Query 002570
Match_columns 906
No_of_seqs 341 out of 1723
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 02:40:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002570.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002570hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0895 Ubiquitin-conjugating 100.0 1.3E-77 2.8E-82 706.4 20.7 819 29-903 121-1097(1101)
2 KOG0417 Ubiquitin-protein liga 100.0 5.2E-36 1.1E-40 289.7 13.9 143 660-818 3-147 (148)
3 KOG0895 Ubiquitin-conjugating 100.0 1.9E-35 4.2E-40 350.3 15.5 266 628-895 254-523 (1101)
4 COG5078 Ubiquitin-protein liga 100.0 1.1E-34 2.4E-39 286.3 15.6 142 659-817 6-151 (153)
5 PTZ00390 ubiquitin-conjugating 100.0 2.5E-32 5.4E-37 271.6 16.8 146 659-818 3-148 (152)
6 KOG0419 Ubiquitin-protein liga 100.0 3.1E-32 6.8E-37 256.0 12.6 143 659-815 5-147 (152)
7 PLN00172 ubiquitin conjugating 100.0 1.5E-31 3.2E-36 264.7 16.3 144 660-817 3-146 (147)
8 KOG0418 Ubiquitin-protein liga 100.0 7.5E-30 1.6E-34 253.5 13.3 176 659-850 4-188 (200)
9 KOG0425 Ubiquitin-protein liga 100.0 6.7E-29 1.5E-33 240.2 15.1 150 659-818 6-165 (171)
10 KOG0426 Ubiquitin-protein liga 100.0 6.4E-29 1.4E-33 233.4 13.5 154 657-817 3-163 (165)
11 PF00179 UQ_con: Ubiquitin-con 100.0 9.6E-29 2.1E-33 241.9 14.1 138 662-812 1-139 (140)
12 KOG0424 Ubiquitin-protein liga 99.9 1.2E-27 2.5E-32 228.6 14.1 148 658-817 4-156 (158)
13 cd00195 UBCc Ubiquitin-conjuga 99.9 2.1E-27 4.6E-32 232.8 14.9 139 661-812 2-140 (141)
14 smart00212 UBCc Ubiquitin-conj 99.9 4.5E-27 9.8E-32 231.6 15.3 143 661-816 1-144 (145)
15 KOG0421 Ubiquitin-protein liga 99.9 3E-26 6.6E-31 218.3 11.8 118 655-782 26-143 (175)
16 KOG0422 Ubiquitin-protein liga 99.9 2.7E-25 5.8E-30 211.5 12.8 142 659-816 3-147 (153)
17 KOG0894 Ubiquitin-protein liga 99.9 1.9E-23 4E-28 211.6 15.2 119 656-783 3-121 (244)
18 KOG0423 Ubiquitin-protein liga 99.9 1.4E-23 3E-28 205.3 8.1 153 656-830 8-163 (223)
19 KOG0420 Ubiquitin-protein liga 99.9 1.8E-22 3.9E-27 198.5 11.1 140 655-834 25-168 (184)
20 KOG0427 Ubiquitin conjugating 99.9 1.5E-21 3.2E-26 183.9 11.8 116 655-780 12-127 (161)
21 KOG0416 Ubiquitin-protein liga 99.9 2.7E-21 5.8E-26 189.8 11.7 138 661-817 6-147 (189)
22 KOG0428 Non-canonical ubiquiti 99.7 5.8E-18 1.3E-22 174.3 9.6 113 655-777 8-120 (314)
23 KOG0429 Ubiquitin-conjugating 99.5 1.2E-13 2.6E-18 141.1 14.1 155 661-827 22-179 (258)
24 KOG0896 Ubiquitin-conjugating 98.8 1.6E-08 3.4E-13 97.3 7.0 111 662-780 9-124 (138)
25 PF14461 Prok-E2_B: Prokaryoti 97.6 0.0001 2.3E-09 72.3 5.4 68 703-778 34-105 (133)
26 PF05743 UEV: UEV domain; Int 97.5 0.00031 6.7E-09 68.1 8.1 83 692-782 33-120 (121)
27 KOG0897 Predicted ubiquitin-co 97.5 0.00026 5.5E-09 67.0 6.3 60 707-779 13-77 (122)
28 PF08694 UFC1: Ubiquitin-fold 97.5 9.8E-05 2.1E-09 72.2 3.7 89 654-749 20-118 (161)
29 KOG2391 Vacuolar sorting prote 96.5 0.0058 1.3E-07 67.8 7.3 83 694-784 55-142 (365)
30 KOG3357 Uncharacterized conser 95.8 0.013 2.7E-07 56.8 4.8 89 654-749 23-121 (167)
31 PF05773 RWD: RWD domain; Int 91.7 0.33 7.1E-06 45.1 5.5 68 661-729 4-73 (113)
32 PF14462 Prok-E2_E: Prokaryoti 89.7 2.7 5.8E-05 41.2 9.8 80 694-778 29-120 (122)
33 smart00591 RWD domain in RING 89.6 1.4 3.1E-05 40.6 7.6 27 703-729 39-65 (107)
34 KOG1999 RNA polymerase II tran 80.5 7.7 0.00017 49.1 9.8 81 57-139 407-496 (1024)
35 PF15057 DUF4537: Domain of un 79.8 13 0.00029 36.4 9.5 103 334-474 1-113 (124)
36 PRK03174 sspH acid-soluble spo 69.5 5.1 0.00011 34.5 3.2 34 356-394 26-59 (59)
37 PF14457 Prok-E2_A: Prokaryoti 65.4 7.3 0.00016 40.0 4.0 63 709-778 57-125 (162)
38 TIGR02861 SASP_H small acid-so 48.8 20 0.00043 30.9 3.2 33 356-393 26-58 (58)
39 PF08141 SspH: Small acid-solu 48.6 21 0.00046 30.7 3.4 33 356-393 26-58 (58)
40 PRK01625 sspH acid-soluble spo 47.1 21 0.00044 30.9 3.0 33 356-393 26-58 (59)
41 PF15057 DUF4537: Domain of un 38.5 1.2E+02 0.0025 29.9 7.3 70 298-374 24-99 (124)
42 PRK04192 V-type ATP synthase s 38.1 91 0.002 38.4 7.7 71 56-126 57-142 (586)
43 PF09765 WD-3: WD-repeat regio 36.2 44 0.00095 37.6 4.4 90 657-778 98-187 (291)
44 PRK10334 mechanosensitive chan 30.5 62 0.0013 36.2 4.4 38 52-93 124-162 (286)
45 cd00421 intradiol_dioxygenase 29.4 60 0.0013 32.6 3.7 25 703-727 64-89 (146)
46 cd04721 BAH_plant_1 BAH, or Br 28.4 83 0.0018 31.1 4.4 43 327-375 4-49 (130)
47 COG1862 YajC Preprotein transl 28.4 98 0.0021 29.4 4.6 39 105-143 41-81 (97)
48 PF00924 MS_channel: Mechanose 26.2 69 0.0015 33.1 3.7 39 52-94 55-94 (206)
49 smart00739 KOW KOW (Kyprides, 25.6 86 0.0019 21.8 3.0 24 58-81 2-26 (28)
50 smart00743 Agenet Tudor-like d 25.3 1.9E+02 0.004 24.2 5.5 57 330-396 2-58 (61)
51 PF00924 MS_channel: Mechanose 25.1 1.1E+02 0.0024 31.5 5.0 40 104-143 57-97 (206)
52 PF08940 DUF1918: Domain of un 24.7 94 0.002 26.9 3.4 29 440-468 20-53 (58)
53 cd04713 BAH_plant_3 BAH, or Br 24.4 98 0.0021 31.2 4.2 45 326-375 16-63 (146)
54 PRK05886 yajC preprotein trans 24.1 1.2E+02 0.0027 29.3 4.6 40 105-144 36-77 (109)
55 KOG0309 Conserved WD40 repeat- 23.6 2.2E+02 0.0048 35.9 7.5 70 658-729 420-491 (1081)
56 TIGR00739 yajC preprotein tran 23.4 1.7E+02 0.0037 26.9 5.1 38 106-143 36-75 (84)
57 cd03457 intradiol_dioxygenase_ 23.2 84 0.0018 33.1 3.6 26 703-728 85-110 (188)
58 COG0668 MscS Small-conductance 23.2 1.2E+02 0.0026 33.2 5.0 42 51-95 141-183 (316)
59 COG3264 Small-conductance mech 22.5 1.2E+02 0.0025 38.8 5.1 47 51-103 654-702 (835)
60 cd03459 3,4-PCD Protocatechuat 22.4 97 0.0021 31.8 3.8 25 704-728 72-101 (158)
61 PRK06531 yajC preprotein trans 22.3 1.3E+02 0.0028 29.4 4.3 38 105-143 34-75 (113)
62 KOG4018 Uncharacterized conser 21.7 1.6E+02 0.0034 31.8 5.2 22 706-727 50-71 (215)
63 PRK13922 rod shape-determining 21.5 5.4E+02 0.012 28.2 9.7 89 34-129 122-245 (276)
64 PRK05585 yajC preprotein trans 21.1 1.7E+02 0.0036 28.2 4.8 39 105-143 50-90 (106)
65 PRK09993 C-lysozyme inhibitor; 20.5 2.3E+02 0.0049 29.1 5.8 81 303-399 67-152 (153)
66 PRK10334 mechanosensitive chan 20.4 2.1E+02 0.0045 32.1 6.2 39 105-143 127-166 (286)
67 TIGR02760 TraI_TIGR conjugativ 20.2 3E+02 0.0066 38.9 8.8 103 97-209 671-784 (1960)
68 PF00467 KOW: KOW motif; Inte 20.0 1.3E+02 0.0029 22.3 3.1 23 60-82 1-24 (32)
No 1
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-77 Score=706.42 Aligned_cols=819 Identities=29% Similarity=0.332 Sum_probs=599.9
Q ss_pred CCCCcEEEEecCCccccccCCceEEeecccCCCCeeeecCCCCCCcEEEEEEe---EEEEEEecCceeee-c-CCccccc
Q 002570 29 LYGGQATSILSSLEESIGKIDDFLSFDRGFTHGDIVRSVTDPSGQMGRVININ---MLVDLEGIPGYIIK-D-VNSKNIL 103 (906)
Q Consensus 29 l~~g~vr~~w~~g~e~i~~e~~l~LvDR~f~~GDvVr~~~d~~gQ~G~V~~V~---v~vdL~~~~g~vi~-~-V~s~~L~ 103 (906)
...+.+++-|.+-..++..++.++.-+|.+..++.+...++++++.++|..++ ++++|-.-++.+.+ + .....|.
T Consensus 121 ~~~v~~~v~W~~ns~si~~~~~l~sser~~i~~~~~~~~seats~t~vvq~~~~~~it~dl~~k~~a~y~~~~fst~~l~ 200 (1101)
T KOG0895|consen 121 PTGVPVSVRWTDNSNSIETANSLKSSERLWIALLYLGKASEATSSTNVVQGANAGPITVDLPQKSIAIYKKVLFSTQNLP 200 (1101)
T ss_pred cccCceeeeccccccchhhhcccccccccccccccccccccccCccceeecccccccccccccccccccccchhhcccCC
Confidence 34788999999999999999999999999999999999999999999999999 67777665555555 2 5558889
Q ss_pred cCCCcCCCCEEEeC----Ceee-EEEEEEeeEEEEeCCCCeeEEcccCccccccCCC-CCCCCCCCCcCC--CceeEecc
Q 002570 104 KIRSISVGDFVVLG----AWLG-RVDKVIDSVNIVLDDGSKYEVTAVDHEKLLPISP-SLLEDSQYPYYP--GQRVKVRL 175 (906)
Q Consensus 104 ~i~~~~~GDyVv~g----~WlG-~V~~V~~~v~v~~~dGs~cev~~~d~~~L~~~~~-~~~~d~~~~~yp--GQ~V~~~~ 175 (906)
+...+..|++...+ .||+ ++..+.++..+.+.+++.|.+....+.+|.+++. ++.++..+.+|+ |+....-.
T Consensus 201 ~t~d~~sg~~~~P~~~~~~~i~sr~~~v~e~~~~lv~d~~~~k~~~~~plrl~~i~kf~~~ed~~~~~~~~k~~~~k~hs 280 (1101)
T KOG0895|consen 201 PTPDTVSGTIRRPFPPNYPGIHSRSHVVKDEPYELVPDFSMLKVETEEPLRLDLIPKFKLVEDKSFHHYAKKGKSSKPHS 280 (1101)
T ss_pred CCCCccccccCCCCCCcccchhccccccccccccccccccccccccccCccccchhhhccccccccccccccCCCCCccc
Confidence 99999999999988 9999 9999999999999999999999889999887664 455677888898 99999988
Q ss_pred Ccc-cccccccCCCCCcceeeEEEEEEee---EEEEEEEEeeccCCCCCCCCCCCccCCcCCceeccccccccccC-Cee
Q 002570 176 STV-KSVSWLCGTGRENQVEGTVCKVDAG---LVYVDWLASALMGSDLNLAAPPRLQDSKNLTLLSGFSHANWQLG-DWC 250 (906)
Q Consensus 176 ~~~-~~~~Wl~g~~~~~~~~gtV~~V~~~---~v~V~W~a~~~~g~~~~~~~P~~~~d~~~L~~l~~f~~~~~qlg-D~~ 250 (906)
++. ++.+|..+.|.+..++|+++....+ .+.+.|++.........+ -+..+|-|. ++..++.|+.|+.| ++|
T Consensus 281 ~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~gl-f~Fdiq~P~--~yPa~pp~v~~lt~~~~R 357 (1101)
T KOG0895|consen 281 KNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGL-FLFDIQFPD--TYPAVPPHVKYLTGGGVR 357 (1101)
T ss_pred hhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCc-eeeEeecCC--CCCCCCceeEEeecccee
Confidence 888 9999999999999999988877766 999999998732221111 234456665 89999999999999 999
Q ss_pred eccCCCCcccCCcccccCCCCCchhhcccccccCCCCCCCceEEEEeEEEEEEEEeCCCceeeCcCCCceeecccCCCcc
Q 002570 251 MLPTADDKVITEPTFINSSTCDNKKLERGLRRRNPGSSLAEVFVIVKTKTKFDVVWQDGSCSVGLDSQALLPVNVVNSHE 330 (906)
Q Consensus 251 ~l~~~~~k~~~~~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~V~~t~T~vdV~WQDGt~~~~i~st~L~P~~~lddhE 330 (906)
++|.--.. | ...+-+..|+|-. .|++++-.....++.|++|+++..+|
T Consensus 358 ~nPNlYn~--------------------G----------KVcLslLgTwtg~--~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 358 LNPNLYND--------------------G----------KVCLSLLGTWTGS--RREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred ecCCcccC--------------------c----------eEEeeeeeecccc--cccCCCccccchhhhhhhhhhhhccc
Confidence 99873100 0 0111222344444 99999999889999999999999999
Q ss_pred cCCCcEEEecCCC---CCC-------------------------------------------------------------
Q 002570 331 FWPDQFVLEKGIS---DDP------------------------------------------------------------- 346 (906)
Q Consensus 331 f~PGd~V~~k~~~---~~~------------------------------------------------------------- 346 (906)
+||.++-..... +++
T Consensus 406 -~Py~ne~ga~~~~~~a~~~qvs~cv~~~aii~vl~~~~~~Irrpp~~fe~~vqeh~s~~~~~vvievs~y~a~~tl~~~ 484 (1101)
T KOG0895|consen 406 -EPYFNEPGALQKRTSADPYQVSKCVSEEAIIEVLPMMVYEIRRPPEPFESTVQEHYSSREHDVVIEVSAYRAGATLGAK 484 (1101)
T ss_pred -CcccccccccccccCCCccccccccccchhhhhhhhhhhhhcCCccccchHHhhhhcccchhhhhhhhhcccCcChhhc
Confidence 999876433211 110
Q ss_pred ----------------------------------------CCCCCCceEEEEeecCCCCEEE-EEccccCCCC--CCCCe
Q 002570 347 ----------------------------------------HIPSGQRWGVVQGVDAKERTVT-VQWRAKANSD--SDANQ 383 (906)
Q Consensus 347 ----------------------------------------~~~~~~~~GVVqsvd~~eRta~-V~W~~~~~~~--~~~~e 383 (906)
.+...++=|+.+++++.-|+.+ .+|+.....- +...+
T Consensus 485 ~~~~p~~r~ea~gs~~~~~~~dL~~~~Eq~leee~~~~gels~gs~~sg~~ss~na~~rs~~~t~~~t~ldra~eps~~~ 564 (1101)
T KOG0895|consen 485 VDGIPSGREEAAGSIELKFPTDLAGFAEQVLEEEFQCLGELSLGSRDSGETSSLNASIRSSKLTRSLTVLDRAFEPSPVE 564 (1101)
T ss_pred CCCcccccccccccccccchhhhhhHHHHHHHhhcccccccccCcCccccccccccccccCcccccccccccccCCcccc
Confidence 0004456778888888888887 7777654322 22222
Q ss_pred eeeeeeecccCCCCccccCcEEEEeccCCcccccc--------ccccCC-CCC-CcCCCCCCCCCCCcceEEeeecCCcE
Q 002570 384 SEVSAYELVEHPDYSYCYGDVVFKLVQNQFGMCKD--------AALEGT-ISD-WEQNDCPDTHYSSCIGIVTGFKDGAV 453 (906)
Q Consensus 384 E~VSvYel~~hpd~~~~~Gd~Vir~~~~~~~~~~~--------~~~~~~-~~~-~~~~~~~~~~~~s~~G~V~~~~dG~v 453 (906)
+.-.+ ..||++.+++||.|+++.........+ ..+.|- .+. ..+..+...+..+|++...++..|..
T Consensus 565 kkd~~---~~e~~~~~~i~~~l~~lS~~~~al~~s~~tq~~~e~~~kg~p~~~~e~~~~~~~~t~~s~~~~~s~~~~~~~ 641 (1101)
T KOG0895|consen 565 KKDGV---ALEPGRDHLILDCLSDLSKHSPALPRSSVTQFFPELSFKGNPTCTEEQQLEPATGTGFSTGSTASGLDVEQE 641 (1101)
T ss_pred hhhcc---ccCCCcccceeeehhhcccccccccCCcccccHHHHhhcCCCcCChhhcccccccccccccccccceeeccc
Confidence 22222 899999999999999998765311000 111111 011 11222333366889999999999999
Q ss_pred EEEecCCceeeeeccceeeeeeccCCCCCCCCCCCCchhhhhhh-cCC-CCCCCCC-----CCCCCCCCCCCCCCCCCCC
Q 002570 454 EVRWATGFTTKVGPNEIYGVEKYEGSATTPGTNEGNIEELNREL-HGK-QYSSHGG-----ENLPSFDGSGEGCKKYPWE 526 (906)
Q Consensus 454 ~V~w~~g~~s~v~p~~l~~v~~~~~~~~~~~~~e~~~~~~~wet-~d~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 526 (906)
.|.|.+|..|+|.|.-+|..+ .+.++....+.+. .+-.+|++ .++ ..-...+ .+.+.........+...-.
T Consensus 642 ~~~~~~~~~stv~p~~~~~~g-d~~s~~~~~~~~~-~~~~s~~~~~~e~~~~~~~~~~~l~~s~~~~i~~~~~~e~~~~~ 719 (1101)
T KOG0895|consen 642 LVKQRDGTASTVNPVVSYVNG-DAQSEHETGGVES-SALPSWLLLLREQRCLIEAMSSYLRRSSVLDIANHVPNELGELL 719 (1101)
T ss_pred cccccCCccCccCCeeEEecC-CCcchhhhcceeh-hhccccchhhhhhccCchhHHHHHhHHHHHHHhccCCcccchhh
Confidence 999999999999999999887 2222222222211 11245776 222 1110000 0000000011100000011
Q ss_pred CccchhhhhhhccccccccccccCCCCCCCCCCCCCCCCCCCCc--------------hhhhhhHHHHhhhhccCCCCCC
Q 002570 527 SSSFSLACAAIGFFTSIVTSLFGPLGSTSQSDSVSSGHIPEDAN--------------ETEILLEKEVFEAKNICCEPHP 592 (906)
Q Consensus 527 ~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~e~~~ 592 (906)
....+.+.++|.+.+.+.+++| +++.+.+..+.+.-.+ .-++ +.-+..+.++.+.|++..-..
T Consensus 720 ~~~~~~~~~ti~~~~~~~s~~~-~~~~~~v~~~~~y~~i-k~~~~~~~~~~~~~~~~~e~~s~~~~~i~~~~e~~~~~a- 796 (1101)
T KOG0895|consen 720 RGIASLNLETIEFQSELQSSVF-TRLAKMVTCVDTYTNI-KRENVKTGVKPDASKQEPEDLSLLKPDIQKTAEIVYASA- 796 (1101)
T ss_pred cccccCCcchhhHHHHHHHHHH-hhhhhhhhhhhceeee-cceeeecccCCCccccCccccchhhhHHHHHHHHhhhhh-
Confidence 2333346678888888888887 5554443322211111 1100 000111111222221110000
Q ss_pred ccccccccccccccccCCcchhhhhhhccccCCCCCCCceeecCCCCCccccccccCcccccchHHHHHHHHHHHHHHHh
Q 002570 593 SELQTRGKTNLIQEVEEDPEKEEFKAFTACENSEDQFRQFDMVSDSSDHHFLGASKGLALSQVKRAWVKKVQQEWSILEK 672 (906)
Q Consensus 593 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~dhh~~~~~~~~~~~~~~~~~~kRL~kEl~~L~~ 672 (906)
...+....+.....+..+..-.+.+...-.+|+|+++++||||....... ...+.|++..+.||+.|..
T Consensus 797 --------~~~n~~~~d~~~~l~~~s~~~~~~~d~~~~~F~v~~~~~~~h~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 865 (1101)
T KOG0895|consen 797 --------NQANQLKGDVMKKLAFDSFSVVSEDDDGSLRFDVNYDYMDHHKNANDGNK---AAEAQWAKKVQTEWKILPL 865 (1101)
T ss_pred --------hhhhhhhhhhhchhccCCcccccCCCchhccccccCchHHHhhhhccccc---HHHHHHHHHHHHHHHhhhc
Confidence 00000000111111111100001111122799999999999999654433 3344999999999999999
Q ss_pred cCCCceEEEecCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCcccccccCCCCceecccccCCC
Q 002570 673 SLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLLNTWT 752 (906)
Q Consensus 673 ~~p~gI~v~~~ed~l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i~HPNVy~~GkVCLslL~tw~ 752 (906)
++|.||+||.+|+||++++++|+||.||||++|+|+|+|+||.+||..||.|+|++++.|+|||+|++|+||||||+||+
T Consensus 866 ~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~ 945 (1101)
T KOG0895|consen 866 SLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWH 945 (1101)
T ss_pred cCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCcchhhHHHHHHHHhcCCCCCCCccccccccchhhhhhcHHHHHHHHHHHHHHHHHHHHcCCCccHHHHH
Q 002570 753 GSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGRAEGEKNSVSYNENAFLVTCKSMLYLLHKPPKHFKELV 832 (906)
Q Consensus 753 g~~~e~WsP~~~tl~qVL~sIq~Ll~~p~P~~nEag~e~~~~~~~~~~n~~~Yne~a~~~t~k~m~~~l~~pp~~Fe~~v 832 (906)
|+++|.|+|+ ++|+|||+|||+|+++.+||||||||+.++|+.++++|++.||+++++.+|++|+++|++||+.|+++|
T Consensus 946 g~~~e~w~~~-s~~lq~l~s~q~l~l~~~py~ne~gy~~~~g~~~g~~~s~~y~~~~~~~~~~~~~~~~~~p~~~~~e~i 1024 (1101)
T KOG0895|consen 946 GRGNEVWNPS-SSILQVLVSIQGLVLNEEPYFNEAGYEKQRGTAEGEKNSRVYNENAFLLTCKSMVYQLRKPPKCFEEVI 1024 (1101)
T ss_pred CCCccccCcc-hhHHHHHHHhhhhhcccccccCcccccccccccccccccccccchhHHHHHHHHHHHhhCCcHHHHHHH
Confidence 9999999997 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHhccCccCCCCCCCCC--CCCCCCCChhHHHHHHHHHHHHHHHHHhCCCCcccccC
Q 002570 833 EEHFSQRCKYILLACKAYMEGAAVGTASGCKEN--GENSNGCSVGFKIMLAKLFPKLVEAFSSKGIDCNQFIE 903 (906)
Q Consensus 833 ~~hf~~~~~~il~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~f~~~l~~~~~~l~~~~~~~g~~~~~~~~ 903 (906)
++||+.++..|+++|++|+++.+.|+..+.... ....+..+.+|+.+|.++...+.-++.+.|++|..+++
T Consensus 1025 ~~Hf~~~~~ei~~~c~a~~~~~~~~s~~k~~v~d~~~a~ks~s~~~k~~l~~~~~~~~~~~~~~~a~~~~~~~ 1097 (1101)
T KOG0895|consen 1025 HKHFYLRGVEIMAACEAWIAGILQGSSDKRVVSDHAAALKSHSAQFKEELLKLPCPEGLAPDTVGAPEVCEAT 1097 (1101)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchhcccccchhhhhHHHHhccchhhhhhhhhCCcccccchhhcCchhhhhcc
Confidence 999999999999999999999999998887754 34456789999999999999999999999998876654
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-36 Score=289.70 Aligned_cols=143 Identities=29% Similarity=0.559 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCcccccccCC
Q 002570 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYE 739 (906)
Q Consensus 660 ~kRL~kEl~~L~~~~p~gI~v~~~ed~l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i~HPNVy~ 739 (906)
.+||+||++.|++.+|+||.+.+.++|++.|+|+|.||.|||||||.|+++|+||++||++||+|+|+|+ ||||||+.
T Consensus 3 ~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~Tk--IyHPNI~~ 80 (148)
T KOG0417|consen 3 SKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTK--IYHPNIDS 80 (148)
T ss_pred HHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecc--cccCCcCc
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCceecccccCCCCCCCCccCCCCcchhhHHHHHHHHhcCCCCCCCccccccccch--hhhhhcHHHHHHHHHHHHHHHH
Q 002570 740 SGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGR--AEGEKNSVSYNENAFLVTCKSM 817 (906)
Q Consensus 740 ~GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll~~p~P~~nEag~e~~~~~--~~~~~n~~~Yne~a~~~t~k~m 817 (906)
.|.|||+||+ .+|+|+ ++|..||+||++||.+|||. +++... ..++.+...|+++||.+|.+++
T Consensus 81 ~G~IclDILk-------~~WsPA-l~i~~VllsI~sLL~~Pnpd------dPL~~~ia~~~k~d~~~~~~~ARewt~kyA 146 (148)
T KOG0417|consen 81 NGRICLDILK-------DQWSPA-LTISKVLLSICSLLSDPNPD------DPLVPDIAELYKTDRAKYERTAREWTRKYA 146 (148)
T ss_pred cccchHHhhh-------ccCChh-hHHHHHHHHHHHHhcCCCCC------ccccHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 9999999999 679999 99999999999999999986 555544 5677899999999999999887
Q ss_pred H
Q 002570 818 L 818 (906)
Q Consensus 818 ~ 818 (906)
.
T Consensus 147 ~ 147 (148)
T KOG0417|consen 147 M 147 (148)
T ss_pred c
Confidence 4
No 3
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-35 Score=350.27 Aligned_cols=266 Identities=43% Similarity=0.752 Sum_probs=236.7
Q ss_pred CCCceeecCCCCCccccccccCcccccchHHHHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEEcCCCCCCCCCEE
Q 002570 628 QFRQFDMVSDSSDHHFLGASKGLALSQVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLF 707 (906)
Q Consensus 628 ~~~~f~~~~~~~dhh~~~~~~~~~~~~~~~~~~kRL~kEl~~L~~~~p~gI~v~~~ed~l~~w~~~I~GP~~TPYegG~F 707 (906)
.++.|.++++..+|||++.... ..+.++.|.+|+++|++.+.+++|+||++++.+.||++++++|+||.||||++|+|
T Consensus 254 ~i~kf~~~ed~~~~~~~~k~~~--~k~hs~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf 331 (1101)
T KOG0895|consen 254 LIPKFKLVEDKSFHHYAKKGKS--SKPHSKNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLF 331 (1101)
T ss_pred chhhhccccccccccccccCCC--CCccchhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCce
Confidence 6889999999999999954322 23788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCCCCCCccEEecC-CcccccccCCCCceecccccCCCCCCCCccCCCCcchhhHHHHHHHHhcCCCCCCCc
Q 002570 708 FFDIFLPPEYPHEPPLVHYISG-GLRVNPNLYESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNE 786 (906)
Q Consensus 708 ~fdI~fP~~YP~~PP~V~f~t~-~~i~HPNVy~~GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll~~p~P~~nE 786 (906)
.|+|+||..||..||.|+|+|+ .+|++||+|.+|+|||++|+||.|...+.|+|..++|+|+|++||.|+.+.+||+||
T Consensus 332 ~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e~Py~ne 411 (1101)
T KOG0895|consen 332 LFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNEEPYFNE 411 (1101)
T ss_pred eeEeecCCCCCCCCceeEEeeccceeecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcccCccccc
Confidence 9999999999999999999998 889999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhhhcHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhHHHHHHHHHHHhccCccCCCCCCCCC-
Q 002570 787 AGYDKQIGRAEGEKNSVSYNENAFLVTCKSMLYLLHKPPKHFKELVEEHFSQRCKYILLACKAYMEGAAVGTASGCKEN- 865 (906)
Q Consensus 787 ag~e~~~~~~~~~~n~~~Yne~a~~~t~k~m~~~l~~pp~~Fe~~v~~hf~~~~~~il~~~~~~~~~~~~~~~~~~~~~- 865 (906)
|++....+.+.....++.|.++++......|++.+++||..|+..+++||..+.+.++.+|.+|..++..|...+....
T Consensus 412 ~ga~~~~~~a~~~qvs~cv~~~aii~vl~~~~~~Irrpp~~fe~~vqeh~s~~~~~vvievs~y~a~~tl~~~~~~~p~~ 491 (1101)
T KOG0895|consen 412 PGALQKRTSADPYQVSKCVSEEAIIEVLPMMVYEIRRPPEPFESTVQEHYSSREHDVVIEVSAYRAGATLGAKVDGIPSG 491 (1101)
T ss_pred ccccccccCCCccccccccccchhhhhhhhhhhhhcCCccccchHHhhhhcccchhhhhhhhhcccCcChhhcCCCcccc
Confidence 9999999999999999999999998888999999999999999999999999999999999999988887765543332
Q ss_pred -CCCCCCCChhHHHHHHHHHHHHHH-HHHhCC
Q 002570 866 -GENSNGCSVGFKIMLAKLFPKLVE-AFSSKG 895 (906)
Q Consensus 866 -~~~~~~~s~~f~~~l~~~~~~l~~-~~~~~g 895 (906)
.......+..|+..|..+.+++.. .+...|
T Consensus 492 r~ea~gs~~~~~~~dL~~~~Eq~leee~~~~g 523 (1101)
T KOG0895|consen 492 REEAAGSIELKFPTDLAGFAEQVLEEEFQCLG 523 (1101)
T ss_pred cccccccccccchhhhhhHHHHHHHhhccccc
Confidence 223334555677777777777555 344443
No 4
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-34 Score=286.32 Aligned_cols=142 Identities=31% Similarity=0.515 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecCC-CcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCccccccc
Q 002570 659 WVKKVQQEWSILEKSLPETIYVRIFED-RVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNL 737 (906)
Q Consensus 659 ~~kRL~kEl~~L~~~~p~gI~v~~~ed-~l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i~HPNV 737 (906)
+.+||++|++.|++++|.+|.+.+..+ ++..|.++|.||++||||||.|++.|.||.+||++||+|+|.|+ +|||||
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~--i~HPNV 83 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTK--IFHPNV 83 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccC--CcCCCc
Confidence 789999999999999999999998887 99999999999999999999999999999999999999999999 999999
Q ss_pred CCCCceecccccCCCCCCCCccCCCCcchhhHHHHHHHHhcCCCCC---CCccccccccchhhhhhcHHHHHHHHHHHHH
Q 002570 738 YESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPY---FNEAGYDKQIGRAEGEKNSVSYNENAFLVTC 814 (906)
Q Consensus 738 y~~GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll~~p~P~---~nEag~e~~~~~~~~~~n~~~Yne~a~~~t~ 814 (906)
|.+|+|||+||+ +.|+|+ ++|.+||++||+||.+|||. +.||| ..+.++...|+++++.++.
T Consensus 84 ~~~G~vCLdIL~-------~~WsP~-~~l~sILlsl~slL~~PN~~~Pln~daa-------~~~~~d~~~y~~~vr~~~~ 148 (153)
T COG5078 84 DPSGNVCLDILK-------DRWSPV-YTLETILLSLQSLLLSPNPDSPLNTEAA-------TLYREDKEEYEKKVREWVK 148 (153)
T ss_pred CCCCCChhHHHh-------CCCCcc-ccHHHHHHHHHHHHcCCCCCCCCChHHH-------HHHHhCHHHHHHHHHHHHH
Confidence 999999999999 799999 99999999999999998753 33332 5667889999999999887
Q ss_pred HHH
Q 002570 815 KSM 817 (906)
Q Consensus 815 k~m 817 (906)
+++
T Consensus 149 ~~~ 151 (153)
T COG5078 149 KYA 151 (153)
T ss_pred Hhc
Confidence 765
No 5
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=2.5e-32 Score=271.56 Aligned_cols=146 Identities=28% Similarity=0.473 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCcccccccC
Q 002570 659 WVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLY 738 (906)
Q Consensus 659 ~~kRL~kEl~~L~~~~p~gI~v~~~ed~l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i~HPNVy 738 (906)
..|||++|++.|++++++||.+.+.++|+..|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+ +|||||+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~--i~HPNV~ 80 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTK--IYHPNID 80 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecC--CeeceEC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCceecccccCCCCCCCCccCCCCcchhhHHHHHHHHhcCCCCCCCccccccccchhhhhhcHHHHHHHHHHHHHHHHH
Q 002570 739 ESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGRAEGEKNSVSYNENAFLVTCKSML 818 (906)
Q Consensus 739 ~~GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll~~p~P~~nEag~e~~~~~~~~~~n~~~Yne~a~~~t~k~m~ 818 (906)
.+|.|||++|+ +.|+|+ +||.+||++|++||.+|+|. .|. . ......+.++...|.++|+.++.+++.
T Consensus 81 ~~G~iCl~iL~-------~~W~p~-~ti~~iL~~i~~ll~~P~~~--~pl-n-~~aa~~~~~d~~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 81 KLGRICLDILK-------DKWSPA-LQIRTVLLSIQALLSAPEPD--DPL-D-TSVADHFKNNRADAEKVAREWNQKYAK 148 (152)
T ss_pred CCCeEECccCc-------ccCCCC-CcHHHHHHHHHHHHhCCCCC--Cch-H-HHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 99999999998 789999 99999999999999999874 221 1 122256677888888888888776653
No 6
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.1e-32 Score=255.96 Aligned_cols=143 Identities=24% Similarity=0.478 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCcccccccC
Q 002570 659 WVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLY 738 (906)
Q Consensus 659 ~~kRL~kEl~~L~~~~p~gI~v~~~ed~l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i~HPNVy 738 (906)
+.+||+++++.|++++|.||+..+.++|+..|.++|+||.+|||+||.|++.|.|+++||.+||.|+|.|. .||||||
T Consensus 5 ArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~--mFHPNvy 82 (152)
T KOG0419|consen 5 ARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSK--MFHPNVY 82 (152)
T ss_pred HHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeee--ccCCCcC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCceecccccCCCCCCCCccCCCCcchhhHHHHHHHHhcCCCCCCCccccccccchhhhhhcHHHHHHHHHHHHHH
Q 002570 739 ESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGRAEGEKNSVSYNENAFLVTCK 815 (906)
Q Consensus 739 ~~GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll~~p~P~~nEag~e~~~~~~~~~~n~~~Yne~a~~~t~k 815 (906)
.+|.+||++|. ..|+|. |++..||.|||+||.+|+|. .|+. ..+...+.++.+.|++.++....+
T Consensus 83 a~G~iClDiLq-------NrWsp~-Ydva~ILtsiQslL~dPn~~--sPaN--~eAA~Lf~e~~rey~rrVk~~veq 147 (152)
T KOG0419|consen 83 ADGSICLDILQ-------NRWSPT-YDVASILTSIQSLLNDPNPN--SPAN--SEAARLFSENKREYERRVKETVEQ 147 (152)
T ss_pred CCCcchHHHHh-------cCCCCc-hhHHHHHHHHHHHhcCCCCC--Cccc--HHHHHHHhhChHHHHHHHHHHHHH
Confidence 99999999998 689999 99999999999999999863 2221 122366778888888887765443
No 7
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=99.97 E-value=1.5e-31 Score=264.73 Aligned_cols=144 Identities=28% Similarity=0.523 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCcccccccCC
Q 002570 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYE 739 (906)
Q Consensus 660 ~kRL~kEl~~L~~~~p~gI~v~~~ed~l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i~HPNVy~ 739 (906)
.+||++|++.|+++++.++.+.+.++|+..|+++|.||++|||+||.|+|.|.||++||+.||+|+|.|+ +|||||+.
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPNv~~ 80 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTK--IYHPNINS 80 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecC--cccceECC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCceecccccCCCCCCCCccCCCCcchhhHHHHHHHHhcCCCCCCCccccccccchhhhhhcHHHHHHHHHHHHHHHH
Q 002570 740 SGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGRAEGEKNSVSYNENAFLVTCKSM 817 (906)
Q Consensus 740 ~GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll~~p~P~~nEag~e~~~~~~~~~~n~~~Yne~a~~~t~k~m 817 (906)
+|.|||++|+ +.|+|+ +||.+||++|++||.+|+|. .|. . ......+.++...|.++|+.++.+++
T Consensus 81 ~G~iCl~il~-------~~W~p~-~ti~~il~~i~~ll~~P~~~--~p~-n-~~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 81 NGSICLDILR-------DQWSPA-LTVSKVLLSISSLLTDPNPD--DPL-V-PEIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred CCEEEcccCc-------CCCCCc-CcHHHHHHHHHHHHhCCCCC--Cch-H-HHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 9999999998 789999 99999999999999999874 111 1 11225666788888888888776543
No 8
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.5e-30 Score=253.54 Aligned_cols=176 Identities=28% Similarity=0.462 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHhcC---CCceEEEecCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCccccc
Q 002570 659 WVKKVQQEWSILEKSL---PETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNP 735 (906)
Q Consensus 659 ~~kRL~kEl~~L~~~~---p~gI~v~~~ed~l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i~HP 735 (906)
+++||++|.+++.++. -.||.+....+++..++..|.||+|||||||.|.++|.+|.+|||+||+|+|.|+ ||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~Tk--IwHP 81 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITK--IWHP 81 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeee--eecC
Confidence 6899999999999887 5799999999999999999999999999999999999999999999999999999 9999
Q ss_pred ccC-CCCceecccccCCCCCCCCccCCCCcchhhHHHHHHHHhcCCCCCCCccccccccch--hhhhhcHHHHHHHHHHH
Q 002570 736 NLY-ESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGR--AEGEKNSVSYNENAFLV 812 (906)
Q Consensus 736 NVy-~~GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll~~p~P~~nEag~e~~~~~--~~~~~n~~~Yne~a~~~ 812 (906)
||. .+|.|||++|. ..|.++ .||..+|+|||+||..|+|. +++.+. ..+..|...|...|+.|
T Consensus 82 nVSs~tGaICLDilk-------d~Wa~s-lTlrtvLislQalL~~pEp~------dPqDavva~qy~~n~~~F~~TAr~W 147 (200)
T KOG0418|consen 82 NVSSQTGAICLDILK-------DQWAAS-LTLRTVLISLQALLCAPEPK------DPQDAVVAEQYVDNYEMFYKTARYW 147 (200)
T ss_pred CCCcccccchhhhhh-------cccchh-hhHHHHHHHHHHHHcCCCCC------ChHHHHHHHHHhhhHHHHHHHHHHH
Confidence 995 79999999999 799999 99999999999999999996 565554 56778999999999999
Q ss_pred HHHHHHHHHcCCC---ccHHHHHHHHHHHhHHHHHHHHHHH
Q 002570 813 TCKSMLYLLHKPP---KHFKELVEEHFSQRCKYILLACKAY 850 (906)
Q Consensus 813 t~k~m~~~l~~pp---~~Fe~~v~~hf~~~~~~il~~~~~~ 850 (906)
+..++..-+...| +.-..++...|++........++.|
T Consensus 148 T~~fA~~~~~~~~~~~~~v~~l~~mGf~~~~~i~~L~~~~w 188 (200)
T KOG0418|consen 148 TTEFAGGRLPDDPWDKKKVDSLIEMGFSELEAILVLSGSDW 188 (200)
T ss_pred HHHHhCCCCCCCchhHHHHHHHHHhcccHHHHHHHhhcccc
Confidence 9887755322211 2345566666666555444445555
No 9
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.7e-29 Score=240.15 Aligned_cols=150 Identities=25% Similarity=0.394 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecC-CCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCccccccc
Q 002570 659 WVKKVQQEWSILEKSLPETIYVRIFE-DRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNL 737 (906)
Q Consensus 659 ~~kRL~kEl~~L~~~~p~gI~v~~~e-d~l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i~HPNV 737 (906)
...-|+++|+.|++++.+|+.+...+ .+++.|.+.|+||++|+|+||.|+-.+.||.+||..||+++|.|. +|||||
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~--mwHPNv 83 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSK--MWHPNV 83 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehh--hcCCCc
Confidence 45678889999999999999998754 589999999999999999999999999999999999999999999 999999
Q ss_pred CCCCceecccccCCC------CCCCCccCCCCcchhhHHHHHHHHhcCCC---CCCCccccccccchhhhhhcHHHHHHH
Q 002570 738 YESGKVCLSLLNTWT------GSGTEVWNPGGSTILQVLLSLQALVLNEK---PYFNEAGYDKQIGRAEGEKNSVSYNEN 808 (906)
Q Consensus 738 y~~GkVCLslL~tw~------g~~~e~WsP~~~tl~qVL~sIq~Ll~~p~---P~~nEag~e~~~~~~~~~~n~~~Yne~ 808 (906)
|++|+||+|||..-- +..+|.|+|. .|+++||+||.+||..|| |.|-+| ..++++|.++|.++
T Consensus 84 y~~G~vCISILH~pgdD~~gyE~~~erW~Pv-~tvetIllSiIsmL~~PN~~SPANVDA-------a~~~Ren~~Eykkk 155 (171)
T KOG0425|consen 84 YEDGDVCISILHPPGDDPSGYELPSERWLPV-QTVETILLSIISMLNSPNDESPANVDA-------AKEWRENPEEYKKK 155 (171)
T ss_pred CCCCCEEEEeecCCCCCcccCCChhhccCCc-cchhHhHHHHHHHHcCCCCCCccchHH-------HHHHhhCHHHHHHH
Confidence 999999999997521 2457899999 999999999999999886 554444 36677888999999
Q ss_pred HHHHHHHHHH
Q 002570 809 AFLVTCKSML 818 (906)
Q Consensus 809 a~~~t~k~m~ 818 (906)
++.+++++..
T Consensus 156 V~r~vr~s~e 165 (171)
T KOG0425|consen 156 VRRCVRRSQE 165 (171)
T ss_pred HHHHHHHHHH
Confidence 9888876543
No 10
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.4e-29 Score=233.36 Aligned_cols=154 Identities=23% Similarity=0.406 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEEe-cCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCccccc
Q 002570 657 RAWVKKVQQEWSILEKSLPETIYVRI-FEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNP 735 (906)
Q Consensus 657 ~~~~kRL~kEl~~L~~~~p~gI~v~~-~ed~l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i~HP 735 (906)
..++|||++|+++|..++|+||.+.+ .|+|++.|.|+|.||++|||+||+|--.+.||.+||..||+++|... +|||
T Consensus 3 ~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~--~fHP 80 (165)
T KOG0426|consen 3 GTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCE--MFHP 80 (165)
T ss_pred hhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecc--cccC
Confidence 45789999999999999999999876 68899999999999999999999999999999999999999999998 9999
Q ss_pred ccCCCCceecccccCCC------CCCCCccCCCCcchhhHHHHHHHHhcCCCCCCCccccccccchhhhhhcHHHHHHHH
Q 002570 736 NLYESGKVCLSLLNTWT------GSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGRAEGEKNSVSYNENA 809 (906)
Q Consensus 736 NVy~~GkVCLslL~tw~------g~~~e~WsP~~~tl~qVL~sIq~Ll~~p~P~~nEag~e~~~~~~~~~~n~~~Yne~a 809 (906)
|||.+|+||+|||..-- ...+|.|+|. .++..||+|+.+||..||- |.| .+..+.....+++.+|++.+
T Consensus 81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPV-QSvEKILLSV~SMLaEPNd---ESg-ANvdA~~mWRe~R~ef~~i~ 155 (165)
T KOG0426|consen 81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPV-QSVEKILLSVVSMLAEPND---ESG-ANVDACKMWREDREEFEKIA 155 (165)
T ss_pred cccCCCeEEEEEeeCCCCCCccchhhhhcCChH-HHHHHHHHHHHHHHcCCCc---ccC-cccHHHHHHHHhHHHHHHHH
Confidence 99999999999998532 1236899999 9999999999999988764 332 12233466778888899888
Q ss_pred HHHHHHHH
Q 002570 810 FLVTCKSM 817 (906)
Q Consensus 810 ~~~t~k~m 817 (906)
+..++|+.
T Consensus 156 ~~lvrKtL 163 (165)
T KOG0426|consen 156 KRLVRKTL 163 (165)
T ss_pred HHHHHHhh
Confidence 88777653
No 11
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.96 E-value=9.6e-29 Score=241.93 Aligned_cols=138 Identities=33% Similarity=0.608 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhcCCCceEEEecCC-CcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCcccccccCCC
Q 002570 662 KVQQEWSILEKSLPETIYVRIFED-RVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYES 740 (906)
Q Consensus 662 RL~kEl~~L~~~~p~gI~v~~~ed-~l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i~HPNVy~~ 740 (906)
||++|++.|+++++.||.+.+.++ ++..|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+ +|||||+.+
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~--i~HPni~~~ 78 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTP--IFHPNIDEN 78 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS---SBTTB-TT
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccc--ccccccccc
Confidence 899999999999999999999887 99999999999999999999999999999999999999999999 999999999
Q ss_pred CceecccccCCCCCCCCccCCCCcchhhHHHHHHHHhcCCCCCCCccccccccchhhhhhcHHHHHHHHHHH
Q 002570 741 GKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGRAEGEKNSVSYNENAFLV 812 (906)
Q Consensus 741 GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll~~p~P~~nEag~e~~~~~~~~~~n~~~Yne~a~~~ 812 (906)
|+||+++|+. +.|+|. ++|.+||.+|++||..|++. .|. . ......+.++.+.|.++|+.+
T Consensus 79 G~icl~~l~~------~~W~p~-~~i~~il~~i~~ll~~p~~~--~~~-n-~~a~~~~~~~~~~f~~~~~~~ 139 (140)
T PF00179_consen 79 GRICLDILNP------ESWSPS-YTIESILLSIQSLLSEPNPE--DPL-N-EEAAELYKNDREEFEKKAREW 139 (140)
T ss_dssp SBBGHGGGTT------TTC-TT-SHHHHHHHHHHHHHHSTCTT--STS-S-HHHHHHHHHCHHHHHHHHHHH
T ss_pred ccchhhhhhc------ccCCcc-cccccHHHHHHHHHhCCCCC--Ccc-h-HHHHHHHHHCHHHHHHHHHHc
Confidence 9999999984 469998 99999999999999877542 111 1 122255667788888888765
No 12
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-27 Score=228.59 Aligned_cols=148 Identities=26% Similarity=0.433 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEecC-----CCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCcc
Q 002570 658 AWVKKVQQEWSILEKSLPETIYVRIFE-----DRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLR 732 (906)
Q Consensus 658 ~~~kRL~kEl~~L~~~~p~gI~v~~~e-----d~l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i 732 (906)
..+.||+.|-+.+.++.|-|+++++.. .++..|.|.|.||+|||||||.|.+.+.||.+||..||+++|.++ .
T Consensus 4 ~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p--l 81 (158)
T KOG0424|consen 4 IALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP--L 81 (158)
T ss_pred hHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC--C
Confidence 347899999999999999999998754 368899999999999999999999999999999999999999999 9
Q ss_pred cccccCCCCceecccccCCCCCCCCccCCCCcchhhHHHHHHHHhcCCCCCCCccccccccchhhhhhcHHHHHHHHHHH
Q 002570 733 VNPNLYESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGRAEGEKNSVSYNENAFLV 812 (906)
Q Consensus 733 ~HPNVy~~GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll~~p~P~~nEag~e~~~~~~~~~~n~~~Yne~a~~~ 812 (906)
||||||.+|.||||||+. ...|+|+ .||.|||+.||.||..||+. .||.. .+-..+.+++..|.++++..
T Consensus 82 ~HPNVypsgtVcLsiL~e-----~~~W~pa-itikqiL~gIqdLL~~Pn~~--~pAq~--eA~~~~~~~r~eYekrvr~q 151 (158)
T KOG0424|consen 82 FHPNVYPSGTVCLSILNE-----EKDWRPA-ITIKQILLGIQDLLDTPNIT--SPAQT--EAYTIYCQDRAEYEKRVRAQ 151 (158)
T ss_pred cCCCcCCCCcEehhhhcc-----ccCCCch-hhHHHHHHHHHHHhcCCCCC--Cchhh--HHHHHHhhCHHHHHHHHHHH
Confidence 999999999999999993 1349999 99999999999999999873 34322 22356778888999988887
Q ss_pred HHHHH
Q 002570 813 TCKSM 817 (906)
Q Consensus 813 t~k~m 817 (906)
+.+++
T Consensus 152 ak~~a 156 (158)
T KOG0424|consen 152 AKEYA 156 (158)
T ss_pred HHHhc
Confidence 76543
No 13
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.95 E-value=2.1e-27 Score=232.84 Aligned_cols=139 Identities=33% Similarity=0.548 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCcccccccCCC
Q 002570 661 KKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYES 740 (906)
Q Consensus 661 kRL~kEl~~L~~~~p~gI~v~~~ed~l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i~HPNVy~~ 740 (906)
|||++|++.|+++++.|+++.+.++++..|+++|.||++|||+||.|.|.|.||++||++||+|+|.++ ++||||+.+
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~--i~HpnV~~~ 79 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTK--IYHPNVDEN 79 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCC--cccCCCCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred CceecccccCCCCCCCCccCCCCcchhhHHHHHHHHhcCCCCCCCccccccccchhhhhhcHHHHHHHHHHH
Q 002570 741 GKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGRAEGEKNSVSYNENAFLV 812 (906)
Q Consensus 741 GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll~~p~P~~nEag~e~~~~~~~~~~n~~~Yne~a~~~ 812 (906)
|.||+++|.. ..|+|+ ++|.+||.+|+++|.+|++ ..|.. ..+...++++.+.|+++|+.+
T Consensus 80 G~icl~~l~~------~~W~p~-~~l~~il~~i~~~l~~p~~--~~~~n--~~aa~~~~~~~~~f~~~~~~~ 140 (141)
T cd00195 80 GKICLSILKT------HGWSPA-YTLRTVLLSLQSLLNEPNP--SDPLN--AEAAKLYKENREEFKKKAREW 140 (141)
T ss_pred CCCchhhcCC------CCcCCc-CcHHHHHHHHHHHHhCCCC--CCchh--HHHHHHHHHCHHHHHHHHHHh
Confidence 9999999984 259999 9999999999999997665 23321 223355556667777666553
No 14
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.95 E-value=4.5e-27 Score=231.57 Aligned_cols=143 Identities=33% Similarity=0.538 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCC-CcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCcccccccCC
Q 002570 661 KKVQQEWSILEKSLPETIYVRIFED-RVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYE 739 (906)
Q Consensus 661 kRL~kEl~~L~~~~p~gI~v~~~ed-~l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i~HPNVy~ 739 (906)
+||++|++.|+++++.|+.+.+.++ ++..|+++|.||++|||+||.|.|.|.||++||+.||+|+|.++ +||||||.
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~--i~Hp~i~~ 78 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITK--IYHPNVDS 78 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCC--ceEeeECC
Confidence 5999999999999999999988776 99999999999999999999999999999999999999999999 99999999
Q ss_pred CCceecccccCCCCCCCCccCCCCcchhhHHHHHHHHhcCCCCCCCccccccccchhhhhhcHHHHHHHHHHHHHHH
Q 002570 740 SGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGRAEGEKNSVSYNENAFLVTCKS 816 (906)
Q Consensus 740 ~GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll~~p~P~~nEag~e~~~~~~~~~~n~~~Yne~a~~~t~k~ 816 (906)
+|.||+++|.. +.|+|+ ++|.+||.+|+++|.+|++. .+. ...+...+.++...|+++++.++.++
T Consensus 79 ~G~icl~~l~~------~~W~p~-~~l~~il~~i~~~l~~p~~~--~~~--n~eaa~~~~~~~~~f~~~~~~~~~k~ 144 (145)
T smart00212 79 SGEICLDILKQ------EKWSPA-TTLETVLLSIQSLLSEPNPD--SPL--NADAATLYKKNREEFKKKAREWTKKY 144 (145)
T ss_pred CCCEehhhcCC------CCCCCC-CcHHHHHHHHHHHHhCCCCC--Ccc--cHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence 99999999973 589999 99999999999999887653 332 12233566677888888888877654
No 15
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3e-26 Score=218.30 Aligned_cols=118 Identities=26% Similarity=0.393 Sum_probs=112.4
Q ss_pred chHHHHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCcccc
Q 002570 655 VKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVN 734 (906)
Q Consensus 655 ~~~~~~kRL~kEl~~L~~~~p~gI~v~~~ed~l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i~H 734 (906)
..-...||||+||..|.-+..+||.+.+..+|++.|...|.||.+|+|+|-.|++.+.||.+||+.||+|+|.|+ .||
T Consensus 26 ~~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltp--c~H 103 (175)
T KOG0421|consen 26 DGHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTP--CFH 103 (175)
T ss_pred cCchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeecc--ccC
Confidence 345668999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred cccCCCCceecccccCCCCCCCCccCCCCcchhhHHHHHHHHhcCCCC
Q 002570 735 PNLYESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKP 782 (906)
Q Consensus 735 PNVy~~GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll~~p~P 782 (906)
|||+..|.|||+||. ++|+.. +.+..||+|||+||-.||-
T Consensus 104 PNVD~~GnIcLDILk-------dKWSa~-YdVrTILLSiQSLLGEPNn 143 (175)
T KOG0421|consen 104 PNVDLSGNICLDILK-------DKWSAV-YDVRTILLSIQSLLGEPNN 143 (175)
T ss_pred CCccccccchHHHHH-------HHHHHH-HhHHHHHHHHHHHhCCCCC
Confidence 999999999999999 899999 9999999999999987753
No 16
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.7e-25 Score=211.50 Aligned_cols=142 Identities=27% Similarity=0.431 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHhcCCCceE-EEecCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCccccccc
Q 002570 659 WVKKVQQEWSILEKSLPETIY-VRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNL 737 (906)
Q Consensus 659 ~~kRL~kEl~~L~~~~p~gI~-v~~~ed~l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i~HPNV 737 (906)
+.+||+|||..|+++....+- ++..+.+++.|.++|+ |.+-||..|.|.+.|.||.+|||+||+++|.|+ +|||||
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tk--iYHpNV 79 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTK--IYHPNV 79 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeee--eccCCC
Confidence 468999999999999887554 5678899999999999 899999999999999999999999999999999 999999
Q ss_pred CCCCceecccccCCCCCCCCccCCCCcchhhHHHHHHHHhcCCCCCCCccccccccch--hhhhhcHHHHHHHHHHHHHH
Q 002570 738 YESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGR--AEGEKNSVSYNENAFLVTCK 815 (906)
Q Consensus 738 y~~GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll~~p~P~~nEag~e~~~~~--~~~~~n~~~Yne~a~~~t~k 815 (906)
++.|.|||.||.+ |+|+|+ ..+.|||.+|.+|+.+|+|. .+.+.. .++.++...|..+|-.++.+
T Consensus 80 De~gqvClPiis~------EnWkP~-T~teqVlqaLi~liN~P~pe------~plr~dlA~ey~~d~~kF~K~Aee~tkK 146 (153)
T KOG0422|consen 80 DEKGQVCLPIISA------ENWKPA-TRTEQVLQALIALINDPEPE------HPLRIDLAEEYIKDPKKFVKNAEEFTKK 146 (153)
T ss_pred CCCCceeeeeeec------ccccCc-ccHHHHHHHHHHHhcCCCcc------ccchhhHHHHHHHCHHHHHHhHHHHHHH
Confidence 9999999999997 999999 99999999999999999874 333322 45556666666666666655
Q ss_pred H
Q 002570 816 S 816 (906)
Q Consensus 816 ~ 816 (906)
+
T Consensus 147 ~ 147 (153)
T KOG0422|consen 147 Y 147 (153)
T ss_pred h
Confidence 4
No 17
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.9e-23 Score=211.57 Aligned_cols=119 Identities=29% Similarity=0.542 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCccccc
Q 002570 656 KRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNP 735 (906)
Q Consensus 656 ~~~~~kRL~kEl~~L~~~~p~gI~v~~~ed~l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i~HP 735 (906)
.+.+.|||+||++.|.++++++|.+++.++|+..|+-+|.||++|||+||.|+..|.||++||++||.|++.|+++||-+
T Consensus 3 ~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFkt 82 (244)
T KOG0894|consen 3 SKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFKT 82 (244)
T ss_pred chHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCceec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceecccccCCCCCCCCccCCCCcchhhHHHHHHHHhcCCCCC
Q 002570 736 NLYESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPY 783 (906)
Q Consensus 736 NVy~~GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll~~p~P~ 783 (906)
| -++|||+-..|+ +.|+|. |++..||..|.++|.+..|.
T Consensus 83 n----tRLCLSiSDfHP----dsWNP~-WsVStILtGLlSFM~e~~pT 121 (244)
T KOG0894|consen 83 N----TRLCLSISDFHP----DSWNPG-WSVSTILTGLLSFMTEDSPT 121 (244)
T ss_pred C----ceEEEeccccCc----CcCCCc-ccHHHHHHHHHHHHhcCCCc
Confidence 8 699999999887 899999 99999999999999998885
No 18
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.4e-23 Score=205.30 Aligned_cols=153 Identities=31% Similarity=0.588 Sum_probs=133.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCccccc
Q 002570 656 KRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNP 735 (906)
Q Consensus 656 ~~~~~kRL~kEl~~L~~~~p~gI~v~~~ed~l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i~HP 735 (906)
....+|-|.+|++.|..++|+||.|.+.++++..+.+.|.||.||||++|+|+..+.+..+||+.||+-+|+|+ ||||
T Consensus 8 pp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTK--IFHP 85 (223)
T KOG0423|consen 8 PPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTK--IFHP 85 (223)
T ss_pred ChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeee--eccC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ccCCCCceecccccCCCCCCCCccCCCCcchhhHHHHHHHHhcCCCCCCCccccccccchhhhh---hcHHHHHHHHHHH
Q 002570 736 NLYESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGRAEGE---KNSVSYNENAFLV 812 (906)
Q Consensus 736 NVy~~GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll~~p~P~~nEag~e~~~~~~~~~---~n~~~Yne~a~~~ 812 (906)
||-.+|.||.+.|. ..|+|. ..|.+||+.|.+||..|+| +...+.++++ +|...|.+.||.
T Consensus 86 NVaaNGEICVNtLK-------kDW~p~-LGirHvLltikCLLI~PnP-------ESALNEeAGkmLLEnYdeYa~rARl- 149 (223)
T KOG0423|consen 86 NVAANGEICVNTLK-------KDWNPS-LGIRHVLLTIKCLLIEPNP-------ESALNEEAGKMLLENYDEYARRARL- 149 (223)
T ss_pred CcccCceehhhhhh-------cccCcc-cchhhHhhhhheeeecCCh-------HHHHhHHHHHHHHHhHHHHHHHHHH-
Confidence 99999999999999 789999 9999999999999999999 3333444444 455566666654
Q ss_pred HHHHHHHHHcCCCccHHH
Q 002570 813 TCKSMLYLLHKPPKHFKE 830 (906)
Q Consensus 813 t~k~m~~~l~~pp~~Fe~ 830 (906)
|.++..+|...|..
T Consensus 150 ----~TeIHa~p~~~~~~ 163 (223)
T KOG0423|consen 150 ----YTEIHAKPKPKFKT 163 (223)
T ss_pred ----HHHhhcCCCCCccc
Confidence 55666677666654
No 19
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.8e-22 Score=198.53 Aligned_cols=140 Identities=28% Similarity=0.461 Sum_probs=113.5
Q ss_pred chHHHHHHHHHHHHHHHhcCCCceEEEe--cCCCcce--EEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCC
Q 002570 655 VKRAWVKKVQQEWSILEKSLPETIYVRI--FEDRVDL--IRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGG 730 (906)
Q Consensus 655 ~~~~~~kRL~kEl~~L~~~~p~gI~v~~--~ed~l~~--w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~ 730 (906)
..+.++-||++++.+| ++|+++.... ..+++.. +..+|. |..+.|+||.|.|.+.+|+.||+.||+|++.|+
T Consensus 25 ~~s~a~lrl~~di~el--nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltk- 100 (184)
T KOG0420|consen 25 KVSAALLRLKKDILEL--NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTK- 100 (184)
T ss_pred cccHHHHHHHhhhhhc--cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeec-
Confidence 3355566777776665 8998877432 2344444 777787 999999999999999999999999999999999
Q ss_pred cccccccCCCCceecccccCCCCCCCCccCCCCcchhhHHHHHHHHhcCCCCCCCccccccccchhhhhhcHHHHHHHHH
Q 002570 731 LRVNPNLYESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGRAEGEKNSVSYNENAF 810 (906)
Q Consensus 731 ~i~HPNVy~~GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll~~p~P~~nEag~e~~~~~~~~~~n~~~Yne~a~ 810 (906)
+|||||+.+|.|||+||+ +.|+|. .+|.+|+..|+.|+++|+|- |+++
T Consensus 101 -V~HPNId~~GnVCLnILR-------edW~P~-lnL~sIi~GL~~LF~epn~e------DpLN----------------- 148 (184)
T KOG0420|consen 101 -VYHPNIDLDGNVCLNILR-------EDWRPV-LNLNSIIYGLQFLFLEPNPE------DPLN----------------- 148 (184)
T ss_pred -cccCCcCCcchHHHHHHH-------hcCccc-cchHHHHHHHHHHhccCCCc------cccc-----------------
Confidence 999999999999999999 899999 99999999999999999863 4443
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHH
Q 002570 811 LVTCKSMLYLLHKPPKHFKELVEE 834 (906)
Q Consensus 811 ~~t~k~m~~~l~~pp~~Fe~~v~~ 834 (906)
+.++.++...++.|+..|+.
T Consensus 149 ----~eAA~~l~~n~e~F~~~Vr~ 168 (184)
T KOG0420|consen 149 ----KEAAAVLKSNREGFENNVRR 168 (184)
T ss_pred ----HHHHHHHHhCHHHHHHHHHH
Confidence 23455677777788776643
No 20
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.5e-21 Score=183.88 Aligned_cols=116 Identities=24% Similarity=0.541 Sum_probs=108.6
Q ss_pred chHHHHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCcccc
Q 002570 655 VKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVN 734 (906)
Q Consensus 655 ~~~~~~kRL~kEl~~L~~~~p~gI~v~~~ed~l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i~H 734 (906)
-.+.+.+|||||+.+++.++|.|+..+ ..+++..|.+-+.|.+||.|+|-.|.+.+.||+.||+..|.|.|..+ ...|
T Consensus 12 ls~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~-~P~H 89 (161)
T KOG0427|consen 12 LSKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGP-APLH 89 (161)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecC-CCCC
Confidence 346678999999999999999999998 66789999999999999999999999999999999999999999987 4789
Q ss_pred cccCCCCceecccccCCCCCCCCccCCCCcchhhHHHHHHHHhcCC
Q 002570 735 PNLYESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNE 780 (906)
Q Consensus 735 PNVy~~GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll~~p 780 (906)
|+||.+|.|||+||. +.|+|+ .++..|.+||.+||...
T Consensus 90 PHiYSNGHICL~iL~-------d~WsPA-msv~SvClSIlSMLSSs 127 (161)
T KOG0427|consen 90 PHIYSNGHICLDILY-------DSWSPA-MSVQSVCLSILSMLSSS 127 (161)
T ss_pred CceecCCeEEEEeec-------ccCCcc-hhhHHHHHHHHHHHccC
Confidence 999999999999998 899999 99999999999999754
No 21
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.7e-21 Score=189.81 Aligned_cols=138 Identities=24% Similarity=0.447 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCcccccccC-C
Q 002570 661 KKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLY-E 739 (906)
Q Consensus 661 kRL~kEl~~L~~~~p~gI~v~~~ed~l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i~HPNVy-~ 739 (906)
|||-.++..|..+ +..|....+.|..+.+.+.||.+|||+||.|++.+.+|.+||++.|.|.|.++ ||||||+ .
T Consensus 6 rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnK--IfHPNIDe~ 80 (189)
T KOG0416|consen 6 RRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNK--IFHPNIDEA 80 (189)
T ss_pred cchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceee--ccCCCchhc
Confidence 5888888777654 55788999999999999999999999999999999999999999999999999 9999998 5
Q ss_pred CCceecccccCCCCCCCCccCCCCcchhhHHHHH-HHHhcCCCCCCCccccccccch--hhhhhcHHHHHHHHHHHHHHH
Q 002570 740 SGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSL-QALVLNEKPYFNEAGYDKQIGR--AEGEKNSVSYNENAFLVTCKS 816 (906)
Q Consensus 740 ~GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sI-q~Ll~~p~P~~nEag~e~~~~~--~~~~~n~~~Yne~a~~~t~k~ 816 (906)
+|.|||+.|+ ..|+|. +.|..|+... -.||.-|||. +++++. ..+.++.+.|+++++.+..++
T Consensus 81 SGsVCLDViN-------QtWSp~-yDL~NIfetfLPQLL~YPNp~------DPLN~eAAal~l~~~~~Y~~~v~eY~~kY 146 (189)
T KOG0416|consen 81 SGSVCLDVIN-------QTWSPL-YDLVNIFETFLPQLLRYPNPS------DPLNGEAAALYLRDPEEYEEKVKEYIKKY 146 (189)
T ss_pred cCccHHHHHh-------hhhhHH-HHHHHHHHHHhHHHhcCCCCC------CCcccHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 8999999999 689999 9999999665 5788889875 666554 334455666666666665554
Q ss_pred H
Q 002570 817 M 817 (906)
Q Consensus 817 m 817 (906)
+
T Consensus 147 A 147 (189)
T KOG0416|consen 147 A 147 (189)
T ss_pred c
Confidence 4
No 22
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.8e-18 Score=174.26 Aligned_cols=113 Identities=27% Similarity=0.469 Sum_probs=105.4
Q ss_pred chHHHHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCcccc
Q 002570 655 VKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVN 734 (906)
Q Consensus 655 ~~~~~~kRL~kEl~~L~~~~p~gI~v~~~ed~l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i~H 734 (906)
.+....|||+||.++|+ ++-+.+...+.|+|++.|++.|.||.+|-|+||+|+.+|.||.+||++||.+..+|+++||-
T Consensus 8 ~KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE 86 (314)
T KOG0428|consen 8 LKNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFE 86 (314)
T ss_pred ccCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCcee
Confidence 44567999999999998 67777888999999999999999999999999999999999999999999999999998997
Q ss_pred cccCCCCceecccccCCCCCCCCccCCCCcchhhHHHHHHHHh
Q 002570 735 PNLYESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALV 777 (906)
Q Consensus 735 PNVy~~GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll 777 (906)
-| -||||||-+.++ |.|.|+ |+|...|++|.++|
T Consensus 87 ~n----kKiCLSISgyHP----EtWqPS-WSiRTALlAlIgFm 120 (314)
T KOG0428|consen 87 VN----KKICLSISGYHP----ETWQPS-WSIRTALLALIGFM 120 (314)
T ss_pred eC----ceEEEEecCCCc----cccCcc-hhHHHHHHHHHccc
Confidence 76 789999999887 899999 99999999999998
No 23
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.2e-13 Score=141.08 Aligned_cols=155 Identities=21% Similarity=0.272 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCC--CCCccEEecCCcccccccC
Q 002570 661 KKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH--EPPLVHYISGGLRVNPNLY 738 (906)
Q Consensus 661 kRL~kEl~~L~~~~p~gI~v~~~ed~l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~--~PP~V~f~t~~~i~HPNVy 738 (906)
-.|..|+....+..-+||||.|...+-.+|..+|++-.| .|.||.|+|.|.+|.+||. .-|+|.|.+. .|||.|.
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~--vfHP~ic 98 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQS--VFHPLIC 98 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeecc--ccccccC
Confidence 367778888888888999999999999999999998655 8999999999999999995 5799999999 9999997
Q ss_pred -CCCceecccccCCCCCCCCccCCCCcchhhHHHHHHHHhcCCCCCCCccccccccchhhhhhcHHHHHHHHHHHHHHHH
Q 002570 739 -ESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGRAEGEKNSVSYNENAFLVTCKSM 817 (906)
Q Consensus 739 -~~GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll~~p~P~~nEag~e~~~~~~~~~~n~~~Yne~a~~~t~k~m 817 (906)
.++.+||+-.. ..|.....+|+|||+.||..+.+++-... ..-+..+...+++++..|.+++..++..+-
T Consensus 99 p~skeLdl~raf-------~eWRk~ehhiwqvL~ylqriF~dpd~si~--kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr 169 (258)
T KOG0429|consen 99 PKSKELDLNRAF-------PEWRKEEHHIWQVLVYLQRIFYDPDVSID--KLINPEAAVLYKKHRDEFRERVQECVKASR 169 (258)
T ss_pred CCccceeHhhhh-------hhhhccccHHHHHHHHHHHHhcCcccchh--hhcChHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 57899998766 35988889999999999999998754321 011223446788999999999999988777
Q ss_pred HHHHcCCCcc
Q 002570 818 LYLLHKPPKH 827 (906)
Q Consensus 818 ~~~l~~pp~~ 827 (906)
..++..||..
T Consensus 170 ~~iyD~ppte 179 (258)
T KOG0429|consen 170 SMIYDEPPTE 179 (258)
T ss_pred HHhcCCCCCC
Confidence 7788888754
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.6e-08 Score=97.35 Aligned_cols=111 Identities=21% Similarity=0.296 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhcCCCceEEEecC--CC--cceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCccccccc
Q 002570 662 KVQQEWSILEKSLPETIYVRIFE--DR--VDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNL 737 (906)
Q Consensus 662 RL~kEl~~L~~~~p~gI~v~~~e--d~--l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i~HPNV 737 (906)
||.+|+..-++..-++..-.-.+ ++ |..|..+|+||+.|+||+-+|.+.|.+.++||..||.|+|.++ +--+-+
T Consensus 9 rlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tk--inm~gv 86 (138)
T KOG0896|consen 9 RLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTK--INMNGV 86 (138)
T ss_pred hhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEE--eeeccc
Confidence 68888877777666554333223 33 4568899999999999999999999999999999999999997 433334
Q ss_pred C-CCCceecccccCCCCCCCCccCCCCcchhhHHHHHHHHhcCC
Q 002570 738 Y-ESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNE 780 (906)
Q Consensus 738 y-~~GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll~~p 780 (906)
. .+|.|--.-+..- .+|.-. +++..||..+..+++..
T Consensus 87 n~~~g~Vd~~~i~~L-----~~W~~~-y~~~~vl~~lr~~m~~~ 124 (138)
T KOG0896|consen 87 NSSNGVVDPRDITVL-----ARWQRS-YSIKMVLGQLRKEMMSK 124 (138)
T ss_pred ccCCCccCccccchh-----hccccc-chhhHHHHhhhHHHHHH
Confidence 3 4566643222210 579988 99999999999877643
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=97.55 E-value=0.0001 Score=72.34 Aligned_cols=68 Identities=26% Similarity=0.502 Sum_probs=59.3
Q ss_pred CCCEEEEEEECCCCCCCCCCccEEecCCc-ccccccCCCCceec---ccccCCCCCCCCccCCCCcchhhHHHHHHHHhc
Q 002570 703 HDGLFFFDIFLPPEYPHEPPLVHYISGGL-RVNPNLYESGKVCL---SLLNTWTGSGTEVWNPGGSTILQVLLSLQALVL 778 (906)
Q Consensus 703 egG~F~fdI~fP~~YP~~PP~V~f~t~~~-i~HPNVy~~GkVCL---slL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll~ 778 (906)
.++.|.+.|.||+.||..||.|....+.. .+=|+|+.+|++|+ ++.- ..|.|. .++.++|..++.+|.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~-------D~~~P~-~~~~~~l~~a~~lL~ 105 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVL-------DPWDPE-GIIADCLERAIRLLE 105 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCccc-------CccCHH-HHHHHHHHHHHHHHH
Confidence 68999999999999999999999986532 27899999999999 4443 689999 999999999999986
No 26
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.52 E-value=0.00031 Score=68.14 Aligned_cols=83 Identities=28% Similarity=0.541 Sum_probs=55.9
Q ss_pred EEEEcCCCCCCCCCEE--EEEEECCCCCCCCCCccEEecC---CcccccccCCCCceecccccCCCCCCCCccCCCCcch
Q 002570 692 AAIVGAKGTPYHDGLF--FFDIFLPPEYPHEPPLVHYISG---GLRVNPNLYESGKVCLSLLNTWTGSGTEVWNPGGSTI 766 (906)
Q Consensus 692 ~~I~GP~~TPYegG~F--~fdI~fP~~YP~~PP~V~f~t~---~~i~HPNVy~~GkVCLslL~tw~g~~~e~WsP~~~tl 766 (906)
..+.|-=--.|+|..| -+.|.||.+||..||.|..... ..+-+.+|+.+|+|.+..|. .|++.+++|
T Consensus 33 L~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~--------~W~~~~s~L 104 (121)
T PF05743_consen 33 LCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQ--------NWNPPSSNL 104 (121)
T ss_dssp EEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHH--------T--TTTS-H
T ss_pred EEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhc--------cCCCCCCCH
Confidence 3344422235888887 4678899999999999988642 23345599999999999998 577755999
Q ss_pred hhHHHHHHHHhcCCCC
Q 002570 767 LQVLLSLQALVLNEKP 782 (906)
Q Consensus 767 ~qVL~sIq~Ll~~p~P 782 (906)
.+++..++..+...-|
T Consensus 105 ~~lv~~l~~~F~~~pP 120 (121)
T PF05743_consen 105 VDLVQELQAVFSEEPP 120 (121)
T ss_dssp HHHHHHHHHCCCHS-S
T ss_pred HHHHHHHHHHHhHcCC
Confidence 9999999988754433
No 27
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00026 Score=66.99 Aligned_cols=60 Identities=20% Similarity=0.530 Sum_probs=50.8
Q ss_pred EEEEEECCCCCCCCCCccEEecCCcccccccC-----CCCceecccccCCCCCCCCccCCCCcchhhHHHHHHHHhcC
Q 002570 707 FFFDIFLPPEYPHEPPLVHYISGGLRVNPNLY-----ESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLN 779 (906)
Q Consensus 707 F~fdI~fP~~YP~~PP~V~f~t~~~i~HPNVy-----~~GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll~~ 779 (906)
..+.+.|+.+||+.||.++-.. |.++ ++|.||+.||.+ +.|+.+ |+++.+++.|-+.+..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~------p~~~~Gyvl~ggAIcmellt~------qgwssa-y~Ve~vi~qiaatlVk 77 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVK------PLEDEGYVLEGGAICMELLTK------QGWSSA-YEVERVIMQIAATLVK 77 (122)
T ss_pred eEeeeecccCCCCCCCcceeee------ecccCCEEecchhhHHHHHcc------ccccch-hhHHHHHHHHHHHhhc
Confidence 3566789999999999998765 4443 689999999997 899998 9999999999998853
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=97.45 E-value=9.8e-05 Score=72.18 Aligned_cols=89 Identities=21% Similarity=0.376 Sum_probs=50.6
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEEcCCCCCCCCCE----------EEEEEECCCCCCCCCCc
Q 002570 654 QVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGL----------FFFDIFLPPEYPHEPPL 723 (906)
Q Consensus 654 ~~~~~~~kRL~kEl~~L~~~~p~gI~v~~~ed~l~~w~~~I~GP~~TPYegG~----------F~fdI~fP~~YP~~PP~ 723 (906)
.....|..||..|+..|.+ ||.....+-..|.-+=.-+.||-|.|-+ |.|.+.+|..||..||.
T Consensus 20 rd~~~W~~RLKEEy~aLI~------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pE 93 (161)
T PF08694_consen 20 RDGDLWVQRLKEEYQALIK------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPE 93 (161)
T ss_dssp TSCHHHHHHHHHHHHHHHH------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS---
T ss_pred CCHHHHHHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcc
Confidence 4558999999999999876 3333333334454444557777776654 45666779999999999
Q ss_pred cEEecCCcccccccCCCCceeccccc
Q 002570 724 VHYISGGLRVNPNLYESGKVCLSLLN 749 (906)
Q Consensus 724 V~f~t~~~i~HPNVy~~GkVCLslL~ 749 (906)
+..-.-.+. -.-.|..|+|||++-.
T Consensus 94 i~lPeLdGK-TaKMYRGGkIClt~HF 118 (161)
T PF08694_consen 94 IALPELDGK-TAKMYRGGKICLTDHF 118 (161)
T ss_dssp -B-GGGTTT--SSBCCCCBB---TTH
T ss_pred eeccccCCc-hhhhhcCceEeeeccc
Confidence 987531111 3567899999998765
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=0.0058 Score=67.76 Aligned_cols=83 Identities=25% Similarity=0.473 Sum_probs=65.7
Q ss_pred EEcCCCCCCCCCEEE--EEEECCCCCCCCCCccEEecC---CcccccccCCCCceecccccCCCCCCCCccCCCCcchhh
Q 002570 694 IVGAKGTPYHDGLFF--FDIFLPPEYPHEPPLVHYISG---GLRVNPNLYESGKVCLSLLNTWTGSGTEVWNPGGSTILQ 768 (906)
Q Consensus 694 I~GP~~TPYegG~F~--fdI~fP~~YP~~PP~V~f~t~---~~i~HPNVy~~GkVCLslL~tw~g~~~e~WsP~~~tl~q 768 (906)
+.|---+||.|.+|- +.|.+++.||+.||.|..... ....|-+|+.+|+|.|..|. +|.+..++|..
T Consensus 55 ~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh--------~W~~pssdLv~ 126 (365)
T KOG2391|consen 55 LDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH--------NWDPPSSDLVG 126 (365)
T ss_pred ccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc--------cCCCccchHHH
Confidence 445444689998886 566789999999999977532 12348999999999999997 68888899999
Q ss_pred HHHHHHHHhcCCCCCC
Q 002570 769 VLLSLQALVLNEKPYF 784 (906)
Q Consensus 769 VL~sIq~Ll~~p~P~~ 784 (906)
++.-|.+.+..+.|.|
T Consensus 127 Liq~l~a~f~~~pP~y 142 (365)
T KOG2391|consen 127 LIQELIAAFSEDPPVY 142 (365)
T ss_pred HHHHHHHHhcCCCccc
Confidence 9999999888766555
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.013 Score=56.82 Aligned_cols=89 Identities=21% Similarity=0.373 Sum_probs=61.1
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEEcCCCCCCCCCE--------EEEE--EECCCCCCCCCCc
Q 002570 654 QVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGL--------FFFD--IFLPPEYPHEPPL 723 (906)
Q Consensus 654 ~~~~~~~kRL~kEl~~L~~~~p~gI~v~~~ed~l~~w~~~I~GP~~TPYegG~--------F~fd--I~fP~~YP~~PP~ 723 (906)
.....|..||..|++.|.. +|.-..++-..|.-+-..++||-|-|-+ |.|+ +.+|-.||...|.
T Consensus 23 rd~~~wvqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tape 96 (167)
T KOG3357|consen 23 RDGDLWVQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPE 96 (167)
T ss_pred ccchHHHHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcc
Confidence 5668899999999999865 2333444444565555678899988865 3444 5569999999999
Q ss_pred cEEecCCcccccccCCCCceeccccc
Q 002570 724 VHYISGGLRVNPNLYESGKVCLSLLN 749 (906)
Q Consensus 724 V~f~t~~~i~HPNVy~~GkVCLslL~ 749 (906)
+..---.+. .--+|..|+|||+--.
T Consensus 97 ialpeldgk-takmyrggkiclt~hf 121 (167)
T KOG3357|consen 97 IALPELDGK-TAKMYRGGKICLTDHF 121 (167)
T ss_pred ccccccCch-hhhhhcCceEeecccc
Confidence 876321101 2346789999997543
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=91.74 E-value=0.33 Score=45.14 Aligned_cols=68 Identities=18% Similarity=0.276 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEEc--CCCCCCCCCEEEEEEECCCCCCCCCCccEEecC
Q 002570 661 KKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVG--AKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISG 729 (906)
Q Consensus 661 kRL~kEl~~L~~~~p~gI~v~~~ed~l~~w~~~I~G--P~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~ 729 (906)
.+.+.|+..|+.--++.+ ..........+++.+.. ...+.-..-.+.+.|.||++||..||.|.+.+.
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 467789998887555444 22233344556666632 234444566899999999999999999998875
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=89.74 E-value=2.7 Score=41.24 Aligned_cols=80 Identities=23% Similarity=0.460 Sum_probs=54.7
Q ss_pred EEc--CCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCcccccccCCC-Cce--ecccccCCCC-------CCCCccCC
Q 002570 694 IVG--AKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYES-GKV--CLSLLNTWTG-------SGTEVWNP 761 (906)
Q Consensus 694 I~G--P~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i~HPNVy~~-GkV--CLslL~tw~g-------~~~e~WsP 761 (906)
|.| -+..+|....-.+-|.+|+.||..+|-+.|..+... ..+ |.| |-+...+..| +-...|+|
T Consensus 29 i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~-----~~~G~~iP~~~~~~~~~~G~~wQrWSRH~~~W~P 103 (122)
T PF14462_consen 29 IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLK-----LADGGPIPNAAEVTQTFDGRTWQRWSRHNNPWRP 103 (122)
T ss_pred EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceE-----ccCCCcCCchhcchhhcCCeeeeeecCCCCCCCC
Confidence 554 334569999999999999999999998877754111 122 334 4444333222 22567999
Q ss_pred CCcchhhHHHHHHHHhc
Q 002570 762 GGSTILQVLLSLQALVL 778 (906)
Q Consensus 762 ~~~tl~qVL~sIq~Ll~ 778 (906)
..-+|.+.|.-|...|.
T Consensus 104 ~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 104 GVDDLWTHLARVEHALA 120 (122)
T ss_pred CCCcHHHHHHHHHHHHh
Confidence 98899999998887764
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=89.62 E-value=1.4 Score=40.59 Aligned_cols=27 Identities=22% Similarity=0.488 Sum_probs=23.1
Q ss_pred CCCEEEEEEECCCCCCCCCCccEEecC
Q 002570 703 HDGLFFFDIFLPPEYPHEPPLVHYISG 729 (906)
Q Consensus 703 egG~F~fdI~fP~~YP~~PP~V~f~t~ 729 (906)
+.-.+.+.|.||++||..+|.+.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 445689999999999999999988764
No 34
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=80.53 E-value=7.7 Score=49.07 Aligned_cols=81 Identities=26% Similarity=0.240 Sum_probs=60.2
Q ss_pred ccCCCCeee-ecCCCCCCcEEEEEEeEEEEEEecCceeee---cCCccccccCCCcCCCCEEE--eC---CeeeEEEEEE
Q 002570 57 GFTHGDIVR-SVTDPSGQMGRVININMLVDLEGIPGYIIK---DVNSKNILKIRSISVGDFVV--LG---AWLGRVDKVI 127 (906)
Q Consensus 57 ~f~~GDvVr-~~~d~~gQ~G~V~~V~v~vdL~~~~g~vi~---~V~s~~L~~i~~~~~GDyVv--~g---~WlG~V~~V~ 127 (906)
.|+|||.|. -.-+..|..|.|..|+-++-+.....+-++ .|++.+|++ .|.+||+|- .| -=-|-|+.|.
T Consensus 407 ~F~~GD~VeV~~Gel~glkG~ve~vdg~~vti~~~~e~l~~pl~~~~~eLrK--yF~~GDhVKVi~G~~eG~tGlVvrVe 484 (1024)
T KOG1999|consen 407 LFSPGDAVEVIVGELKGLKGKVESVDGTIVTIMSKHEDLKGPLEVPASELRK--YFEPGDHVKVIAGRYEGDTGLVVRVE 484 (1024)
T ss_pred ccCCCCeEEEeeeeeccceeEEEeccCceEEEeeccccCCCccccchHhhhh--hccCCCeEEEEeccccCCcceEEEEe
Confidence 399999995 456677899999999887555443323333 499999975 599999984 44 5568899999
Q ss_pred eeEEEEeCCCCe
Q 002570 128 DSVNIVLDDGSK 139 (906)
Q Consensus 128 ~~v~v~~~dGs~ 139 (906)
...+++++|-..
T Consensus 485 ~~~vi~~Sd~t~ 496 (1024)
T KOG1999|consen 485 QGDVILLSDLTM 496 (1024)
T ss_pred CCeEEEEecCcc
Confidence 988887777653
No 35
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=79.81 E-value=13 Score=36.40 Aligned_cols=103 Identities=23% Similarity=0.216 Sum_probs=73.0
Q ss_pred CcEEEecCCCCCCCCCCCCceEEEEeecCCCCEEEEEccccCCCCCCCCeeeeeeeecccCCC---CccccCcEEEEecc
Q 002570 334 DQFVLEKGISDDPHIPSGQRWGVVQGVDAKERTVTVQWRAKANSDSDANQSEVSAYELVEHPD---YSYCYGDVVFKLVQ 410 (906)
Q Consensus 334 Gd~V~~k~~~~~~~~~~~~~~GVVqsvd~~eRta~V~W~~~~~~~~~~~eE~VSvYel~~hpd---~~~~~Gd~Vir~~~ 410 (906)
|+-|+-....+. -=--|+|.+.- ..+.+-|.|-. ...+.|+.+++..+.+ .....||.|+=..+
T Consensus 1 g~~VlAR~~~DG-----~YY~GtV~~~~-~~~~~lV~f~~-------~~~~~v~~~~iI~~~~~~~~~L~~GD~VLA~~~ 67 (124)
T PF15057_consen 1 GQKVLARREEDG-----FYYPGTVKKCV-SSGQFLVEFDD-------GDTQEVPISDIIALSDAMRHSLQVGDKVLAPWE 67 (124)
T ss_pred CCeEEEeeCCCC-----cEEeEEEEEcc-CCCEEEEEECC-------CCEEEeChHHeEEccCcccCcCCCCCEEEEecC
Confidence 566776655431 11237666665 89999999922 4678888888877765 48999999974432
Q ss_pred CCccccccccccCCCCCCcCCCCCCCCCCCcc-eEEe------eecCCcEEEEecCCceeeeeccceeeee
Q 002570 411 NQFGMCKDAALEGTISDWEQNDCPDTHYSSCI-GIVT------GFKDGAVEVRWATGFTTKVGPNEIYGVE 474 (906)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-G~V~------~~~dG~v~V~w~~g~~s~v~p~~l~~v~ 474 (906)
. ....++ |.|+ ...+..+.|..-||.+..|-..+++.|.
T Consensus 68 ~-------------------------~~~~Y~Pg~V~~~~~~~~~~~~~~~V~f~ng~~~~vp~~~~~~I~ 113 (124)
T PF15057_consen 68 P-------------------------DDCRYGPGTVIAGPERRASEDKEYTVRFYNGKTAKVPRGEVIWIS 113 (124)
T ss_pred c-------------------------CCCEEeCEEEEECccccccCCceEEEEEECCCCCccchhhEEECC
Confidence 1 112344 7887 3468999999999999999888888774
No 36
>PRK03174 sspH acid-soluble spore protein H; Provisional
Probab=69.54 E-value=5.1 Score=34.52 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=30.0
Q ss_pred EEEeecCCCCEEEEEccccCCCCCCCCeeeeeeeecccC
Q 002570 356 VVQGVDAKERTVTVQWRAKANSDSDANQSEVSAYELVEH 394 (906)
Q Consensus 356 VVqsvd~~eRta~V~W~~~~~~~~~~~eE~VSvYel~~h 394 (906)
-||+||-...||+|..++.+ ..+-+|+|-+|.+|
T Consensus 26 ~Ie~vde~~~tA~I~~l~~p-----~~~~~Vpv~~L~E~ 59 (59)
T PRK03174 26 YIQHVDEQNGTARIHPLDNP-----NQEQSVPLASLKEH 59 (59)
T ss_pred EEEEEcCCCCeEEEEECCCC-----CcEEEEEHHHhccC
Confidence 39999999999999999865 57789999999876
No 37
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=65.42 E-value=7.3 Score=40.03 Aligned_cols=63 Identities=22% Similarity=0.336 Sum_probs=46.6
Q ss_pred EEEECCCCCCCCCCccEEecCCccc-ccccCCC-----CceecccccCCCCCCCCccCCCCcchhhHHHHHHHHhc
Q 002570 709 FDIFLPPEYPHEPPLVHYISGGLRV-NPNLYES-----GKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVL 778 (906)
Q Consensus 709 fdI~fP~~YP~~PP~V~f~t~~~i~-HPNVy~~-----GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll~ 778 (906)
+.|.|++.||..+|.|.+.-..+.- +|+++.. ..+||-.-. | ..|.+. .++..+|..|+.-|.
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~-~-----~e~~~~-~g~~~~l~rl~~Wl~ 125 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGP-W-----SEWRPS-WGPEGFLDRLFDWLR 125 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCC-H-----HHhhhc-cCHHHHHHHHHHHHH
Confidence 5689999999999988776542222 4777654 679996554 4 568888 888888888877664
No 38
>TIGR02861 SASP_H small acid-soluble spore protein, H-type. This model is derived from pfam08141 but has been expanded to include in the seed corresponding proteins from three species of Clostridium. Members of this family should occur only in endospore-forming bacteria, typically with two members per genome, but may be absent from the genomes of some endospore-forming bacteria. SspH (previously designated YfjU) was shown to be expressed specifically in spores of Bacillus subtilis.
Probab=48.80 E-value=20 Score=30.88 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=28.0
Q ss_pred EEEeecCCCCEEEEEccccCCCCCCCCeeeeeeeeccc
Q 002570 356 VVQGVDAKERTVTVQWRAKANSDSDANQSEVSAYELVE 393 (906)
Q Consensus 356 VVqsvd~~eRta~V~W~~~~~~~~~~~eE~VSvYel~~ 393 (906)
-||+||-...||+|..++.+ +.+-+|.|-+|.+
T Consensus 26 ~Ie~vde~~~tA~V~~l~~p-----~~~~~Vpv~~L~E 58 (58)
T TIGR02861 26 YIEHVDEQSGTARVYSLDNP-----GKEQDVPVNDLEE 58 (58)
T ss_pred EEEEEcCCCCeEEEEECCCC-----CcEEEEEHHHccC
Confidence 49999999999999999865 5678999888753
No 39
>PF08141 SspH: Small acid-soluble spore protein H family; InterPro: IPR012610 This family consists of the small acid-soluble spore proteins (SASP) of the H type (sspH). SspH are unique to spores of Bacillus subtilis and are expressed only in the forespore compartment during sporulation of this organism. The sspH genes are monocistronic and are recognised by the forespore-specific sigma factor for RNA polymerase - sigma-G. The specific role of this protein is unclear but is thought to play a role in sporulation under conditions different from that of the common laboratory tests of spore properties [].; GO: 0030436 asexual sporulation, 0042601 endospore-forming forespore
Probab=48.62 E-value=21 Score=30.72 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=28.2
Q ss_pred EEEeecCCCCEEEEEccccCCCCCCCCeeeeeeeeccc
Q 002570 356 VVQGVDAKERTVTVQWRAKANSDSDANQSEVSAYELVE 393 (906)
Q Consensus 356 VVqsvd~~eRta~V~W~~~~~~~~~~~eE~VSvYel~~ 393 (906)
-||+||....||+|.-++.+ ..+-+|+|.+|.+
T Consensus 26 ~Ie~vde~~~tA~V~~l~~p-----~~~~~Vpv~~L~E 58 (58)
T PF08141_consen 26 WIEHVDEENGTARVHPLDNP-----EEEQEVPVNDLEE 58 (58)
T ss_pred EEEEEcCCCCeEEEEECCCC-----CcEEEEEHHHccC
Confidence 39999999999999999655 5788999998863
No 40
>PRK01625 sspH acid-soluble spore protein H; Provisional
Probab=47.10 E-value=21 Score=30.94 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=28.2
Q ss_pred EEEeecCCCCEEEEEccccCCCCCCCCeeeeeeeeccc
Q 002570 356 VVQGVDAKERTVTVQWRAKANSDSDANQSEVSAYELVE 393 (906)
Q Consensus 356 VVqsvd~~eRta~V~W~~~~~~~~~~~eE~VSvYel~~ 393 (906)
-||+||-...||+|...+.+ ..+-+|.|.+|.+
T Consensus 26 ~Iq~vde~~~tA~V~~~~~p-----~~e~~Vpv~~L~E 58 (59)
T PRK01625 26 WIESCDEQSGVAQVYDVSNP-----GESVHVDVTALEE 58 (59)
T ss_pred EEEEEcCCCCeEEEEecCCC-----CcEEEEEHHHccc
Confidence 39999999999999999876 5677898888864
No 41
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=38.51 E-value=1.2e+02 Score=29.89 Aligned_cols=70 Identities=19% Similarity=0.266 Sum_probs=52.1
Q ss_pred EEEEEEEEeCCCceeeCcCCCceeecccCCCcccCCCcEEEecCCCCCCCCCCCCce--EEEEee----cCCCCEEEEEc
Q 002570 298 TKTKFDVVWQDGSCSVGLDSQALLPVNVVNSHEFWPDQFVLEKGISDDPHIPSGQRW--GVVQGV----DAKERTVTVQW 371 (906)
Q Consensus 298 t~T~vdV~WQDGt~~~~i~st~L~P~~~lddhEf~PGd~V~~k~~~~~~~~~~~~~~--GVVqsv----d~~eRta~V~W 371 (906)
..+.+-|.|-+|..+. ++..++++...--.|-.-|||+|+-+.+.. ..+| |+|++. -..++.-.|+.
T Consensus 24 ~~~~~lV~f~~~~~~~-v~~~~iI~~~~~~~~~L~~GD~VLA~~~~~------~~~Y~Pg~V~~~~~~~~~~~~~~~V~f 96 (124)
T PF15057_consen 24 SSGQFLVEFDDGDTQE-VPISDIIALSDAMRHSLQVGDKVLAPWEPD------DCRYGPGTVIAGPERRASEDKEYTVRF 96 (124)
T ss_pred CCCEEEEEECCCCEEE-eChHHeEEccCcccCcCCCCCEEEEecCcC------CCEEeCEEEEECccccccCCceEEEEE
Confidence 6788999997777775 799999998865599999999999884432 2335 689875 55566666665
Q ss_pred ccc
Q 002570 372 RAK 374 (906)
Q Consensus 372 ~~~ 374 (906)
++-
T Consensus 97 ~ng 99 (124)
T PF15057_consen 97 YNG 99 (124)
T ss_pred ECC
Confidence 553
No 42
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=38.10 E-value=91 Score=38.40 Aligned_cols=71 Identities=25% Similarity=0.403 Sum_probs=40.9
Q ss_pred cccCCCCeeeecCCC------CCCcEEEEEEeEE-EE-EEecCceee-ecCCcccccc--CCC----cCCCCEEEeCCee
Q 002570 56 RGFTHGDIVRSVTDP------SGQMGRVININML-VD-LEGIPGYII-KDVNSKNILK--IRS----ISVGDFVVLGAWL 120 (906)
Q Consensus 56 R~f~~GDvVr~~~d~------~gQ~G~V~~V~v~-vd-L~~~~g~vi-~~V~s~~L~~--i~~----~~~GDyVv~g~Wl 120 (906)
+++.+||.|.....| .|..|.|.|---+ .| +....|..| ++|....|-+ .|+ +..||.|.-|+||
T Consensus 57 ~Gl~~G~~V~~tg~plsv~lGpglLGrv~Dg~grPLd~~~~~~~~~i~rG~~~~~l~~~~~w~f~p~~k~gd~v~~gdi~ 136 (586)
T PRK04192 57 SGIKPGEPVEFTGEPLSVELGPGLLGSIFDGIQRPLDELAEKSGDFLERGVYVPALDREKKWEFTPTVKVGDKVEAGDIL 136 (586)
T ss_pred cCCCCCCEEEeCCCccEEEcCHHhcCCeecCCCCcccccchhcccccccCCCCCCCCcccccceecccccCCEecCCceE
Confidence 468889999764322 2566766665332 22 111122222 3444444432 333 5679999999999
Q ss_pred eEEEEE
Q 002570 121 GRVDKV 126 (906)
Q Consensus 121 G~V~~V 126 (906)
|.|.+.
T Consensus 137 g~v~e~ 142 (586)
T PRK04192 137 GTVQET 142 (586)
T ss_pred EEEecC
Confidence 999885
No 43
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=36.22 E-value=44 Score=37.56 Aligned_cols=90 Identities=19% Similarity=0.407 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCcccccc
Q 002570 657 RAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPN 736 (906)
Q Consensus 657 ~~~~kRL~kEl~~L~~~~p~gI~v~~~ed~l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i~HPN 736 (906)
....++|.+|+.+|..+.. +.+. ..+++..++..+.. + .-...+.|.+|.+||..||.+..--+
T Consensus 98 ~~~ys~ll~EIe~IGW~kl--~~i~-~d~~ls~i~l~~~D---~---~R~H~l~l~l~~~yp~~~p~~~~~~P------- 161 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGWDKL--VQIQ-FDDDLSTIKLKIFD---S---SRQHYLELKLPSNYPFEPPSCSLDLP------- 161 (291)
T ss_dssp -GGC-CHHHHHHHHHCGCC--EEEE-E-CCCSEEEEEEET---T---CEEEEEEEETTTTTTTSEEEECS-TT-------
T ss_pred cHHHHHHHHHHHHhccccc--eEEe-cCCCccEEEEEEEc---C---CceEEEEEEECCCCCCCCceeeCCCC-------
Confidence 3446789999999976544 2222 35567888888883 2 24567899999999999997432221
Q ss_pred cCCCCceecccccCCCCCCCCccCCCCcchhhHHHHHHHHhc
Q 002570 737 LYESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVL 778 (906)
Q Consensus 737 Vy~~GkVCLslL~tw~g~~~e~WsP~~~tl~qVL~sIq~Ll~ 778 (906)
+.+. ..|.+..++|..|+...+..|.
T Consensus 162 --------~~~~--------~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 162 --------IPFS--------LSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp --------S-HH--------HHHHCHT-SHHHHHHHHHHHHH
T ss_pred --------cchh--------hhhcccccCHHHHHHHHHHHHH
Confidence 1111 3688844899999988888774
No 44
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=30.53 E-value=62 Score=36.19 Aligned_cols=38 Identities=26% Similarity=0.438 Sum_probs=30.3
Q ss_pred EEeecccCCCCeeeecCCCCCCcEEEEEEeEEEE-EEecCcee
Q 002570 52 LSFDRGFTHGDIVRSVTDPSGQMGRVININMLVD-LEGIPGYI 93 (906)
Q Consensus 52 ~LvDR~f~~GDvVr~~~d~~gQ~G~V~~V~v~vd-L~~~~g~v 93 (906)
.+++|.|..||.|.-. |+.|+|.+++.+.+ |+..+|.+
T Consensus 124 i~~~rpf~vGD~I~i~----~~~G~V~~I~~r~T~i~t~d~~~ 162 (286)
T PRK10334 124 LVMFRPFRAGEYVDLG----GVAGTVLSVQIFSTTMRTADGKI 162 (286)
T ss_pred HHhcCCCCCCCEEEEC----CEEEEEEEEEeEEEEEEcCCCCE
Confidence 4789999999999763 68999999999744 55556654
No 45
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=29.35 E-value=60 Score=32.56 Aligned_cols=25 Identities=36% Similarity=0.806 Sum_probs=23.1
Q ss_pred CCCEEEEEEECCCCCC-CCCCccEEe
Q 002570 703 HDGLFFFDIFLPPEYP-HEPPLVHYI 727 (906)
Q Consensus 703 egG~F~fdI~fP~~YP-~~PP~V~f~ 727 (906)
+.|.|.|.-.+|-.|| ..||.|||.
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 3699999999999999 999999998
No 46
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=28.38 E-value=83 Score=31.14 Aligned_cols=43 Identities=14% Similarity=0.226 Sum_probs=33.1
Q ss_pred CCcccCCCcEEEecCCCCCCCCCCCCceEEEEeecCC---CCEEEEEccccC
Q 002570 327 NSHEFWPDQFVLEKGISDDPHIPSGQRWGVVQGVDAK---ERTVTVQWRAKA 375 (906)
Q Consensus 327 ddhEf~PGd~V~~k~~~~~~~~~~~~~~GVVqsvd~~---eRta~V~W~~~~ 375 (906)
|+-+|=+||+|+-+.... ..-+|.|+.+-.. ..-+.|+||-.+
T Consensus 4 ~~~~i~vGD~V~v~~~~~------~~~va~Ie~i~ed~~g~~~v~v~WF~~p 49 (130)
T cd04721 4 NGVTISVHDFVYVLSEEE------DRYVAYIEDLYEDKKGSKMVKVRWFHTT 49 (130)
T ss_pred CCEEEECCCEEEEeCCCC------CcEEEEEEEEEEcCCCCEEEEEEEecCH
Confidence 556788999999985532 3568999988664 458999999875
No 47
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=28.36 E-value=98 Score=29.41 Aligned_cols=39 Identities=44% Similarity=0.639 Sum_probs=32.7
Q ss_pred CCCcCCCCEEE-eCCeeeEEEEEEee-EEEEeCCCCeeEEc
Q 002570 105 IRSISVGDFVV-LGAWLGRVDKVIDS-VNIVLDDGSKYEVT 143 (906)
Q Consensus 105 i~~~~~GDyVv-~g~WlG~V~~V~~~-v~v~~~dGs~cev~ 143 (906)
+.++..||-|+ .|-=+|+|.+|.++ +.|.+++|...++.
T Consensus 41 l~sL~kGD~VvT~gGi~G~V~~v~d~~v~I~l~~~~~i~~~ 81 (97)
T COG1862 41 LNSLKKGDEVVTIGGIVGTVTKVGDDTVEIELGDGTKIKFE 81 (97)
T ss_pred HHhccCCCEEEEcCCeEEEEEEEecCcEEEEECCCeEEEEE
Confidence 45788999999 67799999999996 88899988776655
No 48
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=26.24 E-value=69 Score=33.06 Aligned_cols=39 Identities=33% Similarity=0.500 Sum_probs=26.0
Q ss_pred EEeecccCCCCeeeecCCCCCCcEEEEEEeEE-EEEEecCceee
Q 002570 52 LSFDRGFTHGDIVRSVTDPSGQMGRVININML-VDLEGIPGYII 94 (906)
Q Consensus 52 ~LvDR~f~~GDvVr~~~d~~gQ~G~V~~V~v~-vdL~~~~g~vi 94 (906)
.+++|.|..||.|.=. |..|+|+++..+ ..|+..+|+++
T Consensus 55 i~~~~pf~vGD~I~i~----~~~G~V~~I~l~~t~l~~~~g~~v 94 (206)
T PF00924_consen 55 ILFERPFKVGDRIEIG----GVEGRVEEIGLRSTRLRTWDGEIV 94 (206)
T ss_dssp HHCC-SS-TT-EEESS----S-EEEEEEE-SSEEEEEETTS-EE
T ss_pred HhccCCccCCCEEEEE----EeehHHHhcCcceeeeecCCCCEE
Confidence 3679999999999765 689999999995 66676777643
No 49
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=25.62 E-value=86 Score=21.83 Aligned_cols=24 Identities=33% Similarity=0.742 Sum_probs=18.4
Q ss_pred cCCCCeeeecC-CCCCCcEEEEEEe
Q 002570 58 FTHGDIVRSVT-DPSGQMGRVININ 81 (906)
Q Consensus 58 f~~GDvVr~~~-d~~gQ~G~V~~V~ 81 (906)
|.+||.|+=.. .-.|+.|+|..++
T Consensus 2 ~~~G~~V~I~~G~~~g~~g~i~~i~ 26 (28)
T smart00739 2 FEVGDTVRVIAGPFKGKVGKVLEVD 26 (28)
T ss_pred CCCCCEEEEeECCCCCcEEEEEEEc
Confidence 67899997553 3368999998875
No 50
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=25.31 E-value=1.9e+02 Score=24.22 Aligned_cols=57 Identities=19% Similarity=0.161 Sum_probs=40.4
Q ss_pred ccCCCcEEEecCCCCCCCCCCCCceEEEEeecCCCCEEEEEccccCCCCCCCCeeeeeeeecccCCC
Q 002570 330 EFWPDQFVLEKGISDDPHIPSGQRWGVVQGVDAKERTVTVQWRAKANSDSDANQSEVSAYELVEHPD 396 (906)
Q Consensus 330 Ef~PGd~V~~k~~~~~~~~~~~~~~GVVqsvd~~eRta~V~W~~~~~~~~~~~eE~VSvYel~~hpd 396 (906)
.|-.|+.|--...++ ..=.-|+|.+++. +....|+-.. .....+|+|..-+|..||+
T Consensus 2 ~~~~G~~Ve~~~~~~-----~~W~~a~V~~~~~-~~~~~V~~~~----~~~~~~e~v~~~~LRp~~~ 58 (61)
T smart00743 2 DFKKGDRVEVFSKEE-----DSWWEAVVTKVLG-DGKYLVRYLT----ESEPLKETVDWSDLRPHPP 58 (61)
T ss_pred CcCCCCEEEEEECCC-----CEEEEEEEEEECC-CCEEEEEECC----CCcccEEEEeHHHcccCCC
Confidence 567888886654321 1233499999998 5568998876 1124789999999999986
No 51
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=25.08 E-value=1.1e+02 Score=31.47 Aligned_cols=40 Identities=25% Similarity=0.234 Sum_probs=26.2
Q ss_pred cCCCcCCCCEEEeCCeeeEEEEEEeeEEE-EeCCCCeeEEc
Q 002570 104 KIRSISVGDFVVLGAWLGRVDKVIDSVNI-VLDDGSKYEVT 143 (906)
Q Consensus 104 ~i~~~~~GDyVv~g~WlG~V~~V~~~v~v-~~~dGs~cev~ 143 (906)
--++|..||+|..+..-|+|+++--..+. +..||...-|+
T Consensus 57 ~~~pf~vGD~I~i~~~~G~V~~I~l~~t~l~~~~g~~v~IP 97 (206)
T PF00924_consen 57 FERPFKVGDRIEIGGVEGRVEEIGLRSTRLRTWDGEIVIIP 97 (206)
T ss_dssp CC-SS-TT-EEESSS-EEEEEEE-SSEEEEEETTS-EEEEE
T ss_pred ccCCccCCCEEEEEEeehHHHhcCcceeeeecCCCCEEEEE
Confidence 35699999999999999999999766555 55677664443
No 52
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=24.74 E-value=94 Score=26.91 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=20.9
Q ss_pred CcceEEeee--cCC--cEEEEecC-Cceeeeecc
Q 002570 440 SCIGIVTGF--KDG--AVEVRWAT-GFTTKVGPN 468 (906)
Q Consensus 440 s~~G~V~~~--~dG--~v~V~w~~-g~~s~v~p~ 468 (906)
.-.|.|+.+ .|| --.|+|.| |+.+.++|-
T Consensus 20 ~r~GeIveV~g~dG~PPY~VRw~D~Ghe~lv~PG 53 (58)
T PF08940_consen 20 DRHGEIVEVRGPDGSPPYLVRWDDTGHESLVFPG 53 (58)
T ss_dssp EEEEEEEE-S-SSS-S-EEEEETTTTEEEEE---
T ss_pred CcEeEEEEEECCCCCCCEEEEecCCCcEEEEeCC
Confidence 458999876 378 78999999 999999883
No 53
>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=24.42 E-value=98 Score=31.16 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=33.5
Q ss_pred CCCcccCCCcEEEecCCCCCCCCCCCCceEEEEeecC---CCCEEEEEccccC
Q 002570 326 VNSHEFWPDQFVLEKGISDDPHIPSGQRWGVVQGVDA---KERTVTVQWRAKA 375 (906)
Q Consensus 326 lddhEf~PGd~V~~k~~~~~~~~~~~~~~GVVqsvd~---~eRta~V~W~~~~ 375 (906)
.|+.+|-+||+|+-+...+ ...-+|.|..+-. ...-++|+||-.+
T Consensus 16 ~dg~~y~vgD~Vlv~~~~~-----~~pyI~~I~~i~~~~~~~~~v~V~WFyRp 63 (146)
T cd04713 16 KDGNKYRLEDCVLLVPEDD-----QKPYIAIIKDIYKQEEGSLKLEVQWLYRP 63 (146)
T ss_pred ECCEEEECCCEEEEeCCCC-----CCCEEEEEEEEEEcCCCCEEEEEEeeECH
Confidence 5789999999999885542 2344787776643 5578999999774
No 54
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=24.09 E-value=1.2e+02 Score=29.32 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=32.1
Q ss_pred CCCcCCCCEEE-eCCeeeEEEEEEee-EEEEeCCCCeeEEcc
Q 002570 105 IRSISVGDFVV-LGAWLGRVDKVIDS-VNIVLDDGSKYEVTA 144 (906)
Q Consensus 105 i~~~~~GDyVv-~g~WlG~V~~V~~~-v~v~~~dGs~cev~~ 144 (906)
+.++.+||-|+ .|-=.|+|.+|.++ ++|.+.+|.+.++..
T Consensus 36 ~~~Lk~GD~VvT~gGi~G~V~~I~d~~v~leia~gv~i~~~r 77 (109)
T PRK05886 36 HESLQPGDRVHTTSGLQATIVGITDDTVDLEIAPGVVTTWMK 77 (109)
T ss_pred HHhcCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEEEh
Confidence 35788999999 78999999999875 566788887766653
No 55
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=23.56 E-value=2.2e+02 Score=35.95 Aligned_cols=70 Identities=13% Similarity=0.244 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEEcCCCCCCCCCEE-EEEEECCCCCCC-CCCccEEecC
Q 002570 658 AWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLF-FFDIFLPPEYPH-EPPLVHYISG 729 (906)
Q Consensus 658 ~~~kRL~kEl~~L~~~~p~gI~v~~~ed~l~~w~~~I~GP~~TPYegG~F-~fdI~fP~~YP~-~PP~V~f~t~ 729 (906)
...+-|..|+..+-...+.=.+-+.+-. -....+.+.||-. +-.+-+| ++.|+||.+||. .||++.|..+
T Consensus 420 ~~pQnLgeE~S~Ig~k~~nV~fEkidva-~Rsctvsln~p~~-~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 420 TLPQNLGEEFSLIGVKIRNVNFEKIDVA-DRSCTVSLNCPNH-RVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhhhHHhHHhHhhccccccceEeeccc-cceEEEEecCCCC-ccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 3456788899887554443221112111 1223445555533 3333333 677899999998 5899999743
No 56
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=23.37 E-value=1.7e+02 Score=26.93 Aligned_cols=38 Identities=29% Similarity=0.540 Sum_probs=30.0
Q ss_pred CCcCCCCEEE-eCCeeeEEEEEEeeE-EEEeCCCCeeEEc
Q 002570 106 RSISVGDFVV-LGAWLGRVDKVIDSV-NIVLDDGSKYEVT 143 (906)
Q Consensus 106 ~~~~~GDyVv-~g~WlG~V~~V~~~v-~v~~~dGs~cev~ 143 (906)
.++.+||.|+ .|-=.|+|.++.++. +|..+.|.++++.
T Consensus 36 ~~L~~Gd~VvT~gGi~G~V~~i~d~~v~vei~~g~~i~~~ 75 (84)
T TIGR00739 36 ESLKKGDKVLTIGGIIGTVTKIAENTIVIELNDNTEITFS 75 (84)
T ss_pred HhCCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEEE
Confidence 4788999999 788999999998764 5567777666555
No 57
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=23.22 E-value=84 Score=33.15 Aligned_cols=26 Identities=27% Similarity=0.581 Sum_probs=23.9
Q ss_pred CCCEEEEEEECCCCCCCCCCccEEec
Q 002570 703 HDGLFFFDIFLPPEYPHEPPLVHYIS 728 (906)
Q Consensus 703 egG~F~fdI~fP~~YP~~PP~V~f~t 728 (906)
+.|.|.|.=.+|--||..||.|||.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 47999999999999999999999983
No 58
>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=23.16 E-value=1.2e+02 Score=33.23 Aligned_cols=42 Identities=29% Similarity=0.475 Sum_probs=33.2
Q ss_pred eEEeecccCCCCeeeecCCCCCCcEEEEEEeEEEEE-EecCceeee
Q 002570 51 FLSFDRGFTHGDIVRSVTDPSGQMGRVININMLVDL-EGIPGYIIK 95 (906)
Q Consensus 51 l~LvDR~f~~GDvVr~~~d~~gQ~G~V~~V~v~vdL-~~~~g~vi~ 95 (906)
+.+++|.|..||.|.-.. +..|+|.+++.+.+. +..+|.++.
T Consensus 141 ~il~~~~f~vGD~I~i~~---~~~G~V~~i~~~~T~ir~~dg~~v~ 183 (316)
T COG0668 141 FLLLERPFKVGDWIEIGS---GVEGTVEDIGLRSTTIRTLDGRIVT 183 (316)
T ss_pred HhheecCcCcCCEEEECC---CceEEEEEEEEEEEEEEcCCCCEEE
Confidence 456799999999998764 479999999998654 456777655
No 59
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=22.47 E-value=1.2e+02 Score=38.81 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=34.4
Q ss_pred eEEeecccCCCCeeeecCCCCCCcEEEEEEeEEEEEEec-Cc-eeeecCCccccc
Q 002570 51 FLSFDRGFTHGDIVRSVTDPSGQMGRVININMLVDLEGI-PG-YIIKDVNSKNIL 103 (906)
Q Consensus 51 l~LvDR~f~~GDvVr~~~d~~gQ~G~V~~V~v~vdL~~~-~g-~vi~~V~s~~L~ 103 (906)
+.|++|.|..||.|.-.. -+|+|..|+++++-... +| +|| ||-+.|.
T Consensus 654 IiL~ErpvkvGD~It~g~----~~G~V~~I~vRAT~I~~fd~~~vI--VPNs~fI 702 (835)
T COG3264 654 IILFERPVKVGDTVTIGT----VSGTVRKISVRATTIRTFDRKEVI--VPNSAFI 702 (835)
T ss_pred hhheecCcccCCEEEECC----ceEEEEEEEeeEEEEEeCCCCeEE--eccHHHH
Confidence 568999999999997653 38999999999776543 44 454 3444443
No 60
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=22.40 E-value=97 Score=31.75 Aligned_cols=25 Identities=32% Similarity=0.643 Sum_probs=22.8
Q ss_pred CCEEEEEEECCCCCC-----CCCCccEEec
Q 002570 704 DGLFFFDIFLPPEYP-----HEPPLVHYIS 728 (906)
Q Consensus 704 gG~F~fdI~fP~~YP-----~~PP~V~f~t 728 (906)
.|.|.|.-.+|--|| ..||.|||.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 589999999999999 8999999983
No 61
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=22.27 E-value=1.3e+02 Score=29.42 Aligned_cols=38 Identities=32% Similarity=0.495 Sum_probs=29.7
Q ss_pred CCCcCCCCEEE-eCCeeeEEEEEEee---EEEEeCCCCeeEEc
Q 002570 105 IRSISVGDFVV-LGAWLGRVDKVIDS---VNIVLDDGSKYEVT 143 (906)
Q Consensus 105 i~~~~~GDyVv-~g~WlG~V~~V~~~---v~v~~~dGs~cev~ 143 (906)
+.++.+||-|+ .|-=+|+|.+|.++ +.|.. +|.++++.
T Consensus 34 ~~sLk~GD~VvT~GGi~G~V~~I~~~~~~v~le~-~gv~i~v~ 75 (113)
T PRK06531 34 LNAIQKGDEVVTIGGLYGTVDEVDTEAKTIVLDV-DGVYLTFE 75 (113)
T ss_pred HHhcCCCCEEEECCCcEEEEEEEecCCCEEEEEE-CCEEEEEE
Confidence 34788999999 89999999999863 55555 77776665
No 62
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=21.73 E-value=1.6e+02 Score=31.84 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=19.6
Q ss_pred EEEEEEECCCCCCCCCCccEEe
Q 002570 706 LFFFDIFLPPEYPHEPPLVHYI 727 (906)
Q Consensus 706 ~F~fdI~fP~~YP~~PP~V~f~ 727 (906)
.|.+.|.++.+||..||.+.+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred cEEEEEEccCCCCCCCcceecc
Confidence 7889999999999999999444
No 63
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=21.48 E-value=5.4e+02 Score=28.21 Aligned_cols=89 Identities=29% Similarity=0.419 Sum_probs=0.0
Q ss_pred EEEEecCCccccccCCceEEeecc----cCCCCeeeecCCCCCCcEEEEEEeE-EEEEEecC----------------ce
Q 002570 34 ATSILSSLEESIGKIDDFLSFDRG----FTHGDIVRSVTDPSGQMGRVININM-LVDLEGIP----------------GY 92 (906)
Q Consensus 34 vr~~w~~g~e~i~~e~~l~LvDR~----f~~GDvVr~~~d~~gQ~G~V~~V~v-~vdL~~~~----------------g~ 92 (906)
||++-.+.. +-.+...+|++ +.+|+.| -++.|..|.|+.|.- ++.+..++ |=
T Consensus 122 A~Vi~~~~~----~~~~~i~Id~G~~~Gv~~g~~V---v~~~GlVG~V~~v~~~~s~V~li~d~~~~v~v~i~~~~~~gi 194 (276)
T PRK13922 122 ARVISRSPD----PWSQQVTIDKGSNDGVKKGMPV---IDPGGLVGRVIEVSPNTSRVLLLTDPNSRVPVQVGRNGIRGI 194 (276)
T ss_pred EEEEEeCCC----CceeEEEEccCcccCCCCCCce---EcCCCCeEEEEEECCCeeEEEEEEcCCCceEEEEEcCCceEE
Q ss_pred eeec-----CCccccccCCCcCCCCEEEe---------CCeeeEEEEEEee
Q 002570 93 IIKD-----VNSKNILKIRSISVGDFVVL---------GAWLGRVDKVIDS 129 (906)
Q Consensus 93 vi~~-----V~s~~L~~i~~~~~GDyVv~---------g~WlG~V~~V~~~ 129 (906)
+--+ ..-+.+-+-.++.+||.|+. |=.||+|.+|..+
T Consensus 195 ~~G~g~~~~l~l~~i~~~~~i~~GD~VvTSGl~g~fP~Gi~VG~V~~v~~~ 245 (276)
T PRK13922 195 LSGNGSGDNLKLEFIPRSADIKVGDLVVTSGLGGIFPAGLPVGKVTSVERD 245 (276)
T ss_pred EEecCCCCceEEEecCCCCCCCCCCEEEECCCCCcCCCCCEEEEEEEEEeC
No 64
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=21.08 E-value=1.7e+02 Score=28.16 Aligned_cols=39 Identities=36% Similarity=0.573 Sum_probs=30.9
Q ss_pred CCCcCCCCEEE-eCCeeeEEEEEEee-EEEEeCCCCeeEEc
Q 002570 105 IRSISVGDFVV-LGAWLGRVDKVIDS-VNIVLDDGSKYEVT 143 (906)
Q Consensus 105 i~~~~~GDyVv-~g~WlG~V~~V~~~-v~v~~~dGs~cev~ 143 (906)
...+.+||-|+ .|-=.|+|.++.++ ++|..++|.+.++.
T Consensus 50 ~~~Lk~Gd~VvT~gGi~G~Vv~i~~~~v~lei~~g~~i~~~ 90 (106)
T PRK05585 50 LSSLAKGDEVVTNGGIIGKVTKVSEDFVIIELNDDTEIKIQ 90 (106)
T ss_pred HHhcCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEEE
Confidence 35788999998 78999999999865 45568888776555
No 65
>PRK09993 C-lysozyme inhibitor; Provisional
Probab=20.46 E-value=2.3e+02 Score=29.15 Aligned_cols=81 Identities=22% Similarity=0.272 Sum_probs=49.0
Q ss_pred EEEeCCCceeeCcCCCceeecccCCCcccCCCcEEE-ecCCCCCCCCCCCCceEEEEeecCCCCEEEEEccccCCCCCCC
Q 002570 303 DVVWQDGSCSVGLDSQALLPVNVVNSHEFWPDQFVL-EKGISDDPHIPSGQRWGVVQGVDAKERTVTVQWRAKANSDSDA 381 (906)
Q Consensus 303 dV~WQDGt~~~~i~st~L~P~~~lddhEf~PGd~V~-~k~~~~~~~~~~~~~~GVVqsvd~~eRta~V~W~~~~~~~~~~ 381 (906)
.|.|++-+.-.| .++ --|+ |++++.. --+.+ +.+.|||.-.||-+.-+.+..|+...+.-..+
T Consensus 67 ~V~~~G~~YlVg----~~C-----KPHD-C~~~rl~V~fs~d------kk~a~Gvlv~vd~k~~~~~l~WL~~~d~~sid 130 (153)
T PRK09993 67 TVTLGDETYQVM----SAC-----KPHD-CGSQRIAVLWSEK------SNQMTGVFSTIDEKTSQEKLTWLNVNDALSID 130 (153)
T ss_pred heeeCCceEEEe----ccc-----cccC-CCcceEEEEEcCC------CcceEEEEEEcCCCcChhheeeecCCCCcccc
Confidence 466777776655 233 3566 6666533 22222 25789999999999999999999986333211
Q ss_pred Cee-eeee--eecccCCC-Ccc
Q 002570 382 NQS-EVSA--YELVEHPD-YSY 399 (906)
Q Consensus 382 ~eE-~VSv--Yel~~hpd-~~~ 399 (906)
... ..-+ =-|+.||| |+|
T Consensus 131 g~tvl~aaltgsl~nhp~~fn~ 152 (153)
T PRK09993 131 GKTVLFAALTGSLENHPDGFNF 152 (153)
T ss_pred cceeeHHhhhCchhcCccccCc
Confidence 111 1111 13677887 655
No 66
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=20.43 E-value=2.1e+02 Score=32.07 Aligned_cols=39 Identities=26% Similarity=0.329 Sum_probs=30.8
Q ss_pred CCCcCCCCEEEeCCeeeEEEEEEeeEE-EEeCCCCeeEEc
Q 002570 105 IRSISVGDFVVLGAWLGRVDKVIDSVN-IVLDDGSKYEVT 143 (906)
Q Consensus 105 i~~~~~GDyVv~g~WlG~V~~V~~~v~-v~~~dGs~cev~ 143 (906)
-++|.+||+|-.|.-.|+|+++.=..| |+..||...-|+
T Consensus 127 ~rpf~vGD~I~i~~~~G~V~~I~~r~T~i~t~d~~~v~IP 166 (286)
T PRK10334 127 FRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIP 166 (286)
T ss_pred cCCCCCCCEEEECCEEEEEEEEEeEEEEEEcCCCCEEEEc
Confidence 479999999999999999999975554 466788764443
No 67
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=20.15 E-value=3e+02 Score=38.91 Aligned_cols=103 Identities=13% Similarity=0.043 Sum_probs=65.3
Q ss_pred CCccccccCCCcCCCCEEEe-CC-----eeeEEEEEE---eeEEEEeCCCCeeEEcccCccccccC--CCCCCCCCCCCc
Q 002570 97 VNSKNILKIRSISVGDFVVL-GA-----WLGRVDKVI---DSVNIVLDDGSKYEVTAVDHEKLLPI--SPSLLEDSQYPY 165 (906)
Q Consensus 97 V~s~~L~~i~~~~~GDyVv~-g~-----WlG~V~~V~---~~v~v~~~dGs~cev~~~d~~~L~~~--~~~~~~d~~~~~ 165 (906)
.+..+.+..+.+.+||.|.+ .. =.++|..|. +.++|.+++|....+. +..|.+. .-.+|.-...++
T Consensus 671 lt~~e~r~~~~Yr~Gdvv~~y~~~~~~~~~y~V~~V~~~~n~L~l~~~dG~~~~~~---p~~l~~~~~~~svy~~~~l~i 747 (1960)
T TIGR02760 671 LTGIQRRNAAHYKQGMVIRFWQKGKIPHDDYVVTNVNKHNNTLTLKDAQGKTQKFK---PSSLKDLERPFSVYRPEQLEV 747 (1960)
T ss_pred CCHHHHhhHhhcCCCCEEEeecccCccCCcEEEEEEeCCCCEEEEEcCCCCEEEEC---HHHhcccccceeeeccccccc
Confidence 45667777889999999995 11 136777776 5788889999875554 3333211 113444445678
Q ss_pred CCCceeEeccCcccccccccCCCCCcceeeEEEEEEeeEEEEEE
Q 002570 166 YPGQRVKVRLSTVKSVSWLCGTGRENQVEGTVCKVDAGLVYVDW 209 (906)
Q Consensus 166 ypGQ~V~~~~~~~~~~~Wl~g~~~~~~~~gtV~~V~~~~v~V~W 209 (906)
..|.+++..-+... ..-.|...+||.+++...+.|.-
T Consensus 748 a~Gdrl~~trn~~~-------~gl~ng~~~tV~~i~~~~i~l~~ 784 (1960)
T TIGR02760 748 AAGERLQVTGNHFH-------SRVRNGELLTVSSINNEGITLIT 784 (1960)
T ss_pred cCCCEEEEccCCcc-------cCccCCCEEEEEEEcCCeEEEEe
Confidence 88888776533221 11123356889999988887764
No 68
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....
Probab=20.00 E-value=1.3e+02 Score=22.35 Aligned_cols=23 Identities=30% Similarity=0.836 Sum_probs=18.0
Q ss_pred CCCeeeecCCC-CCCcEEEEEEeE
Q 002570 60 HGDIVRSVTDP-SGQMGRVININM 82 (906)
Q Consensus 60 ~GDvVr~~~d~-~gQ~G~V~~V~v 82 (906)
+||.|+=.+++ .|+.|.|+.|+-
T Consensus 1 ~Gd~V~V~~G~~~G~~G~I~~i~~ 24 (32)
T PF00467_consen 1 VGDTVKVISGPFKGKIGKIVEIDR 24 (32)
T ss_dssp TTSEEEESSSTTTTEEEEEEEEET
T ss_pred CCCEEEEeEcCCCCceEEEEEEEC
Confidence 58999766544 689999999874
Done!