Query 002576
Match_columns 906
No_of_seqs 550 out of 2667
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 02:47:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002576.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002576hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2039 Transcriptional coacti 100.0 2.6E-81 5.7E-86 760.5 37.9 750 2-895 108-875 (875)
2 smart00318 SNc Staphylococcal 99.9 7E-25 1.5E-29 214.6 18.9 138 72-250 1-138 (138)
3 cd00175 SNc Staphylococcal nuc 99.9 9.9E-24 2.1E-28 204.0 16.2 129 80-250 1-129 (129)
4 KOG2039 Transcriptional coacti 99.9 8.2E-23 1.8E-27 250.0 20.7 516 264-882 3-625 (875)
5 PRK06518 hypothetical protein; 99.9 2.3E-21 5E-26 195.8 16.9 137 68-250 18-156 (177)
6 smart00318 SNc Staphylococcal 99.8 3.7E-20 8.1E-25 181.2 18.0 134 265-471 2-137 (138)
7 PF00567 TUDOR: Tudor domain; 99.8 2.8E-20 6.1E-25 175.9 12.8 119 646-771 2-121 (121)
8 cd00175 SNc Staphylococcal nuc 99.8 3.5E-19 7.6E-24 172.2 16.0 126 272-471 1-128 (129)
9 PF00565 SNase: Staphylococcal 99.8 6.3E-19 1.4E-23 164.6 9.8 106 99-250 1-108 (108)
10 COG1525 Micrococcal nuclease ( 99.7 1.1E-17 2.3E-22 173.3 14.0 129 74-251 42-172 (192)
11 PRK06518 hypothetical protein; 99.7 7.4E-17 1.6E-21 163.1 17.0 136 264-474 22-158 (177)
12 COG1525 Micrococcal nuclease ( 99.6 3.8E-15 8.3E-20 154.2 14.2 130 266-473 42-172 (192)
13 PF00565 SNase: Staphylococcal 99.6 3.4E-15 7.4E-20 139.4 11.4 100 529-629 1-108 (108)
14 smart00333 TUDOR Tudor domain. 99.3 5.2E-12 1.1E-16 104.5 6.6 56 695-757 2-57 (57)
15 cd04508 TUDOR Tudor domains ar 99.3 5.2E-12 1.1E-16 100.8 5.6 48 699-752 1-48 (48)
16 KOG2279 Kinase anchor protein 98.9 1.4E-09 3E-14 122.9 5.7 189 644-850 401-600 (608)
17 smart00743 Agenet Tudor-like d 98.5 2E-07 4.2E-12 78.4 6.5 55 696-756 3-59 (61)
18 PF06003 SMN: Survival motor n 98.1 5.4E-06 1.2E-10 90.0 6.1 58 694-756 67-124 (264)
19 PF09465 LBR_tudor: Lamin-B re 96.3 0.019 4E-07 46.9 6.9 51 695-751 5-55 (55)
20 KOG2279 Kinase anchor protein 95.7 0.0031 6.6E-08 72.7 0.2 184 646-850 314-502 (608)
21 PF05641 Agenet: Agenet domain 95.2 0.037 7.9E-07 47.7 5.4 54 697-756 2-66 (68)
22 PF11717 Tudor-knot: RNA bindi 92.2 0.36 7.9E-06 39.7 5.6 51 697-751 2-54 (55)
23 PF15057 DUF4537: Domain of un 90.5 0.78 1.7E-05 44.4 6.9 65 699-771 1-65 (124)
24 KOG4327 mRNA splicing protein 90.2 0.18 4E-06 51.3 2.3 54 694-752 66-119 (218)
25 KOG3026 Splicing factor SPF30 90.1 0.4 8.6E-06 50.3 4.6 56 695-755 90-145 (262)
26 PF15057 DUF4537: Domain of un 89.9 0.68 1.5E-05 44.8 5.9 105 646-757 11-116 (124)
27 KOG3038 Histone acetyltransfer 85.4 2.9 6.3E-05 44.8 7.7 149 582-739 64-238 (264)
28 PF07039 DUF1325: SGF29 tudor- 62.5 13 0.00028 36.4 4.9 88 646-743 16-115 (130)
29 cd05162 PWWP The PWWP domain, 57.5 18 0.00039 32.4 4.7 62 697-759 2-67 (87)
30 smart00293 PWWP domain with co 52.3 29 0.00063 29.2 4.8 56 697-753 2-62 (63)
31 PLN00104 MYST -like histone ac 50.5 26 0.00057 41.0 5.6 58 694-751 52-112 (450)
32 cd05834 HDGF_related The PWWP 49.7 27 0.00057 31.4 4.4 59 696-757 3-61 (83)
33 cd05841 BS69_related The PWWP 49.4 28 0.00062 31.3 4.5 55 695-757 6-61 (83)
34 PF09038 53-BP1_Tudor: Tumour 42.3 62 0.0014 31.2 5.8 48 698-752 5-52 (122)
35 KOG3038 Histone acetyltransfer 34.1 1.1E+02 0.0024 33.2 6.7 58 692-755 124-186 (264)
36 PF07039 DUF1325: SGF29 tudor- 33.4 1.2E+02 0.0026 29.7 6.4 54 697-755 1-60 (130)
37 PF11302 DUF3104: Protein of u 33.2 1.3E+02 0.0029 26.6 5.9 59 695-753 5-70 (75)
38 PF00855 PWWP: PWWP domain; I 29.5 1.3E+02 0.0029 26.3 5.7 58 697-755 2-60 (86)
39 cd06080 MUM1_like Mutated mela 28.7 1.2E+02 0.0026 27.2 5.0 55 697-757 2-57 (80)
40 PF02736 Myosin_N: Myosin N-te 26.3 1.9E+02 0.0042 22.3 5.3 38 702-748 4-41 (42)
41 PRK12442 translation initiatio 26.2 1.4E+02 0.003 27.2 4.9 31 73-104 8-38 (87)
42 COG1093 SUI2 Translation initi 25.5 4E+02 0.0086 29.3 9.1 67 694-810 7-74 (269)
43 TIGR00008 infA translation ini 24.5 1.6E+02 0.0035 25.5 4.9 31 73-104 6-36 (68)
44 smart00743 Agenet Tudor-like d 23.0 1.3E+02 0.0028 24.8 4.1 41 263-306 17-57 (61)
45 cd04508 TUDOR Tudor domains ar 21.0 1.2E+02 0.0026 23.4 3.3 36 263-303 12-47 (48)
46 COG0361 InfA Translation initi 20.5 2E+02 0.0043 25.6 4.7 32 72-104 7-38 (75)
No 1
>KOG2039 consensus Transcriptional coactivator p100 [Transcription]
Probab=100.00 E-value=2.6e-81 Score=760.50 Aligned_cols=750 Identities=43% Similarity=0.704 Sum_probs=647.3
Q ss_pred ceecccccCCCCchHHHHHHHHHHHHHHcCCCcccCCCCccccccccCCCCccCCCCccchHHHHhhhcCCceeEEEEEE
Q 002576 2 QVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQA 81 (906)
Q Consensus 2 kv~~~~~~~~~~~~~~~~L~~~e~~Ak~~~~G~w~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ve~V 81 (906)
+||+.+. ..++|...|...|.+|++.++|+|++. ....|++.|+. .++..|+..++++++.|+|++|
T Consensus 108 ~~~~~~~---~~~~~~~~l~~~~~~~k~~~~g~w~~~----~~~~~~~~~~~------~~p~~~~~~~~~~~~~~~ve~v 174 (875)
T KOG2039|consen 108 DVRDEGV---RNSSYFKTLDEVEVQAKQSGRGIWSKL----DHFIRNLKDSA------LNPAELVDAVGGKPVNAIVEHV 174 (875)
T ss_pred ccccccc---ccchhhhhhhhhhhhhhhhcccccccc----ccceeeccccc------cccHHHHHhcCCceeeeehhhc
Confidence 4555542 227899999999999999999999943 34578998874 5789999999999999999999
Q ss_pred ecCC-EEEEEEcCCCeEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHhhhhcccCCCCCCCchh
Q 002576 82 RDGS-TLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPF 160 (906)
Q Consensus 82 ~DGd-t~~v~l~~~~~~~~v~laGI~aPe~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 160 (906)
++|+ +.||.+.|++..++++|+|+.||.+..+. +|. + ...+||
T Consensus 175 ~~~~~~~rv~~~p~~~~~~v~lSg~~~P~~~~~s-----------~~~------------------------~-~~~~~~ 218 (875)
T KOG2039|consen 175 RDGEDTVRVLLRPELKYVTVRLSGKRCPSQGPPS-----------DGS------------------------P-SVPDPF 218 (875)
T ss_pred cChhhhhhHHhccccceeEEecccccCCCCCCCC-----------CCC------------------------C-CCCCcH
Confidence 9999 68888888888999999999999987532 111 1 235899
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeeccCCCcEEEEEEeCCCCChHHHHHHHHHcCceEEeecccccchHHHHHHHHHHHHHH
Q 002576 161 ALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQA 240 (906)
Q Consensus 161 g~eAk~f~e~~ll~r~V~v~~~~~D~~gr~~g~V~~~~g~~~~di~~~Ll~~GlA~~~~~~~~~~~~~~~~~l~~aE~~A 240 (906)
+.+|+.|++.++++|.|.|.+++...+..++|+|++++|+ |++.|+.+|++++++|+...+..+....++.+|..+
T Consensus 219 ~~~a~~f~~~~~~~r~~~i~~~~~~~~~~~~g~v~~~~~~----i~~~~~~~~~~k~v~~s~~~~~~~~~~~~~~~e~~~ 294 (875)
T KOG2039|consen 219 ADEAKLFSEDRLLQRAVAIPLESEENYVFFVGDVLYPDGN----IALELLSEGLAKCVDWSKNEIPCGAAKKLRAAERLA 294 (875)
T ss_pred HHHHHHhcccchhhhceeeeeccccccccccccccccccc----eeeehhccchHHHHHhhhhccCchhhhhhhHHhhcc
Confidence 9999999999999999999999999887889999999994 999999999999999999999888887899999999
Q ss_pred HHhcccc-ccccCCCCCCccccccceeeEEEEEEEeCCEEEEecCCCCCCCCCcceEEEEeeccCCCCCCCCCCCC--Cc
Q 002576 241 KKTRLRM-WTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEK--PA 317 (906)
Q Consensus 241 k~~r~Gl-W~~~~~~~~~~~~~~~~~~~~~V~~V~~gD~i~v~~~~~~~~~~~~~~~v~l~~i~~P~~~~~~~~~~--~~ 317 (906)
+..+..+ |+++.++.+++..+..+.|+++|++++.+||+.+..++ |+ +.++.+++|+.|+.+.+.+..+ ..
T Consensus 295 ~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~v~e~~~~d~~~~~~~s---g~---~~~~~~~~i~~pr~~~~~~~~~p~~~ 368 (875)
T KOG2039|consen 295 KEHRLRVLWKNYQVPLSTSESIDDKGFSGKVVEVLVSDCVLVALDS---GS---ENKLFLSSIRLPRAGEPGRSLKPYIS 368 (875)
T ss_pred chhHHHHHHhccccccchheeeccccccceeeeeeccCceEEecCC---CC---ceEEEeeeccCccccccccccCCccc
Confidence 9999999 99999998888776678899999999999999999976 33 7899999999999444333333 48
Q ss_pred hhHHHHHHHHHhhcCCcEEEEEEEEeeecccccccccccCCCCCCCCCCCCCCCccccCCCCCCcccCccccceeeEEEE
Q 002576 318 AYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSI 397 (906)
Q Consensus 318 ~~~~ea~e~lr~~l~Gk~v~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 397 (906)
||+.+|++|||+++||+.|.+.++|.|+.. +. +++ ..
T Consensus 369 ~~q~~a~~~~~~~~i~~~v~~~~~~~~~~~----------------~~---------------------~~~---~~--- 405 (875)
T KOG2039|consen 369 PVQLVAREFLRKKLIGKRVILQMDVIRPRR----------------EN---------------------VPT---KV--- 405 (875)
T ss_pred cHHHHhhhhhhhhccCceeeEeeecccccc----------------cc---------------------ccc---cc---
Confidence 999999999999999999999999998631 00 110 11
Q ss_pred EecCCCCCCCCCchhhhhcccCCCCCCccHHHHHHhcCceEEEEec-CccccchHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 002576 398 FLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPP 476 (906)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~lv~~G~a~v~~~~-~~~~~~~~~~~l~~ae~~A~~~~~G~~~~~~~~ 476 (906)
|.+.. +.|.|+++.++.+|++.+.+|| ++.+++.+||.|+.+|..|.+.++|+|+.+..+
T Consensus 406 --------------c~~~~-----~~~~~~a~~~~~kg~~~~v~~~~~~~~~s~~~d~ll~~E~~~~~~~~~~~s~~~~~ 466 (875)
T KOG2039|consen 406 --------------CALPL-----GGGKNVAELLVKKGLATVVRKRQDDEQRSSHYDLLLVAEAIAIKGKKGCHSKKLDP 466 (875)
T ss_pred --------------ccccC-----CCcceeeEEEecccchhhhhhHhhhhhhcchhhhhhcchHHHHhhhhhhcccCCCc
Confidence 22221 2479999999999999999999 688899999999999999999999999998876
Q ss_pred cceeeeCCccchhcccccchhhhcCCcccEEEEEEecCCEEEEEecCCceeEEEEEecccCCC-------CCCcchHHHH
Q 002576 477 VMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPG-------RNERYSNEAL 549 (906)
Q Consensus 477 ~~~i~d~~~~~~~~a~~~l~~l~~~~~~~~vVe~V~~G~~~~v~ip~e~~~I~~~LaGI~~P~-------~~e~~~~EA~ 549 (906)
.+++.+++..-..++..|++++++...+..+|+++++|+++++++|++.+.++|.++|++||+ .+++|+++|.
T Consensus 467 ~~~~~~~~~~i~~n~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~~~~~~g~~~~~~~r~~~~~~e~~~~~~~ 546 (875)
T KOG2039|consen 467 TLRITDLTVDIVRNKVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYCQFALAGIDCPSGARNDVQEGEPFSEEAI 546 (875)
T ss_pred ceeechhhhhhhcCcEEeehhhccccceeeeeeeeeccccceeccCCcceeEEEeeccccCcccccccccccCCccHHHH
Confidence 777888875333444599999999999999999999999999999999999999999999997 5899999999
Q ss_pred HHHHHHhcCceEEEEEEEECCCCcEEEEEEeC-CccHHHHHHHcCCeEEeeccCCCCCCchHHHHHHHHHHH-hhccccc
Q 002576 550 LLMRQKILQRDVEIEVETVDRTGTFLGSLWES-RTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAK-SQKLKIW 627 (906)
Q Consensus 550 ~flk~~llqR~V~v~v~~~Dk~G~~ig~L~~~-~~nia~~LVe~GLA~v~~~~s~~~~~~~~~L~~AE~~AK-~~k~giW 627 (906)
.|++.++++++++++++.+++.|+|+|.++.+ +.+++..++++||+.++ |..+.+.....|..++..|+ ..+.++|
T Consensus 547 ~~~~~~vl~~~~~l~v~~~~~~~~~l~~~~~~~~~~~s~~~~e~~L~~~~--~~~e~~~~~~~~~s~~~~ak~~~k~~~~ 624 (875)
T KOG2039|consen 547 EFTRSLVLQREVELEVEITDKNGNFLGSLYEDSKTNLSLKLLEQGLAPEH--FAAERSSEYPPLESAELPAKLEQKLKIW 624 (875)
T ss_pred HHhhhheeccceEEEEeeeccCccccccccccccccchhhhhhhhcCccc--hhhhhhhhccchhhhhhccccchhccee
Confidence 99999999999999999999999999999987 88999999999999997 77776777778899999999 9999999
Q ss_pred ccccccccccCC--ccccCCCCcEEEEEEEEEecCCeEEEEecC-cHHHHHHHHHHHHHHccCCCCCCCCCCcCCCEEEE
Q 002576 628 ENYVEGEEVSNG--AAVEGKQKEVLKVVVTEILGGGKFYVQQVG-DQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLA 704 (906)
Q Consensus 628 ~~~~~~~~~~~~--~~~~~~~~~~~~V~VT~V~sp~~FyvQ~~~-~~~le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA 704 (906)
.++.++..+... .........+..++++.|..++.||+|..+ ...+++||..|+.......|..+++.|+.|++|+|
T Consensus 625 ~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~i~p~~~F~~q~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~gd~c~A 704 (875)
T KOG2039|consen 625 LNYVEPVVEEVVLCLEKDERDLNTLKVVVTEITPGKGFYVQSISDGSKITKIMTNLSQLVELKPPSSGSYTPKRGDLCVA 704 (875)
T ss_pred ecccccchhhheecccccccccccceeeEeeecCCCcceeecccchHHHHHHHHHHHHHhhhcccccCCCCCCCCCeeee
Confidence 999876332111 111124456778888888877999999998 48899999999998887778888899999999999
Q ss_pred EEcCCCceEEEEEEeecccccccCCCEEEEEEeecCCeeeecCCCcccCCccccCcccccceeeecceecCCCCCCCcHH
Q 002576 705 QFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPE 784 (906)
Q Consensus 705 ~fs~D~~WYRA~Vv~~~~~~~~~~~~~v~V~fIDYGn~e~V~~s~Lr~Lp~~f~~lP~qAi~c~La~V~p~~~~~~w~~e 784 (906)
+|+.|++||||.|+++. ....++||||||||.+++|+.+|++||+.|..+|++|.+|+|++|+++. +.++.++
T Consensus 705 ~y~~D~qwyRa~i~~V~------~~~~~~V~yiDygn~E~lp~~~l~~lp~~~~~~p~~a~~~~L~~ik~~~-~~~~~e~ 777 (875)
T KOG2039|consen 705 KYSLDGQWYRALIVEVL------DPESMEVFYIDYGNIETLPFVRLKPLPPHFSLLPPVAQECGLAGIKEPQ-LEDLKEE 777 (875)
T ss_pred eeccccceeeeeeeeec------cCcceeEEEEecCcccccccccccCCChHHhcCchHHhhhhhhcccCCc-ccchHHH
Confidence 99999999999999984 2289999999999999999999999999999999999999999999985 5789999
Q ss_pred HHHHHhhccccCCCEEEEEEEEEeCCCCcccCCCCccEEEEEEEecCCCCcHHHHHHH-cCCeeEecccccCchhhHHHH
Q 002576 785 AAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQ-EGLARVERRKRWGSRDRQAAL 863 (906)
Q Consensus 785 A~~~l~~~llv~gk~l~a~V~~~~~~~~~~~~~~~~~~~~VtL~d~~~~~sIn~~LV~-~GlA~v~~~~~~~~~~~~~~~ 863 (906)
++.+|.+ .+.++.+++.+.... .+..++++|+...+..++++.|+. +|+.....++. .+.++...
T Consensus 778 ~i~~l~~--~~~~~~~~~~~~~~i----------~~~~~~~~l~~~~~~~d~~~~l~~~~~l~~~~~~~~--~~~~q~~~ 843 (875)
T KOG2039|consen 778 AIRYLDE--DTLGHKCQVNVELRV----------VGNSLLVTLLYTVEELDVGEELVAVEGLSLVEQRKT--EEVLQALL 843 (875)
T ss_pred HHHHHHH--Hhhcccceeeeeeee----------eccceeEEEeeecCcCChhHhhhhhccccccccccc--chHHHHHh
Confidence 9999999 677887777744332 145688999887789999999999 99999887662 26789999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCCCCCc
Q 002576 864 ENLEKFQEEAKTARIGMWQYGDIQSDDEDPLP 895 (906)
Q Consensus 864 ~~l~~aqe~Ak~~r~giW~yGDi~~dde~~~~ 895 (906)
+.|+.+|+.|++.|+++|.|||++.+|+|+++
T Consensus 844 ~~~~~~qq~a~~~~~~~~~y~~~~~~~~~~~~ 875 (875)
T KOG2039|consen 844 DQLEKAQQEARKEHLNIWFYGDVTGKDADEVV 875 (875)
T ss_pred hHhhhchhhHHhhhhhhhhhcCcccCcccccC
Confidence 99999999999999999999999999999873
No 2
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=99.93 E-value=7e-25 Score=214.56 Aligned_cols=138 Identities=32% Similarity=0.569 Sum_probs=117.1
Q ss_pred CceeEEEEEEecCCEEEEEEcCCCeEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHhhhhcccC
Q 002576 72 RPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASA 151 (906)
Q Consensus 72 ~~~~~~Ve~V~DGdt~~v~l~~~~~~~~v~laGI~aPe~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 151 (906)
++++|+|++|+|||||+|.+. .++.++|||+||||||+.+.+..
T Consensus 1 ~~~~~~V~~V~DGDT~~v~~~-~~~~~~vrL~gIdaPe~~~~~~~----------------------------------- 44 (138)
T smart00318 1 KEIRGVVERVLDGDTIRVRLP-KNKLITIRLSGIDAPETARPNKG----------------------------------- 44 (138)
T ss_pred CceeEEEEEEecCCEEEEEeC-CCCEEEEEEEeccCCccCCCCCC-----------------------------------
Confidence 367899999999999999864 44789999999999999753200
Q ss_pred CCCCCCchhHHHHHHHHHHHhcCCeEEEEEeeccCCCcEEEEEEeCCCCChHHHHHHHHHcCceEEeecccccchHHHHH
Q 002576 152 GQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKR 231 (906)
Q Consensus 152 ~~~~~~~p~g~eAk~f~e~~ll~r~V~v~~~~~D~~gr~~g~V~~~~g~~~~di~~~Ll~~GlA~~~~~~~~~~~~~~~~ 231 (906)
...+.+|||.+|+.|++.+|++++|+|.+.+.|+|||++|+|++.+|.+ |+++||++|||+++.++.+..... ..
T Consensus 45 -~~~~~~~~g~~A~~~l~~~l~g~~V~~~~~~~D~~gr~~a~v~~~~~~~---l~~~Lv~~G~A~~~~~~~~~~~~~-~~ 119 (138)
T smart00318 45 -DGTTDEPFGEEAKEFLKKLLLGKKVQVEVDSKDRYGRFLGTVYLNGGNN---IAEELVKEGLAKVYRYADKDEYRV-YD 119 (138)
T ss_pred -CccccCcHHHHHHHHHHHHhCCCEEEEEEeccCCCCCEEEEEEECCCCc---HHHHHHhcCCEEEEEecCccccHh-HH
Confidence 0123689999999999999999999999999999999999999987764 999999999999998776554322 24
Q ss_pred HHHHHHHHHHHhccccccc
Q 002576 232 RLKAADLQAKKTRLRMWTN 250 (906)
Q Consensus 232 ~l~~aE~~Ak~~r~GlW~~ 250 (906)
.|.+||++||++++|||++
T Consensus 120 ~l~~ae~~Ar~~~~GlW~~ 138 (138)
T smart00318 120 ELLEAEEAAKKARKGLWSD 138 (138)
T ss_pred HHHHHHHHHHHhCcCCCCC
Confidence 8999999999999999973
No 3
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=99.91 E-value=9.9e-24 Score=203.98 Aligned_cols=129 Identities=33% Similarity=0.567 Sum_probs=109.6
Q ss_pred EEecCCEEEEEEcCCCeEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHhhhhcccCCCCCCCch
Q 002576 80 QARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEP 159 (906)
Q Consensus 80 ~V~DGdt~~v~l~~~~~~~~v~laGI~aPe~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 159 (906)
+|+|||||+|.+. ..+.++|||+||||||+.+.+. + ...+.+|
T Consensus 1 rV~dGDt~~v~~~-~~~~~~vrL~gId~Pe~~~~~~-----------~-------------------------~~~~~~~ 43 (129)
T cd00175 1 RVIDGDTIRVRLP-PGPLITVRLSGIDAPETARPNK-----------G-------------------------KSETDEP 43 (129)
T ss_pred CeecCcEEEEEeC-CCCEEEEEEEeecCccccCCcc-----------C-------------------------CCCCCCc
Confidence 5899999999875 4478999999999999975320 0 0234799
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEeeccCCCcEEEEEEeCCCCChHHHHHHHHHcCceEEeecccccchHHHHHHHHHHHHH
Q 002576 160 FALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQ 239 (906)
Q Consensus 160 ~g~eAk~f~e~~ll~r~V~v~~~~~D~~gr~~g~V~~~~g~~~~di~~~Ll~~GlA~~~~~~~~~~~~~~~~~l~~aE~~ 239 (906)
||.+|++|+..+|++++|.|.+.+.|+|||++|+|++.++.+ |+++||++|||+++.++... ......|.+||.+
T Consensus 44 ~g~~A~~~l~~~l~~~~V~i~~~~~d~~gr~la~v~~~~~~~---v~~~Lv~~G~A~~~~~~~~~--~~~~~~l~~ae~~ 118 (129)
T cd00175 44 FGEEAKEFLKKLLLGKKVQVEVDSKDRYGRTLGTVYLNGGEN---IAEELVKEGLARVYRYYPDD--SEYYDELLEAEEA 118 (129)
T ss_pred hHHHHHHHHHHHhCCCEEEEEEccCCCCCCEEEEEEeCCCCc---HHHHHHhcCCEEEEEECCCC--cHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999976454 99999999999999876654 2345689999999
Q ss_pred HHHhccccccc
Q 002576 240 AKKTRLRMWTN 250 (906)
Q Consensus 240 Ak~~r~GlW~~ 250 (906)
||++|+|||++
T Consensus 119 Ak~~k~GiW~~ 129 (129)
T cd00175 119 AKKARKGLWSD 129 (129)
T ss_pred HHHhCcCCCCC
Confidence 99999999974
No 4
>KOG2039 consensus Transcriptional coactivator p100 [Transcription]
Probab=99.90 E-value=8.2e-23 Score=249.97 Aligned_cols=516 Identities=25% Similarity=0.342 Sum_probs=359.0
Q ss_pred ceeeEEEEEEEeCCEEEEecCCCCCCCCCcceEEEEeeccCCCCCCCCCCCCCchhHHHHHHHHHhhcCCcEEEEEEEEe
Q 002576 264 QNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYS 343 (906)
Q Consensus 264 ~~~~~~V~~V~~gD~i~v~~~~~~~~~~~~~~~v~l~~i~~P~~~~~~~~~~~~~~~~ea~e~lr~~l~Gk~v~~~~~y~ 343 (906)
+...|.|..|.+||+++|+.. +.+.|+.+..++|+++.+|++.....+ .++||++++++|+|+.++||.|.|..++.
T Consensus 3 ~~~~~~v~~v~s~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g-~d~p~~~~~~~~~~~~~~~k~~~v~~~~~ 79 (875)
T KOG2039|consen 3 QRLVGYVKAVLSGDAFVIRGS--PRAGPPPEFQINLSNVKAPNEARRDKG-VDEPFAWESREFLRKSEIGKEVAVTRDQM 79 (875)
T ss_pred eEEeeeEEEEeccCccEEEcc--cccCCCCCceEEEeecCCccccccCCC-CCCCcChhhHHHHHHHhccceeeeEEeee
Confidence 345799999999999999982 234567799999999999998743222 27999999999999999999999999994
Q ss_pred eecccccccccccCCCCCCCCCCCCCCCccccCCCCCCcccCccccceeeEEEEEecCCCCCCCCCchhhhhcccCCCCC
Q 002576 344 RKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPA 423 (906)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (906)
... + .+.+|.+++ +
T Consensus 80 ~~~-----------------~--------------------------~~e~~~~~~-----------------------~ 93 (875)
T KOG2039|consen 80 SAN-----------------N--------------------------GREVGFIYL-----------------------G 93 (875)
T ss_pred ccc-----------------c--------------------------ccccceeec-----------------------C
Confidence 321 2 267888887 3
Q ss_pred CccHHHHHHhcCceEEEEecCccccchHHHHHHHHHHHHHhcCCCCCCCCCCCcceeeeCCccchhcccccchhhhcCCc
Q 002576 424 GVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRR 503 (906)
Q Consensus 424 ~~nv~~~lv~~G~a~v~~~~~~~~~~~~~~~l~~ae~~A~~~~~G~~~~~~~~~~~i~d~~~~~~~~a~~~l~~l~~~~~ 503 (906)
+.++++.|+..||+++.+..... +.+...|.+.|.+|++.++|+|+.. .+-+.++.. ++...+.|+..+ .++.
T Consensus 94 ~~~~a~~lv~~g~~~~~~~~~~~--~~~~~~l~~~~~~~k~~~~g~w~~~---~~~~~~~~~-~~~~p~~~~~~~-~~~~ 166 (875)
T KOG2039|consen 94 DENSAESLVKEGLLDVRDEGVRN--SSYFKTLDEVEVQAKQSGRGIWSKL---DHFIRNLKD-SALNPAELVDAV-GGKP 166 (875)
T ss_pred cchhHHHHHhccCCccccccccc--chhhhhhhhhhhhhhhhcccccccc---ccceeeccc-cccccHHHHHhc-CCce
Confidence 57999999999999997643221 7888999999999999999999921 222566643 455667777766 4789
Q ss_pred ccEEEEEEecCC-EEEEEecCCceeEEEEEecccCCCC----------CCcchHHHHHHHHHHhcCceEEEEEEEECCCC
Q 002576 504 IPAVVEYVLSGH-RFKVLIPKETCSIAFSFSGVRCPGR----------NERYSNEALLLMRQKILQRDVEIEVETVDRTG 572 (906)
Q Consensus 504 ~~~vVe~V~~G~-~~~v~ip~e~~~I~~~LaGI~~P~~----------~e~~~~EA~~flk~~llqR~V~v~v~~~Dk~G 572 (906)
+.|+|++|.+|+ +.+++.-.++..+++.|+|+.||.. ..+|+.+|..|+..++++|++.+.+.+...+-
T Consensus 167 ~~~~ve~v~~~~~~~rv~~~p~~~~~~v~lSg~~~P~~~~~s~~~~~~~~~~~~~a~~f~~~~~~~r~~~i~~~~~~~~~ 246 (875)
T KOG2039|consen 167 VNAIVEHVRDGEDTVRVLLRPELKYVTVRLSGKRCPSQGPPSDGSPSVPDPFADEAKLFSEDRLLQRAVAIPLESEENYV 246 (875)
T ss_pred eeeehhhccChhhhhhHHhccccceeEEecccccCCCCCCCCCCCCCCCCcHHHHHHHhcccchhhhceeeeeccccccc
Confidence 999999999999 5777643377889999999999982 26899999999999999999999999987774
Q ss_pred cEEEEEEeCCccHHHHHHHcCCeEEeeccCCCCCC--chHHHHHHHHHHHhhcccc-cccccccccccCC----------
Q 002576 573 TFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIP--DSHLLEQAEKSAKSQKLKI-WENYVEGEEVSNG---------- 639 (906)
Q Consensus 573 ~~ig~L~~~~~nia~~LVe~GLA~v~~~~s~~~~~--~~~~L~~AE~~AK~~k~gi-W~~~~~~~~~~~~---------- 639 (906)
.++|.++++..+++..|+.+|++.+. .++....+ ....++.++..++..+..+ |+++..+....+.
T Consensus 247 ~~~g~v~~~~~~i~~~~~~~~~~k~v-~~s~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~v 325 (875)
T KOG2039|consen 247 FFVGDVLYPDGNIALELLSEGLAKCV-DWSKNEIPCGAAKKLRAAERLAKEHRLRVLWKNYQVPLSTSESIDDKGFSGKV 325 (875)
T ss_pred cccccccccccceeeehhccchHHHH-HhhhhccCchhhhhhhHHhhccchhHHHHHHhccccccchheeecccccccee
Confidence 57889988888999999999999886 45544333 3345889999999999999 9998765321100
Q ss_pred ------cc--ccCCCCcEEEEEEEEEe-----------------------------------------------------
Q 002576 640 ------AA--VEGKQKEVLKVVVTEIL----------------------------------------------------- 658 (906)
Q Consensus 640 ------~~--~~~~~~~~~~V~VT~V~----------------------------------------------------- 658 (906)
.. .....+....+.+..|.
T Consensus 326 ~e~~~~d~~~~~~~sg~~~~~~~~~i~~pr~~~~~~~~~p~~~~~q~~a~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~ 405 (875)
T KOG2039|consen 326 VEVLVSDCVLVALDSGSENKLFLSSIRLPRAGEPGRSLKPYISPVQLVAREFLRKKLIGKRVILQMDVIRPRRENVPTKV 405 (875)
T ss_pred eeeeccCceEEecCCCCceEEEeeeccCccccccccccCCccccHHHHhhhhhhhhccCceeeEeeeccccccccccccc
Confidence 00 00000111111111111
Q ss_pred ----cCCe---EEEEecCc----HHHHHHHHHHHHHHccCCCCCCCCCCcCCCEEEEEEcCC-CceEEEEEEeecccccc
Q 002576 659 ----GGGK---FYVQQVGD----QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSAD-NSWNRAMIVNAPREKVE 726 (906)
Q Consensus 659 ----sp~~---FyvQ~~~~----~~le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D-~~WYRA~Vv~~~~~~~~ 726 (906)
+++. +++....+ ....++-.+++..|. .-+.......+|..++..+..+ +.|++..+..+.
T Consensus 406 c~~~~~~~~~~a~~~~~kg~~~~v~~~~~~~~~s~~~d--~ll~~E~~~~~~~~~~~s~~~~~~~~~~~~~~~i~----- 478 (875)
T KOG2039|consen 406 CALPLGGGKNVAELLVKKGLATVVRKRQDDEQRSSHYD--LLLVAEAIAIKGKKGCHSKKLDPTLRITDLTVDIV----- 478 (875)
T ss_pred ccccCCCcceeeEEEecccchhhhhhHhhhhhhcchhh--hhhcchHHHHhhhhhhcccCCCcceeechhhhhhh-----
Confidence 2221 11221110 011111111222220 0111111222344444444334 579999888886
Q ss_pred cCCCEEEEEEeecCCeeeecCCCcccCCccccCcccccceeeecceec--CC-------CCCCCcHHHHHHHhhccccCC
Q 002576 727 SVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKI--PA-------LEDEYGPEAAEFLNEHTYNSS 797 (906)
Q Consensus 727 ~~~~~v~V~fIDYGn~e~V~~s~Lr~Lp~~f~~lP~qAi~c~La~V~p--~~-------~~~~w~~eA~~~l~~~llv~g 797 (906)
.+...-+.+.|.|+...+....+..-..-...+|.....|+++.-.. +. .+..|.++++++.+. ++..
T Consensus 479 -~n~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~~~~~~g~~~~~~~r~~~~~~e~~~~~~~~~~~~--~vl~ 555 (875)
T KOG2039|consen 479 -RNKVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYCQFALAGIDCPSGARNDVQEGEPFSEEAIEFTRS--LVLQ 555 (875)
T ss_pred -cCcEEeehhhccccceeeeeeeeeccccceeccCCcceeEEEeeccccCcccccccccccCCccHHHHHHhhh--heec
Confidence 45567788888888776655555554555567787777777655443 21 267899999999999 7888
Q ss_pred CEEEEEEEEEeCCCCcccCCCCccEEEEEEEecCCCCcHHHHHHHcCCeeEecccccCchhhHHHHHHHHHHHHHHH-Hh
Q 002576 798 NEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAK-TA 876 (906)
Q Consensus 798 k~l~a~V~~~~~~~~~~~~~~~~~~~~VtL~d~~~~~sIn~~LV~~GlA~v~~~~~~~~~~~~~~~~~l~~aqe~Ak-~~ 876 (906)
+.+.+.|..+..+|. .+.+... +.+.++...++++||+-.. .. ..+...+..|..++..|+ ..
T Consensus 556 ~~~~l~v~~~~~~~~---------~l~~~~~--~~~~~~s~~~~e~~L~~~~-~~----~e~~~~~~~~~s~~~~ak~~~ 619 (875)
T KOG2039|consen 556 REVELEVEITDKNGN---------FLGSLYE--DSKTNLSLKLLEQGLAPEH-FA----AERSSEYPPLESAELPAKLEQ 619 (875)
T ss_pred cceEEEEeeeccCcc---------ccccccc--cccccchhhhhhhhcCccc-hh----hhhhhhccchhhhhhccccch
Confidence 999999998876531 1111111 1267888899999999876 21 234567788899999999 99
Q ss_pred cccccc
Q 002576 877 RIGMWQ 882 (906)
Q Consensus 877 r~giW~ 882 (906)
..+||.
T Consensus 620 k~~~~~ 625 (875)
T KOG2039|consen 620 KLKIWL 625 (875)
T ss_pred hcceee
Confidence 999995
No 5
>PRK06518 hypothetical protein; Provisional
Probab=99.87 E-value=2.3e-21 Score=195.79 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=111.3
Q ss_pred hhcCCceeEEEEEEecCCEEEEEEc--CCCeEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHhh
Q 002576 68 ANKGRPMQGIVEQARDGSTLRVYLL--PEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLA 145 (906)
Q Consensus 68 ~~~~~~~~~~Ve~V~DGdt~~v~l~--~~~~~~~v~laGI~aPe~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 145 (906)
......+.|.| +|+|||||++... ..+..++|||+||||||+...+. .
T Consensus 18 ~~~~~~~~G~v-~V~DGDTl~l~~~~~~~~~~~~VRL~GIDAPE~~Q~c~---------~-------------------- 67 (177)
T PRK06518 18 SNNVVIFHGRA-QVTSGVTFKLIADGWRKEITRDIRLYGVDTCAPRQKAR---------L-------------------- 67 (177)
T ss_pred ccccccccceE-EEEcCCEEEEeeccccCCCCeEEEEEEEcCCCCCCccc---------C--------------------
Confidence 36778888999 7999999999621 11236899999999999875330 0
Q ss_pred hhcccCCCCCCCchhHHHHHHHHHHHhcCCeEEEEEeeccCCCcEEEEEEeCCCCChHHHHHHHHHcCceEEeecccccc
Q 002576 146 ASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMM 225 (906)
Q Consensus 146 ~~~~~~~~~~~~~p~g~eAk~f~e~~ll~r~V~v~~~~~D~~gr~~g~V~~~~g~~~~di~~~Ll~~GlA~~~~~~~~~~ 225 (906)
..+.+|||.+|+.||..+|+++.|++...+ |+|||++|+|+. +|. ||+++||++|||++|....+..
T Consensus 68 --------~~~~wp~G~~A~~~L~~li~gk~V~~~~~~-D~ygR~lA~~~~-~g~---dln~~mV~~G~A~ay~~~~~~~ 134 (177)
T PRK06518 68 --------GDQEWPCGAVATAWLVTKTLNKWLSCRQAR-MENGVHYAQCFV-DGV---DIAALGLAEGMAVLSKDDHEDP 134 (177)
T ss_pred --------CCCCCcHHHHHHHHHHHHHCCCeEEEEEec-ccCCCEEEEEEE-CCE---EHHHHHHhCCCEEEEeeccCCC
Confidence 124799999999999999999999999887 999999999997 444 4999999999999986544332
Q ss_pred hHHHHHHHHHHHHHHHHhccccccc
Q 002576 226 EEDAKRRLKAADLQAKKTRLRMWTN 250 (906)
Q Consensus 226 ~~~~~~~l~~aE~~Ak~~r~GlW~~ 250 (906)
. ...|..+|++||++|+|||+.
T Consensus 135 ~---~~~y~~aE~~AR~~k~GLW~~ 156 (177)
T PRK06518 135 G---PAQYASLEEKARKAYRGLWSS 156 (177)
T ss_pred C---HHHHHHHHHHHHHhCCCCCCC
Confidence 2 237999999999999999985
No 6
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=99.85 E-value=3.7e-20 Score=181.19 Aligned_cols=134 Identities=34% Similarity=0.505 Sum_probs=110.1
Q ss_pred eeeEEEEEEEeCCEEEEecCCCCCCCCCcceEEEEeeccCCCCCCCCCC--CCCchhHHHHHHHHHhhcCCcEEEEEEEE
Q 002576 265 NFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKD--EKPAAYAREAREFLRTRLIGRQVNVQMEY 342 (906)
Q Consensus 265 ~~~~~V~~V~~gD~i~v~~~~~~~~~~~~~~~v~l~~i~~P~~~~~~~~--~~~~~~~~ea~e~lr~~l~Gk~v~~~~~y 342 (906)
.+.|+|++|+|||||.|..++. ...+|+|++|+||+....... ...+|||.+|++||+++|.|+.|.+.++.
T Consensus 2 ~~~~~V~~V~DGDT~~v~~~~~------~~~~vrL~gIdaPe~~~~~~~~~~~~~~~g~~A~~~l~~~l~g~~V~~~~~~ 75 (138)
T smart00318 2 EIRGVVERVLDGDTIRVRLPKN------KLITIRLSGIDAPETARPNKGDGTTDEPFGEEAKEFLKKLLLGKKVQVEVDS 75 (138)
T ss_pred ceeEEEEEEecCCEEEEEeCCC------CEEEEEEEeccCCccCCCCCCCccccCcHHHHHHHHHHHHhCCCEEEEEEec
Confidence 5789999999999999997542 379999999999998754332 13689999999999999999999999876
Q ss_pred eeecccccccccccCCCCCCCCCCCCCCCccccCCCCCCcccCccccceeeEEEEEecCCCCCCCCCchhhhhcccCCCC
Q 002576 343 SRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQP 422 (906)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (906)
. |.| +|.+|+||+ .
T Consensus 76 ~--------------------D~~------------------------gr~~a~v~~----------------------~ 89 (138)
T smart00318 76 K--------------------DRY------------------------GRFLGTVYL----------------------N 89 (138)
T ss_pred c--------------------CCC------------------------CCEEEEEEE----------------------C
Confidence 3 222 378999998 2
Q ss_pred CCccHHHHHHhcCceEEEEecCccccchHHHHHHHHHHHHHhcCCCCCC
Q 002576 423 AGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYS 471 (906)
Q Consensus 423 ~~~nv~~~lv~~G~a~v~~~~~~~~~~~~~~~l~~ae~~A~~~~~G~~~ 471 (906)
+|.|||+.||++|||+++....... ...++.|.+||++|+++++|||+
T Consensus 90 ~~~~l~~~Lv~~G~A~~~~~~~~~~-~~~~~~l~~ae~~Ar~~~~GlW~ 137 (138)
T smart00318 90 GGNNIAEELVKEGLAKVYRYADKDE-YRVYDELLEAEEAAKKARKGLWS 137 (138)
T ss_pred CCCcHHHHHHhcCCEEEEEecCccc-cHhHHHHHHHHHHHHHhCcCCCC
Confidence 5678999999999999988653221 12278999999999999999997
No 7
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=99.83 E-value=2.8e-20 Score=175.89 Aligned_cols=119 Identities=33% Similarity=0.521 Sum_probs=98.3
Q ss_pred CCcEEEEEEEEEecCCeEEEEecC-cHHHHHHHHHHHHHHccCCCCCCCCCCcCCCEEEEEEcCCCceEEEEEEeecccc
Q 002576 646 QKEVLKVVVTEILGGGKFYVQQVG-DQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREK 724 (906)
Q Consensus 646 ~~~~~~V~VT~V~sp~~FyvQ~~~-~~~le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~Vv~~~~~~ 724 (906)
.++.+.|+||+|.+|++||++..+ ...+++|+++|+.++..... .....+.+|..|++.+..|+.||||+|....
T Consensus 2 ~~~~~~v~It~v~~~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~w~Ra~I~~~~--- 77 (121)
T PF00567_consen 2 VGKTFEVYITHVDSPGEFYVQPDSADKAYEKLQEELQDYYENNPK-SPSPESNPGEGCLCVVSEDGRWYRAVITVDI--- 77 (121)
T ss_dssp ---EEEEEEEEECTTSEEEEEECCCHHHHHHHHHHHHHHHHHS-C-TTCST--TTEEEEEEETTTSEEEEEEEEEEE---
T ss_pred CCCEEEEEEEEEecCCEEEEEEcCCHHHHHHHHHHHHHHHhcccc-cCccccccCCEEEEEEecCCceeeEEEEEec---
Confidence 467899999999999999998776 48899999999999976544 2345677899999999999999999992222
Q ss_pred cccCCCEEEEEEeecCCeeeecCCCcccCCccccCcccccceeeecc
Q 002576 725 VESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAY 771 (906)
Q Consensus 725 ~~~~~~~v~V~fIDYGn~e~V~~s~Lr~Lp~~f~~lP~qAi~c~La~ 771 (906)
..+.+.|+|||||+++.|+.++||.||+.|..+|+||++|+|+|
T Consensus 78 ---~~~~~~V~~iD~G~~~~v~~~~l~~l~~~~~~~P~~a~~~~L~g 121 (121)
T PF00567_consen 78 ---DENQYKVFLIDYGNTEKVSASDLRPLPPEFASLPPQAIKCKLAG 121 (121)
T ss_dssp ---CTTEEEEEETTTTEEEEEEGGGEEE--HHHCSSSSSCEEEEET-
T ss_pred ---ccceeEEEEEecCceEEEcHHHhhhhCHHHhhCChhhEEEEEcC
Confidence 68999999999999999999999999999999999999999986
No 8
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=99.81 E-value=3.5e-19 Score=172.22 Aligned_cols=126 Identities=36% Similarity=0.540 Sum_probs=105.9
Q ss_pred EEEeCCEEEEecCCCCCCCCCcceEEEEeeccCCCCCCCCC--CCCCchhHHHHHHHHHhhcCCcEEEEEEEEeeecccc
Q 002576 272 EVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRK--DEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVE 349 (906)
Q Consensus 272 ~V~~gD~i~v~~~~~~~~~~~~~~~v~l~~i~~P~~~~~~~--~~~~~~~~~ea~e~lr~~l~Gk~v~~~~~y~~~~~~~ 349 (906)
+|+|||||.|...+. ...+|+|++|+||++..+.. ....+|||.+|++||+++|.|+.|.|.+++.
T Consensus 1 rV~dGDt~~v~~~~~------~~~~vrL~gId~Pe~~~~~~~~~~~~~~~g~~A~~~l~~~l~~~~V~i~~~~~------ 68 (129)
T cd00175 1 RVIDGDTIRVRLPPG------PLITVRLSGIDAPETARPNKGKSETDEPFGEEAKEFLKKLLLGKKVQVEVDSK------ 68 (129)
T ss_pred CeecCcEEEEEeCCC------CEEEEEEEeecCccccCCccCCCCCCCchHHHHHHHHHHHhCCCEEEEEEccC------
Confidence 489999999998542 37899999999999875431 3458999999999999999999999998763
Q ss_pred cccccccCCCCCCCCCCCCCCCccccCCCCCCcccCccccceeeEEEEEecCCCCCCCCCchhhhhcccCCCCCCccHHH
Q 002576 350 AAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAE 429 (906)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~ 429 (906)
|.| +|.+|+||+. ++.|||+
T Consensus 69 --------------d~~------------------------gr~la~v~~~----------------------~~~~v~~ 88 (129)
T cd00175 69 --------------DRY------------------------GRTLGTVYLN----------------------GGENIAE 88 (129)
T ss_pred --------------CCC------------------------CCEEEEEEeC----------------------CCCcHHH
Confidence 222 3889999981 3589999
Q ss_pred HHHhcCceEEEEecCccccchHHHHHHHHHHHHHhcCCCCCC
Q 002576 430 LVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYS 471 (906)
Q Consensus 430 ~lv~~G~a~v~~~~~~~~~~~~~~~l~~ae~~A~~~~~G~~~ 471 (906)
.||++|||+++...... +.++..|.+||++|+++++|||+
T Consensus 89 ~Lv~~G~A~~~~~~~~~--~~~~~~l~~ae~~Ak~~k~GiW~ 128 (129)
T cd00175 89 ELVKEGLARVYRYYPDD--SEYYDELLEAEEAAKKARKGLWS 128 (129)
T ss_pred HHHhcCCEEEEEECCCC--cHHHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999876432 57899999999999999999997
No 9
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes. Staphylococcal nuclease has multidomain organisation []. The human cellular coactivator p100 contains four repeats, each of which is a SNase homologue. These repeats are unlikely to possess SNase-like activities as each lacks equivalent SNase catalytic residues, yet they may mediate p100's single-stranded DNA-binding function []. alA variety of proteins including many that are still uncharacterised belong to this group.; GO: 0003676 nucleic acid binding, 0016788 hydrolase activity, acting on ester bonds; PDB: 2PZT_A 2KQ3_A 2PZU_A 2PW5_A 2KHS_B 3QON_A 3QOJ_A 2OXP_A 3QOL_A 2PYK_A ....
Probab=99.78 E-value=6.3e-19 Score=164.62 Aligned_cols=106 Identities=30% Similarity=0.535 Sum_probs=87.5
Q ss_pred EEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHhhhhcccCCCCCCCchhHHHHHHHHHHHhcCCeEE
Q 002576 99 QVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVR 178 (906)
Q Consensus 99 ~v~laGI~aPe~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~eAk~f~e~~ll~r~V~ 178 (906)
+|||+|||||++.+.+ .+.+|||.+|+.|++.+|++++|.
T Consensus 1 ~vrL~gI~~Pe~~~~~----------------------------------------~~~~~~~~~A~~~l~~~l~~~~~~ 40 (108)
T PF00565_consen 1 KVRLAGIDAPETNQPD----------------------------------------KPEEPYGQEAKEFLRELLLGRQVV 40 (108)
T ss_dssp EEEETTEE-SSSTCCC----------------------------------------TTTSTTHHHHHHHHHHHHHTCSCE
T ss_pred CEEEEEEECCCCCCCC----------------------------------------CccchHHHHHHHHHHHHhCCCeee
Confidence 6999999999987522 247999999999999999999999
Q ss_pred EEEeec--cCCCcEEEEEEeCCCCChHHHHHHHHHcCceEEeecccccchHHHHHHHHHHHHHHHHhccccccc
Q 002576 179 IVLEGV--DKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTN 250 (906)
Q Consensus 179 v~~~~~--D~~gr~~g~V~~~~g~~~~di~~~Ll~~GlA~~~~~~~~~~~~~~~~~l~~aE~~Ak~~r~GlW~~ 250 (906)
+...+. |++||++|+|+++ +. |||++||++|||+++...... ......|..||++||+.|+|||++
T Consensus 41 ~~~~~~~~d~~gr~~~~v~~~-~~---~in~~Ll~~GlA~v~~~~~~~--~~~~~~~~~ae~~A~~~k~GiW~~ 108 (108)
T PF00565_consen 41 VEVDDIKQDKYGRLLAYVYVD-GE---DINEELLEEGLARVYRRYPSN--SEYYASLLQAEEEARKAKKGIWSE 108 (108)
T ss_dssp EEEEESSBSTTSCEEEEEEET-TE---EHHHHHHHTTSSEE-CGBTTB--CTTHHHHHHHHHHHHHTT-GGGCT
T ss_pred ecccccCCCCCCceeEEEEEe-ch---hhhHHHHhCCeEEEEEecCCC--cHHHHHHHHHHHHHHHhCcCCCCC
Confidence 999877 9999999999997 44 499999999999998744331 123458999999999999999985
No 10
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]
Probab=99.75 E-value=1.1e-17 Score=173.26 Aligned_cols=129 Identities=29% Similarity=0.403 Sum_probs=108.7
Q ss_pred eeEEEEEEecCCEEEEEEcCCCeEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHhhhhcccCCC
Q 002576 74 MQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQ 153 (906)
Q Consensus 74 ~~~~Ve~V~DGdt~~v~l~~~~~~~~v~laGI~aPe~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (906)
..+.|.+|.|||||.|... ..+.++|||+|||+||+...+ .
T Consensus 42 ~~~~v~~v~dGDT~~v~~~-~~~~~~iRl~gIdaPe~~~~~-----------~--------------------------- 82 (192)
T COG1525 42 PDSTVVRVIDGDTLKVRGE-GGQAVKIRLAGIDAPETKQTC-----------A--------------------------- 82 (192)
T ss_pred CCCceEEecCCCeEEEecC-CCceeEEEEeccCCCcccccC-----------C---------------------------
Confidence 5678999999999999864 357899999999999987421 0
Q ss_pred CCCCchhHHHHHHHHHHHhcC-CeEEEEEee-ccCCCcEEEEEEeCCCCChHHHHHHHHHcCceEEeecccccchHHHHH
Q 002576 154 QSTDEPFALDAKYFTEMRVLN-REVRIVLEG-VDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKR 231 (906)
Q Consensus 154 ~~~~~p~g~eAk~f~e~~ll~-r~V~v~~~~-~D~~gr~~g~V~~~~g~~~~di~~~Ll~~GlA~~~~~~~~~~~~~~~~ 231 (906)
....+|||.+|+.|++..|++ +.|++.+.. .|+|||++|.|+ .+|. |||++||++|||+++. ... ...
T Consensus 83 ~~~~~~~G~~A~~~l~~~l~~~~~v~~~~~~~~d~y~R~la~v~-~~~~---~v~~~lV~~G~A~~~~--~~~----~~~ 152 (192)
T COG1525 83 GGKSQPCGEEAREFLRNLLLGRRTVECDLADRKDRYGRLLAYVT-VDGT---DVNLELVKEGLARVYY--NSE----YGG 152 (192)
T ss_pred cccccchHHHHHHHHHHHhcCCceEEEecCCcccCCCcEEEEEE-ECCE---EHHHHHHhCCCEEEec--ccc----chH
Confidence 123689999999999999996 889998888 999999999999 4655 4999999999999987 111 224
Q ss_pred HHHHHHHHHHHhcccccccc
Q 002576 232 RLKAADLQAKKTRLRMWTNY 251 (906)
Q Consensus 232 ~l~~aE~~Ak~~r~GlW~~~ 251 (906)
.|..||..||+.++|||+..
T Consensus 153 ~~~~ae~~Ar~~~~GiW~~~ 172 (192)
T COG1525 153 EYAEAEEEARKRRLGIWSDD 172 (192)
T ss_pred HHHHHHHHHHHcccCccCCC
Confidence 79999999999999999985
No 11
>PRK06518 hypothetical protein; Provisional
Probab=99.73 E-value=7.4e-17 Score=163.12 Aligned_cols=136 Identities=16% Similarity=0.215 Sum_probs=105.7
Q ss_pred ceeeEEEEEEEeCCEEEEecCCCCCCCCCcceEEEEeeccCCCCCCCC-CCCCCchhHHHHHHHHHhhcCCcEEEEEEEE
Q 002576 264 QNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPR-KDEKPAAYAREAREFLRTRLIGRQVNVQMEY 342 (906)
Q Consensus 264 ~~~~~~V~~V~~gD~i~v~~~~~~~~~~~~~~~v~l~~i~~P~~~~~~-~~~~~~~~~~ea~e~lr~~l~Gk~v~~~~~y 342 (906)
..++|+| +|++||||.|..+.. .....++|+|.+|+||+..... .+....|||.+|++||+.++.|+.|.+....
T Consensus 22 ~~~~G~v-~V~DGDTl~l~~~~~---~~~~~~~VRL~GIDAPE~~Q~c~~~~~~wp~G~~A~~~L~~li~gk~V~~~~~~ 97 (177)
T PRK06518 22 VIFHGRA-QVTSGVTFKLIADGW---RKEITRDIRLYGVDTCAPRQKARLGDQEWPCGAVATAWLVTKTLNKWLSCRQAR 97 (177)
T ss_pred ccccceE-EEEcCCEEEEeeccc---cCCCCeEEEEEEEcCCCCCCcccCCCCCCcHHHHHHHHHHHHHCCCeEEEEEec
Confidence 4689999 799999999975321 1112689999999999986432 1235679999999999999999999988532
Q ss_pred eeecccccccccccCCCCCCCCCCCCCCCccccCCCCCCcccCccccceeeEEEEEecCCCCCCCCCchhhhhcccCCCC
Q 002576 343 SRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQP 422 (906)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (906)
|.| +|.++.|++
T Consensus 98 ---------------------D~y------------------------gR~lA~~~~----------------------- 109 (177)
T PRK06518 98 ---------------------MEN------------------------GVHYAQCFV----------------------- 109 (177)
T ss_pred ---------------------ccC------------------------CCEEEEEEE-----------------------
Confidence 222 378899987
Q ss_pred CCccHHHHHHhcCceEEEEecCccccchHHHHHHHHHHHHHhcCCCCCCCCC
Q 002576 423 AGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKE 474 (906)
Q Consensus 423 ~~~nv~~~lv~~G~a~v~~~~~~~~~~~~~~~l~~ae~~A~~~~~G~~~~~~ 474 (906)
+|.|||++||++|||+++....+ ..+...|..+|+.|++.++|||+.+.
T Consensus 110 ~g~dln~~mV~~G~A~ay~~~~~---~~~~~~y~~aE~~AR~~k~GLW~~~~ 158 (177)
T PRK06518 110 DGVDIAALGLAEGMAVLSKDDHE---DPGPAQYASLEEKARKAYRGLWSSTF 158 (177)
T ss_pred CCEEHHHHHHhCCCEEEEeeccC---CCCHHHHHHHHHHHHHhCCCCCCCCC
Confidence 57899999999999999874321 12345688999999999999999643
No 12
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]
Probab=99.62 E-value=3.8e-15 Score=154.18 Aligned_cols=130 Identities=28% Similarity=0.382 Sum_probs=108.2
Q ss_pred eeEEEEEEEeCCEEEEecCCCCCCCCCcceEEEEeeccCCCCCCCCCCCCCchhHHHHHHHHHhhcCC-cEEEEEEEEee
Q 002576 266 FTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIG-RQVNVQMEYSR 344 (906)
Q Consensus 266 ~~~~V~~V~~gD~i~v~~~~~~~~~~~~~~~v~l~~i~~P~~~~~~~~~~~~~~~~ea~e~lr~~l~G-k~v~~~~~y~~ 344 (906)
..++|..|++||||.+..... ...+|+|.+|++|+..+.....+..||+.+|++||++++.| +.|.+...- +
T Consensus 42 ~~~~v~~v~dGDT~~v~~~~~------~~~~iRl~gIdaPe~~~~~~~~~~~~~G~~A~~~l~~~l~~~~~v~~~~~~-~ 114 (192)
T COG1525 42 PDSTVVRVIDGDTLKVRGEGG------QAVKIRLAGIDAPETKQTCAGGKSQPCGEEAREFLRNLLLGRRTVECDLAD-R 114 (192)
T ss_pred CCCceEEecCCCeEEEecCCC------ceeEEEEeccCCCcccccCCcccccchHHHHHHHHHHHhcCCceEEEecCC-c
Confidence 568999999999999998542 37899999999999987654567899999999999999998 555544322 1
Q ss_pred ecccccccccccCCCCCCCCCCCCCCCccccCCCCCCcccCccccceeeEEEEEecCCCCCCCCCchhhhhcccCCCCCC
Q 002576 345 KVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAG 424 (906)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (906)
. |.| +|.++.||. +|
T Consensus 115 ~------------------d~y------------------------~R~la~v~~-----------------------~~ 129 (192)
T COG1525 115 K------------------DRY------------------------GRLLAYVTV-----------------------DG 129 (192)
T ss_pred c------------------cCC------------------------CcEEEEEEE-----------------------CC
Confidence 1 444 488899985 78
Q ss_pred ccHHHHHHhcCceEEEEecCccccchHHHHHHHHHHHHHhcCCCCCCCC
Q 002576 425 VNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSK 473 (906)
Q Consensus 425 ~nv~~~lv~~G~a~v~~~~~~~~~~~~~~~l~~ae~~A~~~~~G~~~~~ 473 (906)
.|||+.||+.|||.++. ++.++..|.+||+.|++.++|||+..
T Consensus 130 ~~v~~~lV~~G~A~~~~------~~~~~~~~~~ae~~Ar~~~~GiW~~~ 172 (192)
T COG1525 130 TDVNLELVKEGLARVYY------NSEYGGEYAEAEEEARKRRLGIWSDD 172 (192)
T ss_pred EEHHHHHHhCCCEEEec------cccchHHHHHHHHHHHHcccCccCCC
Confidence 99999999999999988 35678999999999999999999984
No 13
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes. Staphylococcal nuclease has multidomain organisation []. The human cellular coactivator p100 contains four repeats, each of which is a SNase homologue. These repeats are unlikely to possess SNase-like activities as each lacks equivalent SNase catalytic residues, yet they may mediate p100's single-stranded DNA-binding function []. alA variety of proteins including many that are still uncharacterised belong to this group.; GO: 0003676 nucleic acid binding, 0016788 hydrolase activity, acting on ester bonds; PDB: 2PZT_A 2KQ3_A 2PZU_A 2PW5_A 2KHS_B 3QON_A 3QOJ_A 2OXP_A 3QOL_A 2PYK_A ....
Probab=99.61 E-value=3.4e-15 Score=139.37 Aligned_cols=100 Identities=30% Similarity=0.504 Sum_probs=87.5
Q ss_pred EEEEecccCCCCC------CcchHHHHHHHHHHhcCceEEEEEEEE--CCCCcEEEEEEeCCccHHHHHHHcCCeEEeec
Q 002576 529 AFSFSGVRCPGRN------ERYSNEALLLMRQKILQRDVEIEVETV--DRTGTFLGSLWESRTNVAVILLEAGLAKLQTS 600 (906)
Q Consensus 529 ~~~LaGI~~P~~~------e~~~~EA~~flk~~llqR~V~v~v~~~--Dk~G~~ig~L~~~~~nia~~LVe~GLA~v~~~ 600 (906)
+++|+||++|+.. ++|+.+|+.|++++++++.+.+.+.+. |++|+++|.|+.++.||+..||++|||+++..
T Consensus 1 ~vrL~gI~~Pe~~~~~~~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~d~~gr~~~~v~~~~~~in~~Ll~~GlA~v~~~ 80 (108)
T PF00565_consen 1 KVRLAGIDAPETNQPDKPEEPYGQEAKEFLRELLLGRQVVVEVDDIKQDKYGRLLAYVYVDGEDINEELLEEGLARVYRR 80 (108)
T ss_dssp EEEETTEE-SSSTCCCTTTSTTHHHHHHHHHHHHHTCSCEEEEEESSBSTTSCEEEEEEETTEEHHHHHHHTTSSEE-CG
T ss_pred CEEEEEEECCCCCCCCCccchHHHHHHHHHHHHhCCCeeeecccccCCCCCCceeEEEEEechhhhHHHHhCCeEEEEEe
Confidence 5899999999965 899999999999999999999999988 99999999999999999999999999998642
Q ss_pred cCCCCCCchHHHHHHHHHHHhhccccccc
Q 002576 601 FGSDRIPDSHLLEQAEKSAKSQKLKIWEN 629 (906)
Q Consensus 601 ~s~~~~~~~~~L~~AE~~AK~~k~giW~~ 629 (906)
+. ........|..||+.||..++|||++
T Consensus 81 ~~-~~~~~~~~~~~ae~~A~~~k~GiW~~ 108 (108)
T PF00565_consen 81 YP-SNSEYYASLLQAEEEARKAKKGIWSE 108 (108)
T ss_dssp BT-TBCTTHHHHHHHHHHHHHTT-GGGCT
T ss_pred cC-CCcHHHHHHHHHHHHHHHhCcCCCCC
Confidence 22 24456788999999999999999984
No 14
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=99.29 E-value=5.2e-12 Score=104.53 Aligned_cols=56 Identities=43% Similarity=0.785 Sum_probs=51.1
Q ss_pred CCcCCCEEEEEEcCCCceEEEEEEeecccccccCCCEEEEEEeecCCeeeecCCCcccCCccc
Q 002576 695 NPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSL 757 (906)
Q Consensus 695 ~p~~G~lcaA~fs~D~~WYRA~Vv~~~~~~~~~~~~~v~V~fIDYGn~e~V~~s~Lr~Lp~~f 757 (906)
.+++|++|+|+| .|+.||||+|+++. ..+.+.|+|+|||+.+.|+.++||+||+.+
T Consensus 2 ~~~~G~~~~a~~-~d~~wyra~I~~~~------~~~~~~V~f~D~G~~~~v~~~~l~~l~~~~ 57 (57)
T smart00333 2 TFKVGDKVAARW-EDGEWYRARIIKVD------GEQLYEVFFIDYGNEEVVPPSDLRPLPEEL 57 (57)
T ss_pred CCCCCCEEEEEe-CCCCEEEEEEEEEC------CCCEEEEEEECCCccEEEeHHHeecCCCCC
Confidence 478999999999 89999999999995 338999999999999999999999998753
No 15
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=99.28 E-value=5.2e-12 Score=100.78 Aligned_cols=48 Identities=48% Similarity=0.946 Sum_probs=44.2
Q ss_pred CCEEEEEEcCCCceEEEEEEeecccccccCCCEEEEEEeecCCeeeecCCCccc
Q 002576 699 GEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRP 752 (906)
Q Consensus 699 G~lcaA~fs~D~~WYRA~Vv~~~~~~~~~~~~~v~V~fIDYGn~e~V~~s~Lr~ 752 (906)
|++|+|+|++|+.||||+|+++. ..+.+.|+|+||||.+.|+.++|++
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~------~~~~~~V~f~DyG~~~~v~~~~l~~ 48 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSIL------SDGKVEVFFVDYGNTEVVPLSDLRP 48 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEEC------CCCcEEEEEEcCCCcEEEeHHHcCC
Confidence 78999999989999999999995 4788999999999999999998874
No 16
>KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms]
Probab=98.89 E-value=1.4e-09 Score=122.86 Aligned_cols=189 Identities=16% Similarity=0.095 Sum_probs=141.9
Q ss_pred CCCCcEEEEEEEEEecCCeEEEEecCc---HHHHHHHHHHHHHHccCCCCC-CCCCCcCCCEEEEEEcCCCceEEEEEEe
Q 002576 644 GKQKEVLKVVVTEILGGGKFYVQQVGD---QKVASVQQQLASLNLQEAPVI-GAFNPKKGEIVLAQFSADNSWNRAMIVN 719 (906)
Q Consensus 644 ~~~~~~~~V~VT~V~sp~~FyvQ~~~~---~~le~L~~~L~~~~~~~~p~~-~~~~p~~G~lcaA~fs~D~~WYRA~Vv~ 719 (906)
++.+..+.|.|..+.+.++||+|.... ..|..+-..|..+|......+ .+.++..+-+|+|.- .++-|.||.+++
T Consensus 401 fpd~i~cev~V~s~i~a~hlf~pq~tip~F~aLrsldqwm~l~y~eq~t~pelP~P~~~t~~sAAp~-g~~awpra~lvd 479 (608)
T KOG2279|consen 401 FPDNIDCEVKVLSAIRADHLFLPQQTIPCFLALRSLDQWMELAYDEQLTHPELPKPLVATISSAAPT-GISAWPRAYLVD 479 (608)
T ss_pred cCCCceEEeeeehhhcccceeeccccchhhhhhhhHHHHHHHHhhcccCCcCCCcchhhceeeeccc-CCCCccceEEEe
Confidence 445678899999999999999999874 456677778888876322111 123455788888874 678999999998
Q ss_pred ecccccccCCCE-EEEEEeecCCeeeecCCCcccCCccccCcccccceeeecceecCCCCCCCcHHHHHHHhhccccCCC
Q 002576 720 APREKVESVNDK-FEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSN 798 (906)
Q Consensus 720 ~~~~~~~~~~~~-v~V~fIDYGn~e~V~~s~Lr~Lp~~f~~lP~qAi~c~La~V~p~~~~~~w~~eA~~~l~~~llv~gk 798 (906)
... ..+. +.+.||||| ...+...+||++-..|.+||+|+.+..|+.|.|......|+++|...|.. ++.++
T Consensus 480 ~~d-----et~l~I~~~~VdyG-Y~~~~~ddlrqiRsd~~slPfq~tEv~l~~v~pl~~t~~~Spea~h~~s~--Msi~~ 551 (608)
T KOG2279|consen 480 TSD-----ETKLDIGLELVDYG-YAIELPDDLRQIRSDPDSLPFQATEVDLSLVTPLTETKKSSPEATHTLSC--MSISE 551 (608)
T ss_pred ccC-----cccchhhheeeccc-ccccchhhhhhhhcccccCCcccchhhHhheeccCCCcCcCcccccchhh--hhhhh
Confidence 752 3444 899999999 88999999999999999999999999999999998888999999999999 55554
Q ss_pred EEEEEEEEEeCCCCcccCCCCccEEEEEEEecC------CCCcHHHHHHHcCCeeEec
Q 002576 799 EFRALVEERDSSGGKLKGQGTGTLLHVTLVAVD------AEISINTLMVQEGLARVER 850 (906)
Q Consensus 799 ~l~a~V~~~~~~~~~~~~~~~~~~~~VtL~d~~------~~~sIn~~LV~~GlA~v~~ 850 (906)
...+.-+....+ ....++.||... +..-+++.|++.|+|....
T Consensus 552 ~a~~~~v~~~~d---------t~Lp~~ql~s~~~D~k~~n~vk~~q~l~ecGla~~ad 600 (608)
T KOG2279|consen 552 AASMSGVDNLED---------TYLPGSQLFSLLSDLKCCNSVKHAQPLNECGLASVAD 600 (608)
T ss_pred hhhhhccccccc---------ccchhhhhhhhhccccccchhhhhhhhhhcccccccc
Confidence 443333322211 123445555321 2455789999999998764
No 17
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=98.53 E-value=2e-07 Score=78.40 Aligned_cols=55 Identities=29% Similarity=0.404 Sum_probs=50.5
Q ss_pred CcCCCEEEEEEcCCCceEEEEEEeecccccccCCCEEEEEEee--cCCeeeecCCCcccCCcc
Q 002576 696 PKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYID--YGNQELVPYNKLRPIDPS 756 (906)
Q Consensus 696 p~~G~lcaA~fs~D~~WYRA~Vv~~~~~~~~~~~~~v~V~fID--YGn~e~V~~s~Lr~Lp~~ 756 (906)
.++|+.|-|+|++++.||||+|+++. ..+++.|+|+| +|+.++++.++||++|+.
T Consensus 3 ~~~G~~Ve~~~~~~~~W~~a~V~~~~------~~~~~~V~~~~~~~~~~e~v~~~~LRp~~~w 59 (61)
T smart00743 3 FKKGDRVEVFSKEEDSWWEAVVTKVL------GDGKYLVRYLTESEPLKETVDWSDLRPHPPW 59 (61)
T ss_pred cCCCCEEEEEECCCCEEEEEEEEEEC------CCCEEEEEECCCCcccEEEEeHHHcccCCCC
Confidence 57999999999999999999999985 45789999999 999999999999999863
No 18
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=98.05 E-value=5.4e-06 Score=89.98 Aligned_cols=58 Identities=26% Similarity=0.390 Sum_probs=47.6
Q ss_pred CCCcCCCEEEEEEcCCCceEEEEEEeecccccccCCCEEEEEEeecCCeeeecCCCcccCCcc
Q 002576 694 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPS 756 (906)
Q Consensus 694 ~~p~~G~lcaA~fs~D~~WYRA~Vv~~~~~~~~~~~~~v~V~fIDYGn~e~V~~s~Lr~Lp~~ 756 (906)
...++|+.|.|.|++||+||-|.|..|.. ..+.+.|.|.+|||.|.|.+++|++....
T Consensus 67 ~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~-----~~~~~~V~f~gYgn~e~v~l~dL~~~~~~ 124 (264)
T PF06003_consen 67 KKWKVGDKCMAVYSEDGQYYPATIESIDE-----EDGTCVVVFTGYGNEEEVNLSDLKPSEGD 124 (264)
T ss_dssp T---TT-EEEEE-TTTSSEEEEEEEEEET-----TTTEEEEEETTTTEEEEEEGGGEEETT--
T ss_pred cCCCCCCEEEEEECCCCCEEEEEEEEEcC-----CCCEEEEEEcccCCeEeeehhhhcccccc
Confidence 57899999999999999999999999963 46799999999999999999999999765
No 19
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=96.25 E-value=0.019 Score=46.87 Aligned_cols=51 Identities=18% Similarity=0.410 Sum_probs=40.2
Q ss_pred CCcCCCEEEEEEcCCCceEEEEEEeecccccccCCCEEEEEEeecCCeeeecCCCcc
Q 002576 695 NPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLR 751 (906)
Q Consensus 695 ~p~~G~lcaA~fs~D~~WYRA~Vv~~~~~~~~~~~~~v~V~fIDYGn~e~V~~s~Lr 751 (906)
....|+.|.+++..++.||.|+|++.+. ....+.|.|-| |....++.++|+
T Consensus 5 k~~~Ge~V~~rWP~s~lYYe~kV~~~d~-----~~~~y~V~Y~D-Gtel~lke~dik 55 (55)
T PF09465_consen 5 KFAIGEVVMVRWPGSSLYYEGKVLSYDS-----KSDRYTVLYED-GTELELKENDIK 55 (55)
T ss_dssp SS-SS-EEEEE-TTTS-EEEEEEEEEET-----TTTEEEEEETT-S-EEEEECCCEE
T ss_pred cccCCCEEEEECCCCCcEEEEEEEEecc-----cCceEEEEEcC-CCEEEecccccC
Confidence 4568999999999999999999999863 68999999999 998888877763
No 20
>KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms]
Probab=95.67 E-value=0.0031 Score=72.67 Aligned_cols=184 Identities=16% Similarity=0.167 Sum_probs=125.6
Q ss_pred CCcEEEEEEEEEecCCeEEEEecCc--HHHHHHHHHHHHHHccCCCCCCCCCCcCCCEEEEEEcCCCceEEEEEEeeccc
Q 002576 646 QKEVLKVVVTEILGGGKFYVQQVGD--QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPRE 723 (906)
Q Consensus 646 ~~~~~~V~VT~V~sp~~FyvQ~~~~--~~le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~Vv~~~~~ 723 (906)
.++++.++.+.-..+.+||.|...+ -.++....++..++.+..... .....++..++...-.+-||++.+....
T Consensus 314 ~gey~s~yssasn~~~hi~t~pyt~~v~~~qic~~egkqh~~n~vl~m--l~~~~p~~~f~eLnl~~~~~p~lps~al-- 389 (608)
T KOG2279|consen 314 AGEYLSVYSSASNHPNHIWTQPYTSRVLQLQICVNEGKQHYENSVLEM--LTVHVPDIVFAELNLNGSWYPALPSGAL-- 389 (608)
T ss_pred hhhhhhhhhhccCccceEEeccccchhhhhhhheecchhHHHHHHHhh--hhccCCccccccccccCccCcccCcccc--
Confidence 5778888888888899999999874 234555556666665433221 1223344444444447889999887764
Q ss_pred ccccCCCEEEEEEeecCCeeeecCCCcccCCccccCcccccceeeecceecCCCCCCCcHHHHHH-HhhccccCCCEEEE
Q 002576 724 KVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEF-LNEHTYNSSNEFRA 802 (906)
Q Consensus 724 ~~~~~~~~v~V~fIDYGn~e~V~~s~Lr~Lp~~f~~lP~qAi~c~La~V~p~~~~~~w~~eA~~~-l~~~llv~gk~l~a 802 (906)
....-...++||+....+....+..|...+..+|.++|.|.++ +. .-..|...+..- +-- -..=+.|.+
T Consensus 390 ----~~L~td~~wL~fpd~i~cev~V~s~i~a~hlf~pq~tip~F~a-Lr---sldqwm~l~y~eq~t~--pelP~P~~~ 459 (608)
T KOG2279|consen 390 ----ENLNTDLYWLDFPDNIDCEVKVLSAIRADHLFLPQQTIPCFLA-LR---SLDQWMELAYDEQLTH--PELPKPLVA 459 (608)
T ss_pred ----cccCCcceEEEcCCCceEEeeeehhhcccceeeccccchhhhh-hh---hHHHHHHHHhhcccCC--cCCCcchhh
Confidence 3455677899999999999999999999999999999999998 22 135676665542 211 122366777
Q ss_pred EEEEEeCCCCcccCCCCccEEEEEEEecC--CCCcHHHHHHHcCCeeEec
Q 002576 803 LVEERDSSGGKLKGQGTGTLLHVTLVAVD--AEISINTLMVQEGLARVER 850 (906)
Q Consensus 803 ~V~~~~~~~~~~~~~~~~~~~~VtL~d~~--~~~sIn~~LV~~GlA~v~~ 850 (906)
++..--+.|. +.-..+.|+++. .+.+|.-.||..||+...+
T Consensus 460 t~~sAAp~g~-------~awpra~lvd~~det~l~I~~~~VdyGY~~~~~ 502 (608)
T KOG2279|consen 460 TISSAAPTGI-------SAWPRAYLVDTSDETKLDIGLELVDYGYAIELP 502 (608)
T ss_pred ceeeecccCC-------CCccceEEEeccCcccchhhheeecccccccch
Confidence 7776554332 234456777653 4678999999999887654
No 21
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=95.24 E-value=0.037 Score=47.67 Aligned_cols=54 Identities=31% Similarity=0.505 Sum_probs=35.9
Q ss_pred cCCCEEEEEEcCC---CceEEEEEEeecccccccCCCEEEEEEeecCC--------eeeecCCCcccCCcc
Q 002576 697 KKGEIVLAQFSAD---NSWNRAMIVNAPREKVESVNDKFEVFYIDYGN--------QELVPYNKLRPIDPS 756 (906)
Q Consensus 697 ~~G~lcaA~fs~D---~~WYRA~Vv~~~~~~~~~~~~~v~V~fIDYGn--------~e~V~~s~Lr~Lp~~ 756 (906)
++|+.|-+...++ +.||+|.|++.. ...++.|.|.|+-+ .+.|+...|||.|+.
T Consensus 2 ~~G~~VEV~s~e~g~~gaWf~a~V~~~~------~~~~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP~pP~ 66 (68)
T PF05641_consen 2 KKGDEVEVSSDEDGFRGAWFPATVLKEN------GDDKYLVEYDDLPDEDGESPPLKEWVDARRIRPCPPP 66 (68)
T ss_dssp -TT-EEEEEE-SBTT--EEEEEEEEEEE------TT-EEEEEETT-SS--------EEEEEGGGEEE----
T ss_pred CCCCEEEEEEcCCCCCcEEEEEEEEEeC------CCcEEEEEECCcccccccccccEEEechheEECcCcC
Confidence 5788888876554 469999999985 33499999976653 578999999999874
No 22
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=92.17 E-value=0.36 Score=39.74 Aligned_cols=51 Identities=27% Similarity=0.582 Sum_probs=39.7
Q ss_pred cCCCEEEEEEcCCCceEEEEEEeecccccccCCCEEEEEEeecCCe--eeecCCCcc
Q 002576 697 KKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQ--ELVPYNKLR 751 (906)
Q Consensus 697 ~~G~lcaA~fs~D~~WYRA~Vv~~~~~~~~~~~~~v~V~fIDYGn~--e~V~~s~Lr 751 (906)
++|+.|.+.+ .++.||.|+|+++.. ..+...+-|.|..+..+ +.|+.++|+
T Consensus 2 ~vG~~v~~~~-~~~~~y~A~I~~~r~---~~~~~~YyVHY~g~nkR~DeWV~~~~i~ 54 (55)
T PF11717_consen 2 EVGEKVLCKY-KDGQWYEAKILDIRE---KNGEPEYYVHYQGWNKRLDEWVPESRIR 54 (55)
T ss_dssp -TTEEEEEEE-TTTEEEEEEEEEEEE---CTTCEEEEEEETTSTGCC-EEEETTTEE
T ss_pred CcCCEEEEEE-CCCcEEEEEEEEEEe---cCCCEEEEEEcCCCCCCceeeecHHHcc
Confidence 5799999998 689999999999852 11345789999988775 678888775
No 23
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=90.52 E-value=0.78 Score=44.38 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=51.1
Q ss_pred CCEEEEEEcCCCceEEEEEEeecccccccCCCEEEEEEeecCCeeeecCCCcccCCccccCcccccceeeecc
Q 002576 699 GEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAY 771 (906)
Q Consensus 699 G~lcaA~fs~D~~WYRA~Vv~~~~~~~~~~~~~v~V~fIDYGn~e~V~~s~Lr~Lp~~f~~lP~qAi~c~La~ 771 (906)
|+-|+|+...||-||||.|.+.. ..+.+.|.| |.|....|+..++-++.... .-|-+.=-+.|+-
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~------~~~~~lV~f-~~~~~~~v~~~~iI~~~~~~-~~~L~~GD~VLA~ 65 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV------SSGQFLVEF-DDGDTQEVPISDIIALSDAM-RHSLQVGDKVLAP 65 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc------CCCEEEEEE-CCCCEEEeChHHeEEccCcc-cCcCCCCCEEEEe
Confidence 67899999999999999999985 678889988 88999999998887776543 4444444555554
No 24
>KOG4327 consensus mRNA splicing protein SMN (survival motor neuron) [RNA processing and modification]
Probab=90.22 E-value=0.18 Score=51.34 Aligned_cols=54 Identities=28% Similarity=0.293 Sum_probs=45.7
Q ss_pred CCCcCCCEEEEEEcCCCceEEEEEEeecccccccCCCEEEEEEeecCCeeeecCCCccc
Q 002576 694 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRP 752 (906)
Q Consensus 694 ~~p~~G~lcaA~fs~D~~WYRA~Vv~~~~~~~~~~~~~v~V~fIDYGn~e~V~~s~Lr~ 752 (906)
...++|+.|.|.|+++++.|=|.|..+.- ..+...|.|+=|||.+.|.+++|-+
T Consensus 66 ~~wKVgdkc~A~Y~e~g~~ypatidsi~~-----~~~tcvv~ylgygnr~Ev~lsDLl~ 119 (218)
T KOG4327|consen 66 QQWKVGDKCSAIYSEDGCIYPATIDSIDF-----KRETCVVVYLGYGNREEVNLSDLLS 119 (218)
T ss_pred hhheecceeeeeeecCcccccceeccccc-----ccCceEEEEEeecchhhhhHHHhcc
Confidence 56889999999999999999999988852 3455559999999999999888754
No 25
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=90.06 E-value=0.4 Score=50.34 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=50.1
Q ss_pred CCcCCCEEEEEEcCCCceEEEEEEeecccccccCCCEEEEEEeecCCeeeecCCCcccCCc
Q 002576 695 NPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDP 755 (906)
Q Consensus 695 ~p~~G~lcaA~fs~D~~WYRA~Vv~~~~~~~~~~~~~v~V~fIDYGn~e~V~~s~Lr~Lp~ 755 (906)
...+|+-|.|.|++|+.||=|.|-.+.. ....+.|.|--||+...++..+||..+.
T Consensus 90 ~w~vg~K~~A~~~ddg~~y~AtIe~ita-----~~~~~ai~f~s~~~a~~t~~a~lr~~e~ 145 (262)
T KOG3026|consen 90 GWKVGDKVQAVFSDDGQIYDATIEHITA-----MEGTVAIIFASYGTAPSTYAARLRSPEE 145 (262)
T ss_pred ccccCCEEEEeecCCCceEEeehhhccC-----CCCceeEEEeeccccccccHhhccCcch
Confidence 6889999999999999999999999842 3688999999999999999999998764
No 26
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=89.89 E-value=0.68 Score=44.80 Aligned_cols=105 Identities=18% Similarity=0.334 Sum_probs=70.9
Q ss_pred CCcEEEEEEEEEecCCeEEEEecCcHHHHHHHHHHHHHHccCCCCCCCCCCcCCCEEEEEEcCCC-ceEEEEEEeecccc
Q 002576 646 QKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADN-SWNRAMIVNAPREK 724 (906)
Q Consensus 646 ~~~~~~V~VT~V~sp~~FyvQ~~~~~~le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~-~WYRA~Vv~~~~~~ 724 (906)
.|-++..+|....+.++|.|+..+...-......+-... ... ...+++||.|+|+...++ .|+-|+|+..+...
T Consensus 11 DG~YY~GtV~~~~~~~~~lV~f~~~~~~~v~~~~iI~~~----~~~-~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~~~ 85 (124)
T PF15057_consen 11 DGFYYPGTVKKCVSSGQFLVEFDDGDTQEVPISDIIALS----DAM-RHSLQVGDKVLAPWEPDDCRYGPGTVIAGPERR 85 (124)
T ss_pred CCcEEeEEEEEccCCCEEEEEECCCCEEEeChHHeEEcc----Ccc-cCcCCCCCEEEEecCcCCCEEeCEEEEECcccc
Confidence 467888899888899999999954311000111111111 111 246889999999975443 58899999743211
Q ss_pred cccCCCEEEEEEeecCCeeeecCCCcccCCccc
Q 002576 725 VESVNDKFEVFYIDYGNQELVPYNKLRPIDPSL 757 (906)
Q Consensus 725 ~~~~~~~v~V~fIDYGn~e~V~~s~Lr~Lp~~f 757 (906)
...+..+.|.|.| |....|+...++.||+.+
T Consensus 86 -~~~~~~~~V~f~n-g~~~~vp~~~~~~I~~~~ 116 (124)
T PF15057_consen 86 -ASEDKEYTVRFYN-GKTAKVPRGEVIWISPSY 116 (124)
T ss_pred -ccCCceEEEEEEC-CCCCccchhhEEECCHHH
Confidence 1267899999998 778899999999998753
No 27
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only]
Probab=85.37 E-value=2.9 Score=44.78 Aligned_cols=149 Identities=17% Similarity=0.185 Sum_probs=81.2
Q ss_pred CccHHHHHHHcCCeEEeeccCCCCCCchHHHHHHH-HHHHhhcccccccccccccc---cCCc----------c------
Q 002576 582 RTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAE-KSAKSQKLKIWENYVEGEEV---SNGA----------A------ 641 (906)
Q Consensus 582 ~~nia~~LVe~GLA~v~~~~s~~~~~~~~~L~~AE-~~AK~~k~giW~~~~~~~~~---~~~~----------~------ 641 (906)
..++++.|+.++.++.. .. ....+..+...| .+++...+.+|......... +..+ .
T Consensus 64 ~~~v~e~l~~~~~~~~~--~~--~~~~~~r~~~~el~k~~~~~lp~~~~~~~~~p~~~gaip~~~~~~~~~gd~VAa~v~ 139 (264)
T KOG3038|consen 64 EVNVSEILITQLDLGRP--EG--PTGQMRRGVLMELLKQKAMTLPLWIGKPGKPPPLCGAIPAQGDYVLLKGDEVAARVK 139 (264)
T ss_pred hHHHHHHHHHHHHhccc--CC--ccchhhhhhhhhHHhhhccccccccCCCCCCCcccccccccCCccccCCceeeeeee
Confidence 35677777777666541 11 122222222222 23566677888865432110 0000 0
Q ss_pred ccCCCCcEEEEEEEEEecCCeEEEEecCc--HHHHHHHH----HHHHHHccCCCCCCCCCCcCCCEEEEEEcCCCceEEE
Q 002576 642 VEGKQKEVLKVVVTEILGGGKFYVQQVGD--QKVASVQQ----QLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRA 715 (906)
Q Consensus 642 ~~~~~~~~~~V~VT~V~sp~~FyvQ~~~~--~~le~L~~----~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA 715 (906)
.....++++.+.|.++.+.+..=|...|. .+.+.+.. .|..+.....|. +.....+|.+|+|.|.+--+||||
T Consensus 140 ~~~~dg~WIlaeVv~~~~~~~ye~ev~D~Epk~d~~g~r~~~yklp~~~~~p~p~-p~~~fpp~~~VLA~YP~TTcFY~a 218 (264)
T KOG3038|consen 140 AVSEDGDWILAEVVKVSSETRYEFEVVDPEPKKDEVGNRGQLYKLPRWKLNPIPP-PTALFPPGTIVLAVYPGTTCFYKA 218 (264)
T ss_pred eccCCCCEEEEEEEEEecCCceEeEecCCCccccccccccceecccHhhcCCCCC-CccCCCCCCEEEEEcCCcceeeee
Confidence 01234678888888888776543444442 12222111 112222221111 234567899999999999999999
Q ss_pred EEEeecccccccCCCEEEEEEeec
Q 002576 716 MIVNAPREKVESVNDKFEVFYIDY 739 (906)
Q Consensus 716 ~Vv~~~~~~~~~~~~~v~V~fIDY 739 (906)
.|++-++ .....+.|+|.|-
T Consensus 219 iVh~tp~----d~s~~y~vlffD~ 238 (264)
T KOG3038|consen 219 IVHSTPR----DGSCDYYVLFFDD 238 (264)
T ss_pred EeecCCC----CCCCcceeeeecC
Confidence 9999864 2456788888884
No 28
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=62.54 E-value=13 Score=36.38 Aligned_cols=88 Identities=17% Similarity=0.311 Sum_probs=56.2
Q ss_pred CCcEEEEEEEEEecCC-eEEEEecCcHHHHHHHHHHHHHHcc--C-CCCC--------CCCCCcCCCEEEEEEcCCCceE
Q 002576 646 QKEVLKVVVTEILGGG-KFYVQQVGDQKVASVQQQLASLNLQ--E-APVI--------GAFNPKKGEIVLAQFSADNSWN 713 (906)
Q Consensus 646 ~~~~~~V~VT~V~sp~-~FyvQ~~~~~~le~L~~~L~~~~~~--~-~p~~--------~~~~p~~G~lcaA~fs~D~~WY 713 (906)
..+++.+.|..+.+.+ .+.|+..+... ..+.+... . .|++ ......+|..|+|.|.+--++|
T Consensus 16 ~~~WIla~Vv~~~~~~~rYeV~D~d~~~------~~~~~~~~~~~iIPLP~~~~~~~~~~~~f~~g~~VLAlYP~TT~FY 89 (130)
T PF07039_consen 16 EEEWILAEVVKYNSDGNRYEVEDPDPEE------EKKRYKLSRKQIIPLPKKAPPDTDPLAEFPKGTKVLALYPDTTCFY 89 (130)
T ss_dssp TCEEEEEEEEEEETTTTEEEEEETTTCT------TTEEEEEEGGGEEEE-SB--TTT-GGGS--TT-EEEEE-TTSSEEE
T ss_pred CCCEEEEEEEEEeCCCCEEEEecCCCCC------CCceEEeCHHHEEECCCccCCCCCchhhCCCCCEEEEECCCCceEE
Confidence 3678889898888766 89999987421 00111111 0 1111 1235678999999999888999
Q ss_pred EEEEEeecccccccCCCEEEEEEeecCCee
Q 002576 714 RAMIVNAPREKVESVNDKFEVFYIDYGNQE 743 (906)
Q Consensus 714 RA~Vv~~~~~~~~~~~~~v~V~fIDYGn~e 743 (906)
||.|...+. ...+.+.+.|-|-....
T Consensus 90 ~A~V~~~p~----~~~~~y~l~Fedd~~~~ 115 (130)
T PF07039_consen 90 PATVVSPPK----KKSGEYKLKFEDDEDAD 115 (130)
T ss_dssp EEEEEEE-S----STTS-EEEEECTTTSTT
T ss_pred EEEEEeCCC----CCCCcEEEEEeCCCCcC
Confidence 999998842 25688999999988864
No 29
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=57.52 E-value=18 Score=32.35 Aligned_cols=62 Identities=21% Similarity=0.442 Sum_probs=47.2
Q ss_pred cCCCEEEEEEcCCCceEEEEEEeeccccc----ccCCCEEEEEEeecCCeeeecCCCcccCCccccC
Q 002576 697 KKGEIVLAQFSADNSWNRAMIVNAPREKV----ESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSS 759 (906)
Q Consensus 697 ~~G~lcaA~fs~D~~WYRA~Vv~~~~~~~----~~~~~~v~V~fIDYGn~e~V~~s~Lr~Lp~~f~~ 759 (906)
++|++|-|+.. .--|.-|+|++...... ....+.+.|+|.+-.....|+.++|.++...+..
T Consensus 2 ~~GdlVwaK~~-g~pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~~wv~~~~l~pf~~~~~~ 67 (87)
T cd05162 2 RPGDLVWAKMK-GYPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFGDKTFAWVGAERLKPFTEHKES 67 (87)
T ss_pred CCCCEEEEeCC-CCCCCCEEEccccccchhhhccCCCCEEEEEEeCCCcEEEeCccceeeccchHHh
Confidence 57999999984 44799999998742000 0124789999999888889999999999877644
No 30
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=52.26 E-value=29 Score=29.22 Aligned_cols=56 Identities=21% Similarity=0.458 Sum_probs=42.4
Q ss_pred cCCCEEEEEEcCCCceEEEEEEeeccc-----ccccCCCEEEEEEeecCCeeeecCCCcccC
Q 002576 697 KKGEIVLAQFSADNSWNRAMIVNAPRE-----KVESVNDKFEVFYIDYGNQELVPYNKLRPI 753 (906)
Q Consensus 697 ~~G~lcaA~fs~D~~WYRA~Vv~~~~~-----~~~~~~~~v~V~fIDYGn~e~V~~s~Lr~L 753 (906)
++|++|-|+.. .--|.-|+|+..... ........+.|+|..-.+...|+.++|.+|
T Consensus 2 ~~GdlVwaK~~-G~p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~awv~~~~l~p~ 62 (63)
T smart00293 2 KPGDLVWAKMK-GFPWWPALVVSPKETPDNIRKRKRFENLYPVLFFGDKDTAWISSSKLFPL 62 (63)
T ss_pred CCCCEEEEECC-CCCCCCeEEcCcccCChhHhhccCCCCEEEEEEeCCCCEEEECccceeeC
Confidence 57999999983 446999999876420 001235789999999888888999999876
No 31
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=50.49 E-value=26 Score=41.00 Aligned_cols=58 Identities=16% Similarity=0.347 Sum_probs=43.4
Q ss_pred CCCcCCCEEEEEEcCCCceEEEEEEeeccccc-ccCCCEEEEEEeecCCe--eeecCCCcc
Q 002576 694 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKV-ESVNDKFEVFYIDYGNQ--ELVPYNKLR 751 (906)
Q Consensus 694 ~~p~~G~lcaA~fs~D~~WYRA~Vv~~~~~~~-~~~~~~v~V~fIDYGn~--e~V~~s~Lr 751 (906)
....+|+.|.|+...|+.||.|+|+++..... ......+=|.|+.+=.+ +.|+.++|.
T Consensus 52 ~~~~VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~nrRlDEWV~~~rLd 112 (450)
T PLN00104 52 LPLEVGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYTEFNRRLDEWVKLEQLD 112 (450)
T ss_pred ceeccCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEecCCccHhhccCHhhcc
Confidence 34679999999998899999999999853110 00124688999987777 788877774
No 32
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=49.67 E-value=27 Score=31.39 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=47.5
Q ss_pred CcCCCEEEEEEcCCCceEEEEEEeecccccccCCCEEEEEEeecCCeeeecCCCcccCCccc
Q 002576 696 PKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSL 757 (906)
Q Consensus 696 p~~G~lcaA~fs~D~~WYRA~Vv~~~~~~~~~~~~~v~V~fIDYGn~e~V~~s~Lr~Lp~~f 757 (906)
.++||+|-|+.. .--|.=|+|++.... ....+.+.|+|...+....|+.++|.++.+.+
T Consensus 3 f~~GdlVwaK~k-Gyp~WPa~I~~~~~~--~~~~~~~~V~FfGt~~~a~v~~~~l~pf~~~~ 61 (83)
T cd05834 3 FKAGDLVFAKVK-GYPAWPARVDEPEDW--KPPGKKYPVYFFGTHETAFLKPEDLFPYTENK 61 (83)
T ss_pred CCCCCEEEEecC-CCCCCCEEEeccccc--CCCCCEEEEEEeCCCCEeEECHHHceecccch
Confidence 568999999983 456889999987421 12368999999999999999999999998754
No 33
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=49.41 E-value=28 Score=31.32 Aligned_cols=55 Identities=16% Similarity=0.358 Sum_probs=45.7
Q ss_pred CCcCCCEEEEEEcCCCceEEEEEEeecccccccCCCEEEEEEee-cCCeeeecCCCcccCCccc
Q 002576 695 NPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYID-YGNQELVPYNKLRPIDPSL 757 (906)
Q Consensus 695 ~p~~G~lcaA~fs~D~~WYRA~Vv~~~~~~~~~~~~~v~V~fID-YGn~e~V~~s~Lr~Lp~~f 757 (906)
+-++|++|-|+.. .=-|.=|+|++. .++.+.|+|.. -.++..|+.++|.++...+
T Consensus 6 c~~p~dLVwAK~k-Gyp~WPAkV~~~-------~~~~~~V~FFG~t~~~a~v~~~~i~~~~~~~ 61 (83)
T cd05841 6 CRPPHELVWAKLK-GFPYWPAKVMRV-------EDNQVDVRFFGGQHDRAWIPSNNIQPISTEI 61 (83)
T ss_pred cCCCCCEEEEeCC-CCCCCCEEEeec-------CCCeEEEEEcCCCCCeEEEehHHeeehhhhh
Confidence 4568999999973 335888999986 57899999988 8889999999999997754
No 34
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=42.34 E-value=62 Score=31.15 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=34.8
Q ss_pred CCCEEEEEEcCCCceEEEEEEeecccccccCCCEEEEEEeecCCeeeecCCCccc
Q 002576 698 KGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRP 752 (906)
Q Consensus 698 ~G~lcaA~fs~D~~WYRA~Vv~~~~~~~~~~~~~v~V~fIDYGn~e~V~~s~Lr~ 752 (906)
+|--|.|++|.++-||=++|+.- + .+.++.|.|=| |....|..++|-.
T Consensus 5 iG~rV~AkWS~n~yyY~G~I~~~-~-----~~~kykv~FdD-G~~~~v~~~div~ 52 (122)
T PF09038_consen 5 IGLRVFAKWSDNGYYYPGKITSD-K-----GKNKYKVLFDD-GYECRVLGKDIVV 52 (122)
T ss_dssp TT-EEEEESSTTSEEEEEEEEEE-E-----TTTEEEEEETT-S-EEEEECCCEEE
T ss_pred cccEEEEEEccCCcccCceEeec-C-----CCCeEEEEecC-CccceeccCcEEE
Confidence 68899999995556689988874 3 78999999876 7766666666543
No 35
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only]
Probab=34.13 E-value=1.1e+02 Score=33.17 Aligned_cols=58 Identities=24% Similarity=0.348 Sum_probs=41.7
Q ss_pred CCCCCcCCCEEEEEE---cCCCceEEEEEEeecccccccCCCEEEEEEeecCC--eeeecCCCcccCCc
Q 002576 692 GAFNPKKGEIVLAQF---SADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGN--QELVPYNKLRPIDP 755 (906)
Q Consensus 692 ~~~~p~~G~lcaA~f---s~D~~WYRA~Vv~~~~~~~~~~~~~v~V~fIDYGn--~e~V~~s~Lr~Lp~ 755 (906)
+.+.+.+|+-++|++ ++|+.|.=|.|+.+. ....+++.-+|==- .+.-...+|.+||.
T Consensus 124 ~~~~~~~gd~VAa~v~~~~~dg~WIlaeVv~~~------~~~~ye~ev~D~Epk~d~~g~r~~~yklp~ 186 (264)
T KOG3038|consen 124 GDYVLLKGDEVAARVKAVSEDGDWILAEVVKVS------SETRYEFEVVDPEPKKDEVGNRGQLYKLPR 186 (264)
T ss_pred CCccccCCceeeeeeeeccCCCCEEEEEEEEEe------cCCceEeEecCCCccccccccccceecccH
Confidence 347788999999998 468889999999985 34447777776533 34445556666654
No 36
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=33.42 E-value=1.2e+02 Score=29.68 Aligned_cols=54 Identities=19% Similarity=0.296 Sum_probs=41.7
Q ss_pred cCCCEEEEEEc---CCCceEEEEEEeecccccccCCCEEEEEEeecC---CeeeecCCCcccCCc
Q 002576 697 KKGEIVLAQFS---ADNSWNRAMIVNAPREKVESVNDKFEVFYIDYG---NQELVPYNKLRPIDP 755 (906)
Q Consensus 697 ~~G~lcaA~fs---~D~~WYRA~Vv~~~~~~~~~~~~~v~V~fIDYG---n~e~V~~s~Lr~Lp~ 755 (906)
++|+.|||+.. .++.|-=|+|++... ..++|+|.=+|-+ +.-.++.++|-+||.
T Consensus 1 q~G~~VAak~~~~~~~~~WIla~Vv~~~~-----~~~rYeV~D~d~~~~~~~~~~~~~~iIPLP~ 60 (130)
T PF07039_consen 1 QPGDQVAAKVKQGNEEEEWILAEVVKYNS-----DGNRYEVEDPDPEEEKKRYKLSRKQIIPLPK 60 (130)
T ss_dssp -TT-EEEEEECTTTTTCEEEEEEEEEEET-----TTTEEEEEETTTCTTTEEEEEEGGGEEEE-S
T ss_pred CCCCEEEEEcCCCCCCCCEEEEEEEEEeC-----CCCEEEEecCCCCCCCceEEeCHHHEEECCC
Confidence 47999999874 456799999999863 4569999999997 355678888888887
No 37
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=33.16 E-value=1.3e+02 Score=26.57 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=43.7
Q ss_pred CCcCCCEEEEEEcC------CCceEEEEEEeecccccccC-CCEEEEEEeecCCeeeecCCCcccC
Q 002576 695 NPKKGEIVLAQFSA------DNSWNRAMIVNAPREKVESV-NDKFEVFYIDYGNQELVPYNKLRPI 753 (906)
Q Consensus 695 ~p~~G~lcaA~fs~------D~~WYRA~Vv~~~~~~~~~~-~~~v~V~fIDYGn~e~V~~s~Lr~L 753 (906)
..+.|++++++-.. ++.|+=|.|+...-+..... ...++|--||-|....|....+..+
T Consensus 5 ~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi~~~ggaR~P~~~tlFQVadVDtG~I~wVnaD~Vt~I 70 (75)
T PF11302_consen 5 SVKPGDTVIVQDEQEVGQKQDKDWWMGQVIHCEGGARDPKVPTLFQVADVDTGVIRWVNADEVTHI 70 (75)
T ss_pred ccCCCCEEEEecCccccccCCCCcEEEEEEEEeccccCCCCCceEEEEEccCCeEEEEEchheeee
Confidence 47899999998754 46799999998743222222 3458999999999999987765544
No 38
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=29.53 E-value=1.3e+02 Score=26.33 Aligned_cols=58 Identities=16% Similarity=0.342 Sum_probs=44.7
Q ss_pred cCCCEEEEEEcCCCceEEEEEEeeccc-ccccCCCEEEEEEeecCCeeeecCCCcccCCc
Q 002576 697 KKGEIVLAQFSADNSWNRAMIVNAPRE-KVESVNDKFEVFYIDYGNQELVPYNKLRPIDP 755 (906)
Q Consensus 697 ~~G~lcaA~fs~D~~WYRA~Vv~~~~~-~~~~~~~~v~V~fIDYGn~e~V~~s~Lr~Lp~ 755 (906)
++|++|-|+.. .--|.=|+|+..... ......+.+.|+|.+-.+...|+.++|.++..
T Consensus 2 ~~GdlVWaK~~-g~pwWPa~V~~~~~~~~~~~~~~~~~V~Ffg~~~~~wv~~~~i~~f~~ 60 (86)
T PF00855_consen 2 RPGDLVWAKLK-GYPWWPARVCDPDEKSKKKRKDGHVLVRFFGDNDYAWVKPSNIKPFSE 60 (86)
T ss_dssp STTEEEEEEET-TSEEEEEEEEECCHCTSCSSSSTEEEEEETTTTEEEEEEGGGEEECCH
T ss_pred CCCCEEEEEeC-CCCCCceEEeecccccccCCCCCEEEEEecCCCCEEEECHHHhhChhh
Confidence 57999999993 556999999987410 01225688999999888888899999998873
No 39
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=28.66 E-value=1.2e+02 Score=27.22 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=41.4
Q ss_pred cCCCEEEEEEcCCCceEEEEEEeecccccccCCCEEEEEEeecC-CeeeecCCCcccCCccc
Q 002576 697 KKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYG-NQELVPYNKLRPIDPSL 757 (906)
Q Consensus 697 ~~G~lcaA~fs~D~~WYRA~Vv~~~~~~~~~~~~~v~V~fIDYG-n~e~V~~s~Lr~Lp~~f 757 (906)
.+|++|-|++. .--|.=|+|.++.+ ...++.|+|+.-+ ....+..++|.+-.+.|
T Consensus 2 ~~gdlVWaK~~-g~P~WPa~I~~~~~-----~~~k~~V~FfG~~~~~a~~~~~~l~p~~~~~ 57 (80)
T cd06080 2 EKNDLVWAKIQ-GYPWWPAVIKSISR-----KKQKARVNFIGDNMQSEKKGIRVVKRWLKHF 57 (80)
T ss_pred CCCCEEEEeCC-CCCCCCEEEeeecC-----CCCEEEEEEeCCCCceeccchhhcccccccH
Confidence 57999999984 34588899998853 5789999999888 66777777776655444
No 40
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=26.29 E-value=1.9e+02 Score=22.31 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=30.0
Q ss_pred EEEEEcCCCceEEEEEEeecccccccCCCEEEEEEeecCCeeeecCC
Q 002576 702 VLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYN 748 (906)
Q Consensus 702 caA~fs~D~~WYRA~Vv~~~~~~~~~~~~~v~V~fIDYGn~e~V~~s 748 (906)
|=+.- ....|-.|.|++. .++++.|...| |...+|+.+
T Consensus 4 vWvpD-~~egfv~g~I~~~-------~g~~vtV~~~~-G~~~tv~~d 41 (42)
T PF02736_consen 4 VWVPD-PKEGFVKGEIIEE-------EGDKVTVKTED-GKEVTVKKD 41 (42)
T ss_dssp EEEEE-SSSSEEEEEEEEE-------ESSEEEEEETT-TEEEEEEGG
T ss_pred EEEeC-CcccEEEEEEEEE-------cCCEEEEEECC-CCEEEeCCC
Confidence 44443 3567999999987 68999999999 998888754
No 41
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=26.18 E-value=1.4e+02 Score=27.23 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=24.8
Q ss_pred ceeEEEEEEecCCEEEEEEcCCCeEEEEEEee
Q 002576 73 PMQGIVEQARDGSTLRVYLLPEFQFVQVFVAG 104 (906)
Q Consensus 73 ~~~~~Ve~V~DGdt~~v~l~~~~~~~~v~laG 104 (906)
.++|+|+.+.-++.|+|.|. ++..+.-+++|
T Consensus 8 e~~G~V~e~Lp~~~frV~Le-nG~~vla~isG 38 (87)
T PRK12442 8 ELDGIVDEVLPDSRFRVTLE-NGVEVGAYASG 38 (87)
T ss_pred EEEEEEEEECCCCEEEEEeC-CCCEEEEEecc
Confidence 46899999999999999985 56666666655
No 42
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=25.55 E-value=4e+02 Score=29.26 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=47.3
Q ss_pred CCCcCCCEEEEEEcCCCceEEEEEEeecccccccCCCEEEEEEeecCCee-eecCCCcccCCccccCcccccceeeecce
Q 002576 694 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQE-LVPYNKLRPIDPSLSSTPPLAQLCSLAYI 772 (906)
Q Consensus 694 ~~p~~G~lcaA~fs~D~~WYRA~Vv~~~~~~~~~~~~~v~V~fIDYGn~e-~V~~s~Lr~Lp~~f~~lP~qAi~c~La~V 772 (906)
.-|..|+++++. |.++ .+--+-|.+--||+.+ .|+++.+
T Consensus 7 ~~PeeGEiVv~t-----------V~~V-------~~~GAyv~L~EY~g~Eg~ihiSEv---------------------- 46 (269)
T COG1093 7 EYPEEGEIVVGT-----------VKQV-------ADYGAYVELDEYPGKEGFIHISEV---------------------- 46 (269)
T ss_pred CCCCCCcEEEEE-----------EEEe-------eccccEEEeeccCCeeeeEEHHHH----------------------
Confidence 348899999987 6666 3445667777788765 3333322
Q ss_pred ecCCCCCCCcHHHHHHHhhccccCCCEEEEEEEEEeCC
Q 002576 773 KIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSS 810 (906)
Q Consensus 773 ~p~~~~~~w~~eA~~~l~~~llv~gk~l~a~V~~~~~~ 810 (906)
...|-....++++. |+..+|+|..+++.
T Consensus 47 -----as~wVknIrd~vke-----gqkvV~kVlrVd~~ 74 (269)
T COG1093 47 -----ASGWVKNIRDYVKE-----GQKVVAKVLRVDPK 74 (269)
T ss_pred -----HHHHHHHHHHHhhc-----CCeEEEEEEEEcCC
Confidence 34687777777777 89999999998853
No 43
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=24.51 E-value=1.6e+02 Score=25.54 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=24.8
Q ss_pred ceeEEEEEEecCCEEEEEEcCCCeEEEEEEee
Q 002576 73 PMQGIVEQARDGSTLRVYLLPEFQFVQVFVAG 104 (906)
Q Consensus 73 ~~~~~Ve~V~DGdt~~v~l~~~~~~~~v~laG 104 (906)
.+.|+|+.+.-++.|+|.|. ++..+.-+++|
T Consensus 6 e~~G~V~e~L~~~~f~V~l~-ng~~vla~i~G 36 (68)
T TIGR00008 6 EMEGKVTESLPNAMFRVELE-NGHEVLAHISG 36 (68)
T ss_pred EEEEEEEEECCCCEEEEEEC-CCCEEEEEecC
Confidence 46899999999999999985 56666666655
No 44
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=23.01 E-value=1.3e+02 Score=24.79 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=31.5
Q ss_pred cceeeEEEEEEEeCCEEEEecCCCCCCCCCcceEEEEeeccCCC
Q 002576 263 DQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPK 306 (906)
Q Consensus 263 ~~~~~~~V~~V~~gD~i~v~~~~~~~~~~~~~~~v~l~~i~~P~ 306 (906)
+..+.|+|++|..++...|...+.. .+.+..+..+.||...
T Consensus 17 ~~W~~a~V~~~~~~~~~~V~~~~~~---~~~~e~v~~~~LRp~~ 57 (61)
T smart00743 17 DSWWEAVVTKVLGDGKYLVRYLTES---EPLKETVDWSDLRPHP 57 (61)
T ss_pred CEEEEEEEEEECCCCEEEEEECCCC---cccEEEEeHHHcccCC
Confidence 4578999999999899999997621 2347888888888643
No 45
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=21.05 E-value=1.2e+02 Score=23.42 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=27.5
Q ss_pred cceeeEEEEEEEeCCEEEEecCCCCCCCCCcceEEEEeecc
Q 002576 263 DQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIR 303 (906)
Q Consensus 263 ~~~~~~~V~~V~~gD~i~v~~~~~~~~~~~~~~~v~l~~i~ 303 (906)
++.++|+|+++..++.+.|...+ ||+ ...|.+..|+
T Consensus 12 ~~wyra~V~~~~~~~~~~V~f~D--yG~---~~~v~~~~l~ 47 (48)
T cd04508 12 GKWYRAKITSILSDGKVEVFFVD--YGN---TEVVPLSDLR 47 (48)
T ss_pred CeEEEEEEEEECCCCcEEEEEEc--CCC---cEEEeHHHcC
Confidence 46789999999988888888754 454 5667777665
No 46
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=20.48 E-value=2e+02 Score=25.56 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=24.2
Q ss_pred CceeEEEEEEecCCEEEEEEcCCCeEEEEEEee
Q 002576 72 RPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAG 104 (906)
Q Consensus 72 ~~~~~~Ve~V~DGdt~~v~l~~~~~~~~v~laG 104 (906)
-.+.|+|+.+.-|++|+|.+. ++..+.=++.|
T Consensus 7 ~e~~g~V~e~L~~~~f~v~~e-dg~~~~ahI~G 38 (75)
T COG0361 7 IEMEGTVIEMLPNGRFRVELE-NGHERLAHISG 38 (75)
T ss_pred cEEEEEEEEecCCCEEEEEec-CCcEEEEEccC
Confidence 357899999999999999975 56555545543
Done!