BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002570
(906 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 6/224 (2%)
Query: 678 IYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGG---LRVN 734
++VR E+R+D+ + I G TPY +G F FD++ P +YP PPLV+ + G +R N
Sbjct: 100 VFVRCDEERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFN 159
Query: 735 PNLYESGKVCLSLLNTWTGSGTEVWNPGGSTIXXXXXXXXXXXXNEKPYFNEAGYDKQIG 794
PNLY GKVCLS+LNTW G E WNP S+ +PYFNE GY++ G
Sbjct: 160 PNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRG 219
Query: 795 RAEGEKNSVSYNENAFLVTCK-SMLYLLHKPPKHFKELVEEHFSQRCKYILLACKAYMEG 853
G ++S Y+ N T K + L + P FKE++ +HF + I C+ ++
Sbjct: 220 TPSGTQSSREYDGNIRQATVKWAXLEQIRNPSPCFKEVIHKHFYLKRVEIXAQCEEWI-- 277
Query: 854 AAVGTASGCKENGENSNGCSVGFKIMLAKLFPKLVEAFSSKGID 897
A + S K G + + K A+L +L++ +G+D
Sbjct: 278 ADIQQYSSDKRVGRTXSHHAAALKRHTAQLREELLKLPCPEGLD 321
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 662 KVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEP 721
++++E +L P I +D++D +RA I+G TPY G+F ++ +P YP EP
Sbjct: 8 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP 67
Query: 722 PLVHYISGGLRVNPNLYESGKVCLSLL 748
P + +++ +PN+ +G++CL +L
Sbjct: 68 PQIRFLTP--IYHPNIDSAGRICLDVL 92
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 661 KKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHE 720
+++ +++ +++ P + D V + A I+G TPY DG F + EYP++
Sbjct: 7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 66
Query: 721 PPLVHYISGGLRVNPNLYESGKVCLSLL-NTWTGS 754
PP V ++S +PN+Y +G++CL +L N WT +
Sbjct: 67 PPHVKFLSEMF--HPNVYANGEICLDILQNRWTPT 99
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 661 KKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHE 720
+++ +++ L++ P + ED + A I G + TP+ DG F + EYP++
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 721 PPLVHYISGGLRVNPNLYESGKVCLSLL-NTWTGS 754
PP V +IS +PN+Y G +CL +L N W+ +
Sbjct: 67 PPTVKFISKMF--HPNVYADGSICLDILQNRWSPT 99
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 661 KKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHE 720
+++ +++ L++ P + ED + A I G + TP+ DG F + EYP++
Sbjct: 10 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 69
Query: 721 PPLVHYISGGLRVNPNLYESGKVCLSLL-NTWTGS 754
PP V +IS +PN+Y G +CL +L N W+ +
Sbjct: 70 PPTVKFISKMF--HPNVYADGSICLDILQNRWSPT 102
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 661 KKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHE 720
+++ +++ L++ P + E+ + A I G +GTP+ DG F I EYP++
Sbjct: 7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNK 66
Query: 721 PPLVHYISGGLRVNPNLYESGKVCLSLL-NTWTGS 754
PP V ++S +PN+Y G +CL +L N W+ +
Sbjct: 67 PPTVRFLSKMF--HPNVYADGSICLDILQNRWSPT 99
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 661 KKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHE 720
K++ +E S LE+ P + D + +A+I+G +PY G+FF I P +YP +
Sbjct: 5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFK 64
Query: 721 PPLVHYISGGLRVNPNLYESGKVCLSLL-NTWT 752
PP + + + +PN+ +G +CL +L + W+
Sbjct: 65 PPKISFTTK--IYHPNINANGNICLDILKDQWS 95
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E S L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 13 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 72
Query: 720 EPPLVHYISGGLRV-NPNLYESGKVCLSLLNT-WT 752
+PP V + + R+ +PN+ +G +CL +L + W+
Sbjct: 73 KPPKVAFTT---RIYHPNINSNGSICLDILRSQWS 104
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E S L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 2 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 61
Query: 720 EPPLVHYISGGLRV-NPNLYESGKVCLSLLNT-WT 752
+PP V + + R+ +PN+ +G +CL +L + W+
Sbjct: 62 KPPKVAFTT---RIYHPNINSNGSICLDILRSQWS 93
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++Q+E L++ P D + +A I+G +PY G+FF I P +YP
Sbjct: 8 LKRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPF 67
Query: 720 EPPLVHYISGGLRVNPNLYESGKVCLSLLNT-WTGSGT 756
+PP V + + +PN+ +G +CL +L + W+ + T
Sbjct: 68 KPPKVAFTTK--IYHPNINSNGSICLDILRSQWSPALT 103
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E S L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 5 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 720 EPPLVHYISGGLRV-NPNLYESGKVCLSLLNT-WT 752
+PP V + + R+ +PN+ +G +CL +L + W+
Sbjct: 65 KPPKVAFTT---RIYHPNINSNGSICLDILRSQWS 96
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 720 EPPLVHYISGGLRV-NPNLYESGKVCLSLLNTWTG 753
+PP V + + R+ +PN+ +G +CL +L + G
Sbjct: 65 KPPKVAFTT---RIYHPNINSNGSICLDILRSQWG 96
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 13 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 72
Query: 720 EPPLVHYISGGLRV-NPNLYESGKVCLSLLNT-WT 752
+PP V + + R+ +PN+ +G +CL +L + W+
Sbjct: 73 KPPKVAFTT---RIYHPNINSNGSICLDILRSQWS 104
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 3 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 720 EPPLVHYISGGLRV-NPNLYESGKVCLSLLNT-WT 752
+PP V + + R+ +PN+ +G +CL +L + W+
Sbjct: 63 KPPKVAFTT---RIYHPNINSNGSICLDILRSQWS 94
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 21 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 80
Query: 720 EPPLVHYISGGLRV-NPNLYESGKVCLSLLNT-WT 752
+PP V + + R+ +PN+ +G +CL +L + W+
Sbjct: 81 KPPKVAFTT---RIYHPNINSNGSICLDILRSQWS 112
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 720 EPPLVHYISGGLRV-NPNLYESGKVCLSLLNT-WT 752
+PP V + + R+ +PN+ +G +CL +L + W+
Sbjct: 65 KPPKVAFTT---RIYHPNINSNGSICLDILRSQWS 96
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L K P D + +A I+G + +PY G+FF +I P +YP
Sbjct: 23 LKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPF 82
Query: 720 EPPLVHYISGGLRVNPNLYESGKVCLSLL-NTWTGSGT 756
+PP V++ + +PN+ G +CL +L + W+ + T
Sbjct: 83 KPPKVNFTTK--IYHPNINSQGAICLDILKDQWSPALT 118
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E S L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 11 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 70
Query: 720 EPPLVHYISGGLRV-NPNLYESGKVCLSLLNT-WTGSGT 756
+PP V + + R+ +PN+ +G +CL +L + W+ + T
Sbjct: 71 KPPKVAFTT---RIYHPNINSNGSICLDILRSQWSPALT 106
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L K P + D + +A I+G +PY G+FF I P +YP
Sbjct: 3 LKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPF 62
Query: 720 EPPLVHYISGGLRV-NPNLYESGKVCLSLL-NTWTGSGT 756
+PP V++ + R+ +PN+ +G +CL +L + W+ + T
Sbjct: 63 KPPKVNFTT---RIYHPNINSNGSICLDILRDQWSPALT 98
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 720 EPPLVHYISGGLRV-NPNLYESGKVCLSLLNT-WT 752
+PP V + + R+ +PN+ +G +CL L + W+
Sbjct: 65 KPPKVAFTT---RIYHPNINSNGSICLDALRSQWS 96
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 694 IVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLL-NTWT 752
I G GTPY G + ++FLP +YP EPP V +++ +PN+ + G++CL +L + W+
Sbjct: 37 INGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTK--IYHPNIDKLGRICLDILKDKWS 94
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 8 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 67
Query: 720 EPPLVHYISGGLRV-NPNLYESGKVCLSLLNT-WTGSGT 756
+PP V + + R+ +PN+ +G +CL +L + W+ + T
Sbjct: 68 KPPKVAFTT---RIYHPNINSNGSICLDILRSQWSPALT 103
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++Q+E L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 6 LKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPF 65
Query: 720 EPPLVHYISGGLRV-NPNLYESGKVCLSLLNT-WTGSGT 756
+PP V + + R+ +PN+ +G +CL +L + W+ + T
Sbjct: 66 KPPKVAFTT---RIYHPNINSNGSICLDILRSQWSPALT 101
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 694 IVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLL-NTWT 752
I G GTPY G + ++FLP +YP EPP V +++ +PN+ + G++CL +L + W+
Sbjct: 37 INGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTK--IYHPNIDKLGRICLDILKDKWS 94
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 684 EDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKV 743
+D + + I G + +PY DG+F +++LP +YP E P V +++ +PN+ G++
Sbjct: 29 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTK--IYHPNIDRLGRI 86
Query: 744 CLSLLNT-WT 752
CL +L T W+
Sbjct: 87 CLDVLKTNWS 96
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 661 KKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHE 720
K++ +++ L++ P I ++ + L A I G TP+ G F + +YP++
Sbjct: 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNK 66
Query: 721 PPLVHYISGGLRVNPNLYESGKVCLSLL-NTWT 752
PP V ++S +PN+Y G +CL +L N W+
Sbjct: 67 PPTVRFVS--RMFHPNIYADGSICLDILQNQWS 97
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 691 RAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNL-YESGKVCLSLL- 748
R I G GTPY G F DI +PP+YP+ PP + +++ +PN+ ++G +CL +L
Sbjct: 78 RGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIW--HPNISSQTGAICLDILK 135
Query: 749 NTWT 752
+ W+
Sbjct: 136 HEWS 139
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 720 EPPLVHYISGGLRV-NPNLYESGKVCLSLLNT-WTGSGT 756
+PP V + + R+ +PN+ +G +CL +L + W+ + T
Sbjct: 65 KPPKVAFTT---RIYHPNINSNGSICLDILRSQWSPALT 100
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 684 EDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKV 743
+D + + I G + +PY DG+F +++LP +YP E P V +++ +PN+ G++
Sbjct: 31 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTK--IYHPNIDRLGRI 88
Query: 744 CLSLLNT-WT 752
CL +L T W+
Sbjct: 89 CLDVLKTNWS 98
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Query: 660 VKKVQQEWSILEKSLPETIY---VRIFEDRVDLIR--AAIVGAKGTPYHDGLFFFDIFLP 714
++++Q+E K P Y V+ + +DL + A I G +GT + G++ + P
Sbjct: 8 LQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYP 67
Query: 715 PEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLLN 749
EYP +PP V + +G +PN+Y SG +CLS+LN
Sbjct: 68 NEYPSKPPKVKFPAGFY--HPNVYPSGTICLSILN 100
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A +G +PY G+FF I P +YP
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 720 EPPLVHYISGGLRV-NPNLYESGKVCLSLLNT-WT 752
+PP V + + R+ +PN+ +G +CL +L + W+
Sbjct: 65 KPPKVAFTT---RIYHPNINSNGSICLDILRSQWS 96
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Query: 660 VKKVQQEWSILEKSLPETIY---VRIFEDRVDLIR--AAIVGAKGTPYHDGLFFFDIFLP 714
++++Q+E K P Y V+ + +DL + A I G +GT + G++ + P
Sbjct: 6 LQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYP 65
Query: 715 PEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLLN 749
EYP +PP V + +G +PN+Y SG +CLS+LN
Sbjct: 66 NEYPSKPPKVKFPAGFY--HPNVYPSGTICLSILN 98
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 662 KVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEP 721
+V +E L+K P + +D L+ A++ PYH F I PPEYP +P
Sbjct: 5 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKP 64
Query: 722 PLVHYISGGLRVNPNLYESGKVCLSLLNTWTGSGTEVWNPGGST 765
P++ + + +PN+ E+G++CL +++ +E W P T
Sbjct: 65 PMIKFTTK--IYHPNVDENGQICLPIIS------SENWKPCTKT 100
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++Q+E S L++ P D + +A I+G + Y G+FF + P +YP
Sbjct: 5 LKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 64
Query: 720 EPPLVHYISGGLRVNPNLYESGKVCLSLLNT-WTGSGT 756
+PP + + + +PN+ +G +CL +L + W+ + T
Sbjct: 65 KPPKIAFTTK--IYHPNINSNGSICLDILRSQWSPALT 100
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 662 KVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEP 721
+V +E L+K P + +D L+ A++ PYH F I PPEYP +P
Sbjct: 8 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKP 67
Query: 722 PLVHYISGGLRVNPNLYESGKVCLSLLNTWTGSGTEVWNPGGST 765
P++ + + +PN+ E+G++CL +++ +E W P T
Sbjct: 68 PMIKFTTK--IYHPNVDENGQICLPIIS------SENWKPCTKT 103
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++Q+E S L++ P D + +A I+G + Y G+FF + P +YP
Sbjct: 9 LKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 68
Query: 720 EPPLVHYISGGLRVNPNLYESGKVCLSLLNT-WTGSGT 756
+PP + + + +PN+ +G +CL +L + W+ + T
Sbjct: 69 KPPKIAFTTK--IYHPNINSNGSICLDILRSQWSPALT 104
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++Q+E S L++ P D + +A I+G + Y G+FF + P +YP
Sbjct: 21 LKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 80
Query: 720 EPPLVHYISGGLRVNPNLYESGKVCLSLLNT-WTGSGT 756
+PP + + + +PN+ +G +CL +L + W+ + T
Sbjct: 81 KPPKIAFTTK--IYHPNINSNGSICLDILRSQWSPALT 116
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E S L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 3 LKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 720 EPPLVHYISGGLRV-NPNLYESGKVCLSLLNT-WT 752
+PP V + + R+ +PN+ +G + L +L + W+
Sbjct: 63 KPPKVAFTT---RIYHPNINSNGSISLDILRSQWS 94
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
++++Q+E +++ P D + A I G +PY GLFF D+ P +YP
Sbjct: 6 MRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPF 65
Query: 720 EPPLVHYISGGLRVNPNLYESGKVCLSLL-NTWTGSGT 756
+ P V +++ +PN+ ++G +CL +L + W+ + T
Sbjct: 66 KAPRVTFMTKVY--HPNINKNGVICLDILKDQWSPALT 101
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
K++Q+E + + P D + R+ I+G G+ Y G+FF DI PEYP
Sbjct: 50 AKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPF 109
Query: 720 EPPLVHYISGGLRVNPNLYESGKVCLSLL-NTWTGSGT 756
+PP V + + N N G +CL +L + W+ + T
Sbjct: 110 KPPKVTFRTRIYHCNIN--SQGVICLDILKDNWSPALT 145
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 21 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 80
Query: 720 EPPLVHYISGGLRV-NPNLYESGKVCLSLLNT-WT 752
+PP V + + R+ +PN+ +G + L +L + W+
Sbjct: 81 KPPKVAFTT---RIYHPNINSNGSIXLDILRSQWS 112
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 644 LGASKGLALS---QVKRAWVKKVQQEWSILEKSLPE-TIYVRIFEDRVDLIRAAIVGAKG 699
LG+ G+ALS Q ++AW K + + P+ T+ + +E AI G KG
Sbjct: 3 LGSMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWE-------CAIPGKKG 55
Query: 700 TPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLL 748
TP+ GLF + +YP PP + +PN+Y SG VCLS+L
Sbjct: 56 TPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPNVYPSGTVCLSIL 102
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
++ V +E + L P+ I V E+ + ++ I G +GTPY GLF + L ++P
Sbjct: 15 IRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPA 74
Query: 720 EPPLVHYISGGLRVNPNLYESGKVCLSLLN-TWTG 753
PP ++++ +PN+ +G++C+++L WT
Sbjct: 75 SPPKGYFLTKIF--HPNVGANGEICVNVLKRDWTA 107
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 645 GASKGLALSQVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHD 704
G+ +A+ ++KR + + ++ E ++ I V + ++ +R I G TPY
Sbjct: 16 GSMANIAVQRIKREFKEVLKSE-----ETSKNQIKVDLVDENFTELRGEIAGPPDTPYEG 70
Query: 705 GLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYE-SGKVCLSLL-NTWTGSGT 756
G + +I +P YP PP V +I+ +PN+ +G +CL +L + W + T
Sbjct: 71 GRYQLEIKIPETYPFNPPKVRFITKIW--HPNISSVTGAICLDILKDQWAAAMT 122
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 633 DMVSDSSDHHFLGASKGLALSQVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRA 692
D+ +D D ++ + +K+ +E E++ I V + ++ +R
Sbjct: 35 DLGTDDDDKAMADIGSEFDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRG 94
Query: 693 AIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYE-SGKVCLSLL-NT 750
I G TPY G + +I +P YP PP V +I+ +PN+ +G +CL +L +
Sbjct: 95 EIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW--HPNISSVTGAICLDILKDQ 152
Query: 751 WTGSGT 756
W + T
Sbjct: 153 WAAAMT 158
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 645 GASKGLALSQVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHD 704
G+ +A+ ++KR + + ++ E ++ I V + ++ +R I G TPY
Sbjct: 1 GSMANIAVQRIKREFKEVLKSE-----ETSKNQIKVDLVDENFTELRGEIAGPPDTPYEG 55
Query: 705 GLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYE-SGKVCLSLL-NTWTGSGT 756
G + +I +P YP PP V +I+ +PN+ +G +CL +L + W + T
Sbjct: 56 GRYQLEIKIPETYPFNPPKVRFITKIW--HPNISSVTGAICLDILKDQWAAAMT 107
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 656 KRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPP 715
++ +K++QQ +++ S P + E+ + + I G TPY DG+F + P
Sbjct: 6 QKRLLKELQQ---LIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPK 62
Query: 716 EYPHEPPLVHYISGGLRVNPNLYESGKVCLSLLNT 750
+YP PP + + L +PN+Y +G+VC+S+L++
Sbjct: 63 DYPLSPPKLTFTPSIL--HPNIYPNGEVCISILHS 95
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
K++Q+E + + P D + R+ I+G G+ Y G+FF DI P+YP
Sbjct: 5 AKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPF 64
Query: 720 EPPLVHYISGGLRVNPNLYESGKVCLSLL-NTWTGSGT 756
+PP V + + N N G +CL +L + W+ + T
Sbjct: 65 KPPKVTFRTRIYHCNIN--SQGVICLDILKDNWSPALT 100
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 684 EDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKV 743
+D + + I G + +PY DG+F +++LP +YP E P V +++ +PN+ G++
Sbjct: 29 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTK--IYHPNIDRLGRI 86
Query: 744 CLSLLNT-WT 752
L +L T W+
Sbjct: 87 SLDVLKTNWS 96
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 6 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 65
Query: 720 EPPLVHYISGGLRV-NPNLYESGKVCLSLLNT-WTGSGT 756
+PP V + + R+ +PN+ +G + L +L + W+ + T
Sbjct: 66 KPPKVAFTT---RIYHPNINSNGSISLDILRSQWSPALT 101
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 13/108 (12%)
Query: 645 GASKGLALS---QVKRAWVKKVQQEWSILEKSLPE-TIYVRIFEDRVDLIRAAIVGAKGT 700
G+ G+ALS Q ++AW K + + P+ T+ + +E AI G KGT
Sbjct: 1 GSMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWE-------CAIPGKKGT 53
Query: 701 PYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLL 748
P+ GLF + +YP PP + +PN+Y SG VCLS+L
Sbjct: 54 PWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPNVYPSGTVCLSIL 99
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 5 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 64
Query: 720 EPPLVHYISGGLRV-NPNLYESGKVCLSLLNT-WTGSGT 756
+PP V + + R+ +PN+ +G + L +L + W+ + T
Sbjct: 65 KPPKVAFTT---RIYHPNINSNGSISLDILRSQWSPALT 100
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 693 AIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLL 748
AI G KGTP+ GLF + +YP PP + +PN+Y SG VCLS+L
Sbjct: 45 AIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPNVYPSGTVCLSIL 98
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 693 AIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLL 748
AI G KGTP+ GLF + +YP PP + +PN+Y SG VCLS+L
Sbjct: 44 AIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPNVYPSGTVCLSIL 97
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 693 AIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLL 748
AI G KGTP+ GLF + +YP PP + +PN+Y SG VCLS+L
Sbjct: 46 AIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPNVYPSGTVCLSIL 99
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 693 AIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLL 748
AI G KGTP+ GLF + +YP PP + +PN+Y SG VCLS+L
Sbjct: 47 AIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPNVYPSGTVCLSIL 100
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 693 AIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLL 748
AI G KGTP+ GLF + +YP PP + +PN+Y SG VCLS+L
Sbjct: 47 AIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPNVYPSGTVCLSIL 100
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 693 AIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLL 748
AI G KGTP+ GLF + +YP PP + +PN+Y SG VCLS+L
Sbjct: 47 AIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPNVYPSGTVCLSIL 100
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 649 GLALSQVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFF 708
+A++ + +K+ +E E++ I V + ++ +R I G TPY G +
Sbjct: 2 AMAMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQ 61
Query: 709 FDIFLPPEYPHEPPLVHYISGGLRVNPNLYE-SGKVCLSLL-NTWTGSGT 756
+I +P YP PP V +I+ +PN+ +G +CL +L + W + T
Sbjct: 62 LEIKIPETYPFNPPKVRFITKIW--HPNISSVTGAICLDILKDQWAAAMT 109
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++ +E + L + P D + +A I+G +PY G+FF I P +YP
Sbjct: 3 LKRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 62
Query: 720 EPPLVHYISGGLRV-NPNLYESGKVCLSLLNT-WT 752
+PP V + + R+ +P + +G + L +L + W+
Sbjct: 63 KPPKVAFTT---RIYHPAINSNGSISLDILRSQWS 94
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
+K++Q+E S L++ P D + +A I+G + Y G+FF + P +YP
Sbjct: 9 LKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 68
Query: 720 EPPLVHYISGGLRVNPNLYESGKVCLSLLNT-WTGSGT 756
+PP + + + +PN+ +G + L +L + W+ + T
Sbjct: 69 KPPKIAFTTK--IYHPNINSNGSIKLDILRSQWSPALT 104
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Query: 649 GLALSQVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFF 708
+A+ ++KR + + ++ E ++ I V + ++ +R I G TPY G +
Sbjct: 4 NIAVQRIKREFKEVLKSE-----ETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQ 58
Query: 709 FDIFLPPEYPHEPPLVHYISGGLRVNPNLYE-SGKVCLSLL-NTWTGSGT 756
+I +P YP PP V +I+ +PN+ +G +CL +L + W + T
Sbjct: 59 LEIKIPETYPFNPPKVRFITKIW--HPNISSVTGAICLDILKDQWAAAMT 106
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 661 KKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHE 720
K++ +E + L + P D + +A I+G +PY G+FF I P +YP +
Sbjct: 3 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 721 PPLVHYISGGLRV-NPNLYESGKVCLSLLNT 750
PP V + + R+ +PN+ +G + L +L +
Sbjct: 63 PPKVAFTT---RIYHPNINSNGSISLDILRS 90
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 682 IFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYE-S 740
+ E + ++ +G GTPY G F DI +P EYP +PP + + + +PN+ +
Sbjct: 27 VSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVY--HPNISSVT 84
Query: 741 GKVCLSLL-NTWT 752
G +CL +L N W+
Sbjct: 85 GAICLDILRNAWS 97
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 649 GLALSQVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFF 708
G ++ + R +K+ Q+ +L + +P I E I G + +P+ G F
Sbjct: 1 GSHMAGLPRRIIKETQR---LLAEPVP-GIKAEPDESNARYFHVVIAGPQDSPFEGGTFK 56
Query: 709 FDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLL-NTWT 752
++FLP EYP P V +++ +PN+ + G++CL +L + W+
Sbjct: 57 LELFLPEEYPMAAPKVRFMTK--IYHPNVDKLGRICLDILKDKWS 99
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 651 ALSQVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFD 710
+++ + R +K+ Q+ +L + +P I E I G + +P+ G F +
Sbjct: 5 SMAGLPRRIIKETQR---LLAEPVP-GIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLE 60
Query: 711 IFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLL-NTWT 752
+FLP EYP P V +++ +PN+ + G++CL +L + W+
Sbjct: 61 LFLPEEYPMAAPKVRFMTK--IYHPNVDKLGRICLDILKDKWS 101
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 684 EDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKV 743
E I G + +P+ G F ++FLP EYP P V +++ +PN+ + G++
Sbjct: 29 ESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTK--IYHPNVDKLGRI 86
Query: 744 CLSLL-NTWT 752
CL +L + W+
Sbjct: 87 CLDILKDKWS 96
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 687 VDLI--RAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVC 744
+DL+ + I G T + GL+ + P EYP PP + +PN+Y SG VC
Sbjct: 42 LDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLF--HPNVYPSGTVC 99
Query: 745 LSLLNTWTGSGTEVWNPG 762
LS+LN G W P
Sbjct: 100 LSILNEEEG-----WKPA 112
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 684 EDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKV 743
E I G + +P+ G F ++FLP EYP P V +++ +PN+ + G++
Sbjct: 27 ESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTK--IYHPNVDKLGRI 84
Query: 744 CLSLL-NTWT 752
CL +L + W+
Sbjct: 85 CLDILKDKWS 94
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 684 EDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKV 743
E I G + +P+ G F ++FLP EYP P V +++ +PN+ + G++
Sbjct: 31 ESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTK--IYHPNVDKLGRI 88
Query: 744 CLSLL-NTWT 752
CL +L + W+
Sbjct: 89 CLDILKDKWS 98
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 692 AAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLLNTW 751
AI G T Y G F + P +YP+ PP +++ +PN+YE+G VC+S+L+
Sbjct: 39 VAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMW--HPNIYETGDVCISILHPP 96
Query: 752 TG---SG---TEVWNP 761
SG +E WNP
Sbjct: 97 VDDPQSGELPSERWNP 112
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 682 IFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYE-S 740
+ E + ++ +G GTPY G F DI +P EYP +PP + + + +PN+ +
Sbjct: 26 VSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVY--HPNISSVT 83
Query: 741 GKVCLSLL-NTWT 752
G +CL +L N W+
Sbjct: 84 GAICLDILKNAWS 96
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 692 AAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLLNTW 751
AI G T Y G F + P +YP+ PP +++ +PN+YE+G VC+S+L+
Sbjct: 42 VAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMW--HPNIYETGDVCISILHPP 99
Query: 752 TG---SG---TEVWNP 761
SG +E WNP
Sbjct: 100 VDDPQSGELPSERWNP 115
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 684 EDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKV 743
+D + + I G + +PY DG+F +++LP +YP E P V +++ +P + G++
Sbjct: 29 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTK--IYHPAIDRLGRI 86
Query: 744 CLSLLNT-WT 752
L +L T W+
Sbjct: 87 SLDVLKTNWS 96
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 694 IVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNL-YESGKVCLSLL-NTW 751
I G +GTPY G F I +P +YP+ PP + +++ +PN+ ++G +CL +L N W
Sbjct: 59 IKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIW--HPNISSQTGAICLDVLKNEW 116
Query: 752 TGSGT 756
+ + T
Sbjct: 117 SPALT 121
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 693 AIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLL 748
AI G KGTP+ GLF + +YP PP + +P +Y SG VCLS+L
Sbjct: 47 AIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPQVYPSGTVCLSIL 100
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 693 AIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLL 748
AI G KGTP+ GLF + +YP PP + +PN+ SG VCLS+L
Sbjct: 47 AIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPNVAPSGTVCLSIL 100
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 650 LALSQVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIR--AAIVGAKGTPYHDGLF 707
+ S+ + + K++QQE L S I F D +L + A + G K T Y +
Sbjct: 1 MTTSKERHSVSKRLQQELRTLLMSGDPGITA--FPDGDNLFKWVATLDGPKDTVYESLKY 58
Query: 708 FFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLLN-TWTGS 754
+ P +YP++PP+V + + +PN+ +SG +CL +L WT S
Sbjct: 59 KLTLEFPSDYPYKPPVVKFTTPCW--HPNVDQSGNICLDILKENWTAS 104
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 696 GAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYE-SGKVCLSLLN-TWT 752
G +GTPY DG + + LP +YP + P + + + L +PN+ E SG VCL ++N TWT
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRIL--HPNVDERSGSVCLDVINQTWT 102
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 693 AIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLL 748
AI G KGTP+ GLF + +YP PP + +PN+Y SG V LS+L
Sbjct: 44 AIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPNVYPSGTVSLSIL 97
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 701 PYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLLNTWTGSGTEVWN 760
PY G F +I P EYP +PP + + + +PN+ E G+VCL +++ E W
Sbjct: 45 PYDKGAFRIEINFPAEYPFKPPKITFKTK--IYHPNIDEKGQVCLPVIS------AENWK 96
Query: 761 PGGST 765
P T
Sbjct: 97 PATKT 101
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 701 PYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLLNTWTGSGTEVWN 760
PY G F +I P EYP +PP + + + +PN+ E G+VCL +++ E W
Sbjct: 47 PYDKGAFRIEINFPAEYPFKPPKITFKTK--IYHPNIDEKGQVCLPVIS------AENWK 98
Query: 761 PGGST 765
P T
Sbjct: 99 PATKT 103
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 693 AIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLL 748
AI G KGTP+ GLF + +YP PP + +PN+Y SG V LS+L
Sbjct: 44 AIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF--HPNVYPSGTVXLSIL 97
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 662 KVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEP 721
++Q+E + K+ P + + + + VG + T Y + ++ I P YP +P
Sbjct: 24 RIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKP 83
Query: 722 PLVHYISGGLRVNPNLYESGKVCLSLL 748
P+V+++ + + ++Y +G +CLS+L
Sbjct: 84 PIVYFLQKPPK-HTHVYSNGDICLSVL 109
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 662 KVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEP 721
++Q+E + P + + + + + VG + T Y + ++ I P +YP +P
Sbjct: 10 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP 69
Query: 722 PLVHYISGGLRVNPNLYESGKVCLSLL 748
P+V+++ + + ++Y +G +CLSLL
Sbjct: 70 PIVYFLQKPPK-HTHVYSNGDICLSLL 95
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 661 KKVQQEWSILEKSLPE--TIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYP 718
K++Q+E L+ P T+ + ++ + + GA GT Y F YP
Sbjct: 25 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYP 84
Query: 719 HEPPLVHYISGGLRVNPNLYESGKVCLSLLNTWTGSGTEVWNPGGST 765
+ P V + + V+P++Y +G +CLS+L TE W+P S
Sbjct: 85 FDSPQVMFTGENIPVHPHVYSNGHICLSIL-------TEDWSPALSV 124
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 660 VKKVQQEWSILEKSLPETIYV-RIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYP 718
+K++ E+ L + PE I + E+ A I+G + T + G+F + P +YP
Sbjct: 11 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 70
Query: 719 HEPPLVHYISGGLRVNPNLYESGKVCLSLLNT------WTGSGTEVWNP 761
PP + + +PN+Y G+VC+S+L+ S E W+P
Sbjct: 71 LSPPKMRFTCE--MFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP 117
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 660 VKKVQQEWSILEKSLPETIYV-RIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYP 718
+K++ E+ L + PE I + E+ A I+G + T + G+F + P +YP
Sbjct: 9 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 68
Query: 719 HEPPLVHYISGGLRVNPNLYESGKVCLSLLNT------WTGSGTEVWNP 761
PP + + +PN+Y G+VC+S+L+ S E W+P
Sbjct: 69 LSPPKMRFTCE--MFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP 115
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 660 VKKVQQEWSILEKSLPETIYV-RIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYP 718
+K++ E+ L + PE I + E+ A I+G + T + G+F + P +YP
Sbjct: 8 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 67
Query: 719 HEPPLVHYISGGLRVNPNLYESGKVCLSLLNT------WTGSGTEVWNP 761
PP + + +PN+Y G+VC+S+L+ S E W+P
Sbjct: 68 LSPPKMRFTCE--MFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP 114
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 660 VKKVQQEWSILEKSLPETIYV-RIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYP 718
+K++ E+ L + PE I + E+ A I+G + T + G+F + P +YP
Sbjct: 5 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 64
Query: 719 HEPPLVHYISGGLRVNPNLYESGKVCLSLLNTWTG------SGTEVWNP 761
PP + + +PN+Y G+VC+S+L+ S E W+P
Sbjct: 65 LSPPKMRFTCEMF--HPNIYPDGRVCISILHAPGDDPMGYESSAERWSP 111
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 20/98 (20%)
Query: 679 YVRIFEDRVDLIRA------------AIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHY 726
Y+RI +D V I A + G + TPY G + + P E+P +PP ++
Sbjct: 23 YLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYM 82
Query: 727 ISGGLRVNPNLYESGKVCLSLLNTWTGSGTEVWNPGGS 764
I+ R N ++CLS+ T + WNP S
Sbjct: 83 ITPNGRFKCN----TRLCLSI----TDFHPDTWNPAWS 112
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 696 GAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYE-SGKVCLSLLN-TWTG 753
G +GTPY G++ + LP +YP + P + +++ +PN+ E SG VCL ++N TWT
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIF--HPNIDEASGTVCLDVINQTWTA 116
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 694 IVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLLN 749
++G T Y G F + P +YP +PP + +IS +PN+ + G VC+S+L+
Sbjct: 40 VIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIW--HPNIDKEGNVCISILH 93
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 685 DRVDLIR--AAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGK 742
D DL R I+G T Y G+F + P +YP PP + +I+ +PN+ ++G
Sbjct: 43 DDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIW--HPNVDKNGD 100
Query: 743 VCLSLLN 749
VC+S+L+
Sbjct: 101 VCISILH 107
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 661 KKVQQEWSILEKSLPETIYVRIFE-DRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
K + +E + LE +LP T V + +++ + + +G Y G F F+ +P Y
Sbjct: 17 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGY-YQGGKFQFETEVPDAYNM 75
Query: 720 EPPLVHYISGGLRVNPNLYESGKVCLSLLNTWTGSGTEVWNP 761
PP V ++ +PN+ E+G++CLSLL + GT W P
Sbjct: 76 VPPKVKCLTKIW--HPNITETGEICLSLLREHSIDGTG-WAP 114
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 661 KKVQQEWSILEKSLPETIYVRIFE-DRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
K + +E + LE +LP T V + +++ + + +G Y G F F+ +P Y
Sbjct: 17 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGY-YQGGKFQFETEVPDAYNM 75
Query: 720 EPPLVHYISGGLRVNPNLYESGKVCLSLLNTWTGSGTEVWNP 761
PP V ++ +PN+ E+G++CLSLL + GT W P
Sbjct: 76 VPPKVKCLTKIW--HPNITETGEICLSLLREHSIDGTG-WAP 114
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 696 GAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYE-SGKVCLSLLN-TWT 752
G GT Y G++ + LP +YP P + +++ L PN+ E SG VCL ++N TWT
Sbjct: 37 GPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLH--PNVDEASGSVCLDVINQTWT 93
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 685 DRVDLIR--AAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGK 742
D DL + A I G TPY + F I +P YP PP + ++ + + +G+
Sbjct: 43 DETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGE 102
Query: 743 VCLSLLNTWTGSGTEVWN 760
+CL++L T VW+
Sbjct: 103 ICLNILK--PEEWTPVWD 118
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 685 DRVDLIR--AAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGK 742
D DL + A I G TPY + F I +P YP PP + ++ + +G+
Sbjct: 43 DETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGE 102
Query: 743 VCLSLLNTWTGSGTEVWN 760
+CL++L T VW+
Sbjct: 103 ICLNILK--PEEWTPVWD 118
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 685 DRVDLIR--AAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGK 742
D DL + A I G TPY + F I +P YP PP + ++ + +G+
Sbjct: 43 DETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGE 102
Query: 743 VCLSLLNTWTGSGTEVWN 760
+CL++L T VW+
Sbjct: 103 ICLNILK--PEEWTPVWD 118
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 656 KRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTP-YHDGLFFFDIFLP 714
K+A +++ + I E +LP+T + F D DL+ +V Y G F F +
Sbjct: 22 KKASAAQLRIQKDINELNLPKTCDIS-FSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVG 80
Query: 715 PEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLLNTWTGSGTEVWNP 761
YPH+PP V + +PN+ G V L++L E W P
Sbjct: 81 QGYPHDPPKVK--CETMVYHPNIDLEGNVALNILR-------EDWKP 118
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 661 KKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHE 720
K++QQE L S + I D + I GA GT Y D + + P YP+
Sbjct: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 92
Query: 721 PPLVHYISGGLRVNPNLYESGKVCLSLL 748
P V +++ +PN+ G + L +L
Sbjct: 93 APTVKFLTPC--YHPNVDTQGNISLDIL 118
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 658 AWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTP-YHDGLFFFDIFLPPE 716
A +++ + I E +LP+T + F D DL+ +V Y G F F +
Sbjct: 4 ASAAQLRIQKDINELNLPKTCDIS-FSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQG 62
Query: 717 YPHEPPLVHYISGGLRVNPNLYESGKVCLSLLNTWTGSGTEVWNP 761
YPH+PP V +PN+ G VCL++L E W P
Sbjct: 63 YPHDPPKVK--CETXVYHPNIDLEGNVCLNIL-------REDWKP 98
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 676 ETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNP 735
+TIY I +V ++ G G Y + F D +YPHEPP V +++ +P
Sbjct: 47 DTIYNWIL--KVKAPADSVYGGAGNTYQLSVLFSD-----DYPHEPPTVRFVTPVY--SP 97
Query: 736 NLYESGKVCLSLLNT-WT 752
+ G +C ++N WT
Sbjct: 98 LVTGEGGICDRMVNDFWT 115
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 692 AAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGK-----VCLS 746
I+G T Y + ++ I P+YP PP V +++ ++N N S +S
Sbjct: 73 GMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVT---KINMNGVNSSNGVVDPRAIS 129
Query: 747 LLNTWTGS 754
+L W S
Sbjct: 130 VLAKWQNS 137
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 692 AAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGK-----VCLS 746
I+G T Y + ++ I P+YP PP V +++ ++N N S +S
Sbjct: 63 GMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVT---KINMNGVNSSNGVVDPRAIS 119
Query: 747 LLNTWTGS 754
+L W S
Sbjct: 120 VLAKWQNS 127
>pdb|3E4D|A Chain A, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
pdb|3E4D|B Chain B, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
pdb|3E4D|C Chain C, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
pdb|3E4D|E Chain E, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
pdb|3E4D|D Chain D, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
pdb|3E4D|F Chain F, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
Length = 278
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 709 FDIFLPPEYPHEP-PLVHYISGGLRVNPNLYESGK 742
F +++PP+ HEP P+V Y+SG + N+ E G+
Sbjct: 31 FAVYVPPKAIHEPCPVVWYLSGLTCTHANVXEKGE 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,052,150
Number of Sequences: 62578
Number of extensions: 1230881
Number of successful extensions: 2705
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2540
Number of HSP's gapped (non-prelim): 112
length of query: 906
length of database: 14,973,337
effective HSP length: 108
effective length of query: 798
effective length of database: 8,214,913
effective search space: 6555500574
effective search space used: 6555500574
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)