTTRFVDV------- 300 (906)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---~~~~~~----~~~~-~~gs~iivTtR~~~v------- 300 (906)
.+.. ... ..+.+.++ .-=+|++||++.. ..|+.. ...+ ..|.+||+|++....
T Consensus 82 ~~~~-------~~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~ 149 (219)
T PF00308_consen 82 ALRD-------GEI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLP 149 (219)
T ss_dssp HHHT-------TSH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-H
T ss_pred HHHc-------ccc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccCh
Confidence 4421 112 22333333 3347899999653 222221 1111 228899999964322
Q ss_pred --ccCCCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHH
Q 002569 301 --CGGMEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITI 360 (906)
Q Consensus 301 --~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 360 (906)
.+.+.....+++++.+.++-..++.+++......-+ +++..-|++.+.+..-.+..+
T Consensus 150 ~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 150 DLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELP---EEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S----HHHHHHHHHHTTSSHHHHHHH
T ss_pred hhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCc---HHHHHHHHHhhcCCHHHHHHH
Confidence 122234568999999999999999999876553333 677777777776665554433
No 85
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.30 E-value=1.3e-07 Score=95.72 Aligned_cols=87 Identities=16% Similarity=0.103 Sum_probs=42.7
Q ss_pred ccceeeeEEeccccCCCC-----C-CCCCCCCCceEEEeecCC----Ccccccc------ccCCCCceeEEEccCccccc
Q 002569 513 RGWEIVRRLSLMRNSIDN-----L-PTVPTCPHLLTLFLNRNP----LRTITGG------FFQSMSCLTVLKMSDNETLR 576 (906)
Q Consensus 513 ~~~~~lr~L~l~~~~~~~-----l-~~~~~~~~Lr~L~l~~~~----l~~~~~~------~~~~l~~L~~L~Ls~~~~i~ 576 (906)
.....+..+++++|.+.. + +.+.+-+.|+..++++-. ...+|+. .+..+++|++||||+|..-.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 344567777777776642 1 123444566666666532 1122221 13345566666666662111
Q ss_pred ccc----cccccccccceeecccCccc
Q 002569 577 QLP----MGISKLVSLQLLDISKTSVV 599 (906)
Q Consensus 577 ~lp----~~i~~L~~L~~L~L~~~~i~ 599 (906)
.-+ .-+..+..|+.|.|.+|.+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 112 22334555666666666544
No 86
>PTZ00202 tuzin; Provisional
Probab=98.28 E-value=1.3e-05 Score=85.06 Aligned_cols=159 Identities=16% Similarity=0.135 Sum_probs=99.7
Q ss_pred CCCCcccchhHHHHHHHHHHhcC--CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHH
Q 002569 156 PTEPTVVGLQSQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETI 233 (906)
Q Consensus 156 ~~~~~~vgr~~~~~~l~~~L~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i 233 (906)
+..+.|+||+.+.+++...|.+. ...+++.|.|++|+|||||++.+.... ++ .+++.-.. +..++++.+
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-----~~--~qL~vNpr--g~eElLr~L 329 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-----GM--PAVFVDVR--GTEDTLRSV 329 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-----Cc--eEEEECCC--CHHHHHHHH
Confidence 34567999999999999998642 245699999999999999999999776 11 23333333 679999999
Q ss_pred HHHhCCCCCccccCCHHHHHHHHHHHh-----c-cCcEEEEEccccchhhhhhc----CCcCCC--CcEEEEEecccccc
Q 002569 234 GKKIGLYTDSWKDRSLEEKAQDIFKTL-----S-KKKFVLLLDDLWERVDLKKV----GVPLPK--NSAVVFTTRFVDVC 301 (906)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~-~kr~LlVlDdv~~~~~~~~~----~~~~~~--gs~iivTtR~~~v~ 301 (906)
+.++|.+.. ....++...|.+.+ . +++.+||+- +.+-..+..+ .....+ -|.|++----+...
T Consensus 330 L~ALGV~p~----~~k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~v~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 330 VKALGVPNV----EACGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHcCCCCc----ccHHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcc
Confidence 999998432 22233333333332 2 456666653 2221121111 111112 46677655433332
Q ss_pred cC---CCccceEEeccCChHhHHHHHHHHh
Q 002569 302 GG---MEARRKFKVECLSDEDAWELFREKV 328 (906)
Q Consensus 302 ~~---~~~~~~~~l~~L~~~e~~~Lf~~~a 328 (906)
-. ...-..|.+++++.++|..+..+..
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 11 1233568899999999999887764
No 87
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=2e-05 Score=88.38 Aligned_cols=191 Identities=16% Similarity=0.165 Sum_probs=108.0
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCE-EEEEEeCCcccHHHHHHHHHHHh
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDS-VIWVVVSKDLQLEKIQETIGKKI 237 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~l~~~i~~~l 237 (906)
.+++|-+..+..+...+..+.-.+.+.++|+.|+||||+|+.+++... ....... --+..+. ....-..+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln-c~~~~~~~~~~~~C~----~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN-CSALITENTTIKTCE----QCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CccccccCcCcCCCC----CChHHHHHhcCC
Confidence 357999999998888777763456899999999999999999998872 1111100 0000000 000111111100
Q ss_pred CCCC---CccccCCHHHHHHHHHHH----hccCcEEEEEccccch--hhhhhcCCcC---CCCcEEEE-EecccccccCC
Q 002569 238 GLYT---DSWKDRSLEEKAQDIFKT----LSKKKFVLLLDDLWER--VDLKKVGVPL---PKNSAVVF-TTRFVDVCGGM 304 (906)
Q Consensus 238 ~~~~---~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~--~~~~~~~~~~---~~gs~iiv-TtR~~~v~~~~ 304 (906)
.... +.......+++...+... +.+++-++|+|+++.. ..+..+...+ +..+.+|+ ||+...+...+
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH
Confidence 0000 000112223332222211 2356779999999853 3344443222 23556554 44444443322
Q ss_pred -CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHH
Q 002569 305 -EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLAL 357 (906)
Q Consensus 305 -~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai 357 (906)
.....+++.+++.++....+.+.+....... -.+....|++.++|.+--+
T Consensus 176 ~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i---e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 176 ISRCQRYDLRRLSFEEIFKLLEYITKQENLKT---DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HhcceEEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 2346789999999999999998886543221 1566788999999987544
No 88
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=2.6e-05 Score=83.83 Aligned_cols=194 Identities=11% Similarity=0.089 Sum_probs=110.9
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCC-CCCCEEEEEEeCCcccHHHHHHHHHHHh
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP-TDFDSVIWVVVSKDLQLEKIQETIGKKI 237 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~~~~~~l~~~i~~~l 237 (906)
..++|.++..+.+...+..+.-...+.|+|+.|+||||+|+.+........ ..+... .....+......+.+...-
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCC
Confidence 458999999999999998773456799999999999999999998872100 001111 0011111112233332221
Q ss_pred C-------CCCCc-----cccCCHHHHHHHHHHHhc-----cCcEEEEEccccch--hhhhhc---CCcCCCCcEEE-EE
Q 002569 238 G-------LYTDS-----WKDRSLEEKAQDIFKTLS-----KKKFVLLLDDLWER--VDLKKV---GVPLPKNSAVV-FT 294 (906)
Q Consensus 238 ~-------~~~~~-----~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~--~~~~~~---~~~~~~gs~ii-vT 294 (906)
. .+.+. ......++. +.+.+++. +++-++|+|++... .....+ ..-.+.+..+| +|
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 0 00000 011223333 34444443 46679999999753 222222 22222344544 44
Q ss_pred ecccccccCC-CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHH
Q 002569 295 TRFVDVCGGM-EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIG 361 (906)
Q Consensus 295 tR~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 361 (906)
++...+.... +....+++.+++.++..+++.+...... .-.+....+++.++|.|..+..+.
T Consensus 179 ~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 179 HSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4433332211 2346899999999999999987432111 124567889999999998765544
No 89
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=5e-08 Score=96.22 Aligned_cols=81 Identities=23% Similarity=0.194 Sum_probs=46.0
Q ss_pred ceeEEEccCcccccc--cccccccccccceeecccCccc-ccChhhhCCCCCcEecccccccccccCh-hhhcCCCCCce
Q 002569 563 CLTVLKMSDNETLRQ--LPMGISKLVSLQLLDISKTSVV-ELPEELKALVNLKCLNLDWAKELVVVPQ-QLLSNFSRLRV 638 (906)
Q Consensus 563 ~L~~L~Ls~~~~i~~--lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~ 638 (906)
.|++||||+. .|+. +-.-+..+.+|+.|.|.++++. .+-..+.+-.+|+.|+++.|..++.... -++.+|+.|..
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4677777766 5542 3333455566666666666555 3444556666666666666654444322 22455666666
Q ss_pred eecccc
Q 002569 639 LRMFAI 644 (906)
Q Consensus 639 L~l~~~ 644 (906)
|+++.|
T Consensus 265 LNlsWc 270 (419)
T KOG2120|consen 265 LNLSWC 270 (419)
T ss_pred cCchHh
Confidence 666655
No 90
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=1.5e-05 Score=90.92 Aligned_cols=189 Identities=13% Similarity=0.126 Sum_probs=107.0
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHH--
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKK-- 236 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~-- 236 (906)
.+++|.+..++.|..++..+.-.+.+.++|+.|+||||+|+.+.+.+. ...... +..+ .....-+.+...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-C~~~~~---~~pC----g~C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-CENAQH---GEPC----GVCQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccCCCC---CCCC----cccHHHHHHhccCc
Confidence 358999999999999998763356789999999999999999988751 111110 0000 000000000000
Q ss_pred ---hCCCCCccccCCHHHHHHHHHH---H-hccCcEEEEEccccchh--hhhhcCCc---CCCCcEEEEEeccc-ccccC
Q 002569 237 ---IGLYTDSWKDRSLEEKAQDIFK---T-LSKKKFVLLLDDLWERV--DLKKVGVP---LPKNSAVVFTTRFV-DVCGG 303 (906)
Q Consensus 237 ---l~~~~~~~~~~~~~~~~~~l~~---~-l~~kr~LlVlDdv~~~~--~~~~~~~~---~~~gs~iivTtR~~-~v~~~ 303 (906)
+.+.. ......+.+.+.+.. . ..+++-++|||++.... ....+... .+..+++|++|.+. .+...
T Consensus 88 ~DvlEida--As~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~T 165 (709)
T PRK08691 88 VDLLEIDA--ASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVT 165 (709)
T ss_pred cceEEEec--cccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchH
Confidence 00000 011122222222211 0 23566789999997532 22222222 23366777666533 22211
Q ss_pred -CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHH
Q 002569 304 -MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITI 360 (906)
Q Consensus 304 -~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 360 (906)
.+....+.+.+++.++....+.+.+....... -.+....|++.++|.+.-+..+
T Consensus 166 IrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i---d~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 166 VLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY---EPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred HHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHhCCCHHHHHHH
Confidence 12345688899999999999988876544222 2567899999999998554433
No 91
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=5.3e-05 Score=81.98 Aligned_cols=193 Identities=11% Similarity=0.038 Sum_probs=109.3
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEE---EEeCCcccHHHHHHHHHH
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIW---VVVSKDLQLEKIQETIGK 235 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w---v~~s~~~~~~~l~~~i~~ 235 (906)
.+++|.+..++.+.+.+..+.-...+.++|+.|+||+|+|..+....- .......... ...-........-+.|..
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Ll-c~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~ 97 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLL-ATPPPGGDGAVPPPTSLAIDPDHPVARRIAA 97 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHh-CCCCCCCCccccccccccCCCCChHHHHHHc
Confidence 468999999999999998873456799999999999999999888762 1111100000 000000000011111111
Q ss_pred HhCCCC---------Cc----cccCCHHHHHHHHHHHhc-----cCcEEEEEccccch--hhhhhc---CCcCCCCcEEE
Q 002569 236 KIGLYT---------DS----WKDRSLEEKAQDIFKTLS-----KKKFVLLLDDLWER--VDLKKV---GVPLPKNSAVV 292 (906)
Q Consensus 236 ~l~~~~---------~~----~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~--~~~~~~---~~~~~~gs~ii 292 (906)
. ..+. +. ......++ ++.+.+.+. +++.++|+||+... .....+ ....+.++.+|
T Consensus 98 ~-~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~I 175 (365)
T PRK07471 98 G-AHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFL 175 (365)
T ss_pred c-CCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 1 0000 00 01112333 334444432 46679999999643 222222 22223366677
Q ss_pred EEecccc-cccC-CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHH
Q 002569 293 FTTRFVD-VCGG-MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIG 361 (906)
Q Consensus 293 vTtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 361 (906)
++|.+.. +... .+....+.+.+++.++..+++.+...... .+....+++.++|.|..+..+.
T Consensus 176 L~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 176 LVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHHh
Confidence 7666543 3211 23356899999999999999987643221 2233788999999998765543
No 92
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=4.6e-08 Score=96.48 Aligned_cols=57 Identities=25% Similarity=0.211 Sum_probs=29.5
Q ss_pred ccceeecccCccc--ccChhhhCCCCCcEecccccccccccChhhhcCCCCCceeecccc
Q 002569 587 SLQLLDISKTSVV--ELPEELKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFAI 644 (906)
Q Consensus 587 ~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 644 (906)
.||+|||+.+.|+ .+-.-+..+.+|+.|.+.++..-..+-.. +.+-.+|+.|+++.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMC 244 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccc
Confidence 4667777766555 44444555566666666555322222222 444455555555543
No 93
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=2.2e-05 Score=90.06 Aligned_cols=192 Identities=16% Similarity=0.122 Sum_probs=108.7
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG 238 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 238 (906)
.++||.+..++.|...+..+.-...+.++|..|+||||+|+.+++.+. ....+ ....+.....-+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~-c~~~~-------~~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN-CETGI-------TATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh-hccCC-------CCCCCCCCHHHHHHHcCCC
Confidence 358999999999999988763345578999999999999999988772 11100 0011111122222221100
Q ss_pred CCC---CccccCCHHHHH---HHHHHH-hccCcEEEEEccccch--hhhhhcC---CcCCCCcEEEEEecc-cccccC-C
Q 002569 239 LYT---DSWKDRSLEEKA---QDIFKT-LSKKKFVLLLDDLWER--VDLKKVG---VPLPKNSAVVFTTRF-VDVCGG-M 304 (906)
Q Consensus 239 ~~~---~~~~~~~~~~~~---~~l~~~-l~~kr~LlVlDdv~~~--~~~~~~~---~~~~~gs~iivTtR~-~~v~~~-~ 304 (906)
.+- +.......++.. ..+... ..+++-++|||++... .....+. .-.+...++|++|.+ ..+... .
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~ 167 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHH
Confidence 000 000011222222 221111 2456779999999753 2333332 222335555555544 333321 2
Q ss_pred CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHH
Q 002569 305 EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIG 361 (906)
Q Consensus 305 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 361 (906)
+....|.+.+++.++....+.+.+...... .-.+....|++.++|.+--+..+.
T Consensus 168 SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~---~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 168 SRCLQFHLKALDVEQIRQQLEHILQAEQIP---FEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred hhheEeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 335789999999999999998876433211 125667889999999886554443
No 94
>PF14516 AAA_35: AAA-like domain
Probab=98.21 E-value=0.00076 Score=72.64 Aligned_cols=198 Identities=15% Similarity=0.202 Sum_probs=120.7
Q ss_pred CCcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCc-----ccHHHHHH-
Q 002569 158 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKD-----LQLEKIQE- 231 (906)
Q Consensus 158 ~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-----~~~~~l~~- 231 (906)
.+..|.|...-+++.+.+.+. ...+.|.|+-.+|||||...+.+... +..+ .++++++... .+....++
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~--G~~~~I~apRq~GKTSll~~l~~~l~--~~~~-~~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP--GSYIRIKAPRQMGKTSLLLRLLERLQ--QQGY-RCVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC--CCEEEEECcccCCHHHHHHHHHHHHH--HCCC-EEEEEEeecCCCcccCCHHHHHHH
Confidence 355688987778888888763 47899999999999999999998872 2333 5567776542 23454444
Q ss_pred ---HHHHHhCCCCCc---c--ccCCHHHHHHHHHHHh-c--cCcEEEEEccccchh-------h-------hhhcCCcCC
Q 002569 232 ---TIGKKIGLYTDS---W--KDRSLEEKAQDIFKTL-S--KKKFVLLLDDLWERV-------D-------LKKVGVPLP 286 (906)
Q Consensus 232 ---~i~~~l~~~~~~---~--~~~~~~~~~~~l~~~l-~--~kr~LlVlDdv~~~~-------~-------~~~~~~~~~ 286 (906)
.+..++++...- + ...+.......+.+.+ . +++.+|+||+|+... + |..-....+
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 444555543210 0 0112223333344432 2 589999999996431 1 222111111
Q ss_pred C-CcEEEEEecccc---ccc----CCCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHH
Q 002569 287 K-NSAVVFTTRFVD---VCG----GMEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALI 358 (906)
Q Consensus 287 ~-gs~iivTtR~~~---v~~----~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 358 (906)
. .+-.++...+.. ... .+.....++|++++.+|...|..+.-..-. .+..++|...+||+|.-+.
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHHHH
Confidence 1 221222221111 111 122345789999999999999887633222 3448999999999999999
Q ss_pred HHHHHhhcC
Q 002569 359 TIGRAMAYK 367 (906)
Q Consensus 359 ~~~~~l~~~ 367 (906)
.++..+..+
T Consensus 238 ~~~~~l~~~ 246 (331)
T PF14516_consen 238 KACYLLVEE 246 (331)
T ss_pred HHHHHHHHc
Confidence 999999763
No 95
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.21 E-value=2.4e-06 Score=90.29 Aligned_cols=100 Identities=17% Similarity=0.173 Sum_probs=67.4
Q ss_pred HHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcc--cHHHHHHHHHHHhCCCCCccccC
Q 002569 170 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDL--QLEKIQETIGKKIGLYTDSWKDR 247 (906)
Q Consensus 170 ~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~l~~~i~~~l~~~~~~~~~~ 247 (906)
++++++..=+.-...+|+|++|+||||||+.+|+... ..+|+.++||.+.+.. ++.++++.+...+-... .+.
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~--~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st---~d~ 232 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSIT--TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST---FDE 232 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHH--hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC---CCC
Confidence 4455554423557789999999999999999999983 3489999999998887 78888888873221111 111
Q ss_pred CHHH-------HHHHHHHH-hccCcEEEEEccccc
Q 002569 248 SLEE-------KAQDIFKT-LSKKKFVLLLDDLWE 274 (906)
Q Consensus 248 ~~~~-------~~~~l~~~-l~~kr~LlVlDdv~~ 274 (906)
+... ..+..... -.+++++|++|++..
T Consensus 233 ~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 233 PAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 1111 11111121 257999999999954
No 96
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=4.6e-05 Score=83.17 Aligned_cols=183 Identities=13% Similarity=0.045 Sum_probs=102.5
Q ss_pred cccchhHHHHHHHHHHhcCC---------CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHH
Q 002569 160 TVVGLQSQLEQVWRCLVQEP---------AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQ 230 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~ 230 (906)
+++|-+..++.+.+++..+. -.+.+.++|+.|+||||+|+.++.... ....- +.++ +.-..-
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~-c~~~~----~~~C----g~C~~C 76 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQ-CTDPD----EPGC----GECRAC 76 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC-CCCCC----CCCC----CCCHHH
Confidence 58999999999999987652 356789999999999999999988651 11100 0000 000000
Q ss_pred HHHHHHhCCC----CCccccCCHHHHHHHHHHHh-----ccCcEEEEEccccch--hh---hhhcCCcCCCCcEEEEEec
Q 002569 231 ETIGKKIGLY----TDSWKDRSLEEKAQDIFKTL-----SKKKFVLLLDDLWER--VD---LKKVGVPLPKNSAVVFTTR 296 (906)
Q Consensus 231 ~~i~~~l~~~----~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~---~~~~~~~~~~gs~iivTtR 296 (906)
+.+...-... .........+++. .+.+.. .+++-++|+|++... .. +-+.....+.+..+|++|.
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~ 155 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAP 155 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEEC
Confidence 1110000000 0000111222222 222222 245568889999753 22 2222222234666666665
Q ss_pred cc-ccccC-CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHH
Q 002569 297 FV-DVCGG-MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITI 360 (906)
Q Consensus 297 ~~-~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 360 (906)
+. .+... .+....+.+.+++.++..+.+.+..+.. .+.+..++..++|.|.....+
T Consensus 156 ~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~~--------~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 156 SPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGVD--------PETARRAARASQGHIGRARRL 213 (394)
T ss_pred ChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCCC--------HHHHHHHHHHcCCCHHHHHHH
Confidence 43 33322 1234688999999999999887543211 456788999999999766544
No 97
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=3.1e-05 Score=88.68 Aligned_cols=194 Identities=15% Similarity=0.165 Sum_probs=108.7
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCC--CEEEEEEeCCcccHHHHHHHHHHH
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF--DSVIWVVVSKDLQLEKIQETIGKK 236 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f--~~~~wv~~s~~~~~~~l~~~i~~~ 236 (906)
.+++|-+..++.|.+++..+.-...+.++|+.|+||||+|+.+.+.+. ..... ...-. ..++....-+.|...
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln-C~~~~~~~~~~~----~pCg~C~~C~~i~~g 90 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLN-CQGPDGQGGITA----TPCGVCQACRDIDSG 90 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCcccccCCCC----CCCCccHHHHHHHcC
Confidence 358999999999999988773446779999999999999999987762 11100 00000 011111111122110
Q ss_pred hCCC---CCccccCCHHHHHHHHHHH----hccCcEEEEEccccch--hhhhhcCCcC---CCCcEEEEEec-cccccc-
Q 002569 237 IGLY---TDSWKDRSLEEKAQDIFKT----LSKKKFVLLLDDLWER--VDLKKVGVPL---PKNSAVVFTTR-FVDVCG- 302 (906)
Q Consensus 237 l~~~---~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~--~~~~~~~~~~---~~gs~iivTtR-~~~v~~- 302 (906)
-... -+.......++..+.+... ..++.-++|||+|+.. ..+..+...+ +...++|++|. ...+..
T Consensus 91 ~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 91 RFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHH
Confidence 0000 0000112222222222111 1234568999999753 3333333322 33566665553 333321
Q ss_pred CCCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHH
Q 002569 303 GMEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITI 360 (906)
Q Consensus 303 ~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 360 (906)
..+....+++++++.++....+.+.+.......+ .+....|++.++|.+--+..+
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 1233578999999999999999887755432222 567889999999988655443
No 98
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.7e-05 Score=88.07 Aligned_cols=178 Identities=15% Similarity=0.127 Sum_probs=105.6
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCC-------------------CCEEEEEE
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD-------------------FDSVIWVV 219 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~ 219 (906)
.++||-+..++.|.+++..+.-...+.++|+.|+||||+|+.+++... .... |.-++.++
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN-CEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc-CCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 358999999999999998763445689999999999999999998772 1111 11122222
Q ss_pred eCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccch--hhhhhc---CCcCCCCcEEEEE
Q 002569 220 VSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWER--VDLKKV---GVPLPKNSAVVFT 294 (906)
Q Consensus 220 ~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~---~~~~~~gs~iivT 294 (906)
.+....+.++ +++++.+.. .-..++.-++|+|+|... .....+ ....+..+++|++
T Consensus 95 aas~~~v~~i-R~l~~~~~~------------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 95 AASRTKVEDT-RELLDNIPY------------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred ccccCCHHHH-HHHHHHHhh------------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 2211111111 112221110 011345668999999753 233322 2223346777765
Q ss_pred ecc-cccccC-CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHH
Q 002569 295 TRF-VDVCGG-MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALIT 359 (906)
Q Consensus 295 tR~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~ 359 (906)
|.+ ..+... .+....+++.+++.++....+.+.+....... -.+....|++.++|.+.-+..
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~---~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF---ENAALDLLARAANGSVRDALS 219 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHH
Confidence 543 232211 12345788999999998888777765433211 245678899999998865543
No 99
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.19 E-value=5.9e-05 Score=83.05 Aligned_cols=179 Identities=15% Similarity=0.163 Sum_probs=106.8
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccC-C------------------CCCCEEEEEE
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN-P------------------TDFDSVIWVV 219 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~------------------~~f~~~~wv~ 219 (906)
.+++|.+..++.+.+++..+.-.+.+.++|+.|+||||+|+.+....... . .+++. +++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 35799999999999999876345678999999999999999998876210 0 02221 2222
Q ss_pred eCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHH-hccCcEEEEEccccch--hhhhhcC---CcCCCCcEEEE
Q 002569 220 VSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKT-LSKKKFVLLLDDLWER--VDLKKVG---VPLPKNSAVVF 293 (906)
Q Consensus 220 ~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~--~~~~~~~---~~~~~gs~iiv 293 (906)
.+...... -.+++... +... ..+++-++|+|++... .....+. ...+..+.+|+
T Consensus 93 ~~~~~~~~-~~~~l~~~-------------------~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 93 AASNNGVD-DIREILDN-------------------VKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred ccccCCHH-HHHHHHHH-------------------HhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 21111111 11111111 1111 2245568999998643 2222222 22233667666
Q ss_pred Eecccc-cccC-CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHH
Q 002569 294 TTRFVD-VCGG-MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIG 361 (906)
Q Consensus 294 TtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 361 (906)
+|.+.. +... ......+++.++++++....+...+.......+ .+.+..+++.++|.|..+....
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHHH
Confidence 665433 2111 123457889999999999999887754332112 5778889999999997665443
No 100
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.19 E-value=3.4e-08 Score=108.48 Aligned_cols=180 Identities=20% Similarity=0.235 Sum_probs=85.8
Q ss_pred CCCcccceeeeEEeccccCCCCCCCCCCCC-CceEEEeecCC--Cccc----ccccc--CCCCceeEEEccCcccccccc
Q 002569 509 PADVRGWEIVRRLSLMRNSIDNLPTVPTCP-HLLTLFLNRNP--LRTI----TGGFF--QSMSCLTVLKMSDNETLRQLP 579 (906)
Q Consensus 509 ~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~-~Lr~L~l~~~~--l~~~----~~~~~--~~l~~L~~L~Ls~~~~i~~lp 579 (906)
|-++..+..+|+|-+.+.++.....+..+. .|+.|..++.- +..+ ..++- .....|.+.+.++| .+..+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L~~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYN-RLVLMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchh-hHHhHH
Confidence 456667788888888887765433221111 12333322210 0000 00000 01223555555555 555555
Q ss_pred cccccccccceeecccCcccccChhhhCCCCCcEecccccccccccChhhhcCCCCCceeecccccccCCCCCCCccccc
Q 002569 580 MGISKLVSLQLLDISKTSVVELPEELKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFAIGVRSPYGLSSSWHEN 659 (906)
Q Consensus 580 ~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 659 (906)
+++.-++.|+.|||++|++...- .+..|++|++|||++| .+..+|.--...+. |+.|.+.+|.+.
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l~------------ 245 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNALT------------ 245 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecccHHH------------
Confidence 55555666666666666655553 5555666666666665 45555542122222 666666554221
Q ss_pred cHHhhcCCCCccEEEEEEechhhHHHHhhcccccccceeeEecccC
Q 002569 660 VAEELLGLKYLEVLEITFRSFKAYQTFLSSQKLRSCTQALLLDEFD 705 (906)
Q Consensus 660 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 705 (906)
.+.++.+|.+|+.||++.|-+.+...+.. .-.+..|+.|+|.+|+
T Consensus 246 tL~gie~LksL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 246 TLRGIENLKSLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhHHhhhhhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcCCc
Confidence 33344555555566666555444332111 1112345555555554
No 101
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=5.7e-05 Score=84.55 Aligned_cols=178 Identities=19% Similarity=0.182 Sum_probs=104.5
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCC--C-----------------CEEEEEE
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD--F-----------------DSVIWVV 219 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--f-----------------~~~~wv~ 219 (906)
.+++|.+.....+...+..+.-.+.+.++|++|+||||+|+.+++... .... + ..+..+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~-~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN-CENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-cccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 458999988888888877662335689999999999999999988762 1110 0 0111222
Q ss_pred eCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHH-----hccCcEEEEEccccch--hhhhhcCCcC---CCCc
Q 002569 220 VSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKT-----LSKKKFVLLLDDLWER--VDLKKVGVPL---PKNS 289 (906)
Q Consensus 220 ~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~~~~---~~gs 289 (906)
.+... ..++.. .+.+. ..+++-++|+|++... .....+...+ +...
T Consensus 93 aa~~~-----------------------gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~v 148 (472)
T PRK14962 93 AASNR-----------------------GIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHV 148 (472)
T ss_pred CcccC-----------------------CHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcE
Confidence 11111 112111 22221 2345679999999643 2233332222 2244
Q ss_pred EEEEEecc-cccccC-CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCC-hHHHHHHHHHh
Q 002569 290 AVVFTTRF-VDVCGG-MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGL-PLALITIGRAM 364 (906)
Q Consensus 290 ~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~-Plai~~~~~~l 364 (906)
.+|++|.+ ..+... ......+++.+++.++....+.+.+......-+ .+....|++.++|. +.|+..+-.+.
T Consensus 149 v~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 149 VFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44444433 333221 233467899999999999999888754332222 56778899988765 56666665543
No 102
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=3.6e-05 Score=87.01 Aligned_cols=193 Identities=14% Similarity=0.157 Sum_probs=106.8
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG 238 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 238 (906)
.+++|.+..++.+.+++..+.-.+.+.++|+.|+||||+|+.+++... ... |... ..++.....+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~-C~~------~~~~-~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN-CLN------PKDG-DCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CCC------CCCC-CCCcccHHHHHHHcCCC
Confidence 358999999999999987763456799999999999999999998872 111 1110 11111112222211110
Q ss_pred CCC---CccccCCHHHHH---HHHHHH-hccCcEEEEEccccch--hhhhhcCCc---CCCCcEEEEEe-cccccccC-C
Q 002569 239 LYT---DSWKDRSLEEKA---QDIFKT-LSKKKFVLLLDDLWER--VDLKKVGVP---LPKNSAVVFTT-RFVDVCGG-M 304 (906)
Q Consensus 239 ~~~---~~~~~~~~~~~~---~~l~~~-l~~kr~LlVlDdv~~~--~~~~~~~~~---~~~gs~iivTt-R~~~v~~~-~ 304 (906)
..- +.......++.. ..+... ..+++-++|+|++... ..+..+... .+....+|++| ....+... .
T Consensus 88 ~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~ 167 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTII 167 (605)
T ss_pred CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHH
Confidence 000 000011222221 111111 1234457999999653 333333222 22355555555 33333211 2
Q ss_pred CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChH-HHHHHHH
Q 002569 305 EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPL-ALITIGR 362 (906)
Q Consensus 305 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~~~ 362 (906)
.....+++.++++++....+.+.+......-+ .+.+..+++.++|.+. |+..+-.
T Consensus 168 SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 168 SRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 23468899999999999998887654331112 5668889999999775 4444333
No 103
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.14 E-value=2e-07 Score=104.27 Aligned_cols=105 Identities=28% Similarity=0.374 Sum_probs=47.5
Q ss_pred CCCCCCceEEEeecCCCccccccccCCCCceeEEEccCcccccccccccccccccceeecccCcccccChhhhCCCCCcE
Q 002569 534 VPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPMGISKLVSLQLLDISKTSVVELPEELKALVNLKC 613 (906)
Q Consensus 534 ~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 613 (906)
+..+++|..|++.+|.+..+... +..+++|++|+|++| .|+.+. ++..+..|+.|++++|.|+.++ .+..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccc-hhhhhcchheecccc-cccccc-chhhccchhhheeccCcchhcc-CCccchhhhc
Confidence 34444555555555544444332 334455555555555 444443 4444444555555555444442 2333445555
Q ss_pred ecccccccccccCh-hhhcCCCCCceeecccc
Q 002569 614 LNLDWAKELVVVPQ-QLLSNFSRLRVLRMFAI 644 (906)
Q Consensus 614 L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~ 644 (906)
+++++| .+..+.. . ...+.+|+.+.+.+|
T Consensus 167 l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 167 LDLSYN-RIVDIENDE-LSELISLEELDLGGN 196 (414)
T ss_pred ccCCcc-hhhhhhhhh-hhhccchHHHhccCC
Confidence 555554 2333332 1 134444444444443
No 104
>PLN03150 hypothetical protein; Provisional
Probab=98.14 E-value=3.5e-06 Score=98.74 Aligned_cols=110 Identities=23% Similarity=0.372 Sum_probs=90.8
Q ss_pred eeeEEeccccCCCC-CC-CCCCCCCceEEEeecCCCccccccccCCCCceeEEEccCcccccccccccccccccceeecc
Q 002569 517 IVRRLSLMRNSIDN-LP-TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPMGISKLVSLQLLDIS 594 (906)
Q Consensus 517 ~lr~L~l~~~~~~~-l~-~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~ 594 (906)
.++.|++.++.+.. +| .+..+++|+.|+|++|.+....+..++.+++|++|+|++|.....+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999988863 44 56889999999999999886555568999999999999994334789999999999999999
Q ss_pred cCccc-ccChhhhCC-CCCcEecccccccccccC
Q 002569 595 KTSVV-ELPEELKAL-VNLKCLNLDWAKELVVVP 626 (906)
Q Consensus 595 ~~~i~-~lp~~i~~L-~~L~~L~l~~~~~l~~lp 626 (906)
+|.+. .+|..++.+ .++..+++.+|..+-..|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99998 889988764 577889988885444333
No 105
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.13 E-value=2.3e-05 Score=80.02 Aligned_cols=166 Identities=13% Similarity=0.113 Sum_probs=95.0
Q ss_pred cchhHHH-HHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCC
Q 002569 162 VGLQSQL-EQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLY 240 (906)
Q Consensus 162 vgr~~~~-~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~ 240 (906)
.|..... ..+.++.......+.+.|+|..|+|||+||+.+++... ... ....+++..... .. +
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~-~~~~~i~~~~~~------~~----~--- 85 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS--YGG-RNARYLDAASPL------LA----F--- 85 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEehHHhH------HH----H---
Confidence 3544333 44444444333557889999999999999999998762 122 234555443211 00 0
Q ss_pred CCccccCCHHHHHHHHHHHhccCcEEEEEccccchh--hhhhcCCcC----CCCc-EEEEEeccccccc--------CCC
Q 002569 241 TDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWERV--DLKKVGVPL----PKNS-AVVFTTRFVDVCG--------GME 305 (906)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~~~~~~~~~----~~gs-~iivTtR~~~v~~--------~~~ 305 (906)
... ...-+||+||+.... ....+...+ ..+. .||+|++...... .+.
T Consensus 86 -----------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~ 147 (227)
T PRK08903 86 -----------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLG 147 (227)
T ss_pred -----------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHh
Confidence 011 223478899996431 111221111 1244 3666666433221 122
Q ss_pred ccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHHHHh
Q 002569 306 ARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIGRAM 364 (906)
Q Consensus 306 ~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l 364 (906)
....++++++++++-..++.+.+......-+ ++....+++.+.|++..+..+...+
T Consensus 148 ~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 148 WGLVYELKPLSDADKIAALKAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred cCeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2468899999998877777765433222222 6788888889999998887666554
No 106
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.13 E-value=3.2e-07 Score=102.66 Aligned_cols=126 Identities=24% Similarity=0.420 Sum_probs=100.5
Q ss_pred cccceeeeEEeccccCCCCCCC-CCCCCCceEEEeecCCCccccccccCCCCceeEEEccCcccccccccccccccccce
Q 002569 512 VRGWEIVRRLSLMRNSIDNLPT-VPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPMGISKLVSLQL 590 (906)
Q Consensus 512 ~~~~~~lr~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~ 590 (906)
+..+.++..+++.+|.+..+.. +..+++|++|++++|.|+++.. +..++.|+.|++++| .|..++ .+..++.|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccC-cchhcc-CCccchhhhc
Confidence 4567789999999999999988 8889999999999999988876 678888999999999 888887 6777999999
Q ss_pred eecccCcccccChh-hhCCCCCcEecccccccccccChhhhcCCCCCceeecccc
Q 002569 591 LDISKTSVVELPEE-LKALVNLKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFAI 644 (906)
Q Consensus 591 L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 644 (906)
+++++|.+..++.. ...+.+|+.+++.+| .+..+.. +..+..+..+++..+
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n-~i~~i~~--~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGN-SIREIEG--LDLLKKLVLLSLLDN 218 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCC-chhcccc--hHHHHHHHHhhcccc
Confidence 99999999988654 688999999999988 3444332 333444444454443
No 107
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=6.9e-05 Score=85.46 Aligned_cols=172 Identities=15% Similarity=0.134 Sum_probs=103.6
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCC-------------------CCCEEEEEE
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT-------------------DFDSVIWVV 219 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~ 219 (906)
.+++|.+..++.+..++..+.-.+.+.++|+.|+||||+|+.+..... ... .|...+++.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN-CETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 358999999999999988763445678999999999999999988762 111 011112222
Q ss_pred eCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHH----hccCcEEEEEccccchh--hhhhcC---CcCCCCcE
Q 002569 220 VSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKT----LSKKKFVLLLDDLWERV--DLKKVG---VPLPKNSA 290 (906)
Q Consensus 220 ~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~--~~~~~~---~~~~~gs~ 290 (906)
.+. ....+++...+... ..+++-++|+|++.... ....+. ...+..+.
T Consensus 95 ~~~-----------------------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 95 AAS-----------------------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred ccc-----------------------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 111 11222222111111 13566799999997542 222222 22233666
Q ss_pred EEEEecc-cccccC-CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHH
Q 002569 291 VVFTTRF-VDVCGG-MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLAL 357 (906)
Q Consensus 291 iivTtR~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai 357 (906)
+|++|.+ ..+... .+....+++.+++.++....+.+.+...... .-.+....|++.++|.+--+
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~---~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP---FDATALQLLARAAAGSMRDA 217 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 6665543 333211 1224678999999999999888876543311 12566788999999988533
No 108
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.09 E-value=1.1e-05 Score=88.58 Aligned_cols=168 Identities=18% Similarity=0.229 Sum_probs=98.4
Q ss_pred CcccchhHHHHHHHHHHhc---C---------CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccH
Q 002569 159 PTVVGLQSQLEQVWRCLVQ---E---------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQL 226 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 226 (906)
.++.|++..++++.+.+.. . ...+.+.++|++|+|||++|+++++.. ...| +.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~---- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----
Confidence 3589999999999887632 1 135669999999999999999999987 2333 22211
Q ss_pred HHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHh-ccCcEEEEEccccchh----------------hhhhcCC---cC-
Q 002569 227 EKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTL-SKKKFVLLLDDLWERV----------------DLKKVGV---PL- 285 (906)
Q Consensus 227 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------------~~~~~~~---~~- 285 (906)
..+.... .+ ........+.+.. ...+.+|+|||++... .+..+.. .+
T Consensus 190 ~~l~~~~---~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 SELVRKY---IG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHHHHHh---hh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111110 00 1111222222222 3467899999986421 1111111 11
Q ss_pred -CCCcEEEEEecccccc-----cCCCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCCh
Q 002569 286 -PKNSAVVFTTRFVDVC-----GGMEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLP 354 (906)
Q Consensus 286 -~~gs~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~P 354 (906)
..+.+||.||...... +...-...+.++..+.++..++|..++......... ....+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~----~~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV----DLEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC----CHHHHHHHcCCCC
Confidence 1266788888754321 111224578999999999999999887554322111 2466777887764
No 109
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=1.1e-06 Score=86.92 Aligned_cols=208 Identities=13% Similarity=0.089 Sum_probs=95.5
Q ss_pred CCCceeEEEccCcccccc---cccccccccccceeecccCcccccChhh-hCCCCCcEecccccccccccChhhhcCCCC
Q 002569 560 SMSCLTVLKMSDNETLRQ---LPMGISKLVSLQLLDISKTSVVELPEEL-KALVNLKCLNLDWAKELVVVPQQLLSNFSR 635 (906)
Q Consensus 560 ~l~~L~~L~Ls~~~~i~~---lp~~i~~L~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~ 635 (906)
.++.++.|||.+| .|.. +-.-+.+|++|++|+|+.|.+..--... --+.+|+.|-+.++..--.-.......+++
T Consensus 69 ~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred Hhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 3455555555555 4433 2222345555555555555433211111 233455555555442111111122344555
Q ss_pred CceeecccccccCCCCCCCccccccHHhhcCCCCccEEEEEEechhhHHHHhhcccccccceeeEecccCCCcccccccc
Q 002569 636 LRVLRMFAIGVRSPYGLSSSWHENVAEELLGLKYLEVLEITFRSFKAYQTFLSSQKLRSCTQALLLDEFDREESIDVADL 715 (906)
Q Consensus 636 L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l 715 (906)
++.|+++.|++..- ..+....+. --+.+++|+...|...-+.......+..+++..+.+..|+..+.-.-...
T Consensus 148 vtelHmS~N~~rq~-----n~Dd~c~e~--~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~s 220 (418)
T KOG2982|consen 148 VTELHMSDNSLRQL-----NLDDNCIED--WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGS 220 (418)
T ss_pred hhhhhhccchhhhh-----ccccccccc--cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccC
Confidence 55555554422110 000000000 01233444444444443444333344455677777776654333222345
Q ss_pred cccCCCcEEEecCCCCCCceeeecccccccCCCcccCCCCCEEEEecCCCCCCchh-------hhcCCCccEEeee
Q 002569 716 ADLEQLNTLSFVGCDWPGGLRIDYKDMVQKSRQPYVFRSLEEVTVDSCRNLKHLTF-------LVFAPNLKSISVR 784 (906)
Q Consensus 716 ~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-------l~~l~~L~~L~L~ 784 (906)
..++.+..|+++.++.-. |.....+ ..|+.|..|.+.+.+-+..+.. ++.+++++.|+=+
T Consensus 221 e~~p~~~~LnL~~~~ids-----wasvD~L----n~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 221 EPFPSLSCLNLGANNIDS-----WASVDAL----NGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCCCcchhhhhccccccc-----HHHHHHH----cCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 556667777777665432 3322111 2577888888887765554431 4567777777533
No 110
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.08 E-value=0.00013 Score=71.90 Aligned_cols=156 Identities=17% Similarity=0.168 Sum_probs=89.5
Q ss_pred HHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCC--------------------CCCCEEEEEEeC-CcccHHH
Q 002569 170 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP--------------------TDFDSVIWVVVS-KDLQLEK 228 (906)
Q Consensus 170 ~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~f~~~~wv~~s-~~~~~~~ 228 (906)
.+.+.+..+.-...+.++|+.|+||||+|+.+..... .. .+.+. .++... ..... +
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~-~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~-~ 79 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALL-CEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKV-D 79 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCH-H
Confidence 4455555552346899999999999999999988862 11 11111 111111 11111 1
Q ss_pred HHHHHHHHhCCCCCccccCCHHHHHHHHHHH-hccCcEEEEEccccch--hhhhhc---CCcCCCCcEEEEEeccc-ccc
Q 002569 229 IQETIGKKIGLYTDSWKDRSLEEKAQDIFKT-LSKKKFVLLLDDLWER--VDLKKV---GVPLPKNSAVVFTTRFV-DVC 301 (906)
Q Consensus 229 l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~--~~~~~~---~~~~~~gs~iivTtR~~-~v~ 301 (906)
..+++.+. +... ..+.+-++|+|++... .....+ ....+..+.+|++|++. .+.
T Consensus 80 ~i~~i~~~-------------------~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~ 140 (188)
T TIGR00678 80 QVRELVEF-------------------LSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLL 140 (188)
T ss_pred HHHHHHHH-------------------HccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCh
Confidence 11111111 1111 1345678999998653 222222 22223356677666543 222
Q ss_pred cCC-CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHH
Q 002569 302 GGM-EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLA 356 (906)
Q Consensus 302 ~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Pla 356 (906)
..+ .....+.+.+++.++..+.+.+. + -. .+.+..|++.++|.|..
T Consensus 141 ~~i~sr~~~~~~~~~~~~~~~~~l~~~-g-i~-------~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 141 PTIRSRCQVLPFPPLSEEALLQWLIRQ-G-IS-------EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHHhhcEEeeCCCCCHHHHHHHHHHc-C-CC-------HHHHHHHHHHcCCCccc
Confidence 111 23468999999999999998877 2 11 56788999999999853
No 111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=9.8e-05 Score=84.88 Aligned_cols=193 Identities=13% Similarity=0.141 Sum_probs=109.7
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCE--EEEEEeCCcccHHHHHHHHHHH
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDS--VIWVVVSKDLQLEKIQETIGKK 236 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~--~~wv~~s~~~~~~~l~~~i~~~ 236 (906)
.+++|.+..++.+.+++..+.-...+.++|+.|+||||+|+.+++.+. ....... ..+- .+..-.--+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~-c~~~~~~~~~~~~----~cg~c~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN-YEGPDGDGGPTID----LCGVGEHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC-cCCccccCCCccc----cCcccHHHHHHhcC
Confidence 358999999999999998773455799999999999999999998762 1111100 0000 01111111222221
Q ss_pred hCCCC---CccccCCHHHHHHHHHHHh-----ccCcEEEEEccccch--hhhhhcCC---cCCCCcEEEEEe-ccccccc
Q 002569 237 IGLYT---DSWKDRSLEEKAQDIFKTL-----SKKKFVLLLDDLWER--VDLKKVGV---PLPKNSAVVFTT-RFVDVCG 302 (906)
Q Consensus 237 l~~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~---~~~~gs~iivTt-R~~~v~~ 302 (906)
-.... +.......+++.+ +.+.+ .+++-++|+|++... .....+.. ..+..+.+|++| ....+..
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCceEEecccccCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 11000 0001122333222 22222 245568999999643 22333322 223366666555 3333322
Q ss_pred CC-CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHH
Q 002569 303 GM-EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITI 360 (906)
Q Consensus 303 ~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 360 (906)
.+ +....+++.+++.++....+.+.+......-+ .+....|++.++|.+.-+...
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 21 23467899999999999999888754432222 577888999999998655443
No 112
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=0.00011 Score=87.46 Aligned_cols=187 Identities=12% Similarity=0.095 Sum_probs=105.3
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG 238 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 238 (906)
.+++|.+..++.|..++..+.-.+.+.++|+.|+||||+|+.+.+.+ ........ ..+..-..-+.|...-.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L-~C~~~~~~-------~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSL-NCVEGPTS-------TPCGECDSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh-CcccCCCC-------CCCcccHHHHHHHcCCC
Confidence 35899999999999999876334568999999999999999999887 21111100 00000000111110000
Q ss_pred CC-----CCccccCCHHHHHHHHHHH-----hccCcEEEEEccccch--hhhhhc---CCcCCCCcEEEEEec-cccccc
Q 002569 239 LY-----TDSWKDRSLEEKAQDIFKT-----LSKKKFVLLLDDLWER--VDLKKV---GVPLPKNSAVVFTTR-FVDVCG 302 (906)
Q Consensus 239 ~~-----~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~---~~~~~~gs~iivTtR-~~~v~~ 302 (906)
.. .+.......+++.. +++. ..+++-++|||++... .....+ ..-.+..+.+|++|. ...+..
T Consensus 87 ~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIG 165 (824)
T ss_pred CCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 00 00001112222222 2211 2355668999999753 233333 233334666665554 333432
Q ss_pred C-CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHH
Q 002569 303 G-MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLAL 357 (906)
Q Consensus 303 ~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai 357 (906)
. ......|++..++.++..+.+.+.+....... -.+....|++.++|.+..+
T Consensus 166 TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i---d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 166 TIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV---EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 2 23457899999999999998888764433211 1556788999999988544
No 113
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.00013 Score=80.39 Aligned_cols=177 Identities=15% Similarity=0.162 Sum_probs=103.1
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccC-----CCCCCEEE-EEEeCCcccHHHHHHH
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN-----PTDFDSVI-WVVVSKDLQLEKIQET 232 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~~f~~~~-wv~~s~~~~~~~l~~~ 232 (906)
.+++|.+...+.+.+.+..+.-.+.+.++|+.|+||||+|+.+.+..... ...|...+ .+.........+ .+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IRN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HHH
Confidence 35899999999999999876345689999999999999999998876210 01122111 111111111111 111
Q ss_pred HHHHhCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccch--hhhhhcC---CcCCCCcEEEEEe-cccccccC-CC
Q 002569 233 IGKKIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWER--VDLKKVG---VPLPKNSAVVFTT-RFVDVCGG-ME 305 (906)
Q Consensus 233 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~---~~~~~gs~iivTt-R~~~v~~~-~~ 305 (906)
+.+++... -..+++-++++|++... ..+..+. ...+..+.+|++| ....+... ..
T Consensus 96 l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 11111100 01245568999998643 2233332 1122245555555 33333221 12
Q ss_pred ccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHH
Q 002569 306 ARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLAL 357 (906)
Q Consensus 306 ~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai 357 (906)
....+++.++++++....+...+......-+ .+....+++.++|.+-.+
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDA 206 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 3457899999999999999887754432222 578888999999977544
No 114
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.05 E-value=0.00056 Score=68.19 Aligned_cols=172 Identities=21% Similarity=0.232 Sum_probs=100.8
Q ss_pred CcccchhHHHHHHHHHHhc----CCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHH
Q 002569 159 PTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIG 234 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~ 234 (906)
.+|+|.++.++++.=.+.. +..+-.|.++|++|.||||||..+++.. .+ .+. ++-+....
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-gv--n~k----~tsGp~le--------- 89 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-GV--NLK----ITSGPALE--------- 89 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-cC--CeE----eccccccc---------
Confidence 3589999988887666543 2468899999999999999999999998 22 221 11111101
Q ss_pred HHhCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccchh-h--------hh---------------hcCCcCCCCcE
Q 002569 235 KKIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWERV-D--------LK---------------KVGVPLPKNSA 290 (906)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-~--------~~---------------~~~~~~~~gs~ 290 (906)
...+++..+.. |+. .=++.+|.+.... . .+ .+...++.-+-
T Consensus 90 -------------K~gDlaaiLt~-Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 90 -------------KPGDLAAILTN-LEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred -------------ChhhHHHHHhc-CCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 11111111111 121 2244556654310 1 11 11112222233
Q ss_pred EEEEecccccccCCCc--cceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHHHHh
Q 002569 291 VVFTTRFVDVCGGMEA--RRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIGRAM 364 (906)
Q Consensus 291 iivTtR~~~v~~~~~~--~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l 364 (906)
|=.|||.-.+...+.. ..+.+++..+.+|-.+...+.+..-..... ++-+.+|++...|-|--+.-+-+..
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHHHHH
Confidence 4458885444332211 346789999999999999998865443333 6788999999999997655444433
No 115
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00013 Score=81.40 Aligned_cols=176 Identities=16% Similarity=0.184 Sum_probs=105.6
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCC-------------------CCCEEEEEE
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT-------------------DFDSVIWVV 219 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~ 219 (906)
.+++|.+..++.+.+.+..+.-...+.++|+.|+||||+|+.++.... ... .+..++.++
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~Ln-C~~~~~~~pCg~C~~C~~i~~~~~~Dv~eid 91 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLN-CSNGPTSDPCGTCHNCISIKNSNHPDVIEID 91 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHc-CcCCCCCCCccccHHHHHHhccCCCCEEEEe
Confidence 358999999998888887763345899999999999999999987541 100 111223333
Q ss_pred eCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHH-hccCcEEEEEccccch--hhhhhcC---CcCCCCcEEEE
Q 002569 220 VSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKT-LSKKKFVLLLDDLWER--VDLKKVG---VPLPKNSAVVF 293 (906)
Q Consensus 220 ~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~--~~~~~~~---~~~~~gs~iiv 293 (906)
.+....+.++ +++.+. .... ..+++-++|+|++... .....+. ...+..+++|+
T Consensus 92 aas~~~vddI-R~Iie~-------------------~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 92 AASNTSVDDI-KVILEN-------------------SCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred cccCCCHHHH-HHHHHH-------------------HHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 2222121111 111111 1110 2345668999999643 2233332 22233666666
Q ss_pred Eec-ccccccC-CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHH
Q 002569 294 TTR-FVDVCGG-MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALI 358 (906)
Q Consensus 294 TtR-~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 358 (906)
+|. ...+... ......+++.+++.++....+.+.+......-+ .+....|++.++|.+-.+.
T Consensus 152 atte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 152 ATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRNAL 215 (491)
T ss_pred EeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 553 3333221 233567899999999999999988765442222 5677889999999886443
No 116
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00013 Score=84.70 Aligned_cols=191 Identities=15% Similarity=0.183 Sum_probs=109.5
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG 238 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 238 (906)
.+++|.+..++.|..++..+.-...+.++|+.|+||||+|+.+++... ...... ....++.....+.|....+
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 458999999999998888763446678999999999999999998762 111100 0011122223333332221
Q ss_pred CCC---CccccCCHHHHHHHHHHHh-----ccCcEEEEEccccch--hhhhhcCCcC---CCCcEEEEEecc-cccccC-
Q 002569 239 LYT---DSWKDRSLEEKAQDIFKTL-----SKKKFVLLLDDLWER--VDLKKVGVPL---PKNSAVVFTTRF-VDVCGG- 303 (906)
Q Consensus 239 ~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~~---~~gs~iivTtR~-~~v~~~- 303 (906)
... +.......+++. .+.+.+ .+++-++|+|++... .....+...+ +..+.+|++|.+ ..+...
T Consensus 89 ~d~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 89 VDVIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CeEEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 110 000111222222 222221 245678999998643 3333332222 235666665543 233221
Q ss_pred CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHH
Q 002569 304 MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITI 360 (906)
Q Consensus 304 ~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 360 (906)
......+.+.+++.++....+...+.......+ .+....|++.++|.+..+...
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 122457889999999999988887765432222 577889999999999655443
No 117
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00027 Score=80.57 Aligned_cols=194 Identities=15% Similarity=0.183 Sum_probs=109.7
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG 238 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 238 (906)
.+++|-+..++.|.+.+..+.-.+.+.++|+.|+||||+|+.+++... ...... ...++.-..-+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~-C~~~~~-------~~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN-CETAPT-------GEPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc-ccCCCC-------CCCCcccHHHHHHhcCCC
Confidence 357999988888888887763357888999999999999999998872 111110 001111111111211100
Q ss_pred CCC---CccccCCHHHHHHHHHHH-----hccCcEEEEEccccch--hhhhhcCCcC---CCCcEEEEEecc-cccccC-
Q 002569 239 LYT---DSWKDRSLEEKAQDIFKT-----LSKKKFVLLLDDLWER--VDLKKVGVPL---PKNSAVVFTTRF-VDVCGG- 303 (906)
Q Consensus 239 ~~~---~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~~~~---~~gs~iivTtR~-~~v~~~- 303 (906)
... +.......++.. .+.+. ..+++-++|+|++... .....+...+ +....+|++|.. ..+...
T Consensus 88 pDv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 88 VDVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred CceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 000 000011122211 22222 2356679999999653 3333332222 225555555543 333221
Q ss_pred CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCCh-HHHHHHHHHh
Q 002569 304 MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLP-LALITIGRAM 364 (906)
Q Consensus 304 ~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~P-lai~~~~~~l 364 (906)
.+....+++.+++.++....+...+......- -.+.+..|++.++|.+ .|+..+..++
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i---d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY---DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 12345789999999999999988765433212 2677888999999975 5666665544
No 118
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=8.5e-05 Score=82.24 Aligned_cols=196 Identities=12% Similarity=0.136 Sum_probs=107.6
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEE-eCCcccHHHHHHHHHHHh
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVV-VSKDLQLEKIQETIGKKI 237 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~l~~~i~~~l 237 (906)
.+++|.+..++.+..++..+.-...+.++|+.|+||||+|+.+++.. ..........|.. +...+..-..-+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l-~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV-NCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh-cCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 35899999999999988876334568899999999999999999887 2211111111110 001111111111111110
Q ss_pred CCCC---CccccCCHHHHHHHHHHHh-----ccCcEEEEEccccch--hhhhhcCCc---CCCCcEEEEEe-cccccccC
Q 002569 238 GLYT---DSWKDRSLEEKAQDIFKTL-----SKKKFVLLLDDLWER--VDLKKVGVP---LPKNSAVVFTT-RFVDVCGG 303 (906)
Q Consensus 238 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~~---~~~gs~iivTt-R~~~v~~~ 303 (906)
...- +.......+++.+ +.+.+ .+++-++|+|++... ..+..+... .+..+.+|++| +...+...
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 0000 0001111233322 22322 245668899998643 233333222 23356665555 43333221
Q ss_pred C-CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHH
Q 002569 304 M-EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALIT 359 (906)
Q Consensus 304 ~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~ 359 (906)
+ .....+++.++++++....+...+......- -.+.+..|++.++|.+--+..
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i---~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEGISV---DADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 1 2235789999999999988888764332111 267889999999998854433
No 119
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=5.3e-06 Score=58.91 Aligned_cols=38 Identities=29% Similarity=0.539 Sum_probs=16.8
Q ss_pred ceeEEEccCcccccccccccccccccceeecccCccccc
Q 002569 563 CLTVLKMSDNETLRQLPMGISKLVSLQLLDISKTSVVEL 601 (906)
Q Consensus 563 ~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~l 601 (906)
+|++|++++| .|+++|..+++|++|++|++++|+|+.+
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 3444444444 4444444444444444444444444433
No 120
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.99 E-value=4.7e-05 Score=85.08 Aligned_cols=164 Identities=12% Similarity=0.132 Sum_probs=101.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHh
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTL 260 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 260 (906)
..-+.|+|..|+|||+|++++++.... ...-..+++++ ..++...+...++.. ......+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~------~~~f~~~~~~~l~~~---------~~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMS------GDEFARKAVDILQKT---------HKEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEE------HHHHHHHHHHHHHHh---------hhHHHHHHHHh
Confidence 456899999999999999999997621 12223455554 345666666655321 01122333333
Q ss_pred ccCcEEEEEccccch---hhh-hhcCC---cC-CCCcEEEEEeccc---------ccccCCCccceEEeccCChHhHHHH
Q 002569 261 SKKKFVLLLDDLWER---VDL-KKVGV---PL-PKNSAVVFTTRFV---------DVCGGMEARRKFKVECLSDEDAWEL 323 (906)
Q Consensus 261 ~~kr~LlVlDdv~~~---~~~-~~~~~---~~-~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~L 323 (906)
+ +.-+||+||+... ..+ +.+.. .+ ..|..||+|+... .+...+...-.+.+++++.++-..+
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 3 3448899999542 111 22211 11 1266788887643 2233344556788999999999999
Q ss_pred HHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHHH
Q 002569 324 FREKVGEETIESHHSIPELAQTVANECGGLPLALITIGR 362 (906)
Q Consensus 324 f~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~ 362 (906)
+.+++...... ..--+++..-|++.++|.|-.+..+..
T Consensus 284 L~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 284 IKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 99988543210 112267889999999999987755543
No 121
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.98 E-value=0.00013 Score=81.51 Aligned_cols=176 Identities=22% Similarity=0.189 Sum_probs=104.6
Q ss_pred cccchhHHH--HHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCC-CEEEEEEeCCcccHHHHHHHHHHH
Q 002569 160 TVVGLQSQL--EQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF-DSVIWVVVSKDLQLEKIQETIGKK 236 (906)
Q Consensus 160 ~~vgr~~~~--~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~l~~~i~~~ 236 (906)
.++|-.... ..+.++....+...-+.|+|..|+|||+|++++++... ..+. ..++|++. .++..++...
T Consensus 107 Fv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~ 178 (440)
T PRK14088 107 FVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDS 178 (440)
T ss_pred cccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHH
Confidence 345744332 23333333332345699999999999999999999872 2222 25677754 3455555555
Q ss_pred hCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccch---h----hhhhcCCcC-CCCcEEEEEeccc---------c
Q 002569 237 IGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWER---V----DLKKVGVPL-PKNSAVVFTTRFV---------D 299 (906)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---~----~~~~~~~~~-~~gs~iivTtR~~---------~ 299 (906)
+.. .+..+ +.+....+.-+|++||+... . .+-.+...+ ..|..||+||... .
T Consensus 179 ~~~-------~~~~~----f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~r 247 (440)
T PRK14088 179 MKE-------GKLNE----FREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_pred Hhc-------ccHHH----HHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHH
Confidence 431 12222 33333334568999999632 1 111111111 1266788888522 1
Q ss_pred cccCCCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHH
Q 002569 300 VCGGMEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLAL 357 (906)
Q Consensus 300 v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai 357 (906)
+.+.+.....+.+++.+.++-..++.+++......-+ .++..-|++.+.|.--.+
T Consensus 248 L~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 248 LVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELP---EEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHhccccCHHHH
Confidence 2233444567899999999999999988764432222 678888888888875444
No 122
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.97 E-value=0.00034 Score=71.66 Aligned_cols=192 Identities=15% Similarity=0.120 Sum_probs=115.8
Q ss_pred HHHHHHHHHhcC--CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCC---CCEEEEEEeCCcccHHHHHHHHHHHhCCCC
Q 002569 167 QLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD---FDSVIWVVVSKDLQLEKIQETIGKKIGLYT 241 (906)
Q Consensus 167 ~~~~l~~~L~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~ 241 (906)
.++++.+++... ...+-+.|+|.+|.|||++++.+.......... --.++.|.....++...++..|+.+++.+.
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 345555555543 357889999999999999999999877321111 115788888899999999999999999875
Q ss_pred CccccCCHHHHHHHHHHHhcc-CcEEEEEccccch-----hh---hhhcCCcCCC---CcEEEEEecccccccCC-----
Q 002569 242 DSWKDRSLEEKAQDIFKTLSK-KKFVLLLDDLWER-----VD---LKKVGVPLPK---NSAVVFTTRFVDVCGGM----- 304 (906)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~-----~~---~~~~~~~~~~---gs~iivTtR~~~v~~~~----- 304 (906)
. ...+.........+.++. +--+||+|++.+. .+ .-.....+++ -+-|.+-|+.-.-+-..
T Consensus 125 ~--~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 125 R--PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred C--CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHH
Confidence 3 233445555555555554 4458999999763 11 1111112222 34555666532111100
Q ss_pred CccceEEeccCChHh-HHHHHHHHhcccc--ccCCCCchHHHHHHHHHhCCChHHHHHH
Q 002569 305 EARRKFKVECLSDED-AWELFREKVGEET--IESHHSIPELAQTVANECGGLPLALITI 360 (906)
Q Consensus 305 ~~~~~~~l~~L~~~e-~~~Lf~~~a~~~~--~~~~~~~~~~~~~i~~~c~G~Plai~~~ 360 (906)
+...++.++....++ ...|+......-. ..+.-...++++.|...++|+.--+..+
T Consensus 203 ~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 203 SRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred hccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 123466777766544 4444433322111 1222344789999999999997555433
No 123
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.00028 Score=79.40 Aligned_cols=191 Identities=13% Similarity=0.125 Sum_probs=107.2
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG 238 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 238 (906)
.+++|-+...+.+...+..+.-.+++.++|+.|+||||+|+.+++... .....+. .++..-.--+.+.....
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~-c~~~~~~-------~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALV-CEQGPSS-------TPCDTCIQCQSALENRH 85 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhc-CCCCCCC-------CCCcccHHHHHHhhcCC
Confidence 358999999999999998773445779999999999999999888762 1111000 00000000000000000
Q ss_pred CC---CCccccCCHHHHHHHHHHH----hccCcEEEEEccccch--hhhhhcC---CcCCCCcEEEEEeccc-cccc-CC
Q 002569 239 LY---TDSWKDRSLEEKAQDIFKT----LSKKKFVLLLDDLWER--VDLKKVG---VPLPKNSAVVFTTRFV-DVCG-GM 304 (906)
Q Consensus 239 ~~---~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~--~~~~~~~---~~~~~gs~iivTtR~~-~v~~-~~ 304 (906)
.. .+.......+++.+.+... ..+++-++|+|++... .....+. .-.+..+++|++|.+. .+.. ..
T Consensus 86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~ 165 (535)
T PRK08451 86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATIL 165 (535)
T ss_pred CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHH
Confidence 00 0000011123332222211 1245668999999753 2222222 2224467777766543 2211 11
Q ss_pred CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHH
Q 002569 305 EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITI 360 (906)
Q Consensus 305 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 360 (906)
+....+++.+++.++....+.+.+......- -.+.+..|++.++|.+.-+...
T Consensus 166 SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i---~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 166 SRTQHFRFKQIPQNSIISHLKTILEKEGVSY---EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hhceeEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHH
Confidence 2346889999999999999887765443221 2677889999999998655444
No 124
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.97 E-value=3.1e-05 Score=82.56 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=63.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCc--ccHHHHHHHHHHHhCCCCCccccCCHHHH----H
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKD--LQLEKIQETIGKKIGLYTDSWKDRSLEEK----A 253 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~l~~~i~~~l~~~~~~~~~~~~~~~----~ 253 (906)
.-..++|+|++|.|||||++.+++... ..+|+..+|+.+.+. .++.++++.+...+-...-+......... .
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 567899999999999999999999983 348999999998866 78999999995433222110011111111 1
Q ss_pred HHHHHH-hccCcEEEEEccccc
Q 002569 254 QDIFKT-LSKKKFVLLLDDLWE 274 (906)
Q Consensus 254 ~~l~~~-l~~kr~LlVlDdv~~ 274 (906)
+..... -.+++++|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 222222 357899999999954
No 125
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00026 Score=82.10 Aligned_cols=177 Identities=14% Similarity=0.161 Sum_probs=106.4
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhccc--------------------CCCCCCEEEEE
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVD--------------------NPTDFDSVIWV 218 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~~f~~~~wv 218 (906)
.+++|.+...+.+..++..+.-.+.+.++|+.|+||||+|+.+.....- ...+|+. ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 3589999999999999987734456899999999999999998887620 0112321 122
Q ss_pred EeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccch--hhhhhcC---CcCCCCcEEEE
Q 002569 219 VVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWER--VDLKKVG---VPLPKNSAVVF 293 (906)
Q Consensus 219 ~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~~~---~~~~~gs~iiv 293 (906)
..+......++. .+++++... -..+++-++|+|++... .....+. ...+..+.+|+
T Consensus 96 d~~~~~~vd~Ir-~li~~~~~~------------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 96 DAASNNSVDDIR-NLIEQVRIP------------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred cccccCCHHHHH-HHHHHHhhC------------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 222111111111 111111100 01245568899998653 2333332 22334666655
Q ss_pred Ee-cccccccC-CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHH
Q 002569 294 TT-RFVDVCGG-MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALI 358 (906)
Q Consensus 294 Tt-R~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 358 (906)
+| +...+... ......+++.+++.++....+.+.+.......+ .+.+..|++.++|..--+.
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDAL 220 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 44 44444332 234568999999999999999887654432222 5678899999999775443
No 126
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.0002 Score=81.79 Aligned_cols=195 Identities=13% Similarity=0.111 Sum_probs=107.2
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG 238 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 238 (906)
.+++|.+..++.|..++..+.-.+.+.++|+.|+||||+|+.++.... .....+ + ..++.-..-+.|...-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~---~----~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN-CAQGPT---A----TPCGVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-cccCCC---C----CcccccHHHHHhhcccC
Confidence 358999999999999998773345679999999999999999998762 111110 0 00111111111111000
Q ss_pred CC-----CCccccCCHHHH---HHHHHHH-hccCcEEEEEccccch--hhhhhcC---CcCCCCcEEEEEe-cccccccC
Q 002569 239 LY-----TDSWKDRSLEEK---AQDIFKT-LSKKKFVLLLDDLWER--VDLKKVG---VPLPKNSAVVFTT-RFVDVCGG 303 (906)
Q Consensus 239 ~~-----~~~~~~~~~~~~---~~~l~~~-l~~kr~LlVlDdv~~~--~~~~~~~---~~~~~gs~iivTt-R~~~v~~~ 303 (906)
.. .+.......++. ...+... ..+++-++|+|++... .....+. .-.+....+|++| ....+...
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~T 164 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPT 164 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHH
Confidence 00 000001112222 2222111 1345668999998643 2333332 2223356655554 43333221
Q ss_pred -CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChH-HHHHHHHHh
Q 002569 304 -MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPL-ALITIGRAM 364 (906)
Q Consensus 304 -~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~~~~l 364 (906)
.+....+++.+++.++..+.+.+.+......-+ .+....|++.++|.+- |+..+-.++
T Consensus 165 I~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 165 IRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 223568999999999999888887654331111 5667888999999875 444444433
No 127
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00021 Score=82.63 Aligned_cols=184 Identities=13% Similarity=0.169 Sum_probs=103.8
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG 238 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 238 (906)
.+++|.+..++.+..++..+.-.+.+.++|+.|+||||+|+.++.... .....+ .+-.+.. -... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln-C~~~~~--~~~pC~~-------C~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN-CSHKTD--LLEPCQE-------CIEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccccCC--CCCchhH-------HHHh---hc
Confidence 358999999999999998764456778999999999999999988762 111000 0000000 0000 00
Q ss_pred CCC-----CccccCCHHHHHHHHHHHh-----ccCcEEEEEccccch--hhhhhcCC---cCCCCcEEEE-Eeccccccc
Q 002569 239 LYT-----DSWKDRSLEEKAQDIFKTL-----SKKKFVLLLDDLWER--VDLKKVGV---PLPKNSAVVF-TTRFVDVCG 302 (906)
Q Consensus 239 ~~~-----~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~~---~~~~gs~iiv-TtR~~~v~~ 302 (906)
... +.......+++ +.+.+.+ .+++-++|+|++... ..+..+.. -.+....+|+ |++...+..
T Consensus 85 ~~~Dvieidaasn~~vd~I-ReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEI-RELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred CCCcEEEEeccccCCHHHH-HHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 000 00000112221 2222222 356669999998643 23333322 1233555454 544444432
Q ss_pred C-CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHH
Q 002569 303 G-MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALIT 359 (906)
Q Consensus 303 ~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~ 359 (906)
. ......+++.+++.++....+...+........ .+.+..|++.++|.+--+..
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 1 233468999999999999888876543321111 45688899999997754433
No 128
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00027 Score=79.62 Aligned_cols=176 Identities=14% Similarity=0.168 Sum_probs=103.6
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCC-C-----------------CCEEEEEEe
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT-D-----------------FDSVIWVVV 220 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~-----------------f~~~~wv~~ 220 (906)
.+++|.+..++.+..++..+.-.+.+.++|+.|+||||+|+.++....-... . +...+++..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 3589999999999999987634566789999999999999999887621000 0 111111111
Q ss_pred CCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHH-----hccCcEEEEEccccch--hhhhhcC---CcCCCCcE
Q 002569 221 SKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKT-----LSKKKFVLLLDDLWER--VDLKKVG---VPLPKNSA 290 (906)
Q Consensus 221 s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~---~~~~~gs~ 290 (906)
+. ....++. +.+.+. ..+++-++|+|++... .....+. ...+....
T Consensus 96 as-----------------------~~gvd~i-r~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 96 AS-----------------------NRGIDDI-RALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred cc-----------------------CCCHHHH-HHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 11 1111111 122222 1356679999998643 2222221 22223455
Q ss_pred EEEEe-cccccccC-CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHH
Q 002569 291 VVFTT-RFVDVCGG-MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIG 361 (906)
Q Consensus 291 iivTt-R~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 361 (906)
+|++| +...+... ......+.+.+++.++....+.+.+....... -.+.+..|++.++|.+..+....
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i---d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY---EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 55544 43333211 12345789999999999998888765433221 25677889999999876554443
No 129
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.95 E-value=8.1e-07 Score=77.65 Aligned_cols=109 Identities=15% Similarity=0.234 Sum_probs=85.4
Q ss_pred eeEEeccccCCCCCC----CCCCCCCceEEEeecCCCccccccccCCCCceeEEEccCcccccccccccccccccceeec
Q 002569 518 VRRLSLMRNSIDNLP----TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPMGISKLVSLQLLDI 593 (906)
Q Consensus 518 lr~L~l~~~~~~~l~----~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L 593 (906)
+..++++++.+..++ .+....+|...++++|.++++|+.+-..++.++.|+|++| .+.++|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhccc
Confidence 344555555554444 2356677888888888888888887778888899999998 89999988999999999999
Q ss_pred ccCcccccChhhhCCCCCcEecccccccccccChh
Q 002569 594 SKTSVVELPEELKALVNLKCLNLDWAKELVVVPQQ 628 (906)
Q Consensus 594 ~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~ 628 (906)
+.|.+...|+.+..|.+|-.|+..+| ....+|..
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 99999988888888888888888877 45566654
No 130
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=8.6e-06 Score=57.87 Aligned_cols=41 Identities=34% Similarity=0.508 Sum_probs=34.3
Q ss_pred cccceeecccCcccccChhhhCCCCCcEecccccccccccCh
Q 002569 586 VSLQLLDISKTSVVELPEELKALVNLKCLNLDWAKELVVVPQ 627 (906)
Q Consensus 586 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 627 (906)
++|++|++++|+|+.+|..+++|++|++|++++| .++.++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4799999999999999988999999999999999 5676664
No 131
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00035 Score=80.47 Aligned_cols=195 Identities=13% Similarity=0.135 Sum_probs=106.9
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEE-eCCcccHHHHHHHHHHHh
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVV-VSKDLQLEKIQETIGKKI 237 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~l~~~i~~~l 237 (906)
.+++|.+..++.+..++..+.-...+.++|+.|+||||+|+.+++.. -.....+.-.|.. +...++.-..-+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L-~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV-NCQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh-CCCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 35899999999999988876334569999999999999999999887 2211111011111 011111111111221110
Q ss_pred CCCC---CccccCCHHHHHHHHHHH----hccCcEEEEEccccch--hhhhhcCCc---CCCCcEEEEEe-cccccccC-
Q 002569 238 GLYT---DSWKDRSLEEKAQDIFKT----LSKKKFVLLLDDLWER--VDLKKVGVP---LPKNSAVVFTT-RFVDVCGG- 303 (906)
Q Consensus 238 ~~~~---~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~--~~~~~~~~~---~~~gs~iivTt-R~~~v~~~- 303 (906)
...- +.......+++...+... ..+++-++|+|+++.. .....+... .+..+.+|++| +...+...
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI 174 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 0000 000111233333222221 2345668999998653 223333222 22355555544 33333221
Q ss_pred CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHH
Q 002569 304 MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLAL 357 (906)
Q Consensus 304 ~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai 357 (906)
......+++.+++.++....+.+.+......-+ .+.+..|++.++|..--+
T Consensus 175 ~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 175 ASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMRDA 225 (620)
T ss_pred HhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHH
Confidence 233568999999999998888876653321112 677889999999966533
No 132
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00036 Score=78.08 Aligned_cols=174 Identities=15% Similarity=0.193 Sum_probs=102.4
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCC---------------------CCCEEEE
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT---------------------DFDSVIW 217 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---------------------~f~~~~w 217 (906)
.+++|.+..++.+.+++..+.-.+.+.++|+.|+||||+|+.+++... ... +++ .++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~-c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~ 94 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALN-CQNPTEDQEPCNQCASCKEISSGTSLD-VLE 94 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhc-CCCcccCCCCCcccHHHHHHhcCCCCc-eEE
Confidence 358999999999999998763346788999999999999999988762 110 111 111
Q ss_pred EEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHH-HhccCcEEEEEccccch--hhhhhc---CCcCCCCcEE
Q 002569 218 VVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFK-TLSKKKFVLLLDDLWER--VDLKKV---GVPLPKNSAV 291 (906)
Q Consensus 218 v~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~--~~~~~~---~~~~~~gs~i 291 (906)
+......... +..++.+.+.. -..+++-++|+|++... .....+ ....+....+
T Consensus 95 i~g~~~~gid--------------------~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~ 154 (451)
T PRK06305 95 IDGASHRGIE--------------------DIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKF 154 (451)
T ss_pred eeccccCCHH--------------------HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceE
Confidence 1110000011 11111111111 11356778999998643 222222 2222336666
Q ss_pred EEEec-ccccccC-CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHH
Q 002569 292 VFTTR-FVDVCGG-MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLAL 357 (906)
Q Consensus 292 ivTtR-~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai 357 (906)
|++|. ...+... ......+++.++++++....+.+.+....... -.+.+..|++.++|.+--+
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i---~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET---SREALLPIARAAQGSLRDA 219 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 66653 3233221 12346789999999999998887765432111 2567889999999977533
No 133
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.91 E-value=0.00028 Score=78.83 Aligned_cols=156 Identities=21% Similarity=0.218 Sum_probs=94.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHh
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTL 260 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 260 (906)
...+.|+|..|+|||+|++++++... ....-..++|++. .++...+...+.. ..... +.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~-~~~~~~~v~yi~~------~~~~~~~~~~~~~-------~~~~~----~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEIL-ENNPNAKVVYVSS------EKFTNDFVNALRN-------NKMEE----FKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH-HhCCCCcEEEEEH------HHHHHHHHHHHHc-------CCHHH----HHHHH
Confidence 45689999999999999999999873 1111234566643 3444445544421 12222 23333
Q ss_pred ccCcEEEEEccccchh---hh-hhcCC---cC-CCCcEEEEEeccc---------ccccCCCccceEEeccCChHhHHHH
Q 002569 261 SKKKFVLLLDDLWERV---DL-KKVGV---PL-PKNSAVVFTTRFV---------DVCGGMEARRKFKVECLSDEDAWEL 323 (906)
Q Consensus 261 ~~kr~LlVlDdv~~~~---~~-~~~~~---~~-~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~L 323 (906)
++ .-+|||||+.... .+ +.+.. .+ ..+..+|+|+... .+...+.....+.+++.+.++-..+
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 32 3488999996421 11 11111 11 1266788887642 1233334446789999999999999
Q ss_pred HHHHhccccccCCCCchHHHHHHHHHhCCChHHHH
Q 002569 324 FREKVGEETIESHHSIPELAQTVANECGGLPLALI 358 (906)
Q Consensus 324 f~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 358 (906)
+.+++......-+ +++...|++.+.|..-.+.
T Consensus 277 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 277 LQKKAEEEGLELP---DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHH
Confidence 9998865432222 6788888898888776443
No 134
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00028 Score=81.79 Aligned_cols=194 Identities=16% Similarity=0.144 Sum_probs=108.6
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG 238 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 238 (906)
.+++|.+..++.|..++..+.-.+.+.++|+.|+||||+|+.++..+. .. ..+.. ....+...+..+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~-c~-~~~~~----~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN-CL-NSDKP----TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc-CC-CcCCC----CCCCCcccHHHHHHhcCCC
Confidence 357999999999999998763347889999999999999999999872 11 11100 0011122222233322211
Q ss_pred CCC---CccccCCHHHHHHHHHHH----hccCcEEEEEccccch--hhhhhcCCcC---CCCcEEEEEecc-cccccC-C
Q 002569 239 LYT---DSWKDRSLEEKAQDIFKT----LSKKKFVLLLDDLWER--VDLKKVGVPL---PKNSAVVFTTRF-VDVCGG-M 304 (906)
Q Consensus 239 ~~~---~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~--~~~~~~~~~~---~~gs~iivTtR~-~~v~~~-~ 304 (906)
... +.......+++.+.+... ..+++-++|+|++... .....+...+ +....+|++|.+ ..+... .
T Consensus 90 ~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred ccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHH
Confidence 100 000112222222222111 1245668999999753 2333332222 225555555443 233221 1
Q ss_pred CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHH
Q 002569 305 EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIG 361 (906)
Q Consensus 305 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 361 (906)
.....+++.+++.++....+.+.+......-. .+.+..|++.++|.+..+....
T Consensus 170 SRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 170 SRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred hheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 23467888899999988888777654321111 4678899999999886554443
No 135
>PRK06620 hypothetical protein; Validated
Probab=97.90 E-value=5.8e-05 Score=75.46 Aligned_cols=133 Identities=12% Similarity=0.041 Sum_probs=81.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHhc
Q 002569 182 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTLS 261 (906)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 261 (906)
+.+.|+|++|+|||+|++.+++.. . . .++. ..+. .. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~-~--~-----~~~~--~~~~----------------------~~--------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS-N--A-----YIIK--DIFF----------------------NE--------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc-C--C-----EEcc--hhhh----------------------ch--------hHH-
Confidence 679999999999999999987765 1 1 1211 0000 00 011
Q ss_pred cCcEEEEEccccchh--hhhhcCCcC-CCCcEEEEEeccccc-------ccCCCccceEEeccCChHhHHHHHHHHhccc
Q 002569 262 KKKFVLLLDDLWERV--DLKKVGVPL-PKNSAVVFTTRFVDV-------CGGMEARRKFKVECLSDEDAWELFREKVGEE 331 (906)
Q Consensus 262 ~kr~LlVlDdv~~~~--~~~~~~~~~-~~gs~iivTtR~~~v-------~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~ 331 (906)
+..-++++||+.... .+-.+...+ ..|..||+|++.... .+.+.....+++++++.++-..++.+.+...
T Consensus 84 ~~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 84 EKYNAFIIEDIENWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred hcCCEEEEeccccchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 123578899996322 222221112 227889999885433 1222344579999999999888888876543
Q ss_pred cccCCCCchHHHHHHHHHhCCChHHHH
Q 002569 332 TIESHHSIPELAQTVANECGGLPLALI 358 (906)
Q Consensus 332 ~~~~~~~~~~~~~~i~~~c~G~Plai~ 358 (906)
...-+ +++..-|++.+.|.--.+.
T Consensus 164 ~l~l~---~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 164 SVTIS---RQIIDFLLVNLPREYSKII 187 (214)
T ss_pred CCCCC---HHHHHHHHHHccCCHHHHH
Confidence 22222 6777888888777655443
No 136
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.87 E-value=0.0003 Score=77.58 Aligned_cols=167 Identities=16% Similarity=0.255 Sum_probs=96.6
Q ss_pred cccchhHHHHHHHHHHhc---C---------CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHH
Q 002569 160 TVVGLQSQLEQVWRCLVQ---E---------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLE 227 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 227 (906)
++.|++..++++.+.+.. . ...+.|.++|++|+|||++|+++++.. ... |+.++. .
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~----~ 199 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG----S 199 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----H
Confidence 578999999998887632 0 245679999999999999999999986 222 222221 1
Q ss_pred HHHHHHHHHhCCCCCccccCCHHHHHHHHHHHh-ccCcEEEEEccccchh------------h----hhhcCC---cCC-
Q 002569 228 KIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTL-SKKKFVLLLDDLWERV------------D----LKKVGV---PLP- 286 (906)
Q Consensus 228 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~------------~----~~~~~~---~~~- 286 (906)
++. .... . ........+.+.. ...+.+|+|||++... . +..+.. .+.
T Consensus 200 ~l~----~~~~-------g-~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 200 ELV----QKFI-------G-EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred HHh----Hhhc-------c-chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 111 1110 0 1112222233322 3467899999986420 1 111111 111
Q ss_pred -CCcEEEEEecccccccC--C---CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCCh
Q 002569 287 -KNSAVVFTTRFVDVCGG--M---EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLP 354 (906)
Q Consensus 287 -~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~P 354 (906)
.+..||.||........ . .-...+.+++.+.++-.++|+.++.........+ ...+++.+.|.-
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 15567777765433211 1 1235689999999999999998876543222222 456677777753
No 137
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.85 E-value=0.00014 Score=82.29 Aligned_cols=155 Identities=21% Similarity=0.215 Sum_probs=95.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHh
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTL 260 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 260 (906)
..-+.|+|..|+|||+|++++++... ....-..++|++.. ++...+...+.. ...+ .+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~~------~~~~~~~~~~~~-------~~~~----~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTSE------KFTNDFVNALRN-------NTME----EFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEHH------HHHHHHHHHHHc-------CcHH----HHHHHH
Confidence 46689999999999999999999873 11112345666443 334444444321 1122 233333
Q ss_pred ccCcEEEEEccccch---h-hhhhcCC---cC-CCCcEEEEEecccc---------cccCCCccceEEeccCChHhHHHH
Q 002569 261 SKKKFVLLLDDLWER---V-DLKKVGV---PL-PKNSAVVFTTRFVD---------VCGGMEARRKFKVECLSDEDAWEL 323 (906)
Q Consensus 261 ~~kr~LlVlDdv~~~---~-~~~~~~~---~~-~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~L 323 (906)
+ +.-+|||||+... . ..+.+.. .+ ..|..||+|+.... +.+.+.....+++++.+.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 3448999999632 1 1112211 11 12666888886431 233444556889999999999999
Q ss_pred HHHHhccccccCCCCchHHHHHHHHHhCCChHHH
Q 002569 324 FREKVGEETIESHHSIPELAQTVANECGGLPLAL 357 (906)
Q Consensus 324 f~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai 357 (906)
+.+++......-+ .++..-|++.+.|..-.+
T Consensus 289 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 289 LKKKAEEEGIDLP---DEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHH
Confidence 9998865332222 678888999999887644
No 138
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.84 E-value=0.00031 Score=75.88 Aligned_cols=143 Identities=15% Similarity=0.166 Sum_probs=82.9
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG 238 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 238 (906)
.+++|.+...+.+..++..+.-..++.++|++|+||||+|+.+++.. ... ..+++.+. .....+ +..+..+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i-~~~l~~~~ 92 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFV-RNRLTRFA 92 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHH-HHHHHHHH
Confidence 45899999999999999876445677779999999999999999875 122 23444433 111111 11111110
Q ss_pred CCCCccccCCHHHHHHHHHHHhccCcEEEEEccccch--hh----hhhcCCcCCCCcEEEEEecccccc-cC-CCccceE
Q 002569 239 LYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWER--VD----LKKVGVPLPKNSAVVFTTRFVDVC-GG-MEARRKF 310 (906)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~----~~~~~~~~~~gs~iivTtR~~~v~-~~-~~~~~~~ 310 (906)
. . ..+.+.+-++|+||+... .. +..+....+.++++|+||...... .. .+....+
T Consensus 93 ~---------------~--~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i 155 (316)
T PHA02544 93 S---------------T--VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVI 155 (316)
T ss_pred H---------------h--hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEE
Confidence 0 0 001234568999999643 11 222222233477888888643211 10 1123466
Q ss_pred EeccCChHhHHHHHHH
Q 002569 311 KVECLSDEDAWELFRE 326 (906)
Q Consensus 311 ~l~~L~~~e~~~Lf~~ 326 (906)
.++..+.++..+++..
T Consensus 156 ~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 156 DFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EeCCCCHHHHHHHHHH
Confidence 7777788887766544
No 139
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.81 E-value=0.0015 Score=69.70 Aligned_cols=194 Identities=14% Similarity=0.175 Sum_probs=120.7
Q ss_pred CcccchhHHHHHHHHHHhc---CCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHH
Q 002569 159 PTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGK 235 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~ 235 (906)
..++||+.+++.+.+++.. ....+.+-|.|.+|.|||.+...++.+....... ..++++.+..-.....++..|..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~~ 228 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIFS 228 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHHH
Confidence 4589999999999999865 2467899999999999999999999988321112 25678877665567777777777
Q ss_pred HhCCCCCccccCCHHHHHHHHHHHhccC--cEEEEEccccchh-----hhhhcCCcCCC--CcEEEEEec--cccccc--
Q 002569 236 KIGLYTDSWKDRSLEEKAQDIFKTLSKK--KFVLLLDDLWERV-----DLKKVGVPLPK--NSAVVFTTR--FVDVCG-- 302 (906)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~-----~~~~~~~~~~~--gs~iivTtR--~~~v~~-- 302 (906)
.+-.... ...+..+....+..+..+. .+|+|+|..+... .+..+ .-++. ++|+|+.-- .-+..+
T Consensus 229 ~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~l-Fewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 229 SLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTL-FEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeee-hhcccCCcceeeeeeehhhhhHHHHH
Confidence 6621111 1122356667777776654 5899999986431 11111 11111 666554321 111111
Q ss_pred -------CCCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHH
Q 002569 303 -------GMEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALI 358 (906)
Q Consensus 303 -------~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 358 (906)
.--....+...|.+.++..+++..+..... ..+.+....+-+++|+.|.---+.
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~--t~~~~~~Aie~~ArKvaa~SGDlR 366 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES--TSIFLNAAIELCARKVAAPSGDLR 366 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc--ccccchHHHHHHHHHhccCchhHH
Confidence 111345678899999999999999976543 122333445555666655543333
No 140
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.78 E-value=0.00069 Score=67.19 Aligned_cols=47 Identities=26% Similarity=0.434 Sum_probs=38.3
Q ss_pred CcccchhHHHHHHHHHHh---cCCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 159 PTVVGLQSQLEQVWRCLV---QEPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
..++|.|..++.|++--. .+....-+.+||..|.|||++++++.+.+
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 468999999998876543 23255677889999999999999999987
No 141
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.78 E-value=0.00077 Score=76.51 Aligned_cols=155 Identities=19% Similarity=0.159 Sum_probs=95.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHh
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTL 260 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 260 (906)
...+.|+|..|+|||.|++++++...+ ...-..++|++. .++..++...+.. ...+ .+++.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yita------eef~~el~~al~~-------~~~~----~f~~~y 375 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVSS------EEFTNEFINSIRD-------GKGD----SFRRRY 375 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeH------HHHHHHHHHHHHh-------ccHH----HHHHHh
Confidence 345899999999999999999998721 111234566643 3444444443321 1111 223333
Q ss_pred ccCcEEEEEccccch---hhhh----hcCCcCCC-CcEEEEEeccc---------ccccCCCccceEEeccCChHhHHHH
Q 002569 261 SKKKFVLLLDDLWER---VDLK----KVGVPLPK-NSAVVFTTRFV---------DVCGGMEARRKFKVECLSDEDAWEL 323 (906)
Q Consensus 261 ~~kr~LlVlDdv~~~---~~~~----~~~~~~~~-gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~L 323 (906)
.+ -=+|||||+... ..++ .+...+.. |..|||||+.. .+.+.+.....+++.+.+.+.-..+
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 32 347899999642 1111 12122222 67788888752 2234455667899999999999999
Q ss_pred HHHHhccccccCCCCchHHHHHHHHHhCCChHHH
Q 002569 324 FREKVGEETIESHHSIPELAQTVANECGGLPLAL 357 (906)
Q Consensus 324 f~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai 357 (906)
+.+++.......+ +++..-|++.+.+..-.+
T Consensus 455 L~kka~~r~l~l~---~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 455 LRKKAVQEQLNAP---PEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHHhcCCCCC---HHHHHHHHHhccCCHHHH
Confidence 9998865543333 677888888877665443
No 142
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.77 E-value=3.6e-05 Score=80.97 Aligned_cols=230 Identities=20% Similarity=0.249 Sum_probs=149.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCC-EEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD-SVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFK 258 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 258 (906)
..+-+.++|.|||||||++-.+.. . ...|. .++++....-.+...+.-.....++... .+-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHHH
Confidence 468999999999999999999988 4 24454 6667777766677777777777677653 122334445666
Q ss_pred HhccCcEEEEEccccchhh-----hhhcCCcCCCCcEEEEEecccccccCCCccceEEeccCChH-hHHHHHHHHhcccc
Q 002569 259 TLSKKKFVLLLDDLWERVD-----LKKVGVPLPKNSAVVFTTRFVDVCGGMEARRKFKVECLSDE-DAWELFREKVGEET 332 (906)
Q Consensus 259 ~l~~kr~LlVlDdv~~~~~-----~~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-e~~~Lf~~~a~~~~ 332 (906)
...++|.++|+||-....+ ...+.... ..-.|+.|+|.... .....++.+++|+.. ++.++|...+....
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~-~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGAC-PRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccc-hhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhc
Confidence 6778999999999765322 11111111 14567788885332 234567788888865 79999888774321
Q ss_pred --ccCCCCchHHHHHHHHHhCCChHHHHHHHHHhhcCCCHHHHHHHHHHHhhhhhccCC-------CchhhhhhHHhhhc
Q 002569 333 --IESHHSIPELAQTVANECGGLPLALITIGRAMAYKKTPEEWRYAIEVLRRSASEFAG-------LGKEVYPLLKFSYD 403 (906)
Q Consensus 333 --~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~-------~~~~~~~~l~~sy~ 403 (906)
..-.........+|.++.+|.|++|...++..+.- ...+-.. .++.......+ -+......+.+||.
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~---~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~ 235 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAA---GLRDRFRLLTGGARLAVLRQQTLRASLDWSYA 235 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHH---HHhhHHHHHhcccccchhHHHhccchhhhhhH
Confidence 11223336788999999999999999988887653 2222221 22221111111 11346677889999
Q ss_pred CCCchhhhhhhhhhccCCCCcccC
Q 002569 404 CLPSDAIRSCFLYCCLYPEDYGID 427 (906)
Q Consensus 404 ~L~~~~~k~cfl~~~~fp~~~~i~ 427 (906)
-|.. ..+--|--++.|...|...
T Consensus 236 lLtg-we~~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 236 LLTG-WERALFGRLAVFVGGFDLG 258 (414)
T ss_pred hhhh-HHHHHhcchhhhhhhhccc
Confidence 8887 6788888888887666544
No 143
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.77 E-value=0.00031 Score=84.83 Aligned_cols=178 Identities=15% Similarity=0.193 Sum_probs=98.9
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccC--CC-CCCEEEE-EEeCCcccHHHHHHHHH
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN--PT-DFDSVIW-VVVSKDLQLEKIQETIG 234 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~-~f~~~~w-v~~s~~~~~~~l~~~i~ 234 (906)
..++||+.++.++++.|... ...-+.++|++|+||||+|+.++.+.... .. -....+| +..+. + .
T Consensus 187 d~~iGr~~ei~~~i~~l~r~-~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------l----~ 255 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR-RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------L----Q 255 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC-CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh------h----h
Confidence 35899999999999999876 45566799999999999999999987211 00 1122232 22221 0 0
Q ss_pred HHhCCCCCccccCCHHHHHHHHHHHhc--cCcEEEEEccccchh---------hhhhc-CCcCCCC-cEEEEEecccccc
Q 002569 235 KKIGLYTDSWKDRSLEEKAQDIFKTLS--KKKFVLLLDDLWERV---------DLKKV-GVPLPKN-SAVVFTTRFVDVC 301 (906)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~---------~~~~~-~~~~~~g-s~iivTtR~~~v~ 301 (906)
. + .. .....+.....+.+.+. +++.+|++|++.... +...+ ...+..| -++|-||...+..
T Consensus 256 a--g-~~---~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~ 329 (852)
T TIGR03345 256 A--G-AS---VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYK 329 (852)
T ss_pred c--c-cc---cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHh
Confidence 0 0 00 11122222222222222 468999999986431 11112 2233334 4566666543221
Q ss_pred cC-------CCccceEEeccCChHhHHHHHHHHhccccc-cCCCCchHHHHHHHHHhCCC
Q 002569 302 GG-------MEARRKFKVECLSDEDAWELFREKVGEETI-ESHHSIPELAQTVANECGGL 353 (906)
Q Consensus 302 ~~-------~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~-~~~~~~~~~~~~i~~~c~G~ 353 (906)
.. ......+.+++++.+++.+++......-.. ..-.--.+....+++.+.+.
T Consensus 330 ~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 330 KYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 11 123468999999999999997554422110 00011245667777777654
No 144
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.76 E-value=0.00028 Score=78.60 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=90.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHh
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTL 260 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 260 (906)
..-+.|+|+.|+|||+|++++++... .....++|++ ...+...+...+... . ...++...
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~------~~~f~~~~~~~l~~~-------~----~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVR------SELFTEHLVSAIRSG-------E----MQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEee------HHHHHHHHHHHHhcc-------h----HHHHHHHc
Confidence 35688999999999999999999872 1223456664 234444555444211 1 12233333
Q ss_pred ccCcEEEEEccccchhh----hhhcCCc---C-CCCcEEEEEeccc---------ccccCCCccceEEeccCChHhHHHH
Q 002569 261 SKKKFVLLLDDLWERVD----LKKVGVP---L-PKNSAVVFTTRFV---------DVCGGMEARRKFKVECLSDEDAWEL 323 (906)
Q Consensus 261 ~~kr~LlVlDdv~~~~~----~~~~~~~---~-~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~L 323 (906)
+ +.-+|++||+..... .+.+... + ..|..||+||... .+.+.+.....+.+.+++.++-..+
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 3 345888999854211 1111111 1 1267788888542 2233344557889999999999999
Q ss_pred HHHHhccccccCCCCchHHHHHHHHHhCCCh
Q 002569 324 FREKVGEETIESHHSIPELAQTVANECGGLP 354 (906)
Q Consensus 324 f~~~a~~~~~~~~~~~~~~~~~i~~~c~G~P 354 (906)
+.+++......-+ .++..-|++.+.|.-
T Consensus 280 L~~k~~~~~~~l~---~evl~~la~~~~~di 307 (445)
T PRK12422 280 LERKAEALSIRIE---ETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCH
Confidence 9988765432222 566666777777553
No 145
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.76 E-value=0.00017 Score=78.46 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=57.1
Q ss_pred cccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHH
Q 002569 160 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQE 231 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~ 231 (906)
++++.+...+.+...|... +.|.++|++|+|||++|+.+++.. .....|+.+.||.+++..+..++..
T Consensus 176 d~~i~e~~le~l~~~L~~~---~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK---KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred cccCCHHHHHHHHHHHhcC---CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhc
Confidence 4688899999999988754 678889999999999999999987 4456788999999998887766654
No 146
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=3.4e-05 Score=82.66 Aligned_cols=60 Identities=23% Similarity=0.365 Sum_probs=28.4
Q ss_pred ceeeeEEeccccCCCCCCCCCCCCCceEEEeecCC-CccccccccCCCCceeEEEccCcccccccc
Q 002569 515 WEIVRRLSLMRNSIDNLPTVPTCPHLLTLFLNRNP-LRTITGGFFQSMSCLTVLKMSDNETLRQLP 579 (906)
Q Consensus 515 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~-l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp 579 (906)
+.++++|+++++.+..+|.++ ++|++|.+++|. ++.+|.. + ..+|++|++++|..+..+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccc
Confidence 344555555555555554322 245555555543 3333322 1 1345555555554444444
No 147
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00068 Score=77.69 Aligned_cols=191 Identities=16% Similarity=0.127 Sum_probs=107.1
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG 238 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 238 (906)
.+++|-+..++.+..++..+.-.+.+.++|+.|+||||+|+.+++... ....... ..+....+ -+.|...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~-c~~~~~~---~pC~~C~~----C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN-CVNGPTP---MPCGECSS----CKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-cccCCCC---CCCccchH----HHHHHcCCC
Confidence 358999999999999998764456789999999999999999998872 1111100 00000000 011111000
Q ss_pred CC---CCccccCCHHHHHHHH---HHH-hccCcEEEEEccccch--hhhhhcCCc---CCCCcEEEEEecc-cccccC-C
Q 002569 239 LY---TDSWKDRSLEEKAQDI---FKT-LSKKKFVLLLDDLWER--VDLKKVGVP---LPKNSAVVFTTRF-VDVCGG-M 304 (906)
Q Consensus 239 ~~---~~~~~~~~~~~~~~~l---~~~-l~~kr~LlVlDdv~~~--~~~~~~~~~---~~~gs~iivTtR~-~~v~~~-~ 304 (906)
.. -+.......+++.+.. ... ..+++-++|+|++... ..+..+... .+..+.+|++|.. ..+... .
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~ 167 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIK 167 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHH
Confidence 00 0000112223322211 111 2356678999998643 333333222 2335666665543 222211 1
Q ss_pred CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHH
Q 002569 305 EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITI 360 (906)
Q Consensus 305 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 360 (906)
.....+++.+++.++....+.+.+......- -.+.+..|++.++|.+-.+...
T Consensus 168 SRc~~~~f~~l~~~el~~~L~~i~~~egi~i---d~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 168 SRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY---EDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HhceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 2345689999999999988888764433211 2677888999999988654433
No 148
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.74 E-value=6.7e-07 Score=98.59 Aligned_cols=126 Identities=24% Similarity=0.295 Sum_probs=98.8
Q ss_pred cceeeeEEeccccCCCCCC-CCCCCCCceEEEeecCCCccccccccCCCCceeEEEccCcccccccccccccccccceee
Q 002569 514 GWEIVRRLSLMRNSIDNLP-TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPMGISKLVSLQLLD 592 (906)
Q Consensus 514 ~~~~lr~L~l~~~~~~~l~-~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 592 (906)
.|.++...++++|.+..+. .+.-++.|+.|+|++|.++++. ++..+++|++|||++| .+..+|.--.-=-+|+.|+
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhhheeee
Confidence 4677888888888877665 3445789999999999988876 5889999999999999 8988884322223499999
Q ss_pred cccCcccccChhhhCCCCCcEecccccccccccCh-hhhcCCCCCceeecccc
Q 002569 593 ISKTSVVELPEELKALVNLKCLNLDWAKELVVVPQ-QLLSNFSRLRVLRMFAI 644 (906)
Q Consensus 593 L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~ 644 (906)
|++|.++++ ..+.+|.+|+.||+++| .+....+ ..++.|..|+.|++.||
T Consensus 239 lrnN~l~tL-~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 239 LRNNALTTL-RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred ecccHHHhh-hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCC
Confidence 999999988 58899999999999998 4443221 12567788999999887
No 149
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00062 Score=78.78 Aligned_cols=190 Identities=13% Similarity=0.136 Sum_probs=104.3
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG 238 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 238 (906)
.+++|.+..++.+.+++..+.-.+.+.++|+.|+||||+|+.+++... .....+ ...++....-+.|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~-c~~~~~-------~~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN-CEQGLT-------AEPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-CCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 358999999999999988763346678999999999999999988862 111110 000011111111111000
Q ss_pred CC---CCccccCCHHHHHHHHHHHh-----ccCcEEEEEccccch--hhhhhcC---CcCCCCcEEEEEe-cccccccC-
Q 002569 239 LY---TDSWKDRSLEEKAQDIFKTL-----SKKKFVLLLDDLWER--VDLKKVG---VPLPKNSAVVFTT-RFVDVCGG- 303 (906)
Q Consensus 239 ~~---~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~~---~~~~~gs~iivTt-R~~~v~~~- 303 (906)
.. .+.......++. +.+.+.+ .+++-++|+|++... .....+. .-.+..+.+|++| ....+...
T Consensus 88 ~d~~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 88 VDVFEIDGASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCeeeeeccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 00 000001112221 1222221 245568999999643 2233332 2223356666544 44444322
Q ss_pred CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChH-HHHHH
Q 002569 304 MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPL-ALITI 360 (906)
Q Consensus 304 ~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~ 360 (906)
.+....+++.+++.++....+...+......-+ .+....|++.++|..- |+..+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 223467889999999998888776654332222 5677889999999764 44444
No 150
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.69 E-value=0.0004 Score=76.63 Aligned_cols=168 Identities=15% Similarity=0.180 Sum_probs=94.5
Q ss_pred cccchhHHHHHHHHHHhc---C---------CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHH
Q 002569 160 TVVGLQSQLEQVWRCLVQ---E---------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLE 227 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 227 (906)
++.|.+..++++.+.+.- . ...+.+.++|++|+|||++|+++++.. ...| +.+..+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f---i~V~~se----- 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF---LRVVGSE----- 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE---EEEecch-----
Confidence 468899988888877631 0 245678899999999999999999986 2333 2221111
Q ss_pred HHHHHHHHHhCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccchh------------h----hhhcCCc---C--C
Q 002569 228 KIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWERV------------D----LKKVGVP---L--P 286 (906)
Q Consensus 228 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~----~~~~~~~---~--~ 286 (906)
+.. .. ...........+.....+.+.+|+||+++... . +..+... + .
T Consensus 253 -L~~----k~-------~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 253 -LIQ----KY-------LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred -hhh----hh-------cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 111 11 00111112222222334567899999975310 0 1111111 1 1
Q ss_pred CCcEEEEEecccccccC-----CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCCh
Q 002569 287 KNSAVVFTTRFVDVCGG-----MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLP 354 (906)
Q Consensus 287 ~gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~P 354 (906)
.+.+||.||........ -.-...+.+...+.++..++|..++.........+ ...++..+.|.-
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvd----l~~la~~t~g~s 389 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVD----LEEFIMAKDELS 389 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcC----HHHHHHhcCCCC
Confidence 25678888875443221 11245789999999999999998875443222222 344555665543
No 151
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.67 E-value=6.9e-05 Score=80.40 Aligned_cols=60 Identities=18% Similarity=0.307 Sum_probs=26.3
Q ss_pred CCCceEEEeecCCCccccccccCCCCceeEEEccCcccccccccccccccccceeecccC-cccccC
Q 002569 537 CPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPMGISKLVSLQLLDISKT-SVVELP 602 (906)
Q Consensus 537 ~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~-~i~~lp 602 (906)
|++++.|++++|.++.+|. + -.+|+.|.+++|..++.+|..+. .+|++|++++| .+..+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc
Confidence 3444455555554444431 1 12344555554444444443332 34455555444 444444
No 152
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.67 E-value=0.00033 Score=73.00 Aligned_cols=151 Identities=13% Similarity=0.132 Sum_probs=78.4
Q ss_pred cccchhHHHHHHHHH---Hh------c-----CCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCccc
Q 002569 160 TVVGLQSQLEQVWRC---LV------Q-----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQ 225 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~---L~------~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 225 (906)
.++|.+..+++|.+. .. . .+....+.++|++|+||||+|+.+++...+. ..-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~-~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEM-NVLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhc-CcccCCceEEecHH--
Confidence 378888777666433 21 0 1245678899999999999999998875211 11111123333221
Q ss_pred HHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccch----------hhhhhcCCcCCC---CcEEE
Q 002569 226 LEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWER----------VDLKKVGVPLPK---NSAVV 292 (906)
Q Consensus 226 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~~~~~~~~~~---gs~ii 292 (906)
++.. .. ...........+.. . ..-+|++|++... .....+.....+ ...+|
T Consensus 84 --~l~~----~~-------~g~~~~~~~~~~~~-a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vi 147 (261)
T TIGR02881 84 --DLVG----EY-------IGHTAQKTREVIKK-A--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLI 147 (261)
T ss_pred --Hhhh----hh-------ccchHHHHHHHHHh-c--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEE
Confidence 1111 10 00111111222221 1 2348899999642 122223222222 23455
Q ss_pred EEeccccc----------ccCCCccceEEeccCChHhHHHHHHHHhccc
Q 002569 293 FTTRFVDV----------CGGMEARRKFKVECLSDEDAWELFREKVGEE 331 (906)
Q Consensus 293 vTtR~~~v----------~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~ 331 (906)
+++..... .+.+ ...+.+++++.+|..+++.+.+...
T Consensus 148 la~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred ecCCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHHHHHHHHHHHc
Confidence 55433221 1121 2468899999999999998887543
No 153
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.66 E-value=0.0016 Score=75.09 Aligned_cols=188 Identities=17% Similarity=0.141 Sum_probs=105.3
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG 238 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 238 (906)
.+++|.+..++.+.+++..+.-.+.+.++|+.|+||||+|+.+..... ....-+ ..+++....-+.|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~-c~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN-CLNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 458999999999999998764566788999999999999999988762 111000 011111111111111100
Q ss_pred CCC---CccccCCHHHHHHHHHHH-----hccCcEEEEEccccch--hhhhhcCC---cCCCCcEEEEEe-cccccccC-
Q 002569 239 LYT---DSWKDRSLEEKAQDIFKT-----LSKKKFVLLLDDLWER--VDLKKVGV---PLPKNSAVVFTT-RFVDVCGG- 303 (906)
Q Consensus 239 ~~~---~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~--~~~~~~~~---~~~~gs~iivTt-R~~~v~~~- 303 (906)
... +.......++.. .+.+. ..+++-++|+|++... ..+..+.. ..+....+|++| ....+...
T Consensus 88 ~dv~eidaas~~~vd~ir-~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI 166 (559)
T PRK05563 88 MDVIEIDAASNNGVDEIR-DIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATI 166 (559)
T ss_pred CCeEEeeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHH
Confidence 000 000011222221 22222 2345668899999743 23333322 223355555544 43333221
Q ss_pred CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHH
Q 002569 304 MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALI 358 (906)
Q Consensus 304 ~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 358 (906)
.+....+.+.+++.++....+...+.......+ .+....|++.++|.+..+.
T Consensus 167 ~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 167 LSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 123467889999999999988887754332112 5678889999999876543
No 154
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.0044 Score=65.86 Aligned_cols=193 Identities=17% Similarity=0.150 Sum_probs=107.2
Q ss_pred cccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccC------------CCCCCEEEEEEeCCcccHH
Q 002569 160 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN------------PTDFDSVIWVVVSKDLQLE 227 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------~~~f~~~~wv~~s~~~~~~ 227 (906)
+++|.+..++.+...+..+.-.+...++|+.|+||+++|..++...--. .....-..|+.-....+-.
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~ 84 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGK 84 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccccc
Confidence 5799999999999999887345899999999999999999888775210 0111122333211000000
Q ss_pred HHHHHHHHHhCCCCCccccCCHHHHHHHHHHHh-----ccCcEEEEEccccchh--h---hhhcCCcCCCCcEEEEEec-
Q 002569 228 KIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTL-----SKKKFVLLLDDLWERV--D---LKKVGVPLPKNSAVVFTTR- 296 (906)
Q Consensus 228 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~---~~~~~~~~~~gs~iivTtR- 296 (906)
.+-..-++..+...........++ ++.+.+.+ .+++-++|+|++.... . +-++..-.+ .+.+|++|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 85 LITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred ccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECC
Confidence 000111111111100001112222 23344443 3466789999986532 2 222222223 445555554
Q ss_pred ccccccC-CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHH
Q 002569 297 FVDVCGG-MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITI 360 (906)
Q Consensus 297 ~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 360 (906)
...+... .+....+.+.++++++..+.+.+...... .......++..++|.|..+..+
T Consensus 163 ~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 163 PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred hHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHH
Confidence 3333222 23457899999999999999988743221 1112468899999999766543
No 155
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.66 E-value=0.00036 Score=72.40 Aligned_cols=164 Identities=20% Similarity=0.217 Sum_probs=105.2
Q ss_pred CCcccchhHHHHHHHHHHhcCCC--CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHH
Q 002569 158 EPTVVGLQSQLEQVWRCLVQEPA--AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGK 235 (906)
Q Consensus 158 ~~~~vgr~~~~~~l~~~L~~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~ 235 (906)
.+.+.+|+.++..+..++.+.+. +..|-|+|.+|.|||.+++++.+.. . ...+|+++-..++.+.++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n---~~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---N---LENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---C---CcceeeehHHhccHHHHHHHHHH
Confidence 45689999999999999876533 4456999999999999999999886 1 23589999999999999999999
Q ss_pred HhCC-CCCccc-c---CCHHHHHHHHHH--Hhc--cCcEEEEEccccchhhhhhc--------CCcCCCCcEEEEEeccc
Q 002569 236 KIGL-YTDSWK-D---RSLEEKAQDIFK--TLS--KKKFVLLLDDLWERVDLKKV--------GVPLPKNSAVVFTTRFV 298 (906)
Q Consensus 236 ~l~~-~~~~~~-~---~~~~~~~~~l~~--~l~--~kr~LlVlDdv~~~~~~~~~--------~~~~~~gs~iivTtR~~ 298 (906)
+.+. +.+... . ....+....+.+ ... ++.++||||+++...+...+ ...+....-+|+++-..
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~ 158 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPS 158 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 8852 221111 1 111222333333 122 35899999999764433221 11122233444444321
Q ss_pred cc---ccCCCcc--ceEEeccCChHhHHHHHHHH
Q 002569 299 DV---CGGMEAR--RKFKVECLSDEDAWELFREK 327 (906)
Q Consensus 299 ~v---~~~~~~~--~~~~l~~L~~~e~~~Lf~~~ 327 (906)
.. ...++.. .++..+.-+.+|...++.+-
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 11 1113333 35677888999999888654
No 156
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=1.5e-05 Score=93.10 Aligned_cols=137 Identities=20% Similarity=0.166 Sum_probs=80.4
Q ss_pred CCceEEEeecCC--CccccccccCCCCceeEEEccCccccc--ccccccccccccceeecccCcccccChhhhCCCCCcE
Q 002569 538 PHLLTLFLNRNP--LRTITGGFFQSMSCLTVLKMSDNETLR--QLPMGISKLVSLQLLDISKTSVVELPEELKALVNLKC 613 (906)
Q Consensus 538 ~~Lr~L~l~~~~--l~~~~~~~~~~l~~L~~L~Ls~~~~i~--~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 613 (906)
.+|+.|++++.. ....+..+-.-+|.|+.|.+++- .+. ++-.-..++++|..||+|+|+++.+ .++++|+|||.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 467788887755 22333343456778888888775 222 2333455677888888888888877 67888888888
Q ss_pred ecccccccccccCh-hhhcCCCCCceeecccccccCCCCCCCccccccHHhhcCCCCccEEEEEEechh
Q 002569 614 LNLDWAKELVVVPQ-QLLSNFSRLRVLRMFAIGVRSPYGLSSSWHENVAEELLGLKYLEVLEITFRSFK 681 (906)
Q Consensus 614 L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 681 (906)
|.+++-. +..-+. ..+-+|++|+.|+++....... . ....-..+.-..||+|+.||++++.+.
T Consensus 200 L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~---~-~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDD---T-KIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCC-CCchhhHHHHhcccCCCeeeccccccccc---h-HHHHHHHHhcccCccccEEecCCcchh
Confidence 8776542 222110 1145678888888875321110 0 001112233344777888887766553
No 157
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.64 E-value=5.4e-05 Score=71.29 Aligned_cols=101 Identities=23% Similarity=0.334 Sum_probs=65.8
Q ss_pred eeeEEeccccCCCCCCCCCCCCCceEEEeecCCCccccccccCCCCceeEEEccCcccccccc--cccccccccceeecc
Q 002569 517 IVRRLSLMRNSIDNLPTVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLP--MGISKLVSLQLLDIS 594 (906)
Q Consensus 517 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp--~~i~~L~~L~~L~L~ 594 (906)
....+++.+|++..++.++.++.|.+|.+.+|.++.+.+..-.-+++|..|.|.+| +|..+- ..+..++.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeec
Confidence 35567777777777777777788888888888877777776566677777777777 666542 124455666666666
Q ss_pred cCcccccCh----hhhCCCCCcEecccc
Q 002569 595 KTSVVELPE----ELKALVNLKCLNLDW 618 (906)
Q Consensus 595 ~~~i~~lp~----~i~~L~~L~~L~l~~ 618 (906)
+|.+..-+. .+.++++|++||..+
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 665554331 345555555555543
No 158
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.64 E-value=0.00068 Score=74.31 Aligned_cols=168 Identities=15% Similarity=0.181 Sum_probs=94.6
Q ss_pred cccchhHHHHHHHHHHhc---------C---CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHH
Q 002569 160 TVVGLQSQLEQVWRCLVQ---------E---PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLE 227 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~---------~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 227 (906)
++.|.+..+++|.+.+.- . ...+-|.++|++|+|||++|+++++.. ...| +.+.. .
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f---i~i~~------s 213 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF---IRVVG------S 213 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEeh------H
Confidence 578988888888776531 0 246789999999999999999999986 2233 12211 1
Q ss_pred HHHHHHHHHhCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccchh------------h----hhhcCCc---CC--
Q 002569 228 KIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWERV------------D----LKKVGVP---LP-- 286 (906)
Q Consensus 228 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~----~~~~~~~---~~-- 286 (906)
.+. ... .......+...+.......+.+|+||+++... . +..+... +.
T Consensus 214 ~l~----~k~-------~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 214 EFV----QKY-------LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred HHH----HHh-------cchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 111 111 00111222222223334578999999975320 0 1111111 11
Q ss_pred CCcEEEEEecccccccC--C---CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCCh
Q 002569 287 KNSAVVFTTRFVDVCGG--M---EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLP 354 (906)
Q Consensus 287 ~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~P 354 (906)
.+..||.||...+.... . .-...+.++..+.++-..+|.............+ ..++++.+.|..
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 25678888875443221 1 1235688888899888888887765433222222 345666676653
No 159
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.63 E-value=0.0045 Score=61.24 Aligned_cols=177 Identities=16% Similarity=0.215 Sum_probs=104.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEe-CCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVV-SKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFK 258 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~-s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 258 (906)
+.+++.|+|.-|.|||+++++...... + +.++-|.+ ........+...|+..+............++..+.+..
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~---~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN---E--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC---C--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 467999999999999999997666652 1 22222333 33456778888888888763211111123333444444
Q ss_pred Hh-ccCc-EEEEEccccch--hhhhhc---CCcCCCCcE---EEEEecccccc--------cCCC-ccce-EEeccCChH
Q 002569 259 TL-SKKK-FVLLLDDLWER--VDLKKV---GVPLPKNSA---VVFTTRFVDVC--------GGME-ARRK-FKVECLSDE 318 (906)
Q Consensus 259 ~l-~~kr-~LlVlDdv~~~--~~~~~~---~~~~~~gs~---iivTtR~~~v~--------~~~~-~~~~-~~l~~L~~~ 318 (906)
.. +++| ..+++||.... ..++.+ ...-.++++ |+..-. +... +... .... |++.|++.+
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gq-p~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQ-PKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCC-cccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 43 4566 89999998643 223222 111111222 222221 1111 1111 1223 899999999
Q ss_pred hHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHHH
Q 002569 319 DAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIGR 362 (906)
Q Consensus 319 e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~ 362 (906)
+...++..+........+---.+....|.....|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999988876543222223356778899999999999977664
No 160
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.60 E-value=0.00028 Score=84.64 Aligned_cols=154 Identities=16% Similarity=0.267 Sum_probs=89.1
Q ss_pred cccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccC--CCCC-CEEEEEEeCCcccHHHHHHHHHHH
Q 002569 160 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN--PTDF-DSVIWVVVSKDLQLEKIQETIGKK 236 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f-~~~~wv~~s~~~~~~~l~~~i~~~ 236 (906)
.++||+++++++++.|... ...-+.++|++|+|||++|+.++...... ...+ +..+|. + +...+ ...
T Consensus 183 ~~igr~~ei~~~~~~L~~~-~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l----~a~ 252 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRR-KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL----LAG 252 (731)
T ss_pred cccCcHHHHHHHHHHHhcC-CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH----hhh
Confidence 4899999999999999776 45566799999999999999999986311 1111 233332 1 11111 110
Q ss_pred hCCCCCccccCCHHHHHHHHHHHh-ccCcEEEEEccccchh----------hhhhc-CCcCCCCc-EEEEEeccccccc-
Q 002569 237 IGLYTDSWKDRSLEEKAQDIFKTL-SKKKFVLLLDDLWERV----------DLKKV-GVPLPKNS-AVVFTTRFVDVCG- 302 (906)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~----------~~~~~-~~~~~~gs-~iivTtR~~~v~~- 302 (906)
.. ...+.++....+.+.+ ..++.+|++|++.... +...+ ...+..|. ++|-+|..++...
T Consensus 253 ~~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~ 326 (731)
T TIGR02639 253 TK------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNH 326 (731)
T ss_pred cc------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHH
Confidence 00 1112333334444433 3467899999986321 12222 22233343 4555554322110
Q ss_pred ------CCCccceEEeccCChHhHHHHHHHHhc
Q 002569 303 ------GMEARRKFKVECLSDEDAWELFREKVG 329 (906)
Q Consensus 303 ------~~~~~~~~~l~~L~~~e~~~Lf~~~a~ 329 (906)
.......+.++.++.++..+++.....
T Consensus 327 ~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 327 FEKDRALSRRFQKIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred hhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHH
Confidence 011235789999999999999986643
No 161
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.0021 Score=68.76 Aligned_cols=165 Identities=11% Similarity=0.092 Sum_probs=87.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC-----CC-CCccccCCHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG-----LY-TDSWKDRSLEEKA 253 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~-----~~-~~~~~~~~~~~~~ 253 (906)
-.+.+.++|+.|+||||+|+.++.... ...... ...++.-..-+.+...-. +. .+.......++..
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~ll-C~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR 92 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALL-CEAPQG-------GGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVR 92 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHc-CCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHH
Confidence 356789999999999999999988772 111100 000000000011110000 00 0000112233333
Q ss_pred HHHHHHh-----ccCcEEEEEccccch--hhhhhc---CCcCCCCcEEEEEeccc-ccccC-CCccceEEeccCChHhHH
Q 002569 254 QDIFKTL-----SKKKFVLLLDDLWER--VDLKKV---GVPLPKNSAVVFTTRFV-DVCGG-MEARRKFKVECLSDEDAW 321 (906)
Q Consensus 254 ~~l~~~l-----~~kr~LlVlDdv~~~--~~~~~~---~~~~~~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~e~~ 321 (906)
+ +.+.+ .+++-++|+|+++.. .....+ ..-.+.++.+|+||.+. .+... .+....+.+.+++.+++.
T Consensus 93 ~-l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~ 171 (328)
T PRK05707 93 E-LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESL 171 (328)
T ss_pred H-HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHH
Confidence 2 22222 234455678999753 222222 22223467777777654 33222 233567899999999999
Q ss_pred HHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHH
Q 002569 322 ELFREKVGEETIESHHSIPELAQTVANECGGLPLALITI 360 (906)
Q Consensus 322 ~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 360 (906)
+.+.+...... .+.+..++..++|.|..+..+
T Consensus 172 ~~L~~~~~~~~-------~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 172 QWLQQALPESD-------ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHhcccCC-------hHHHHHHHHHcCCCHHHHHHH
Confidence 99977642211 445667889999999866544
No 162
>PRK10536 hypothetical protein; Provisional
Probab=97.58 E-value=0.002 Score=64.79 Aligned_cols=130 Identities=15% Similarity=0.164 Sum_probs=74.7
Q ss_pred ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEe----CCc-----ccHHH---
Q 002569 161 VVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVV----SKD-----LQLEK--- 228 (906)
Q Consensus 161 ~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~----s~~-----~~~~~--- 228 (906)
+.++......++.++.+. .+|.+.|++|.|||+||.++..+.. ....|+.++...- ++. -+..+
T Consensus 57 i~p~n~~Q~~~l~al~~~---~lV~i~G~aGTGKT~La~a~a~~~l-~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~ 132 (262)
T PRK10536 57 ILARNEAQAHYLKAIESK---QLIFATGEAGCGKTWISAAKAAEAL-IHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFA 132 (262)
T ss_pred ccCCCHHHHHHHHHHhcC---CeEEEECCCCCCHHHHHHHHHHHHH-hcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHH
Confidence 577888888888888754 5999999999999999999888631 1234554443321 110 01111
Q ss_pred -HHHHHHHHhCCCCCccccCCHHHHHH--------HHHHHhccCcE---EEEEccccch--hhhhhcCCcCCCCcEEEEE
Q 002569 229 -IQETIGKKIGLYTDSWKDRSLEEKAQ--------DIFKTLSKKKF---VLLLDDLWER--VDLKKVGVPLPKNSAVVFT 294 (906)
Q Consensus 229 -l~~~i~~~l~~~~~~~~~~~~~~~~~--------~l~~~l~~kr~---LlVlDdv~~~--~~~~~~~~~~~~gs~iivT 294 (906)
.++.+...+..-. .....+.... .-..+++++.+ +||+|++.+. .+...+....+.+|++|+|
T Consensus 133 p~~~pi~D~L~~~~---~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 133 PYFRPVYDVLVRRL---GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHHHHHHHHHh---ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCEEEEe
Confidence 1112221111000 0001111100 01134566654 9999999764 5566666777789999998
Q ss_pred ecc
Q 002569 295 TRF 297 (906)
Q Consensus 295 tR~ 297 (906)
--.
T Consensus 210 GD~ 212 (262)
T PRK10536 210 GDI 212 (262)
T ss_pred CCh
Confidence 653
No 163
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=3.1e-05 Score=90.48 Aligned_cols=128 Identities=20% Similarity=0.251 Sum_probs=92.2
Q ss_pred ceeeeEEeccccCCC--CCC--CCCCCCCceEEEeecCCCccc-cccccCCCCceeEEEccCcccccccccccccccccc
Q 002569 515 WEIVRRLSLMRNSID--NLP--TVPTCPHLLTLFLNRNPLRTI-TGGFFQSMSCLTVLKMSDNETLRQLPMGISKLVSLQ 589 (906)
Q Consensus 515 ~~~lr~L~l~~~~~~--~l~--~~~~~~~Lr~L~l~~~~l~~~-~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~ 589 (906)
..++++|++.+...- ..| -...+|.|++|.+.+-.+..- -...+.++++|+.||+|++ +++.+ .++++|+||+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHH
Confidence 357899999875432 111 125689999999998653221 1233678999999999999 99999 5999999999
Q ss_pred eeecccCcccccC--hhhhCCCCCcEecccccccccc--cChhh---hcCCCCCceeecccc
Q 002569 590 LLDISKTSVVELP--EELKALVNLKCLNLDWAKELVV--VPQQL---LSNFSRLRVLRMFAI 644 (906)
Q Consensus 590 ~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~--lp~~~---i~~l~~L~~L~l~~~ 644 (906)
.|.+++=.+..-+ ..+.+|++|++||+|....... +.... -..|++|+.|+.+++
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 9999986666432 4678999999999987643221 11110 134899999999975
No 164
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.50 E-value=0.00098 Score=67.25 Aligned_cols=186 Identities=13% Similarity=0.197 Sum_probs=111.4
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEE-EEEEeCCcccHHHHHHHHHHHh
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSV-IWVVVSKDLQLEKIQETIGKKI 237 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~-~wv~~s~~~~~~~l~~~i~~~l 237 (906)
.+++|.+..+.-+.+.+... ..++...+|++|.|||+-|.+++... -...-|.+. +-.++|......-+-.
T Consensus 36 de~~gQe~vV~~L~~a~~~~-~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~------ 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR-ILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVRE------ 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc-CCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhh------
Confidence 45899999999999888874 78999999999999999999998887 333445433 3234444322210000
Q ss_pred CCCCCccccCCHHHHHHHHHHHh--ccCc-EEEEEccccch--hhhhhcCCc---CCCCcEEEEEeccc-ccccCC-Ccc
Q 002569 238 GLYTDSWKDRSLEEKAQDIFKTL--SKKK-FVLLLDDLWER--VDLKKVGVP---LPKNSAVVFTTRFV-DVCGGM-EAR 307 (906)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~~--~~~~~~~~~---~~~gs~iivTtR~~-~v~~~~-~~~ 307 (906)
...+...+........ ...+ -.+|||+++.. +.|..+... ++..++.|..+... .+.... +..
T Consensus 108 -------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 108 -------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred -------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhH
Confidence 0011111110000000 0123 47899999764 456665433 33355655544422 221111 223
Q ss_pred ceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCC-hHHHHHHHH
Q 002569 308 RKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGL-PLALITIGR 362 (906)
Q Consensus 308 ~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~-Plai~~~~~ 362 (906)
..|+.++|.+++...-++..+..+....+ .+..+.|++.++|. --|+.++-+
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdLR~Ait~Lqs 233 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDLRRAITTLQS 233 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 57899999999999988888876553333 67788999999985 445544433
No 165
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.50 E-value=0.00092 Score=70.22 Aligned_cols=129 Identities=11% Similarity=0.055 Sum_probs=67.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHhcc
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTLSK 262 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 262 (906)
-+.++|++|+||||+|+.++..... ........++.++. .++ ...+.. .+.......+.+ .
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~----~~l----~~~~~g-------~~~~~~~~~~~~-a-- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTR----DDL----VGQYIG-------HTAPKTKEILKR-A-- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecH----HHH----hHhhcc-------cchHHHHHHHHH-c--
Confidence 6889999999999999888777621 11111112444442 122 221111 111122222222 1
Q ss_pred CcEEEEEccccch-----------hhhhhcCCcC---CCCcEEEEEecccccccCC--------CccceEEeccCChHhH
Q 002569 263 KKFVLLLDDLWER-----------VDLKKVGVPL---PKNSAVVFTTRFVDVCGGM--------EARRKFKVECLSDEDA 320 (906)
Q Consensus 263 kr~LlVlDdv~~~-----------~~~~~~~~~~---~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~e~ 320 (906)
..-+|+||++... .....+...+ ..+.+||+++.....-..+ .-...+++++++.+|.
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 3358899998622 1112222222 1255666665432221100 0135689999999999
Q ss_pred HHHHHHHhcc
Q 002569 321 WELFREKVGE 330 (906)
Q Consensus 321 ~~Lf~~~a~~ 330 (906)
..++...+..
T Consensus 201 ~~I~~~~l~~ 210 (284)
T TIGR02880 201 LVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 166
>CHL00181 cbbX CbbX; Provisional
Probab=97.50 E-value=0.0015 Score=68.48 Aligned_cols=131 Identities=12% Similarity=0.112 Sum_probs=69.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHhc
Q 002569 182 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTLS 261 (906)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 261 (906)
..+.++|++|+||||+|+.++..... ...-...-|+.++. .++..... + .+.......+.+ .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~~----~~l~~~~~---g--------~~~~~~~~~l~~-a- 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVTR----DDLVGQYI---G--------HTAPKTKEVLKK-A- 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEecH----HHHHHHHh---c--------cchHHHHHHHHH-c-
Confidence 45889999999999999999887521 11111112444442 12221111 1 011111122222 1
Q ss_pred cCcEEEEEccccch-----------hhhhhcCCcC---CCCcEEEEEecccccccCC--------CccceEEeccCChHh
Q 002569 262 KKKFVLLLDDLWER-----------VDLKKVGVPL---PKNSAVVFTTRFVDVCGGM--------EARRKFKVECLSDED 319 (906)
Q Consensus 262 ~kr~LlVlDdv~~~-----------~~~~~~~~~~---~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~e 319 (906)
..-+|+||++... .....+...+ ..+.+||+++....+...+ .-...+.+++++.+|
T Consensus 122 -~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~e 200 (287)
T CHL00181 122 -MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEE 200 (287)
T ss_pred -cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence 2348999998542 1112222212 1245666766533221100 113478999999999
Q ss_pred HHHHHHHHhccc
Q 002569 320 AWELFREKVGEE 331 (906)
Q Consensus 320 ~~~Lf~~~a~~~ 331 (906)
..+++...+...
T Consensus 201 l~~I~~~~l~~~ 212 (287)
T CHL00181 201 LLQIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHHHHh
Confidence 999998887543
No 167
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.45 E-value=0.00046 Score=83.77 Aligned_cols=177 Identities=17% Similarity=0.222 Sum_probs=97.5
Q ss_pred cccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccC--CCCC-CEEEEEEeCCcccHHHHHHHHHHH
Q 002569 160 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN--PTDF-DSVIWVVVSKDLQLEKIQETIGKK 236 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f-~~~~wv~~s~~~~~~~l~~~i~~~ 236 (906)
.++||+++++++++.|... ...-+.++|++|+|||++|+.++...... .... +..+|. + +...++ .
T Consensus 180 ~~igr~~ei~~~~~~L~r~-~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a- 248 (821)
T CHL00095 180 PVIGREKEIERVIQILGRR-TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A- 248 (821)
T ss_pred CCCCcHHHHHHHHHHHccc-ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c-
Confidence 4799999999999999876 44456799999999999999999886311 1111 234442 1 121111 1
Q ss_pred hCCCCCccccCCHHHHHHHHHHHh-ccCcEEEEEccccchh---------hhhhcC-CcCCC-CcEEEEEeccccccc--
Q 002569 237 IGLYTDSWKDRSLEEKAQDIFKTL-SKKKFVLLLDDLWERV---------DLKKVG-VPLPK-NSAVVFTTRFVDVCG-- 302 (906)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~~~~-~~~~~-gs~iivTtR~~~v~~-- 302 (906)
+ .. ...+.++....+.+.+ ..++.+|++|++.... +...+. ..+.. .-++|.+|..++...
T Consensus 249 -g-~~---~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~i 323 (821)
T CHL00095 249 -G-TK---YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHI 323 (821)
T ss_pred -c-CC---CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHH
Confidence 1 00 1122333333343333 3468999999995321 122222 22223 345666665443211
Q ss_pred -----CCCccceEEeccCChHhHHHHHHHHhcccc-ccCCCCchHHHHHHHHHhCC
Q 002569 303 -----GMEARRKFKVECLSDEDAWELFREKVGEET-IESHHSIPELAQTVANECGG 352 (906)
Q Consensus 303 -----~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~-~~~~~~~~~~~~~i~~~c~G 352 (906)
.......+.+...+.++...++........ ...-.--.+....+++.++|
T Consensus 324 e~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~ 379 (821)
T CHL00095 324 EKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQ 379 (821)
T ss_pred hcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Confidence 112345678888999998888765432100 00000114556666666654
No 168
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.41 E-value=0.0012 Score=73.90 Aligned_cols=159 Identities=18% Similarity=0.220 Sum_probs=87.2
Q ss_pred cccchhHHHHHHHHHHhc------------CCCCeEEEEEcCCCCcHHHHHHHHHHhcccC--CCCCCEEEEEEeCCccc
Q 002569 160 TVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDN--PTDFDSVIWVVVSKDLQ 225 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~~~~wv~~s~~~~ 225 (906)
++.|.+..++++.+.+.- -...+-+.++|++|+|||++|+++++..... ...+....|+.+...
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~-- 260 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP-- 260 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch--
Confidence 467899999888887531 0245679999999999999999999987210 001223445544432
Q ss_pred HHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHH-hccCcEEEEEccccchh---------h-----hhhcCCc---CCC
Q 002569 226 LEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKT-LSKKKFVLLLDDLWERV---------D-----LKKVGVP---LPK 287 (906)
Q Consensus 226 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~---------~-----~~~~~~~---~~~ 287 (906)
++ +...... .......+....++. -.+++++|+||+++... + +..+... +..
T Consensus 261 --eL----l~kyvGe----te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 261 --EL----LNKYVGE----TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred --hh----cccccch----HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 11 1100000 000011111222221 12478999999996321 1 1112111 111
Q ss_pred --CcEEEEEecccccccC--C---CccceEEeccCChHhHHHHHHHHhcc
Q 002569 288 --NSAVVFTTRFVDVCGG--M---EARRKFKVECLSDEDAWELFREKVGE 330 (906)
Q Consensus 288 --gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~a~~ 330 (906)
+..||.||........ . .-...++++..+.++..++|..+...
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 4455556654433221 1 12346899999999999999988643
No 169
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0073 Score=63.93 Aligned_cols=174 Identities=11% Similarity=0.032 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCC-----
Q 002569 166 SQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLY----- 240 (906)
Q Consensus 166 ~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~----- 240 (906)
...+++...+..+.-...+.++|+.|+||+++|..++...- ......+- .... ...+..-..+
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~Ll-C~~~~~~~-------~c~~----c~~~~~g~HPD~~~i 78 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVL-ASGPDPAA-------AQRT----RQLIAAGTHPDLQLV 78 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHh-CCCCCCCC-------cchH----HHHHhcCCCCCEEEE
Confidence 44566667676663455799999999999999999887762 11111100 0000 0001100000
Q ss_pred ----CC-cc---ccCCHHHHHHHHHHHh-----ccCcEEEEEccccchh-----hhhhcCCcCCCCcEEEEEecc-cccc
Q 002569 241 ----TD-SW---KDRSLEEKAQDIFKTL-----SKKKFVLLLDDLWERV-----DLKKVGVPLPKNSAVVFTTRF-VDVC 301 (906)
Q Consensus 241 ----~~-~~---~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~-----~~~~~~~~~~~gs~iivTtR~-~~v~ 301 (906)
.. +. .....++ ++.+.+.+ .+++-++|||+++... .+-++..--+.++.+|++|.+ ..+.
T Consensus 79 ~~~p~~~~~k~~~~I~idq-IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lL 157 (319)
T PRK08769 79 SFIPNRTGDKLRTEIVIEQ-VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLP 157 (319)
T ss_pred ecCCCcccccccccccHHH-HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCc
Confidence 00 00 0011222 22333332 2456799999997542 222232333347766666654 3333
Q ss_pred cC-CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHH
Q 002569 302 GG-MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIG 361 (906)
Q Consensus 302 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~ 361 (906)
.. .+....+.+.+++.+++.+.+... +.. .+.+..++..++|.|+.+..+.
T Consensus 158 pTIrSRCq~i~~~~~~~~~~~~~L~~~-~~~--------~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 158 ATIRSRCQRLEFKLPPAHEALAWLLAQ-GVS--------ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hHHHhhheEeeCCCcCHHHHHHHHHHc-CCC--------hHHHHHHHHHcCCCHHHHHHHh
Confidence 22 233567899999999999888654 211 3346778999999998765443
No 170
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.38 E-value=0.0014 Score=70.61 Aligned_cols=146 Identities=21% Similarity=0.235 Sum_probs=88.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCC--EEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD--SVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIF 257 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 257 (906)
....+.|+|..|.|||.|++++.+... .... .+++++ .+....+++..+.- .-...++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~---~~~~~a~v~y~~------se~f~~~~v~a~~~-----------~~~~~Fk 171 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEAL---ANGPNARVVYLT------SEDFTNDFVKALRD-----------NEMEKFK 171 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHH---hhCCCceEEecc------HHHHHHHHHHHHHh-----------hhHHHHH
Confidence 478999999999999999999999982 3444 344442 33344444433321 1223344
Q ss_pred HHhccCcEEEEEccccch---hhh-hhcC---CcCCC-CcEEEEEeccc---------ccccCCCccceEEeccCChHhH
Q 002569 258 KTLSKKKFVLLLDDLWER---VDL-KKVG---VPLPK-NSAVVFTTRFV---------DVCGGMEARRKFKVECLSDEDA 320 (906)
Q Consensus 258 ~~l~~kr~LlVlDdv~~~---~~~-~~~~---~~~~~-gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~ 320 (906)
+.. .-=++++||++-. ..+ +++. ..+.. |..||+|++.. ++.+.+...-.+++.+.+.+..
T Consensus 172 ~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 172 EKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETR 249 (408)
T ss_pred Hhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHH
Confidence 444 3338999999642 111 1221 22222 66899999643 2234445667899999999999
Q ss_pred HHHHHHHhccccccCCCCchHHHHHHHHHh
Q 002569 321 WELFREKVGEETIESHHSIPELAQTVANEC 350 (906)
Q Consensus 321 ~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c 350 (906)
...+.+++.......+ .++..-|++..
T Consensus 250 ~aiL~kka~~~~~~i~---~ev~~~la~~~ 276 (408)
T COG0593 250 LAILRKKAEDRGIEIP---DEVLEFLAKRL 276 (408)
T ss_pred HHHHHHHHHhcCCCCC---HHHHHHHHHHh
Confidence 9999998765543333 34444444443
No 171
>PRK08116 hypothetical protein; Validated
Probab=97.36 E-value=0.00039 Score=72.17 Aligned_cols=98 Identities=24% Similarity=0.293 Sum_probs=57.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHh
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTL 260 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 260 (906)
...+.++|..|+|||+||.++++... .....++|++ ..+++..+....... ...+..+ +.+.+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~----~~~~~~~----~~~~l 176 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSS----GKEDENE----IIRSL 176 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhcc----ccccHHH----HHHHh
Confidence 34689999999999999999999983 2234566664 445666665554321 1112222 23334
Q ss_pred ccCcEEEEEccccc--hhhhhh-----cCCc-CCCCcEEEEEec
Q 002569 261 SKKKFVLLLDDLWE--RVDLKK-----VGVP-LPKNSAVVFTTR 296 (906)
Q Consensus 261 ~~kr~LlVlDdv~~--~~~~~~-----~~~~-~~~gs~iivTtR 296 (906)
.+-. ||||||+.. ..+|.. +... ...+..+||||.
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN 219 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTN 219 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 4333 899999942 222321 1111 122677999986
No 172
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.34 E-value=3.1e-05 Score=68.00 Aligned_cols=91 Identities=24% Similarity=0.331 Sum_probs=80.9
Q ss_pred cceeeeEEeccccCCCCCCC--CCCCCCceEEEeecCCCccccccccCCCCceeEEEccCccccccccccccccccccee
Q 002569 514 GWEIVRRLSLMRNSIDNLPT--VPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPMGISKLVSLQLL 591 (906)
Q Consensus 514 ~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L 591 (906)
...++..+++++|.+..+|. ...++.+++|++.+|.+..+|.. +..++.|+.|+++.| .+...|.-|..|.+|-+|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHh
Confidence 34568888999999999983 35678999999999999999998 899999999999999 899999999999999999
Q ss_pred ecccCcccccChhhh
Q 002569 592 DISKTSVVELPEELK 606 (906)
Q Consensus 592 ~L~~~~i~~lp~~i~ 606 (906)
+..+|.+.++|-.+-
T Consensus 129 ds~~na~~eid~dl~ 143 (177)
T KOG4579|consen 129 DSPENARAEIDVDLF 143 (177)
T ss_pred cCCCCccccCcHHHh
Confidence 999999999987743
No 173
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.33 E-value=0.0016 Score=78.97 Aligned_cols=152 Identities=19% Similarity=0.248 Sum_probs=86.2
Q ss_pred cccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccC--CCC-CC-EEEEEEeCCcccHHHHHHHHHH
Q 002569 160 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN--PTD-FD-SVIWVVVSKDLQLEKIQETIGK 235 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~-f~-~~~wv~~s~~~~~~~l~~~i~~ 235 (906)
.++||+.++.++++.|... ...-+.++|++|+||||+|+.+....... ... .. .++++..+. +. .
T Consensus 179 ~vigr~~ei~~~i~iL~r~-~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~----a 247 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRR-TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV----A 247 (857)
T ss_pred cCCCCHHHHHHHHHHHhcC-CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hh----h
Confidence 4899999999999999876 55566799999999999999999987210 000 12 223332221 11 0
Q ss_pred HhCCCCCccccCCHHHHHHHHHHHh--ccCcEEEEEccccchh---------hhhhcC-CcCCCC-cEEEEEeccccccc
Q 002569 236 KIGLYTDSWKDRSLEEKAQDIFKTL--SKKKFVLLLDDLWERV---------DLKKVG-VPLPKN-SAVVFTTRFVDVCG 302 (906)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~---------~~~~~~-~~~~~g-s~iivTtR~~~v~~ 302 (906)
... .....++....+.+.+ .+++.+|++|++.... +...+. ..+..| -++|-||...+...
T Consensus 248 g~~------~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~ 321 (857)
T PRK10865 248 GAK------YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQ 321 (857)
T ss_pred ccc------hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHH
Confidence 000 1112223333332222 2468999999986432 122332 223333 45555555433210
Q ss_pred -------CCCccceEEeccCChHhHHHHHHHHh
Q 002569 303 -------GMEARRKFKVECLSDEDAWELFREKV 328 (906)
Q Consensus 303 -------~~~~~~~~~l~~L~~~e~~~Lf~~~a 328 (906)
.......+.+..-+.++...++....
T Consensus 322 ~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 322 YIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 01123356677778899999886654
No 174
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.32 E-value=0.0025 Score=77.78 Aligned_cols=152 Identities=16% Similarity=0.233 Sum_probs=87.4
Q ss_pred cccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCC----CCEEEE-EEeCCcccHHHHHHHHH
Q 002569 160 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD----FDSVIW-VVVSKDLQLEKIQETIG 234 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~w-v~~s~~~~~~~l~~~i~ 234 (906)
.++||+.++++++..|... ...-+.++|++|+|||++|+.++.+... ... ....+| +.+ ..+.
T Consensus 174 ~~igr~~ei~~~~~~l~r~-~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~~p~~l~~~~~~~l~~------~~l~---- 241 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRR-TKNNPVLIGEPGVGKTAIVEGLAQRIVN-GDVPESLKNKRLLALDM------GALI---- 241 (852)
T ss_pred cCCCcHHHHHHHHHHHhcC-CCCceEEEcCCCCCHHHHHHHHHHHHhc-cCCchhhcCCeEEEeeH------HHHh----
Confidence 4899999999999999876 4456668999999999999999988621 110 122222 221 1111
Q ss_pred HHhCCCCCccccCCHHHHHHHHHHHhc--cCcEEEEEccccchh---------hhhhc-CCcCCCC-cEEEEEecccccc
Q 002569 235 KKIGLYTDSWKDRSLEEKAQDIFKTLS--KKKFVLLLDDLWERV---------DLKKV-GVPLPKN-SAVVFTTRFVDVC 301 (906)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~---------~~~~~-~~~~~~g-s~iivTtR~~~v~ 301 (906)
. +.. ...+.+.....+...+. +++.+|++|++.... +...+ ...+..| -++|.+|..+..-
T Consensus 242 a--~~~----~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 242 A--GAK----YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYR 315 (852)
T ss_pred h--cch----hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHH
Confidence 0 000 11122333333333332 468999999986431 12222 2223233 3555555433321
Q ss_pred c-------CCCccceEEeccCChHhHHHHHHHHhc
Q 002569 302 G-------GMEARRKFKVECLSDEDAWELFREKVG 329 (906)
Q Consensus 302 ~-------~~~~~~~~~l~~L~~~e~~~Lf~~~a~ 329 (906)
. .......+.++..+.++...++.....
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~ 350 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLKE 350 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHH
Confidence 1 112235688999999999998876643
No 175
>PRK08118 topology modulation protein; Reviewed
Probab=97.30 E-value=0.00018 Score=69.05 Aligned_cols=36 Identities=36% Similarity=0.571 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEE
Q 002569 182 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIW 217 (906)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 217 (906)
+.|.|+|++|+||||||+.+++...-...+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999997322356777776
No 176
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.26 E-value=0.0035 Score=71.83 Aligned_cols=173 Identities=15% Similarity=0.152 Sum_probs=93.7
Q ss_pred cccchhHHHHHHHHHHh---c--------CCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHH
Q 002569 160 TVVGLQSQLEQVWRCLV---Q--------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEK 228 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~---~--------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 228 (906)
+++|.+..++++.+.+. . ....+-+.++|++|+|||++|+.++... . ..| +.++. .+
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-~--~~~-----~~i~~----~~ 123 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-G--VPF-----FSISG----SD 123 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-C--CCe-----eeccH----HH
Confidence 47888877666655442 1 1234568999999999999999999876 2 222 22221 11
Q ss_pred HHHHHHHHhCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccchh------------h----hhhcCCc---CC-C-
Q 002569 229 IQETIGKKIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWERV------------D----LKKVGVP---LP-K- 287 (906)
Q Consensus 229 l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~----~~~~~~~---~~-~- 287 (906)
+. ... .......+...+.......+.+|+|||++... . +..+... +. .
T Consensus 124 ~~----~~~-------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 124 FV----EMF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HH----HHH-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 11 111 01122223333333344567899999985421 0 1111111 11 1
Q ss_pred CcEEEEEeccccccc-----CCCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCC-hHHHHH
Q 002569 288 NSAVVFTTRFVDVCG-----GMEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGL-PLALIT 359 (906)
Q Consensus 288 gs~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~-Plai~~ 359 (906)
+..||.||....... ...-...+.++..+.++-.++|..++....... ......+++.+.|. +--|..
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~----~~~l~~la~~t~G~sgadl~~ 266 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP----DVDLKAVARRTPGFSGADLAN 266 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc----chhHHHHHHhCCCCCHHHHHH
Confidence 445666665433211 111235688888888888888888765433111 22345788888874 333333
No 177
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.26 E-value=0.00028 Score=66.62 Aligned_cols=102 Identities=23% Similarity=0.304 Sum_probs=51.4
Q ss_pred eeEEEccCcccccccccccccccccceeecccCcccccChhh-hCCCCCcEeccccccccccc---ChhhhcCCCCCcee
Q 002569 564 LTVLKMSDNETLRQLPMGISKLVSLQLLDISKTSVVELPEEL-KALVNLKCLNLDWAKELVVV---PQQLLSNFSRLRVL 639 (906)
Q Consensus 564 L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~~l~~l---p~~~i~~l~~L~~L 639 (906)
...+||++| .+..++ .+..++.|.+|.|.+|+|+.+-..+ ..+++|+.|.+.+| ++..+ .+ +..|++|++|
T Consensus 44 ~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~p--La~~p~L~~L 118 (233)
T KOG1644|consen 44 FDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDP--LASCPKLEYL 118 (233)
T ss_pred cceeccccc-chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcch--hccCCcccee
Confidence 344555555 555544 4555555666666666666553222 33445666666655 23322 22 4456666666
Q ss_pred ecccccccCCCCCCCccccccHHhhcCCCCccEEEEEE
Q 002569 640 RMFAIGVRSPYGLSSSWHENVAEELLGLKYLEVLEITF 677 (906)
Q Consensus 640 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 677 (906)
.+.+|.... ....-.-.+..+++|++||...
T Consensus 119 tll~Npv~~-------k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEH-------KKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhc-------ccCceeEEEEecCcceEeehhh
Confidence 666553222 1111122345667777776553
No 178
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.22 E-value=0.0012 Score=78.02 Aligned_cols=153 Identities=19% Similarity=0.284 Sum_probs=88.2
Q ss_pred cccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCC---CCEEEEEEeCCcccHHHHHHHHHHH
Q 002569 160 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD---FDSVIWVVVSKDLQLEKIQETIGKK 236 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~s~~~~~~~l~~~i~~~ 236 (906)
.++||+.+++++++.|... ...-+.++|++|+|||++|+.++.......-. .++.+|.. +...+ +.
T Consensus 187 ~liGR~~ei~~~i~iL~r~-~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la- 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRR-RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA- 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhcc-CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc-
Confidence 4899999999999999875 44555789999999999999999875221111 23444421 11111 11
Q ss_pred hCCCCCccccCCHHHHHHHHHHHh-ccCcEEEEEccccch----------hhhhhcCCc-CCCC-cEEEEEeccccccc-
Q 002569 237 IGLYTDSWKDRSLEEKAQDIFKTL-SKKKFVLLLDDLWER----------VDLKKVGVP-LPKN-SAVVFTTRFVDVCG- 302 (906)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~----------~~~~~~~~~-~~~g-s~iivTtR~~~v~~- 302 (906)
+.. ...+.++....+.+.+ +.++.+|++|++... .+...+..+ +..| -++|-+|...+...
T Consensus 256 -G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~ 330 (758)
T PRK11034 256 -GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNI 330 (758)
T ss_pred -ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHH
Confidence 000 1112333333333333 346789999999632 122222222 2233 34555554333211
Q ss_pred ------CCCccceEEeccCChHhHHHHHHHHh
Q 002569 303 ------GMEARRKFKVECLSDEDAWELFREKV 328 (906)
Q Consensus 303 ------~~~~~~~~~l~~L~~~e~~~Lf~~~a 328 (906)
.......+.++..+.+++.+++....
T Consensus 331 ~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 01123578999999999999998764
No 179
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.018 Score=61.05 Aligned_cols=175 Identities=11% Similarity=0.062 Sum_probs=94.9
Q ss_pred HHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC-----CCC
Q 002569 167 QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG-----LYT 241 (906)
Q Consensus 167 ~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~-----~~~ 241 (906)
..+.+.+.+..+.-...+.+.|+.|+||+++|+.++...- ...... ...++.-..-+.+...-. +..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~ll-C~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLM-CQTPQG-------DQPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHc-CCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 4456666666653457888999999999999999988762 111110 001111111111111000 000
Q ss_pred CccccCCHHHHHHHHHHHh-----ccCcEEEEEccccchh--h---hhhcCCcCCCCcEEEEEeccc-ccccC-CCccce
Q 002569 242 DSWKDRSLEEKAQDIFKTL-----SKKKFVLLLDDLWERV--D---LKKVGVPLPKNSAVVFTTRFV-DVCGG-MEARRK 309 (906)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~--~---~~~~~~~~~~gs~iivTtR~~-~v~~~-~~~~~~ 309 (906)
..-.....++.. .+.+.+ .+++-++|+|+++... . +-+...-.+.++.+|++|.+. .+... .+....
T Consensus 82 ~~~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 82 IDNKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred ccCCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 000111233332 233322 3556688899997542 2 222223333466766666543 44322 233568
Q ss_pred EEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHH
Q 002569 310 FKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALI 358 (906)
Q Consensus 310 ~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~ 358 (906)
+.+.+++++++.+.+....... ...+...+..++|.|..+.
T Consensus 161 ~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLAL 201 (325)
T ss_pred EeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHHH
Confidence 9999999999999888764321 2235667889999997443
No 180
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.012 Score=63.34 Aligned_cols=159 Identities=8% Similarity=-0.018 Sum_probs=83.9
Q ss_pred ccc-hhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCC
Q 002569 161 VVG-LQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGL 239 (906)
Q Consensus 161 ~vg-r~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~ 239 (906)
++| -+..++.+...+..+.-.+...++|+.|+||||+|+.+.+... ........ .++.-..-+.+...-..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~-c~~~~~~~-------~cg~C~~c~~~~~~~hp 78 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLF-CLERNGVE-------PCGTCTNCKRIDSGNHP 78 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHC-CCCCCCCC-------CCCcCHHHHHHhcCCCC
Confidence 567 6677788888877663456779999999999999999988762 11101000 00000000111000000
Q ss_pred C----CCccccCCHHHHHHHHHHH----hccCcEEEEEccccchh--h---hhhcCCcCCCCcEEEEEeccc-ccccC-C
Q 002569 240 Y----TDSWKDRSLEEKAQDIFKT----LSKKKFVLLLDDLWERV--D---LKKVGVPLPKNSAVVFTTRFV-DVCGG-M 304 (906)
Q Consensus 240 ~----~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~--~---~~~~~~~~~~gs~iivTtR~~-~v~~~-~ 304 (906)
+ ...-.....+++.+.+... ..+++-++|+|++.... . +.+...-.+.++.+|++|.+. .+... .
T Consensus 79 D~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIr 158 (329)
T PRK08058 79 DVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTIL 158 (329)
T ss_pred CEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHH
Confidence 0 0000111222222222111 23456689999986532 2 222333334477777776543 33221 2
Q ss_pred CccceEEeccCChHhHHHHHHHH
Q 002569 305 EARRKFKVECLSDEDAWELFREK 327 (906)
Q Consensus 305 ~~~~~~~l~~L~~~e~~~Lf~~~ 327 (906)
+....+++.+++.++..+.+...
T Consensus 159 SRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 159 SRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred hhceeeeCCCCCHHHHHHHHHHc
Confidence 34568999999999998888653
No 181
>PRK07261 topology modulation protein; Provisional
Probab=97.19 E-value=0.001 Score=64.12 Aligned_cols=67 Identities=22% Similarity=0.429 Sum_probs=43.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHhcc
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTLSK 262 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 262 (906)
.|.|+|++|+||||||+.+.....-..-+.|...|-.. +...+.++....+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhC
Confidence 48999999999999999998775211123444444211 1233445566666666766
Q ss_pred CcEEEEEccccc
Q 002569 263 KKFVLLLDDLWE 274 (906)
Q Consensus 263 kr~LlVlDdv~~ 274 (906)
.+ .|+|+...
T Consensus 59 ~~--wIidg~~~ 68 (171)
T PRK07261 59 HD--WIIDGNYS 68 (171)
T ss_pred CC--EEEcCcch
Confidence 66 68888754
No 182
>CHL00176 ftsH cell division protein; Validated
Probab=97.19 E-value=0.0051 Score=71.58 Aligned_cols=168 Identities=14% Similarity=0.182 Sum_probs=94.2
Q ss_pred CcccchhHHHHHHHHHH---hcC--------CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHH
Q 002569 159 PTVVGLQSQLEQVWRCL---VQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLE 227 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L---~~~--------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 227 (906)
.++.|.++.++++.+.+ ... ...+-|.++|++|+|||++|++++... . .. |+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~-~--~p-----~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-E--VP-----FFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-C--CC-----eeeccHH----
Confidence 34788877666655443 321 124579999999999999999999876 1 12 2322211
Q ss_pred HHHHHHHHHhCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccchh----------------hhhhcCCc---C-CC
Q 002569 228 KIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWERV----------------DLKKVGVP---L-PK 287 (906)
Q Consensus 228 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~~~~~---~-~~ 287 (906)
++. ... .......+...+.......+.+|+|||++... .+..+... + ..
T Consensus 251 ~f~----~~~-------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFV----EMF-------VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHH----HHh-------hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 111 000 00111222333444445678999999995320 11222111 1 11
Q ss_pred -CcEEEEEecccccccC--C---CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCC
Q 002569 288 -NSAVVFTTRFVDVCGG--M---EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGL 353 (906)
Q Consensus 288 -gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~ 353 (906)
+..||.||........ . .-...+.+...+.++-.++++.++...... .......+++.+.|.
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~----~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS----PDVSLELIARRTPGF 387 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc----hhHHHHHHHhcCCCC
Confidence 5566667765433221 1 123577888889999999998887653211 133456778888773
No 183
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.024 Score=58.91 Aligned_cols=193 Identities=18% Similarity=0.251 Sum_probs=110.9
Q ss_pred cccchhHHHHHHHHHHhcC------------CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHH
Q 002569 160 TVVGLQSQLEQVWRCLVQE------------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLE 227 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 227 (906)
++=|-++.+++|.+...-. ..++-|..+|++|.|||-||++|++.- ...| +.|...
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----IrvvgS---- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVGS---- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEeccH----
Confidence 3567888888888876321 357889999999999999999999986 2333 433322
Q ss_pred HHHHHHHHHhCCCCCccccCCHHHHHHHHHHHhc-cCcEEEEEccccch------------hh----hhhcC---CcCCC
Q 002569 228 KIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTLS-KKKFVLLLDDLWER------------VD----LKKVG---VPLPK 287 (906)
Q Consensus 228 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~------------~~----~~~~~---~~~~~ 287 (906)
++ .+..-. .-..+.+.+.+.-+ +.+.+|.+|.++.. .+ +-++. .-|..
T Consensus 220 El----VqKYiG--------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 220 EL----VQKYIG--------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred HH----HHHHhc--------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 11 111111 11233444444444 46899999988532 00 11111 12222
Q ss_pred --CcEEEEEecccccccC--C---CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCCh----HH
Q 002569 288 --NSAVVFTTRFVDVCGG--M---EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLP----LA 356 (906)
Q Consensus 288 --gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~P----la 356 (906)
..|||.+|...++... + .-.+.++++.=+.+.=.++|+-++..-....+-++ +.+++.|.|.- -|
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAdlka 363 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGADLKA 363 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchHHHHH
Confidence 7799998887666432 1 12456777755555555677777765543333344 45566666654 45
Q ss_pred HHHHHHHhhcC--C---CHHHHHHHHHHH
Q 002569 357 LITIGRAMAYK--K---TPEEWRYAIEVL 380 (906)
Q Consensus 357 i~~~~~~l~~~--~---~~~~w~~~~~~l 380 (906)
+.+=|++++-+ + +.+++..+.+..
T Consensus 364 ictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 364 ICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 55666666532 2 455565555443
No 184
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.0021 Score=71.50 Aligned_cols=185 Identities=15% Similarity=0.166 Sum_probs=110.7
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG 238 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 238 (906)
++++|-+.-...|...+..+.-.......|+-|+||||+|+.++..+. .... ....+++.-..-++|...-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalN-C~~~-------~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALN-CENG-------PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhc-CCCC-------CCCCcchhhhhhHhhhcCCc
Confidence 357999999999999998774567788999999999999999988772 1110 11122222222233332200
Q ss_pred CCC---CccccCCHHHHHHHHHHHh-----ccCcEEEEEccccc--hhhhhhcCCcC---CCCcEEEEEeccc-cc-ccC
Q 002569 239 LYT---DSWKDRSLEEKAQDIFKTL-----SKKKFVLLLDDLWE--RVDLKKVGVPL---PKNSAVVFTTRFV-DV-CGG 303 (906)
Q Consensus 239 ~~~---~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~--~~~~~~~~~~~---~~gs~iivTtR~~-~v-~~~ 303 (906)
.+. +.......++. +.|.+.. ++|.=+.|+|.|.- ...|..+...+ |.....|++|++. .+ ...
T Consensus 88 ~DviEiDaASn~gVddi-R~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 88 IDVIEIDAASNTGVDDI-REIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred ccchhhhhhhccChHHH-HHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhh
Confidence 000 00011222222 2333322 34555899999963 34555554333 2366666655543 33 223
Q ss_pred CCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChH
Q 002569 304 MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPL 355 (906)
Q Consensus 304 ~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Pl 355 (906)
.+..+.|.++.++.++....+...+..+..... .+...-|++..+|..-
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSLR 215 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCChh
Confidence 355678999999999999999888876653333 5666777777777543
No 185
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.18 E-value=0.025 Score=60.97 Aligned_cols=198 Identities=15% Similarity=0.175 Sum_probs=121.6
Q ss_pred hhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHH-HHHHHhcccCCCCCCEEEEEEeCCc---ccHHHHHHHHHHHhCC
Q 002569 164 LQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLL-TQINNKFVDNPTDFDSVIWVVVSKD---LQLEKIQETIGKKIGL 239 (906)
Q Consensus 164 r~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~s~~---~~~~~l~~~i~~~l~~ 239 (906)
|.+..++|..||... .-.+|.|.|+-|+||+.|+ .++..+. +.++.++|.+- .+-..+...++.++|-
T Consensus 1 R~e~~~~L~~wL~e~-~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN-PNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcC-CCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 567789999999886 5679999999999999999 6666653 22788876542 2334455555555432
Q ss_pred -----------------------CCCccccCCHHHHHHHH-------HH-------------------Hhc---cCcEEE
Q 002569 240 -----------------------YTDSWKDRSLEEKAQDI-------FK-------------------TLS---KKKFVL 267 (906)
Q Consensus 240 -----------------------~~~~~~~~~~~~~~~~l-------~~-------------------~l~---~kr~Ll 267 (906)
...++......++...+ ++ ++. .+|=+|
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 11112222233332221 11 000 125689
Q ss_pred EEccccch-----------hhhhhcCCcCCCCcEEEEEecccccccC----C--CccceEEeccCChHhHHHHHHHHhcc
Q 002569 268 LLDDLWER-----------VDLKKVGVPLPKNSAVVFTTRFVDVCGG----M--EARRKFKVECLSDEDAWELFREKVGE 330 (906)
Q Consensus 268 VlDdv~~~-----------~~~~~~~~~~~~gs~iivTtR~~~v~~~----~--~~~~~~~l~~L~~~e~~~Lf~~~a~~ 330 (906)
|+|+.-.. .+|...... .+-..||++|-+...... + .....+.|.-.+++.|.++...+...
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDE 231 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcc
Confidence 99997432 234332111 114678888876555332 2 23567899999999999999998865
Q ss_pred cccc------------CC-----CCchHHHHHHHHHhCCChHHHHHHHHHhhcCCCH
Q 002569 331 ETIE------------SH-----HSIPELAQTVANECGGLPLALITIGRAMAYKKTP 370 (906)
Q Consensus 331 ~~~~------------~~-----~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~ 370 (906)
.... .. ....+-....++..||-=.=+..+++.++...++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 232 DTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 3110 00 1234445667788888888888888888776544
No 186
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=3.6e-05 Score=75.75 Aligned_cols=101 Identities=26% Similarity=0.226 Sum_probs=69.6
Q ss_pred CCCceEEEeecCCCccccccccCCCCceeEEEccCcccccccccccccccccceeecccCcccccC--hhhhCCCCCcEe
Q 002569 537 CPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPMGISKLVSLQLLDISKTSVVELP--EELKALVNLKCL 614 (906)
Q Consensus 537 ~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L 614 (906)
+.+.+.|++.+|.++++.- ...|+.|++|.||-| .|+.+. .+..+.+|+.|.|+.|.|..+- .-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHHH--HHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 4456667777777766643 567888888888888 777775 5777788888888888777653 345677788888
Q ss_pred cccccccccccCh----hhhcCCCCCceeec
Q 002569 615 NLDWAKELVVVPQ----QLLSNFSRLRVLRM 641 (906)
Q Consensus 615 ~l~~~~~l~~lp~----~~i~~l~~L~~L~l 641 (906)
.|..|+....-+. .++.-|++|+.|+-
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccC
Confidence 8777755444332 23555677777753
No 187
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=3.2e-05 Score=76.10 Aligned_cols=106 Identities=21% Similarity=0.200 Sum_probs=81.8
Q ss_pred CCCceeEEEccCcccccccccccccccccceeecccCcccccChhhhCCCCCcEecccccccccccCh-hhhcCCCCCce
Q 002569 560 SMSCLTVLKMSDNETLRQLPMGISKLVSLQLLDISKTSVVELPEELKALVNLKCLNLDWAKELVVVPQ-QLLSNFSRLRV 638 (906)
Q Consensus 560 ~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~ 638 (906)
.+.+.+.|++.|| .+.++. -+.+|+.|++|.|+-|+|++| ..+..+++|+.|+|+.| .+..+.+ ..+.++++|+.
T Consensus 17 dl~~vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCC-CccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhh
Confidence 3567788999999 888875 567899999999999999999 57889999999999998 5666654 22578999999
Q ss_pred eecccccccCCCCCCCccccccHHhhcCCCCccEEE
Q 002569 639 LRMFAIGVRSPYGLSSSWHENVAEELLGLKYLEVLE 674 (906)
Q Consensus 639 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 674 (906)
|.+..|...+..+ ...-...|..|++|++|+
T Consensus 93 LWL~ENPCc~~ag-----~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAG-----QNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccc-----hhHHHHHHHHcccchhcc
Confidence 9998875444222 122345577788888876
No 188
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0059 Score=67.26 Aligned_cols=92 Identities=18% Similarity=0.268 Sum_probs=63.8
Q ss_pred cccchhHHHHHHHHHHhc---C--------CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHH
Q 002569 160 TVVGLQSQLEQVWRCLVQ---E--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEK 228 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~---~--------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 228 (906)
++=|.++.+.++.+.+.. . ...+-|.++|++|+|||.||+++++.. . +-++.++.+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~-------vPf~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-G-------VPFLSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-C-------CceEeecch-----
Confidence 467889888888887642 1 246778999999999999999999998 2 223444433
Q ss_pred HHHHHHHHhCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccc
Q 002569 229 IQETIGKKIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWE 274 (906)
Q Consensus 229 l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 274 (906)
+|+... ...+++.+.+.+.+.-..-++++++|+++-
T Consensus 258 ---eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 222221 234555555556666677899999999863
No 189
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.16 E-value=0.021 Score=69.20 Aligned_cols=47 Identities=30% Similarity=0.373 Sum_probs=38.8
Q ss_pred CcccchhHHHHHHHHHHhc-----CCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 159 PTVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.+++|.+..+++|.+++.. ....+++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999887642 2244689999999999999999999987
No 190
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.15 E-value=0.0016 Score=60.70 Aligned_cols=88 Identities=24% Similarity=0.118 Sum_probs=50.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHh
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTL 260 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 260 (906)
...+.|+|++|+||||+++.++.... .....++++..+........... ....... ............+.+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG---PPGGGVIYIDGEDILEEVLDQLL-LIIVGGK---KASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC---CCCCCEEEECCEEccccCHHHHH-hhhhhcc---CCCCCHHHHHHHHHHHH
Confidence 36789999999999999999999872 22234566655443322222111 0111110 02223333344444444
Q ss_pred ccCc-EEEEEccccch
Q 002569 261 SKKK-FVLLLDDLWER 275 (906)
Q Consensus 261 ~~kr-~LlVlDdv~~~ 275 (906)
...+ .++++|++...
T Consensus 75 ~~~~~~viiiDei~~~ 90 (148)
T smart00382 75 RKLKPDVLILDEITSL 90 (148)
T ss_pred HhcCCCEEEEECCccc
Confidence 4444 89999999764
No 191
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.12 E-value=0.003 Score=67.31 Aligned_cols=106 Identities=17% Similarity=0.137 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCE-EEEEEeCCc-ccHHHHHHHHHHHhCCCCCcc
Q 002569 167 QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDS-VIWVVVSKD-LQLEKIQETIGKKIGLYTDSW 244 (906)
Q Consensus 167 ~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~~ 244 (906)
...++++.+..-+.-.-+.|+|..|+|||||++.+++... ..+-+. ++|+.+.+. .++.++.+.+...+.....+.
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 3455777776522445679999999999999999998773 223343 466666654 467888888887766433110
Q ss_pred ccCC---HHHHHHHHHHHh--ccCcEEEEEccccc
Q 002569 245 KDRS---LEEKAQDIFKTL--SKKKFVLLLDDLWE 274 (906)
Q Consensus 245 ~~~~---~~~~~~~l~~~l--~~kr~LlVlDdv~~ 274 (906)
.... .......+.+++ .+++++||+|++..
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1111 111111222222 47899999999853
No 192
>PRK12377 putative replication protein; Provisional
Probab=97.11 E-value=0.002 Score=65.56 Aligned_cols=74 Identities=26% Similarity=0.313 Sum_probs=46.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKT 259 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 259 (906)
....+.++|..|+|||+||.++++... .....++++++. +++..+-..... ..+... +.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~------~l~~~l~~~~~~------~~~~~~----~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVP------DVMSRLHESYDN------GQSGEK----FLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHH------HHHHHHHHHHhc------cchHHH----HHHH
Confidence 346899999999999999999999983 233445666543 455555443321 111222 2222
Q ss_pred hccCcEEEEEcccc
Q 002569 260 LSKKKFVLLLDDLW 273 (906)
Q Consensus 260 l~~kr~LlVlDdv~ 273 (906)
+ .+--||||||+.
T Consensus 161 l-~~~dLLiIDDlg 173 (248)
T PRK12377 161 L-CKVDLLVLDEIG 173 (248)
T ss_pred h-cCCCEEEEcCCC
Confidence 2 345699999994
No 193
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.10 E-value=0.002 Score=63.00 Aligned_cols=127 Identities=16% Similarity=0.198 Sum_probs=67.6
Q ss_pred chhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCC----c--ccHHHH-------
Q 002569 163 GLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSK----D--LQLEKI------- 229 (906)
Q Consensus 163 gr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~----~--~~~~~l------- 229 (906)
.+..+....++.|.+ ..++.+.|++|.|||.||.+.+-+. -..+.++.++++.-.- . +-+-++
T Consensus 4 p~~~~Q~~~~~al~~---~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 4 PKNEEQKFALDALLN---NDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp --SHHHHHHHHHHHH----SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCCHHHHHHHHHHHh---CCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 345566677777773 4799999999999999999888766 2347888888875211 1 001111
Q ss_pred HHHHHHHhCCCCCccccCCHHHHHHHH------HHHhccC---cEEEEEccccc--hhhhhhcCCcCCCCcEEEEEec
Q 002569 230 QETIGKKIGLYTDSWKDRSLEEKAQDI------FKTLSKK---KFVLLLDDLWE--RVDLKKVGVPLPKNSAVVFTTR 296 (906)
Q Consensus 230 ~~~i~~~l~~~~~~~~~~~~~~~~~~l------~~~l~~k---r~LlVlDdv~~--~~~~~~~~~~~~~gs~iivTtR 296 (906)
+..+...+..-. .....+.+.+.= ..+++|+ ..+||+|++.+ ..++..+....+.|||||++--
T Consensus 80 ~~p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD 154 (205)
T PF02562_consen 80 LRPIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRIGEGSKIIITGD 154 (205)
T ss_dssp THHHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE-
T ss_pred HHHHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcccCCCcEEEEecC
Confidence 111121211100 112222222110 1233443 46999999976 4678888888888999999875
No 194
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.00016 Score=71.99 Aligned_cols=202 Identities=17% Similarity=0.152 Sum_probs=107.4
Q ss_pred EEeccccCCCCCCCC----CCCCCceEEEeecCCCccccc--cccCCCCceeEEEccCccccccccccc-ccccccceee
Q 002569 520 RLSLMRNSIDNLPTV----PTCPHLLTLFLNRNPLRTITG--GFFQSMSCLTVLKMSDNETLRQLPMGI-SKLVSLQLLD 592 (906)
Q Consensus 520 ~L~l~~~~~~~l~~~----~~~~~Lr~L~l~~~~l~~~~~--~~~~~l~~L~~L~Ls~~~~i~~lp~~i-~~L~~L~~L~ 592 (906)
-+.+.++.+.+...+ ..+.+++.|+|-+|.+++... .++.+|++|++|+|+.| .+...-.+. -.+.+|++|-
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lV 127 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLV 127 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEE
Confidence 444545555543322 457788888888888655432 34678889999999888 443211122 3456888888
Q ss_pred cccCccc--ccChhhhCCCCCcEeccccccccccc--ChhhhcC-CCCCceeecccccccCCCCCCCccccccHHhh-cC
Q 002569 593 ISKTSVV--ELPEELKALVNLKCLNLDWAKELVVV--PQQLLSN-FSRLRVLRMFAIGVRSPYGLSSSWHENVAEEL-LG 666 (906)
Q Consensus 593 L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~l--p~~~i~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l-~~ 666 (906)
|.++.+. ..-..+..++.++.|.++.|+ +..+ ...-+.. -+.+++|+.-.|.+.. + .....+ .-
T Consensus 128 LNgT~L~w~~~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~-------w--~~~~~l~r~ 197 (418)
T KOG2982|consen 128 LNGTGLSWTQSTSSLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQL-------W--LNKNKLSRI 197 (418)
T ss_pred EcCCCCChhhhhhhhhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHH-------H--HHHHhHHhh
Confidence 8888654 556667778888888777662 2211 1110111 1234444444432110 0 001111 12
Q ss_pred CCCccEEEEEEechhhHHHHhhcccccccceeeEecccCCCcccccccccccCCCcEEEecCCCCCC
Q 002569 667 LKYLEVLEITFRSFKAYQTFLSSQKLRSCTQALLLDEFDREESIDVADLADLEQLNTLSFVGCDWPG 733 (906)
Q Consensus 667 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 733 (906)
.+++..+-+..+.+.....- ......+.+..|.|..+.......+..+.++++|..|.+++++...
T Consensus 198 Fpnv~sv~v~e~PlK~~s~e-k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSE-KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cccchheeeecCcccchhhc-ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 35555555555544433221 1111223444455555443333334467778888888888877655
No 195
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.08 E-value=0.0014 Score=65.59 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=31.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEe
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVV 220 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 220 (906)
.-.++|+|..|+||||++..+.... ...|+++.+++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 4578899999999999999998877 578888777754
No 196
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.07 E-value=0.0012 Score=60.85 Aligned_cols=22 Identities=41% Similarity=0.469 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 002569 184 IGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~ 205 (906)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999997
No 197
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0076 Score=68.09 Aligned_cols=154 Identities=21% Similarity=0.266 Sum_probs=89.6
Q ss_pred cccchhHHHHHHHHHHhc-----CCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHH
Q 002569 160 TVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIG 234 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~ 234 (906)
+-+|.++.+++|++.|.- .-+-+++..+|++|+|||+|++.++... ...| +-+.++.-.|..+|-..=-
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf---vR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF---VRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE---EEEecCccccHHHhccccc
Confidence 459999999999999842 2356899999999999999999999988 3444 2233443333333321100
Q ss_pred HHhCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccch---------hhhhhcCCc-----CCC--------CcEEE
Q 002569 235 KKIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWER---------VDLKKVGVP-----LPK--------NSAVV 292 (906)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~~~-----~~~--------gs~ii 292 (906)
.-+| .=+..+++.+++ .+.+.=+++||.++.. ..+-++..| |.+ =|.|+
T Consensus 398 TYIG--------amPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 398 TYIG--------AMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred cccc--------cCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 0011 001111222221 2345678999998642 122222222 111 24444
Q ss_pred -EEec-ccc-c-ccCCCccceEEeccCChHhHHHHHHHHh
Q 002569 293 -FTTR-FVD-V-CGGMEARRKFKVECLSDEDAWELFREKV 328 (906)
Q Consensus 293 -vTtR-~~~-v-~~~~~~~~~~~l~~L~~~e~~~Lf~~~a 328 (906)
|||- +-+ + +..+....++++.+.+++|=.+.-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3443 222 2 2234556889999999999988887775
No 198
>PRK08181 transposase; Validated
Probab=97.06 E-value=0.0021 Score=66.38 Aligned_cols=72 Identities=24% Similarity=0.278 Sum_probs=44.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHh
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTL 260 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 260 (906)
...+.++|++|+|||.||.++.+... .....+.|+. ..++...+..... ..+....... +
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~------~~~L~~~l~~a~~-------~~~~~~~l~~----l 165 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTR------TTDLVQKLQVARR-------ELQLESAIAK----L 165 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeee------HHHHHHHHHHHHh-------CCcHHHHHHH----H
Confidence 35699999999999999999998762 2233456664 3455555543321 1222222222 2
Q ss_pred ccCcEEEEEcccc
Q 002569 261 SKKKFVLLLDDLW 273 (906)
Q Consensus 261 ~~kr~LlVlDdv~ 273 (906)
.+.=||||||+.
T Consensus 166 -~~~dLLIIDDlg 177 (269)
T PRK08181 166 -DKFDLLILDDLA 177 (269)
T ss_pred -hcCCEEEEeccc
Confidence 234599999995
No 199
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.038 Score=62.39 Aligned_cols=151 Identities=16% Similarity=0.203 Sum_probs=91.0
Q ss_pred cccchhHHHHHHHHHHh-----cCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHH
Q 002569 160 TVVGLQSQLEQVWRCLV-----QEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIG 234 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~-----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~ 234 (906)
+-+|.++-+++|++.+. ..-+-+++..+|++|+|||++|+.++..+. ..| +-++++.-.|..+|-..=
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn---RkF---fRfSvGG~tDvAeIkGHR- 484 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN---RKF---FRFSVGGMTDVAEIKGHR- 484 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC---Cce---EEEeccccccHHhhcccc-
Confidence 45999999999999874 234679999999999999999999999883 333 224555555555542111
Q ss_pred HHhCCCCCccccCCHHHHHHHHHHHhcc---CcEEEEEccccch---------hhhhhcCCc-----CCC--------Cc
Q 002569 235 KKIGLYTDSWKDRSLEEKAQDIFKTLSK---KKFVLLLDDLWER---------VDLKKVGVP-----LPK--------NS 289 (906)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~---kr~LlVlDdv~~~---------~~~~~~~~~-----~~~--------gs 289 (906)
..-...+-.++.+.|+. ..-|+.||.|+.. ..+-++..| |.+ =|
T Consensus 485 -----------RTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLS 553 (906)
T KOG2004|consen 485 -----------RTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLS 553 (906)
T ss_pred -----------eeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchh
Confidence 11111222344444443 4568889998642 122222222 111 46
Q ss_pred EEEEEeccccccc----CCCccceEEeccCChHhHHHHHHHHh
Q 002569 290 AVVFTTRFVDVCG----GMEARRKFKVECLSDEDAWELFREKV 328 (906)
Q Consensus 290 ~iivTtR~~~v~~----~~~~~~~~~l~~L~~~e~~~Lf~~~a 328 (906)
+|++...-..+.. .......|++.+...+|-..+-.++.
T Consensus 554 kVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred heEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 6665333222211 12345688999999988877776664
No 200
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.04 E-value=0.01 Score=56.60 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=33.4
Q ss_pred chhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 163 GLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 163 gr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
|-+...+.+.+.+..+.-...+.++|+.|+||+|+|..+++..
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 4566777777777776345678999999999999999988876
No 201
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.03 E-value=0.00023 Score=70.02 Aligned_cols=154 Identities=14% Similarity=0.074 Sum_probs=75.2
Q ss_pred hhhCCCCCcEecccccccccccCh---hhhcCCCCCceeecccccccCCCCCCCcc---ccccHHhhcCCCCccEEEEEE
Q 002569 604 ELKALVNLKCLNLDWAKELVVVPQ---QLLSNFSRLRVLRMFAIGVRSPYGLSSSW---HENVAEELLGLKYLEVLEITF 677 (906)
Q Consensus 604 ~i~~L~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~~L~l~~~~~~~~~~~~~~~---~~~~~~~l~~l~~L~~L~l~~ 677 (906)
.+-++++|+..+++.|-.-...|+ ..|++-+.|.+|.+.+||+...-+..... .-.......+-|.|++..+..
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 344566677777776644334442 23556667777777776544211110000 001112234456788887777
Q ss_pred echhhHHH--HhhcccccccceeeEecccCCC----cccccccccccCCCcEEEecCCCCCCceeeecccccccCCCccc
Q 002569 678 RSFKAYQT--FLSSQKLRSCTQALLLDEFDRE----ESIDVADLADLEQLNTLSFVGCDWPGGLRIDYKDMVQKSRQPYV 751 (906)
Q Consensus 678 ~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~l~~~~~~ 751 (906)
|++...+. +.........|+.+.+..|..- ..+.+..+..+.+|+.|+|..|.++-.-.. . +......
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~-~-----La~al~~ 240 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSR-Y-----LADALCE 240 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHH-H-----HHHHhcc
Confidence 76644322 1111222245666666555421 122223445567888888888765431100 0 0011123
Q ss_pred CCCCCEEEEecC
Q 002569 752 FRSLEEVTVDSC 763 (906)
Q Consensus 752 ~~~L~~L~l~~c 763 (906)
.+.|+.|.+.+|
T Consensus 241 W~~lrEL~lnDC 252 (388)
T COG5238 241 WNLLRELRLNDC 252 (388)
T ss_pred cchhhhccccch
Confidence 455788888887
No 202
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.99 E-value=0.0029 Score=60.97 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=40.0
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.++||-|+.++++.-...++ +.+-+.|.||+|+||||-+..+++.+
T Consensus 27 ~dIVGNe~tv~rl~via~~g-nmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG-NMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC-CCCceEeeCCCCCchhhHHHHHHHHH
Confidence 35899999999987766665 89999999999999999999988887
No 203
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.037 Score=58.63 Aligned_cols=174 Identities=11% Similarity=0.040 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCC-----C
Q 002569 166 SQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGL-----Y 240 (906)
Q Consensus 166 ~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~-----~ 240 (906)
...+++...+..+.-...+.+.|+.|+||+++|+.++...- ....-+. .++.. ..-+.+...-.. .
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~ll-C~~~~~~----~Cg~C----~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALL-CQNYQSE----ACGFC----HSCELMQSGNHPDLHVIK 80 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHc-CCCCCCC----CCCCC----HHHHHHHcCCCCCEEEEe
Confidence 34556666666663466899999999999999999888662 1111000 00000 000001000000 0
Q ss_pred CC-ccccCCHHHHHHHHHHHh-----ccCcEEEEEccccch--hh---hhhcCCcCCCCcEEEEEecc-cccccC-CCcc
Q 002569 241 TD-SWKDRSLEEKAQDIFKTL-----SKKKFVLLLDDLWER--VD---LKKVGVPLPKNSAVVFTTRF-VDVCGG-MEAR 307 (906)
Q Consensus 241 ~~-~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~---~~~~~~~~~~gs~iivTtR~-~~v~~~-~~~~ 307 (906)
.+ .-.....+++. .+.+.+ .+++-++|+|++... .. +-+...-.+.++.+|++|.+ ..+... .+..
T Consensus 81 p~~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRC 159 (319)
T PRK06090 81 PEKEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRC 159 (319)
T ss_pred cCcCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 00 00112233332 233333 245568999999754 22 22222223346666666554 344322 2345
Q ss_pred ceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHH
Q 002569 308 RKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITI 360 (906)
Q Consensus 308 ~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 360 (906)
..+.+.+++.+++.+.+... +. . ....++..++|.|+.+..+
T Consensus 160 q~~~~~~~~~~~~~~~L~~~-~~---------~-~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 160 QQWVVTPPSTAQAMQWLKGQ-GI---------T-VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eeEeCCCCCHHHHHHHHHHc-CC---------c-hHHHHHHHcCCCHHHHHHH
Confidence 68899999999999988654 11 1 2356789999999977654
No 204
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.96 E-value=0.0095 Score=68.84 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=39.7
Q ss_pred CcccchhHHHHHHHHHHhcC----CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 159 PTVVGLQSQLEQVWRCLVQE----PAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.+++|.++.++++..++... ...+++.++|+.|+||||+++.++...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999998652 234679999999999999999999876
No 205
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.96 E-value=0.015 Score=69.61 Aligned_cols=156 Identities=17% Similarity=0.203 Sum_probs=85.4
Q ss_pred CcccchhHHHHHHHHHHhc-----CCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHH
Q 002569 159 PTVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETI 233 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i 233 (906)
.+.+|.++.+++|++++.. .....++.++|++|+||||+|+.++... ...|- -+..+...+..++...-
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~---~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYV---RMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEE---EEEcCCCCCHHHhccch
Confidence 4579999999999988853 1246789999999999999999999876 22332 23333333333222111
Q ss_pred HHHhCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccchh---------hhhhcCCc--------------CCC-Cc
Q 002569 234 GKKIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWERV---------DLKKVGVP--------------LPK-NS 289 (906)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---------~~~~~~~~--------------~~~-gs 289 (906)
....+ .....+.+.+... ....-+++||.++... .+..+..+ +.- +.
T Consensus 396 ~~~~g--------~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 396 RTYIG--------SMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hccCC--------CCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 11111 1111222233222 2233478899985321 11111111 111 23
Q ss_pred EEEEEecccccccC-CCccceEEeccCChHhHHHHHHHHhc
Q 002569 290 AVVFTTRFVDVCGG-MEARRKFKVECLSDEDAWELFREKVG 329 (906)
Q Consensus 290 ~iivTtR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~ 329 (906)
-+|.|+....+... .+....+.+.+++.+|-.++.+++..
T Consensus 467 ~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 467 MFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhh
Confidence 33445543332111 12345788999999999888877753
No 206
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.016 Score=62.81 Aligned_cols=140 Identities=21% Similarity=0.242 Sum_probs=84.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHH--
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIF-- 257 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~-- 257 (906)
....+.+.|++|+|||+||..++.. ..|..+--++.. ++ ...++......+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe------~m---------------iG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPE------DM---------------IGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChH------Hc---------------cCccHHHHHHHHHHH
Confidence 4677889999999999999999776 467755443211 11 1122333333333
Q ss_pred --HHhccCcEEEEEccccchhhhhhcCCcC----------------CCCcEEEE--EecccccccCCCc----cceEEec
Q 002569 258 --KTLSKKKFVLLLDDLWERVDLKKVGVPL----------------PKNSAVVF--TTRFVDVCGGMEA----RRKFKVE 313 (906)
Q Consensus 258 --~~l~~kr~LlVlDdv~~~~~~~~~~~~~----------------~~gs~iiv--TtR~~~v~~~~~~----~~~~~l~ 313 (906)
..-+..--.||+||+....+|-.++..+ |.|-|.+| ||....+...|+- ...|.++
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 3334455799999997766655444332 22656444 6666677776653 3578899
Q ss_pred cCCh-HhHHHHHHHHh-ccccccCCCCchHHHHHHHHHh
Q 002569 314 CLSD-EDAWELFREKV-GEETIESHHSIPELAQTVANEC 350 (906)
Q Consensus 314 ~L~~-~e~~~Lf~~~a-~~~~~~~~~~~~~~~~~i~~~c 350 (906)
.++. ++..+.+...- +. +.+...++++...+|
T Consensus 671 nl~~~~~~~~vl~~~n~fs-----d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNIFS-----DDEVRAIAEQLLSKK 704 (744)
T ss_pred ccCchHHHHHHHHHccCCC-----cchhHHHHHHHhccc
Confidence 9987 77777776653 22 223345555555555
No 207
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.022 Score=66.45 Aligned_cols=106 Identities=23% Similarity=0.380 Sum_probs=68.1
Q ss_pred CcccchhHHHHHHHHHHhc------C--CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHH
Q 002569 159 PTVVGLQSQLEQVWRCLVQ------E--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQ 230 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~ 230 (906)
..++|.+..++.+.+.+.. + ....+....|+.|+|||-||++++..+ .+.=+..+-++.|.......+-
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHHHHHH
Confidence 3589999999999888753 1 245788889999999999999999987 2222556666666543322222
Q ss_pred HHHHHHhCCCCCccccCCHHHHHHHHHHHhccCcE-EEEEccccch
Q 002569 231 ETIGKKIGLYTDSWKDRSLEEKAQDIFKTLSKKKF-VLLLDDLWER 275 (906)
Q Consensus 231 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~ 275 (906)
+-+|.+. .... .++ ...|-+.+++++| +|.||+|...
T Consensus 568 ----rLIGaPP-GYVG--yee-GG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 568 ----RLIGAPP-GYVG--YEE-GGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred ----HHhCCCC-CCce--ecc-ccchhHhhhcCCCeEEEechhhhc
Confidence 1222221 1111 111 3356667788888 8889999753
No 208
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.87 E-value=0.025 Score=58.84 Aligned_cols=56 Identities=23% Similarity=0.262 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHH
Q 002569 166 SQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQ 230 (906)
Q Consensus 166 ~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~ 230 (906)
+-++++..++..+ .-|.+.|++|+|||++|+.++... .. ..+.+++....+..+++
T Consensus 9 ~l~~~~l~~l~~g---~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG---YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC---CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHHh
Confidence 3445555555544 456799999999999999998754 12 24556666655555554
No 209
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.86 E-value=0.015 Score=64.22 Aligned_cols=133 Identities=18% Similarity=0.161 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCcc
Q 002569 165 QSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSW 244 (906)
Q Consensus 165 ~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~ 244 (906)
..-..++.+.+... ..++.|.|+-++||||+++.+..... +. .+++..-+...-.
T Consensus 23 ~~~~~~l~~~~~~~--~~i~~i~GpR~~GKTtll~~l~~~~~---~~---~iy~~~~d~~~~~----------------- 77 (398)
T COG1373 23 RKLLPRLIKKLDLR--PFIILILGPRQVGKTTLLKLLIKGLL---EE---IIYINFDDLRLDR----------------- 77 (398)
T ss_pred HhhhHHHHhhcccC--CcEEEEECCccccHHHHHHHHHhhCC---cc---eEEEEecchhcch-----------------
Confidence 34445555554444 12999999999999999977766652 22 5555433221100
Q ss_pred ccCCHHHHHHHHHHHhccCcEEEEEccccchhhhhhcCCcCCC-Cc-EEEEEecccccccC------CCccceEEeccCC
Q 002569 245 KDRSLEEKAQDIFKTLSKKKFVLLLDDLWERVDLKKVGVPLPK-NS-AVVFTTRFVDVCGG------MEARRKFKVECLS 316 (906)
Q Consensus 245 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~-gs-~iivTtR~~~v~~~------~~~~~~~~l~~L~ 316 (906)
....+....+...-..++..++||.|....+|......+-+ |- +|++|+-+...... .+....+++.||+
T Consensus 78 --~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 78 --IELLDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNLDVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred --hhHHHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccceEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 00111111111111227789999999998888876555444 22 68888876544221 1345678999999
Q ss_pred hHhHHHHH
Q 002569 317 DEDAWELF 324 (906)
Q Consensus 317 ~~e~~~Lf 324 (906)
..|-..+-
T Consensus 156 F~Efl~~~ 163 (398)
T COG1373 156 FREFLKLK 163 (398)
T ss_pred HHHHHhhc
Confidence 99987654
No 210
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.84 E-value=0.039 Score=62.32 Aligned_cols=194 Identities=15% Similarity=0.123 Sum_probs=116.8
Q ss_pred cccchhHHHHHHHHHHhc---C-CCCeEEEEEcCCCCcHHHHHHHHHHhccc-----CCCCCCEEEEEEeCCcccHHHHH
Q 002569 160 TVVGLQSQLEQVWRCLVQ---E-PAAGIIGLYGMGGVGKTTLLTQINNKFVD-----NPTDFDSVIWVVVSKDLQLEKIQ 230 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~---~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-----~~~~f~~~~wv~~s~~~~~~~l~ 230 (906)
.+-+||.+..+|-..+.. + ...+.+-|.|.+|.|||..+..|.+.+.+ ....|+ .+.|+.-.-..+.+++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHH
Confidence 467899999999888754 2 34569999999999999999999996621 123343 3445555555789999
Q ss_pred HHHHHHhCCCCCccccCCHHHHHHHHHHHhc-----cCcEEEEEccccch-----hhhhhcCCcC-CCCcEEEEEecc--
Q 002569 231 ETIGKKIGLYTDSWKDRSLEEKAQDIFKTLS-----KKKFVLLLDDLWER-----VDLKKVGVPL-PKNSAVVFTTRF-- 297 (906)
Q Consensus 231 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~~-----~~~~~~~~~~-~~gs~iivTtR~-- 297 (906)
..|..++.... .......+.+..++. .+..+|++|+++.. +.+..+..+. ..+||++|.+=.
T Consensus 476 ~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 476 EKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 99999987643 233334444444443 35689999997532 2233332221 227877665421
Q ss_pred c---------ccccCCCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHH
Q 002569 298 V---------DVCGGMEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITI 360 (906)
Q Consensus 298 ~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 360 (906)
. .++..++ ...+...|.+.++-.+....+..+...-.....+=++++|+.-.|-.-.|+...
T Consensus 551 mdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred ccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 1 1122221 345677888888888888777654421112222334555555444444444433
No 211
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.84 E-value=0.056 Score=57.73 Aligned_cols=37 Identities=30% Similarity=0.367 Sum_probs=29.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEe
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVV 220 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 220 (906)
...+.++|..|+|||+||.++++... ..-..++|+++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEH
Confidence 37799999999999999999999873 22335677654
No 212
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.80 E-value=0.046 Score=58.70 Aligned_cols=178 Identities=12% Similarity=0.069 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC-----CC
Q 002569 166 SQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG-----LY 240 (906)
Q Consensus 166 ~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~-----~~ 240 (906)
..-+++...+..+.-...+.+.|+.|+||+|+|..++...- .....+.. .++. -.--+.+...-. +.
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~Ll-C~~~~~~~---~Cg~----C~sC~~~~~g~HPD~~~i~ 80 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLM-CQQPQGHK---SCGH----CRGCQLMQAGTHPDYYTLT 80 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHc-CCCCCCCC---CCCC----CHHHHHHHcCCCCCEEEEe
Confidence 34566777777764567889999999999999999887762 11111000 0000 000000000000 00
Q ss_pred CCc-cccCCHHHHHHHHHHHh-----ccCcEEEEEccccch--hh---hhhcCCcCCCCcEEEEEecc-cccccC-CCcc
Q 002569 241 TDS-WKDRSLEEKAQDIFKTL-----SKKKFVLLLDDLWER--VD---LKKVGVPLPKNSAVVFTTRF-VDVCGG-MEAR 307 (906)
Q Consensus 241 ~~~-~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~--~~---~~~~~~~~~~gs~iivTtR~-~~v~~~-~~~~ 307 (906)
.+. ......++..+ +.+.+ .+++-++|+|+++.. .. +-+...--+.++.+|.+|.+ ..+... .+..
T Consensus 81 p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC 159 (334)
T PRK07993 81 PEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC 159 (334)
T ss_pred cccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 000 00122333322 33322 356679999999754 22 22222222446666666654 334322 2334
Q ss_pred ceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHH
Q 002569 308 RKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITI 360 (906)
Q Consensus 308 ~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~ 360 (906)
..+.+.+++.+++.+.+....+.. .+.+..++..++|.|..+..+
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~~~~--------~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSREVTMS--------QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred ccccCCCCCHHHHHHHHHHccCCC--------HHHHHHHHHHcCCCHHHHHHH
Confidence 678999999999998886543211 344678899999999755433
No 213
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.80 E-value=0.004 Score=64.04 Aligned_cols=91 Identities=21% Similarity=0.227 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCc
Q 002569 164 LQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDS 243 (906)
Q Consensus 164 r~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~ 243 (906)
+.+.+..+.+....=.+..-+.++|.+|+|||.||.++.++.. ..--.+.+++ ..++..++.....-.
T Consensus 88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~---~~g~sv~f~~------~~el~~~Lk~~~~~~--- 155 (254)
T COG1484 88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL---KAGISVLFIT------APDLLSKLKAAFDEG--- 155 (254)
T ss_pred hHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhcC---
Confidence 4444444443332212567899999999999999999999983 2233566664 456666666654321
Q ss_pred cccCCHHHHHHHHHHHhccCcEEEEEccccc
Q 002569 244 WKDRSLEEKAQDIFKTLSKKKFVLLLDDLWE 274 (906)
Q Consensus 244 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 274 (906)
. ...++.+.++ +-=||||||+..
T Consensus 156 ----~---~~~~l~~~l~-~~dlLIiDDlG~ 178 (254)
T COG1484 156 ----R---LEEKLLRELK-KVDLLIIDDIGY 178 (254)
T ss_pred ----c---hHHHHHHHhh-cCCEEEEecccC
Confidence 1 1112222121 223899999853
No 214
>PRK04296 thymidine kinase; Provisional
Probab=96.77 E-value=0.0018 Score=63.66 Aligned_cols=113 Identities=16% Similarity=0.048 Sum_probs=65.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHhc
Q 002569 182 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTLS 261 (906)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 261 (906)
.++.|+|..|.||||+|..+..+.. .+...++.+.- .++.......++.+++............+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k~--~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFKP--AIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEec--cccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 5788999999999999999988872 23334444421 112222234456666643322112344555555555 33
Q ss_pred cCcEEEEEccccc--hhhhhhcCCc-CCCCcEEEEEeccccc
Q 002569 262 KKKFVLLLDDLWE--RVDLKKVGVP-LPKNSAVVFTTRFVDV 300 (906)
Q Consensus 262 ~kr~LlVlDdv~~--~~~~~~~~~~-~~~gs~iivTtR~~~v 300 (906)
++.-+||+|.+.- .++..++... -+.|..||+|.++...
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 3455899999853 2323333222 2338899999986443
No 215
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.74 E-value=0.15 Score=62.29 Aligned_cols=61 Identities=25% Similarity=0.365 Sum_probs=43.5
Q ss_pred CcccchhHHHHHHHHHHhc------C--CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCC
Q 002569 159 PTVVGLQSQLEQVWRCLVQ------E--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSK 222 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 222 (906)
..++|.+..++.+...+.. + ....++.++|+.|+|||++|+.+++... ..-...+.++++.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~---~~~~~~i~id~se 636 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF---DSDDAMVRIDMSE 636 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh---cCCCcEEEEEhHH
Confidence 4589999999888888753 1 1235789999999999999999998762 2223345555543
No 216
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.73 E-value=0.00073 Score=66.84 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=20.4
Q ss_pred ceeeeEEeccccCCCCCCCCCCCCCceEEEeecC
Q 002569 515 WEIVRRLSLMRNSIDNLPTVPTCPHLLTLFLNRN 548 (906)
Q Consensus 515 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~ 548 (906)
+..+.++++.+..+..+..++.+++|+.|.++.|
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDN 75 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCC
Confidence 3455566665555555555566666666666666
No 217
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.72 E-value=0.015 Score=59.73 Aligned_cols=165 Identities=21% Similarity=0.279 Sum_probs=98.1
Q ss_pred cccchhHHHHHHHHHHhcC---CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCccc-----HHHHHH
Q 002569 160 TVVGLQSQLEQVWRCLVQE---PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQ-----LEKIQE 231 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-----~~~l~~ 231 (906)
.++|-.++..++-.++... ++..-+.|+|+.|.|||+|......+..+..++ .+-|....... +..|.+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhhHHHHHHHHH
Confidence 4799999999999988651 367788999999999999998887774233333 34444443332 344444
Q ss_pred HHHHHhCCCCCccccCCHHHHHHHHHHHhcc------CcEEEEEccccchh---------hhhhcC-CcCCCCcEEEEEe
Q 002569 232 TIGKKIGLYTDSWKDRSLEEKAQDIFKTLSK------KKFVLLLDDLWERV---------DLKKVG-VPLPKNSAVVFTT 295 (906)
Q Consensus 232 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~------kr~LlVlDdv~~~~---------~~~~~~-~~~~~gs~iivTt 295 (906)
++..++..... ...+..+....+...|+. -++++|+|.++--. .+-++. .+-.+-+-|-+||
T Consensus 102 ql~~e~~~~~k--~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 102 QLALELNRIVK--SFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHhhhhe--eecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 44444432211 223344444555555543 36888888875321 111111 1111145677888
Q ss_pred ccc-------ccccCCCccceEEeccCChHhHHHHHHHHhc
Q 002569 296 RFV-------DVCGGMEARRKFKVECLSDEDAWELFREKVG 329 (906)
Q Consensus 296 R~~-------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~ 329 (906)
|-. .|-+.+....++-++.++-++...+++....
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 842 3333344445667788888888888887764
No 218
>PRK06921 hypothetical protein; Provisional
Probab=96.70 E-value=0.0027 Score=65.80 Aligned_cols=39 Identities=31% Similarity=0.396 Sum_probs=30.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEe
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVV 220 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 220 (906)
....+.++|..|+|||+||.++++... ......++|+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 457899999999999999999999872 221345677764
No 219
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.67 E-value=0.0024 Score=67.70 Aligned_cols=46 Identities=22% Similarity=0.364 Sum_probs=41.0
Q ss_pred cccchhHHHHHHHHHHhc-----CCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 160 TVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+++|.++.++++++++.. +...+++.++|++|+||||||+.+.+.+
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999865 2356899999999999999999999988
No 220
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.67 E-value=0.0068 Score=59.66 Aligned_cols=89 Identities=20% Similarity=0.256 Sum_probs=54.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCC-cccHHHHHHHHHHHhCCCCCcc-ccCCHHHHHHHHHH
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSK-DLQLEKIQETIGKKIGLYTDSW-KDRSLEEKAQDIFK 258 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 258 (906)
+++|.++|+.|+||||.+..++.... .+ -..+..++... .....+-++..++.++.+.... ...+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~-~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK-LK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH-HT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh-hc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 47999999999999988888887772 22 44566676543 2356667777888887652111 22344454444334
Q ss_pred HhccCc-EEEEEccc
Q 002569 259 TLSKKK-FVLLLDDL 272 (906)
Q Consensus 259 ~l~~kr-~LlVlDdv 272 (906)
..+.++ =++++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 444443 47777765
No 221
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.67 E-value=0.00066 Score=67.16 Aligned_cols=105 Identities=26% Similarity=0.282 Sum_probs=63.1
Q ss_pred CCCCceEEEeecCCCccccccccCCCCceeEEEccCc--ccccccccccccccccceeecccCccccc--ChhhhCCCCC
Q 002569 536 TCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDN--ETLRQLPMGISKLVSLQLLDISKTSVVEL--PEELKALVNL 611 (906)
Q Consensus 536 ~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~--~~i~~lp~~i~~L~~L~~L~L~~~~i~~l--p~~i~~L~~L 611 (906)
.+..|..|.+.++.++.+.. |..+++|+.|.++.| .....++-...++++|++|++++|+|+-+ -..+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 34455556666665544433 566778888888877 33444555555668888888888876632 1245666777
Q ss_pred cEecccccccccccC---hhhhcCCCCCceeeccc
Q 002569 612 KCLNLDWAKELVVVP---QQLLSNFSRLRVLRMFA 643 (906)
Q Consensus 612 ~~L~l~~~~~l~~lp---~~~i~~l~~L~~L~l~~ 643 (906)
..|++.+|. ...+- ..++.-+++|.+|+-..
T Consensus 119 ~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 119 KSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhcccCC-ccccccHHHHHHHHhhhhccccccc
Confidence 777777774 22222 23344566777766543
No 222
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.66 E-value=0.00044 Score=79.81 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=18.0
Q ss_pred ccEEecCCccccccccCCCC--CCCCccEEeecCCCCCCCc
Q 002569 815 LQRLRLERLRNLKSIYWKPL--PLPRLKELEFRGCDSLKKL 853 (906)
Q Consensus 815 L~~L~l~~~~~l~~~~~~~~--~~~~L~~L~i~~c~~L~~L 853 (906)
|+.|.+..|.....-..... .+.++..+.+.+|+.+..-
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 66666666554433221111 1444555555555544443
No 223
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.64 E-value=0.035 Score=67.05 Aligned_cols=168 Identities=16% Similarity=0.174 Sum_probs=93.3
Q ss_pred cccchhHHHHHHHHHHhc------------CCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHH
Q 002569 160 TVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLE 227 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 227 (906)
++.|.+..++++.+.+.- -...+-|.++|++|+|||++|+++++.. ...| +.+.. .
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~----~ 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRG----P 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----H
Confidence 467888877777666531 1235568999999999999999999986 2222 22221 1
Q ss_pred HHHHHHHHHhCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccchh--------------hhhhcCCc---C-C-CC
Q 002569 228 KIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWERV--------------DLKKVGVP---L-P-KN 288 (906)
Q Consensus 228 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------------~~~~~~~~---~-~-~g 288 (906)
++ +... ...+...+...+...-...+.+|++|+++... ....+... + . .+
T Consensus 522 ~l----~~~~-------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 522 EI----LSKW-------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred HH----hhcc-------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 11 1111 11222223333333334567999999985320 01111111 1 1 14
Q ss_pred cEEEEEecccccccC--C---CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCCh
Q 002569 289 SAVVFTTRFVDVCGG--M---EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLP 354 (906)
Q Consensus 289 s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~P 354 (906)
..||.||...+.... . .-...+.++..+.++-.++|+.+..........+ ...+++.+.|.-
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 456667755443221 1 1235678888899988889877654433222212 456777787764
No 224
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.63 E-value=0.06 Score=58.34 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhcC--CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 165 QSQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 165 ~~~~~~l~~~L~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+.-.+.+.+.+.+. ....+|+|.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44566777777653 478999999999999999999999988
No 225
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.56 E-value=0.014 Score=55.96 Aligned_cols=39 Identities=31% Similarity=0.492 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcc
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDL 224 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 224 (906)
++.|+|.+|+||||++..+..... ..-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA---TKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH---hcCCEEEEEECCcch
Confidence 468999999999999999988872 345678888776554
No 226
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.55 E-value=0.0094 Score=60.66 Aligned_cols=47 Identities=26% Similarity=0.379 Sum_probs=36.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHH
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKI 229 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l 229 (906)
+.-.++.|+|.+|+|||++|.+++.... ..-..++|++.. .++...+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHH
Confidence 3568999999999999999999988763 334678999887 5555444
No 227
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.55 E-value=0.002 Score=58.28 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+|+|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 228
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.54 E-value=0.0096 Score=61.43 Aligned_cols=92 Identities=24% Similarity=0.308 Sum_probs=56.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhccc---CCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCc-------cccCCH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVD---NPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDS-------WKDRSL 249 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~-------~~~~~~ 249 (906)
...+.=|+|.+|+|||.|+.+++-...- ....-..++|++....+...++. +|+++.+...+. ....+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 5679999999999999999888765411 11223479999999999888775 466765543211 011233
Q ss_pred HHHH---HHHHHHhcc-CcEEEEEccc
Q 002569 250 EEKA---QDIFKTLSK-KKFVLLLDDL 272 (906)
Q Consensus 250 ~~~~---~~l~~~l~~-kr~LlVlDdv 272 (906)
+++. ..+...+.+ +--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 3333 333333333 3458888887
No 229
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.52 E-value=0.0034 Score=60.78 Aligned_cols=74 Identities=31% Similarity=0.381 Sum_probs=43.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKT 259 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 259 (906)
+..-+.++|..|+|||.||.++.+...+ .-..+.|+. ..+++..+-..- ......... +.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~---~g~~v~f~~------~~~L~~~l~~~~-------~~~~~~~~~----~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR---KGYSVLFIT------ASDLLDELKQSR-------SDGSYEELL----KR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEE------HHHHHHHHHCCH-------CCTTHCHHH----HH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc---CCcceeEee------cCceeccccccc-------cccchhhhc----Cc
Confidence 4567999999999999999999988732 223466664 445555554321 112222222 22
Q ss_pred hccCcEEEEEccccc
Q 002569 260 LSKKKFVLLLDDLWE 274 (906)
Q Consensus 260 l~~kr~LlVlDdv~~ 274 (906)
+. +-=||||||+..
T Consensus 106 l~-~~dlLilDDlG~ 119 (178)
T PF01695_consen 106 LK-RVDLLILDDLGY 119 (178)
T ss_dssp HH-TSSCEEEETCTS
T ss_pred cc-cccEecccccce
Confidence 33 334788999854
No 230
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.51 E-value=0.026 Score=68.11 Aligned_cols=170 Identities=17% Similarity=0.161 Sum_probs=91.8
Q ss_pred cccchhHHHHHHHHHHhc---------C---CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHH
Q 002569 160 TVVGLQSQLEQVWRCLVQ---------E---PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLE 227 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~---------~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 227 (906)
++.|.+..++++.+.+.. . ...+.|.++|++|+||||+|+.+++.. ...| +.+..+
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~------ 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGP------ 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecH------
Confidence 478999998888777631 0 234678999999999999999999986 2222 223221
Q ss_pred HHHHHHHHHhCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccchh----------------hhhhcCCcCCC-CcE
Q 002569 228 KIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWERV----------------DLKKVGVPLPK-NSA 290 (906)
Q Consensus 228 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~~~~~~~~-gs~ 290 (906)
++. ... .......+...+.......+.+|+||++.... .+..+...+.. +..
T Consensus 247 ~i~----~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 EIM----SKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred HHh----ccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 111 100 11112223333333344567899999985320 11111111222 344
Q ss_pred EEE-Eecccc-cccCC---C-ccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHH
Q 002569 291 VVF-TTRFVD-VCGGM---E-ARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLA 356 (906)
Q Consensus 291 iiv-TtR~~~-v~~~~---~-~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Pla 356 (906)
+|| ||.... +...+ + -...+.+...+.++-.+++........... ......+++.+.|.--+
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~----d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE----DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc----ccCHHHHHHhCCCCCHH
Confidence 444 444322 11111 1 124577788888888888876543322111 12356788888886543
No 231
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.50 E-value=0.0073 Score=63.71 Aligned_cols=87 Identities=21% Similarity=0.207 Sum_probs=58.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCc---cccCCHHHHHHH
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDS---WKDRSLEEKAQD 255 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~ 255 (906)
+.-+++-|+|++|+||||||.+++.... ..-..++|++....++.. .+++++...+. ....+.++....
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~---~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i 124 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQ---KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEI 124 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHH
Confidence 4568999999999999999999887762 334678899887776653 34555543221 123345555555
Q ss_pred HHHHhcc-CcEEEEEcccc
Q 002569 256 IFKTLSK-KKFVLLLDDLW 273 (906)
Q Consensus 256 l~~~l~~-kr~LlVlDdv~ 273 (906)
+...++. ..-++|+|-|-
T Consensus 125 ~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 125 ADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHHhccCCCEEEEcchH
Confidence 5555543 45699999874
No 232
>PHA00729 NTP-binding motif containing protein
Probab=96.50 E-value=0.012 Score=58.42 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=27.5
Q ss_pred HHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 170 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 170 ~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
++++.+... +...|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~-~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNN-GFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcC-CeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344445444 45679999999999999999999875
No 233
>PRK06526 transposase; Provisional
Probab=96.50 E-value=0.0043 Score=63.72 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
....+.++|++|+|||+||..+....
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 34668999999999999999998876
No 234
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.49 E-value=0.0077 Score=63.51 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=58.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCc---cccCCHHHHHHH
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDS---WKDRSLEEKAQD 255 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~ 255 (906)
+.-+++-|+|++|+||||||.+++.... ..-..++|++....++.. .+++++...+. ....+.++....
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~ 124 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEI 124 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 4668999999999999999998877762 234677899877766553 35555543221 123345555555
Q ss_pred HHHHhc-cCcEEEEEcccc
Q 002569 256 IFKTLS-KKKFVLLLDDLW 273 (906)
Q Consensus 256 l~~~l~-~kr~LlVlDdv~ 273 (906)
+...++ +..-++|+|-|-
T Consensus 125 ~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 125 AETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHHhhccCCcEEEEcchh
Confidence 555554 356799999974
No 235
>PRK04132 replication factor C small subunit; Provisional
Probab=96.49 E-value=0.056 Score=64.48 Aligned_cols=150 Identities=14% Similarity=0.090 Sum_probs=90.5
Q ss_pred CCCCcHHHHHHHHHHhcccCCCCC-CEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHhccCcEEE
Q 002569 189 MGGVGKTTLLTQINNKFVDNPTDF-DSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVL 267 (906)
Q Consensus 189 ~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~Ll 267 (906)
|.++||||+|.+++++.- .+.+ ..++-++.++......+. ++++.+.... . .-..+..++
T Consensus 574 Ph~lGKTT~A~ala~~l~--g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~----~------------~~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALARELF--GENWRHNFLELNASDERGINVIR-EKVKEFARTK----P------------IGGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhhh--cccccCeEEEEeCCCcccHHHHH-HHHHHHHhcC----C------------cCCCCCEEE
Confidence 788999999999999861 1222 246677777654444333 3333221100 0 001245799
Q ss_pred EEccccch--hhhhhc---CCcCCCCcEEEEEeccc-ccccC-CCccceEEeccCChHhHHHHHHHHhccccccCCCCch
Q 002569 268 LLDDLWER--VDLKKV---GVPLPKNSAVVFTTRFV-DVCGG-MEARRKFKVECLSDEDAWELFREKVGEETIESHHSIP 340 (906)
Q Consensus 268 VlDdv~~~--~~~~~~---~~~~~~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~ 340 (906)
|+|+++.. .....+ ....+..+++|.+|.+. .+... .+....+++.+++.++....+...+.......+ .
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~---~ 711 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT---E 711 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC---H
Confidence 99999864 233333 22233466777666543 33222 233568999999999999888776654332222 5
Q ss_pred HHHHHHHHHhCCChHHHHHH
Q 002569 341 ELAQTVANECGGLPLALITI 360 (906)
Q Consensus 341 ~~~~~i~~~c~G~Plai~~~ 360 (906)
+....|++.|+|.+..+..+
T Consensus 712 e~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 712 EGLQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 67899999999998654433
No 236
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.47 E-value=0.017 Score=59.30 Aligned_cols=93 Identities=16% Similarity=0.307 Sum_probs=55.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCC----CCEEEEEEeCCcccHHHHHHHHHHHhCCCCCc-------cccC
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD----FDSVIWVVVSKDLQLEKIQETIGKKIGLYTDS-------WKDR 247 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~-------~~~~ 247 (906)
+.-.++.|+|.+|+|||++|.+++... ..... ...++|++....++..++. ++++..+..... ....
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecC
Confidence 356899999999999999999997654 11121 3689999988877665543 344443322110 0111
Q ss_pred CHH---HHHHHHHHHhcc--CcEEEEEcccc
Q 002569 248 SLE---EKAQDIFKTLSK--KKFVLLLDDLW 273 (906)
Q Consensus 248 ~~~---~~~~~l~~~l~~--kr~LlVlDdv~ 273 (906)
+.+ +....+.+.+.. +.-+||+|-+.
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 222 233444444433 45688888874
No 237
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.11 Score=57.75 Aligned_cols=150 Identities=18% Similarity=0.236 Sum_probs=88.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKT 259 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 259 (906)
...-|..||++|+|||-||++|+|.. +..| +.|..+ +++..- ...++....+.+.+.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkY-----------VGESErAVR~vFqRA 600 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKY-----------VGESERAVRQVFQRA 600 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHH-----------hhhHHHHHHHHHHHh
Confidence 46778999999999999999999987 3444 444432 121111 122334444444555
Q ss_pred hccCcEEEEEccccchh-------------hhhhcC---CcCCC--CcEEEEEecccccccC--C--C-ccceEEeccCC
Q 002569 260 LSKKKFVLLLDDLWERV-------------DLKKVG---VPLPK--NSAVVFTTRFVDVCGG--M--E-ARRKFKVECLS 316 (906)
Q Consensus 260 l~~kr~LlVlDdv~~~~-------------~~~~~~---~~~~~--gs~iivTtR~~~v~~~--~--~-~~~~~~l~~L~ 316 (906)
-..-+++|.+|.++... ....+. ..+.. |.-||-+|...++... + + -....-++.=+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 55679999999986321 011111 11211 6778877776666331 1 1 23455666677
Q ss_pred hHhHHHHHHHHhcc--ccccCCCCchHHHHHHHHHhCCCh
Q 002569 317 DEDAWELFREKVGE--ETIESHHSIPELAQTVANECGGLP 354 (906)
Q Consensus 317 ~~e~~~Lf~~~a~~--~~~~~~~~~~~~~~~i~~~c~G~P 354 (906)
.+|=..+++..... .....+-++.++++. .+|.|.-
T Consensus 681 ~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 681 AEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 78888888888763 223334456666553 3566654
No 238
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.45 E-value=0.0044 Score=61.41 Aligned_cols=105 Identities=13% Similarity=0.148 Sum_probs=58.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHH---HHHHHhCCCCCccccCCHHHHHHHHHH
Q 002569 182 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQE---TIGKKIGLYTDSWKDRSLEEKAQDIFK 258 (906)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~---~i~~~l~~~~~~~~~~~~~~~~~~l~~ 258 (906)
+.|.|+|+.|+||||++..+..... ......++.-. ++.. .... .+..+-.. ..+.....+.++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~---~~~~~~i~t~e-~~~E--~~~~~~~~~i~q~~v------g~~~~~~~~~i~~ 69 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN---KNKTHHILTIE-DPIE--FVHESKRSLINQREV------GLDTLSFENALKA 69 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh---hcCCcEEEEEc-CCcc--ccccCccceeeeccc------CCCccCHHHHHHH
Confidence 5789999999999999998887762 23333333321 1111 0000 01111000 1112234455667
Q ss_pred HhccCcEEEEEccccchhhhhhcCCcCCCCcEEEEEeccc
Q 002569 259 TLSKKKFVLLLDDLWERVDLKKVGVPLPKNSAVVFTTRFV 298 (906)
Q Consensus 259 ~l~~kr~LlVlDdv~~~~~~~~~~~~~~~gs~iivTtR~~ 298 (906)
.+...+=.+++|++.+.+.+.........|..++.|+-..
T Consensus 70 aLr~~pd~ii~gEird~e~~~~~l~~a~~G~~v~~t~Ha~ 109 (198)
T cd01131 70 ALRQDPDVILVGEMRDLETIRLALTAAETGHLVMSTLHTN 109 (198)
T ss_pred HhcCCcCEEEEcCCCCHHHHHHHHHHHHcCCEEEEEecCC
Confidence 7777788999999987665544333323366666666543
No 239
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.43 E-value=0.028 Score=60.91 Aligned_cols=136 Identities=15% Similarity=0.152 Sum_probs=78.2
Q ss_pred cccchhHHHHHHHHHHhcCCCCeE-EEEEcCCCCcHHHHHHHHHHhcccCCC-------------------CCCEEEEEE
Q 002569 160 TVVGLQSQLEQVWRCLVQEPAAGI-IGLYGMGGVGKTTLLTQINNKFVDNPT-------------------DFDSVIWVV 219 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~ 219 (906)
.++|-+....++..+....++.+. +.++|+.|+||||+|..+.+.+- ... ....+..+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELL-CENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHh-CCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 367888888888888875434555 99999999999999999998872 111 112333343
Q ss_pred eCCccc---HHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccchh-----hhhhcCCcCCCCcEE
Q 002569 220 VSKDLQ---LEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWERV-----DLKKVGVPLPKNSAV 291 (906)
Q Consensus 220 ~s~~~~---~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----~~~~~~~~~~~gs~i 291 (906)
.+.... ..+..+++.+...... ..++.-++++|+++... .+.....-.+..+++
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~------------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~ 142 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESP------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRF 142 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCC------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEE
Confidence 333322 2333333333332211 03567799999997642 222222333347788
Q ss_pred EEEecc-cccccCC-CccceEEecc
Q 002569 292 VFTTRF-VDVCGGM-EARRKFKVEC 314 (906)
Q Consensus 292 ivTtR~-~~v~~~~-~~~~~~~l~~ 314 (906)
|++|.. ..+...+ +....+++.+
T Consensus 143 il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 143 ILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEcCChhhccchhhhcceeeecCC
Confidence 887763 2332211 2234566666
No 240
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.42 E-value=0.02 Score=68.82 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=42.7
Q ss_pred CcccchhHHHHHHHHHHhc------C--CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCC
Q 002569 159 PTVVGLQSQLEQVWRCLVQ------E--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSK 222 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 222 (906)
..++|.+..++.+...+.. + ....++.++|+.|+|||+||+.++... +...+.++.+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l------~~~~~~~d~se 519 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL------GVHLERFDMSE 519 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh------cCCeEEEeCch
Confidence 3578888888888887753 1 124578999999999999999999876 12345555554
No 241
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.42 E-value=0.019 Score=58.48 Aligned_cols=91 Identities=16% Similarity=0.241 Sum_probs=57.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCC------CEEEEEEeCCcccHHHHHHHHHHHhCCCCC----c---cc
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF------DSVIWVVVSKDLQLEKIQETIGKKIGLYTD----S---WK 245 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f------~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~----~---~~ 245 (906)
+.-.++.|+|.+|+|||++|.+++.... ... ..++|++....++...+. ++....+.... . ..
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~---~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~ 92 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQ---LPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVAR 92 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhh---cccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEe
Confidence 3568999999999999999999887652 222 578999988777765554 33333222110 0 01
Q ss_pred cCCHHHHHHHHHHHhc---c-CcEEEEEcccc
Q 002569 246 DRSLEEKAQDIFKTLS---K-KKFVLLLDDLW 273 (906)
Q Consensus 246 ~~~~~~~~~~l~~~l~---~-kr~LlVlDdv~ 273 (906)
..+.+++...+.+... . +.-++|+|.+.
T Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 93 PYNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 2345555555554432 3 44589999874
No 242
>PRK09183 transposase/IS protein; Provisional
Probab=96.41 E-value=0.009 Score=61.79 Aligned_cols=26 Identities=35% Similarity=0.379 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
....+.|+|+.|+|||+||..++...
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 34678899999999999999998775
No 243
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.37 E-value=0.016 Score=58.28 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=38.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHH
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQE 231 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~ 231 (906)
+.-.++.|+|++|+|||+++.+++.... .....++|++... +....+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHHH
Confidence 3568999999999999999999887762 3457899999875 55555544
No 244
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.17 Score=56.63 Aligned_cols=89 Identities=21% Similarity=0.326 Sum_probs=47.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCc-ccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKD-LQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFK 258 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 258 (906)
...+|+|+|.+|+||||++..++..+. .......+..++.... ....+-++.....++.... ...+...+...+.+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la-~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~~ 425 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFA-AQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLER 425 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHHH
Confidence 358999999999999999999887662 1222334555554221 1122223333333333211 12233344444433
Q ss_pred HhccCcEEEEEcccc
Q 002569 259 TLSKKKFVLLLDDLW 273 (906)
Q Consensus 259 ~l~~kr~LlVlDdv~ 273 (906)
+. +.=+|++|..-
T Consensus 426 -l~-~~DLVLIDTaG 438 (559)
T PRK12727 426 -LR-DYKLVLIDTAG 438 (559)
T ss_pred -hc-cCCEEEecCCC
Confidence 33 34588889874
No 245
>PRK09354 recA recombinase A; Provisional
Probab=96.36 E-value=0.01 Score=63.10 Aligned_cols=87 Identities=18% Similarity=0.207 Sum_probs=59.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCc---cccCCHHHHHHH
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDS---WKDRSLEEKAQD 255 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~ 255 (906)
+.-+++-|+|++|+||||||.+++.... ..-..++||+.-..++.. .+++++...+. ....+.++....
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~---~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i 129 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEI 129 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 4668999999999999999999877762 345678999988877753 45556554321 123345555555
Q ss_pred HHHHhcc-CcEEEEEcccc
Q 002569 256 IFKTLSK-KKFVLLLDDLW 273 (906)
Q Consensus 256 l~~~l~~-kr~LlVlDdv~ 273 (906)
+...++. +.-+||+|-|-
T Consensus 130 ~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 130 ADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHhhcCCCCEEEEeChh
Confidence 5555543 55699999974
No 246
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.34 E-value=0.02 Score=60.70 Aligned_cols=60 Identities=18% Similarity=0.298 Sum_probs=44.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCC----CCCCEEEEEEeCCcccHHHHHHHHHHHhCCC
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNP----TDFDSVIWVVVSKDLQLEKIQETIGKKIGLY 240 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~ 240 (906)
+.-+++-|+|++|+|||+|+.+++-.. ... ..-..++||+....+.++++.+ ++++++..
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~-~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d 157 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTA-QLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVD 157 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHH-hcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 356899999999999999998876543 111 1224799999999888888764 56777654
No 247
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.34 E-value=0.026 Score=57.39 Aligned_cols=89 Identities=19% Similarity=0.256 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcC-CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccc
Q 002569 167 QLEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWK 245 (906)
Q Consensus 167 ~~~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~ 245 (906)
.+..+.+..... .....+.++|.+|+|||+||.++++... ..-..+++++ ..++...+-..... .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~~-----~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFSN-----S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHhh-----c
Confidence 344444444332 2345789999999999999999999883 2234566664 34555555443321 1
Q ss_pred cCCHHHHHHHHHHHhccCcEEEEEccccc
Q 002569 246 DRSLEEKAQDIFKTLSKKKFVLLLDDLWE 274 (906)
Q Consensus 246 ~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 274 (906)
..+... +.+.+. +.=+|||||+..
T Consensus 150 ~~~~~~----~l~~l~-~~dlLvIDDig~ 173 (244)
T PRK07952 150 ETSEEQ----LLNDLS-NVDLLVIDEIGV 173 (244)
T ss_pred cccHHH----HHHHhc-cCCEEEEeCCCC
Confidence 122222 223344 344888999954
No 248
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.31 E-value=0.22 Score=53.35 Aligned_cols=89 Identities=17% Similarity=0.206 Sum_probs=53.8
Q ss_pred cCcEEEEEccccch--hhhhhc---CCcCCCCcEEEEEecc-cccccC-CCccceEEeccCChHhHHHHHHHHhcccccc
Q 002569 262 KKKFVLLLDDLWER--VDLKKV---GVPLPKNSAVVFTTRF-VDVCGG-MEARRKFKVECLSDEDAWELFREKVGEETIE 334 (906)
Q Consensus 262 ~kr~LlVlDdv~~~--~~~~~~---~~~~~~gs~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~ 334 (906)
+++-++|+|+++.. .....+ ..-.+.++.+|.+|.+ ..+... .+....+.+.+++.++..+.+... +..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~~--- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GVA--- 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CCC---
Confidence 45568899999753 222222 2222336655555544 444322 233468999999999999988765 211
Q ss_pred CCCCchHHHHHHHHHhCCChHHHHHHH
Q 002569 335 SHHSIPELAQTVANECGGLPLALITIG 361 (906)
Q Consensus 335 ~~~~~~~~~~~i~~~c~G~Plai~~~~ 361 (906)
+ ...++..++|.|..+..+.
T Consensus 207 ------~-~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 207 ------D-ADALLAEAGGAPLAALALA 226 (342)
T ss_pred ------h-HHHHHHHcCCCHHHHHHHH
Confidence 1 2335788999998665443
No 249
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.31 E-value=0.029 Score=56.79 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=34.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCccc
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQ 225 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 225 (906)
..-.++.|.|.+|+||||+|.+++.... ..-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCCH
Confidence 3568999999999999999999988762 3345788887655543
No 250
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.29 E-value=0.022 Score=60.95 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=45.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhccc---CCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCC
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVD---NPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLY 240 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~ 240 (906)
..-.++-|+|.+|+|||+|+.+++-.... ....-..++||+....|.+.++.+ ++++++..
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 35688999999999999999988654311 011235889999999999888755 56777654
No 251
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.28 E-value=0.047 Score=62.81 Aligned_cols=45 Identities=20% Similarity=0.325 Sum_probs=37.5
Q ss_pred cccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 160 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+++|.+..++.+...+... ...-|.|+|+.|+|||++|+.+++..
T Consensus 66 ~iiGqs~~i~~l~~al~~~-~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP-NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4899999999988877654 45567899999999999999998754
No 252
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.73 Score=49.99 Aligned_cols=148 Identities=15% Similarity=0.121 Sum_probs=80.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHh
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTL 260 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 260 (906)
.|--..+|++|.|||+++.++++.+ .|+..- +..+..-+-.+ ++.++..
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L-----~ydIyd-LeLt~v~~n~d-Lr~LL~~------------------------ 283 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL-----NYDIYD-LELTEVKLDSD-LRHLLLA------------------------ 283 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc-----CCceEE-eeeccccCcHH-HHHHHHh------------------------
Confidence 4667899999999999999999987 454221 22211111111 2222211
Q ss_pred ccCcEEEEEccccchhh--------------------hhhcCCcC---CC---CcEEEE-Eecccccc-----cCCCccc
Q 002569 261 SKKKFVLLLDDLWERVD--------------------LKKVGVPL---PK---NSAVVF-TTRFVDVC-----GGMEARR 308 (906)
Q Consensus 261 ~~kr~LlVlDdv~~~~~--------------------~~~~~~~~---~~---gs~iiv-TtR~~~v~-----~~~~~~~ 308 (906)
...|-+||+.|++-..+ +.-+...+ .. +=|||| ||...+-. +.-.-..
T Consensus 284 t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDm 363 (457)
T KOG0743|consen 284 TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDM 363 (457)
T ss_pred CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCccee
Confidence 12455667777643211 00011100 00 235555 66644332 2112345
Q ss_pred eEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHHHHhh
Q 002569 309 KFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIGRAMA 365 (906)
Q Consensus 309 ~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~ 365 (906)
.+.+.--+.+.-..|+.+..+... + ..+..+|.+.-.|.-+.=..+++.|-
T Consensus 364 hI~mgyCtf~~fK~La~nYL~~~~--~----h~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 364 HIYMGYCTFEAFKTLASNYLGIEE--D----HRLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred EEEcCCCCHHHHHHHHHHhcCCCC--C----cchhHHHHHHhhcCccCHHHHHHHHh
Confidence 788999999999999999987643 1 34556666655665444445555443
No 253
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.25 E-value=0.0096 Score=57.94 Aligned_cols=37 Identities=24% Similarity=0.492 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEE
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVV 219 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 219 (906)
...+|.+.|+.|+||||+|+.+++.+ ...+..++++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEe
Confidence 45799999999999999999999988 34555556653
No 254
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.02 Score=58.33 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=51.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCC--CCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHH
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNP--TDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFK 258 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 258 (906)
-++|.++|++|.|||+|+++++... .++ ..+....-+.+. ...++.+.... ...-...+.+++.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEin----shsLFSKWFsE--------SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEIN----SHSLFSKWFSE--------SGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEe----hhHHHHHHHhh--------hhhHHHHHHHHHHH
Confidence 4899999999999999999999988 332 333333333332 23344433332 22345556667777
Q ss_pred HhccCc--EEEEEccccc
Q 002569 259 TLSKKK--FVLLLDDLWE 274 (906)
Q Consensus 259 ~l~~kr--~LlVlDdv~~ 274 (906)
.+..+. +.+.+|.|..
T Consensus 244 Lv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHhCCCcEEEEEeHHHHH
Confidence 776654 5667888854
No 255
>PRK06696 uridine kinase; Validated
Probab=96.19 E-value=0.0073 Score=61.24 Aligned_cols=43 Identities=12% Similarity=0.235 Sum_probs=35.9
Q ss_pred chhHHHHHHHHHHhc--CCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 163 GLQSQLEQVWRCLVQ--EPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 163 gr~~~~~~l~~~L~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.|++.+++|.+.+.. .+...+|+|.|.+|+||||+|+.+...+
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 366777888887754 3468899999999999999999999987
No 256
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.17 E-value=0.053 Score=53.55 Aligned_cols=168 Identities=14% Similarity=0.237 Sum_probs=95.2
Q ss_pred CcccchhHHHHH---HHHHHhcC-----CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHH
Q 002569 159 PTVVGLQSQLEQ---VWRCLVQE-----PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQ 230 (906)
Q Consensus 159 ~~~vgr~~~~~~---l~~~L~~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~ 230 (906)
++++|.+..+.+ |++.|.+. -..+-|..+|++|.|||.+|+++++.. + -.| +.+.. .++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~-k--vp~-----l~vka----t~l- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA-K--VPL-----LLVKA----TEL- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc-C--Cce-----EEech----HHH-
Confidence 357898876654 56666552 468899999999999999999999987 2 222 22211 111
Q ss_pred HHHHHHhCCCCCccccCCHHHHHHHHHHHh-ccCcEEEEEccccch----------hhhhhcC---------CcCCCCcE
Q 002569 231 ETIGKKIGLYTDSWKDRSLEEKAQDIFKTL-SKKKFVLLLDDLWER----------VDLKKVG---------VPLPKNSA 290 (906)
Q Consensus 231 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~----------~~~~~~~---------~~~~~gs~ 290 (906)
|-+.. .+....+..+.+.- +.-++++.+|.++.. .+..++. ..-..|..
T Consensus 188 --iGehV---------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 188 --IGEHV---------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred --HHHHh---------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 11111 12223333343332 346899999987532 1111111 11112777
Q ss_pred EEEEecccccccCC---CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCCh
Q 002569 291 VVFTTRFVDVCGGM---EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLP 354 (906)
Q Consensus 291 iivTtR~~~v~~~~---~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~P 354 (906)
.|-+|.+....... .-..-++..--+++|-.+++...+..-..... .-.+.++++.+|..
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~----~~~~~~~~~t~g~S 319 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD----ADLRYLAAKTKGMS 319 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc----cCHHHHHHHhCCCC
Confidence 77777766554321 11234566666788888888888754432222 22566677777654
No 257
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.15 E-value=0.029 Score=54.89 Aligned_cols=47 Identities=28% Similarity=0.449 Sum_probs=37.6
Q ss_pred CcccchhHHHHHHHHHHh---cCCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 159 PTVVGLQSQLEQVWRCLV---QEPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
..++|.|...+.+++--. .+..-.-|..||.-|.|||+|++++.+.+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 357999988888876543 23245678899999999999999999988
No 258
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.15 E-value=0.014 Score=60.67 Aligned_cols=128 Identities=17% Similarity=0.223 Sum_probs=70.6
Q ss_pred chhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEE----EEeCCccc-----HHHH----
Q 002569 163 GLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIW----VVVSKDLQ-----LEKI---- 229 (906)
Q Consensus 163 gr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w----v~~s~~~~-----~~~l---- 229 (906)
+|..+..--+++|.++ ++..|.+.|.+|.|||.||-+..=...-.+..|..++- +.++++.. .++=
T Consensus 228 prn~eQ~~ALdlLld~-dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PW 306 (436)
T COG1875 228 PRNAEQRVALDLLLDD-DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPW 306 (436)
T ss_pred cccHHHHHHHHHhcCC-CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccch
Confidence 4555666667778877 89999999999999998875543222112344543332 12333211 1111
Q ss_pred HHHHHH---HhCCCCCccccCCHHHHHHHH----------HHHhccC---cEEEEEccccc--hhhhhhcCCcCCCCcEE
Q 002569 230 QETIGK---KIGLYTDSWKDRSLEEKAQDI----------FKTLSKK---KFVLLLDDLWE--RVDLKKVGVPLPKNSAV 291 (906)
Q Consensus 230 ~~~i~~---~l~~~~~~~~~~~~~~~~~~l----------~~~l~~k---r~LlVlDdv~~--~~~~~~~~~~~~~gs~i 291 (906)
.+.|.. .+... .... ....+.+ ..+.+++ +.++|+|...+ ..+...+....+.||||
T Consensus 307 mq~i~DnLE~L~~~----~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR~G~GsKI 381 (436)
T COG1875 307 MQAIFDNLEVLFSP----NEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTRAGEGSKI 381 (436)
T ss_pred HHHHHhHHHHHhcc----cccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHhccCCCEE
Confidence 111111 11111 1111 1111111 1223444 46999999986 46777777777889999
Q ss_pred EEEec
Q 002569 292 VFTTR 296 (906)
Q Consensus 292 ivTtR 296 (906)
+.|--
T Consensus 382 Vl~gd 386 (436)
T COG1875 382 VLTGD 386 (436)
T ss_pred EEcCC
Confidence 98875
No 259
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.12 E-value=0.036 Score=56.85 Aligned_cols=92 Identities=17% Similarity=0.307 Sum_probs=56.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCC-CEEEEEEeCCcc-cHHHHHHHHHHHhCCCCC----ccccCCHH---
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF-DSVIWVVVSKDL-QLEKIQETIGKKIGLYTD----SWKDRSLE--- 250 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~--- 250 (906)
+-.-++|+|..|+|||||++.+++... .+| +.++++-+.+.. .+.++.+++.+.-.+... ...+.+..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~---~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIA---KAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHH---hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 457789999999999999999999872 234 456666676654 456666666543221100 00111111
Q ss_pred ---HHHHHHHHHh---ccCcEEEEEccccc
Q 002569 251 ---EKAQDIFKTL---SKKKFVLLLDDLWE 274 (906)
Q Consensus 251 ---~~~~~l~~~l---~~kr~LlVlDdv~~ 274 (906)
..+-.+.+++ +++.+|+++||+-.
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1122333444 38899999999854
No 260
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.10 E-value=0.013 Score=66.11 Aligned_cols=73 Identities=26% Similarity=0.382 Sum_probs=53.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHH
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFK 258 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 258 (906)
+.-++..++|++|+||||||..+++.. .| .++-|+.|+......+-..|...+....
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s----------------- 380 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS----------------- 380 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-----------------
Confidence 356899999999999999999998875 34 3677888887777766666665543221
Q ss_pred Hh--ccCcEEEEEccccc
Q 002569 259 TL--SKKKFVLLLDDLWE 274 (906)
Q Consensus 259 ~l--~~kr~LlVlDdv~~ 274 (906)
.+ .+++.-||+|.++.
T Consensus 381 ~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 381 VLDADSRPVCLVIDEIDG 398 (877)
T ss_pred ccccCCCcceEEEecccC
Confidence 12 25788899999864
No 261
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.07 E-value=0.025 Score=69.13 Aligned_cols=62 Identities=27% Similarity=0.393 Sum_probs=45.7
Q ss_pred CcccchhHHHHHHHHHHhcC------C--CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCc
Q 002569 159 PTVVGLQSQLEQVWRCLVQE------P--AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKD 223 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 223 (906)
..++|.+..++.+...+... + ...++.++|+.|+|||++|+.+..... ..-...+.++++..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~---~~~~~~i~~d~s~~ 634 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF---DDEDAMVRIDMSEY 634 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc---CCCCcEEEEechhh
Confidence 45899999999999888541 1 245788999999999999999998762 22334555665543
No 262
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.05 E-value=0.025 Score=68.96 Aligned_cols=105 Identities=20% Similarity=0.316 Sum_probs=61.1
Q ss_pred CcccchhHHHHHHHHHHhc------CC--CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHH
Q 002569 159 PTVVGLQSQLEQVWRCLVQ------EP--AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQ 230 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~------~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~ 230 (906)
..++|.+..++.+...+.. ++ ...++.++|+.|+|||+||+.+++..- ..-...+.++.+...+...+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~---~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF---GSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc---CCccceEEEEchhccccccHH
Confidence 4589999999999888752 11 235678999999999999999998761 222344555554432222211
Q ss_pred HHHHHHhCCCCCccccCCHHHHHHHHHHHhccCc-EEEEEccccc
Q 002569 231 ETIGKKIGLYTDSWKDRSLEEKAQDIFKTLSKKK-FVLLLDDLWE 274 (906)
Q Consensus 231 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~ 274 (906)
+ -++.+. .....+. ...+.+.++.++ -+++||++..
T Consensus 586 ~----l~g~~~-gyvg~~~---~~~l~~~~~~~p~~VvllDeiek 622 (821)
T CHL00095 586 K----LIGSPP-GYVGYNE---GGQLTEAVRKKPYTVVLFDEIEK 622 (821)
T ss_pred H----hcCCCC-cccCcCc---cchHHHHHHhCCCeEEEECChhh
Confidence 1 112111 0111111 113445555565 4889999975
No 263
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.04 E-value=0.045 Score=56.64 Aligned_cols=128 Identities=16% Similarity=0.097 Sum_probs=68.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC-CCCCcc--
Q 002569 168 LEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG-LYTDSW-- 244 (906)
Q Consensus 168 ~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~-~~~~~~-- 244 (906)
.+.++..+....+..-++|+|+.|.|||||.+.+..... .....+++.-.+ ....+-..+++.... ......
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~~~~~ 172 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKK-VGIVDERSEIAGCVNGVPQHDVGI 172 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEE-eecchhHHHHHHHhcccccccccc
Confidence 445555555443567899999999999999999998762 223334432111 000011123322221 111110
Q ss_pred --ccCCHHHHHHHHHHHhc-cCcEEEEEccccchhhhhhcCCcCCCCcEEEEEeccccc
Q 002569 245 --KDRSLEEKAQDIFKTLS-KKKFVLLLDDLWERVDLKKVGVPLPKNSAVVFTTRFVDV 300 (906)
Q Consensus 245 --~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~~~~~~gs~iivTtR~~~v 300 (906)
+..+.......+...+. ..+-++++|.+.....+..+...+..|..||+||-+..+
T Consensus 173 r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 173 RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGRDV 231 (270)
T ss_pred cccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEechhHH
Confidence 00010111222333333 478899999997766565554444458889999875444
No 264
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.04 E-value=0.036 Score=58.71 Aligned_cols=113 Identities=24% Similarity=0.256 Sum_probs=65.0
Q ss_pred chhHHHHHHHHHHhc---CCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCC
Q 002569 163 GLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGL 239 (906)
Q Consensus 163 gr~~~~~~l~~~L~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~ 239 (906)
++....+...+++.. +...+-+.++|..|+|||.||.++++... ...+ .+.|+.+ .+++.++.....-
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~-~v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGV-SSTLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCC-CEEEEEH------HHHHHHHHHHHhc
Confidence 455555555566643 12456899999999999999999999983 2233 3556654 3555555554421
Q ss_pred CCCccccCCHHHHHHHHHHHhccCcEEEEEccccch--hhhhh--cCCcC-----CCCcEEEEEec
Q 002569 240 YTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWER--VDLKK--VGVPL-----PKNSAVVFTTR 296 (906)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--~~~~~--~~~~~-----~~gs~iivTtR 296 (906)
.+..+... .+ .+-=||||||+... .+|.. +...+ ..+-.+|+||.
T Consensus 206 -------~~~~~~l~----~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 -------GSVKEKID----AV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred -------CcHHHHHH----Hh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 12222222 22 24458999999532 33432 21111 12556777776
No 265
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.01 E-value=0.11 Score=58.68 Aligned_cols=170 Identities=17% Similarity=0.134 Sum_probs=89.2
Q ss_pred cccchhHHHHHHHHHHh---c-----C-CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHH
Q 002569 160 TVVGLQSQLEQVWRCLV---Q-----E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQ 230 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~---~-----~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~ 230 (906)
++.|.+..++.+.+... . + ...+-|.++|++|+|||.+|+++++.. ...| +-+..+ .+.
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~l~ 296 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------KLF 296 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------Hhc
Confidence 46777766655544221 1 1 245779999999999999999999986 1222 222221 111
Q ss_pred HHHHHHhCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccchhh--------------hhhcCCcCC---CCcEEEE
Q 002569 231 ETIGKKIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWERVD--------------LKKVGVPLP---KNSAVVF 293 (906)
Q Consensus 231 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~~~~~---~gs~iiv 293 (906)
... ...+...+.+.+...-...+++|++|+++.... +..+...+. .+.-||.
T Consensus 297 ----~~~-------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 297 ----GGI-------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred ----ccc-------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 100 111222222223222235789999999863210 001111111 1334555
Q ss_pred Eecccccc-----cCCCccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCCh
Q 002569 294 TTRFVDVC-----GGMEARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLP 354 (906)
Q Consensus 294 TtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~P 354 (906)
||.+.... +.-.-...+.++.-+.++-.++|..+.......... ......+++.+.|.-
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 66544321 111123567888888888888998887543211100 122466777777664
No 266
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.00 E-value=0.017 Score=52.76 Aligned_cols=96 Identities=21% Similarity=0.398 Sum_probs=30.3
Q ss_pred CCCCCCceEEEeecCCCccccccccCCCCceeEEEccCcccccccc-cccccccccceeecccCcccccC-hhhhCCCCC
Q 002569 534 VPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLP-MGISKLVSLQLLDISKTSVVELP-EELKALVNL 611 (906)
Q Consensus 534 ~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L 611 (906)
+..+++|+.+.+..+ +..++...|.+++.|+.+.+..+ +..++ ..+..+.+|+.+++..+ +..++ ..+.+. +|
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l 105 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NL 105 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T-
T ss_pred ccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccccccccCcc-ccEEchhhhcCC-Cc
Confidence 344444555555443 44444444555544555555332 22222 12333445555554432 33332 223333 44
Q ss_pred cEecccccccccccChhhhcCCCCC
Q 002569 612 KCLNLDWAKELVVVPQQLLSNFSRL 636 (906)
Q Consensus 612 ~~L~l~~~~~l~~lp~~~i~~l~~L 636 (906)
+.+.+.. .+..++...+.++++|
T Consensus 106 ~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 106 KEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp -EEE-TT--B-SS----GGG-----
T ss_pred eEEEECC--CccEECCccccccccC
Confidence 4444432 2333444434444433
No 267
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.017 Score=64.95 Aligned_cols=73 Identities=30% Similarity=0.274 Sum_probs=51.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcc--cHHHHHHHHHHHhCCCCCccccCCHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDL--QLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIF 257 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 257 (906)
..+-|.+.|+.|+|||+||+++++... +.+.-++.+|+++.-. .++.+++.+. ..+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~-------------------~vfs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLN-------------------NVFS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHH-------------------HHHH
Confidence 457789999999999999999999983 5666778888877532 1222222222 1223
Q ss_pred HHhccCcEEEEEcccc
Q 002569 258 KTLSKKKFVLLLDDLW 273 (906)
Q Consensus 258 ~~l~~kr~LlVlDdv~ 273 (906)
+.+.-.+-+|||||++
T Consensus 489 e~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLD 504 (952)
T ss_pred HHHhhCCcEEEEcchh
Confidence 3455678899999985
No 268
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.97 E-value=0.036 Score=59.07 Aligned_cols=60 Identities=18% Similarity=0.313 Sum_probs=42.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCC----CCCCEEEEEEeCCcccHHHHHHHHHHHhCCC
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNP----TDFDSVIWVVVSKDLQLEKIQETIGKKIGLY 240 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~ 240 (906)
+...++.|+|.+|+|||||+..++... ... ..-..++|++....+...++ .++++.++..
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~-~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~ 157 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTC-QLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLN 157 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHH-hhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCC
Confidence 457899999999999999999887643 111 11236799998887777764 4456665543
No 269
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.97 E-value=0.02 Score=56.13 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=45.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKT 259 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 259 (906)
++.+|+|.|.+|+||||+|+.++..+ . ..+-.+ ++-..-+ ...-.....+.....-+.....+.+-+.+.|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~-~--~~~~~~--I~~D~YY-k~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL-G--VEKVVV--ISLDDYY-KDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh-C--cCcceE--eeccccc-cchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 45799999999999999999999998 2 222112 1111111 1111111222222222233455666777788888
Q ss_pred hccCc
Q 002569 260 LSKKK 264 (906)
Q Consensus 260 l~~kr 264 (906)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 87776
No 270
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.94 E-value=0.038 Score=55.77 Aligned_cols=122 Identities=17% Similarity=0.167 Sum_probs=71.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCC-----cccHHHHHHHHHHHhCCCCCcc----ccCCHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSK-----DLQLEKIQETIGKKIGLYTDSW----KDRSLE 250 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-----~~~~~~l~~~i~~~l~~~~~~~----~~~~~~ 250 (906)
+..+++++|.+|+||||+++.+..-. ..-...+++...+ .....+-..++++..++..+.. ..-+-.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~----~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE----EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc----CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 56899999999999999999998876 2233344443222 2223445566777776543211 112222
Q ss_pred HHHH-HHHHHhccCcEEEEEccccchhh------hhhcCCcCCC--CcEEEEEecccccccCCC
Q 002569 251 EKAQ-DIFKTLSKKKFVLLLDDLWERVD------LKKVGVPLPK--NSAVVFTTRFVDVCGGME 305 (906)
Q Consensus 251 ~~~~-~l~~~l~~kr~LlVlDdv~~~~~------~~~~~~~~~~--gs~iivTtR~~~v~~~~~ 305 (906)
+.++ .+.+.+.-++-++|.|..-+.-+ .-.+...+.. |-..+..|-+-.+++.+.
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 3332 45567788999999998644311 1111111111 667777777766666543
No 271
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.90 E-value=0.42 Score=48.08 Aligned_cols=204 Identities=14% Similarity=0.175 Sum_probs=113.6
Q ss_pred ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccC---CCCCCEEEEEEeCCc--------------
Q 002569 161 VVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN---PTDFDSVIWVVVSKD-------------- 223 (906)
Q Consensus 161 ~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~-------------- 223 (906)
+.++++....+....... +.+-..++|+.|.||-|.+..+.+..--+ +-.-+..-|.+.+..
T Consensus 15 l~~~~e~~~~Lksl~~~~-d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTG-DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred cccHHHHHHHHHHhcccC-CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 567777777776665533 78999999999999999887777665210 112234445443322
Q ss_pred -------ccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHhccCcE-EEEEccccch--hhhhhcC---CcCCCCcE
Q 002569 224 -------LQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTLSKKKF-VLLLDDLWER--VDLKKVG---VPLPKNSA 290 (906)
Q Consensus 224 -------~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~--~~~~~~~---~~~~~gs~ 290 (906)
..-+-+.++|++..+-... + +.-..+.| ++|+-.+++. +.-..++ ......+|
T Consensus 94 itPSDaG~~DRvViQellKevAQt~q-------------i-e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~R 159 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQ-------------I-ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCR 159 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcc-------------h-hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCce
Confidence 0112233333333321110 0 00112344 5555555432 1111221 11122677
Q ss_pred EEEEeccc-ccccCC-CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChH-HHHHHHHHhhcC
Q 002569 291 VVFTTRFV-DVCGGM-EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPL-ALITIGRAMAYK 367 (906)
Q Consensus 291 iivTtR~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Pl-ai~~~~~~l~~~ 367 (906)
+|+...+. .+...+ +..-.++++..+++|....+.+.+..+....+ ++++.+|+++++|+-- |+-++ ..++.+
T Consensus 160 lIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllml-E~~~~~ 235 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLML-EAVRVN 235 (351)
T ss_pred EEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHH-HHHHhc
Confidence 77644321 111111 12345789999999999999998877664444 8999999999999753 44333 222221
Q ss_pred ----------CCHHHHHHHHHHHhhh
Q 002569 368 ----------KTPEEWRYAIEVLRRS 383 (906)
Q Consensus 368 ----------~~~~~w~~~~~~l~~~ 383 (906)
-..-+|+-++.++...
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHHHH
Confidence 1456899988877655
No 272
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.89 E-value=0.058 Score=57.92 Aligned_cols=59 Identities=22% Similarity=0.428 Sum_probs=43.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCC----CCEEEEEEeCCcccHHHHHHHHHHHhCC
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD----FDSVIWVVVSKDLQLEKIQETIGKKIGL 239 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~~l~~~i~~~l~~ 239 (906)
+...++-|+|++|+|||+++.+++.... .... -..++||+....+++.++.+ ++++++.
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~-~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQ-LPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhc-cccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 3578999999999999999999987652 1111 14899999988888777654 4455543
No 273
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.88 E-value=0.051 Score=55.63 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=36.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHH
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETI 233 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i 233 (906)
+.-.++.|.|.+|+|||++|.++..... ..-..++||+... ++.++.+.+
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHHH
Confidence 4678999999999999999998765541 3356788888765 345555543
No 274
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.87 E-value=0.067 Score=52.90 Aligned_cols=81 Identities=16% Similarity=0.132 Sum_probs=45.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCC---EEEEEEeCCcccHHHHHHHHHHHh--CCCCCccccCCHHHHHHHHH
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFD---SVIWVVVSKDLQLEKIQETIGKKI--GLYTDSWKDRSLEEKAQDIF 257 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~---~~~wv~~s~~~~~~~l~~~i~~~l--~~~~~~~~~~~~~~~~~~l~ 257 (906)
||+|.|.+|+||||+|+.+...+. +.... ....+.............. -... ....+....-+.+.+.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~--~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN--KRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--TCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--ccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 799999999999999999999883 12222 2333333332222222221 1111 11112234566777777777
Q ss_pred HHhccCcEE
Q 002569 258 KTLSKKKFV 266 (906)
Q Consensus 258 ~~l~~kr~L 266 (906)
....++.+-
T Consensus 78 ~L~~g~~i~ 86 (194)
T PF00485_consen 78 ALKNGGSIE 86 (194)
T ss_dssp HHHTTSCEE
T ss_pred HHhCCCccc
Confidence 766666543
No 275
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.86 E-value=0.029 Score=55.43 Aligned_cols=114 Identities=19% Similarity=0.228 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccC
Q 002569 168 LEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDR 247 (906)
Q Consensus 168 ~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~ 247 (906)
..+.+..+... .-+++.|.|.+|.||||+++.+..... .. . ..++++ .....-... +.+..+... .
T Consensus 6 Q~~a~~~~l~~-~~~~~~l~G~aGtGKT~~l~~~~~~~~-~~-g-~~v~~~-apT~~Aa~~----L~~~~~~~a-----~ 71 (196)
T PF13604_consen 6 QREAVRAILTS-GDRVSVLQGPAGTGKTTLLKALAEALE-AA-G-KRVIGL-APTNKAAKE----LREKTGIEA-----Q 71 (196)
T ss_dssp HHHHHHHHHHC-TCSEEEEEESTTSTHHHHHHHHHHHHH-HT-T---EEEE-ESSHHHHHH----HHHHHTS-E-----E
T ss_pred HHHHHHHHHhc-CCeEEEEEECCCCCHHHHHHHHHHHHH-hC-C-CeEEEE-CCcHHHHHH----HHHhhCcch-----h
Confidence 33444444333 457899999999999999999888773 21 2 233333 332222223 333332211 1
Q ss_pred CHHHHHHHHHHH-h-----ccCcEEEEEccccch--hhhhhcCCcCCC-CcEEEEEe
Q 002569 248 SLEEKAQDIFKT-L-----SKKKFVLLLDDLWER--VDLKKVGVPLPK-NSAVVFTT 295 (906)
Q Consensus 248 ~~~~~~~~l~~~-l-----~~kr~LlVlDdv~~~--~~~~~~~~~~~~-gs~iivTt 295 (906)
+........... . ..++-+||+|++.-. ..+..+...... |+++|+.-
T Consensus 72 Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilvG 128 (196)
T PF13604_consen 72 TIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILVG 128 (196)
T ss_dssp EHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE
T ss_pred hHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEEC
Confidence 111100000000 0 123459999999743 455555444444 78887654
No 276
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.16 Score=50.08 Aligned_cols=54 Identities=28% Similarity=0.446 Sum_probs=41.2
Q ss_pred ccCCCCC--CcccchhHHHHHHHHHHhcC------------CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 152 ADERPTE--PTVVGLQSQLEQVWRCLVQE------------PAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 152 ~~~~~~~--~~~vgr~~~~~~l~~~L~~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
++++|.+ +++-|-++.++++++.+.-. ...+-+..+|++|.|||-+|++.+..-
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 3455554 35678899999999887310 346778999999999999999987764
No 277
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.83 E-value=0.014 Score=61.67 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
....++|||++|+|||.+|+++++..
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999999997
No 278
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.82 E-value=0.004 Score=36.65 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=7.7
Q ss_pred eeEEEccCccccccccccc
Q 002569 564 LTVLKMSDNETLRQLPMGI 582 (906)
Q Consensus 564 L~~L~Ls~~~~i~~lp~~i 582 (906)
|++|||++| .++.+|.+|
T Consensus 2 L~~Ldls~n-~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSSF 19 (22)
T ss_dssp ESEEEETSS-EESEEGTTT
T ss_pred ccEEECCCC-cCEeCChhh
Confidence 344444444 444444333
No 279
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.80 E-value=0.061 Score=59.63 Aligned_cols=89 Identities=21% Similarity=0.235 Sum_probs=51.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCc-ccHHHHHHHHHHHhCCCCCcc-ccCCHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKD-LQLEKIQETIGKKIGLYTDSW-KDRSLEEKAQDIF 257 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 257 (906)
...+|.++|..|+||||+|..++..+. . ..+ .++.|++... ....+.++.++.+++.+.... ...+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~-~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK-K-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-H-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 468999999999999999999998873 2 223 4444544321 223455666677766542211 1223333333333
Q ss_pred HHhccCcEEEEEccc
Q 002569 258 KTLSKKKFVLLLDDL 272 (906)
Q Consensus 258 ~~l~~kr~LlVlDdv 272 (906)
+...+. -+||+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 333333 56788876
No 280
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.22 Score=57.94 Aligned_cols=171 Identities=16% Similarity=0.195 Sum_probs=99.7
Q ss_pred cccchhHHHHHHH---HHHhcC--------CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHH
Q 002569 160 TVVGLQSQLEQVW---RCLVQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEK 228 (906)
Q Consensus 160 ~~vgr~~~~~~l~---~~L~~~--------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 228 (906)
++.|.++.+++|. +.|.++ .-++-+.++|++|.|||-||++++... . +-|+.++..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-g-------VPF~svSGS----- 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G-------VPFFSVSGS----- 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-C-------CceeeechH-----
Confidence 5778876665555 455442 236789999999999999999999886 2 334555543
Q ss_pred HHHHHHHHhCCCCCccccCCHHHHHHHHHHHh-ccCcEEEEEccccchhh-----------------hhhcCCc---CCC
Q 002569 229 IQETIGKKIGLYTDSWKDRSLEEKAQDIFKTL-SKKKFVLLLDDLWERVD-----------------LKKVGVP---LPK 287 (906)
Q Consensus 229 l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~-----------------~~~~~~~---~~~ 287 (906)
+..+.+... . ...++.+...- ...+.++.+|+++...- +.++..- +..
T Consensus 379 ---EFvE~~~g~-------~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 ---EFVEMFVGV-------G-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred ---HHHHHhccc-------c-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 222222111 0 12222232222 34678999998753211 1111110 111
Q ss_pred --CcEEEEEecccccccC----CC-ccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHH
Q 002569 288 --NSAVVFTTRFVDVCGG----ME-ARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLAL 357 (906)
Q Consensus 288 --gs~iivTtR~~~v~~~----~~-~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai 357 (906)
+.-++-+|+..++.+. .+ -...+.++.=+..+-.++|..++...... .+..++++ |+...-|.+=|.
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 2334446665555332 12 24567788888888889999988765422 34466677 888988888664
No 281
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.78 E-value=0.0099 Score=58.88 Aligned_cols=143 Identities=17% Similarity=0.140 Sum_probs=64.7
Q ss_pred cccccccceeecccCccc-ccCh----hhhCCCCCcEecccccccccccChhhh-------------cCCCCCceeeccc
Q 002569 582 ISKLVSLQLLDISKTSVV-ELPE----ELKALVNLKCLNLDWAKELVVVPQQLL-------------SNFSRLRVLRMFA 643 (906)
Q Consensus 582 i~~L~~L~~L~L~~~~i~-~lp~----~i~~L~~L~~L~l~~~~~l~~lp~~~i-------------~~l~~L~~L~l~~ 643 (906)
+-++++|+..+||.|-+. +.|. -|++-+.|.||.+++| .+..+..+-| ..-+.|+......
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 344566666666666444 3332 3445556666666655 3332221111 1234455555544
Q ss_pred ccccCCCCCCCccccccHHhhcCCCCccEEEEEEechhh--HHHHh-hcccccccceeeEecccCCCcc--ccc-ccccc
Q 002569 644 IGVRSPYGLSSSWHENVAEELLGLKYLEVLEITFRSFKA--YQTFL-SSQKLRSCTQALLLDEFDREES--IDV-ADLAD 717 (906)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~-~~~~~~~~L~~L~L~~~~~~~~--~~~-~~l~~ 717 (906)
|.+... ........+....+|+++.+..|.+.. +..+. -....+.+|+.|+|.+|..... .-+ ..+..
T Consensus 167 NRleng------s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~ 240 (388)
T COG5238 167 NRLENG------SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE 240 (388)
T ss_pred chhccC------cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc
Confidence 432210 011122233444566666666666532 12211 1122344666666666543111 000 12334
Q ss_pred cCCCcEEEecCCCC
Q 002569 718 LEQLNTLSFVGCDW 731 (906)
Q Consensus 718 l~~L~~L~l~~~~~ 731 (906)
.+.|+.|.+..|-.
T Consensus 241 W~~lrEL~lnDCll 254 (388)
T COG5238 241 WNLLRELRLNDCLL 254 (388)
T ss_pred cchhhhccccchhh
Confidence 45577777777643
No 282
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.77 E-value=0.037 Score=60.20 Aligned_cols=85 Identities=24% Similarity=0.377 Sum_probs=52.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCcc---ccCCHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KDRSLEEKAQDI 256 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l 256 (906)
.-.++.|.|.+|+|||||+.+++.... .....++|++.... ...+ ..-+.+++...+.. ...+.+.+.+.+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 457999999999999999999988763 23357888876543 3333 22244555433221 123334443333
Q ss_pred HHHhccCcEEEEEcccc
Q 002569 257 FKTLSKKKFVLLLDDLW 273 (906)
Q Consensus 257 ~~~l~~kr~LlVlDdv~ 273 (906)
. ..+.-++|+|.+.
T Consensus 155 ~---~~~~~lVVIDSIq 168 (372)
T cd01121 155 E---ELKPDLVIIDSIQ 168 (372)
T ss_pred H---hcCCcEEEEcchH
Confidence 2 2356688888873
No 283
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.77 E-value=0.045 Score=54.42 Aligned_cols=96 Identities=25% Similarity=0.340 Sum_probs=59.1
Q ss_pred HHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCc-ccHHHHHHHHHHHhCCCCC----ccc
Q 002569 171 VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKD-LQLEKIQETIGKKIGLYTD----SWK 245 (906)
Q Consensus 171 l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~----~~~ 245 (906)
.++.+..=.+-..++|.|.+|+|||+|+..+.+.. .-+.++++.+++. ....++.+++...-..... ...
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~ 79 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATS 79 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEET
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccc
Confidence 34555431244788999999999999999999986 2345588888765 4566666666443111100 001
Q ss_pred cCCHH----------HHHHHHHHHhccCcEEEEEcccc
Q 002569 246 DRSLE----------EKAQDIFKTLSKKKFVLLLDDLW 273 (906)
Q Consensus 246 ~~~~~----------~~~~~l~~~l~~kr~LlVlDdv~ 273 (906)
+.+.. ..++.++. +++.+|+++||+.
T Consensus 80 ~~~~~~r~~~~~~a~t~AEyfrd--~G~dVlli~Dslt 115 (215)
T PF00006_consen 80 DEPPAARYRAPYTALTIAEYFRD--QGKDVLLIIDSLT 115 (215)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHH--TTSEEEEEEETHH
T ss_pred hhhHHHHhhhhccchhhhHHHhh--cCCceeehhhhhH
Confidence 11211 22233333 6899999999984
No 284
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.21 Score=56.39 Aligned_cols=142 Identities=19% Similarity=0.178 Sum_probs=75.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHH
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFK 258 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 258 (906)
...+-|..+|++|+|||++|+++++.. ...| +.++.+ +++ ... ...++..+.+.+.+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgp----EL~----sk~-------vGeSEr~ir~iF~k 522 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGP----ELF----SKY-------VGESERAIREVFRK 522 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCH----HHH----HHh-------cCchHHHHHHHHHH
Confidence 357889999999999999999999987 3444 333221 111 111 12233333334444
Q ss_pred HhccCcEEEEEccccchhh-------------h----hhcCCcCCC-CcEEEEEeccccccc--CCC---ccceEEeccC
Q 002569 259 TLSKKKFVLLLDDLWERVD-------------L----KKVGVPLPK-NSAVVFTTRFVDVCG--GME---ARRKFKVECL 315 (906)
Q Consensus 259 ~l~~kr~LlVlDdv~~~~~-------------~----~~~~~~~~~-gs~iivTtR~~~v~~--~~~---~~~~~~l~~L 315 (906)
.-+--+.++.||.++.... + .++-..-.. +.-||-.|..++... .+. -...+.++.=
T Consensus 523 AR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplP 602 (693)
T KOG0730|consen 523 ARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLP 602 (693)
T ss_pred HhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCc
Confidence 4444678888888753210 1 111111111 222333343333321 122 2345666666
Q ss_pred ChHhHHHHHHHHhccccccCCCCchHHH
Q 002569 316 SDEDAWELFREKVGEETIESHHSIPELA 343 (906)
Q Consensus 316 ~~~e~~~Lf~~~a~~~~~~~~~~~~~~~ 343 (906)
+.+.-.++|+.++........-++.+++
T Consensus 603 D~~aR~~Ilk~~~kkmp~~~~vdl~~La 630 (693)
T KOG0730|consen 603 DLEARLEILKQCAKKMPFSEDVDLEELA 630 (693)
T ss_pred cHHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 6777778999988765533333444443
No 285
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.76 E-value=0.037 Score=53.62 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=46.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCc-ccHHHHHHHHHHHhCCCCCc-cccCCHHHHH-HHHHHH
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKD-LQLEKIQETIGKKIGLYTDS-WKDRSLEEKA-QDIFKT 259 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~-~~~~~~~~~~-~~l~~~ 259 (906)
++.++|++|+||||+++.++.... ..-..++.++.... ....+.+...++..+.+-.. ....+..+.. +.+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~---~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK---KKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHA 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---HCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 688999999999999999988772 22224445554321 12333344444444432110 1123344433 333333
Q ss_pred hccCcEEEEEccccc
Q 002569 260 LSKKKFVLLLDDLWE 274 (906)
Q Consensus 260 l~~kr~LlVlDdv~~ 274 (906)
..+..-++|+|..-.
T Consensus 79 ~~~~~d~viiDt~g~ 93 (173)
T cd03115 79 REENFDVVIVDTAGR 93 (173)
T ss_pred HhCCCCEEEEECccc
Confidence 343443666777643
No 286
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.75 E-value=0.045 Score=57.50 Aligned_cols=88 Identities=25% Similarity=0.321 Sum_probs=48.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcc-cHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDL-QLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFK 258 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 258 (906)
..++++|+|+.|+||||++..++.... ....-..+..|+..... ...+-+....+.++.+.. ...+..++...+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~-~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~~ 269 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV-LEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALDR 269 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHHH
Confidence 457999999999999999999988762 11112355666654321 223333334444444321 12334444444443
Q ss_pred HhccCcEEEEEccc
Q 002569 259 TLSKKKFVLLLDDL 272 (906)
Q Consensus 259 ~l~~kr~LlVlDdv 272 (906)
. .+ .=+|++|..
T Consensus 270 ~-~~-~d~vliDt~ 281 (282)
T TIGR03499 270 L-RD-KDLILIDTA 281 (282)
T ss_pred c-cC-CCEEEEeCC
Confidence 3 33 347777753
No 287
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.75 E-value=0.062 Score=55.01 Aligned_cols=89 Identities=16% Similarity=0.250 Sum_probs=56.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCc---------------
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDS--------------- 243 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~--------------- 243 (906)
+...++.|.|.+|+|||++|.++..... ..-..++|++..+. +.++.+.+ ++++....+
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~ 96 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTE 96 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccc
Confidence 4678999999999999999999865541 23568899988764 44555543 334332110
Q ss_pred ---cccCCHHHHHHHHHHHhcc-CcEEEEEcccc
Q 002569 244 ---WKDRSLEEKAQDIFKTLSK-KKFVLLLDDLW 273 (906)
Q Consensus 244 ---~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 273 (906)
....+.+.+...+.+.+.. +.-++|+|.+.
T Consensus 97 ~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 97 GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112334555666666554 45578888764
No 288
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.74 E-value=0.49 Score=50.41 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=36.6
Q ss_pred eEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHH
Q 002569 309 KFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLAL 357 (906)
Q Consensus 309 ~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai 357 (906)
++++++++.+|+..++...+...-.......+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999988765543322344566777777779999654
No 289
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.71 E-value=0.073 Score=57.06 Aligned_cols=60 Identities=18% Similarity=0.319 Sum_probs=44.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCC----CCCCEEEEEEeCCcccHHHHHHHHHHHhCCC
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNP----TDFDSVIWVVVSKDLQLEKIQETIGKKIGLY 240 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~ 240 (906)
....++-|+|.+|+|||+++..++-.. ... ..-..++|++....+.++++. +|+++++..
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~-~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTC-QLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHh-hcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 356899999999999999998887554 111 112379999999998888764 567776654
No 290
>PRK13695 putative NTPase; Provisional
Probab=95.70 E-value=0.018 Score=55.86 Aligned_cols=23 Identities=48% Similarity=0.686 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.|+|+|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998876
No 291
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.70 E-value=0.028 Score=68.18 Aligned_cols=47 Identities=26% Similarity=0.382 Sum_probs=38.9
Q ss_pred CcccchhHHHHHHHHHHhc------C--CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 159 PTVVGLQSQLEQVWRCLVQ------E--PAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
..++|.+..++.+.+.+.. + ....++.++|+.|+|||.+|+.++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999888742 1 234579999999999999999998876
No 292
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.66 E-value=0.0024 Score=73.62 Aligned_cols=120 Identities=13% Similarity=0.034 Sum_probs=64.1
Q ss_pred hCCCCCcEecccccccccccC-hhhhcCCCCCceeecccc-cccCCCCCCCccccccHHhhcCCCCccEEEEEEec-hhh
Q 002569 606 KALVNLKCLNLDWAKELVVVP-QQLLSNFSRLRVLRMFAI-GVRSPYGLSSSWHENVAEELLGLKYLEVLEITFRS-FKA 682 (906)
Q Consensus 606 ~~L~~L~~L~l~~~~~l~~lp-~~~i~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~ 682 (906)
...++|+.|.+.+|..+.... ..+...+++|+.|++.++ ..... ...........+.+|+.|+++... ++.
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~~~~~~L~~l~l~~~~~isd 258 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITL------SPLLLLLLLSICRKLKSLDLSGCGLVTD 258 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCccccccc------chhHhhhhhhhcCCcCccchhhhhccCc
Confidence 347889999998887666522 123567889999998863 11100 011112234445677777776555 221
Q ss_pred HHHHhhcccccccceeeEecccCCCccccccc-ccccCCCcEEEecCCCCC
Q 002569 683 YQTFLSSQKLRSCTQALLLDEFDREESIDVAD-LADLEQLNTLSFVGCDWP 732 (906)
Q Consensus 683 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~ 732 (906)
. .+......++.|+.|.+.+|...++..+.. ...+++|++|++++|...
T Consensus 259 ~-~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 259 I-GLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred h-hHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 1 111111124467777766665433333222 234566777777776654
No 293
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.66 E-value=0.14 Score=60.48 Aligned_cols=167 Identities=15% Similarity=0.117 Sum_probs=87.5
Q ss_pred cccchhHHHHHHHHHH---hcC--------CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHH
Q 002569 160 TVVGLQSQLEQVWRCL---VQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEK 228 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L---~~~--------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 228 (906)
++.|.+...+++.+.+ ... .-.+-|.++|++|+||||+|+.++... ...| +.+..+.
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~~------ 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSD------ 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehHH------
Confidence 3566666555554433 221 123459999999999999999999876 2233 2222221
Q ss_pred HHHHHHHHhCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccchh----------------hhhhcC---CcCCC--
Q 002569 229 IQETIGKKIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWERV----------------DLKKVG---VPLPK-- 287 (906)
Q Consensus 229 l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~~~---~~~~~-- 287 (906)
+.. .. ...........+.......+.+|++|+++... .+..+. ..+..
T Consensus 221 ~~~----~~-------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 221 FVE----MF-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred hHH----hh-------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC
Confidence 111 00 01122223333333334568899999985421 011111 11111
Q ss_pred CcEEEEEecccccccCC-----CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCC
Q 002569 288 NSAVVFTTRFVDVCGGM-----EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGL 353 (906)
Q Consensus 288 gs~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~ 353 (906)
+.-+|.||...+..... .-...+.+..-+.++-.++++.+..........+ ...+++.+.|.
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G~ 356 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGF 356 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCCC
Confidence 44555577665442211 1235677888888888888887765443222212 23466666663
No 294
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.63 E-value=0.18 Score=53.93 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
-...+.++|+.|+||||+|+.++...
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998876
No 295
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.61 E-value=0.053 Score=59.91 Aligned_cols=92 Identities=20% Similarity=0.259 Sum_probs=48.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCc-ccHHHHHHHHHHHhCCCCCcc-ccCCHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKD-LQLEKIQETIGKKIGLYTDSW-KDRSLEEKAQDIF 257 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 257 (906)
...++.++|.+|+||||.|..++..+ ..+.. ..++.|++... +...+-+.....+.+.+.... ...++.++.....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l-~~~~g-~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL-KKKQG-KKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHhCC-CeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 46899999999999999998888775 11122 23444443321 112333334445444432111 1233444444333
Q ss_pred HHhccCcE-EEEEcccc
Q 002569 258 KTLSKKKF-VLLLDDLW 273 (906)
Q Consensus 258 ~~l~~kr~-LlVlDdv~ 273 (906)
+....+.| ++|+|-.-
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 33333334 66666653
No 296
>PRK06547 hypothetical protein; Provisional
Probab=95.54 E-value=0.02 Score=55.00 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=27.0
Q ss_pred HHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 172 WRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 172 ~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
...+... ...+|+|.|++|+||||+|+.+.+..
T Consensus 7 ~~~~~~~-~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 7 AARLCGG-GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHhhcC-CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3334444 78899999999999999999998875
No 297
>PRK10867 signal recognition particle protein; Provisional
Probab=95.52 E-value=0.057 Score=59.69 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
...+|.++|.+|+||||.+..++..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999988888766
No 298
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.52 E-value=0.019 Score=52.52 Aligned_cols=44 Identities=23% Similarity=0.442 Sum_probs=34.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCC
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLY 240 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~ 240 (906)
+|.|-|++|+||||+|+.+++.. .-.| + +.-.++++|++..|++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~-----v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL-----V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce-----e------eccHHHHHHHHHcCCC
Confidence 68999999999999999999987 1111 1 2347889999988865
No 299
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.51 E-value=0.071 Score=52.89 Aligned_cols=121 Identities=15% Similarity=0.180 Sum_probs=69.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEe----------------------CCcc-------------
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVV----------------------SKDL------------- 224 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~----------------------s~~~------------- 224 (906)
.-.+|+|+|+.|+|||||...+..-. + . -...+++.. .|.+
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld-~--p-t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~ 105 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD-K--P-TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE 105 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc-C--C-CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHH
Confidence 45799999999999999999887654 1 1 222223221 1111
Q ss_pred -----------cHHHHHHHHHHHhCCCCCc----cccCC-HHHHHHHHHHHhccCcEEEEEccccc------hhhhhhcC
Q 002569 225 -----------QLEKIQETIGKKIGLYTDS----WKDRS-LEEKAQDIFKTLSKKKFVLLLDDLWE------RVDLKKVG 282 (906)
Q Consensus 225 -----------~~~~l~~~i~~~l~~~~~~----~~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~------~~~~~~~~ 282 (906)
...+....+++.+++.... ....+ -++..-.+.+.+-..+-+|+-|+--. ......+.
T Consensus 106 lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll 185 (226)
T COG1136 106 LPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELL 185 (226)
T ss_pred hHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHH
Confidence 1233344555665654211 11222 23334456677888899999998521 12222222
Q ss_pred CcC-CC-CcEEEEEecccccccCC
Q 002569 283 VPL-PK-NSAVVFTTRFVDVCGGM 304 (906)
Q Consensus 283 ~~~-~~-gs~iivTtR~~~v~~~~ 304 (906)
..+ .. |..||+.|-+..+|..+
T Consensus 186 ~~~~~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 186 RELNKERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHhcCCEEEEEcCCHHHHHhC
Confidence 222 22 78899999998888754
No 300
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.48 E-value=0.094 Score=56.23 Aligned_cols=59 Identities=20% Similarity=0.338 Sum_probs=43.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCC----CCCEEEEEEeCCcccHHHHHHHHHHHhCC
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT----DFDSVIWVVVSKDLQLEKIQETIGKKIGL 239 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~l~~~i~~~l~~ 239 (906)
+...++-|+|.+|+||||++.+++... .... .-..++||+....+...++. ++++.++.
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 356899999999999999999998775 2111 11389999998888877765 44555554
No 301
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.31 Score=47.88 Aligned_cols=194 Identities=18% Similarity=0.290 Sum_probs=100.3
Q ss_pred cccc-hhHHHHHHHHHHhc------------CCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccH
Q 002569 160 TVVG-LQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQL 226 (906)
Q Consensus 160 ~~vg-r~~~~~~l~~~L~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 226 (906)
+++| -+..+++|.+.+.- -.+.+-+.++|++|.|||-||++|++.- .+.|+.||..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs--- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS--- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH---
Confidence 3555 46666666665421 1367889999999999999999998875 3456777653
Q ss_pred HHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHh-ccCcEEEEEccccch------------hh----hhhcCCc---CC
Q 002569 227 EKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTL-SKKKFVLLLDDLWER------------VD----LKKVGVP---LP 286 (906)
Q Consensus 227 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~------------~~----~~~~~~~---~~ 286 (906)
+-+++-|-+. ....+.+.-.- ..-+-++..|.+++. .+ .-++... |.
T Consensus 216 elvqk~igeg-------------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfe 282 (404)
T KOG0728|consen 216 ELVQKYIGEG-------------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFE 282 (404)
T ss_pred HHHHHHhhhh-------------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccc
Confidence 1112111110 11111221111 234677888877532 00 0111111 11
Q ss_pred --CCcEEEEEecccccccCC-----CccceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHH
Q 002569 287 --KNSAVVFTTRFVDVCGGM-----EARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALIT 359 (906)
Q Consensus 287 --~gs~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~ 359 (906)
.+-+||.+|..-++.... .-...++.++-+++.-.++++-+..........++..+++++.-..|.--.++.+
T Consensus 283 atknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vct 362 (404)
T KOG0728|consen 283 ATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCT 362 (404)
T ss_pred cccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhh
Confidence 167888888765554321 1235677777777766667666554333223344555555543333322334444
Q ss_pred HHHHhhc--C---CCHHHHHHHH
Q 002569 360 IGRAMAY--K---KTPEEWRYAI 377 (906)
Q Consensus 360 ~~~~l~~--~---~~~~~w~~~~ 377 (906)
=|++.+- + -+.++++-+.
T Consensus 363 eagm~alrerrvhvtqedfemav 385 (404)
T KOG0728|consen 363 EAGMYALRERRVHVTQEDFEMAV 385 (404)
T ss_pred hhhHHHHHHhhccccHHHHHHHH
Confidence 4444322 1 1445555443
No 302
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.46 E-value=0.017 Score=64.55 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=40.5
Q ss_pred cccchhHHHHHHHHHHhc-----CCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 160 TVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+++|.++.+++|++.|.. +...+++.++|++|+||||||+.+++-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 479999999999999832 2366899999999999999999999987
No 303
>PTZ00035 Rad51 protein; Provisional
Probab=95.44 E-value=0.15 Score=54.89 Aligned_cols=60 Identities=22% Similarity=0.289 Sum_probs=42.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccC----CCCCCEEEEEEeCCcccHHHHHHHHHHHhCCC
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDN----PTDFDSVIWVVVSKDLQLEKIQETIGKKIGLY 240 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~ 240 (906)
+.-.++.|+|..|+|||||+..++-.. .. ...-..++|++....+..+++ .+++++++..
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~ 179 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLD 179 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCC
Confidence 467899999999999999999887654 21 112346789998887777764 4456666543
No 304
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.033 Score=60.59 Aligned_cols=46 Identities=26% Similarity=0.315 Sum_probs=36.5
Q ss_pred cccchh---HHHHHHHHHHhcC-------C-CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 160 TVVGLQ---SQLEQVWRCLVQE-------P-AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 160 ~~vgr~---~~~~~l~~~L~~~-------~-~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
++-|-| .++++|++.|.+. + =++-|.++|++|.|||-||++|+...
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 356665 4577888888763 2 25679999999999999999999886
No 305
>PRK07667 uridine kinase; Provisional
Probab=95.43 E-value=0.022 Score=56.17 Aligned_cols=38 Identities=18% Similarity=0.402 Sum_probs=30.5
Q ss_pred HHHHHHHHhc-CCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 168 LEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 168 ~~~l~~~L~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.+.|.+.+.. .+...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556666654 2356899999999999999999999987
No 306
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.40 E-value=0.009 Score=35.14 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=16.3
Q ss_pred ccceeecccCcccccChhhhCC
Q 002569 587 SLQLLDISKTSVVELPEELKAL 608 (906)
Q Consensus 587 ~L~~L~L~~~~i~~lp~~i~~L 608 (906)
+|++|||++|+++.+|.++++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5788888888888888776543
No 307
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.40 E-value=0.019 Score=52.57 Aligned_cols=25 Identities=48% Similarity=0.539 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
..-|+|.|++|+||||+++.+.+.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3568999999999999999999988
No 308
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.39 E-value=0.047 Score=64.97 Aligned_cols=46 Identities=24% Similarity=0.360 Sum_probs=37.9
Q ss_pred cccchhHHHHHHHHHHhc------C--CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 160 TVVGLQSQLEQVWRCLVQ------E--PAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.++|.+..++.+...+.. + .....+.++|+.|+|||++|+.++...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999998888752 1 124578999999999999999998876
No 309
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.36 E-value=0.024 Score=62.58 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=39.2
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
..++||++.++.+...+..+ .-|.+.|++|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag---~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG---ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC---CCEEEECCCChhHHHHHHHHHHHh
Confidence 34899999999999888766 678899999999999999999876
No 310
>PRK04328 hypothetical protein; Provisional
Probab=95.35 E-value=0.076 Score=54.72 Aligned_cols=55 Identities=16% Similarity=0.229 Sum_probs=37.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCC
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGL 239 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~ 239 (906)
+.-.++.|.|.+|.|||+||.++..... ..-..++|++.... +.++.+ .+++++.
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~---~~ge~~lyis~ee~--~~~i~~-~~~~~g~ 75 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGVYVALEEH--PVQVRR-NMRQFGW 75 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEEeeCC--HHHHHH-HHHHcCC
Confidence 3568999999999999999998766531 33567888887664 334333 3444443
No 311
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.35 E-value=0.07 Score=53.10 Aligned_cols=61 Identities=23% Similarity=0.307 Sum_probs=39.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEE-------EeCCcccHHHH--HHHHHHHhCCCC
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWV-------VVSKDLQLEKI--QETIGKKIGLYT 241 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv-------~~s~~~~~~~l--~~~i~~~l~~~~ 241 (906)
+...|.|+||+|+||||..+.++... ..+..-..++-. ....+.++++. .++.+++.++..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl-~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL-HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH-hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 57789999999999999999998887 222222233322 12334455544 567888876654
No 312
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.35 E-value=0.061 Score=56.66 Aligned_cols=88 Identities=17% Similarity=0.189 Sum_probs=55.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCcc---ccCCHHHHHHH
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KDRSLEEKAQD 255 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~ 255 (906)
+.-+++-|+|+.|+||||||-.+..... ..-..++||+....+++. .++++|++.+.. .+.+.++....
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~~q---~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~ 122 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAEAQ---KQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWI 122 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH---HTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHhhh---cccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHH
Confidence 3568999999999999999999888762 335679999998876653 345556544321 23445555555
Q ss_pred HHHHhccC-cEEEEEccccc
Q 002569 256 IFKTLSKK-KFVLLLDDLWE 274 (906)
Q Consensus 256 l~~~l~~k-r~LlVlDdv~~ 274 (906)
..+.++.. --++|+|-|-.
T Consensus 123 ~e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 123 AEQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHHTTSESEEEEE-CTT
T ss_pred HHHHhhcccccEEEEecCcc
Confidence 55555543 45889998854
No 313
>PTZ00301 uridine kinase; Provisional
Probab=95.33 E-value=0.03 Score=55.70 Aligned_cols=25 Identities=36% Similarity=0.663 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4789999999999999999998776
No 314
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.32 E-value=0.88 Score=49.19 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=38.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeC-CcccHHHHHHHHHHHhCCC
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVS-KDLQLEKIQETIGKKIGLY 240 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s-~~~~~~~l~~~i~~~l~~~ 240 (906)
.+.||-.+|.-|.||||.|-.+++.+. . ..+ .+.-|++. ..+..-+-++.+.++.+.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lk-k-~~~-kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLK-K-KGK-KVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHH-H-cCC-ceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 478999999999999999999999883 2 222 22323221 1233445566777777654
No 315
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.31 E-value=0.066 Score=57.81 Aligned_cols=89 Identities=20% Similarity=0.286 Sum_probs=51.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCC-cccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSK-DLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFK 258 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 258 (906)
+..++.++|+.|+||||++..+..... .......+..++... .....+-++...+.++.+... ..+..++...+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~~l~- 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQLALA- 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHHHHH-
Confidence 357999999999999999999988752 111223566665333 223455556666666654321 122222333332
Q ss_pred HhccCcEEEEEcccc
Q 002569 259 TLSKKKFVLLLDDLW 273 (906)
Q Consensus 259 ~l~~kr~LlVlDdv~ 273 (906)
.+.++ -++++|...
T Consensus 212 ~l~~~-DlVLIDTaG 225 (374)
T PRK14722 212 ELRNK-HMVLIDTIG 225 (374)
T ss_pred HhcCC-CEEEEcCCC
Confidence 33444 456699874
No 316
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.29 E-value=0.13 Score=52.46 Aligned_cols=42 Identities=29% Similarity=0.388 Sum_probs=31.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCc
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKD 223 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 223 (906)
+.-.++.|.|.+|.||||+|.++..... ..-..++|++....
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~ 59 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES 59 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC
Confidence 3568999999999999999998765542 23457888876443
No 317
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.25 E-value=0.016 Score=52.98 Aligned_cols=22 Identities=36% Similarity=0.771 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 002569 184 IGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~ 205 (906)
|+|.|..|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998874
No 318
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.24 E-value=0.094 Score=50.59 Aligned_cols=113 Identities=19% Similarity=0.151 Sum_probs=59.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhccc--CCCC---CC--EEEEEEeCCcccHHHHHHHHHHHhCCCCC----ccccCC
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVD--NPTD---FD--SVIWVVVSKDLQLEKIQETIGKKIGLYTD----SWKDRS 248 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~~---f~--~~~wv~~s~~~~~~~l~~~i~~~l~~~~~----~~~~~~ 248 (906)
.-.+++|+|+.|+|||||.+.+..+.-+ +... |. .+.|+ .+ .+.++.+++... .....+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 4579999999999999999998642101 0111 11 12332 11 456666665321 111222
Q ss_pred HHH-HHHHHHHHhccC--cEEEEEccccch---h---hhhhcCCcCC-CCcEEEEEeccccccc
Q 002569 249 LEE-KAQDIFKTLSKK--KFVLLLDDLWER---V---DLKKVGVPLP-KNSAVVFTTRFVDVCG 302 (906)
Q Consensus 249 ~~~-~~~~l~~~l~~k--r~LlVlDdv~~~---~---~~~~~~~~~~-~gs~iivTtR~~~v~~ 302 (906)
..+ ..-.+...+..+ +-++++|+.-.. . .+......+. .|..||++|.+.....
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 222 222344555566 778889987432 1 1112111111 3677888887765543
No 319
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.18 E-value=0.017 Score=45.87 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+|.|.|..|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998884
No 320
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.17 E-value=0.088 Score=54.32 Aligned_cols=91 Identities=20% Similarity=0.186 Sum_probs=58.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHH---HHHHH
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLE---EKAQD 255 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~---~~~~~ 255 (906)
+.-+++=|+|+.|.||||+|.+++-.. ...-..++|++.-..+++..+..--...+..-.- ....+.+ +++..
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v-~~~~~~e~q~~i~~~ 133 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLV-SQPDTGEQQLEIAEK 133 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeE-ecCCCHHHHHHHHHH
Confidence 467899999999999999999987776 3444589999999999887765433321110000 0122222 33444
Q ss_pred HHHHhccCcEEEEEcccc
Q 002569 256 IFKTLSKKKFVLLLDDLW 273 (906)
Q Consensus 256 l~~~l~~kr~LlVlDdv~ 273 (906)
+......+--|+|+|-|-
T Consensus 134 ~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 134 LARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHhccCCCCEEEEecCc
Confidence 444444445688999874
No 321
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.16 E-value=0.069 Score=55.42 Aligned_cols=119 Identities=19% Similarity=0.252 Sum_probs=63.2
Q ss_pred cchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCC
Q 002569 162 VGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYT 241 (906)
Q Consensus 162 vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~ 241 (906)
.|...+..+.+..+... ...+|.|.|..|+||||+++.+.+... ..-..++.+.-...+....+ .++...
T Consensus 62 lg~~~~~~~~l~~~~~~-~~GlilisG~tGSGKTT~l~all~~i~---~~~~~iitiEdp~E~~~~~~-----~q~~v~- 131 (264)
T cd01129 62 LGLKPENLEIFRKLLEK-PHGIILVTGPTGSGKTTTLYSALSELN---TPEKNIITVEDPVEYQIPGI-----NQVQVN- 131 (264)
T ss_pred cCCCHHHHHHHHHHHhc-CCCEEEEECCCCCcHHHHHHHHHhhhC---CCCCeEEEECCCceecCCCc-----eEEEeC-
Confidence 34433333333333333 457899999999999999998877652 11123333322221111100 111111
Q ss_pred CccccCCHHHHHHHHHHHhccCcEEEEEccccchhhhhhcCCcCCCCcEEEEEe
Q 002569 242 DSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWERVDLKKVGVPLPKNSAVVFTT 295 (906)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~gs~iivTt 295 (906)
..........++..++..+=.++++++.+.+...........|-. ++||
T Consensus 132 ----~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~tGh~-v~tT 180 (264)
T cd01129 132 ----EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAALTGHL-VLST 180 (264)
T ss_pred ----CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHHHcCCc-EEEE
Confidence 111123455666777788889999999887655443322223544 4444
No 322
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.16 E-value=0.019 Score=57.62 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+..+|+|.|.+|+|||||++.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999999999999876
No 323
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.15 E-value=0.12 Score=53.96 Aligned_cols=90 Identities=22% Similarity=0.250 Sum_probs=50.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccH--HHHHHHHHHHhCCCCCc-cccCCHHHH-HHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQL--EKIQETIGKKIGLYTDS-WKDRSLEEK-AQD 255 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~--~~l~~~i~~~l~~~~~~-~~~~~~~~~-~~~ 255 (906)
+.++|.++|++|+||||++..++..+. ..-..+..++... +.. .+-+....+..+..... ....+.... ...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~---~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK---KQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 568999999999999999999988772 2224566665442 222 23333344554432110 011223222 233
Q ss_pred HHHHhccCcEEEEEcccc
Q 002569 256 IFKTLSKKKFVLLLDDLW 273 (906)
Q Consensus 256 l~~~l~~kr~LlVlDdv~ 273 (906)
+.....+..=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 433333445578888763
No 324
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.15 E-value=0.056 Score=49.31 Aligned_cols=104 Identities=15% Similarity=0.301 Sum_probs=62.1
Q ss_pred CCCCCCCceEEEeecCCCccccccccCCCCceeEEEccCccccccccc-ccccccccceeecccCcccccCh-hhhCCCC
Q 002569 533 TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPM-GISKLVSLQLLDISKTSVVELPE-ELKALVN 610 (906)
Q Consensus 533 ~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~ 610 (906)
.+.++++|+.+.+.. .+..+....|.++..|+.+.+..+ +..++. .+.++.+|+.+.+.. .+..++. .+..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 356788888888875 577888888888988999988775 666543 466777888888865 5555543 4556888
Q ss_pred CcEecccccccccccChhhhcCCCCCceeeccc
Q 002569 611 LKCLNLDWAKELVVVPQQLLSNFSRLRVLRMFA 643 (906)
Q Consensus 611 L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 643 (906)
|+.+++..+ +..++...+.++ +|+.+.+..
T Consensus 83 l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 888888654 567777767777 888887653
No 325
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.15 E-value=0.11 Score=55.93 Aligned_cols=89 Identities=20% Similarity=0.210 Sum_probs=50.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCc-ccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKD-LQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFK 258 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 258 (906)
..++|+++|++|+||||++..++..+. ... ..+..++.... ....+-++..++.++.+.. ...+...+...+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~--~~G-kkVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH--GKK-KTVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH--HcC-CcEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 457999999999999999999988772 222 24455554322 1222233344444443321 12355555555544
Q ss_pred Hhcc-CcEEEEEcccc
Q 002569 259 TLSK-KKFVLLLDDLW 273 (906)
Q Consensus 259 ~l~~-kr~LlVlDdv~ 273 (906)
.-.. +.=++++|-..
T Consensus 315 lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 315 FKEEARVDYILIDTAG 330 (436)
T ss_pred HHhccCCCEEEEeCcc
Confidence 3221 23477788763
No 326
>PRK08233 hypothetical protein; Provisional
Probab=95.13 E-value=0.019 Score=56.23 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
..+|+|.|.+|+||||+|+.++..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4799999999999999999999876
No 327
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.08 E-value=0.1 Score=53.98 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.+..+|.|.|..|.|||||+..+.+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999999987
No 328
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.06 E-value=0.092 Score=61.91 Aligned_cols=87 Identities=20% Similarity=0.217 Sum_probs=60.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCc---cccCCHHHHHHH
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDS---WKDRSLEEKAQD 255 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~ 255 (906)
+.-+++-|.|.+|+|||||+.+++.... ..-..++|++....++. ..++++++..+. ....+.+.....
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~ 129 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEI 129 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHH
Confidence 3578999999999999999988666542 23467899988877764 367777765432 123344555555
Q ss_pred HHHHhcc-CcEEEEEcccc
Q 002569 256 IFKTLSK-KKFVLLLDDLW 273 (906)
Q Consensus 256 l~~~l~~-kr~LlVlDdv~ 273 (906)
+...++. +.-+||+|-+-
T Consensus 130 i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 130 ADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHHhhcCCCeEEEEcchh
Confidence 5555544 56789999974
No 329
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.05 E-value=0.12 Score=48.41 Aligned_cols=114 Identities=20% Similarity=0.172 Sum_probs=60.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCC---cccHHHHHHHHH--H--HhCCCCCccccCCHHH---
Q 002569 182 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSK---DLQLEKIQETIG--K--KIGLYTDSWKDRSLEE--- 251 (906)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~---~~~~~~l~~~i~--~--~l~~~~~~~~~~~~~~--- 251 (906)
..|-|++..|.||||+|...+-+.. .+--.+.++..-+ ......+++.+- . +.+.. ..+...+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~---~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~-~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL---GHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRG-FFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCC-CccCCCChHHHHH
Confidence 5788999999999999988887762 3333455543322 234444444331 0 00110 0011111111
Q ss_pred ----HHHHHHHHhccCc-EEEEEccccch--------hhhhhcCCcCCCCcEEEEEecccc
Q 002569 252 ----KAQDIFKTLSKKK-FVLLLDDLWER--------VDLKKVGVPLPKNSAVVFTTRFVD 299 (906)
Q Consensus 252 ----~~~~l~~~l~~kr-~LlVlDdv~~~--------~~~~~~~~~~~~gs~iivTtR~~~ 299 (906)
..+..++.+.... =|||||++-.. +++.++...-+.+.-||+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1222333444434 49999998432 233344444455889999999743
No 330
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.091 Score=55.88 Aligned_cols=85 Identities=24% Similarity=0.392 Sum_probs=56.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCcc---ccCCHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KDRSLEEKAQDI 256 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l 256 (906)
.-.+|.|-|.+|||||||.-+++.+.+ ..- .++||+.-+... + .+--+++++...++. .+.+.+++.+.+
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES~~--Q-iklRA~RL~~~~~~l~l~aEt~~e~I~~~l 164 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEESLQ--Q-IKLRADRLGLPTNNLYLLAETNLEDIIAEL 164 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcCHH--H-HHHHHHHhCCCccceEEehhcCHHHHHHHH
Confidence 357999999999999999999999983 222 788887655432 1 122355666544321 234455554444
Q ss_pred HHHhccCcEEEEEccccc
Q 002569 257 FKTLSKKKFVLLLDDLWE 274 (906)
Q Consensus 257 ~~~l~~kr~LlVlDdv~~ 274 (906)
.+ .++-++|+|-+..
T Consensus 165 ~~---~~p~lvVIDSIQT 179 (456)
T COG1066 165 EQ---EKPDLVVIDSIQT 179 (456)
T ss_pred Hh---cCCCEEEEeccce
Confidence 43 5788999998743
No 331
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.03 E-value=0.053 Score=59.36 Aligned_cols=90 Identities=23% Similarity=0.256 Sum_probs=54.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcc-cHHHHHHHHHHHhCCCCC----ccccCCHHH---
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDL-QLEKIQETIGKKIGLYTD----SWKDRSLEE--- 251 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~~--- 251 (906)
.-..++|+|..|+|||||++.++... ..+.+++.-+++.. ...++...++..-++... ...+.+...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 45789999999999999999998654 23566666666553 455566665544222110 001122211
Q ss_pred ---HHHHHHHHh--ccCcEEEEEccccc
Q 002569 252 ---KAQDIFKTL--SKKKFVLLLDDLWE 274 (906)
Q Consensus 252 ---~~~~l~~~l--~~kr~LlVlDdv~~ 274 (906)
.+..+.+++ +++.+|+++||+-.
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 112233333 57999999999854
No 332
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.00 E-value=0.18 Score=48.86 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.-.|++|+|++|+|||||.+.+..-.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 45899999999999999999886654
No 333
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.98 E-value=0.022 Score=57.08 Aligned_cols=26 Identities=38% Similarity=0.537 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
...+|+|+|++|+|||||++.++...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999999999999876
No 334
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.96 E-value=0.16 Score=53.15 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=43.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCC--CCccccCCHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLY--TDSWKDRSLEEKAQDIF 257 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~--~~~~~~~~~~~~~~~l~ 257 (906)
...+|+|.|..|+||||+|+.+.....+.... ..+..++............. .+.. .+-....+.+.+...+.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~-g~V~vi~~D~f~~~~~~l~~----~g~~~~~g~P~s~D~~~l~~~L~ 135 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWPEH-RKVELITTDGFLHPNQVLKE----RNLMKKKGFPESYDMHRLVKFLS 135 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCC-CceEEEecccccccHHHHHH----cCCccccCCChhccHHHHHHHHH
Confidence 57899999999999999999887665211111 13444444333322222222 2211 11123456666666666
Q ss_pred HHhccC
Q 002569 258 KTLSKK 263 (906)
Q Consensus 258 ~~l~~k 263 (906)
....++
T Consensus 136 ~Lk~g~ 141 (290)
T TIGR00554 136 DLKSGK 141 (290)
T ss_pred HHHCCC
Confidence 655554
No 335
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.96 E-value=0.089 Score=49.07 Aligned_cols=26 Identities=42% Similarity=0.662 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.-.+++|+|..|.|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45799999999999999999998875
No 336
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.93 E-value=0.14 Score=49.82 Aligned_cols=26 Identities=35% Similarity=0.555 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.-.+++|.|..|.|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45789999999999999999998875
No 337
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.93 E-value=0.057 Score=50.06 Aligned_cols=42 Identities=31% Similarity=0.324 Sum_probs=32.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHH
Q 002569 184 IGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQE 231 (906)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~ 231 (906)
|.++|++|+|||+||+.+++.. -....-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~------~~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL------GRPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH------TCEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh------hcceEEEEecccccccccee
Confidence 6799999999999999999987 12345567888777777764
No 338
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.92 E-value=0.036 Score=61.80 Aligned_cols=100 Identities=23% Similarity=0.218 Sum_probs=54.6
Q ss_pred HHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEE-EEEEeCCcc-cHHHHHHHHHHHhCCCCCccccC
Q 002569 170 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSV-IWVVVSKDL-QLEKIQETIGKKIGLYTDSWKDR 247 (906)
Q Consensus 170 ~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~-~wv~~s~~~-~~~~l~~~i~~~l~~~~~~~~~~ 247 (906)
++++++..=+.-.-..|+|++|+|||||++.+.+... ..+-++. +++-|.+.. .+.++.+.+-..+-... .+.
T Consensus 405 RvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT---~D~ 479 (672)
T PRK12678 405 RVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIAST---FDR 479 (672)
T ss_pred eeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEEC---CCC
Confidence 4455554423556789999999999999999998762 2233433 344455543 23333333311110000 111
Q ss_pred CH------HHHHHHHHHHh--ccCcEEEEEccccc
Q 002569 248 SL------EEKAQDIFKTL--SKKKFVLLLDDLWE 274 (906)
Q Consensus 248 ~~------~~~~~~l~~~l--~~kr~LlVlDdv~~ 274 (906)
+. ..++-.+.+++ .++.+||++|++-.
T Consensus 480 p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 480 PPSDHTTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 11 12222233333 57899999999843
No 339
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.91 E-value=0.044 Score=55.84 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=25.8
Q ss_pred cCCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 177 QEPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 177 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
..+...+|+|.|+.|.|||||++.+....
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 33468899999999999999999999887
No 340
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.91 E-value=0.12 Score=52.31 Aligned_cols=121 Identities=18% Similarity=0.236 Sum_probs=69.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCC----------CC---CEEEEEEeCCcc------cH--------------
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPT----------DF---DSVIWVVVSKDL------QL-------------- 226 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------~f---~~~~wv~~s~~~------~~-------------- 226 (906)
.-.+++|+|+.|.|||||.+.+..-....++ .+ ..+.||.=...+ ++
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 3489999999999999999999884421100 01 246665411100 11
Q ss_pred --------HHHHHHHHHHhCCCC---CccccCCHHHHHH-HHHHHhccCcEEEEEccccch------hhhhhcCCcCCC-
Q 002569 227 --------EKIQETIGKKIGLYT---DSWKDRSLEEKAQ-DIFKTLSKKKFVLLLDDLWER------VDLKKVGVPLPK- 287 (906)
Q Consensus 227 --------~~l~~~i~~~l~~~~---~~~~~~~~~~~~~-~l~~~l~~kr~LlVlDdv~~~------~~~~~~~~~~~~- 287 (906)
.+...+.+++.++.. .....-+-.+.++ .+.+.|..++=|++||.--.. ..+-.+...+..
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e 188 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE 188 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 244455556655432 1122334444443 456678899999999985432 222233222222
Q ss_pred CcEEEEEeccccc
Q 002569 288 NSAVVFTTRFVDV 300 (906)
Q Consensus 288 gs~iivTtR~~~v 300 (906)
|..|+++|-+-..
T Consensus 189 g~tIl~vtHDL~~ 201 (254)
T COG1121 189 GKTVLMVTHDLGL 201 (254)
T ss_pred CCEEEEEeCCcHH
Confidence 8889988876544
No 341
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.87 E-value=0.17 Score=48.52 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.-.+++|+|..|.|||||++.+....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999998876
No 342
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.86 E-value=1.4 Score=46.48 Aligned_cols=165 Identities=15% Similarity=0.080 Sum_probs=89.6
Q ss_pred HHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhccc-------CCCCCCEEEEEEe-CCcccHHHHHHHHHHHhCC
Q 002569 168 LEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVD-------NPTDFDSVIWVVV-SKDLQLEKIQETIGKKIGL 239 (906)
Q Consensus 168 ~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------~~~~f~~~~wv~~-s~~~~~~~l~~~i~~~l~~ 239 (906)
++.+.+.+..+.-.++..++|..|.||+++|+.+.+..-- ...+-+.+.++.. +......++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 3445555555534577789999999999999999887510 0112222333321 1112222222 22222211
Q ss_pred CCCccccCCHHHHHHHHHHHhccCcEEEEEccccchh--h---hhhcCCcCCCCcEEEEEec-ccccccC-CCccceEEe
Q 002569 240 YTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWERV--D---LKKVGVPLPKNSAVVFTTR-FVDVCGG-MEARRKFKV 312 (906)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--~---~~~~~~~~~~gs~iivTtR-~~~v~~~-~~~~~~~~l 312 (906)
.. .-.+.+-++|+|++.... . +.+...-.|.++.+|++|. ...+... .+....+++
T Consensus 84 ~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f 146 (299)
T PRK07132 84 SS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNV 146 (299)
T ss_pred CC-----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEEC
Confidence 10 001467788999986542 1 2223333344677666554 3333322 234678999
Q ss_pred ccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHH
Q 002569 313 ECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALIT 359 (906)
Q Consensus 313 ~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~ 359 (906)
.++++++..+.+... + .. ++.+..++...+|.=-|+..
T Consensus 147 ~~l~~~~l~~~l~~~-~-~~-------~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 147 KEPDQQKILAKLLSK-N-KE-------KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCHHHHHHHHHHc-C-CC-------hhHHHHHHHHcCCHHHHHHH
Confidence 999999998887654 2 11 34566667777763244443
No 343
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.86 E-value=0.12 Score=52.02 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+|+|.|..|+||||+|+.+...+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 344
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.84 E-value=0.025 Score=52.76 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998876
No 345
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.80 E-value=0.052 Score=63.12 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=57.8
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG 238 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 238 (906)
.+++|.++.++.+...+... +.+.++|.+|+||||+|+.+.+... ..+++..+|..-+ ..+...+++.+..++|
T Consensus 31 ~~vigq~~a~~~L~~~~~~~---~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~np-~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR---RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPNP-EDPNNPKIRTVPAGKG 104 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC---CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeCC-CcchHHHHHHHHHhcC
Confidence 35889988888887777655 4799999999999999999998872 3456788887663 3467777888877665
Q ss_pred C
Q 002569 239 L 239 (906)
Q Consensus 239 ~ 239 (906)
.
T Consensus 105 ~ 105 (637)
T PRK13765 105 K 105 (637)
T ss_pred H
Confidence 3
No 346
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.80 E-value=0.18 Score=49.07 Aligned_cols=119 Identities=19% Similarity=0.145 Sum_probs=65.3
Q ss_pred HHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCC--EEEEEEeCCcc---cHHHHHHHHHHHhCCCCCccc
Q 002569 171 VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD--SVIWVVVSKDL---QLEKIQETIGKKIGLYTDSWK 245 (906)
Q Consensus 171 l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~s~~~---~~~~l~~~i~~~l~~~~~~~~ 245 (906)
++..+... ...-..|.|++|+|||||.+.++.-.......|- .+.-|+-+... ...--+..+..+..... .
T Consensus 128 li~~ly~~-g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld---~ 203 (308)
T COG3854 128 LIKDLYQN-GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLD---P 203 (308)
T ss_pred HHHHHHhc-CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcc---c
Confidence 44445444 4455789999999999999999888743334554 23333322110 00000011111111100 0
Q ss_pred cCCHHHHHHHHHHHhccCcEEEEEccccchhhhhhcCCcCCCCcEEEEEec
Q 002569 246 DRSLEEKAQDIFKTLSKKKFVLLLDDLWERVDLKKVGVPLPKNSAVVFTTR 296 (906)
Q Consensus 246 ~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~~~~~~gs~iivTtR 296 (906)
....+.+...++.. .+=++|+|.+....+...+..++..|.++|.|.-
T Consensus 204 cpk~~gmmmaIrsm---~PEViIvDEIGt~~d~~A~~ta~~~GVkli~TaH 251 (308)
T COG3854 204 CPKAEGMMMAIRSM---SPEVIIVDEIGTEEDALAILTALHAGVKLITTAH 251 (308)
T ss_pred chHHHHHHHHHHhc---CCcEEEEeccccHHHHHHHHHHHhcCcEEEEeec
Confidence 01122223333322 4678999999988777777677777999988874
No 347
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.78 E-value=0.018 Score=54.78 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 182 GIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+.|.+.|.+|+||||+|++++..+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 568899999999999999999887
No 348
>PRK05439 pantothenate kinase; Provisional
Probab=94.76 E-value=0.23 Score=52.32 Aligned_cols=81 Identities=20% Similarity=0.140 Sum_probs=44.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHH--HHHHHhCCCCCccccCCHHHHHHHH
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQE--TIGKKIGLYTDSWKDRSLEEKAQDI 256 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~--~i~~~l~~~~~~~~~~~~~~~~~~l 256 (906)
+..-+|+|.|.+|+||||+|+.+..... .......+.-++...-+-....+. .++..-+. ...-+.+.+.+.+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~-~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~----Pes~D~~~l~~~L 158 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS-RWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGF----PESYDMRALLRFL 158 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-hhCCCCceEEEeccccccCHHHHhhhhccccCCC----cccccHHHHHHHH
Confidence 3678999999999999999999988662 111112344444444332222221 11111111 1334556666666
Q ss_pred HHHhccCc
Q 002569 257 FKTLSKKK 264 (906)
Q Consensus 257 ~~~l~~kr 264 (906)
.....++.
T Consensus 159 ~~Lk~G~~ 166 (311)
T PRK05439 159 SDVKSGKP 166 (311)
T ss_pred HHHHcCCC
Confidence 66555554
No 349
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.75 E-value=0.14 Score=49.81 Aligned_cols=116 Identities=21% Similarity=0.298 Sum_probs=63.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEE---eCCcccHHHHH------HHHHHHhCCCCC---ccccC
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVV---VSKDLQLEKIQ------ETIGKKIGLYTD---SWKDR 247 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---~s~~~~~~~l~------~~i~~~l~~~~~---~~~~~ 247 (906)
.-.+++|+|..|.|||||++.++... ......+++. +.. .+..... .++++.+++... .....
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 45799999999999999999998875 2233344442 221 1121211 124555554321 11122
Q ss_pred CHH-HHHHHHHHHhccCcEEEEEccccch------hhhhhcCCcC-CC-CcEEEEEeccccc
Q 002569 248 SLE-EKAQDIFKTLSKKKFVLLLDDLWER------VDLKKVGVPL-PK-NSAVVFTTRFVDV 300 (906)
Q Consensus 248 ~~~-~~~~~l~~~l~~kr~LlVlDdv~~~------~~~~~~~~~~-~~-gs~iivTtR~~~v 300 (906)
+.. ...-.+.+.+...+-++++|+.-.. ..+..+...+ .. +..||++|.+...
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 222 2233455566778889999997432 1122221222 12 5678888876444
No 350
>PRK05973 replicative DNA helicase; Provisional
Probab=94.73 E-value=0.19 Score=50.68 Aligned_cols=49 Identities=12% Similarity=0.174 Sum_probs=35.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETI 233 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i 233 (906)
.-.++.|.|.+|+|||+++.++..... ..-..++|++...+ ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a---~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM---KSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEEeCC--HHHHHHHH
Confidence 458999999999999999999877652 23456777766554 44555544
No 351
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.72 E-value=0.11 Score=56.58 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 352
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.72 E-value=0.1 Score=58.60 Aligned_cols=84 Identities=23% Similarity=0.389 Sum_probs=50.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCcc---ccCCHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KDRSLEEKAQDI 256 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l 256 (906)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++.... ...+... +++++...+.. ...+.+++.+.+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 457999999999999999999988773 22346788876543 3333222 45555432211 122333333333
Q ss_pred HHHhccCcEEEEEccc
Q 002569 257 FKTLSKKKFVLLLDDL 272 (906)
Q Consensus 257 ~~~l~~kr~LlVlDdv 272 (906)
. +.+.-++|+|.+
T Consensus 153 ~---~~~~~lVVIDSI 165 (446)
T PRK11823 153 E---EEKPDLVVIDSI 165 (446)
T ss_pred H---hhCCCEEEEech
Confidence 2 124557777776
No 353
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.72 E-value=0.16 Score=52.75 Aligned_cols=41 Identities=24% Similarity=0.441 Sum_probs=32.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCC
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSK 222 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 222 (906)
+.-.++.|.|.+|+|||++|.+++.... ..-..++|++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 3568999999999999999999866542 2345788888764
No 354
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.71 E-value=0.031 Score=49.63 Aligned_cols=40 Identities=33% Similarity=0.468 Sum_probs=22.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHH
Q 002569 184 IGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKI 229 (906)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l 229 (906)
|.++|.+|+||||+|+.++... ...|.. |....+..+.++
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R---Iq~tpdllPsDi 41 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR---IQFTPDLLPSDI 41 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE---EE--TT--HHHH
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE---EEecCCCCcccc
Confidence 6799999999999999999987 456643 333333344444
No 355
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.70 E-value=0.06 Score=48.79 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcC-CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 167 QLEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 167 ~~~~l~~~L~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+.+++-+.+... +...+|.+.|.-|.||||+++.++..+
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344444444331 245799999999999999999999987
No 356
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.70 E-value=0.083 Score=57.26 Aligned_cols=47 Identities=21% Similarity=0.247 Sum_probs=37.1
Q ss_pred CcccchhHHHHHHHHHHhcC-------------CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 159 PTVVGLQSQLEQVWRCLVQE-------------PAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
..++|.++.++.+.-.+... -..+.|.++|++|+|||++|+.+....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789888888876555421 124789999999999999999999987
No 357
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.68 E-value=0.045 Score=50.58 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=28.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCC
Q 002569 182 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSK 222 (906)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 222 (906)
++|.|+|..|+|||||++.+.+.+. +..+...++.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 5899999999999999999999983 34555555665544
No 358
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.67 E-value=0.39 Score=55.31 Aligned_cols=129 Identities=19% Similarity=0.187 Sum_probs=75.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKT 259 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 259 (906)
..+.+.++|++|.|||.||+++++.. ...|-.+.. . ++ ... +-..+...+...+...
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~-----~----~l----~sk-------~vGesek~ir~~F~~A 331 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKG-----S----EL----LSK-------WVGESEKNIRELFEKA 331 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeC-----H----HH----hcc-------ccchHHHHHHHHHHHH
Confidence 46689999999999999999999965 234422221 1 11 110 1122333344444444
Q ss_pred hccCcEEEEEccccchhh-------------hhhcCCc---CCC--CcEEEEEecccccccCC-----CccceEEeccCC
Q 002569 260 LSKKKFVLLLDDLWERVD-------------LKKVGVP---LPK--NSAVVFTTRFVDVCGGM-----EARRKFKVECLS 316 (906)
Q Consensus 260 l~~kr~LlVlDdv~~~~~-------------~~~~~~~---~~~--gs~iivTtR~~~v~~~~-----~~~~~~~l~~L~ 316 (906)
.+..+..|.+|++..... ...+... ... +..||-||......... .-...+.+..-+
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd 411 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPD 411 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCC
Confidence 567889999999854211 1111111 122 43455555544433211 124577888899
Q ss_pred hHhHHHHHHHHhccc
Q 002569 317 DEDAWELFREKVGEE 331 (906)
Q Consensus 317 ~~e~~~Lf~~~a~~~ 331 (906)
.++..+.|..+....
T Consensus 412 ~~~r~~i~~~~~~~~ 426 (494)
T COG0464 412 LEERLEIFKIHLRDK 426 (494)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999988643
No 359
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.67 E-value=0.03 Score=55.15 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+.++|.|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999999999998765
No 360
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.67 E-value=0.13 Score=56.52 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
...+|.++|..|+||||++..++..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999988766
No 361
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.66 E-value=0.038 Score=51.51 Aligned_cols=36 Identities=28% Similarity=0.318 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEE
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVV 219 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 219 (906)
..+|-+.|.+|+||||||+++...+. ..-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~---~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLF---ARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHH---HTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEec
Confidence 46899999999999999999999982 3345566664
No 362
>PRK06762 hypothetical protein; Provisional
Probab=94.66 E-value=0.03 Score=53.85 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
..+|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 363
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.58 E-value=0.09 Score=57.01 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=38.2
Q ss_pred CcccchhHHHHHHHHHHhc---------C----CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 159 PTVVGLQSQLEQVWRCLVQ---------E----PAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~---------~----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
..++|.++.++.+..++.. . -..+.|.++|+.|+|||++|+.+....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999998888877743 0 124789999999999999999999886
No 364
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.58 E-value=0.2 Score=50.95 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=35.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG 238 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 238 (906)
...++.|.|..|+||||+|.+++....+ .. ..++|++... +..++.+.+ .+++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~--~g-~~~~yi~~e~--~~~~~~~~~-~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ--NG-YSVSYVSTQL--TTTEFIKQM-MSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--CC-CcEEEEeCCC--CHHHHHHHH-HHhC
Confidence 4579999999999999998666554411 22 4567776433 455666665 3444
No 365
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.57 E-value=0.14 Score=50.63 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=29.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCC-------CCCEEEEEEeCCc
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPT-------DFDSVIWVVVSKD 223 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------~f~~~~wv~~s~~ 223 (906)
-.++.|.|++|+||||++..+......... .-..++|+.....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 468999999999999999999887742111 1237888877665
No 366
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.57 E-value=0.06 Score=51.94 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.|.|.|.+|.||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 367
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.56 E-value=0.18 Score=55.05 Aligned_cols=90 Identities=20% Similarity=0.268 Sum_probs=53.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCC-CCCCEEEEEEeCCc-ccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNP-TDFDSVIWVVVSKD-LQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIF 257 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 257 (906)
..++|.++|+.|+||||.+..++..+.... .+-..+..+++... .....-++..++.++.+.. ...+..++...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 457999999999999999999888762111 12235555555432 1223335555666665421 2234444444444
Q ss_pred HHhccCcEEEEEcccc
Q 002569 258 KTLSKKKFVLLLDDLW 273 (906)
Q Consensus 258 ~~l~~kr~LlVlDdv~ 273 (906)
+. .+.-++++|.+.
T Consensus 251 ~~--~~~DlVLIDTaG 264 (388)
T PRK12723 251 QS--KDFDLVLVDTIG 264 (388)
T ss_pred Hh--CCCCEEEEcCCC
Confidence 33 345688899874
No 368
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.56 E-value=0.033 Score=56.18 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.|.|+|++|+||||+|+.++...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998876
No 369
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.53 E-value=0.064 Score=52.56 Aligned_cols=43 Identities=30% Similarity=0.404 Sum_probs=30.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHH
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLE 227 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 227 (906)
.|+|+|-||+||||+|..+...+. ..+-..+.-|+...++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~--~~~~~~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLL--SKGGYNVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHH--hcCCceEEEEeCCCCCChH
Confidence 689999999999999999666652 2232346667766665543
No 370
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.16 Score=60.42 Aligned_cols=102 Identities=17% Similarity=0.293 Sum_probs=67.7
Q ss_pred cccchhHHHHHHHHHHhcC-------CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHH
Q 002569 160 TVVGLQSQLEQVWRCLVQE-------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQET 232 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~ 232 (906)
.++|.++.+..|.+.+... .......+.|+.|+|||-||++++..+ .+..+..+-++.|....
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~~e------- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEFQE------- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhhhh-------
Confidence 4678888888888887541 146788999999999999999999987 45666666666554322
Q ss_pred HHHHhCCCCCccccCCHHHHHHHHHHHhccCcE-EEEEccccch
Q 002569 233 IGKKIGLYTDSWKDRSLEEKAQDIFKTLSKKKF-VLLLDDLWER 275 (906)
Q Consensus 233 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~ 275 (906)
+.+.++.+. .+.. .+....|.+.+++++| +|+||||...
T Consensus 633 vskligsp~-gyvG---~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 VSKLIGSPP-GYVG---KEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hhhccCCCc-cccc---chhHHHHHHHHhcCCceEEEEechhhc
Confidence 333323221 1111 2223367778888886 6778999754
No 371
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.52 E-value=0.059 Score=54.82 Aligned_cols=89 Identities=24% Similarity=0.291 Sum_probs=55.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCC-CCEEEEEEeCCcccHHHHHHHHHHHhCCCCC-------------cc
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD-FDSVIWVVVSKDLQLEKIQETIGKKIGLYTD-------------SW 244 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~-------------~~ 244 (906)
+.-.++.|.|.+|+|||+++.++..... .. -+.++|++...+. .++.+.+. .++.... ..
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~---~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~ 90 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGL---KNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFP 90 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH---HHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhh---hhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccc
Confidence 4678999999999999999988665441 23 4578888876653 44444433 3332110 00
Q ss_pred c-----cCCHHHHHHHHHHHhcc-CcEEEEEcccc
Q 002569 245 K-----DRSLEEKAQDIFKTLSK-KKFVLLLDDLW 273 (906)
Q Consensus 245 ~-----~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 273 (906)
. ..+...+...+.+.++. +...+|+|.+.
T Consensus 91 ~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 91 ERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp GGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 1 34677777777777664 45788999863
No 372
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.51 E-value=0.23 Score=47.04 Aligned_cols=121 Identities=21% Similarity=0.215 Sum_probs=68.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEe---C------------------Cc---------------
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVV---S------------------KD--------------- 223 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---s------------------~~--------------- 223 (906)
.-.++.++|++|.||||+.+.+|... + .-...+|+.- + ++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e-~---pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE-R---PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh-c---CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 56899999999999999999999987 2 2223444321 0 11
Q ss_pred ------ccHHHHH---HHHHHHhCCCCCc----cccCCHHHHHHHHHHHhccCcEEEEEccc----cchhhhhhc--CCc
Q 002569 224 ------LQLEKIQ---ETIGKKIGLYTDS----WKDRSLEEKAQDIFKTLSKKKFVLLLDDL----WERVDLKKV--GVP 284 (906)
Q Consensus 224 ------~~~~~l~---~~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~kr~LlVlDdv----~~~~~~~~~--~~~ 284 (906)
....++. .+.++..++.... ..-+.-++..-.+.+.+-+++-+++-|.- +-+..|+-+ ...
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfee 182 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE 182 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence 1122222 2333333432210 01122333344566677788999998874 222233322 222
Q ss_pred CCC-CcEEEEEecccccccCC
Q 002569 285 LPK-NSAVVFTTRFVDVCGGM 304 (906)
Q Consensus 285 ~~~-gs~iivTtR~~~v~~~~ 304 (906)
+.. |..|+++|-+..+...+
T Consensus 183 inr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 183 INRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HhhcCcEEEEEeccHHHHHhc
Confidence 222 99999999988776554
No 373
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.49 E-value=0.22 Score=53.46 Aligned_cols=89 Identities=19% Similarity=0.142 Sum_probs=54.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcc-cHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDL-QLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFK 258 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 258 (906)
..+++.++|+.|+||||++..++.... ..-..+.+++..... ...+-++..++.++.+.. ...+..++...+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~---~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL---KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 468999999999999999999887662 222456667654322 234445555555554321 23455565554443
Q ss_pred Hhc-cCcEEEEEcccc
Q 002569 259 TLS-KKKFVLLLDDLW 273 (906)
Q Consensus 259 ~l~-~kr~LlVlDdv~ 273 (906)
.-. +..=+|++|-..
T Consensus 280 l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 280 MTYVNCVDHILIDTVG 295 (407)
T ss_pred HHhcCCCCEEEEECCC
Confidence 321 344577888764
No 374
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.48 E-value=0.14 Score=52.41 Aligned_cols=95 Identities=13% Similarity=0.137 Sum_probs=58.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhccc-CCCCCCEEEEEEeCCcc-cHHHHHHHHHHHhCCCCC----ccccCCHH---
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVD-NPTDFDSVIWVVVSKDL-QLEKIQETIGKKIGLYTD----SWKDRSLE--- 250 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~--- 250 (906)
+-..++|.|..|+|||+|+..+.+.... .+.+-+.++++-+++.. +..++..++.+.-.+... ...+.+.-
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 4567899999999999999998877510 11235678888887754 566777766654222110 00111111
Q ss_pred ---HHHHHHHHHh---ccCcEEEEEccccc
Q 002569 251 ---EKAQDIFKTL---SKKKFVLLLDDLWE 274 (906)
Q Consensus 251 ---~~~~~l~~~l---~~kr~LlVlDdv~~ 274 (906)
..+-.+.+++ .++++|+++||+-.
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 1122334444 36899999999854
No 375
>PRK03839 putative kinase; Provisional
Probab=94.47 E-value=0.032 Score=54.49 Aligned_cols=23 Identities=43% Similarity=0.658 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.|.|.|++|+||||+++.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 376
>PRK05922 type III secretion system ATPase; Validated
Probab=94.47 E-value=0.11 Score=57.25 Aligned_cols=90 Identities=14% Similarity=0.217 Sum_probs=50.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCC-cccHHHHHHHHHHHhCCCCCc----cccCCHH----
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSK-DLQLEKIQETIGKKIGLYTDS----WKDRSLE---- 250 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~~~----~~~~~~~---- 250 (906)
.-..++|+|..|+|||||++.+.... ..+...++.++. .....+.+.+..........- ..+.+..
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 45679999999999999999998764 223334433333 233445555544433221100 0111111
Q ss_pred --HHHHHHHHHh--ccCcEEEEEccccc
Q 002569 251 --EKAQDIFKTL--SKKKFVLLLDDLWE 274 (906)
Q Consensus 251 --~~~~~l~~~l--~~kr~LlVlDdv~~ 274 (906)
..+..+.+++ +++++|+++||+-.
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1122333443 47999999999954
No 377
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.46 E-value=0.2 Score=48.30 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45799999999999999999998876
No 378
>PRK06217 hypothetical protein; Validated
Probab=94.41 E-value=0.065 Score=52.41 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 182 GIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
..|.|.|.+|+||||+|+.+....
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999887
No 379
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.41 E-value=0.12 Score=50.67 Aligned_cols=45 Identities=24% Similarity=0.221 Sum_probs=31.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHH
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQET 232 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~ 232 (906)
++.|.|++|+|||++|.++..... ..-..++|++.... ..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCCC--HHHHHHH
Confidence 367999999999999999877652 23356788876543 4444443
No 380
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.40 E-value=0.085 Score=46.78 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=36.0
Q ss_pred cccchhHHHHHHHHHHhc------CCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 160 TVVGLQSQLEQVWRCLVQ------EPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.++|.+-..+.+++.+.+ ..+.=|++.+|..|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 467777777777666643 2467799999999999999999988874
No 381
>PRK14527 adenylate kinase; Provisional
Probab=94.37 E-value=0.066 Score=52.80 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
...+|.|+|++|+||||+|+.+++..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998876
No 382
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.37 E-value=0.12 Score=57.31 Aligned_cols=101 Identities=19% Similarity=0.255 Sum_probs=61.8
Q ss_pred HHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcc-cHHHHHHHHHHHhCCCCC----cccc
Q 002569 172 WRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDL-QLEKIQETIGKKIGLYTD----SWKD 246 (906)
Q Consensus 172 ~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~----~~~~ 246 (906)
++.+..=.+-..++|+|.+|+|||||+..+..... +.+-+.++++-+++.. ...++..++...-.+... ...+
T Consensus 134 ID~l~pigkGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd 211 (461)
T PRK12597 134 IDLLCPIAKGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMN 211 (461)
T ss_pred ecccCccccCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCC
Confidence 33443323557899999999999999999888873 2356778888776643 456666666553222110 0012
Q ss_pred CCHH------HHHHHHHHHh---ccCcEEEEEccccc
Q 002569 247 RSLE------EKAQDIFKTL---SKKKFVLLLDDLWE 274 (906)
Q Consensus 247 ~~~~------~~~~~l~~~l---~~kr~LlVlDdv~~ 274 (906)
.+.. ..+..+.+++ +++.+|+++|++-.
T Consensus 212 ~~~~~R~~a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 212 EPPGARMRVVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 2222 1223344444 37899999999943
No 383
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.27 Score=56.36 Aligned_cols=92 Identities=21% Similarity=0.235 Sum_probs=61.8
Q ss_pred cccchhHHHHHHHHHHhc----------C-CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHH
Q 002569 160 TVVGLQSQLEQVWRCLVQ----------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEK 228 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~----------~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 228 (906)
++=|.++.+.+|.+-+.- + .+..-|..+|++|.|||-+|++|+-+.. .-|+.|..+ +
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs--------L~FlSVKGP----E 740 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS--------LNFLSVKGP----E 740 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce--------eeEEeecCH----H
Confidence 466788888888877642 1 2356789999999999999999998871 345555543 1
Q ss_pred HHHHHHHHhCCCCCccccCCHHHHHHHHHHHhccCcEEEEEccccc
Q 002569 229 IQETIGKKIGLYTDSWKDRSLEEKAQDIFKTLSKKKFVLLLDDLWE 274 (906)
Q Consensus 229 l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 274 (906)
++..- ...+++...+.+.+.-..++++|.+|.+++
T Consensus 741 LLNMY-----------VGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 741 LLNMY-----------VGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHH-----------hcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 11111 112444455555555567899999999865
No 384
>PRK14974 cell division protein FtsY; Provisional
Probab=94.36 E-value=0.18 Score=53.83 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=49.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcc--cHHHHHHHHHHHhCCCCCc-cccCCHHHHH-HH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDL--QLEKIQETIGKKIGLYTDS-WKDRSLEEKA-QD 255 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~l~~~i~~~l~~~~~~-~~~~~~~~~~-~~ 255 (906)
+..+|.++|+.|+||||++..++..+. ...+ .++.+... .+ ...+-++..+..++.+... ....+....+ ..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~--~~g~-~V~li~~D-t~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK--KNGF-SVVIAAGD-TFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCC-eEEEecCC-cCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 468999999999999999988887762 2233 34444432 22 2333455566666653211 1122333322 22
Q ss_pred HHHHhccCcEEEEEcccc
Q 002569 256 IFKTLSKKKFVLLLDDLW 273 (906)
Q Consensus 256 l~~~l~~kr~LlVlDdv~ 273 (906)
+...-....=++++|-..
T Consensus 215 i~~~~~~~~DvVLIDTaG 232 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAG 232 (336)
T ss_pred HHHHHhCCCCEEEEECCC
Confidence 222222223388899874
No 385
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.35 E-value=0.073 Score=57.75 Aligned_cols=108 Identities=14% Similarity=0.139 Sum_probs=59.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKT 259 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 259 (906)
....|.|.|+.|+||||+++.+.+.. .......++. +.++... ..... ..+-... . ...+.......++..
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~-e-vg~~~~~~~~~l~~~ 191 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIEY--VHRNK-RSLINQR-E-VGLDTLSFANALRAA 191 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChhh--hccCc-cceEEcc-c-cCCCCcCHHHHHHHh
Confidence 35889999999999999999988866 2333334443 2222111 10000 0000000 0 011112345556777
Q ss_pred hccCcEEEEEccccchhhhhhcCCcCCCCcEEEEEec
Q 002569 260 LSKKKFVLLLDDLWERVDLKKVGVPLPKNSAVVFTTR 296 (906)
Q Consensus 260 l~~kr~LlVlDdv~~~~~~~~~~~~~~~gs~iivTtR 296 (906)
++..+=.|++|.+.+.+.+.........|..|+.|.-
T Consensus 192 lr~~pd~i~vgEird~~~~~~~l~aa~tGh~v~~T~H 228 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVELALTAAETGHLVFGTLH 228 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 8888999999999877655443222223655555543
No 386
>PRK04040 adenylate kinase; Provisional
Probab=94.34 E-value=0.039 Score=54.02 Aligned_cols=47 Identities=30% Similarity=0.498 Sum_probs=32.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCC
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGL 239 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~ 239 (906)
..+|+|+|++|+||||+++.+..... ..+.. + +..++..+++...+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~---~~~~~---~------~~g~~~~~~a~~~g~ 48 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK---EDYKI---V------NFGDVMLEVAKEEGL 48 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc---cCCeE---E------ecchHHHHHHHHcCC
Confidence 36899999999999999999998871 12322 2 224456666666554
No 387
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.33 E-value=0.18 Score=55.59 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=53.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcc-cHHHHHHHHHHHhCCCCC----ccccCCHHH---
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDL-QLEKIQETIGKKIGLYTD----SWKDRSLEE--- 251 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~~--- 251 (906)
+-..++|+|..|+|||||++.+++.. ..+.++++-+++.. .+.++..+.+..-++... ...+.+...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 56789999999999999999998765 22455666665543 444555555443222110 001222111
Q ss_pred ---HHHHHHHHh--ccCcEEEEEccccc
Q 002569 252 ---KAQDIFKTL--SKKKFVLLLDDLWE 274 (906)
Q Consensus 252 ---~~~~l~~~l--~~kr~LlVlDdv~~ 274 (906)
.+..+.+++ +++.+|+++||+-.
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 122233333 47899999999843
No 388
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.32 E-value=0.031 Score=49.08 Aligned_cols=22 Identities=36% Similarity=0.714 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 002569 184 IGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~ 205 (906)
|-|+|.+|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988877
No 389
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.28 E-value=0.096 Score=50.58 Aligned_cols=26 Identities=31% Similarity=0.594 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45799999999999999999998865
No 390
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=6.3 Score=39.15 Aligned_cols=46 Identities=26% Similarity=0.333 Sum_probs=34.2
Q ss_pred cccchhHHHHHHHHHHhc------------CCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 160 TVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
++-|.+-.+.++.+...- -+..+-|..+|++|.|||.||++|++.-
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 345666666666655421 0357888999999999999999999986
No 391
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.26 E-value=0.11 Score=57.20 Aligned_cols=91 Identities=22% Similarity=0.183 Sum_probs=49.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCC---ccccCCHH------
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTD---SWKDRSLE------ 250 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~---~~~~~~~~------ 250 (906)
.-..++|+|..|+|||||++.+.... .....+++...-+..++.++....+.......- ...+.+..
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 45789999999999999999887654 122344444333344455444433332210000 00111111
Q ss_pred HHHHHHHHHh--ccCcEEEEEccccc
Q 002569 251 EKAQDIFKTL--SKKKFVLLLDDLWE 274 (906)
Q Consensus 251 ~~~~~l~~~l--~~kr~LlVlDdv~~ 274 (906)
..+-.+.+++ +++.+|+++||+-.
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchHH
Confidence 1112223333 47899999999854
No 392
>PRK08149 ATP synthase SpaL; Validated
Probab=94.26 E-value=0.17 Score=55.56 Aligned_cols=90 Identities=17% Similarity=0.234 Sum_probs=52.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCc-ccHHHHHHHHHHHhCCCCCc----cccCCHH----
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKD-LQLEKIQETIGKKIGLYTDS----WKDRSLE---- 250 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~----~~~~~~~---- 250 (906)
+-..++|+|..|+|||||++.++... .-+.+++..+... .+..++..+.........-. ..+.+..
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 55789999999999999999988754 2234444444433 34556666666543221100 0111111
Q ss_pred --HHHHHHHHHh--ccCcEEEEEccccc
Q 002569 251 --EKAQDIFKTL--SKKKFVLLLDDLWE 274 (906)
Q Consensus 251 --~~~~~l~~~l--~~kr~LlVlDdv~~ 274 (906)
..+..+.+++ +++++|+++||+-.
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 1222233333 47999999999854
No 393
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.25 E-value=0.04 Score=53.25 Aligned_cols=49 Identities=29% Similarity=0.426 Sum_probs=33.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHH
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGK 235 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~ 235 (906)
..+|+|-||=|+||||||+.+.+.. . |. +.+=.+.+++-+.....++-+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l-~----~~-~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL-G----FK-VFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh-C----Cc-eeeecccCChHHHHHHHhHHH
Confidence 5799999999999999999999998 2 32 233334455444455444433
No 394
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.23 E-value=0.14 Score=57.47 Aligned_cols=51 Identities=25% Similarity=0.329 Sum_probs=35.3
Q ss_pred HHHHHHhcC-CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCc
Q 002569 170 QVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKD 223 (906)
Q Consensus 170 ~l~~~L~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 223 (906)
.+-+.|..+ ..-.++.|.|.+|+|||||+.++..... ..-..++|++....
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a---~~g~kvlYvs~EEs 133 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA---KNQMKVLYVSGEES 133 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEECcCC
Confidence 333344332 3568999999999999999999987763 22235788876543
No 395
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.23 E-value=0.12 Score=60.21 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=51.3
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG 238 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 238 (906)
.+++|.++.++.+...+... +.+.++|+.|+||||+|+.+.+... ...|...+++.-+. .+...+++.++.+++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~---~~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~n~~-~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK---RNVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYPNPE-DPNMPRIVEVPAGEG 91 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC---CCEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEeCCC-CCchHHHHHHHHhhc
Confidence 45789998888777777654 3566999999999999999999873 23444444443332 245556777776655
No 396
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.22 E-value=0.16 Score=56.42 Aligned_cols=87 Identities=22% Similarity=0.263 Sum_probs=49.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcc-cHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHH
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDL-QLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKT 259 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 259 (906)
.+++.++|++|+||||++..++... ........+..|+....- ...+-++...+.++.+.. ...+..++...+.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~~ 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQL 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHHh
Confidence 4699999999999999999887766 101223456667654321 122223333444444321 223344454444432
Q ss_pred hccCcEEEEEccc
Q 002569 260 LSKKKFVLLLDDL 272 (906)
Q Consensus 260 l~~kr~LlVlDdv 272 (906)
. ..=+|++|..
T Consensus 298 -~-~~DlVlIDt~ 308 (424)
T PRK05703 298 -R-DCDVILIDTA 308 (424)
T ss_pred -C-CCCEEEEeCC
Confidence 2 3457888976
No 397
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.21 E-value=0.095 Score=53.40 Aligned_cols=61 Identities=25% Similarity=0.336 Sum_probs=43.6
Q ss_pred HHHHHHHhc-CCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHH
Q 002569 169 EQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQ 230 (906)
Q Consensus 169 ~~l~~~L~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~ 230 (906)
.+++..+.. .++..+|+|.|.+|+|||||.-.+...+ ....+--.++-|+-|.+++--.++
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCcccc
Confidence 455555544 3477899999999999999999998888 444555566667767666544443
No 398
>PRK15453 phosphoribulokinase; Provisional
Probab=94.20 E-value=0.31 Score=50.08 Aligned_cols=80 Identities=16% Similarity=0.100 Sum_probs=44.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCc--ccHHHHHHHHH--HHhCCCCCc--cccCCHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKD--LQLEKIQETIG--KKIGLYTDS--WKDRSLEEKA 253 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~l~~~i~--~~l~~~~~~--~~~~~~~~~~ 253 (906)
+..+|+|.|.+|+||||+|+.+...+. ..-...+.++...- ++....-..+. ++-+..-+. .+..+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~---~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR---RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh---hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 568999999999999999999987762 11112344443322 23333322222 122221111 2445666777
Q ss_pred HHHHHHhcc
Q 002569 254 QDIFKTLSK 262 (906)
Q Consensus 254 ~~l~~~l~~ 262 (906)
+.++....+
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 777766543
No 399
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.19 E-value=0.078 Score=55.19 Aligned_cols=88 Identities=24% Similarity=0.340 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCC
Q 002569 169 EQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRS 248 (906)
Q Consensus 169 ~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~ 248 (906)
..+++.+... .+-+.++|+.|+|||++++....... ...| .+.-++.+...+...+++.+-..+......
T Consensus 23 ~~ll~~l~~~--~~pvLl~G~~GtGKT~li~~~l~~l~--~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~----- 92 (272)
T PF12775_consen 23 SYLLDLLLSN--GRPVLLVGPSGTGKTSLIQNFLSSLD--SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRGR----- 92 (272)
T ss_dssp HHHHHHHHHC--TEEEEEESSTTSSHHHHHHHHHHCST--TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTTE-----
T ss_pred HHHHHHHHHc--CCcEEEECCCCCchhHHHHhhhccCC--cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC-----
Confidence 4455555544 35668999999999999999887762 1222 244556666555554443222222110000
Q ss_pred HHHHHHHHHHHhccCcEEEEEcccc
Q 002569 249 LEEKAQDIFKTLSKKKFVLLLDDLW 273 (906)
Q Consensus 249 ~~~~~~~l~~~l~~kr~LlVlDdv~ 273 (906)
...--.+|+.++.+||+.
T Consensus 93 -------~~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 93 -------VYGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp -------EEEEESSSEEEEEEETTT
T ss_pred -------CCCCCCCcEEEEEecccC
Confidence 000013688899999985
No 400
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.19 E-value=0.19 Score=53.59 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 002569 184 IGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+.+.|++|.||||+++.+.+.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999887
No 401
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.18 E-value=0.057 Score=53.31 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.-.+++|+|..|+|||||++.+..-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 56899999999999999999998765
No 402
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.17 E-value=0.14 Score=49.64 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.-.+++|+|..|.|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45799999999999999999998875
No 403
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.17 E-value=0.11 Score=49.72 Aligned_cols=110 Identities=23% Similarity=0.277 Sum_probs=58.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCc--ccHHHHHHHHHHHhCCCCCccccCCH-HHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKD--LQLEKIQETIGKKIGLYTDSWKDRSL-EEKAQDI 256 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~l~~~i~~~l~~~~~~~~~~~~-~~~~~~l 256 (906)
.-.+++|.|..|.|||||.+.++... ......+++..... .+..+.. ...++.. ..-+. +...-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~----~qLS~G~~qrl~l 93 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDAR---RAGIAMV----YQLSVGERQMVEI 93 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHHH---hcCeEEE----EecCHHHHHHHHH
Confidence 45799999999999999999998875 23344455432111 1111111 1111110 01222 2223344
Q ss_pred HHHhccCcEEEEEccccch---h---hhhhcCCcC-CCCcEEEEEeccccc
Q 002569 257 FKTLSKKKFVLLLDDLWER---V---DLKKVGVPL-PKNSAVVFTTRFVDV 300 (906)
Q Consensus 257 ~~~l~~kr~LlVlDdv~~~---~---~~~~~~~~~-~~gs~iivTtR~~~v 300 (906)
.+.+-.++-++++|+.-.. . .+..+...+ ..|..||++|.+...
T Consensus 94 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 5566677889999997532 1 111111112 226678888876543
No 404
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.17 E-value=0.1 Score=52.40 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=37.2
Q ss_pred HHHHHHHHHhc-CCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCccc
Q 002569 167 QLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQ 225 (906)
Q Consensus 167 ~~~~l~~~L~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 225 (906)
...++++.+.. .++..+|+|.|++|.|||||+..+...+ +.+.+--.++-|+-|.+++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCC
Confidence 34555555544 3467899999999999999999998888 3333333555555555554
No 405
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.16 E-value=0.0021 Score=61.98 Aligned_cols=87 Identities=17% Similarity=0.146 Sum_probs=70.1
Q ss_pred CCCCCCCceEEEeecCCCccccccccCCCCceeEEEccCcccccccccccccccccceeecccCcccccChhhhCCCCCc
Q 002569 533 TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLRQLPMGISKLVSLQLLDISKTSVVELPEELKALVNLK 612 (906)
Q Consensus 533 ~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~ 612 (906)
.+..+...++|+++.|.+..+... |+-++.|..||++.| .+..+|+.++.+..++.+++..|..+.+|.+.+.++.++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 455677788888888876555554 667778888888888 888888888888888888888888888888888888888
Q ss_pred Eeccccccc
Q 002569 613 CLNLDWAKE 621 (906)
Q Consensus 613 ~L~l~~~~~ 621 (906)
++++.++..
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 888888753
No 406
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.16 E-value=0.094 Score=50.96 Aligned_cols=23 Identities=35% Similarity=0.751 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 407
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.14 E-value=0.036 Score=53.81 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999886
No 408
>PRK00625 shikimate kinase; Provisional
Probab=94.12 E-value=0.041 Score=52.91 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.|.++|++|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998886
No 409
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.11 E-value=0.15 Score=47.82 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+|.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999886
No 410
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.11 E-value=0.21 Score=58.01 Aligned_cols=115 Identities=19% Similarity=0.286 Sum_probs=61.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhC---CCCCccccCCHHHHHHHHH
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIG---LYTDSWKDRSLEEKAQDIF 257 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~---~~~~~~~~~~~~~~~~~l~ 257 (906)
.++..|.|.+|.||||+++.+.....+....-...+.+.....--...+...+...+. .... ........+..+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~--~~~~~~~~a~TiH 244 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDE--QKKRIPEEASTLH 244 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchh--hhhcCCCchHHHH
Confidence 4789999999999999999888765221111124566665555445555555443221 1100 0000000112222
Q ss_pred HHhc------------cCc---EEEEEcccc--chhhhhhcCCcCCCCcEEEEEecc
Q 002569 258 KTLS------------KKK---FVLLLDDLW--ERVDLKKVGVPLPKNSAVVFTTRF 297 (906)
Q Consensus 258 ~~l~------------~kr---~LlVlDdv~--~~~~~~~~~~~~~~gs~iivTtR~ 297 (906)
+.|. +.+ -++|+|.+. +......+...++.++|+|+---.
T Consensus 245 rlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~~~~rlIlvGD~ 301 (615)
T PRK10875 245 RLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALPPHARVIFLGDR 301 (615)
T ss_pred HHhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcccCCEEEEecch
Confidence 2221 111 289999975 233444555667778888876543
No 411
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.10 E-value=0.27 Score=56.19 Aligned_cols=97 Identities=18% Similarity=0.169 Sum_probs=59.2
Q ss_pred HHHHHHhcC-CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCc-----
Q 002569 170 QVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDS----- 243 (906)
Q Consensus 170 ~l~~~L~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~----- 243 (906)
.+-+.|..+ ..-.++.|.|++|+|||||+.++..... ..-+.++|+...+. ..++.+.+ ++++.+...
T Consensus 251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~g 324 (484)
T TIGR02655 251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQG 324 (484)
T ss_pred hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhCC
Confidence 344444442 4678999999999999999999988763 34456788776553 45555543 455543211
Q ss_pred --------cccCCHHHHHHHHHHHhcc-CcEEEEEccc
Q 002569 244 --------WKDRSLEEKAQDIFKTLSK-KKFVLLLDDL 272 (906)
Q Consensus 244 --------~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv 272 (906)
....+.++....+.+.+.. +.-.+|+|.+
T Consensus 325 ~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 325 LLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred cEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 0122335555666665543 4456777766
No 412
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.10 E-value=0.48 Score=48.59 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=33.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCC---------CCCEEEEEEeCCcc-cHHHHHHHHHHHh
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKFVDNPT---------DFDSVIWVVVSKDL-QLEKIQETIGKKI 237 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~---------~f~~~~wv~~s~~~-~~~~l~~~i~~~l 237 (906)
+-.|+|++|+|||+||..++-....-.. .-..+++++.-.+. .+.+-+..+...+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~ 67 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHL 67 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhc
Confidence 5679999999999999999876532111 12246666655443 2333344444443
No 413
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.09 E-value=0.049 Score=51.90 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
..++++|+|..|+|||||++.+...+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 56799999999999999999999887
No 414
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.07 E-value=0.19 Score=53.33 Aligned_cols=88 Identities=24% Similarity=0.273 Sum_probs=51.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCC-cccHHHHHHHHHHHhCCCCC----ccccCCHH----
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSK-DLQLEKIQETIGKKIGLYTD----SWKDRSLE---- 250 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~~----~~~~~~~~---- 250 (906)
.-..++|+|..|.|||||++.+.... . -+..++.-+.. ..+..++.......-++... ...+.+..
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~-~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT-T----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC-C----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 45788999999999999999988765 1 23344444443 34556655555554322110 00111111
Q ss_pred ------HHHHHHHHHhccCcEEEEEccccc
Q 002569 251 ------EKAQDIFKTLSKKKFVLLLDDLWE 274 (906)
Q Consensus 251 ------~~~~~l~~~l~~kr~LlVlDdv~~ 274 (906)
..++.+++ +++.+|+++||+-.
T Consensus 143 ~~~~a~~~AEyfr~--~g~~Vll~~Dsltr 170 (326)
T cd01136 143 AAYTATAIAEYFRD--QGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHH--cCCCeEEEeccchH
Confidence 22233332 57899999999843
No 415
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.07 E-value=0.25 Score=47.25 Aligned_cols=81 Identities=17% Similarity=0.270 Sum_probs=46.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccC-CHHHHHHHHHHHhc
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDR-SLEEKAQDIFKTLS 261 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~-~~~~~~~~l~~~l~ 261 (906)
++.|.|..|+|||++|.++.... ...++|+...+.++.+ ..+.|..........+... ....+.+.+.+. .
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~ 72 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKEL-D 72 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C
Confidence 36799999999999999987542 2467888877776553 4444433222112222221 222333333221 2
Q ss_pred cCcEEEEEccc
Q 002569 262 KKKFVLLLDDL 272 (906)
Q Consensus 262 ~kr~LlVlDdv 272 (906)
+.-.+++|.+
T Consensus 73 -~~~~VLIDcl 82 (169)
T cd00544 73 -PGDVVLIDCL 82 (169)
T ss_pred -CCCEEEEEcH
Confidence 2347999987
No 416
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.07 E-value=0.18 Score=55.93 Aligned_cols=93 Identities=17% Similarity=0.284 Sum_probs=57.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcc-cHHHHHHHHHHHhCCCCC----ccccCCHH----
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDL-QLEKIQETIGKKIGLYTD----SWKDRSLE---- 250 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~---- 250 (906)
.-..++|.|.+|+|||||+..+..... ..+-+.++++-+++.. .+.++..++...-.+... ...+.+..
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~--~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 557889999999999999999877662 1222467777776643 566777777654222110 00122222
Q ss_pred --HHHHHHHHHh---ccCcEEEEEccccc
Q 002569 251 --EKAQDIFKTL---SKKKFVLLLDDLWE 274 (906)
Q Consensus 251 --~~~~~l~~~l---~~kr~LlVlDdv~~ 274 (906)
..+-.+.+++ +++.+|+++|++-.
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 1223344554 67899999999853
No 417
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.04 E-value=0.12 Score=56.91 Aligned_cols=91 Identities=24% Similarity=0.263 Sum_probs=51.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCC----ccccCCHHH----
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTD----SWKDRSLEE---- 251 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~----~~~~~~~~~---- 251 (906)
.-..++|+|..|+|||||++.+.... .....++.....+...+.++..+.+..-++... ...+.+...
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~----~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT----DADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC----CCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 45789999999999999999888765 112223332233344556666655444322110 001111111
Q ss_pred --HHHHHHHHh--ccCcEEEEEccccc
Q 002569 252 --KAQDIFKTL--SKKKFVLLLDDLWE 274 (906)
Q Consensus 252 --~~~~l~~~l--~~kr~LlVlDdv~~ 274 (906)
.+..+.+++ +++.+|+++||+-.
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 122233444 47899999999854
No 418
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.00 E-value=0.051 Score=52.69 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
....|.++|++|+||||+|+.++...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999987
No 419
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.99 E-value=0.038 Score=54.90 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+|+|.|..|+||||+++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 420
>COG4240 Predicted kinase [General function prediction only]
Probab=93.94 E-value=0.31 Score=47.42 Aligned_cols=85 Identities=12% Similarity=0.013 Sum_probs=52.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCC--CC-CccccCCHHHHHHH
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGL--YT-DSWKDRSLEEKAQD 255 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~--~~-~~~~~~~~~~~~~~ 255 (906)
++.-+++|.|+-|+||||++..+++... .+.. ..++..+..+-+-...-.-.++++... .. +-...-+..-....
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~-~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLA-AKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHH-Hhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 4688999999999999999999999983 2332 466766665544444444445554310 00 00123455556666
Q ss_pred HHHHhccCcE
Q 002569 256 IFKTLSKKKF 265 (906)
Q Consensus 256 l~~~l~~kr~ 265 (906)
+....+++.-
T Consensus 126 Lnai~~g~~~ 135 (300)
T COG4240 126 LNAIARGGPT 135 (300)
T ss_pred HHHHhcCCCC
Confidence 6666666643
No 421
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=93.94 E-value=0.26 Score=50.62 Aligned_cols=69 Identities=25% Similarity=0.304 Sum_probs=42.5
Q ss_pred HHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCC-------CEEEEEEeCCc-ccHHHHHHHHHHHhCCCC
Q 002569 170 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF-------DSVIWVVVSKD-LQLEKIQETIGKKIGLYT 241 (906)
Q Consensus 170 ~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-------~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~ 241 (906)
-|-+++..+ -++.|.|.||+|||||+-..+=.....++-| ..+++|++-.. .++-.=++.+..+++++.
T Consensus 81 lId~~fr~g---~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 81 LIDEFFRKG---YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred hhhHHhhcC---eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 334444444 4556779999999999876554432222223 36777776543 245555677788887754
No 422
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.93 E-value=0.09 Score=47.41 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKD 223 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 223 (906)
..+-|.|.|.+|+||||++..++... .| -|+++|+-
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~-----~~---~~i~isd~ 41 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT-----GL---EYIEISDL 41 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh-----CC---ceEehhhH
Confidence 35678999999999999999998664 23 36666653
No 423
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.91 E-value=0.057 Score=52.43 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
...+|.|+|.+|+||||+|+.++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999987
No 424
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.88 E-value=0.042 Score=53.79 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+|.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998876
No 425
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.87 E-value=0.033 Score=30.33 Aligned_cols=16 Identities=38% Similarity=0.698 Sum_probs=5.4
Q ss_pred ccceeecccCcccccC
Q 002569 587 SLQLLDISKTSVVELP 602 (906)
Q Consensus 587 ~L~~L~L~~~~i~~lp 602 (906)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444444444444443
No 426
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.86 E-value=0.088 Score=51.49 Aligned_cols=38 Identities=32% Similarity=0.463 Sum_probs=30.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeC
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVS 221 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 221 (906)
.++|.|+|+.|+|||||++.+.... ...|...+..+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeeccc
Confidence 4789999999999999999999987 4677655555543
No 427
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.86 E-value=0.16 Score=55.99 Aligned_cols=90 Identities=22% Similarity=0.331 Sum_probs=54.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcc-cHHHHHHHHHHHhCCCCC----ccccCCHHH---
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDL-QLEKIQETIGKKIGLYTD----SWKDRSLEE--- 251 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~~--- 251 (906)
+-..++|.|..|+|||||.+.+++.. .-+.++++-+++.. ...++....+..-++... ...+.+...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 56789999999999999999998875 23567777776653 455555444432221110 001122211
Q ss_pred ---HHHHHHHHh--ccCcEEEEEccccc
Q 002569 252 ---KAQDIFKTL--SKKKFVLLLDDLWE 274 (906)
Q Consensus 252 ---~~~~l~~~l--~~kr~LlVlDdv~~ 274 (906)
.+..+.+++ +++++|+++||+-.
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 112233333 58999999999854
No 428
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.84 E-value=0.14 Score=53.19 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcc
Q 002569 182 GIIGLYGMGGVGKTTLLTQINNKFV 206 (906)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (906)
+.|.|.|.+|+||||+|+.+...+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 5789999999999999999999873
No 429
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.81 E-value=0.17 Score=55.79 Aligned_cols=93 Identities=23% Similarity=0.345 Sum_probs=58.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcc-cHHHHHHHHHHHhCCCCC----ccccCCHH----
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDL-QLEKIQETIGKKIGLYTD----SWKDRSLE---- 250 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~---- 250 (906)
+-..++|.|.+|+|||+|+..+..... +.+-+.++|+-+++.. ...++.+++...-.+... ...+.+..
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~--~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV--GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 457889999999999999999888752 2334688888887654 456666666553222110 00112221
Q ss_pred --HHHHHHHHHh---ccCcEEEEEccccc
Q 002569 251 --EKAQDIFKTL---SKKKFVLLLDDLWE 274 (906)
Q Consensus 251 --~~~~~l~~~l---~~kr~LlVlDdv~~ 274 (906)
..+-.+.+++ +++++|+++||+-.
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 1223344554 36899999999854
No 430
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.79 E-value=0.054 Score=52.81 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 182 GIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.++.|+|+.|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998876
No 431
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=0.34 Score=48.09 Aligned_cols=46 Identities=26% Similarity=0.327 Sum_probs=35.4
Q ss_pred cccchhHHHHHHHHHHhcC------------CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 160 TVVGLQSQLEQVWRCLVQE------------PAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
++-|-.+.++++.+...-. ...+-|..+|++|.|||-+|++|+|+-
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 4556677777777664310 356788999999999999999999986
No 432
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.73 E-value=0.11 Score=56.65 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.-.+++|+|++|.||||||+.+..-.
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHccc
Confidence 45789999999999999999987644
No 433
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.66 E-value=0.17 Score=52.72 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=42.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCC
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGL 239 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~ 239 (906)
+.-+++.|.|.+|+|||+++.++.... ......++||+.... ..++.+.+.. ++.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~-~g~ 75 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS-FGW 75 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH-cCC
Confidence 467999999999999999999988887 345888999988764 4455544443 543
No 434
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.65 E-value=0.11 Score=54.84 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=42.0
Q ss_pred CcccchhHHHHHHHHHHhc-----CCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 159 PTVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
..++|.++.++++++.+.. +.+-+++.++|+.|.||||||+.+.+-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999864 2467999999999999999999998887
No 435
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.61 E-value=0.35 Score=53.65 Aligned_cols=91 Identities=14% Similarity=0.159 Sum_probs=53.3
Q ss_pred CCeEEEEEcCCCCcHHHHH-HHHHHhcccC-----CCCCCEEEEEEeCCccc-HHHHHHHHHHHhC-CCCCc----cccC
Q 002569 180 AAGIIGLYGMGGVGKTTLL-TQINNKFVDN-----PTDFDSVIWVVVSKDLQ-LEKIQETIGKKIG-LYTDS----WKDR 247 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~~f~~~~wv~~s~~~~-~~~l~~~i~~~l~-~~~~~----~~~~ 247 (906)
+-.-++|.|..|+|||+|| -.+.+.. .+ ..+-+.++++.+++... +.+ +.+.+++-+ +...- ..+.
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAde 265 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAAE 265 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCCC
Confidence 4567899999999999997 5556553 11 12446788888887654 344 444444433 21100 0111
Q ss_pred CH----------HHHHHHHHHHhccCcEEEEEccccc
Q 002569 248 SL----------EEKAQDIFKTLSKKKFVLLLDDLWE 274 (906)
Q Consensus 248 ~~----------~~~~~~l~~~l~~kr~LlVlDdv~~ 274 (906)
+. -..++.+++ +++.+|+|+||+..
T Consensus 266 p~~~r~~Apy~a~tiAEYFrd--~GkdVLiv~DDLTr 300 (574)
T PTZ00185 266 PAGLQYLAPYSGVTMGEYFMN--RGRHCLCVYDDLSK 300 (574)
T ss_pred CHHHHHHHHHHHHHHHHHHHH--cCCCEEEEEcCchH
Confidence 11 122333332 47899999999854
No 436
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.60 E-value=0.17 Score=54.78 Aligned_cols=63 Identities=25% Similarity=0.302 Sum_probs=48.1
Q ss_pred cccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHH
Q 002569 160 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQE 231 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~ 231 (906)
.++|.++.+..+...+..+ +-+.+.|.+|+|||+||+.++... . -...+|.+.......++..
T Consensus 25 ~~~g~~~~~~~~l~a~~~~---~~vll~G~PG~gKT~la~~lA~~l---~---~~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 25 VVVGDEEVIELALLALLAG---GHVLLEGPPGVGKTLLARALARAL---G---LPFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeeccHHHHHHHHHHHHcC---CCEEEECCCCccHHHHHHHHHHHh---C---CCeEEEecCCCCCHHHhcC
Confidence 3789888888887777765 678899999999999999999987 2 2335566666666666543
No 437
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.60 E-value=0.086 Score=55.93 Aligned_cols=47 Identities=23% Similarity=0.283 Sum_probs=33.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHH
Q 002569 182 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQE 231 (906)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~ 231 (906)
+++.+.|-||+||||+|.+.+-..++ .-..++-++.....++.+++.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~---~G~rtLlvS~Dpa~~L~d~l~ 48 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR---RGKRTLLVSTDPAHSLSDVLG 48 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH---TTS-EEEEESSTTTHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh---CCCCeeEeecCCCccHHHHhC
Confidence 68999999999999999888777742 234566666665555555543
No 438
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.59 E-value=0.18 Score=50.35 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 178 EPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 178 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
++++++|+++|..|+|||||..++....
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3489999999999999999999998875
No 439
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.58 E-value=0.19 Score=51.56 Aligned_cols=95 Identities=15% Similarity=0.199 Sum_probs=54.4
Q ss_pred CCeEEEEEcCCCCcHHHHH-HHHHHhcccCCCCCCEE-EEEEeCCcc-cHHHHHHHHHHHhCCCCC----ccccCCHH--
Q 002569 180 AAGIIGLYGMGGVGKTTLL-TQINNKFVDNPTDFDSV-IWVVVSKDL-QLEKIQETIGKKIGLYTD----SWKDRSLE-- 250 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~-~wv~~s~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~-- 250 (906)
+-..++|+|..|+|||+|| ..+.+.. +-+.+ +++-+.+.. ...++..++.+.-..... ...+.+..
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 4577899999999999996 5565542 22333 666666653 466666666643221100 00111111
Q ss_pred --------HHHHHHHHHhccCcEEEEEccccch-hhhhhc
Q 002569 251 --------EKAQDIFKTLSKKKFVLLLDDLWER-VDLKKV 281 (906)
Q Consensus 251 --------~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~ 281 (906)
..++.++. +++.+|+++||+-.. ..+.++
T Consensus 143 ~~a~~~a~aiAE~fr~--~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 143 YLAPYTGCAMGEYFMD--NGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHHH--CCCCEEEEEcChHHHHHHHHHH
Confidence 22333333 478999999998543 334444
No 440
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=2.2 Score=48.92 Aligned_cols=149 Identities=17% Similarity=0.156 Sum_probs=78.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHh
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTL 260 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 260 (906)
..-|..+|++|+|||.||.+++... . .-++.|..+ +++.+- +| .+++.....+.+.-
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~-----~---~~fisvKGP----ElL~Ky---IG--------aSEq~vR~lF~rA~ 757 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNS-----N---LRFISVKGP----ELLSKY---IG--------ASEQNVRDLFERAQ 757 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhC-----C---eeEEEecCH----HHHHHH---hc--------ccHHHHHHHHHHhh
Confidence 4568999999999999999998775 1 234566543 222211 12 23334444444445
Q ss_pred ccCcEEEEEccccchh-------------hhhhcCCcC-----CCCcEEEEEecccccccC----CCcc-ceEEeccCCh
Q 002569 261 SKKKFVLLLDDLWERV-------------DLKKVGVPL-----PKNSAVVFTTRFVDVCGG----MEAR-RKFKVECLSD 317 (906)
Q Consensus 261 ~~kr~LlVlDdv~~~~-------------~~~~~~~~~-----~~gs~iivTtR~~~v~~~----~~~~-~~~~l~~L~~ 317 (906)
..+++++.+|..+... ....+...+ -+|.-|+.+|...+.... -+.. +.+.-+.-++
T Consensus 758 ~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~ 837 (952)
T KOG0735|consen 758 SAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDE 837 (952)
T ss_pred ccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCc
Confidence 5699999999986431 112221111 126666665544444221 1221 2222333445
Q ss_pred HhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHH
Q 002569 318 EDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLA 356 (906)
Q Consensus 318 ~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Pla 356 (906)
.|-.+++...+....... ....+.++.+.+|..-|
T Consensus 838 ~eRl~il~~ls~s~~~~~----~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 838 PERLEILQVLSNSLLKDT----DVDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHHHHHhhccCCcc----ccchHHHhhhcCCCchh
Confidence 566667766654332122 22345566777776544
No 441
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.53 E-value=0.12 Score=49.52 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=38.4
Q ss_pred ccchhHHHHHHHHHHhc-CCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCC
Q 002569 161 VVGLQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSK 222 (906)
Q Consensus 161 ~vgr~~~~~~l~~~L~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 222 (906)
++|....+.++++.+.. .....-|.|+|..|+||+.+|+.+++.-. ..-...+-|+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~---r~~~pfi~vnc~~ 60 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP---RKNGPFISVNCAA 60 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST---TTTS-EEEEETTT
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh---cccCCeEEEehhh
Confidence 46777888888887754 11335567999999999999999999652 2223344555554
No 442
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.53 E-value=0.069 Score=51.81 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.++|.+.|++|+||||+|+.+....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999998875
No 443
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.52 E-value=0.21 Score=50.84 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=37.8
Q ss_pred cccchhHHHHHHHHHHhc------CCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 160 TVVGLQSQLEQVWRCLVQ------EPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.++|..-.++.|+..+.+ ..+.=+++.+|..|+||..+++.+++..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 467877777777777754 2467799999999999999999999987
No 444
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.51 E-value=0.11 Score=54.83 Aligned_cols=49 Identities=27% Similarity=0.339 Sum_probs=36.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHH
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQET 232 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~ 232 (906)
.+++.+.|.||+||||+|.+.+-..+ .....++-|++....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA---~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA---ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH---HcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999766663 22244777777766666666554
No 445
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.51 E-value=0.055 Score=50.66 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+|.|.|..|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 446
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.51 E-value=0.42 Score=45.46 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=61.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEE---EEEeCCcccHHHHHHHHHHHhCC--CCC--ccccCC----
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVI---WVVVSKDLQLEKIQETIGKKIGL--YTD--SWKDRS---- 248 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~---wv~~s~~~~~~~l~~~i~~~l~~--~~~--~~~~~~---- 248 (906)
+...|-|++..|.||||.|..++-+.. ...+ .++ |+...........+... .+.. ... .+...+
T Consensus 4 ~~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~-~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~ 78 (173)
T TIGR00708 4 ERGIIIVHTGNGKGKTTAAFGMALRAL--GHGK-KVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREAD 78 (173)
T ss_pred cccEEEEECCCCCChHHHHHHHHHHHH--HCCC-eEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHH
Confidence 347888999999999999988887762 2233 333 33333223444444332 1110 000 011111
Q ss_pred ---HHHHHHHHHHHhccCc-EEEEEccccch--------hhhhhcCCcCCCCcEEEEEeccc
Q 002569 249 ---LEEKAQDIFKTLSKKK-FVLLLDDLWER--------VDLKKVGVPLPKNSAVVFTTRFV 298 (906)
Q Consensus 249 ---~~~~~~~l~~~l~~kr-~LlVlDdv~~~--------~~~~~~~~~~~~gs~iivTtR~~ 298 (906)
..+.....++.+...+ =+||||.+-.. +++..+...-|.+.-||+|-|+.
T Consensus 79 ~~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 79 TAIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1122233344444444 49999998432 33334444455588999999964
No 447
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.49 E-value=0.27 Score=54.34 Aligned_cols=93 Identities=16% Similarity=0.286 Sum_probs=57.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCc-ccHHHHHHHHHHHhCCCCC----ccccCCHHH---
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKD-LQLEKIQETIGKKIGLYTD----SWKDRSLEE--- 251 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~----~~~~~~~~~--- 251 (906)
+-..++|.|.+|+|||||+..+..... ..+-..++++-+++. ..+.++..++...-.+... ...+.+...
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 557889999999999999999887752 122346777777664 3566777766543222110 001222221
Q ss_pred ---HHHHHHHHh---ccCcEEEEEccccc
Q 002569 252 ---KAQDIFKTL---SKKKFVLLLDDLWE 274 (906)
Q Consensus 252 ---~~~~l~~~l---~~kr~LlVlDdv~~ 274 (906)
.+-.+.+++ +++.+|+++||+-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 223344555 46899999999954
No 448
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.46 E-value=0.27 Score=54.11 Aligned_cols=94 Identities=13% Similarity=0.197 Sum_probs=57.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCC--CCCC---------EEEEEEeCCcccHHHHHHHHHHHhCCCCCc-----
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNP--TDFD---------SVIWVVVSKDLQLEKIQETIGKKIGLYTDS----- 243 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~---------~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~----- 243 (906)
.-.-++|.|.+|+|||||+..+.+.. ... ...| .+++.-+++.....+.+.+.+..-+.-...
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~-~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQA-GLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhh-ccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 45778999999999999999988775 210 0012 567777887766666666666555421110
Q ss_pred cccCCH-H-----HHHHHHHHHhc---cCcEEEEEccccc
Q 002569 244 WKDRSL-E-----EKAQDIFKTLS---KKKFVLLLDDLWE 274 (906)
Q Consensus 244 ~~~~~~-~-----~~~~~l~~~l~---~kr~LlVlDdv~~ 274 (906)
..+.+. . ..+-.+.++++ ++++|+++||+-.
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 011111 1 11223445544 6899999999843
No 449
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.45 E-value=0.16 Score=48.31 Aligned_cols=111 Identities=23% Similarity=0.264 Sum_probs=58.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcc--cHHHHHHHHHHHhCCCCCccccCCHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDL--QLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIF 257 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 257 (906)
.-.+++|+|..|.|||||++.+.... ......+++...... ..... ...++... +-..-+...-.+.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~---qlS~G~~~r~~l~ 92 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEEL----RRRIGYVP---QLSGGQRQRVALA 92 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHHH----HhceEEEe---eCCHHHHHHHHHH
Confidence 44799999999999999999998876 233455554322111 11111 11111100 0111222223345
Q ss_pred HHhccCcEEEEEccccch---h---hhhhcCCcCC-CCcEEEEEecccccc
Q 002569 258 KTLSKKKFVLLLDDLWER---V---DLKKVGVPLP-KNSAVVFTTRFVDVC 301 (906)
Q Consensus 258 ~~l~~kr~LlVlDdv~~~---~---~~~~~~~~~~-~gs~iivTtR~~~v~ 301 (906)
..+...+-++++|+.-.. . .+..+...+. .+..+|++|-+....
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 143 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELA 143 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 555667889999997532 1 1212111111 146777777655443
No 450
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.44 E-value=0.31 Score=53.96 Aligned_cols=91 Identities=22% Similarity=0.252 Sum_probs=52.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCC----ccccCCHH-----
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTD----SWKDRSLE----- 250 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~----~~~~~~~~----- 250 (906)
+-..++|.|..|+|||||++.++... . .-..+++..-.+.....++.+.+...-++... ...+.+..
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~-~---~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGT-Q---CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-C---CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 56789999999999999999998765 1 11234444434444566666666544322110 00111111
Q ss_pred -HHHHHHHHHh--ccCcEEEEEccccc
Q 002569 251 -EKAQDIFKTL--SKKKFVLLLDDLWE 274 (906)
Q Consensus 251 -~~~~~l~~~l--~~kr~LlVlDdv~~ 274 (906)
..+-.+.+++ +++.+|+++||+-.
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1122233333 47899999999854
No 451
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.44 E-value=0.2 Score=50.95 Aligned_cols=78 Identities=12% Similarity=0.036 Sum_probs=42.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcc--cHHHHHHHHHHHh----CCCCCccccCCHHHHHHHH
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDL--QLEKIQETIGKKI----GLYTDSWKDRSLEEKAQDI 256 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~l~~~i~~~l----~~~~~~~~~~~~~~~~~~l 256 (906)
+|+|.|.+|+||||+++.+...+. . .-..++.++...-. +-...-..+.+.. +.+.-+....+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~-~--~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA-R--EGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH-h--cCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 589999999999999999988772 1 11224444433222 2222222222221 1111112445666777777
Q ss_pred HHHhccC
Q 002569 257 FKTLSKK 263 (906)
Q Consensus 257 ~~~l~~k 263 (906)
+...+++
T Consensus 78 ~~L~~g~ 84 (277)
T cd02029 78 RTYGETG 84 (277)
T ss_pred HHHHcCC
Confidence 7666654
No 452
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.42 E-value=0.048 Score=65.31 Aligned_cols=190 Identities=18% Similarity=0.133 Sum_probs=86.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCc-cccCCHHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDS-WKDRSLEEKAQDIFK 258 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 258 (906)
+..++.|+|+.|.||||+.+.+......... .++|.+..... -..+..+...++....- ....+...-...+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~----G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQS----GIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHh----CCCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 4579999999999999999998766200000 11111111000 00011111111100000 000111111112222
Q ss_pred Hhc--cCcEEEEEccccch---hhhh----hcCCcCC-CCcEEEEEecccccccCCCccceEEecc--CChHhHHHHHHH
Q 002569 259 TLS--KKKFVLLLDDLWER---VDLK----KVGVPLP-KNSAVVFTTRFVDVCGGMEARRKFKVEC--LSDEDAWELFRE 326 (906)
Q Consensus 259 ~l~--~kr~LlVlDdv~~~---~~~~----~~~~~~~-~gs~iivTtR~~~v~~~~~~~~~~~l~~--L~~~e~~~Lf~~ 326 (906)
.+. ..+-|+++|..... .+-. .+...+. .|+.+|+||-...+.........+.-.. ++.+ ... |..
T Consensus 396 il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~-~l~-p~Y 473 (771)
T TIGR01069 396 ILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFDEE-TLS-PTY 473 (771)
T ss_pred HHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCC-CCc-eEE
Confidence 332 47899999998642 1111 1212222 2889999998766532211111111111 1111 000 001
Q ss_pred HhccccccCCCCchHHHHHHHHHhCCChHHHHHHHHHhhcCCCHHHHHHHHHHHhhh
Q 002569 327 KVGEETIESHHSIPELAQTVANECGGLPLALITIGRAMAYKKTPEEWRYAIEVLRRS 383 (906)
Q Consensus 327 ~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~l~~~~~~~~w~~~~~~l~~~ 383 (906)
+.-.. .+. ...|-.|++++ |+|-.|..-|..+.. ....+++.+++.++..
T Consensus 474 kl~~G--~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~~ 523 (771)
T TIGR01069 474 KLLKG--IPG---ESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSAL 523 (771)
T ss_pred EECCC--CCC---CcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence 11000 011 34677788876 788888877777754 3455667666666554
No 453
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.41 E-value=0.46 Score=50.67 Aligned_cols=26 Identities=35% Similarity=0.583 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
...+++++|+.|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56899999999999999999999887
No 454
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.41 E-value=0.068 Score=47.91 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 002569 184 IGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~ 205 (906)
|.|+|..|+|||||++.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999876
No 455
>PLN02348 phosphoribulokinase
Probab=93.38 E-value=0.1 Score=56.14 Aligned_cols=37 Identities=27% Similarity=0.477 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 169 EQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 169 ~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
..+.......+...+|+|.|.+|+||||+|+.+.+.+
T Consensus 37 ~~~~~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 37 SSVVVALAADDGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred HHHHHhhccCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444444444477899999999999999999999987
No 456
>PRK13949 shikimate kinase; Provisional
Probab=93.36 E-value=0.075 Score=51.06 Aligned_cols=24 Identities=38% Similarity=0.414 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 182 GIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+-|.|+|+.|+||||+++.++...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999987
No 457
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.35 E-value=0.093 Score=51.46 Aligned_cols=94 Identities=18% Similarity=0.129 Sum_probs=49.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHHh
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKTL 260 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 260 (906)
...+.|+|..|.||||+++.+..... ... .++.+.-....... ..... ++................+.++..+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~---~~~-~~i~ied~~E~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l 97 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP---PDE-RIITIEDTAELQLP--HPNWV-RLVTRPGNVEGSGEVTMADLLRSAL 97 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC---CCC-CEEEECCccccCCC--CCCEE-EEEEecCCCCCCCccCHHHHHHHHh
Confidence 47899999999999999999988762 221 22222111000000 00000 0000000000111223444555667
Q ss_pred ccCcEEEEEccccchhhhhhc
Q 002569 261 SKKKFVLLLDDLWERVDLKKV 281 (906)
Q Consensus 261 ~~kr~LlVlDdv~~~~~~~~~ 281 (906)
+..+=.++++.+.+.+.+..+
T Consensus 98 R~~pd~i~igEir~~ea~~~~ 118 (186)
T cd01130 98 RMRPDRIIVGEVRGGEALDLL 118 (186)
T ss_pred ccCCCEEEEEccCcHHHHHHH
Confidence 777888999999887665544
No 458
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.34 E-value=0.91 Score=48.17 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=42.3
Q ss_pred HHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcc-cHHHHHHHHH
Q 002569 170 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDL-QLEKIQETIG 234 (906)
Q Consensus 170 ~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~ 234 (906)
++++.+..=.+-..++|.|..|+|||+|++++.+.. +-+.++++-+++.. ...+++.++-
T Consensus 146 rvID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 146 RVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred hhhhccccccCCCEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 345555432345789999999999999999998864 33578888887653 4556666553
No 459
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.33 E-value=0.35 Score=54.15 Aligned_cols=88 Identities=20% Similarity=0.315 Sum_probs=48.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCC-cccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHH
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSK-DLQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKT 259 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 259 (906)
..|++++|+.|+||||++..++.... .......+..+.... .....+-++...+..++... ...+..+....+ ..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~-~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~--~~~~~~Dl~~aL-~~ 331 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV-MRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVH--AVKDAADLRLAL-SE 331 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH-HhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCee--ccCCchhHHHHH-Hh
Confidence 47999999999999999999988762 122222455555432 12333444555555554321 111222222222 23
Q ss_pred hccCcEEEEEcccc
Q 002569 260 LSKKKFVLLLDDLW 273 (906)
Q Consensus 260 l~~kr~LlVlDdv~ 273 (906)
+.++ -.+++|-..
T Consensus 332 L~d~-d~VLIDTaG 344 (484)
T PRK06995 332 LRNK-HIVLIDTIG 344 (484)
T ss_pred ccCC-CeEEeCCCC
Confidence 3333 467777764
No 460
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.32 E-value=0.11 Score=59.10 Aligned_cols=56 Identities=23% Similarity=0.373 Sum_probs=44.0
Q ss_pred cccchhHHHHHHHHHHhcC----CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEe
Q 002569 160 TVVGLQSQLEQVWRCLVQE----PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVV 220 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 220 (906)
+++--.+-++++..||... ...+++.+.|++|+||||.++.+++.. .|+.+-|.+.
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~np 79 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWINP 79 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecCC
Confidence 3455567788889998651 246799999999999999999999987 5777778653
No 461
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.30 E-value=0.065 Score=49.96 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 002569 183 IIGLYGMGGVGKTTLLTQIN 202 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~ 202 (906)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 462
>PF13245 AAA_19: Part of AAA domain
Probab=93.28 E-value=0.2 Score=40.59 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=18.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.+++.|.|++|.|||+++.......
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4778899999999995554444433
No 463
>PTZ00494 tuzin-like protein; Provisional
Probab=93.27 E-value=2.1 Score=46.45 Aligned_cols=162 Identities=13% Similarity=0.064 Sum_probs=96.1
Q ss_pred CCcccchhHHHHHHHHHHhc--CCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHH
Q 002569 158 EPTVVGLQSQLEQVWRCLVQ--EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGK 235 (906)
Q Consensus 158 ~~~~vgr~~~~~~l~~~L~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~ 235 (906)
...+|.|+++-..+.+.|.. ...++++.+.|.-|.||++|.+...... . -..++|++... ++-++.+.+
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE-~-----~paV~VDVRg~---EDtLrsVVK 440 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE-G-----VALVHVDVGGT---EDTLRSVVR 440 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc-C-----CCeEEEEecCC---cchHHHHHH
Confidence 45689999888888777765 2478999999999999999999887765 2 24677888765 456788889
Q ss_pred HhCCCCCccccCCHHHHHHHHHH---HhccCcEEEEEc--cccch-hhhhhcCCcCCC--CcEEEEEecccccccC---C
Q 002569 236 KIGLYTDSWKDRSLEEKAQDIFK---TLSKKKFVLLLD--DLWER-VDLKKVGVPLPK--NSAVVFTTRFVDVCGG---M 304 (906)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~l~~---~l~~kr~LlVlD--dv~~~-~~~~~~~~~~~~--gs~iivTtR~~~v~~~---~ 304 (906)
.++.+.-+.=.+-.+-+.+..+. ...++.-+||+- +-.+. ....+......+ -|.|++----+.+.-. .
T Consensus 441 ALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~~L 520 (664)
T PTZ00494 441 ALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNVSS 520 (664)
T ss_pred HhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhccC
Confidence 98876421111112222222222 233444455542 21111 011111111111 4667664443333211 1
Q ss_pred CccceEEeccCChHhHHHHHHHHh
Q 002569 305 EARRKFKVECLSDEDAWELFREKV 328 (906)
Q Consensus 305 ~~~~~~~l~~L~~~e~~~Lf~~~a 328 (906)
..-..|.+++++.++|.++..+..
T Consensus 521 PRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 521 RRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ccceeEecCCcCHHHHHHHHhccc
Confidence 233578999999999999887765
No 464
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.27 E-value=1.2 Score=45.20 Aligned_cols=167 Identities=17% Similarity=0.217 Sum_probs=89.0
Q ss_pred cccchhHHHHHHHHHHh---------cC--CCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHH
Q 002569 160 TVVGLQSQLEQVWRCLV---------QE--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEK 228 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~---------~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 228 (906)
++-|-|...+.+.+... .+ ..-+-|.++|++|.||+.||++|+... .. -|++||.. +
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nS-----TFFSvSSS----D 201 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NS-----TFFSVSSS----D 201 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CC-----ceEEeehH----H
Confidence 46788888888777642 11 135789999999999999999999886 12 23444432 1
Q ss_pred HHHHHHHHhCCCCCccccCCHHHHHHHHHHHh-ccCcEEEEEccccch---------hhhh--------hcCCcCCC--C
Q 002569 229 IQETIGKKIGLYTDSWKDRSLEEKAQDIFKTL-SKKKFVLLLDDLWER---------VDLK--------KVGVPLPK--N 288 (906)
Q Consensus 229 l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~---------~~~~--------~~~~~~~~--g 288 (906)
+.... +| ..+.+...+.+.- .+|+-+|.+|.++.. +.-. .+...-.+ |
T Consensus 202 LvSKW---mG---------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 202 LVSKW---MG---------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred HHHHH---hc---------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCc
Confidence 21111 11 1234444454443 468889999998532 1111 11111111 5
Q ss_pred cEEEEEecccccccCCC--c-cceEEeccCChHhHHH-HHHHHhccccccCCCCchHHHHHHHHHhCCCh
Q 002569 289 SAVVFTTRFVDVCGGME--A-RRKFKVECLSDEDAWE-LFREKVGEETIESHHSIPELAQTVANECGGLP 354 (906)
Q Consensus 289 s~iivTtR~~~v~~~~~--~-~~~~~l~~L~~~e~~~-Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~P 354 (906)
.-|+-+|...-+..+.- . ...+ -=||.+..|.. +|+-+.|...... -++-.+.+.++..|..
T Consensus 270 vLVLgATNiPw~LDsAIRRRFekRI-YIPLPe~~AR~~MF~lhlG~tp~~L---T~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRRRFEKRI-YIPLPEAHARARMFKLHLGDTPHVL---TEQDFKELARKTEGYS 335 (439)
T ss_pred eEEEecCCCchhHHHHHHHHhhcce-eccCCcHHHhhhhheeccCCCcccc---chhhHHHHHhhcCCCC
Confidence 55666676554433210 0 0111 12455555554 4555555433111 1344566667776654
No 465
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.27 E-value=0.46 Score=52.31 Aligned_cols=60 Identities=23% Similarity=0.304 Sum_probs=35.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCC-cccHHHHHHHHHHHhCCC
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSK-DLQLEKIQETIGKKIGLY 240 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~l~~~i~~~l~~~ 240 (906)
...+|+++|+.|+||||++..+.... ........+..+.... .....+-+....+.++++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp 250 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVS 250 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCc
Confidence 35799999999999999999887754 1112223444444322 112333344455555544
No 466
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.26 E-value=0.29 Score=46.94 Aligned_cols=83 Identities=13% Similarity=0.223 Sum_probs=45.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCcccc-CCHHHHHHHHHHHh
Q 002569 182 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKD-RSLEEKAQDIFKTL 260 (906)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~-~~~~~~~~~l~~~l 260 (906)
.++.|.|.+|+||||+|..+.... . . .++++.....++ .+..+.|..........|.. .....+...+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~-~--~---~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS-G--L---QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc-C--C---CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 368999999999999999998765 1 1 244555544433 34444443332222222211 11223444444333
Q ss_pred ccCcEEEEEccc
Q 002569 261 SKKKFVLLLDDL 272 (906)
Q Consensus 261 ~~kr~LlVlDdv 272 (906)
.+ .-++++|.+
T Consensus 75 ~~-~~~VlID~L 85 (170)
T PRK05800 75 AP-GRCVLVDCL 85 (170)
T ss_pred CC-CCEEEehhH
Confidence 32 337889987
No 467
>PRK13947 shikimate kinase; Provisional
Probab=93.25 E-value=0.069 Score=51.60 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.|.|+|++|+||||+|+.+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 468
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.22 E-value=0.17 Score=54.89 Aligned_cols=101 Identities=18% Similarity=0.320 Sum_probs=54.8
Q ss_pred HHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHH--HHHHHhCCCCCccccCC
Q 002569 171 VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQE--TIGKKIGLYTDSWKDRS 248 (906)
Q Consensus 171 l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~--~i~~~l~~~~~~~~~~~ 248 (906)
+.+.+.. ....|.|+|+.|+||||+++.+.+........=..++.+.-.-.+....+.. ....+... ..+
T Consensus 126 ~~~~~~~--~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v------~~~ 197 (358)
T TIGR02524 126 IIDAIAP--QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEI------PRH 197 (358)
T ss_pred HHHHHhc--cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeec------ccc
Confidence 3444432 3589999999999999999999877521101111233332211121111110 00111100 111
Q ss_pred HHHHHHHHHHHhccCcEEEEEccccchhhhh
Q 002569 249 LEEKAQDIFKTLSKKKFVLLLDDLWERVDLK 279 (906)
Q Consensus 249 ~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~ 279 (906)
.......++..++..+-.+++..+.+.+...
T Consensus 198 ~~~~~~~l~~aLR~~Pd~i~vGEiRd~et~~ 228 (358)
T TIGR02524 198 LNNFAAGVRNALRRKPHAILVGEARDAETIS 228 (358)
T ss_pred ccCHHHHHHHHhccCCCEEeeeeeCCHHHHH
Confidence 2234555667888889999999998776554
No 469
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.22 E-value=0.33 Score=54.05 Aligned_cols=94 Identities=12% Similarity=0.141 Sum_probs=55.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCC--EEEEEEeCCc-ccHHHHHHHHHHHhCCCCC----ccccCCHH--
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD--SVIWVVVSKD-LQLEKIQETIGKKIGLYTD----SWKDRSLE-- 250 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~----~~~~~~~~-- 250 (906)
.-.-++|.|..|+|||||+..+.+.. .....+. .++++-+++. ....++...+...-.+... ...+.+..
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 45678999999999999999988865 2211111 5666666654 3566666666643222110 00111111
Q ss_pred ----HHHHHHHHHhc---cCcEEEEEccccc
Q 002569 251 ----EKAQDIFKTLS---KKKFVLLLDDLWE 274 (906)
Q Consensus 251 ----~~~~~l~~~l~---~kr~LlVlDdv~~ 274 (906)
..+..+.++++ ++++|+++||+-.
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 12233445544 6889999999854
No 470
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.20 E-value=0.076 Score=48.99 Aligned_cols=23 Identities=48% Similarity=0.761 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998875
No 471
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.18 E-value=0.066 Score=50.42 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998875
No 472
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.18 E-value=0.13 Score=55.00 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=37.7
Q ss_pred cccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 160 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.+||.+..+..++-.+.+. ...-+.|.|..|+|||||++.+..-.
T Consensus 5 ~ivgq~~~~~al~~~~~~~-~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDP-KIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccHHHHHHHHHHHhcCC-CCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 4799999988887776665 56678899999999999999998765
No 473
>PRK14530 adenylate kinase; Provisional
Probab=93.17 E-value=0.075 Score=53.53 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 182 GIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 474
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.16 E-value=0.089 Score=52.18 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 179 PAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
++..+|.|+|.+|+||||+|+.+...+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999876
No 475
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.15 E-value=0.3 Score=51.59 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=40.6
Q ss_pred ccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHH
Q 002569 161 VVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQ 230 (906)
Q Consensus 161 ~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~ 230 (906)
++=..+....++.++..+ +.|.|.|.+|+||||+|+.++... ... .+.|..+...+..++.
T Consensus 47 y~f~~~~~~~vl~~l~~~---~~ilL~G~pGtGKTtla~~lA~~l---~~~---~~rV~~~~~l~~~Dli 107 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD---RRVMVQGYHGTGKSTHIEQIAARL---NWP---CVRVNLDSHVSRIDLV 107 (327)
T ss_pred ccCCHHHHHHHHHHHhcC---CcEEEEeCCCChHHHHHHHHHHHH---CCC---eEEEEecCCCChhhcC
Confidence 344444556677777544 569999999999999999999987 122 2345555554444443
No 476
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.12 E-value=0.12 Score=51.93 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 002569 183 IIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.|.|+|++|+||||+|+.++...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 477
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.12 E-value=0.13 Score=55.14 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=38.9
Q ss_pred CcccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 159 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 159 ~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+.+||-++.+..+...+.+. ...-|.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p-~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDP-KIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCC-CCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 35899998888887777765 67778899999999999999998766
No 478
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.09 E-value=0.16 Score=49.68 Aligned_cols=43 Identities=21% Similarity=0.233 Sum_probs=32.0
Q ss_pred cccchhHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 160 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 160 ~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+++|.+..+..+.-...+. .-+.++|.+|+|||++|+.+..-+
T Consensus 4 dI~GQe~aKrAL~iAAaG~---h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAAGG---HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CSSSTHHHHHHHHHHHHCC-----EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhcCcHHHHHHHHHHHcCC---CCeEEECCCCCCHHHHHHHHHHhC
Confidence 5788887777765555543 689999999999999999998765
No 479
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.07 E-value=0.088 Score=52.64 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
...+|+|+|+.|+|||||++.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998876
No 480
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.05 E-value=0.078 Score=50.70 Aligned_cols=22 Identities=45% Similarity=0.623 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 002569 184 IGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~ 205 (906)
|.|.|..|+||||+++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999887
No 481
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.03 E-value=0.074 Score=51.89 Aligned_cols=24 Identities=33% Similarity=0.438 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 182 GIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
++|+|+|+.|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998865
No 482
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.01 E-value=0.35 Score=53.50 Aligned_cols=90 Identities=23% Similarity=0.315 Sum_probs=51.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCc-ccHHHHHHHHHHHhCCCCC-----ccccCCHHH--
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKD-LQLEKIQETIGKKIGLYTD-----SWKDRSLEE-- 251 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~-----~~~~~~~~~-- 251 (906)
.-..++|+|..|+|||||++.+.... ..+.+++..+... .+..++...+...-++... ..++.....
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 45789999999999999999887653 2234444444433 3455655555554332110 001111111
Q ss_pred ---HHHHHHHHh--ccCcEEEEEccccc
Q 002569 252 ---KAQDIFKTL--SKKKFVLLLDDLWE 274 (906)
Q Consensus 252 ---~~~~l~~~l--~~kr~LlVlDdv~~ 274 (906)
.+..+.+++ +++++|+++||+-.
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 112233333 57899999999854
No 483
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=92.99 E-value=1.2 Score=47.70 Aligned_cols=57 Identities=11% Similarity=-0.047 Sum_probs=34.6
Q ss_pred cceEEeccCChHhHHHHHHHHhccccccCCCCchHHHHHHHHHhCCChHHHHHHHHH
Q 002569 307 RRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIGRA 363 (906)
Q Consensus 307 ~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~G~Plai~~~~~~ 363 (906)
..+++++..+.+|+..+..-+....-......-++--+++.-..+|+|--+..++..
T Consensus 403 f~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lca~ 459 (461)
T KOG3928|consen 403 FVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLCAF 459 (461)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHHHh
Confidence 456889999999998887766543221101111445566777778888555544443
No 484
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.99 E-value=1.2 Score=50.82 Aligned_cols=46 Identities=24% Similarity=0.266 Sum_probs=35.3
Q ss_pred cccchhHHHHHH---HHHHhcC--------CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 160 TVVGLQSQLEQV---WRCLVQE--------PAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 160 ~~vgr~~~~~~l---~~~L~~~--------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
++-|.++.++++ ++.|.+. .-++-|..+|++|.|||.||++++...
T Consensus 151 DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA 207 (596)
T COG0465 151 DVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 207 (596)
T ss_pred hhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc
Confidence 467887766655 5555543 125678999999999999999999987
No 485
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.97 E-value=0.097 Score=51.49 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
+..+|.|.|.+|+||||+|+.++...
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998886
No 486
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.96 E-value=0.48 Score=55.87 Aligned_cols=88 Identities=19% Similarity=0.301 Sum_probs=50.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCc-ccHHHHHHHHHHHhCCCCCccccCCHHHHHHHHHHH
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKD-LQLEKIQETIGKKIGLYTDSWKDRSLEEKAQDIFKT 259 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 259 (906)
.++|+++|+.|+||||.+..++..+. .......+..++.... ....+-++...+.++++.. ...+..++...+. .
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~-~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al~-~ 260 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV-AREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH--AVKDAADLRFALA-A 260 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH-HHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHH-H
Confidence 47999999999999999999887662 1112234555554321 1244555566666665432 2234445444443 3
Q ss_pred hccCcEEEEEcccc
Q 002569 260 LSKKKFVLLLDDLW 273 (906)
Q Consensus 260 l~~kr~LlVlDdv~ 273 (906)
++++ =+|++|-.-
T Consensus 261 ~~~~-D~VLIDTAG 273 (767)
T PRK14723 261 LGDK-HLVLIDTVG 273 (767)
T ss_pred hcCC-CEEEEeCCC
Confidence 3333 366667654
No 487
>PHA02774 E1; Provisional
Probab=92.96 E-value=0.25 Score=55.73 Aligned_cols=50 Identities=18% Similarity=0.190 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEe
Q 002569 166 SQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVV 220 (906)
Q Consensus 166 ~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 220 (906)
.-...+..++...++...+.|+|++|.|||.+|..+.+-. ....+.||+.
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L-----~G~vi~fvN~ 468 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFL-----KGKVISFVNS 468 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEEEC
Confidence 3445556666554566799999999999999999999886 1334566664
No 488
>PHA02244 ATPase-like protein
Probab=92.96 E-value=0.22 Score=53.22 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=29.8
Q ss_pred cccchhHHH----HHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 160 TVVGLQSQL----EQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 160 ~~vgr~~~~----~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.++|..... ..+..++..+ .-|.++|+.|+|||++|++++...
T Consensus 97 ~~ig~sp~~~~~~~ri~r~l~~~---~PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 97 TKIASNPTFHYETADIAKIVNAN---IPVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred cccCCCHHHHHHHHHHHHHHhcC---CCEEEECCCCCCHHHHHHHHHHHh
Confidence 356644433 3444444433 346789999999999999999886
No 489
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=92.94 E-value=0.79 Score=54.85 Aligned_cols=130 Identities=18% Similarity=0.201 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHhcCCCCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCCcccHHHHHHHHHHHhCCCCCc-
Q 002569 165 QSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSKDLQLEKIQETIGKKIGLYTDS- 243 (906)
Q Consensus 165 ~~~~~~l~~~L~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~- 243 (906)
...+++|++.+... .|+.|.|..|.||||-.-+.+-+.- -.....+-+.=.+......+...++++++...+.
T Consensus 52 ~~~~~~i~~ai~~~---~vvii~getGsGKTTqlP~~lle~g---~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~ 125 (845)
T COG1643 52 TAVRDEILKAIEQN---QVVIIVGETGSGKTTQLPQFLLEEG---LGIAGKIGCTQPRRLAARSVAERVAEELGEKLGET 125 (845)
T ss_pred HHHHHHHHHHHHhC---CEEEEeCCCCCChHHHHHHHHHhhh---cccCCeEEecCchHHHHHHHHHHHHHHhCCCcCce
Confidence 45677888888755 8999999999999999988877751 1223344444444455677788888888754221
Q ss_pred ------c----------ccCCHHHHHHHHHH-HhccCcEEEEEccccchhh--------hhhcCCcCCCCcEEEEEeccc
Q 002569 244 ------W----------KDRSLEEKAQDIFK-TLSKKKFVLLLDDLWERVD--------LKKVGVPLPKNSAVVFTTRFV 298 (906)
Q Consensus 244 ------~----------~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~--------~~~~~~~~~~gs~iivTtR~~ 298 (906)
+ .-++...+.+.+.. .+=.+=-.||+|.+.+..- +..+....++.-||||+|=.-
T Consensus 126 VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATl 205 (845)
T COG1643 126 VGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATL 205 (845)
T ss_pred eeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence 0 11223333333331 2222334789999976421 222223333358999988654
Q ss_pred cc
Q 002569 299 DV 300 (906)
Q Consensus 299 ~v 300 (906)
+.
T Consensus 206 d~ 207 (845)
T COG1643 206 DA 207 (845)
T ss_pred CH
Confidence 33
No 490
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.92 E-value=0.097 Score=50.48 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 181 AGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
...|.|+|+.|.||||+++.+....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 4579999999999999999999876
No 491
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.91 E-value=0.084 Score=52.60 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.-.+|+|+|++|+|||||.+.++.-.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55799999999999999999998754
No 492
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.89 E-value=0.11 Score=45.07 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQIN 202 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~ 202 (906)
.-..++|+|+.|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34789999999999999999875
No 493
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=92.88 E-value=0.13 Score=52.45 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=22.5
Q ss_pred EEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEe
Q 002569 186 LYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVV 220 (906)
Q Consensus 186 I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 220 (906)
|+|++|+||||+++.+.+... .....++.|+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~---~~~~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE---SNGRDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT---TT-S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHH---hccCCceEEEc
Confidence 789999999999999999882 33344555553
No 494
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=92.85 E-value=0.13 Score=54.62 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.-.++.|+|.+|.||||+.+.+....
T Consensus 408 pGdvvaVvGqSGaGKttllRmi~G~~ 433 (593)
T COG2401 408 PGDVVAVVGQSGAGKTTLLRMILGAQ 433 (593)
T ss_pred CCCeEEEEecCCCCcchHHHHHHHHh
Confidence 35789999999999999999998765
No 495
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.84 E-value=0.087 Score=49.81 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 002569 184 IGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~ 205 (906)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 496
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=92.79 E-value=0.39 Score=53.03 Aligned_cols=90 Identities=22% Similarity=0.268 Sum_probs=48.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEeCC-cccHHHHHHHHHHHhCCCC--------Cc--cccCC
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDSVIWVVVSK-DLQLEKIQETIGKKIGLYT--------DS--WKDRS 248 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~--------~~--~~~~~ 248 (906)
+-..++|+|..|+|||||++.+.... ..+..+...+.. ..+..++..+.+..-+... +. .....
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~-----~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~ 228 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYT-----QADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIK 228 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhccc-----CCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHH
Confidence 56789999999999999999887754 123332232322 2233343334333322210 00 01111
Q ss_pred HHHHHHHHHHHh--ccCcEEEEEccccc
Q 002569 249 LEEKAQDIFKTL--SKKKFVLLLDDLWE 274 (906)
Q Consensus 249 ~~~~~~~l~~~l--~~kr~LlVlDdv~~ 274 (906)
..+.+..+.+++ +++.+|+++||+-.
T Consensus 229 a~e~a~~iAEyfr~~g~~Vll~~Dsltr 256 (434)
T PRK07196 229 ATELCHAIATYYRDKGHDVLLLVDSLTR 256 (434)
T ss_pred HHHHHHHHHHHhhhccCCEEEeecchhH
Confidence 222233333333 47899999999854
No 497
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=92.77 E-value=0.14 Score=51.35 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 002569 184 IGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~ 205 (906)
|.|.|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998775
No 498
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.76 E-value=0.077 Score=50.80 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 002569 184 IGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~ 205 (906)
|.|+|+.|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998876
No 499
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.76 E-value=0.68 Score=54.87 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 002569 180 AAGIIGLYGMGGVGKTTLLTQINNKF 205 (906)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (906)
.-..|+|+|..|+|||||+|.+..-.
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999997765
No 500
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.76 E-value=0.019 Score=54.67 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=37.2
Q ss_pred hhhcCCCccEEeeecCcchHHHhhcCCCCCcCcccCcCCCcCCCccEEecCCccccccccCC-CCCCCCccEEeecCCCC
Q 002569 771 FLVFAPNLKSISVRYCNDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLERLRNLKSIYWK-PLPLPRLKELEFRGCDS 849 (906)
Q Consensus 771 ~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~~ 849 (906)
.+..++.++.|.+.+|..+.+-... ...+.+|+|+.|+|++|+++++.... ...+++|+.|.|++.+.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~-----------~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLE-----------RLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred HHhccchhhhheeccccchhhHHHH-----------HhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 3445566666666666665554321 12225666666666666665554321 23356666666665544
Q ss_pred CC
Q 002569 850 LK 851 (906)
Q Consensus 850 L~ 851 (906)
..
T Consensus 189 v~ 190 (221)
T KOG3864|consen 189 VA 190 (221)
T ss_pred hh
Confidence 33
Done!