BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002573
         (906 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XHK|A Chain A, Crystal Structure Of M. Jannaschii Lon Proteolytic Domain
 pdb|1XHK|B Chain B, Crystal Structure Of M. Jannaschii Lon Proteolytic Domain
          Length = 187

 Score = 30.4 bits (67), Expect = 4.1,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 11/75 (14%)

Query: 174 GEGDIDLVRLSSLERAEFAADLLEM-----KWSTNLPSSMSRKENVSQILPHDGLDNMVA 228
           G GD+  + +  LE       LL +     K S  L S++S+K    + LP      +  
Sbjct: 19  GIGDVTKIIVQILESKNPGTHLLNISGDIAKHSITLASALSKKLVAEKKLP------LPK 72

Query: 229 KDIQVNNEEIHVDLS 243
           KDI +NN+EI++  S
Sbjct: 73  KDIDLNNKEIYIQFS 87


>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
          Length = 245

 Score = 30.0 bits (66), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 8/112 (7%)

Query: 222 GLDNMVAKDIQVNNEEIHVDLSVDDYERNRNDQSILDKECGSQSEQMASGSHFSSKNLEN 281
           G+ +  A   +++++EI   L   +     + Q+ ++K+    ++  A G  +     E 
Sbjct: 57  GVQDAFADKSKLSDQEIEQTLQAFEARVKSSAQAKMEKDA---ADNEAKGKEYR----EK 109

Query: 282 FVEESGIDVSCLGSVEQVVESSALDESILDENSSIVSELSRTIGEFGVDNAY 333
           F +E G+  S  G V QVVE+    E+  D ++ +V+     I     DN+Y
Sbjct: 110 FAKEKGVKTSSTGLVYQVVEAGK-GEAPKDSDTVVVNYKGTLIDGKEFDNSY 160


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.129    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,195,684
Number of Sequences: 62578
Number of extensions: 1013271
Number of successful extensions: 1911
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1909
Number of HSP's gapped (non-prelim): 7
length of query: 906
length of database: 14,973,337
effective HSP length: 108
effective length of query: 798
effective length of database: 8,214,913
effective search space: 6555500574
effective search space used: 6555500574
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)