Query 002570
Match_columns 906
No_of_seqs 301 out of 1723
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 15:44:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002570.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1290-1294//hhsearch_pdb/002570hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ceg_A Baculoviral IAP repeat- 1.0 1 1 388.6 23.1 264 625-896 36-316 (323)
2 2pwq_A Ubiquitin conjugating e 1.0 1 1 275.7 14.0 185 654-852 19-205 (216)
3 1yh2_A HSPC150 protein similar 1.0 1 1 264.2 18.2 165 657-834 3-167 (169)
4 3e46_A Ubiquitin-conjugating e 1.0 1 1 262.5 14.8 174 656-847 55-238 (253)
5 2ayv_A Ubiquitin-conjugating e 1.0 1 1 261.4 17.2 149 655-817 18-166 (166)
6 1ayz_A UBC2, ubiquitin-conjuga 1.0 1 1 258.6 18.0 152 658-823 4-155 (169)
7 3k9o_A Ubiquitin-conjugating e 1.0 1 1 258.0 13.4 144 659-818 6-155 (201)
8 3bzh_A Ubiquitin-conjugating e 1.0 1 1 257.9 17.6 147 655-817 45-193 (194)
9 4ddg_A Ubiquitin-conjugating e 1.0 1 1 257.5 20.9 163 657-838 2-164 (399)
10 2c4o_A Ubiquitin-conjugating e 1.0 1 1 257.0 17.6 150 654-817 15-164 (165)
No 1
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=1.00 E-value=1 Score=388.56 Aligned_cols=264 Identities=36% Similarity=0.652 Sum_probs=229.0
Q ss_pred CCCCCCCEEECCCCCC--------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----CEEEEECCCCCCEEEE
Q ss_conf 8877874241479998--------632245547424513289999999999999954999----5189912799633999
Q 002570 625 SEDQFRQFDMVSDSSD--------HHFLGASKGLALSQVKRAWVKKVQQEWSILEKSLPE----TIYVRIFEDRVDLIRA 692 (906)
Q Consensus 625 ~~~~~~~F~~~~~~~d--------h~~~~~~~~~~~s~~~~~~~kRL~kEl~~L~~~lp~----gI~v~~~ed~l~~w~~ 692 (906)
+..+|.+|+++.+.+| |||.+..... ....+..+.+||++|++.|++++|. ++++.+.++|++.|++
T Consensus 36 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~ 114 (323)
T 3ceg_A 36 KKLQFDTFEMVSEDEDGKLGFKVNYHYMSQVKNA-NDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKV 114 (323)
T ss_dssp HTTSEEEECCEEECTTSCEEESSCCTTHHHHHTC-CCCCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEE
T ss_pred HHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEE
T ss_conf 8716760332156655554545105777654125-777887999999999999986799776531263146777554279
Q ss_pred EEECCCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCC---CCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC-CHHH
Q ss_conf 99859999889988999997899999999921791189---4226665799841014444779999986578875-3465
Q 002570 693 AIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGG---LRVNPNLYESGKVCLSLLNTWTGSGTEVWNPGGS-TILQ 768 (906)
Q Consensus 693 ~I~GP~gTPYegG~F~fdI~fP~~YP~~PP~v~F~t~~---~ifhPNIy~~GkVCLslL~tw~G~~~e~WsP~~s-tL~q 768 (906)
+|.||++|||+||+|.|+|.||++||++||+|+|.|++ .|||||||.+|+|||++|++|.|...+.|+|+ + +|.+
T Consensus 115 ~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa-~stI~~ 193 (323)
T 3ceg_A 115 LITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQ-TSSFLQ 193 (323)
T ss_dssp EEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTT-TCCHHH
T ss_pred EEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEECHHHCCCCCCCCCCCCCC-CCCHHH
T ss_conf 9957999886897789988688878999975799626887555247877478572212024567775777867-587789
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999998227899998446320002144313199999999999999-99998819993079999999997389999999
Q 002570 769 VLLSLQALVLNEKPYFNEAGYDKQIGRAEGEKNSVSYNENAFLVTCK-SMLYLLHKPPKHFKELVEEHFSQRCKYILLAC 847 (906)
Q Consensus 769 VLiSIq~Ll~~p~Py~nEag~e~~~g~~~~~~ns~~Yne~a~~~~~k-~m~~~l~~pp~~Fe~~v~~hf~~~~~~il~~~ 847 (906)
||++||+||++++|++|+|++....+...+.++++.|+++++.++++ +|.+.+++||.+|+++|+.||+.++..|+.+|
T Consensus 194 VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~~~vr~~t~k~A~~~~l~~Pp~~f~~~i~~hF~~~~~~i~~~~ 273 (323)
T 3ceg_A 194 VLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRVEIMAQC 273 (323)
T ss_dssp HHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHHHHHHHHHHHHTTHHHHHSCCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999727898988865788888665014699999999999999836999758894519999999998288999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9986029668778988889877877754999999999999999984799
Q 002570 848 KAYMEGAAVGTASGCKENGENSNGCSVGFKIMLAKLFPKLVEAFSSKGI 896 (906)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~s~gf~~~l~~~~~~l~~~~~~~g~ 896 (906)
++|+++..... .+....+...++..+|++++..|+++|.++--
T Consensus 274 ~~w~~e~~~~~------~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~ 316 (323)
T 3ceg_A 274 EEWIADIQQYS------SDKRVGRTMSHHAAALKRHTAQLREELLKLPC 316 (323)
T ss_dssp HHHHHHHTTC------------CHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99998614302------44220012221799999999999999970699
No 2
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=1.00 E-value=1 Score=275.73 Aligned_cols=185 Identities=25% Similarity=0.344 Sum_probs=154.9
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCC
Q ss_conf 13289999999999999954999518991279963399999859999889988999997899999999921791189422
Q 002570 654 QVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRV 733 (906)
Q Consensus 654 ~~~~~~~kRL~kEl~~L~~~lp~gI~v~~~ed~l~~w~~~I~GP~gTPYegG~F~fdI~fP~~YP~~PP~v~F~t~~~if 733 (906)
.....+.+||++|++.|++++|.||++.+.++|++.|.++|.||++|||+||.|.|+|.||++||++||+|+|.|+ +|
T Consensus 19 ~~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~--i~ 96 (216)
T 2pwq_A 19 FQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTK--IW 96 (216)
T ss_dssp CCSCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--CC
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCC--CC
T ss_conf 4558999999999999985899997999757863305899968999874455899999887768999982535678--76
Q ss_pred CCCCC-CCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHH
Q ss_conf 66657-99841014444779999986578875346579999998227899998446320002144313199999999999
Q 002570 734 NPNLY-ESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGRAEGEKNSVSYNENAFLV 812 (906)
Q Consensus 734 hPNIy-~~GkVCLslL~tw~G~~~e~WsP~~stL~qVLiSIq~Ll~~p~Py~nEag~e~~~g~~~~~~ns~~Yne~a~~~ 812 (906)
||||| .+|+|||++|+ +.|+|+ ++|.+||++||+||.+|+|. .|. . ......+.++...|+++|+.+
T Consensus 97 HPNI~~~~G~ICL~iL~-------~~WsP~-~ti~~VL~sI~sLL~~Pnp~--dPl-n-~eaa~~~~~d~~~f~~~ar~~ 164 (216)
T 2pwq_A 97 HPNISSQTGAICLDVLK-------NEWSPA-LTIRTALLSIQALLSDPQPD--DPQ-D-AEVAKMYKENHALFVKTASVW 164 (216)
T ss_dssp BTTBCTTTCBBCCHHHH-------HHCCTT-CCHHHHHHHHHHHHHSCCTT--SCS-C-HHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCCCCCCEEECHHHC-------CCCCCC-CCHHHHHHHHHHHHHCCCCC--CCC-C-HHHHHHHHHCHHHHHHHHHHH
T ss_conf 77786989978752210-------247887-86999999999998588988--844-6-999999998999999999999
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999881-999307999999999738999999999860
Q 002570 813 TCKSMLYLLH-KPPKHFKELVEEHFSQRCKYILLACKAYME 852 (906)
Q Consensus 813 ~~k~m~~~l~-~pp~~Fe~~v~~hf~~~~~~il~~~~~~~~ 852 (906)
+.+++..--. ......++++..+|...+.....++..|-.
T Consensus 165 t~~ya~~~~~~~~~~~v~~~~~mgf~~~~~~~al~~~~~~~ 205 (216)
T 2pwq_A 165 TKTFATGPKEEPREVIIKKITEMGFSEDQAKNALIKANWNE 205 (216)
T ss_dssp HHHHSCCC---------------------------------
T ss_pred HHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCH
T ss_conf 99865898642013678999974997899999999839746
No 3
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=1.00 E-value=1 Score=264.25 Aligned_cols=165 Identities=27% Similarity=0.459 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 89999999999999954999518991279963399999859999889988999997899999999921791189422666
Q 002570 657 RAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPN 736 (906)
Q Consensus 657 ~~~~kRL~kEl~~L~~~lp~gI~v~~~ed~l~~w~~~I~GP~gTPYegG~F~fdI~fP~~YP~~PP~v~F~t~~~ifhPN 736 (906)
..+.+||++|++.|++++|.||++.+.+++++.|+++|.||++|||+||.|.|+|.||++||++||+|+|.|+ +||||
T Consensus 3 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~--i~HPN 80 (169)
T 1yh2_A 3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTP--IYHPN 80 (169)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--CCBTT
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECC--CCCCC
T ss_conf 6899999999999985899988999679961468999988999871597799999947878999967886258--70564
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 57998410144447799999865788753465799999982278999984463200021443131999999999999999
Q 002570 737 LYESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGRAEGEKNSVSYNENAFLVTCKS 816 (906)
Q Consensus 737 Iy~~GkVCLslL~tw~G~~~e~WsP~~stL~qVLiSIq~Ll~~p~Py~nEag~e~~~g~~~~~~ns~~Yne~a~~~~~k~ 816 (906)
||.+|+|||++|++|.+ +.|+|+ ++|.+||++||+||.+|+|. .|... .....+.++.+.|+++|+.++.++
T Consensus 81 v~~~G~iCl~iL~~~~~---~~W~p~-~~i~~vL~si~~ll~~p~~~--~p~n~--~aa~~~~~~~~~y~~~~r~~~~~~ 152 (169)
T 1yh2_A 81 IDSAGRICLDVLKLPPK---GAWRPS-LNIATVLTSIQLLMSEPNPD--DPLMA--DISSEFKYNKPAFLKNARQWTEKH 152 (169)
T ss_dssp BCTTCBBCCGGGSCTTT---SCCCTT-SCHHHHHHHHHHHHHSCCTT--SCSCH--HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCC---CCCCCC-CCHHHHHHHHHHHHHCCCCC--CHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77699694221048765---577987-81999999999998488976--65769--999998865999999999999987
Q ss_pred HHHHHCCCCCCHHHHHHH
Q ss_conf 999881999307999999
Q 002570 817 MLYLLHKPPKHFKELVEE 834 (906)
Q Consensus 817 m~~~l~~pp~~Fe~~v~~ 834 (906)
+. .++...+++.++.
T Consensus 153 a~---~~~~~~~~~~~~~ 167 (169)
T 1yh2_A 153 AR---QKQKADEEEMLDN 167 (169)
T ss_dssp SC---CC-----------
T ss_pred CC---CCCCCCHHHHHHC
T ss_conf 14---2566777888613
No 4
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=1.00 E-value=1 Score=262.52 Aligned_cols=174 Identities=26% Similarity=0.464 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHHHC---CCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCC
Q ss_conf 289999999999999954---99951899127996339999985999988998899999789999999992179118942
Q 002570 656 KRAWVKKVQQEWSILEKS---LPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLR 732 (906)
Q Consensus 656 ~~~~~kRL~kEl~~L~~~---lp~gI~v~~~ed~l~~w~~~I~GP~gTPYegG~F~fdI~fP~~YP~~PP~v~F~t~~~i 732 (906)
+..+.+||++|++.|+++ ++.+|++.+.++|++.|.++|.||++|||+||.|.|+|.||++||++||+|+|.|+ +
T Consensus 55 s~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~--i 132 (253)
T 3e46_A 55 ANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK--I 132 (253)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC--C
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCC--C
T ss_conf 29999999999999985788999977998789960078999978999884798799999788878999972330477--7
Q ss_pred CCCCCC-CCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--HHHHHHCHHHHHHHH
Q ss_conf 266657-99841014444779999986578875346579999998227899998446320002--144313199999999
Q 002570 733 VNPNLY-ESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIG--RAEGEKNSVSYNENA 809 (906)
Q Consensus 733 fhPNIy-~~GkVCLslL~tw~G~~~e~WsP~~stL~qVLiSIq~Ll~~p~Py~nEag~e~~~g--~~~~~~ns~~Yne~a 809 (906)
|||||| .+|+|||++|. +.|+|+ ++|.+||++||+||.+|+|. ++++. ...+..+...|+++|
T Consensus 133 ~HPNV~~~~G~ICL~iL~-------~~WsP~-~ti~~vL~sI~~ll~~pnp~------~Pln~eaa~l~~~d~~~f~~~a 198 (253)
T 3e46_A 133 WHPNISSVTGAICLDILK-------DQWAAA-MTLRTVLLSLQALLAAAEPD------DPQDAVVANQYKQNPEMFKQTA 198 (253)
T ss_dssp CBTTBCTTTCBBCCGGGT-------TCCCTT-CCHHHHHHHHHHHHHSCCTT------SCSCHHHHHHHHHCHHHHHHHH
T ss_pred CCCCCCCCCCEEECCCCC-------CCCCCC-CCHHHHHHHHHHHHCCCCCC------CHHHHHHHHHHHHCHHHHHHHH
T ss_conf 268765889935562125-------788987-78999999999994699988------7143999999988999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHHHHHHHH
Q ss_conf 999999999988199930799----99999997389999999
Q 002570 810 FLVTCKSMLYLLHKPPKHFKE----LVEEHFSQRCKYILLAC 847 (906)
Q Consensus 810 ~~~~~k~m~~~l~~pp~~Fe~----~v~~hf~~~~~~il~~~ 847 (906)
+.++.+++... .....|++ ++..+|.........+.
T Consensus 199 r~~t~~yA~~~--~~~~~~~~~v~~l~~mgf~~~~~~~al~~ 238 (253)
T 3e46_A 199 RLWAHVYAGAP--VSSPEYTKKIENLCAAGFDRNAVIVALSS 238 (253)
T ss_dssp HHHHHHHHCCS--CCCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCC--CCCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999865556--67604789999999809878999999987
No 5
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=1.00 E-value=1 Score=261.43 Aligned_cols=149 Identities=27% Similarity=0.497 Sum_probs=133.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCCC
Q ss_conf 32899999999999999549995189912799633999998599998899889999978999999999217911894226
Q 002570 655 VKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVN 734 (906)
Q Consensus 655 ~~~~~~kRL~kEl~~L~~~lp~gI~v~~~ed~l~~w~~~I~GP~gTPYegG~F~fdI~fP~~YP~~PP~v~F~t~~~ifh 734 (906)
....+.+||++|++.|+++++.+|++.+.++|++.|.++|.||++|||+||.|.|+|.||++||++||+|+|.|+ +||
T Consensus 18 ~~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~--i~H 95 (166)
T 2ayv_A 18 YFQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTK--IYH 95 (166)
T ss_dssp -CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CCB
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCC--CCC
T ss_conf 676799999999999986799998999747874340699989999983798799998578768988865560367--727
Q ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHH
Q ss_conf 66579984101444477999998657887534657999999822789999844632000214431319999999999999
Q 002570 735 PNLYESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGRAEGEKNSVSYNENAFLVTC 814 (906)
Q Consensus 735 PNIy~~GkVCLslL~tw~G~~~e~WsP~~stL~qVLiSIq~Ll~~p~Py~nEag~e~~~g~~~~~~ns~~Yne~a~~~~~ 814 (906)
||||.+|+|||++|+ +.|+|+ ++|.+||++||+||.+|+|. .|. .......+.++.+.|+++|+.++.
T Consensus 96 PNI~~~G~ICL~iL~-------~~WsP~-~ti~~vL~sI~sll~~pn~~--~Pl--n~~aa~l~~~d~~~f~~~ar~~~~ 163 (166)
T 2ayv_A 96 PNINSQGAICLDILK-------DQWSPA-LTISKVLLSISSLLTDPNPD--DPL--VPEIAHLYKSDRMRYDQTAREWSQ 163 (166)
T ss_dssp TTBCTTCBBCCGGGT-------TTCCTT-CCHHHHHHHHHHHHHSCCTT--SCS--CHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEECCCCC-------CCCCCC-CCHHHHHHHHHHHHHCCCCC--CHH--HHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 748889838713266-------568888-85999999999998489988--614--199999999899999999999999
Q ss_pred HHH
Q ss_conf 999
Q 002570 815 KSM 817 (906)
Q Consensus 815 k~m 817 (906)
+++
T Consensus 164 ~~A 166 (166)
T 2ayv_A 164 KYA 166 (166)
T ss_dssp HHC
T ss_pred HHC
T ss_conf 759
No 6
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=1.00 E-value=1 Score=258.63 Aligned_cols=152 Identities=24% Similarity=0.442 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 99999999999999549995189912799633999998599998899889999978999999999217911894226665
Q 002570 658 AWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNL 737 (906)
Q Consensus 658 ~~~kRL~kEl~~L~~~lp~gI~v~~~ed~l~~w~~~I~GP~gTPYegG~F~fdI~fP~~YP~~PP~v~F~t~~~ifhPNI 737 (906)
.+.+||++|++.|++++|.||++.+.+++++.|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+ +|||||
T Consensus 4 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~--i~HPNI 81 (169)
T 1ayz_A 4 PARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSE--MFHPNV 81 (169)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CCCTTB
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC--CCCCCC
T ss_conf 899999999999986899998999667862244689978999886897789999786447999975520368--835888
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 79984101444477999998657887534657999999822789999844632000214431319999999999999999
Q 002570 738 YESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGRAEGEKNSVSYNENAFLVTCKSM 817 (906)
Q Consensus 738 y~~GkVCLslL~tw~G~~~e~WsP~~stL~qVLiSIq~Ll~~p~Py~nEag~e~~~g~~~~~~ns~~Yne~a~~~~~k~m 817 (906)
|.+|+|||++|. +.|+|+ ++|.+||++||+||..|+|. +|+.. .....+.++.+.|+++|+.++.+++
T Consensus 82 ~~~G~ICl~iL~-------~~WsP~-~~i~~vL~si~~ll~~Pn~~--~P~n~--~aa~~~~~d~~~y~~~~r~~~~~~a 149 (169)
T 1ayz_A 82 YANGEICLDILQ-------NRWTPT-YDVASILTSIQSLFNDPNPA--SPANV--EAATLFKDHKSQYVKRVKETVEKSW 149 (169)
T ss_dssp CTTSBBCCGGGT-------TTCCTT-CCHHHHHHHHHHHHTCCCCS--SCSSH--HHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEHHHC-------CCCCCC-CCHHHHHHHHHHHHHCCCCC--CHHHH--HHHHHHHHCHHHHHHHHHHHHHHHC
T ss_conf 878807203212-------677876-76999999999998589977--67889--9999998899999999999999972
Q ss_pred HHHHCC
Q ss_conf 998819
Q 002570 818 LYLLHK 823 (906)
Q Consensus 818 ~~~l~~ 823 (906)
......
T Consensus 150 ~~~~~~ 155 (169)
T 1ayz_A 150 EDDMDD 155 (169)
T ss_dssp HHHTC-
T ss_pred CCCCCC
T ss_conf 778667
No 7
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=1.00 E-value=1 Score=258.02 Aligned_cols=144 Identities=30% Similarity=0.521 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHC---CCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 999999999999954---99951899127996339999985999988998899999789999999992179118942266
Q 002570 659 WVKKVQQEWSILEKS---LPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNP 735 (906)
Q Consensus 659 ~~kRL~kEl~~L~~~---lp~gI~v~~~ed~l~~w~~~I~GP~gTPYegG~F~fdI~fP~~YP~~PP~v~F~t~~~ifhP 735 (906)
+.+||++|++.|+++ ++.||++.+.+++++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+ +|||
T Consensus 6 a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~HP 83 (201)
T 3k9o_A 6 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK--IWHP 83 (201)
T ss_dssp THHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CCBT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC--CCCC
T ss_conf 99999999999985799999977998789970178999978999998998899999888868999982000367--6067
Q ss_pred CCC-CCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--HHHHHHCHHHHHHHHHHH
Q ss_conf 657-99841014444779999986578875346579999998227899998446320002--144313199999999999
Q 002570 736 NLY-ESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIG--RAEGEKNSVSYNENAFLV 812 (906)
Q Consensus 736 NIy-~~GkVCLslL~tw~G~~~e~WsP~~stL~qVLiSIq~Ll~~p~Py~nEag~e~~~g--~~~~~~ns~~Yne~a~~~ 812 (906)
||| .+|+|||++|. +.|+|+ ++|.+||++||+||.+|+|. ++++. ...+..+...|.++|+.+
T Consensus 84 nv~~~~G~iCl~iL~-------~~W~p~-~~i~~vL~~i~~ll~~p~p~------~p~n~~aa~~~~~~~~~f~~~a~~~ 149 (201)
T 3k9o_A 84 NISSVTGAICLDILK-------DQWAAA-MTLRTVLLSLQALLAAAEPD------DPQDAVVANQYKQNPEMFKQTARLW 149 (201)
T ss_dssp TBCTTTCBBCCGGGT-------TTCCTT-CCHHHHHHHHHHHHHSCCTT------SCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCCCCEEECCCCC-------CCCCCC-CCHHHHHHHHHHHHCCCCCC------CCCCHHHHHHHHHCHHHHHHHHHHH
T ss_conf 775889915673124-------678887-77999999999984299999------7204999999987999999999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q 002570 813 TCKSML 818 (906)
Q Consensus 813 ~~k~m~ 818 (906)
+.+++.
T Consensus 150 ~~~~a~ 155 (201)
T 3k9o_A 150 AHVYAG 155 (201)
T ss_dssp HHHHHC
T ss_pred HHHHCC
T ss_conf 998344
No 8
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=1.00 E-value=1 Score=257.86 Aligned_cols=147 Identities=29% Similarity=0.475 Sum_probs=134.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCCC
Q ss_conf 32899999999999999549995189912799633999998599998899889999978999999999217911894226
Q 002570 655 VKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVN 734 (906)
Q Consensus 655 ~~~~~~kRL~kEl~~L~~~lp~gI~v~~~ed~l~~w~~~I~GP~gTPYegG~F~fdI~fP~~YP~~PP~v~F~t~~~ifh 734 (906)
....+.+||++|++.|++++|.+|++.+.++|++.|+++|.||++|||+||+|.|+|.||++||+.||+|+|.|+ +||
T Consensus 45 ~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~--i~H 122 (194)
T 3bzh_A 45 LLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTR--IYH 122 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CCB
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC--CCC
T ss_conf 543899999999999973899776454156752144589968999870697788877778767888863346678--824
Q ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--HHHHHHCHHHHHHHHHHH
Q ss_conf 665799841014444779999986578875346579999998227899998446320002--144313199999999999
Q 002570 735 PNLYESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIG--RAEGEKNSVSYNENAFLV 812 (906)
Q Consensus 735 PNIy~~GkVCLslL~tw~G~~~e~WsP~~stL~qVLiSIq~Ll~~p~Py~nEag~e~~~g--~~~~~~ns~~Yne~a~~~ 812 (906)
||||.+|+|||++|. +.|+|+ ++|.+||++||+||.+|+|+ ++.+. ...+.++...|+++|+.+
T Consensus 123 PNV~~~G~ICL~iL~-------~~WsP~-~ti~~vL~sI~~ll~~pnp~------~Pln~~aa~l~~~d~~~f~~~ar~~ 188 (194)
T 3bzh_A 123 CNINSQGVICLDILK-------DNWSPA-LTISKVLLSICSLLTDCNPA------DPLVGSIATQYMTNRAEHDRMARQW 188 (194)
T ss_dssp TTBCTTCBBCCGGGT-------TTCCTT-CCHHHHHHHHHHHHHSCCTT------SCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred CEECCCCCEECHHHH-------CCCCCC-CCHHHHHHHHHHHHHCCCCC------CCHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 618889856441021-------158886-83999999999997089976------5056999999998999999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q 002570 813 TCKSM 817 (906)
Q Consensus 813 ~~k~m 817 (906)
+.+++
T Consensus 189 t~~ya 193 (194)
T 3bzh_A 189 TKRYA 193 (194)
T ss_dssp HHHHC
T ss_pred HHHHH
T ss_conf 99961
No 9
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=1.00 E-value=1 Score=257.52 Aligned_cols=163 Identities=25% Similarity=0.413 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 89999999999999954999518991279963399999859999889988999997899999999921791189422666
Q 002570 657 RAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPN 736 (906)
Q Consensus 657 ~~~~kRL~kEl~~L~~~lp~gI~v~~~ed~l~~w~~~I~GP~gTPYegG~F~fdI~fP~~YP~~PP~v~F~t~~~ifhPN 736 (906)
+.+.|||++|++.|++++|+||++.+.++|++.|+++|.||++|||+||.|.|+|.||++||++||+|+|.|+ +||||
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPn 79 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR--IYHPN 79 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSC--CCCTT
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECC--CCCCC
T ss_conf 4789999999999974899988999868854089999977999888898799999878545789817886035--33334
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 57998410144447799999865788753465799999982278999984463200021443131999999999999999
Q 002570 737 LYESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGRAEGEKNSVSYNENAFLVTCKS 816 (906)
Q Consensus 737 Iy~~GkVCLslL~tw~G~~~e~WsP~~stL~qVLiSIq~Ll~~p~Py~nEag~e~~~g~~~~~~ns~~Yne~a~~~~~k~ 816 (906)
|+.+|+|||++|. +.|+|+ ++|.+||++|++||.+|+|. .|. . ......+.++...|.++|+.++.++
T Consensus 80 v~~~G~iCl~il~-------~~W~p~-~~i~~vL~~i~~ll~~pnp~--~p~-n-~~aa~~~~~d~~~y~~~~~~~~~~~ 147 (399)
T 4ddg_A 80 INSNGSISLDILR-------SQWSPA-LTISKVLLSICSLLCDPNPD--DPL-V-PEIARIYKTDREKYNRIAREWTQKY 147 (399)
T ss_dssp BCTTCBBCCGGGT-------TSCCTT-CCHHHHHHHHHHHHHSCCTT--SCS-S-HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEECCCCC-------CCCCCC-CCHHHHHHHHHHHHCCCCCC--CHH-H-HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 2789828674455-------679963-53999999999997299999--604-2-9999999879999999999999985
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 9998819993079999999997
Q 002570 817 MLYLLHKPPKHFKELVEEHFSQ 838 (906)
Q Consensus 817 m~~~l~~pp~~Fe~~v~~hf~~ 838 (906)
+ .++..+.+.|....+.
T Consensus 148 a-----~~~v~~De~i~~q~~~ 164 (399)
T 4ddg_A 148 A-----MGGSAYDEAIMAQQDR 164 (399)
T ss_dssp T-----SCTTHHHHHHHHHHHH
T ss_pred H-----CCCCCHHHHHHHHHHH
T ss_conf 0-----2544116889988888
No 10
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=1.00 E-value=1 Score=256.97 Aligned_cols=150 Identities=27% Similarity=0.460 Sum_probs=134.6
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCC
Q ss_conf 13289999999999999954999518991279963399999859999889988999997899999999921791189422
Q 002570 654 QVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRV 733 (906)
Q Consensus 654 ~~~~~~~kRL~kEl~~L~~~lp~gI~v~~~ed~l~~w~~~I~GP~gTPYegG~F~fdI~fP~~YP~~PP~v~F~t~~~if 733 (906)
+....+.+||++|++.|+++++.||++.+.++|++.|.++|.||++|||+||.|.|+|.||++||++||+|+|.|+ +|
T Consensus 15 ~~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~--i~ 92 (165)
T 2c4o_A 15 PRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR--IY 92 (165)
T ss_dssp -CCHHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CC
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECC--CC
T ss_conf 5775899999999999985799998999757875320799978999974574689999888767899977788568--85
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHH
Q ss_conf 66657998410144447799999865788753465799999982278999984463200021443131999999999999
Q 002570 734 NPNLYESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGRAEGEKNSVSYNENAFLVT 813 (906)
Q Consensus 734 hPNIy~~GkVCLslL~tw~G~~~e~WsP~~stL~qVLiSIq~Ll~~p~Py~nEag~e~~~g~~~~~~ns~~Yne~a~~~~ 813 (906)
|||||.+|+|||++|+ +.|+|+ ++|.+||++||+||.+|+|. +|... .....+.++.+.|+++++.++
T Consensus 93 HPnV~~~G~ICl~iL~-------~~W~P~-~ti~~vL~si~~ll~~pn~~--~P~n~--~aa~~~~~d~~~y~~~ar~~~ 160 (165)
T 2c4o_A 93 HPNINSNGSICLDILR-------SQWSPA-LTISKVLLSICSLLCDPNPD--DPLVP--EIARIYKTDREKYNRIAREWT 160 (165)
T ss_dssp BTTBCTTCBBCCGGGT-------TTCCTT-CCHHHHHHHHHHHHHSCCTT--SCSSH--HHHHHHHHCHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEHHHC-------CCCCCC-CCHHHHHHHHHHHHHCCCCC--CCCCH--HHHHHHHHHHHHHHHHHHHHH
T ss_conf 7759989838605415-------788976-86999999999998589988--62359--999999988999999999999
Q ss_pred HHHH
Q ss_conf 9999
Q 002570 814 CKSM 817 (906)
Q Consensus 814 ~k~m 817 (906)
.+++
T Consensus 161 ~~~a 164 (165)
T 2c4o_A 161 QKYA 164 (165)
T ss_dssp HHTT
T ss_pred HHHH
T ss_conf 9973
Done!