BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002574
(906 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 179 bits (455), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 211/715 (29%), Positives = 310/715 (43%), Gaps = 142/715 (19%)
Query: 263 TSISVLDLSENSFNSAIPPWLFSLTSLTKL-YLRWNFFTGHIPNEFAN-LKL--LEVLDL 318
S++ LDLS NS + + L SL S + L +L + T P + + LKL LEVLDL
Sbjct: 97 ASLTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 155
Query: 319 SNNLDLGGQLPK--LFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSL 376
S N G + L LK L +S N ++G+V R NLE+LD+SSN+
Sbjct: 156 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD------VSRCVNLEFLDVSSNNF 209
Query: 377 EGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLS 436
+P LG+ LQ+L +SGN G +I + L+ L++S N G IP L
Sbjct: 210 STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLK 266
Query: 437 ELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIE 496
L +L +N + G + + L L+ N Y VPPF
Sbjct: 267 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG--------NHFYGAVPPF-------- 310
Query: 497 NCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPR 556
+ L S+ L + S +P D K+ + L LS N+ G+LP
Sbjct: 311 -----------FGSCSLLESLALSSNNFSGELPMDTLLKMRG-LKVLDLSFNEFSGELPE 358
Query: 557 QMN--SPNLRSIDLSSNHFEG-TLPLWSTNAD----ELFLQDNRFSGPLPENIGSLMPRL 609
+ S +L ++DLSSN+F G LP N EL+LQ+N F+G +P + S L
Sbjct: 359 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSEL 417
Query: 610 QRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTG 669
L+LS+N LSG IPSS+ +L L+ L + N L GE P + + + + N LTG
Sbjct: 418 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 477
Query: 670 SIPXXXXXXXXXXXXXXXXXXXXXXIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSS 729
IP L NCT L I L N+L+G +P WI L +
Sbjct: 478 EIPS------------------------GLSNCTNLNWISLSNNRLTGEIPKWIGR-LEN 512
Query: 730 FFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIP-------------------- 769
+L+L +N SG+IP L + ++L +DL+ N F+G IP
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 572
Query: 770 ----------RCIG------------------------NLSALVYG---------NNSEV 786
C G N+++ VYG N S +
Sbjct: 573 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 632
Query: 787 FQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGA 846
F + + ++ G P+ + + ++L N+++G IPDE+G+L L+IL+LS N+L G
Sbjct: 633 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 692
Query: 847 IPQXXXXXXXXXXXXXXXXXXAGKIPSLPNFND--PSIYEGNPLLCGAPLPTKCP 899
IPQ +G IP + F P+ + NP LCG PLP P
Sbjct: 693 IPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 747
Score = 152 bits (383), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 181/575 (31%), Positives = 252/575 (43%), Gaps = 111/575 (19%)
Query: 155 NLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQXXXXXXXXXXXX 214
NL +L++S ++FS IP LG S+LQ+LD+ + S
Sbjct: 198 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS----------------------- 233
Query: 215 XXXXGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENS 274
D+ +A++ L L + Q G +P + S+ L L+EN
Sbjct: 234 -------------GDFSRAISTCTELKLLNISSNQFVG---PIPPLPLKSLQYLSLAENK 277
Query: 275 FNSAIPPWLF-SLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLP-KLF 332
F IP +L + +LT L L N F G +P F + LLE L LS+N + G+LP
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NFSGELPMDTL 336
Query: 333 GILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGE-LPKSLGNLKN-L 390
+R LK LDLS N +GE+ E S +L LDLSSN+ G LP N KN L
Sbjct: 337 LKMRGLKVLDLSFNEFSGELPESLTNLSA---SLLTLDLSSNNFSGPILPNLCQNPKNTL 393
Query: 391 QYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEG 450
Q L L N F G IP ++ N S L L LS+N ++GTIP S G LS+L D L N EG
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 453
Query: 451 ILQESQFMNLKRLESF-----RLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFP 505
+ + + M +K LE+ LT E + NW I + N ++ P
Sbjct: 454 EIPQ-ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW--------ISLSNNRLTGEIP 504
Query: 506 VWLQVQTELTSVILRNVGISDTIPGD--------WFS---------------KLSSEIT- 541
W+ L + L N S IP + W K S +I
Sbjct: 505 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 564
Query: 542 -------YLILSNNQIK-------------GKLPRQMNSPNLRS-IDLSSNHFEG-TLPL 579
Y+ + N+ +K G Q+N + R+ +++S + G T P
Sbjct: 565 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 624
Query: 580 WSTNADELFLQD--NRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILS 637
+ N +FL N SG +P+ IGS MP L L L N +SG IP V +L L IL
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILD 683
Query: 638 IRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIP 672
+ SNKL G P M ID+SNN+L+G IP
Sbjct: 684 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 144/506 (28%), Positives = 223/506 (44%), Gaps = 62/506 (12%)
Query: 153 LKNLRYLNLSFSSFSGEIPPQL-GSLSSLQYLDLYADSFSSNSGSLALHAQXXXXXXXXX 211
LK+L+YL+L+ + F+GEIP L G+ +L LDL + F G++
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF---YGAVPPFFGSCSLLESLA 321
Query: 212 XXXXXXXGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQG-IPLSLPFINFTSISVLDL 270
G + +D + + L L L + + G +P SL ++ S+ LDL
Sbjct: 322 LSSNNFSGELPMD--------TLLKMRGLKVLDLSFNEFSGELPESLTNLS-ASLLTLDL 372
Query: 271 SENSFNSAIPPWLFS--LTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQL 328
S N+F+ I P L +L +LYL+ N FTG IP +N L L LS N L G +
Sbjct: 373 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY-LSGTI 431
Query: 329 PKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLK 388
P G L +L+ L L N L GE+ + LE L L N L GE+P L N
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQEL----MYVKTLETLILDFNDLTGEIPSGLSNCT 487
Query: 389 NLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSW 448
NL ++ LS N G IP IG L +L L LS N +G IP G L+ +L N +
Sbjct: 488 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 547
Query: 449 EGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWL 508
G + + F ++ + F+ Y ++ +K + C + +
Sbjct: 548 NGTIPAAMFKQSGKIAA---------NFIAGKRYVYIKNDGMK----KECHGAGNLLEFQ 594
Query: 509 QVQTE-LTSVILRN-VGISDTIPGDWFSKL---SSEITYLILSNNQIKGKLPRQMNS-PN 562
+++E L + RN I+ + G S + + +L +S N + G +P+++ S P
Sbjct: 595 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 654
Query: 563 LRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGR 622
L ++L N G++P + +G L L L LS N+L GR
Sbjct: 655 LFILNLGHNDISGSIP---------------------DEVGDLR-GLNILDLSSNKLDGR 692
Query: 623 IPSSVCNLEDLQILSIRSNKLSGEFP 648
IP ++ L L + + +N LSG P
Sbjct: 693 IPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 128/479 (26%), Positives = 199/479 (41%), Gaps = 101/479 (21%)
Query: 139 NDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLS-SLQYLDLYADSFSSNSGSL 197
N+F G + +++ L+ L+LSF+ FSGE+P L +LS SL LDL +++FS
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG----- 379
Query: 198 ALHAQXXXXXXXXXXXXXXXXGFVKLDHVGADWLQAVNMLPSLVE-----LRLHYCQLQG 252
+LP+L + L+ Y Q G
Sbjct: 380 -------------------------------------PILPNLCQNPKNTLQELYLQNNG 402
Query: 253 IPLSLP--FINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANL 310
+P N + + L LS N + IP L SL+ L L L N G IP E +
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Query: 311 KLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLD 370
K LE L L N DL G++P L + LS N L GE+ ++ GR NL L
Sbjct: 463 KTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI----GRLENLAILK 517
Query: 371 LSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPE 430
LS+NS G +P LG+ ++L +L L+ N F G+IP+++ S G I
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS-------------GKIAA 564
Query: 431 SF--GKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPF 488
+F GK + + ++ G +F ++ + RL+T P
Sbjct: 565 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR--------------NPC 610
Query: 489 RLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLI---L 545
+ S ++ P+F + + + +S + + K + YL L
Sbjct: 611 NITS-RVYGGHTSPTFD---------NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 660
Query: 546 SNNQIKGKLPRQMNS-PNLRSIDLSSNHFEGTLPLWS---TNADELFLQDNRFSGPLPE 600
+N I G +P ++ L +DLSSN +G +P T E+ L +N SGP+PE
Sbjct: 661 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 106/409 (25%), Positives = 153/409 (37%), Gaps = 86/409 (21%)
Query: 544 ILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWST--------------------- 582
LSN+ I G + S +L S+DLS N G + ++
Sbjct: 80 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 583 ---------NADELFLQDNRFSGP------LPENIGSLMPRLQRLYLSWNQLSGRIPSSV 627
+ + L L N SG L + G L+ L +S N++SG + S
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG----ELKHLAISGNKISGDVDVSR 195
Query: 628 C-NLE--------------------DLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNS 666
C NLE LQ L I NKLSG+F ++IS+N
Sbjct: 196 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 667 LTGSIPXXXXXXXXXXXXXXXXXXXXXXIPCSLQN-CTGLTSIDLGGNQLSGSLPLWISE 725
G IP IP L C LT +DL GN G++P +
Sbjct: 256 FVGPIP--PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 313
Query: 726 NLSSFFMLRLRSNLLSGDIP-QRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYG--- 781
+ +N SG++P L ++ L ++DLS N FSG +P + NLSA +
Sbjct: 314 CSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 372
Query: 782 ---------------NNSEVFQQLIWR--VVKGRNPEYSNIIADVNSIDLSWNNLTGQIP 824
N Q+L + G+ P + +++ S+ LS+N L+G IP
Sbjct: 373 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 432
Query: 825 DEIGNLSALHILNLSHNQLSGAIPQXXXXXXXXXXXXXXXXXXAGKIPS 873
+G+LS L L L N L G IPQ G+IPS
Sbjct: 433 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 142/345 (41%), Gaps = 40/345 (11%)
Query: 140 DFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLAL 199
++ IP G L LR L L + GEIP +L + +L+ L L F+ +G +
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL---DFNDLTGEIPS 481
Query: 200 HAQXXXXXXXXXXXXXXXXGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQG-IPLSLP 258
G + W + L +L L+L G IP L
Sbjct: 482 GLSNCTNLNWISLSNNRLTGEI------PKW---IGRLENLAILKLSNNSFSGNIPAELG 532
Query: 259 FINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTG----HIPNEFANLKLLE 314
+ S+ LDL+ N FN IP +F + + NF G +I N+ E
Sbjct: 533 --DCRSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKNDGMK---KE 583
Query: 315 VLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSN 374
N L+ G + L ++++ G FD ++ +LD+S N
Sbjct: 584 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD----NNGSMMFLDMSYN 639
Query: 375 SLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGK 434
L G +PK +G++ L L L N GSIP +G+L L LDLS N ++G IP++
Sbjct: 640 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 699
Query: 435 LSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFN 479
L+ L + +L N+ G + E + + E+F P KF+ N
Sbjct: 700 LTMLTEIDLSNNNLSGPIPE-----MGQFETF-----PPAKFLNN 734
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 107/255 (41%), Gaps = 45/255 (17%)
Query: 139 NDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSN----- 193
ND G EIP NL +++LS + +GEIP +G L +L L L +SFS N
Sbjct: 473 NDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Query: 194 ----------------SGSLALHAQXXXXXXXXXXXXXXXXGFVKLDHVGADWLQAVNML 237
+G++ ++K D + + A N+L
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 591
Query: 238 -----------------PSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIP 280
P + R++ G S F N S+ LD+S N + IP
Sbjct: 592 EFQGIRSEQLNRLSTRNPCNITSRVY-----GGHTSPTFDNNGSMMFLDMSYNMLSGYIP 646
Query: 281 PWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKS 340
+ S+ L L L N +G IP+E +L+ L +LDLS+N L G++P+ L L
Sbjct: 647 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-KLDGRIPQAMSALTMLTE 705
Query: 341 LDLSANNLNGEVHEF 355
+DLS NNL+G + E
Sbjct: 706 IDLSNNNLSGPIPEM 720
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 179 bits (455), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 211/715 (29%), Positives = 310/715 (43%), Gaps = 142/715 (19%)
Query: 263 TSISVLDLSENSFNSAIPPWLFSLTSLTKL-YLRWNFFTGHIPNEFAN-LKL--LEVLDL 318
S++ LDLS NS + + L SL S + L +L + T P + + LKL LEVLDL
Sbjct: 100 ASLTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158
Query: 319 SNNLDLGGQLPK--LFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSL 376
S N G + L LK L +S N ++G+V R NLE+LD+SSN+
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD------VSRCVNLEFLDVSSNNF 212
Query: 377 EGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLS 436
+P LG+ LQ+L +SGN G +I + L+ L++S N G IP L
Sbjct: 213 STGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLK 269
Query: 437 ELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIE 496
L +L +N + G + + L L+ N Y VPPF
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG--------NHFYGAVPPF-------- 313
Query: 497 NCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPR 556
+ L S+ L + S +P D K+ + L LS N+ G+LP
Sbjct: 314 -----------FGSCSLLESLALSSNNFSGELPMDTLLKMRG-LKVLDLSFNEFSGELPE 361
Query: 557 QMN--SPNLRSIDLSSNHFEG-TLPLWSTNAD----ELFLQDNRFSGPLPENIGSLMPRL 609
+ S +L ++DLSSN+F G LP N EL+LQ+N F+G +P + S L
Sbjct: 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSEL 420
Query: 610 QRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTG 669
L+LS+N LSG IPSS+ +L L+ L + N L GE P + + + + N LTG
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480
Query: 670 SIPXXXXXXXXXXXXXXXXXXXXXXIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSS 729
IP L NCT L I L N+L+G +P WI L +
Sbjct: 481 EIPS------------------------GLSNCTNLNWISLSNNRLTGEIPKWIGR-LEN 515
Query: 730 FFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIP-------------------- 769
+L+L +N SG+IP L + ++L +DL+ N F+G IP
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575
Query: 770 ----------RCIG------------------------NLSALVYG---------NNSEV 786
C G N+++ VYG N S +
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635
Query: 787 FQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGA 846
F + + ++ G P+ + + ++L N+++G IPDE+G+L L+IL+LS N+L G
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 847 IPQXXXXXXXXXXXXXXXXXXAGKIPSLPNFND--PSIYEGNPLLCGAPLPTKCP 899
IPQ +G IP + F P+ + NP LCG PLP P
Sbjct: 696 IPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 750
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 181/575 (31%), Positives = 252/575 (43%), Gaps = 111/575 (19%)
Query: 155 NLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQXXXXXXXXXXXX 214
NL +L++S ++FS IP LG S+LQ+LD+ + S
Sbjct: 201 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS----------------------- 236
Query: 215 XXXXGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENS 274
D+ +A++ L L + Q G +P + S+ L L+EN
Sbjct: 237 -------------GDFSRAISTCTELKLLNISSNQFVG---PIPPLPLKSLQYLSLAENK 280
Query: 275 FNSAIPPWLF-SLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLP-KLF 332
F IP +L + +LT L L N F G +P F + LLE L LS+N + G+LP
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NFSGELPMDTL 339
Query: 333 GILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGE-LPKSLGNLKN-L 390
+R LK LDLS N +GE+ E S +L LDLSSN+ G LP N KN L
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSA---SLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 391 QYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEG 450
Q L L N F G IP ++ N S L L LS+N ++GTIP S G LS+L D L N EG
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 451 ILQESQFMNLKRLESF-----RLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFP 505
+ + + M +K LE+ LT E + NW I + N ++ P
Sbjct: 457 EIPQ-ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW--------ISLSNNRLTGEIP 507
Query: 506 VWLQVQTELTSVILRNVGISDTIPGD--------WFS---------------KLSSEIT- 541
W+ L + L N S IP + W K S +I
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567
Query: 542 -------YLILSNNQIK-------------GKLPRQMNSPNLRS-IDLSSNHFEG-TLPL 579
Y+ + N+ +K G Q+N + R+ +++S + G T P
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627
Query: 580 WSTNADELFLQD--NRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILS 637
+ N +FL N SG +P+ IGS MP L L L N +SG IP V +L L IL
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686
Query: 638 IRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIP 672
+ SNKL G P M ID+SNN+L+G IP
Sbjct: 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 144/506 (28%), Positives = 223/506 (44%), Gaps = 62/506 (12%)
Query: 153 LKNLRYLNLSFSSFSGEIPPQL-GSLSSLQYLDLYADSFSSNSGSLALHAQXXXXXXXXX 211
LK+L+YL+L+ + F+GEIP L G+ +L LDL + F G++
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF---YGAVPPFFGSCSLLESLA 324
Query: 212 XXXXXXXGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQG-IPLSLPFINFTSISVLDL 270
G + +D + + L L L + + G +P SL ++ S+ LDL
Sbjct: 325 LSSNNFSGELPMD--------TLLKMRGLKVLDLSFNEFSGELPESLTNLS-ASLLTLDL 375
Query: 271 SENSFNSAIPPWLFS--LTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQL 328
S N+F+ I P L +L +LYL+ N FTG IP +N L L LS N L G +
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY-LSGTI 434
Query: 329 PKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLK 388
P G L +L+ L L N L GE+ + LE L L N L GE+P L N
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQEL----MYVKTLETLILDFNDLTGEIPSGLSNCT 490
Query: 389 NLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSW 448
NL ++ LS N G IP IG L +L L LS N +G IP G L+ +L N +
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550
Query: 449 EGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWL 508
G + + F ++ + F+ Y ++ +K + C + +
Sbjct: 551 NGTIPAAMFKQSGKIAA---------NFIAGKRYVYIKNDGMK----KECHGAGNLLEFQ 597
Query: 509 QVQTE-LTSVILRN-VGISDTIPGDWFSKL---SSEITYLILSNNQIKGKLPRQMNS-PN 562
+++E L + RN I+ + G S + + +L +S N + G +P+++ S P
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657
Query: 563 LRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGR 622
L ++L N G++P + +G L L L LS N+L GR
Sbjct: 658 LFILNLGHNDISGSIP---------------------DEVGDLR-GLNILDLSSNKLDGR 695
Query: 623 IPSSVCNLEDLQILSIRSNKLSGEFP 648
IP ++ L L + + +N LSG P
Sbjct: 696 IPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 128/479 (26%), Positives = 199/479 (41%), Gaps = 101/479 (21%)
Query: 139 NDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLS-SLQYLDLYADSFSSNSGSL 197
N+F G + +++ L+ L+LSF+ FSGE+P L +LS SL LDL +++FS
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG----- 382
Query: 198 ALHAQXXXXXXXXXXXXXXXXGFVKLDHVGADWLQAVNMLPSLVE-----LRLHYCQLQG 252
+LP+L + L+ Y Q G
Sbjct: 383 -------------------------------------PILPNLCQNPKNTLQELYLQNNG 405
Query: 253 IPLSLP--FINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANL 310
+P N + + L LS N + IP L SL+ L L L N G IP E +
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 311 KLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLD 370
K LE L L N DL G++P L + LS N L GE+ ++ GR NL L
Sbjct: 466 KTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI----GRLENLAILK 520
Query: 371 LSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPE 430
LS+NS G +P LG+ ++L +L L+ N F G+IP+++ S G I
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS-------------GKIAA 567
Query: 431 SF--GKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPF 488
+F GK + + ++ G +F ++ + RL+T P
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR--------------NPC 613
Query: 489 RLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSN- 547
+ S ++ P+F + + + +S + + K + YL + N
Sbjct: 614 NITS-RVYGGHTSPTFD---------NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663
Query: 548 --NQIKGKLPRQMNS-PNLRSIDLSSNHFEGTLPLWS---TNADELFLQDNRFSGPLPE 600
N I G +P ++ L +DLSSN +G +P T E+ L +N SGP+PE
Sbjct: 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 106/409 (25%), Positives = 153/409 (37%), Gaps = 86/409 (21%)
Query: 544 ILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWST--------------------- 582
LSN+ I G + S +L S+DLS N G + ++
Sbjct: 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 583 ---------NADELFLQDNRFSGP------LPENIGSLMPRLQRLYLSWNQLSGRIPSSV 627
+ + L L N SG L + G L+ L +S N++SG + S
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG----ELKHLAISGNKISGDVDVSR 198
Query: 628 C-NLE--------------------DLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNS 666
C NLE LQ L I NKLSG+F ++IS+N
Sbjct: 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 667 LTGSIPXXXXXXXXXXXXXXXXXXXXXXIPCSLQN-CTGLTSIDLGGNQLSGSLPLWISE 725
G IP IP L C LT +DL GN G++P +
Sbjct: 259 FVGPIP--PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 726 NLSSFFMLRLRSNLLSGDIP-QRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYG--- 781
+ +N SG++P L ++ L ++DLS N FSG +P + NLSA +
Sbjct: 317 CSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 782 ---------------NNSEVFQQLIWR--VVKGRNPEYSNIIADVNSIDLSWNNLTGQIP 824
N Q+L + G+ P + +++ S+ LS+N L+G IP
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435
Query: 825 DEIGNLSALHILNLSHNQLSGAIPQXXXXXXXXXXXXXXXXXXAGKIPS 873
+G+LS L L L N L G IPQ G+IPS
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 142/345 (41%), Gaps = 40/345 (11%)
Query: 140 DFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLAL 199
++ IP G L LR L L + GEIP +L + +L+ L L F+ +G +
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL---DFNDLTGEIPS 484
Query: 200 HAQXXXXXXXXXXXXXXXXGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQG-IPLSLP 258
G + W + L +L L+L G IP L
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEI------PKW---IGRLENLAILKLSNNSFSGNIPAELG 535
Query: 259 FINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTG----HIPNEFANLKLLE 314
+ S+ LDL+ N FN IP +F + + NF G +I N+ E
Sbjct: 536 --DCRSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKNDGMK---KE 586
Query: 315 VLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSN 374
N L+ G + L ++++ G FD ++ +LD+S N
Sbjct: 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD----NNGSMMFLDMSYN 642
Query: 375 SLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGK 434
L G +PK +G++ L L L N GSIP +G+L L LDLS N ++G IP++
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702
Query: 435 LSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFN 479
L+ L + +L N+ G + E + + E+F P KF+ N
Sbjct: 703 LTMLTEIDLSNNNLSGPIPE-----MGQFETF-----PPAKFLNN 737
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 107/255 (41%), Gaps = 45/255 (17%)
Query: 139 NDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSN----- 193
ND G EIP NL +++LS + +GEIP +G L +L L L +SFS N
Sbjct: 476 NDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Query: 194 ----------------SGSLALHAQXXXXXXXXXXXXXXXXGFVKLDHVGADWLQAVNML 237
+G++ ++K D + + A N+L
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594
Query: 238 -----------------PSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIP 280
P + R++ G S F N S+ LD+S N + IP
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVY-----GGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 281 PWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKS 340
+ S+ L L L N +G IP+E +L+ L +LDLS+N L G++P+ L L
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-KLDGRIPQAMSALTMLTE 708
Query: 341 LDLSANNLNGEVHEF 355
+DLS NNL+G + E
Sbjct: 709 IDLSNNNLSGPIPEM 723
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Query: 86 QSGHVTQLNLRNPYQLINGGVGDSTAYKGSCLGGKINPXXXXXXXXXXXXXXXNDFEGAE 145
+S + +L+ RNP + S Y GG +P N G
Sbjct: 600 RSEQLNRLSTRNPCNIT------SRVY-----GGHTSPTFDNNGSMMFLDMSYNMLSGY- 647
Query: 146 IPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSF 190
IP+ G + L LNL + SG IP ++G L L LDL ++
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 122/304 (40%), Gaps = 63/304 (20%)
Query: 597 PLPENIGSLMPRLQRLYLS-WNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQ 655
P+P ++ +L P L LY+ N L G IP ++ L L L I +SG P+ +
Sbjct: 67 PIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125
Query: 656 MFWGIDISNNSLTGSIPXXXXXXXXXXXXXXXXXXXXXXIPCSLQNCTGLTSIDLGGNQL 715
+D S N+L+G++P SL N G+T GN++
Sbjct: 126 TLVTLDFSYNALSGTLPPSIS---------------------SLPNLVGIT---FDGNRI 161
Query: 716 SGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIG-- 773
SG++P F + + N L+G IP NL NL +DLS N G G
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSD 220
Query: 774 -NLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSA 832
N + NS F + +V +N +N +DL N + G +P + L
Sbjct: 221 KNTQKIHLAKNSLAFD--LGKVGLSKN---------LNGLDLRNNRIYGTLPQGLTQLKF 269
Query: 833 LHILNLSHNQLSGAIPQXXXXXXXXXXXXXXXXXXAGKIPSLPNFNDPSIYEGNPLLCGA 892
LH LN+S N L G IPQ G + D S Y N LCG+
Sbjct: 270 LHSLNVSFNNLCGEIPQ------------------GGNLQRF----DVSAYANNKCLCGS 307
Query: 893 PLPT 896
PLP
Sbjct: 308 PLPA 311
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 28/228 (12%)
Query: 257 LPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVL 316
LP++NF I + N+ IPP + LT L LY+ +G IP+ + +K L L
Sbjct: 75 LPYLNFLYIGGI----NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130
Query: 317 DLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFS--------------GR 362
D S N L G LP L L + N ++G + + + FS G+
Sbjct: 131 DFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189
Query: 363 --PN----NLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRK 416
P NL ++DLS N LEG+ G+ KN Q + L+ NS + +G +L
Sbjct: 190 IPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNG 248
Query: 417 LDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLE 464
LDL N + GT+P+ +L L N+ N+ G + Q NL+R +
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG--EIPQGGNLQRFD 294
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 303 IPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGR 362
IP+ ANL L L + +L G +P L +L L ++ N++G + +F
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-- 125
Query: 363 PNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSL-RKLDLSY 421
L LD S N+L G LP S+ +L NL + GN G+IP S G+ S L + +S
Sbjct: 126 --TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 422 NGMNGTIPESFGKLSELVDANLLQNSWEG 450
N + G IP +F L+ L +L +N EG
Sbjct: 184 NRLTGKIPPTFANLN-LAFVDLSRNMLEG 211
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 123/310 (39%), Gaps = 85/310 (27%)
Query: 369 LDLSSNSLEGE--LPKSLGNLKNLQYLRLSG-NSFWGSIPSSIGNLSSLRKLDLSYNGMN 425
LDLS +L +P SL NL L +L + G N+ G IP +I L+ L L +++ ++
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 426 GTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWV 485
G IP+ ++ LV + N+ G L
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTL--------------------------------- 141
Query: 486 PPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLIL 545
PP SI S P L + IS IP D + S T + +
Sbjct: 142 PP----SIS--------SLP-------NLVGITFDGNRISGAIP-DSYGSFSKLFTSMTI 181
Query: 546 SNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSL 605
S N++ GK+P + NL +DLS N EG +A LF D
Sbjct: 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEG-------DASVLFGSDK------------- 221
Query: 606 MPRLQRLYLSWNQLS---GRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDI 662
Q+++L+ N L+ G++ S ++L L +R+N++ G P + +++
Sbjct: 222 --NTQKIHLAKNSLAFDLGKVGLS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275
Query: 663 SNNSLTGSIP 672
S N+L G IP
Sbjct: 276 SFNNLCGEIP 285
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 132/335 (39%), Gaps = 74/335 (22%)
Query: 44 LCLDAEREGLLAFKESLTDPSGRLSSWV-GQDCC--KWNGVYCNNQSG-------HVTQL 93
LC +++ LL K+ L +P+ LSSW+ DCC W GV C+ + ++ L
Sbjct: 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60
Query: 94 NLRNPYQ-------------LINGGVGDSTAYKGSCLGGKINPXXXXXXXXXXXXXXXND 140
NL PY L GG+ + L G I P +
Sbjct: 61 NLPKPYPIPSSLANLPYLNFLYIGGINN--------LVGPIPPAIAKLTQLHYLYITHTN 112
Query: 141 FEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALH 200
GA IP++ Q+K L L+ S+++ SG +PP + SL +L +F N S A+
Sbjct: 113 VSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP-----NLVGITFDGNRISGAIP 166
Query: 201 AQXXXXXXXXXXXXXXXXGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQG-IPLSLPF 259
F KL + + +L G IP +
Sbjct: 167 DS--------------YGSFSKL----------------FTSMTISRNRLTGKIPPTFAN 196
Query: 260 INFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLS 319
+N ++ +DLS N S + K++L N + + K L LDL
Sbjct: 197 LN---LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLR 252
Query: 320 NNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHE 354
NN + G LP+ L+ L SL++S NNL GE+ +
Sbjct: 253 NN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 365 NLEYLDL----SSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLS 420
NL YL+ N+L G +P ++ L L YL ++ + G+IP + + +L LD S
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 421 YNGMNGTIPESFGKLSELVDANLLQNSWEGILQES 455
YN ++GT+P S L LV N G + +S
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 12/127 (9%)
Query: 320 NNLDLGG-QLPKLFGILRRLKSLDL-------SANNLNGEVHEFFDGFSGRPNNLEYLDL 371
NNLDL G LPK + I L +L NNL G + + L YL +
Sbjct: 53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT----QLHYLYI 108
Query: 372 SSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPES 431
+ ++ G +P L +K L L S N+ G++P SI +L +L + N ++G IP+S
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168
Query: 432 FGKLSEL 438
+G S+L
Sbjct: 169 YGSFSKL 175
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 91/223 (40%), Gaps = 9/223 (4%)
Query: 250 LQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFAN 309
LQ +P+ +P + + L N + + +LT L+L N F
Sbjct: 23 LQAVPVGIP----AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78
Query: 310 LKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYL 369
L LLE LDLS+N L P F L RL +L L L F G + L+YL
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA----LQYL 134
Query: 370 DLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIP 429
L N+L+ + +L NL +L L GN + L SL +L L N + P
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194
Query: 430 ESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEP 472
+F L L+ L N+ + E+ L+ L+ RL P
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEA-LAPLRALQYLRLNDNP 236
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 91/223 (40%), Gaps = 9/223 (4%)
Query: 250 LQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFAN 309
LQ +P+ +P + + L N + + +LT L+L N F
Sbjct: 22 LQAVPVGIP----AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 77
Query: 310 LKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYL 369
L LLE LDLS+N L P F L RL +L L L F G + L+YL
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA----LQYL 133
Query: 370 DLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIP 429
L N+L+ + +L NL +L L GN + L SL +L L N + P
Sbjct: 134 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 193
Query: 430 ESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEP 472
+F L L+ L N+ + E+ L+ L+ RL P
Sbjct: 194 HAFRDLGRLMTLYLFANNLSALPTEA-LAPLRALQYLRLNDNP 235
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 93/224 (41%), Gaps = 11/224 (4%)
Query: 250 LQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLF-SLTSLTKLYLRWNFFTGHIPNEFA 308
LQ +P +P S + L N S +P F S +LT L+L N G F
Sbjct: 22 LQAVPTGIP----ASSQRIFLHGNRI-SYVPAASFQSCRNLTILWLHSNALAGIDAAAFT 76
Query: 309 NLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEY 368
L LLE LDLS+N L P F L L +L L L F G + L+Y
Sbjct: 77 GLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAA----LQY 132
Query: 369 LDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTI 428
L L N+L+ + +L NL +L L GN + L SL +L L N +
Sbjct: 133 LYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVH 192
Query: 429 PESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEP 472
P +F L L+ L N+ +L + L+ L+ RL P
Sbjct: 193 PHAFRDLGRLMTLYLFANNLS-MLPAEVLVPLRSLQYLRLNDNP 235
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 115/479 (24%), Positives = 183/479 (38%), Gaps = 80/479 (16%)
Query: 251 QGIPLSL---PFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNE- 306
Q PL++ F N ++ +LDL + P L L +L L + + + +
Sbjct: 58 QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG 117
Query: 307 -FANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNN 365
F NLK L LDLS N L FG L LKS+D S+N + + G+
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK--T 175
Query: 366 LEYLDLSSNSLEGELPKSLGNLKN------LQYLRLSGNSFWGSIPSSIGNL-------- 411
L + L++NSL + G N L+ L +SGN + I + N
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235
Query: 412 ------------------------------SSLRKLDLSYNGMNGTIPESFGKLSELVDA 441
SS+R LDLS+ + F L +L
Sbjct: 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVL 295
Query: 442 NLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQV- 500
NL N I E+ F L L+ L+ + +++ ++ +P +Q + +
Sbjct: 296 NLAYNKINKIADEA-FYGLDNLQVLNLSYNLLGE-LYSSNFYGLPKVAYIDLQKNHIAII 353
Query: 501 -GPSFPVWLQVQT-ELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM 558
+F ++QT +L L + +IP + LS N++ LP+
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD------------IFLSGNKLV-TLPKIN 400
Query: 559 NSPNLRSIDLSSNHFEGTLPLW----STNADELFLQDNRFSGPLPENIGSLMPRLQRLYL 614
+ NL I LS N E L+ + L L NRFS + S P L++L+L
Sbjct: 401 LTANL--IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458
Query: 615 SWNQLSGRIPSSVC-----NLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLT 668
N L + +C L LQ+L + N L+ P + H G+ +++N LT
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 94/479 (19%), Positives = 177/479 (36%), Gaps = 60/479 (12%)
Query: 382 KSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPES--FGKLSELV 439
++ NL NL+ L L + + P + L L +L L + G++ + + F L L
Sbjct: 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126
Query: 440 DANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQ 499
+L +N + F L L+S ++ +F V + + P + K++ +
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ----IFLVCEHELEPLQGKTLSFFSLA 182
Query: 500 VGPSFPV----WLQVQTELTSVILRNVGISDT-----IPGDWFSKLSSEITYLILSNNQI 550
+ W + +++L + +S I G++ + +S + ++ + I
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242
Query: 551 KGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQ 610
G N++ D N F G L ++ L L F L + + L+
Sbjct: 243 MGA---GFGFHNIKDPD--QNTFAG---LARSSVRHLDLSHG-FVFSLNSRVFETLKDLK 293
Query: 611 RLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGS 670
L L++N+++ + L++LQ+L++ N L + + +Y ID+ N +
Sbjct: 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-- 351
Query: 671 IPXXXXXXXXXXXXXXXXXXXXXXIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSF 730
++ + I L GN+L + ++ NL
Sbjct: 352 ---IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANL--- 405
Query: 731 FMLRLRSNLLSG-DIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQ 789
+ L N L DI L + +L I+ L+ N FS C G+ +
Sbjct: 406 --IHLSENRLENLDILYFLLRVPHLQILILNQNRFSS----CSGDQTP------------ 447
Query: 790 LIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIP 848
NP + N + L+W T D LS L +L L+HN L+ P
Sbjct: 448 -------SENPSLEQLFLGENMLQLAWE--TELCWDVFEGLSHLQVLYLNHNYLNSLPP 497
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 88/194 (45%), Gaps = 10/194 (5%)
Query: 260 INFTSISVLDLSEN--SFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLD 317
++ S+ LDLS N SF F TSL L L +N N F L+ LE LD
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLD 402
Query: 318 LSN-NLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSL 376
+ NL + +F LR L LD+S + + F+G S LE L ++ NS
Sbjct: 403 FQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS----LEVLKMAGNSF 457
Query: 377 -EGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKL 435
E LP L+NL +L LS P++ +LSSL+ L+++ N + F +L
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517
Query: 436 SELVDANLLQNSWE 449
+ L L N W+
Sbjct: 518 TSLQKIWLHTNPWD 531
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 139 NDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSS 192
N F+ +P+ F +L+NL +L+LS P SLSSLQ L++ ++ S
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 18/136 (13%)
Query: 220 FVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAI 279
F L H+G+ + P L L L C++Q I + + + +S L L+ N S
Sbjct: 37 FNPLRHLGS---YSFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLA 92
Query: 280 PPWLFSLTSLTKLYLRW-------NFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLF 332
L+SL KL NF GH LK L+ L++++NL +LP+ F
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGH-------LKTLKELNVAHNLIQSFKLPEYF 145
Query: 333 GILRRLKSLDLSANNL 348
L L+ LDLS+N +
Sbjct: 146 SNLTNLEHLDLSSNKI 161
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 256 SLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLE- 314
S F +F + VLDLS + SL+ L+ L L N F+ L L+
Sbjct: 45 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104
Query: 315 VLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNG-EVHEFFDGFSGRPNNLEYLDLSS 373
++ + NL P G L+ LK L+++ N + ++ E+F + NLE+LDLSS
Sbjct: 105 LVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLT----NLEHLDLSS 158
Query: 374 NSLE 377
N ++
Sbjct: 159 NKIQ 162
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 751 LQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVN 810
L+NL +D+SH + A LS+L EV + + P+ + ++
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSL------EVLKMAGNSFQENFLPDIFTELRNLT 473
Query: 811 SIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGA 846
+DLS L P +LS+L +LN++ NQL
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 99/245 (40%), Gaps = 28/245 (11%)
Query: 239 SLVELRLHYCQLQGIPLSLPFINFTSISVLDLSEN--SFNSAIPPWLFSLTSLTKLYLRW 296
S L L +LQ +P + F T ++ L LS N SF F TSL L L +
Sbjct: 29 SATRLELESNKLQSLPHGV-FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 297 NFFTGHIPNEFANLKLLEVLDLSN-NLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEF 355
N N F L+ LE LD + NL + +F LR L LD+S + +
Sbjct: 88 NGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGI 145
Query: 356 FDGFSG---------------------RPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLR 394
F+G S NL +LDLS LE P + +L +LQ L
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 395 LSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKL-SELVDANLLQNSWEGILQ 453
+S N+F+ L+SL+ LD S N + + + S L NL QN + +
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265
Query: 454 ESQFM 458
F+
Sbjct: 266 HQSFL 270
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 139 NDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSS 192
N F+ +P+ F +L+NL +L+LS P SLSSLQ L++ ++F S
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 750 NLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADV 809
+L+NL +D+SH + A LS+L EV + + P+ + ++
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSL------EVLKMAGNSFQENFLPDIFTELRNL 177
Query: 810 NSIDLSWNNLTGQIPDEIGNLSALHILNLSHN 841
+DLS L P +LS+L +LN+SHN
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 89/223 (39%), Gaps = 15/223 (6%)
Query: 249 QLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFA 308
+L IP ++P LDL N +S LT L LYL N F
Sbjct: 27 KLTAIPSNIP----ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK 82
Query: 309 NLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEY 368
LK LE L +++N L +F L L L L N L FD + L Y
Sbjct: 83 ELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT----KLTY 137
Query: 369 LDLSSNSLEGELPKSL-GNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGT 427
L L N L+ LPK + L +L+ LRL N + L+ L+ L L N +
Sbjct: 138 LSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196
Query: 428 IPESFGKLSELVDANLLQNSWE----GILQESQFMNLKRLESF 466
+F L +L L +N W+ GI+ ++++ K E
Sbjct: 197 PEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGL 239
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 64/161 (39%), Gaps = 6/161 (3%)
Query: 316 LDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNS 375
LDL +N L K F L +L+ L L+ N L G NLE L ++ N
Sbjct: 42 LDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKL----QTLPAGIFKELKNLETLWVTDNK 96
Query: 376 LEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKL 435
L+ L NL LRL N P +L+ L L L YN + F KL
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156
Query: 436 SELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKF 476
+ L + L N + + E F L L++ +L K+
Sbjct: 157 TSLKELRLYNNQLKRV-PEGAFDKLTELKTLKLDNNQLKRV 196
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 76/204 (37%), Gaps = 26/204 (12%)
Query: 562 NLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSG 621
N S+D SS + +L LQ N+ S LP + +L+ LYL+ N+L
Sbjct: 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQT 75
Query: 622 RIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPXXXXXXXXX 681
L++L+ L + NKL + + + N L S+P
Sbjct: 76 LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLP--------- 125
Query: 682 XXXXXXXXXXXXXIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLS 741
P + T LT + LG N+L SLP + + L+S LRL +N L
Sbjct: 126 --------------PRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK 170
Query: 742 GDIPQRLCNLQNLHIIDLSHNNFS 765
L L + L +N
Sbjct: 171 RVPEGAFDKLTELKTLKLDNNQLK 194
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 91/224 (40%), Gaps = 27/224 (12%)
Query: 260 INFTSISVLDLSEN--SFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLD 317
++ S+ LDLS N SF F TSL L L +N N F L+ LE LD
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLD 402
Query: 318 LSN-NLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSG--------------- 361
+ NL + +F LR L LD+S + + F+G S
Sbjct: 403 FQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 362 ------RPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLR 415
NL +LDLS LE P + +L +LQ L +S N+F+ L+SL+
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 416 KLDLSYNGMNGTIPESFGKL-SELVDANLLQNSWEGILQESQFM 458
LD S N + + + S L NL QN + + F+
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 565
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 139 NDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSS 192
N F+ +P+ F +L+NL +L+LS P SLSSLQ L++ ++F S
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 15/119 (12%)
Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRW 296
P L L L C++Q I + + + +S L L+ N S L+SL KL
Sbjct: 51 FPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 297 -------NFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNL 348
NF GH LK L+ L++++NL +LP+ F L L+ LDLS+N +
Sbjct: 110 TNLASLENFPIGH-------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 256 SLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLE- 314
S F +F + VLDLS + SL+ L+ L L N F+ L L+
Sbjct: 45 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104
Query: 315 VLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNG-EVHEFFDGFSGRPNNLEYLDLSS 373
++ + NL P G L+ LK L+++ N + ++ E+F + NLE+LDLSS
Sbjct: 105 LVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLT----NLEHLDLSS 158
Query: 374 NSLEG 378
N ++
Sbjct: 159 NKIQS 163
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 751 LQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVN 810
L+NL +D+SH + A LS+L EV + + P+ + ++
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSL------EVLKMAGNSFQENFLPDIFTELRNLT 473
Query: 811 SIDLSWNNLTGQIPDEIGNLSALHILNLSHN 841
+DLS L P +LS+L +LN+SHN
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 99/232 (42%), Gaps = 12/232 (5%)
Query: 243 LRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGH 302
L LH Q+Q I ++ F + + +L LS N + L +L L L N T
Sbjct: 69 LNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT- 126
Query: 303 IPN-EFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHE-FFDGFS 360
IPN F L L+ L L NN + F + L+ LDL + E F+G S
Sbjct: 127 IPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185
Query: 361 GRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLS 420
NL YL+L+ +L E+P +L L L L LSGN P S L L+KL +
Sbjct: 186 ----NLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239
Query: 421 YNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEP 472
+ + +F L LV+ NL N+ +L F L LE L P
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNP 290
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 96/231 (41%), Gaps = 48/231 (20%)
Query: 258 PFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLD 317
PF N TSI+ LDLS N F ++ F + TK+ + L
Sbjct: 208 PFKN-TSITTLDLSGNGFKESMAKRFFDAIAGTKI---------------------QSLI 245
Query: 318 LSNNLDLGGQL-------PKLFGI----LRRLKSLDLSANNLNGEVHEFFDGFSGRPNNL 366
LSN+ ++G P F +K+ DLS + + + F F+ +L
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT----DL 301
Query: 367 EYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRKLDLSYNGMN 425
E L L+ N + + L +L L LS N F GSI S + NL L LDLSYN +
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIR 360
Query: 426 GTIPESFGKLSEL----VDANLLQNSWEGILQESQFMNLKRLESFRLTTEP 472
+SF L L +D N L++ +GI F L L+ L T P
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGI-----FDRLTSLQKIWLHTNP 406
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 259 FINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDL 318
F +FT + L L++N N + LT L KL L NF F NL LEVLDL
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354
Query: 319 SNN--LDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSL 376
S N LG Q F L LK L L N L FD R +L+ + L +N
Sbjct: 355 SYNHIRALGDQ---SFLGLPNLKELALDTNQLKSVPDGIFD----RLTSLQKIWLHTNPW 407
Query: 377 EGELPK 382
+ P+
Sbjct: 408 DCSCPR 413
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 75/339 (22%), Positives = 135/339 (39%), Gaps = 62/339 (18%)
Query: 363 PNNLEYLDLSSNSLEGELPKSLGNLKNLQY-------------------------LRLSG 397
P ++ Y+DLS NS+ S L++LQ+ L+L
Sbjct: 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88
Query: 398 NSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPES--FGKLSELVDANLLQNSWEGILQES 455
N F + L++L L L+ ++G + F L+ L L N+ + I S
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 456 QFMNLKRLESFRLTTEPTKKF----VFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQ 511
F+N++R LT K + N RL SI +++ WL +
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN-----EYWLGWE 203
Query: 512 --------TELTSVILRNVGISDTIPGDWFSKLS-SEITYLILSNNQIKG--------KL 554
T +T++ L G +++ +F ++ ++I LILSN+ G K
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263
Query: 555 P-----RQMNSPNLRSIDLSSNHFEGTLP-LWS--TNADELFLQDNRFSGPLPENIGSLM 606
P + + + +++ DLS + L ++S T+ ++L L N + + +N +
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGL 322
Query: 607 PRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSG 645
L +L LS N L NL+ L++L + N +
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 90/224 (40%), Gaps = 27/224 (12%)
Query: 260 INFTSISVLDLSEN--SFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLD 317
++ S+ LDLS N SF F SL L L +N N F L+ LE LD
Sbjct: 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN-FLGLEQLEHLD 426
Query: 318 LSN-NLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSG--------------- 361
+ NL + +F LR L LD+S + + F+G S
Sbjct: 427 FQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 485
Query: 362 ------RPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLR 415
NL +LDLS LE P + +L +LQ L +S N+F+ L+SL+
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545
Query: 416 KLDLSYNGMNGTIPESFGKL-SELVDANLLQNSWEGILQESQFM 458
LD S N + + + S L NL QN + + F+
Sbjct: 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 589
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 139 NDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSS 192
N F+ +P+ F +L+NL +L+LS P SLSSLQ L++ ++F S
Sbjct: 479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 532
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 15/119 (12%)
Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRW 296
P L L L C++Q I + + + +S L L+ N S L+SL KL
Sbjct: 75 FPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133
Query: 297 -------NFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNL 348
NF GH LK L+ L++++NL +LP+ F L L+ LDLS+N +
Sbjct: 134 TNLASLENFPIGH-------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 256 SLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLE- 314
S F +F + VLDLS + SL+ L+ L L N F+ L L+
Sbjct: 69 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128
Query: 315 VLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNG-EVHEFFDGFSGRPNNLEYLDLSS 373
++ + NL P G L+ LK L+++ N + ++ E+F + NLE+LDLSS
Sbjct: 129 LVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLT----NLEHLDLSS 182
Query: 374 NSLEG 378
N ++
Sbjct: 183 NKIQS 187
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 751 LQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVN 810
L+NL +D+SH + A LS+L EV + + P+ + ++
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSL------EVLKMAGNSFQENFLPDIFTELRNLT 497
Query: 811 SIDLSWNNLTGQIPDEIGNLSALHILNLSHN 841
+DLS L P +LS+L +LN+SHN
Sbjct: 498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 11/135 (8%)
Query: 322 LDLGGQLPKLFGILRRLKSLD---LSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEG 378
L LGG L+ L +L L+ N L + FD + NL+ L L N L+
Sbjct: 68 LALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLT----NLKELVLVENQLQS 123
Query: 379 ELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRKLDLSYNGMNGTIPES-FGKLS 436
L NL YL L+ N S+P + L++L +LDLSYN + ++PE F KL+
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLT 181
Query: 437 ELVDANLLQNSWEGI 451
+L D L QN + +
Sbjct: 182 QLKDLRLYQNQLKSV 196
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 28/132 (21%)
Query: 527 TIPGDWFSKLSSEITYLILSNNQIKGKLPRQM--NSPNLRSIDLSSNHFEGTLPLWSTNA 584
++P F KL++ +TYL L++NQ++ LP+ + NL +DLS N +
Sbjct: 123 SLPDGVFDKLTN-LTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQS--------- 171
Query: 585 DELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCN-LEDLQILSIRSNKL 643
LPE + + +L+ L L NQL +P V + L LQ + + N
Sbjct: 172 -------------LPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPW 217
Query: 644 SGEFPNCWYHSQ 655
P Y S+
Sbjct: 218 DCTCPGIRYLSE 229
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%)
Query: 360 SGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDL 419
SG ++ LDLS+N + L NLQ L L+ N S +L SL LDL
Sbjct: 22 SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 81
Query: 420 SYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRL 468
SYN ++ F LS L NLL N ++ + + S F +L +L+ R+
Sbjct: 82 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 130
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 108/456 (23%), Positives = 181/456 (39%), Gaps = 107/456 (23%)
Query: 259 FINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWN-FFTGHIPNEFANLKLLEVLD 317
F + S+ LDLS N ++ W L+SLT L L N + T + F++L L++L
Sbjct: 70 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 129
Query: 318 LSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLE 377
+ G + I R+ F+G LE L++ ++ L+
Sbjct: 130 V-------GNMDTFTKIQRK--------------------DFAGL-TFLEELEIDASDLQ 161
Query: 378 GELPKSLGNLKNLQYLRLSGN------SFWGSIPSSIGNLSSLRKLD--------LSYNG 423
PKSL +++N+ +L L + + SS+ L LR D LS
Sbjct: 162 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL-ELRDTDLDTFHFSELSTGE 220
Query: 424 MNGTIPESFGKLSELVDANLLQ-----NSWEGILQ-ESQFMNLKRLESFRLT-----TEP 472
N I + + ++ D +L Q N G+L+ E L + +FR + +P
Sbjct: 221 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFDDCTLNGVGNFRASDNDRVIDP 280
Query: 473 TKKFVFNVSYNWVPPF--------------RLKSIQIENCQVGPSFPVWLQVQTELTSVI 518
K + +P F R+K I +EN +V F V + L S
Sbjct: 281 GKVETLTIRRLHIPRFYLFYDLSTLYSLTERVKRITVENSKV---FLVPCLLSQHLKS-- 335
Query: 519 LRNVGISDTIPGDWFSKLSS------EITYLILSNNQIKGKLPRQ----MNSPNLRSIDL 568
L + +S+ + + + K S+ + LIL N + L + + NL +ID+
Sbjct: 336 LEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHL-ASLEKTGETLLTLKNLTNIDI 394
Query: 569 SSNHFEGTLP---LWSTNADELFLQDNRF---SGPLPENIGSL-------------MPRL 609
S N F ++P W L L R +G +P+ + L +P+L
Sbjct: 395 SKNSFH-SMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLNLFSLNLPQL 453
Query: 610 QRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSG 645
+ LY+S N+L +S+ L L +L I N+L
Sbjct: 454 KELYISRNKLMTLPDASL--LPMLLVLKISRNQLKS 487
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%)
Query: 360 SGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDL 419
SG ++ LDLS+N + L NLQ L L+ N S +L SL LDL
Sbjct: 48 SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107
Query: 420 SYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRL 468
SYN ++ F LS L NLL N ++ + + S F +L +L+ R+
Sbjct: 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 66/154 (42%), Gaps = 10/154 (6%)
Query: 295 RWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHE 354
+ N HIP A L+L +NN + +F L +L+ ++ S N +
Sbjct: 22 KLNKIPEHIPQYTAELRL------NNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG 75
Query: 355 FFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSL 414
F+G SG + + L+SN LE K L++L+ L L N S LSS+
Sbjct: 76 AFEGASG----VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV 131
Query: 415 RKLDLSYNGMNGTIPESFGKLSELVDANLLQNSW 448
R L L N + P +F L L NLL N +
Sbjct: 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 142/351 (40%), Gaps = 65/351 (18%)
Query: 514 LTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHF 573
LT + N ++D P +KL ++++NNQI P N NL + L +N
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVD----ILMNNNQIADITPL-ANLTNLTGLTLFNNQI 119
Query: 574 EGTLPLWS-TNADELFLQDNRFSGPLPENIGSL--MPRLQRLYLSWNQLSGRIPSSVCNL 630
PL + TN + L L N S +I +L + LQ+L S NQ++ P + NL
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTIS-----DISALSGLTSLQQLNFSSNQVTDLKP--LANL 172
Query: 631 EDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPXXXXXXXXXXXXXXXXXX 690
L+ L I SNK+S + + +NN ++ P
Sbjct: 173 TTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK 230
Query: 691 XXXXIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCN 750
+L + T LT +DL NQ+S PL L+ L+L +N +S P L
Sbjct: 231 DI----GTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISP--LAG 281
Query: 751 LQNLHIIDLSHNNFSGAIPRCIGNLSALVY-----GNNSEV--------FQQLIWRVVKG 797
L L ++L+ N P I NL L Y N S++ Q+L +
Sbjct: 282 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF----- 334
Query: 798 RNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIP 848
Y+N ++DV+S + NL+ ++ L+ HNQ+S P
Sbjct: 335 ----YNNKVSDVSS---------------LANLTNINWLSAGHNQISDLTP 366
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 104/236 (44%), Gaps = 33/236 (13%)
Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRW 296
L +L L L Q+ I P N T+++ L+LS N+ + L LTSL +L
Sbjct: 106 LTNLTGLTLFNNQITDID---PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSS 160
Query: 297 NFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL--FGILRRLKSLD--LSANNLNGEV 352
N T P ANL LE LD+S+N K+ +L +L +L+ ++ NN ++
Sbjct: 161 NQVTDLKP--LANLTTLERLDISSN--------KVSDISVLAKLTNLESLIATNNQISDI 210
Query: 353 HEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLS 412
G NL+ L L+ N L+ +L +L NL L L+ N P + L+
Sbjct: 211 TPL-----GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLT 261
Query: 413 SLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRL 468
L +L L N ++ P L+ L + L +N E I S NLK L L
Sbjct: 262 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI---SPISNLKNLTYLTL 312
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 142/351 (40%), Gaps = 65/351 (18%)
Query: 514 LTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHF 573
LT + N ++D P +KL ++++NNQI P N NL + L +N
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVD----ILMNNNQIADITPL-ANLTNLTGLTLFNNQI 119
Query: 574 EGTLPLWS-TNADELFLQDNRFSGPLPENIGSL--MPRLQRLYLSWNQLSGRIPSSVCNL 630
PL + TN + L L N S +I +L + LQ+L S NQ++ P + NL
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTIS-----DISALSGLTSLQQLSFSSNQVTDLKP--LANL 172
Query: 631 EDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPXXXXXXXXXXXXXXXXXX 690
L+ L I SNK+S + + +NN ++ P
Sbjct: 173 TTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK 230
Query: 691 XXXXIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCN 750
+L + T LT +DL NQ+S PL L+ L+L +N +S P L
Sbjct: 231 DI----GTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISP--LAG 281
Query: 751 LQNLHIIDLSHNNFSGAIPRCIGNLSALVY-----GNNSEV--------FQQLIWRVVKG 797
L L ++L+ N P I NL L Y N S++ Q+L +
Sbjct: 282 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF----- 334
Query: 798 RNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIP 848
Y+N ++DV+S + NL+ ++ L+ HNQ+S P
Sbjct: 335 ----YNNKVSDVSS---------------LANLTNINWLSAGHNQISDLTP 366
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 104/236 (44%), Gaps = 33/236 (13%)
Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRW 296
L +L L L Q+ I P N T+++ L+LS N+ + L LTSL +L
Sbjct: 106 LTNLTGLTLFNNQITDID---PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSS 160
Query: 297 NFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL--FGILRRLKSLD--LSANNLNGEV 352
N T P ANL LE LD+S+N K+ +L +L +L+ ++ NN ++
Sbjct: 161 NQVTDLKP--LANLTTLERLDISSN--------KVSDISVLAKLTNLESLIATNNQISDI 210
Query: 353 HEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLS 412
G NL+ L L+ N L+ +L +L NL L L+ N P + L+
Sbjct: 211 TPL-----GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLT 261
Query: 413 SLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRL 468
L +L L N ++ P L+ L + L +N E I S NLK L L
Sbjct: 262 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI---SPISNLKNLTYLTL 312
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 9/194 (4%)
Query: 305 NEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPN 364
+EFA+ LE L+L+ N+ + P F L L++L L +N L F G S
Sbjct: 50 DEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS---- 104
Query: 365 NLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGM 424
NL LD+S N + L +L NL+ L + N + L+SL +L L +
Sbjct: 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164
Query: 425 NGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNW 484
E+ L L+ L + I ++ F L RL+ ++ P ++ ++ N
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVLEISHWP---YLDTMTPNC 220
Query: 485 VPPFRLKSIQIENC 498
+ L S+ I +C
Sbjct: 221 LYGLNLTSLSITHC 234
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 80/193 (41%), Gaps = 21/193 (10%)
Query: 248 CQLQG---IPLSLPFINFTSISVLDLSENSFNSAIPPWLF-SLTSLTKLYLRWNFFTGHI 303
C QG +P +P + LDL NS S +P +F LTSLT+LYL N
Sbjct: 14 CYSQGRTSVPTGIP----AQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLP 68
Query: 304 PNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRP 363
F L L L+LS N L +F L +LK L L+ N L FD +
Sbjct: 69 NGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT--- 124
Query: 364 NNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNG 423
L+ L L N L+ L +LQY+ L N + + P +R L N
Sbjct: 125 -QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINK 176
Query: 424 MNGTIPESFGKLS 436
+G + S G ++
Sbjct: 177 HSGVVRNSAGSVA 189
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 360 SGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGN-LSSLRKLD 418
+G P YLDL +NSL+ L +L L L GN S+P+ + N L+SL L+
Sbjct: 24 TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLN 82
Query: 419 LSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRL 468
LS N + F KL++L + L N + L + F L +L+ RL
Sbjct: 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRL 131
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 10/134 (7%)
Query: 331 LFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNL 390
+F L L L L N L + F+ + +L YL+LS+N L+ L L
Sbjct: 47 VFDELTSLTQLYLGGNKLQSLPNGVFNKLT----SLTYLNLSTNQLQSLPNGVFDKLTQL 102
Query: 391 QYLRLSGNSFWGSIPSSI-GNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWE 449
+ L L+ N S+P + L+ L+ L L N + F +L+ L L N W+
Sbjct: 103 KELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161
Query: 450 ----GILQESQFMN 459
GI S+++N
Sbjct: 162 CTCPGIRYLSEWIN 175
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 104/236 (44%), Gaps = 33/236 (13%)
Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRW 296
L +L L L Q+ I P N T+++ L+LS N+ + L LTSL +L
Sbjct: 106 LTNLTGLTLFNNQITDID---PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSS 160
Query: 297 NFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL--FGILRRLKSLD--LSANNLNGEV 352
N T P ANL LE LD+S+N K+ +L +L +L+ ++ NN ++
Sbjct: 161 NQVTDLKP--LANLTTLERLDISSN--------KVSDISVLAKLTNLESLIATNNQISDI 210
Query: 353 HEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLS 412
G NL+ L L+ N L+ +L +L NL L L+ N P + L+
Sbjct: 211 TPL-----GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLT 261
Query: 413 SLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRL 468
L +L L N ++ P L+ L + L +N E I S NLK L L
Sbjct: 262 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI---SPISNLKNLTYLTL 312
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 111/270 (41%), Gaps = 28/270 (10%)
Query: 514 LTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHF 573
LT + N ++D P +KL ++++NNQI P N NL + L +N
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVD----ILMNNNQIADITPL-ANLTNLTGLTLFNNQI 119
Query: 574 EGTLPLWS-TNADELFLQDNRFSGPLPENIGSL--MPRLQRLYLSWNQLSGRIPSSVCNL 630
PL + TN + L L N S +I +L + LQ+L S NQ++ P + NL
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTIS-----DISALSGLTSLQQLSFSSNQVTDLKP--LANL 172
Query: 631 EDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPXXXXXXXXXXXXXXXXXX 690
L+ L I SNK+S + + +NN ++ P
Sbjct: 173 TTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK 230
Query: 691 XXXXIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCN 750
+L + T LT +DL NQ+S PL L+ L+L +N +S P L
Sbjct: 231 DI----GTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISP--LAG 281
Query: 751 LQNLHIIDLSHNNFSGAIPRCIGNLSALVY 780
L L ++L+ N P I NL L Y
Sbjct: 282 LTALTNLELNENQLEDISP--ISNLKNLTY 309
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 103/249 (41%), Gaps = 33/249 (13%)
Query: 363 PNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYN 422
P N YL+L NS++ + +L++L+ L+LS N + L SL L+L N
Sbjct: 34 PVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDN 93
Query: 423 GMNGTIPESFGKLSELVDANLLQNSWEGI----------LQESQFMNLKRLESFRLTTEP 472
+ ++F LS+L + L N E I L+ LKRLE +E
Sbjct: 94 RLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYI---SEA 150
Query: 473 TKKFVFNVSY------------NWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILR 520
+ + N+ Y N RL+ +++ ++ P Q T L + L
Sbjct: 151 AFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLM 210
Query: 521 NVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLW 580
+ ++ TI + F L S + L LS+N + LP + +P R + NH W
Sbjct: 211 HAQVA-TIERNAFDDLKS-LEELNLSHNNLMS-LPHDLFTPLHRLERVHLNHNP-----W 262
Query: 581 STNADELFL 589
N D L+L
Sbjct: 263 HCNCDVLWL 271
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 233 AVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKL 292
A L +L L L C L+ IP + L+LS N + P LTSL KL
Sbjct: 151 AFEGLVNLRYLNLGMCNLKDIP---NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKL 207
Query: 293 YLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSAN 346
+L N F +LK LE L+LS+N +L LF L RL+ + L+ N
Sbjct: 208 WLMHAQVATIERNAFDDLKSLEELNLSHN-NLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 561 PNLRSIDLSSNHFEGTLPLWSTN--ADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQ 618
PNLR +DLSSNH ++ A E+ L N + N M +LQ+LYLS NQ
Sbjct: 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147
Query: 619 LSGRIPSSVC----NLEDLQILSIRSNKL 643
+S R P + L L +L + SNKL
Sbjct: 148 IS-RFPVELIKDGNKLPKLMLLDLSSNKL 175
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 335 LRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLR 394
L L SL LS N+LN E F PN L YLDLSSN L +L+ L+ L
Sbjct: 63 LTNLHSLLLSHNHLNFISSE---AFVPVPN-LRYLDLSSNHLHTLDEFLFSDLQALEVLL 118
Query: 395 LSGNSFWGSIPSSIGNLSSLRKLDLSYNGM 424
L N ++ +++ L+KL LS N +
Sbjct: 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 103/249 (41%), Gaps = 33/249 (13%)
Query: 363 PNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYN 422
P N YL+L NS++ + +L++L+ L+LS N + L SL L+L N
Sbjct: 34 PVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDN 93
Query: 423 GMNGTIPESFGKLSELVDANLLQNSWEGI----------LQESQFMNLKRLESFRLTTEP 472
+ ++F LS+L + L N E I L+ LKRLE +E
Sbjct: 94 RLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYI---SEA 150
Query: 473 TKKFVFNVSY------------NWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILR 520
+ + N+ Y N RL+ +++ ++ P Q T L + L
Sbjct: 151 AFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLM 210
Query: 521 NVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLW 580
+ ++ TI + F L S + L LS+N + LP + +P R + NH W
Sbjct: 211 HAQVA-TIERNAFDDLKS-LEELNLSHNNLMS-LPHDLFTPLHRLERVHLNHNP-----W 262
Query: 581 STNADELFL 589
N D L+L
Sbjct: 263 HCNCDVLWL 271
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 233 AVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKL 292
A L +L L L C L+ IP + L+LS N + P LTSL KL
Sbjct: 151 AFEGLVNLRYLNLGMCNLKDIP---NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKL 207
Query: 293 YLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSAN 346
+L N F +LK LE L+LS+N +L LF L RL+ + L+ N
Sbjct: 208 WLMHAQVATIERNAFDDLKSLEELNLSHN-NLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 60/139 (43%), Gaps = 9/139 (6%)
Query: 221 VKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPL---SLPFINFTSISVLDLSENSFNS 277
+ LD LQ LP L L L + QLQ +PL +LP +++VLD+S N S
Sbjct: 60 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-----ALTVLDVSFNRLTS 114
Query: 278 AIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRR 337
L L L +LYL+ N P LE L L+NN DL L L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-DLTELPAGLLNGLEN 173
Query: 338 LKSLDLSANNLNGEVHEFF 356
L +L L N+L FF
Sbjct: 174 LDTLLLQENSLYTIPKGFF 192
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 562 NLRSIDLSSNHFEGTLPLWSTNADELFLQDNRF-SGPLPENIGSLMPRLQRLYLSWNQLS 620
NL +L+ +GTLP+ T L L N+ S PL +G +P L L +S+N+L+
Sbjct: 61 NLDRCELTKLQVDGTLPVLGT----LDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLT 113
Query: 621 GRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLT 668
++ L +LQ L ++ N+L P + + ++NN LT
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT 161
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 59/131 (45%), Gaps = 4/131 (3%)
Query: 231 LQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLF-SLTSL 289
+ A+ L +L L L QLQ +P + F T++ L L EN S +P +F LT+L
Sbjct: 78 ISALKELTNLTYLILTGNQLQSLPNGV-FDKLTNLKELVLVENQLQS-LPDGVFDKLTNL 135
Query: 290 TKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLN 349
T LYL N F L L LDL NN L +F L +LK L L+ N L
Sbjct: 136 TYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNN-QLQSLPEGVFDKLTQLKQLSLNDNQLK 194
Query: 350 GEVHEFFDGFS 360
FD +
Sbjct: 195 SVPDGVFDRLT 205
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 11/114 (9%)
Query: 538 SEITYLILSNNQIKGKLPRQM--NSPNLRSIDLSSNHFEGTLPLWS----TNADELFLQD 591
+ +TYLIL+ NQ++ LP + NL+ + L N + +LP TN L+L
Sbjct: 85 TNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYH 142
Query: 592 NRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCN-LEDLQILSIRSNKLS 644
N+ LP+ + + L RL L NQL +P V + L L+ LS+ N+L
Sbjct: 143 NQLQS-LPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQLK 194
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 68/172 (39%), Gaps = 35/172 (20%)
Query: 252 GIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLK 311
GIP ++ S + LS+ +F LT LT L L +N F +L
Sbjct: 32 GIPADTEKLDLQSTGLATLSDATFRG--------LTKLTWLNLDYNQLQTLSAGVFDDLT 83
Query: 312 LLEVLDLSNN------------------LDLGG-QLPKL----FGILRRLKSLDLSANNL 348
L L L+NN L LGG QL L F L +LK L L+ N L
Sbjct: 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
Query: 349 NGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSF 400
FD + NL+ L LS+N L+ + L LQ + L GN F
Sbjct: 144 QSIPAGAFDKLT----NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 503 SFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNS-P 561
S P + TE + L++ G++ T+ F L+ ++T+L L NQ++ +
Sbjct: 28 SVPSGIPADTE--KLDLQSTGLA-TLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDLT 83
Query: 562 NLRSIDLSSNHFEGTLPLWS----TNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWN 617
L ++ L++N +LPL T D+L+L N+ LP + + +L+ L L+ N
Sbjct: 84 ELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTN 141
Query: 618 QLSGRIPSSVCNLEDLQILSIRSNKL 643
QL + L +LQ LS+ +N+L
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 703 TGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHN 762
T L + LGGNQL SLP + + L+ LRL +N L L NL + LS N
Sbjct: 107 TQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Query: 763 NFS----GAIPRCIGNLSAL-VYGN 782
GA R +G L + ++GN
Sbjct: 166 QLQSVPHGAFDR-LGKLQTITLFGN 189
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 68/172 (39%), Gaps = 35/172 (20%)
Query: 252 GIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLK 311
GIP ++ S + LS+ +F LT LT L L +N F +L
Sbjct: 32 GIPADTEKLDLQSTGLATLSDATFRG--------LTKLTWLNLDYNQLQTLSAGVFDDLT 83
Query: 312 LLEVLDLSNN------------------LDLGG-QLPKL----FGILRRLKSLDLSANNL 348
L L L+NN L LGG QL L F L +LK L L+ N L
Sbjct: 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
Query: 349 NGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSF 400
FD + NL+ L LS+N L+ + L LQ + L GN F
Sbjct: 144 QSIPAGAFDKLT----NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 503 SFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNS-P 561
S P + TE + L++ G++ T+ F L+ ++T+L L NQ++ +
Sbjct: 28 SVPSGIPADTE--KLDLQSTGLA-TLSDATFRGLT-KLTWLNLDYNQLQTLSAGVFDDLT 83
Query: 562 NLRSIDLSSNHFEGTLPLWS----TNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWN 617
L ++ L++N +LPL T D+L+L N+ LP + + +L+ L L+ N
Sbjct: 84 ELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTN 141
Query: 618 QLSGRIPSSVCNLEDLQILSIRSNKL 643
QL + L +LQ LS+ +N+L
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 703 TGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHN 762
T L + LGGNQL SLP + + L+ LRL +N L L NL + LS N
Sbjct: 107 TQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Query: 763 NFS----GAIPRCIGNLSAL-VYGN 782
GA R +G L + ++GN
Sbjct: 166 QLQSVPHGAFDR-LGKLQTITLFGN 189
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 221 VKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPL---SLPFINFTSISVLDLSENSFNS 277
+ LD LQ LP L L L + QLQ +PL +LP +++VLD+S N S
Sbjct: 60 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-----ALTVLDVSFNRLTS 114
Query: 278 AIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL-FGILR 336
L L L +LYL+ N P LE L L+NN QL +L G+L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-----QLTELPAGLLN 169
Query: 337 RLKSLD 342
L++LD
Sbjct: 170 GLENLD 175
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 9/120 (7%)
Query: 543 LILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNA----DELFLQDNRFSGPL 598
L LS+NQ++ P L +D+S N +LPL + EL+L+ N L
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT-L 139
Query: 599 PENIGSLMPRLQRLYLSWNQLSGRIPSSVCN-LEDLQILSIRSNKLSGEFPNCWYHSQMF 657
P + + P+L++L L+ NQL+ +P+ + N LE+L L ++ N L P ++ S +
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 562 NLRSIDLSSNHFEGTLPLWSTNADELFLQDNRF-SGPLPENIGSLMPRLQRLYLSWNQLS 620
NL +L+ +GTLP+ T L L N+ S PL +G +P L L +S+N+L+
Sbjct: 61 NLDRCELTKLQVDGTLPVLGT----LDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLT 113
Query: 621 GRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLT 668
++ L +LQ L ++ N+L P + + ++NN LT
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 221 VKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPL---SLPFINFTSISVLDLSENSFNS 277
+ LD LQ LP L L L + QLQ +PL +LP +++VLD+S N S
Sbjct: 60 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-----ALTVLDVSFNRLTS 114
Query: 278 AIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL-FGILR 336
L L L +LYL+ N P LE L L+NN QL +L G+L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-----QLTELPAGLLN 169
Query: 337 RLKSLD 342
L++LD
Sbjct: 170 GLENLD 175
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 9/120 (7%)
Query: 543 LILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNA----DELFLQDNRFSGPL 598
L LS+NQ++ P L +D+S N +LPL + EL+L+ N L
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT-L 139
Query: 599 PENIGSLMPRLQRLYLSWNQLSGRIPSSVCN-LEDLQILSIRSNKLSGEFPNCWYHSQMF 657
P + + P+L++L L+ NQL+ +P+ + N LE+L L ++ N L P ++ S +
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 562 NLRSIDLSSNHFEGTLPLWSTNADELFLQDNRF-SGPLPENIGSLMPRLQRLYLSWNQLS 620
NL +L+ +GTLP+ T L L N+ S PL +G +P L L +S+N+L+
Sbjct: 61 NLDRCELTKLQVDGTLPVLGT----LDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLT 113
Query: 621 GRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLT 668
++ L +LQ L ++ N+L P + + ++NN LT
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 67/167 (40%), Gaps = 30/167 (17%)
Query: 292 LYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGE 351
LYL N T P F +L L+ L L +N LG +F L +L LDL N L
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 352 VHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNL 411
FD R +L+ L + N L ELP+ + L +L +L L N SIP
Sbjct: 104 PSAVFD----RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL-KSIPHG---- 153
Query: 412 SSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFM 458
+F +LS L A L N W+ ++ ++
Sbjct: 154 -------------------AFDRLSSLTHAYLFGNPWDCECRDIMYL 181
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 59/146 (40%), Gaps = 10/146 (6%)
Query: 253 IPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKL 312
+P +P T+ +L L +N P SL +L +LYL N F +L
Sbjct: 34 VPAGIP----TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ 89
Query: 313 LEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLS 372
L VLDL N L +F L LK L + N L E G R +L +L L
Sbjct: 90 LTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCNKLT----ELPRGIE-RLTHLTHLALD 143
Query: 373 SNSLEGELPKSLGNLKNLQYLRLSGN 398
N L+ + L +L + L GN
Sbjct: 144 QNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 565 SIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIP 624
++D S TNA L+L DN+ + P SL+ L+ LYL NQL G +P
Sbjct: 23 TVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQL-GALP 80
Query: 625 SSVCN-LEDLQILSIRSNKLS 644
V + L L +L + +N+L+
Sbjct: 81 VGVFDSLTQLTVLDLGTNQLT 101
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 18/129 (13%)
Query: 703 TGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHN 762
T LT +DLG NQL+ LP + + L L + N L+ ++P+ + L +L + L N
Sbjct: 88 TQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145
Query: 763 NFS----GAIPRCIGNLSALVYGN--NSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSW 816
GA R A ++GN + E + R N +AD SI + W
Sbjct: 146 QLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLR----------NWVADHTSIAMRW 195
Query: 817 NNLTGQIPD 825
+ PD
Sbjct: 196 DGKAVNDPD 204
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 82/198 (41%), Gaps = 31/198 (15%)
Query: 232 QAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTK 291
QA P L L + + L PF N + VL+LS +++ L L L
Sbjct: 393 QAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRH 452
Query: 292 LYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPK--LFGILRRLKSLDLSANNLN 349
L L+ N F G + K L ++ L+ L LS+ NL
Sbjct: 453 LNLQGNSFQD------------------------GSISKTNLLQMVGSLEILILSSCNLL 488
Query: 350 GEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIG 409
+ F G N+ +LDLS NSL G+ +L +LK L YL ++ N+ P +
Sbjct: 489 SIDQQAFHGLR----NVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLP 543
Query: 410 NLSSLRKLDLSYNGMNGT 427
LS ++LS+N ++ T
Sbjct: 544 ALSQQSIINLSHNPLDCT 561
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 67/175 (38%), Gaps = 31/175 (17%)
Query: 259 FINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDL 318
F FT + LDL+ N +P + + SL KL L N F A+ L L +
Sbjct: 273 FRCFTRVQELDLTAAHLN-GLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYI 331
Query: 319 SNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEG 378
N+ + LDL L + NL+ LDLS + +E
Sbjct: 332 KGNM----------------RKLDLGTRCLE------------KLENLQKLDLSHSDIEA 363
Query: 379 E--LPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPES 431
L NL++LQYL LS N G + L LD+++ ++ P S
Sbjct: 364 SDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHS 418
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 17/158 (10%)
Query: 698 SLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHII 757
+ + C L +D+ L P +NL +L L LL L LQ+L +
Sbjct: 394 AFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHL 453
Query: 758 DLSHNNF-SGAIPRC-----IGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNS 811
+L N+F G+I + +G+L L+ S + + G + +VN
Sbjct: 454 NLQGNSFQDGSISKTNLLQMVGSLEILILS--SCNLLSIDQQAFHG--------LRNVNH 503
Query: 812 IDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQ 849
+DLS N+LTG D + +L L+ LN++ N + P
Sbjct: 504 LDLSHNSLTGDSMDALSHLKGLY-LNMASNNIRIIPPH 540
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 97/251 (38%), Gaps = 60/251 (23%)
Query: 242 ELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTG 301
EL L L G+P + +N S+ L L+ NSF+ S SL LY++ N
Sbjct: 281 ELDLTAAHLNGLPSGIEGMN--SLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKL 338
Query: 302 HIPNE-FANLKLLEVLDLSN-NLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGF 359
+ L+ L+ LDLS+ +++ LR L+ L+LS N G + F
Sbjct: 339 DLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQ---AF 395
Query: 360 SGRPNNLEYLDLSSNSLEGELPKS-------------------------LGNLKNLQYLR 394
P LE LD++ L + P S L L++L++L
Sbjct: 396 KECPQ-LELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLN 454
Query: 395 LSGNSFW-GSIPSS-----IGNLSSL---------------------RKLDLSYNGMNGT 427
L GNSF GSI + +G+L L LDLS+N + G
Sbjct: 455 LQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGD 514
Query: 428 IPESFGKLSEL 438
++ L L
Sbjct: 515 SMDALSHLKGL 525
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 221 VKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPL---SLPFINFTSISVLDLSENSFNS 277
+ LD LQ LP L L L + QLQ +PL +LP +++VLD+S N S
Sbjct: 60 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-----ALTVLDVSFNRLTS 114
Query: 278 AIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL-FGILR 336
L L L +LYL+ N P LE L L+NN QL +L G+L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-----QLTELPAGLLN 169
Query: 337 RLKSLD 342
L++LD
Sbjct: 170 GLENLD 175
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 9/120 (7%)
Query: 543 LILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNA----DELFLQDNRFSGPL 598
L LS+NQ++ P L +D+S N +LPL + EL+L+ N L
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT-L 139
Query: 599 PENIGSLMPRLQRLYLSWNQLSGRIPSSVCN-LEDLQILSIRSNKLSGEFPNCWYHSQMF 657
P + + P+L++L L+ NQL+ +P+ + N LE+L L ++ N L P ++ S +
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 562 NLRSIDLSSNHFEGTLPLWSTNADELFLQDNRF-SGPLPENIGSLMPRLQRLYLSWNQLS 620
NL +L+ +GTLP+ T L L N+ S PL +G +P L L +S+N+L+
Sbjct: 61 NLDRCELTKLQVDGTLPVLGT----LDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLT 113
Query: 621 GRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLT 668
++ L +LQ L ++ N+L P + + ++NN LT
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 65/143 (45%), Gaps = 17/143 (11%)
Query: 221 VKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPL---SLPFINFTSISVLDLSENSFNS 277
+ LD LQ LP L L L + QLQ +PL +LP +++VLD+S N S
Sbjct: 60 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-----ALTVLDVSFNRLTS 114
Query: 278 AIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL-FGILR 336
L L L +LYL+ N P LE L L+NN QL +L G+L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-----QLTELPAGLLN 169
Query: 337 RLKSLD---LSANNLNGEVHEFF 356
L++LD L N+L FF
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFF 192
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 9/120 (7%)
Query: 543 LILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNA----DELFLQDNRFSGPL 598
L LS+NQ++ P L +D+S N +LPL + EL+L+ N L
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT-L 139
Query: 599 PENIGSLMPRLQRLYLSWNQLSGRIPSSVCN-LEDLQILSIRSNKLSGEFPNCWYHSQMF 657
P + + P+L++L L+ NQL+ +P+ + N LE+L L ++ N L P ++ S +
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 562 NLRSIDLSSNHFEGTLPLWSTNADELFLQDNRF-SGPLPENIGSLMPRLQRLYLSWNQLS 620
NL +L+ +GTLP+ T L L N+ S PL +G +P L L +S+N+L+
Sbjct: 61 NLDRCELTKLQVDGTLPVLGT----LDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLT 113
Query: 621 GRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLT 668
++ L +LQ L ++ N+L P + + ++NN LT
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 289 LTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNL 348
+T+LYL N FT +P E +N K L ++DLSNN + + F + +L +L LS N L
Sbjct: 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 349 NGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFW 401
FDG +L L L N + + +L L +L + N +
Sbjct: 91 RCIPPRTFDGL----KSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Query: 361 GRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLS 420
G P ++ L L N +PK L N K+L + LS N S N++ L L LS
Sbjct: 28 GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86
Query: 421 YNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEP 472
YN + P +F L L +L N ++ E F +L L + P
Sbjct: 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANP 137
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%)
Query: 349 NGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI 408
+G F SG ++ LDLS N + L NLQ L L + +
Sbjct: 37 DGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAF 96
Query: 409 GNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRL 468
+L SL LDLS N ++ FG LS L NL+ N ++ + S F NL L++ R+
Sbjct: 97 YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 156
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 33/202 (16%)
Query: 219 GFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSA 278
F K+ ++G L+A L L+ ++G F + S+ LDLS+N +S
Sbjct: 60 SFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA----FYSLGSLEHLDLSDNHLSSL 115
Query: 279 IPPWLFSLTSLTKLYLRWN-FFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRR 337
W L+SL L L N + T + + F NL L+ L + N + F +RR
Sbjct: 116 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN--------VETFSEIRR 167
Query: 338 LKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSG 397
+ F G + N LE LS + + + KS+ ++ +L L LS
Sbjct: 168 ID----------------FAGLTSL-NELEIKALSLRNYQSQSLKSIRDIHHLT-LHLSE 209
Query: 398 NSFWGSIPSSIGNLSSLRKLDL 419
++F I + I LSS+R L+L
Sbjct: 210 SAFLLEIFADI--LSSVRYLEL 229
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 60/139 (43%), Gaps = 9/139 (6%)
Query: 221 VKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPL---SLPFINFTSISVLDLSENSFNS 277
+ LD LQ LP L L L + QLQ +PL +LP +++VLD+S N S
Sbjct: 60 LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-----ALTVLDVSFNRLTS 114
Query: 278 AIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRR 337
L L L +LYL+ N P LE L L+NN +L L L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLEN 173
Query: 338 LKSLDLSANNLNGEVHEFF 356
L +L L N+L FF
Sbjct: 174 LDTLLLQENSLYTIPKGFF 192
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 84/192 (43%), Gaps = 27/192 (14%)
Query: 234 VNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLY 293
V+ + S +E+ L +P LP ++L LSEN + L T LT+L
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 294 LRWNFFTGHIPNEFANLKLLEVLDLSNN----LDLGGQ-LPKLFGI---LRRLKSLDLSA 345
L T + L +L LDLS+N L L GQ LP L + RL SL L A
Sbjct: 62 LDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 346 NNLNGEVHEFF----------DGFSGRPNNLEYLDLSSNSLEGELPKSLGN-LKNLQYLR 394
GE+ E + G LE L L++N+L ELP L N L+NL L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLL 178
Query: 395 LSGNSFWGSIPS 406
L NS + +IP
Sbjct: 179 LQENSLY-TIPK 189
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 562 NLRSIDLSSNHFEGTLPLWSTNADELFLQDNRF-SGPLPENIGSLMPRLQRLYLSWNQLS 620
NL +L+ +GTLP+ T L L N+ S PL +G +P L L +S+N+L+
Sbjct: 61 NLDRAELTKLQVDGTLPVLGT----LDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLT 113
Query: 621 GRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLT 668
++ L +LQ L ++ N+L P + + ++NN+LT
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 60/139 (43%), Gaps = 9/139 (6%)
Query: 221 VKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPL---SLPFINFTSISVLDLSENSFNS 277
+ LD LQ LP L L L + QLQ +PL +LP +++VLD+S N S
Sbjct: 61 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-----ALTVLDVSFNRLTS 115
Query: 278 AIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRR 337
L L L +LYL+ N P LE L L+NN +L L L
Sbjct: 116 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLEN 174
Query: 338 LKSLDLSANNLNGEVHEFF 356
L +L L N+L FF
Sbjct: 175 LDTLLLQENSLYTIPKGFF 193
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 84/192 (43%), Gaps = 27/192 (14%)
Query: 234 VNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLY 293
V+ + S +E+ L +P LP ++L LSEN + L T LT+L
Sbjct: 7 VSKVASHLEVNCDKRNLTALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQLN 62
Query: 294 LRWNFFTGHIPNEFANLKLLEVLDLSNN----LDLGGQ-LPKLFGI---LRRLKSLDLSA 345
L T + L +L LDLS+N L L GQ LP L + RL SL L A
Sbjct: 63 LDRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 120
Query: 346 NNLNGEVHEFF----------DGFSGRPNNLEYLDLSSNSLEGELPKSLGN-LKNLQYLR 394
GE+ E + G LE L L++N+L ELP L N L+NL L
Sbjct: 121 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLL 179
Query: 395 LSGNSFWGSIPS 406
L NS + +IP
Sbjct: 180 LQENSLY-TIPK 190
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 562 NLRSIDLSSNHFEGTLPLWSTNADELFLQDNRF-SGPLPENIGSLMPRLQRLYLSWNQLS 620
NL +L+ +GTLP+ T L L N+ S PL +G +P L L +S+N+L+
Sbjct: 62 NLDRCELTKLQVDGTLPVLGT----LDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLT 114
Query: 621 GRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLT 668
++ L +LQ L ++ N+L P + + ++NN+LT
Sbjct: 115 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 162
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 60/139 (43%), Gaps = 9/139 (6%)
Query: 221 VKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPL---SLPFINFTSISVLDLSENSFNS 277
+ LD LQ LP L L L + QLQ +PL +LP +++VLD+S N S
Sbjct: 60 LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-----ALTVLDVSFNRLTS 114
Query: 278 AIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRR 337
L L L +LYL+ N P LE L L+NN +L L L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLEN 173
Query: 338 LKSLDLSANNLNGEVHEFF 356
L +L L N+L FF
Sbjct: 174 LDTLLLQENSLYTIPKGFF 192
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 84/192 (43%), Gaps = 27/192 (14%)
Query: 234 VNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLY 293
V+ + S +E+ L +P LP ++L LSEN + L T LT+L
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 294 LRWNFFTGHIPNEFANLKLLEVLDLSNN----LDLGGQ-LPKLFGI---LRRLKSLDLSA 345
L T + L +L LDLS+N L L GQ LP L + RL SL L A
Sbjct: 62 LDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 346 NNLNGEVHEFF----------DGFSGRPNNLEYLDLSSNSLEGELPKSLGN-LKNLQYLR 394
GE+ E + G LE L L++N+L ELP L N L+NL L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLL 178
Query: 395 LSGNSFWGSIPS 406
L NS + +IP
Sbjct: 179 LQENSLY-TIPK 189
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 562 NLRSIDLSSNHFEGTLPLWSTNADELFLQDNRF-SGPLPENIGSLMPRLQRLYLSWNQLS 620
NL +L+ +GTLP+ T L L N+ S PL +G +P L L +S+N+L+
Sbjct: 61 NLDRAELTKLQVDGTLPVLGT----LDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLT 113
Query: 621 GRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLT 668
++ L +LQ L ++ N+L P + + ++NN+LT
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 60/139 (43%), Gaps = 9/139 (6%)
Query: 221 VKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPL---SLPFINFTSISVLDLSENSFNS 277
+ LD LQ LP L L L + QLQ +PL +LP +++VLD+S N S
Sbjct: 60 LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-----ALTVLDVSFNRLTS 114
Query: 278 AIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRR 337
L L L +LYL+ N P LE L L+NN +L L L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLEN 173
Query: 338 LKSLDLSANNLNGEVHEFF 356
L +L L N+L FF
Sbjct: 174 LDTLLLQENSLYTIPKGFF 192
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 84/192 (43%), Gaps = 27/192 (14%)
Query: 234 VNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLY 293
V+ + S +E+ L +P LP ++L LSEN + L T LT+L
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 294 LRWNFFTGHIPNEFANLKLLEVLDLSNN----LDLGGQ-LPKLFGI---LRRLKSLDLSA 345
L T + L +L LDLS+N L L GQ LP L + RL SL L A
Sbjct: 62 LDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 346 NNLNGEVHEFF----------DGFSGRPNNLEYLDLSSNSLEGELPKSLGN-LKNLQYLR 394
GE+ E + G LE L L++N+L ELP L N L+NL L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLL 178
Query: 395 LSGNSFWGSIPS 406
L NS + +IP
Sbjct: 179 LQENSLY-TIPK 189
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 562 NLRSIDLSSNHFEGTLPLWSTNADELFLQDNRF-SGPLPENIGSLMPRLQRLYLSWNQLS 620
NL +L+ +GTLP+ T L L N+ S PL +G +P L L +S+N+L+
Sbjct: 61 NLDRAELTKLQVDGTLPVLGT----LDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLT 113
Query: 621 GRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLT 668
++ L +LQ L ++ N+L P + + ++NN+LT
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%)
Query: 349 NGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI 408
+G F SG ++ LDLS N + L NLQ L L + +
Sbjct: 11 DGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAF 70
Query: 409 GNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRL 468
+L SL LDLS N ++ FG LS L NL+ N ++ + S F NL L++ R+
Sbjct: 71 YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 33/202 (16%)
Query: 219 GFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSA 278
F K+ ++G L+A L L+ ++G F + S+ LDLS+N +S
Sbjct: 34 SFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA----FYSLGSLEHLDLSDNHLSSL 89
Query: 279 IPPWLFSLTSLTKLYLRWN-FFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRR 337
W L+SL L L N + T + + F NL L+ L + N + F +RR
Sbjct: 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN--------VETFSEIRR 141
Query: 338 LKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSG 397
+ F G + N LE LS + + + KS+ ++ +L L LS
Sbjct: 142 ID----------------FAGLTSL-NELEIKALSLRNYQSQSLKSIRDIHHLT-LHLSE 183
Query: 398 NSFWGSIPSSIGNLSSLRKLDL 419
++F I + I LSS+R L+L
Sbjct: 184 SAFLLEIFADI--LSSVRYLEL 203
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 141/351 (40%), Gaps = 66/351 (18%)
Query: 514 LTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHF 573
LT + N ++D P +KL ++++NNQI P N NL + L +N
Sbjct: 70 LTQINFSNNQLTDITPLKNLTKLVD----ILMNNNQIADITPL-ANLTNLTGLTLFNNQI 124
Query: 574 EGTLPLWS-TNADELFLQDNRFSGPLPENIGSL--MPRLQRLYLSWNQLSGRIPSSVCNL 630
PL + TN + L L N S +I +L + LQ+L NQ++ P + NL
Sbjct: 125 TDIDPLKNLTNLNRLELSSNTIS-----DISALSGLTSLQQLSFG-NQVTDLKP--LANL 176
Query: 631 EDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPXXXXXXXXXXXXXXXXXX 690
L+ L I SNK+S + + +NN ++ P
Sbjct: 177 TTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK 234
Query: 691 XXXXIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCN 750
+L + T LT +DL NQ+S PL L+ L+L +N +S P L
Sbjct: 235 DI----GTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISP--LAG 285
Query: 751 LQNLHIIDLSHNNFSGAIPRCIGNLSALVY-----GNNSEV--------FQQLIWRVVKG 797
L L ++L+ N P I NL L Y N S++ Q+L +
Sbjct: 286 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF----- 338
Query: 798 RNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIP 848
Y+N ++DV+S + NL+ ++ L+ HNQ+S P
Sbjct: 339 ----YNNKVSDVSS---------------LANLTNINWLSAGHNQISDLTP 370
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 104/236 (44%), Gaps = 34/236 (14%)
Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRW 296
L +L L L Q+ I P N T+++ L+LS N+ + L LTSL +L
Sbjct: 111 LTNLTGLTLFNNQITDID---PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSF-G 164
Query: 297 NFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL--FGILRRLKSLD--LSANNLNGEV 352
N T P ANL LE LD+S+N K+ +L +L +L+ ++ NN ++
Sbjct: 165 NQVTDLKP--LANLTTLERLDISSN--------KVSDISVLAKLTNLESLIATNNQISDI 214
Query: 353 HEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLS 412
G NL+ L L+ N L+ +L +L NL L L+ N P + L+
Sbjct: 215 TPL-----GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLT 265
Query: 413 SLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRL 468
L +L L N ++ P L+ L + L +N E I S NLK L L
Sbjct: 266 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI---SPISNLKNLTYLTL 316
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 141/351 (40%), Gaps = 66/351 (18%)
Query: 514 LTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHF 573
LT + N ++D P +KL ++++NNQI P N NL + L +N
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVD----ILMNNNQIADITPL-ANLTNLTGLTLFNNQI 119
Query: 574 EGTLPLWS-TNADELFLQDNRFSGPLPENIGSL--MPRLQRLYLSWNQLSGRIPSSVCNL 630
PL + TN + L L N S +I +L + LQ+L NQ++ P + NL
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTIS-----DISALSGLTSLQQLNFG-NQVTDLKP--LANL 171
Query: 631 EDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPXXXXXXXXXXXXXXXXXX 690
L+ L I SNK+S + + +NN ++ P
Sbjct: 172 TTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK 229
Query: 691 XXXXIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCN 750
+L + T LT +DL NQ+S PL L+ L+L +N +S P L
Sbjct: 230 DI----GTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISP--LAG 280
Query: 751 LQNLHIIDLSHNNFSGAIPRCIGNLSALVY-----GNNSEV--------FQQLIWRVVKG 797
L L ++L+ N P I NL L Y N S++ Q+L +
Sbjct: 281 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF----- 333
Query: 798 RNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIP 848
Y+N ++DV+S + NL+ ++ L+ HNQ+S P
Sbjct: 334 ----YNNKVSDVSS---------------LANLTNINWLSAGHNQISDLTP 365
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 104/236 (44%), Gaps = 34/236 (14%)
Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRW 296
L +L L L Q+ I P N T+++ L+LS N+ + L LTSL +L
Sbjct: 106 LTNLTGLTLFNNQITDID---PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNF-G 159
Query: 297 NFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL--FGILRRLKSLD--LSANNLNGEV 352
N T P ANL LE LD+S+N K+ +L +L +L+ ++ NN ++
Sbjct: 160 NQVTDLKP--LANLTTLERLDISSN--------KVSDISVLAKLTNLESLIATNNQISDI 209
Query: 353 HEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLS 412
G NL+ L L+ N L+ +L +L NL L L+ N P + L+
Sbjct: 210 TPL-----GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLT 260
Query: 413 SLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRL 468
L +L L N ++ P L+ L + L +N E I S NLK L L
Sbjct: 261 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI---SPISNLKNLTYLTL 311
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 104/236 (44%), Gaps = 34/236 (14%)
Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRW 296
L +L L L Q+ I P N T+++ L+LS N+ + L LTSL +L
Sbjct: 110 LTNLTGLTLFNNQITDID---PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSF-G 163
Query: 297 NFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL--FGILRRLKSLD--LSANNLNGEV 352
N T P ANL LE LD+S+N K+ +L +L +L+ ++ NN ++
Sbjct: 164 NQVTDLKP--LANLTTLERLDISSN--------KVSDISVLAKLTNLESLIATNNQISDI 213
Query: 353 HEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLS 412
G NL+ L L+ N L+ +L +L NL L L+ N P + L+
Sbjct: 214 TPL-----GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLT 264
Query: 413 SLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRL 468
L +L L N ++ P L+ L + L +N E I S NLK L L
Sbjct: 265 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI---SPISNLKNLTYLTL 315
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 110/270 (40%), Gaps = 29/270 (10%)
Query: 514 LTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHF 573
LT + N ++D P +KL ++++NNQI P N NL + L +N
Sbjct: 69 LTQINFSNNQLTDITPLKNLTKLVD----ILMNNNQIADITPL-ANLTNLTGLTLFNNQI 123
Query: 574 EGTLPLWS-TNADELFLQDNRFSGPLPENIGSL--MPRLQRLYLSWNQLSGRIPSSVCNL 630
PL + TN + L L N S +I +L + LQ+L NQ++ P + NL
Sbjct: 124 TDIDPLKNLTNLNRLELSSNTIS-----DISALSGLTSLQQLSFG-NQVTDLKP--LANL 175
Query: 631 EDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPXXXXXXXXXXXXXXXXXX 690
L+ L I SNK+S + + +NN ++ P
Sbjct: 176 TTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK 233
Query: 691 XXXXIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCN 750
+L + T LT +DL NQ+S PL L+ L+L +N +S P L
Sbjct: 234 DI----GTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISP--LAG 284
Query: 751 LQNLHIIDLSHNNFSGAIPRCIGNLSALVY 780
L L ++L+ N P I NL L Y
Sbjct: 285 LTALTNLELNENQLEDISP--ISNLKNLTY 312
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 15/154 (9%)
Query: 699 LQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIID 758
L+N T L I + NQ++ PL NL++ L L +N ++ P L NL NL+ ++
Sbjct: 85 LKNLTKLVDILMNNNQIADITPL---ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLE 139
Query: 759 LSHNNFSG-AIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWN 817
LS N S + + +L L +GN + L R SN ++D+ S+
Sbjct: 140 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLT 198
Query: 818 NL------TGQIPD--EIGNLSALHILNLSHNQL 843
NL QI D +G L+ L L+L+ NQL
Sbjct: 199 NLESLIATNNQISDITPLGILTNLDELSLNGNQL 232
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 60/139 (43%), Gaps = 9/139 (6%)
Query: 221 VKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPL---SLPFINFTSISVLDLSENSFNS 277
+ LD LQ LP L L L + QLQ +PL +LP +++VLD+S N S
Sbjct: 60 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP-----ALTVLDVSFNRLTS 114
Query: 278 AIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRR 337
L L L +LYL+ N P LE L L+NN +L L L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLEN 173
Query: 338 LKSLDLSANNLNGEVHEFF 356
L +L L N+L FF
Sbjct: 174 LDTLLLQENSLYTIPKGFF 192
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 84/192 (43%), Gaps = 27/192 (14%)
Query: 234 VNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLY 293
V+ + S +E+ L +P LP ++L LSEN + L T LT+L
Sbjct: 6 VSKVASHLEVNCDKRDLTALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 294 LRWNFFTGHIPNEFANLKLLEVLDLSNN----LDLGGQ-LPKLFGI---LRRLKSLDLSA 345
L T + L +L LDLS+N L L GQ LP L + RL SL L A
Sbjct: 62 LDRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 346 NNLNGEVHEFF----------DGFSGRPNNLEYLDLSSNSLEGELPKSLGN-LKNLQYLR 394
GE+ E + G LE L L++N+L ELP L N L+NL L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLL 178
Query: 395 LSGNSFWGSIPS 406
L NS + +IP
Sbjct: 179 LQENSLY-TIPK 189
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 562 NLRSIDLSSNHFEGTLPLWSTNADELFLQDNRF-SGPLPENIGSLMPRLQRLYLSWNQLS 620
NL +L+ +GTLP+ T L L N+ S PL +G +P L L +S+N+L+
Sbjct: 61 NLDRCELTKLQVDGTLPVLGT----LDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLT 113
Query: 621 GRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLT 668
++ L +LQ L ++ N+L P + + ++NN+LT
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 71/170 (41%), Gaps = 9/170 (5%)
Query: 232 QAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTK 291
+A P L L L + +L+ PF N + VL+LS + + + L +L
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453
Query: 292 LYLRWNFF-TGHI--PNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNL 348
L L+ N F G+I N L LE+L LS DL F L+ + +DLS N L
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLS-FCDLSSIDQHAFTSLKMMNHVDLSHNRL 512
Query: 349 NGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGN 398
E G YL+L+SN + LP L L + + L N
Sbjct: 513 TSSSIEALSHLKGI-----YLNLASNHISIILPSLLPILSQQRTINLRQN 557
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 67/168 (39%), Gaps = 32/168 (19%)
Query: 342 DLSANNLNGEVHEFFD-------GFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLR 394
++S ++N + H FF+ FSG L+ LDL++ L ELP L L L+ L
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSG----LQELDLTATHL-SELPSGLVGLSTLKKLV 307
Query: 395 LSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQE 454
LS N F S N SL LS G + G L L + L S + I
Sbjct: 308 LSANKFENLCQISASNFPSLTH--LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365
Query: 455 S----QFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENC 498
Q NL L+S N+SYN P LK+ + C
Sbjct: 366 DCCNLQLRNLSHLQS------------LNLSYN--EPLSLKTEAFKEC 399
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 104/236 (44%), Gaps = 34/236 (14%)
Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRW 296
L +L L L Q+ I P N T+++ L+LS N+ + L LTSL +L
Sbjct: 106 LTNLTGLTLFNNQITDID---PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNF-G 159
Query: 297 NFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL--FGILRRLKSLD--LSANNLNGEV 352
N T P ANL LE LD+S+N K+ +L +L +L+ ++ NN ++
Sbjct: 160 NQVTDLKP--LANLTTLERLDISSN--------KVSDISVLAKLTNLESLIATNNQISDI 209
Query: 353 HEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLS 412
G NL+ L L+ N L+ +L +L NL L L+ N P + L+
Sbjct: 210 TPL-----GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLT 260
Query: 413 SLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRL 468
L +L L N ++ P L+ L + L +N E I S NLK L L
Sbjct: 261 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI---SPISNLKNLTYLTL 311
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 110/270 (40%), Gaps = 29/270 (10%)
Query: 514 LTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHF 573
LT + N ++D P +KL ++++NNQI P N NL + L +N
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVD----ILMNNNQIADITPL-ANLTNLTGLTLFNNQI 119
Query: 574 EGTLPLWS-TNADELFLQDNRFSGPLPENIGSL--MPRLQRLYLSWNQLSGRIPSSVCNL 630
PL + TN + L L N S +I +L + LQ+L NQ++ P + NL
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTIS-----DISALSGLTSLQQLNFG-NQVTDLKP--LANL 171
Query: 631 EDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPXXXXXXXXXXXXXXXXXX 690
L+ L I SNK+S + + +NN ++ P
Sbjct: 172 TTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK 229
Query: 691 XXXXIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCN 750
+L + T LT +DL NQ+S PL L+ L+L +N +S P L
Sbjct: 230 DI----GTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISP--LAG 280
Query: 751 LQNLHIIDLSHNNFSGAIPRCIGNLSALVY 780
L L ++L+ N P I NL L Y
Sbjct: 281 LTALTNLELNENQLEDISP--ISNLKNLTY 308
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 73/178 (41%), Gaps = 23/178 (12%)
Query: 264 SISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLS-NNL 322
S+ L+L E+ F+ T L +L L G +P+ L LL+ L LS N+
Sbjct: 252 SVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHF 310
Query: 323 DLGGQL-----PKLFGILRR--LKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNS 375
D Q+ P L + R +K L L G + NL+ LDLS N
Sbjct: 311 DQLCQISAANFPSLTHLYIRGNVKKLHLGV------------GCLEKLGNLQTLDLSHND 358
Query: 376 LEGE--LPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPES 431
+E L NL +LQ L LS N G + L LDL++ ++ P+S
Sbjct: 359 IEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQS 416
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 84/199 (42%), Gaps = 33/199 (16%)
Query: 232 QAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTK 291
QA P L L L + +L PF N + VL+L+ +++ L L L
Sbjct: 391 QAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRH 450
Query: 292 LYLRWNFF---TGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNL 348
L L+ N F T N + LEVL LS+ G+L S+D A +
Sbjct: 451 LNLKGNHFQDGTITKTNLLQTVGSLEVLILSS-----------CGLL----SIDQQAFHS 495
Query: 349 NGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI 408
G+ + ++DLS NSL + SL +LK + YL L+ NS P +
Sbjct: 496 LGK--------------MSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISPRLL 540
Query: 409 GNLSSLRKLDLSYNGMNGT 427
LS ++LS+N ++ T
Sbjct: 541 PILSQQSTINLSHNPLDCT 559
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 78/350 (22%), Positives = 140/350 (40%), Gaps = 64/350 (18%)
Query: 363 PNNLEYLDLSSNSLEGELPKSLGNLKNLQY-------------------------LRLSG 397
P ++ Y+DLS NS+ S L++LQ+ L+L
Sbjct: 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88
Query: 398 NSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPES--FGKLSELVDANLLQNSWEGILQES 455
N F + L++L L L+ ++G + F L+ L L N+ + I S
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 456 QFMNLKRLESFRLTTEPTKKF----VFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQ 511
F+N++R LT K + N RL SI +++ WL +
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN-----EYWLGWE 203
Query: 512 --------TELTSVILRNVGISDTIPGDWFSKLS-SEITYLILSNNQIKG--------KL 554
T +T++ L G +++ +F ++ ++I LILSN+ G K
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263
Query: 555 P-----RQMNSPNLRSIDLSSNHFEGTLP-LWS--TNADELFLQDNRFSGPLPENIGSLM 606
P + + + +++ DLS + L ++S T+ ++L L N + + +N +
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGL 322
Query: 607 PRLQRLYLSWNQLSGRIPSSVCN-LEDLQILSIRSNKLSGEFPNCWYHSQ 655
L+ L L NQL +P + + L LQ + + +N P Y S+
Sbjct: 323 THLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 371
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 76/203 (37%), Gaps = 61/203 (30%)
Query: 258 PFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLD 317
PF N TSI+ LDLS N F ++ F + TK ++ L
Sbjct: 208 PFKN-TSITTLDLSGNGFKESMAKRFFDAIAGTK---------------------IQSLI 245
Query: 318 LSNNLDLGGQL-------PKLFGI----LRRLKSLDLSANNLNGEVHEFFDGFSGRPNNL 366
LSN+ ++G P F +K+ DLS + + + F F+ +L
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT----DL 301
Query: 367 EYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNG 426
E L L+ N + ++ N+FWG L+ L++L L N +
Sbjct: 302 EQLTLAQNEIN----------------KIDDNAFWG--------LTHLKELALDTNQLKS 337
Query: 427 TIPESFGKLSELVDANLLQNSWE 449
F +L+ L L N W+
Sbjct: 338 VPDGIFDRLTSLQKIWLHTNPWD 360
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 84/214 (39%), Gaps = 42/214 (19%)
Query: 242 ELRLHYCQ---LQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNF 298
LR+ C L+ +P LP ++LDL N +L +L L L N
Sbjct: 32 HLRVVQCSDLGLEKVPKDLP----PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87
Query: 299 FTGHIPNEFANLKLLEVLDLSNN--LDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFF 356
+ P FA L LE L LS N +L ++PK L+ L + N + F
Sbjct: 88 ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK------TLQELRVHENEITKVRKSVF 141
Query: 357 DGFSGRPNNLEYLDLSSNSLE--GELPKSLGNLKNLQYLR-------------------- 394
+G N + ++L +N L+ G + +K L Y+R
Sbjct: 142 NGL----NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL 197
Query: 395 -LSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGT 427
L GN +S+ L++L KL LS+N ++
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 116/285 (40%), Gaps = 60/285 (21%)
Query: 363 PNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYN 422
P + LDL +N + NLKNL L L N P + L L +L LS N
Sbjct: 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Query: 423 GMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSY 482
+ +PE K L + + +N + ++S F L ++ L T P
Sbjct: 111 QLK-ELPEKMPK--TLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNP---------- 156
Query: 483 NWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITY 542
LKS IEN Q +L+ + + + I+ TIP L +T
Sbjct: 157 -------LKSSGIENG--------AFQGMKKLSYIRIADTNIT-TIP----QGLPPSLTE 196
Query: 543 LILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENI 602
L L N+I ++++ +L+ ++ N +L L N S +
Sbjct: 197 LHLDGNKI-----TKVDAASLKGLN---------------NLAKLGLSFNSISA---VDN 233
Query: 603 GSL--MPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSG 645
GSL P L+ L+L+ N+L ++P + + + +Q++ + +N +S
Sbjct: 234 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 94/220 (42%), Gaps = 21/220 (9%)
Query: 219 GFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSA 278
F L H+G+ + P L L L C++Q I + + + +S L L+ N S
Sbjct: 37 SFNPLRHLGS---YSFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSL 92
Query: 279 IPPWLFSLTSLTKLYLRW-------NFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL 331
L+SL KL NF GH LK L+ L++++NL +LP+
Sbjct: 93 ALGAFSGLSSLQKLVAVETNLASLENFPIGH-------LKTLKELNVAHNLIQSFKLPEY 145
Query: 332 FGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQ 391
F L L+ LDLS+N + P LDLS N + P + ++ L+
Sbjct: 146 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LK 204
Query: 392 YLRLSGNSFWGSIPSSI-GNLSSLRKLDLSYNGMNGTIPE 430
L L N S+P I L+SL+K+ L N + + P
Sbjct: 205 ELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 243
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 84/213 (39%), Gaps = 42/213 (19%)
Query: 243 LRLHYCQ---LQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFF 299
LR+ C L+ +P LP ++LDL N +L +L L L N
Sbjct: 33 LRVVQCSDLGLEKVPKDLP----PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 300 TGHIPNEFANLKLLEVLDLSNN--LDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFD 357
+ P FA L LE L LS N +L ++PK L+ L + N + F+
Sbjct: 89 SKISPGAFAPLVKLERLYLSKNQLKELPEKMPK------TLQELRVHENEITKVRKSVFN 142
Query: 358 GFSGRPNNLEYLDLSSNSLE--GELPKSLGNLKNLQYLR--------------------- 394
G N + ++L +N L+ G + +K L Y+R
Sbjct: 143 GL----NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH 198
Query: 395 LSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGT 427
L GN +S+ L++L KL LS+N ++
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 116/285 (40%), Gaps = 60/285 (21%)
Query: 363 PNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYN 422
P + LDL +N + NLKNL L L N P + L L +L LS N
Sbjct: 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Query: 423 GMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSY 482
+ +PE K L + + +N + ++S F L ++ L T P
Sbjct: 111 QLK-ELPEKMPK--TLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNP---------- 156
Query: 483 NWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITY 542
LKS IEN Q +L+ + + + I+ TIP L +T
Sbjct: 157 -------LKSSGIENG--------AFQGMKKLSYIRIADTNIT-TIP----QGLPPSLTE 196
Query: 543 LILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENI 602
L L N+I ++++ +L+ ++ N +L L N S +
Sbjct: 197 LHLDGNKI-----TKVDAASLKGLN---------------NLAKLGLSFNSISA---VDN 233
Query: 603 GSL--MPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSG 645
GSL P L+ L+L+ N+L ++P + + + +Q++ + +N +S
Sbjct: 234 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 94/220 (42%), Gaps = 21/220 (9%)
Query: 219 GFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSA 278
F L H+G+ + P L L L C++Q I + + + +S L L+ N S
Sbjct: 36 SFNPLRHLGS---YSFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSL 91
Query: 279 IPPWLFSLTSLTKLYLRW-------NFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL 331
L+SL KL NF GH LK L+ L++++NL +LP+
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGH-------LKTLKELNVAHNLIQSFKLPEY 144
Query: 332 FGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQ 391
F L L+ LDLS+N + P LDLS N + P + ++ L+
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LK 203
Query: 392 YLRLSGNSFWGSIPSSI-GNLSSLRKLDLSYNGMNGTIPE 430
L L N S+P I L+SL+K+ L N + + P
Sbjct: 204 ELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 87/202 (43%), Gaps = 18/202 (8%)
Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRW 296
P L L L C++Q I + + + +S L L+ N S L+SL KL
Sbjct: 52 FPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 110
Query: 297 -------NFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLN 349
NF GH LK L+ L++++NL +LP+ F L L+ LDLS+N +
Sbjct: 111 TNLASLENFPIGH-------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Query: 350 GEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI- 408
P LDLS N + P + ++ L+ L L N S+P I
Sbjct: 164 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQL-KSVPDGIF 221
Query: 409 GNLSSLRKLDLSYNGMNGTIPE 430
L+SL+K+ L N + + P
Sbjct: 222 DRLTSLQKIWLHTNPWDCSCPR 243
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 87/202 (43%), Gaps = 18/202 (8%)
Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRW 296
P L L L C++Q I + + + +S L L+ N S L+SL KL
Sbjct: 53 FPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 111
Query: 297 -------NFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLN 349
NF GH LK L+ L++++NL +LP+ F L L+ LDLS+N +
Sbjct: 112 TNLASLENFPIGH-------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Query: 350 GEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI- 408
P LDLS N + P + ++ L+ L L N S+P I
Sbjct: 165 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQL-KSVPDGIF 222
Query: 409 GNLSSLRKLDLSYNGMNGTIPE 430
L+SL+K+ L N + + P
Sbjct: 223 DRLTSLQKIWLHTNPWDCSCPR 244
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 387 LKNLQYLRLSGN--SFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLL 444
L +L YL LS N SF G S +SLR LDLS+NG + +F L EL +
Sbjct: 344 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQ 402
Query: 445 QNSWEGILQESQFMNLKRLESFRLTTEPTK 474
++ + + + S F++L++L ++ TK
Sbjct: 403 HSTLKRVTEFSAFLSLEKLLYLDISYTNTK 432
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 66/172 (38%), Gaps = 18/172 (10%)
Query: 339 KSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGN 398
K++DLS N L F FS L++LDLS +E K+ L +L L L+GN
Sbjct: 30 KNIDLSFNPLKILKSYSFSNFS----ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 85
Query: 399 SFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFM 458
P S L+SL L + G+L L N+ N + F
Sbjct: 86 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 145
Query: 459 NLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQI--ENCQVGPSFPVWL 508
NL L L SYN++ + +Q EN QV S + L
Sbjct: 146 NLTNLVHVDL------------SYNYIQTITVNDLQFLRENPQVNLSLDMSL 185
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 69/167 (41%), Gaps = 24/167 (14%)
Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRW 296
L L L + L+ + F++ + LD+S + LTSL L +
Sbjct: 393 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 452
Query: 297 NFFTGH-IPNEFANLKLLEVLDLSNNLDLGGQLPKL----FGILRRLKSLDLSANNLNGE 351
N F + + N FAN L LDLS QL ++ F L RL+ L++S NNL
Sbjct: 453 NSFKDNTLSNVFANTTNLTFLDLSK-----CQLEQISWGVFDTLHRLQLLNMSHNNL--- 504
Query: 352 VHEFFD-GFSGRPNNLEYLDLSSNSLEG------ELPKSLG--NLKN 389
F D + +L LD S N +E PKSL NL N
Sbjct: 505 --LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 549
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 18/178 (10%)
Query: 248 CQLQGIP-LSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNF--FTGHIP 304
CQL+ P L LPF+ +++ ++ SF P SL+ L L N F+G
Sbjct: 312 CQLKQFPTLDLPFLKSLTLT-MNKGSISFKKVALP------SLSYLDLSRNALSFSGCCS 364
Query: 305 NEFANLKLLEVLDLSNNLDLGGQLPKL-FGILRRLKSLDLSANNLNGEVHEFFDGFSGRP 363
L LDLS N G + F L L+ LD + L V EF S
Sbjct: 365 YSDLGTNSLRHLDLSFN---GAIIMSANFMGLEELQHLDFQHSTLK-RVTEFSAFLSLEK 420
Query: 364 NNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRKLDLS 420
L YLD+S + + + L +L L+++GNSF + S++ N ++L LDLS
Sbjct: 421 --LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 476
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 96/415 (23%), Positives = 168/415 (40%), Gaps = 60/415 (14%)
Query: 302 HIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNG-EVHEFFDGFS 360
H+P + + L LS N ++P + L L+ L LS N + + H F
Sbjct: 45 HVPKDLP--PRTKALSLSQNSISELRMPDI-SFLSELRVLRLSHNRIRSLDFHVFLFN-- 99
Query: 361 GRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSF-WGSIPSSIGNLSSLRKLDL 419
+LEYLD+S N L+ S + +L++L LS N F + GNL+ L L L
Sbjct: 100 ---QDLEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL 153
Query: 420 SYNGMN--GTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFV 477
S +P + LS ++ +L+ +G E++ + + L P F
Sbjct: 154 SAAKFRQLDLLPVAHLHLSCIL-LDLVSYHIKG--GETESLQIPNTTVLHLVFHPNSLFS 210
Query: 478 --FNVSYNWVPPFRLKSIQI--ENCQVGPSFPVWLQVQTELTSVILR------------- 520
N+S N + +L +I++ ENCQ +F L L +V L+
Sbjct: 211 VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270
Query: 521 --------------NVGISDTIPGDWFSKLSSEITYLILSN--NQI----KGKLPRQMNS 560
N+ I++ I + F+ + + L++ + NQ+ K L
Sbjct: 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330
Query: 561 PNLRSIDLSSNHF-EGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQL 619
N++ + +S F P ++ L N F+ + + +L RLQ L L N L
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL-KRLQTLILQRNGL 389
Query: 620 SG--RIPSSVCNLEDLQILSIRSNKL-SGEFPNCWYHSQMFWGIDISNNSLTGSI 671
++ N+ L+ L + N L S + ++ +++S+N LTGS+
Sbjct: 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 562 NLRSIDLSSNHFEGTLPLWS-TNADELFLQDNRFSGPLPENIGSLMPR-LQRLYLSWNQL 619
NL+ + LS N PL T +EL + NR +N+ + L RL+L N+L
Sbjct: 64 NLKELHLSHNQISDLSPLKDLTKLEELSVNRNRL-----KNLNGIPSACLSRLFLDNNEL 118
Query: 620 SGRIPSSVCNLEDLQILSIRSNKLS 644
R S+ +L++L+ILSIR+NKL
Sbjct: 119 --RDTDSLIHLKNLEILSIRNNKLK 141
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 387 LKNLQYLRLSGN--SFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLL 444
L +L YL LS N SF G S +SLR LDLS+NG + +F L EL +
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQ 407
Query: 445 QNSWEGILQESQFMNLKRLESFRLTTEPTK 474
++ + + + S F++L++L ++ TK
Sbjct: 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 66/172 (38%), Gaps = 18/172 (10%)
Query: 339 KSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGN 398
K++DLS N L F FS L++LDLS +E K+ L +L L L+GN
Sbjct: 35 KNIDLSFNPLKILKSYSFSNFS----ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90
Query: 399 SFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFM 458
P S L+SL L + G+L L N+ N + F
Sbjct: 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150
Query: 459 NLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQI--ENCQVGPSFPVWL 508
NL L L SYN++ + +Q EN QV S + L
Sbjct: 151 NLTNLVHVDL------------SYNYIQTITVNDLQFLRENPQVNLSLDMSL 190
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 69/167 (41%), Gaps = 24/167 (14%)
Query: 237 LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRW 296
L L L + L+ + F++ + LD+S + LTSL L +
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457
Query: 297 NFFTGH-IPNEFANLKLLEVLDLSNNLDLGGQLPKL----FGILRRLKSLDLSANNLNGE 351
N F + + N FAN L LDLS QL ++ F L RL+ L++S NNL
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSK-----CQLEQISWGVFDTLHRLQLLNMSHNNL--- 509
Query: 352 VHEFFD-GFSGRPNNLEYLDLSSNSLEG------ELPKSLG--NLKN 389
F D + +L LD S N +E PKSL NL N
Sbjct: 510 --LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 18/178 (10%)
Query: 248 CQLQGIP-LSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNF--FTGHIP 304
CQL+ P L LPF+ +++ ++ SF P SL+ L L N F+G
Sbjct: 317 CQLKQFPTLDLPFLKSLTLT-MNKGSISFKKVALP------SLSYLDLSRNALSFSGCCS 369
Query: 305 NEFANLKLLEVLDLSNNLDLGGQLPKL-FGILRRLKSLDLSANNLNGEVHEFFDGFSGRP 363
L LDLS N G + F L L+ LD + L V EF S
Sbjct: 370 YSDLGTNSLRHLDLSFN---GAIIMSANFMGLEELQHLDFQHSTLK-RVTEFSAFLSLEK 425
Query: 364 NNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRKLDLS 420
L YLD+S + + + L +L L+++GNSF + S++ N ++L LDLS
Sbjct: 426 --LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 361 GRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLS 420
G P+N YL+L N+++ + +L +L+ L+L NS + L+SL L+L
Sbjct: 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131
Query: 421 YNGMNGTIPESFGKLSELVDANLLQNSWEGI-------LQESQFMNLKRLESFRLTTEPT 473
N + +F LS+L + L N E I + ++L L+ +E
Sbjct: 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191
Query: 474 KKFVFNVSY 482
+ +FN+ Y
Sbjct: 192 FEGLFNLKY 200
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 360 SGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSI-GNLSSLRKLD 418
+G P + + L L++N + P +L NLQ L + N +IP+ + L+ L +LD
Sbjct: 29 AGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLD 87
Query: 419 LSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFM 458
L+ N + +F L L L N W+ ++ ++
Sbjct: 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYL 127
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 94/220 (42%), Gaps = 21/220 (9%)
Query: 219 GFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSA 278
F L H+G+ + P L L L C++Q I + + + +S L L+ N S
Sbjct: 38 SFNPLRHLGS---YSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSL 93
Query: 279 IPPWLFSLTSLTKLYLRW-------NFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL 331
L+SL KL NF GH LK L+ L++++NL +LP+
Sbjct: 94 ALGAFSGLSSLQKLVALETNLASLENFPIGH-------LKTLKELNVAHNLIQSFKLPEY 146
Query: 332 FGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQ 391
F L L+ LDLS+N + P LDLS N + P + ++ L+
Sbjct: 147 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LK 205
Query: 392 YLRLSGNSFWGSIPSSI-GNLSSLRKLDLSYNGMNGTIPE 430
L L N S+P I L+SL+K+ L N + + P
Sbjct: 206 ELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 244
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 778 LVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSID------LSWNNLTGQIPDEIGNLS 831
+V +S+ QL W + N + NI A++ D L+ N+LT ++P EI NLS
Sbjct: 213 MVMPKDSKYDDQL-WHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLS 270
Query: 832 ALHILNLSHNQLS 844
L +L+LSHN+L+
Sbjct: 271 NLRVLDLSHNRLT 283
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 283 LFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLD 342
+F LT+LYL N T +P E NL L VLDLS+N LP G +LK
Sbjct: 243 IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN--RLTSLPAELGSCFQLKYFY 299
Query: 343 LSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSL 384
N + EF G NL++L + N LE + K L
Sbjct: 300 FFDNMVTTLPWEF-----GNLCNLQFLGVEGNPLEKQFLKIL 336
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 51/122 (41%), Gaps = 36/122 (29%)
Query: 365 NLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYN-- 422
NL+ ++S+N + + L L L+GNS +P+ I NLS+LR LDLS+N
Sbjct: 233 NLQIFNISANIFKYDF---------LTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRL 282
Query: 423 --------------------GMNGTIPESFGKLSEL----VDANLLQNSWEGILQESQFM 458
M T+P FG L L V+ N L+ + IL E
Sbjct: 283 TSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT 342
Query: 459 NL 460
L
Sbjct: 343 GL 344
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 723 ISENLSSF-FMLRLRSNLLS-GDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVY 780
IS N+ + F+ RL N S ++P + NL NL ++DLSHN + ++P +G+ L Y
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKY 297
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 538 SEITYLILSNNQIK-----GKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDN 592
+E+ LIL NQ+K ++ QM S L+ +D+S N + + L N
Sbjct: 348 TELETLILQMNQLKELSKIAEMTTQMKS--LQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405
Query: 593 RFSGPLPENI-GSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSG 645
S L + I L PR++ L L N++ IP V LE LQ L++ SN+L
Sbjct: 406 MSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS 458
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 101/232 (43%), Gaps = 38/232 (16%)
Query: 337 RLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLS 396
R++ LD+S N E LEYLDLS N L + S NL++L LS
Sbjct: 56 RIQYLDISVFKFNQE--------------LEYLDLSHNKL---VKISCHPTVNLKHLDLS 98
Query: 397 GNSFWG-SIPSSIGNLSSLRKLDLSYNGM--NGTIPESFGKLSELVDANLLQNSWEGILQ 453
N+F I GN+S L+ L LS + + +P + +S+++ L+ G +
Sbjct: 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL---LVLGETYGEKE 155
Query: 454 ESQFMNLKRLESFRLTTEPTKK---FVFNVSYNWVPPFRLKSIQI----ENCQVGPSFPV 506
+ + + ES + PT K F+ +VS V L +I+ C S
Sbjct: 156 DPEGLQDFNTESLHIVF-PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA 214
Query: 507 WLQVQTELTSVILRNVGISDTIPGDWFSKLS----SEITYLILSNNQIKGKL 554
LQ +L+++ L N+ +T + L + + Y +SN +++G+L
Sbjct: 215 KLQTNPKLSNLTLNNI---ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL 263
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 10/129 (7%)
Query: 250 LQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLT-SLTKLYLRWNFFTGHIPNEFA 308
++ +P +L +F + +L+L++ I + F+ ++ KLY+ +N P+ F
Sbjct: 63 MRKLPAAL-LDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120
Query: 309 NLKLLEVLDLSNNLDLGGQLPK-LFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLE 367
N+ LL VL L N DL LP+ +F +L +L +S NNL + F + L+
Sbjct: 121 NVPLLTVLVLERN-DLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS----LQ 174
Query: 368 YLDLSSNSL 376
L LSSN L
Sbjct: 175 NLQLSSNRL 183
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Query: 263 TSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNN- 321
+++L L N+ WL + L ++ L +N + + F ++ LE L +SNN
Sbjct: 232 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289
Query: 322 ---LDLGGQ-LPKLFGILRRLKSLDLSANNL 348
L+L GQ +P LK LDLS N+L
Sbjct: 290 LVALNLYGQPIPT-------LKVLDLSHNHL 313
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 109/241 (45%), Gaps = 38/241 (15%)
Query: 250 LQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLT-SLTKLYLRWNFFTGHIPNEFA 308
++ +P +L +F + +L+L++ I + F+ ++ KLY+ +N P+ F
Sbjct: 57 MRKLPAAL-LDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114
Query: 309 NLKLLEVLDLSNNLDLGGQLPK-LFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLE 367
N+ LL VL L N DL LP+ +F +L +L +S NNL + F + L+
Sbjct: 115 NVPLLTVLVLERN-DLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS----LQ 168
Query: 368 YLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGT 427
L LSSN L L + +L + +S N + S++ ++ +LD S+N +N
Sbjct: 169 NLQLSSNRLTH---VDLSLIPSLFHANVSYN-----LLSTLAIPIAVEELDASHNSINVV 220
Query: 428 -----IPESFGKLSE--------------LVDANLLQNSWEGILQESQFMNLKRLESFRL 468
+ + KL LV+ +L N E I+ F+ ++RLE +
Sbjct: 221 RGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYI 279
Query: 469 T 469
+
Sbjct: 280 S 280
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Query: 263 TSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNN- 321
+++L L N+ WL + L ++ L +N + + F ++ LE L +SNN
Sbjct: 226 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283
Query: 322 ---LDLGGQ-LPKLFGILRRLKSLDLSANNL 348
L+L GQ +P LK LDLS N+L
Sbjct: 284 LVALNLYGQPIPT-------LKVLDLSHNHL 307
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 146/383 (38%), Gaps = 62/383 (16%)
Query: 150 FGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQX------ 203
F L +LRYL+L +++ P LS+L+YL L +F+ S SLA H
Sbjct: 268 FSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL-KRAFTKQSVSLASHPNIDDFSFQ 326
Query: 204 ---------XXXXXXXXXXXXXXXGFVKLDHVG-ADWLQAVNMLPSLVELRLHYCQLQGI 253
G V L ++ + ++ L + + L + L +
Sbjct: 327 WLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTL 386
Query: 254 PLSLPFIN---------FTSISVLDLSENSFNSAIP--PWLFSLTSLTKLYLRWNFFTGH 302
L+ I+ + +LDL N + W L ++ ++YL +N +
Sbjct: 387 NLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWR-GLRNIFEIYLSYNKYLQL 445
Query: 303 IPNEFANLKLLEVLDLS----NNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDG 358
+ FA + L+ L L N+D+ P F LR L LDLS NN+ + +G
Sbjct: 446 STSSFALVPSLQRLMLRRVALKNVDIS---PSPFRPLRNLTILDLSNNNIANINEDLLEG 502
Query: 359 FSGRPNNLEYLDLSSNSLEGELPKS--------LGNLKNLQYLRLSGNSFWGSIPSSI-G 409
NLE LD N+L ++ L L +L L L N IP +
Sbjct: 503 LE----NLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGL-DEIPVGVFK 557
Query: 410 NLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQN---SWEGILQESQFMNLK----R 462
NL L+ ++L N +N P F + L NL +N S E + F NL R
Sbjct: 558 NLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEKDVFGPPFQNLNSLDMR 617
Query: 463 LESFRLTTEPTKKFVFNVSYNWV 485
F T E FV NW+
Sbjct: 618 FNPFDCTCESISWFV-----NWI 635
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 111/433 (25%), Positives = 168/433 (38%), Gaps = 65/433 (15%)
Query: 265 ISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDL 324
+ VL+L N + T+LT+L L N N F N K L LDLS+N
Sbjct: 75 LKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN--- 131
Query: 325 GGQLPKL-FGILRRLKSLDLSANN----LNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGE 379
G KL G+ L A N L E EF S R LDLSSN L+
Sbjct: 132 GLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRK-----LDLSSNPLKEF 186
Query: 380 LP---KSLGNL------------------------KNLQYLRLSGNSFWGSIPSSIGNL- 411
P +++G L ++Q L L+ N + S+ L
Sbjct: 187 SPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLK 246
Query: 412 -SSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGI-------LQESQFMNLKRL 463
++L +LDLSYN ++ SF L L +L N+ + + L ++++LKR
Sbjct: 247 WTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRA 306
Query: 464 ---ESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILR 520
+S L + P + + S+ W+ ++ N S V + S+
Sbjct: 307 FTKQSVSLASHPN---IDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKT 363
Query: 521 NVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNS--PNLRSIDLSSNHFEGTLP 578
+ + S S + L L+ N I K+ S LR +DL N E L
Sbjct: 364 FTSLQTLTNETFVSLAHSPLLTLNLTKNHI-SKIANGTFSWLGQLRILDLGLNEIEQKLS 422
Query: 579 --LWS--TNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGR--IPSSVCNLED 632
W N E++L N++ L + +L+P LQRL L L PS L +
Sbjct: 423 GQEWRGLRNIFEIYLSYNKYLQ-LSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRN 481
Query: 633 LQILSIRSNKLSG 645
L IL + +N ++
Sbjct: 482 LTILDLSNNNIAN 494
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 15/190 (7%)
Query: 288 SLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANN 347
++T++ L N P F+ K L +DLSNN + P F LR L SL L N
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK 91
Query: 348 LNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSS 407
+ F+G L+ L L++N + + +L NL L L N +
Sbjct: 92 ITELPKSLFEGLFS----LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT---IA 144
Query: 408 IGNLSSLRKLDLSYNGMNGTIPESFGK-LSELVDANLLQNSWEGILQESQFMNLKRLESF 466
G S LR + + N I + K L++ + N ++ S ++ + +RL +
Sbjct: 145 KGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSG------ARCTSPRRLANK 198
Query: 467 RLTTEPTKKF 476
R+ +KKF
Sbjct: 199 RIGQIKSKKF 208
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 13/153 (8%)
Query: 250 LQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLYLRWNFFTGHIPNEFA 308
L IP +LP +I+ + L +N+ IPP FS L ++ L N + P+ F
Sbjct: 23 LTEIPTNLP----ETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ 77
Query: 309 NLKLLEVLDLSNNLDLGGQLPK-LFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLE 367
L+ L L L N +LPK LF L L+ L L+AN +N + F +NL
Sbjct: 78 GLRSLNSLVLYGNKI--TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL----HNLN 131
Query: 368 YLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSF 400
L L N L+ + L+ +Q + L+ N F
Sbjct: 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 15/190 (7%)
Query: 288 SLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANN 347
++T++ L N P F+ K L +DLSNN + P F LR L SL L N
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK 91
Query: 348 LNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSS 407
+ F+G L+ L L++N + + +L NL L L N +
Sbjct: 92 ITELPKSLFEGLFS----LQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQT---IA 144
Query: 408 IGNLSSLRKLDLSYNGMNGTIPESFGK-LSELVDANLLQNSWEGILQESQFMNLKRLESF 466
G S LR + + N I + K L++ + N ++ S ++ + +RL +
Sbjct: 145 KGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSG------ARCTSPRRLANK 198
Query: 467 RLTTEPTKKF 476
R+ +KKF
Sbjct: 199 RIGQIKSKKF 208
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 13/153 (8%)
Query: 250 LQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLYLRWNFFTGHIPNEFA 308
L IP +LP +I+ + L +N+ IPP FS L ++ L N + P+ F
Sbjct: 23 LTEIPTNLP----ETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ 77
Query: 309 NLKLLEVLDLSNNLDLGGQLPK-LFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLE 367
L+ L L L N +LPK LF L L+ L L+AN +N + F +NL
Sbjct: 78 GLRSLNSLVLYGNKI--TELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDL----HNLN 131
Query: 368 YLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSF 400
L L N L+ + L+ +Q + L+ N F
Sbjct: 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 7/140 (5%)
Query: 303 IPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGR 362
+P+ LE L L+ N LP L RL+ L + A E+ E
Sbjct: 119 LPDTXQQFAGLETLTLARNPLRA--LPASIASLNRLRELSIRACPELTELPEPLASTDAS 176
Query: 363 PNNLEYLDLSSNSLE----GELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLD 418
+ ++L S LE LP S+ NL+NL+ L++ NS ++ +I +L L +LD
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIR-NSPLSALGPAIHHLPKLEELD 235
Query: 419 LSYNGMNGTIPESFGKLSEL 438
L P FG + L
Sbjct: 236 LRGCTALRNYPPIFGGRAPL 255
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 2/117 (1%)
Query: 609 LQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLT 668
LQ L L W + +P+S+ NL++L+ L IR++ LS P +H +D+ +
Sbjct: 185 LQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTAL 242
Query: 669 GSIPXXXXXXXXXXXXXXXXXXXXXXIPCSLQNCTGLTSIDLGGNQLSGSLPLWISE 725
+ P +P + T L +DL G LP I++
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 250 LQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS-LTSLTKLYLRWNFFTGHIPNEFA 308
L+ IP +P + L L++N LF L L KL L+ N TG PN F
Sbjct: 20 LKEIPRDIPL----HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE 75
Query: 309 NLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEY 368
++ L L N + K+F L +LK+L+L N ++ + F+ N+L
Sbjct: 76 GASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL----NSLTS 130
Query: 369 LDLSSN 374
L+L+SN
Sbjct: 131 LNLASN 136
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 577 LPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQIL 636
+PL +T EL L DN + + +P L +L L NQL+G P++ +Q L
Sbjct: 27 IPLHTT---ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83
Query: 637 SIRSNKLSGEFPNCWYHSQMFWGI 660
+ NK+ E N +MF G+
Sbjct: 84 QLGENKIK-EISN-----KMFLGL 101
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 239 SLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLF-SLTSLTKLYLRWN 297
S L L +LQ +P + F T ++ L LS+N S +P +F LT LT LYL N
Sbjct: 29 SATRLELESNKLQSLPHGV-FDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHEN 86
Query: 298 FFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKL-FGILRRLKSL 341
F L L+ L L N QL + GI RL SL
Sbjct: 87 KLQSLPNGVFDKLTQLKELALDTN-----QLKSVPDGIFDRLTSL 126
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 114/260 (43%), Gaps = 23/260 (8%)
Query: 392 YLRLSGNSFWG--SIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWE 449
+LR+ S G ++P I ++L LDL N ++ + F L L L+ N
Sbjct: 34 HLRVVQCSDLGLKAVPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 450 GILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQ 509
I E F L++L+ ++ + N+ + V R+ +I G +
Sbjct: 92 KI-HEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVE-LRIHDNRIRKVPKGVFSGLRNM 149
Query: 510 VQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKG---KLPRQMNSPNLRSI 566
E+ L N G PG F L ++ YL +S ++ G LP +N +L
Sbjct: 150 NCIEMGGNPLENSGFE---PG-AFDGL--KLNYLRISEAKLTGIPKDLPETLNELHLDHN 203
Query: 567 DLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSL--MPRLQRLYLSWNQLSGRIP 624
+ + E L + L L N+ + EN GSL +P L+ L+L N+LS R+P
Sbjct: 204 KIQAIELEDLL--RYSKLYRLGLGHNQIR--MIEN-GSLSFLPTLRELHLDNNKLS-RVP 257
Query: 625 SSVCNLEDLQILSIRSNKLS 644
+ + +L+ LQ++ + +N ++
Sbjct: 258 AGLPDLKLLQVVYLHTNNIT 277
>pdb|3B9N|A Chain A, Crystal Structure Of Long-Chain Alkane Monooxygenase
(Lada)
pdb|3B9N|B Chain B, Crystal Structure Of Long-Chain Alkane Monooxygenase
(Lada)
pdb|3B9O|A Chain A, Long-Chain Alkane Monooxygenase (Lada) In Complex With
Coenzyme Fmn
pdb|3B9O|B Chain B, Long-Chain Alkane Monooxygenase (Lada) In Complex With
Coenzyme Fmn
Length = 440
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 285 SLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQ 327
+L LTK + WN T H+P+ N + ++L+ DL +
Sbjct: 121 TLDHLTKGRIAWNVVTSHLPSADKNFGIKKILEHDERYDLADE 163
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 283 LFSLTSLTKLYLRWNF--FTGHIPNEFANLKLLEVLDLSNNLDLGGQLPK-LFGILRRLK 339
L + +L+ L LR N H+ ++ NL+ +E SN L Q+P+ +FG + +LK
Sbjct: 143 LTDMRNLSHLELRANIEEMPSHLFDDLENLESIEFG--SNKLR---QMPRGIFGKMPKLK 197
Query: 340 SLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPK 382
L+L++N L DG R +L+ + L +N + P+
Sbjct: 198 QLNLASNQLKS----VPDGIFDRLTSLQKIWLHTNPWDCSCPR 236
>pdb|3KHK|A Chain A, Crystal Structure Of Type-I Restriction-Modification
System Methylation Subunit (Mm_0429) From
Methanosarchina Mazei.
pdb|3KHK|B Chain B, Crystal Structure Of Type-I Restriction-Modification
System Methylation Subunit (Mm_0429) From
Methanosarchina Mazei
Length = 544
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 323 DLGGQLPKLFGILRRLKSLDLSANNLNGEVHEF-FDGFSGRPNNLEYLDLSSNSLEGEL 380
D+ PKL GIL R+ L A+ L G ++EF F+ N E L+L S + G +
Sbjct: 150 DIEKANPKLKGILNRISQYQLDADKLIGLINEFSLTSFNNPEYNGEKLNLKSKDILGHV 208
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Query: 533 FSKLSSEITYLILSNNQIKG--KLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQ 590
+L +T+L +S N G +LP PNL ++ SSN L + +EL +
Sbjct: 272 LPELPQSLTFLDVSENIFSGLSELP-----PNLYYLNASSNEIRSLCDLPPS-LEELNVS 325
Query: 591 DNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQI 635
+N+ + +L PRL+RL S+N L +P NL+ L +
Sbjct: 326 NNKLIE-----LPALPPRLERLIASFNHL-AEVPELPQNLKQLHV 364
>pdb|2Y3C|A Chain A, Treponema Denticola Variable Protein 1
Length = 294
Score = 29.6 bits (65), Expect = 6.9, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 759 LSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSN 804
L HN++S P + +LSA + G +EV Q+L W+ V G NP + N
Sbjct: 42 LGHNDYSINQPHTV-SLSAYLIGE-TEVTQEL-WQAVMGNNPSHFN 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,774,036
Number of Sequences: 62578
Number of extensions: 1031700
Number of successful extensions: 3160
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 2043
Number of HSP's gapped (non-prelim): 619
length of query: 906
length of database: 14,973,337
effective HSP length: 108
effective length of query: 798
effective length of database: 8,214,913
effective search space: 6555500574
effective search space used: 6555500574
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)