Citrus Sinensis ID: 002575
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 906 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VY10 | 907 | Probable ubiquitin-conjug | yes | no | 0.961 | 0.960 | 0.54 | 0.0 | |
| Q9ZVX1 | 1102 | Probable ubiquitin-conjug | no | no | 0.939 | 0.772 | 0.389 | 1e-178 | |
| Q9LUQ5 | 609 | Probable ubiquitin-conjug | no | no | 0.268 | 0.399 | 0.548 | 3e-78 | |
| Q8GY87 | 543 | Probable ubiquitin-conjug | no | no | 0.293 | 0.489 | 0.529 | 4e-78 | |
| Q9C0C9 | 1292 | Ubiquitin-conjugating enz | yes | no | 0.230 | 0.161 | 0.440 | 3e-44 | |
| Q6ZPJ3 | 1288 | Ubiquitin-conjugating enz | yes | no | 0.239 | 0.168 | 0.424 | 5e-44 | |
| Q9NR09 | 4857 | Baculoviral IAP repeat-co | no | no | 0.304 | 0.056 | 0.354 | 6e-40 | |
| O88738 | 4882 | Baculoviral IAP repeat-co | no | no | 0.295 | 0.054 | 0.354 | 2e-39 | |
| Q11076 | 728 | Probable ubiquitin-conjug | yes | no | 0.218 | 0.271 | 0.396 | 3e-35 | |
| Q5UQ88 | 1441 | Probable ubiquitin-conjug | N/A | no | 0.227 | 0.142 | 0.345 | 4e-31 |
| >sp|Q8VY10|UBC24_ARATH Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana GN=UBC24 PE=2 SV=1 | Back alignment and function desciption |
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Score = 935 bits (2416), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/900 (54%), Positives = 643/900 (71%), Gaps = 29/900 (3%)
Query: 23 HEENDFLYGGQATSILSSLEESIGKIDDFLSFDRGFTHGDIVRSVTDPSGQMGRVININM 82
HEE +F YGG+A +I S+LEE+IGKID+FLSF+RGF +GDIVRS T+PSGQ GRVINI+M
Sbjct: 21 HEEVEFSYGGRAQNIFSNLEETIGKIDEFLSFERGFMYGDIVRSATEPSGQSGRVINIDM 80
Query: 83 LVDLEGIPGYIIKDVNSKNILKIRSISVGDFVVLGAWLGRVDKVIDSVNIVLDDGSKYEV 142
V+LE G I+K+V++K + K+RSIS+ D+V+ G W+GRVDK+++ V++ LDDG+ YEV
Sbjct: 81 FVNLESTHGKIMKEVDTKRLQKLRSISLSDYVINGPWVGRVDKIVERVSVTLDDGTNYEV 140
Query: 143 TAVDHEKLLPISPSLLEDSQYPYYPGQRVKVRLSTV-KSVSWLCGTGRENQVEGTVCKVD 201
+KL+ I P+LLEDSQY YYPGQRV+V+L+ +S +WLCGT R QV GTVC V+
Sbjct: 141 LVDGQDKLVAIPPNLLEDSQYSYYPGQRVQVKLAHAPRSTTWLCGTWRGTQVMGTVCTVE 200
Query: 202 AGLVYVDWLASALMGSDLNLAAPPRLQDSKNLTLLSGFSHANWQLGDWCMLPTADDKVIT 261
AGLVYVDW+AS +M D NL AP LQ+ ++LTLL SHA+WQLGDWC+LP + I
Sbjct: 201 AGLVYVDWVASIVMEGDRNLTAPQALQNPESLTLLPCVSHASWQLGDWCILPGSSHCDIA 260
Query: 262 EPTFINSSTCD----NKKLERGLRRRNPGSSLAEVFVIVKTKTKFDVVWQDGSCSVGLDS 317
E N + + +K ++G R S L E+FVI KTK K V+WQDGSCS+G+DS
Sbjct: 261 ERQTPNVAAYNLNECHKTFQKGFNRNMQNSGLDELFVITKTKMKVAVMWQDGSCSLGVDS 320
Query: 318 QALLPVNVVNSHEFWPDQFVLEKGISDDPHIPSGQRWGVVQGVDAKERTVTVQWRAKANS 377
Q LLPV VN+H+FWP+QFV+EK + ++WGVV+ V+AKE+TV VQW +
Sbjct: 321 QQLLPVGAVNAHDFWPEQFVVEKETCN------SKKWGVVKAVNAKEQTVKVQWTIQVEK 374
Query: 378 DSDANQSEV-----SAYELVEHPDYSYCYGDVVFKLV-QNQFGMCKDAALEGTISDW-EQ 430
++ EV SAYEL+EHPD+ +C+ DVV KL+ + +F D + +
Sbjct: 375 EATGCVDEVMEEIVSAYELLEHPDFGFCFSDVVVKLLPEGKFDPNADTIVATEAKHLLTE 434
Query: 431 NDCPDTHYSSCIGIVTGFKDGAVEVRWATGFTTKVGPNEIYGVEKYEGSATTPGTNEGNI 490
+D ++ S IG+VTGFK+G+V+V+WA G T+KV P EI+ +E+ E S ++ ++EG++
Sbjct: 435 SDYSGAYFLSSIGVVTGFKNGSVKVKWANGSTSKVAPCEIWKMERSEYSNSSTVSSEGSV 494
Query: 491 EELNRELH--GKQYSSHGGENLPSFDGSGEGCKKYPWESSSFSLACAAIGFFTSIVTSLF 548
++L++++ + S+H L GE C + E SSF L AAIGF T++ +SLF
Sbjct: 495 QDLSQKISQSDEASSNHQETGLVKLYSVGESCNENIPECSSFFLPKAAIGFITNLASSLF 554
Query: 549 GPLGSTSQSDSVSSGHIPEDANETEILLEKEVFEAKNICCEPHPSELQTRGKTNLIQEVE 608
G GSTS S S + ED +++E+L+++ N E + E+ T ++
Sbjct: 555 GYQGSTSVISSHSRCNDSEDQSDSEVLVQETAESYDN--SETNSGEVDM--TTTMVNIPI 610
Query: 609 EDPEKEEFKAFTACENSEDQ--FRQFDMVSDSSDHHFLGASKGLALSQVKRAWVKKVQQE 666
E + T ENS +Q FRQFDMV+D SDHHFL + KGLA SQV ++WVKKVQQE
Sbjct: 611 EGKGINKTLDSTLLENSRNQVRFRQFDMVNDCSDHHFLSSDKGLAQSQVTKSWVKKVQQE 670
Query: 667 WSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHY 726
WS LE +LP TIYVR+ E+R+DL+RAA+VGA GTPYHDGLFFFDI LPP+YPHEPP+VHY
Sbjct: 671 WSNLEANLPNTIYVRVCEERMDLLRAALVGAPGTPYHDGLFFFDIMLPPQYPHEPPMVHY 730
Query: 727 ISGGLRVNPNLYESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNE 786
SGG+R+NPNLYESG+VCLSLLNTW+GSGTEVWN G S+ILQ+LLS QALVLNEKPYFNE
Sbjct: 731 HSGGMRLNPNLYESGRVCLSLLNTWSGSGTEVWNAGSSSILQLLLSFQALVLNEKPYFNE 790
Query: 787 AGYDKQIGRAEGEKNSVSYNENAFLVTCKSMLYLLHKPPKHFKELVEEHFSQRCKYILLA 846
AGYDKQ+GRAEGEKNSVSYNENAFL+TCKSM+ +L KPPKHF+ LV++HF+ R +++L A
Sbjct: 791 AGYDKQLGRAEGEKNSVSYNENAFLITCKSMISMLRKPPKHFEMLVKDHFTHRAQHVLAA 850
Query: 847 CKAYMEGAAVGTASGCKENGENSNGCSVGFKIMLAKLFPKLVEAFSSKGIDCNQFIEPEN 906
CKAYMEG VG+++ + NS S GFKIML+KL+PKL+EAFS G+DC Q I PE+
Sbjct: 851 CKAYMEGVPVGSSANLQ---GNSTTNSTGFKIMLSKLYPKLLEAFSEIGVDCVQEIGPES 907
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Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 9 |
| >sp|Q9ZVX1|UBC23_ARATH Probable ubiquitin-conjugating enzyme E2 23 OS=Arabidopsis thaliana GN=UBC23 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9LUQ5|UBC25_ARATH Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana GN=UBC25 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8GY87|UBC26_ARATH Probable ubiquitin-conjugating enzyme E2 26 OS=Arabidopsis thaliana GN=UBC26 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9C0C9|UBE2O_HUMAN Ubiquitin-conjugating enzyme E2 O OS=Homo sapiens GN=UBE2O PE=1 SV=3 | Back alignment and function description |
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| >sp|Q6ZPJ3|UBE2O_MOUSE Ubiquitin-conjugating enzyme E2 O OS=Mus musculus GN=Ube2o PE=1 SV=3 | Back alignment and function description |
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| >sp|Q9NR09|BIRC6_HUMAN Baculoviral IAP repeat-containing protein 6 OS=Homo sapiens GN=BIRC6 PE=1 SV=2 | Back alignment and function description |
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| >sp|O88738|BIRC6_MOUSE Baculoviral IAP repeat-containing protein 6 OS=Mus musculus GN=Birc6 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q11076|UBC17_CAEEL Probable ubiquitin-conjugating enzyme protein 17 OS=Caenorhabditis elegans GN=ubc-17 PE=3 SV=3 | Back alignment and function description |
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| >sp|Q5UQ88|UBC3_MIMIV Probable ubiquitin-conjugating enzyme E2 R521 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R521 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 906 | ||||||
| 359496174 | 944 | PREDICTED: probable ubiquitin-conjugatin | 0.992 | 0.952 | 0.637 | 0.0 | |
| 224125510 | 924 | predicted protein [Populus trichocarpa] | 0.987 | 0.968 | 0.628 | 0.0 | |
| 356549329 | 919 | PREDICTED: probable ubiquitin-conjugatin | 0.981 | 0.967 | 0.597 | 0.0 | |
| 356519588 | 927 | PREDICTED: probable ubiquitin-conjugatin | 0.991 | 0.968 | 0.592 | 0.0 | |
| 356548723 | 933 | PREDICTED: probable ubiquitin-conjugatin | 0.991 | 0.962 | 0.593 | 0.0 | |
| 356555289 | 924 | PREDICTED: probable ubiquitin-conjugatin | 0.984 | 0.965 | 0.584 | 0.0 | |
| 224077108 | 925 | predicted protein [Populus trichocarpa] | 0.991 | 0.970 | 0.604 | 0.0 | |
| 255556063 | 925 | ubiquitin conjugating enzyme, putative [ | 0.964 | 0.944 | 0.603 | 0.0 | |
| 357446597 | 954 | Ubiquitin-conjugating enzyme family prot | 0.965 | 0.917 | 0.560 | 0.0 | |
| 449433838 | 910 | PREDICTED: probable ubiquitin-conjugatin | 0.974 | 0.970 | 0.561 | 0.0 |
| >gi|359496174|ref|XP_002267490.2| PREDICTED: probable ubiquitin-conjugating enzyme E2 24-like [Vitis vinifera] gi|297735992|emb|CBI23966.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1138 bits (2944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/938 (63%), Positives = 708/938 (75%), Gaps = 39/938 (4%)
Query: 2 MDALFSDSDWESFSESGSSEGHEENDFLYGGQATSILSSLEESIGKIDDFLSFDRGFTHG 61
MD L SDSDWESFSESGSSE E+ D +YGG+A SILSSLEE+IGKIDDFLSF+RGF HG
Sbjct: 1 MDMLLSDSDWESFSESGSSEDQEDIDSMYGGKAQSILSSLEETIGKIDDFLSFERGFIHG 60
Query: 62 DIVRSVTDPSGQMGRVININMLVDLEGIPGYIIKDVNSKNILKIRSISVGDFVVLGAWLG 121
DIV SV DPSGQMGRV++++MLVDLE + G +IKDVNSK +LKIRSIS+GD+VVLG WLG
Sbjct: 61 DIVCSVADPSGQMGRVVDVDMLVDLENVYGKVIKDVNSKKLLKIRSISIGDYVVLGPWLG 120
Query: 122 RVDKVIDSVNIVLDDGSKYEVTAVDHEKLLPISPSLLEDSQYPYYPGQRVKVRLSTV-KS 180
RV KV+DSV I+ DDG+K EVTA DH+K+ PISP LLED QY YYPGQRV+VRLST+ KS
Sbjct: 121 RVSKVVDSVTILFDDGAKCEVTATDHKKIFPISPDLLEDPQYQYYPGQRVQVRLSTLSKS 180
Query: 181 VSWLCGTGRENQVEGTVCKVDAGLVYVDWLASALMGSDLNLAAPPRLQDSKNLTLLSGFS 240
WLCG +EN+ +GTVC V+AGLV VDWLASAL+GS L+L APP QDSK LTLLS FS
Sbjct: 181 ARWLCGAWKENRTDGTVCAVEAGLVSVDWLASALVGSGLSLPAPPCWQDSKKLTLLSCFS 240
Query: 241 HANWQLGDWCMLPTADDKVITEPTFINSSTCDN----KKLERGLRRRNPGSSLAEVFVIV 296
HANWQLGDWCMLP +D K + E ++ STC++ KLERG +R N +FV+V
Sbjct: 241 HANWQLGDWCMLPVSDRKGVMEKNCLSVSTCEHILGHMKLERGFKRMNLSFERENIFVMV 300
Query: 297 KTKTKFDVVWQDGSCSVGLDSQALLPVNVVNSHEFWPDQFVLEKGISDDPHIPSGQRWGV 356
K KTK DV WQDGSCSVGLD Q+L P+N+V++HEFWP+QFVLEKG DDP++ S QRWGV
Sbjct: 301 KIKTKVDVQWQDGSCSVGLDPQSLFPINIVDAHEFWPEQFVLEKGTCDDPNVSSSQRWGV 360
Query: 357 VQGVDAKERTVTVQWRAKA-NSDSDANQ----SEVSAYELVEHPDYSYCYGDVVFKLVQN 411
V+ VDAKER V V+W+ A N +D + VSAYELVEHPDYSYC GD VF+L +N
Sbjct: 361 VEVVDAKERIVKVKWKNFALNEGNDLEEGLMEETVSAYELVEHPDYSYCLGDFVFRLERN 420
Query: 412 QF-----------------GMCKDAALEGTISDWEQNDCPDTHYSSCIGIVTGFKDGAVE 454
Q GM K+ L+G +QN+ D +YSS IG V GFKDG V+
Sbjct: 421 QLVDQADGQNFNNNAIAEMGMGKEIPLKGETCSKDQNEYSDKYYSSHIGNVVGFKDGGVK 480
Query: 455 VRWATGFTTKVGPNEIYGVEKYEGSATTPGTNEGNIEELNREL-HGKQYSSHGGE-NLPS 512
V+WATG TT+V PNEI+ ++K+EGS+TTP E NIEELN EL SS G E ++
Sbjct: 481 VKWATGLTTQVAPNEIFRIDKFEGSSTTP---EENIEELNHELIEDDNQSSPGKEKDVSD 537
Query: 513 FDGSGEGCKKYPWESSSFSLACAAIGFFTSIVTSLFGPLGSTSQSDSVSSGHIPEDANET 572
+ + C KYPW+S+S L A IGFF SI SLFG S S +SS H ED NE+
Sbjct: 538 LNIVDKDCTKYPWQSTSSLLPRAVIGFFLSIAASLFGSPDSALLSGQLSSSHCSEDENES 597
Query: 573 EILLEKEVFEAKNICCEPHP---SELQTRGKTNLIQEVEEDPEKEEFKAFTACENSEDQF 629
L K V + N C E +LQ G+T++ +E++E ++ F++ + +QF
Sbjct: 598 GTHL-KGVLNSCNPCTEEQHIVVDDLQASGETSVKEEIKEIGGDKDL-PFSSGSKNPEQF 655
Query: 630 RQFDMVSDSSDHHFL-GASKGLALSQVKRAWVKKVQQEWSILEKSLPETIYVRIFEDRVD 688
QFDMV D SDHHF+ A KGLALSQVK W+KKVQQEWS+LEK+LPETIYVRI+E+R+D
Sbjct: 656 SQFDMVCDCSDHHFVDSAGKGLALSQVKIGWLKKVQQEWSMLEKNLPETIYVRIYEERMD 715
Query: 689 LIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLL 748
L+RAAIVG TPYHDGLFFFDIFLPPEYPHEPPLVHY SGGLRVNPNLYESGKVCLSLL
Sbjct: 716 LLRAAIVGPSATPYHDGLFFFDIFLPPEYPHEPPLVHYNSGGLRVNPNLYESGKVCLSLL 775
Query: 749 NTWTGSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGRAEGEKNSVSYNEN 808
NTWTG+GTEVWNPG STILQVLLSLQALVLNEKPYFNEAGYDKQ+GRAEGEKNS+SYNEN
Sbjct: 776 NTWTGTGTEVWNPGSSTILQVLLSLQALVLNEKPYFNEAGYDKQMGRAEGEKNSISYNEN 835
Query: 809 AFLVTCKSMLYLLHKPPKHFKELVEEHFSQRCKYILLACKAYMEGAAVGTASGCKENGEN 868
AF+ TC+S+LYLL PPKHF+ +VEEHF+Q ++ LLACKAYMEGA VG A K+ E
Sbjct: 836 AFIGTCRSILYLLRNPPKHFEAIVEEHFNQCSQHFLLACKAYMEGAPVGCAFEHKKTAEE 895
Query: 869 SN-GCSVGFKIMLAKLFPKLVEAFSSKGIDCNQFIEPE 905
S G S GFKIMLAKLFPKLVEAFS++GIDC+QF+E E
Sbjct: 896 SQKGSSTGFKIMLAKLFPKLVEAFSARGIDCSQFVEME 933
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224125510|ref|XP_002329823.1| predicted protein [Populus trichocarpa] gi|222870885|gb|EEF08016.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356549329|ref|XP_003543046.1| PREDICTED: probable ubiquitin-conjugating enzyme E2 24-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356519588|ref|XP_003528454.1| PREDICTED: probable ubiquitin-conjugating enzyme E2 24-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356548723|ref|XP_003542749.1| PREDICTED: probable ubiquitin-conjugating enzyme E2 24-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356555289|ref|XP_003545966.1| PREDICTED: probable ubiquitin-conjugating enzyme E2 24-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224077108|ref|XP_002305135.1| predicted protein [Populus trichocarpa] gi|222848099|gb|EEE85646.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255556063|ref|XP_002519066.1| ubiquitin conjugating enzyme, putative [Ricinus communis] gi|223541729|gb|EEF43277.1| ubiquitin conjugating enzyme, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|357446597|ref|XP_003593574.1| Ubiquitin-conjugating enzyme family protein [Medicago truncatula] gi|355482622|gb|AES63825.1| Ubiquitin-conjugating enzyme family protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449433838|ref|XP_004134704.1| PREDICTED: probable ubiquitin-conjugating enzyme E2 24-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 906 | ||||||
| TAIR|locus:2057589 | 907 | PHO2 "AT2G33770" [Arabidopsis | 0.955 | 0.954 | 0.522 | 2.6e-244 | |
| TAIR|locus:2039380 | 1102 | UBC23 "AT2G16920" [Arabidopsis | 0.516 | 0.424 | 0.419 | 5e-175 | |
| TAIR|locus:2090096 | 609 | UBC25 "ubiquitin-conjugating e | 0.300 | 0.446 | 0.482 | 1.4e-70 | |
| MGI|MGI:2444266 | 1288 | Ube2o "ubiquitin-conjugating e | 0.231 | 0.163 | 0.411 | 1.3e-65 | |
| UNIPROTKB|Q9C0C9 | 1292 | UBE2O "Ubiquitin-conjugating e | 0.222 | 0.156 | 0.427 | 1.9e-65 | |
| UNIPROTKB|F1N3I3 | 1287 | UBE2O "Uncharacterized protein | 0.222 | 0.156 | 0.422 | 2.5e-65 | |
| UNIPROTKB|F1M403 | 1287 | Ube2o "Protein Ube2o" [Rattus | 0.190 | 0.134 | 0.468 | 7.5e-65 | |
| UNIPROTKB|I3L6C1 | 1294 | UBE2O "Uncharacterized protein | 0.222 | 0.156 | 0.422 | 1.3e-64 | |
| RGD|1310297 | 1289 | Ube2o "ubiquitin-conjugating e | 0.190 | 0.134 | 0.463 | 1.4e-63 | |
| UNIPROTKB|F1PG13 | 1138 | UBE2O "Uncharacterized protein | 0.222 | 0.177 | 0.417 | 1.9e-62 |
| TAIR|locus:2057589 PHO2 "AT2G33770" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2354 (833.7 bits), Expect = 2.6e-244, P = 2.6e-244
Identities = 469/897 (52%), Positives = 624/897 (69%)
Query: 27 DFLYGGQATSILSSLEESIGKIDDFLSFDRGFTHGDIVRSVTDPSGQMGRVININMLVDL 86
+F YGG+A +I S+LEE+IGKID+FLSF+RGF +GDIVRS T+PSGQ GRVINI+M V+L
Sbjct: 25 EFSYGGRAQNIFSNLEETIGKIDEFLSFERGFMYGDIVRSATEPSGQSGRVINIDMFVNL 84
Query: 87 EGIPGYIIKDVNSKNILKIRSISVGDFVVLGAWLGRVDKVIDSVNIVLDDGSKYEVTAVD 146
E G I+K+V++K + K+RSIS+ D+V+ G W+GRVDK+++ V++ LDDG+ YEV
Sbjct: 85 ESTHGKIMKEVDTKRLQKLRSISLSDYVINGPWVGRVDKIVERVSVTLDDGTNYEVLVDG 144
Query: 147 HEKLLPISPSLLEDSQYPYYPGQRVKVRLSTV-KSVSWLCGTGRENQVEGTVCKVDAGLV 205
+KL+ I P+LLEDSQY YYPGQRV+V+L+ +S +WLCGT R QV GTVC V+AGLV
Sbjct: 145 QDKLVAIPPNLLEDSQYSYYPGQRVQVKLAHAPRSTTWLCGTWRGTQVMGTVCTVEAGLV 204
Query: 206 YVDWLASALMGSDLNLAAPPRLQDSKNLTLLSGFSHANWQLGDWCMLPTADDKVITE--- 262
YVDW+AS +M D NL AP LQ+ ++LTLL SHA+WQLGDWC+LP + I E
Sbjct: 205 YVDWVASIVMEGDRNLTAPQALQNPESLTLLPCVSHASWQLGDWCILPGSSHCDIAERQT 264
Query: 263 PTFI--NSSTCDNKKLERGLRRRNPGSSLAEVFVIVKTKTKFDVVWQDGSCSVGLDSQAL 320
P N + C +K ++G R S L E+FVI KTK K V+WQDGSCS+G+DSQ L
Sbjct: 265 PNVAAYNLNEC-HKTFQKGFNRNMQNSGLDELFVITKTKMKVAVMWQDGSCSLGVDSQQL 323
Query: 321 LPVNVVNSHEFWPDQFVLEKGISDDPHIPSGQRWGVVQGVDAKERTVTVQWRAKANSDS- 379
LPV VN+H+FWP+QFV+EK + ++WGVV+ V+AKE+TV VQW + ++
Sbjct: 324 LPVGAVNAHDFWPEQFVVEKETCNS------KKWGVVKAVNAKEQTVKVQWTIQVEKEAT 377
Query: 380 ---DANQSE-VSAYELVEHPDYSYCYGDVVFKLV-QNQFGMCKDAALEGTISDW-EQNDC 433
D E VSAYEL+EHPD+ +C+ DVV KL+ + +F D + ++D
Sbjct: 378 GCVDEVMEEIVSAYELLEHPDFGFCFSDVVVKLLPEGKFDPNADTIVATEAKHLLTESDY 437
Query: 434 PDTHYSSCIGIVTGFKDGAVEVRWATGFTTKVGPNEIYGVEKYEGSATTPGTNEGNIEEL 493
++ S IG+VTGFK+G+V+V+WA G T+KV P EI+ +E+ E S ++ ++EG++++L
Sbjct: 438 SGAYFLSSIGVVTGFKNGSVKVKWANGSTSKVAPCEIWKMERSEYSNSSTVSSEGSVQDL 497
Query: 494 NRELH--GKQYSSHGGENLPSFDGSGEGCKKYPWESSSFSLACAAIGFFTSIVTSLFGPL 551
++++ + S+H L GE C + E SSF L AAIGF T++ +SLFG
Sbjct: 498 SQKISQSDEASSNHQETGLVKLYSVGESCNENIPECSSFFLPKAAIGFITNLASSLFGYQ 557
Query: 552 GXXXXXXXXXXGHIPEDANETEILLEKEVFEAKNICCEPHPSELQTRGKTNLIQXXXXXX 611
G + ED +++E+L+++ N E + E+ T ++
Sbjct: 558 GSTSVISSHSRCNDSEDQSDSEVLVQETAESYDN--SETNSGEVDMT--TTMVNIPIEGK 613
Query: 612 XXXXFKAFTACENSEDQ--FRQFDMVSDSSDHHFLGASKGLALSQVKRAWVKKVQQEWSI 669
T ENS +Q FRQFDMV+D SDHHFL + KGLA SQV ++WVKKVQQEWS
Sbjct: 614 GINKTLDSTLLENSRNQVRFRQFDMVNDCSDHHFLSSDKGLAQSQVTKSWVKKVQQEWSN 673
Query: 670 LEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISG 729
LE +LP TIYVR+ E+R+DL+RAA+VGA GTPYHDGLFFFDI LPP+YPHEPP+VHY SG
Sbjct: 674 LEANLPNTIYVRVCEERMDLLRAALVGAPGTPYHDGLFFFDIMLPPQYPHEPPMVHYHSG 733
Query: 730 GLRVNPNLYESGKVCLSLLNTWTGSGTEVWNPGGSTIXXXXXXXXXXXXNEKPYFNEAGY 789
G+R+NPNLYESG+VCLSLLNTW+GSGTEVWN G S+I NEKPYFNEAGY
Sbjct: 734 GMRLNPNLYESGRVCLSLLNTWSGSGTEVWNAGSSSILQLLLSFQALVLNEKPYFNEAGY 793
Query: 790 DKQIGRAEGEKNSVSYNENAFLVTCKSMLYLLHKPPKHFKELVEEHFSQRCKYILLACKA 849
DKQ+GRAEGEKNSVSYNENAFL+TCKSM+ +L KPPKHF+ LV++HF+ R +++L ACKA
Sbjct: 794 DKQLGRAEGEKNSVSYNENAFLITCKSMISMLRKPPKHFEMLVKDHFTHRAQHVLAACKA 853
Query: 850 YMEGAAVGTASGCKENGENSNGCSVGFKIMLAKLFPKLVEAFSSKGIDCNQFIEPEN 906
YMEG VG+++ + N + S GFKIML+KL+PKL+EAFS G+DC Q I PE+
Sbjct: 854 YMEGVPVGSSANLQGNSTTN---STGFKIMLSKLYPKLLEAFSEIGVDCVQEIGPES 907
|
|
| TAIR|locus:2039380 UBC23 "AT2G16920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2090096 UBC25 "ubiquitin-conjugating enzyme 25" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2444266 Ube2o "ubiquitin-conjugating enzyme E2O" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9C0C9 UBE2O "Ubiquitin-conjugating enzyme E2 O" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1N3I3 UBE2O "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1M403 Ube2o "Protein Ube2o" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|I3L6C1 UBE2O "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| RGD|1310297 Ube2o "ubiquitin-conjugating enzyme E2O" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PG13 UBE2O "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8VY10 | UBC24_ARATH | 6, ., 3, ., 2, ., 1, 9 | 0.54 | 0.9613 | 0.9603 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.2.19 | LOW CONFIDENCE prediction! |
| 3rd Layer | 6.3.2 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
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 | eugene3.01240047 | hypothetical protein (924 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 906 | |||
| cd00195 | 141 | cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca | 1e-37 | |
| pfam00179 | 139 | pfam00179, UQ_con, Ubiquitin-conjugating enzyme | 2e-33 | |
| smart00212 | 145 | smart00212, UBCc, Ubiquitin-conjugating enzyme E2, | 6e-30 | |
| COG5078 | 153 | COG5078, COG5078, Ubiquitin-protein ligase [Posttr | 1e-17 | |
| PLN00172 | 147 | PLN00172, PLN00172, ubiquitin conjugating enzyme; | 1e-12 | |
| PTZ00390 | 152 | PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; | 2e-11 |
| >gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 1e-37
Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 13/154 (8%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPH 719
K++Q+E L+K P I E+ + I G TPY G+F DI P +YP
Sbjct: 1 SKRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPF 60
Query: 720 EPPLVHYISGGLRVNPNLYESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQALVLN 779
+PP V +++ +PN+ E+GK+CLS+L T W+P T+ VLLSLQ+L+
Sbjct: 61 KPPKVRFVT--KIYHPNVDENGKICLSILKTHG------WSP-AYTLRTVLLSLQSLLNE 111
Query: 780 EKPYFNEAGYDKQIGRAEGEKNSVSYNENAFLVT 813
P + + ++N + + A T
Sbjct: 112 --PNP-SDPLNAEA-AKLYKENREEFKKKAREWT 141
|
This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141 |
| >gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme | Back alignment and domain information |
|---|
| >gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues | Back alignment and domain information |
|---|
| >gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 906 | |||
| KOG0895 | 1101 | consensus Ubiquitin-conjugating enzyme [Posttransl | 100.0 | |
| KOG0417 | 148 | consensus Ubiquitin-protein ligase [Posttranslatio | 100.0 | |
| KOG0895 | 1101 | consensus Ubiquitin-conjugating enzyme [Posttransl | 100.0 | |
| COG5078 | 153 | Ubiquitin-protein ligase [Posttranslational modifi | 100.0 | |
| PTZ00390 | 152 | ubiquitin-conjugating enzyme; Provisional | 100.0 | |
| KOG0419 | 152 | consensus Ubiquitin-protein ligase [Posttranslatio | 99.98 | |
| PLN00172 | 147 | ubiquitin conjugating enzyme; Provisional | 99.97 | |
| KOG0418 | 200 | consensus Ubiquitin-protein ligase [Posttranslatio | 99.96 | |
| KOG0425 | 171 | consensus Ubiquitin-protein ligase [Posttranslatio | 99.96 | |
| KOG0426 | 165 | consensus Ubiquitin-protein ligase [Posttranslatio | 99.96 | |
| PF00179 | 140 | UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP | 99.96 | |
| KOG0424 | 158 | consensus Ubiquitin-protein ligase [Posttranslatio | 99.95 | |
| cd00195 | 141 | UBCc Ubiquitin-conjugating enzyme E2, catalytic (U | 99.95 | |
| smart00212 | 145 | UBCc Ubiquitin-conjugating enzyme E2, catalytic do | 99.95 | |
| KOG0421 | 175 | consensus Ubiquitin-protein ligase [Posttranslatio | 99.93 | |
| KOG0422 | 153 | consensus Ubiquitin-protein ligase [Posttranslatio | 99.92 | |
| KOG0894 | 244 | consensus Ubiquitin-protein ligase [Posttranslatio | 99.9 | |
| KOG0423 | 223 | consensus Ubiquitin-protein ligase [Posttranslatio | 99.89 | |
| KOG0420 | 184 | consensus Ubiquitin-protein ligase [Posttranslatio | 99.88 | |
| KOG0427 | 161 | consensus Ubiquitin conjugating enzyme [Posttransl | 99.86 | |
| KOG0416 | 189 | consensus Ubiquitin-protein ligase [Posttranslatio | 99.85 | |
| KOG0428 | 314 | consensus Non-canonical ubiquitin conjugating enzy | 99.73 | |
| KOG0429 | 258 | consensus Ubiquitin-conjugating enzyme-related pro | 99.52 | |
| KOG0896 | 138 | consensus Ubiquitin-conjugating enzyme E2 [Posttra | 98.75 | |
| PF14461 | 133 | Prok-E2_B: Prokaryotic E2 family B | 97.55 | |
| PF05743 | 121 | UEV: UEV domain; InterPro: IPR008883 The N-termina | 97.52 | |
| KOG0897 | 122 | consensus Predicted ubiquitin-conjugating enzyme [ | 97.46 | |
| PF08694 | 161 | UFC1: Ubiquitin-fold modifier-conjugating enzyme 1 | 97.45 | |
| KOG2391 | 365 | consensus Vacuolar sorting protein/ubiquitin recep | 96.52 | |
| KOG3357 | 167 | consensus Uncharacterized conserved protein [Funct | 95.8 | |
| PF05773 | 113 | RWD: RWD domain; InterPro: IPR006575 The RWD eukar | 91.74 | |
| PF14462 | 122 | Prok-E2_E: Prokaryotic E2 family E | 89.74 | |
| smart00591 | 107 | RWD domain in RING finger and WD repeat containing | 89.62 | |
| KOG1999 | 1024 | consensus RNA polymerase II transcription elongati | 80.53 |
| >KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-77 Score=706.42 Aligned_cols=819 Identities=29% Similarity=0.332 Sum_probs=599.9
Q ss_pred CCCCcEEEEecCCccccccCCceEEeecccCCCCeeeecCCCCCCcEEEEEEe---EEEEEEecCceeee-c-CCccccc
Q 002575 29 LYGGQATSILSSLEESIGKIDDFLSFDRGFTHGDIVRSVTDPSGQMGRVININ---MLVDLEGIPGYIIK-D-VNSKNIL 103 (906)
Q Consensus 29 l~~g~vr~~w~~g~e~i~~e~~l~LvDR~f~~GDvVr~~~d~~gQ~G~V~~V~---v~vdL~~~~g~vi~-~-V~s~~L~ 103 (906)
...+.+++-|.+-..++..++.++.-+|.+..++.+...++++++.++|..++ ++++|-.-++.+.+ + .....|.
T Consensus 121 ~~~v~~~v~W~~ns~si~~~~~l~sser~~i~~~~~~~~seats~t~vvq~~~~~~it~dl~~k~~a~y~~~~fst~~l~ 200 (1101)
T KOG0895|consen 121 PTGVPVSVRWTDNSNSIETANSLKSSERLWIALLYLGKASEATSSTNVVQGANAGPITVDLPQKSIAIYKKVLFSTQNLP 200 (1101)
T ss_pred cccCceeeeccccccchhhhcccccccccccccccccccccccCccceeecccccccccccccccccccccchhhcccCC
Confidence 34788999999999999999999999999999999999999999999999999 67777665555555 2 5558889
Q ss_pred cCCCcCCCCEEEeC----Ceee-EEEEEEeeEEEEeCCCCeeEEcccCccccccCCC-CCCCCCCCCcCC--CceeEecc
Q 002575 104 KIRSISVGDFVVLG----AWLG-RVDKVIDSVNIVLDDGSKYEVTAVDHEKLLPISP-SLLEDSQYPYYP--GQRVKVRL 175 (906)
Q Consensus 104 ~i~~~~~GDyVv~g----~WlG-~V~~V~~~v~v~~~dGs~cev~~~d~~~L~~~~~-~~~~d~~~~~yp--GQ~V~~~~ 175 (906)
+...+..|++...+ .||+ ++..+.++..+.+.+++.|.+....+.+|.+++. ++.++..+.+|+ |+....-.
T Consensus 201 ~t~d~~sg~~~~P~~~~~~~i~sr~~~v~e~~~~lv~d~~~~k~~~~~plrl~~i~kf~~~ed~~~~~~~~k~~~~k~hs 280 (1101)
T KOG0895|consen 201 PTPDTVSGTIRRPFPPNYPGIHSRSHVVKDEPYELVPDFSMLKVETEEPLRLDLIPKFKLVEDKSFHHYAKKGKSSKPHS 280 (1101)
T ss_pred CCCCccccccCCCCCCcccchhccccccccccccccccccccccccccCccccchhhhccccccccccccccCCCCCccc
Confidence 99999999999988 9999 9999999999999999999999889999887664 455677888898 99999988
Q ss_pred Ccc-cccccccCCCCCcceeeEEEEEEee---EEEEEEEEeeccCCCCCCCCCCCccCCcCCceeccccccccccC-Cee
Q 002575 176 STV-KSVSWLCGTGRENQVEGTVCKVDAG---LVYVDWLASALMGSDLNLAAPPRLQDSKNLTLLSGFSHANWQLG-DWC 250 (906)
Q Consensus 176 ~~~-~~~~Wl~g~~~~~~~~gtV~~V~~~---~v~V~W~a~~~~g~~~~~~~P~~~~d~~~L~~l~~f~~~~~qlg-D~~ 250 (906)
++. ++.+|..+.|.+..++|+++....+ .+.+.|++.........+ -+..+|-|. ++..++.|+.|+.| ++|
T Consensus 281 ~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~gl-f~Fdiq~P~--~yPa~pp~v~~lt~~~~R 357 (1101)
T KOG0895|consen 281 KNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGL-FLFDIQFPD--TYPAVPPHVKYLTGGGVR 357 (1101)
T ss_pred hhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCc-eeeEeecCC--CCCCCCceeEEeecccee
Confidence 888 9999999999999999988877766 999999998732221111 234456665 89999999999999 999
Q ss_pred eccCCCCcccCCcccccCCCCCchhhcccccccCCCCCCCceEEEEeEEEEEEEEeCCCceeeCcCCCceeecccCCCcc
Q 002575 251 MLPTADDKVITEPTFINSSTCDNKKLERGLRRRNPGSSLAEVFVIVKTKTKFDVVWQDGSCSVGLDSQALLPVNVVNSHE 330 (906)
Q Consensus 251 ~l~~~~~k~~~~~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~V~~t~T~vdV~WQDGt~~~~i~st~L~P~~~lddhE 330 (906)
++|.--.. | ...+-+..|+|-. .|++++-.....++.|++|+++..+|
T Consensus 358 ~nPNlYn~--------------------G----------KVcLslLgTwtg~--~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 358 LNPNLYND--------------------G----------KVCLSLLGTWTGS--RREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred ecCCcccC--------------------c----------eEEeeeeeecccc--cccCCCccccchhhhhhhhhhhhccc
Confidence 99873100 0 0111222344444 99999999889999999999999999
Q ss_pred cCCCcEEEecCCC---CCC-------------------------------------------------------------
Q 002575 331 FWPDQFVLEKGIS---DDP------------------------------------------------------------- 346 (906)
Q Consensus 331 f~PGd~V~~k~~~---~~~------------------------------------------------------------- 346 (906)
+||.++-..... +++
T Consensus 406 -~Py~ne~ga~~~~~~a~~~qvs~cv~~~aii~vl~~~~~~Irrpp~~fe~~vqeh~s~~~~~vvievs~y~a~~tl~~~ 484 (1101)
T KOG0895|consen 406 -EPYFNEPGALQKRTSADPYQVSKCVSEEAIIEVLPMMVYEIRRPPEPFESTVQEHYSSREHDVVIEVSAYRAGATLGAK 484 (1101)
T ss_pred -CcccccccccccccCCCccccccccccchhhhhhhhhhhhhcCCccccchHHhhhhcccchhhhhhhhhcccCcChhhc
Confidence 999876433211 110
Q ss_pred ----------------------------------------CCCCCCceEEEEeecCCCCEEE-EEccccCCCC--CCCCe
Q 002575 347 ----------------------------------------HIPSGQRWGVVQGVDAKERTVT-VQWRAKANSD--SDANQ 383 (906)
Q Consensus 347 ----------------------------------------~~~~~~~~GVVqsvd~~eRta~-V~W~~~~~~~--~~~~e 383 (906)
.+...++=|+.+++++.-|+.+ .+|+.....- +...+
T Consensus 485 ~~~~p~~r~ea~gs~~~~~~~dL~~~~Eq~leee~~~~gels~gs~~sg~~ss~na~~rs~~~t~~~t~ldra~eps~~~ 564 (1101)
T KOG0895|consen 485 VDGIPSGREEAAGSIELKFPTDLAGFAEQVLEEEFQCLGELSLGSRDSGETSSLNASIRSSKLTRSLTVLDRAFEPSPVE 564 (1101)
T ss_pred CCCcccccccccccccccchhhhhhHHHHHHHhhcccccccccCcCccccccccccccccCcccccccccccccCCcccc
Confidence 0004456778888888888887 7777654322 22222
Q ss_pred eeeeeeecccCCCCccccCcEEEEeccCCcccccc--------ccccCC-CCC-CcCCCCCCCCCCCcceEEeeecCCcE
Q 002575 384 SEVSAYELVEHPDYSYCYGDVVFKLVQNQFGMCKD--------AALEGT-ISD-WEQNDCPDTHYSSCIGIVTGFKDGAV 453 (906)
Q Consensus 384 E~VSvYel~~hpd~~~~~Gd~Vir~~~~~~~~~~~--------~~~~~~-~~~-~~~~~~~~~~~~s~~G~V~~~~dG~v 453 (906)
+.-.+ ..||++.+++||.|+++.........+ ..+.|- .+. ..+..+...+..+|++...++..|..
T Consensus 565 kkd~~---~~e~~~~~~i~~~l~~lS~~~~al~~s~~tq~~~e~~~kg~p~~~~e~~~~~~~~t~~s~~~~~s~~~~~~~ 641 (1101)
T KOG0895|consen 565 KKDGV---ALEPGRDHLILDCLSDLSKHSPALPRSSVTQFFPELSFKGNPTCTEEQQLEPATGTGFSTGSTASGLDVEQE 641 (1101)
T ss_pred hhhcc---ccCCCcccceeeehhhcccccccccCCcccccHHHHhhcCCCcCChhhcccccccccccccccccceeeccc
Confidence 22222 899999999999999998765311000 111111 011 11222333366889999999999999
Q ss_pred EEEecCCceeeeeccceeeeeeccCCCCCCCCCCCCchhhhhhh-cCC-CCCCCCC-----CCCCCCCCCCCCCCCCCCC
Q 002575 454 EVRWATGFTTKVGPNEIYGVEKYEGSATTPGTNEGNIEELNREL-HGK-QYSSHGG-----ENLPSFDGSGEGCKKYPWE 526 (906)
Q Consensus 454 ~V~w~~g~~s~v~p~~l~~v~~~~~~~~~~~~~e~~~~~~~wet-~d~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 526 (906)
.|.|.+|..|+|.|.-+|..+ .+.++....+.+. .+-.+|++ .++ ..-...+ .+.+.........+...-.
T Consensus 642 ~~~~~~~~~stv~p~~~~~~g-d~~s~~~~~~~~~-~~~~s~~~~~~e~~~~~~~~~~~l~~s~~~~i~~~~~~e~~~~~ 719 (1101)
T KOG0895|consen 642 LVKQRDGTASTVNPVVSYVNG-DAQSEHETGGVES-SALPSWLLLLREQRCLIEAMSSYLRRSSVLDIANHVPNELGELL 719 (1101)
T ss_pred cccccCCccCccCCeeEEecC-CCcchhhhcceeh-hhccccchhhhhhccCchhHHHHHhHHHHHHHhccCCcccchhh
Confidence 999999999999999999887 2222222222211 11245776 222 1110000 0000000011100000011
Q ss_pred CccchhhhhhhccccccccccccCCCCCCCCCCCCCCCCCCCCc--------------hhhhhhHHHHhhhhccCCCCCC
Q 002575 527 SSSFSLACAAIGFFTSIVTSLFGPLGSTSQSDSVSSGHIPEDAN--------------ETEILLEKEVFEAKNICCEPHP 592 (906)
Q Consensus 527 ~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~e~~~ 592 (906)
....+.+.++|.+.+.+.+++| +++.+.+..+.+.-.+ .-++ +.-+..+.++.+.|++..-..
T Consensus 720 ~~~~~~~~~ti~~~~~~~s~~~-~~~~~~v~~~~~y~~i-k~~~~~~~~~~~~~~~~~e~~s~~~~~i~~~~e~~~~~a- 796 (1101)
T KOG0895|consen 720 RGIASLNLETIEFQSELQSSVF-TRLAKMVTCVDTYTNI-KRENVKTGVKPDASKQEPEDLSLLKPDIQKTAEIVYASA- 796 (1101)
T ss_pred cccccCCcchhhHHHHHHHHHH-hhhhhhhhhhhceeee-cceeeecccCCCccccCccccchhhhHHHHHHHHhhhhh-
Confidence 2333346678888888888887 5554443322211111 1100 000111111222221110000
Q ss_pred ccccccccccccccccCCcchhhhhhhccccCCCCCCCceeecCCCCCccccccccCcccccchHHHHHHHHHHHHHHHh
Q 002575 593 SELQTRGKTNLIQEVEEDPEKEEFKAFTACENSEDQFRQFDMVSDSSDHHFLGASKGLALSQVKRAWVKKVQQEWSILEK 672 (906)
Q Consensus 593 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~dhh~~~~~~~~~~~~~~~~~~kRL~kEl~~L~~ 672 (906)
...+....+.....+..+..-.+.+...-.+|+|+++++||||....... ...+.|++..+.||+.|..
T Consensus 797 --------~~~n~~~~d~~~~l~~~s~~~~~~~d~~~~~F~v~~~~~~~h~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 865 (1101)
T KOG0895|consen 797 --------NQANQLKGDVMKKLAFDSFSVVSEDDDGSLRFDVNYDYMDHHKNANDGNK---AAEAQWAKKVQTEWKILPL 865 (1101)
T ss_pred --------hhhhhhhhhhhchhccCCcccccCCCchhccccccCchHHHhhhhccccc---HHHHHHHHHHHHHHHhhhc
Confidence 00000000111111111100001111122799999999999999654433 3344999999999999999
Q ss_pred cCCCceEEEecCCCcceEEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCccEEecCCcccccccCCCCceecccccCCC
Q 002575 673 SLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNPNLYESGKVCLSLLNTWT 752 (906)
Q Consensus 673 ~~p~gI~v~~~ed~l~~w~~~I~GP~~TPYegG~F~fdI~fP~~YP~~PP~V~f~t~~~i~HPNVy~~GkVCLslL~tw~ 752 (906)
++|.||+||.+|+||++++++|+||.||||++|+|+|+|+||.+||..||.|+|++++.|+|||+|++|+||||||+||+
T Consensus 866 ~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~ 945 (1101)
T KOG0895|consen 866 SLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWH 945 (1101)
T ss_pred cCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCcchhhHHHHHHHHhcCCCCCCCccccccccchhhhhhcHHHHHHHHHHHHHHHHHHHHcCCCccHHHHH
Q 002575 753 GSGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGRAEGEKNSVSYNENAFLVTCKSMLYLLHKPPKHFKELV 832 (906)
Q Consensus 753 g~~~e~WsP~~~tl~qVL~sIq~Ll~~p~P~~nEag~e~~~~~~~~~~n~~~Yne~a~~~t~k~m~~~l~~pp~~Fe~~v 832 (906)
|+++|.|+|+ ++|+|||+|||+|+++.+||||||||+.++|+.++++|++.||+++++.+|++|+++|++||+.|+++|
T Consensus 946 g~~~e~w~~~-s~~lq~l~s~q~l~l~~~py~ne~gy~~~~g~~~g~~~s~~y~~~~~~~~~~~~~~~~~~p~~~~~e~i 1024 (1101)
T KOG0895|consen 946 GRGNEVWNPS-SSILQVLVSIQGLVLNEEPYFNEAGYEKQRGTAEGEKNSRVYNENAFLLTCKSMVYQLRKPPKCFEEVI 1024 (1101)
T ss_pred CCCccccCcc-hhHHHHHHHhhhhhcccccccCcccccccccccccccccccccchhHHHHHHHHHHHhhCCcHHHHHHH
Confidence 9999999997 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHhccCccCCCCCCCCC--CCCCCCCChhHHHHHHHHHHHHHHHHHhCCCCcccccC
Q 002575 833 EEHFSQRCKYILLACKAYMEGAAVGTASGCKEN--GENSNGCSVGFKIMLAKLFPKLVEAFSSKGIDCNQFIE 903 (906)
Q Consensus 833 ~~hf~~~~~~il~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~f~~~l~~~~~~l~~~~~~~g~~~~~~~~ 903 (906)
++||+.++..|+++|++|+++.+.|+..+.... ....+..+.+|+.+|.++...+.-++.+.|++|..+++
T Consensus 1025 ~~Hf~~~~~ei~~~c~a~~~~~~~~s~~k~~v~d~~~a~ks~s~~~k~~l~~~~~~~~~~~~~~~a~~~~~~~ 1097 (1101)
T KOG0895|consen 1025 HKHFYLRGVEIMAACEAWIAGILQGSSDKRVVSDHAAALKSHSAQFKEELLKLPCPEGLAPDTVGAPEVCEAT 1097 (1101)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchhcccccchhhhhHHHHhccchhhhhhhhhCCcccccchhhcCchhhhhcc
Confidence 999999999999999999999999998887754 34456789999999999999999999999998876654
|
|
| >KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PTZ00390 ubiquitin-conjugating enzyme; Provisional | Back alignment and domain information |
|---|
| >KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PLN00172 ubiquitin conjugating enzyme; Provisional | Back alignment and domain information |
|---|
| >KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ] | Back alignment and domain information |
|---|
| >KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain | Back alignment and domain information |
|---|
| >smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues | Back alignment and domain information |
|---|
| >KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF14461 Prok-E2_B: Prokaryotic E2 family B | Back alignment and domain information |
|---|
| >PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub) | Back alignment and domain information |
|---|
| >KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes | Back alignment and domain information |
|---|
| >KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG3357 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO) | Back alignment and domain information |
|---|
| >PF14462 Prok-E2_E: Prokaryotic E2 family E | Back alignment and domain information |
|---|
| >smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain | Back alignment and domain information |
|---|
| >KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 906 | ||||
| 3ceg_A | 323 | Crystal Structure Of The Ubc Domain Of Baculoviral | 4e-32 | ||
| 1yh2_A | 169 | Ubiquitin-Conjugating Enzyme Hspc150 Length = 169 | 5e-09 | ||
| 1ayz_A | 169 | Crystal Structure Of The Saccharomyces Cerevisiae U | 2e-08 | ||
| 1q34_A | 163 | Crystal Structures Of Two Ubc (E2) Enzymes Of The U | 1e-07 | ||
| 1z3d_A | 157 | Protein Crystal Growth Improvement Leading To The 2 | 2e-07 | ||
| 1jas_A | 152 | Hsubc2b Length = 152 | 2e-07 | ||
| 1qcq_A | 148 | Ubiquitin Conjugating Enzyme Length = 148 | 2e-07 | ||
| 3l1z_A | 157 | Crystal Structure Of The U-Box Domain Of Human E4b | 3e-07 | ||
| 2fuh_A | 146 | Solution Structure Of The Ubch5cUB NON-Covalent Com | 3e-07 | ||
| 2oxq_A | 152 | Structure Of The Ubch5 :chip U-Box Complex Length = | 3e-07 | ||
| 3rpg_A | 149 | Bmi1RING1B-Ubch5c Complex Structure Length = 149 | 3e-07 | ||
| 2esq_A | 149 | Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta | 5e-07 | ||
| 3l1y_A | 157 | Crystal Structure Of Human Ubc4 E2 Conjugating Enzy | 6e-07 | ||
| 1ur6_A | 147 | Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp | 6e-07 | ||
| 2c4o_B | 165 | Crystal Structure Of Human Ubiquitin-Conjugating En | 6e-07 | ||
| 2esk_A | 149 | Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil | 6e-07 | ||
| 2ayv_A | 166 | Crystal Structure Of A Putative Ubiquitin-Conjugati | 6e-07 | ||
| 1x23_A | 155 | Crystal Structure Of Ubch5c Length = 155 | 1e-06 | ||
| 4ii2_C | 163 | Crystal Structure Of Ubiquitin Activating Enzyme 1 | 1e-06 | ||
| 2esp_A | 149 | Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta | 1e-06 | ||
| 3e95_A | 151 | Crystal Structure Of The Plasmodium Falciparum Ubiq | 2e-06 | ||
| 3tgd_A | 152 | Crystal Structure Of The Human Ubiquitin-Conjugatin | 2e-06 | ||
| 1z2u_A | 150 | The 1.1a Crystallographic Structure Of Ubiquitin- C | 2e-06 | ||
| 2r0j_A | 149 | Crystal Structure Of The Putative Ubiquitin Conjuga | 2e-06 | ||
| 1jbb_A | 153 | Ubiquitin Conjugating Enzyme, Ubc13 Length = 153 | 2e-06 | ||
| 2aak_A | 152 | Ubiquitin Conjugating Enzyme From Arabidopsis Thali | 2e-06 | ||
| 2f4z_A | 193 | Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw | 2e-06 | ||
| 3eb6_B | 149 | Structure Of The Ciap2 Ring Domain Bound To Ubch5b | 2e-06 | ||
| 1jat_A | 155 | Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng | 2e-06 | ||
| 3ong_B | 159 | Crystal Structure Of Uba2ufd-ubc9: Insights Into E1 | 3e-06 | ||
| 2eso_A | 149 | Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta | 3e-06 | ||
| 2gjd_A | 157 | Distinct Functional Domains Of Ubc9 Dictate Cell Su | 3e-06 | ||
| 2kjh_A | 152 | Nmr Based Structural Model Of The Ubch8-Ubiquitin C | 4e-06 | ||
| 2yho_B | 149 | The Idol-Ube2d Complex Mediates Sterol-Dependent De | 4e-06 | ||
| 1wzv_A | 155 | Crystal Structure Of Ubch8 Length = 155 | 4e-06 | ||
| 3oj4_A | 153 | Crystal Structure Of The A20 Znf4, Ubiquitin And Ub | 4e-06 | ||
| 2c4p_A | 165 | Crystal Structure Of Human Ubiquitin-Conjugating En | 4e-06 | ||
| 3ugb_A | 147 | Ubch5c~ubiquitin Conjugate Length = 147 | 5e-06 | ||
| 4gpr_A | 151 | Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin | 5e-06 | ||
| 3bzh_A | 194 | Crystal Structure Of Human Ubiquitin-Conjugating En | 7e-06 | ||
| 2c4o_A | 165 | Crystal Structure Of Human Ubiquitin-Conjugating En | 1e-05 | ||
| 3a4s_A | 163 | The Crystal Structure Of The Sld2:ubc9 Complex Leng | 1e-05 | ||
| 1zdn_A | 158 | Ubiquitin-Conjugating Enzyme E2s Length = 158 | 1e-05 | ||
| 3k9p_A | 217 | The Crystal Structure Of E2-25k And Ubiquitin Compl | 2e-05 | ||
| 3e46_A | 253 | Crystal Structure Of Ubiquitin-Conjugating Enzyme E | 2e-05 | ||
| 1yla_A | 202 | Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington | 2e-05 | ||
| 2ucz_A | 165 | Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy | 2e-05 | ||
| 1y6l_A | 149 | Human Ubiquitin Conjugating Enzyme E2e2 Length = 14 | 2e-05 | ||
| 2gmi_A | 152 | Mms2UBC13~UBIQUITIN Length = 152 | 3e-05 | ||
| 3a33_A | 150 | Ubch5b~ubiquitin Conjugate Length = 150 | 3e-05 | ||
| 2o25_C | 160 | Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi | 4e-05 | ||
| 4ddg_A | 399 | Crystal Structure Of Human Otub1UBCH5B~UBUB Length | 4e-05 | ||
| 1kps_A | 159 | Structural Basis For E2-Mediated Sumo Conjugation R | 5e-05 | ||
| 1z5s_A | 158 | Crystal Structure Of A Complex Between Ubc9, Sumo-1 | 5e-05 | ||
| 1u9a_A | 160 | Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16 | 6e-05 | ||
| 2grr_A | 161 | Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt | 6e-05 | ||
| 2grn_A | 161 | Crystal Structure Of Human Rangap1-Ubc9 Length = 16 | 6e-05 | ||
| 2grq_A | 161 | Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt | 6e-05 | ||
| 2bep_A | 159 | Crystal Structure Of Ubiquitin Conjugating Enzyme E | 6e-05 | ||
| 4auq_A | 147 | Structure Of Birc7-Ubch5b-Ub Complex. Length = 147 | 6e-05 | ||
| 4ap4_B | 153 | Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le | 7e-05 | ||
| 3k9o_A | 201 | The Crystal Structure Of E2-25k And Ubb+1 Complex L | 8e-05 | ||
| 3jvz_A | 146 | E2~ubiquitin-Hect Length = 146 | 9e-05 | ||
| 1tte_A | 215 | The Structure Of A Class Ii Ubiquitin-Conjugating E | 1e-04 | ||
| 3hct_B | 155 | Crystal Structure Of Traf6 In Complex With Ubc13 In | 2e-04 | ||
| 4epo_B | 155 | Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE | 2e-04 | ||
| 1j7d_B | 152 | Crystal Structure Of Hmms2-Hubc13 Length = 152 | 2e-04 | ||
| 3rcz_B | 163 | Rad60 Sld2 Ubc9 Complex Length = 163 | 2e-04 | ||
| 3von_C | 148 | Crystalstructure Of The Ubiquitin Protease Length = | 2e-04 | ||
| 2c2v_B | 154 | Crystal Structure Of The Chip-Ubc13-Uev1a Complex L | 2e-04 | ||
| 2ob4_A | 180 | Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1 | 2e-04 | ||
| 1fxt_A | 149 | Structure Of A Conjugating Enzyme-Ubiquitin Thioles | 2e-04 | ||
| 3rz3_A | 183 | Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len | 2e-04 | ||
| 4fh1_A | 153 | S. Cerevisiae Ubc13-N79a Length = 153 | 2e-04 | ||
| 2pwq_A | 216 | Crystal Structure Of A Putative Ubiquitin Conjugati | 2e-04 | ||
| 2gro_A | 161 | Crystal Structure Of Human Rangap1-Ubc9-N85q Length | 3e-04 | ||
| 2grp_A | 161 | Crystal Structure Of Human Rangap1-Ubc9-Y87a Length | 5e-04 | ||
| 2e2c_A | 156 | E2-C, An Ubiquitin Conjugating Enzyme Required For | 6e-04 | ||
| 1yf9_A | 171 | Structural Analysis Of Leishmania Major Ubiquitin C | 6e-04 | ||
| 2uyz_A | 158 | Non-Covalent Complex Between Ubc9 And Sumo1 Length | 8e-04 | ||
| 1c4z_D | 154 | Structure Of E6ap: Insights Into Ubiquitination Pat | 8e-04 | ||
| 3sqv_C | 156 | Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L | 8e-04 |
| >pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap Repeat- Containing Protein 6 Length = 323 | Back alignment and structure |
|
| >pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169 | Back alignment and structure |
| >pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169 | Back alignment and structure |
| >pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163 | Back alignment and structure |
| >pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157 | Back alignment and structure |
| >pdb|1JAS|A Chain A, Hsubc2b Length = 152 | Back alignment and structure |
| >pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148 | Back alignment and structure |
| >pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157 | Back alignment and structure |
| >pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146 | Back alignment and structure |
| >pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152 | Back alignment and structure |
| >pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149 | Back alignment and structure |
| >pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149 | Back alignment and structure |
| >pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157 | Back alignment and structure |
| >pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147 | Back alignment and structure |
| >pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165 | Back alignment and structure |
| >pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149 | Back alignment and structure |
| >pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166 | Back alignment and structure |
| >pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155 | Back alignment and structure |
| >pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163 | Back alignment and structure |
| >pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149 | Back alignment and structure |
| >pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151 | Back alignment and structure |
| >pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152 | Back alignment and structure |
| >pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150 | Back alignment and structure |
| >pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149 | Back alignment and structure |
| >pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153 | Back alignment and structure |
| >pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152 | Back alignment and structure |
| >pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193 | Back alignment and structure |
| >pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149 | Back alignment and structure |
| >pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155 | Back alignment and structure |
| >pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159 | Back alignment and structure |
| >pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149 | Back alignment and structure |
| >pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157 | Back alignment and structure |
| >pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152 | Back alignment and structure |
| >pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149 | Back alignment and structure |
| >pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155 | Back alignment and structure |
| >pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153 | Back alignment and structure |
| >pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165 | Back alignment and structure |
| >pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147 | Back alignment and structure |
| >pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151 | Back alignment and structure |
| >pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194 | Back alignment and structure |
| >pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165 | Back alignment and structure |
| >pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163 | Back alignment and structure |
| >pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158 | Back alignment and structure |
| >pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217 | Back alignment and structure |
| >pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253 | Back alignment and structure |
| >pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202 | Back alignment and structure |
| >pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165 | Back alignment and structure |
| >pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149 | Back alignment and structure |
| >pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152 | Back alignment and structure |
| >pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150 | Back alignment and structure |
| >pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160 | Back alignment and structure |
| >pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399 | Back alignment and structure |
| >pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159 | Back alignment and structure |
| >pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158 | Back alignment and structure |
| >pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160 | Back alignment and structure |
| >pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161 | Back alignment and structure |
| >pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161 | Back alignment and structure |
| >pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161 | Back alignment and structure |
| >pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159 | Back alignment and structure |
| >pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147 | Back alignment and structure |
| >pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153 | Back alignment and structure |
| >pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201 | Back alignment and structure |
| >pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146 | Back alignment and structure |
| >pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215 | Back alignment and structure |
| >pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155 | Back alignment and structure |
| >pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155 | Back alignment and structure |
| >pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152 | Back alignment and structure |
| >pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163 | Back alignment and structure |
| >pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148 | Back alignment and structure |
| >pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154 | Back alignment and structure |
| >pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180 | Back alignment and structure |
| >pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149 | Back alignment and structure |
| >pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183 | Back alignment and structure |
| >pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153 | Back alignment and structure |
| >pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216 | Back alignment and structure |
| >pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161 | Back alignment and structure |
| >pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161 | Back alignment and structure |
| >pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156 | Back alignment and structure |
| >pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin Conjugating Enzyme E2 Length = 171 | Back alignment and structure |
| >pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158 | Back alignment and structure |
| >pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154 | Back alignment and structure |
| >pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323 | Back alignment and structure |
|---|
Score = 313 bits (803), Expect = e-99
Identities = 102/324 (31%), Positives = 163/324 (50%), Gaps = 21/324 (6%)
Query: 592 PSELQTRGKTNLIQEVEEDPEKEEFKAFTACENSEDQFRQFDMVSDSSD--------HHF 643
+ K + + + E K + QF F+MVS+ D +H+
Sbjct: 5 KKLGEYSKKAAMKPKPLSVLKSLEEKYVAVMKKL--QFDTFEMVSEDEDGKLGFKVNYHY 62
Query: 644 LGASKGLALSQVKRAWVKKVQQEWSILEKSLPET----IYVRIFEDRVDLIRAAIVGAKG 699
+ K A +++ QE L SLP + ++VR E+R+D+++ I G
Sbjct: 63 MSQVKNAN-DANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPAD 121
Query: 700 TPYHDGLFFFDIFLPPEYPHEPPLVHYIS---GGLRVNPNLYESGKVCLSLLNTWTGSGT 756
TPY +G F FD++ P +YP PPLV+ + +R NPNLY GKVCLS+LNTW G
Sbjct: 122 TPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPE 181
Query: 757 EVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGRAEGEKNSVSYNENAFLVTCK- 815
E WNP S+ LQVL+S+Q+L+L +PYFNE GY++ G G ++S Y+ N T K
Sbjct: 182 EKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKW 241
Query: 816 SMLYLLHKPPKHFKELVEEHFSQRCKYILLACKAYMEGAAVGTASGCKENGENSNGCSVG 875
+ML + P FKE++ +HF + I+ C+ ++ ++ K G + +
Sbjct: 242 AMLEQIRNPSPCFKEVIHKHFYLKRVEIMAQCEEWIADIQQYSSD--KRVGRTMSHHAAA 299
Query: 876 FKIMLAKLFPKLVEAFSSKGIDCN 899
K A+L +L++ +G+D +
Sbjct: 300 LKRHTAQLREELLKLPCPEGLDPD 323
|
| >3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167 | Back alignment and structure |
|---|
| >2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136 | Back alignment and structure |
|---|
| >1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169 | Back alignment and structure |
|---|
| >2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136 | Back alignment and structure |
|---|
| >2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125 | Back alignment and structure |
|---|
| >1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158 | Back alignment and structure |
|---|
| >1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155 | Back alignment and structure |
|---|
| >2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161 | Back alignment and structure |
|---|
| >1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155 | Back alignment and structure |
|---|
| >2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149 | Back alignment and structure |
|---|
| >2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154 | Back alignment and structure |
|---|
| >2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166 | Back alignment and structure |
|---|
| >1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150 | Back alignment and structure |
|---|
| >2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156 | Back alignment and structure |
|---|
| >2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157 | Back alignment and structure |
|---|
| >3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190 | Back alignment and structure |
|---|
| >1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169 | Back alignment and structure |
|---|
| >2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165 | Back alignment and structure |
|---|
| >1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179 | Back alignment and structure |
|---|
| >3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194 | Back alignment and structure |
|---|
| >2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152 | Back alignment and structure |
|---|
| >2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187 | Back alignment and structure |
|---|
| >1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169 | Back alignment and structure |
|---|
| >3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163 | Back alignment and structure |
|---|
| >2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156 | Back alignment and structure |
|---|
| >2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216 | Back alignment and structure |
|---|
| >1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154 | Back alignment and structure |
|---|
| >3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164 | Back alignment and structure |
|---|
| >2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165 | Back alignment and structure |
|---|
| >2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172 | Back alignment and structure |
|---|
| >2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160 | Back alignment and structure |
|---|
| >3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201 | Back alignment and structure |
|---|
| >1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138 | Back alignment and structure |
|---|
| >2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159 | Back alignment and structure |
|---|
| >3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183 | Back alignment and structure |
|---|
| >2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180 | Back alignment and structure |
|---|
| >1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149 | Back alignment and structure |
|---|
| >2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193 | Back alignment and structure |
|---|
| >3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253 | Back alignment and structure |
|---|
| >2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170 | Back alignment and structure |
|---|
| >1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160 | Back alignment and structure |
|---|
| >1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215 | Back alignment and structure |
|---|
| >4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399 | Back alignment and structure |
|---|
| >2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152 | Back alignment and structure |
|---|
| >2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172 | Back alignment and structure |
|---|
| >2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179 | Back alignment and structure |
|---|
| >4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167 | Back alignment and structure |
|---|
| >1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171 | Back alignment and structure |
|---|
| >3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A Length = 146 | Back alignment and structure |
|---|
| >1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186 | Back alignment and structure |
|---|
| >3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} PDB: 3r42_A 1uzx_A* Length = 162 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 906 | ||||
| d1s1qa_ | 141 | d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10 | 3e-26 | |
| d1z2ua1 | 147 | d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U | 2e-25 | |
| d2f4wa1 | 157 | d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, | 3e-24 | |
| d2ucza_ | 164 | d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B | 3e-22 | |
| d2a7la1 | 117 | d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 | 9e-22 | |
| d1yh2a1 | 154 | d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U | 3e-20 | |
| d2a4da1 | 139 | d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, | 4e-20 | |
| d2awfa1 | 125 | d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U | 5e-20 | |
| d1j7db_ | 149 | d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H | 5e-20 | |
| d1jata_ | 152 | d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B | 1e-19 | |
| d1y6la_ | 148 | d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H | 1e-19 | |
| d2fo3a1 | 109 | d.20.1.1 (A:9-117) Putative ubiquitin-conjugating | 1e-19 | |
| d1uzxa_ | 152 | d.20.1.2 (A:) Vacuolar protein sorting-associated | 5e-19 | |
| d1ayza_ | 153 | d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B | 9e-19 | |
| d1z3da1 | 149 | d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U | 1e-18 | |
| d1wzva1 | 150 | d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U | 1e-17 | |
| d1pzva_ | 161 | d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N | 4e-17 | |
| d1zdna1 | 151 | d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U | 1e-16 | |
| d2e2ca_ | 156 | d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C | 2e-16 | |
| d1jatb_ | 136 | d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B | 7e-15 | |
| d1i7ka_ | 146 | d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H | 2e-14 | |
| d1yrva1 | 148 | d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U | 3e-14 | |
| d1c4zd_ | 144 | d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H | 4e-14 | |
| d2uyza1 | 156 | d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U | 5e-14 | |
| d2f4za1 | 161 | d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca | 6e-14 | |
| d1fzya_ | 149 | d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B | 8e-14 | |
| d1y8xa1 | 157 | d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, | 7e-12 | |
| d2bepa1 | 154 | d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2 | 2e-11 | |
| d1yf9a1 | 158 | d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, | 1e-09 | |
| d2z5da1 | 152 | d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, | 9e-09 | |
| d1zuoa1 | 162 | d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme | 3e-07 |
| >d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: UBC-like superfamily: UBC-like family: UEV domain domain: Tumor susceptibility gene 101 (TSG101) species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (256), Expect = 3e-26
Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 13/130 (10%)
Query: 660 VKKVQQEWSILEKSLPETIYVRIFEDRVDLIRAAIVGAKGTPYHDGLFFF--DIFLPPEY 717
+ L K L + +F D + G PY + ++L Y
Sbjct: 19 TVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTY 78
Query: 718 PHEPPLVHYI---SGGLRVNPNLYESGKVCLSLLNTWTGSGTEVWNPGGSTILQVLLSLQ 774
P+ PP+ S ++ ++ +GK+ L L+ W S +L ++ +
Sbjct: 79 PYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHE--------WKHPQSDLLGLIQVMI 130
Query: 775 ALVLNEKPYF 784
+ +E P F
Sbjct: 131 VVFGDEPPVF 140
|
| >d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147 | Back information, alignment and structure |
|---|
| >d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157 | Back information, alignment and structure |
|---|
| >d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164 | Back information, alignment and structure |
|---|
| >d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
| >d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154 | Back information, alignment and structure |
|---|
| >d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139 | Back information, alignment and structure |
|---|
| >d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
| >d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149 | Back information, alignment and structure |
|---|
| >d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152 | Back information, alignment and structure |
|---|
| >d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148 | Back information, alignment and structure |
|---|
| >d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109 | Back information, alignment and structure |
|---|
| >d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152 | Back information, alignment and structure |
|---|
| >d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153 | Back information, alignment and structure |
|---|
| >d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149 | Back information, alignment and structure |
|---|
| >d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150 | Back information, alignment and structure |
|---|
| >d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161 | Back information, alignment and structure |
|---|
| >d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151 | Back information, alignment and structure |
|---|
| >d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156 | Back information, alignment and structure |
|---|
| >d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136 | Back information, alignment and structure |
|---|
| >d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146 | Back information, alignment and structure |
|---|
| >d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148 | Back information, alignment and structure |
|---|
| >d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144 | Back information, alignment and structure |
|---|
| >d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
| >d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161 | Back information, alignment and structure |
|---|
| >d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149 | Back information, alignment and structure |
|---|
| >d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157 | Back information, alignment and structure |
|---|
| >d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154 | Back information, alignment and structure |
|---|
| >d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158 | Back information, alignment and structure |
|---|
| >d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 906 | |||
| d2ucza_ | 164 | Ubiquitin conjugating enzyme, UBC {Baker's yeast ( | 100.0 | |
| d1yh2a1 | 154 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 100.0 | |
| d1y6la_ | 148 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 100.0 | |
| d1z2ua1 | 147 | Ubiquitin conjugating enzyme, UBC {Caenorhabditis | 100.0 | |
| d1ayza_ | 153 | Ubiquitin conjugating enzyme, UBC {Baker's yeast ( | 100.0 | |
| d1j7db_ | 149 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 100.0 | |
| d1z3da1 | 149 | Ubiquitin conjugating enzyme, UBC {Nematode (Caeno | 100.0 | |
| d1zdna1 | 151 | Ubiquitin conjugating enzyme, UBC {Human(Homo sapi | 99.98 | |
| d1jata_ | 152 | Ubiquitin conjugating enzyme, UBC {Baker's yeast ( | 99.98 | |
| d2e2ca_ | 156 | Ubiquitin conjugating enzyme, UBC {Clam (Spisula s | 99.98 | |
| d2uyza1 | 156 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 99.98 | |
| d1pzva_ | 161 | Ubiquitin conjugating enzyme, UBC {Nematode (Caeno | 99.97 | |
| d1i7ka_ | 146 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 99.97 | |
| d2bepa1 | 154 | Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain | 99.97 | |
| d1wzva1 | 150 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 99.97 | |
| d1fzya_ | 149 | Ubiquitin conjugating enzyme, UBC {Baker's yeast ( | 99.97 | |
| d2f4za1 | 161 | Hypothetical protein Tgtwinscan_2721, E2 domain {T | 99.97 | |
| d1yrva1 | 148 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 99.97 | |
| d1c4zd_ | 144 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 99.96 | |
| d2f4wa1 | 157 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 99.96 | |
| d2a7la1 | 117 | Ubiquitin-protein ligase W (E2 W) {Human (Homo sap | 99.96 | |
| d2awfa1 | 125 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 99.96 | |
| d2fo3a1 | 109 | Putative ubiquitin-conjugating enzyme, E2 domain { | 99.95 | |
| d1yf9a1 | 158 | Ubiquitin conjugating enzyme, UBC {Leishmania majo | 99.95 | |
| d1y8xa1 | 157 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 99.95 | |
| d2z5da1 | 152 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 99.95 | |
| d1zuoa1 | 162 | Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom | 99.94 | |
| d2a4da1 | 139 | Ubiquitin conjugating enzyme, UBC {Human (Homo sap | 99.93 | |
| d1jatb_ | 136 | Ubiquitin conjugating enzyme, UBC {Baker's yeast ( | 99.93 | |
| d1s1qa_ | 141 | Tumor susceptibility gene 101 (TSG101) {Human (Hom | 99.67 | |
| d1uzxa_ | 152 | Vacuolar protein sorting-associated {Baker's yeast | 99.58 | |
| d2in1a1 | 162 | Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie | 97.45 | |
| d2daya1 | 115 | E3 ubiquitin-protein ligase RNF25 {Human (Homo sap | 82.84 |
| >d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: UBC-like superfamily: UBC-like family: UBC-related domain: Ubiquitin conjugating enzyme, UBC species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]
Probab=100.00 E-value=9.4e-33 Score=239.81 Aligned_cols=154 Identities=25% Similarity=0.424 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 89999999999999954999518991-27996339999985999988998899999789999999992179118942266
Q 002575 657 RAWVKKVQQEWSILEKSLPETIYVRI-FEDRVDLIRAAIVGAKGTPYHDGLFFFDIFLPPEYPHEPPLVHYISGGLRVNP 735 (906)
Q Consensus 657 ~~~~kRL~kEl~~L~~~lp~gI~v~~-~ed~l~~w~~~I~GP~gTPYegG~F~fdI~fP~~YP~~PP~v~F~t~~~ifhP 735 (906)
+.++|||++|++.|++++++||++.+ .++|++.|.++|.||+||||+||.|+|+|.||++||++||+|+|.|+ +|||
T Consensus 2 ~~a~kRL~~E~~~l~~~~~~gi~~~p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HP 79 (164)
T d2ucza_ 2 KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPS--ILHP 79 (164)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC--CSCT
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECC--CEEC
T ss_conf 78999999999999658999879997886253231004527974232699667877548777888975896348--4445
Q ss_pred CCCCCCCEECCCCCCCCC------CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHHH
Q ss_conf 657998410144447799------99986578875346579999998227899998446320002144313199999999
Q 002575 736 NLYESGKVCLSLLNTWTG------SGTEVWNPGGSTILQVLLSLQALVLNEKPYFNEAGYDKQIGRAEGEKNSVSYNENA 809 (906)
Q Consensus 736 NIy~~GkVCLslL~tw~G------~~~e~WsP~~stL~qVLiSIq~Ll~~p~Py~nEag~e~~~g~~~~~~ns~~Yne~a 809 (906)
||+.+|+||+++|+++.+ ...+.|+|+ ++|.+||++|++||..|++. .| -...+...++++...|+++|
T Consensus 80 nv~~~G~vCl~il~~~~~~~~~~~~~~~~w~p~-~ti~~il~~i~~ll~~p~~~--~p--~n~eaa~l~~~~~~~f~~~~ 154 (164)
T d2ucza_ 80 NIYPNGEVCISILHSPGDDPNMYELAEERWSPV-QSVEKILLSVMSMLSEPNIE--SG--ANIDACILWRDNRPEFERQV 154 (164)
T ss_dssp TBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTT-CCHHHHHHHHHHHHHSCCGG--GC--CCHHHHHHHHTTHHHHHHHH
T ss_pred EECCCCCEEECCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCC--CC--CCHHHHHHHHHCHHHHHHHH
T ss_conf 071799763310157665643321254448833-04999999999998389988--72--03999999998999999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q 002575 810 FLVTCKSM 817 (906)
Q Consensus 810 ~~~~~k~m 817 (906)
+..+.++|
T Consensus 155 r~~~~k~~ 162 (164)
T d2ucza_ 155 KLSILKSL 162 (164)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
T ss_conf 99999876
|
| >d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} | Back information, alignment and structure |
|---|
| >d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
| >d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} | Back information, alignment and structure |
|---|
| >d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
| >d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|