Query 002574
Match_columns 906
No_of_seqs 487 out of 4974
Neff 9.9
Searched_HMMs 29240
Date Tue Mar 26 16:50:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002574.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1290-1294//hhsearch_pdb/002574hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 720.5 47.4 712 44-902 8-752 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 554.3 38.9 642 121-870 92-743 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 461.2 48.7 591 120-873 18-627 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 446.5 51.0 579 88-848 25-626 (680)
5 4eco_A Uncharacterized protein 1.0 1 1 423.3 25.5 110 45-175 27-159 (636)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 414.9 42.4 526 120-872 26-564 (606)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 414.1 43.2 300 539-894 255-565 (606)
8 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 413.7 37.8 233 606-874 327-564 (606)
9 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 406.2 35.6 208 606-847 349-561 (606)
10 3j0a_A TOLL-like receptor 5; m 1.0 1 1 401.8 39.7 331 128-473 23-374 (844)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=720.54 Aligned_cols=712 Identities=31% Similarity=0.480 Sum_probs=507.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf 793898999999886088999997899-98999773324833999958997217952224798678867777655620--
Q 002574 44 LCLDAEREGLLAFKESLTDPSGRLSSW-VGQDCCKWNGVYCNNQSGHVTQLNLRNPYQLINGGVGDSTAYKGSCLGGK-- 120 (906)
Q Consensus 44 ~~~~~~~~~l~~~~~~~~~~~~~~~~W-~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~-- 120 (906)
.+.++|++||++||+++.||. ++++| .+.+||.|.||+|+ .|||+.|+|++. .+.|.
T Consensus 8 ~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~-----------------~l~g~~~ 67 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSK-----------------PLNVGFS 67 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTS-----------------CCCEEHH
T ss_pred CCCHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCEEEC--CCCEEEEECCCC-----------------CCCCCCC
T ss_conf 687899999999996678962-14687899987688413878--992789877899-----------------8677557
Q ss_pred -CCCCCCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf -0544437878898859899999999780000488898350257757667884--7599998858985589899986773
Q 002574 121 -INPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPP--QLGSLSSLQYLDLYADSFSSNSGSL 197 (906)
Q Consensus 121 -l~~~l~~l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~--~l~~l~~L~~L~l~~n~~~~~~~~~ 197 (906)
+++++.++++|+.++++.+.+. .+|..++.+++|++|++++|.+.+.+|. .++++++|++|++++|.+......
T Consensus 68 ~l~~~l~~L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~- 144 (768)
T 3rgz_A 68 AVSSSLLSLTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV- 144 (768)
T ss_dssp HHHHHTTTCTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSC-
T ss_pred CCCHHHHCCCCCCCCCCCCCCCC--CCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCH-
T ss_conf 66965731680224678688867--870332457889989898985787078967872788999898968826774797-
Q ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 00024301112999996897798447777754688721899996998248768888996676799863599877985899
Q 002574 198 ALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNS 277 (906)
Q Consensus 198 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~ 277 (906)
..+.++++|++|+++.|.+++........+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+
T Consensus 145 -------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~ 214 (768)
T 3rgz_A 145 -------SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFST 214 (768)
T ss_dssp -------CSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCCS
T ss_pred -------HHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC---CCCCCCCCEEECCCCCCCC
T ss_conf -------785638899989897983588587155664358988989897880346578---4547868989892882788
Q ss_pred CCHHHHHCCCCCCEEEEECCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 98065536999979990225553348411028999996867798789998635431589999997558848754221122
Q 002574 278 AIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFD 357 (906)
Q Consensus 278 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 357 (906)
.+|. +..+++|++|++++|.+.+.++..+..+++|++|++++| .+.+..|.. .+++|+.|++++|.+++..+..+.
T Consensus 215 ~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~ 290 (768)
T 3rgz_A 215 GIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN-QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLS 290 (768)
T ss_dssp CCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSS-CCEESCCCC--CCTTCCEEECCSSEEEESCCCCSC
T ss_pred CCCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCC-CCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 7711-126999998979488587816577744888898989888-665716724--368789897917855772588888
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCHHCCC
Q ss_conf 67999999658988588787864410129988862323376356887834-79999988996857658843650100446
Q 002574 358 GFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSS-IGNLSSLRKLDLSYNGMNGTIPESFGKLS 436 (906)
Q Consensus 358 ~l~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~l~ 436 (906)
.. +++|++|++++|.+.+..|..++.+++|++|++++|.+.+.+|.. +..+++|+.|++++|.+.+.+|..+..++
T Consensus 291 ~~---~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 367 (768)
T 3rgz_A 291 GA---CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367 (768)
T ss_dssp TT---CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHT
T ss_pred HH---CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHH
T ss_conf 44---686889989689677842367755877667789788525737978872488887884847843762309898632
Q ss_pred -CCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCHHCCCCCCCC
Q ss_conf -6754116788866977767750155465866578987433542168876988833899004658988870000387644
Q 002574 437 -ELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELT 515 (906)
Q Consensus 437 -~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 515 (906)
+|+.+++++|.+.+..+. .+.. .....++.+++.+|.+.+..|.++..+++|+
T Consensus 368 ~~L~~L~Ls~N~l~~~~~~-~~~~-------------------------~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 421 (768)
T 3rgz_A 368 ASLLTLDLSSNNFSGPILP-NLCQ-------------------------NPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421 (768)
T ss_dssp TTCSEEECCSSEEEEECCT-TTTC-------------------------STTCCCCEEECCSSEEEEECCGGGGGCTTCC
T ss_pred CCCCEEECCCCCCCCCCCH-HHHH-------------------------CCCCCCCEEECCCCCCCCCCCHHHHCCCCCC
T ss_conf 2771998627874787676-6653-------------------------3247761898977846542487775689879
Q ss_pred EEECCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99913787647789136641277744998338703477987989997547845686375668977645662113444578
Q 002574 516 SVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFS 595 (906)
Q Consensus 516 ~L~l~~~~~~~~~p~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~L~~L~l~~n~l~ 595 (906)
.|++++|.+.+.+|. .+.. .++|+.|++++|.+.
T Consensus 422 ~L~Ls~N~l~~~~p~-~l~~---------------------------------------------l~~L~~L~L~~n~l~ 455 (768)
T 3rgz_A 422 SLHLSFNYLSGTIPS-SLGS---------------------------------------------LSKLRDLKLWLNMLE 455 (768)
T ss_dssp EEECCSSEEESCCCG-GGGG---------------------------------------------CTTCCEEECCSSCCC
T ss_pred EEECCCCCCCCCCCH-HHHC---------------------------------------------CCCCCEEECCCCCCC
T ss_conf 898958846685467-7744---------------------------------------------998898989788154
Q ss_pred CCCCCHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 99980010245310011134543345689777899997389766885845479883378995289488984544689588
Q 002574 596 GPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIPSSF 675 (906)
Q Consensus 596 ~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~ 675 (906)
+.+|..+.. +++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+
T Consensus 456 ~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 534 (768)
T 3rgz_A 456 GEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534 (768)
T ss_dssp SCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred CCCCHHHCC-CCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHH
T ss_conf 718978828-7773299901995137588788169989989753995189687688568999989897894337488777
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC----------------------CCCCCCCHHHHHCCCCCCEE
Q ss_conf 89999989987487146545500116999988976488----------------------37555607798608779589
Q 002574 676 GSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGN----------------------QLSGSLPLWISENLSSFFML 733 (906)
Q Consensus 676 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n----------------------~~~~~~p~~l~~~l~~L~~L 733 (906)
..+++|+.|++++|.+.+.+|..+.....+..+.+..+ .+.+..+..+.. ++.++.+
T Consensus 535 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~ 613 (768)
T 3rgz_A 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR-LSTRNPC 613 (768)
T ss_dssp GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG-GGGTCCS
T ss_pred CCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC-CCCCCCC
T ss_conf 088989989898884688279578604212232013454211113444322223322210013556323200-2321100
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEEECCCCCCCCCCCCCCCEEE
Q ss_conf 92377364336835449888878867788587787856334334625998520000346521378842111237421998
Q 002574 734 RLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSID 813 (906)
Q Consensus 734 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Ld 813 (906)
++..|.+.|.+|..+..+++|+.||+++|+++|.+|..+++++.| +.|+
T Consensus 614 ~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L-------------------------------~~L~ 662 (768)
T 3rgz_A 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL-------------------------------FILN 662 (768)
T ss_dssp CTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC-------------------------------CEEE
T ss_pred CCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCC-------------------------------CEEE
T ss_conf 113310046274334033566579785880155587788414157-------------------------------8784
Q ss_pred CCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC---CCCCCCCCCCCCCCCC
Q ss_conf 6888253358755441578978968477362126301439999996968689663369999---9999887557988998
Q 002574 814 LSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIPSL---PNFNDPSIYEGNPLLC 890 (906)
Q Consensus 814 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p~~---~~~~~~~~~~~n~~~c 890 (906)
|++|.++|.+|..++++++|+.|||++|+++|.+|..+..+++|++|++++|+++|.||.+ .+|+..+ |.|||++|
T Consensus 663 Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~-~~gN~~Lc 741 (768)
T 3rgz_A 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK-FLNNPGLC 741 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGG-GCSCTEEE
T ss_pred CCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHH-HCCCCHHC
T ss_conf 86880388789678477789989897880238688677578878978796881556089960102489777-56983210
Q ss_pred CCCCCCCCCCCC
Q ss_conf 999999999999
Q 002574 891 GAPLPTKCPGKH 902 (906)
Q Consensus 891 ~~~~~~~~~~~~ 902 (906)
|.|+. +|.++.
T Consensus 742 g~~l~-~C~~~~ 752 (768)
T 3rgz_A 742 GYPLP-RCDPSN 752 (768)
T ss_dssp STTSC-CCCSCC
T ss_pred CCCCC-CCCCCC
T ss_conf 88776-788876
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=554.33 Aligned_cols=642 Identities=28% Similarity=0.379 Sum_probs=496.1
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCH--HHHCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 0544437878898859899999999780--00048889835025775766788475-99998858985589899986773
Q 002574 121 INPSLLHLKYLDTLDLSLNDFEGAEIPE--YFGQLKNLRYLNLSFSSFSGEIPPQL-GSLSSLQYLDLYADSFSSNSGSL 197 (906)
Q Consensus 121 l~~~l~~l~~L~~L~Ls~~~~~~~~lp~--~l~~l~~L~~L~L~~~~~~~~~p~~l-~~l~~L~~L~l~~n~~~~~~~~~ 197 (906)
+++.++.+++|++|++++|.+.+. +|. .++.+++|++|++++|.+.+..|..+ .++++|++|++++|.+.+...
T Consensus 92 l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-- 168 (768)
T 3rgz_A 92 SVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV-- 168 (768)
T ss_dssp CCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETH--
T ss_pred CCHHHCCCCCCCEEECCCCCCCCC-CCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCC--
T ss_conf 703324578899898989857870-78967872788999898968826774797785638899989897983588587--
Q ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 00024301112999996897798447777754688721899996998248768888996676799863599877985899
Q 002574 198 ALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNS 277 (906)
Q Consensus 198 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~ 277 (906)
.....+.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+
T Consensus 169 ----~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~ 237 (768)
T 3rgz_A 169 ----VGWVLSDGCGELKHLAISGNKISGDVD-----VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSG 237 (768)
T ss_dssp ----HHHHHTTCCTTCCEEECCSSEEESCCB-----CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCS
T ss_pred ----HHHHHHCCCCCCCEEECCCCCCCCCCC-----CCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCEEECCCCCCCC
T ss_conf ----155664358988989897880346578-----45478689898928827887711--1269999989794885878
Q ss_pred CCHHHHHCCCCCCEEEEECCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHCC-CCCCEEECCCCCCCCCCCCCC
Q ss_conf 9806553699997999022555334841102899999686779878999863543158-999999755884875422112
Q 002574 278 AIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGIL-RRLKSLDLSANNLNGEVHEFF 356 (906)
Q Consensus 278 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l 356 (906)
.+|..+..+++|++|++++|.+.+.+|.. .+++|++|++++| .+.+.+|..+... ++|+.|++++|.+++..+..+
T Consensus 238 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n-~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 314 (768)
T 3rgz_A 238 DFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314 (768)
T ss_dssp CHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSS-EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG
T ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCC-CCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHH
T ss_conf 16577744888898989888665716724--3687898979178-55772588888446868899896896778423677
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCHH-CCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCHHC
Q ss_conf 267999999658988588787864410-12998886232337635688783479999-9889968576588436501004
Q 002574 357 DGFSGRPNNLEYLDLSSNSLEGELPKS-LGNLKNLQYLRLSGNSFWGSIPSSIGNLS-SLRKLDLSYNGMNGTIPESFGK 434 (906)
Q Consensus 357 ~~l~~~~~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~L~~n~~~~~~~~~~~~ 434 (906)
..+. +|++|++++|.+.+.+|.. +..+++|++|++++|.+.+.+|..+..++ +|+.|++++|.+.+.++..+..
T Consensus 315 ~~l~----~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 315 GSCS----LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp GGCT----TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred HCCC----CCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 5587----766778978852573797887248888788484784376230989863227719986278747876766653
Q ss_pred --CCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCHHCCCCC
Q ss_conf --466754116788866977767750155465866578987433542168876988833899004658988870000387
Q 002574 435 --LSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQT 512 (906)
Q Consensus 435 --l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 512 (906)
++.|+.+++.+|.+.+..+. .+.++++|+.+++++| .+.+..|..+..++
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N---------------------------~l~~~~p~~l~~l~ 442 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFN---------------------------YLSGTIPSSLGSLS 442 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCG-GGGGCTTCCEEECCSS---------------------------EEESCCCGGGGGCT
T ss_pred CCCCCCCEEECCCCCCCCCCCH-HHHCCCCCCEEECCCC---------------------------CCCCCCCHHHHCCC
T ss_conf 3247761898977846542487-7756898798989588---------------------------46685467774499
Q ss_pred CCCEEECCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 64499913787647789136641277744998338703477987989997547845686375668977645662113444
Q 002574 513 ELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDN 592 (906)
Q Consensus 513 ~L~~L~l~~~~~~~~~p~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~L~~L~l~~n 592 (906)
+|+.+++++|.+.+.+|. .+.. .++|++|++++|.+.+..|..+.. +++|+.|++++|
T Consensus 443 ~L~~L~L~~n~l~~~~p~-~~~~-l~~L~~L~L~~N~l~~~~p~~l~~--------------------l~~L~~L~L~~N 500 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQ-ELMY-VKTLETLILDFNDLTGEIPSGLSN--------------------CTNLNWISLSNN 500 (768)
T ss_dssp TCCEEECCSSCCCSCCCG-GGGG-CTTCCEEECCSSCCCSCCCGGGGG--------------------CTTCCEEECCSS
T ss_pred CCCEEECCCCCCCCCCCH-HHCC-CCCCEEEEECCCCCCCCCCHHHHC--------------------CCCCCEEECCCC
T ss_conf 889898978815471897-8828-777329990199513758878816--------------------998998975399
Q ss_pred CCCCCCCCHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCCC
Q ss_conf 57899980010245310011134543345689777899997389766885845479883378995289488984-54468
Q 002574 593 RFSGPLPENIGSLMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNS-LTGSI 671 (906)
Q Consensus 593 ~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~-l~~~~ 671 (906)
.+.+.+|..+.. +++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+.....+..+.+..+. +....
T Consensus 501 ~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~ 579 (768)
T 3rgz_A 501 RLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579 (768)
T ss_dssp CCCSCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEE
T ss_pred CCCCCCCHHHHC-CCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCC
T ss_conf 518968768856-8999989897894337488777088989989898884688279578604212232013454211113
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 95888999998998748714654550011699998897648837555607798608779589923773643368354498
Q 002574 672 PSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNL 751 (906)
Q Consensus 672 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~l~~l 751 (906)
.............. -.+.+..+..+..++.+..+++..|.+.|.+|..+.. +++|+.|++++|+++|.+|..++.+
T Consensus 580 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~-l~~L~~LdLs~N~l~g~ip~~l~~l 655 (768)
T 3rgz_A 580 NDGMKKECHGAGNL---LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN-NGSMMFLDMSYNMLSGYIPKEIGSM 655 (768)
T ss_dssp CCSCCTTCCSSEEE---EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS-SBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred CCCCCCCCCCCCCC---CCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHC-CCCCCEEECCCCCCCCCCCHHHHCC
T ss_conf 44432222332221---0013556323200232110011331004627433403-3566579785880155587788414
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCC
Q ss_conf 88878867788587787856334334625998520000346521378842111237421998688825335875544157
Q 002574 752 QNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLS 831 (906)
Q Consensus 752 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~n~l~~~~p~~l~~l~ 831 (906)
+.|+.|++++|.++|.+|..+++++.| +.|||++|+++|.+|..+++++
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L-------------------------------~~LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDEVGDLRGL-------------------------------NILDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTC-------------------------------CEEECCSSCCEECCCGGGGGCC
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCC-------------------------------CEEECCCCCCCCCCCHHHHCCC
T ss_conf 157878486880388789678477789-------------------------------9898978802386886775788
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCC
Q ss_conf 89789684773621263014399999969686896-6336
Q 002574 832 ALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNN-LAGK 870 (906)
Q Consensus 832 ~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~ls~N~-l~~~ 870 (906)
+|+.|++++|+++|.||+. ..+..+....+.+|+ ++|.
T Consensus 705 ~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 705 MLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp CCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred CCCEEECCCCCCCCCCCCC-HHHCCCCHHHHCCCCHHCCC
T ss_conf 7897879688155608996-01024897775698321088
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=461.25 Aligned_cols=591 Identities=23% Similarity=0.256 Sum_probs=363.1
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 00544437878898859899999999780000488898350257757667884759999885898558989998677300
Q 002574 120 KINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLAL 199 (906)
Q Consensus 120 ~l~~~l~~l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 199 (906)
.+|..+. +++++|++++|.+.+. .+..+.++++|++|++++|.+.+..|..++++++|++|++++|.+...+..
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--- 91 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK--- 91 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT---
T ss_pred CCCCCCC--CCCCEEECCCCCCCCC-CHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHH---
T ss_conf 2641248--8876888989977875-978871787675887889964856977874066768888999856756854---
Q ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 02430111299999689779844777775468872189999699824876888899667679986359987798589998
Q 002574 200 HAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAI 279 (906)
Q Consensus 200 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~ 279 (906)
.+.++++|++|++++|.+...++. . +..+++|++|++++|.+.+..
T Consensus 92 ------~~~~l~~L~~L~L~~n~l~~~~~~---~-------------------------~~~l~~L~~L~Ls~n~l~~~~ 137 (680)
T 1ziw_A 92 ------TFAFCTNLTELHLMSNSIQKIKNN---P-------------------------FVKQKNLITLDLSHNGLSSTK 137 (680)
T ss_dssp ------TTTTCTTCSEEECCSSCCCCCCSC---T-------------------------TTTCTTCCEEECCSSCCSCCC
T ss_pred ------HHCCCCCCCEEECCCCCCCCCCHH---H-------------------------CCCCCCCCEEECCCCCCCCCC
T ss_conf ------530388889898989966853966---7-------------------------415678888989899524667
Q ss_pred HHHHHCCCCCCEEEEECCCCCCCCCHHHC--CCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 06553699997999022555334841102--8999996867798789998635431589999997558848754221122
Q 002574 280 PPWLFSLTSLTKLYLRWNFFTGHIPNEFA--NLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGEVHEFFD 357 (906)
Q Consensus 280 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 357 (906)
+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++| .+.+..+..+..+++|+.+++.++.+.......+.
T Consensus 138 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 216 (680)
T 1ziw_A 138 LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216 (680)
T ss_dssp CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC-CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHH
T ss_pred CHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCC-CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 21112455677797458843652978862446663217988898-25655815553223445543056646805677787
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCHHCCCCCC--CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHCC
Q ss_conf 67999999658988588787864410129988--8623233763568878347999998899685765884365010044
Q 002574 358 GFSGRPNNLEYLDLSSNSLEGELPKSLGNLKN--LQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESFGKL 435 (906)
Q Consensus 358 ~l~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~--L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l 435 (906)
... ..++|+.|++++|.+.+..|.++..++. |+.|++++|.+.+..+..++.+++|+.|++++|.+.+..+..+..+
T Consensus 217 ~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (680)
T 1ziw_A 217 LEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295 (680)
T ss_dssp HHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTC
T ss_pred HHH-HHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCC
T ss_conf 775-3151008874577436468667514676778887787887675680211674105685577885676586562678
Q ss_pred CCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCHHCCCCCCCC
Q ss_conf 66754116788866977767750155465866578987433542168876988833899004658988870000387644
Q 002574 436 SELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELT 515 (906)
Q Consensus 436 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 515 (906)
++|+.+++.++...+.+... .++.+. ...+..+++
T Consensus 296 ~~L~~L~L~~~~~~~~~~~~---~lp~i~----------------------------------------~~~~~~l~~-- 330 (680)
T 1ziw_A 296 FNVRYLNLKRSFTKQSISLA---SLPKID----------------------------------------DFSFQWLKC-- 330 (680)
T ss_dssp TTCCEEECTTCBCCC---------CCEEC----------------------------------------TTTTTTCTT--
T ss_pred CCCCEEECCCHHHHCCCCCC---CCCCCC----------------------------------------HHHCCCCCC--
T ss_conf 88557736331321333335---545438----------------------------------------656246777--
Q ss_pred EEECCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99913787647789136641277744998338703477987989-99754784568637566897764566211344457
Q 002574 516 SVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMN-SPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRF 594 (906)
Q Consensus 516 ~L~l~~~~~~~~~p~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~ls~n~~~~~~~~~~~~L~~L~l~~n~l 594 (906)
|++|++++|.+.+..+..+. .++|+++++++|.+...
T Consensus 331 ------------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~------------------ 368 (680)
T 1ziw_A 331 ------------------------LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR------------------ 368 (680)
T ss_dssp ------------------------CCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCC------------------
T ss_pred ------------------------CCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHH------------------
T ss_conf ------------------------88887989826878855740656872898879801443------------------
Q ss_pred CCCCCCHHHC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 8999800102--45310011134543345689777899997389766885845479-88337899528948898454468
Q 002574 595 SGPLPENIGS--LMPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGEFP-NCWYHSQMFWGIDISNNSLTGSI 671 (906)
Q Consensus 595 ~~~~p~~~~~--~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~L~~n~l~~~~ 671 (906)
.++...+. ..+.++.|++++|.+++..+..+..+++|+.|++++|.+.+.++ ..+..+++|+.|++++|.+.+..
T Consensus 369 --~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 369 --TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446 (680)
T ss_dssp --EECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC
T ss_pred --HCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEC
T ss_conf --235322024556867668899997776775442077888888677875754357553257546127844899754227
Q ss_pred CCCCCCCCCCCEEECCCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCC----
Q ss_conf 958889999989987487146--54550011699998897648837555607798608779589923773643368----
Q 002574 672 PSSFGSLRSLSVLLLSNNNLS--GGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIP---- 745 (906)
Q Consensus 672 ~~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~---- 745 (906)
+..|..+++|+.|++++|.+. +..|..+..+++|+.|++++|+++ .++...+..+++|++|++++|.+++..+
T Consensus 447 ~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 525 (680)
T 1ziw_A 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANP 525 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTST
T ss_pred HHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCCCCCHHHCC
T ss_conf 64550075431011014644225667764555787899989999877-67944634553468885889973000000046
Q ss_pred ----CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf ----3544988887886778858778785633433462599852000034652137884211123742199868882533
Q 002574 746 ----QRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTG 821 (906)
Q Consensus 746 ----~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~n~l~~ 821 (906)
..+..+++|+.|++++|.++...+..|..++.| +.||+++|++++
T Consensus 526 ~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L-------------------------------~~L~Ls~N~l~~ 574 (680)
T 1ziw_A 526 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL-------------------------------KIIDLGLNNLNT 574 (680)
T ss_dssp TSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------------------------CEEECCSSCCCC
T ss_pred CCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCC-------------------------------CEEECCCCCCCC
T ss_conf 7741423379988888899997887797773466675-------------------------------223899997776
Q ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCC
Q ss_conf 5875544157897896847736212630143-999999696868966336999
Q 002574 822 QIPDEIGNLSALHILNLSHNQLSGAIPQSLS-SLASLSKLNLSFNNLAGKIPS 873 (906)
Q Consensus 822 ~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~-~l~~L~~L~ls~N~l~~~~p~ 873 (906)
..+..|.++++|+.|++++|++++..|..+. .+++|+.+++++|++...-+.
T Consensus 575 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 79768378988888989999687059668301146657798318970257766
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=446.54 Aligned_cols=579 Identities=25% Similarity=0.269 Sum_probs=353.8
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCC
Q ss_conf 95899721795222479867886777765562005444378788988598999999997800004888983502577576
Q 002574 88 GHVTQLNLRNPYQLINGGVGDSTAYKGSCLGGKINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFS 167 (906)
Q Consensus 88 ~~v~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~ 167 (906)
.+++.|+++++ .+.+..+..+.++++|++|++++|.+.+. .|..++++++|++|++++|.+.
T Consensus 25 ~~l~~L~Ls~n-----------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 25 TNITVLNLTHN-----------------QLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp TTCSEEECCSS-----------------CCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCC
T ss_pred CCCCEEECCCC-----------------CCCCCCHHHHHCCCCCCEEECCCCCCCCC-CHHHHHCCCCCCEEECCCCCCC
T ss_conf 88768889899-----------------77875978871787675887889964856-9778740667688889998567
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCCEEECCC
Q ss_conf 67884759999885898558989998677300024301112999996897798447777754688721899996998248
Q 002574 168 GEIPPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHY 247 (906)
Q Consensus 168 ~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 247 (906)
...+..++++++|++|++++|.+...+.. .+.++++|++|+++.|.++..... .+..+++|++|++++
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~---------~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNN---------PFVKQKNLITLDLSHNGLSSTKLG---TQVQLENLQELLLSN 154 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCSC---------TTTTCTTCCEEECCSSCCSCCCCC---SSSCCTTCCEEECCS
T ss_pred CCCHHHHCCCCCCCEEECCCCCCCCCCHH---------HCCCCCCCCEEECCCCCCCCCCCH---HHCCCCCCCEEECCC
T ss_conf 56854530388889898989966853966---------741567888898989952466721---112455677797458
Q ss_pred CCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCHHHCCCCCCCEEECCCCCCCCC
Q ss_conf 7688889966-767998635998779858999806553699997999022555334841102899999686779878999
Q 002574 248 CQLQGIPLSL-PFINFTSISVLDLSENSFNSAIPPWLFSLTSLTKLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGG 326 (906)
Q Consensus 248 ~~l~~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~ 326 (906)
|.+++.+... ....+++|+.|++++|.+.+..+..+..+++|+.+++.++.+.......+.
T Consensus 155 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~------------------ 216 (680)
T 1ziw_A 155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC------------------ 216 (680)
T ss_dssp SCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHH------------------
T ss_pred CCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH------------------
T ss_conf 84365297886244666321798889825655815553223445543056646805677787------------------
Q ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 86354315899999975588487542211226799999965898858878786441012998886232337635688783
Q 002574 327 QLPKLFGILRRLKSLDLSANNLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPS 406 (906)
Q Consensus 327 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~ 406 (906)
.. ...++|+.|++++|.+.+..+..+..+. .++|+.|++++|.+.+..+..+..+++|+++++++|.+.+..+.
T Consensus 217 ---~~-l~~~~L~~L~L~~n~l~~~~~~~~~~l~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (680)
T 1ziw_A 217 ---LE-LANTSIRNLSLSNSQLSTTSNTTFLGLK--WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290 (680)
T ss_dssp ---HH-HTTSCCCEEECTTSCCCEECTTTTGGGG--GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT
T ss_pred ---HH-HHHCCCCEEECCCCCCCCCCHHHHHCCC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHH
T ss_conf ---77-5315100887457743646866751467--67788877878876756802116741056855778856765865
Q ss_pred CCCCCCCCCEEECCCCCCCCCC-----C----CCHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCEE
Q ss_conf 4799999889968576588436-----5----010044667541167888669777677501554658665789874335
Q 002574 407 SIGNLSSLRKLDLSYNGMNGTI-----P----ESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFV 477 (906)
Q Consensus 407 ~l~~l~~L~~L~L~~n~~~~~~-----~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 477 (906)
.+..+++|+.|+++++...+.+ | ..+..+++|+.+++++|.+.+..+. .|..+++|+.+++++|
T Consensus 291 ~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n------ 363 (680)
T 1ziw_A 291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN-MFTGLINLKYLSLSNS------ 363 (680)
T ss_dssp TTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT-TTTTCTTCCEEECTTC------
T ss_pred HHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHH-HHCCCCCCCEEECCCC------
T ss_conf 626788855773633132133333554543865624677788887989826878855-7406568728988798------
Q ss_pred EECCCCCCCCCCCCEEEEECCCCCCCCCHHCCCCCCCCEEECCCCCCCC-CCCHHHHHHC-CCCCCEEECCCCCCCCCCC
Q ss_conf 4216887698883389900465898887000038764499913787647-7891366412-7774499833870347798
Q 002574 478 FNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQTELTSVILRNVGISD-TIPGDWFSKL-SSEITYLILSNNQIKGKLP 555 (906)
Q Consensus 478 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~p~~~~~~~-~~~L~~L~l~~n~l~~~~~ 555 (906)
.+.. .++...+... .++++.+++++|.+.+..+
T Consensus 364 ---------------------------------------------~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~ 398 (680)
T 1ziw_A 364 ---------------------------------------------FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398 (680)
T ss_dssp ---------------------------------------------BSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT
T ss_pred ---------------------------------------------CHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECH
T ss_conf ---------------------------------------------01443235322024556867668899997776775
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf 798999754784568637566897764566211344457899980010245310011134543345689-7778999973
Q 002574 556 RQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWNQLSGRIP-SSVCNLEDLQ 634 (906)
Q Consensus 556 ~~~~~~~L~~L~ls~n~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~ 634 (906)
..+ ..+++|+.|++++|.+.+.++ ..+.++++|+
T Consensus 399 ~~~---------------------------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~ 433 (680)
T 1ziw_A 399 DAF---------------------------------------------SWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433 (680)
T ss_dssp TTT---------------------------------------------TTCTTCCEEECCSSCCEEECCSGGGTTCTTCC
T ss_pred HHH---------------------------------------------HCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 442---------------------------------------------07788888867787575435755325754612
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 8976688584547988337899528948898454--46895888999998998748714654550011699998897648
Q 002574 635 ILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLT--GSIPSSFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGG 712 (906)
Q Consensus 635 ~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 712 (906)
.|++++|.+.+..+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++
T Consensus 434 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~ 513 (680)
T 1ziw_A 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513 (680)
T ss_dssp EEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 78448997542276455007543101101464422566776455578789998999987767944634553468885889
Q ss_pred CCCCCCC-------CHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8375556-------077986087795899237736433683544988887886778858778785633433462599852
Q 002574 713 NQLSGSL-------PLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSE 785 (906)
Q Consensus 713 n~~~~~~-------p~~l~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~~~~~~ 785 (906)
|++++.. |...+..+++|+.|++++|.+....+..|..+++|+.|++++|.+++..+..|.++++|
T Consensus 514 N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L------- 586 (680)
T 1ziw_A 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL------- 586 (680)
T ss_dssp SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred CCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-------
T ss_conf 9730000000467741423379988888899997887797773466675223899997776797683789888-------
Q ss_pred CHHEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHH-CCCCCCEEECCCCCCCCCCC
Q ss_conf 0000346521378842111237421998688825335875544-15789789684773621263
Q 002574 786 VFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIG-NLSALHILNLSHNQLSGAIP 848 (906)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~ip 848 (906)
+.|++++|++++..+..+. .+++|+.|++++|.+...-+
T Consensus 587 ------------------------~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 587 ------------------------KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp ------------------------CEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred ------------------------CEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf ------------------------8898999968705966830114665779831897025776
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=423.27 Aligned_cols=110 Identities=18% Similarity=0.262 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHHHHCCCC-CC-------CCCCC-CCCCCCCC---CCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 9389899999988608899-99-------97899-98999773---3248339999589972179522247986788677
Q 002574 45 CLDAEREGLLAFKESLTDP-SG-------RLSSW-VGQDCCKW---NGVYCNNQSGHVTQLNLRNPYQLINGGVGDSTAY 112 (906)
Q Consensus 45 ~~~~~~~~l~~~~~~~~~~-~~-------~~~~W-~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~ 112 (906)
....|+.||.++++++.++ +. ..++| .+.+||.| .||+|+.. |||+.|+|+++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~-------------- 91 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGF-------------- 91 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTS--------------
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC-CCEEEEEECCC--------------
T ss_conf 677889999999997589974547767765788777998000147798487678-97889984276--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCC------C-----CCCCHHHHCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 776556200544437878898859899999------9-----99780000488898350257757667884759
Q 002574 113 KGSCLGGKINPSLLHLKYLDTLDLSLNDFE------G-----AEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLG 175 (906)
Q Consensus 113 ~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~~------~-----~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~ 175 (906)
.+.|.+|++++++++|++|++++|.+. + ..+|... +..|+ ++++.+.+.+..|..++
T Consensus 92 ---~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 92 ---GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFS 159 (636)
T ss_dssp ---CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSC
T ss_pred ---CCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHH-HHHHHHHHCCCCHHHHH
T ss_conf ---6577288578568451189876885123774334532356733888--88887-65777554117066677
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=414.89 Aligned_cols=526 Identities=22% Similarity=0.231 Sum_probs=291.6
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 00544437878898859899999999780000488898350257757667884759999885898558989998677300
Q 002574 120 KINPSLLHLKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEIPPQLGSLSSLQYLDLYADSFSSNSGSLAL 199 (906)
Q Consensus 120 ~l~~~l~~l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 199 (906)
.+|..+. .++++|++++|.+++. .|..+.++++|++|++++|.+.+..|..++++++|++|++++|.+....+
T Consensus 26 ~iP~~l~--~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---- 98 (606)
T 3t6q_A 26 EIPGTLP--NSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE---- 98 (606)
T ss_dssp SCCTTSC--TTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT----
T ss_pred CCCCCCC--CCCCEEECCCCCCCCC-CHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCH----
T ss_conf 2867789--8675898158734717-96672567665289788983552485113684336764488985654586----
Q ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 02430111299999689779844777775468872189999699824876888899667679986359987798589998
Q 002574 200 HAQNLNWLSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAI 279 (906)
Q Consensus 200 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~ 279 (906)
..+.++++|++|++++|.++..+.. .+..+++|++|++++|.+.++.... +..+++|++|++++|.+.+..
T Consensus 99 -----~~~~~l~~L~~L~L~~n~i~~l~~~---~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~ 169 (606)
T 3t6q_A 99 -----TALSGPKALKHLFFIQTGISSIDFI---PLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLS 169 (606)
T ss_dssp -----TTTSSCTTCCEEECTTSCCSCGGGS---CCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEEC
T ss_pred -----HHHCCCCCCCEEECCCCCCCCCCCC---HHCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCC
T ss_conf -----5523442153765212676657810---1223782238988798341147654-568765687776568445549
Q ss_pred HHHHHCCCCCC--EEEEECCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC-----C
Q ss_conf 06553699997--9990225553348411028999996867798789998635431589999997558848754-----2
Q 002574 280 PPWLFSLTSLT--KLYLRWNFFTGHIPNEFANLKLLEVLDLSNNLDLGGQLPKLFGILRRLKSLDLSANNLNGE-----V 352 (906)
Q Consensus 280 ~~~l~~l~~L~--~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-----~ 352 (906)
+..+..+++|+ .|++++|.+.+..+..+. ...|+.|++++|. ..+..+..+..+....+....+... .
T Consensus 170 ~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~----~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~ 244 (606)
T 3t6q_A 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQ----NLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244 (606)
T ss_dssp HHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCS----CHHHHHHHTTTCEEEEEECCCCTTSCCCCCC
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCHHHHH-HCCCCCCCCCCCH----HHHHHHHHCCCCCHHHEECHHHCCCCCCCCC
T ss_conf 6563322156403896679814754866730-0100135567726----6777765133564422002011026412268
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCH
Q ss_conf 21122679999996589885887878644101299888623233763568878347999998899685765884365010
Q 002574 353 HEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNGTIPESF 432 (906)
Q Consensus 353 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~ 432 (906)
...+..+.. .+|+.+++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..+..+
T Consensus 245 ~~~~~~l~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~ 321 (606)
T 3t6q_A 245 PAVFEGLCE--MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISA 321 (606)
T ss_dssp GGGGGGGGG--SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCG
T ss_pred HHHHCHHHC--CCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHH
T ss_conf 667430320--75059994457658557777445667888956288267-778214165468889771687686760233
Q ss_pred HCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCHHCCCCC
Q ss_conf 04466754116788866977767750155465866578987433542168876988833899004658988870000387
Q 002574 433 GKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPTKKFVFNVSYNWVPPFRLKSIQIENCQVGPSFPVWLQVQT 512 (906)
Q Consensus 433 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 512 (906)
..+++|+.+++++|.+.+.++...+.
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~~~~~------------------------------------------------------ 347 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLELGTGCLE------------------------------------------------------ 347 (606)
T ss_dssp GGCTTCSEEECCSCSSCCBCCSSTTT------------------------------------------------------
T ss_pred HCCCCCCEEECCCCCCCCCCCHHHHH------------------------------------------------------
T ss_conf 01576898889899744434624550------------------------------------------------------
Q ss_pred CCCEEECCCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 64499913787647789136641277744998338703477987989997547845686375668977645662113444
Q 002574 513 ELTSVILRNVGISDTIPGDWFSKLSSEITYLILSNNQIKGKLPRQMNSPNLRSIDLSSNHFEGTLPLWSTNADELFLQDN 592 (906)
Q Consensus 513 ~L~~L~l~~~~~~~~~p~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~L~~L~l~~n 592 (906)
T Consensus 348 -------------------------------------------------------------------------------- 347 (606)
T 3t6q_A 348 -------------------------------------------------------------------------------- 347 (606)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCHHHCCCCCCEEECCCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 5789998001024531001113454334568--97778999973897668858454798833789952894889845446
Q 002574 593 RFSGPLPENIGSLMPRLQRLYLSWNQLSGRI--PSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGS 670 (906)
Q Consensus 593 ~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 670 (906)
.+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus 348 ------------~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 415 (606)
T 3t6q_A 348 ------------NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415 (606)
T ss_dssp ------------TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred ------------CCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC
T ss_conf ------------66758988788996664567522105678889898989967757888734774577687888867775
Q ss_pred CCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCC---CCC
Q ss_conf 895-8889999989987487146545500116999988976488375556077986087795899237736433---683
Q 002574 671 IPS-SFGSLRSLSVLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGD---IPQ 746 (906)
Q Consensus 671 ~~~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~~l~~L~~L~L~~n~l~~~---~~~ 746 (906)
.+. .+..+++|+.|++++|.+.+..|..+..++ +|++|++++|.+.+. .+.
T Consensus 416 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------------------------~L~~L~L~~n~l~~~~~~~~~ 470 (606)
T 3t6q_A 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP-------------------------ALQHLNLQGNHFPKGNIQKTN 470 (606)
T ss_dssp TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT-------------------------TCCEEECTTCBCGGGEECSSC
T ss_pred CCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCC-------------------------CCCEEECCCCCCCCCCCCCCH
T ss_conf 6521241765588898989855776877873788-------------------------788898989988854345431
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCHH
Q ss_conf 54498888788677885877878563343346259985200003465213788421112374219986888253358755
Q 002574 747 RLCNLQNLHIIDLSHNNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDE 826 (906)
Q Consensus 747 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~n~l~~~~p~~ 826 (906)
.+..+++|+.|++++|.+++..|..|+.++.| +.|++++|++++..|..
T Consensus 471 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------------------------~~L~Ls~N~l~~~~~~~ 519 (606)
T 3t6q_A 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM-------------------------------NHVDLSHNRLTSSSIEA 519 (606)
T ss_dssp GGGGCTTCCEEECTTSCCCEECTTTTTTCTTC-------------------------------CEEECCSSCCCGGGGGG
T ss_pred HHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-------------------------------CEEECCCCCCCCCCHHH
T ss_conf 24048876688799996670686463265678-------------------------------88989898068689668
Q ss_pred HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 4415789789684773621263014399999969686896633699
Q 002574 827 IGNLSALHILNLSHNQLSGAIPQSLSSLASLSKLNLSFNNLAGKIP 872 (906)
Q Consensus 827 l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~ls~N~l~~~~p 872 (906)
+.+++.| .|++++|++++..|..+..+++|+++++++|++.+..+
T Consensus 520 l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 520 LSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred HCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 4756651-89876894142687662567787889677998616677
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=414.15 Aligned_cols=300 Identities=24% Similarity=0.305 Sum_probs=224.5
Q ss_pred CCCEEECCCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEECCCCC
Q ss_conf 744998338703477987989-9975478456863756689776456621134445789998001024531001113454
Q 002574 539 EITYLILSNNQIKGKLPRQMN-SPNLRSIDLSSNHFEGTLPLWSTNADELFLQDNRFSGPLPENIGSLMPRLQRLYLSWN 617 (906)
Q Consensus 539 ~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~ls~n~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~n 617 (906)
+++.+++++|.+.+..+..+. .++|+++++++|.+. .+|..+ ..+++|++|++++|
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----------------------~lp~~l-~~l~~L~~L~l~~n 311 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS----------------------ELPSGL-VGLSTLKKLVLSAN 311 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS----------------------CCCSSC-CSCTTCCEEECTTC
T ss_pred CEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC----------------------CCCHHH-CCCCCCCEEECCCC
T ss_conf 5059994457658557777445667888956288267----------------------778214-16546888977168
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 3345689777899997389766885845479-88337899528948898454468--95888999998998748714654
Q 002574 618 QLSGRIPSSVCNLEDLQILSIRSNKLSGEFP-NCWYHSQMFWGIDISNNSLTGSI--PSSFGSLRSLSVLLLSNNNLSGG 694 (906)
Q Consensus 618 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~ 694 (906)
.+.+..+..+..+++|+.|++++|.+.+.++ ..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+.+.
T Consensus 312 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 391 (606)
T 3t6q_A 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391 (606)
T ss_dssp CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE
T ss_pred CCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCC
T ss_conf 76867602330157689888989974443462455066758988788996664567522105678889898989967757
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC---CCCC
Q ss_conf 5500116999988976488375556077986087795899237736433683544988887886778858778---7856
Q 002574 695 IPCSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSHNNFSGA---IPRC 771 (906)
Q Consensus 695 ~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~---~p~~ 771 (906)
.|..+..+++|+.|++++|++.+..+...+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++. .+..
T Consensus 392 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 471 (606)
T 3t6q_A 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471 (606)
T ss_dssp CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCG
T ss_pred CHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHH
T ss_conf 88873477457768788886777565212417655888989898557768778737887888989899888543454312
Q ss_pred CCCCCCCCCCCCCCCHHEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 33433462599852000034652137884211123742199868882533587554415789789684773621263014
Q 002574 772 IGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHNQLSGAIPQSL 851 (906)
Q Consensus 772 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l 851 (906)
+..++.| +.|++++|.+++..|..++++++|+.|++++|++++.+|..+
T Consensus 472 ~~~l~~L-------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 520 (606)
T 3t6q_A 472 LQTLGRL-------------------------------EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520 (606)
T ss_dssp GGGCTTC-------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGG
T ss_pred HCCCCCC-------------------------------CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHH
T ss_conf 4048876-------------------------------688799996670686463265678889898980686896684
Q ss_pred CCCCCCCEEECCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCC
Q ss_conf 39999996968689663369999----99998875579889989999
Q 002574 852 SSLASLSKLNLSFNNLAGKIPSL----PNFNDPSIYEGNPLLCGAPL 894 (906)
Q Consensus 852 ~~l~~L~~L~ls~N~l~~~~p~~----~~~~~~~~~~~n~~~c~~~~ 894 (906)
..+..| ++++++|++.+..|.. ....... +.|||+.|.|+.
T Consensus 521 ~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~-l~~N~~~c~c~~ 565 (606)
T 3t6q_A 521 SHLKGI-YLNLASNHISIILPSLLPILSQQRTIN-LRQNPLDCTCSN 565 (606)
T ss_dssp TTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE-CTTCCEECSGGG
T ss_pred CCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEE-CCCCCCCCCCCC
T ss_conf 756651-898768941426876625677878896-779986166775
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=413.74 Aligned_cols=233 Identities=21% Similarity=0.210 Sum_probs=189.9
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 53100111345433456897778999973897668858454--7988337899528948898454468958889999989
Q 002574 606 MPRLQRLYLSWNQLSGRIPSSVCNLEDLQILSIRSNKLSGE--FPNCWYHSQMFWGIDISNNSLTGSIPSSFGSLRSLSV 683 (906)
Q Consensus 606 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 683 (906)
++.|+.|++++|...+.. .+..+++|+.|++++|.+++. .+..+..+++|+.|++++|.+.+ ++..+..+++|+.
T Consensus 327 l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~ 403 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQH 403 (606)
T ss_dssp CSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCE
T ss_pred CCCCCEEECCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC-CHHHCCCCCCCCE
T ss_conf 875564454478685310--0024898887977587368775201221467755486788995300-0554068888896
Q ss_pred EECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCC
Q ss_conf 9874871465455-0011699998897648837555607798608779589923773643-3683544988887886778
Q 002574 684 LLLSNNNLSGGIP-CSLQNCTGLTSIDLGGNQLSGSLPLWISENLSSFFMLRLRSNLLSG-DIPQRLCNLQNLHIIDLSH 761 (906)
Q Consensus 684 L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~~~~~~p~~l~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~ 761 (906)
|++++|.+.+..+ ..+..+++|+.|++++|++.+..|..+.. +++|+.|++++|.+.+ .+|..+..+++|+.|++++
T Consensus 404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG-LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCC-CCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCC
T ss_conf 5898870587537645646213788989689787433555347-787898989898379854677604578899898988
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCC
Q ss_conf 85877878563343346259985200003465213788421112374219986888253358755441578978968477
Q 002574 762 NNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLSALHILNLSHN 841 (906)
Q Consensus 762 n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~n~l~~~~p~~l~~l~~L~~L~Ls~n 841 (906)
|.+++..|..++.++.| +.|++++|++++.+|..+.++++|+.|++++|
T Consensus 483 n~l~~~~~~~~~~l~~L-------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 483 CQLEQISWGVFDTLHRL-------------------------------QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp SCCCEECTTTTTTCTTC-------------------------------CEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred CCCCCCCHHHHCCCCCC-------------------------------CEEECCCCCCCCCCHHHCCCCCCCCEEECCCC
T ss_conf 85776486561546468-------------------------------98989899578748777068876898889898
Q ss_pred CCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCC
Q ss_conf 36212630143999-9996968689663369999
Q 002574 842 QLSGAIPQSLSSLA-SLSKLNLSFNNLAGKIPSL 874 (906)
Q Consensus 842 ~l~~~ip~~l~~l~-~L~~L~ls~N~l~~~~p~~ 874 (906)
+++ .+|..+..++ +|+++++++|++.+..|..
T Consensus 532 ~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 532 RIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp CCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CCC-CCCHHHHHHCCCCCEEECCCCCCCCCCCCH
T ss_conf 376-668767521021748876289866477648
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=406.18 Aligned_cols=208 Identities=22% Similarity=0.235 Sum_probs=142.3
Q ss_pred CCCCEEECCCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCC
Q ss_conf 53100111345433456--89777899997389766885845479883378995289488984544689-5888999998
Q 002574 606 MPRLQRLYLSWNQLSGR--IPSSVCNLEDLQILSIRSNKLSGEFPNCWYHSQMFWGIDISNNSLTGSIP-SSFGSLRSLS 682 (906)
Q Consensus 606 ~~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~ 682 (906)
+++|+.|++++|.+++. .+..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+.+..+ ..+..+++|+
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred CCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC-CHHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCC
T ss_conf 898887977587368775201221467755486788995300-0554068888896589887058753764564621378
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 998748714654550011699998897648837555-6077986087795899237736433683544988887886778
Q 002574 683 VLLLSNNNLSGGIPCSLQNCTGLTSIDLGGNQLSGS-LPLWISENLSSFFMLRLRSNLLSGDIPQRLCNLQNLHIIDLSH 761 (906)
Q Consensus 683 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~-~p~~l~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 761 (906)
.|++++|.+.+..|..+..+++|+.|++++|++.+. +|..+.. +++|+.|++++|.+++..|..+..+++|+.|++++
T Consensus 428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCC-CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 89896897874335553477878989898983798546776045-78899898988857764865615464689898989
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCC-CCCEEECCC
Q ss_conf 8587787856334334625998520000346521378842111237421998688825335875544157-897896847
Q 002574 762 NNFSGAIPRCIGNLSALVYGNNSEVFQQLIWRVVKGRNPEYSNIIADVNSIDLSWNNLTGQIPDEIGNLS-ALHILNLSH 840 (906)
Q Consensus 762 n~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~n~l~~~~p~~l~~l~-~L~~L~Ls~ 840 (906)
|++++..|..++++++| +.||+++|+++ .+|..+..++ +|+.|++++
T Consensus 507 N~l~~~~~~~~~~l~~L-------------------------------~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSL-------------------------------STLDCSFNRIE-TSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp SCCSCEEGGGTTTCTTC-------------------------------CEEECTTSCCC-CEESCGGGSCTTCCEEECCS
T ss_pred CCCCCCCHHHCCCCCCC-------------------------------CEEECCCCCCC-CCCHHHHHHCCCCCEEECCC
T ss_conf 95787487770688768-------------------------------98889898376-66876752102174887628
Q ss_pred CCCCCCC
Q ss_conf 7362126
Q 002574 841 NQLSGAI 847 (906)
Q Consensus 841 n~l~~~i 847 (906)
|.+....
T Consensus 555 N~~~c~c 561 (606)
T 3vq2_A 555 NSVACIC 561 (606)
T ss_dssp CCCCCSS
T ss_pred CCCCCCC
T ss_conf 9866477
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=401.78 Aligned_cols=331 Identities=24% Similarity=0.245 Sum_probs=198.1
Q ss_pred CCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 8788988598999999997800004888983502577576678-847599998858985589899986773000243011
Q 002574 128 LKYLDTLDLSLNDFEGAEIPEYFGQLKNLRYLNLSFSSFSGEI-PPQLGSLSSLQYLDLYADSFSSNSGSLALHAQNLNW 206 (906)
Q Consensus 128 l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~-p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 206 (906)
.+++++|++++|.+.+. .|..+..+++|++|++++|...+.+ |..++++++|++|++++|.+....+ ..
T Consensus 23 p~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p---------~~ 92 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP---------DA 92 (844)
T ss_dssp CTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT---------TS
T ss_pred CCCCCEEECCCCCCCCC-CHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCH---------HH
T ss_conf 99868888877867832-966776621370886789977444197785378778888798995853197---------67
Q ss_pred HCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCC
Q ss_conf 12999996897798447777754688721899996998248768888996676799863599877985899980655369
Q 002574 207 LSGLSSLKLLNLGFVKLDHVGADWLQAVNMLPSLVELRLHYCQLQGIPLSLPFINFTSISVLDLSENSFNSAIPPWLFSL 286 (906)
Q Consensus 207 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l 286 (906)
+.++++|++|+++.|.+++.... ...+..+++|++|++++|.+.+......+.++++|++|++++|.+.+..+..+..+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLK-DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCST-TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred CCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCC
T ss_conf 15786658701767889734046-76455667999888987864232566557638898989898984776678875355
Q ss_pred --CCCCEEEEECCCCCCCCCHHHCCCCC------CCEEECCCCCCCCCCCCHHHHCC---CCCCEEECCCC---------
Q ss_conf --99979990225553348411028999------99686779878999863543158---99999975588---------
Q 002574 287 --TSLTKLYLRWNFFTGHIPNEFANLKL------LEVLDLSNNLDLGGQLPKLFGIL---RRLKSLDLSAN--------- 346 (906)
Q Consensus 287 --~~L~~L~l~~n~~~~~~~~~l~~l~~------L~~L~L~~n~~~~~~~~~~l~~l---~~L~~L~l~~n--------- 346 (906)
++|+.|+++.|.+.+..+..+..+++ |+.|++++| .+.+..+..+... .+++.+.++.+
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN-GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC-CSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred CCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCC-CCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCC
T ss_conf 6775035789788666554553322377223574007965788-686567788876427441001121212234664445
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 48754221122679999996589885887878644101299888623233763568878347999998899685765884
Q 002574 347 NLNGEVHEFFDGFSGRPNNLEYLDLSSNSLEGELPKSLGNLKNLQYLRLSGNSFWGSIPSSIGNLSSLRKLDLSYNGMNG 426 (906)
Q Consensus 347 ~l~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~ 426 (906)
.+.+.....+.++. +++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 251 ~l~~~~~~~f~~l~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 328 (844)
T 3j0a_A 251 NIKDPDQNTFAGLA--RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328 (844)
T ss_dssp SSTTGGGTTTTTTT--TSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC
T ss_pred CCCCCCHHHHHCCC--CCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC
T ss_conf 66889855652555--4786189897994551586345258999999897981898796883688899989898997885
Q ss_pred CCCCCHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCC
Q ss_conf 36501004466754116788866977767750155465866578987
Q 002574 427 TIPESFGKLSELVDANLLQNSWEGILQESQFMNLKRLESFRLTTEPT 473 (906)
Q Consensus 427 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 473 (906)
..+..+..+++|+.+++++|.+....+. .|..+++|+.|++++|..
T Consensus 329 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQ-TFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp CCSCSCSSCTTCCEEECCSCCCCCCCSS-CSCSCCCCCEEEEETCCS
T ss_pred CCHHHHCCCCCCCEEECCCCCCCCCCHH-HHCCCCCCCEEECCCCCC
T ss_conf 1878846899999898989987762866-613788899988989977
Done!