Query 002573
Match_columns 906
No_of_seqs 230 out of 316
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 02:43:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2116 Protein involved in pl 100.0 1.1E-86 2.4E-91 735.8 28.1 110 796-905 474-583 (738)
2 COG5083 SMP2 Uncharacterized p 100.0 7.7E-60 1.7E-64 507.0 19.4 102 801-905 327-428 (580)
3 PF04571 Lipin_N: lipin, N-ter 100.0 2.2E-38 4.7E-43 291.6 8.3 92 1-95 1-93 (110)
4 PF08235 LNS2: LNS2 (Lipin/Ned 99.9 1.4E-23 3.1E-28 203.3 3.7 52 854-905 1-52 (157)
5 smart00775 LNS2 LNS2 domain. T 99.6 1.1E-15 2.4E-20 145.6 4.3 52 854-905 1-52 (157)
6 cd01427 HAD_like Haloacid deha 97.2 0.00044 9.6E-09 58.8 4.4 49 854-905 1-49 (139)
7 TIGR01689 EcbF-BcbF capsule bi 96.8 0.0017 3.6E-08 62.1 4.5 49 853-906 2-50 (126)
8 TIGR01662 HAD-SF-IIIA HAD-supe 96.2 0.0059 1.3E-07 55.3 4.2 50 853-905 1-50 (132)
9 TIGR01664 DNA-3'-Pase DNA 3'-p 95.3 0.025 5.4E-07 55.2 4.8 53 851-904 12-66 (166)
10 PF08645 PNK3P: Polynucleotide 94.6 0.061 1.3E-06 52.4 5.5 50 853-903 1-52 (159)
11 TIGR01656 Histidinol-ppas hist 94.6 0.042 9E-07 51.7 4.2 50 853-904 1-51 (147)
12 PRK11009 aphA acid phosphatase 93.5 0.05 1.1E-06 56.8 2.7 52 854-905 65-139 (237)
13 PHA02530 pseT polynucleotide k 93.2 0.12 2.7E-06 53.0 4.9 49 852-906 158-213 (300)
14 TIGR01681 HAD-SF-IIIC HAD-supe 92.9 0.12 2.7E-06 48.0 4.1 52 853-905 1-54 (128)
15 PF13344 Hydrolase_6: Haloacid 92.8 0.14 3.1E-06 46.5 4.2 38 855-904 1-38 (101)
16 TIGR01670 YrbI-phosphatas 3-de 92.8 0.13 2.8E-06 49.2 4.1 48 853-906 2-54 (154)
17 PF03767 Acid_phosphat_B: HAD 92.7 0.099 2.1E-06 53.8 3.5 55 851-905 71-140 (229)
18 TIGR01680 Veg_Stor_Prot vegeta 92.6 0.088 1.9E-06 56.8 3.0 55 852-906 101-171 (275)
19 PLN02645 phosphoglycolate phos 92.4 0.16 3.4E-06 53.9 4.6 42 852-905 28-69 (311)
20 TIGR01672 AphA HAD superfamily 92.4 0.12 2.5E-06 54.1 3.5 52 854-905 65-139 (237)
21 TIGR01533 lipo_e_P4 5'-nucleot 91.9 0.12 2.6E-06 54.9 3.0 54 852-905 75-143 (266)
22 PRK09484 3-deoxy-D-manno-octul 91.7 0.18 3.9E-06 49.5 3.8 49 851-905 20-73 (183)
23 TIGR01663 PNK-3'Pase polynucle 91.7 0.19 4.2E-06 58.0 4.6 54 850-904 166-221 (526)
24 PLN02887 hydrolase family prot 91.4 0.23 4.9E-06 58.0 4.7 54 842-906 298-351 (580)
25 PLN02954 phosphoserine phospha 90.9 0.13 2.8E-06 50.3 1.9 58 847-905 8-109 (224)
26 TIGR01261 hisB_Nterm histidino 90.1 0.36 7.9E-06 47.2 4.2 52 852-904 1-53 (161)
27 TIGR00338 serB phosphoserine p 89.5 0.24 5.2E-06 48.3 2.5 54 852-905 14-110 (219)
28 PRK10187 trehalose-6-phosphate 86.9 0.93 2E-05 47.3 4.9 47 852-906 14-63 (266)
29 TIGR01675 plant-AP plant acid 84.5 1.1 2.3E-05 47.3 4.1 55 852-906 77-146 (229)
30 PRK14502 bifunctional mannosyl 84.0 1.1 2.5E-05 53.7 4.4 44 852-906 416-459 (694)
31 TIGR01668 YqeG_hyp_ppase HAD s 82.6 2.1 4.5E-05 41.7 4.9 45 850-904 23-67 (170)
32 TIGR01684 viral_ppase viral ph 80.7 2.2 4.7E-05 47.0 4.7 53 844-905 119-171 (301)
33 PRK14501 putative bifunctional 72.8 4.4 9.5E-05 48.0 4.7 49 851-905 491-540 (726)
34 PHA03398 viral phosphatase sup 72.8 4.5 9.7E-05 44.7 4.4 53 843-904 120-172 (303)
35 COG4850 Uncharacterized conser 72.8 3.3 7.1E-05 46.6 3.4 61 845-905 154-222 (373)
36 TIGR01549 HAD-SF-IA-v1 haloaci 70.1 2.7 5.9E-05 38.7 1.8 23 883-905 67-89 (154)
37 PF03031 NIF: NLI interacting 67.6 5.2 0.00011 37.8 3.1 52 853-905 1-60 (159)
38 PRK11133 serB phosphoserine ph 64.5 4.1 8.9E-05 44.4 2.1 25 882-906 183-207 (322)
39 PLN02779 haloacid dehalogenase 64.3 6.6 0.00014 41.5 3.5 23 883-905 147-169 (286)
40 PRK14988 GMP/IMP nucleotidase; 63.9 6.2 0.00013 39.9 3.1 23 882-904 95-117 (224)
41 PRK08238 hypothetical protein; 62.8 6.9 0.00015 45.0 3.5 55 851-905 9-97 (479)
42 PRK11590 hypothetical protein; 60.7 4.4 9.5E-05 40.5 1.3 18 851-868 5-22 (211)
43 PLN03017 trehalose-phosphatase 59.3 11 0.00024 42.5 4.3 48 848-905 107-157 (366)
44 PRK03669 mannosyl-3-phosphogly 54.9 7.1 0.00015 40.3 1.8 41 850-892 5-61 (271)
45 PF13464 DUF4115: Domain of un 53.8 16 0.00035 31.8 3.5 25 43-75 37-61 (77)
46 smart00577 CPDc catalytic doma 52.8 24 0.00052 33.7 4.8 53 852-905 2-69 (148)
47 PLN02177 glycerol-3-phosphate 42.0 13 0.00029 43.1 1.6 16 852-867 22-37 (497)
48 PRK13222 phosphoglycolate phos 37.5 17 0.00038 35.4 1.3 23 883-905 96-118 (226)
49 PLN02423 phosphomannomutase 34.9 21 0.00046 37.0 1.6 46 853-900 8-77 (245)
50 PLN02205 alpha,alpha-trehalose 34.8 47 0.001 41.2 4.6 47 851-905 595-642 (854)
51 PF12689 Acid_PPase: Acid Phos 32.3 56 0.0012 33.3 4.0 53 852-904 3-69 (169)
52 PRK13223 phosphoglycolate phos 32.3 17 0.00036 38.1 0.3 14 853-866 14-27 (272)
53 PRK10856 cytoskeletal protein 30.6 38 0.00082 37.6 2.7 28 43-78 290-317 (331)
54 PLN02151 trehalose-phosphatase 30.5 65 0.0014 36.4 4.5 51 848-905 94-144 (354)
55 cd00051 EFh EF-hand, calcium b 30.3 19 0.00042 26.7 0.3 38 858-896 12-49 (63)
56 PRK10748 flavin mononucleotide 27.7 38 0.00083 34.5 2.0 16 852-867 10-25 (238)
57 PF11019 DUF2608: Protein of u 27.3 36 0.00079 36.1 1.8 56 851-906 19-107 (252)
58 KOG0647 mRNA export protein (c 26.2 32 0.00069 38.8 1.2 62 820-881 250-317 (347)
59 COG3977 Alanine-alpha-ketoisov 24.8 22 0.00047 40.4 -0.4 44 840-886 334-386 (417)
60 smart00557 IG_FLMN Filamin-typ 24.8 1E+02 0.0022 27.6 3.9 45 28-81 45-92 (93)
61 PRK13225 phosphoglycolate phos 24.6 32 0.00069 36.6 0.8 17 851-867 61-77 (273)
62 PLN03243 haloacid dehalogenase 24.1 49 0.0011 34.9 2.0 19 849-867 21-39 (260)
63 COG5663 Uncharacterized conser 23.9 39 0.00084 35.7 1.2 15 855-869 9-23 (194)
64 PRK05927 hypothetical protein; 23.9 58 0.0013 36.2 2.7 38 856-899 298-336 (350)
65 PRK13226 phosphoglycolate phos 23.3 42 0.00092 33.9 1.4 24 882-905 97-120 (229)
66 TIGR02251 HIF-SF_euk Dullard-l 22.7 1E+02 0.0022 30.3 3.7 52 853-905 2-66 (162)
67 PRK13606 LPPG:FO 2-phospho-L-l 21.6 36 0.00079 37.8 0.5 42 851-892 216-257 (303)
68 cd05484 retropepsin_like_LTR_2 21.5 2.7E+02 0.006 24.4 5.9 65 810-881 25-90 (91)
69 PLN02770 haloacid dehalogenase 21.0 51 0.0011 33.9 1.4 23 883-905 111-133 (248)
70 COG1778 Low specificity phosph 20.8 54 0.0012 34.2 1.5 12 853-864 9-20 (170)
71 PF06941 NT5C: 5' nucleotidase 20.2 95 0.0021 30.7 3.0 24 882-905 75-98 (191)
No 1
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-86 Score=735.75 Aligned_cols=110 Identities=54% Similarity=0.894 Sum_probs=107.0
Q ss_pred cccccccceeeecCCCHHHHhhCCCCCCCCeeEEEEEeecCceeEEEEEEEEEeCCCeEEEEccCCceeccccccccccc
Q 002573 796 CKTNMAKKKIKVLTPTSEQLASLNLKEGKNSVTFTFSTAMLGKQQVDARIYLWKWNTRIVISDVDGTITKSDVLGQFMPL 875 (906)
Q Consensus 796 ~~~~~~kk~~rtLrlTSeQL~sLnLk~G~N~I~FsV~T~~qG~~~vea~IYLW~~~dkIVISDIDGTITKSDvLGHilp~ 875 (906)
..+..+++|+|+||||||||++||||+|+|.|+|+|+|+|||+|+|+|+||||+|++|||||||||||||||||||||||
T Consensus 474 sse~~~~qy~rtLrltSEQL~sLnLk~G~N~v~FsisT~~~Gt~~c~~~IYlWkWn~kIVISDIDGTITKSDvLGh~lp~ 553 (738)
T KOG2116|consen 474 SSENPRPQYVRTLRLTSEQLKSLNLKDGKNDVVFSISTQYQGTAQCEGNIYLWKWNDKIVISDIDGTITKSDVLGHVLPM 553 (738)
T ss_pred CCCCcchhhhhhcccCHHHHhhcCCccCCceeEEEEEecccceEEEeeEEEEEecCCcEEEecCCCceEhhhhhhhhhhh
Confidence 34467889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHhhhCCeEEEEEeec
Q 002573 876 VGVDWSQTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 876 lGkDWTH~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
|||||||.|||+||++|++|||||||||||
T Consensus 554 iGkDWTh~GVAkLyt~Ik~NGYk~lyLSAR 583 (738)
T KOG2116|consen 554 IGKDWTHTGVAKLYTKIKENGYKILYLSAR 583 (738)
T ss_pred hcCcchhhhHHHHHHHHHhCCeeEEEEehh
Confidence 999999999999999999999999999998
No 2
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=100.00 E-value=7.7e-60 Score=506.98 Aligned_cols=102 Identities=40% Similarity=0.655 Sum_probs=98.6
Q ss_pred ccceeeecCCCHHHHhhCCCCCCCCeeEEEEEeecCceeEEEEEEEEEeCCCeEEEEccCCceecccccccccccccccc
Q 002573 801 AKKKIKVLTPTSEQLASLNLKEGKNSVTFTFSTAMLGKQQVDARIYLWKWNTRIVISDVDGTITKSDVLGQFMPLVGVDW 880 (906)
Q Consensus 801 ~kk~~rtLrlTSeQL~sLnLk~G~N~I~FsV~T~~qG~~~vea~IYLW~~~dkIVISDIDGTITKSDvLGHilp~lGkDW 880 (906)
.+.+.++|||+++||++|||++|.|.+.|.|. .|.+.|+++||+|+|+.|||||||||||||||+|||++.|+||||
T Consensus 327 ~~d~~~tiklnsdqLr~LnLkyGkn~lkf~V~---g~~a~~t~~ifvwr~n~kiVVsDiDGTITkSD~~Ghv~~miGkdw 403 (580)
T COG5083 327 VTDYNGTIKLNSDQLRNLNLKYGKNLLKFYVE---GGKAIATMYIFVWRNNKKIVVSDIDGTITKSDALGHVKQMIGKDW 403 (580)
T ss_pred eecccceEEcCChHHhcccCccCcceEEEEEc---CCccEEEEEEEEEeCCCcEEEEecCCcEEehhhHHHHHHHhccch
Confidence 45677899999999999999999999999997 689999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHhhhCCeEEEEEeec
Q 002573 881 SQTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 881 TH~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
||.||||||++|.+|||+|+|||||
T Consensus 404 th~gVAkLYtdI~rNGYkI~YltsR 428 (580)
T COG5083 404 THNGVAKLYTDIDRNGYKIKYLTSR 428 (580)
T ss_pred hhcchhhhhhhhccCceEEEEEecc
Confidence 9999999999999999999999998
No 3
>PF04571 Lipin_N: lipin, N-terminal conserved region; InterPro: IPR007651 Mutations in the lipin gene lead to fatty liver dystrophy in mice. The protein has been shown to be phosphorylated by the TOR Ser/Thr protein kinases in response to insulin stimulation. This entry represents a conserved domain found at the N terminus of the member proteins [, ].
Probab=100.00 E-value=2.2e-38 Score=291.62 Aligned_cols=92 Identities=55% Similarity=0.893 Sum_probs=85.0
Q ss_pred Cccc-cccccccccceeeccCCCcCCCCceeEEEEecCCCccccCCceEeccccccccccCCcEEEEEECCeecceeeee
Q 002573 1 MYTV-GRIGSYISRGVYTVSAPFHPFGGAVDIIVVEQPDGSFKSSPWYVRFGKFQGVLKTKEKVVTINVNGVDANFNMYL 79 (906)
Q Consensus 1 M~yV-Grl~s~Is~~~y~~s~pf~tLSGAIDVIVVeqpDGsl~sSPFHVRFGKlqgvLr~~eK~V~I~VNG~~~d~~MKL 79 (906)
|||| ||+.+.++. +|...|| +||||||||||||||||+|+||||||||||+ ++||+++|+|+|.|||++++++|||
T Consensus 1 M~yv~~~i~~~v~~-~~~~~np-atlSGAiDVIVV~q~DGs~~sSPFhVRFGk~-~vl~~~ek~V~I~VNG~~~~~~MkL 77 (110)
T PF04571_consen 1 MNYVAGRIFSSVSE-VYNPINP-ATLSGAIDVIVVEQPDGSLKSSPFHVRFGKL-GVLRPREKVVDIEVNGKPVDFHMKL 77 (110)
T ss_pred CceehHhHhhhHHH-HhccCCc-ccccCceeEEEEecCCCCEecCccEEEEcce-eeecccCcEEEEEECCEEcceEEEE
Confidence 9999 999888875 4444466 7999999999999999999999999999999 5999999999999999999999999
Q ss_pred CCCccEEEEeeccccc
Q 002573 80 DHKGEAYFLKEADVEE 95 (906)
Q Consensus 80 g~~GEAfFv~etd~~~ 95 (906)
|++|||||+++++++.
T Consensus 78 g~~GeAfFv~e~~~~~ 93 (110)
T PF04571_consen 78 GENGEAFFVEETEDDE 93 (110)
T ss_pred CCCcEEEEEEecCCCc
Confidence 9999999999997764
No 4
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=99.88 E-value=1.4e-23 Score=203.29 Aligned_cols=52 Identities=50% Similarity=0.915 Sum_probs=51.5
Q ss_pred EEEEccCCceeccccccccccccccccccchhHHHHHHhhhCCeEEEEEeec
Q 002573 854 IVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 854 IVISDIDGTITKSDvLGHilp~lGkDWTH~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
||||||||||||||++|||+|++|+||+|+|||+||++|++|||+|||||||
T Consensus 1 VVvsDIDGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaR 52 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHILPILGKDWTHPGAAELYRKIADNGYKILYLTAR 52 (157)
T ss_pred CEEEeccCCcCccchhhhhhhccCchhhhhcHHHHHHHHHHCCeEEEEECcC
Confidence 7999999999999999999999999999999999999999999999999998
No 5
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=99.57 E-value=1.1e-15 Score=145.63 Aligned_cols=52 Identities=56% Similarity=0.961 Sum_probs=51.3
Q ss_pred EEEEccCCceeccccccccccccccccccchhHHHHHHhhhCCeEEEEEeec
Q 002573 854 IVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 854 IVISDIDGTITKSDvLGHilp~lGkDWTH~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
|||||||||||+||++||+++++|++|+|+|++++|+++++|||+|+|||+|
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a~~~l~~~G~~ivy~TGR 52 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQNNGYKILYLTAR 52 (157)
T ss_pred CEEEecCCCCcccccccccccccccCcCCHHHHHHHHHHHHcCCeEEEEcCC
Confidence 6999999999999999999999999999999999999999999999999998
No 6
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.20 E-value=0.00044 Score=58.82 Aligned_cols=49 Identities=22% Similarity=0.131 Sum_probs=42.9
Q ss_pred EEEEccCCceeccccccccccccccccccchhHHHHHHhhhCCeEEEEEeec
Q 002573 854 IVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 854 IVISDIDGTITKSDvLGHilp~lGkDWTH~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
++|.|+|||+++.+...+. .......+|+.+++.+++++||++..+|++
T Consensus 1 ~~vfD~D~tl~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~ 49 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE---IEELELYPGVKEALKELKEKGIKLALATNK 49 (139)
T ss_pred CeEEccCCceEccCccccc---cccCCcCcCHHHHHHHHHHCCCeEEEEeCc
Confidence 5899999999999887776 345567899999999999999999999986
No 7
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=96.75 E-value=0.0017 Score=62.09 Aligned_cols=49 Identities=20% Similarity=0.155 Sum_probs=37.5
Q ss_pred eEEEEccCCceeccccccccccccccccccchhHHHHHHhhhCCeEEEEEeecC
Q 002573 853 RIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKVGGIFILYFYFSF 906 (906)
Q Consensus 853 kIVISDIDGTITKSDvLGHilp~lGkDWTH~GVAkLyskI~~NGYkiLYLSA~~ 906 (906)
|.|++||||||+..+ -|... .+=-++++.+...+++++||+|++.|||.
T Consensus 2 K~i~~DiDGTL~~~~-~~~y~----~~~~~~~~ie~L~~l~~~G~~IiiaTGR~ 50 (126)
T TIGR01689 2 KRLVMDLDNTITLTE-NGDYA----NVAPILAVIEKLRHYKALGFEIVISSSRN 50 (126)
T ss_pred CEEEEeCCCCcccCC-CCccc----ccccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 689999999998653 22110 01146789999999999999999999994
No 8
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=96.17 E-value=0.0059 Score=55.32 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=37.4
Q ss_pred eEEEEccCCceeccccccccccccccccccchhHHHHHHhhhCCeEEEEEeec
Q 002573 853 RIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 853 kIVISDIDGTITKSDvLGHilp~lGkDWTH~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
|+|++|+||||+.+ ++.+--.+.-.-.+|+..+...+++.||++..+|.+
T Consensus 1 k~~~~D~dgtL~~~---~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~ 50 (132)
T TIGR01662 1 KGVVLDLDGTLTDD---VPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQ 50 (132)
T ss_pred CEEEEeCCCceecC---CCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECC
Confidence 68999999999932 222221222224599999999999999999999974
No 9
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=95.25 E-value=0.025 Score=55.17 Aligned_cols=53 Identities=21% Similarity=0.443 Sum_probs=45.1
Q ss_pred CCeEEEEccCCceeccccccccccccccccc--cchhHHHHHHhhhCCeEEEEEee
Q 002573 851 NTRIVISDVDGTITKSDVLGQFMPLVGVDWS--QTGVAHLFSAIKVGGIFILYFYF 904 (906)
Q Consensus 851 ~dkIVISDIDGTITKSDvLGHilp~lGkDWT--H~GVAkLyskI~~NGYkiLYLSA 904 (906)
..|+++.|+||||++.+- ++.++.-=.||. .+||..+..+++++||++.-+|.
T Consensus 12 ~~k~~~~D~Dgtl~~~~~-~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN 66 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRS-GKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTN 66 (166)
T ss_pred cCcEEEEeCCCceEecCC-CCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeC
Confidence 468899999999998662 455667778995 59999999999999999999985
No 10
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=94.59 E-value=0.061 Score=52.45 Aligned_cols=50 Identities=28% Similarity=0.468 Sum_probs=39.0
Q ss_pred eEEEEccCCceecccccccccccccccc--ccchhHHHHHHhhhCCeEEEEEe
Q 002573 853 RIVISDVDGTITKSDVLGQFMPLVGVDW--SQTGVAHLFSAIKVGGIFILYFY 903 (906)
Q Consensus 853 kIVISDIDGTITKSDvLGHilp~lGkDW--TH~GVAkLyskI~~NGYkiLYLS 903 (906)
||...|.||||.+..- |...+.=-.|| -++||.+...+++++||+|+-+|
T Consensus 1 Kia~fD~DgTLi~~~s-~~~f~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvT 52 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKS-GKKFPKDPDDWKFFPPGVPEALRELHKKGYKIVIVT 52 (159)
T ss_dssp SEEEE-SCTTTEE-ST-STTS-SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEE
T ss_pred CEEEEeCCCCccCCCC-CCcCcCCHHHhhhcchhHHHHHHHHHhcCCeEEEEe
Confidence 7899999999887766 65566545676 67899999999999999999887
No 11
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=94.56 E-value=0.042 Score=51.65 Aligned_cols=50 Identities=18% Similarity=0.309 Sum_probs=37.8
Q ss_pred eEEEEccCCceecccccccccccccccc-ccchhHHHHHHhhhCCeEEEEEee
Q 002573 853 RIVISDVDGTITKSDVLGQFMPLVGVDW-SQTGVAHLFSAIKVGGIFILYFYF 904 (906)
Q Consensus 853 kIVISDIDGTITKSDvLGHilp~lGkDW-TH~GVAkLyskI~~NGYkiLYLSA 904 (906)
+++|.|+|||||.--... +.. ...+| -.+|+..++..++++||++.-+|.
T Consensus 1 ~~~~~d~dgtl~~~~~~~-~~~-~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn 51 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSD-YPR-SLDDWQLRPGAVPALLTLRAAGYTVVVVTN 51 (147)
T ss_pred CeEEEeCCCceeccCCcc-cCC-CHHHeEEcCChHHHHHHHHHCCCEEEEEeC
Confidence 578999999998644322 111 22334 378999999999999999999986
No 12
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=93.52 E-value=0.05 Score=56.79 Aligned_cols=52 Identities=21% Similarity=0.144 Sum_probs=35.8
Q ss_pred EEEEccCCceecc-cc--cccc-c-c----cc------------ccccc--cchhHHHHHHhhhCCeEEEEEeec
Q 002573 854 IVISDVDGTITKS-DV--LGQF-M-P----LV------------GVDWS--QTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 854 IVISDIDGTITKS-Dv--LGHi-l-p----~l------------GkDWT--H~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
.||.||||||+-| -. .|.- + | .+ ....+ .+|+-+|+..++++|++|.|+|+|
T Consensus 65 av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR 139 (237)
T PRK11009 65 AVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGR 139 (237)
T ss_pred EEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCC
Confidence 7899999999964 32 2211 1 0 00 01112 345999999999999999999997
No 13
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.19 E-value=0.12 Score=52.99 Aligned_cols=49 Identities=29% Similarity=0.350 Sum_probs=40.0
Q ss_pred CeEEEEccCCceeccccccccccccccccc-------cchhHHHHHHhhhCCeEEEEEeecC
Q 002573 852 TRIVISDVDGTITKSDVLGQFMPLVGVDWS-------QTGVAHLFSAIKVGGIFILYFYFSF 906 (906)
Q Consensus 852 dkIVISDIDGTITKSDvLGHilp~lGkDWT-------H~GVAkLyskI~~NGYkiLYLSA~~ 906 (906)
.++++.|+||||....-.++ ++|+ -+|+..+..+++++||+++++|+|.
T Consensus 158 ~~~~~~D~dgtl~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~ 213 (300)
T PHA02530 158 PKAVIFDIDGTLAKMGGRSP------YDWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRD 213 (300)
T ss_pred CCEEEEECCCcCcCCCCCCc------cchhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCC
Confidence 46899999999997644333 3564 6899999999999999999999873
No 14
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=92.94 E-value=0.12 Score=48.03 Aligned_cols=52 Identities=13% Similarity=0.427 Sum_probs=36.7
Q ss_pred eEEEEccCCceecccc--ccccccccccccccchhHHHHHHhhhCCeEEEEEeec
Q 002573 853 RIVISDVDGTITKSDV--LGQFMPLVGVDWSQTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 853 kIVISDIDGTITKSDv--LGHilp~lGkDWTH~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
|++|+|+|||++-... ..+ .+.++.+=--+|+..+...++++||++.-+|++
T Consensus 1 kli~~DlD~Tl~~~~~~~~~~-~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~ 54 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVGE-DPIIDLEVTIKEIRDKLQTLKKNGFLLALASYN 54 (128)
T ss_pred CEEEEeCCCCCCCCCcccccC-CcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCC
Confidence 6899999999994432 111 111222223569999999999999999988875
No 15
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=92.80 E-value=0.14 Score=46.46 Aligned_cols=38 Identities=18% Similarity=0.362 Sum_probs=31.9
Q ss_pred EEEccCCceeccccccccccccccccccchhHHHHHHhhhCCeEEEEEee
Q 002573 855 VISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKVGGIFILYFYF 904 (906)
Q Consensus 855 VISDIDGTITKSDvLGHilp~lGkDWTH~GVAkLyskI~~NGYkiLYLSA 904 (906)
|++|+||||.. |... =+|.+.++..++++|+++++||-
T Consensus 1 ~l~D~dGvl~~-----------g~~~-ipga~e~l~~L~~~g~~~~~lTN 38 (101)
T PF13344_consen 1 FLFDLDGVLYN-----------GNEP-IPGAVEALDALRERGKPVVFLTN 38 (101)
T ss_dssp EEEESTTTSEE-----------TTEE--TTHHHHHHHHHHTTSEEEEEES
T ss_pred CEEeCccEeEe-----------CCCc-CcCHHHHHHHHHHcCCCEEEEeC
Confidence 68999999986 2222 57999999999999999999984
No 16
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=92.77 E-value=0.13 Score=49.22 Aligned_cols=48 Identities=23% Similarity=0.310 Sum_probs=33.0
Q ss_pred eEEEEccCCceecccc----cccccccccccc-ccchhHHHHHHhhhCCeEEEEEeecC
Q 002573 853 RIVISDVDGTITKSDV----LGQFMPLVGVDW-SQTGVAHLFSAIKVGGIFILYFYFSF 906 (906)
Q Consensus 853 kIVISDIDGTITKSDv----LGHilp~lGkDW-TH~GVAkLyskI~~NGYkiLYLSA~~ 906 (906)
|+|++|||||++.--+ .|+. +++ | ..+|. ....++++||++.-+|++.
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~---~~~-~~~~~~~--~i~~Lk~~G~~i~IvTn~~ 54 (154)
T TIGR01670 2 RLLILDVDGVLTDGKIYYTNNGEE---IKA-FNVRDGY--GIRCALKSGIEVAIITGRK 54 (154)
T ss_pred eEEEEeCceeEEcCeEEECCCCcE---EEE-EechhHH--HHHHHHHCCCEEEEEECCC
Confidence 7899999999994211 1221 223 3 33343 6888999999999999863
No 17
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=92.71 E-value=0.099 Score=53.83 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=38.0
Q ss_pred CCeEEEEccCCceec-cccccc-ccccc---cccc----------ccchhHHHHHHhhhCCeEEEEEeec
Q 002573 851 NTRIVISDVDGTITK-SDVLGQ-FMPLV---GVDW----------SQTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 851 ~dkIVISDIDGTITK-SDvLGH-ilp~l---GkDW----------TH~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
.-..||.|||+|+.- +.-.++ ++.-- .++| .=+|+.+||..+.++|++|+|+|.|
T Consensus 71 ~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R 140 (229)
T PF03767_consen 71 KPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGR 140 (229)
T ss_dssp SEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEE
T ss_pred CCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecC
Confidence 446789999999772 222111 21111 1334 3478999999999999999999998
No 18
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=92.59 E-value=0.088 Score=56.76 Aligned_cols=55 Identities=9% Similarity=0.083 Sum_probs=39.2
Q ss_pred CeEEEEccCCcee-ccccccc-ccc---ccccccc-----------cchhHHHHHHhhhCCeEEEEEeecC
Q 002573 852 TRIVISDVDGTIT-KSDVLGQ-FMP---LVGVDWS-----------QTGVAHLFSAIKVGGIFILYFYFSF 906 (906)
Q Consensus 852 dkIVISDIDGTIT-KSDvLGH-ilp---~lGkDWT-----------H~GVAkLyskI~~NGYkiLYLSA~~ 906 (906)
...||.|||+|+. .+.-.++ .+. .=.+.|. =+|+.+||+.+.++|++|+|||.|.
T Consensus 101 ~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~ 171 (275)
T TIGR01680 101 KDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRL 171 (275)
T ss_pred CCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999987 3333222 111 0023364 5788999999999999999999984
No 19
>PLN02645 phosphoglycolate phosphatase
Probab=92.43 E-value=0.16 Score=53.87 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=36.3
Q ss_pred CeEEEEccCCceeccccccccccccccccccchhHHHHHHhhhCCeEEEEEeec
Q 002573 852 TRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 852 dkIVISDIDGTITKSDvLGHilp~lGkDWTH~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
-++|++|||||+.+.+ ++ =+|+.++..+++++|++|++||.+
T Consensus 28 ~~~~~~D~DGtl~~~~---~~---------~~ga~e~l~~lr~~g~~~~~~TN~ 69 (311)
T PLN02645 28 VETFIFDCDGVIWKGD---KL---------IEGVPETLDMLRSMGKKLVFVTNN 69 (311)
T ss_pred CCEEEEeCcCCeEeCC---cc---------CcCHHHHHHHHHHCCCEEEEEeCC
Confidence 4799999999998864 22 378899999999999999999975
No 20
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=92.37 E-value=0.12 Score=54.07 Aligned_cols=52 Identities=21% Similarity=0.173 Sum_probs=40.6
Q ss_pred EEEEccCCceecccc---cccccc-------ccccc-cc----------cch--hHHHHHHhhhCCeEEEEEeec
Q 002573 854 IVISDVDGTITKSDV---LGQFMP-------LVGVD-WS----------QTG--VAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 854 IVISDIDGTITKSDv---LGHilp-------~lGkD-WT----------H~G--VAkLyskI~~NGYkiLYLSA~ 905 (906)
-|+.|||||++-|.. +|.-.+ ++|.. |. -++ +..|+..++++||++.|+|+|
T Consensus 65 aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr 139 (237)
T TIGR01672 65 AVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGR 139 (237)
T ss_pred EEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCC
Confidence 689999999999988 675532 23433 42 333 889999999999999999987
No 21
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=91.87 E-value=0.12 Score=54.93 Aligned_cols=54 Identities=17% Similarity=0.307 Sum_probs=40.0
Q ss_pred CeEEEEccCCceeccc-cccc-ccccc---cccc----------ccchhHHHHHHhhhCCeEEEEEeec
Q 002573 852 TRIVISDVDGTITKSD-VLGQ-FMPLV---GVDW----------SQTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 852 dkIVISDIDGTITKSD-vLGH-ilp~l---GkDW----------TH~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
-+.||.|||+|+.-.. ..|+ ++.-- .++| .-+|+.+++..+++.|+++.|+|.|
T Consensus 75 p~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR 143 (266)
T TIGR01533 75 KYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNR 143 (266)
T ss_pred CCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCC
Confidence 4589999999996443 2222 22221 2467 3489999999999999999999987
No 22
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=91.73 E-value=0.18 Score=49.51 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=33.6
Q ss_pred CCeEEEEccCCceeccccccccccc--ccccccc---chhHHHHHHhhhCCeEEEEEeec
Q 002573 851 NTRIVISDVDGTITKSDVLGQFMPL--VGVDWSQ---TGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 851 ~dkIVISDIDGTITKSDvLGHilp~--lGkDWTH---~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
.-|+|++|||||+|...+ ++-+. .-+.|+. .|+..| +++||++..+|.+
T Consensus 20 ~ikli~~D~Dgtl~~~~i--~~~~~~~~~~~~~~~d~~~i~~L----~~~Gi~v~I~T~~ 73 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLI--YMGNNGEELKAFNVRDGYGIRCL----LTSGIEVAIITGR 73 (183)
T ss_pred CceEEEEcCCeeeecCEE--EEcCCCCEEEEEeccchHHHHHH----HHCCCEEEEEeCC
Confidence 578999999999998754 22221 1133444 466555 4689999999976
No 23
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=91.70 E-value=0.19 Score=58.01 Aligned_cols=54 Identities=26% Similarity=0.372 Sum_probs=45.6
Q ss_pred CCCeEEEEccCCceeccccccccccccccccc--cchhHHHHHHhhhCCeEEEEEee
Q 002573 850 WNTRIVISDVDGTITKSDVLGQFMPLVGVDWS--QTGVAHLFSAIKVGGIFILYFYF 904 (906)
Q Consensus 850 ~~dkIVISDIDGTITKSDvLGHilp~lGkDWT--H~GVAkLyskI~~NGYkiLYLSA 904 (906)
...||+..|.||||.+. .-|..+|.--.||. .+||..+..+++++||+|.-+|.
T Consensus 166 ~~~Kia~fD~DGTLi~t-~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTN 221 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKT-KSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTN 221 (526)
T ss_pred ccCcEEEEECCCCcccc-CCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEEC
Confidence 44699999999999864 23677777777885 89999999999999999998885
No 24
>PLN02887 hydrolase family protein
Probab=91.36 E-value=0.23 Score=58.00 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=43.7
Q ss_pred EEEEEEEeCCCeEEEEccCCceeccccccccccccccccccchhHHHHHHhhhCCeEEEEEeecC
Q 002573 842 DARIYLWKWNTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKVGGIFILYFYFSF 906 (906)
Q Consensus 842 ea~IYLW~~~dkIVISDIDGTITKSDvLGHilp~lGkDWTH~GVAkLyskI~~NGYkiLYLSA~~ 906 (906)
.+.+-.++..-|+|++|||||+..+| ++| .+-..+-..+++++|++|+..|+|.
T Consensus 298 ~~~~~~~~~~iKLIa~DLDGTLLn~d--~~I---------s~~t~eAI~kl~ekGi~~vIATGR~ 351 (580)
T PLN02887 298 EGSLRFYKPKFSYIFCDMDGTLLNSK--SQI---------SETNAKALKEALSRGVKVVIATGKA 351 (580)
T ss_pred hcchhhhccCccEEEEeCCCCCCCCC--Ccc---------CHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 34667788889999999999999876 222 4556788889999999999999883
No 25
>PLN02954 phosphoserine phosphatase
Probab=90.94 E-value=0.13 Score=50.35 Aligned_cols=58 Identities=19% Similarity=0.382 Sum_probs=40.8
Q ss_pred EEeCCCeEEEEccCCceecccccccccccccc-------------------------------cc-------------cc
Q 002573 847 LWKWNTRIVISDVDGTITKSDVLGQFMPLVGV-------------------------------DW-------------SQ 882 (906)
Q Consensus 847 LW~~~dkIVISDIDGTITKSDvLGHilp~lGk-------------------------------DW-------------TH 882 (906)
||. +-|+||.|.|||||.+|.+-.++-.+|. .+ ..
T Consensus 8 ~~~-~~k~viFDfDGTL~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (224)
T PLN02954 8 LWR-SADAVCFDVDSTVCVDEGIDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLFKPSLSQVEEFLEKRPPRLS 86 (224)
T ss_pred HHc-cCCEEEEeCCCcccchHHHHHHHHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHccCCCC
Confidence 563 4799999999999999874332211110 11 13
Q ss_pred chhHHHHHHhhhCCeEEEEEeec
Q 002573 883 TGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 883 ~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
+|+..+...++++|+++.-+|+.
T Consensus 87 pg~~e~l~~l~~~g~~~~IvS~~ 109 (224)
T PLN02954 87 PGIPELVKKLRARGTDVYLVSGG 109 (224)
T ss_pred ccHHHHHHHHHHCCCEEEEECCC
Confidence 78888999999999998888875
No 26
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=90.13 E-value=0.36 Score=47.19 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=40.1
Q ss_pred CeEEEEccCCceecccccccccccccccc-ccchhHHHHHHhhhCCeEEEEEee
Q 002573 852 TRIVISDVDGTITKSDVLGQFMPLVGVDW-SQTGVAHLFSAIKVGGIFILYFYF 904 (906)
Q Consensus 852 dkIVISDIDGTITKSDvLGHilp~lGkDW-TH~GVAkLyskI~~NGYkiLYLSA 904 (906)
.||+..|.|||++. +.-+++....=.+| --+||..+...++++||++.-+|.
T Consensus 1 ~~~~~~d~dg~l~~-~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN 53 (161)
T TIGR01261 1 QKILFIDRDGTLIE-EPPSDFQVDALEKLRFEKGVIPALLKLKKAGYKFVMVTN 53 (161)
T ss_pred CCEEEEeCCCCccc-cCCCccccCCHHHeeECCCHHHHHHHHHHCCCeEEEEeC
Confidence 48999999999998 33344444332233 569999999999999999999985
No 27
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=89.55 E-value=0.24 Score=48.27 Aligned_cols=54 Identities=19% Similarity=0.347 Sum_probs=36.7
Q ss_pred CeEEEEccCCceecccccccccccccccc-------------------------------------------ccchhHHH
Q 002573 852 TRIVISDVDGTITKSDVLGQFMPLVGVDW-------------------------------------------SQTGVAHL 888 (906)
Q Consensus 852 dkIVISDIDGTITKSDvLGHilp~lGkDW-------------------------------------------TH~GVAkL 888 (906)
-|+||.|+||||+.++.+=.++...|..+ ..+|+..+
T Consensus 14 ~k~iiFD~DGTL~~~~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 93 (219)
T TIGR00338 14 KKLVVFDMDSTLINAETIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLKGLPVELLKEVRENLPLTEGAEEL 93 (219)
T ss_pred CCEEEEeCcccCCCchHHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCHHHHHHHHhcCCcCCCHHHH
Confidence 46999999999999886323332222210 13577777
Q ss_pred HHHhhhCCeEEEEEeec
Q 002573 889 FSAIKVGGIFILYFYFS 905 (906)
Q Consensus 889 yskI~~NGYkiLYLSA~ 905 (906)
...++++||++.-+|+.
T Consensus 94 l~~l~~~g~~~~IvS~~ 110 (219)
T TIGR00338 94 VKTLKEKGYKVAVISGG 110 (219)
T ss_pred HHHHHHCCCEEEEECCC
Confidence 78888888888888764
No 28
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=86.94 E-value=0.93 Score=47.34 Aligned_cols=47 Identities=9% Similarity=-0.043 Sum_probs=35.9
Q ss_pred CeEEEEccCCceecc--ccccccccccccccccchhHHHHHHhhh-CCeEEEEEeecC
Q 002573 852 TRIVISDVDGTITKS--DVLGQFMPLVGVDWSQTGVAHLFSAIKV-GGIFILYFYFSF 906 (906)
Q Consensus 852 dkIVISDIDGTITKS--DvLGHilp~lGkDWTH~GVAkLyskI~~-NGYkiLYLSA~~ 906 (906)
..+|++|+|||++.. +--.+ ..++.......++.+ +|.+|..+|.|.
T Consensus 14 ~~li~~D~DGTLl~~~~~p~~~--------~i~~~~~~~L~~L~~~~g~~v~i~SGR~ 63 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPHPDQV--------VVPDNILQGLQLLATANDGALALISGRS 63 (266)
T ss_pred CEEEEEecCCCCCCCCCCcccc--------cCCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 689999999999952 00111 235888888999987 899999999883
No 29
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=84.51 E-value=1.1 Score=47.27 Aligned_cols=55 Identities=20% Similarity=0.065 Sum_probs=37.1
Q ss_pred CeEEEEccCCceeccc--cccccccc-------------cccccccchhHHHHHHhhhCCeEEEEEeecC
Q 002573 852 TRIVISDVDGTITKSD--VLGQFMPL-------------VGVDWSQTGVAHLFSAIKVGGIFILYFYFSF 906 (906)
Q Consensus 852 dkIVISDIDGTITKSD--vLGHilp~-------------lGkDWTH~GVAkLyskI~~NGYkiLYLSA~~ 906 (906)
-..||.|||-|+.-.- ...|.+.- -|+-=.-+|+.+||.+++++|++|+|||.|.
T Consensus 77 ~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~ 146 (229)
T TIGR01675 77 MDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRW 146 (229)
T ss_pred CcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3568999999975322 11222211 1122245788899999999999999999984
No 30
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=84.00 E-value=1.1 Score=53.67 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=34.6
Q ss_pred CeEEEEccCCceeccccccccccccccccccchhHHHHHHhhhCCeEEEEEeecC
Q 002573 852 TRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKVGGIFILYFYFSF 906 (906)
Q Consensus 852 dkIVISDIDGTITKSDvLGHilp~lGkDWTH~GVAkLyskI~~NGYkiLYLSA~~ 906 (906)
.|+|++|+|||++.+|- . .+ +-..+...+++++|++|+-.|+|.
T Consensus 416 ~KLIfsDLDGTLLd~d~--~-------i~--~~t~eAL~~L~ekGI~~VIATGRs 459 (694)
T PRK14502 416 KKIVYTDLDGTLLNPLT--Y-------SY--STALDALRLLKDKELPLVFCSAKT 459 (694)
T ss_pred eeEEEEECcCCCcCCCC--c-------cC--HHHHHHHHHHHHcCCeEEEEeCCC
Confidence 47999999999998765 1 12 234667888999999999999983
No 31
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=82.59 E-value=2.1 Score=41.75 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=37.2
Q ss_pred CCCeEEEEccCCceeccccccccccccccccccchhHHHHHHhhhCCeEEEEEee
Q 002573 850 WNTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKVGGIFILYFYF 904 (906)
Q Consensus 850 ~~dkIVISDIDGTITKSDvLGHilp~lGkDWTH~GVAkLyskI~~NGYkiLYLSA 904 (906)
..-++|+.|+|||+|..+.+ -.++|+..+...++++||++.-+|.
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~~----------~~~pgv~e~L~~Lk~~g~~l~I~Sn 67 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDHN----------EAYPALRDWIEELKAAGRKLLIVSN 67 (170)
T ss_pred CCCCEEEEecCCccccCCCC----------CcChhHHHHHHHHHHcCCEEEEEeC
Confidence 57789999999999965311 1368999999999999999988885
No 32
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=80.67 E-value=2.2 Score=47.03 Aligned_cols=53 Identities=11% Similarity=0.298 Sum_probs=41.7
Q ss_pred EEEEEeCCCeEEEEccCCceeccccccccccccccccccchhHHHHHHhhhCCeEEEEEeec
Q 002573 844 RIYLWKWNTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 844 ~IYLW~~~dkIVISDIDGTITKSDvLGHilp~lGkDWTH~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
.-++|. --++|++|+|||+....-..+| ..+||..+...++++|+++.=.|++
T Consensus 119 ~~~~~~-~~kvIvFDLDgTLi~~~~~v~i--------rdPgV~EaL~~LkekGikLaIaTS~ 171 (301)
T TIGR01684 119 PSKVFE-PPHVVVFDLDSTLITDEEPVRI--------RDPRIYDSLTELKKRGCILVLWSYG 171 (301)
T ss_pred cccccc-cceEEEEecCCCCcCCCCcccc--------CCHHHHHHHHHHHHCCCEEEEEECC
Confidence 347784 4679999999999877543333 2689999999999999999888753
No 33
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=72.79 E-value=4.4 Score=48.03 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=37.0
Q ss_pred CCeEEEEccCCceeccccccccccccccccccchhHHHHHHhhhC-CeEEEEEeec
Q 002573 851 NTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKVG-GIFILYFYFS 905 (906)
Q Consensus 851 ~dkIVISDIDGTITKSDvLGHilp~lGkDWTH~GVAkLyskI~~N-GYkiLYLSA~ 905 (906)
..++|++|+|||+|.-+--.. ..--++.+..+..++.+. |..|..+|.|
T Consensus 491 ~~rLi~~D~DGTL~~~~~~~~------~~~~~~~~~~~L~~L~~d~g~~V~ivSGR 540 (726)
T PRK14501 491 SRRLLLLDYDGTLVPFAPDPE------LAVPDKELRDLLRRLAADPNTDVAIISGR 540 (726)
T ss_pred cceEEEEecCccccCCCCCcc------cCCCCHHHHHHHHHHHcCCCCeEEEEeCC
Confidence 468999999999996321111 011268889999999995 9999999988
No 34
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=72.78 E-value=4.5 Score=44.72 Aligned_cols=53 Identities=13% Similarity=0.345 Sum_probs=40.8
Q ss_pred EEEEEEeCCCeEEEEccCCceeccccccccccccccccccchhHHHHHHhhhCCeEEEEEee
Q 002573 843 ARIYLWKWNTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKVGGIFILYFYF 904 (906)
Q Consensus 843 a~IYLW~~~dkIVISDIDGTITKSDvLGHilp~lGkDWTH~GVAkLyskI~~NGYkiLYLSA 904 (906)
...++|.. -++|+.|+|||+..++--.+| ..+||.++...++++|+++.=+|.
T Consensus 120 ~~~~~~~~-~~~i~~D~D~TL~~~~~~v~i--------rdp~V~EtL~eLkekGikLaIvTN 172 (303)
T PHA03398 120 SESLVWEI-PHVIVFDLDSTLITDEEPVRI--------RDPFVYDSLDELKERGCVLVLWSY 172 (303)
T ss_pred cceeEeee-ccEEEEecCCCccCCCCcccc--------CChhHHHHHHHHHHCCCEEEEEcC
Confidence 34456644 489999999999988543333 258999999999999999988874
No 35
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=72.75 E-value=3.3 Score=46.59 Aligned_cols=61 Identities=21% Similarity=0.192 Sum_probs=46.6
Q ss_pred EEEEeCCCeEEEEccCCceecccccccccc----ccc---cccccchhHHHHHHhhhCC-eEEEEEeec
Q 002573 845 IYLWKWNTRIVISDVDGTITKSDVLGQFMP----LVG---VDWSQTGVAHLFSAIKVGG-IFILYFYFS 905 (906)
Q Consensus 845 IYLW~~~dkIVISDIDGTITKSDvLGHilp----~lG---kDWTH~GVAkLyskI~~NG-YkiLYLSA~ 905 (906)
+-+-+-..--+|||||-||--++|.+--.- +++ .-|+-+||-.+|..+.+-| --|.|+|.+
T Consensus 154 ~~v~~~a~igiISDiDDTV~~T~V~~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnS 222 (373)
T COG4850 154 VPVLNRAGIGIISDIDDTVKVTGVTEGPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNS 222 (373)
T ss_pred ceeecccceeeeeccccceEecccccchHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCC
Confidence 334455556789999999999999664321 122 4578899999999999999 899999864
No 36
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=70.14 E-value=2.7 Score=38.75 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.8
Q ss_pred chhHHHHHHhhhCCeEEEEEeec
Q 002573 883 TGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 883 ~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
+|+.+|+..++++||++.-+|.+
T Consensus 67 ~g~~e~l~~L~~~g~~~~i~T~~ 89 (154)
T TIGR01549 67 RGAADLLKRLKEAGIKLGIISNG 89 (154)
T ss_pred cCHHHHHHHHHHCcCeEEEEeCC
Confidence 89999999999999999888864
No 37
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=67.58 E-value=5.2 Score=37.77 Aligned_cols=52 Identities=12% Similarity=0.127 Sum_probs=36.1
Q ss_pred eEEEEccCCceeccccccccc--------cccccccccchhHHHHHHhhhCCeEEEEEeec
Q 002573 853 RIVISDVDGTITKSDVLGQFM--------PLVGVDWSQTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 853 kIVISDIDGTITKSDvLGHil--------p~lGkDWTH~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
|++|.|+|||+.-+....+.- ..-..-|--||+..|...+.+. |.++-.||.
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~ 60 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSKH-YEVVIWTSA 60 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHHh-ceEEEEEee
Confidence 689999999999887765431 0112345689999999999665 998888874
No 38
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=64.48 E-value=4.1 Score=44.40 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=21.3
Q ss_pred cchhHHHHHHhhhCCeEEEEEeecC
Q 002573 882 QTGVAHLFSAIKVGGIFILYFYFSF 906 (906)
Q Consensus 882 H~GVAkLyskI~~NGYkiLYLSA~~ 906 (906)
-+|+..|...++++||++.-+|+.|
T Consensus 183 ~pGa~elL~~Lk~~G~~~aIvSgg~ 207 (322)
T PRK11133 183 MPGLTELVLKLQALGWKVAIASGGF 207 (322)
T ss_pred ChhHHHHHHHHHHcCCEEEEEECCc
Confidence 3688888999999999999998754
No 39
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=64.31 E-value=6.6 Score=41.51 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=17.9
Q ss_pred chhHHHHHHhhhCCeEEEEEeec
Q 002573 883 TGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 883 ~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
+|+..|...++++||++.-+|..
T Consensus 147 pGv~elL~~L~~~g~~l~IvTn~ 169 (286)
T PLN02779 147 PGVLRLMDEALAAGIKVAVCSTS 169 (286)
T ss_pred hhHHHHHHHHHHCCCeEEEEeCC
Confidence 47777778888888888888753
No 40
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=63.88 E-value=6.2 Score=39.94 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=20.2
Q ss_pred cchhHHHHHHhhhCCeEEEEEee
Q 002573 882 QTGVAHLFSAIKVGGIFILYFYF 904 (906)
Q Consensus 882 H~GVAkLyskI~~NGYkiLYLSA 904 (906)
.+|+..|...++++||++.-+|.
T Consensus 95 ~~g~~e~L~~Lk~~g~~~~i~Tn 117 (224)
T PRK14988 95 REDTVPFLEALKASGKRRILLTN 117 (224)
T ss_pred CCCHHHHHHHHHhCCCeEEEEeC
Confidence 37999999999999999888876
No 41
>PRK08238 hypothetical protein; Validated
Probab=62.82 E-value=6.9 Score=45.04 Aligned_cols=55 Identities=22% Similarity=0.298 Sum_probs=40.2
Q ss_pred CCeEEEEccCCceeccccccc------------------------------ccccccccc----ccchhHHHHHHhhhCC
Q 002573 851 NTRIVISDVDGTITKSDVLGQ------------------------------FMPLVGVDW----SQTGVAHLFSAIKVGG 896 (906)
Q Consensus 851 ~dkIVISDIDGTITKSDvLGH------------------------------ilp~lGkDW----TH~GVAkLyskI~~NG 896 (906)
..+.+|.|+|||++++|.+=- +.-.++-|= -++|+.++-.+.++.|
T Consensus 9 ~~~pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~g~a~lK~~~a~~~~~d~~~lp~~pga~e~L~~lk~~G 88 (479)
T PRK08238 9 RDLPLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLRGKAALKRRLARRVDLDVATLPYNEEVLDYLRAERAAG 88 (479)
T ss_pred CCCCEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHhcHHHHHHHHHhhcCCChhhCCCChhHHHHHHHHHHCC
Confidence 346899999999999998311 111112222 2589999999999999
Q ss_pred eEEEEEeec
Q 002573 897 IFILYFYFS 905 (906)
Q Consensus 897 YkiLYLSA~ 905 (906)
+++.-.||+
T Consensus 89 ~~v~LaTas 97 (479)
T PRK08238 89 RKLVLATAS 97 (479)
T ss_pred CEEEEEeCC
Confidence 999999986
No 42
>PRK11590 hypothetical protein; Provisional
Probab=60.69 E-value=4.4 Score=40.46 Aligned_cols=18 Identities=39% Similarity=0.757 Sum_probs=15.5
Q ss_pred CCeEEEEccCCceecccc
Q 002573 851 NTRIVISDVDGTITKSDV 868 (906)
Q Consensus 851 ~dkIVISDIDGTITKSDv 868 (906)
.-|++|.|+|||||..|.
T Consensus 5 ~~k~~iFD~DGTL~~~d~ 22 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQDM 22 (211)
T ss_pred cceEEEEecCCCCcccch
Confidence 458999999999997775
No 43
>PLN03017 trehalose-phosphatase
Probab=59.30 E-value=11 Score=42.47 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=35.2
Q ss_pred EeCCCeEEEEccCCceeccccccccccccc-cc--cccchhHHHHHHhhhCCeEEEEEeec
Q 002573 848 WKWNTRIVISDVDGTITKSDVLGQFMPLVG-VD--WSQTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 848 W~~~dkIVISDIDGTITKSDvLGHilp~lG-kD--WTH~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
.+-...+|++|+|||++ |++. .+ .-+++......++. +|++|.-+|.|
T Consensus 107 ~~~k~~llflD~DGTL~---------Piv~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR 157 (366)
T PLN03017 107 SRGKQIVMFLDYDGTLS---------PIVDDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGR 157 (366)
T ss_pred hcCCCeEEEEecCCcCc---------CCcCCcccccCCHHHHHHHHHHh-cCCcEEEEeCC
Confidence 34467889999999998 2222 11 24578888888888 78888888877
No 44
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=54.92 E-value=7.1 Score=40.28 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=26.7
Q ss_pred CCCeEEEEccCCceecccc---------------cc-ccccccccccccchhHHHHHHh
Q 002573 850 WNTRIVISDVDGTITKSDV---------------LG-QFMPLVGVDWSQTGVAHLFSAI 892 (906)
Q Consensus 850 ~~dkIVISDIDGTITKSDv---------------LG-Hilp~lGkDWTH~GVAkLyskI 892 (906)
...++|++|+|||++.++- .| +|...=||.+ ..+..++..+
T Consensus 5 ~~~~lI~~DlDGTLL~~~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~--~~i~~~~~~l 61 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHTYDWQPAAPWLTRLREAQVPVILCSSKTA--AEMLPLQQTL 61 (271)
T ss_pred CCCeEEEEeCccCCcCCCCcCcHHHHHHHHHHHHcCCeEEEEcCCCH--HHHHHHHHHh
Confidence 3568999999999997653 23 3444467765 3455555554
No 45
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=53.80 E-value=16 Score=31.79 Aligned_cols=25 Identities=28% Similarity=0.604 Sum_probs=22.1
Q ss_pred cCCceEeccccccccccCCcEEEEEECCeecce
Q 002573 43 SSPWYVRFGKFQGVLKTKEKVVTINVNGVDANF 75 (906)
Q Consensus 43 sSPFHVRFGKlqgvLr~~eK~V~I~VNG~~~d~ 75 (906)
-.||.||+|... -|+|.+||+++++
T Consensus 37 ~~~~~i~iGna~--------~v~v~~nG~~~~~ 61 (77)
T PF13464_consen 37 KEPFRIRIGNAG--------AVEVTVNGKPVDL 61 (77)
T ss_pred CCCEEEEEeCCC--------cEEEEECCEECCC
Confidence 579999999985 3899999999987
No 46
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=52.78 E-value=24 Score=33.68 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=36.9
Q ss_pred CeEEEEccCCceecc---ccccccccccccc------------cccchhHHHHHHhhhCCeEEEEEeec
Q 002573 852 TRIVISDVDGTITKS---DVLGQFMPLVGVD------------WSQTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 852 dkIVISDIDGTITKS---DvLGHilp~lGkD------------WTH~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
.+.+|.|+||||.-+ +..+-..+..+-. +--+|+.++...++ .||++.-.|+.
T Consensus 2 k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~ 69 (148)
T smart00577 2 KKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAG 69 (148)
T ss_pred CcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCC
Confidence 468999999999876 3344333322222 34689999999998 57988777653
No 47
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=42.03 E-value=13 Score=43.10 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=14.3
Q ss_pred CeEEEEccCCceeccc
Q 002573 852 TRIVISDVDGTITKSD 867 (906)
Q Consensus 852 dkIVISDIDGTITKSD 867 (906)
.++++.|+|||||++|
T Consensus 22 ~~~~~FDfDGTLt~~~ 37 (497)
T PLN02177 22 NQTVAADLDGTLLISR 37 (497)
T ss_pred ccEEEEecCCcccCCC
Confidence 4579999999999988
No 48
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=37.51 E-value=17 Score=35.36 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=18.4
Q ss_pred chhHHHHHHhhhCCeEEEEEeec
Q 002573 883 TGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 883 ~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
+|+..+...+++.||++..+|..
T Consensus 96 ~g~~~~l~~l~~~g~~~~i~S~~ 118 (226)
T PRK13222 96 PGVKETLAALKAAGYPLAVVTNK 118 (226)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCC
Confidence 67777778888889998888864
No 49
>PLN02423 phosphomannomutase
Probab=34.91 E-value=21 Score=36.97 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=29.1
Q ss_pred eEEEEccCCceecccc---------------ccccccccccccccchhHHHHHH---------hhhCCeEEE
Q 002573 853 RIVISDVDGTITKSDV---------------LGQFMPLVGVDWSQTGVAHLFSA---------IKVGGIFIL 900 (906)
Q Consensus 853 kIVISDIDGTITKSDv---------------LGHilp~lGkDWTH~GVAkLysk---------I~~NGYkiL 900 (906)
.|+.+|||||+..++- ..+|.+.=||.+ ..+.+.|.. |..||..++
T Consensus 8 ~i~~~D~DGTLl~~~~~i~~~~~~ai~~l~~~i~fviaTGR~~--~~~~~~~~~~~~~~~~~~I~~NGa~i~ 77 (245)
T PLN02423 8 VIALFDVDGTLTAPRKEATPEMLEFMKELRKVVTVGVVGGSDL--SKISEQLGKTVINDYDYVFSENGLVAH 77 (245)
T ss_pred eEEEEeccCCCcCCCCcCCHHHHHHHHHHHhCCEEEEECCcCH--HHHHHHhcccccccCCEEEECCceEEE
Confidence 4666999999997663 256666678855 344444433 456776554
No 50
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=34.81 E-value=47 Score=41.20 Aligned_cols=47 Identities=13% Similarity=0.231 Sum_probs=34.5
Q ss_pred CCeEEEEccCCceeccccccccccccccccccchhHHHHHHh-hhCCeEEEEEeec
Q 002573 851 NTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAI-KVGGIFILYFYFS 905 (906)
Q Consensus 851 ~dkIVISDIDGTITKSDvLGHilp~lGkDWTH~GVAkLyskI-~~NGYkiLYLSA~ 905 (906)
..++|++|+|||++..... +. .-.+++..+..++ +..|..|.-+|.|
T Consensus 595 ~~rlI~LDyDGTLlp~~~~-~~-------~p~~~~~~~L~~L~~d~g~~VaIvSGR 642 (854)
T PLN02205 595 TTRAILLDYDGTLMPQASI-DK-------SPSSKSIDILNTLCRDKNNMVFIVSAR 642 (854)
T ss_pred cCeEEEEecCCcccCCccc-cC-------CCCHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 5689999999999954321 11 1236888888887 6678888888877
No 51
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=32.30 E-value=56 Score=33.29 Aligned_cols=53 Identities=15% Similarity=0.074 Sum_probs=32.4
Q ss_pred CeEEEEccCCceecccccc-------------ccccccc-cccccchhHHHHHHhhhCCeEEEEEee
Q 002573 852 TRIVISDVDGTITKSDVLG-------------QFMPLVG-VDWSQTGVAHLFSAIKVGGIFILYFYF 904 (906)
Q Consensus 852 dkIVISDIDGTITKSDvLG-------------Hilp~lG-kDWTH~GVAkLyskI~~NGYkiLYLSA 904 (906)
-|+||.|+|+|+..=-+-= .+.-.-| .-.-.++|-.....|+++|++|-..|.
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASR 69 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASR 69 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE-
T ss_pred CcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEEC
Confidence 3789999999987432222 3333445 334789999999999999999998873
No 52
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=32.27 E-value=17 Score=38.12 Aligned_cols=14 Identities=50% Similarity=0.866 Sum_probs=12.9
Q ss_pred eEEEEccCCceecc
Q 002573 853 RIVISDVDGTITKS 866 (906)
Q Consensus 853 kIVISDIDGTITKS 866 (906)
|.||.|+||||.-|
T Consensus 14 k~viFDlDGTL~Ds 27 (272)
T PRK13223 14 RLVMFDLDGTLVDS 27 (272)
T ss_pred CEEEEcCCCccccC
Confidence 48999999999988
No 53
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=30.57 E-value=38 Score=37.61 Aligned_cols=28 Identities=18% Similarity=0.468 Sum_probs=23.5
Q ss_pred cCCceEeccccccccccCCcEEEEEECCeecceeee
Q 002573 43 SSPWYVRFGKFQGVLKTKEKVVTINVNGVDANFNMY 78 (906)
Q Consensus 43 sSPFHVRFGKlqgvLr~~eK~V~I~VNG~~~d~~MK 78 (906)
..||.|++|... .|+|++||+++++.=+
T Consensus 290 ~~p~~v~iG~~~--------~v~i~~nG~~vdl~~~ 317 (331)
T PRK10856 290 QAPYKLKIGAPA--------AVQIQYQGKPVDLSRF 317 (331)
T ss_pred CceEEEEEcCCC--------ceEEEECCEEccCCcc
Confidence 359999999985 3799999999998644
No 54
>PLN02151 trehalose-phosphatase
Probab=30.52 E-value=65 Score=36.44 Aligned_cols=51 Identities=8% Similarity=-0.001 Sum_probs=34.7
Q ss_pred EeCCCeEEEEccCCceeccccccccccccccccccchhHHHHHHhhhCCeEEEEEeec
Q 002573 848 WKWNTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 848 W~~~dkIVISDIDGTITKSDvLGHilp~lGkDWTH~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
.+-...+|++|+|||+.. |-+.=..-.-+++......+|. +++.+.-+|.|
T Consensus 94 ~~~~~~ll~lDyDGTL~P------Iv~~P~~A~~~~~~~~aL~~La-~~~~vaIvSGR 144 (354)
T PLN02151 94 SEGKQIVMFLDYDGTLSP------IVDDPDRAFMSKKMRNTVRKLA-KCFPTAIVSGR 144 (354)
T ss_pred hcCCceEEEEecCccCCC------CCCCcccccCCHHHHHHHHHHh-cCCCEEEEECC
Confidence 455667899999999981 1111122235688888888888 45677777876
No 55
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=30.29 E-value=19 Score=26.68 Aligned_cols=38 Identities=24% Similarity=0.425 Sum_probs=32.7
Q ss_pred ccCCceeccccccccccccccccccchhHHHHHHhhhCC
Q 002573 858 DVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKVGG 896 (906)
Q Consensus 858 DIDGTITKSDvLGHilp~lGkDWTH~GVAkLyskI~~NG 896 (906)
|-+|.|+.++ +..++..+|..+++.-+..+|.++..|+
T Consensus 12 ~~~g~l~~~e-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 49 (63)
T cd00051 12 DGDGTISADE-LKAALKSLGEGLSEEEIDEMIREVDKDG 49 (63)
T ss_pred CCCCcCcHHH-HHHHHHHhCCCCCHHHHHHHHHHhCCCC
Confidence 5578899999 7788889999999999999999987554
No 56
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=27.75 E-value=38 Score=34.46 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=13.7
Q ss_pred CeEEEEccCCceeccc
Q 002573 852 TRIVISDVDGTITKSD 867 (906)
Q Consensus 852 dkIVISDIDGTITKSD 867 (906)
-|.||.|+|||+.-+.
T Consensus 10 ~k~iiFDlDGTL~D~~ 25 (238)
T PRK10748 10 ISALTFDLDDTLYDNR 25 (238)
T ss_pred ceeEEEcCcccccCCh
Confidence 4889999999998763
No 57
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=27.27 E-value=36 Score=36.12 Aligned_cols=56 Identities=18% Similarity=0.371 Sum_probs=41.5
Q ss_pred CCeEEEEccCCceeccc-cccc----------ccc----------cccccc------------ccchhHHHHHHhhhCCe
Q 002573 851 NTRIVISDVDGTITKSD-VLGQ----------FMP----------LVGVDW------------SQTGVAHLFSAIKVGGI 897 (906)
Q Consensus 851 ~dkIVISDIDGTITKSD-vLGH----------ilp----------~lGkDW------------TH~GVAkLyskI~~NGY 897 (906)
.+-+||.|||=|+..+- .+|+ +.+ .+..+| +++.+..+++++.+.|.
T Consensus 19 ~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~~ 98 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKGI 98 (252)
T ss_pred CCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCCC
Confidence 56789999999987665 3332 201 112345 57888999999999999
Q ss_pred EEEEEeecC
Q 002573 898 FILYFYFSF 906 (906)
Q Consensus 898 kiLYLSA~~ 906 (906)
.+|=||+|.
T Consensus 99 ~v~alT~~~ 107 (252)
T PF11019_consen 99 PVIALTARG 107 (252)
T ss_pred cEEEEcCCC
Confidence 999999984
No 58
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=26.15 E-value=32 Score=38.81 Aligned_cols=62 Identities=23% Similarity=0.308 Sum_probs=45.6
Q ss_pred CCCCCCeeEEEEEeecCceeEEEEEEEEEeCCCeE--EE-EccCCceecccc--cccccc-ccccccc
Q 002573 820 LKEGKNSVTFTFSTAMLGKQQVDARIYLWKWNTRI--VI-SDVDGTITKSDV--LGQFMP-LVGVDWS 881 (906)
Q Consensus 820 Lk~G~N~I~FsV~T~~qG~~~vea~IYLW~~~dkI--VI-SDIDGTITKSDv--LGHilp-~lGkDWT 881 (906)
+-+--|.|.|--.+.-.-|..-++++-+|+-+.|- -- .-.+++||++.. -|.|+- .+|+||+
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYDWS 317 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYDWS 317 (347)
T ss_pred ceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecccc
Confidence 55677888886643333356678999999988654 33 457899999987 677776 4999994
No 59
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=24.83 E-value=22 Score=40.39 Aligned_cols=44 Identities=27% Similarity=0.668 Sum_probs=32.4
Q ss_pred EEEEEEEEEeCCCeEEEEcc--------CCceecccccc-ccccccccccccchhH
Q 002573 840 QVDARIYLWKWNTRIVISDV--------DGTITKSDVLG-QFMPLVGVDWSQTGVA 886 (906)
Q Consensus 840 ~vea~IYLW~~~dkIVISDI--------DGTITKSDvLG-Hilp~lGkDWTH~GVA 886 (906)
.-|+.||||=|=+.+=|++- -|+|. |-| +|+|-++++|-|.+-|
T Consensus 334 kpEGAIFlWLWf~dLPItt~~LYq~LKa~Gvl~---VPG~~FFpGl~~ewpH~hqC 386 (417)
T COG3977 334 KPEGAIFLWLWFKDLPITTEELYQRLKARGVLM---VPGHYFFPGLDKEWPHTHQC 386 (417)
T ss_pred cCCcceeehhhhccCCCCHHHHHHHHHhCeEEE---ecccccCCCCCCCCCCccce
Confidence 45899999999888877763 25443 234 5789999999887543
No 60
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=24.82 E-value=1e+02 Score=27.58 Aligned_cols=45 Identities=20% Similarity=0.376 Sum_probs=27.3
Q ss_pred ceeEEEEecCCCccccCCceEeccccccccccCCcEEEEEECCeec---ceeeeeCC
Q 002573 28 AVDIIVVEQPDGSFKSSPWYVRFGKFQGVLKTKEKVVTINVNGVDA---NFNMYLDH 81 (906)
Q Consensus 28 AIDVIVVeqpDGsl~sSPFHVRFGKlqgvLr~~eK~V~I~VNG~~~---d~~MKLg~ 81 (906)
.+.+-|....||+|. |+|= .-.+....|.|.+||+++ +|.+++.+
T Consensus 45 ~~~~~v~d~~dGty~-----v~y~----P~~~G~~~i~V~~~g~~I~gSPF~v~V~~ 92 (93)
T smart00557 45 KVPVEVKDNGDGTYT-----VSYT----PTEPGDYTVTVKFGGEHIPGSPFTVKVGP 92 (93)
T ss_pred eeEeEEEeCCCCEEE-----EEEE----eCCCEeEEEEEEECCEECCCCCEEEEEeC
Confidence 355555555666533 3331 223345679999999987 77777643
No 61
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=24.56 E-value=32 Score=36.56 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=14.8
Q ss_pred CCeEEEEccCCceeccc
Q 002573 851 NTRIVISDVDGTITKSD 867 (906)
Q Consensus 851 ~dkIVISDIDGTITKSD 867 (906)
+-+.||.|+||||+-|.
T Consensus 61 ~~k~vIFDlDGTLiDS~ 77 (273)
T PRK13225 61 TLQAIIFDFDGTLVDSL 77 (273)
T ss_pred hcCEEEECCcCccccCH
Confidence 45679999999999996
No 62
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=24.10 E-value=49 Score=34.92 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=16.1
Q ss_pred eCCCeEEEEccCCceeccc
Q 002573 849 KWNTRIVISDVDGTITKSD 867 (906)
Q Consensus 849 ~~~dkIVISDIDGTITKSD 867 (906)
..+.|.||.|+||||.-|.
T Consensus 21 ~~~~k~vIFDlDGTLvDS~ 39 (260)
T PLN03243 21 GCGWLGVVLEWEGVIVEDD 39 (260)
T ss_pred cCCceEEEEeCCCceeCCc
Confidence 3567889999999999984
No 63
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=23.92 E-value=39 Score=35.65 Aligned_cols=15 Identities=40% Similarity=0.612 Sum_probs=12.0
Q ss_pred EEEccCCceeccccc
Q 002573 855 VISDVDGTITKSDVL 869 (906)
Q Consensus 855 VISDIDGTITKSDvL 869 (906)
++.|||||||--+..
T Consensus 9 ~ciDIDGtit~~~t~ 23 (194)
T COG5663 9 CCIDIDGTITDDPTF 23 (194)
T ss_pred eeeccCCceecCccc
Confidence 568999999977653
No 64
>PRK05927 hypothetical protein; Provisional
Probab=23.87 E-value=58 Score=36.23 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=30.2
Q ss_pred EEccCCceeccccccccccccccccccc-hhHHHHHHhhhCCeEE
Q 002573 856 ISDVDGTITKSDVLGQFMPLVGVDWSQT-GVAHLFSAIKVGGIFI 899 (906)
Q Consensus 856 ISDIDGTITKSDvLGHilp~lGkDWTH~-GVAkLyskI~~NGYki 899 (906)
+-|++||||...+. |..| |+|. .+..|-..|++-||..
T Consensus 298 anDlggt~~~e~v~----~~ag--~~~~~~~~~l~~~i~~~G~~~ 336 (350)
T PRK05927 298 ADDFGGTILDESVH----KCTG--WDLQSSEEEICAMILSEGFIP 336 (350)
T ss_pred CccccCCCccceee----ccCC--CCCcCCHHHHHHHHHHcCCCe
Confidence 34799999987554 8888 7763 6999999999999865
No 65
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=23.27 E-value=42 Score=33.86 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=18.5
Q ss_pred cchhHHHHHHhhhCCeEEEEEeec
Q 002573 882 QTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 882 H~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
.+|+..+...++++||++..+|..
T Consensus 97 ~pg~~~~L~~L~~~g~~l~i~Tn~ 120 (229)
T PRK13226 97 FDGVEGMLQRLECAGCVWGIVTNK 120 (229)
T ss_pred CCCHHHHHHHHHHCCCeEEEECCC
Confidence 457777888888889988887753
No 66
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=22.67 E-value=1e+02 Score=30.33 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=35.7
Q ss_pred eEEEEccCCceeccccc-cc------cccccc------cccccchhHHHHHHhhhCCeEEEEEeec
Q 002573 853 RIVISDVDGTITKSDVL-GQ------FMPLVG------VDWSQTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 853 kIVISDIDGTITKSDvL-GH------ilp~lG------kDWTH~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
+.+|.|+|+|+--|-.. +. +-...+ .-|--||+..+...+.++ |.|.-.||.
T Consensus 2 ~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~ 66 (162)
T TIGR02251 2 KTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTAS 66 (162)
T ss_pred cEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCC
Confidence 57999999999866221 00 000111 124679999999999998 998877764
No 67
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=21.64 E-value=36 Score=37.82 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=34.3
Q ss_pred CCeEEEEccCCceeccccccccccccccccccchhHHHHHHh
Q 002573 851 NTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAI 892 (906)
Q Consensus 851 ~dkIVISDIDGTITKSDvLGHilp~lGkDWTH~GVAkLyskI 892 (906)
-.+|-||-|=|-..-|--.+++|..+|..|++.|||++|..+
T Consensus 216 a~vV~Vsp~Ig~~~v~GPA~~lm~a~g~e~s~~gva~~Y~~~ 257 (303)
T PRK13606 216 APVVAVSPIIGGAPVSGPAAKLMAAIGVEVSAAGVAEHYGDL 257 (303)
T ss_pred CCEEEEcCCCCCCcCCChhHHHHHHcCCcchHHHHHHhcccc
Confidence 344557776666677778889999999999999999999766
No 68
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=21.51 E-value=2.7e+02 Score=24.43 Aligned_cols=65 Identities=18% Similarity=0.176 Sum_probs=34.3
Q ss_pred CCHHHHhhCCCCCCCCeeEEEEEeecCceeEEEEEE-EEEeCCCeEEEEccCCceeccccccccccccccccc
Q 002573 810 PTSEQLASLNLKEGKNSVTFTFSTAMLGKQQVDARI-YLWKWNTRIVISDVDGTITKSDVLGQFMPLVGVDWS 881 (906)
Q Consensus 810 lTSeQL~sLnLk~G~N~I~FsV~T~~qG~~~vea~I-YLW~~~dkIVISDIDGTITKSDvLGHilp~lGkDWT 881 (906)
++.+...++++++ .....+.+.+.-.....+.+.+ --|....+. ..++-=|.+.. ..+++|+||.
T Consensus 25 is~~~~~~lg~~~-~~~~~~~v~~a~G~~~~~~G~~~~~v~~~~~~--~~~~~~v~~~~----~~~lLG~~wl 90 (91)
T cd05484 25 ISEKTWRKLGSPP-LKPTKKRLRTATGTKLSVLGQILVTVKYGGKT--KVLTLYVVKNE----GLNLLGRDWL 90 (91)
T ss_pred eCHHHHHHhCCCc-cccccEEEEecCCCEeeEeEEEEEEEEECCEE--EEEEEEEEECC----CCCccChhhc
Confidence 3555556666665 4455556655444444555553 223444432 33333344443 5588999994
No 69
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=21.02 E-value=51 Score=33.89 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=18.6
Q ss_pred chhHHHHHHhhhCCeEEEEEeec
Q 002573 883 TGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 883 ~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
+||..|...++++||++--+|..
T Consensus 111 pgv~e~L~~L~~~g~~l~I~Tn~ 133 (248)
T PLN02770 111 NGLYKLKKWIEDRGLKRAAVTNA 133 (248)
T ss_pred ccHHHHHHHHHHcCCeEEEEeCC
Confidence 57888888888899998888753
No 70
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=20.76 E-value=54 Score=34.17 Aligned_cols=12 Identities=50% Similarity=0.941 Sum_probs=0.0
Q ss_pred eEEEEccCCcee
Q 002573 853 RIVISDVDGTIT 864 (906)
Q Consensus 853 kIVISDIDGTIT 864 (906)
|++|.|||||+|
T Consensus 9 kLli~DVDGvLT 20 (170)
T COG1778 9 KLLILDVDGVLT 20 (170)
T ss_pred eEEEEeccceee
No 71
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=20.21 E-value=95 Score=30.72 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=21.1
Q ss_pred cchhHHHHHHhhhCCeEEEEEeec
Q 002573 882 QTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 882 H~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
.+|..+.+.++.+.||.++|+|||
T Consensus 75 ~~gA~e~l~~L~~~g~~~~~Itar 98 (191)
T PF06941_consen 75 IPGAVEALKKLRDKGHEIVIITAR 98 (191)
T ss_dssp -TTHHHHHHHHHTSTTEEEEEEE-
T ss_pred cHHHHHHHHHHHHcCCcEEEEEec
Confidence 479999999999999999999998
Done!