Query 002576
Match_columns 906
No_of_seqs 418 out of 2667
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 16:02:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002576.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1295-1299//hhsearch_pdb/002576hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bdl_A Staphylococcal nuclease 1.0 1 1 750.9 55.0 525 263-876 22-570 (570)
2 3bdl_A Staphylococcal nuclease 1.0 1 1 403.4 39.4 439 70-621 21-569 (570)
3 2hqx_A P100 CO-activator tudor 1.0 1 1 355.7 9.7 229 644-896 13-244 (246)
4 2wac_A CG7008-PA; unknown func 1.0 1 1 327.0 23.4 215 647-885 2-218 (218)
5 4b9x_A TDRD1, tudor domain-con 1.0 1 1 287.1 23.2 187 643-852 12-203 (226)
6 4b9w_A TDRD1, tudor domain-con 1.0 1 1 282.7 24.0 184 643-849 12-200 (201)
7 3ntk_A Maternal protein tudor; 1.0 1 1 247.3 16.7 165 648-841 2-167 (169)
8 4eqp_A Thermonuclease; staphyl 1.0 1 1 179.2 14.5 131 71-256 7-142 (143)
9 2diq_A Tudor and KH domain-con 1.0 1 1 173.4 8.6 100 670-777 9-108 (110)
10 3fdr_A Tudor and KH domain-con 1.0 1 1 163.8 10.5 91 670-768 4-94 (94)
No 1
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=750.92 Aligned_cols=525 Identities=37% Similarity=0.587 Sum_probs=454.3
Q ss_pred CCEEEEEEEEEEECCEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCC-CC-------CCCHHHHHHHHHHHHHCCCC
Q ss_conf 55146999999839899996499888899851699972036899899999-98-------87034999999998530895
Q 002576 263 DQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRK-DE-------KPAAYAREAREFLRTRLIGR 334 (906)
Q Consensus 263 ~~~~~~~V~~V~~gD~i~v~~~~~~~~~~~~e~~v~L~si~~P~~~~~~~-~~-------~~~~~~~eare~Lr~~liGk 334 (906)
.+.|+|+|++|+|||||+|...+ +.+++|+|++|++|++....+ +. .++|||++||||||++|+||
T Consensus 22 ~~~~~~~V~~V~DGDTi~v~~~~------g~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~~~l~gk 95 (570)
T 3bdl_A 22 DKQFVAKVMQVLNADAIVVKLNS------GDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGK 95 (570)
T ss_dssp CSEEEEEEEEEETTTEEEEECTT------SCEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEEEECCCCEEEEECCC------CCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 75799999999259889998799------978999998874887677777655544567666455899999999985898
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHH
Q ss_conf 79999978652111244333368999999999997776556899987666765442024899996288889899702332
Q 002576 335 QVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVA 414 (906)
Q Consensus 335 ~v~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 414 (906)
+|.+.++|.++.... + +. ++. ++ .|.+++|++
T Consensus 96 ~V~~~~~~~~~~~~~-----~---~~--~D~---------------------yg--~R~la~v~~--------------- 127 (570)
T 3bdl_A 96 KVNVTVDYIRPASPA-----T---ET--VPA---------------------FS--ERTCATVTI--------------- 127 (570)
T ss_dssp EEEEEEEEEESSCCC-----S---SC--SSS---------------------SC--CEEEEEEEE---------------
T ss_pred EEEEEEEEECCCCCC-----C---CC--CCC---------------------CC--CEEEEEECC---------------
T ss_conf 799999863146555-----5---65--677---------------------78--469999700---------------
Q ss_pred HCCCCCCCCCCCHHHHHHHCCCEEEEEEC-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHCCCC
Q ss_conf 01358999976478999763756999806-85312237999999999999639887788999940234078630000000
Q 002576 415 QSNAAGQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARD 493 (906)
Q Consensus 415 ~~~~~~~~~~~nv~~~lv~~G~a~v~~~r-~~~~~s~~y~~l~~ae~~A~~~~~G~~~~~~~~~~~i~d~~~~~~~kak~ 493 (906)
+|.|||++||++|||+|++|| ++++++.+|+.|++||++|+++++|+|+.+++++.+++|++. +..++++
T Consensus 128 --------~g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~~~~~GlW~~~~~~~~~~~d~~~-~~~~~~~ 198 (570)
T 3bdl_A 128 --------GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADISG-DTQKAKQ 198 (570)
T ss_dssp --------TTEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHHHTTCGGGCCSCCCCCCCEECTT-CHHHHHH
T ss_pred --------CCCCHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCC-CHHHHHH
T ss_conf --------8852999998575879984057743247579999999999998379877899998661453587-6677999
Q ss_pred CCHHHHCCCCCCEEEEEEECCCEEEEEECCCCEEEEEEEECCCCCC----------CCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 0334321793268999993199999982688415999980236999----------898563999999999963953999
Q 002576 494 FLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPG----------RNERYSNEALLLMRQKILQRDVEI 563 (906)
Q Consensus 494 ~l~~l~~~~~~~~vVe~V~sGsr~~v~ip~e~~~I~~~LaGI~~P~----------~~e~ws~EA~~f~k~~llqR~V~V 563 (906)
|++++++++++.|+|++|.||+|++|++|+++..++++|+||+||+ ..++|+.+|+.|++.+|++|+|++
T Consensus 199 ~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIdaPe~~~~~~~~~~~~~~~g~eA~~~l~~~l~~r~V~~ 278 (570)
T 3bdl_A 199 FLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVEV 278 (570)
T ss_dssp HHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEECCCCCEEETTEEECCCTTHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHCCEEEEEEEEEECCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 87787418835699999968998999986999499999999989987787888766468499999999999866985999
Q ss_pred EEEEECCCCCEEEEEEECCCCHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CC
Q ss_conf 9999878996999999389537889988598687303589999755899999999885023444556664112478--65
Q 002576 564 EVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNG--AA 641 (906)
Q Consensus 564 ~V~~~dk~G~~ig~L~~~~~nia~~Lve~GLA~v~~~~s~~~~~~~~~L~~AE~~AK~~klgiW~~~~~~~~~~~~--~~ 641 (906)
++.+.|++|+++|++|+++.||+..||++|||+++ ++.....+...|..||..||+.++|||+.+.+...+... ..
T Consensus 279 ~~~~~D~ygR~la~v~~~~~~v~~~Lv~~GlA~~~--~~~~~~~~~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~~~~~~ 356 (570)
T 3bdl_A 279 EVESMDKAGNFIGWLHIDGANLSVLLVEHALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLE 356 (570)
T ss_dssp EEEEECTTSCEEEEEEETTEEHHHHHHHTTSSEEC--GGGTTSTTHHHHHHHHHHHHHHTCGGGC----------CCCCC
T ss_pred EEEEECCCCCEEEEEEECCEEHHHHHHHCCCCEEE--ECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCC
T ss_conf 99768588989999998998799999972991898--6177732699999999999983889776656541000022356
Q ss_pred CCCCCCCEEEEEEEEEECCCEEEEEECCC-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEE
Q ss_conf 45898739999999995198499996690-88999999999987038999788898679879999758994689999840
Q 002576 642 VEGKQKEVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNA 720 (906)
Q Consensus 642 ~~~~~~~~~~V~VT~V~sp~~FyvQ~~~~-~~le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~Vi~~ 720 (906)
...+..++++|+||+|.+|++||||..+. ..|+.||++|+.++.+..+++.++.|++|++|+|+|+ |+.||||+|+.+
T Consensus 357 ~~~~~~~~~~V~Vt~V~sp~~Fyvq~~~~~~~l~~l~~~l~~~~~~~~~l~~~~~~~~G~~c~a~~~-d~~wyRa~I~~v 435 (570)
T 3bdl_A 357 EKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEKV 435 (570)
T ss_dssp CSSCCCCCEEEEEEEECTTSEEEEEEGGGHHHHHHHHHHHHHHHHHSCCCTTCCCCCTTCEEEEECT-TSCEEEEEEEEE
T ss_pred CCCCCCCEEEEEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEC-CCCEEEEEEEEE
T ss_conf 6777886799999999779759999888378999999999998731888787767984978999987-997999999997
Q ss_pred CCCCCCCCCCEEEEEEEECCCEEEECCCCCCCCCCCCCCC--CCCCCEEEECCEECCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 5665335798899999525980231388822489444676--23342000031205999999919999999421234798
Q 002576 721 PREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSST--PPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSN 798 (906)
Q Consensus 721 ~~~~~~~~~~~v~V~fIDYGN~e~V~~s~Lr~Lp~~f~~l--P~qA~~c~La~V~pp~~~~~w~~eA~~~l~~~llv~gk 798 (906)
. ..+.+.|+||||||.+.|+.++||+||++|+.+ |+||++|+|++|+||. +.+|+.+|+++|++ ++.++
T Consensus 436 ~------~~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~l~lP~qA~~c~La~v~pp~-~~~w~~ea~~~f~~--lv~~k 506 (570)
T 3bdl_A 436 E------SPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQ-DDDARTDAVDSVVR--DIQNT 506 (570)
T ss_dssp E------ETTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCCEEEEETTEECCS-SHHHHHHHHHHHHH--HHTTE
T ss_pred C------CCCEEEEEEEECCCEEEEEHHHCCCCCHHHHCCCCCCCEEEEEECCEECCC-CCCCCHHHHHHHHH--HHCCC
T ss_conf 6------998599999947982998779873588899369998146899989769689-88873999999999--86898
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999089984357898617999999438988388899885983674124459600599999999999999870
Q 002576 799 EFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTA 876 (906)
Q Consensus 799 ~l~a~V~~~~~~~~~~~~~~~~~~~~VtL~d~~~~~sIn~~LV~~GlA~v~~~~~~~~~~~~~~~~~l~~aqe~Ak~~ 876 (906)
.|.++|.++.. +.++|+|+++++..|||+.||++|||+.++++. +.+++++++|+++|+.||++
T Consensus 507 ~l~~~V~~~~~-----------~~~~V~L~~~~~~~sIn~~Lv~~G~A~~~~~~~---~~~~~~~~~l~~~q~~Ak~~ 570 (570)
T 3bdl_A 507 QCLLNVEHLSA-----------GCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSA 570 (570)
T ss_dssp EEEEEEEECCS-----------SSCEEEEEETTTCCBHHHHHHHTTSSEECCCCS---GGGHHHHHHHHHHHHTC---
T ss_pred EEEEEEEEEEC-----------CCEEEEEEECCCCCCHHHHHHHCCCEECCHHHH---HHHHHHHHHHHHHHHHHHCC
T ss_conf 79999999958-----------917999997999850799998789818552011---44899999999999997409
No 2
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=403.39 Aligned_cols=439 Identities=20% Similarity=0.257 Sum_probs=312.3
Q ss_pred CCCCEEEEEEEEECCCEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 69953099999812998999982897079999832048998998986446864445787320000142126788652102
Q 002576 70 KGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTA 149 (906)
Q Consensus 70 k~~~~~~iVe~V~dG~t~rv~l~~~~~~i~v~laGI~~P~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 149 (906)
+.+.+.|.|.+|.|||||+|.. ..+...+|||+||||||+.+.+.. +... .
T Consensus 21 ~~~~~~~~V~~V~DGDTi~v~~-~~g~~~~VRL~gIdaPe~~~~~~~-------~~~~---------------------~ 71 (570)
T 3bdl_A 21 MDKQFVAKVMQVLNADAIVVKL-NSGDYKTIHLSSIRPPRLEGENTQ-------DKNK---------------------K 71 (570)
T ss_dssp CCSEEEEEEEEEETTTEEEEEC-TTSCEEEEEETTEECCCCTTSCCG-------GGTT---------------------T
T ss_pred CCCEEEEEEEEECCCCEEEEEC-CCCCEEEEEEEEECCCCCCCCCCC-------CCCC---------------------C
T ss_conf 7757999999992598899987-999789999988748876777776-------5554---------------------4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEE----------ECCCCC-CEEEEEEECCCCCHHHHHHHHHHCCCEEEE
Q ss_conf 379999874349999999997706986999991----------106999-689999937999968899999871856886
Q 002576 150 SAGQQSTDEPFALDAKYFTEMRVLNREVRIVLE----------GVDKFK-NLIGSVFYPDGETAKDLAMELVENGLAKYI 218 (906)
Q Consensus 150 ~~~~~~~~ep~a~eAk~f~e~rll~r~V~i~~~----------~~D~~g-~~~g~V~~~~g~~~~di~~~Ll~~GlA~~~ 218 (906)
. ...+.+|||.||+.|+..+|.++.|++.+. ..|+|| |++|+|+. +|.+ |+++||++|||+++
T Consensus 72 ~--~~~~~~p~g~eA~e~L~~~l~gk~V~~~~~~~~~~~~~~~~~D~yg~R~la~v~~-~g~~---v~~~lv~~G~A~v~ 145 (570)
T 3bdl_A 72 L--RPLYDIPYMFEAREFLRKKLIGKKVNVTVDYIRPASPATETVPAFSERTCATVTI-GGIN---IAEALVSKGLATVI 145 (570)
T ss_dssp C--CHHHHSTTHHHHHHHHHHHHTTCEEEEEEEEEESSCCCSSCSSSSCCEEEEEEEE-TTEE---HHHHHHHTTSSEEC
T ss_pred C--CCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEECC-CCCC---HHHHHHHCCCEEEE
T ss_conf 5--6766645589999999998589879999986314655556567778469999700-8852---99999857587998
Q ss_pred ECC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----C---C-------CCCCEEEEEEEEEEECCEEEE
Q ss_conf 333--2202089999999999999982553565458899995-----3---2-------345514699999983989999
Q 002576 219 EWS--ANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNS-----K---A-------IHDQNFTGKVVEVVSGDCIIV 281 (906)
Q Consensus 219 ~~~--~~~~~~~~~~~l~~aE~~Ak~~r~glW~~~~~~~~~~-----~---~-------~~~~~~~~~V~~V~~gD~i~v 281 (906)
... .......+ ..|.+||.+||++++|||+.-.+|.... . + ...+.+.|+|..|++||||.|
T Consensus 146 ~~~~~~~~~~~~~-~~l~~aE~~A~~~~~GlW~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~V~~V~DGDT~~v 224 (570)
T 3bdl_A 146 RYRQDDDQRSSHY-DELLAAEARAIKNGKGLHSKKEVPIHRVADISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKL 224 (570)
T ss_dssp CCSSTTSCCCTTH-HHHHHHHHHHHHTTCGGGCCSCCCCCCCEECTTCHHHHHHHHHHHHHTCEEEEEEEEESSSSEEEE
T ss_pred EECCCCCCCCHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCEEEEEEEEEECCCEEEE
T ss_conf 4057743247579-999999999998379877899998661453587667799987787418835699999968998999
Q ss_pred ECCCCCCCCCCCCEEEEEEECCCCCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 64998888998516999720368998999999--8870349999999985308957999997865211124433336899
Q 002576 282 ADDSIPYGNALAERRVNLSSIRCPKIGNPRKD--EKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKG 359 (906)
Q Consensus 282 ~~~~~~~~~~~~e~~v~L~si~~P~~~~~~~~--~~~~~~~~eare~Lr~~liGk~v~v~~~y~~~~~~~~~~~~~~~~~ 359 (906)
..+.. +...+|+|++|+||+...+..+ ...+||+.+|++||+++|.|+.|.+.++..
T Consensus 225 ~~~~~-----~~~~~vRL~GIdaPe~~~~~~~~~~~~~~~g~eA~~~l~~~l~~r~V~~~~~~~---------------- 283 (570)
T 3bdl_A 225 YLPKE-----TCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESM---------------- 283 (570)
T ss_dssp EETTT-----TEEEEEEESSEECCCCCEEETTEEECCCTTHHHHHHHHHHHHTTCEEEEEEEEE----------------
T ss_pred EECCC-----CCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEE----------------
T ss_conf 98699-----949999999998998778788876646849999999999986698599999768----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHCCCEEE
Q ss_conf 99999999977765568999876667654420248999962888898997023320135899997647899976375699
Q 002576 360 PAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNV 439 (906)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~lv~~G~a~v 439 (906)
+.| +|.+|+|++ +|.|||+.||++|||.+
T Consensus 284 ----D~y------------------------gR~la~v~~-----------------------~~~~v~~~Lv~~GlA~~ 312 (570)
T 3bdl_A 284 ----DKA------------------------GNFIGWLHI-----------------------DGANLSVLLVEHALSKV 312 (570)
T ss_dssp ----CTT------------------------SCEEEEEEE-----------------------TTEEHHHHHHHTTSSEE
T ss_pred ----CCC------------------------CCEEEEEEE-----------------------CCEEHHHHHHHCCCCEE
T ss_conf ----588------------------------989999998-----------------------99879999997299189
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC-------------------CEEEECCC---C-----C-HHCC
Q ss_conf 98068531223799999999999963988778899994-------------------02340786---3-----0-0000
Q 002576 440 INHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPV-------------------MHIQDLTM---A-----P-VKKA 491 (906)
Q Consensus 440 ~~~r~~~~~s~~y~~l~~ae~~A~~~~~G~~~~~~~~~-------------------~~i~d~~~---~-----~-~~ka 491 (906)
. +. ..++.++..|.+||..|+++++|+|+...++. ..|..+.. . + ...-
T Consensus 313 ~-~~--~~~~~~~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~~~~~~~~~~~~~~~~V~Vt~V~sp~~Fyvq~~~~~~~l 389 (570)
T 3bdl_A 313 H-FT--AERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQL 389 (570)
T ss_dssp C-GG--GTTSTTHHHHHHHHHHHHHHTCGGGC----------CCCCCCSSCCCCCEEEEEEEECTTSEEEEEEGGGHHHH
T ss_pred E-EC--CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEECCCHHHH
T ss_conf 8-61--77732699999999999983889776656541000022356677788679999999977975999988837899
Q ss_pred C-------CCCH------H-------------HHCCCCCCEEEEEEECCCEEEEEE-----------------CC-----
Q ss_conf 0-------0033------4-------------321793268999993199999982-----------------68-----
Q 002576 492 R-------DFLP------F-------------LQRSRRIPAVVEYVLSGHRFKVLI-----------------PK----- 523 (906)
Q Consensus 492 k-------~~l~------~-------------l~~~~~~~~vVe~V~sGsr~~v~i-----------------p~----- 523 (906)
. .++. . +..+.=+.|.|..|.+...+.|++ |.
T Consensus 390 ~~l~~~l~~~~~~~~~l~~~~~~~~G~~c~a~~~d~~wyRa~I~~v~~~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~l 469 (570)
T 3bdl_A 390 EKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFVDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTR 469 (570)
T ss_dssp HHHHHHHHHHHHHSCCCTTCCCCCTTCEEEEECTTSCEEEEEEEEEEETTEEEEEETTTCCEEEECGGGEECCCGGGSTT
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCEEEEEEEECCCEEEEEHHHCCCCCHHHHCC
T ss_conf 99999999987318887877679849789999879979999999976998599999947982998779873588899369
Q ss_pred --CCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEEC--CCCHHHHHHHCCCEEEEE
Q ss_conf --8415999980236999898563999999999963953999999987899699999938--953788998859868730
Q 002576 524 --ETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES--RTNVAVILLEAGLAKLQT 599 (906)
Q Consensus 524 --e~~~I~~~LaGI~~P~~~e~ws~EA~~f~k~~llqR~V~V~V~~~dk~G~~ig~L~~~--~~nia~~Lve~GLA~v~~ 599 (906)
..+++.|+|+||.+|. +..|+.+|..+|++++.++.+.+.|...+ .|.+++.|+.. ..+|+..||++|||....
T Consensus 470 ~lP~qA~~c~La~v~pp~-~~~w~~ea~~~f~~lv~~k~l~~~V~~~~-~~~~~V~L~~~~~~~sIn~~Lv~~G~A~~~~ 547 (570)
T 3bdl_A 470 VLPAQATEYAFAFIQVPQ-DDDARTDAVDSVVRDIQNTQCLLNVEHLS-AGCPHVTLQFADSKGDVGLGLVKEGLVMVEV 547 (570)
T ss_dssp TSCCCCEEEEETTEECCS-SHHHHHHHHHHHHHHHTTEEEEEEEEECC-SSSCEEEEEETTTCCBHHHHHHHTTSSEECC
T ss_pred CCCCCEEEEEECCEECCC-CCCCCHHHHHHHHHHHCCCEEEEEEEEEE-CCCEEEEEEECCCCCCHHHHHHHCCCEECCH
T ss_conf 998146899989769689-88873999999999868987999999995-8917999997999850799998789818552
Q ss_pred CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 3589999755899999999885
Q 002576 600 SFGSDRIPDSHLLEQAEKSAKS 621 (906)
Q Consensus 600 ~~s~~~~~~~~~L~~AE~~AK~ 621 (906)
............|..+|+.||.
T Consensus 548 ~~~~~~~~~~~~l~~~q~~Ak~ 569 (570)
T 3bdl_A 548 RKEKQFQKVITEYLNAQESAKS 569 (570)
T ss_dssp CCSGGGHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 0114489999999999999740
No 3
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=1.00 E-value=1 Score=355.68 Aligned_cols=229 Identities=31% Similarity=0.519 Sum_probs=200.4
Q ss_pred CCCCCEEEEEEEEEECCCEEEEEECC-CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECC
Q ss_conf 89873999999999519849999669-08899999999998703899978889867987999975899468999984056
Q 002576 644 GKQKEVLKVVVTEILGGGKFYVQQVG-DQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPR 722 (906)
Q Consensus 644 ~~~~~~~~V~VT~V~sp~~FyvQ~~~-~~~le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~Vi~~~~ 722 (906)
.+.+++++|+||+|.+|++||||..+ ...|+.||++|+.++....+.++++.|++|++|+|+|+ |+.||||+|+.+.
T Consensus 13 ~~~~~~~~V~Vt~v~~p~~f~vq~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~G~~c~a~~~-d~~wyRa~V~~~~- 90 (246)
T 2hqx_A 13 ERSASYKPVFVTEITDDLHFYVQDVETGTQFQKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEKVE- 90 (246)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHSCCCTTTCCCCTTCEEEEECT-TSCEEEEEEEEEE-
T ss_pred CCCCCEEEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC-CCCEEEEEEEEEC-
T ss_conf 78887899999998789989999899589999999999998833899777877997999999907-9979999999976-
Q ss_pred CCCCCCCCEEEEEEEECCCEEEECCCCCCCCCCCCC--CCCCCCCEEEECCEECCCCCCCCCHHHHHHHHHCCCCCCCEE
Q ss_conf 653357988999995259802313888224894446--762334200003120599999991999999942123479889
Q 002576 723 EKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLS--STPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEF 800 (906)
Q Consensus 723 ~~~~~~~~~v~V~fIDYGN~e~V~~s~Lr~Lp~~f~--~lP~qA~~c~La~V~pp~~~~~w~~eA~~~l~~~llv~gk~l 800 (906)
..+.+.|+||||||.+.|+.++||+||++|. .+|+||++|+|++|+||.. .+|..+|..+|.+ ++.++.+
T Consensus 91 -----~~~~~~V~~vDyGn~~~v~~~~lr~l~~~~~~~~lp~~a~~~~L~~v~~p~~-~~~~~eA~~~l~~--lv~~k~v 162 (246)
T 2hqx_A 91 -----SPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQD-DDARTDAVDSVVR--DIQNTQC 162 (246)
T ss_dssp -----ETTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCC------------------------------------
T ss_pred -----CCCEEEEEEEECCCEEEEEHHHHHCCCHHHCCCCCCHHHHHHHHHCEECCCC-CCCHHHHHHHHHH--HHCCCEE
T ss_conf -----9985999998079859980899416897675778965652343523666888-5106999999999--8659889
Q ss_pred EEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999990899843578986179999994389883888998859836741244596005999999999999998704564
Q 002576 801 RALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGM 880 (906)
Q Consensus 801 ~a~V~~~~~~~~~~~~~~~~~~~~VtL~d~~~~~sIn~~LV~~GlA~v~~~~~~~~~~~~~~~~~l~~aqe~Ak~~r~gi 880 (906)
.++|...+. +..+|+|++.+...+||+.||++|||.+.+... ....+..+.|+++|+.||++|+||
T Consensus 163 ~~~v~~~d~-----------g~~~v~L~~~~~~~~In~~LV~~GlA~~~~~~~---~~~~~~~~~~~~~e~~Ar~~r~Gl 228 (246)
T 2hqx_A 163 LLNVEHLSA-----------GCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNL 228 (246)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEECC-----------CEEEEEEEECCCCCCHHHHHHHCCCEEECCCCH---HHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999239-----------947999995999756899998788878034321---567999999999999998715683
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 2029999999999963
Q 002576 881 WQYGDIQSDDEDPLPS 896 (906)
Q Consensus 881 W~yGD~~~dde~~~~~ 896 (906)
|+|||+++|||+|||+
T Consensus 229 W~~gd~~~dd~~~~~~ 244 (246)
T 2hqx_A 229 WRYGDFRADDADEFGY 244 (246)
T ss_dssp ----------------
T ss_pred CCCCCCCCCCCCCCCC
T ss_conf 4279988242433577
No 4
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=327.02 Aligned_cols=215 Identities=31% Similarity=0.516 Sum_probs=190.3
Q ss_pred CCEEEEEEEEEECCCEEEEEECCC-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCCC
Q ss_conf 739999999995198499996690-8899999999998703899978889867987999975899468999984056653
Q 002576 647 KEVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKV 725 (906)
Q Consensus 647 ~~~~~V~VT~V~sp~~FyvQ~~~~-~~le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~Vi~~~~~~~ 725 (906)
.++++|+||+|.+|++||+|..+. ..|+.||++|+.++.+..+.+.++.|++|++|+|+|++|+.||||+|+++.
T Consensus 2 ~~~~~V~Vt~v~~p~~f~vq~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~g~~c~a~~~~d~~wyRa~V~~v~---- 77 (218)
T 2wac_A 2 VNYENVIVTEITETLTFFAQSVESGSKLESLMSKLHADFQSNPPIAGSYTPKRGDLVAAQFTLDNQWYRAKVERVQ---- 77 (218)
T ss_dssp CCCEEEEEEEECTTSEEEEEEGGGHHHHHHHHHHHHHHHHHSCCCTTSCCCCTTCEEEEECTTTCCEEEEEEEEEE----
T ss_pred CCEEEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEC----
T ss_conf 8269999999859988999989978999999999999885199978875588599999999999929999999946----
Q ss_pred CCCCCEEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 35798899999525980231388822489444676233420000312059999999199999994212347988999999
Q 002576 726 ESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVE 805 (906)
Q Consensus 726 ~~~~~~v~V~fIDYGN~e~V~~s~Lr~Lp~~f~~lP~qA~~c~La~V~pp~~~~~w~~eA~~~l~~~llv~gk~l~a~V~ 805 (906)
++.+.|+||||||.+.|+.++||+||++|..+|+||++|+|++|++|. +..|+.+|.++|++ ++.++.+.++|.
T Consensus 78 ---~~~~~V~~vDyG~~~~v~~~~l~~l~~~~~~~p~~a~~~~Lagv~~p~-~~~w~~eA~~~l~~--lv~~k~v~~~v~ 151 (218)
T 2wac_A 78 ---GSNATVLYIDYGNKETLPTNRLAALPPAFSSEKPYATEYALALVALPT-DNEDKEEALRAFSE--DVLNHKVQLNVE 151 (218)
T ss_dssp ---TTEEEEEETTTCCEEEEEGGGEEECCGGGSSSCCSEEEEEETTEECCS-SHHHHHHHHHHHHH--HHBTCEEEEEEE
T ss_pred ---CCEEEEEEEECCCEEEECHHHCCCCCHHHCCCCCCEEEEEECCEECCC-CCCHHHHHHHHHHH--HHCCCEEEEEEE
T ss_conf ---990999998349969971698030786664698320599989779799-85308999999999--866977999999
Q ss_pred EEECCCCCCCCCCCCCE-EEEEEEECCCCCCHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99089984357898617-99999943898838889988598367412445960059999999999999987045642029
Q 002576 806 ERDSSGGKLKGQGTGTL-LHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYG 884 (906)
Q Consensus 806 ~~~~~~~~~~~~~~~~~-~~VtL~d~~~~~sIn~~LV~~GlA~v~~~~~~~~~~~~~~~~~l~~aqe~Ak~~r~giW~yG 884 (906)
+.+ . +. +.|+|++..++.+||+.||++|||.+.++.. ....+..+.|.++|+.||++|+|||+||
T Consensus 152 ~~d-~----------g~~~~V~L~~~~~~~~in~~Lv~~G~A~~~~~~~---~~~~~~~~~~~~~e~~Ar~~r~GlW~~g 217 (218)
T 2wac_A 152 LKV-T----------GSPNLATLRDPTTKVDFGKQLVAEGLVLAEQRGE---RKLKELVDQYKAAQEAARVAHLAIWKYG 217 (218)
T ss_dssp ECC-T----------TSCEEEEEECTTTCCBHHHHHHHTTSSEECCCCC---GGGHHHHHHHHHHHHHHHHTTCGGGTTC
T ss_pred EEC-C----------CCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCC---HHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 974-9----------9628999993898734899998789941541012---3389999999999999998337876368
Q ss_pred C
Q ss_conf 9
Q 002576 885 D 885 (906)
Q Consensus 885 D 885 (906)
|
T Consensus 218 d 218 (218)
T 2wac_A 218 D 218 (218)
T ss_dssp -
T ss_pred C
T ss_conf 8
No 5
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=1.00 E-value=1 Score=287.11 Aligned_cols=187 Identities=26% Similarity=0.370 Sum_probs=165.4
Q ss_pred CCCCCCEEEEEEEEEECCCEEEEEECCC---HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEE
Q ss_conf 5898739999999995198499996690---8899999999998703899978889867987999975899468999984
Q 002576 643 EGKQKEVLKVVVTEILGGGKFYVQQVGD---QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVN 719 (906)
Q Consensus 643 ~~~~~~~~~V~VT~V~sp~~FyvQ~~~~---~~le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~Vi~ 719 (906)
+++.+.+++|+||+|.||++||||..+. ..|+.||++|+.++....+. .+.|++|++|+|+|++|+.||||+|++
T Consensus 12 ~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~L~~L~~~l~~~~~~~~~~--~~~~~~G~~c~a~~~~d~~WyRa~V~~ 89 (226)
T 4b9x_A 12 EFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKPPN--GFKAEIGRPCCAFFSGDGNWYRALVKE 89 (226)
T ss_dssp CCCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHHHHHHHHTSSSCC----CCCCTTCEEEEEETTTTEEEEEEEEE
T ss_pred ECCCCCEEEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCEEEEEECCCCEEEEEEEEE
T ss_conf 759999899999999079999999868833999999999999988418987--778989989999988899499899999
Q ss_pred ECCCCCCCCCCEEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCEECCCCCCCCCHHHHHHHHHCCCCCCCE
Q ss_conf 05665335798899999525980231388822489444676233420000312059999999199999994212347988
Q 002576 720 APREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNE 799 (906)
Q Consensus 720 ~~~~~~~~~~~~v~V~fIDYGN~e~V~~s~Lr~Lp~~f~~lP~qA~~c~La~V~pp~~~~~w~~eA~~~l~~~llv~gk~ 799 (906)
+. .++.++|+||||||.+.|+.++||+||++|..+|+||++|+|++|+|+ +.+|+.+|.++|++ ++.++.
T Consensus 90 ~~------~~~~~~V~~vDyGn~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~--~~~w~~ea~~~f~~--l~~~k~ 159 (226)
T 4b9x_A 90 IL------PSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP--NKHWTKEATARFQA--CVVGLK 159 (226)
T ss_dssp EC------SSSEEEEECTTTCCEEEEEGGGEECCCGGGSSSCBCCEEEEESSEECS--SSSCCHHHHHHHHH--HHTTCC
T ss_pred EC------CCCEEEEEEEECCCEEEEEHHHHCCCHHHHCCCCCCEEEEEEECEECC--CCCCCHHHHHHHHH--HHCCCE
T ss_conf 87------999599999813988999789916385887156621699999047989--99998999999999--878986
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEEEEECC--CCCCHHHHHHHCCCEEEECCC
Q ss_conf 99999999089984357898617999999438--988388899885983674124
Q 002576 800 FRALVEERDSSGGKLKGQGTGTLLHVTLVAVD--AEISINTLMVQEGLARVERRK 852 (906)
Q Consensus 800 l~a~V~~~~~~~~~~~~~~~~~~~~VtL~d~~--~~~sIn~~LV~~GlA~v~~~~ 852 (906)
|.++|..... +.+.|+|++.+ .+.+||+.||++|||......
T Consensus 160 l~~~V~~~~~-----------~~~~V~L~d~~~~~~~~I~~~Lv~~gla~~~~~~ 203 (226)
T 4b9x_A 160 LQARVVEITA-----------NGVGVELTDLSTPYPKIISDVLIREQLVLRCGSP 203 (226)
T ss_dssp EEEEEEEECS-----------SCEEEEEEECSSSSCEEHHHHHHHTTSSEECC--
T ss_pred EEEEEEEEEC-----------CEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCC
T ss_conf 9999999939-----------9279999988999986479999877996046882
No 6
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=1.00 E-value=1 Score=282.67 Aligned_cols=184 Identities=27% Similarity=0.379 Sum_probs=163.4
Q ss_pred CCCCCCEEEEEEEEEECCCEEEEEECCC---HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEE
Q ss_conf 5898739999999995198499996690---8899999999998703899978889867987999975899468999984
Q 002576 643 EGKQKEVLKVVVTEILGGGKFYVQQVGD---QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVN 719 (906)
Q Consensus 643 ~~~~~~~~~V~VT~V~sp~~FyvQ~~~~---~~le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~Vi~ 719 (906)
+++.+++++|+||+|.||++||||..+. ..|+.||++|+.++.+..+. .+.|++|++|+|+|++|+.||||+|++
T Consensus 12 ~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~l~~L~~~l~~~~~~~~~~--~~~~~~G~~c~a~~~~d~~wyRa~V~~ 89 (201)
T 4b9w_A 12 EFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKPPN--GFKAEIGRPCCAFFSGDGNWYRALVKE 89 (201)
T ss_dssp CCCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHHHHHHHHHHSSSCC--CCCCCTTCEEEEEETTTTEEEEEEEEE
T ss_pred ECCCCCEEEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCEEEEEECCCCEEEEEEEEE
T ss_conf 759999899999999379999999888826999999999999988548987--778988989999988899299899999
Q ss_pred ECCCCCCCCCCEEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCEECCCCCCCCCHHHHHHHHHCCCCCCCE
Q ss_conf 05665335798899999525980231388822489444676233420000312059999999199999994212347988
Q 002576 720 APREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNE 799 (906)
Q Consensus 720 ~~~~~~~~~~~~v~V~fIDYGN~e~V~~s~Lr~Lp~~f~~lP~qA~~c~La~V~pp~~~~~w~~eA~~~l~~~llv~gk~ 799 (906)
+. .++.++|+||||||.+.|+.++||+||++|..+|+||++|+|++|+|+ +.+|+.+|.++|++ ++.++.
T Consensus 90 ~~------~~~~~~V~~vDyG~~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~--~~~w~~ea~~~f~~--l~~~k~ 159 (201)
T 4b9w_A 90 IL------PSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP--NKHWTKEATARFQA--CVVGLK 159 (201)
T ss_dssp EC------TTSCEEEEETTTCCEEEECGGGEEECCGGGGSSCBCCEEEEESSEECS--SSSCCHHHHHHHHH--HHTTCC
T ss_pred EC------CCCEEEEEEECCCCEEEEEHHHHCCCHHHHCCCCHHHEEEEECCEECC--CCCCCHHHHHHHHH--HHCCCE
T ss_conf 87------999599999814988999889945471767166644199999298958--99997999999999--978997
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEEEEECC--CCCCHHHHHHHCCCEEEE
Q ss_conf 99999999089984357898617999999438--988388899885983674
Q 002576 800 FRALVEERDSSGGKLKGQGTGTLLHVTLVAVD--AEISINTLMVQEGLARVE 849 (906)
Q Consensus 800 l~a~V~~~~~~~~~~~~~~~~~~~~VtL~d~~--~~~sIn~~LV~~GlA~v~ 849 (906)
+.++|..... +.+.|+|++.+ .+.+||+.||++|||..+
T Consensus 160 l~~~V~~~~~-----------~~~~V~L~d~~~~~~~~I~~~Lv~~gLA~kc 200 (201)
T 4b9w_A 160 LQARVVEITA-----------NGVGVELTDLSTPYPKIISDVLIREQLVLRC 200 (201)
T ss_dssp EEEEEEEEET-----------TEEEEEEEECSSSSCEEHHHHHHHTTSSEEC
T ss_pred EEEEEEEEEC-----------CEEEEEEEECCCCCCCCHHHHHHHCCCEECC
T ss_conf 9999999969-----------9789999998999965569999877684015
No 7
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=1.00 E-value=1 Score=247.28 Aligned_cols=165 Identities=22% Similarity=0.319 Sum_probs=142.8
Q ss_pred CEEEEEEEEEECCCEEEEEECCC-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCC
Q ss_conf 39999999995198499996690-88999999999987038999788898679879999758994689999840566533
Q 002576 648 EVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVE 726 (906)
Q Consensus 648 ~~~~V~VT~V~sp~~FyvQ~~~~-~~le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~Vi~~~~~~~~ 726 (906)
++++|+||+|.||++||+|..+. ..|+.||++|+.++... |. ...|++|++|+|+|++|+.||||+|+++.
T Consensus 2 e~~~V~Vt~v~~p~~F~vq~~~~~~~L~~L~~~l~~~~~~~-p~--~~~~~~G~~c~A~~~~d~~wyRa~I~~~~----- 73 (169)
T 3ntk_A 2 ELHNCVVVQFDGPMSFYVQMESDVPALEQMTDKLLDAEQDL-PA--FSDLKEGALCVAQFPEDEVFYRAQIRKVL----- 73 (169)
T ss_dssp CCEEEEEEEEEETTEEEEEEGGGHHHHHHHHHHHHHHGGGC-CB--CCCCCTTCEEEEEETTTTEEEEEEEEEEC-----
T ss_pred CCEEEEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHCC-CC--CCCCCCCCEEEEEECCCCCEEEEEEEEEC-----
T ss_conf 50589999996899799998797799999999998788518-98--77899899999998789969999999977-----
Q ss_pred CCCCEEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf 57988999995259802313888224894446762334200003120599999991999999942123479889999999
Q 002576 727 SVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEE 806 (906)
Q Consensus 727 ~~~~~v~V~fIDYGN~e~V~~s~Lr~Lp~~f~~lP~qA~~c~La~V~pp~~~~~w~~eA~~~l~~~llv~gk~l~a~V~~ 806 (906)
..+.+.|+||||||.+.+ ++||+||++|..+|+||++|+|++|+|+.+ +.+|..+|.+ ++.|+.+.++|++
T Consensus 74 -~~~~~~V~fvDyGn~~~v--~~lr~l~~~f~~lP~qA~~c~L~~v~~~~~----~~ea~~~f~~--l~~~k~l~~~V~~ 144 (169)
T 3ntk_A 74 -DDGKCEVHFIDFGNNAVT--QQFRQLPEELAKPARYSRHCELDASTISKC----DAALLQSFID--TRFSETFQVEILA 144 (169)
T ss_dssp -STTCEEEEETTTTEEEEE--SCEECCCHHHHSSCCSSEEEEECGGGSCHH----HHHHHHHHHH--TTTTSEEEEEEEE
T ss_pred -CCCEEEEEEEECCCEEEH--HHHHCCCHHHHHCCCEEEEEEECCCCCCCC----HHHHHHHHHH--HHCCCEEEEEEEE
T ss_conf -999799999944996981--344434787750780059999898198999----0999999999--8679859999999
Q ss_pred EECCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Q ss_conf 90899843578986179999994389883888998
Q 002576 807 RDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMV 841 (906)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~VtL~d~~~~~sIn~~LV 841 (906)
+.. +..+.|+|+++ +.+||+.|=
T Consensus 145 ~~~----------~~~~~V~L~~~--~~~in~~L~ 167 (169)
T 3ntk_A 145 TKG----------TGTHVVRLFYQ--SKNISEKLQ 167 (169)
T ss_dssp ECT----------TSCEEEEEEET--TEEHHHHCT
T ss_pred ECC----------CCCEEEEEEEC--CCCHHHHHH
T ss_conf 159----------98789999979--997889852
No 8
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=1.00 E-value=1 Score=179.16 Aligned_cols=131 Identities=23% Similarity=0.351 Sum_probs=110.3
Q ss_pred CCCEEEEEEEEECCCEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 99530999998129989999828970799998320489989989864468644457873200001421267886521023
Q 002576 71 GRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTAS 150 (906)
Q Consensus 71 ~~~~~~iVe~V~dG~t~rv~l~~~~~~i~v~laGI~~P~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 150 (906)
-...+|+|.+|.|||||+|.. .++.++|||+||||||+
T Consensus 7 ~~~~~~~V~~V~DGDTi~v~~--~g~~~~VRL~gIDaPE~---------------------------------------- 44 (143)
T 4eqp_A 7 LHKEPATLIKAIDGDTVKLMY--KGQPMTFRLLLVDTPEF---------------------------------------- 44 (143)
T ss_dssp CCEEEEEEEEECSSSEEEEEE--TTEEEEEEETTEECCCT----------------------------------------
T ss_pred CCEEEEEEEEEECCCEEEEEE--CCCEEEEEEEEECCCCC----------------------------------------
T ss_conf 740469999997899999985--99089999986638976----------------------------------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHC-CCEEEEEE---EECCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEE-ECCCCCC
Q ss_conf 79999874349999999997706-98699999---1106999689999937999968899999871856886-3332202
Q 002576 151 AGQQSTDEPFALDAKYFTEMRVL-NREVRIVL---EGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYI-EWSANMM 225 (906)
Q Consensus 151 ~~~~~~~ep~a~eAk~f~e~rll-~r~V~i~~---~~~D~~g~~~g~V~~~~g~~~~di~~~Ll~~GlA~~~-~~~~~~~ 225 (906)
.+|||.+|+.|+..+|+ ++.|.|.+ .+.|+|||++|+|+. +|.+ |+++||++|||+++ .+..+.
T Consensus 45 ------~q~~g~~A~~~l~~ll~~g~~V~~~~d~~~~~D~ygR~la~v~~-~g~~---vn~~lv~~GlA~v~~~~~~~~- 113 (143)
T 4eqp_A 45 ------NEKYGPEASAFTKKMVENAKKDEVEFDKGQRTDKYGRGLAYIYA-DGKM---VNEALVRQGLAKVAYVYKGNN- 113 (143)
T ss_dssp ------TSTTHHHHHHHHHHHHHHCSCEEEECCSSCSBCTTSCEEEEEEE-TTEE---HHHHHHHTTSSEECCCCTTSC-
T ss_pred ------CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEE-CCCH---HHHHHHHCCCEEEEEECCCCC-
T ss_conf ------89569999999999986398189998556564778989999999-9955---899999879868976518883-
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 0899999999999999825535654588999
Q 002576 226 EEDAKRRLKAADLQAKKTRLRMWTNYVPPQS 256 (906)
Q Consensus 226 ~~~~~~~l~~aE~~Ak~~r~glW~~~~~~~~ 256 (906)
.+...|.+||.+||++|+|||+...|++.
T Consensus 114 --~~~~~~~~aE~~Ar~~k~GlW~~~~p~~g 142 (143)
T 4eqp_A 114 --THEQLLRKAEAQAKKEKLNIWSEDNADSG 142 (143)
T ss_dssp --TTHHHHHHHHHHHHHTTCGGGC-------
T ss_pred --CHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf --16999999999999857898999999989
No 9
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=1.00 E-value=1 Score=173.38 Aligned_cols=100 Identities=23% Similarity=0.442 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCEEEECCCC
Q ss_conf 08899999999998703899978889867987999975899468999984056653357988999995259802313888
Q 002576 670 DQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNK 749 (906)
Q Consensus 670 ~~~le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~Vi~~~~~~~~~~~~~v~V~fIDYGN~e~V~~s~ 749 (906)
...|++||++|+.++....+ .++.|++|++|+|+|++|+.||||+|+++. ..+.+.|+||||||.+.|+.++
T Consensus 9 ~~~l~~L~~~m~~~y~~~~~--~~~~~~~G~~c~a~~~~d~~wyRA~V~~~~------~~~~~~V~fvDyGn~e~v~~~~ 80 (110)
T 2diq_A 9 SLQLDKLVNEMTQHYENSVP--EDLTVHVGDIVAAPLPTNGSWYRARVLGTL------ENGNLDLYFVDFGDNGDCPLKD 80 (110)
T ss_dssp CHHHHHHHHHHHHHHTTSCC--CCCCCCTTCEEEECCTTTCSCEEEEECCCC------SSSCEEEEETTTCCEEEECGGG
T ss_pred HHHHHHHHHHHHHHHCCCCC--CCCCCCCCCEEEEEECCCCEEEEEEEEEEC------CCCEEEEEEEECCCEEEEEHHH
T ss_conf 89999999999999824899--877898799999998789959999999988------9995999999379859986499
Q ss_pred CCCCCCCCCCCCCCCCEEEECCEECCCC
Q ss_conf 2248944467623342000031205999
Q 002576 750 LRPIDPSLSSTPPLAQLCSLAYIKIPAL 777 (906)
Q Consensus 750 Lr~Lp~~f~~lP~qA~~c~La~V~pp~~ 777 (906)
||+|+++|..+|+||++|+|++|+|...
T Consensus 81 Lr~l~~~f~~lP~qA~~c~L~~v~p~~~ 108 (110)
T 2diq_A 81 LRALRSDFLSLPFQAIECSLARIASGPS 108 (110)
T ss_dssp CEECCHHHHSSCCSSCCSCSSCSCCSCC
T ss_pred HHCCCHHHHCCCCCEEEEEECCEEECCC
T ss_conf 5507597727894409999998598999
No 10
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=1.00 E-value=1 Score=163.79 Aligned_cols=91 Identities=22% Similarity=0.475 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCEEEECCCC
Q ss_conf 08899999999998703899978889867987999975899468999984056653357988999995259802313888
Q 002576 670 DQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNK 749 (906)
Q Consensus 670 ~~~le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~Vi~~~~~~~~~~~~~v~V~fIDYGN~e~V~~s~ 749 (906)
+.+|++||++|+.+|.+..+ ..+.|++|++|+|+|++|+.||||+|+++. .++.+.|+||||||.+.|+.++
T Consensus 4 s~~Le~Lm~~m~~~y~~~~~--~~~~~~~G~~c~a~~~~d~~wyRA~I~~~~------~~~~~~V~fvDyGn~e~v~~~~ 75 (94)
T 3fdr_A 4 SLQLDKLVNEMTQHYENSVP--EDLTVHVGDIVAAPLPTNGSWYRARVLGTL------ENGNLDLYFVDFGDNGDCPLKD 75 (94)
T ss_dssp -CHHHHHHHHHHHHHTTCCC--CCCCCCTTCEEEEEETTTTEEEEEEEEEEC------TTSCEEEEETTTCCEEEECGGG
T ss_pred HHHHHHHHHHHHHHHHCCCC--CCCCCCCCCEEEEEECCCCEEEEEEEEEEC------CCCEEEEEEECCCCEEEEEHHH
T ss_conf 79999999999999803999--877788899999998889909999999987------9982999998179859977899
Q ss_pred CCCCCCCCCCCCCCCCEEE
Q ss_conf 2248944467623342000
Q 002576 750 LRPIDPSLSSTPPLAQLCS 768 (906)
Q Consensus 750 Lr~Lp~~f~~lP~qA~~c~ 768 (906)
||+|+++|..+|+||++|+
T Consensus 76 lr~l~~~f~~lP~qA~~Cs 94 (94)
T 3fdr_A 76 LRALRSDFLSLPFQAIECS 94 (94)
T ss_dssp CEECCGGGGCSCCCCCCC-
T ss_pred HHHCCHHHHCCCCCEEEEC
T ss_conf 2416997846995069809
Done!