Query 002573
Match_columns 906
No_of_seqs 221 out of 316
Neff 2.6
Searched_HMMs 29240
Date Tue Mar 26 16:33:24 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002573.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1290-1294//hhsearch_pdb/002573hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2obb_A Hypothetical protein; s 1.0 1 1 37.7 4.6 48 851-905 2-49 (142)
2 3ocu_A Lipoprotein E; hydrolas 1.0 1 1 35.4 4.5 23 883-905 104-126 (262)
3 3pct_A Class C acid phosphatas 1.0 1 1 34.5 4.7 23 883-905 104-126 (260)
4 2p9j_A Hypothetical protein AQ 1.0 1 1 33.8 3.5 10 855-864 12-21 (162)
5 1xpj_A Hypothetical protein; s 1.0 1 1 32.0 5.1 48 853-905 2-49 (126)
6 3dao_A Putative phosphatse; st 1.0 1 1 29.6 4.7 48 847-905 16-64 (283)
7 2b30_A Pvivax hypothetical pro 1.0 1 1 29.6 3.8 42 853-905 28-70 (301)
8 3l7y_A Putative uncharacterize 1.0 1 1 29.3 4.2 43 853-905 38-80 (304)
9 2wm8_A MDP-1, magnesium-depend 1.0 1 1 29.1 4.5 53 853-905 28-93 (187)
10 2o2x_A Hypothetical protein; s 1.0 1 1 28.4 4.7 55 848-905 27-81 (218)
No 1
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=1.00 E-value=1 Score=37.68 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=36.5
Q ss_pred CCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEEEC
Q ss_conf 9808998157750205433343444565544300678888766179279997531
Q 002573 851 NTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 851 ~dkIVISDIDGTITKSDvLGHilp~iGkDWTH~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
+-|+|+.|+||||..++- +.++..- +++.+...++.++||+|+.+|+|
T Consensus 2 ~~k~i~~DlDGTL~~~~~-----~~i~~~~--~~~~~al~~l~~~G~~iii~TgR 49 (142)
T 2obb_A 2 NAMTIAVDFDGTIVEHRY-----PRIGEEI--PFAVETLKLLQQEKHRLILWSVR 49 (142)
T ss_dssp CCCEEEECCBTTTBCSCT-----TSCCCBC--TTHHHHHHHHHHTTCEEEECCSC
T ss_pred CCEEEEEECCCCCCCCCC-----CCCCCCC--HHHHHHHHHHHHCCCEEEEEECC
T ss_conf 970999978678898997-----6546569--89999999999889989999289
No 2
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A
Probab=1.00 E-value=1 Score=35.37 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHHCCEEEEEEEEC
Q ss_conf 00678888766179279997531
Q 002573 883 TGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 883 ~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
+|+..|+..+.+.|+++.|+|+|
T Consensus 104 pG~~ell~~L~~~G~ki~ivTgR 126 (262)
T 3ocu_A 104 PGAVEFNNYVNSHNGKVFYVTNR 126 (262)
T ss_dssp TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred CCHHHHHHHHHHCCCEEEEEECC
T ss_conf 25999999999879949998189
No 3
>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}
Probab=1.00 E-value=1 Score=34.45 Aligned_cols=23 Identities=9% Similarity=0.205 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHHCCEEEEEEEEC
Q ss_conf 00678888766179279997531
Q 002573 883 TGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 883 ~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
+|+..|+..+.+.|+++.|+|.|
T Consensus 104 pg~~ell~~L~~~G~~i~ivTgR 126 (260)
T 3pct_A 104 PGAVEFSNYVNANGGTMFFVSNR 126 (260)
T ss_dssp TTHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCHHHHHHHHHHCCCEEEEEECC
T ss_conf 03999999999879959997089
No 4
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=1.00 E-value=1 Score=33.79 Aligned_cols=10 Identities=50% Similarity=0.959 Sum_probs=3.2
Q ss_pred EEECCCCCEE
Q ss_conf 9981577502
Q 002573 855 VISDVDGTIT 864 (906)
Q Consensus 855 VISDIDGTIT 864 (906)
|+.|+|||++
T Consensus 12 v~~DlDGTL~ 21 (162)
T 2p9j_A 12 LIMDIDGVLT 21 (162)
T ss_dssp EEECCTTTTS
T ss_pred EEEECCCCEE
T ss_conf 9995676258
No 5
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18
Probab=1.00 E-value=1 Score=32.03 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=35.2
Q ss_pred EEEEECCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEEEC
Q ss_conf 08998157750205433343444565544300678888766179279997531
Q 002573 853 RIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 853 kIVISDIDGTITKSDvLGHilp~iGkDWTH~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
|+|+.|+|||++.++.. .+ + ..-...++.....++.++|+++...|.|
T Consensus 2 k~i~~DlDGTL~~~~~~-~~-~---~~~~~~~~~~~l~~l~~~Gi~~~iaTGR 49 (126)
T 1xpj_A 2 KKLIVDLDGTLTQANTS-DY-R---NVLPRLDVIEQLREYHQLGFEIVISTAR 49 (126)
T ss_dssp CEEEECSTTTTBCCCCS-CG-G---GCCBCHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CEEEEECCCCCCCCCCC-CC-C---CCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 79999248888889987-54-3---4788977999999999589969998199
No 6
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=1.00 E-value=1 Score=29.63 Aligned_cols=48 Identities=15% Similarity=0.256 Sum_probs=0.0
Q ss_pred EEECCCEEEEECCCCCEECCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHCCEEEEEEEEC
Q ss_conf 770898089981577502054333434445655-44300678888766179279997531
Q 002573 847 LWKWNTRIVISDVDGTITKSDVLGQFMPLVGVD-WSQTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 847 LW~~~dkIVISDIDGTITKSDvLGHilp~iGkD-WTH~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
.|...-|+|++|+|||+..++ . .-.....+.+.++.++|++|...|.|
T Consensus 16 ~~~~~~kli~~DlDGTLl~~~-----------~~~i~~~~~~al~~l~~~G~~v~iaTGR 64 (283)
T 3dao_A 16 YFQGMIKLIATDIDGTLVKDG-----------SLLIDPEYMSVIDRLIDKGIIFVVCSGR 64 (283)
T ss_dssp ---CCCCEEEECCBTTTBSTT-----------CSCCCHHHHHHHHHHHHTTCEEEEECSS
T ss_pred HHCCCCEEEEEECCCCCCCCC-----------CCCCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 430583099992757788899-----------8838988999999999787989999189
No 7
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10
Probab=1.00 E-value=1 Score=29.55 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=0.0
Q ss_pred EEEEECCCCCEECC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEEEC
Q ss_conf 08998157750205-433343444565544300678888766179279997531
Q 002573 853 RIVISDVDGTITKS-DVLGQFMPLVGVDWSQTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 853 kIVISDIDGTITKS-DvLGHilp~iGkDWTH~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
|+|++|+|||+..+ +-. -.....+...++.++|.+|...|.|
T Consensus 28 kli~~DlDGTLl~~~~~~-----------is~~~~~al~~l~~~Gi~v~iaTGR 70 (301)
T 2b30_A 28 KLLLIDFDGTLFVDKDIK-----------VPSENIDAIKEAIEKGYMVSICTGR 70 (301)
T ss_dssp CEEEEETBTTTBCCTTTC-----------SCHHHHHHHHHHHHHTCEEEEECSS
T ss_pred CEEEEECCCCCCCCCCCC-----------CCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 299998898773788783-----------5999999999999887979997699
No 8
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}
Probab=1.00 E-value=1 Score=29.29 Aligned_cols=43 Identities=14% Similarity=0.300 Sum_probs=0.0
Q ss_pred EEEEECCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEEEC
Q ss_conf 08998157750205433343444565544300678888766179279997531
Q 002573 853 RIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 853 kIVISDIDGTITKSDvLGHilp~iGkDWTH~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
|+|+.|+|||+..++ +.++..-..+.+.++.++|++|...|.|
T Consensus 38 Kli~fDlDGTLld~~----------~~i~~~~~~~al~~l~~~G~~~~iaTGR 80 (304)
T 3l7y_A 38 KVIATDMDGTFLNSK----------GSYDHNRFQRILKQLQERDIRFVVASSN 80 (304)
T ss_dssp SEEEECCCCCCSCTT----------SCCCHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred EEEEEECCCCCCCCC----------CCCCHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 899996778889989----------8519799999999999889989998089
No 9
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=1.00 E-value=1 Score=29.06 Aligned_cols=53 Identities=13% Similarity=-0.058 Sum_probs=0.0
Q ss_pred EEEEECCCCCEECCCCCCCCCCC-------------CCCCCCCCHHHHHHHHHHHCCEEEEEEEEC
Q ss_conf 08998157750205433343444-------------565544300678888766179279997531
Q 002573 853 RIVISDVDGTITKSDVLGQFMPL-------------VGVDWSQTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 853 kIVISDIDGTITKSDvLGHilp~-------------iGkDWTH~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
|+||.|+|||++..-...++-+- ...--..+|+..+...++++||++..+|.+
T Consensus 28 k~vifDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~L~~L~~~G~~v~ivT~~ 93 (187)
T 2wm8_A 28 KLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRT 93 (187)
T ss_dssp SEEEECSBTTTBSSCTTTSSCSCCEECTTSCEECTTCCEECCCTTHHHHHHHHHHHTCCEEEEECC
T ss_pred CEEEECCCCCCCHHHHHHCCCCCHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 899992899812577761468425331242012314862575601999999999779659999589
No 10
>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19
Probab=1.00 E-value=1 Score=28.44 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=0.0
Q ss_pred EECCCEEEEECCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEEEC
Q ss_conf 7089808998157750205433343444565544300678888766179279997531
Q 002573 848 WKWNTRIVISDVDGTITKSDVLGQFMPLVGVDWSQTGVAHLFSAIKVGGIFILYFYFS 905 (906)
Q Consensus 848 W~~~dkIVISDIDGTITKSDvLGHilp~iGkDWTH~GVAkLyskI~~NGYkiLYLSA~ 905 (906)
|...-+.++.|+|||+.... .+.......-..+|+..+...++++||++..+|.+
T Consensus 27 ~~~~~k~i~~D~DGtl~~~~---~y~~~~~~~~~~~g~~e~L~~L~~~G~~~~i~Tn~ 81 (218)
T 2o2x_A 27 FPPHLPALFLDRDGTINVDT---DYPSDPAEIVLRPQMLPAIATANRAGIPVVVVTNQ 81 (218)
T ss_dssp CCSSCCCEEECSBTTTBCCC---SCTTCGGGCCBCGGGHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHCCCEEEEECCCCCCCCC---CCCCCCCCCEECCCHHHHHHHHHHCCCEEEEECCC
T ss_conf 14319999995999729888---65577344849948999999999789979998096
Done!