Query 002574
Match_columns 906
No_of_seqs 764 out of 4974
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 02:45:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.5E-69 5.3E-74 673.1 46.5 585 47-899 28-620 (968)
2 PLN00113 leucine-rich repeat r 100.0 2E-54 4.4E-59 539.2 36.5 512 264-892 70-587 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 9E-39 1.9E-43 320.2 -15.3 483 130-778 46-530 (565)
4 KOG4194 Membrane glycoprotein 100.0 2.2E-35 4.7E-40 308.8 7.4 370 264-764 79-451 (873)
5 KOG4194 Membrane glycoprotein 100.0 3.7E-35 8E-40 307.0 8.5 392 340-864 56-448 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 2.6E-38 5.6E-43 316.9 -16.4 494 239-874 46-545 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.8E-34 3.8E-39 318.4 -2.4 487 240-874 23-515 (1081)
8 KOG0618 Serine/threonine phosp 100.0 6.2E-34 1.3E-38 314.1 -6.2 416 365-866 69-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1E-31 2.2E-36 282.8 -3.6 240 597-874 164-410 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 3.9E-31 8.5E-36 278.3 -1.0 370 126-692 4-375 (1255)
11 PLN03210 Resistant to P. syrin 99.9 4.2E-21 9E-26 239.6 27.5 346 329-763 551-904 (1153)
12 KOG4237 Extracellular matrix p 99.9 5.1E-24 1.1E-28 214.5 -0.0 417 287-865 67-498 (498)
13 PLN03210 Resistant to P. syrin 99.9 1.6E-20 3.5E-25 234.3 26.3 338 304-714 551-904 (1153)
14 KOG4237 Extracellular matrix p 99.8 1.4E-22 3E-27 204.3 1.3 264 239-536 68-370 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 1.1E-20 2.3E-25 217.9 16.8 241 562-873 223-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 3.1E-20 6.6E-25 214.1 17.4 265 515-854 204-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 9.8E-19 2.1E-23 203.4 12.9 203 538-765 178-380 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.9E-18 4.2E-23 201.0 11.5 281 514-859 180-461 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.2E-18 4.9E-23 187.3 3.3 269 133-426 2-292 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 8.8E-18 1.9E-22 182.7 2.0 115 651-765 77-206 (319)
21 KOG0617 Ras suppressor protein 99.6 2.7E-18 5.8E-23 153.5 -6.0 179 657-873 35-217 (264)
22 KOG0617 Ras suppressor protein 99.6 1.2E-17 2.6E-22 149.4 -3.4 183 629-849 31-217 (264)
23 PLN03150 hypothetical protein; 99.4 4.5E-13 9.7E-18 156.2 12.9 129 44-192 368-504 (623)
24 PLN03150 hypothetical protein; 99.3 2.7E-12 5.8E-17 149.8 8.6 115 754-900 420-539 (623)
25 KOG0532 Leucine-rich repeat (L 99.3 1.4E-13 3.1E-18 146.1 -4.8 202 630-874 74-278 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 5E-13 1.1E-17 142.0 -3.6 146 624-778 91-236 (722)
27 COG4886 Leucine-rich repeat (L 99.2 2E-11 4.4E-16 136.5 7.6 152 680-870 141-292 (394)
28 KOG1909 Ran GTPase-activating 99.1 7.2E-12 1.6E-16 126.1 -1.4 116 284-400 182-310 (382)
29 COG4886 Leucine-rich repeat (L 99.1 8.9E-11 1.9E-15 131.4 6.9 183 628-850 113-296 (394)
30 KOG1909 Ran GTPase-activating 99.1 1E-11 2.3E-16 124.9 -1.8 265 120-424 21-310 (382)
31 KOG3207 Beta-tubulin folding c 98.9 2.1E-10 4.6E-15 118.8 1.4 208 236-449 119-339 (505)
32 KOG3207 Beta-tubulin folding c 98.9 3.2E-10 7E-15 117.4 2.5 142 207-349 142-284 (505)
33 KOG1259 Nischarin, modulator o 98.9 2.9E-10 6.4E-15 111.6 2.1 136 698-871 279-415 (490)
34 PF14580 LRR_9: Leucine-rich r 98.9 1.1E-09 2.5E-14 104.1 4.0 82 630-716 18-101 (175)
35 KOG1259 Nischarin, modulator o 98.9 4.8E-10 1E-14 110.1 1.4 131 334-474 282-412 (490)
36 PF14580 LRR_9: Leucine-rich r 98.9 2.7E-09 5.9E-14 101.5 5.8 104 209-321 17-123 (175)
37 KOG4658 Apoptotic ATPase [Sign 98.8 7.5E-09 1.6E-13 123.4 6.2 162 124-301 566-731 (889)
38 PF13855 LRR_8: Leucine rich r 98.7 6.9E-09 1.5E-13 81.0 3.5 61 807-867 1-61 (61)
39 PF08263 LRRNT_2: Leucine rich 98.7 3E-08 6.6E-13 70.5 4.5 38 47-84 2-43 (43)
40 KOG0531 Protein phosphatase 1, 98.6 4.5E-09 9.7E-14 117.6 -0.6 247 152-452 70-321 (414)
41 KOG0531 Protein phosphatase 1, 98.6 4.2E-09 9.2E-14 117.8 -0.9 222 606-872 94-322 (414)
42 PF13855 LRR_8: Leucine rich r 98.6 5.7E-08 1.2E-12 75.8 3.7 58 657-714 3-60 (61)
43 KOG4658 Apoptotic ATPase [Sign 98.5 7.4E-08 1.6E-12 115.1 6.3 79 365-444 572-650 (889)
44 KOG2120 SCF ubiquitin ligase, 98.5 1.6E-09 3.5E-14 106.6 -6.3 59 130-188 186-244 (419)
45 KOG2120 SCF ubiquitin ligase, 98.3 1.9E-08 4.2E-13 99.2 -6.5 181 263-447 185-374 (419)
46 KOG1859 Leucine-rich repeat pr 98.2 1.7E-08 3.8E-13 110.7 -8.0 126 704-868 165-292 (1096)
47 KOG2982 Uncharacterized conser 98.2 6.5E-07 1.4E-11 88.6 2.1 62 260-321 94-156 (418)
48 COG5238 RNA1 Ran GTPase-activa 98.2 2.2E-07 4.8E-12 90.6 -1.4 37 127-163 28-67 (388)
49 KOG1859 Leucine-rich repeat pr 98.1 1.3E-07 2.8E-12 104.2 -5.8 58 390-449 234-292 (1096)
50 KOG4579 Leucine-rich repeat (L 98.1 3.9E-07 8.5E-12 79.7 -1.7 56 810-867 80-135 (177)
51 KOG4579 Leucine-rich repeat (L 98.1 3.6E-07 7.9E-12 79.9 -2.1 66 810-877 103-169 (177)
52 COG5238 RNA1 Ran GTPase-activa 98.0 2.3E-06 5E-11 83.7 2.6 93 207-299 26-132 (388)
53 KOG2982 Uncharacterized conser 97.9 2.4E-06 5.1E-11 84.7 0.4 87 127-221 69-156 (418)
54 KOG4341 F-box protein containi 97.9 7.6E-07 1.7E-11 92.4 -4.6 283 130-424 139-438 (483)
55 KOG4341 F-box protein containi 97.8 2.1E-06 4.6E-11 89.2 -3.1 279 154-448 138-438 (483)
56 KOG3665 ZYG-1-like serine/thre 97.7 1.5E-05 3.2E-10 93.1 3.2 107 211-321 122-230 (699)
57 PRK15386 type III secretion pr 97.7 5.8E-05 1.3E-09 81.0 7.3 162 652-867 49-218 (426)
58 PF12799 LRR_4: Leucine Rich r 97.7 2.8E-05 6.1E-10 55.3 3.1 37 808-845 2-38 (44)
59 PF12799 LRR_4: Leucine Rich r 97.6 4.6E-05 1E-09 54.2 3.0 37 831-868 1-37 (44)
60 PRK15386 type III secretion pr 97.6 0.0002 4.4E-09 76.9 8.5 14 752-765 156-169 (426)
61 KOG3665 ZYG-1-like serine/thre 97.5 3.1E-05 6.8E-10 90.5 1.8 150 311-465 122-279 (699)
62 KOG1644 U2-associated snRNP A' 97.3 0.00036 7.8E-09 66.0 5.1 83 389-473 43-125 (233)
63 KOG2739 Leucine-rich acidic nu 97.2 0.00028 6.1E-09 69.7 4.2 122 119-251 33-156 (260)
64 KOG1644 U2-associated snRNP A' 97.1 0.00047 1E-08 65.2 4.0 84 130-224 43-126 (233)
65 PF13306 LRR_5: Leucine rich r 96.9 0.0021 4.6E-08 58.9 6.7 105 627-737 8-112 (129)
66 PF13306 LRR_5: Leucine rich r 96.9 0.002 4.4E-08 59.0 6.4 108 600-712 5-112 (129)
67 KOG2739 Leucine-rich acidic nu 96.5 0.0017 3.7E-08 64.4 2.5 83 653-735 63-150 (260)
68 KOG2123 Uncharacterized conser 96.3 0.00031 6.8E-09 69.4 -3.7 105 127-244 17-123 (388)
69 KOG2123 Uncharacterized conser 96.1 0.00032 6.9E-09 69.4 -4.3 79 236-317 39-123 (388)
70 KOG1947 Leucine rich repeat pr 96.1 0.00065 1.4E-08 78.4 -2.9 10 414-423 403-412 (482)
71 KOG1947 Leucine rich repeat pr 95.8 0.0027 5.9E-08 73.3 0.2 36 237-272 187-223 (482)
72 PF00560 LRR_1: Leucine Rich R 95.2 0.0085 1.9E-07 35.3 0.8 18 833-851 2-19 (22)
73 PF00560 LRR_1: Leucine Rich R 94.9 0.011 2.4E-07 34.8 0.8 22 808-830 1-22 (22)
74 KOG4308 LRR-containing protein 93.3 0.00078 1.7E-08 75.6 -11.8 39 388-426 262-304 (478)
75 KOG4308 LRR-containing protein 92.9 0.0011 2.4E-08 74.4 -11.3 238 631-868 144-445 (478)
76 KOG0473 Leucine-rich repeat pr 90.2 0.015 3.3E-07 56.3 -4.9 89 746-868 36-124 (326)
77 KOG0473 Leucine-rich repeat pr 89.8 0.017 3.7E-07 56.0 -5.0 82 88-190 42-123 (326)
78 PF13504 LRR_7: Leucine rich r 89.0 0.27 5.9E-06 26.8 1.4 11 705-715 3-13 (17)
79 KOG3864 Uncharacterized conser 87.7 0.14 3E-06 49.1 -0.5 83 264-346 102-186 (221)
80 smart00369 LRR_TYP Leucine-ric 85.4 0.79 1.7E-05 28.1 2.2 21 703-724 2-22 (26)
81 smart00370 LRR Leucine-rich re 85.4 0.79 1.7E-05 28.1 2.2 21 703-724 2-22 (26)
82 KOG3864 Uncharacterized conser 84.5 0.21 4.5E-06 48.0 -1.1 34 364-397 151-185 (221)
83 smart00370 LRR Leucine-rich re 83.3 0.89 1.9E-05 27.9 1.8 14 831-844 2-15 (26)
84 smart00369 LRR_TYP Leucine-ric 83.3 0.89 1.9E-05 27.9 1.8 14 831-844 2-15 (26)
85 PF13516 LRR_6: Leucine Rich r 79.0 0.71 1.5E-05 27.7 0.2 13 809-821 4-16 (24)
86 KOG4242 Predicted myosin-I-bin 69.2 27 0.00059 38.4 9.1 258 154-425 165-453 (553)
87 smart00365 LRR_SD22 Leucine-ri 68.1 4.2 9.1E-05 25.0 1.7 15 830-844 1-15 (26)
88 smart00364 LRR_BAC Leucine-ric 56.2 8.2 0.00018 23.7 1.4 17 365-382 3-19 (26)
89 smart00368 LRR_RI Leucine rich 53.6 9.9 0.00022 23.8 1.6 14 831-844 2-15 (28)
90 KOG4242 Predicted myosin-I-bin 52.7 69 0.0015 35.5 8.6 59 809-867 415-480 (553)
91 smart00367 LRR_CC Leucine-rich 43.0 14 0.00031 22.5 1.1 15 311-325 2-16 (26)
92 KOG3763 mRNA export factor TAP 30.5 30 0.00065 39.0 1.9 65 805-871 216-286 (585)
93 KOG3763 mRNA export factor TAP 28.5 28 0.00061 39.2 1.3 12 414-425 272-283 (585)
94 TIGR00864 PCC polycystin catio 23.5 45 0.00097 45.4 2.0 32 813-844 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.5e-69 Score=673.05 Aligned_cols=585 Identities=37% Similarity=0.574 Sum_probs=420.8
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCC-CCCCCCCccceEecCCCCcEEEEecCCcccccCCCcCCCcCCCCccccccccccc
Q 002574 47 DAEREGLLAFKESLTDPSGRLSSW-VGQDCCKWNGVYCNNQSGHVTQLNLRNPYQLINGGVGDSTAYKGSCLGGKINPSL 125 (906)
Q Consensus 47 ~~~~~~ll~~k~~~~~~~~~l~~W-~~~~~c~w~gv~C~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 125 (906)
++|++||++||+++.+|.+.+.+| ...+||.|.||+|+. .++|+.|+|+++ .+.|.+++.+
T Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~-----------------~i~~~~~~~~ 89 (968)
T PLN00113 28 AEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGK-----------------NISGKISSAI 89 (968)
T ss_pred HHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCC-----------------CccccCChHH
Confidence 479999999999998888888999 467899999999975 579999999987 7788888889
Q ss_pred cCCCCCCEEeCCCCCCCCCCCChhhh-cCCCCCeeeccCCcCccCCCcCcCCCCCCcEEEccCCCCCCCcCCccccccch
Q 002574 126 LHLKYLDTLDLSLNDFEGAEIPEYFG-QLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNL 204 (906)
Q Consensus 126 ~~l~~L~~L~Ls~n~~~~~~lp~~l~-~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~ 204 (906)
..+++|++|+|++|.+.+. +|..+. .+++|++|++++|++++.+|. +.+++|++|++++|.+.+
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~------------ 154 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSG------------ 154 (968)
T ss_pred hCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccc------------
Confidence 9999999999999998876 777655 888899999888888877664 334444444444333211
Q ss_pred hhhcCCCCCcEEECCCccCCCCCcchHHHhcCCCCCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCCChhhhh
Q 002574 205 NWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLF 284 (906)
Q Consensus 205 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~ 284 (906)
..+ ..+.++++|++|++++|.+.+.+|..++
T Consensus 155 ------------------------------------------------~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 185 (968)
T PLN00113 155 ------------------------------------------------EIP-NDIGSFSSLKVLDLGGNVLVGKIPNSLT 185 (968)
T ss_pred ------------------------------------------------cCC-hHHhcCCCCCEEECccCcccccCChhhh
Confidence 111 1244455566666666666555666666
Q ss_pred cCCCCCEEEeecccccccCchhhcCCCCCCeEeCCCCCCCCCCcchhhhcCCCCCEEEccCCcCCcccccccccCCCCCC
Q 002574 285 SLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPN 364 (906)
Q Consensus 285 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~ 364 (906)
++++|++|++++|.+.+.+|..++++++|++|++++| .+.+.+|..++.+++|++|++++|.+++..|..+..+.
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~---- 260 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN-NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK---- 260 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC-ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC----
Confidence 6666666666666665555555555666666666555 55555555555555555555555555544444444444
Q ss_pred CccEEECcCCCCCCccchhccCCCCCceeeccCccccCCCCccCCCCCCCCEEeCcCccCCcccccchhccccCceeecC
Q 002574 365 NLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLL 444 (906)
Q Consensus 365 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 444 (906)
+|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+++
T Consensus 261 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 340 (968)
T PLN00113 261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340 (968)
T ss_pred CCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECc
Confidence 45555555555444444444444444444444444444444444444444444444444444444433333333333333
Q ss_pred CCCccCCCChHHhhccccccEeecCCCCCcceeeeccCCCcCCCCccEEEeecccCCCCCChhcccCCcccEEEccCCCc
Q 002574 445 QNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGI 524 (906)
Q Consensus 445 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 524 (906)
+|.+.+.+|.
T Consensus 341 ~n~l~~~~p~---------------------------------------------------------------------- 350 (968)
T PLN00113 341 SNKFSGEIPK---------------------------------------------------------------------- 350 (968)
T ss_pred CCCCcCcCCh----------------------------------------------------------------------
Confidence 3332222111
Q ss_pred cCCCChhhhhhcCCCccEEEccCCcccCCCCCCCCCCCccEEeccCccCcccCCCCcccccccccccccCCCCCCchhhc
Q 002574 525 SDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGS 604 (906)
Q Consensus 525 ~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 604 (906)
.+.
T Consensus 351 ----------------------------------------------------------------------------~l~- 353 (968)
T PLN00113 351 ----------------------------------------------------------------------------NLG- 353 (968)
T ss_pred ----------------------------------------------------------------------------HHh-
Confidence 111
Q ss_pred ccccceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEE
Q 002574 605 LMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVL 684 (906)
Q Consensus 605 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 684 (906)
.+++|+.|++++|.+++.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..|..++.|+.|
T Consensus 354 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 433 (968)
T PLN00113 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433 (968)
T ss_pred CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEE
Confidence 12334444444455555555666667788888888888888888888888888888888888888888888888899999
Q ss_pred ECcCCccccccccccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcC
Q 002574 685 LLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNF 764 (906)
Q Consensus 685 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 764 (906)
++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+. .++|+.|++++|++.+.+|..+..+++|+.|++++|++
T Consensus 434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~--~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 511 (968)
T PLN00113 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511 (968)
T ss_pred ECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc--cccceEEECcCCccCCccChhhhhhhccCEEECcCCcc
Confidence 9999998888888888889999999999999888887654 68999999999999999999999999999999999999
Q ss_pred CCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCCCEEeCcCCccc
Q 002574 765 SGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLS 844 (906)
Q Consensus 765 ~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 844 (906)
++.+|..++++++| +.|+|++|.+++.+|..++++++|+.|||++|+++
T Consensus 512 ~~~~p~~~~~l~~L-------------------------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 512 SGEIPDELSSCKKL-------------------------------VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560 (968)
T ss_pred eeeCChHHcCccCC-------------------------------CEEECCCCcccccCChhHhCcccCCEEECCCCccc
Confidence 99999999888888 89999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCeEeCcCCcccccCCCC---CCCCCCCccCCCCCCCCCCC---CCCCC
Q 002574 845 GAIPQSLSSLASLSKLNLSFNNLAGKIPSL---PNFNDPSIYEGNPLLCGAPL---PTKCP 899 (906)
Q Consensus 845 ~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~---~~~~~~~~~~gn~~lc~~~l---~~~c~ 899 (906)
+.+|..+.++++|++|++++|+++|.+|.. .+|...+ |.|||++||.+. ..+|.
T Consensus 561 ~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~-~~~n~~lc~~~~~~~~~~c~ 620 (968)
T PLN00113 561 GEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASA-VAGNIDLCGGDTTSGLPPCK 620 (968)
T ss_pred ccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhh-hcCCccccCCccccCCCCCc
Confidence 999999999999999999999999999987 5667777 999999998652 24564
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2e-54 Score=539.16 Aligned_cols=512 Identities=36% Similarity=0.571 Sum_probs=341.2
Q ss_pred cccEEECCCCcCCCCChhhhhcCCCCCEEEeecccccccCchhhc-CCCCCCeEeCCCCCCCCCCcchhhhcCCCCCEEE
Q 002574 264 SISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFA-NLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLD 342 (906)
Q Consensus 264 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~ 342 (906)
+++.|++++|.+.+.++..+..+++|+.|++++|.+.+.+|..+. .+++|++|++++| .+.+.+|. +.+++|++|+
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-ccccccCc--cccCCCCEEE
Confidence 344444444444444444444444444444444444444443322 4444444444444 44433332 2344444444
Q ss_pred ccCCcCCcccccccccCCCCCCCccEEECcCCCCCCccchhccCCCCCceeeccCccccCCCCccCCCCCCCCEEeCcCc
Q 002574 343 LSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYN 422 (906)
Q Consensus 343 Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 422 (906)
+++|.+++..|..+..+. +|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++.+++|++|++++|
T Consensus 147 Ls~n~~~~~~p~~~~~l~----~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFS----SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222 (968)
T ss_pred CcCCcccccCChHHhcCC----CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence 444444444444444333 4444444444444444444444444444444444444444444444444444444444
Q ss_pred cCCcccccchhccccCceeecCCCCccCCCChHHhhccccccEeecCCCCCcceeeeccCCCcCCCCccEEEeecccCCC
Q 002574 423 GMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGP 502 (906)
Q Consensus 423 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 502 (906)
.+.+.+|..++++++|+.|++++|.+.+..|. .+.++++|+.|++++| .+.+
T Consensus 223 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n---------------------------~l~~ 274 (968)
T PLN00113 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQN---------------------------KLSG 274 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCceeccccCh-hHhCCCCCCEEECcCC---------------------------eeec
Confidence 44444444444444444444444444443333 3333333333333332 1112
Q ss_pred CCChhcccCCcccEEEccCCCccCCCChhhhhhcCCCccEEEccCCcccCCCCCCCC-CCCccEEeccCccCcccCCCCc
Q 002574 503 SFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMN-SPNLRSIDLSSNHFEGTLPLWS 581 (906)
Q Consensus 503 ~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~ 581 (906)
.+|.++..+++|++|++ ++|.+.+.+|..+. .++|++|++++
T Consensus 275 ~~p~~l~~l~~L~~L~L--------------------------s~n~l~~~~p~~~~~l~~L~~L~l~~----------- 317 (968)
T PLN00113 275 PIPPSIFSLQKLISLDL--------------------------SDNSLSGEIPELVIQLQNLEILHLFS----------- 317 (968)
T ss_pred cCchhHhhccCcCEEEC--------------------------cCCeeccCCChhHcCCCCCcEEECCC-----------
Confidence 22223333333333333 33333333322211 12333333333
Q ss_pred ccccccccccccCCCCCCchhhcccccceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEe
Q 002574 582 TNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGID 661 (906)
Q Consensus 582 ~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~ 661 (906)
|.+.+.+|..+. .+++|+.|++++|.+.+.+|..++.+++|+.|++++|++++.+|..+..+++|+.|+
T Consensus 318 ----------n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ 386 (968)
T PLN00113 318 ----------NNFTGKIPVALT-SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386 (968)
T ss_pred ----------CccCCcCChhHh-cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEE
Confidence 333334443333 367888899999999989999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccc
Q 002574 662 ISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLS 741 (906)
Q Consensus 662 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~ 741 (906)
+++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+.. +++|+.|++++|++.
T Consensus 387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD-MPSLQMLSLARNKFF 465 (968)
T ss_pred CcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhcc-CCCCcEEECcCceee
Confidence 9999999999999999999999999999999999999999999999999999999999987775 999999999999999
Q ss_pred cccCccccCCCCCCEEeCCCCcCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCcccc
Q 002574 742 GDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTG 821 (906)
Q Consensus 742 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~ 821 (906)
+.+|..+ ..++|+.||+++|++++.+|..+.++++| +.|+|++|++++
T Consensus 466 ~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L-------------------------------~~L~Ls~N~l~~ 513 (968)
T PLN00113 466 GGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL-------------------------------MQLKLSENKLSG 513 (968)
T ss_pred eecCccc-ccccceEEECcCCccCCccChhhhhhhcc-------------------------------CEEECcCCccee
Confidence 9988765 46899999999999999999998888887 799999999999
Q ss_pred cCChhhhccCCCCEEeCcCCcccccccccccCCCCCCeEeCcCCcccccCCCC----CCCCCCCccCCCCCCCCC
Q 002574 822 QIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSL----PNFNDPSIYEGNPLLCGA 892 (906)
Q Consensus 822 ~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~----~~~~~~~~~~gn~~lc~~ 892 (906)
.+|+.++++++|++|+|++|.+++.+|..+..+++|+.|++++|+++|.+|.. ..+.... +.+|+..+..
T Consensus 514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~-ls~N~l~~~~ 587 (968)
T PLN00113 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN-ISHNHLHGSL 587 (968)
T ss_pred eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe-ccCCcceeeC
Confidence 99999999999999999999999999999999999999999999999999976 2333334 6677766533
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=9e-39 Score=320.18 Aligned_cols=483 Identities=27% Similarity=0.375 Sum_probs=278.5
Q ss_pred CCCEEeCCCCCCCCCCCChhhhcCCCCCeeeccCCcCccCCCcCcCCCCCCcEEEccCCCCCCCcCCccccccchhhhcC
Q 002574 130 YLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSG 209 (906)
Q Consensus 130 ~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~l~~ 209 (906)
-|+.|++++|.+.. +-+.+.++..|.+|++++|+++ .+|++++.+.+++.|++++|++...|.. +..
T Consensus 46 ~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~----------i~s 112 (565)
T KOG0472|consen 46 DLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQ----------IGS 112 (565)
T ss_pred chhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHH----------Hhh
Confidence 35555666666552 3444556666666666666665 5566666666666666666655444321 344
Q ss_pred CCCCcEEECCCccCCCCCcchHHHhcCCCCCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCCChhhhhcCCCC
Q 002574 210 LSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSL 289 (906)
Q Consensus 210 l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L 289 (906)
+.+|++++.++|.+...++ .++.+..|+.++..+|+++..|. .+.++.++..+++.+|++....|..+ +++.|
T Consensus 113 ~~~l~~l~~s~n~~~el~~----~i~~~~~l~dl~~~~N~i~slp~--~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L 185 (565)
T KOG0472|consen 113 LISLVKLDCSSNELKELPD----SIGRLLDLEDLDATNNQISSLPE--DMVNLSKLSKLDLEGNKLKALPENHI-AMKRL 185 (565)
T ss_pred hhhhhhhhccccceeecCc----hHHHHhhhhhhhccccccccCch--HHHHHHHHHHhhccccchhhCCHHHH-HHHHH
Confidence 4555555555555554432 44555666667777777776664 36667777777777777765444433 37777
Q ss_pred CEEEeecccccccCchhhcCCCCCCeEeCCCCCCCCCCcchhhhcCCCCCEEEccCCcCCcccccccccCCCCCCCccEE
Q 002574 290 TKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYL 369 (906)
Q Consensus 290 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L 369 (906)
++|+...|.+. .+|+.++.+.+|+.|++..| ++. .+| .|.+|..|++|.++.|.+...+.+....+. ++..|
T Consensus 186 ~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~N-ki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~----~l~vL 257 (565)
T KOG0472|consen 186 KHLDCNSNLLE-TLPPELGGLESLELLYLRRN-KIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLN----SLLVL 257 (565)
T ss_pred Hhcccchhhhh-cCChhhcchhhhHHHHhhhc-ccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccc----cceee
Confidence 77777777654 66777777777777777777 553 334 677777777777777777655555554554 77777
Q ss_pred ECcCCCCCCccchhccCCCCCceeeccCccccCCCCccCCCCCCCCEEeCcCccCCcccccchhccccCceeecCCCCcc
Q 002574 370 DLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWE 449 (906)
Q Consensus 370 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 449 (906)
|+..|+++ +.|+.+..+++|++||+++|.++ .+|..++++ +|+.|.+.+|++.. +...+-+...=+
T Consensus 258 DLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~---------- 323 (565)
T KOG0472|consen 258 DLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQE---------- 323 (565)
T ss_pred eccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHH----------
Confidence 77777777 67777777777777777777776 455567777 77777777776652 222221111000
Q ss_pred CCCChHHhhcccc-ccEeecCCCCCcceeeeccCCCcCCCCccEEEeecccCCCCCChhcccCCcccEEEccCCCccCCC
Q 002574 450 GILQESQFMNLKR-LESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTI 528 (906)
Q Consensus 450 ~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 528 (906)
.+..+.+ .+.=.++.- -++.. -.++.
T Consensus 324 ------vLKyLrs~~~~dglS~s----------------------------e~~~e-------------------~~~t~ 350 (565)
T KOG0472|consen 324 ------VLKYLRSKIKDDGLSQS----------------------------EGGTE-------------------TAMTL 350 (565)
T ss_pred ------HHHHHHHhhccCCCCCC----------------------------ccccc-------------------ccCCC
Confidence 0110000 000000000 00000 00000
Q ss_pred ChhhhhhcCCCccEEEccCCcccCCCCCCCCCCCccEEeccCccCcccCCCCcccccccccccccCCCCCCchhhccccc
Q 002574 529 PGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPR 608 (906)
Q Consensus 529 p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~ 608 (906)
|. +.+|.... ..+.+.|++++-+++ .+|+.+|..- +
T Consensus 351 ~~---------------------~~~~~~~~---------------------~i~tkiL~~s~~qlt-~VPdEVfea~-~ 386 (565)
T KOG0472|consen 351 PS---------------------ESFPDIYA---------------------IITTKILDVSDKQLT-LVPDEVFEAA-K 386 (565)
T ss_pred CC---------------------Ccccchhh---------------------hhhhhhhcccccccc-cCCHHHHHHh-h
Confidence 00 01111111 123344444444444 6777766511 0
Q ss_pred ceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccE-EeCCCCcccccCCcCCCCCCCCCEEECc
Q 002574 609 LQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWG-IDISNNSLTGSIPSSFGSLRSLSVLLLS 687 (906)
Q Consensus 609 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~-L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 687 (906)
-.-....+++.|++. .+|..+..+..+.+ +.+++|.+ +.+|..++.+++|+.|+++
T Consensus 387 ---------------------~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~ 443 (565)
T KOG0472|consen 387 ---------------------SEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLS 443 (565)
T ss_pred ---------------------hcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecc
Confidence 011234444445444 34444433333333 23333333 3556667777777777777
Q ss_pred CCccccccccccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcCCCC
Q 002574 688 NNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGA 767 (906)
Q Consensus 688 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 767 (906)
+|-+. .+|..++.+..|+.|+++.|+|. .+|..+-. +..++.+-.++|++....|..+.++++|.+|||.+|.+. .
T Consensus 444 NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~-lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~ 519 (565)
T KOG0472|consen 444 NNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYE-LQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-Q 519 (565)
T ss_pred cchhh-hcchhhhhhhhhheecccccccc-cchHHHhh-HHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-h
Confidence 77666 67777777777888888888777 77777665 666666666777777666666788888888888888876 7
Q ss_pred CCccccccccc
Q 002574 768 IPRCIGNLSAL 778 (906)
Q Consensus 768 ip~~~~~l~~L 778 (906)
||+.+++++++
T Consensus 520 IPp~LgnmtnL 530 (565)
T KOG0472|consen 520 IPPILGNMTNL 530 (565)
T ss_pred CChhhccccce
Confidence 78788887777
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-35 Score=308.79 Aligned_cols=370 Identities=25% Similarity=0.275 Sum_probs=251.2
Q ss_pred cccEEECCCCcCCCCChhhhhcCCCCCEEEeecccccccCchhhcCCCCCCeEeCCCCCCCCCCcchhhhcCCCCCEEEc
Q 002574 264 SISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDL 343 (906)
Q Consensus 264 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L 343 (906)
.-+.||+++|++...-+..|.++++|+++++.+|.++ .+|...+...+|+.|+|.+| .+...-.+.+..++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhh
Confidence 3456888888888777788888888888888888877 56665555666888888888 777777777777778888888
Q ss_pred cCCcCCcccccccccCCCCCCCccEEECcCCCCCCccchhccCCCCCceeeccCccccCCCCccCCCCCCCCEEeCcCcc
Q 002574 344 SANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNG 423 (906)
Q Consensus 344 s~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 423 (906)
+.|.++.+....|..-. ++++|+|++|.|+..-...|..+.+|.+|.|+.|+++...+..|.++++|+.|+|..|+
T Consensus 157 SrN~is~i~~~sfp~~~----ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKV----NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhchhhcccCCCCCCCC----CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 88877766555554433 67777777777775555566666666666666666665555566666666666666666
Q ss_pred CCcccccchhccccCceeecCCCCccCCCChHHhhccccccEeecCCCCCcceeeeccCCCcCCCCccEEEeecccCCCC
Q 002574 424 MNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPS 503 (906)
Q Consensus 424 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 503 (906)
|...---.|.++++|+.|.+..|.+...-+. .|-.
T Consensus 233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG-~Fy~-------------------------------------------- 267 (873)
T KOG4194|consen 233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDG-AFYG-------------------------------------------- 267 (873)
T ss_pred eeeehhhhhcCchhhhhhhhhhcCcccccCc-ceee--------------------------------------------
Confidence 6422122344444444444444433321111 1111
Q ss_pred CChhcccCCcccEEEccCCCccCCCChhhhhhcCCCccEEEccCCcccCCCCCCCCCCCccEEeccCccCcccCCCCccc
Q 002574 504 FPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTN 583 (906)
Q Consensus 504 ~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 583 (906)
+.++++|+++.|++..
T Consensus 268 ---------------------------------l~kme~l~L~~N~l~~------------------------------- 283 (873)
T KOG4194|consen 268 ---------------------------------LEKMEHLNLETNRLQA------------------------------- 283 (873)
T ss_pred ---------------------------------ecccceeecccchhhh-------------------------------
Confidence 1233344444333331
Q ss_pred ccccccccccCCCCCCchhhcccccceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCC
Q 002574 584 ADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDIS 663 (906)
Q Consensus 584 L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls 663 (906)
+...+.-.+..|+.|++|.|.|..+.+.++..+++|++|+|++|+++..-+..|..+..|++|+|+
T Consensus 284 --------------vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs 349 (873)
T KOG4194|consen 284 --------------VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS 349 (873)
T ss_pred --------------hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccc
Confidence 111111124556666666666666666677778888888888888887777778888888888888
Q ss_pred CCcccccCCcCCCCCCCCCEEECcCCcccccccc---ccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCcc
Q 002574 664 NNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPC---SLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLL 740 (906)
Q Consensus 664 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l 740 (906)
+|.+...-..+|..+++|+.|||++|.++..+.+ .|.++++|+.|++.+|+++ .||...+.++..|++|+|.+|.+
T Consensus 350 ~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 350 HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcc
Confidence 8888877777888888888888888888766543 3777888888888888888 88888888888888888888888
Q ss_pred ccccCccccCCCCCCEEeCCCCcC
Q 002574 741 SGDIPQRLCNLQNLHIIDLSHNNF 764 (906)
Q Consensus 741 ~~~~p~~l~~l~~L~~L~Ls~N~l 764 (906)
...-|.+|..+ .|+.|.+..-.|
T Consensus 429 aSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 429 ASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred eeecccccccc-hhhhhhhcccce
Confidence 88888888888 788777655433
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-35 Score=307.04 Aligned_cols=392 Identities=26% Similarity=0.262 Sum_probs=294.2
Q ss_pred EEEccCCcCCcccccccccCCCCCCCccEEECcCCCCCCccchhccCCCCCceeeccCccccCCCCccCCCCCCCCEEeC
Q 002574 340 SLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDL 419 (906)
Q Consensus 340 ~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 419 (906)
.||.+++.+.......+.++. ++.-+.|++++|++...-+..|.++++|+++++.+|.++ .+|..-....+|+.|+|
T Consensus 56 lldcs~~~lea~~~~~l~g~l--p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 56 LLDCSDRELEAIDKSRLKGFL--PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred eeecCccccccccccccCCcC--ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 455555555433222222221 225567888888888777777788888888888888877 66664445556888888
Q ss_pred cCccCCcccccchhccccCceeecCCCCccCCCChHHhhccccccEeecCCCCCcceeeeccCCCcCCCCccEEEeeccc
Q 002574 420 SYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQ 499 (906)
Q Consensus 420 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 499 (906)
.+|.|+..-.+++..++.|+.||++.|.++.+... .|..-.+
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~-sfp~~~n------------------------------------- 174 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKP-SFPAKVN------------------------------------- 174 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCC-CCCCCCC-------------------------------------
Confidence 88888776677777778888888888777654222 2322222
Q ss_pred CCCCCChhcccCCcccEEEccCCCccCCCChhhhhhcCCCccEEEccCCcccCCCCCCCCC-CCccEEeccCccCcccCC
Q 002574 500 VGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNS-PNLRSIDLSSNHFEGTLP 578 (906)
Q Consensus 500 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~-~~L~~L~ls~n~l~~~~~ 578 (906)
+++|++++|.|+..-...+.. .+|..|.+++|+++
T Consensus 175 ----------------------------------------i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit---- 210 (873)
T KOG4194|consen 175 ----------------------------------------IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT---- 210 (873)
T ss_pred ----------------------------------------ceEEeeccccccccccccccccchheeeecccCccc----
Confidence 333333333333222211111 13333333333333
Q ss_pred CCcccccccccccccCCCCCCchhhcccccceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCcc
Q 002574 579 LWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFW 658 (906)
Q Consensus 579 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~ 658 (906)
.+|...|+.+++|+.|++..|+|.-..-..|.++++|+.|.+..|.+...-...|..+.+++
T Consensus 211 ------------------tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme 272 (873)
T KOG4194|consen 211 ------------------TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME 272 (873)
T ss_pred ------------------ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence 67777788888899999999988755567889999999999999999988888899999999
Q ss_pred EEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCC
Q 002574 659 GIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSN 738 (906)
Q Consensus 659 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N 738 (906)
.|+|+.|++...-.+++-+++.|+.|++|+|.|...-++++.-+++|++|+|++|+++ .++..-+..+..|++|+|++|
T Consensus 273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred eeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhccccc
Confidence 9999999999888889999999999999999999888999999999999999999999 666666666999999999999
Q ss_pred ccccccCccccCCCCCCEEeCCCCcCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCc
Q 002574 739 LLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNN 818 (906)
Q Consensus 739 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~ 818 (906)
++...-...|..+++|+.|||++|.+++.|...-.- +..++.|+.|+|.+|+
T Consensus 352 si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~----------------------------f~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 352 SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA----------------------------FNGLPSLRKLRLTGNQ 403 (873)
T ss_pred chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh----------------------------hccchhhhheeecCce
Confidence 998776778899999999999999998777643111 1224555899999999
Q ss_pred ccccCChhhhccCCCCEEeCcCCcccccccccccCCCCCCeEeCcC
Q 002574 819 LTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSF 864 (906)
Q Consensus 819 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~ 864 (906)
+..+.-.+|..+..|+.|||.+|.|..+-|.+|..+ .|+.|-+..
T Consensus 404 lk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 404 LKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred eeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 996555799999999999999999999999999998 888887764
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.6e-38 Score=316.90 Aligned_cols=494 Identities=25% Similarity=0.355 Sum_probs=302.7
Q ss_pred CCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCCChhhhhcCCCCCEEEeecccccccCchhhcCCCCCCeEeC
Q 002574 239 SLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDL 318 (906)
Q Consensus 239 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L 318 (906)
.|+.+.+++|.+....+ .+.++..+.++++.+|++. ..|++++.+..++.++.++|++. .+|+.++.+.+|+.++.
T Consensus 46 ~l~~lils~N~l~~l~~--dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLRE--DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchhhccH--hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 45566666666655543 2566777777777777765 45666777777777777777776 56677777777777777
Q ss_pred CCCCCCCCCcchhhhcCCCCCEEEccCCcCCcccccccccCCCCCCCccEEECcCCCCCCccchhccCCCCCceeeccCc
Q 002574 319 SNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGN 398 (906)
Q Consensus 319 ~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 398 (906)
++| .+. ..++.++.+-.|+.++..+|+++..+++ +..+. +|..+++.+|+++ ..|+..-+++.|++|+...|
T Consensus 122 s~n-~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~-~~~~~----~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N 193 (565)
T KOG0472|consen 122 SSN-ELK-ELPDSIGRLLDLEDLDATNNQISSLPED-MVNLS----KLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSN 193 (565)
T ss_pred ccc-cee-ecCchHHHHhhhhhhhccccccccCchH-HHHHH----HHHHhhccccchh-hCCHHHHHHHHHHhcccchh
Confidence 777 443 4455666777777777777777654433 33333 6777777777777 34444444777777777777
Q ss_pred cccCCCCccCCCCCCCCEEeCcCccCCcccccchhccccCceeecCCCCccCCCChHHhhccccccEeecCCCCCcceee
Q 002574 399 SFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVF 478 (906)
Q Consensus 399 ~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 478 (906)
.+. .+|..++.+.+|.-|++..|++. ..| .|+++..|+++++..|++.- +|++...++.++..||+..|+.+.+
T Consensus 194 ~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNklke~-- 267 (565)
T KOG0472|consen 194 LLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNKLKEV-- 267 (565)
T ss_pred hhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHh-hHHHHhcccccceeeeccccccccC--
Confidence 665 56666777777777777777776 455 67777777777777776653 3444566666666666666633322
Q ss_pred eccCCCcCCCCccEEEeecccCCCCCChhcccCCcccEEEccCCCccCCCChhhhhhcCCCccEEEccCCcccCCCCCCC
Q 002574 479 NVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQM 558 (906)
Q Consensus 479 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 558 (906)
|+... ...+|++||+++|.+++..+..
T Consensus 268 --------------------------------------------------Pde~c--lLrsL~rLDlSNN~is~Lp~sL- 294 (565)
T KOG0472|consen 268 --------------------------------------------------PDEIC--LLRSLERLDLSNNDISSLPYSL- 294 (565)
T ss_pred --------------------------------------------------chHHH--HhhhhhhhcccCCccccCCccc-
Confidence 22111 2356788888888888544444
Q ss_pred CCCCccEEeccCccCcccCCC----C-cccccccccccccCCCCCCchhhcccccceeeccccccccccCCCCCCCCCCC
Q 002574 559 NSPNLRSIDLSSNHFEGTLPL----W-STNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDL 633 (906)
Q Consensus 559 ~~~~L~~L~ls~n~l~~~~~~----~-~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 633 (906)
+...|+.|.+.+|++...--. . ..-|++|.= ++...-+..- +.=..+.-..............+.
T Consensus 295 gnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs---~~~~dglS~s-------e~~~e~~~t~~~~~~~~~~~~i~t 364 (565)
T KOG0472|consen 295 GNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRS---KIKDDGLSQS-------EGGTETAMTLPSESFPDIYAIITT 364 (565)
T ss_pred ccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHH---hhccCCCCCC-------cccccccCCCCCCcccchhhhhhh
Confidence 334888888888876421000 0 001111110 0000000000 000000000000000111223344
Q ss_pred cEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCCE-EEccC
Q 002574 634 QILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTS-IDLGG 712 (906)
Q Consensus 634 ~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~-L~L~~ 712 (906)
+.|++++-+++ .+|+..+... .-.-.+..+++.|++. .+|..+..++.+.+ +.+++
T Consensus 365 kiL~~s~~qlt-~VPdEVfea~---------------------~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsn 421 (565)
T KOG0472|consen 365 KILDVSDKQLT-LVPDEVFEAA---------------------KSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSN 421 (565)
T ss_pred hhhcccccccc-cCCHHHHHHh---------------------hhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhc
Confidence 55555555554 3332221111 1112455666666666 55655555544433 34444
Q ss_pred CcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcCCCCCCcccccccccccCCCccchheeee
Q 002574 713 NQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIW 792 (906)
Q Consensus 713 N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~ 792 (906)
|.+ +.+|..+.. +++|..|+|++|.+. .+|.+++.+..|+.||+|+|+|. .+|.++..+..+
T Consensus 422 n~i-sfv~~~l~~-l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l-------------- 483 (565)
T KOG0472|consen 422 NKI-SFVPLELSQ-LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL-------------- 483 (565)
T ss_pred Ccc-ccchHHHHh-hhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH--------------
Confidence 444 366666655 777777777777666 67778888888999999999887 888887776666
Q ss_pred eeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCCCEEeCcCCcccccccccccCCCCCCeEeCcCCcccccCC
Q 002574 793 RVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIP 872 (906)
Q Consensus 793 ~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP 872 (906)
+.+-.++|++....|+.+.+|.+|..|||.+|.+. .||..++++++|+.|++.+|++. .|
T Consensus 484 -----------------Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~P 543 (565)
T KOG0472|consen 484 -----------------ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QP 543 (565)
T ss_pred -----------------HHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CC
Confidence 55666778998776777999999999999999998 68999999999999999999997 55
Q ss_pred CC
Q 002574 873 SL 874 (906)
Q Consensus 873 ~~ 874 (906)
..
T Consensus 544 r~ 545 (565)
T KOG0472|consen 544 RH 545 (565)
T ss_pred HH
Confidence 44
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=1.8e-34 Score=318.43 Aligned_cols=487 Identities=28% Similarity=0.381 Sum_probs=305.9
Q ss_pred CcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCCChhhhhcCCCCCEEEeecccccccCchhhcCCCCCCeEeCC
Q 002574 240 LVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLS 319 (906)
Q Consensus 240 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~ 319 (906)
++.|++..|.+-..|. ..+.+.-+|+.||+++|++. ..|..+..+.+|+.|+++.|.+. ..|.+..++.+|+++.|.
T Consensus 23 ~~~ln~~~N~~l~~pl-~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPL-EFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCch-HHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence 5555555554444332 12222333555555555543 34555555555555555555554 334445555555555555
Q ss_pred CCCCCCCCcchhhhcCCCCCEEEccCCcCCcccccccccCCCCCCCccEEECcCCCCCCccchhccCCCCCceeeccCcc
Q 002574 320 NNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNS 399 (906)
Q Consensus 320 ~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 399 (906)
+| .+ ...|..+..+++|+.|+++.| .+. .+|..+..++.++.+..++|.
T Consensus 100 ~n-~l-~~lP~~~~~lknl~~LdlS~N----------------------------~f~-~~Pl~i~~lt~~~~~~~s~N~ 148 (1081)
T KOG0618|consen 100 NN-RL-QSLPASISELKNLQYLDLSFN----------------------------HFG-PIPLVIEVLTAEEELAASNNE 148 (1081)
T ss_pred cc-hh-hcCchhHHhhhcccccccchh----------------------------ccC-CCchhHHhhhHHHHHhhhcch
Confidence 54 22 234444555555555555544 444 444445555555555555552
Q ss_pred ccCCCCccCCCCCCCCEEeCcCccCCcccccchhccccCceeecCCCCccCCCChHHhhccccccEeecCCCCCcceeee
Q 002574 400 FWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFN 479 (906)
Q Consensus 400 l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 479 (906)
.... ++... ++.+++..|.+.+.++..+..++. .+++.+|.+. +. ...++.+|+.+.+..|....+
T Consensus 149 ~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~---dls~~~~l~~l~c~rn~ls~l--- 214 (1081)
T KOG0618|consen 149 KIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL---DLSNLANLEVLHCERNQLSEL--- 214 (1081)
T ss_pred hhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh---hhhhccchhhhhhhhcccceE---
Confidence 2111 22221 556666666666666665555555 5666666655 11 455666666666666532222
Q ss_pred ccCCCcCCCCccEEEeecccCCCCCChhcccCCcccEEEccCCCccCCCChhhhhhcCCCccEEEccCCcccCCCCCCCC
Q 002574 480 VSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMN 559 (906)
Q Consensus 480 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 559 (906)
.+.+ .+++.|+.++|.++.. .....
T Consensus 215 --------------~~~g----------------------------------------~~l~~L~a~~n~l~~~-~~~p~ 239 (1081)
T KOG0618|consen 215 --------------EISG----------------------------------------PSLTALYADHNPLTTL-DVHPV 239 (1081)
T ss_pred --------------EecC----------------------------------------cchheeeeccCcceee-ccccc
Confidence 2211 2344455555544411 11122
Q ss_pred CCCccEEeccCccCcccCCCC---cccccccccccccCCCCCCchhhcccccceeeccccccccccCCCCCCCCCCCcEE
Q 002574 560 SPNLRSIDLSSNHFEGTLPLW---STNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQIL 636 (906)
Q Consensus 560 ~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 636 (906)
..+|+++++++|++++.. .| +.+++.+...+|.+. .+|..++. ..+|+.|.+..|.+. .+|......+.|+.|
T Consensus 240 p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTL 315 (1081)
T ss_pred cccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence 225556666666555433 43 556666666666664 66666655 567888888888887 456667778899999
Q ss_pred EccCCcCcccCCCC-ccCCCC-ccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCCEEEccCCc
Q 002574 637 SIRSNKLSGEFPNC-WYHSQM-FWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQ 714 (906)
Q Consensus 637 ~Ls~n~l~~~~p~~-l~~~~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~ 714 (906)
+|..|++. .+|+. +.-... +..|+.+.|++.......-..++.|+.|++.+|.++...-..+.+...|+.|+|++|+
T Consensus 316 dL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 316 DLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred eehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 99999987 44443 333333 6777788887764432222346778899999999998877788999999999999999
Q ss_pred CcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcCCCCCCcccccccccccCCCccchheeeeee
Q 002574 715 LSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRV 794 (906)
Q Consensus 715 l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~ 794 (906)
+. ++|+....++..|++|+|+||+++ .+|..+..+..|++|...+|.+. ..| .+.++++|
T Consensus 395 L~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL---------------- 454 (1081)
T KOG0618|consen 395 LN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL---------------- 454 (1081)
T ss_pred cc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc----------------
Confidence 97 899888888999999999999998 67888999999999999999987 666 66666666
Q ss_pred ecCCCcccccccCcccEEEcCCCcccccC-ChhhhccCCCCEEeCcCCcccccccccccCCCCCCeEeCcCCcccccCCC
Q 002574 795 VKGRNPEYSNIIADVNSIDLSWNNLTGQI-PDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPS 873 (906)
Q Consensus 795 ~~~~~~~~~~~~~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 873 (906)
+.+|+|.|+|+... |.... -++|++|||++|.-....-..|..+.++..+++.-| .+|+
T Consensus 455 ---------------~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~----~~~d 514 (1081)
T KOG0618|consen 455 ---------------KVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN----NTPD 514 (1081)
T ss_pred ---------------eEEecccchhhhhhhhhhCC-CcccceeeccCCcccccchhhhHHhhhhhheecccC----CCCc
Confidence 88999999998543 43332 389999999999865555667777788888887766 5565
Q ss_pred C
Q 002574 874 L 874 (906)
Q Consensus 874 ~ 874 (906)
+
T Consensus 515 ~ 515 (1081)
T KOG0618|consen 515 G 515 (1081)
T ss_pred c
Confidence 5
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=6.2e-34 Score=314.14 Aligned_cols=416 Identities=27% Similarity=0.340 Sum_probs=300.2
Q ss_pred CccEEECcCCCCCCccchhccCCCCCceeeccCccccCCCCccCCCCCCCCEEeCcCccCCcccccchhccccCceeecC
Q 002574 365 NLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLL 444 (906)
Q Consensus 365 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 444 (906)
+|+.|+++.|.+. ..|....++.+|+++.|.+|.+. ..|..+..+.+|+.||++.|.+. .+|..+..++.+..+..+
T Consensus 69 ~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s 145 (1081)
T KOG0618|consen 69 HLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAAS 145 (1081)
T ss_pred HHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhh
Confidence 5555555555555 45555666666666666666655 56666666666666666666665 566666666666666666
Q ss_pred CCCccCCCChHHhhccccccEeecCCCCCcceeeeccCCCcCCCCccEEEeecccCCCCCChhcccCCcccEEEccCCCc
Q 002574 445 QNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGI 524 (906)
Q Consensus 445 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 524 (906)
+|...... +.. .++.+++..+.+.+.++..+..+++ .+++.+|.+
T Consensus 146 ~N~~~~~l-----g~~----------------------------~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~ 190 (1081)
T KOG0618|consen 146 NNEKIQRL-----GQT----------------------------SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEM 190 (1081)
T ss_pred cchhhhhh-----ccc----------------------------cchhhhhhhhhcccchhcchhhhhe--eeecccchh
Confidence 66211111 111 1233334444555555555555555 577777766
Q ss_pred cCCCChhhhhhcCCCccEEEccCCcccCCCCCCCCCCCccEEeccCccCcccCCCC-cccccccccccccCCCCCCchhh
Q 002574 525 SDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLW-STNADELFLQDNRFSGPLPENIG 603 (906)
Q Consensus 525 ~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~p~~~~ 603 (906)
. .. -...+.+|+.+....|++... ....++++.|+.++|.++...+.. +.+++++++++|+++ .+| .+.
T Consensus 191 ~-~~----dls~~~~l~~l~c~rn~ls~l---~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp-~wi 260 (1081)
T KOG0618|consen 191 E-VL----DLSNLANLEVLHCERNQLSEL---EISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLP-EWI 260 (1081)
T ss_pred h-hh----hhhhccchhhhhhhhcccceE---EecCcchheeeeccCcceeeccccccccceeeecchhhhh-cch-HHH
Confidence 5 11 112356788888888877632 233468999999999999666654 679999999999998 677 444
Q ss_pred cccccceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCC-CC
Q 002574 604 SLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRS-LS 682 (906)
Q Consensus 604 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~ 682 (906)
..+.+|+.+...+|+++ .+|..+....+|+.|.+.+|.+. -+|......+.|+.|+|..|++....+..+..... |+
T Consensus 261 ~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~ 338 (1081)
T KOG0618|consen 261 GACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLN 338 (1081)
T ss_pred HhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHH
Confidence 45899999999999995 67788888999999999999998 67777888999999999999998554444444443 77
Q ss_pred EEECcCCccccccccccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCC
Q 002574 683 VLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHN 762 (906)
Q Consensus 683 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 762 (906)
.|..+.|++.......=...+.|+.|.+.+|.+++..-.-+- +...|++|+|++|++.......+.+++.|+.|+||+|
T Consensus 339 ~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 339 TLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN 417 (1081)
T ss_pred HHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc-cccceeeeeecccccccCCHHHHhchHHhHHHhcccc
Confidence 788888888743322223456789999999999876544443 4899999999999998655567889999999999999
Q ss_pred cCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCCCEEeCcCCc
Q 002574 763 NFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQ 842 (906)
Q Consensus 763 ~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~ 842 (906)
+++ .+|.++.++..| ++|...+|++. ..| ++.++++|+.+|+|.|+
T Consensus 418 kL~-~Lp~tva~~~~L-------------------------------~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 418 KLT-TLPDTVANLGRL-------------------------------HTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred hhh-hhhHHHHhhhhh-------------------------------HHHhhcCCcee-ech-hhhhcCcceEEecccch
Confidence 998 888988888888 78999999998 677 79999999999999999
Q ss_pred cccc-ccccccCCCCCCeEeCcCCc
Q 002574 843 LSGA-IPQSLSSLASLSKLNLSFNN 866 (906)
Q Consensus 843 l~~~-ip~~l~~l~~L~~L~ls~N~ 866 (906)
++.. +|..... +.|++||+++|.
T Consensus 464 L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 464 LSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhhhhCCC-cccceeeccCCc
Confidence 9854 4444433 799999999997
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1e-31 Score=282.79 Aligned_cols=240 Identities=25% Similarity=0.382 Sum_probs=156.4
Q ss_pred CCCchhhcccccceeeccccccccccCCCCCCCCCCCcEEEccCCcCc-ccCCCCccCCCCccEEeCCCCcccccCCcCC
Q 002574 597 PLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLS-GEFPNCWYHSQMFWGIDISNNSLTGSIPSSF 675 (906)
Q Consensus 597 ~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~ 675 (906)
.+|..+.. +..|++|++++|.+.-..-..+..+++|++|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. .+|+.+
T Consensus 164 ~LPPQ~RR-L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecl 241 (1255)
T KOG0444|consen 164 MLPPQIRR-LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECL 241 (1255)
T ss_pred hcCHHHHH-HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHH
Confidence 44444433 556777778887765333344455667777777776544 346777777777777777777776 667777
Q ss_pred CCCCCCCEEECcCCccccccccccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCcccc-ccCccccCCCCC
Q 002574 676 GSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSG-DIPQRLCNLQNL 754 (906)
Q Consensus 676 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L 754 (906)
-++++|+.|+||+|+|+ .+....+...+|++|+++.|+++ .+|..+-. ++.|+.|.+.+|+++- -||..|+.+.+|
T Consensus 242 y~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK-L~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK-LTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred hhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh-hHHHHHHHhccCcccccCCccchhhhhhh
Confidence 77777777777777776 33334455567777777777777 77777665 7777777777777653 367777777777
Q ss_pred CEEeCCCCcCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCCC
Q 002574 755 HIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALH 834 (906)
Q Consensus 755 ~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~ 834 (906)
+++..++|.+. ..|+.+..+..| +.|.|+.|++- .+|+++.-|+.|+
T Consensus 319 evf~aanN~LE-lVPEglcRC~kL-------------------------------~kL~L~~NrLi-TLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 319 EVFHAANNKLE-LVPEGLCRCVKL-------------------------------QKLKLDHNRLI-TLPEAIHLLPDLK 365 (1255)
T ss_pred HHHHhhccccc-cCchhhhhhHHH-------------------------------HHhccccccee-echhhhhhcCCcc
Confidence 77777777765 667777666666 56777777776 5677777777777
Q ss_pred EEeCcCCcccccccccccCCCCCCeEeCcCC-----cccccCCCC
Q 002574 835 ILNLSHNQLSGAIPQSLSSLASLSKLNLSFN-----NLAGKIPSL 874 (906)
Q Consensus 835 ~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N-----~l~g~iP~~ 874 (906)
.|||..|.-....|.-=..-++|+.-++.+- ++.|..|..
T Consensus 366 vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pas 410 (1255)
T KOG0444|consen 366 VLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPAS 410 (1255)
T ss_pred eeeccCCcCccCCCCcchhhhcceeeecceehhhHHhhccCCccc
Confidence 7777777654333322222245555554431 345555543
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3.9e-31 Score=278.31 Aligned_cols=370 Identities=28% Similarity=0.395 Sum_probs=244.9
Q ss_pred cCCCCCCEEeCCCCCCCCCCCChhhhcCCCCCeeeccCCcCccCCCcCcCCCCCCcEEEccCCCCCCCcCCccccccchh
Q 002574 126 LHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLN 205 (906)
Q Consensus 126 ~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~ 205 (906)
+-++..|-.|+++|.++|..+|..+..+++++.|.|...++. .+|+.++.|.+|++|.+++|++..+.+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhG---------- 72 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHG---------- 72 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhh----------
Confidence 446778889999999998889999999999999999999887 899999999999999998887654322
Q ss_pred hhcCCCCCcEEECCCccCCCCCcchHHHhcCCCCCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCCChhhhhc
Q 002574 206 WLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFS 285 (906)
Q Consensus 206 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~ 285 (906)
.+..++.|+.+.+..|++........+..+..|++||||+|++. ..|..+..
T Consensus 73 ---------------------------ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~ 124 (1255)
T KOG0444|consen 73 ---------------------------ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY 124 (1255)
T ss_pred ---------------------------hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhh
Confidence 33344455555555554433222233566666777777777765 45666666
Q ss_pred CCCCCEEEeecccccccCchhhcCCCCCCeEeCCCCCCCCCCcchhhhcCCCCCEEEccCCcCCcccccccccCCCCCCC
Q 002574 286 LTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNN 365 (906)
Q Consensus 286 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~ 365 (906)
-+++-.|+|++|+|..+....|-+++.|-.|||++| .+. .+|..+..+..|++|+|++|.+.....
T Consensus 125 AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQL------------ 190 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQL------------ 190 (1255)
T ss_pred hcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhh-hcCHHHHHHhhhhhhhcCCChhhHHHH------------
Confidence 677777777777766433344556666666666666 443 344455556666666666655432211
Q ss_pred ccEEECcCCCCCCccchhccCCCCCceeeccCcccc-CCCCccCCCCCCCCEEeCcCccCCcccccchhccccCceeecC
Q 002574 366 LEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFW-GSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLL 444 (906)
Q Consensus 366 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 444 (906)
..+..+++|+.|.+++.+-+ .-+|.++..+.+|..+|+|.|.+. .+|+.+.++++|+.|+++
T Consensus 191 ----------------rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS 253 (1255)
T KOG0444|consen 191 ----------------RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLS 253 (1255)
T ss_pred ----------------hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccC
Confidence 12233455555556554432 346777777888888888888877 778888888888888888
Q ss_pred CCCccCCCChHHhhccccccEeecCCCCCcceeeeccCCCcCCCCccEEEeecccCCCCCChhcccCCcccEEEccCCCc
Q 002574 445 QNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGI 524 (906)
Q Consensus 445 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 524 (906)
+|.++..-.. .
T Consensus 254 ~N~iteL~~~--~------------------------------------------------------------------- 264 (1255)
T KOG0444|consen 254 GNKITELNMT--E------------------------------------------------------------------- 264 (1255)
T ss_pred cCceeeeecc--H-------------------------------------------------------------------
Confidence 8876643100 0
Q ss_pred cCCCChhhhhhcCCCccEEEccCCcccCCCCCCCCCCCccEEeccCccCcccCCCCcccccccccccccCCCCCCchhhc
Q 002574 525 SDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGS 604 (906)
Q Consensus 525 ~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 604 (906)
....++++|+++.|+++ .+|+.+..
T Consensus 265 ----------~~W~~lEtLNlSrNQLt---------------------------------------------~LP~avcK 289 (1255)
T KOG0444|consen 265 ----------GEWENLETLNLSRNQLT---------------------------------------------VLPDAVCK 289 (1255)
T ss_pred ----------HHHhhhhhhccccchhc---------------------------------------------cchHHHhh
Confidence 00123455555555544 34444443
Q ss_pred ccccceeecccccccc-ccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCE
Q 002574 605 LMPRLQRLYLSWNQLS-GRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSV 683 (906)
Q Consensus 605 ~~~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 683 (906)
+++|+.|++.+|+++ .-+|..++.+.+|+++..++|.+. .+|+.+..|..|+.|.|++|++- .+|+++.-++.|+.
T Consensus 290 -L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~v 366 (1255)
T KOG0444|consen 290 -LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKV 366 (1255)
T ss_pred -hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcce
Confidence 455666666666554 235677777888888888877775 77888888888888888888776 56777777888888
Q ss_pred EECcCCccc
Q 002574 684 LLLSNNNLS 692 (906)
Q Consensus 684 L~Ls~n~l~ 692 (906)
||+.+|.-.
T Consensus 367 LDlreNpnL 375 (1255)
T KOG0444|consen 367 LDLRENPNL 375 (1255)
T ss_pred eeccCCcCc
Confidence 888887654
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=4.2e-21 Score=239.60 Aligned_cols=346 Identities=21% Similarity=0.261 Sum_probs=167.4
Q ss_pred chhhhcCCCCCEEEccCCcCC------cccccccccCCCCCCCccEEECcCCCCCCccchhccCCCCCceeeccCccccC
Q 002574 329 PKLFGILRRLKSLDLSANNLN------GEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWG 402 (906)
Q Consensus 329 ~~~l~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 402 (906)
+..|.++++|+.|.+..+... ...|..+..+ +++|+.|++.++.+. .+|..+ .+.+|+.|++.+|++.
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~l---p~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYL---PPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhc---CcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-
Confidence 344566666666666544321 1222222222 125666666666554 455544 3455666666665554
Q ss_pred CCCccCCCCCCCCEEeCcCccCCcccccchhccccCceeecCCCCccCCCChHHhhccccccEeecCCCCCcceeeeccC
Q 002574 403 SIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSY 482 (906)
Q Consensus 403 ~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 482 (906)
.++..+..+++|+.|+++++...+.+|. +..+++|+.|++.+|....
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~-------------------------------- 671 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLV-------------------------------- 671 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCcc--------------------------------
Confidence 3444455555666666655543334442 4444444444444443322
Q ss_pred CCcCCCCccEEEeecccCCCCCChhcccCCcccEEEccCCCccCCCChhhhhhcCCCccEEEccCCcccCCCCCCCCCCC
Q 002574 483 NWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPN 562 (906)
Q Consensus 483 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~ 562 (906)
.+|..+..+++|+.|++++|.....+|... .+++|+.|++++|...+.+|.. ..+
T Consensus 672 --------------------~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~~--~~n 726 (1153)
T PLN03210 672 --------------------ELPSSIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGCSRLKSFPDI--STN 726 (1153)
T ss_pred --------------------ccchhhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCCCCccccccc--cCC
Confidence 333444444444444444444444444311 2345666666666544444432 236
Q ss_pred ccEEeccCccCcccCCCC--cccccccccccccCCCCCCchhhcccccceeeccccccccccCCCCCCCCCCCcEEEccC
Q 002574 563 LRSIDLSSNHFEGTLPLW--STNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRS 640 (906)
Q Consensus 563 L~~L~ls~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 640 (906)
|++|++++|.+.. +|.. +.+|++|.+.++... .+.. .+....+..+...++|+.|++++
T Consensus 727 L~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~-~l~~-----------------~~~~l~~~~~~~~~sL~~L~Ls~ 787 (1153)
T PLN03210 727 ISWLDLDETAIEE-FPSNLRLENLDELILCEMKSE-KLWE-----------------RVQPLTPLMTMLSPSLTRLFLSD 787 (1153)
T ss_pred cCeeecCCCcccc-ccccccccccccccccccchh-hccc-----------------cccccchhhhhccccchheeCCC
Confidence 6777777776543 3322 345555555443211 0000 00001111122234555555555
Q ss_pred CcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCCEEEccCCcCccccc
Q 002574 641 NKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLP 720 (906)
Q Consensus 641 n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 720 (906)
|...+.+|..+.++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. .++|+.|++++|.+. .+|
T Consensus 788 n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP 862 (1153)
T PLN03210 788 IPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVP 862 (1153)
T ss_pred CCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cCh
Confidence 55555555555555555555555554333444433 4555566666555444344432 245556666666555 555
Q ss_pred HHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCc
Q 002574 721 LWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNN 763 (906)
Q Consensus 721 ~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 763 (906)
.++.. +++|+.|++++|.-...+|..+..+++|+.+++++|.
T Consensus 863 ~si~~-l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 863 WWIEK-FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred HHHhc-CCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 55543 5666666665544333455555555666666655553
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=5.1e-24 Score=214.51 Aligned_cols=417 Identities=24% Similarity=0.271 Sum_probs=230.8
Q ss_pred CCCCEEEeecccccccCchhhcCCCCCCeEeCCCCCCCCCCcchhhhcCCCCCEEEccC-CcCCcccccccccCCCCCCC
Q 002574 287 TSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSA-NNLNGEVHEFFDGFSGRPNN 365 (906)
Q Consensus 287 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~~~~~ 365 (906)
+.-..++|..|+|+.+.+.+|+.+++|+.|||++| .++.+-|.+|.++++|.+|-+.+ |+|+......|+++. .
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~----s 141 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS----S 141 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH----H
Confidence 35566777777777666667777777777777777 67667777777777766665555 777777777777776 7
Q ss_pred ccEEECcCCCCCCccchhccCCCCCceeeccCccccCCCCccCCCCCCCCEEeCcCccCCcccccchhccccCceeecCC
Q 002574 366 LEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQ 445 (906)
Q Consensus 366 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 445 (906)
|+.|.+.-|++.-...+.|..++++..|.+.+|.+...--..|..+..++.+.+..|.+.. ..+++.+..-. .-
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~-a~ 215 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL-AM 215 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhHH-hh
Confidence 7777777777776666677777777777777777764333367777777777777776421 12222221110 00
Q ss_pred CCccCCCChHHhhccccccEeecCCCCCcceeeeccCCCcCCCCccEEEeecccCCCCCChhcccCCcccEEEccCCCcc
Q 002574 446 NSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGIS 525 (906)
Q Consensus 446 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 525 (906)
+.+ .++...-....++.+.++.
T Consensus 216 ~~i-------etsgarc~~p~rl~~~Ri~--------------------------------------------------- 237 (498)
T KOG4237|consen 216 NPI-------ETSGARCVSPYRLYYKRIN--------------------------------------------------- 237 (498)
T ss_pred chh-------hcccceecchHHHHHHHhc---------------------------------------------------
Confidence 110 1111111111111111000
Q ss_pred CCCChhhhhhcCCCccEEEccCCcccCCCCCCCCCCCccEEeccCccCcccCCCCcccccccccccccCCCCCCchhhcc
Q 002574 526 DTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSL 605 (906)
Q Consensus 526 ~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 605 (906)
.++..-|... ++ ++..-..+.+...+.-|..-
T Consensus 238 -q~~a~kf~c~---~e-----------------------------------------sl~s~~~~~d~~d~~cP~~c--- 269 (498)
T KOG4237|consen 238 -QEDARKFLCS---LE-----------------------------------------SLPSRLSSEDFPDSICPAKC--- 269 (498)
T ss_pred -ccchhhhhhh---HH-----------------------------------------hHHHhhccccCcCCcChHHH---
Confidence 0000000000 00 00000001111112333333
Q ss_pred cccceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEEE
Q 002574 606 MPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLL 685 (906)
Q Consensus 606 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 685 (906)
|..+++|+.|++++|+++++-+.+|.+...++.|.|..|++.......|.++..|+.|+
T Consensus 270 ---------------------f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~ 328 (498)
T KOG4237|consen 270 ---------------------FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLS 328 (498)
T ss_pred ---------------------HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeee
Confidence 45566666666666666666666666666666666666666655556677777777788
Q ss_pred CcCCccccccccccccCCCCCEEEccCCcCccccc-HHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcC
Q 002574 686 LSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLP-LWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNF 764 (906)
Q Consensus 686 Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 764 (906)
|.+|+|+...|.+|..+.+|.+|++-.|++-..-- .|+.+ .|+++...|..|- +.-..++.++++++.+
T Consensus 329 L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~--------Wlr~~~~~~~~~C--q~p~~~~~~~~~dv~~ 398 (498)
T KOG4237|consen 329 LYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE--------WLRKKSVVGNPRC--QSPGFVRQIPISDVAF 398 (498)
T ss_pred ecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH--------HHhhCCCCCCCCC--CCCchhccccchhccc
Confidence 88888777777777777778888777776643211 23322 1222332222211 1112334444444433
Q ss_pred C---CCCCcccc---------cccccccCCCccchheeeeee-ecCCCcccccccCcccEEEcCCCcccccCChhhhccC
Q 002574 765 S---GAIPRCIG---------NLSALVYGNNSEVFQQLIWRV-VKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLS 831 (906)
Q Consensus 765 ~---~~ip~~~~---------~l~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~ 831 (906)
. -.-|++.+ .++.+. .+... -++...-..+....-+++++.+|.++ .+|.+ .+.
T Consensus 399 ~~~~c~~~ee~~~~~s~~cP~~c~c~~----------tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp~~--~~~ 465 (498)
T KOG4237|consen 399 GDFRCGGPEELGCLTSSPCPPPCTCLD----------TVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVPDE--LLR 465 (498)
T ss_pred cccccCCccccCCCCCCCCCCCcchhh----------hhHhhcccchhhcCCCCCchhHHHhcccchhc-ccCHH--HHh
Confidence 2 11222211 112110 00000 01111111233445588999999999 78877 778
Q ss_pred CCCEEeCcCCcccccccccccCCCCCCeEeCcCC
Q 002574 832 ALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFN 865 (906)
Q Consensus 832 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N 865 (906)
+| .+|+|+|+++..--..|.+++.|.+|-+|||
T Consensus 466 ~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 466 SL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 88 9999999999888888999999999999997
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1.6e-20 Score=234.31 Aligned_cols=338 Identities=23% Similarity=0.331 Sum_probs=202.7
Q ss_pred chhhcCCCCCCeEeCCCCC-----CCCCCcchhhhcCC-CCCEEEccCCcCCcccccccccCCCCCCCccEEECcCCCCC
Q 002574 304 PNEFANLKLLEVLDLSNNL-----DLGGQLPKLFGILR-RLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLE 377 (906)
Q Consensus 304 ~~~l~~l~~L~~L~L~~n~-----~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~ 377 (906)
+.+|.++++|+.|.+..+. .....+|..+..++ +|+.|++.++.+...+ ..+. +.+|++|++.+|++.
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP-~~f~-----~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMP-SNFR-----PENLVKLQMQGSKLE 624 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCC-CcCC-----ccCCcEEECcCcccc
Confidence 4567778888888876541 12234566666664 6899999988876543 3332 238999999999987
Q ss_pred CccchhccCCCCCceeeccCccccCCCCccCCCCCCCCEEeCcCccCCcccccchhccccCceeecCCCCccCCCChHHh
Q 002574 378 GELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQF 457 (906)
Q Consensus 378 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 457 (906)
.+|..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..
T Consensus 625 -~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-- 700 (1153)
T PLN03210 625 -KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-- 700 (1153)
T ss_pred -ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--
Confidence 6778888899999999998876667775 888999999999999877788999999999999999887644444431
Q ss_pred hccccccEeecCCCCCcceeeeccCCCcCCCCccEEEeecccCCCCCChhcccCCcccEEEccCCCccCCCChhhhhhcC
Q 002574 458 MNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISDTIPGDWFSKLS 537 (906)
Q Consensus 458 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~ 537 (906)
.++++|+.|++++| .....+|. ..
T Consensus 701 i~l~sL~~L~Lsgc---------------------------------------------------~~L~~~p~-----~~ 724 (1153)
T PLN03210 701 INLKSLYRLNLSGC---------------------------------------------------SRLKSFPD-----IS 724 (1153)
T ss_pred CCCCCCCEEeCCCC---------------------------------------------------CCcccccc-----cc
Confidence 14444444444443 22222221 12
Q ss_pred CCccEEEccCCcccCCCCCCCCCCCccEEeccCccCccc----------CCCCcccccccccccccCCCCCCchhhcccc
Q 002574 538 SEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGT----------LPLWSTNADELFLQDNRFSGPLPENIGSLMP 607 (906)
Q Consensus 538 ~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~----------~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 607 (906)
.+|+.|++++|.+. .+|.....++|++|.+.++..... ....+++|+.|++++|...+.+|..+.. ++
T Consensus 725 ~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~-L~ 802 (1153)
T PLN03210 725 TNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN-LH 802 (1153)
T ss_pred CCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhC-CC
Confidence 34566666666554 445555555666666655432110 0011345555555555555555554332 45
Q ss_pred cceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEEECc
Q 002574 608 RLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLS 687 (906)
Q Consensus 608 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 687 (906)
+|++|++++|...+.+|..+ .+++|+.|++++|.....+|.. ..+|+.|++++|.++ .+|.++..+++|+.|+++
T Consensus 803 ~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~ 877 (1153)
T PLN03210 803 KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMN 877 (1153)
T ss_pred CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECC
Confidence 55555555554433444433 4555555555555444344332 244555555555554 345555555555555555
Q ss_pred CCccccccccccccCCCCCEEEccCCc
Q 002574 688 NNNLSGGIPCSLQNCTGLTSIDLGGNQ 714 (906)
Q Consensus 688 ~n~l~~~~p~~l~~l~~L~~L~L~~N~ 714 (906)
+|.-...+|..+..+++|+.+++++|.
T Consensus 878 ~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 878 GCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCcCccCcccccccCCCeeecCCCc
Confidence 544333445455555555555555553
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=1.4e-22 Score=204.29 Aligned_cols=264 Identities=25% Similarity=0.271 Sum_probs=178.7
Q ss_pred CCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCCChhhhhcCCCCCEEEeec-ccccccCchhhcCCCCCCeEe
Q 002574 239 SLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRW-NFFTGHIPNEFANLKLLEVLD 317 (906)
Q Consensus 239 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~ 317 (906)
.-.+++|..|+|+.+|+ .+|+.+++|+.||||+|.|+.+-|..|..+++|..|-+.+ |+|+......|+++..|+.|.
T Consensus 68 ~tveirLdqN~I~~iP~-~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPP-GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCCh-hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 55788888999988887 5689999999999999999988899999999888877766 888876667889999999999
Q ss_pred CCCCCCCCCCcchhhhcCCCCCEEEccCCcCCcccccccccCCCCCCCccEEECcCCCCCC------------ccchhcc
Q 002574 318 LSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEG------------ELPKSLG 385 (906)
Q Consensus 318 L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~------------~~p~~l~ 385 (906)
+.-| ++.......|..+++|..|.+.+|.+..+....|.++. .++.+.+..|.+.. ..|..++
T Consensus 147 lNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~----~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 147 LNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLA----AIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred cChh-hhcchhHHHHHHhhhcchhcccchhhhhhccccccchh----ccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 9888 88888888899999999999999988877666777777 88888888887321 1222233
Q ss_pred CCCCCceeeccCccccC-------------------------CCC-ccCCCCCCCCEEeCcCccCCcccccchhccccCc
Q 002574 386 NLKNLQYLRLSGNSFWG-------------------------SIP-SSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELV 439 (906)
Q Consensus 386 ~l~~L~~L~L~~n~l~~-------------------------~~p-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 439 (906)
......-..+.+.++.. .-| ..|..+++|+.|++++|++++.-+.+|.+...++
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ 301 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence 33222222232222221 112 2355666666666666666666666666666666
Q ss_pred eeecCCCCccCCCChHHhhccccccEeecCCCCCcceeeeccCCCcCCCCccEEEeecccCCCCCChhcccCCcccEEEc
Q 002574 440 DANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVIL 519 (906)
Q Consensus 440 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 519 (906)
+|.+..|++..+-.. .|.++..|+.|++.+| +++...|..+.....|.+|.+
T Consensus 302 eL~L~~N~l~~v~~~-~f~~ls~L~tL~L~~N---------------------------~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 302 ELYLTRNKLEFVSSG-MFQGLSGLKTLSLYDN---------------------------QITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred hhhcCcchHHHHHHH-hhhccccceeeeecCC---------------------------eeEEEecccccccceeeeeeh
Confidence 666666666544332 5666666666665555 444444555666666666666
Q ss_pred cCCCccCCCChhhhhhc
Q 002574 520 RNVGISDTIPGDWFSKL 536 (906)
Q Consensus 520 ~~~~~~~~~p~~~~~~~ 536 (906)
-.|.+.-.---.|+..+
T Consensus 354 ~~Np~~CnC~l~wl~~W 370 (498)
T KOG4237|consen 354 LSNPFNCNCRLAWLGEW 370 (498)
T ss_pred ccCcccCccchHHHHHH
Confidence 55555433223344443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=1.1e-20 Score=217.91 Aligned_cols=241 Identities=28% Similarity=0.376 Sum_probs=123.3
Q ss_pred CccEEeccCccCcccCCCCcccccccccccccCCCCCCchhhcccccceeeccccccccccCCCCCCCCCCCcEEEccCC
Q 002574 562 NLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSN 641 (906)
Q Consensus 562 ~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 641 (906)
+|+.|++.+|+++. +|..+++|++|++++|+++ .+|.. .++|++|++++|.++. +|.. .++|+.|++++|
T Consensus 223 ~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N 292 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPALPPELRTLEVSGNQLT-SLPVL----PPGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGN 292 (788)
T ss_pred CCCEEEccCCcCCC-CCCCCCCCcEEEecCCccC-cccCc----ccccceeeccCCchhh-hhhc---hhhcCEEECcCC
Confidence 34444444444332 2333344444444444444 23321 2345555555555542 2221 234555666666
Q ss_pred cCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCCEEEccCCcCcccccH
Q 002574 642 KLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPL 721 (906)
Q Consensus 642 ~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 721 (906)
+++ .+|. ..++|+.|++++|++++. |.. ..+|+.|++++|.+.+ +|.. ..+|+.|++++|+++ .+|.
T Consensus 293 ~Lt-~LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~ 359 (788)
T PRK15387 293 QLT-SLPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPT 359 (788)
T ss_pred ccc-cccc---cccccceeECCCCccccC-CCC---cccccccccccCcccc-cccc---ccccceEecCCCccC-CCCC
Confidence 655 2333 134566666666666542 321 1245556666666652 3421 135666666666665 4443
Q ss_pred HHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcCCCCCCcccccccccccCCCccchheeeeeeecCCCcc
Q 002574 722 WISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPE 801 (906)
Q Consensus 722 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 801 (906)
. ..+|+.|++++|++.+ +|.. ..+|+.|++++|+++ .+|... +.
T Consensus 360 l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l~---s~------------------------ 403 (788)
T PRK15387 360 L----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVLP---SE------------------------ 403 (788)
T ss_pred C----Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCcc---cC------------------------
Confidence 2 3455666666666653 4432 235666666666665 244321 12
Q ss_pred cccccCcccEEEcCCCcccccCChhhhccCCCCEEeCcCCcccccccccccCCCCCCeEeCcCCcccccCCC
Q 002574 802 YSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPS 873 (906)
Q Consensus 802 ~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 873 (906)
|+.|++++|++++ +|... .+|+.|++++|+++ .+|..+.+++.|+.|++++|+|+|.+|.
T Consensus 404 -------L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 404 -------LKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred -------CCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 2556666666663 45432 34556666666666 4666666666666666666666666554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=3.1e-20 Score=214.14 Aligned_cols=265 Identities=29% Similarity=0.416 Sum_probs=192.1
Q ss_pred cEEEccCCCccCCCChhhhhhcCCCccEEEccCCcccCCCCCCCCCCCccEEeccCccCcccCCCCcccccccccccccC
Q 002574 515 TSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRF 594 (906)
Q Consensus 515 ~~L~l~~~~~~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l 594 (906)
..|+++++.++ .+|... +.+++.|++.+|+++. +|.. .++|++|++++|.++. +|..+.+|+.|++++|.+
T Consensus 204 ~~LdLs~~~Lt-sLP~~l----~~~L~~L~L~~N~Lt~-LP~l--p~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCL----PAHITTLVIPDNNLTS-LPAL--PPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPL 274 (788)
T ss_pred cEEEcCCCCCC-cCCcch----hcCCCEEEccCCcCCC-CCCC--CCCCcEEEecCCccCc-ccCcccccceeeccCCch
Confidence 45566666554 445422 2356777777777663 3432 3577777777777764 355567777888888777
Q ss_pred CCCCCchhhcccccceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcC
Q 002574 595 SGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSS 674 (906)
Q Consensus 595 ~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~ 674 (906)
. .+|. ....|+.|++++|+++. +|. .+++|+.|++++|++++ +|.. ...|+.|++++|.+++ +|..
T Consensus 275 ~-~Lp~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l 340 (788)
T PRK15387 275 T-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL 340 (788)
T ss_pred h-hhhh----chhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc
Confidence 6 3443 23567788888888874 343 25789999999999885 4542 3467888999999875 4432
Q ss_pred CCCCCCCCEEECcCCccccccccccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCC
Q 002574 675 FGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNL 754 (906)
Q Consensus 675 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 754 (906)
..+|+.|+|++|++++ +|.. ..+|+.|++++|++. .+|.. ..+|+.|++++|++++ +|.. .++|
T Consensus 341 ---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt~-LP~l---~s~L 404 (788)
T PRK15387 341 ---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LPVL---PSEL 404 (788)
T ss_pred ---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc----ccccceEEecCCcccC-CCCc---ccCC
Confidence 2479999999999984 5543 357888999999998 57753 4679999999999985 5543 3679
Q ss_pred CEEeCCCCcCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCCC
Q 002574 755 HIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALH 834 (906)
Q Consensus 755 ~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~ 834 (906)
+.|++++|+++ .+|.... .| +.|++++|+++ .+|..+.++++|+
T Consensus 405 ~~LdLS~N~Ls-sIP~l~~---~L-------------------------------~~L~Ls~NqLt-~LP~sl~~L~~L~ 448 (788)
T PRK15387 405 KELMVSGNRLT-SLPMLPS---GL-------------------------------LSLSVYRNQLT-RLPESLIHLSSET 448 (788)
T ss_pred CEEEccCCcCC-CCCcchh---hh-------------------------------hhhhhccCccc-ccChHHhhccCCC
Confidence 99999999998 4675322 23 67899999999 7899999999999
Q ss_pred EEeCcCCcccccccccccCC
Q 002574 835 ILNLSHNQLSGAIPQSLSSL 854 (906)
Q Consensus 835 ~L~Ls~N~l~~~ip~~l~~l 854 (906)
.|+|++|++++.+|..+..+
T Consensus 449 ~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 449 TVNLEGNPLSERTLQALREI 468 (788)
T ss_pred eEECCCCCCCchHHHHHHHH
Confidence 99999999999988877443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=9.8e-19 Score=203.43 Aligned_cols=203 Identities=22% Similarity=0.394 Sum_probs=102.8
Q ss_pred CCccEEEccCCcccCCCCCCCCCCCccEEeccCccCcccCCCCcccccccccccccCCCCCCchhhcccccceeeccccc
Q 002574 538 SEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWN 617 (906)
Q Consensus 538 ~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ls~n 617 (906)
.+...|+++++.++. +|..+ ...++.|++++|.++........+|+.|++++|++. .+|..+. ..|+.|++++|
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~I-p~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACI-PEQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATLP---DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCc-CCccc-ccCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhhh---ccccEEECcCC
Confidence 456778888887773 44432 136777777777776433333456666666666655 4454332 24555556666
Q ss_pred cccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEEECcCCcccccccc
Q 002574 618 QLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPC 697 (906)
Q Consensus 618 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 697 (906)
.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++. +|.
T Consensus 252 ~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~ 321 (754)
T PRK15370 252 RIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPE 321 (754)
T ss_pred ccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCc
Confidence 555 3343332 34555555555555 3444332 345555555555553 232221 245555555555552 333
Q ss_pred ccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcCC
Q 002574 698 SLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFS 765 (906)
Q Consensus 698 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 765 (906)
.+ .++|+.|++++|.++ .+|..+ .++|+.|++++|++. .+|..+ .++|+.|++++|+++
T Consensus 322 ~l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 322 TL--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT 380 (754)
T ss_pred cc--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence 22 134555555555554 344433 235555555555554 233333 134555555555554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=1.9e-18 Score=200.98 Aligned_cols=281 Identities=26% Similarity=0.425 Sum_probs=187.7
Q ss_pred ccEEEccCCCccCCCChhhhhhcCCCccEEEccCCcccCCCCCCCCCCCccEEeccCccCcccCCCCccccccccccccc
Q 002574 514 LTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNR 593 (906)
Q Consensus 514 L~~L~l~~~~~~~~~p~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~ 593 (906)
...|++++++++ .+|.. .++.++.|++++|.++. +|.... .+|++|++++|.+++.......+|+.|++++|+
T Consensus 180 ~~~L~L~~~~Lt-sLP~~----Ip~~L~~L~Ls~N~Lts-LP~~l~-~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~ 252 (754)
T PRK15370 180 KTELRLKILGLT-TIPAC----IPEQITTLILDNNELKS-LPENLQ-GNIKTLYANSNQLTSIPATLPDTIQEMELSINR 252 (754)
T ss_pred ceEEEeCCCCcC-cCCcc----cccCCcEEEecCCCCCc-CChhhc-cCCCEEECCCCccccCChhhhccccEEECcCCc
Confidence 345555555544 23431 23457777777777763 333322 367777777777764322335577888888888
Q ss_pred CCCCCCchhhcccccceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCc
Q 002574 594 FSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPS 673 (906)
Q Consensus 594 l~~~~p~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~ 673 (906)
+. .+|..+. .+|+.|++++|+++. +|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++. +|.
T Consensus 253 L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~ 321 (754)
T PRK15370 253 IT-ELPERLP---SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPE 321 (754)
T ss_pred cC-cCChhHh---CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCc
Confidence 77 6776654 478888999888884 565553 589999999999884 555442 478899999999985 454
Q ss_pred CCCCCCCCCEEECcCCccccccccccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCC
Q 002574 674 SFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQN 753 (906)
Q Consensus 674 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 753 (906)
.+. ++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+ .++|++|++++|+++ .+|+.+. ..
T Consensus 322 ~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt-~LP~~l~--~s 389 (754)
T PRK15370 322 TLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALT-NLPENLP--AA 389 (754)
T ss_pred ccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCC-CCCHhHH--HH
Confidence 433 689999999999884 676653 78999999999998 688765 468999999999998 4566553 36
Q ss_pred CCEEeCCCCcCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCC
Q 002574 754 LHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSAL 833 (906)
Q Consensus 754 L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L 833 (906)
|+.|++++|+++ .+|..+.++... .+.+..|++.+|.++. ..+.+|
T Consensus 390 L~~LdLs~N~L~-~LP~sl~~~~~~---------------------------~~~l~~L~L~~Npls~------~tl~~L 435 (754)
T PRK15370 390 LQIMQASRNNLV-RLPESLPHFRGE---------------------------GPQPTRIIVEYNPFSE------RTIQNM 435 (754)
T ss_pred HHHHhhccCCcc-cCchhHHHHhhc---------------------------CCCccEEEeeCCCccH------HHHHHH
Confidence 889999999987 667655443322 2344788899998872 233344
Q ss_pred CEEeCcCCcccc-cccccccCCCCCCe
Q 002574 834 HILNLSHNQLSG-AIPQSLSSLASLSK 859 (906)
Q Consensus 834 ~~L~Ls~N~l~~-~ip~~l~~l~~L~~ 859 (906)
+.| ++.+...| .++..+...+.++.
T Consensus 436 ~~L-l~s~~~~gp~i~~~~~~~~~l~~ 461 (754)
T PRK15370 436 QRL-MSSVGYQGPRVLFAMGDFSIVRV 461 (754)
T ss_pred HHh-hhcccccCCcccccccccccccc
Confidence 444 33444433 33444444444443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=2.2e-18 Score=187.32 Aligned_cols=269 Identities=26% Similarity=0.243 Sum_probs=129.7
Q ss_pred EEeCCCCCCCCCCCChhhhcCCCCCeeeccCCcCccC----CCcCcCCCCCCcEEEccCCCCCCCcCCccccccchhhhc
Q 002574 133 TLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGE----IPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLS 208 (906)
Q Consensus 133 ~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~l~ 208 (906)
.|+|..+.+++...+..+..+.+|++|+++++.+++. ++..+...+.|++|+++++.+...+... ......+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~---~~~~~~l~ 78 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGL---QSLLQGLT 78 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHH---HHHHHHHH
Confidence 4677777777555677777788888888888877532 4555666677777777766554211100 01112244
Q ss_pred CCCCCcEEECCCccCCCCCcchHHHhcCCCCCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCCChhhhhcC-C
Q 002574 209 GLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSL-T 287 (906)
Q Consensus 209 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l-~ 287 (906)
++++|++|++++|.+..........+...++|++|++++|++.+... ..+...+..+ +
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~---------------------~~l~~~l~~~~~ 137 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL---------------------RLLAKGLKDLPP 137 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH---------------------HHHHHHHHhCCC
Confidence 45566666665555543322222211111334444444444332110 0112223333 4
Q ss_pred CCCEEEeecccccc----cCchhhcCCCCCCeEeCCCCCCCCCC----cchhhhcCCCCCEEEccCCcCCcccccccccC
Q 002574 288 SLTKLYLRWNFFTG----HIPNEFANLKLLEVLDLSNNLDLGGQ----LPKLFGILRRLKSLDLSANNLNGEVHEFFDGF 359 (906)
Q Consensus 288 ~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~L~~n~~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 359 (906)
+|+.|++++|.+++ .++..+..+++|++|++++| .+.+. ++..+..+++|++|++++|.+++.....+...
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 55555555555442 12223444455555555555 44421 12223344456666666555544333322222
Q ss_pred CCCCCCccEEECcCCCCCCccchhcc-----CCCCCceeeccCccccC----CCCccCCCCCCCCEEeCcCccCCc
Q 002574 360 SGRPNNLEYLDLSSNSLEGELPKSLG-----NLKNLQYLRLSGNSFWG----SIPSSIGNLSSLRKLDLSYNGMNG 426 (906)
Q Consensus 360 ~~~~~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~~~~ 426 (906)
....++|++|++++|.+++.....+. ..+.|++|++++|.++. .+...+..+++|+.+++++|.++.
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 22233566666666655532222221 12455566665555541 122233444566666666666653
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=8.8e-18 Score=182.66 Aligned_cols=115 Identities=24% Similarity=0.274 Sum_probs=47.5
Q ss_pred ccCCCCccEEeCCCCcccccCCcCCCCCCC---CCEEECcCCcccc----ccccccccC-CCCCEEEccCCcCcccccHH
Q 002574 651 WYHSQMFWGIDISNNSLTGSIPSSFGSLRS---LSVLLLSNNNLSG----GIPCSLQNC-TGLTSIDLGGNQLSGSLPLW 722 (906)
Q Consensus 651 l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~ 722 (906)
+..+++|+.|++++|.+.+..+..+..+.. |+.|++++|++.+ .+...+..+ ++|+.|++++|.+++..+..
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 334445555555555444333332322222 5555555554441 112223333 45555555555544221111
Q ss_pred HH---hcCCCCcEEEccCCccccc----cCccccCCCCCCEEeCCCCcCC
Q 002574 723 IS---ENLSSFFMLRLRSNLLSGD----IPQRLCNLQNLHIIDLSHNNFS 765 (906)
Q Consensus 723 ~~---~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 765 (906)
+. ..+++|++|++++|.+++. ++..+..+++|+.|++++|.++
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 11 1134455555555554421 1222333345555555555544
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=2.7e-18 Score=153.52 Aligned_cols=179 Identities=28% Similarity=0.492 Sum_probs=103.3
Q ss_pred ccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEcc
Q 002574 657 FWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLR 736 (906)
Q Consensus 657 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~ 736 (906)
.+.|.+|+|+++ .+|..++.+.+|+.|++.+|+++ .+|.++..+++|+.|+++-|++. .+|..++. ++.|+.|||.
T Consensus 35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs-~p~levldlt 110 (264)
T KOG0617|consen 35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS-FPALEVLDLT 110 (264)
T ss_pred hhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC-Cchhhhhhcc
Confidence 333344444443 23333444445555555555544 34444555555555555555544 44444443 5555555555
Q ss_pred CCcccc-ccCccccCCCCCCEEeCCCCcCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcC
Q 002574 737 SNLLSG-DIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLS 815 (906)
Q Consensus 737 ~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs 815 (906)
.|.+.. .+|..|..++.|+.|.+++|.|. .+|..+++++.| +.|.+.
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l-------------------------------qil~lr 158 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL-------------------------------QILSLR 158 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce-------------------------------eEEeec
Confidence 554432 35666666666777777777765 666666666666 567777
Q ss_pred CCcccccCChhhhccCCCCEEeCcCCcccccccccccCCC---CCCeEeCcCCcccccCCC
Q 002574 816 WNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLA---SLSKLNLSFNNLAGKIPS 873 (906)
Q Consensus 816 ~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~---~L~~L~ls~N~l~g~iP~ 873 (906)
.|.+- ..|.+++.++.|+.|.+.+|+++ .+|..++++. +=+.+.+.+|+...+|.+
T Consensus 159 dndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 159 DNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred cCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 77766 56777777778888888888777 5566666543 234556677777666643
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=1.2e-17 Score=149.40 Aligned_cols=183 Identities=27% Similarity=0.443 Sum_probs=120.8
Q ss_pred CCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCCEE
Q 002574 629 NLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSI 708 (906)
Q Consensus 629 ~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 708 (906)
.+...+.|.+++|+++ .+|..+..+.+|+.|++++|++. .+|..++++++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3455566666666666 45555666666666666666666 45666677777777777777766 667777777777777
Q ss_pred EccCCcCcc-cccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcCCCCCCcccccccccccCCCccch
Q 002574 709 DLGGNQLSG-SLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVF 787 (906)
Q Consensus 709 ~L~~N~l~~-~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~ 787 (906)
|+.+|.+.. .+|..++. ++.|+.|.|++|.+. .+|++++++++|+.|.+.+|.+. .+|..++.++.|
T Consensus 108 dltynnl~e~~lpgnff~-m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~l--------- 175 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFY-MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRL--------- 175 (264)
T ss_pred hccccccccccCCcchhH-HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHH---------
Confidence 777776653 45665554 677777777777776 66777777777777777777776 677777777766
Q ss_pred heeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCC---CEEeCcCCcccccccc
Q 002574 788 QQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSAL---HILNLSHNQLSGAIPQ 849 (906)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L---~~L~Ls~N~l~~~ip~ 849 (906)
++|.+.+|+++ .+|.+++++.-+ +.+.+.+|.....|.+
T Consensus 176 ----------------------relhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 176 ----------------------RELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred ----------------------HHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 67777777777 566666665432 3445556655444433
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.44 E-value=4.5e-13 Score=156.21 Aligned_cols=129 Identities=36% Similarity=0.623 Sum_probs=112.1
Q ss_pred CCcHHHHHHHHHHHhhCCCCCCCCCCCCCCCCC----CccceEecC--CCC--cEEEEecCCcccccCCCcCCCcCCCCc
Q 002574 44 LCLDAEREGLLAFKESLTDPSGRLSSWVGQDCC----KWNGVYCNN--QSG--HVTQLNLRNPYQLINGGVGDSTAYKGS 115 (906)
Q Consensus 44 ~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~c----~w~gv~C~~--~~~--~v~~L~L~~~~~~~~~~~~~~~~~~~~ 115 (906)
.+.++|.+||+++|+++.++.. .+|.+..|| .|.||.|.. ..+ +|+.|+|+++
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n----------------- 428 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ----------------- 428 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCC-----------------
Confidence 4567799999999999976542 489776553 799999952 222 5999999987
Q ss_pred cccccccccccCCCCCCEEeCCCCCCCCCCCChhhhcCCCCCeeeccCCcCccCCCcCcCCCCCCcEEEccCCCCCC
Q 002574 116 CLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSS 192 (906)
Q Consensus 116 ~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~ 192 (906)
.+.|.+|+.++++++|++|+|++|.+.+. +|..++.+++|++|+|++|+++|.+|..++++++|++|++++|.+.+
T Consensus 429 ~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 429 GLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred CccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccc
Confidence 78899999999999999999999999987 99999999999999999999999999999999999999999887754
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.31 E-value=2.7e-12 Score=149.75 Aligned_cols=115 Identities=37% Similarity=0.622 Sum_probs=72.8
Q ss_pred CCEEeCCCCcCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCC
Q 002574 754 LHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSAL 833 (906)
Q Consensus 754 L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L 833 (906)
++.|+|++|.+.|.+|..+++++.| +.|+|++|.++|.+|..++++++|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L-------------------------------~~L~Ls~N~l~g~iP~~~~~l~~L 468 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHL-------------------------------QSINLSGNSIRGNIPPSLGSITSL 468 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCC-------------------------------CEEECCCCcccCcCChHHhCCCCC
Confidence 4555666666666666665555555 556666666666666666666666
Q ss_pred CEEeCcCCcccccccccccCCCCCCeEeCcCCcccccCCCC-C----CCCCCCccCCCCCCCCCCCCCCCCC
Q 002574 834 HILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSL-P----NFNDPSIYEGNPLLCGAPLPTKCPG 900 (906)
Q Consensus 834 ~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~----~~~~~~~~~gn~~lc~~~l~~~c~~ 900 (906)
+.|||++|+++|.+|+.+.++++|++|++++|+++|.+|.. . ...... +.+|+++||.|-...|..
T Consensus 469 ~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~-~~~N~~lc~~p~l~~C~~ 539 (623)
T PLN03150 469 EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN-FTDNAGLCGIPGLRACGP 539 (623)
T ss_pred CEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEE-ecCCccccCCCCCCCCcc
Confidence 66666666666666666666666666666666666666654 1 112233 788999998875567853
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.27 E-value=1.4e-13 Score=146.05 Aligned_cols=202 Identities=24% Similarity=0.388 Sum_probs=160.6
Q ss_pred CCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCCEEE
Q 002574 630 LEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSID 709 (906)
Q Consensus 630 l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 709 (906)
+..-...|++.|++. .+|..+..+..|+.+.+.+|.+. .+|..++++..|++|+|+.|+++ .+|..++.|+ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 444567888999988 78888888888999999999888 67788888999999999999988 6777777775 88889
Q ss_pred ccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcCCCCCCcccccccccccCCCccchhe
Q 002574 710 LGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQ 789 (906)
Q Consensus 710 L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~ 789 (906)
+++|+++ .+|..++ ....|..|+.+.|.+. .+|..++++.+|+.|++..|++. .+|+.+..|+
T Consensus 150 ~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp------------- 212 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP------------- 212 (722)
T ss_pred EecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-------------
Confidence 9999988 8888888 5888888888888887 57778888888888888888887 6676665333
Q ss_pred eeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCCCEEeCcCCcccccccccc---cCCCCCCeEeCcCCc
Q 002574 790 LIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSL---SSLASLSKLNLSFNN 866 (906)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l---~~l~~L~~L~ls~N~ 866 (906)
|..||+|+|+++ .||-.|.+|+.|++|-|.+|.+. .-|..+ +...=.++|+...++
T Consensus 213 -------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 213 -------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 257899999998 78889999999999999999887 445544 334556788888875
Q ss_pred ccccCCCC
Q 002574 867 LAGKIPSL 874 (906)
Q Consensus 867 l~g~iP~~ 874 (906)
+|.-+.+
T Consensus 272 -~~~a~~~ 278 (722)
T KOG0532|consen 272 -SGGALDL 278 (722)
T ss_pred -ccCCccc
Confidence 4444443
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=5e-13 Score=141.96 Aligned_cols=146 Identities=30% Similarity=0.504 Sum_probs=67.8
Q ss_pred CCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCC
Q 002574 624 PSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCT 703 (906)
Q Consensus 624 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 703 (906)
|..++.+..|+.+.+..|.+. .+|.++.++..|+++||+.|+++ ..|..++.++ |+.|.+++|+++ .+|..++...
T Consensus 91 p~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~ 166 (722)
T KOG0532|consen 91 PEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLP 166 (722)
T ss_pred chHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccch
Confidence 333444444444444444443 34444444444444444444444 3333344332 445555555544 4444444444
Q ss_pred CCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcCCCCCCccccccccc
Q 002574 704 GLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSAL 778 (906)
Q Consensus 704 ~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L 778 (906)
.|..||.+.|.+. .+|..+.. +.+|+.|.++.|++. .+|++++.+ .|..||+|+|+++ .||-+|.+|+.|
T Consensus 167 tl~~ld~s~nei~-slpsql~~-l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~L 236 (722)
T KOG0532|consen 167 TLAHLDVSKNEIQ-SLPSQLGY-LTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHL 236 (722)
T ss_pred hHHHhhhhhhhhh-hchHHhhh-HHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhh
Confidence 5555555555544 44444443 455555555555544 334444422 2444555555554 455555544444
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.20 E-value=2e-11 Score=136.48 Aligned_cols=152 Identities=40% Similarity=0.586 Sum_probs=68.7
Q ss_pred CCCEEECcCCccccccccccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeC
Q 002574 680 SLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDL 759 (906)
Q Consensus 680 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 759 (906)
+|+.|++++|.+. .+|..+..+++|+.|++++|++. .+|..... .+.|+.|++++|++. .+|..+.....|+++++
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~-~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSN-LSNLNNLDLSGNKIS-DLPPEIELLSALEELDL 216 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhh-hhhhhheeccCCccc-cCchhhhhhhhhhhhhh
Confidence 4455555555444 33333444555555555555554 34433322 445555555555554 33333333444555555
Q ss_pred CCCcCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCCCEEeCc
Q 002574 760 SHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLS 839 (906)
Q Consensus 760 s~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls 839 (906)
++|++. .++..+.++..+ ..+.+++|++. .++..++++++++.|+++
T Consensus 217 ~~N~~~-~~~~~~~~~~~l-------------------------------~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 217 SNNSII-ELLSSLSNLKNL-------------------------------SGLELSNNKLE-DLPESIGNLSNLETLDLS 263 (394)
T ss_pred cCCcce-ecchhhhhcccc-------------------------------cccccCCceee-eccchhccccccceeccc
Confidence 555322 333333333333 33444444444 223444555555555555
Q ss_pred CCcccccccccccCCCCCCeEeCcCCccccc
Q 002574 840 HNQLSGAIPQSLSSLASLSKLNLSFNNLAGK 870 (906)
Q Consensus 840 ~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 870 (906)
+|.++. ++. +..+.+++.|++++|.++..
T Consensus 264 ~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 264 NNQISS-ISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccccc-ccc-ccccCccCEEeccCcccccc
Confidence 555542 222 44455555555555544433
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=7.2e-12 Score=126.08 Aligned_cols=116 Identities=26% Similarity=0.340 Sum_probs=58.1
Q ss_pred hcCCCCCEEEeecccccc----cCchhhcCCCCCCeEeCCCCCCCCCC----cchhhhcCCCCCEEEccCCcCCcccccc
Q 002574 284 FSLTSLTKLYLRWNFFTG----HIPNEFANLKLLEVLDLSNNLDLGGQ----LPKLFGILRRLKSLDLSANNLNGEVHEF 355 (906)
Q Consensus 284 ~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~L~~n~~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 355 (906)
...+.|+.+.+..|.+.. .+...+..+++|++|||.+| -++.. +...+..+++|+.|++++|.+.......
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 334455555555554431 11223445555555555555 33221 2233444556666666666554433222
Q ss_pred -cccCCCCCCCccEEECcCCCCCCc----cchhccCCCCCceeeccCccc
Q 002574 356 -FDGFSGRPNNLEYLDLSSNSLEGE----LPKSLGNLKNLQYLRLSGNSF 400 (906)
Q Consensus 356 -~~~l~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l 400 (906)
+..+....|.|+.|.+.+|.++.. +...+...+.|+.|+|++|++
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 122223344777777777776632 222344567777788887777
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=8.9e-11 Score=131.35 Aligned_cols=183 Identities=37% Similarity=0.545 Sum_probs=124.3
Q ss_pred CCCCCCcEEEccCCcCcccCCCCccCCC-CccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCC
Q 002574 628 CNLEDLQILSIRSNKLSGEFPNCWYHSQ-MFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLT 706 (906)
Q Consensus 628 ~~l~~L~~L~Ls~n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 706 (906)
...+.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..++.+++|+.|++++|++. .+|......+.|+
T Consensus 113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN 189 (394)
T ss_pred hcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhh
Confidence 34466777777777777 4455455553 7777777777776 33345677778888888888877 4555545677788
Q ss_pred EEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcCCCCCCcccccccccccCCCccc
Q 002574 707 SIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEV 786 (906)
Q Consensus 707 ~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~ 786 (906)
.|++++|++. .+|..+.. ...|+++.+++|+.. .++..+..+.++..+.+++|++. .++..++.++.+
T Consensus 190 ~L~ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l-------- 257 (394)
T COG4886 190 NLDLSGNKIS-DLPPEIEL-LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNL-------- 257 (394)
T ss_pred heeccCCccc-cCchhhhh-hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcccccc--------
Confidence 8888888877 67766532 555788888888543 34556677777777777777775 335555555555
Q ss_pred hheeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCCCEEeCcCCccccccccc
Q 002574 787 FQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQS 850 (906)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 850 (906)
+.|++++|.++. ++. ++.+.+++.|++++|.++...|..
T Consensus 258 -----------------------~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 258 -----------------------ETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred -----------------------ceeccccccccc-ccc-ccccCccCEEeccCccccccchhh
Confidence 678888888873 343 778888888888888777655443
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.08 E-value=1e-11 Score=124.94 Aligned_cols=265 Identities=26% Similarity=0.259 Sum_probs=143.9
Q ss_pred cccccccCCCCCCEEeCCCCCCCCC---CCChhhhcCCCCCeeeccCCcCcc----CCCcCcCCCCCCcEEEccCCCCCC
Q 002574 120 KINPSLLHLKYLDTLDLSLNDFEGA---EIPEYFGQLKNLRYLNLSFSSFSG----EIPPQLGSLSSLQYLDLYADSFSS 192 (906)
Q Consensus 120 ~l~~~l~~l~~L~~L~Ls~n~~~~~---~lp~~l~~l~~L~~L~Ls~n~~~~----~~p~~l~~l~~L~~L~ls~n~~~~ 192 (906)
.+-+.+..+..+++++||+|.|... .+-..+.+.++|+..++++- ++| .+|+.+..+
T Consensus 21 ~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l--------------- 84 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKML--------------- 84 (382)
T ss_pred hHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHH---------------
Confidence 3445567788899999999988654 13345667778888888764 333 334332110
Q ss_pred CcCCccccccchhhhcCCCCCcEEECCCccCCCCCcc-hHHHhcCCCCCcEEEccCCcCCCCCCccCcCCCCcccEEECC
Q 002574 193 NSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGAD-WLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLS 271 (906)
Q Consensus 193 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls 271 (906)
.+.+..+++|+++|||.|-+...+.. +-.-+..+..|++|+|.+|.+....... ++ ..|..|.
T Consensus 85 -----------~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~-l~--~al~~l~-- 148 (382)
T KOG1909|consen 85 -----------SKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGR-LG--RALFELA-- 148 (382)
T ss_pred -----------HHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHH-HH--HHHHHHH--
Confidence 01133444555555555555443332 2234455666777777766654432210 00 0111111
Q ss_pred CCcCCCCChhhhhcCCCCCEEEeeccccccc----CchhhcCCCCCCeEeCCCCCCCCC----CcchhhhcCCCCCEEEc
Q 002574 272 ENSFNSAIPPWLFSLTSLTKLYLRWNFFTGH----IPNEFANLKLLEVLDLSNNLDLGG----QLPKLFGILRRLKSLDL 343 (906)
Q Consensus 272 ~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~L~~n~~~~~----~~~~~l~~l~~L~~L~L 343 (906)
.+ ...+.-++|+++...+|++... +...|...+.|+.+.+..| .+.. .+...+..+++|+.|||
T Consensus 149 ~~-------kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl 220 (382)
T KOG1909|consen 149 VN-------KKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDL 220 (382)
T ss_pred HH-------hccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeec
Confidence 11 1123346788888887776432 2345677789999999988 4432 12345677888888888
Q ss_pred cCCcCCcccccccccCCCCCCCccEEECcCCCCCCccchhcc-----CCCCCceeeccCccccCC----CCccCCCCCCC
Q 002574 344 SANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLG-----NLKNLQYLRLSGNSFWGS----IPSSIGNLSSL 414 (906)
Q Consensus 344 s~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L 414 (906)
.+|-++......++.....+++|++|++++|.+...-..++. ..++|+.|.+.+|.++.. +...+...+.|
T Consensus 221 ~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL 300 (382)
T KOG1909|consen 221 RDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDL 300 (382)
T ss_pred ccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhh
Confidence 888877554444444334444677777777766644333221 235555555555554421 11122334444
Q ss_pred CEEeCcCccC
Q 002574 415 RKLDLSYNGM 424 (906)
Q Consensus 415 ~~L~L~~n~~ 424 (906)
..|+|++|++
T Consensus 301 ~kLnLngN~l 310 (382)
T KOG1909|consen 301 EKLNLNGNRL 310 (382)
T ss_pred HHhcCCcccc
Confidence 4444444444
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.1e-10 Score=118.76 Aligned_cols=208 Identities=23% Similarity=0.209 Sum_probs=103.5
Q ss_pred CCCCCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCC--ChhhhhcCCCCCEEEeecccccccCchh-hcCCCC
Q 002574 236 MLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSA--IPPWLFSLTSLTKLYLRWNFFTGHIPNE-FANLKL 312 (906)
Q Consensus 236 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~--~p~~l~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~ 312 (906)
++.+|+++.|.++.+...+.......+++++.||||.|-+..- +-....++++|+.|+++.|.+....... -..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3455555555555555444323345667777777777765532 2223456777777777777765322211 124556
Q ss_pred CCeEeCCCCCCCCCC-cchhhhcCCCCCEEEccCCcCCcccccccccCCCCCCCccEEECcCCCCCCccc--hhccCCCC
Q 002574 313 LEVLDLSNNLDLGGQ-LPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELP--KSLGNLKN 389 (906)
Q Consensus 313 L~~L~L~~n~~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~p--~~l~~l~~ 389 (906)
|+.|.++.| .++.. +...+..+|+|+.|++..|........... .++.|++|+|++|.+.. .+ ...+.++.
T Consensus 199 lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~----i~~~L~~LdLs~N~li~-~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 199 LKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK----ILQTLQELDLSNNNLID-FDQGYKVGTLPG 272 (505)
T ss_pred hheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh----hhhHHhhccccCCcccc-cccccccccccc
Confidence 666666666 44321 222334566666666666642111111111 12256666666666542 22 23455666
Q ss_pred CceeeccCccccCC-CCcc-----CCCCCCCCEEeCcCccCCc-ccccchhccccCceeecCCCCcc
Q 002574 390 LQYLRLSGNSFWGS-IPSS-----IGNLSSLRKLDLSYNGMNG-TIPESFGKLSELVDANLLQNSWE 449 (906)
Q Consensus 390 L~~L~L~~n~l~~~-~p~~-----l~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~ 449 (906)
|+.|+++.|.+... .|+. ...+++|+.|++..|++.. ..-..+..+++|+.|.+..|.+.
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 66666666655532 1221 2344556666666665531 01112333344444444444443
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=3.2e-10 Score=117.45 Aligned_cols=142 Identities=25% Similarity=0.198 Sum_probs=69.9
Q ss_pred hcCCCCCcEEECCCccCCCCCcchHHHhcCCCCCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCC-Chhhhhc
Q 002574 207 LSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSA-IPPWLFS 285 (906)
Q Consensus 207 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~-~p~~l~~ 285 (906)
...|++++.|||+.|-+.... .+.+-...+|+|+.|+++.|++........-.-++.|+.|.|+.|.++-. +-..+..
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~-~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWF-PVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhCCcceeecchhhhHHhHH-HHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 444555555555555554432 12333455666666666666665544433333455666666666655422 1112234
Q ss_pred CCCCCEEEeecccccccCchhhcCCCCCCeEeCCCCCCCCCCcchhhhcCCCCCEEEccCCcCC
Q 002574 286 LTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLN 349 (906)
Q Consensus 286 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 349 (906)
+|+|+.|++..|.....-.....-+..|+.|+|++|..+.-..-...+.++.|+.|+++.+.+.
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcc
Confidence 5666666666664222222233344555666666653222222233445555555555555443
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=2.9e-10 Score=111.58 Aligned_cols=136 Identities=26% Similarity=0.326 Sum_probs=96.9
Q ss_pred ccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcCCCCCCcccccccc
Q 002574 698 SLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSA 777 (906)
Q Consensus 698 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~ 777 (906)
.+.....|+++|+++|.|+ .+...+.- ++.++.|++++|.+... +.+..+++|+.||||+|.++ .+...-
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL-~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh----- 348 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKL-APKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWH----- 348 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhh-ccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhH-----
Confidence 3444567788888888877 56665554 77888888888887733 23777888888999888876 222111
Q ss_pred cccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCCCEEeCcCCcccccc-cccccCCCC
Q 002574 778 LVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAI-PQSLSSLAS 856 (906)
Q Consensus 778 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~ 856 (906)
..+.+.+.|.|++|.+.. -..++++-+|..||++.|+|...- -.++++++-
T Consensus 349 --------------------------~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPC 400 (490)
T KOG1259|consen 349 --------------------------LKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPC 400 (490)
T ss_pred --------------------------hhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccH
Confidence 112334778899988863 245788889999999999887432 356788999
Q ss_pred CCeEeCcCCcccccC
Q 002574 857 LSKLNLSFNNLAGKI 871 (906)
Q Consensus 857 L~~L~ls~N~l~g~i 871 (906)
|+.+-+.+||+.+..
T Consensus 401 LE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 401 LETLRLTGNPLAGSV 415 (490)
T ss_pred HHHHhhcCCCccccc
Confidence 999999999998543
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=1.1e-09 Score=104.11 Aligned_cols=82 Identities=29% Similarity=0.318 Sum_probs=14.3
Q ss_pred CCCCcEEEccCCcCcccCCCCcc-CCCCccEEeCCCCcccccCCcCCCCCCCCCEEECcCCcccccccccc-ccCCCCCE
Q 002574 630 LEDLQILSIRSNKLSGEFPNCWY-HSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSL-QNCTGLTS 707 (906)
Q Consensus 630 l~~L~~L~Ls~n~l~~~~p~~l~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~ 707 (906)
...+++|+|.+|.|+. +. .+. .+.+|+.|++++|.|+.. +.+..++.|+.|++++|+++.. ...+ ..+++|++
T Consensus 18 ~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred cccccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence 3344555555555542 11 122 234444444444444432 1244444455555555554422 1122 23444455
Q ss_pred EEccCCcCc
Q 002574 708 IDLGGNQLS 716 (906)
Q Consensus 708 L~L~~N~l~ 716 (906)
|++++|++.
T Consensus 93 L~L~~N~I~ 101 (175)
T PF14580_consen 93 LYLSNNKIS 101 (175)
T ss_dssp EE-TTS---
T ss_pred EECcCCcCC
Confidence 555444443
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=4.8e-10 Score=110.11 Aligned_cols=131 Identities=31% Similarity=0.347 Sum_probs=64.2
Q ss_pred cCCCCCEEEccCCcCCcccccccccCCCCCCCccEEECcCCCCCCccchhccCCCCCceeeccCccccCCCCccCCCCCC
Q 002574 334 ILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSS 413 (906)
Q Consensus 334 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 413 (906)
..+.|+++|+++|.|+.. .+...-.+ .++.|++++|.+.. + ..++.+++|+.|||++|.++.. ..+-..+-+
T Consensus 282 TWq~LtelDLS~N~I~~i-DESvKL~P----kir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGN 353 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQI-DESVKLAP----KLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGN 353 (490)
T ss_pred hHhhhhhccccccchhhh-hhhhhhcc----ceeEEeccccceee-e-hhhhhcccceEeecccchhHhh-hhhHhhhcC
Confidence 344555555555555422 22222222 55555555555542 1 2255555555555555555422 122233445
Q ss_pred CCEEeCcCccCCcccccchhccccCceeecCCCCccCCCChHHhhccccccEeecCCCCCc
Q 002574 414 LRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTK 474 (906)
Q Consensus 414 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~ 474 (906)
+++|.|++|.+. .-..+.++-+|..|++++|++...-....+++++-|+.+.+.+|++.
T Consensus 354 IKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 354 IKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred EeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 555555555552 22334455555555555555555444445555555555555555443
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=2.7e-09 Score=101.54 Aligned_cols=104 Identities=27% Similarity=0.290 Sum_probs=27.4
Q ss_pred CCCCCcEEECCCccCCCCCcchHHHhc-CCCCCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCCChhhh-hcC
Q 002574 209 GLSSLKLLNLGFVKLDHVGADWLQAVN-MLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWL-FSL 286 (906)
Q Consensus 209 ~l~~L~~L~l~~n~l~~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l-~~l 286 (906)
+..++++|++++|.++.+. .++ .+.+|+.|++++|.++.+.. +..++.|++|++++|+++... ..+ ..+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-----~L~~~l~~L~~L~Ls~N~I~~l~~---l~~L~~L~~L~L~~N~I~~i~-~~l~~~l 87 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-----NLGATLDKLEVLDLSNNQITKLEG---LPGLPRLKTLDLSNNRISSIS-EGLDKNL 87 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--TT-------TT--EEE--SS---S-C-HHHHHH-
T ss_pred ccccccccccccccccccc-----chhhhhcCCCEEECCCCCCccccC---ccChhhhhhcccCCCCCCccc-cchHHhC
Confidence 3344555555555555432 233 34566666666666665543 555666777777777666432 233 346
Q ss_pred CCCCEEEeecccccccC-chhhcCCCCCCeEeCCCC
Q 002574 287 TSLTKLYLRWNFFTGHI-PNEFANLKLLEVLDLSNN 321 (906)
Q Consensus 287 ~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~L~~n 321 (906)
++|++|++++|++...- -..+..+++|++|++.+|
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 67777777776665321 133455556666666655
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=7.5e-09 Score=123.40 Aligned_cols=162 Identities=27% Similarity=0.296 Sum_probs=104.9
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCChhhhcCCCCCeeeccCCcCccCCCcCcCCCCCCcEEEccCCCCCCCcCCccccccc
Q 002574 124 SLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQN 203 (906)
Q Consensus 124 ~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~ 203 (906)
.|..++.|++|||++|.-.+. +|+.++.|-+||||+++++.+. .+|..+++|++|.+|++..+......
T Consensus 566 ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~--------- 634 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI--------- 634 (889)
T ss_pred HHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc---------
Confidence 467799999999999765554 9999999999999999999998 89999999999999999866432211
Q ss_pred hhhhcCCCCCcEEECCCccCCCCCcchHHHhcCCCCCcEEEccCCcCCCCCCccCcCCCCccc----EEECCCCcCCCCC
Q 002574 204 LNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSIS----VLDLSENSFNSAI 279 (906)
Q Consensus 204 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~----~L~Ls~n~~~~~~ 279 (906)
......|.+|++|.+..... .........+..+.+|+.+........... .+..++.|. .+.+.++... ..
T Consensus 635 ~~i~~~L~~Lr~L~l~~s~~-~~~~~~l~el~~Le~L~~ls~~~~s~~~~e---~l~~~~~L~~~~~~l~~~~~~~~-~~ 709 (889)
T KOG4658|consen 635 PGILLELQSLRVLRLPRSAL-SNDKLLLKELENLEHLENLSITISSVLLLE---DLLGMTRLRSLLQSLSIEGCSKR-TL 709 (889)
T ss_pred cchhhhcccccEEEeecccc-ccchhhHHhhhcccchhhheeecchhHhHh---hhhhhHHHHHHhHhhhhcccccc-ee
Confidence 11255688999998877652 222223445566666666666444331111 122222222 2222222222 23
Q ss_pred hhhhhcCCCCCEEEeecccccc
Q 002574 280 PPWLFSLTSLTKLYLRWNFFTG 301 (906)
Q Consensus 280 p~~l~~l~~L~~L~L~~n~~~~ 301 (906)
+..+..+.+|+.|.+.++.+..
T Consensus 710 ~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 710 ISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred ecccccccCcceEEEEcCCCch
Confidence 4456677777777777777653
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=6.9e-09 Score=80.98 Aligned_cols=61 Identities=44% Similarity=0.613 Sum_probs=56.6
Q ss_pred CcccEEEcCCCcccccCChhhhccCCCCEEeCcCCcccccccccccCCCCCCeEeCcCCcc
Q 002574 807 ADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNL 867 (906)
Q Consensus 807 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l 867 (906)
++|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3568999999999977778999999999999999999988888999999999999999986
No 39
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.66 E-value=3e-08 Score=70.46 Aligned_cols=38 Identities=58% Similarity=1.124 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhCC-CCCCCCCCCCC---CCCCCccceEec
Q 002574 47 DAEREGLLAFKESLT-DPSGRLSSWVG---QDCCKWNGVYCN 84 (906)
Q Consensus 47 ~~~~~~ll~~k~~~~-~~~~~l~~W~~---~~~c~w~gv~C~ 84 (906)
++|++||++||+++. +|.+.+.+|+. .+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 579999999999997 57789999943 699999999995
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.64 E-value=4.5e-09 Score=117.62 Aligned_cols=247 Identities=30% Similarity=0.299 Sum_probs=112.4
Q ss_pred cCCCCCeeeccCCcCccCCCcCcCCCCCCcEEEccCCCCCCCcCCccccccchhhhcCCCCCcEEECCCccCCCCCcchH
Q 002574 152 QLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWL 231 (906)
Q Consensus 152 ~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 231 (906)
.+..++.+++..|.+. .+-..+..+++|+.|++..|.+..+... +..+++|++|++++|.|+.+.
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i~~~----------l~~~~~L~~L~ls~N~I~~i~---- 134 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKIENL----------LSSLVNLQVLDLSFNKITKLE---- 134 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhcccc----------hhhhhcchheecccccccccc----
Confidence 3444444555555444 2222344555555555555554432211 333444444444444444432
Q ss_pred HHhcCCCCCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCCCh-hhhhcCCCCCEEEeecccccccCchhhcCC
Q 002574 232 QAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIP-PWLFSLTSLTKLYLRWNFFTGHIPNEFANL 310 (906)
Q Consensus 232 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p-~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l 310 (906)
.+..++.|+.|++.+|.++.+.. +..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+...
T Consensus 135 -~l~~l~~L~~L~l~~N~i~~~~~---~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i-------- 201 (414)
T KOG0531|consen 135 -GLSTLTLLKELNLSGNLISDISG---LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI-------- 201 (414)
T ss_pred -chhhccchhhheeccCcchhccC---CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--------
Confidence 33334445555555555544433 3334555555555555443222 1 23344444444444443321
Q ss_pred CCCCeEeCCCCCCCCCCcchhhhcCCCCCEEEccCCcCCcccccccccCCCCCCCccEEECcCCCCCCccchhccCCCCC
Q 002574 311 KLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNL 390 (906)
Q Consensus 311 ~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L 390 (906)
..+..+..+..+++..|.++...+....... .|+.+++++|.+. ..+..+..++.+
T Consensus 202 -------------------~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~----~L~~l~l~~n~i~-~~~~~~~~~~~l 257 (414)
T KOG0531|consen 202 -------------------EGLDLLKKLVLLSLLDNKISKLEGLNELVML----HLRELYLSGNRIS-RSPEGLENLKNL 257 (414)
T ss_pred -------------------cchHHHHHHHHhhcccccceeccCcccchhH----HHHHHhcccCccc-cccccccccccc
Confidence 1122223333334444444332211100000 2566666666665 333445566666
Q ss_pred ceeeccCccccCCCCccCCCCCCCCEEeCcCccCCcc---ccc-chhccccCceeecCCCCccCCC
Q 002574 391 QYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGT---IPE-SFGKLSELVDANLLQNSWEGIL 452 (906)
Q Consensus 391 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~---~~~-~~~~l~~L~~L~l~~n~l~~~~ 452 (906)
..+++.+|++... ..+...+.+..+....+.+... ... .....+.++...+..|......
T Consensus 258 ~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 258 PVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred cccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence 6777776666533 2244445555556666654421 111 1445566666666666665543
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.63 E-value=4.2e-09 Score=117.83 Aligned_cols=222 Identities=26% Similarity=0.290 Sum_probs=106.9
Q ss_pred cccceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEEE
Q 002574 606 MPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLL 685 (906)
Q Consensus 606 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 685 (906)
+.+++.|++.+|.|..+.. .+..+++|++|++++|.|+...+ +..++.|+.|++++|.|+.. ..+..+..|+.++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLD 168 (414)
T ss_pred ccceeeeeccccchhhccc-chhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhccc
Confidence 4455555555555553321 13445555555555555553322 23334455555555555433 2334455555555
Q ss_pred CcCCccccccc-cccccCCCCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCC--CCCEEeCCCC
Q 002574 686 LSNNNLSGGIP-CSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQ--NLHIIDLSHN 762 (906)
Q Consensus 686 Ls~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~Ls~N 762 (906)
+++|++...-+ . ...+.+++.+++++|.+. .+. ++.. +..+..+++..|.++..-+ +..+. .|+.+++++|
T Consensus 169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i~-~~~~-~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n 242 (414)
T KOG0531|consen 169 LSYNRIVDIENDE-LSELISLEELDLGGNSIR-EIE-GLDL-LKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGN 242 (414)
T ss_pred CCcchhhhhhhhh-hhhccchHHHhccCCchh-ccc-chHH-HHHHHHhhcccccceeccC--cccchhHHHHHHhcccC
Confidence 55555553322 1 344555555555555544 111 1111 2333333455554442211 11111 2555555555
Q ss_pred cCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCCCEEeCcCCc
Q 002574 763 NFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQ 842 (906)
Q Consensus 763 ~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~ 842 (906)
++. .++..+.. +.++..||+++|++...- .+.....+..+.++.|.
T Consensus 243 ~i~-~~~~~~~~-------------------------------~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 243 RIS-RSPEGLEN-------------------------------LKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNK 288 (414)
T ss_pred ccc-cccccccc-------------------------------cccccccchhhccccccc--cccccchHHHhccCcch
Confidence 554 22222222 233466777777776432 24555666666666666
Q ss_pred cccc---cccc-ccCCCCCCeEeCcCCcccccCC
Q 002574 843 LSGA---IPQS-LSSLASLSKLNLSFNNLAGKIP 872 (906)
Q Consensus 843 l~~~---ip~~-l~~l~~L~~L~ls~N~l~g~iP 872 (906)
+... .... ......++.+++.+|+.....+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 289 LALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred hcchhhhhccccccccccccccccccCccccccc
Confidence 5521 1111 4556777888888888777665
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.55 E-value=5.7e-08 Score=75.78 Aligned_cols=58 Identities=41% Similarity=0.529 Sum_probs=28.1
Q ss_pred ccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCCEEEccCCc
Q 002574 657 FWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQ 714 (906)
Q Consensus 657 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~ 714 (906)
|++|++++|+++...++.|..+++|++|++++|.+....|..|.++++|+.|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4444444444444444444555555555555555544444445555555555555544
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.55 E-value=7.4e-08 Score=115.06 Aligned_cols=79 Identities=39% Similarity=0.516 Sum_probs=37.1
Q ss_pred CccEEECcCCCCCCccchhccCCCCCceeeccCccccCCCCccCCCCCCCCEEeCcCccCCcccccchhccccCceeecC
Q 002574 365 NLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLL 444 (906)
Q Consensus 365 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 444 (906)
.|+.|||++|.--+.+|..++.+-+|++|++++..+. .+|.+++++..|.+|++..+.....+|.....+.+|++|.+.
T Consensus 572 ~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 572 LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 4444444444333344555555555555555555444 444445555555555554444333333444444444444443
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.6e-09 Score=106.56 Aligned_cols=59 Identities=24% Similarity=0.199 Sum_probs=39.8
Q ss_pred CCCEEeCCCCCCCCCCCChhhhcCCCCCeeeccCCcCccCCCcCcCCCCCCcEEEccCC
Q 002574 130 YLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYAD 188 (906)
Q Consensus 130 ~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ls~n 188 (906)
.|++||||...++...+-..++.+.+|+.|.|.++.+.+.+-..+++-.+|+.|+++.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 47777777777665444455666777777777777777666666666677777777654
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.9e-08 Score=99.15 Aligned_cols=181 Identities=23% Similarity=0.162 Sum_probs=125.0
Q ss_pred CcccEEECCCCcCCCC-ChhhhhcCCCCCEEEeecccccccCchhhcCCCCCCeEeCCCCCCCCCCc-chhhhcCCCCCE
Q 002574 263 TSISVLDLSENSFNSA-IPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQL-PKLFGILRRLKS 340 (906)
Q Consensus 263 ~~L~~L~Ls~n~~~~~-~p~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~l~~l~~L~~ 340 (906)
+.|++||||...++.. +-..+..+.+|+.|.+.++++...+...+++-.+|+.|+++.+..++... .-.+.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3588888888776532 23346778889999999998888888888888899999998886555432 234578889999
Q ss_pred EEccCCcCCcccccccccCCCCCCCccEEECcCCCCC---CccchhccCCCCCceeeccCccc-cCCCCccCCCCCCCCE
Q 002574 341 LDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLE---GELPKSLGNLKNLQYLRLSGNSF-WGSIPSSIGNLSSLRK 416 (906)
Q Consensus 341 L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~ 416 (906)
|++++|.+....-...-. ...++|..|+++++.-. ..+..-...+++|.+|||++|.. +......|.+++.|++
T Consensus 265 LNlsWc~l~~~~Vtv~V~--hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVA--HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred cCchHhhccchhhhHHHh--hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 999998776543221111 11237888899887421 12222345789999999998753 3333345678889999
Q ss_pred EeCcCccCCccccc---chhccccCceeecCCCC
Q 002574 417 LDLSYNGMNGTIPE---SFGKLSELVDANLLQNS 447 (906)
Q Consensus 417 L~L~~n~~~~~~~~---~~~~l~~L~~L~l~~n~ 447 (906)
|.++.|.. .+|+ .+...+.|.+|++.++-
T Consensus 343 lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 343 LSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 99988864 3454 45667889999887754
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.25 E-value=1.7e-08 Score=110.75 Aligned_cols=126 Identities=30% Similarity=0.271 Sum_probs=88.7
Q ss_pred CCCEEEccCCcCcccccHHHHhcCCCCcEEEccCCccccccCccccCCCCCCEEeCCCCcCCCCCCcc-cccccccccCC
Q 002574 704 GLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRC-IGNLSALVYGN 782 (906)
Q Consensus 704 ~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~~l~~L~~~~ 782 (906)
.|.+.+.++|++. .+...+.- ++.++.|+|++|+++..- .+..++.|+.|||++|.+. .+|.- ...+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLql-l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc------- 232 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQL-LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC------- 232 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHH-HHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-------
Confidence 5777778888876 55555543 778888888888887553 6777888888888888886 44421 1111
Q ss_pred CccchheeeeeeecCCCcccccccCcccEEEcCCCcccccCChhhhccCCCCEEeCcCCccccccc-ccccCCCCCCeEe
Q 002574 783 NSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIP-QSLSSLASLSKLN 861 (906)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~L~ 861 (906)
.|..|.+++|.++.. ..+.+|++|+-||+|+|-|++.-. .-+..|.+|..|+
T Consensus 233 -------------------------~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~ 285 (1096)
T KOG1859|consen 233 -------------------------KLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLW 285 (1096)
T ss_pred -------------------------hheeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHh
Confidence 136788888888743 357888888899999988875321 1245567888888
Q ss_pred CcCCccc
Q 002574 862 LSFNNLA 868 (906)
Q Consensus 862 ls~N~l~ 868 (906)
|.+||+.
T Consensus 286 LeGNPl~ 292 (1096)
T KOG1859|consen 286 LEGNPLC 292 (1096)
T ss_pred hcCCccc
Confidence 8888885
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=6.5e-07 Score=88.57 Aligned_cols=62 Identities=24% Similarity=0.289 Sum_probs=34.0
Q ss_pred CCCCcccEEECCCCcCCCCChhhhhcCCCCCEEEeeccccccc-CchhhcCCCCCCeEeCCCC
Q 002574 260 INFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGH-IPNEFANLKLLEVLDLSNN 321 (906)
Q Consensus 260 ~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~L~~n 321 (906)
.++|.|++|+++.|.+...+-..-....+|+.|-|.+..+.-. ....+..+|.++.|+++.|
T Consensus 94 e~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 94 EQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred hcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 3455555555555555433221113456788888777665422 2233456667777777766
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.17 E-value=2.2e-07 Score=90.61 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=18.6
Q ss_pred CCCCCCEEeCCCCCCCCCC---CChhhhcCCCCCeeeccC
Q 002574 127 HLKYLDTLDLSLNDFEGAE---IPEYFGQLKNLRYLNLSF 163 (906)
Q Consensus 127 ~l~~L~~L~Ls~n~~~~~~---lp~~l~~l~~L~~L~Ls~ 163 (906)
.+..++.+|||+|.|.... +...+.+-.+|+..+++.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 3455566666666655431 222344445556555554
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.08 E-value=1.3e-07 Score=104.18 Aligned_cols=58 Identities=38% Similarity=0.342 Sum_probs=26.5
Q ss_pred CceeeccCccccCCCCccCCCCCCCCEEeCcCccCCccc-ccchhccccCceeecCCCCcc
Q 002574 390 LQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTI-PESFGKLSELVDANLLQNSWE 449 (906)
Q Consensus 390 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~ 449 (906)
|+.|.+++|.++.. .++.++.+|+.||+++|-+.+.- -.-+..+..|+.|++.+|++-
T Consensus 234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 45555555544422 22445555555555555444311 112334445555555555543
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.07 E-value=3.9e-07 Score=79.68 Aligned_cols=56 Identities=30% Similarity=0.520 Sum_probs=27.8
Q ss_pred cEEEcCCCcccccCChhhhccCCCCEEeCcCCcccccccccccCCCCCCeEeCcCCcc
Q 002574 810 NSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNL 867 (906)
Q Consensus 810 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l 867 (906)
+.|+|++|.++ .+|+++..++.|+.|+++.|.+. ..|+.+..|.+|-+|+..+|.+
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence 44555555554 44555555555555555555554 2344444455555555444443
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.06 E-value=3.6e-07 Score=79.88 Aligned_cols=66 Identities=21% Similarity=0.248 Sum_probs=36.7
Q ss_pred cEEEcCCCcccccCChhhhccCCCCEEeCcCCcccccccccccCCCCCCeEeCcCCcccccCCCC-CCC
Q 002574 810 NSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSL-PNF 877 (906)
Q Consensus 810 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~ 877 (906)
+.|+++.|.+. ..|+.+..|.++-.||..+|.+. .||..+---+.....++.++++.+.-|.+ +.|
T Consensus 103 r~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa~ 169 (177)
T KOG4579|consen 103 RSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQAL 169 (177)
T ss_pred hhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccccc
Confidence 45666666665 44555666666666666666665 44443322223333445666777666655 444
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.04 E-value=2.3e-06 Score=83.67 Aligned_cols=93 Identities=20% Similarity=0.168 Sum_probs=43.0
Q ss_pred hcCCCCCcEEECCCccCCCCCcchH-HHhcCCCCCcEEEccCCcCCCCCC---------ccCcCCCCcccEEECCCCcCC
Q 002574 207 LSGLSSLKLLNLGFVKLDHVGADWL-QAVNMLPSLVELRLHYCQLQGIPL---------SLPFINFTSISVLDLSENSFN 276 (906)
Q Consensus 207 l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~---------~~~~~~l~~L~~L~Ls~n~~~ 276 (906)
+..+..++.+++++|.+..-...|+ ..+..-.+|+..+++.-....... ..++..|+.|+..+||.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 4446666666666666655433333 233444555555544432111100 012344555555555555555
Q ss_pred CCChhhh----hcCCCCCEEEeecccc
Q 002574 277 SAIPPWL----FSLTSLTKLYLRWNFF 299 (906)
Q Consensus 277 ~~~p~~l----~~l~~L~~L~L~~n~~ 299 (906)
...|+.+ +.-+.|++|.+++|.+
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCC
Confidence 4444332 2334555555555543
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=2.4e-06 Score=84.72 Aligned_cols=87 Identities=28% Similarity=0.259 Sum_probs=51.0
Q ss_pred CCCCCCEEeCCCCCCCCC-CCChhhhcCCCCCeeeccCCcCccCCCcCcCCCCCCcEEEccCCCCCCCcCCccccccchh
Q 002574 127 HLKYLDTLDLSLNDFEGA-EIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLN 205 (906)
Q Consensus 127 ~l~~L~~L~Ls~n~~~~~-~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~ 205 (906)
..++++.+||.+|.++.. .+-.-+.+|++|++|+|+.|.+...+-..-..+.+|++|-|.+..+...... +
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~--------s 140 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQST--------S 140 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhh--------h
Confidence 456777778877777654 1233445677778888877766533221113456777777776654332111 1
Q ss_pred hhcCCCCCcEEECCCc
Q 002574 206 WLSGLSSLKLLNLGFV 221 (906)
Q Consensus 206 ~l~~l~~L~~L~l~~n 221 (906)
.+..++.++.|.++.|
T Consensus 141 ~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDN 156 (418)
T ss_pred hhhcchhhhhhhhccc
Confidence 2556666666666666
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.85 E-value=7.6e-07 Score=92.44 Aligned_cols=283 Identities=18% Similarity=0.130 Sum_probs=139.6
Q ss_pred CCCEEeCCCCCCCCC-CCChhhhcCCCCCeeeccCCc-CccCCCcCc-CCCCCCcEEEccCCCCCCCcCCccccccchhh
Q 002574 130 YLDTLDLSLNDFEGA-EIPEYFGQLKNLRYLNLSFSS-FSGEIPPQL-GSLSSLQYLDLYADSFSSNSGSLALHAQNLNW 206 (906)
Q Consensus 130 ~L~~L~Ls~n~~~~~-~lp~~l~~l~~L~~L~Ls~n~-~~~~~p~~l-~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~ 206 (906)
.|+.|.+.++.-.+. .+-..-..++++++|++.+|. ++...-.++ ..+++|++|++..|.. +....++.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~--------iT~~~Lk~ 210 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSS--------ITDVSLKY 210 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccch--------hHHHHHHH
Confidence 455566665543322 122233455666666666653 222211222 3456666666654321 01111221
Q ss_pred -hcCCCCCcEEECCCcc-CCCCCcchHHHhcCCCCCcEEEccCCcCCCCCC-ccCcCCCCcccEEECCCCcCCCCCh--h
Q 002574 207 -LSGLSSLKLLNLGFVK-LDHVGADWLQAVNMLPSLVELRLHYCQLQGIPL-SLPFINFTSISVLDLSENSFNSAIP--P 281 (906)
Q Consensus 207 -l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~p--~ 281 (906)
-..+++|++++++|+. +++. .+-.....+..++.+.+.+|.-.+... ...-..+.-+..+++..|....... .
T Consensus 211 la~gC~kL~~lNlSwc~qi~~~--gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~ 288 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISGN--GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL 288 (483)
T ss_pred HHHhhhhHHHhhhccCchhhcC--cchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence 2356666666666663 2221 111223344555555555542221110 0001223334455544543211111 1
Q ss_pred hhhcCCCCCEEEeecccccccCc-hhh-cCCCCCCeEeCCCCCCCCCCcchhhh-cCCCCCEEEccCCcCCccccccccc
Q 002574 282 WLFSLTSLTKLYLRWNFFTGHIP-NEF-ANLKLLEVLDLSNNLDLGGQLPKLFG-ILRRLKSLDLSANNLNGEVHEFFDG 358 (906)
Q Consensus 282 ~l~~l~~L~~L~L~~n~~~~~~~-~~l-~~l~~L~~L~L~~n~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~ 358 (906)
.-..+..|++|+.+++...+..+ .++ .+..+|++|.++.|..++..-...++ +++.|+.+++..+..... ..+..
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d--~tL~s 366 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD--GTLAS 366 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh--hhHhh
Confidence 11235667777776665422211 122 35677777777777555544444443 466777777777654322 24555
Q ss_pred CCCCCCCccEEECcCCCCCCcc-----chhccCCCCCceeeccCccccC-CCCccCCCCCCCCEEeCcCccC
Q 002574 359 FSGRPNNLEYLDLSSNSLEGEL-----PKSLGNLKNLQYLRLSGNSFWG-SIPSSIGNLSSLRKLDLSYNGM 424 (906)
Q Consensus 359 l~~~~~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~~ 424 (906)
+....+.|+.+.+++|...... ...-..+..|+.+.++++.... ..-+.+..+++|+.+++-+++-
T Consensus 367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 5566667888888877543211 1112345678888888886542 2234466778888888877753
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.76 E-value=2.1e-06 Score=89.21 Aligned_cols=279 Identities=20% Similarity=0.124 Sum_probs=171.2
Q ss_pred CCCCeeeccCCcCccCC--CcCcCCCCCCcEEEccCCCCCCCcCCccccccchh-hhcCCCCCcEEECCCc-cCCCCCcc
Q 002574 154 KNLRYLNLSFSSFSGEI--PPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLN-WLSGLSSLKLLNLGFV-KLDHVGAD 229 (906)
Q Consensus 154 ~~L~~L~Ls~n~~~~~~--p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~ 229 (906)
..|+.|.+.++.-.+.- -....+++++++|.+.++.... ...+. .-..+++|+++++..+ .+++..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iT--------d~s~~sla~~C~~l~~l~L~~c~~iT~~~-- 207 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKIT--------DSSLLSLARYCRKLRHLNLHSCSSITDVS-- 207 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceecc--------HHHHHHHHHhcchhhhhhhcccchhHHHH--
Confidence 46888888888544322 2334678999999998876221 11111 2346899999999884 444432
Q ss_pred hHH-HhcCCCCCcEEEccCC-cCCCCCCccCcCCCCcccEEECCCCcCCCCChhhh----hcCCCCCEEEeecccccccC
Q 002574 230 WLQ-AVNMLPSLVELRLHYC-QLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWL----FSLTSLTKLYLRWNFFTGHI 303 (906)
Q Consensus 230 ~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l----~~l~~L~~L~L~~n~~~~~~ 303 (906)
+. ....+++|++|++++| ++++-.....+.++..++.+.+.+|.-.+ -..+ +.+..+.++++..+......
T Consensus 208 -Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 208 -LKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred -HHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccch
Confidence 22 3346899999999998 34443322335566777777777764221 1222 23455777776666432221
Q ss_pred c--hhhcCCCCCCeEeCCCCCCCCCCcchhh-hcCCCCCEEEccCCcC-CcccccccccCCCCCCCccEEECcCCCCCC-
Q 002574 304 P--NEFANLKLLEVLDLSNNLDLGGQLPKLF-GILRRLKSLDLSANNL-NGEVHEFFDGFSGRPNNLEYLDLSSNSLEG- 378 (906)
Q Consensus 304 ~--~~l~~l~~L~~L~L~~n~~~~~~~~~~l-~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~- 378 (906)
. ..=..+..||+|+.+++..++...-..+ .++.+|+.|.++.++- +.. .|..+....+.|+.+++..+....
T Consensus 285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~---~ft~l~rn~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 285 DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR---GFTMLGRNCPHLERLDLEECGLITD 361 (483)
T ss_pred HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh---hhhhhhcCChhhhhhcccccceehh
Confidence 1 1114578899999999866555444444 4678899999988863 322 222333445589999998886532
Q ss_pred -ccchhccCCCCCceeeccCccccCCC-----CccCCCCCCCCEEeCcCccCCc-ccccchhccccCceeecCCCCc
Q 002574 379 -ELPKSLGNLKNLQYLRLSGNSFWGSI-----PSSIGNLSSLRKLDLSYNGMNG-TIPESFGKLSELVDANLLQNSW 448 (906)
Q Consensus 379 -~~p~~l~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l 448 (906)
.+...-.+++.|+.+.+++|...... ...-..+..|+.+.+++++... ..-+.+..++.|+.+++.+++-
T Consensus 362 ~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 362 GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 12222346788999999988643221 1222456678888888886542 3445566777888877777653
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.75 E-value=1.5e-05 Score=93.14 Aligned_cols=107 Identities=25% Similarity=0.319 Sum_probs=67.7
Q ss_pred CCCcEEECCCccCCCCCcchHHHhcC-CCCCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCCChhhhhcCCCC
Q 002574 211 SSLKLLNLGFVKLDHVGADWLQAVNM-LPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSLTSL 289 (906)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L 289 (906)
.+|++|++++.. ....+|+..++. +|.|+.|.+.+-.+..........++++|..||+|+..++.. .+++++++|
T Consensus 122 ~nL~~LdI~G~~--~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSE--LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccc--hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence 455666665532 224566666654 678888887776654433223356777888888888777644 567778888
Q ss_pred CEEEeecccccc-cCchhhcCCCCCCeEeCCCC
Q 002574 290 TKLYLRWNFFTG-HIPNEFANLKLLEVLDLSNN 321 (906)
Q Consensus 290 ~~L~L~~n~~~~-~~~~~l~~l~~L~~L~L~~n 321 (906)
+.|.+.+-.+.. ..-..+.++++|++||+|..
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 888777666543 22234566777777777765
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=5.8e-05 Score=81.00 Aligned_cols=162 Identities=17% Similarity=0.236 Sum_probs=86.9
Q ss_pred cCCCCccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCCEEEccCCcCcccccHHHHhcCCCCc
Q 002574 652 YHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFF 731 (906)
Q Consensus 652 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~ 731 (906)
..+..++.|++++|.++. +|. + ..+|+.|.+++|.-...+|+.+ .++|+.|++++|.....+| .+|+
T Consensus 49 ~~~~~l~~L~Is~c~L~s-LP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~sLe 115 (426)
T PRK15386 49 EEARASGRLYIKDCDIES-LPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------ESVR 115 (426)
T ss_pred HHhcCCCEEEeCCCCCcc-cCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------cccc
Confidence 345777788888887663 341 1 2357778887765444566544 2467777777773222343 3455
Q ss_pred EEEccCCccc--cccCccccCCCCCCEEeCCCCcCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcc
Q 002574 732 MLRLRSNLLS--GDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADV 809 (906)
Q Consensus 732 ~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 809 (906)
.|+++++... +.+|. +|+.|.+.+++.. .+..+. ...+++|
T Consensus 116 ~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~--~~~~lp-----------------------------~~LPsSL 158 (426)
T PRK15386 116 SLEIKGSATDSIKNVPN------GLTSLSINSYNPE--NQARID-----------------------------NLISPSL 158 (426)
T ss_pred eEEeCCCCCcccccCcc------hHhheeccccccc--cccccc-----------------------------cccCCcc
Confidence 5666554432 12222 3445554332210 000000 0123567
Q ss_pred cEEEcCCCcccccCChhhhccCCCCEEeCcCCcc------cccccccccCCCCCCeEeCcCCcc
Q 002574 810 NSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQL------SGAIPQSLSSLASLSKLNLSFNNL 867 (906)
Q Consensus 810 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l------~~~ip~~l~~l~~L~~L~ls~N~l 867 (906)
+.|++++|... ..|+.+. .+|+.|+++.|.. ...+|+.+ .+....++.++.+.+
T Consensus 159 k~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f 218 (426)
T PRK15386 159 KTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVF 218 (426)
T ss_pred cEEEecCCCcc-cCccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCHHHh
Confidence 89999998876 4455444 5889999988732 22456555 444444444444444
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.73 E-value=2.8e-05 Score=55.31 Aligned_cols=37 Identities=43% Similarity=0.703 Sum_probs=24.2
Q ss_pred cccEEEcCCCcccccCChhhhccCCCCEEeCcCCcccc
Q 002574 808 DVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSG 845 (906)
Q Consensus 808 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 845 (906)
+|+.|++++|+++ .+|..++++++|+.|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 4567777777777 455567777777777777777763
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.62 E-value=4.6e-05 Score=54.18 Aligned_cols=37 Identities=43% Similarity=0.634 Sum_probs=32.2
Q ss_pred CCCCEEeCcCCcccccccccccCCCCCCeEeCcCCccc
Q 002574 831 SALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLA 868 (906)
Q Consensus 831 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 868 (906)
++|++|++++|+++ .+|..+.+|+.|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 57999999999999 56777999999999999999997
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.58 E-value=0.0002 Score=76.92 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=7.8
Q ss_pred CCCCEEeCCCCcCC
Q 002574 752 QNLHIIDLSHNNFS 765 (906)
Q Consensus 752 ~~L~~L~Ls~N~l~ 765 (906)
++|++|++++|...
T Consensus 156 sSLk~L~Is~c~~i 169 (426)
T PRK15386 156 PSLKTLSLTGCSNI 169 (426)
T ss_pred CcccEEEecCCCcc
Confidence 35666666655543
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.54 E-value=3.1e-05 Score=90.51 Aligned_cols=150 Identities=26% Similarity=0.276 Sum_probs=93.8
Q ss_pred CCCCeEeCCCCCCCCCCcchhhh-cCCCCCEEEccCCcCCcccccccccCCCCCCCccEEECcCCCCCCccchhccCCCC
Q 002574 311 KLLEVLDLSNNLDLGGQLPKLFG-ILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKN 389 (906)
Q Consensus 311 ~~L~~L~L~~n~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~ 389 (906)
.+|++|++++...+...-|..++ .+|.|+.|.+.+-.+... .|..+...+|+|..||+++.+++.. ..++++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~---dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND---DFSQLCASFPNLRSLDISGTNISNL--SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch---hHHHHhhccCccceeecCCCCccCc--HHHhcccc
Confidence 56788888877554444444443 478888888887665432 2445555666888888888888743 67788888
Q ss_pred CceeeccCccccC-CCCccCCCCCCCCEEeCcCccCCccc--c----cchhccccCceeecCCCCccCCCChHHhhcccc
Q 002574 390 LQYLRLSGNSFWG-SIPSSIGNLSSLRKLDLSYNGMNGTI--P----ESFGKLSELVDANLLQNSWEGILQESQFMNLKR 462 (906)
Q Consensus 390 L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~~~~~~--~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 462 (906)
|+.|.+.+=.+.. ..-..+.++++|+.||+|........ . +.-..+|+|+.||.+++.+...+-+.....-++
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN 276 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence 8888887766653 11234667888888888877554221 1 122346777777777666655443333333334
Q ss_pred ccE
Q 002574 463 LES 465 (906)
Q Consensus 463 L~~ 465 (906)
|+.
T Consensus 277 L~~ 279 (699)
T KOG3665|consen 277 LQQ 279 (699)
T ss_pred Hhh
Confidence 433
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.28 E-value=0.00036 Score=65.98 Aligned_cols=83 Identities=20% Similarity=0.227 Sum_probs=42.9
Q ss_pred CCceeeccCccccCCCCccCCCCCCCCEEeCcCccCCcccccchhccccCceeecCCCCccCCCChHHhhccccccEeec
Q 002574 389 NLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRL 468 (906)
Q Consensus 389 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 468 (906)
....+||++|.+... ..|..++.|.+|.+.+|+|+...|.--.-++.|..|.+.+|++........+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 344455555554321 224455555555555555554444433344555555555555554444445566666666666
Q ss_pred CCCCC
Q 002574 469 TTEPT 473 (906)
Q Consensus 469 ~~n~~ 473 (906)
-+|+.
T Consensus 121 l~Npv 125 (233)
T KOG1644|consen 121 LGNPV 125 (233)
T ss_pred cCCch
Confidence 66643
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.25 E-value=0.00028 Score=69.74 Aligned_cols=122 Identities=22% Similarity=0.189 Sum_probs=78.6
Q ss_pred ccccccccCCCCCCEEeCCCCCCCCCCCChhhhcCCCCCeeeccCC--cCccCCCcCcCCCCCCcEEEccCCCCCCCcCC
Q 002574 119 GKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFS--SFSGEIPPQLGSLSSLQYLDLYADSFSSNSGS 196 (906)
Q Consensus 119 ~~l~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n--~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~ 196 (906)
|.+..-...+..|+.|++.+..++.. ..+-.|++|++|.++.| .+++.++.-...+++|++|++++|++..+
T Consensus 33 g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l--- 106 (260)
T KOG2739|consen 33 GKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL--- 106 (260)
T ss_pred CCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc---
Confidence 44544455566677777777766643 23446889999999999 66667776667779999999998887653
Q ss_pred ccccccchhhhcCCCCCcEEECCCccCCCCCcchHHHhcCCCCCcEEEccCCcCC
Q 002574 197 LALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQ 251 (906)
Q Consensus 197 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 251 (906)
..+.-+..+.+|..|++..|..+.....--..+.-+++|++|+-....-.
T Consensus 107 -----stl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 107 -----STLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred -----cccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence 22333666777777777777666643332334444566666655444333
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.11 E-value=0.00047 Score=65.23 Aligned_cols=84 Identities=24% Similarity=0.225 Sum_probs=49.3
Q ss_pred CCCEEeCCCCCCCCCCCChhhhcCCCCCeeeccCCcCccCCCcCcCCCCCCcEEEccCCCCCCCcCCccccccchhhhcC
Q 002574 130 YLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSG 209 (906)
Q Consensus 130 ~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~l~~ 209 (906)
....+||+.|.+... ..|..+++|..|.+++|.|+..-|.--.-+++|++|.+.+|.+.... ++..+..
T Consensus 43 ~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~--------dl~pLa~ 111 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELG--------DLDPLAS 111 (233)
T ss_pred ccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhh--------hcchhcc
Confidence 455677777777532 34667777788888888777544443334566777777777665432 2222444
Q ss_pred CCCCcEEECCCccCC
Q 002574 210 LSSLKLLNLGFVKLD 224 (906)
Q Consensus 210 l~~L~~L~l~~n~l~ 224 (906)
+++|++|.+-+|.++
T Consensus 112 ~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPVE 126 (233)
T ss_pred CCccceeeecCCchh
Confidence 445555554444443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.92 E-value=0.0021 Score=58.86 Aligned_cols=105 Identities=22% Similarity=0.293 Sum_probs=35.8
Q ss_pred CCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCCCCCEEECcCCccccccccccccCCCCC
Q 002574 627 VCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLT 706 (906)
Q Consensus 627 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 706 (906)
|.++++|+.+.+.. .+...-..+|.+++.|+.+.+.++ +.......|.++++++.+.+.+ .+.......|..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 34444444444442 233233334444444444444442 3333333444444455555543 22222233344455555
Q ss_pred EEEccCCcCcccccHHHHhcCCCCcEEEccC
Q 002574 707 SIDLGGNQLSGSLPLWISENLSSFFMLRLRS 737 (906)
Q Consensus 707 ~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~ 737 (906)
.+++..+ +. .++...+.+. .++.+.+.+
T Consensus 85 ~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 85 NIDIPSN-IT-EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEEETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred ccccCcc-cc-EEchhhhcCC-CceEEEECC
Confidence 5555433 22 3333333333 445554443
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.90 E-value=0.002 Score=59.04 Aligned_cols=108 Identities=17% Similarity=0.206 Sum_probs=47.9
Q ss_pred chhhcccccceeeccccccccccCCCCCCCCCCCcEEEccCCcCcccCCCCccCCCCccEEeCCCCcccccCCcCCCCCC
Q 002574 600 ENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLR 679 (906)
Q Consensus 600 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 679 (906)
+..+....+++.+.+.. .+..+....|.++++|+.+.+.++ +...-..+|.++++++.+.+.+ .+.......|..++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 33444455566665553 344444555666666666666554 4434445556665666666654 33333344566666
Q ss_pred CCCEEECcCCccccccccccccCCCCCEEEccC
Q 002574 680 SLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGG 712 (906)
Q Consensus 680 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 712 (906)
+|+.+++..+ +.......|.++ +|+.+.+..
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 6666666544 333334445555 666666554
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.45 E-value=0.0017 Score=64.38 Aligned_cols=83 Identities=20% Similarity=0.144 Sum_probs=38.3
Q ss_pred CCCCccEEeCCCC--cccccCCcCCCCCCCCCEEECcCCccccc-cccccccCCCCCEEEccCCcCcccc--cHHHHhcC
Q 002574 653 HSQMFWGIDISNN--SLTGSIPSSFGSLRSLSVLLLSNNNLSGG-IPCSLQNCTGLTSIDLGGNQLSGSL--PLWISENL 727 (906)
Q Consensus 653 ~~~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~--p~~~~~~l 727 (906)
.+++|++|.++.| ++.+.++.....+++|++|++++|++.-. .-..+..+.+|..|++.+|..+..- -..++.-+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 3444444555555 33333333333445555555555555410 0011344455666666666555311 11233346
Q ss_pred CCCcEEEc
Q 002574 728 SSFFMLRL 735 (906)
Q Consensus 728 ~~L~~L~L 735 (906)
++|++|+-
T Consensus 143 ~~L~~LD~ 150 (260)
T KOG2739|consen 143 PSLKYLDG 150 (260)
T ss_pred hhhccccc
Confidence 66666653
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.00031 Score=69.41 Aligned_cols=105 Identities=22% Similarity=0.228 Sum_probs=74.5
Q ss_pred CCCCCCEEeCCCCCCCCCCCChhhhcCCCCCeeeccCCcCccCCCcCcCCCCCCcEEEccCCCCCCCcCCccccccchhh
Q 002574 127 HLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNW 206 (906)
Q Consensus 127 ~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~ 206 (906)
.+.+.+.|+.-+|.+.+. ....+++.|++|.||-|+|+..- .+..|++|+.|+|..|.|..+ ..+.+
T Consensus 17 dl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sl--------dEL~Y 83 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESL--------DELEY 83 (388)
T ss_pred HHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccH--------HHHHH
Confidence 466778889999998865 34568899999999999987433 377888999999988887664 34566
Q ss_pred hcCCCCCcEEECCCccCCCCCcchH--HHhcCCCCCcEEE
Q 002574 207 LSGLSSLKLLNLGFVKLDHVGADWL--QAVNMLPSLVELR 244 (906)
Q Consensus 207 l~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~l~~L~~L~ 244 (906)
+.++++|+.|.|..|.-.+..+.-. ..+..+|+|++||
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888888888888876655432211 2334455555554
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.00032 Score=69.39 Aligned_cols=79 Identities=27% Similarity=0.272 Sum_probs=32.8
Q ss_pred CCCCCcEEEccCCcCCCCCCccCcCCCCcccEEECCCCcCCCCC-hhhhhcCCCCCEEEeecccccccCch-----hhcC
Q 002574 236 MLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAI-PPWLFSLTSLTKLYLRWNFFTGHIPN-----EFAN 309 (906)
Q Consensus 236 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~L~~n~~~~~~~~-----~l~~ 309 (906)
+++.|++|.|+-|.|+.+.+ +..|++|++|+|..|.|...- -.-+.++++|+.|.|..|.-.+.-+. .+.-
T Consensus 39 kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred hcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 34444444444444444333 444444444444444443210 01233444555555544443333221 2334
Q ss_pred CCCCCeEe
Q 002574 310 LKLLEVLD 317 (906)
Q Consensus 310 l~~L~~L~ 317 (906)
+++|+.||
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 55555554
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.11 E-value=0.00065 Score=78.45 Aligned_cols=10 Identities=50% Similarity=0.461 Sum_probs=5.7
Q ss_pred CCEEeCcCcc
Q 002574 414 LRKLDLSYNG 423 (906)
Q Consensus 414 L~~L~L~~n~ 423 (906)
++.|+++.+.
T Consensus 403 l~~L~l~~~~ 412 (482)
T KOG1947|consen 403 LRVLNLSDCR 412 (482)
T ss_pred cceEecccCc
Confidence 5556665554
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.76 E-value=0.0027 Score=73.28 Aligned_cols=36 Identities=28% Similarity=0.376 Sum_probs=15.6
Q ss_pred CCCCcEEEccCC-cCCCCCCccCcCCCCcccEEECCC
Q 002574 237 LPSLVELRLHYC-QLQGIPLSLPFINFTSISVLDLSE 272 (906)
Q Consensus 237 l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~Ls~ 272 (906)
++.|+.+.+..+ .+...........++.|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 455555555555 222211111233445555555554
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.16 E-value=0.0085 Score=35.30 Aligned_cols=18 Identities=50% Similarity=0.774 Sum_probs=7.9
Q ss_pred CCEEeCcCCcccccccccc
Q 002574 833 LHILNLSHNQLSGAIPQSL 851 (906)
Q Consensus 833 L~~L~Ls~N~l~~~ip~~l 851 (906)
|++|||++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 344444444444 344433
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.88 E-value=0.011 Score=34.78 Aligned_cols=22 Identities=50% Similarity=0.735 Sum_probs=17.8
Q ss_pred cccEEEcCCCcccccCChhhhcc
Q 002574 808 DVNSIDLSWNNLTGQIPDEIGNL 830 (906)
Q Consensus 808 ~L~~LdLs~N~l~~~ip~~l~~l 830 (906)
+|+.|||++|+++ .+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 3689999999999 788877654
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.28 E-value=0.00078 Score=75.55 Aligned_cols=39 Identities=28% Similarity=0.277 Sum_probs=21.8
Q ss_pred CCCceeeccCccccCCC----CccCCCCCCCCEEeCcCccCCc
Q 002574 388 KNLQYLRLSGNSFWGSI----PSSIGNLSSLRKLDLSYNGMNG 426 (906)
Q Consensus 388 ~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~L~~n~~~~ 426 (906)
..+++++++.|.++... ...+..+++++++.++.|.+..
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 44555555555555332 2334455667777777776653
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.91 E-value=0.0011 Score=74.40 Aligned_cols=238 Identities=23% Similarity=0.244 Sum_probs=116.7
Q ss_pred CCCcEEEccCCcCccc----CCCCccCCCCccEEeCCCCcccc----cCCcCC----CCCCCCCEEECcCCcccccc---
Q 002574 631 EDLQILSIRSNKLSGE----FPNCWYHSQMFWGIDISNNSLTG----SIPSSF----GSLRSLSVLLLSNNNLSGGI--- 695 (906)
Q Consensus 631 ~~L~~L~Ls~n~l~~~----~p~~l~~~~~L~~L~Ls~n~l~~----~~~~~~----~~l~~L~~L~Ls~n~l~~~~--- 695 (906)
..+++|++..|.+++. +...+.....++.++++.|.+.. .++..+ ....++++|.+.+|.++...
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~ 223 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL 223 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH
Confidence 3445555555555432 23344445666666666665521 112222 23566777777777765211
Q ss_pred -ccccccCCC-CCEEEccCCcCcccccHHHHhc---C-CCCcEEEccCCccccc----cCccccCCCCCCEEeCCCCcCC
Q 002574 696 -PCSLQNCTG-LTSIDLGGNQLSGSLPLWISEN---L-SSFFMLRLRSNLLSGD----IPQRLCNLQNLHIIDLSHNNFS 765 (906)
Q Consensus 696 -p~~l~~l~~-L~~L~L~~N~l~~~~p~~~~~~---l-~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 765 (906)
...+...+. +..+++.+|.+-+..-..+... + ..+++++++.|.++.. +...+..+++++++.+++|.+.
T Consensus 224 l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 224 LDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 122344444 6667777777653322222111 2 3557778888877654 2345566778888888888775
Q ss_pred CCCCcc----c---ccccccccC-CC--cc----c---------hh--eeeeee--ecCC----CcccccccCcccEEEc
Q 002574 766 GAIPRC----I---GNLSALVYG-NN--SE----V---------FQ--QLIWRV--VKGR----NPEYSNIIADVNSIDL 814 (906)
Q Consensus 766 ~~ip~~----~---~~l~~L~~~-~~--~~----~---------~~--~~~~~~--~~~~----~~~~~~~~~~L~~LdL 814 (906)
..--.. . ..+..+... +. .. . .. ...+.. .+.. ..........+..+++
T Consensus 304 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 383 (478)
T KOG4308|consen 304 DYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSL 383 (478)
T ss_pred cHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhh
Confidence 321100 0 000111000 00 00 0 00 000000 0000 0000111223455666
Q ss_pred CCCcccc----cCChhhhccCCCCEEeCcCCccccccccccc----CCCCCCeEeCcCCccc
Q 002574 815 SWNNLTG----QIPDEIGNLSALHILNLSHNQLSGAIPQSLS----SLASLSKLNLSFNNLA 868 (906)
Q Consensus 815 s~N~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~----~l~~L~~L~ls~N~l~ 868 (906)
..+.+.+ .++..+.....++.+++++|.....-+..+. ....+..+.++.|+++
T Consensus 384 ~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 445 (478)
T KOG4308|consen 384 NSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNGSLKALRLSRNPIT 445 (478)
T ss_pred hccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcccchhhhhccChhh
Confidence 6665554 3444567778888999999877654433322 2227888888888876
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.22 E-value=0.015 Score=56.31 Aligned_cols=89 Identities=18% Similarity=0.232 Sum_probs=71.9
Q ss_pred ccccCCCCCCEEeCCCCcCCCCCCcccccccccccCCCccchheeeeeeecCCCcccccccCcccEEEcCCCcccccCCh
Q 002574 746 QRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPD 825 (906)
Q Consensus 746 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~ 825 (906)
.++......+.||++.|++. ..-..|+.++.+ ..||++.|++. ..|+
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~-------------------------------~rl~~sknq~~-~~~~ 82 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRL-------------------------------VRLDLSKNQIK-FLPK 82 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHH-------------------------------HHHhccHhhHh-hChh
Confidence 35667778888999988875 333344444444 67999999998 7899
Q ss_pred hhhccCCCCEEeCcCCcccccccccccCCCCCCeEeCcCCccc
Q 002574 826 EIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLA 868 (906)
Q Consensus 826 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 868 (906)
.++++..+..+++.+|..+ ..|.+++..+.++++++.+|++.
T Consensus 83 d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 83 DAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 9999999999999999888 67899999999999999999875
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.79 E-value=0.017 Score=56.04 Aligned_cols=82 Identities=21% Similarity=0.155 Sum_probs=65.1
Q ss_pred CcEEEEecCCcccccCCCcCCCcCCCCccccccccccccCCCCCCEEeCCCCCCCCCCCChhhhcCCCCCeeeccCCcCc
Q 002574 88 GHVTQLNLRNPYQLINGGVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFS 167 (906)
Q Consensus 88 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~ 167 (906)
.||+.||++.+. + -.+-..+..++.|..||++.|.+. -+|..++.+..++++++..|+.+
T Consensus 42 kr~tvld~~s~r-----------------~-vn~~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~ 101 (326)
T KOG0473|consen 42 KRVTVLDLSSNR-----------------L-VNLGKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS 101 (326)
T ss_pred ceeeeehhhhhH-----------------H-HhhccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh
Confidence 578899988751 1 123345677888889999988887 47888999999999999888887
Q ss_pred cCCCcCcCCCCCCcEEEccCCCC
Q 002574 168 GEIPPQLGSLSSLQYLDLYADSF 190 (906)
Q Consensus 168 ~~~p~~l~~l~~L~~L~ls~n~~ 190 (906)
..|.+++.+++++++++-++.+
T Consensus 102 -~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 102 -QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred -hCCccccccCCcchhhhccCcc
Confidence 7888999999999988887764
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.96 E-value=0.27 Score=26.76 Aligned_cols=11 Identities=45% Similarity=0.815 Sum_probs=3.5
Q ss_pred CCEEEccCCcC
Q 002574 705 LTSIDLGGNQL 715 (906)
Q Consensus 705 L~~L~L~~N~l 715 (906)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.65 E-value=0.14 Score=49.11 Aligned_cols=83 Identities=22% Similarity=0.114 Sum_probs=57.4
Q ss_pred cccEEECCCCcCCCCChhhhhcCCCCCEEEeecccccccC-chhhc-CCCCCCeEeCCCCCCCCCCcchhhhcCCCCCEE
Q 002574 264 SISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHI-PNEFA-NLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSL 341 (906)
Q Consensus 264 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~-~~~l~-~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L 341 (906)
.++.+|-++..+..+--..+..++.++.|.+.+|.-.+.- -+-++ -.++|+.|++++|+.++......+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4677777777776655566677777888887777533211 01111 357889999999988888777788888888888
Q ss_pred EccCC
Q 002574 342 DLSAN 346 (906)
Q Consensus 342 ~Ls~n 346 (906)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 77653
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.42 E-value=0.79 Score=28.10 Aligned_cols=21 Identities=48% Similarity=0.531 Sum_probs=11.6
Q ss_pred CCCCEEEccCCcCcccccHHHH
Q 002574 703 TGLTSIDLGGNQLSGSLPLWIS 724 (906)
Q Consensus 703 ~~L~~L~L~~N~l~~~~p~~~~ 724 (906)
++|+.|++++|++. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45566666666655 5555443
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.42 E-value=0.79 Score=28.10 Aligned_cols=21 Identities=48% Similarity=0.531 Sum_probs=11.6
Q ss_pred CCCCEEEccCCcCcccccHHHH
Q 002574 703 TGLTSIDLGGNQLSGSLPLWIS 724 (906)
Q Consensus 703 ~~L~~L~L~~N~l~~~~p~~~~ 724 (906)
++|+.|++++|++. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45566666666655 5555443
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.52 E-value=0.21 Score=47.95 Aligned_cols=34 Identities=35% Similarity=0.326 Sum_probs=20.3
Q ss_pred CCccEEECcCC-CCCCccchhccCCCCCceeeccC
Q 002574 364 NNLEYLDLSSN-SLEGELPKSLGNLKNLQYLRLSG 397 (906)
Q Consensus 364 ~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~ 397 (906)
++|+.|++++| +|+..--..+..+++|+.|.+.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 47777777766 35544444555666666666553
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.31 E-value=0.89 Score=27.87 Aligned_cols=14 Identities=57% Similarity=0.674 Sum_probs=7.7
Q ss_pred CCCCEEeCcCCccc
Q 002574 831 SALHILNLSHNQLS 844 (906)
Q Consensus 831 ~~L~~L~Ls~N~l~ 844 (906)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.31 E-value=0.89 Score=27.87 Aligned_cols=14 Identities=57% Similarity=0.674 Sum_probs=7.7
Q ss_pred CCCCEEeCcCCccc
Q 002574 831 SALHILNLSHNQLS 844 (906)
Q Consensus 831 ~~L~~L~Ls~N~l~ 844 (906)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=78.99 E-value=0.71 Score=27.70 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=5.4
Q ss_pred ccEEEcCCCcccc
Q 002574 809 VNSIDLSWNNLTG 821 (906)
Q Consensus 809 L~~LdLs~N~l~~ 821 (906)
|+.|||++|++++
T Consensus 4 L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 4 LETLDLSNNQITD 16 (24)
T ss_dssp -SEEE-TSSBEHH
T ss_pred CCEEEccCCcCCH
Confidence 3445555555443
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=69.23 E-value=27 Score=38.44 Aligned_cols=258 Identities=19% Similarity=0.075 Sum_probs=117.1
Q ss_pred CCCCeeeccCCcCccCCCcCcCCCCCCcEEEccCCCCCCCcCCccccccchhhh---cCCCCCcEEECCCccCCCCCcch
Q 002574 154 KNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWL---SGLSSLKLLNLGFVKLDHVGADW 230 (906)
Q Consensus 154 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~l---~~l~~L~~L~l~~n~l~~~~~~~ 230 (906)
+.+++++++.|.+....|..|..=..= +.++.|..+.- .++.+ +.-..+.+++++.|...+-.+..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~p--l~lr~c~lssk---------fis~l~~qsg~~~lteldls~n~~Kddip~~ 233 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNP--LSLRVCELSSK---------FISKLLIQSGRLWLTELDLSTNGGKDDIPRT 233 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCc--cchhhhhhhhh---------HHHHhhhhhccccccccccccCCCCccchhH
Confidence 346777888877776666544321100 33333332221 00001 12234677788877766655444
Q ss_pred HHHhcCCCCCcEEEccCCcCCC--CCCccCcCCCCcccEEECCCCcCCC----CCh----hhhhcCCCCCEEEeeccccc
Q 002574 231 LQAVNMLPSLVELRLHYCQLQG--IPLSLPFINFTSISVLDLSENSFNS----AIP----PWLFSLTSLTKLYLRWNFFT 300 (906)
Q Consensus 231 ~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~Ls~n~~~~----~~p----~~l~~l~~L~~L~L~~n~~~ 300 (906)
......-.-+++++.+...+.- .......+.-+.++..+++.|.... +.+ ..++.-+++ +|++..+...
T Consensus 234 ~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~p 312 (553)
T KOG4242|consen 234 LNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTP 312 (553)
T ss_pred HHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCc
Confidence 4444444556666666654322 2222334455677777777765431 111 223333455 6666655543
Q ss_pred ccCchhh-c-----CCCCCCeEeCCCCCCCCCCcchhhhcCCCCCEEEccCCcCCcccccccccCCCCCCCccEEECcCC
Q 002574 301 GHIPNEF-A-----NLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSN 374 (906)
Q Consensus 301 ~~~~~~l-~-----~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~~~~L~~L~L~~n 374 (906)
..-+..+ - .-+.=-.+++..|..-.+.....-..=..+++|+...|.+.+........ ...++.+.+++.+-
T Consensus 313 sE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~--~~s~s~r~l~agrs 390 (553)
T KOG4242|consen 313 SEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKR--KQSKSGRILKAGRS 390 (553)
T ss_pred hhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccce--eecccccccccccc
Confidence 3222211 0 00111233444442222222222222234777777777776654443311 11225666665543
Q ss_pred CCCC-ccchhc--------cCCCCCceeeccCccccCCCC---ccCCCCCCCCEEeCcCccCC
Q 002574 375 SLEG-ELPKSL--------GNLKNLQYLRLSGNSFWGSIP---SSIGNLSSLRKLDLSYNGMN 425 (906)
Q Consensus 375 ~l~~-~~p~~l--------~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n~~~ 425 (906)
.-.- ..+... ....-+..+.++.|......- ..+..-+.+..|++++|...
T Consensus 391 ~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 391 GDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred CCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 2210 001111 011235566666666543221 22334456777777777654
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=68.09 E-value=4.2 Score=25.04 Aligned_cols=15 Identities=40% Similarity=0.638 Sum_probs=9.9
Q ss_pred cCCCCEEeCcCCccc
Q 002574 830 LSALHILNLSHNQLS 844 (906)
Q Consensus 830 l~~L~~L~Ls~N~l~ 844 (906)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356677777777765
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=56.23 E-value=8.2 Score=23.74 Aligned_cols=17 Identities=41% Similarity=0.694 Sum_probs=10.6
Q ss_pred CccEEECcCCCCCCccch
Q 002574 365 NLEYLDLSSNSLEGELPK 382 (906)
Q Consensus 365 ~L~~L~L~~n~l~~~~p~ 382 (906)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 5666777777666 4443
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=53.56 E-value=9.9 Score=23.80 Aligned_cols=14 Identities=43% Similarity=0.636 Sum_probs=8.9
Q ss_pred CCCCEEeCcCCccc
Q 002574 831 SALHILNLSHNQLS 844 (906)
Q Consensus 831 ~~L~~L~Ls~N~l~ 844 (906)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=52.70 E-value=69 Score=35.48 Aligned_cols=59 Identities=22% Similarity=0.283 Sum_probs=35.0
Q ss_pred ccEEEcCCCcccccCCh---hhhccCCCCEEeCcCCcccc----cccccccCCCCCCeEeCcCCcc
Q 002574 809 VNSIDLSWNNLTGQIPD---EIGNLSALHILNLSHNQLSG----AIPQSLSSLASLSKLNLSFNNL 867 (906)
Q Consensus 809 L~~LdLs~N~l~~~ip~---~l~~l~~L~~L~Ls~N~l~~----~ip~~l~~l~~L~~L~ls~N~l 867 (906)
+..+.++.|.+...... .+..-+.+..||++.|.... .+|..+..-..+.....+.|..
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 45677777777633222 23445677888888886543 2455555555666666665543
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=43.04 E-value=14 Score=22.52 Aligned_cols=15 Identities=33% Similarity=0.335 Sum_probs=7.7
Q ss_pred CCCCeEeCCCCCCCC
Q 002574 311 KLLEVLDLSNNLDLG 325 (906)
Q Consensus 311 ~~L~~L~L~~n~~~~ 325 (906)
++|++|++++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 455555555554343
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.53 E-value=30 Score=38.98 Aligned_cols=65 Identities=29% Similarity=0.281 Sum_probs=42.4
Q ss_pred ccCcccEEEcCCCcccccC--ChhhhccCCCCEEeCcCC--cccccccccccCC--CCCCeEeCcCCcccccC
Q 002574 805 IIADVNSIDLSWNNLTGQI--PDEIGNLSALHILNLSHN--QLSGAIPQSLSSL--ASLSKLNLSFNNLAGKI 871 (906)
Q Consensus 805 ~~~~L~~LdLs~N~l~~~i--p~~l~~l~~L~~L~Ls~N--~l~~~ip~~l~~l--~~L~~L~ls~N~l~g~i 871 (906)
..+.+..+.|++|++.... ..--...++|+.|+||+| .+.. -..+.++ .-|+.|-+.+|+++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccch
Confidence 3455678899999987321 112245688999999999 4432 2233332 36888999999997544
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=28.54 E-value=28 Score=39.15 Aligned_cols=12 Identities=33% Similarity=0.282 Sum_probs=5.7
Q ss_pred CCEEeCcCccCC
Q 002574 414 LRKLDLSYNGMN 425 (906)
Q Consensus 414 L~~L~L~~n~~~ 425 (906)
|++|-+.+|++.
T Consensus 272 Leel~l~GNPlc 283 (585)
T KOG3763|consen 272 LEELVLEGNPLC 283 (585)
T ss_pred HHHeeecCCccc
Confidence 444444555443
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.49 E-value=45 Score=45.37 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=26.3
Q ss_pred EcCCCcccccCChhhhccCCCCEEeCcCCccc
Q 002574 813 DLSWNNLTGQIPDEIGNLSALHILNLSHNQLS 844 (906)
Q Consensus 813 dLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 844 (906)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68889998666678888889999999988765
Done!