Query 002569
Match_columns 906
No_of_seqs 400 out of 4638
Neff 9.8
Searched_HMMs 29240
Date Tue Mar 26 16:51:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002569.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1286-1289//hhsearch_pdb/002569hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 397.2 18.7 315 156-489 125-470 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 356.4 25.5 313 156-489 121-451 (1249)
3 1vt4_I APAF-1 related killer D 1.0 1 1 333.3 17.1 288 158-483 127-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 1.0 1 1 303.7 25.2 307 157-487 122-449 (591)
5 4ecn_A Leucine-rich repeat pro 1.0 1 1 225.3 13.8 333 504-871 436-838 (876)
6 4eco_A Uncharacterized protein 1.0 1 1 218.9 13.1 330 508-871 198-598 (636)
7 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 216.1 21.4 149 496-648 14-167 (606)
8 3rgz_A Protein brassinosteroid 1.0 1 1 213.6 14.4 231 661-904 435-738 (768)
9 3rgz_A Protein brassinosteroid 1.0 1 1 212.5 18.0 37 811-847 678-714 (768)
10 1ziw_A TOLL-like receptor 3; i 1.0 1 1 211.7 19.4 153 517-680 249-417 (680)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=397.19 Aligned_cols=315 Identities=14% Similarity=0.153 Sum_probs=256.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCC--CCCEEEEEECCCCCCHHHHHHHHHH--HCCCCCCCCCEEEEEEECCCC--CHHHH
Q ss_conf 99995102168899999997139--9970999991899819999999998--304699999889999938843--69999
Q 002569 156 PTEPTVVGLQSQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINN--KFVDNPTDFDSVIWVVVSKDL--QLEKI 229 (906)
Q Consensus 156 ~~~~~~vgr~~~~~~l~~~L~~~--~~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~~f~~~~wv~~~~~~--~~~~l 229 (906)
|..+..+||+.++++|.++|..+ +..++|+|+||||+||||||+++|+ +. +++.+|+.++|+++++.. +...+
T Consensus 125 p~~~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~ 203 (549)
T 2a5y_B 125 PKQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDL 203 (549)
T ss_dssp BCCCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-HHHCCCCCEEEEEECCCCCCCHHHH
T ss_conf 997760784179999999872515789628999869999889999999984069-8746699579999789878799999
Q ss_pred HHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHCCC-CEEEEECCCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCC
Q ss_conf 9999988099988-----666679999999999983149-4899986545633352407868999499999023321247
Q 002569 230 QETIGKKIGLYTD-----SWKDRSLEEKAQDIFKTLSKK-KFVLLLDDLWERVDLKKVGVPLPKNSAVVFTTRFVDVCGG 303 (906)
Q Consensus 230 ~~~i~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~~~~~~~s~iiiTtR~~~v~~~ 303 (906)
+..|+.+++.... .....+...+...+.+.+.++ |+||||||||+..++ .+. ...||+||||||+..++..
T Consensus 204 ~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~--~~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 204 FTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA--QELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH--HHTTCEEEEEESBGGGGGG
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-CCC--CCCCCEEEEECCCHHHHHH
T ss_conf 9999999853755345555331469999999999976898489999799971441-543--2699889997497799997
Q ss_pred CC-CCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 87-43328724599686999999872664436899914899999999199717999999885049998899999999952
Q 002569 304 ME-ARRKFKVECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIGRAMAYKKTPEEWRYAIEVLRR 382 (906)
Q Consensus 304 ~~-~~~~~~l~~L~~~e~~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~l~~l~~ 382 (906)
++ ...+|+|++|+.+++|+||.+.++... .++.+++++.+|+++|+|+|||++++|+.++.+ .|+.. +.+..
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~----~w~~~-~~l~~ 353 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK----TFEKM-AQLNN 353 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS----SHHHH-HHHHH
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC----HHHHH-HHHHH
T ss_conf 088973898999898999999998744899--855689999999999599839999999984434----48999-87578
Q ss_pred HHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH-----------HHCCCCCCCCCCHHHHHHHHHHC--CCCCCC--CCC
Q ss_conf 010017981225666776212899444665653-----------52269998533756599999860--986312--211
Q 002569 383 SASEFAGLGKEVYPLLKFSYDCLPSDAIRSCFL-----------YCCLYPEDYGIDKRDLIDCWMCE--GFLEED--KFG 447 (906)
Q Consensus 383 ~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~c~l-----------~~~~fp~~~~i~~~~lv~~w~~e--g~i~~~--~~~ 447 (906)
..+... ...+..++.+||++||. ++|.||+ |||+||+++.|+ +++|+|+ ||+... ...
T Consensus 354 ~l~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~ 426 (549)
T 2a5y_B 354 KLESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQL 426 (549)
T ss_dssp HHHHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCC
T ss_pred HHHCCC--HHHHHHHHHCCCCCCCH-HHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCCCC
T ss_conf 761364--77789897516202267-999997526522336743235608997666----53311013550026778999
Q ss_pred CCHHHHHHHHHHHHHHCCCCC---CCCEEEEEEEEECHHHHHHHH
Q ss_conf 110168899889883100101---599199861010024676764
Q 002569 448 TQNRGYYIVGTLVHACLLEEV---EDDQVKMHDVVRDMALWITCE 489 (906)
Q Consensus 448 ~~~~~~~~~~~L~~~~ll~~~---~~~~~~mH~li~~~~~~~~~~ 489 (906)
.++.++ ++++|+++||+++. ...+|+|||+||+||++++.+
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~ 470 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDA 470 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCT
T ss_pred HHHHHH-HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 999999-99999875883671479804999676999999999889
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=356.39 Aligned_cols=313 Identities=20% Similarity=0.262 Sum_probs=254.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCC-CCCEEEEEEECCCC--CHHHHHH
Q ss_conf 9999510216889999999713-999709999918998199999999983046999-99889999938843--6999999
Q 002569 156 PTEPTVVGLQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT-DFDSVIWVVVSKDL--QLEKIQE 231 (906)
Q Consensus 156 ~~~~~~vgr~~~~~~l~~~L~~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~~~~~--~~~~l~~ 231 (906)
+..+.|+||++++++|.++|.. ++..++|+|+||||+||||||++++++...... .++.++|++++... .....+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CCCCEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 99864125799999999998613588777999918988888999998607567886278817999978857267999999
Q ss_pred HHHHHHCCCCC--CCCCCCHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCC-CCC
Q ss_conf 99988099988--666679999999999983149--4899986545633352407868999499999023321247-874
Q 002569 232 TIGKKIGLYTD--SWKDRSLEEKAQDIFKTLSKK--KFVLLLDDLWERVDLKKVGVPLPKNSAVVFTTRFVDVCGG-MEA 306 (906)
Q Consensus 232 ~i~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~~~~~~~s~iiiTtR~~~v~~~-~~~ 306 (906)
.++..+..... .....+.+++...++..+.++ |+||||||+|+..+|..+ +.|++||+|||+..++.. +..
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~----~~~~~ilvTtR~~~~~~~~~~~ 276 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF----DNQCQILLTTRDKSVTDSVMGP 276 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT----CSSCEEEEEESSTTTTTTCCSC
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH----CCCCEEEEECCCHHHHHHHCCC
T ss_conf 999986553033347887778999999999735678789999567997788763----6897899992778998763488
Q ss_pred CCEEEECC-CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 33287245-99686999999872664436899914899999999199717999999885049998899999999952010
Q 002569 307 RRKFKVEC-LSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIGRAMAYKKTPEEWRYAIEVLRRSAS 385 (906)
Q Consensus 307 ~~~~~l~~-L~~~e~~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~~~ 385 (906)
...+.+.+ |+++|+++||...++... +..++.+++|+++|+|+||||+.+|++++.+. ..|+..++.+....+
T Consensus 277 ~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 277 KHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQF 350 (1249)
T ss_dssp BCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCC
T ss_pred CEEEEECCCCCHHHHHHHHHHHHCCCH----HHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHH
T ss_conf 437982588887889999998657981----34838899999984997799999999862480--579999999865044
Q ss_pred CCC-----CCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 017-----981225666776212899444665653522699985337565999998609863122111101688998898
Q 002569 386 EFA-----GLGKEVYPLLKFSYDCLPSDAIRSCFLYCCLYPEDYGIDKRDLIDCWMCEGFLEEDKFGTQNRGYYIVGTLV 460 (906)
Q Consensus 386 ~~~-----~~~~~~~~~l~~sy~~L~~~~~k~c~l~~~~fp~~~~i~~~~lv~~w~~eg~i~~~~~~~~~~~~~~~~~L~ 460 (906)
... ...+.+..++.+||+.|++ +.|.||+||++||+++.|++..++.+|.++ ++.++.++++|+
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~----------~~~~~~~l~~L~ 419 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE----------TEEVEDILQEFV 419 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC----------HHHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHCCH-HHHHHHHHHCCCCCCCEECHHHHHHHHCCC----------HHHHHHHHHHHH
T ss_conf 303465564467799999989986799-999999972813799751899999885898----------889999999997
Q ss_pred HHHCCCCCCCC---EEEEEEEEECHHHHHHHH
Q ss_conf 83100101599---199861010024676764
Q 002569 461 HACLLEEVEDD---QVKMHDVVRDMALWITCE 489 (906)
Q Consensus 461 ~~~ll~~~~~~---~~~mH~li~~~~~~~~~~ 489 (906)
++||++....+ +|+||++||+|++..+.+
T Consensus 420 ~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 420 NKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred HCCCEEEECCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 44633896379811899668999998745067
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=333.29 Aligned_cols=288 Identities=15% Similarity=0.189 Sum_probs=230.8
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCE-EEEEEECCCCCHHHHHHHHHHH
Q ss_conf 995102168899999997139997099999189981999999999830469999988-9999938843699999999988
Q 002569 158 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDS-VIWVVVSKDLQLEKIQETIGKK 236 (906)
Q Consensus 158 ~~~~vgr~~~~~~l~~~L~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~~~~~~~l~~~i~~~ 236 (906)
.+..+||+.++++|.++|...+..++|+|+||||+||||||+++|++. ++..+|+. ++|++++..++...++..+...
T Consensus 127 tk~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp CCSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH-HHHHHCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 787789289999999997435897189997699966799999999714-9887489938999828999999999999999
Q ss_pred HCCCC---C-CC-----CCCCHHHHHHHHHHHH---CCCCEEEEECCCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 09998---8-66-----6679999999999983---14948999865456333524078689994999990233212478
Q 002569 237 IGLYT---D-SW-----KDRSLEEKAQDIFKTL---SKKKFVLLLDDLWERVDLKKVGVPLPKNSAVVFTTRFVDVCGGM 304 (906)
Q Consensus 237 l~~~~---~-~~-----~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~~~~~~~~s~iiiTtR~~~v~~~~ 304 (906)
++... . .. ...+.++....+.+.+ .++|+||||||||+...|..+. .||+||||||+..++..+
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~----pGSRILVTTRd~~Va~~l 281 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN----LSCKILLTTRFKQVTDFL 281 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH----SSCCEEEECSCSHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHC----CCEEEEEECCCHHHHHHC
T ss_conf 8622721022001346799999999999999998504788799871868189998647----982999944373799866
Q ss_pred CCCCEEEEC------CCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CHHHHHHHH
Q ss_conf 743328724------5996869999998726644368999148999999991997179999998850499-988999999
Q 002569 305 EARRKFKVE------CLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIGRAMAYKK-TPEEWRYAI 377 (906)
Q Consensus 305 ~~~~~~~l~------~L~~~e~~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~-~~~~w~~~l 377 (906)
.....|.++ +|+.+|+|+||.+..+.. ..++..+| |+|+||||+++|+.++.+. +...|...
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC-------HHHHHHHH---HCCCHHHHHHHHHHHHCCCCCHHHHHCC-
T ss_conf 897089946865568969999999999974998-------89999999---6989999999999984889979998669-
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 999520100179812256667762128994446-6565352269998533756599999860986312211110168899
Q 002569 378 EVLRRSASEFAGLGKEVYPLLKFSYDCLPSDAI-RSCFLYCCLYPEDYGIDKRDLIDCWMCEGFLEEDKFGTQNRGYYIV 456 (906)
Q Consensus 378 ~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~c~l~~~~fp~~~~i~~~~lv~~w~~eg~i~~~~~~~~~~~~~~~ 456 (906)
....+..++..||+.|++ +. |+||+|||+||+++.|+.+.++.+|+++| ++.++.++
T Consensus 351 ------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG---------eedAe~~L 408 (1221)
T 1vt4_I 351 ------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---------KSDVMVVV 408 (1221)
T ss_dssp ------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC---------SHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHHHCCH-HHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC---------HHHHHHHH
T ss_conf ------------861899999999984889-99999999971779999877999998766778---------89999999
Q ss_pred HHHHHHHCCCCC-CCCEEEEEEEEECHH
Q ss_conf 889883100101-599199861010024
Q 002569 457 GTLVHACLLEEV-EDDQVKMHDVVRDMA 483 (906)
Q Consensus 457 ~~L~~~~ll~~~-~~~~~~mH~li~~~~ 483 (906)
++|+++||++.. ...+|+|||++++++
T Consensus 409 ~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 409 NKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHCCEEEECCCCEEEEHHHHHHHH
T ss_conf 9999619889868999898609999985
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=303.65 Aligned_cols=307 Identities=20% Similarity=0.278 Sum_probs=238.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHHHHHHCCCC-CCCC-CEEEEEEECCCCCHHHHHHH-
Q ss_conf 9995102168899999997139-997099999189981999999999830469-9999-88999993884369999999-
Q 002569 157 TEPTVVGLQSQLEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDN-PTDF-DSVIWVVVSKDLQLEKIQET- 232 (906)
Q Consensus 157 ~~~~~vgr~~~~~~l~~~L~~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~~f-~~~~wv~~~~~~~~~~l~~~- 232 (906)
..+.||||+.++++|.+++... +..++|+|+|+||+||||||.+++++. +. ..+| +.++|++++.. +...+...
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred CCCEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCH-HHHHHHCCCCEEEEECCCC-CHHHHHHHH
T ss_conf 98714052999999999986036888469997699898899999998355-6888528996599977877-668899999
Q ss_pred --HHHHHCCCC--CCCCCCCHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf --998809998--866667999999999998314--94899986545633352407868999499999023321247874
Q 002569 233 --IGKKIGLYT--DSWKDRSLEEKAQDIFKTLSK--KKFVLLLDDLWERVDLKKVGVPLPKNSAVVFTTRFVDVCGGMEA 306 (906)
Q Consensus 233 --i~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~~~~~~~s~iiiTtR~~~v~~~~~~ 306 (906)
+...++... ......+.+.....+...+.+ +++||||||+|+...+..+ +.+++||+|||+..++..+.
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l----~~~~~ilvTsR~~~~~~~~~- 274 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF----DSQCQILLTTRDKSVTDSVM- 274 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT----CSSCEEEEEESCGGGGTTCC-
T ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHH----CCCCEEEEECCCCHHHHHCC-
T ss_conf 9999985035565567998899999999999706799869998589987999876----37986999898817777348-
Q ss_pred CCEEEE---CCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 332872---45996869999998726644368999148999999991997179999998850499988999999999520
Q 002569 307 RRKFKV---ECLSDEDAWELFREKVGEETIESHHSIPELAQTVANECGGLPLALITIGRAMAYKKTPEEWRYAIEVLRRS 383 (906)
Q Consensus 307 ~~~~~l---~~L~~~e~~~lf~~~a~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~l~~~~~~~~w~~~l~~l~~~ 383 (906)
...+++ ++|+.+|+++||...++... ....+.+.+|+++|+|+|+|+..+|+.++.+. ..|...++.+...
T Consensus 275 ~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~ 348 (591)
T 1z6t_A 275 GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNK 348 (591)
T ss_dssp SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCC----CCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC--HHHHHHHHHHHHH
T ss_conf 98268615889998999999998718983----10459999999995898379999999984484--3599999999886
Q ss_pred HHCC-----CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 1001-----79812256667762128994446656535226999853375659999986098631221111016889988
Q 002569 384 ASEF-----AGLGKEVYPLLKFSYDCLPSDAIRSCFLYCCLYPEDYGIDKRDLIDCWMCEGFLEEDKFGTQNRGYYIVGT 458 (906)
Q Consensus 384 ~~~~-----~~~~~~~~~~l~~sy~~L~~~~~k~c~l~~~~fp~~~~i~~~~lv~~w~~eg~i~~~~~~~~~~~~~~~~~ 458 (906)
.... ......+..++..||+.|++ +.|.||+++|+||+++.|+...+..+|.++ .+.+..++++
T Consensus 349 ~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~----------~~~~~~~l~~ 417 (591)
T 1z6t_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME----------TEEVEDILQE 417 (591)
T ss_dssp CCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC----------HHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHCCH-HHHHHHHHCCCCCCCCCCCHHHHHHHHCCC----------HHHHHHHHHH
T ss_conf 89876511465437899999999986899-999999974556799850899999996658----------8999999999
Q ss_pred HHHHHCCCCCC---CCEEEEEEEEECHHHHHH
Q ss_conf 98831001015---991998610100246767
Q 002569 459 LVHACLLEEVE---DDQVKMHDVVRDMALWIT 487 (906)
Q Consensus 459 L~~~~ll~~~~---~~~~~mH~li~~~~~~~~ 487 (906)
|++++|++... ..+|+||+++|+++....
T Consensus 418 L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 418 FVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHCCCEEEECCCCCCEEEECHHHHHHHHHHH
T ss_conf 98595868854898567997689999998653
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=225.25 Aligned_cols=333 Identities=14% Similarity=0.138 Sum_probs=207.9
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCC------------------CC-CCC--CCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 952168775462123687203568878------------------99-989--999722999332788654441117788
Q 002569 504 GLTEAPADVRGWEIVRRLSLMRNSIDN------------------LP-TVP--TCPHLLTLFLNRNPLRTITGGFFQSMS 562 (906)
Q Consensus 504 ~~~~~~~~~~~~~~lr~L~l~~~~~~~------------------l~-~~~--~~~~Lr~L~l~~~~l~~~~~~~~~~l~ 562 (906)
.+..+|..+..+++++.|++++|.+.. +| .+. .+++|+.|++++|.+....+..+.+++
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~ 515 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS
T ss_pred CCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCC
T ss_conf 61521188756999878979688678874653223322222244587444025599977898718988752738773799
Q ss_pred CEEEEECCCCCCCC--CCCCCCCCCC-------CCCEEECCCCCCCCCCH--HHHCCCCCCEECCCCCCCCCCCCHHHHC
Q ss_conf 20099825753323--2360112543-------46553115674433482--2217998957323243343211700104
Q 002569 563 CLTVLKMSDNETLR--QLPMGISKLV-------SLQLLDISKTSVVELPE--ELKALVNLKCLNLDWAKELVVVPQQLLS 631 (906)
Q Consensus 563 ~L~~L~L~~~~~i~--~lp~~~~~L~-------~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~~i~ 631 (906)
+|++|+|++|..++ .+|..++.+. +|++|++++|.+..+|. .++++++|+.|++++| .+..+| . ++
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~-~~ 592 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-A-FG 592 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-C-CC
T ss_pred CCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCEEECCCC-CCCCCH-H-HC
T ss_conf 98999896898765664617787523301556883199822894776187235515898898989799-825621-2-24
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCC-CCEEEEEEECHHHHHHHHHCCCCCCCCEEEEECCCCCCCC-
Q ss_conf 89778566612024458888888533130776309988-6289999713022898750011123541567265688763-
Q 002569 632 NFSRLRVLRMFAIGVRSPYGLSSSWHENVAEELLGLKY-LEVLEITFRSFKAYQTFLSSQKLRSCTQALLLDEFDREES- 709 (906)
Q Consensus 632 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~- 709 (906)
.+++|+.|++.+|.+. ..+..+..+++ |+.|+++.|.+..++..+.... ...|+.|.+++|.....
T Consensus 593 ~L~~L~~L~Ls~N~l~-----------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~-~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIE-----------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS-VYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp TTSEESEEECCSSCCS-----------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTC-SSCEEEEECCSSCTTTTS
T ss_pred CCCCCEEEECCCCCCC-----------CCHHHHHHCCCCCCEEECCCCCCCCCCHHHHCCC-CCCCCEEECCCCCCCCCC
T ss_conf 7985007987187125-----------0358775251149899984997874764452255-677788977088478864
Q ss_pred ---------------------------CCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf ---------------------------33244236678867784179999951540234535677863489878897832
Q 002569 710 ---------------------------IDVADLADLEQLNTLSFVGCDWPGGLRIDYKDMVQKSRQPYVFRSLEEVTVDS 762 (906)
Q Consensus 710 ---------------------------~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 762 (906)
++...+..+++|+.|++++|... .++...... .......+++|+.|++++
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~--~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKP--KDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSC--TTSCCTTGGGCCEEECCS
T ss_pred CCCHHHHCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCC--CCCCCCCCCCCCEEECCC
T ss_conf 32000000135797688983199688659788713898899989899688-549678455--533432148715898889
Q ss_pred CCCCCCCHH-HH--CCCCCCEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCC------CCCCCCCCC
Q ss_conf 888887600-00--389955784604801489861498888676557678767776587257765------554235798
Q 002569 763 CRNLKHLTF-LV--FAPNLKSISVRYCNDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLERLR------NLKSIYWKP 833 (906)
Q Consensus 763 ~~~l~~l~~-l~--~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~------~l~~~~~~~ 833 (906)
| .++.+|. +. .+++|+.|+|++|. ++.+ + .....+++|+.|.+.+++ -...++...
T Consensus 738 N-~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~l---------p----~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l 802 (876)
T 4ecn_A 738 N-KLTSLSDDFRATTLPYLSNMDVSYNC-FSSF---------P----TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802 (876)
T ss_dssp S-CCCCCCGGGSTTTCTTCCEEECCSSC-CSSC---------C----CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred C-CCCCCHHHHHHCCCCCCCEEEECCCC-CCCC---------C----HHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHH
T ss_conf 9-78665277624427986989908997-8761---------0----566159998899887997766563244486888
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 89998458856389888886799999998426998330
Q 002569 834 LPLPRLKELEFRGCDSLKKLPLDSNSANGRRILIRGGE 871 (906)
Q Consensus 834 ~~~~~L~~L~i~~c~~L~~Lp~~~n~~~l~~~~i~~~~ 871 (906)
..+++|+.|++++|. +..+|.... .+++.+++.+|.
T Consensus 803 ~~L~~L~~L~Ls~N~-L~~Ip~~l~-~~L~~LdLs~N~ 838 (876)
T 4ecn_A 803 TTCPSLIQLQIGSND-IRKVDEKLT-PQLYILDIADNP 838 (876)
T ss_dssp GGCSSCCEEECCSSC-CCBCCSCCC-SSSCEEECCSCT
T ss_pred HCCCCCCEEECCCCC-CCCCCHHHC-CCCCEEECCCCC
T ss_conf 369987889887997-874087662-877889997998
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=218.89 Aligned_cols=330 Identities=13% Similarity=0.143 Sum_probs=169.7
Q ss_pred CCCCCCCCEEEEEEECCCCCCCC------------------CC-CCC--CCCCCEEEEEECCCCCCCCCCCCCCCCCEEE
Q ss_conf 68775462123687203568878------------------99-989--9997229993327886544411177882009
Q 002569 508 APADVRGWEIVRRLSLMRNSIDN------------------LP-TVP--TCPHLLTLFLNRNPLRTITGGFFQSMSCLTV 566 (906)
Q Consensus 508 ~~~~~~~~~~lr~L~l~~~~~~~------------------l~-~~~--~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~ 566 (906)
+|..+..+++++.|++++|.+.. +| .+. .+++|++|++++|.+....+..+.++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCE
T ss_conf 78777256478789886882366423221222221001024863220044687888980488577628388834999788
Q ss_pred EECCCCCCCC--CCCCCCCCC------CCCCEEECCCCCCCCCCH--HHHCCCCCCEECCCCCCCCCCCCHHHHCCCCCC
Q ss_conf 9825753323--236011254------346553115674433482--221799895732324334321170010489778
Q 002569 567 LKMSDNETLR--QLPMGISKL------VSLQLLDISKTSVVELPE--ELKALVNLKCLNLDWAKELVVVPQQLLSNFSRL 636 (906)
Q Consensus 567 L~L~~~~~i~--~lp~~~~~L------~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~~~~lp~~~i~~l~~L 636 (906)
|++++|..++ .+|..++.+ ++|++|++++|.+..+|. .++++++|++|++++|...+.+| . +..+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEE
T ss_pred EECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCHH-H-HCCCCCC
T ss_conf 9784798876653357887543046578888898979937766765554257888989690880705166-6-4788988
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCC-CCEEEEEEECHHHHHHHHHCC-----------------------C-
Q ss_conf 566612024458888888533130776309988-628999971302289875001-----------------------1-
Q 002569 637 RVLRMFAIGVRSPYGLSSSWHENVAEELLGLKY-LEVLEITFRSFKAYQTFLSSQ-----------------------K- 691 (906)
Q Consensus 637 ~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~-----------------------~- 691 (906)
+.|++.+|.+. ..+..+..+++ |+.|+++.|.+..++..+... .
T Consensus 356 ~~L~L~~N~l~-----------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 424 (636)
T 4eco_A 356 ASLNLAYNQIT-----------EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424 (636)
T ss_dssp SEEECCSSEEE-----------ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred CEEECCCCCCC-----------CCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCC
T ss_conf 98989899403-----------0337565102368689852982754466553334576688977488578865244200
Q ss_pred ------CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf ------12354156726568876333244236678867784179999951540234535677863489878897832888
Q 002569 692 ------LRSCTQALLLDEFDREESIDVADLADLEQLNTLSFVGCDWPGGLRIDYKDMVQKSRQPYVFRSLEEVTVDSCRN 765 (906)
Q Consensus 692 ------~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 765 (906)
...+|+.|.+.+|... .++...+..+++|+.|++++|... .++...... .......+++|+.|++++| .
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~--~~~~~~~l~~L~~L~Ls~N-~ 499 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKD--ENENFKNTYLLTSIDLRFN-K 499 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEE--TTEECTTGGGCCEEECCSS-C
T ss_pred CCCCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCC--CCCCCCCCCCCCEEECCCC-C
T ss_conf 2201125898888977279668-678788715898898989799788-739788404--4001221477338989699-3
Q ss_pred CCCCHH-HH--CCCCCCEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCC------CCCCCCCCCCCC
Q ss_conf 887600-00--389955784604801489861498888676557678767776587257765------554235798899
Q 002569 766 LKHLTF-LV--FAPNLKSISVRYCNDMEEIISAGEFDDIPEMTGIISSPFAKLQRLRLERLR------NLKSIYWKPLPL 836 (906)
Q Consensus 766 l~~l~~-l~--~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~------~l~~~~~~~~~~ 836 (906)
++.+|. +. .+++|+.|++++|. ++.++ .....+++|+.|.+.++. -...++.....+
T Consensus 500 l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip-------------~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l 565 (636)
T 4eco_A 500 LTKLSDDFRATTLPYLVGIDLSYNS-FSKFP-------------TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565 (636)
T ss_dssp CCBCCGGGSTTTCTTCCEEECCSSC-CSSCC-------------CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC
T ss_pred CCCCCHHHHHCCCCCCCEEECCCCC-CCCCC-------------HHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCC
T ss_conf 8816854534458876989898998-87768-------------235308887878898886656673121273778569
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 98458856389888886799999998426998330
Q 002569 837 PRLKELEFRGCDSLKKLPLDSNSANGRRILIRGGE 871 (906)
Q Consensus 837 ~~L~~L~i~~c~~L~~Lp~~~n~~~l~~~~i~~~~ 871 (906)
++|+.|++++|. ++.+|.... .+++.+++.++.
T Consensus 566 ~~L~~L~Ls~N~-l~~ip~~~~-~~L~~L~Ls~N~ 598 (636)
T 4eco_A 566 PSLTQLQIGSND-IRKVNEKIT-PNISVLDIKDNP 598 (636)
T ss_dssp SSCCEEECCSSC-CCBCCSCCC-TTCCEEECCSCT
T ss_pred CCCCEEECCCCC-CCCCCHHHH-CCCCEEECCCCC
T ss_conf 987889898994-770597683-867899876998
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=216.08 Aligned_cols=149 Identities=21% Similarity=0.254 Sum_probs=95.7
Q ss_pred CEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC--CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 4799839995216877546212368720356887899--98999972299933278865444111778820099825753
Q 002569 496 GFLVYAGSGLTEAPADVRGWEIVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNE 573 (906)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~ 573 (906)
..+...+.+++.+|..+. .++++|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n- 90 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN- 90 (606)
T ss_dssp TEEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-
T ss_pred CCEECCCCCCCCCCCCCC--CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCC-
T ss_conf 705746888451898888--87678878889757737545557766748868877366439777306010688678798-
Q ss_pred CCCCC-CCCCCCCCCCCEEECCCCCCCCCC-HHHHCCCCCCEECCCCCCCCC-CCCHHHHCCCCCCCEEECCCCCCCC
Q ss_conf 32323-601125434655311567443348-222179989573232433432-1170010489778566612024458
Q 002569 574 TLRQL-PMGISKLVSLQLLDISKTSVVELP-EELKALVNLKCLNLDWAKELV-VVPQQLLSNFSRLRVLRMFAIGVRS 648 (906)
Q Consensus 574 ~i~~l-p~~~~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~~~-~lp~~~i~~l~~L~~L~l~~~~~~~ 648 (906)
.++.+ |..++++++|++|++++|.+..+| ..++++++|++|++++|.... .+|.. ++++++|++|++.++.+..
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCE
T ss_pred CCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHH-HHHCCCCCEEECCCCCCEE
T ss_conf 5630485220786537888703775554451134898877989687885232530686-7326777788766885310
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=213.61 Aligned_cols=231 Identities=14% Similarity=0.031 Sum_probs=103.3
Q ss_pred HHHHCCCCCCCEEEEEEECHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEECC
Q ss_conf 77630998862899997130228987500111235415672656887633324423667886778417999995154023
Q 002569 661 AEELLGLKYLEVLEITFRSFKAYQTFLSSQKLRSCTQALLLDEFDREESIDVADLADLEQLNTLSFVGCDWPGGLRIDYK 740 (906)
Q Consensus 661 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~ 740 (906)
+..+..+++|+.|++..|.+.+.. .........|+.|.+.+|......+ ..+..+++|+.|++++|.....++ .+.
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p-~~~ 510 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEI--PQELMYVKTLETLILDFNDLTGEIP-SGLSNCTNLNWISLSNNRLTGEIP-KWI 510 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCCSCCC-GGG
T ss_pred CHHHHCCCCCCEEECCCCCCCCCC--CHHHCCCCCCEEEEECCCCCCCCCC-HHHHCCCCCCEEECCCCCCCCCCC-HHH
T ss_conf 677744998898989788154718--9788287773299901995137588-788169989989753995189687-688
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCH-HHHCCCCCCEEEEECCCCHHHHHHCCCCCC-C-----------------
Q ss_conf 453567786348987889783288888760-000389955784604801489861498888-6-----------------
Q 002569 741 DMVQKSRQPYVFRSLEEVTVDSCRNLKHLT-FLVFAPNLKSISVRYCNDMEEIISAGEFDD-I----------------- 801 (906)
Q Consensus 741 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~-~----------------- 801 (906)
..+++|+.|++++|.-...+| .+..+++|+.|++++|.....++...+... .
T Consensus 511 ---------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (768)
T 3rgz_A 511 ---------GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581 (768)
T ss_dssp ---------GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECC
T ss_pred ---------HCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCC
T ss_conf ---------56899998989789433748877708898998989888468827957860421223201345421111344
Q ss_pred ------------------------------------CCCCC---CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf ------------------------------------76557---678767776587257765554235798899984588
Q 002569 802 ------------------------------------PEMTG---IISSPFAKLQRLRLERLRNLKSIYWKPLPLPRLKEL 842 (906)
Q Consensus 802 ------------------------------------~~l~~---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 842 (906)
..+.| .....+++|+.|+++++.-...++...+.+++|+.|
T Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 661 (768)
T 3rgz_A 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661 (768)
T ss_dssp SCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEE
T ss_conf 43222233222100135563232002321100113310046274334033566579785880155587788414157878
Q ss_pred EECCC-------------CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHCC--CCCCCCCEEECCCC
Q ss_conf 56389-------------8888867999999984269983302222341075010201014--77554202122579
Q 002569 843 EFRGC-------------DSLKKLPLDSNSANGRRILIRGGEYWWRGLQWKDEATQNAFRL--CFQSLDELWLEGLS 904 (906)
Q Consensus 843 ~i~~c-------------~~L~~Lp~~~n~~~l~~~~i~~~~~~~~~l~~~~~~~~~~~~~--~~~~l~~~~l~~~~ 904 (906)
+++++ ++|+.|.+++|..++.....-+....++.|.+..|.+...++. .|..+....+.|+|
T Consensus 662 ~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCT
T ss_pred ECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCC
T ss_conf 48688038878967847778998989788023868867757887897879688155608996010248977756983
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=212.50 Aligned_cols=37 Identities=19% Similarity=0.098 Sum_probs=13.4
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 6777658725776555423579889998458856389
Q 002569 811 PFAKLQRLRLERLRNLKSIYWKPLPLPRLKELEFRGC 847 (906)
Q Consensus 811 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c 847 (906)
.+++|+.|+++++.--..++.....+++|+.|+++++
T Consensus 678 ~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCC
T ss_conf 7778998989788023868867757887897879688
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=211.67 Aligned_cols=153 Identities=19% Similarity=0.290 Sum_probs=75.4
Q ss_pred EEEEEECCCCCCCCCC--CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCC------CCCC----CCCC
Q ss_conf 2368720356887899--98999972299933278865444111778820099825753323------2360----1125
Q 002569 517 IVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNRNPLRTITGGFFQSMSCLTVLKMSDNETLR------QLPM----GISK 584 (906)
Q Consensus 517 ~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~i~------~lp~----~~~~ 584 (906)
+++.|++++|.+..++ .+..+++|+.|++++|.+..+++..+.++++|++|+++++ ... .+|. .+..
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~-~~~~~~~~~~lp~i~~~~~~~ 327 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS-FTKQSISLASLPKIDDFSFQW 327 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC-BCCC------CCEECTTTTTT
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCH-HHHCCCCCCCCCCCCHHHCCC
T ss_conf 7888778788767568021167410568557788567658656267888557736331-321333335545438656246
Q ss_pred CCCCCEEECCCCCCCCC-CHHHHCCCCCCEECCCCCCC-CCCCCHHHHCCC--CCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 43465531156744334-82221799895732324334-321170010489--778566612024458888888533130
Q 002569 585 LVSLQLLDISKTSVVEL-PEELKALVNLKCLNLDWAKE-LVVVPQQLLSNF--SRLRVLRMFAIGVRSPYGLSSSWHENV 660 (906)
Q Consensus 585 L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~-~~~lp~~~i~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~ 660 (906)
+++|++|++++|.+..+ |..+..+++|++|++++|.. ...++...+..+ ++|+.|++.+|.+.. ..
T Consensus 328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~----------~~ 397 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK----------IE 397 (680)
T ss_dssp CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCE----------EC
T ss_pred CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCE----------EC
T ss_conf 77788887989826878855740656872898879801443235322024556867668899997776----------77
Q ss_pred HHHHCCCCCCCEEEEEEECH
Q ss_conf 77630998862899997130
Q 002569 661 AEELLGLKYLEVLEITFRSF 680 (906)
Q Consensus 661 ~~~l~~l~~L~~L~l~~~~~ 680 (906)
+..+..+++|+.|+++.|.+
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l 417 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEI 417 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCC
T ss_pred HHHHHCCCCCCEEECCCCCC
T ss_conf 54420778888886778757
Done!