Query 002577
Match_columns 906
No_of_seqs 434 out of 2131
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 02:48:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243 Kinesin-like protein [ 100.0 2E-127 4E-132 1119.6 82.9 892 1-906 146-1040(1041)
2 KOG4280 Kinesin-like protein [ 100.0 3.7E-67 7.9E-72 591.5 17.5 272 2-283 97-371 (574)
3 KOG0245 Kinesin-like protein [ 100.0 7.4E-67 1.6E-71 597.6 19.5 311 2-329 99-422 (1221)
4 KOG0240 Kinesin (SMY1 subfamil 100.0 3.7E-62 7.9E-67 534.1 38.2 259 3-274 95-358 (607)
5 PLN03188 kinesin-12 family pro 100.0 3.9E-60 8.4E-65 559.1 26.1 278 2-289 177-481 (1320)
6 KOG0242 Kinesin-like protein [ 100.0 3.1E-58 6.8E-63 541.2 24.4 268 2-284 98-368 (675)
7 KOG0241 Kinesin-like protein [ 100.0 6E-57 1.3E-61 505.8 24.4 268 2-279 105-382 (1714)
8 cd01364 KISc_BimC_Eg5 Kinesin 100.0 4.8E-55 1E-59 489.9 26.0 248 2-256 93-352 (352)
9 cd01373 KISc_KLP2_like Kinesin 100.0 5E-55 1.1E-59 485.2 24.6 235 2-247 86-337 (337)
10 cd01370 KISc_KIP3_like Kinesin 100.0 4.5E-55 9.8E-60 485.8 23.9 235 2-247 99-338 (338)
11 cd01368 KISc_KIF23_like Kinesi 100.0 6.6E-54 1.4E-58 477.4 24.5 235 2-245 100-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 2.8E-53 6E-58 475.6 25.9 245 2-254 100-356 (356)
13 KOG0244 Kinesin-like protein [ 100.0 1.2E-50 2.5E-55 467.9 46.4 255 15-281 93-350 (913)
14 cd01371 KISc_KIF3 Kinesin moto 100.0 5E-52 1.1E-56 461.3 25.9 237 2-247 93-333 (333)
15 KOG0247 Kinesin-like protein [ 100.0 1.1E-51 2.3E-56 462.2 25.3 216 37-257 226-446 (809)
16 cd01376 KISc_KID_like Kinesin 100.0 8.9E-52 1.9E-56 456.6 23.3 228 2-245 92-319 (319)
17 cd01375 KISc_KIF9_like Kinesin 100.0 2E-51 4.4E-56 456.2 25.4 239 2-245 92-334 (334)
18 cd01367 KISc_KIF2_like Kinesin 100.0 1.2E-51 2.7E-56 455.7 22.8 226 2-245 96-322 (322)
19 cd01374 KISc_CENP_E Kinesin mo 100.0 2.8E-51 6.1E-56 453.7 24.5 234 2-247 85-321 (321)
20 cd01372 KISc_KIF4 Kinesin moto 100.0 5.7E-51 1.2E-55 455.6 25.7 240 2-248 85-341 (341)
21 cd01369 KISc_KHC_KIF5 Kinesin 100.0 9.1E-51 2E-55 450.7 24.7 233 2-247 88-325 (325)
22 cd01366 KISc_C_terminal Kinesi 100.0 7.8E-50 1.7E-54 444.3 25.9 238 2-250 89-329 (329)
23 smart00129 KISc Kinesin motor, 100.0 7.3E-49 1.6E-53 438.1 25.6 241 2-254 91-335 (335)
24 PF00225 Kinesin: Kinesin moto 100.0 2.3E-49 5E-54 442.5 19.9 239 3-247 87-335 (335)
25 KOG0239 Kinesin (KAR3 subfamil 100.0 2.7E-49 5.8E-54 463.5 16.0 243 2-255 404-648 (670)
26 KOG0246 Kinesin-like protein [ 100.0 1.9E-47 4.1E-52 416.5 19.6 234 2-252 303-546 (676)
27 cd00106 KISc Kinesin motor dom 100.0 1.3E-46 2.8E-51 419.1 25.6 234 2-245 90-328 (328)
28 COG5059 KIP1 Kinesin-like prot 100.0 7.4E-46 1.6E-50 433.8 26.7 267 3-290 102-372 (568)
29 KOG0161 Myosin class II heavy 100.0 6.5E-35 1.4E-39 366.0 70.5 482 301-825 1002-1509(1930)
30 cd01363 Motor_domain Myosin an 100.0 6.4E-35 1.4E-39 297.6 13.7 129 98-226 58-186 (186)
31 PF01576 Myosin_tail_1: Myosin 100.0 4.7E-33 1E-37 340.7 0.0 423 360-825 3-451 (859)
32 KOG0161 Myosin class II heavy 99.9 6.4E-15 1.4E-19 187.2 74.0 433 296-745 955-1396(1930)
33 PF01576 Myosin_tail_1: Myosin 99.0 4.4E-11 9.6E-16 147.8 0.0 347 393-770 8-362 (859)
34 PRK02224 chromosome segregatio 99.0 0.00051 1.1E-08 87.3 66.1 16 263-278 182-197 (880)
35 PRK02224 chromosome segregatio 98.9 0.00093 2E-08 85.0 67.4 13 817-829 737-749 (880)
36 KOG4674 Uncharacterized conser 98.8 0.0025 5.5E-08 82.0 69.2 62 260-330 653-714 (1822)
37 TIGR00606 rad50 rad50. This fa 98.7 0.0044 9.5E-08 81.8 63.3 23 261-283 605-627 (1311)
38 KOG4674 Uncharacterized conser 98.7 0.0057 1.2E-07 79.0 70.5 50 642-692 1247-1299(1822)
39 TIGR00606 rad50 rad50. This fa 98.6 0.01 2.3E-07 78.3 69.2 22 811-832 1134-1155(1311)
40 PF13931 Microtub_bind: Kinesi 98.6 2.6E-08 5.7E-13 94.0 3.2 40 832-875 3-42 (143)
41 PF10174 Cast: RIM-binding pro 98.6 0.0056 1.2E-07 74.5 60.0 124 258-381 235-363 (775)
42 KOG0994 Extracellular matrix g 98.6 0.0056 1.2E-07 74.0 54.9 105 641-754 1580-1687(1758)
43 PF12128 DUF3584: Protein of u 98.5 0.013 2.8E-07 76.6 74.3 21 668-688 690-710 (1201)
44 KOG0243 Kinesin-like protein [ 98.5 0.011 2.3E-07 72.7 65.6 54 812-872 900-953 (1041)
45 KOG0977 Nuclear envelope prote 98.4 0.0033 7.1E-08 72.7 37.9 123 319-441 92-214 (546)
46 PF12128 DUF3584: Protein of u 98.3 0.036 7.8E-07 72.5 63.9 51 79-129 17-74 (1201)
47 KOG0612 Rho-associated, coiled 98.2 0.051 1.1E-06 67.2 50.0 68 643-712 747-817 (1317)
48 TIGR02168 SMC_prok_B chromosom 98.1 0.11 2.3E-06 68.5 79.8 8 95-102 39-46 (1179)
49 PF07888 CALCOCO1: Calcium bin 98.1 0.049 1.1E-06 63.2 48.3 25 639-663 432-456 (546)
50 PF10174 Cast: RIM-binding pro 98.0 0.079 1.7E-06 64.8 65.8 150 262-413 4-166 (775)
51 KOG0977 Nuclear envelope prote 98.0 0.014 2.9E-07 67.7 32.7 304 491-809 55-376 (546)
52 PF00038 Filament: Intermediat 98.0 0.046 9.9E-07 60.7 37.4 107 519-671 44-150 (312)
53 COG1196 Smc Chromosome segrega 98.0 0.17 3.7E-06 66.2 77.2 124 291-414 213-341 (1163)
54 PRK04863 mukB cell division pr 98.0 0.18 3.9E-06 66.4 64.1 41 692-732 837-877 (1486)
55 PRK03918 chromosome segregatio 97.9 0.16 3.5E-06 64.7 74.7 16 263-278 171-186 (880)
56 TIGR02169 SMC_prok_A chromosom 97.9 0.23 5E-06 65.4 72.5 8 95-102 119-126 (1164)
57 PF00038 Filament: Intermediat 97.8 0.085 1.8E-06 58.5 41.2 32 450-481 121-152 (312)
58 KOG0994 Extracellular matrix g 97.8 0.22 4.8E-06 61.0 51.9 18 650-667 1561-1578(1758)
59 KOG0976 Rho/Rac1-interacting s 97.7 0.19 4E-06 59.4 61.5 29 700-728 477-505 (1265)
60 PF07888 CALCOCO1: Calcium bin 97.7 0.19 4.1E-06 58.5 47.7 19 394-412 218-236 (546)
61 KOG4673 Transcription factor T 97.7 0.21 4.5E-06 58.2 55.9 82 648-733 707-791 (961)
62 KOG4643 Uncharacterized coiled 97.6 0.35 7.7E-06 58.8 47.5 53 228-288 172-225 (1195)
63 TIGR02169 SMC_prok_A chromosom 97.5 0.7 1.5E-05 60.9 75.3 6 153-158 161-166 (1164)
64 KOG0995 Centromere-associated 97.5 0.32 6.9E-06 56.2 48.9 11 505-515 490-500 (581)
65 KOG0612 Rho-associated, coiled 97.5 0.6 1.3E-05 58.2 50.7 23 259-281 463-485 (1317)
66 PF09726 Macoilin: Transmembra 97.5 0.11 2.3E-06 63.4 30.4 23 260-282 417-439 (697)
67 PRK04778 septation ring format 97.5 0.5 1.1E-05 57.0 51.0 44 304-347 111-154 (569)
68 KOG0971 Microtubule-associated 97.4 0.53 1.2E-05 56.6 44.8 19 265-283 228-246 (1243)
69 KOG0976 Rho/Rac1-interacting s 97.4 0.53 1.2E-05 55.7 59.3 71 647-728 405-478 (1265)
70 PRK03918 chromosome segregatio 97.3 0.99 2.1E-05 57.6 73.4 9 94-102 38-46 (880)
71 PF05483 SCP-1: Synaptonemal c 97.3 0.58 1.3E-05 54.9 75.2 58 762-823 705-762 (786)
72 KOG0996 Structural maintenance 97.3 0.98 2.1E-05 56.2 71.3 155 692-860 914-1070(1293)
73 KOG0995 Centromere-associated 97.3 0.62 1.4E-05 53.9 45.2 22 219-242 147-168 (581)
74 PRK04778 septation ring format 97.3 0.83 1.8E-05 55.1 57.9 42 482-523 223-272 (569)
75 KOG0971 Microtubule-associated 97.2 0.96 2.1E-05 54.5 45.6 33 701-733 506-538 (1243)
76 COG1196 Smc Chromosome segrega 97.2 1.7 3.7E-05 57.1 77.0 11 150-160 160-170 (1163)
77 PRK11637 AmiB activator; Provi 97.0 1.1 2.3E-05 52.2 32.9 13 317-329 45-57 (428)
78 KOG1029 Endocytic adaptor prot 97.0 0.38 8.2E-06 56.8 26.5 17 15-31 43-59 (1118)
79 PF09726 Macoilin: Transmembra 96.9 1.2 2.6E-05 54.4 31.6 41 524-564 617-657 (697)
80 PF05701 WEMBL: Weak chloropla 96.9 1.6 3.4E-05 52.0 59.2 21 468-488 169-189 (522)
81 KOG0996 Structural maintenance 96.8 2.4 5.3E-05 53.0 67.3 50 379-428 388-437 (1293)
82 COG1579 Zn-ribbon protein, pos 96.7 0.99 2.2E-05 47.4 24.4 106 308-413 41-148 (239)
83 PF00261 Tropomyosin: Tropomyo 96.6 1.3 2.8E-05 47.1 32.0 8 392-399 95-102 (237)
84 PRK11637 AmiB activator; Provi 96.5 2.4 5.3E-05 49.2 31.4 12 541-552 224-235 (428)
85 KOG4673 Transcription factor T 96.5 2.6 5.7E-05 49.5 58.4 17 223-239 399-415 (961)
86 KOG0933 Structural maintenance 96.1 5.3 0.00011 49.3 57.7 18 541-558 682-699 (1174)
87 PF05667 DUF812: Protein of un 96.1 4.9 0.00011 48.3 35.3 146 264-421 324-472 (594)
88 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.0 1.5 3.2E-05 42.1 20.2 107 304-413 23-129 (132)
89 PF15070 GOLGA2L5: Putative go 96.0 5.4 0.00012 48.2 47.5 34 384-417 162-195 (617)
90 COG5185 HEC1 Protein involved 95.8 4.3 9.4E-05 45.8 40.8 48 515-562 498-545 (622)
91 PF06160 EzrA: Septation ring 95.8 6.2 0.00013 47.5 59.8 45 479-523 216-268 (560)
92 KOG0933 Structural maintenance 95.7 7.7 0.00017 48.0 61.9 55 707-765 988-1042(1174)
93 PF14915 CCDC144C: CCDC144C pr 95.7 3.7 8.1E-05 44.0 41.2 70 639-708 215-287 (305)
94 KOG0250 DNA repair protein RAD 95.7 9 0.00019 48.1 65.3 133 317-449 279-415 (1074)
95 KOG0964 Structural maintenance 95.6 8.2 0.00018 47.6 59.3 42 524-565 392-433 (1200)
96 PRK09039 hypothetical protein; 95.6 4.1 8.8E-05 45.8 24.5 17 221-240 12-28 (343)
97 PF06160 EzrA: Septation ring 95.5 7.9 0.00017 46.6 54.1 21 424-444 215-235 (560)
98 PF05667 DUF812: Protein of un 95.4 8.4 0.00018 46.4 37.3 44 402-445 393-436 (594)
99 PF13851 GAS: Growth-arrest sp 95.4 3.9 8.5E-05 42.2 26.1 21 472-492 179-199 (201)
100 PF06705 SF-assemblin: SF-asse 95.4 4.8 0.0001 43.1 32.2 204 578-803 33-240 (247)
101 PRK04863 mukB cell division pr 95.3 16 0.00034 48.9 69.1 19 197-215 205-224 (1486)
102 PF15619 Lebercilin: Ciliary p 95.2 4.3 9.3E-05 41.6 25.4 23 262-284 13-35 (194)
103 COG4942 Membrane-bound metallo 95.1 7.8 0.00017 44.0 32.3 44 320-363 60-103 (420)
104 KOG0963 Transcription factor/C 95.0 10 0.00022 44.8 39.0 36 239-274 44-79 (629)
105 PF05701 WEMBL: Weak chloropla 94.6 13 0.00028 44.3 64.1 15 706-720 414-428 (522)
106 KOG1029 Endocytic adaptor prot 94.6 14 0.00031 44.4 37.7 28 818-846 734-761 (1118)
107 KOG0946 ER-Golgi vesicle-tethe 94.5 15 0.00033 44.5 32.8 65 533-598 803-867 (970)
108 TIGR03007 pepcterm_ChnLen poly 94.4 14 0.00031 43.8 27.5 77 214-290 119-197 (498)
109 COG3883 Uncharacterized protei 94.3 8.6 0.00019 41.0 25.0 31 527-557 174-204 (265)
110 COG5185 HEC1 Protein involved 94.2 12 0.00027 42.3 37.4 76 505-598 538-613 (622)
111 PF05557 MAD: Mitotic checkpoi 94.2 0.041 8.8E-07 68.3 4.2 10 204-213 23-32 (722)
112 COG0419 SbcC ATPase involved i 94.0 26 0.00056 45.0 69.5 39 93-132 39-79 (908)
113 PF15619 Lebercilin: Ciliary p 93.4 10 0.00023 38.8 27.0 49 452-500 138-186 (194)
114 PF15070 GOLGA2L5: Putative go 93.4 23 0.00051 42.9 52.6 28 640-667 348-375 (617)
115 PF05911 DUF869: Plant protein 93.4 9.1 0.0002 47.3 22.0 65 374-438 651-715 (769)
116 PHA02562 46 endonuclease subun 93.3 24 0.00052 42.5 37.6 17 93-109 41-57 (562)
117 PF04849 HAP1_N: HAP1 N-termin 93.1 16 0.00034 39.9 29.3 141 350-498 163-303 (306)
118 PF09730 BicD: Microtubule-ass 93.0 28 0.00061 42.6 45.9 95 639-745 367-461 (717)
119 PF06008 Laminin_I: Laminin Do 92.7 17 0.00037 39.3 32.0 19 392-410 90-108 (264)
120 COG4942 Membrane-bound metallo 92.4 24 0.00052 40.2 33.3 65 318-382 44-108 (420)
121 PF06008 Laminin_I: Laminin Do 92.1 20 0.00044 38.7 31.7 36 452-487 173-208 (264)
122 TIGR03017 EpsF chain length de 92.0 29 0.00063 40.4 24.6 79 213-291 128-208 (444)
123 KOG0946 ER-Golgi vesicle-tethe 91.9 37 0.0008 41.4 31.3 16 538-553 864-879 (970)
124 KOG0964 Structural maintenance 91.7 43 0.00094 41.7 65.2 43 823-865 1025-1075(1200)
125 PRK09039 hypothetical protein; 91.5 28 0.0006 39.2 24.3 58 304-361 45-102 (343)
126 KOG0978 E3 ubiquitin ligase in 91.5 40 0.00087 41.0 60.8 41 693-733 497-537 (698)
127 TIGR03185 DNA_S_dndD DNA sulfu 91.3 44 0.00096 41.1 38.3 73 338-413 207-279 (650)
128 COG1340 Uncharacterized archae 91.3 25 0.00053 38.2 37.9 15 538-552 230-244 (294)
129 PRK01156 chromosome segregatio 91.2 55 0.0012 42.0 74.5 9 93-101 37-45 (895)
130 KOG1899 LAR transmembrane tyro 91.2 38 0.00081 40.0 21.7 69 302-370 136-204 (861)
131 KOG0804 Cytoplasmic Zn-finger 90.7 15 0.00033 41.5 17.7 13 122-134 147-159 (493)
132 PF14662 CCDC155: Coiled-coil 90.7 21 0.00045 36.2 26.3 12 451-462 177-188 (193)
133 PHA02562 46 endonuclease subun 90.6 46 0.001 40.1 35.6 21 261-281 174-194 (562)
134 KOG1003 Actin filament-coating 90.1 23 0.0005 35.8 24.4 100 632-732 75-177 (205)
135 KOG0979 Structural maintenance 90.0 62 0.0013 40.6 55.4 61 772-832 857-920 (1072)
136 COG5059 KIP1 Kinesin-like prot 89.9 0.08 1.7E-06 63.4 -0.5 81 104-191 486-566 (568)
137 PF05622 HOOK: HOOK protein; 89.9 0.2 4.3E-06 62.2 2.8 26 707-732 562-588 (713)
138 smart00787 Spc7 Spc7 kinetocho 89.6 37 0.00081 37.6 23.2 132 417-560 125-256 (312)
139 KOG0804 Cytoplasmic Zn-finger 89.6 25 0.00053 40.0 18.1 13 198-210 210-222 (493)
140 KOG0978 E3 ubiquitin ligase in 89.5 59 0.0013 39.6 56.7 29 762-790 508-536 (698)
141 PF05483 SCP-1: Synaptonemal c 89.1 58 0.0013 39.0 74.5 74 526-600 346-419 (786)
142 PLN02939 transferase, transfer 88.7 80 0.0017 40.2 24.7 38 431-468 354-391 (977)
143 PF15254 CCDC14: Coiled-coil d 88.5 68 0.0015 39.1 25.6 91 321-414 429-519 (861)
144 PF12325 TMF_TATA_bd: TATA ele 88.5 22 0.00048 33.5 15.8 29 466-494 91-119 (120)
145 TIGR01005 eps_transp_fam exopo 88.4 79 0.0017 39.7 25.1 76 214-289 152-229 (754)
146 KOG1937 Uncharacterized conser 88.3 51 0.0011 37.5 37.0 79 336-418 289-367 (521)
147 KOG4643 Uncharacterized coiled 88.3 79 0.0017 39.6 61.7 41 693-733 503-543 (1195)
148 KOG2129 Uncharacterized conser 88.1 50 0.0011 37.1 22.4 65 336-400 161-226 (552)
149 PF10168 Nup88: Nuclear pore c 88.1 43 0.00094 41.5 21.0 32 315-346 561-592 (717)
150 PF08614 ATG16: Autophagy prot 87.7 9.6 0.00021 39.1 13.0 25 261-285 67-91 (194)
151 PRK10929 putative mechanosensi 87.6 1E+02 0.0022 40.1 41.7 26 393-418 212-237 (1109)
152 PF05557 MAD: Mitotic checkpoi 87.4 4.8 0.0001 50.1 12.6 18 644-661 565-582 (722)
153 PF06705 SF-assemblin: SF-asse 87.1 46 0.00099 35.6 37.1 22 392-413 88-109 (247)
154 KOG4360 Uncharacterized coiled 86.9 31 0.00066 39.8 16.9 20 845-864 534-553 (596)
155 PF14643 DUF4455: Domain of un 86.8 74 0.0016 37.6 53.4 68 702-773 337-404 (473)
156 PF15397 DUF4618: Domain of un 86.7 48 0.001 35.4 29.5 36 377-412 69-104 (258)
157 KOG1853 LIS1-interacting prote 86.3 46 0.001 34.8 20.1 25 393-417 137-161 (333)
158 TIGR01005 eps_transp_fam exopo 86.3 94 0.002 39.0 23.3 19 174-192 78-96 (754)
159 PF15397 DUF4618: Domain of un 85.7 54 0.0012 35.0 28.7 21 832-852 235-255 (258)
160 PF00769 ERM: Ezrin/radixin/mo 85.2 57 0.0012 34.8 18.2 9 320-328 34-42 (246)
161 PF04849 HAP1_N: HAP1 N-termin 85.1 64 0.0014 35.4 29.1 52 505-557 253-304 (306)
162 PRK10698 phage shock protein P 85.1 54 0.0012 34.5 19.5 101 641-745 27-134 (222)
163 KOG0250 DNA repair protein RAD 84.9 1.2E+02 0.0027 38.5 66.3 37 96-132 76-117 (1074)
164 PF09755 DUF2046: Uncharacteri 84.9 65 0.0014 35.3 37.1 26 373-398 104-129 (310)
165 PF12325 TMF_TATA_bd: TATA ele 84.7 35 0.00077 32.1 15.3 23 259-281 14-36 (120)
166 PF14662 CCDC155: Coiled-coil 84.5 49 0.0011 33.5 28.2 65 344-408 64-128 (193)
167 KOG1899 LAR transmembrane tyro 84.5 95 0.0021 36.8 22.6 36 304-339 110-145 (861)
168 PF08317 Spc7: Spc7 kinetochor 84.2 76 0.0016 35.4 29.7 95 417-522 130-224 (325)
169 PF09728 Taxilin: Myosin-like 84.1 74 0.0016 35.3 43.9 29 530-558 217-245 (309)
170 TIGR01843 type_I_hlyD type I s 83.7 89 0.0019 35.9 23.9 20 262-281 82-101 (423)
171 PF05010 TACC: Transforming ac 83.6 59 0.0013 33.7 30.1 32 387-418 74-105 (207)
172 KOG0999 Microtubule-associated 83.0 1E+02 0.0022 36.0 52.7 77 339-415 56-133 (772)
173 PF06548 Kinesin-related: Kine 82.7 96 0.0021 35.5 34.5 95 408-502 275-378 (488)
174 PF15254 CCDC14: Coiled-coil d 82.7 1.3E+02 0.0028 36.9 23.1 47 392-438 511-557 (861)
175 PF08614 ATG16: Autophagy prot 82.6 24 0.00053 36.1 13.2 40 341-380 110-149 (194)
176 PF05622 HOOK: HOOK protein; 82.5 0.4 8.7E-06 59.5 0.0 18 267-284 266-283 (713)
177 KOG0963 Transcription factor/C 82.4 1.2E+02 0.0025 36.3 46.2 46 641-686 295-340 (629)
178 PF14915 CCDC144C: CCDC144C pr 82.3 79 0.0017 34.3 42.4 49 530-579 208-256 (305)
179 PF06785 UPF0242: Uncharacteri 82.1 84 0.0018 34.4 22.0 55 363-417 87-141 (401)
180 KOG0962 DNA repair protein RAD 82.0 1.8E+02 0.0039 38.1 59.8 110 696-817 571-680 (1294)
181 PF09738 DUF2051: Double stran 81.9 35 0.00075 37.5 14.5 61 316-376 81-141 (302)
182 PF07464 ApoLp-III: Apolipopho 81.7 43 0.00093 33.0 13.6 39 452-490 44-82 (155)
183 COG3883 Uncharacterized protei 81.0 85 0.0018 33.7 27.5 31 345-375 71-101 (265)
184 TIGR03185 DNA_S_dndD DNA sulfu 80.9 1.5E+02 0.0033 36.5 41.8 14 802-815 581-594 (650)
185 TIGR00634 recN DNA repair prot 80.6 1.4E+02 0.0031 36.0 25.9 9 95-103 38-46 (563)
186 PF10473 CENP-F_leu_zip: Leuci 80.3 59 0.0013 31.5 21.3 34 293-326 5-38 (140)
187 PF15450 DUF4631: Domain of un 80.0 1.3E+02 0.0028 35.2 54.1 186 648-852 304-490 (531)
188 KOG4302 Microtubule-associated 79.6 1.6E+02 0.0034 36.0 33.4 27 471-497 247-273 (660)
189 PF04111 APG6: Autophagy prote 79.5 39 0.00084 37.5 14.2 23 392-414 109-131 (314)
190 KOG4403 Cell surface glycoprot 79.3 1.2E+02 0.0026 34.4 19.6 94 304-399 241-342 (575)
191 PF15450 DUF4631: Domain of un 79.0 1.4E+02 0.003 35.0 59.4 33 250-284 4-36 (531)
192 PF15066 CAGE1: Cancer-associa 78.7 1.3E+02 0.0028 34.5 29.7 12 39-50 95-106 (527)
193 PF10146 zf-C4H2: Zinc finger- 78.3 96 0.0021 32.8 16.3 42 373-414 30-71 (230)
194 PF15290 Syntaphilin: Golgi-lo 78.2 1E+02 0.0022 33.0 16.3 35 348-382 118-152 (305)
195 PF05010 TACC: Transforming ac 78.0 91 0.002 32.3 30.6 18 393-410 41-58 (207)
196 PF10481 CENP-F_N: Cenp-F N-te 77.4 1.1E+02 0.0023 32.8 15.7 31 387-417 100-130 (307)
197 PRK11281 hypothetical protein; 77.4 2.4E+02 0.0052 36.9 40.5 27 392-418 230-256 (1113)
198 PF04111 APG6: Autophagy prote 75.9 54 0.0012 36.4 14.0 23 391-413 66-88 (314)
199 PF15066 CAGE1: Cancer-associa 75.4 1.6E+02 0.0035 33.9 28.8 26 531-556 491-516 (527)
200 PF08317 Spc7: Spc7 kinetochor 75.4 1.4E+02 0.0031 33.3 28.0 11 264-274 78-88 (325)
201 COG0419 SbcC ATPase involved i 74.6 2.6E+02 0.0057 36.0 72.4 7 833-839 847-853 (908)
202 COG4026 Uncharacterized protei 74.0 40 0.00086 34.6 11.0 55 342-396 144-198 (290)
203 PRK10884 SH3 domain-containing 73.9 65 0.0014 33.4 13.1 22 304-325 92-113 (206)
204 COG1842 PspA Phage shock prote 73.9 1.2E+02 0.0027 31.9 20.5 109 624-733 11-126 (225)
205 TIGR00634 recN DNA repair prot 73.6 2.1E+02 0.0046 34.5 28.3 19 482-500 315-333 (563)
206 PF13949 ALIX_LYPXL_bnd: ALIX 73.3 1.5E+02 0.0031 32.4 30.2 29 437-465 202-230 (296)
207 PRK10884 SH3 domain-containing 73.2 69 0.0015 33.2 13.1 24 258-281 90-113 (206)
208 PF10186 Atg14: UV radiation r 72.2 1.5E+02 0.0033 32.2 19.0 17 264-280 23-39 (302)
209 COG1382 GimC Prefoldin, chaper 72.2 87 0.0019 29.4 13.4 41 373-413 68-108 (119)
210 PLN02939 transferase, transfer 71.7 3E+02 0.0064 35.3 31.3 8 588-595 437-444 (977)
211 PRK10869 recombination and rep 71.2 2.4E+02 0.0052 34.0 28.9 9 95-103 38-46 (553)
212 PF12126 DUF3583: Protein of u 70.7 1.2E+02 0.0026 32.7 14.0 102 703-809 3-108 (324)
213 PF04012 PspA_IM30: PspA/IM30 70.7 1.4E+02 0.003 31.1 19.2 92 641-733 26-125 (221)
214 PF10481 CENP-F_N: Cenp-F N-te 70.5 1.6E+02 0.0034 31.6 16.8 25 478-502 162-186 (307)
215 KOG0018 Structural maintenance 70.3 3.1E+02 0.0068 35.0 58.8 65 770-838 848-912 (1141)
216 PF09755 DUF2046: Uncharacteri 68.4 1.9E+02 0.0041 31.8 36.3 32 530-561 172-203 (310)
217 TIGR01843 type_I_hlyD type I s 68.4 2.2E+02 0.0048 32.5 25.1 14 267-280 80-93 (423)
218 PF09738 DUF2051: Double stran 67.8 1.2E+02 0.0027 33.3 14.2 73 293-379 100-172 (302)
219 PF05384 DegS: Sensor protein 67.8 1.3E+02 0.0029 29.8 21.6 39 334-372 28-66 (159)
220 PF04102 SlyX: SlyX; InterPro 67.8 28 0.00062 29.2 7.3 51 303-353 2-52 (69)
221 PRK01156 chromosome segregatio 67.6 3.6E+02 0.0078 34.6 74.9 7 125-131 67-73 (895)
222 PRK02119 hypothetical protein; 66.9 38 0.00083 28.8 8.0 50 302-351 6-55 (73)
223 PRK04325 hypothetical protein; 66.6 40 0.00088 28.8 8.1 50 302-351 6-55 (74)
224 PRK00295 hypothetical protein; 66.3 47 0.001 27.9 8.3 49 303-351 3-51 (68)
225 PRK04406 hypothetical protein; 66.2 50 0.0011 28.3 8.5 49 302-350 8-56 (75)
226 PF03999 MAP65_ASE1: Microtubu 65.3 37 0.00081 41.5 10.8 85 580-667 324-413 (619)
227 PF08826 DMPK_coil: DMPK coile 64.3 73 0.0016 26.2 8.7 46 637-682 10-58 (61)
228 PRK09841 cryptic autophosphory 64.0 2.9E+02 0.0063 34.6 18.4 76 213-288 224-301 (726)
229 PRK11519 tyrosine kinase; Prov 63.7 3E+02 0.0065 34.4 18.5 74 215-288 226-301 (719)
230 PRK02793 phi X174 lysis protei 63.5 51 0.0011 28.0 8.0 49 303-351 6-54 (72)
231 TIGR03007 pepcterm_ChnLen poly 63.3 3.1E+02 0.0068 32.4 21.7 13 178-190 78-90 (498)
232 PRK00736 hypothetical protein; 62.5 55 0.0012 27.5 8.0 48 304-351 4-51 (68)
233 KOG4460 Nuclear pore complex, 62.3 3.2E+02 0.0069 32.2 19.9 97 386-500 585-687 (741)
234 KOG4809 Rab6 GTPase-interactin 62.2 3.2E+02 0.007 32.2 36.3 41 527-567 371-411 (654)
235 KOG0962 DNA repair protein RAD 62.1 4.9E+02 0.011 34.3 63.6 22 837-863 1156-1177(1294)
236 PF07464 ApoLp-III: Apolipopho 60.6 60 0.0013 32.0 9.2 11 538-548 134-144 (155)
237 PRK10361 DNA recombination pro 60.4 3.4E+02 0.0074 31.9 25.7 48 396-443 74-121 (475)
238 PF10168 Nup88: Nuclear pore c 60.1 4.3E+02 0.0093 33.0 23.2 8 206-213 446-453 (717)
239 COG2433 Uncharacterized conser 60.0 2.3E+02 0.0049 33.9 14.9 26 388-413 480-505 (652)
240 PF09304 Cortex-I_coil: Cortex 60.0 1.4E+02 0.0031 27.3 16.0 57 314-370 18-74 (107)
241 PRK00846 hypothetical protein; 59.8 70 0.0015 27.6 8.2 51 302-352 10-60 (77)
242 PF15556 Zwint: ZW10 interacto 59.7 2.1E+02 0.0045 29.2 14.4 34 755-788 132-165 (252)
243 COG4026 Uncharacterized protei 59.7 2.2E+02 0.0048 29.5 18.9 67 320-386 136-202 (290)
244 COG4477 EzrA Negative regulato 59.6 3.6E+02 0.0077 31.9 53.0 28 714-745 469-496 (570)
245 PF11559 ADIP: Afadin- and alp 59.6 1.8E+02 0.0038 28.4 15.9 11 174-184 5-15 (151)
246 PF10498 IFT57: Intra-flagella 59.6 2.4E+02 0.0052 31.9 15.0 14 427-440 194-207 (359)
247 PF09728 Taxilin: Myosin-like 59.2 2.9E+02 0.0062 30.7 43.1 25 533-557 241-265 (309)
248 KOG0979 Structural maintenance 59.0 4.8E+02 0.01 33.2 36.8 11 196-206 558-568 (1072)
249 PTZ00332 paraflagellar rod pro 57.4 3.7E+02 0.008 31.4 27.3 153 667-838 282-436 (589)
250 PF04642 DUF601: Protein of un 56.5 1.9E+02 0.0042 30.4 12.1 65 509-574 152-216 (311)
251 PF06785 UPF0242: Uncharacteri 56.5 3.1E+02 0.0067 30.2 19.8 20 648-667 279-298 (401)
252 COG1382 GimC Prefoldin, chaper 56.3 1.8E+02 0.0038 27.4 13.9 39 363-401 72-110 (119)
253 PF10498 IFT57: Intra-flagella 55.9 3.5E+02 0.0076 30.7 16.4 24 182-205 72-95 (359)
254 PF04899 MbeD_MobD: MbeD/MobD 55.1 48 0.001 28.0 6.4 54 749-802 6-59 (70)
255 COG1340 Uncharacterized archae 54.8 3.2E+02 0.0069 29.9 38.3 30 380-409 46-75 (294)
256 PF10267 Tmemb_cc2: Predicted 54.5 3.9E+02 0.0084 30.7 16.4 91 448-549 228-318 (395)
257 PF06818 Fez1: Fez1; InterPro 53.9 2.7E+02 0.0058 28.7 21.6 23 391-413 82-104 (202)
258 PF10267 Tmemb_cc2: Predicted 53.6 4E+02 0.0086 30.6 15.8 54 659-726 265-318 (395)
259 PLN03188 kinesin-12 family pro 53.4 6.6E+02 0.014 33.1 37.4 90 412-501 1049-1147(1320)
260 KOG1853 LIS1-interacting prote 53.4 3E+02 0.0065 29.1 21.8 20 640-659 159-178 (333)
261 PF09787 Golgin_A5: Golgin sub 53.0 4.7E+02 0.01 31.2 36.4 89 467-560 291-379 (511)
262 PF00769 ERM: Ezrin/radixin/mo 53.0 3.1E+02 0.0068 29.2 18.5 20 394-413 80-99 (246)
263 COG0497 RecN ATPase involved i 52.2 4.9E+02 0.011 31.2 26.9 14 473-486 344-357 (557)
264 PF15556 Zwint: ZW10 interacto 52.2 2.8E+02 0.006 28.4 17.5 81 633-727 53-133 (252)
265 PF13870 DUF4201: Domain of un 52.1 2.6E+02 0.0056 28.0 23.9 64 359-422 47-110 (177)
266 KOG1962 B-cell receptor-associ 51.9 1.8E+02 0.0039 30.3 11.2 12 238-249 57-68 (216)
267 PF07889 DUF1664: Protein of u 51.7 2.2E+02 0.0048 27.1 13.1 23 391-413 98-120 (126)
268 PF10212 TTKRSYEDQ: Predicted 51.6 4.4E+02 0.0096 31.2 15.5 16 176-191 215-230 (518)
269 PF05335 DUF745: Protein of un 50.5 2.9E+02 0.0064 28.2 16.8 54 388-441 115-168 (188)
270 KOG4360 Uncharacterized coiled 49.9 4.9E+02 0.011 30.5 18.9 22 427-448 267-288 (596)
271 PF04582 Reo_sigmaC: Reovirus 49.9 31 0.00067 38.0 5.7 24 388-411 111-134 (326)
272 PF09403 FadA: Adhesion protei 49.5 2.4E+02 0.0052 26.9 13.5 96 445-557 26-121 (126)
273 PF10234 Cluap1: Clusterin-ass 49.4 3.7E+02 0.0081 29.0 15.2 13 16-28 19-31 (267)
274 PF07111 HCR: Alpha helical co 48.5 6E+02 0.013 31.2 73.7 22 261-282 66-87 (739)
275 PF10212 TTKRSYEDQ: Predicted 48.3 3.9E+02 0.0086 31.5 14.4 70 337-409 445-514 (518)
276 PF03962 Mnd1: Mnd1 family; I 48.3 3.2E+02 0.0069 27.9 13.1 27 303-329 67-93 (188)
277 COG4372 Uncharacterized protei 47.8 4.6E+02 0.0099 29.6 40.3 16 178-193 7-22 (499)
278 PF15035 Rootletin: Ciliary ro 47.8 3.2E+02 0.0069 27.8 19.8 31 452-482 147-177 (182)
279 PF04582 Reo_sigmaC: Reovirus 47.5 35 0.00075 37.6 5.6 75 337-411 74-148 (326)
280 TIGR03319 YmdA_YtgF conserved 47.2 5.7E+02 0.012 30.5 23.2 34 837-874 421-454 (514)
281 PF09789 DUF2353: Uncharacteri 47.0 4.4E+02 0.0096 29.2 22.6 16 394-409 138-153 (319)
282 KOG0810 SNARE protein Syntaxin 47.0 4.3E+02 0.0093 29.1 23.3 39 639-677 124-163 (297)
283 KOG0249 LAR-interacting protei 47.0 6.3E+02 0.014 31.0 27.3 38 404-441 92-129 (916)
284 COG2900 SlyX Uncharacterized p 46.1 1.7E+02 0.0037 24.8 8.1 49 302-350 5-53 (72)
285 PTZ00464 SNF-7-like protein; P 44.6 3.9E+02 0.0084 27.9 17.1 34 746-781 105-138 (211)
286 KOG0980 Actin-binding protein 44.4 7.5E+02 0.016 31.1 50.0 403 374-794 336-781 (980)
287 PRK10698 phage shock protein P 43.8 4.1E+02 0.0088 27.9 21.7 46 637-686 91-136 (222)
288 PF08826 DMPK_coil: DMPK coile 43.7 1.8E+02 0.004 23.9 10.1 34 325-358 3-36 (61)
289 PF04394 DUF536: Protein of un 43.4 1.1E+02 0.0023 23.6 6.1 40 312-351 3-42 (45)
290 PF13851 GAS: Growth-arrest sp 43.0 4E+02 0.0086 27.5 30.0 15 316-330 6-20 (201)
291 KOG0249 LAR-interacting protei 43.0 7.2E+02 0.016 30.5 22.3 21 264-284 94-114 (916)
292 PF08172 CASP_C: CASP C termin 42.5 1.7E+02 0.0036 31.4 9.8 29 385-413 103-131 (248)
293 PF12777 MT: Microtubule-bindi 42.1 1.2E+02 0.0027 34.0 9.4 8 182-189 90-97 (344)
294 COG2433 Uncharacterized conser 41.9 5.8E+02 0.013 30.7 14.5 21 397-417 475-495 (652)
295 KOG3091 Nuclear pore complex, 41.5 6.4E+02 0.014 29.5 17.5 32 384-415 413-447 (508)
296 PF06818 Fez1: Fez1; InterPro 41.3 4.2E+02 0.0091 27.4 23.0 95 267-370 9-103 (202)
297 PF09403 FadA: Adhesion protei 40.4 3.3E+02 0.0072 25.9 13.9 33 350-382 89-121 (126)
298 PF12329 TMF_DNA_bd: TATA elem 39.9 2.4E+02 0.0052 24.1 10.7 23 367-389 4-26 (74)
299 PF01540 Lipoprotein_7: Adhesi 39.9 5E+02 0.011 27.7 27.7 23 473-495 212-234 (353)
300 COG3599 DivIVA Cell division i 39.5 4.7E+02 0.01 27.3 13.6 67 738-809 88-154 (212)
301 PF07889 DUF1664: Protein of u 38.7 3.5E+02 0.0077 25.7 13.3 35 460-494 39-73 (126)
302 TIGR01010 BexC_CtrB_KpsE polys 38.5 6.2E+02 0.013 28.5 16.9 104 212-325 126-234 (362)
303 KOG4807 F-actin binding protei 38.1 6.3E+02 0.014 28.5 27.5 269 471-819 294-581 (593)
304 KOG4302 Microtubule-associated 37.4 8.7E+02 0.019 29.9 34.6 95 471-565 160-262 (660)
305 PF14073 Cep57_CLD: Centrosome 37.4 4.5E+02 0.0098 26.6 22.2 19 262-280 5-23 (178)
306 PF13870 DUF4201: Domain of un 37.1 4.4E+02 0.0096 26.4 22.6 89 288-383 39-127 (177)
307 PF04065 Not3: Not1 N-terminal 37.0 5.3E+02 0.012 27.3 17.5 51 386-441 5-55 (233)
308 PF12795 MscS_porin: Mechanose 36.9 5.3E+02 0.011 27.2 23.2 88 261-348 45-135 (240)
309 TIGR01069 mutS2 MutS2 family p 36.5 9.5E+02 0.021 30.3 16.6 11 265-275 385-395 (771)
310 PF10234 Cluap1: Clusterin-ass 36.3 5.9E+02 0.013 27.6 19.9 47 384-430 171-217 (267)
311 PF05278 PEARLI-4: Arabidopsis 36.3 5.8E+02 0.013 27.5 12.5 101 263-366 161-261 (269)
312 KOG2751 Beclin-like protein [S 35.8 7.4E+02 0.016 28.6 19.1 75 196-279 83-161 (447)
313 PF07851 TMPIT: TMPIT-like pro 35.0 4E+02 0.0086 29.8 11.4 26 322-347 7-32 (330)
314 PF03962 Mnd1: Mnd1 family; I 35.0 5.1E+02 0.011 26.4 14.7 36 452-487 116-151 (188)
315 KOG3091 Nuclear pore complex, 34.2 8.3E+02 0.018 28.7 18.6 14 195-208 228-241 (508)
316 PF07794 DUF1633: Protein of u 34.2 4.4E+02 0.0096 30.6 11.6 41 204-244 511-551 (790)
317 KOG1655 Protein involved in va 33.9 5.3E+02 0.012 26.4 13.4 24 261-284 33-56 (218)
318 PF10157 DUF2365: Uncharacteri 33.8 4.7E+02 0.01 25.7 14.6 65 572-657 81-145 (149)
319 KOG3850 Predicted membrane pro 33.3 7.6E+02 0.016 28.0 20.1 105 433-549 262-366 (455)
320 PF15233 SYCE1: Synaptonemal c 33.3 4.3E+02 0.0094 25.1 16.4 14 426-439 91-104 (134)
321 PF13514 AAA_27: AAA domain 33.2 1.3E+03 0.028 30.6 61.2 53 267-325 156-208 (1111)
322 PF09789 DUF2353: Uncharacteri 33.2 7.2E+02 0.016 27.7 26.4 39 381-419 78-116 (319)
323 KOG2010 Double stranded RNA bi 33.1 7E+02 0.015 27.5 12.6 23 221-243 12-34 (405)
324 KOG2196 Nuclear porin [Nuclear 32.8 6.2E+02 0.013 26.8 19.2 19 338-356 83-101 (254)
325 KOG4572 Predicted DNA-binding 32.7 1.1E+03 0.023 29.5 41.5 20 146-165 731-752 (1424)
326 PF09304 Cortex-I_coil: Cortex 32.7 4E+02 0.0086 24.5 15.9 27 387-413 49-75 (107)
327 KOG0992 Uncharacterized conser 32.5 8.8E+02 0.019 28.5 45.5 24 402-425 154-177 (613)
328 PF09731 Mitofilin: Mitochondr 31.7 1E+03 0.022 28.8 25.2 17 195-211 38-54 (582)
329 KOG0972 Huntingtin interacting 31.6 7.1E+02 0.015 27.1 15.5 135 387-537 218-354 (384)
330 PF15030 DUF4527: Protein of u 31.4 6.5E+02 0.014 26.6 15.2 77 304-380 22-98 (277)
331 PRK06569 F0F1 ATP synthase sub 31.4 5.2E+02 0.011 25.5 16.1 50 429-481 89-138 (155)
332 PF03915 AIP3: Actin interacti 31.4 8.8E+02 0.019 28.2 18.6 32 341-372 247-278 (424)
333 KOG4593 Mitotic checkpoint pro 31.4 1.1E+03 0.023 29.1 60.6 36 530-565 378-413 (716)
334 PF09325 Vps5: Vps5 C terminal 31.4 6.1E+02 0.013 26.3 26.9 69 645-713 163-231 (236)
335 KOG3564 GTPase-activating prot 31.1 5.1E+02 0.011 30.1 11.5 54 318-371 27-80 (604)
336 KOG2129 Uncharacterized conser 31.1 8.5E+02 0.018 27.8 28.8 13 505-517 258-270 (552)
337 PF15188 CCDC-167: Coiled-coil 30.9 2.7E+02 0.0059 24.5 7.4 55 263-317 7-62 (85)
338 KOG2629 Peroxisomal membrane a 30.3 5.6E+02 0.012 27.9 11.1 64 295-361 119-182 (300)
339 PF14988 DUF4515: Domain of un 30.3 6.4E+02 0.014 26.2 28.1 43 448-490 80-122 (206)
340 COG3074 Uncharacterized protei 30.2 3.3E+02 0.0072 22.8 10.1 29 304-332 10-38 (79)
341 TIGR03752 conj_TIGR03752 integ 30.1 6.2E+02 0.014 29.6 12.2 20 262-281 60-79 (472)
342 PRK10869 recombination and rep 29.2 1.1E+03 0.023 28.5 29.6 14 634-647 432-445 (553)
343 TIGR01069 mutS2 MutS2 family p 28.8 1.3E+03 0.028 29.2 16.5 8 194-201 352-359 (771)
344 TIGR02231 conserved hypothetic 28.5 5.6E+02 0.012 30.6 12.5 21 261-281 71-91 (525)
345 PHA03332 membrane glycoprotein 28.4 1.4E+03 0.03 29.6 17.5 126 368-496 884-1011(1328)
346 PF10205 KLRAQ: Predicted coil 27.8 4.7E+02 0.01 23.9 11.1 26 354-379 19-44 (102)
347 PF07798 DUF1640: Protein of u 27.0 6.6E+02 0.014 25.2 21.4 7 403-409 87-93 (177)
348 PRK11281 hypothetical protein; 26.6 1.6E+03 0.035 29.7 44.7 18 648-665 438-455 (1113)
349 PF04799 Fzo_mitofusin: fzo-li 26.6 4.1E+02 0.0089 26.7 8.8 36 429-464 103-138 (171)
350 PF01920 Prefoldin_2: Prefoldi 26.2 4.7E+02 0.01 23.3 13.3 37 375-411 62-98 (106)
351 PF06657 Cep57_MT_bd: Centroso 26.0 4.4E+02 0.0094 22.9 8.6 57 260-325 16-77 (79)
352 PF06156 DUF972: Protein of un 25.6 4.5E+02 0.0097 24.2 8.4 25 305-329 8-32 (107)
353 PF07106 TBPIP: Tat binding pr 25.3 3.3E+02 0.0072 27.0 8.3 61 312-372 72-134 (169)
354 KOG4593 Mitotic checkpoint pro 25.3 1.3E+03 0.029 28.3 57.6 10 185-194 9-18 (716)
355 PF03915 AIP3: Actin interacti 25.3 1.1E+03 0.024 27.3 17.9 35 452-487 281-315 (424)
356 KOG2991 Splicing regulator [RN 25.2 8.5E+02 0.018 25.9 21.9 67 576-656 174-247 (330)
357 TIGR03017 EpsF chain length de 24.9 1.1E+03 0.024 27.2 25.6 16 176-191 75-90 (444)
358 PRK10361 DNA recombination pro 24.8 1.2E+03 0.026 27.5 26.5 22 789-810 391-412 (475)
359 PLN03229 acetyl-coenzyme A car 24.8 1.4E+03 0.031 28.4 27.1 18 264-281 432-449 (762)
360 PRK00409 recombination and DNA 24.5 1.5E+03 0.033 28.6 17.9 16 225-240 334-349 (782)
361 PF08647 BRE1: BRE1 E3 ubiquit 24.4 5.2E+02 0.011 23.2 13.4 51 359-409 29-79 (96)
362 PF07111 HCR: Alpha helical co 24.1 1.4E+03 0.031 28.1 63.2 78 376-453 243-324 (739)
363 PF05266 DUF724: Protein of un 23.9 7.9E+02 0.017 25.1 16.4 14 241-254 18-31 (190)
364 KOG4438 Centromere-associated 23.5 1.2E+03 0.025 26.9 41.0 27 532-558 329-355 (446)
365 COG3105 Uncharacterized protei 23.1 2.9E+02 0.0062 26.2 6.5 46 667-716 38-83 (138)
366 KOG0982 Centrosomal protein Nu 23.0 1.2E+03 0.026 26.9 30.6 7 621-627 480-486 (502)
367 PF05911 DUF869: Plant protein 22.8 1.6E+03 0.035 28.3 58.9 140 262-412 18-157 (769)
368 KOG2077 JNK/SAPK-associated pr 22.6 4.9E+02 0.011 30.9 9.6 97 397-493 55-157 (832)
369 PF04859 DUF641: Plant protein 22.4 7E+02 0.015 23.9 11.4 107 260-384 11-117 (131)
370 KOG1962 B-cell receptor-associ 22.4 9E+02 0.02 25.3 11.6 10 212-221 40-49 (216)
371 PF09787 Golgin_A5: Golgin sub 21.9 1.4E+03 0.03 27.2 36.4 20 263-282 118-137 (511)
372 KOG2991 Splicing regulator [RN 21.8 9.9E+02 0.021 25.5 20.8 14 402-415 235-248 (330)
373 PRK09841 cryptic autophosphory 21.8 1.6E+03 0.035 28.0 17.9 23 337-359 271-293 (726)
374 PF09744 Jnk-SapK_ap_N: JNK_SA 21.8 7.9E+02 0.017 24.3 17.1 52 397-448 51-102 (158)
375 PF04012 PspA_IM30: PspA/IM30 21.7 9E+02 0.02 25.0 23.3 46 637-682 72-117 (221)
376 PF02994 Transposase_22: L1 tr 21.6 2.8E+02 0.0061 31.6 7.7 130 308-444 58-188 (370)
377 KOG4460 Nuclear pore complex, 21.5 1.4E+03 0.031 27.2 18.6 14 472-485 677-690 (741)
378 TIGR03752 conj_TIGR03752 integ 21.1 1.1E+03 0.024 27.6 12.2 27 387-413 64-90 (472)
379 PF02183 HALZ: Homeobox associ 20.9 3.7E+02 0.008 20.6 5.7 28 315-342 8-35 (45)
380 PF05266 DUF724: Protein of un 20.9 9.1E+02 0.02 24.7 16.1 42 343-384 127-168 (190)
381 COG4913 Uncharacterized protei 20.9 1.7E+03 0.036 27.7 31.3 36 391-426 707-742 (1104)
382 PF10805 DUF2730: Protein of u 20.1 6.8E+02 0.015 22.9 9.8 54 306-359 36-91 (106)
No 1
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2e-127 Score=1119.58 Aligned_cols=892 Identities=51% Similarity=0.732 Sum_probs=854.7
Q ss_pred CCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhcCCeEEEEEEEEEEEcCceeecCCCCCCC-cccccCCCCCeeEEecCC
Q 002577 1 MEGGARKKNGEFPSDAGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLLALEETS-KFVDDKSKKPIALMEDGK 79 (906)
Q Consensus 1 m~G~~~~~~g~~~~~~Giipr~~~~lF~~~~~~~~~~~v~~S~~Eiyne~v~DLL~~~~~~-~~~~~~~~~~l~i~e~~~ 79 (906)
|+||.+..+|..|+++|||||++.+||+.++..+.+|+|+|||+|+|||+|+|||+|.... +.......+++. +++
T Consensus 146 MeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~~~---~~k 222 (1041)
T KOG0243|consen 146 MEGGERKKNGELPSEAGIIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDSTIV---DGK 222 (1041)
T ss_pred eecCcccccCCCCccCCcchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCccccccccccccCCccc---CCc
Confidence 8888888889999999999999999999999999999999999999999999999998764 333333333333 789
Q ss_pred CCeEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCCCcceEEeeeccccccCCcc
Q 002577 80 GGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSEN 159 (906)
Q Consensus 80 ~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGsE~ 159 (906)
|||+|+||.+++|+++.|++.+|.+|..+|++|+|.||++|||||+||+|+||+++.++.|++++++|||+||||||||+
T Consensus 223 ggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geelvK~GKLNLVDLAGSEN 302 (1041)
T KOG0243|consen 223 GGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEELVKIGKLNLVDLAGSEN 302 (1041)
T ss_pred CcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhhHhhcccceeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhcCCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHHHHHHHH
Q 002577 160 ISRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLD 239 (906)
Q Consensus 160 ~~~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~~~~~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~~~~eTlsTL~ 239 (906)
++++|+.+.|++|||.||+||+||||||+||+++++|||||+|||||||||||||++||||||||||+..+++||+|||.
T Consensus 303 I~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLE 382 (1041)
T KOG0243|consen 303 ISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLE 382 (1041)
T ss_pred ccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCccccccchhccHHHHhHHHHHHHHHHHHHHHHHHhhcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 240 YAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDK 319 (906)
Q Consensus 240 fa~rak~i~n~p~~n~~~~~~~~ik~l~~Ei~~Lk~el~~~r~kn~~~~~~e~~~~~e~e~~~~~eki~~le~~l~~~e~ 319 (906)
||.|||+|+|+|++|+.++++.++|+|+.||++||.+|.++|++||||+++++|.+++.+++.+.++|++++..++.+++
T Consensus 383 YA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~ 462 (1041)
T KOG0243|consen 383 YAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEK 462 (1041)
T ss_pred HHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 320 QLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELE 399 (906)
Q Consensus 320 ~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l~~~e~~l~~~~~~L~~~l~ 399 (906)
++.++++.|..+...+..|..++++++.+|......+..+++.+.+++..|++++++++++...+..+..++..++..++
T Consensus 463 ~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~ 542 (1041)
T KOG0243|consen 463 QLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLE 542 (1041)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 002577 400 NAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGR 479 (906)
Q Consensus 400 ~~~~di~~L~~klerk~~~~~~n~~~~~~~~~eL~~~~~~l~~~i~~~~~qqe~el~~l~~~~~~~~~~~~~~l~eL~~k 479 (906)
..+.++.+|+.+|+++......|+.....|+.+|...+..+..++.....++...+..+...+++|+..+...++.++.+
T Consensus 543 ~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~s~~~~~l~~~~~~~~s~~s~~~~~~e~~~t~ 622 (1041)
T KOG0243|consen 543 ESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLHGLVASSSSQQISQLTTMLAQMESFLSAKSKATEIMKTK 622 (1041)
T ss_pred HHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHhhhhccchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 480 LGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQ 559 (906)
Q Consensus 480 ~~~~~~~~~~qie~l~~~~~~l~k~~~~~le~l~~~~~s~~~~~~k~l~~~~~e~~~~~e~l~~~l~~~~~e~~~l~~q~ 559 (906)
.....+.+++.++.++.....+++.+...++.+.+..-.++.++...+......+..++++++..++.++..+..+.+|+
T Consensus 623 ~~~~r~~~~~~~e~~q~~~~~~k~~~~s~l~~i~s~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~q~~~~~l~~~qe 702 (1041)
T KOG0243|consen 623 ISKDRDILSEVLESLQQLQEVLKKDSESCLEVINSSITSSINELESMLETIANTADDLLQNISSRLSNQQEILSLFANQE 702 (1041)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Q 002577 560 REAHSRAVENARSVSKVTVNFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKKFEESAANEERQLLEKVAELLASSNARK 639 (906)
Q Consensus 560 ~e~~~~~le~~~~~~~~~~~~~~~l~~~~~~l~~~leee~~~~~~~~~~~~~~~~e~~~~e~~~l~~~i~~ll~~~~~rq 639 (906)
...+..+....+.++.....|++++..++..+.....+.+..+...++.|++.|+. ...+.++++++++.++.++..|+
T Consensus 703 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~e~~~~~~q~~ 781 (1041)
T KOG0243|consen 703 LQELVLSQDSAQELSELTSTFFQTLDNQAEKLTNLFSEANISLSQKLSSFQKKFES-IAEDEKQLVEDIKELLSSHDQRN 781 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHhhhHHh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999999999999999 66799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhHHhhhHhhhhhhHHHHHHHHHHHHHHHHHH
Q 002577 640 KQLVQMAVQDLRESASSRTSQLQKEMSTMQDSTFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVLQNCLKQAKMGA 719 (906)
Q Consensus 640 k~~l~~~~~~l~~~~~~~~e~leee~~~lq~~~s~~~~e~~~~~~k~E~~~~~~~~~~ee~k~~l~~~lq~~~~~~~~~~ 719 (906)
...+..++..++.-.......+.+.+..|+.....++..|+.+..+.+.........+++.+..|...++.|.+.+++..
T Consensus 782 ~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 861 (1041)
T KOG0243|consen 782 NELLDIALQTLRSAVNSRESNLTESVSVMQNLSDDLKTIWQTLGKQNENHHNEVLSAIEEKQQAMKSVLKELLENAESQV 861 (1041)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHhhHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhHhHHHHHHchHHhhHHHHHHHHhhHHHHHHhHHHhhHHHHHHHHhHHhhhHHHhhhhhhhhh
Q 002577 720 QQWRTAQESLLNLEKNNVAAVDSIVRGGMEANQNIHARFSSAVSTALQDADVADSNLLTSIDYSLQLDQDACANLNSMIV 799 (906)
Q Consensus 720 ~k~~~~eks~~~L~~~~~~eldd~~~~~~~~n~~~lekkq~~fd~~~~e~~~~~~~~~~e~d~s~~e~r~~~t~~~~~~~ 799 (906)
.+|..+..+...+-..+++.+++++.+...+|..+.+.+-+.+...+..+.....++.+-.+...........++...+.
T Consensus 862 ~~~~~~~~~lk~~~~~~~~~~~~l~~~~~~~~~k~~~e~~s~~~~~~~~~~~~~~~i~t~~~~~~~~~~~~~~~t~~~~~ 941 (1041)
T KOG0243|consen 862 DECKEAIESLKSLESNHVATLDSLVRGVSEQNKKLQDEFLSLLNSKLNSFDVLTNSIVTPHSILLKLDDDVLPETLVIIS 941 (1041)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHhhhhhhhHHhhHHHHHHHhHHHhhhhhccccccccccccccccccccccchHhhc
Confidence 99999999988887788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhhhhhccccchhHHHHHHhhhhhhhccccCCCCCCCcccc-CcCCCchhhhccCCccHHHHHHhhccccCcc-c
Q 002577 800 PCCGDLRELKGGHYHKIVEITENAGKCLLNEYMVDEPSCSTPRKRS-FNLPSMASIEELRTPAFEELLRSFWDVKSSK-Q 877 (906)
Q Consensus 800 ~~~e~l~~le~~~~~~~~~i~~~~~~~~~~~y~~~~~t~~tp~~~~-~~~p~~~sie~~rt~~~~~ll~~~~~~~~~~-~ 877 (906)
.+.+.+..|..+|..+...|+.+++.|++.+|++|+|++.||.+.. +++||.++|+++++|+.+.++++++..+.+. .
T Consensus 942 ~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~p~~~sp~~~s~~~~~s~~~v~~~~~~~~e~~~~~~~~~~~~~~~ 1021 (1041)
T KOG0243|consen 942 PSLELLGELFQDLEHKDRDIENNSGETSLDDYVVDEPSTSSPTKLSRINIPSIGSVESLTTPFSEGTLRESRLNNELEVF 1021 (1041)
T ss_pred ccHHHHHHhhccccchhhhhhhccccccchhhcccccCCCCccccccCCCCCcccccccccCcccccccccccccchhhh
Confidence 9999999999999999999999999999999999999999999999 8999999999999999999999999999872 1
Q ss_pred cCCcccccchhhhhhcccCCCCCCCccCC
Q 002577 878 ANGDLKHIVGAYEAAQSLRDSRVPLTAIN 906 (906)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 906 (906)
..+..+ +....|+||.++|
T Consensus 1022 ~~~~~~----------~~~~~r~~~~~~n 1040 (1041)
T KOG0243|consen 1022 KTGEIK----------GVSNGRPPLSAQN 1040 (1041)
T ss_pred cccccc----------CCCCCCCchhhcc
Confidence 222333 5778999999987
No 2
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.7e-67 Score=591.54 Aligned_cols=272 Identities=48% Similarity=0.684 Sum_probs=254.1
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc--CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCC
Q 002577 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ--HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGK 79 (906)
Q Consensus 2 ~G~~~~~~g~~~~~~Giipr~~~~lF~~~~~~--~~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~i~e~~~ 79 (906)
+|+.++..|..+...|||||++.+||..|+.. ...|.|+|||+|||||.|+|||++.+ ++.+.|+++++
T Consensus 97 sGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~---------~~~l~lre~p~ 167 (574)
T KOG4280|consen 97 SGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVN---------PKGLELREDPK 167 (574)
T ss_pred CCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccC---------cCCceeeEcCC
Confidence 57777777777899999999999999999875 34799999999999999999999765 26799999999
Q ss_pred CCeEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCCCcceEEeeeccccccCCcc
Q 002577 80 GGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSEN 159 (906)
Q Consensus 80 ~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGsE~ 159 (906)
.||||+||+++.|.|++++..+|..|..+|++++|.||..|||||+||+|+|+......++...++.|||||||||||||
T Consensus 168 ~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLagsEr 247 (574)
T KOG4280|consen 168 CGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLAGSER 247 (574)
T ss_pred CceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeeccchhh
Confidence 99999999999999999999999999999999999999999999999999999855555566678899999999999999
Q ss_pred ccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhcCCC-CCCCCCCccccccccccCCCceeeEEeecCCCCCChHHHHHHH
Q 002577 160 ISRSGAREGRAREAGEINKSLLTLGRVINALVEHSG-HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTL 238 (906)
Q Consensus 160 ~~~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~~~~-~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~~~~eTlsTL 238 (906)
..++|+.|.|++||++||+||++||+||+||+++.. ||||||||||+||||||||||||+|||||||+..|++||++||
T Consensus 248 ~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTL 327 (574)
T KOG4280|consen 248 QSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTL 327 (574)
T ss_pred hcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHH
Confidence 999999999999999999999999999999999877 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCccccccchhccHHHHhHHHHHHHHHHHHHHHHHHhh
Q 002577 239 DYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREK 283 (906)
Q Consensus 239 ~fa~rak~i~n~p~~n~~~~~~~~ik~l~~Ei~~Lk~el~~~r~k 283 (906)
+||+|||.|+|+|.||.++ +...++.|+.+|..|+.++......
T Consensus 328 rfA~Rak~I~nk~~ined~-~~~~~~~lq~ei~~Lk~~l~~~~~~ 371 (574)
T KOG4280|consen 328 RFAQRAKAIKNKPVINEDP-KDALLRELQEEIERLKKELDPGGSP 371 (574)
T ss_pred HHHHHHHHhhccccccCCc-chhhHHHHHHHHHHHHHhhccccCc
Confidence 9999999999999999986 5788999999999999999876543
No 3
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.4e-67 Score=597.59 Aligned_cols=311 Identities=37% Similarity=0.546 Sum_probs=265.5
Q ss_pred CCCCCCCCCC-CCCCCCcHHHHHHHHHHHHhhc---CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEec
Q 002577 2 EGGARKKNGE-FPSDAGVIPRAVKQIFDILEAQ---HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMED 77 (906)
Q Consensus 2 ~G~~~~~~g~-~~~~~Giipr~~~~lF~~~~~~---~~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~i~e~ 77 (906)
+|++|+..|. .|.++|||||+|++||.++... +..|+|.|||+|||||.|+|||+. ++++++|+|+|+
T Consensus 99 SGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~--------p~~kg~LRVREH 170 (1221)
T KOG0245|consen 99 SGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNA--------PKSKGGLRVREH 170 (1221)
T ss_pred CCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhC--------CCCCCCceeecc
Confidence 4777777664 3689999999999999999764 348999999999999999999983 124679999999
Q ss_pred CCCCeEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCC-CcceEEeeeccccccC
Q 002577 78 GKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEG-EEMIKCGKLNLVDLAG 156 (906)
Q Consensus 78 ~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~-~~~~~~skl~lVDLAG 156 (906)
|..|+||.+|+.+.|+|+.|+..+|..|++.|++|+|.||+.|||||+||+|++.++.....+ -...++|||+||||||
T Consensus 171 P~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SKIsLVDLAG 250 (1221)
T KOG0245|consen 171 PILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSKISLVDLAG 250 (1221)
T ss_pred CccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeeeeeEEeccC
Confidence 999999999999999999999999999999999999999999999999999999988765544 3456899999999999
Q ss_pred CccccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhcCC-------CCCCCCCCccccccccccCCCceeeEEeecCCCCC
Q 002577 157 SENISRSGAREGRAREAGEINKSLLTLGRVINALVEHS-------GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIH 229 (906)
Q Consensus 157 sE~~~~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~~~-------~~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~ 229 (906)
|||+..+|+.|.|++||.+||+||+|||+||.||++.+ .+||||||.||+||++.||||+||+|||+|||+..
T Consensus 251 SERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdi 330 (1221)
T KOG0245|consen 251 SERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADI 330 (1221)
T ss_pred cccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhhhccChhhc
Confidence 99999999999999999999999999999999999743 48999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhccCccccccchhccHHHHhHHHHHHHHHHHHHHHHHHhhcCC-cCCchhhHHHHHHHHHHHHHHH
Q 002577 230 CLEETLSTLDYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGI-YIPRDRYLQEEAEKKAMAEKIE 308 (906)
Q Consensus 230 ~~~eTlsTL~fa~rak~i~n~p~~n~~~~~~~~ik~l~~Ei~~Lk~el~~~r~kn~~-~~~~e~~~~~e~e~~~~~eki~ 308 (906)
||+||||||+||.|||+|+|.|+||+++ +..+|++|.+|+.+|+..+.......-. ..++... .....++
T Consensus 331 NyeETLSTLRYAdRAK~Iv~~avVNEdp-naKLIRELreEv~rLksll~~~~~~~~~~~~~p~~~--------~~~~~~e 401 (1221)
T KOG0245|consen 331 NYEETLSTLRYADRAKQIVNNAVVNEDP-NAKLIRELREEVARLKSLLRAQGLGDIAVEGSPSAL--------LSQPEIE 401 (1221)
T ss_pred ChHHHHHHHHHhhHhhhhhccceeCCCc-cHHHHHHHHHHHHHHHHHHhccccccccccCCcccc--------cccccHH
Confidence 9999999999999999999999999996 7889999999999999987654321100 0000000 1122344
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002577 309 RMELESESKDKQLMELQELYN 329 (906)
Q Consensus 309 ~le~~l~~~e~~l~~L~~~~~ 329 (906)
.+...+...++.+.+|++.++
T Consensus 402 ~~~~~L~E~Ek~mael~etW~ 422 (1221)
T KOG0245|consen 402 ELRERLQETEKIMAELNETWE 422 (1221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555666677777776665
No 4
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=3.7e-62 Score=534.11 Aligned_cols=259 Identities=42% Similarity=0.630 Sum_probs=234.1
Q ss_pred CCCCCCCCC--CCCCCCcHHHHHHHHHHHHhhcCC--eEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecC
Q 002577 3 GGARKKNGE--FPSDAGVIPRAVKQIFDILEAQHA--EYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (906)
Q Consensus 3 G~~~~~~g~--~~~~~Giipr~~~~lF~~~~~~~~--~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~i~e~~ 78 (906)
|+.++..|. .+...|||||++++||+.|...+. +|.|+|||||||+|+|+|||+|. +.++.+++|.
T Consensus 95 GKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~----------k~nlsvheDK 164 (607)
T KOG0240|consen 95 GKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPE----------KTNLSVHEDK 164 (607)
T ss_pred CcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcc----------cCCceeeccc
Confidence 444454442 345779999999999999987654 99999999999999999999864 4689999999
Q ss_pred CCCeEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCCCcceEEeeeccccccCCc
Q 002577 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSE 158 (906)
Q Consensus 79 ~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGsE 158 (906)
..+++|+|+++..|.++++++.+|+.|..+|+++.|.||.+|||||+||+|+|.+..... ...++|+|+||||||||
T Consensus 165 ~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~---~~~~~gkLyLVDLaGSE 241 (607)
T KOG0240|consen 165 NRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVED---KRKLSGKLYLVDLAGSE 241 (607)
T ss_pred CCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccc---hhhccccEEEEEccccc
Confidence 999999999999999999999999999999999999999999999999999998865433 23578999999999999
Q ss_pred cccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhcC-CCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHHHHHH
Q 002577 159 NISRSGAREGRAREAGEINKSLLTLGRVINALVEH-SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLST 237 (906)
Q Consensus 159 ~~~~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~~-~~~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~~~~eTlsT 237 (906)
+++++|+.|.-+.||++||+||.|||+||+||+++ ..|||||||||||||+|+|||||+|.||+||||+..+-.||.+|
T Consensus 242 kvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~ST 321 (607)
T KOG0240|consen 242 KVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKST 321 (607)
T ss_pred ccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccc
Confidence 99999999999999999999999999999999998 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCccccccchhccHHHHhHHHHHHHHHHH
Q 002577 238 LDYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLK 274 (906)
Q Consensus 238 L~fa~rak~i~n~p~~n~~~~~~~~ik~l~~Ei~~Lk 274 (906)
|+|+.|||.|+|.+.+|.........+.|..+-..+.
T Consensus 322 l~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~kd~~~ 358 (607)
T KOG0240|consen 322 LRFGNRAKTIKNTVWVNLELTAEEWKRKLEKKKDKNV 358 (607)
T ss_pred hhhccccccccchhhhhhHhhHHHHHHHHHHHHhHHH
Confidence 9999999999999999998777777777765544443
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=3.9e-60 Score=559.07 Aligned_cols=278 Identities=40% Similarity=0.643 Sum_probs=237.9
Q ss_pred CCCCCCCCCCC---------CCCCCcHHHHHHHHHHHHhhc-------CCeEEEEEEEEEEEcCceeecCCCCCCCcccc
Q 002577 2 EGGARKKNGEF---------PSDAGVIPRAVKQIFDILEAQ-------HAEYSMKVTFLELYNEEISDLLALEETSKFVD 65 (906)
Q Consensus 2 ~G~~~~~~g~~---------~~~~Giipr~~~~lF~~~~~~-------~~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~ 65 (906)
+|+.++..|.. +.++|||||++++||..+... ...|.|+|||||||||.|||||++..
T Consensus 177 SGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~------ 250 (1320)
T PLN03188 177 SGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQ------ 250 (1320)
T ss_pred CCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccccc------
Confidence 46666666642 367899999999999998642 34799999999999999999998542
Q ss_pred cCCCCCeeEEecCCCCeEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecC-CCCCcce
Q 002577 66 DKSKKPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECT-PEGEEMI 144 (906)
Q Consensus 66 ~~~~~~l~i~e~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~-~~~~~~~ 144 (906)
+.+.|++|+.+|++|.||+++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|...... ..+...+
T Consensus 251 ----k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~ 326 (1320)
T PLN03188 251 ----KNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSF 326 (1320)
T ss_pred ----CCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcce
Confidence 46899999999999999999999999999999999999999999999999999999999999865432 2344556
Q ss_pred EEeeeccccccCCccccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhc-----CCCCCCCCCCccccccccccCCCceee
Q 002577 145 KCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVE-----HSGHVPYRDSKLTRLLRDSLGGKTKTC 219 (906)
Q Consensus 145 ~~skl~lVDLAGsE~~~~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~-----~~~~ipyRdSkLT~lL~dsLgg~~kt~ 219 (906)
+.|+|+|||||||||+.++++.|.+++|+++||+||++||+||++|+. +..|||||+||||+||+|+|||||+|+
T Consensus 327 r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTv 406 (1320)
T PLN03188 327 KTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLA 406 (1320)
T ss_pred EEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEE
Confidence 789999999999999999999999999999999999999999999986 346999999999999999999999999
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHhccCccccccchhccHH-----HHhHHHHHHHHHHHHHHHHHHhhcCCcCC
Q 002577 220 IIATVSPSIHCLEETLSTLDYAHRAKNIKNKPEINQKMMKS-----AMIKDLYSEIDRLKQEVYAAREKNGIYIP 289 (906)
Q Consensus 220 ~I~~isp~~~~~~eTlsTL~fa~rak~i~n~p~~n~~~~~~-----~~ik~l~~Ei~~Lk~el~~~r~kn~~~~~ 289 (906)
|||||||+..+++||++||+||.|||+|+|+|.+|..+... .+|+.|..||.+|+........+||.|..
T Consensus 407 MIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~~~p~~~n~~y~t 481 (1320)
T PLN03188 407 MVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKANGNNPTNPNVAYST 481 (1320)
T ss_pred EEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccc
Confidence 99999999999999999999999999999999999875332 24455555555555544333444555544
No 6
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-58 Score=541.19 Aligned_cols=268 Identities=46% Similarity=0.707 Sum_probs=247.0
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc-CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCCC
Q 002577 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ-HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKG 80 (906)
Q Consensus 2 ~G~~~~~~g~~~~~~Giipr~~~~lF~~~~~~-~~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~i~e~~~~ 80 (906)
+|+.++..| .+.+|||||+++.+||+.|... +..|.|+|||+|||||.|||||+|.+ .++.|++|+.+
T Consensus 98 SGKTyTM~G-~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~----------~~L~irED~~~ 166 (675)
T KOG0242|consen 98 SGKTYTMSG-SEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDG----------GDLRLREDSEG 166 (675)
T ss_pred CCCceEEec-cCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCC----------CCceEeEcCCC
Confidence 355555455 4788999999999999999875 45899999999999999999998765 35999999999
Q ss_pred CeEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCCCcceEEeeeccccccCCccc
Q 002577 81 GVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENI 160 (906)
Q Consensus 81 ~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGsE~~ 160 (906)
|++|.||++++|.|++++..+|..|..+|+++.|.+|..|||||+||+|+|........ . +.|+|+|||||||||.
T Consensus 167 gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~---~-~~s~L~lIDLAGSERa 242 (675)
T KOG0242|consen 167 GIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS---S-RVSKLNLIDLAGSERA 242 (675)
T ss_pred CEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc---c-hhheehhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999987654433 1 6799999999999999
Q ss_pred cCCCCchhhHHHHHHhhhhHHHHHHHHHHHhcC--CCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHHHHHHH
Q 002577 161 SRSGAREGRAREAGEINKSLLTLGRVINALVEH--SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTL 238 (906)
Q Consensus 161 ~~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~~--~~~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~~~~eTlsTL 238 (906)
.++++.|.|++||.+||+||++||+||++|+++ ..||||||||||||||++|||||+|+|||||+|+..+|+||.+||
T Consensus 243 s~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL 322 (675)
T KOG0242|consen 243 SRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTL 322 (675)
T ss_pred hhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHH
Confidence 999999999999999999999999999999987 569999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCccccccchhccHHHHhHHHHHHHHHHHHHHHHHHhhc
Q 002577 239 DYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKN 284 (906)
Q Consensus 239 ~fa~rak~i~n~p~~n~~~~~~~~ik~l~~Ei~~Lk~el~~~r~kn 284 (906)
.||+|||.|++++.+|..+....+++.++.+|..|+.++..++.+.
T Consensus 323 ~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~ 368 (675)
T KOG0242|consen 323 KFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKL 368 (675)
T ss_pred HHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999998888899999999999999998876554
No 7
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6e-57 Score=505.75 Aligned_cols=268 Identities=39% Similarity=0.631 Sum_probs=243.8
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc---CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecC
Q 002577 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ---HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (906)
Q Consensus 2 ~G~~~~~~g~~~~~~Giipr~~~~lF~~~~~~---~~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~i~e~~ 78 (906)
+|++++..| ....+|||||.+..||..|... +..|.|.|||+|||||++||||+|.. .+..++++++.
T Consensus 105 sGKsYsmmG-t~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk~--------ssqtlkVrehs 175 (1714)
T KOG0241|consen 105 SGKSYSMMG-TAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPKG--------SSQTLKVREHS 175 (1714)
T ss_pred CCceeEeec-cCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCCC--------CcceeEEeecc
Confidence 456655555 5789999999999999999754 34799999999999999999999876 35789999999
Q ss_pred CCCeEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCC-CCcceEEeeeccccccCC
Q 002577 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPE-GEEMIKCGKLNLVDLAGS 157 (906)
Q Consensus 79 ~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~-~~~~~~~skl~lVDLAGs 157 (906)
--|+||.||++..|+|++++-.++..|.++|++++|.||..|||||+||.|.|.+.-.+.. |...-+.|||.|||||||
T Consensus 176 vlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~SgeKvsklslVDLAgs 255 (1714)
T KOG0241|consen 176 VLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGEKVSKLSLVDLAGS 255 (1714)
T ss_pred cccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchhheeeeeEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999987654443 223347899999999999
Q ss_pred ccccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhcC------CCCCCCCCCccccccccccCCCceeeEEeecCCCCCCh
Q 002577 158 ENISRSGAREGRAREAGEINKSLLTLGRVINALVEH------SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCL 231 (906)
Q Consensus 158 E~~~~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~~------~~~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~~~ 231 (906)
||..++|+.|.|++|+++||+||++||.||.||++. ..+||||||.||+||+|+|||||+|+||+||||+.+||
T Consensus 256 erasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdny 335 (1714)
T KOG0241|consen 256 ERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNY 335 (1714)
T ss_pred cccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccch
Confidence 999999999999999999999999999999999974 35899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCccccccchhccHHHHhHHHHHHHHHHHHHHHH
Q 002577 232 EETLSTLDYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYA 279 (906)
Q Consensus 232 ~eTlsTL~fa~rak~i~n~p~~n~~~~~~~~ik~l~~Ei~~Lk~el~~ 279 (906)
+||+|||+||.|||.|+|...||.++ +...|+++..|++.|..+|..
T Consensus 336 eeTlStLRYadrAkrIvN~avvNedp-narvirElReEve~lr~qL~~ 382 (1714)
T KOG0241|consen 336 EETLSTLRYADRAKRIVNHAVVNEDP-NARVIRELREEVEKLREQLEQ 382 (1714)
T ss_pred HHHHHHHHHHHHHHHhhccccccCCc-hHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999996 667899999999999988865
No 8
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=4.8e-55 Score=489.85 Aligned_cols=248 Identities=68% Similarity=0.978 Sum_probs=230.8
Q ss_pred CCCCCCCCCCC----------CCCCCcHHHHHHHHHHHHhhcCCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCC
Q 002577 2 EGGARKKNGEF----------PSDAGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKP 71 (906)
Q Consensus 2 ~G~~~~~~g~~----------~~~~Giipr~~~~lF~~~~~~~~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~ 71 (906)
+|++++..|.. +..+|||||++.+||+.+...+..|+|+|||+|||||.|+|||++.. ...++
T Consensus 93 SGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~-------~~~~~ 165 (352)
T cd01364 93 TGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQNTEYSVKVSYLELYNEELFDLLSSES-------DLNKP 165 (352)
T ss_pred CCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhccceeEEEEEEEEeeCCeeeeCCCCcc-------ccCcc
Confidence 46666666643 45689999999999999998888999999999999999999998654 13567
Q ss_pred eeEEec--CCCCeEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCCCcceEEeee
Q 002577 72 IALMED--GKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKL 149 (906)
Q Consensus 72 l~i~e~--~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl 149 (906)
+.++++ ..+|++|.|++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+......+...+..|+|
T Consensus 166 l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~~~s~l 245 (352)
T cd01364 166 LRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELVKIGKL 245 (352)
T ss_pred ceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCccEEEEEE
Confidence 999999 589999999999999999999999999999999999999999999999999999988777667777889999
Q ss_pred ccccccCCccccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhcCCCCCCCCCCccccccccccCCCceeeEEeecCCCCC
Q 002577 150 NLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIH 229 (906)
Q Consensus 150 ~lVDLAGsE~~~~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~~~~~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~ 229 (906)
+||||||||+.+++++.+.+.+|+..||+||++|++||.+|+.+..|||||+|+||+||+|+|||||+|+||+||||+..
T Consensus 246 ~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~ 325 (352)
T cd01364 246 NLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIATISPASI 325 (352)
T ss_pred EEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhccCccccccchh
Q 002577 230 CLEETLSTLDYAHRAKNIKNKPEINQK 256 (906)
Q Consensus 230 ~~~eTlsTL~fa~rak~i~n~p~~n~~ 256 (906)
+++||++||+||.||++|+|+|.+|++
T Consensus 326 ~~~eTl~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 326 NLEETLSTLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred cHHHHHHHHHHHHHHhhccCccccCCC
Confidence 999999999999999999999999974
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=5e-55 Score=485.24 Aligned_cols=235 Identities=49% Similarity=0.708 Sum_probs=212.5
Q ss_pred CCCCCCCCCCCC-------CCCCcHHHHHHHHHHHHhhc------CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCC
Q 002577 2 EGGARKKNGEFP-------SDAGVIPRAVKQIFDILEAQ------HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKS 68 (906)
Q Consensus 2 ~G~~~~~~g~~~-------~~~Giipr~~~~lF~~~~~~------~~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~ 68 (906)
+|+.++..|... .++|||||++++||..+... +..|.|+|||+|||||+|||||+|..
T Consensus 86 SGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~--------- 156 (337)
T cd01373 86 SGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTS--------- 156 (337)
T ss_pred CCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCC---------
Confidence 466666666543 46899999999999988643 34799999999999999999997543
Q ss_pred CCCeeEEecCCCCeEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCCCcceEEee
Q 002577 69 KKPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGK 148 (906)
Q Consensus 69 ~~~l~i~e~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~sk 148 (906)
..+.+++++.+|++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|........ ...++.|+
T Consensus 157 -~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~-~~~~~~s~ 234 (337)
T cd01373 157 -RNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKAS-STNIRTSR 234 (337)
T ss_pred -CCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCC-CCcEEEEE
Confidence 4689999999999999999999999999999999999999999999999999999999999987544332 23457899
Q ss_pred eccccccCCccccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhc----CCCCCCCCCCccccccccccCCCceeeEEeec
Q 002577 149 LNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVE----HSGHVPYRDSKLTRLLRDSLGGKTKTCIIATV 224 (906)
Q Consensus 149 l~lVDLAGsE~~~~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~----~~~~ipyRdSkLT~lL~dsLgg~~kt~~I~~i 224 (906)
|+||||||||+..++++.|.+++|++.||+||++|++||.+|++ +..|||||+||||+||+|+|||||+|+|||||
T Consensus 235 l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~v 314 (337)
T cd01373 235 LNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANV 314 (337)
T ss_pred EEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEE
Confidence 99999999999999999999999999999999999999999985 35799999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhccC
Q 002577 225 SPSIHCLEETLSTLDYAHRAKNI 247 (906)
Q Consensus 225 sp~~~~~~eTlsTL~fa~rak~i 247 (906)
||+..+++||++||+||.|||.|
T Consensus 315 sP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 315 SPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred CCCcccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999987
No 10
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=4.5e-55 Score=485.82 Aligned_cols=235 Identities=46% Similarity=0.707 Sum_probs=217.7
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc--CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCC
Q 002577 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ--HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGK 79 (906)
Q Consensus 2 ~G~~~~~~g~~~~~~Giipr~~~~lF~~~~~~--~~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~i~e~~~ 79 (906)
+|+.++..|. +.++|||||++++||+.++.. +..|.|+|||+|||||.|+|||++. .+++.+++|+.
T Consensus 99 SGKTyTm~G~-~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~----------~~~l~i~ed~~ 167 (338)
T cd01370 99 AGKTHTMLGT-DSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPS----------SGPLELREDPN 167 (338)
T ss_pred CCCeEEEcCC-CCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCC----------CCCceEEEcCC
Confidence 4665555664 688999999999999999865 4689999999999999999999864 35799999999
Q ss_pred CCeEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCCCcceEEeeeccccccCCcc
Q 002577 80 GGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSEN 159 (906)
Q Consensus 80 ~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGsE~ 159 (906)
++++|.|++++.|.|+++++.+|..|..+|++++|.+|..|||||+||+|+|.+.............|+|+|||||||||
T Consensus 168 ~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsEr 247 (338)
T cd01370 168 QGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLIDLAGSER 247 (338)
T ss_pred CCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCcc
Confidence 99999999999999999999999999999999999999999999999999998876654344557889999999999999
Q ss_pred ccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhcCC---CCCCCCCCccccccccccCCCceeeEEeecCCCCCChHHHHH
Q 002577 160 ISRSGAREGRAREAGEINKSLLTLGRVINALVEHS---GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLS 236 (906)
Q Consensus 160 ~~~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~~~---~~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~~~~eTls 236 (906)
..++++.|.+++|+..||+||++|++||.+|+.+. .|||||+||||+||+|+|||||+|+||+||||+..+++||++
T Consensus 248 ~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~ 327 (338)
T cd01370 248 ASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHN 327 (338)
T ss_pred ccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHH
Confidence 99999999999999999999999999999999987 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccC
Q 002577 237 TLDYAHRAKNI 247 (906)
Q Consensus 237 TL~fa~rak~i 247 (906)
||+||.|||+|
T Consensus 328 TL~fa~ra~~I 338 (338)
T cd01370 328 TLKYANRAKNI 338 (338)
T ss_pred HHHHHHHhccC
Confidence 99999999987
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=6.6e-54 Score=477.36 Aligned_cols=235 Identities=39% Similarity=0.654 Sum_probs=213.5
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhcCCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCCCC
Q 002577 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKGG 81 (906)
Q Consensus 2 ~G~~~~~~g~~~~~~Giipr~~~~lF~~~~~~~~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~i~e~~~~~ 81 (906)
+|+.++..|. +.++|||||++++||+.+.. |.|+|||+|||||.|||||++.... ...++++.+++|+.++
T Consensus 100 SGKTyTm~G~-~~~~Gli~r~~~~lF~~~~~----~~v~~S~~EIyne~v~DLL~~~~~~----~~~~~~l~i~ed~~~~ 170 (345)
T cd01368 100 SGKTYTMQGS-PGDGGILPRSLDVIFNSIGG----YSVFVSYVEIYNNYIYDLLEDSPSS----TKKRQSLRLREDHNGN 170 (345)
T ss_pred CCCeEEecCC-CCCCchHHHHHHHHHHHHHh----eeEEEEEEEEeCCEeEeCCCCcccc----ccCCCceEEEECCCCC
Confidence 4666666665 58999999999999999876 9999999999999999999876531 1235689999999999
Q ss_pred eEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCC-----CcceEEeeeccccccC
Q 002577 82 VFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEG-----EEMIKCGKLNLVDLAG 156 (906)
Q Consensus 82 ~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~-----~~~~~~skl~lVDLAG 156 (906)
++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+......+ ...+..|+|+||||||
T Consensus 171 ~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~VDLAG 250 (345)
T cd01368 171 MYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAG 250 (345)
T ss_pred EEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCceEEEEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999876544322 2456789999999999
Q ss_pred CccccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhc------CCCCCCCCCCccccccccccCCCceeeEEeecCCCCCC
Q 002577 157 SENISRSGAREGRAREAGEINKSLLTLGRVINALVE------HSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHC 230 (906)
Q Consensus 157 sE~~~~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~------~~~~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~~ 230 (906)
||+..++++.|.+++|++.||+||++|++||.+|++ +..|||||+||||+||+|+|||||+|+||+||||+..+
T Consensus 251 sEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~ 330 (345)
T cd01368 251 SERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASD 330 (345)
T ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhh
Confidence 999999999999999999999999999999999997 46799999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhc
Q 002577 231 LEETLSTLDYAHRAK 245 (906)
Q Consensus 231 ~~eTlsTL~fa~rak 245 (906)
++||++||+||.+|+
T Consensus 331 ~~eTl~tL~fa~~a~ 345 (345)
T cd01368 331 YDETLHVMKFSAIAQ 345 (345)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=2.8e-53 Score=475.63 Aligned_cols=245 Identities=43% Similarity=0.653 Sum_probs=223.0
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc---CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecC
Q 002577 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ---HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (906)
Q Consensus 2 ~G~~~~~~g~~~~~~Giipr~~~~lF~~~~~~---~~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~i~e~~ 78 (906)
+|+.++..|. +.++|||||++++||+.+... +..|+|+|||+|||||.|||||++.. ....++.+++++
T Consensus 100 SGKT~Tm~G~-~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~-------~~~~~l~i~~~~ 171 (356)
T cd01365 100 SGKSYTMMGY-KEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKK-------KNKGNLKVREHP 171 (356)
T ss_pred CCCeEEecCC-CCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCc-------cCCcCceEEECC
Confidence 4666666665 568999999999999999765 34899999999999999999998653 134578999999
Q ss_pred CCCeEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCC-CCcceEEeeeccccccCC
Q 002577 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPE-GEEMIKCGKLNLVDLAGS 157 (906)
Q Consensus 79 ~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~-~~~~~~~skl~lVDLAGs 157 (906)
.+|++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|.+...... +......|+|+|||||||
T Consensus 172 ~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~s~l~~VDLAGs 251 (356)
T cd01365 172 VLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKISLVDLAGS 251 (356)
T ss_pred CCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEEEEEEeeecccc
Confidence 9999999999999999999999999999999999999999999999999999987655432 234567899999999999
Q ss_pred ccccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhcC--------CCCCCCCCCccccccccccCCCceeeEEeecCCCCC
Q 002577 158 ENISRSGAREGRAREAGEINKSLLTLGRVINALVEH--------SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIH 229 (906)
Q Consensus 158 E~~~~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~~--------~~~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~ 229 (906)
|+...++..+.+++|+..||+||++|++||.+|+.+ ..|||||+||||+||+|+|||||+|+||+||||+..
T Consensus 252 Er~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~ 331 (356)
T cd01365 252 ERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADI 331 (356)
T ss_pred cccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcc
Confidence 999999999999999999999999999999999874 479999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhccCccccccc
Q 002577 230 CLEETLSTLDYAHRAKNIKNKPEIN 254 (906)
Q Consensus 230 ~~~eTlsTL~fa~rak~i~n~p~~n 254 (906)
+++||++||+||.|+++|+|.|.+|
T Consensus 332 ~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 332 NYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred cHHHHHHHHHHHHHHhhccCccccC
Confidence 9999999999999999999999987
No 13
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-50 Score=467.88 Aligned_cols=255 Identities=46% Similarity=0.654 Sum_probs=229.8
Q ss_pred CCCcHHHHHHHHHHHHhhcC-CeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCCCCeEEcCcEEEEeC
Q 002577 15 DAGVIPRAVKQIFDILEAQH-AEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKGGVFVRGLEEEIVT 93 (906)
Q Consensus 15 ~~Giipr~~~~lF~~~~~~~-~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~~l~~~~v~ 93 (906)
+.|||||+++.||..+.... ..|.|.|||+|||++.|+|||.|.. .+.++.+++ ++|++.+.|++++.|.
T Consensus 93 ~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~--------~~~~i~~~e-~~g~it~~glte~tv~ 163 (913)
T KOG0244|consen 93 TVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSR--------LKANIKLRE-PKGEITIRGLTEKTVR 163 (913)
T ss_pred cCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhh--------hhhceeccc-cCCceEEEeehHHHHH
Confidence 35999999999999997653 4899999999999999999998543 234577777 7899999999999999
Q ss_pred CHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCCCcceEEeeeccccccCCccccCCCCchhhHHHH
Q 002577 94 TADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSGAREGRAREA 173 (906)
Q Consensus 94 s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGsE~~~~~~~~~~r~~E~ 173 (906)
++.++...|..|...|++++|.||..|||||+||+|++.+..... .....++||+|||||||||.+++++.|.|++|+
T Consensus 164 ~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~--~~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEg 241 (913)
T KOG0244|consen 164 MKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLS--KRSSFCSKLHLVDLAGSERVKKTKAEGDRLKEG 241 (913)
T ss_pred HHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhh--ccchhhhhhheeeccccccccccccchhhhhhc
Confidence 999999999999999999999999999999999999987643322 222457999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHhcCCC--CCCCCCCccccccccccCCCceeeEEeecCCCCCChHHHHHHHHHHHHhccCcccc
Q 002577 174 GEINKSLLTLGRVINALVEHSG--HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKP 251 (906)
Q Consensus 174 ~~iN~SL~~L~~vI~aL~~~~~--~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~~~~eTlsTL~fa~rak~i~n~p 251 (906)
.+||.+|++||+||.||.+... |||||||||||||||+||||+.|+||+||||+..|.+||++||+||.||++|+|+|
T Consensus 242 InIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~ 321 (913)
T KOG0244|consen 242 ININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKP 321 (913)
T ss_pred cCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccc
Confidence 9999999999999999998654 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhccHHHHhHHHHHHHHHHHHHHHHHH
Q 002577 252 EINQKMMKSAMIKDLYSEIDRLKQEVYAAR 281 (906)
Q Consensus 252 ~~n~~~~~~~~ik~l~~Ei~~Lk~el~~~r 281 (906)
.+|.+ +....+..+..+|+.|+.++...+
T Consensus 322 vvN~d-~~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 322 VVNQD-PKSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred ccccc-HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99995 466777888888888888877665
No 14
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=5e-52 Score=461.28 Aligned_cols=237 Identities=47% Similarity=0.720 Sum_probs=217.9
Q ss_pred CCCCCCCCCCC--CCCCCcHHHHHHHHHHHHhhc-CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecC
Q 002577 2 EGGARKKNGEF--PSDAGVIPRAVKQIFDILEAQ-HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (906)
Q Consensus 2 ~G~~~~~~g~~--~~~~Giipr~~~~lF~~~~~~-~~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~i~e~~ 78 (906)
+|++++..|.. +.++|||||++++||..+... +..|.|+|||+|||||.|+|||++.. .+++.+++++
T Consensus 93 SGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~---------~~~l~i~~~~ 163 (333)
T cd01371 93 TGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQ---------KKKLELKERP 163 (333)
T ss_pred CCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCC---------CCceeEEEcC
Confidence 46666666642 348999999999999999765 35899999999999999999998643 3578999999
Q ss_pred CCCeEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCCCcceEEeeeccccccCCc
Q 002577 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSE 158 (906)
Q Consensus 79 ~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGsE 158 (906)
.++++|.|++++.|.|++++..+|..|..+|++++|.+|..|||||+||+|+|........+...+..|+|+||||||||
T Consensus 164 ~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsE 243 (333)
T cd01371 164 DRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLAGSE 243 (333)
T ss_pred CCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999887665545667789999999999999
Q ss_pred cccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhcCCC-CCCCCCCccccccccccCCCceeeEEeecCCCCCChHHHHHH
Q 002577 159 NISRSGAREGRAREAGEINKSLLTLGRVINALVEHSG-HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLST 237 (906)
Q Consensus 159 ~~~~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~~~~-~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~~~~eTlsT 237 (906)
+..+.+..+.+++|+..||+||.+|++||.+|+.+.. |||||+||||+||+|+|||||+|+||+||||+..+++||++|
T Consensus 244 r~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~T 323 (333)
T cd01371 244 RQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLST 323 (333)
T ss_pred cccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHH
Confidence 9999999999999999999999999999999999876 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccC
Q 002577 238 LDYAHRAKNI 247 (906)
Q Consensus 238 L~fa~rak~i 247 (906)
|+||+|||+|
T Consensus 324 L~fa~r~r~I 333 (333)
T cd01371 324 LRYANRAKNI 333 (333)
T ss_pred HHHHHHhhcC
Confidence 9999999987
No 15
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-51 Score=462.23 Aligned_cols=216 Identities=40% Similarity=0.582 Sum_probs=196.2
Q ss_pred EEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCCCCeEEcCcEEEEeCCHHHHHHHHHhhhcccccccccC
Q 002577 37 YSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLL 116 (906)
Q Consensus 37 ~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~ 116 (906)
|+|+|||+||||+-|||||.+.+... ...+...+++|.+|.+||.|+++|.|.|.+|++.+|..|.++|++++|.+
T Consensus 226 ysV~VSf~EIYN~~iYDLLe~~s~q~----~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~l 301 (809)
T KOG0247|consen 226 YSVFVSFVEIYNNYIYDLLEDASFQG----KLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKL 301 (809)
T ss_pred EEEEeeHHHHHHHHHHHhhccccccc----hhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheec
Confidence 88999999999999999998764211 11123567889999999999999999999999999999999999999999
Q ss_pred CCCCCCCcceEEEEEEEeecCCCCCcceEEeeeccccccCCccccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhcC---
Q 002577 117 NKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEH--- 193 (906)
Q Consensus 117 n~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGsE~~~~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~~--- 193 (906)
|+.|||||+||+|.|.+..... +...+++|.|.|||||||||..++++.|.|++||++||.||++||+||.+|..+
T Consensus 302 N~~SSRSHsVFtIkl~q~~~~~-~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ 380 (809)
T KOG0247|consen 302 NANSSRSHSVFTIKLVQAPRSQ-DSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKS 380 (809)
T ss_pred cccccccceeEEEEeeeccccc-ccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999998765443 456789999999999999999999999999999999999999999999999874
Q ss_pred --CCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHHHHHHHHHHHHhccCccccccchhc
Q 002577 194 --SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKPEINQKM 257 (906)
Q Consensus 194 --~~~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~~~~eTlsTL~fa~rak~i~n~p~~n~~~ 257 (906)
..+|||||||||++++.+|.|+.+.|||+||+|.+.+|+|+++.|+||.-+..|.+.+.++..+
T Consensus 381 ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~~~~ 446 (809)
T KOG0247|consen 381 KSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVIKKQ 446 (809)
T ss_pred hccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCcccccC
Confidence 3689999999999999999999999999999999999999999999999999998888776554
No 16
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=8.9e-52 Score=456.57 Aligned_cols=228 Identities=36% Similarity=0.602 Sum_probs=212.5
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhcCCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCCCC
Q 002577 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKGG 81 (906)
Q Consensus 2 ~G~~~~~~g~~~~~~Giipr~~~~lF~~~~~~~~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~i~e~~~~~ 81 (906)
+|++++..|. +.++|||||++++||+.++.....|.|+|||+|||||.|+|||++. ..++.+++++.++
T Consensus 92 SGKTyTm~G~-~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~----------~~~l~i~~~~~~~ 160 (319)
T cd01376 92 AGKTHTMLGD-PNEPGLIPRTLSDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLLEPA----------KKELPIREDKDGN 160 (319)
T ss_pred CCCcEEEeCC-cCccchHHHHHHHHHHHHhhccccceEEEEEEEEECCEeeEccCCC----------CCCceEEEcCCCC
Confidence 4666666665 5699999999999999998877899999999999999999999864 2468899999999
Q ss_pred eEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCCCcceEEeeeccccccCCcccc
Q 002577 82 VFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENIS 161 (906)
Q Consensus 82 ~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGsE~~~ 161 (906)
++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|.|.+.... ....|+|+||||||||+..
T Consensus 161 ~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~-----~~~~s~l~~VDLAGsE~~~ 235 (319)
T cd01376 161 ILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN-----IQLEGKLNLIDLAGSEDNR 235 (319)
T ss_pred EEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC-----ceEEEEEEEEECCCCCccc
Confidence 99999999999999999999999999999999999999999999999999876422 2578999999999999999
Q ss_pred CCCCchhhHHHHHHhhhhHHHHHHHHHHHhcCCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHHHHHHHHHH
Q 002577 162 RSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYA 241 (906)
Q Consensus 162 ~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~~~~~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~~~~eTlsTL~fa 241 (906)
++++.|.+++|+..||+||++||+||.+|+.+..|||||+|+||+||+|+|||||+|+||+||||...+++||++||+||
T Consensus 236 ~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa 315 (319)
T cd01376 236 RTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFA 315 (319)
T ss_pred ccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 002577 242 HRAK 245 (906)
Q Consensus 242 ~rak 245 (906)
+|||
T Consensus 316 ~r~~ 319 (319)
T cd01376 316 SRSK 319 (319)
T ss_pred HhhC
Confidence 9986
No 17
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=2e-51 Score=456.19 Aligned_cols=239 Identities=42% Similarity=0.626 Sum_probs=217.2
Q ss_pred CCCCCCCCCCCC--CCCCcHHHHHHHHHHHHhhc-CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecC
Q 002577 2 EGGARKKNGEFP--SDAGVIPRAVKQIFDILEAQ-HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (906)
Q Consensus 2 ~G~~~~~~g~~~--~~~Giipr~~~~lF~~~~~~-~~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~i~e~~ 78 (906)
+|++++..|... .++|||||++.+||..++.. +..|.|+|||+|||||.|||||++.... ....+++.+++++
T Consensus 92 SGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~----~~~~~~l~i~e~~ 167 (334)
T cd01375 92 AGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEA----LESLPAVTILEDS 167 (334)
T ss_pred CCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccc----cccCCceEEEEcC
Confidence 467777777543 57899999999999999765 4589999999999999999999876421 1234578999999
Q ss_pred CCCeEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCCCcceEEeeeccccccCCc
Q 002577 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSE 158 (906)
Q Consensus 79 ~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGsE 158 (906)
.++++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+....+. ...+..|+|+||||||||
T Consensus 168 ~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~-~~~~~~s~l~~VDLAGsE 246 (334)
T cd01375 168 EQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAG-SEVVRLSKLNLVDLAGSE 246 (334)
T ss_pred CCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCC-CCceEEEEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999999998754443 335678999999999999
Q ss_pred cccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhcCC-CCCCCCCCccccccccccCCCceeeEEeecCCCCCChHHHHHH
Q 002577 159 NISRSGAREGRAREAGEINKSLLTLGRVINALVEHS-GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLST 237 (906)
Q Consensus 159 ~~~~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~~~-~~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~~~~eTlsT 237 (906)
+..+.++.+.+++|+..||+||++|++||.+|+.+. .||||||||||+||+|+|||||+|+||+||||+..+++||++|
T Consensus 247 r~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~T 326 (334)
T cd01375 247 RVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLST 326 (334)
T ss_pred ccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHH
Confidence 999999999999999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 002577 238 LDYAHRAK 245 (906)
Q Consensus 238 L~fa~rak 245 (906)
|+||+|++
T Consensus 327 L~fa~r~~ 334 (334)
T cd01375 327 LRFAQRVA 334 (334)
T ss_pred HHHHHhcC
Confidence 99999985
No 18
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.2e-51 Score=455.68 Aligned_cols=226 Identities=42% Similarity=0.627 Sum_probs=209.5
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhcCCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCCCC
Q 002577 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQHAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKGG 81 (906)
Q Consensus 2 ~G~~~~~~g~~~~~~Giipr~~~~lF~~~~~~~~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~i~e~~~~~ 81 (906)
+|+.++..|+ +.++|||||++++||+.++.....|.|+|||+|||||.|+|||++ .+++.+++++.++
T Consensus 96 SGKTyTm~G~-~~~~Glipr~~~~lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~-----------~~~l~i~~~~~~~ 163 (322)
T cd01367 96 SGKTYTMLGD-ENQEGLYALAARDIFRLLAQPNDDLGVTVSFFEIYGGKLFDLLND-----------RKRLSVLEDGKGN 163 (322)
T ss_pred CCCceEecCc-CCcCccHHHHHHHHHHHHhccccccEEEEEEEeeecCchhhhccC-----------ccceeEEEcCCCC
Confidence 4555555665 689999999999999999887789999999999999999999985 2468999999999
Q ss_pred eEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCCCcceEEeeeccccccCCcccc
Q 002577 82 VFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENIS 161 (906)
Q Consensus 82 ~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGsE~~~ 161 (906)
++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|..... ....|+|+||||||||+..
T Consensus 164 ~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~------~~~~s~l~~vDLAGsE~~~ 237 (322)
T cd01367 164 VQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL------NKLLGKLSFIDLAGSERGA 237 (322)
T ss_pred EEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC------CeeEEEEEEeecCCccccc
Confidence 9999999999999999999999999999999999999999999999999987543 3467999999999999998
Q ss_pred CCC-CchhhHHHHHHhhhhHHHHHHHHHHHhcCCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHHHHHHHHH
Q 002577 162 RSG-AREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDY 240 (906)
Q Consensus 162 ~~~-~~~~r~~E~~~iN~SL~~L~~vI~aL~~~~~~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~~~~eTlsTL~f 240 (906)
..+ ..+.+.+|+..||+||++|++||.+|+.+..||||||||||+||+|+|||||+|+||+||||+..+++||++||+|
T Consensus 238 ~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~f 317 (322)
T cd01367 238 DTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRY 317 (322)
T ss_pred cccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHH
Confidence 765 4688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc
Q 002577 241 AHRAK 245 (906)
Q Consensus 241 a~rak 245 (906)
|+|+|
T Consensus 318 a~r~k 322 (322)
T cd01367 318 ADRVK 322 (322)
T ss_pred HHhhC
Confidence 99986
No 19
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=2.8e-51 Score=453.70 Aligned_cols=234 Identities=44% Similarity=0.729 Sum_probs=215.9
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc-CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCCC
Q 002577 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ-HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKG 80 (906)
Q Consensus 2 ~G~~~~~~g~~~~~~Giipr~~~~lF~~~~~~-~~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~i~e~~~~ 80 (906)
+|++++..|. +.++|||||++++||..+... +..|.|+|||+|||||.|||||+|.. .++.+++++.+
T Consensus 85 SGKT~T~~G~-~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~----------~~l~i~~~~~~ 153 (321)
T cd01374 85 SGKTFTMSGD-EQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSP----------QELRIREDPNK 153 (321)
T ss_pred CCCceeccCC-CCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCC----------CCceEEECCCC
Confidence 4666665665 588999999999999999654 55899999999999999999998653 57899999999
Q ss_pred CeEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCCCcceEEeeeccccccCCccc
Q 002577 81 GVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENI 160 (906)
Q Consensus 81 ~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGsE~~ 160 (906)
|++|.|++++.|.|++++..+|..|..+|+.++|.+|..|||||+||+|+|......+.+...+..|+|+||||||||+.
T Consensus 154 ~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~ 233 (321)
T cd01374 154 GVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERA 233 (321)
T ss_pred CEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCcc
Confidence 99999999999999999999999999999999999999999999999999998766554445677899999999999999
Q ss_pred cCCCCchhhHHHHHHhhhhHHHHHHHHHHHhcCC--CCCCCCCCccccccccccCCCceeeEEeecCCCCCChHHHHHHH
Q 002577 161 SRSGAREGRAREAGEINKSLLTLGRVINALVEHS--GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTL 238 (906)
Q Consensus 161 ~~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~~~--~~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~~~~eTlsTL 238 (906)
...+ .+.+++|+..||+||.+|++||.+|+.+. .|||||+||||+||+|+|||||+|+|||||||...+++||++||
T Consensus 234 ~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL 312 (321)
T cd01374 234 SQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTL 312 (321)
T ss_pred ccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHH
Confidence 9998 89999999999999999999999999985 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhccC
Q 002577 239 DYAHRAKNI 247 (906)
Q Consensus 239 ~fa~rak~i 247 (906)
+||.||++|
T Consensus 313 ~~a~r~~~i 321 (321)
T cd01374 313 KFASRAKKV 321 (321)
T ss_pred HHHHHHhcC
Confidence 999999986
No 20
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=5.7e-51 Score=455.57 Aligned_cols=240 Identities=48% Similarity=0.745 Sum_probs=218.1
Q ss_pred CCCCCCCCCCC-----CCCCCcHHHHHHHHHHHHhhcC--CeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeE
Q 002577 2 EGGARKKNGEF-----PSDAGVIPRAVKQIFDILEAQH--AEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIAL 74 (906)
Q Consensus 2 ~G~~~~~~g~~-----~~~~Giipr~~~~lF~~~~~~~--~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~i 74 (906)
+|++++.+|.. ..++|||||++++||..+.... .+|.|.|||+|||||.|+|||++.. ....++.+
T Consensus 85 SGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~-------~~~~~l~i 157 (341)
T cd01372 85 SGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPST-------SEKSPIQI 157 (341)
T ss_pred CCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcc-------cCCCCceE
Confidence 46666666643 4689999999999999998754 4899999999999999999998653 12467999
Q ss_pred EecCCCCeEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCC-------CCCcceEEe
Q 002577 75 MEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTP-------EGEEMIKCG 147 (906)
Q Consensus 75 ~e~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~-------~~~~~~~~s 147 (906)
++++.++++|.|++++.|.|+++++.+|..|..+|..++|.+|..|||||+||+|+|.+..... .+......|
T Consensus 158 ~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s 237 (341)
T cd01372 158 REDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTS 237 (341)
T ss_pred EECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeE
Confidence 9999999999999999999999999999999999999999999999999999999998876531 123446789
Q ss_pred eeccccccCCccccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhcCC---CCCCCCCCccccccccccCCCceeeEEeec
Q 002577 148 KLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHS---GHVPYRDSKLTRLLRDSLGGKTKTCIIATV 224 (906)
Q Consensus 148 kl~lVDLAGsE~~~~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~~~---~~ipyRdSkLT~lL~dsLgg~~kt~~I~~i 224 (906)
+|+||||||||+..++++.+.+++|+..||+||++|++||.+|+.+. .|||||+|+||+||+|+|||||+|+||+||
T Consensus 238 ~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~v 317 (341)
T cd01372 238 KFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACV 317 (341)
T ss_pred EEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEe
Confidence 99999999999999999999999999999999999999999999876 699999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhccCc
Q 002577 225 SPSIHCLEETLSTLDYAHRAKNIK 248 (906)
Q Consensus 225 sp~~~~~~eTlsTL~fa~rak~i~ 248 (906)
||+..+++||++||+||.|||+|+
T Consensus 318 sp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 318 SPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred CCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999986
No 21
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=9.1e-51 Score=450.69 Aligned_cols=233 Identities=45% Similarity=0.696 Sum_probs=213.0
Q ss_pred CCCCCCCCCCCC--CCCCcHHHHHHHHHHHHhhc--CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEec
Q 002577 2 EGGARKKNGEFP--SDAGVIPRAVKQIFDILEAQ--HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMED 77 (906)
Q Consensus 2 ~G~~~~~~g~~~--~~~Giipr~~~~lF~~~~~~--~~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~i~e~ 77 (906)
+|+.++..|... .++|||||++++||..+... +.+|.|+|||+|||||.|+|||++.. ..+.++++
T Consensus 88 SGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~----------~~l~i~~~ 157 (325)
T cd01369 88 SGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSK----------DNLQVHED 157 (325)
T ss_pred CCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCcc----------CCceEEEc
Confidence 355555566433 48999999999999998764 34899999999999999999998642 46889999
Q ss_pred CCCCeEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCCCcceEEeeeccccccCC
Q 002577 78 GKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGS 157 (906)
Q Consensus 78 ~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGs 157 (906)
+.+|++|.|++++.|.|++++..+|..|..+|++++|.+|..|||||+||+|+|.+..... .....|+|+|||||||
T Consensus 158 ~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~---~~~~~s~l~~VDLAGs 234 (325)
T cd01369 158 KNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVET---GSKKRGKLFLVDLAGS 234 (325)
T ss_pred CCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCC---CCEEEEEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999999998765332 2357899999999999
Q ss_pred ccccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhcCC-CCCCCCCCccccccccccCCCceeeEEeecCCCCCChHHHHH
Q 002577 158 ENISRSGAREGRAREAGEINKSLLTLGRVINALVEHS-GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLS 236 (906)
Q Consensus 158 E~~~~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~~~-~~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~~~~eTls 236 (906)
|+..++++.+.+++|+..||+||++|++||.+|+.+. .|||||+|+||+||+|+|||+|+|+||+||||+..+++||++
T Consensus 235 E~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~ 314 (325)
T cd01369 235 EKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLS 314 (325)
T ss_pred CcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHH
Confidence 9999999999999999999999999999999999987 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccC
Q 002577 237 TLDYAHRAKNI 247 (906)
Q Consensus 237 TL~fa~rak~i 247 (906)
||+||+|||+|
T Consensus 315 TL~~a~r~~~i 325 (325)
T cd01369 315 TLRFGARAKTI 325 (325)
T ss_pred HHHHHHHhhcC
Confidence 99999999987
No 22
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=7.8e-50 Score=444.26 Aligned_cols=238 Identities=43% Similarity=0.662 Sum_probs=218.3
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc---CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecC
Q 002577 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ---HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (906)
Q Consensus 2 ~G~~~~~~g~~~~~~Giipr~~~~lF~~~~~~---~~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~i~e~~ 78 (906)
+|++++..|. +.++|||||++++||..+... +..|.|+|||+|||||.|+|||++.. ..+.++.+++++
T Consensus 89 SGKT~tl~G~-~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~-------~~~~~l~i~~~~ 160 (329)
T cd01366 89 SGKTYTMEGP-PENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKP-------APKKKLEIKHDS 160 (329)
T ss_pred CCCcEEecCC-CCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCc-------CCCCceEEEECC
Confidence 3555555554 589999999999999998764 46899999999999999999998653 235689999999
Q ss_pred CCCeEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCCCcceEEeeeccccccCCc
Q 002577 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSE 158 (906)
Q Consensus 79 ~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGsE 158 (906)
.++++|.|++++.|.|++|+..+|..|..+|..+.|.+|..|||||+||+|+|...... ......|+|+||||||||
T Consensus 161 ~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~---~~~~~~s~l~~VDLaGsE 237 (329)
T cd01366 161 KGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ---TGEQTRGKLNLVDLAGSE 237 (329)
T ss_pred CCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC---CCcEEEEEEEEEECCCCc
Confidence 99999999999999999999999999999999999999999999999999999876533 223578999999999999
Q ss_pred cccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhcCCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHHHHHHH
Q 002577 159 NISRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTL 238 (906)
Q Consensus 159 ~~~~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~~~~~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~~~~eTlsTL 238 (906)
+..+.++.+.+++|+..||+||.+|++||.+|+.+..|||||+|+||+||+|+|||+|+|+||+||||...+++||++||
T Consensus 238 ~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL 317 (329)
T cd01366 238 RLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSL 317 (329)
T ss_pred ccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCccc
Q 002577 239 DYAHRAKNIKNK 250 (906)
Q Consensus 239 ~fa~rak~i~n~ 250 (906)
+||.|+++|++.
T Consensus 318 ~~a~~~~~i~~~ 329 (329)
T cd01366 318 RFASRVRSVELG 329 (329)
T ss_pred HHHHHhhcccCC
Confidence 999999999874
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=7.3e-49 Score=438.05 Aligned_cols=241 Identities=52% Similarity=0.797 Sum_probs=220.9
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc--CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCC
Q 002577 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ--HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGK 79 (906)
Q Consensus 2 ~G~~~~~~g~~~~~~Giipr~~~~lF~~~~~~--~~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~i~e~~~ 79 (906)
+|++++..| .+.++|||||++++||..+... +..|+|+|||+|||||.|+|||++. ++++.+++++.
T Consensus 91 SGKT~tl~G-~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~----------~~~l~i~~~~~ 159 (335)
T smart00129 91 SGKTYTMSG-TPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS----------PKKLEIREDKK 159 (335)
T ss_pred CCCceEecC-CCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC----------CCCcEEEECCC
Confidence 455555555 4678999999999999999764 3589999999999999999999854 35799999999
Q ss_pred CCeEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCCCcceEEeeeccccccCCcc
Q 002577 80 GGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSEN 159 (906)
Q Consensus 80 ~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGsE~ 159 (906)
++++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|.+..... +......|+|+||||||||+
T Consensus 160 ~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~-~~~~~~~s~l~~VDLaGse~ 238 (335)
T smart00129 160 GGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNS-SSGSGKASKLNLVDLAGSER 238 (335)
T ss_pred CCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCC-CCCCEEEEEEEEEECCCCCc
Confidence 99999999999999999999999999999999999999999999999999998764333 33456789999999999999
Q ss_pred ccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhc--CCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHHHHHH
Q 002577 160 ISRSGAREGRAREAGEINKSLLTLGRVINALVE--HSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLST 237 (906)
Q Consensus 160 ~~~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~--~~~~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~~~~eTlsT 237 (906)
....++.+.+++|+..||+||.+|++||.+|++ +..|||||+|+||+||+++|||+|+|+||+||||...+++||++|
T Consensus 239 ~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~t 318 (335)
T smart00129 239 ASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLST 318 (335)
T ss_pred cccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHH
Confidence 999999999999999999999999999999999 467999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCccccccc
Q 002577 238 LDYAHRAKNIKNKPEIN 254 (906)
Q Consensus 238 L~fa~rak~i~n~p~~n 254 (906)
|+||.++++|+|+|.+|
T Consensus 319 L~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 319 LRFASRAKEIKNKAIVN 335 (335)
T ss_pred HHHHHHHhhcccCCCcC
Confidence 99999999999999876
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=2.3e-49 Score=442.53 Aligned_cols=239 Identities=49% Similarity=0.781 Sum_probs=214.3
Q ss_pred CCCCCCCCC-CCCCCCcHHHHHHHHHHHHhhcC----CeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEec
Q 002577 3 GGARKKNGE-FPSDAGVIPRAVKQIFDILEAQH----AEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMED 77 (906)
Q Consensus 3 G~~~~~~g~-~~~~~Giipr~~~~lF~~~~~~~----~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~i~e~ 77 (906)
|+.++..|. .+.++|||||++++||..+.... ..|.|+|||+|||||.|+|||++.. ....+++.++++
T Consensus 87 GKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~------~~~~~~l~i~~~ 160 (335)
T PF00225_consen 87 GKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNN------SKSRKPLKIRED 160 (335)
T ss_dssp SHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTS------SSTTSEBEEEEE
T ss_pred cccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccc------cccccccceeec
Confidence 344344443 37899999999999999998753 4799999999999999999999764 113458999999
Q ss_pred CCCC-eEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCCCc-ceEEeeecccccc
Q 002577 78 GKGG-VFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEE-MIKCGKLNLVDLA 155 (906)
Q Consensus 78 ~~~~-~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~-~~~~skl~lVDLA 155 (906)
+..| ++|.|++++.|.|++++..+|..|..+|+++.|.+|..|||||+||+|+|.+....+.+.. ....|+|+|||||
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLa 240 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLA 240 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEE
T ss_pred cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeecc
Confidence 9876 9999999999999999999999999999999999999999999999999998876655432 3578999999999
Q ss_pred CCccccCCCCc-hhhHHHHHHhhhhHHHHHHHHHHHhcC--CCCCCCCCCccccccccccCCCceeeEEeecCCCCCChH
Q 002577 156 GSENISRSGAR-EGRAREAGEINKSLLTLGRVINALVEH--SGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLE 232 (906)
Q Consensus 156 GsE~~~~~~~~-~~r~~E~~~iN~SL~~L~~vI~aL~~~--~~~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~~~~ 232 (906)
|||+..+.++. +.+.+|++.||+||.+|++||.+|+.+ ..|||||+||||+||+|+|||||+|+||+||||+..+++
T Consensus 241 GsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~ 320 (335)
T PF00225_consen 241 GSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYE 320 (335)
T ss_dssp ESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHH
T ss_pred cccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHH
Confidence 99999998874 788999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccC
Q 002577 233 ETLSTLDYAHRAKNI 247 (906)
Q Consensus 233 eTlsTL~fa~rak~i 247 (906)
||++||+||.++|+|
T Consensus 321 eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 321 ETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999986
No 25
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2.7e-49 Score=463.53 Aligned_cols=243 Identities=40% Similarity=0.602 Sum_probs=223.4
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc--CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCC
Q 002577 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ--HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGK 79 (906)
Q Consensus 2 ~G~~~~~~g~~~~~~Giipr~~~~lF~~~~~~--~~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~i~e~~~ 79 (906)
+|+.+++.|..+.++|||||++.+||..+... ++.|.+.+||+|||||.|+|||++.. ....+.|++++.
T Consensus 404 SGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~--------~~~k~~I~~~~~ 475 (670)
T KOG0239|consen 404 SGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDES--------YVGKLEIVDDAE 475 (670)
T ss_pred CCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccc--------cccceeEEEcCC
Confidence 57777777767899999999999999988654 67999999999999999999998653 245789999999
Q ss_pred CCeEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCCCcceEEeeeccccccCCcc
Q 002577 80 GGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSEN 159 (906)
Q Consensus 80 ~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGsE~ 159 (906)
++.+|.|++.+.|.+.+++..+++.|..+|.+++|.+|.+|||||+||+|+|......+ .....|.|+|||||||||
T Consensus 476 ~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t---~~~~~g~l~LVDLAGSER 552 (670)
T KOG0239|consen 476 GNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELT---GIRVTGVLNLVDLAGSER 552 (670)
T ss_pred CceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCc---ccccccceeEeecccCcc
Confidence 99999999999999999999999999999999999999999999999999997653332 234579999999999999
Q ss_pred ccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhcCCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHHHHHHHH
Q 002577 160 ISRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLD 239 (906)
Q Consensus 160 ~~~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~~~~~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~~~~eTlsTL~ 239 (906)
+++++++|.|++|+.+||+||++||.||.||+.+.+|||||+||||+||+|+|||++||+|+++|||...++.||+++|+
T Consensus 553 ~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~ 632 (670)
T KOG0239|consen 553 VSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLR 632 (670)
T ss_pred cCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCccccccch
Q 002577 240 YAHRAKNIKNKPEINQ 255 (906)
Q Consensus 240 fa~rak~i~n~p~~n~ 255 (906)
||.|++.+...|-.-+
T Consensus 633 FA~rv~~~~lG~a~~~ 648 (670)
T KOG0239|consen 633 FATRVRSVELGSARKQ 648 (670)
T ss_pred hHHHhhceeccccccc
Confidence 9999999998886533
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-47 Score=416.53 Aligned_cols=234 Identities=40% Similarity=0.625 Sum_probs=209.4
Q ss_pred CCCCCCCCCCCCC-----CCCcHHHHHHHHHHHHhhcC---CeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCee
Q 002577 2 EGGARKKNGEFPS-----DAGVIPRAVKQIFDILEAQH---AEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIA 73 (906)
Q Consensus 2 ~G~~~~~~g~~~~-----~~Giipr~~~~lF~~~~~~~---~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~ 73 (906)
+|+.++.+|+++. ..||.-++..++|..+.... -++.|+|||||||+.+|||||++ ++.+.
T Consensus 303 SGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~-----------k~KLr 371 (676)
T KOG0246|consen 303 SGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND-----------KKKLR 371 (676)
T ss_pred CCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc-----------ccceE
Confidence 4666677776654 35999999999999998743 48999999999999999999973 45799
Q ss_pred EEecCCCCeEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCCCcceEEeeecccc
Q 002577 74 LMEDGKGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVD 153 (906)
Q Consensus 74 i~e~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVD 153 (906)
+.+|+++.|.|.||++..|.+.++++.+|..|..-|+++.|..|..|||||+||.|.+... .+...+||+.|||
T Consensus 372 vLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~------~~~k~hGKfSlID 445 (676)
T KOG0246|consen 372 VLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKH------GEFKLHGKFSLID 445 (676)
T ss_pred EeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecC------CcceeEeEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999998542 1234689999999
Q ss_pred ccCCccccC-CCCchhhHHHHHHhhhhHHHHHHHHHHHhcCCCCCCCCCCccccccccccCC-CceeeEEeecCCCCCCh
Q 002577 154 LAGSENISR-SGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGG-KTKTCIIATVSPSIHCL 231 (906)
Q Consensus 154 LAGsE~~~~-~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~~~~~ipyRdSkLT~lL~dsLgg-~~kt~~I~~isp~~~~~ 231 (906)
|||+||... +.+..+...||..||+||++|..||.||..+++|+|||.||||.+|+|||=| |++||||+||||+..++
T Consensus 446 LAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~Sc 525 (676)
T KOG0246|consen 446 LAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSC 525 (676)
T ss_pred ccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchh
Confidence 999999755 4456677889999999999999999999999999999999999999999988 99999999999999999
Q ss_pred HHHHHHHHHHHHhccCccccc
Q 002577 232 EETLSTLDYAHRAKNIKNKPE 252 (906)
Q Consensus 232 ~eTlsTL~fa~rak~i~n~p~ 252 (906)
+.||+||+||+|+|...-.+.
T Consensus 526 EhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 526 EHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred hhhHHHHHHHHHHHhhcCCCC
Confidence 999999999999998755443
No 27
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.3e-46 Score=419.12 Aligned_cols=234 Identities=50% Similarity=0.799 Sum_probs=214.2
Q ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc---CCeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecC
Q 002577 2 EGGARKKNGEFPSDAGVIPRAVKQIFDILEAQ---HAEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDG 78 (906)
Q Consensus 2 ~G~~~~~~g~~~~~~Giipr~~~~lF~~~~~~---~~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~i~e~~ 78 (906)
+|+.++..|. +.++|||||++++||..+... ...|.|++||+|||+|.|+|||++.. ...++.+++++
T Consensus 90 SGKT~tl~G~-~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~--------~~~~l~i~~~~ 160 (328)
T cd00106 90 SGKTYTMFGS-PKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEP--------PSKPLSLREDP 160 (328)
T ss_pred CCCeEEecCC-CCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCC--------CCCCcEEEEcC
Confidence 3555555554 688999999999999999876 36899999999999999999998752 24689999999
Q ss_pred CCCeEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCCCcceEEeeeccccccCCc
Q 002577 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSE 158 (906)
Q Consensus 79 ~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGsE 158 (906)
.++++|.|++++.|.|+++++.+|..|..+|..+.|.+|..|||||+||+|+|........+. ....|+|+||||||||
T Consensus 161 ~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~-~~~~s~l~~VDLaGse 239 (328)
T cd00106 161 KGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGR-SIKSSKLNLVDLAGSE 239 (328)
T ss_pred CCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCc-cEEEEEEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999999998876544322 3578999999999999
Q ss_pred cccCCCCchhhHHHHHHhhhhHHHHHHHHHHHhcCC--CCCCCCCCccccccccccCCCceeeEEeecCCCCCChHHHHH
Q 002577 159 NISRSGAREGRAREAGEINKSLLTLGRVINALVEHS--GHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLS 236 (906)
Q Consensus 159 ~~~~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~~~--~~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~~~~eTls 236 (906)
+....+..+.+..|+..||+||.+|++||.+|+.+. .|||||+||||+||+|+|||+|+|+||+||||...+++||++
T Consensus 240 ~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~ 319 (328)
T cd00106 240 RAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLS 319 (328)
T ss_pred cccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHH
Confidence 999999999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 002577 237 TLDYAHRAK 245 (906)
Q Consensus 237 TL~fa~rak 245 (906)
||+||+|||
T Consensus 320 tL~~a~r~~ 328 (328)
T cd00106 320 TLRFASRAK 328 (328)
T ss_pred HHHHHHhcC
Confidence 999999986
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.4e-46 Score=433.82 Aligned_cols=267 Identities=46% Similarity=0.694 Sum_probs=235.6
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHhhcC--CeEEEEEEEEEEEcCceeecCCCCCCCcccccCCCCCeeEEecCCC
Q 002577 3 GGARKKNGEFPSDAGVIPRAVKQIFDILEAQH--AEYSMKVTFLELYNEEISDLLALEETSKFVDDKSKKPIALMEDGKG 80 (906)
Q Consensus 3 G~~~~~~g~~~~~~Giipr~~~~lF~~~~~~~--~~~~v~~S~~Eiyne~v~DLL~~~~~~~~~~~~~~~~l~i~e~~~~ 80 (906)
|+.++..| ....+||||+++..||+.++... ..|.|.|||+|||||+++|||.|... .+.++++..+
T Consensus 102 gKtyt~~G-~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~----------~~~~~~~~~~ 170 (568)
T COG5059 102 GKTYTMSG-TEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEE----------SLNIREDSLL 170 (568)
T ss_pred CceeEeec-CccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccc----------cccccccCCC
Confidence 44444444 45899999999999999998765 68999999999999999999987652 2678899999
Q ss_pred CeEEcCcEEEEeCCHHHHHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCCCcceEEeeeccccccCCccc
Q 002577 81 GVFVRGLEEEIVTTADEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENI 160 (906)
Q Consensus 81 ~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGsE~~ 160 (906)
+++|.|++++.|.++++++.+|..|..+|+++.|.+|+.|||||+||++++........ ....++|+||||||||++
T Consensus 171 ~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~---~~~~~~l~lvDLagSE~~ 247 (568)
T COG5059 171 GVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSG---TSETSKLSLVDLAGSERA 247 (568)
T ss_pred ceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCcc---ceecceEEEEeecccccc
Confidence 99999999999999999999999999999999999999999999999999987654432 223479999999999999
Q ss_pred cCCCCchhhHHHHHHhhhhHHHHHHHHHHHhc--CCCCCCCCCCccccccccccCCCceeeEEeecCCCCCChHHHHHHH
Q 002577 161 SRSGAREGRAREAGEINKSLLTLGRVINALVE--HSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTL 238 (906)
Q Consensus 161 ~~~~~~~~r~~E~~~iN~SL~~L~~vI~aL~~--~~~~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~~~~eTlsTL 238 (906)
..++..+.|++|+..||+||++||+||++|.. +..|||||+|||||+|+++|||+|+|++||||+|...++++|.+||
T Consensus 248 ~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL 327 (568)
T COG5059 248 ARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTL 327 (568)
T ss_pred chhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHH
Confidence 99999999999999999999999999999997 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCccccccchhccHHHHhHHHHHHHHHHHHHHHHHHhhcCCcCCc
Q 002577 239 DYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGIYIPR 290 (906)
Q Consensus 239 ~fa~rak~i~n~p~~n~~~~~~~~ik~l~~Ei~~Lk~el~~~r~kn~~~~~~ 290 (906)
+||.||++|+|.|.+|.. .....++..++.++...+...+.+...
T Consensus 328 ~~a~rak~I~~~~~~~~~-------~~~~~~~~~~~~d~~~~~~~~~~~~~~ 372 (568)
T COG5059 328 KFASRAKSIKNKIQVNSS-------SDSSREIEEIKFDLSEDRSEIEILVFR 372 (568)
T ss_pred HHHHHHhhcCCcccccCc-------CcchHHHHHHHhhhhhhhhhhhhHHHH
Confidence 999999999999999963 233456677777777777666554433
No 29
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=6.5e-35 Score=366.00 Aligned_cols=482 Identities=16% Similarity=0.187 Sum_probs=444.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 301 KAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANL 380 (906)
Q Consensus 301 ~~~~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l 380 (906)
...+++++++.+...+++.++.+++..++.+...+.++++..+++++.+...+..+.+++....++...++.++..+..+
T Consensus 1002 ~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l 1081 (1930)
T KOG0161|consen 1002 QAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQL 1081 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHH
Q 002577 381 LKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQ------EQQ 454 (906)
Q Consensus 381 ~~~e~~l~~~~~~L~~~l~~~~~di~~L~~klerk~~~~~~n~~~~~~~~~eL~~~~~~l~~~i~~~~~qq------e~e 454 (906)
....+.+...+..+++.+.++...|.+|.+.++.++..+++.++.+.++..+++++.++|++..+++..++ +.+
T Consensus 1082 ~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e 1161 (1930)
T KOG0161|consen 1082 QSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAE 1161 (1930)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888777 688
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh---hHHhhHhHHHHHHHHHHHH------HHH
Q 002577 455 LKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGELDG---NSRSTFGDLNSEVSKHSHA------LED 525 (906)
Q Consensus 455 l~~l~~~~~~~~~~~~~~l~eL~~k~~~~~~~~~~qie~l~~~~~~l~k---~~~~~le~l~~~~~s~~~~------~~k 525 (906)
++.+.+.++....+++..+.++++++.+...++..|++.+++.+..+.+ .+..+..++...+..-... .++
T Consensus 1162 ~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k 1241 (1930)
T KOG0161|consen 1162 VQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDK 1241 (1930)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHH
Confidence 9999999999999999999999999999999999999999999999886 3666777777777643333 377
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 002577 526 LFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVENARSVSKVTVNFFKTLDMHASNLTKIVEEAQTVNDQK 605 (906)
Q Consensus 526 ~l~~~~~e~~~~~e~l~~~l~~~~~e~~~l~~q~~e~~~~~le~~~~~~~~~~~~~~~l~~~~~~l~~~leee~~~~~~~ 605 (906)
.++..+.|+...++++.+.++++......+..+.. .+.+.++......+.+.+....++.++.+++..++++
T Consensus 1242 ~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~-~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e------- 1313 (1930)
T KOG0161|consen 1242 KLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENE-ELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEE------- 1313 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 88999999999999999999998888888888444 4455588888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---hhhhhhhHHHHHHHH
Q 002577 606 LFEFEKKFEESAANEERQLLEKVAELLASSNARKKQLVQMAVQDLRESASSRTSQLQKEMST---MQDSTFSVKAEWSAH 682 (906)
Q Consensus 606 ~~~~~~~~~e~~~~e~~~l~~~i~~ll~~~~~rqk~~l~~~~~~l~~~~~~~~e~leee~~~---lq~~~s~~~~e~~~~ 682 (906)
+|.+..+++++++++++++.++++++++++. +++.+++++.++++|
T Consensus 1314 -------------------------------~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~ 1362 (1930)
T KOG0161|consen 1314 -------------------------------TREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQW 1362 (1930)
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988 999999999999999
Q ss_pred HHhhhhhHHhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHch--HHhhHHHHHHHHh
Q 002577 683 MNKTESHYLEDTSAVENGKKDLEVVLQNCLKQAKMGAQQWRTAQESLLNLEKNNVAAVDSIVRGG--MEANQNIHARFSS 760 (906)
Q Consensus 683 ~~k~E~~~~~~~~~~ee~k~~l~~~lq~~~~~~~~~~~k~~~~eks~~~L~~~~~~eldd~~~~~--~~~n~~~lekkq~ 760 (906)
++|+++..++.++++++.|+++..+++++.+.++.+++++.++++++++|+ ++++|+..+. .++.++.++++++
T Consensus 1363 ~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~----~el~d~~~d~~~~~~~~~~le~k~k 1438 (1930)
T KOG0161|consen 1363 KKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQ----QELEDLQLDLERSRAAVAALEKKQK 1438 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 9999999955 6667888999999
Q ss_pred hHHHHHHhHHHhhHHHHHHHHhHHhhhHHHhhhhhhhhhhccchhhhhhh------ccccchhHHHHHHhh
Q 002577 761 AVSTALQDADVADSNLLTSIDYSLQLDQDACANLNSMIVPCCGDLRELKG------GHYHKIVEITENAGK 825 (906)
Q Consensus 761 ~fd~~~~e~~~~~~~~~~e~d~s~~e~r~~~t~~~~~~~~~~e~l~~le~------~~~~~~~~i~~~~~~ 825 (906)
.|++++++|+.++++++.++|+++++.|..+|+++++.+++++.++++++ .+...+.++..+...
T Consensus 1439 ~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e 1509 (1930)
T KOG0161|consen 1439 RFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDE 1509 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998875 666777777666544
No 30
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=6.4e-35 Score=297.58 Aligned_cols=129 Identities=54% Similarity=0.792 Sum_probs=122.3
Q ss_pred HHHHHHhhhcccccccccCCCCCCCCcceEEEEEEEeecCCCCCcceEEeeeccccccCCccccCCCCchhhHHHHHHhh
Q 002577 98 IYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSGAREGRAREAGEIN 177 (906)
Q Consensus 98 ~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGsE~~~~~~~~~~r~~E~~~iN 177 (906)
++.++..|..+|+.+.|.+|..|||||+||+|+|........+......|+|+||||||||+..+.++.+.+++|+..||
T Consensus 58 ~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in 137 (186)
T cd01363 58 VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANIN 137 (186)
T ss_pred HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHh
Confidence 78899999999999999999999999999999998876655444566789999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCCCCccccccccccCCCceeeEEeecCC
Q 002577 178 KSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATVSP 226 (906)
Q Consensus 178 ~SL~~L~~vI~aL~~~~~~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp 226 (906)
+||.+|++||.+|+++..|||||+||||+||+|+|||||+|+||+||||
T Consensus 138 ~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 138 KSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred hHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 9999999999999999999999999999999999999999999999999
No 31
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.97 E-value=4.7e-33 Score=340.71 Aligned_cols=423 Identities=15% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 360 EEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEI 439 (906)
Q Consensus 360 e~~l~~~~~~l~eke~~i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L~~klerk~~~~~~n~~~~~~~~~eL~~~~~~ 439 (906)
+....++...|+++++.++.+....+........+++.+.++...|..|.+.|+.++..+.+..+.+.++..+|..+...
T Consensus 3 ~~~~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~ 82 (859)
T PF01576_consen 3 ERQKEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKER 82 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHH------HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh---hHHhhHh
Q 002577 440 LHKTVATSVTQQ------EQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGELDG---NSRSTFG 510 (906)
Q Consensus 440 l~~~i~~~~~qq------e~el~~l~~~~~~~~~~~~~~l~eL~~k~~~~~~~~~~qie~l~~~~~~l~k---~~~~~le 510 (906)
|++..+.+.+++ ++++..|.+.+++....|+..+.+|+++|.+....+..+|+.+++.+..+++ .+..+++
T Consensus 83 Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~ 162 (859)
T PF01576_consen 83 LEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELD 162 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999999998887 8899999999999999999999999999999999999999999999999997 4777888
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhH
Q 002577 511 DLNSEVSKHSHA------LEDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVENARSVSKVTVNFFKTL 584 (906)
Q Consensus 511 ~l~~~~~s~~~~------~~k~l~~~~~e~~~~~e~l~~~l~~~~~e~~~l~~q~~e~~~~~le~~~~~~~~~~~~~~~l 584 (906)
++...+.....+ ..+.+...+.++...+++..+.++++...+.++..+..+ +.+.++........+.+....+
T Consensus 163 dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~e-L~~qLee~e~~~~~l~r~k~~L 241 (859)
T PF01576_consen 163 DLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSE-LTRQLEEAESQLSQLQREKSSL 241 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 888888754443 377889999999999999999999999999999996654 4555999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002577 585 DMHASNLTKIVEEAQTVNDQKLFEFEKKFEESAANEERQLLEKVAELLASSNARKKQLVQMAVQDLRESASSRTSQLQKE 664 (906)
Q Consensus 585 ~~~~~~l~~~leee~~~~~~~~~~~~~~~~e~~~~e~~~l~~~i~~ll~~~~~rqk~~l~~~~~~l~~~~~~~~e~leee 664 (906)
..++.+++..++++ ++.+..|.+.+++++++++.++++++++
T Consensus 242 ~~qLeelk~~leeE--------------------------------------tr~k~~L~~~l~~le~e~~~L~eqleeE 283 (859)
T PF01576_consen 242 ESQLEELKRQLEEE--------------------------------------TRAKQALEKQLRQLEHELEQLREQLEEE 283 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhHHHHHhH--------------------------------------hhhhhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999 9999999999999999999999999999
Q ss_pred HHh---hhhhhhhHHHHHHHHHHhhhhhHHhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhHH
Q 002577 665 MST---MQDSTFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVLQNCLKQAKMGAQQWRTAQESLLNLEKNNVAAVD 741 (906)
Q Consensus 665 ~~~---lq~~~s~~~~e~~~~~~k~E~~~~~~~~~~ee~k~~l~~~lq~~~~~~~~~~~k~~~~eks~~~L~~~~~~eld 741 (906)
.++ +++++++++.+|..|+.||++++...++.++++|++|..+|+++.+.++.+.+++.++++++.+|+ ++++
T Consensus 284 ~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~----~Ele 359 (859)
T PF01576_consen 284 EEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQ----GELE 359 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 877 999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHH--chHHhhHHHHHHHHhhHHHHHHhHHHhhHHHHHHHHhHHhhhHHHhhhhhhhhhhccchhhhhhh------ccc
Q 002577 742 SIVR--GGMEANQNIHARFSSAVSTALQDADVADSNLLTSIDYSLQLDQDACANLNSMIVPCCGDLRELKG------GHY 813 (906)
Q Consensus 742 d~~~--~~~~~n~~~lekkq~~fd~~~~e~~~~~~~~~~e~d~s~~e~r~~~t~~~~~~~~~~e~l~~le~------~~~ 813 (906)
|+.+ +..++.+..++|+|+.||+.+++|+.++..+..++|++++++|.+.|++|++.+.|++..+.++. .+.
T Consensus 360 Dl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~ 439 (859)
T PF01576_consen 360 DLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQ 439 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 9999 66666677799999999999999999999999999999999999999999999999999999875 667
Q ss_pred cchhHHHHHHhh
Q 002577 814 HKIVEITENAGK 825 (906)
Q Consensus 814 ~~~~~i~~~~~~ 825 (906)
.+|.++.++.+.
T Consensus 440 ~El~dl~~q~~~ 451 (859)
T PF01576_consen 440 DELEDLTSQLDD 451 (859)
T ss_dssp ------------
T ss_pred Hhhccchhhhhh
Confidence 777777766554
No 32
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.86 E-value=6.4e-15 Score=187.18 Aligned_cols=433 Identities=17% Similarity=0.173 Sum_probs=362.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 296 EEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDF 375 (906)
Q Consensus 296 ~e~e~~~~~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~ 375 (906)
.+.++...+.+++.++..+..++..+.+|....+.......++...+...+.+++.+.+....++..+.+++..++++..
T Consensus 955 ~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~ 1034 (1930)
T KOG0161|consen 955 LELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKR 1034 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566778888888888888889898888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002577 376 LIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILI---QMFQSQLTQQLEILHKTVATSVTQQE 452 (906)
Q Consensus 376 ~i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L~~klerk~~~~~~n~~~~---~~~~~eL~~~~~~l~~~i~~~~~qqe 452 (906)
.+.++++...++.++...++..+.++...+.+|...+..+........... .....++.+.+.+|..++......++
T Consensus 1035 ~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le 1114 (1930)
T KOG0161|consen 1035 IRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELE 1114 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998888766666655 45667788888999999999999999
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 002577 453 QQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIAS 532 (906)
Q Consensus 453 ~el~~l~~~~~~~~~~~~~~l~eL~~k~~~~~~~~~~qie~l~~~~~~l~k~~~~~le~l~~~~~s~~~~~~k~l~~~~~ 532 (906)
.+...+.+.-+. ..+....+++|+.++.+..+.+..+++.-++...++.+ +++++++-....+.....+++.+.+.+.
T Consensus 1115 ~er~~r~K~ek~-r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~-l~~~leee~~~~e~~~~~lr~~~~~~~~ 1192 (1930)
T KOG0161|consen 1115 AERASRAKAERQ-RRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQK-LRRDLEEETLDHEAQIEELRKKHADSLA 1192 (1930)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 998888887766 58899999999999999999999999999999999888 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 002577 533 EADSLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVENARSVSKVTVNFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKK 612 (906)
Q Consensus 533 e~~~~~e~l~~~l~~~~~e~~~l~~q~~e~~~~~le~~~~~~~~~~~~~~~l~~~~~~l~~~leee~~~~~~~~~~~~~~ 612 (906)
++...++++++....+..+...+..+..+.... ++........++++++.++.++++++..+++..+...+...+..+.
T Consensus 1193 el~~qle~l~~~k~~lekek~~lq~e~~~l~~e-v~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l 1271 (1930)
T KOG0161|consen 1193 ELQEQLEQLQKDKAKLEKEKSDLQREIADLAAE-LEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRL 1271 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999966666655 8888888899999999999999999999999999999999999999
Q ss_pred HHHHHHH--HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---hhhhhhhHHHHHHHHHHhhh
Q 002577 613 FEESAAN--EERQLLEKVAELLASSNARKKQLVQMAVQDLRESASSRTSQLQKEMST---MQDSTFSVKAEWSAHMNKTE 687 (906)
Q Consensus 613 ~~e~~~~--e~~~l~~~i~~ll~~~~~rqk~~l~~~~~~l~~~~~~~~e~leee~~~---lq~~~s~~~~e~~~~~~k~E 687 (906)
..|.... .+++...++.++ .|.+ .++...+..++.+++++.-. +..++..+..+....+.++|
T Consensus 1272 ~~E~~~l~~~lee~e~~~~~~-----~r~~-------~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~le 1339 (1930)
T KOG0161|consen 1272 QNENEELSRQLEEAEAKLSAL-----SRDK-------QALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLE 1339 (1930)
T ss_pred hhhHHHHhhHhHHHHHHHHHH-----HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888777 555555555422 3333 34444455567778877744 88888999999999999997
Q ss_pred hhHHhhhHhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhHhHHHHHH
Q 002577 688 SHYLEDTSAVENGKKDLEVVLQNCLKQAKMGAQQ-WRTAQESLLNLEKNNVAAVDSIVR 745 (906)
Q Consensus 688 ~~~~~~~~~~ee~k~~l~~~lq~~~~~~~~~~~k-~~~~eks~~~L~~~~~~eldd~~~ 745 (906)
.+ .++...+.-.-.+....+++....++....+ ...++..+++++ ..++++...+.
T Consensus 1340 ee-~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~-~~lq~~qe~~e 1396 (1930)
T KOG0161|consen 1340 EE-QEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQ-QRLQELEEQIE 1396 (1930)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence 44 4666666555566666666666666665555 678888888887 33444444433
No 33
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.02 E-value=4.4e-11 Score=147.83 Aligned_cols=347 Identities=17% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhHHHHH
Q 002577 393 ELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEA 472 (906)
Q Consensus 393 ~L~~~l~~~~~di~~L~~klerk~~~~~~n~~~~~~~~~eL~~~~~~l~~~i~~~~~qqe~el~~l~~~~~~~~~~~~~~ 472 (906)
.+...|......+..+..+++-+.. ....+...+.+|+.+|..+..+++.+.....+.-.. ..+....
T Consensus 8 ~l~~~l~kke~El~~~~~~~e~e~~-----------~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~-r~dL~~E 75 (859)
T PF01576_consen 8 ELEEQLKKKEEELSQLNSKLEDEQA-----------LRAQLQKKIKELQARIEELEEELESERQARAKAEKQ-RRDLSEE 75 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3444444444445555555553333 344566777778888888888888888877776666 5788889
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 473 TEELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKL 552 (906)
Q Consensus 473 l~eL~~k~~~~~~~~~~qie~l~~~~~~l~k~~~~~le~l~~~~~s~~~~~~k~l~~~~~e~~~~~e~l~~~l~~~~~e~ 552 (906)
+.+|+.++.++.+....+++..++....+.+ ++.+|++.+..++..+..+++.|.+.+.++...++.+++.++.++.++
T Consensus 76 Le~l~~~Lee~~~~t~aq~E~~kkrE~El~~-Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k 154 (859)
T PF01576_consen 76 LEELKERLEEAGGATQAQIELNKKREAELAK-LRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEK 154 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhCcHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 002577 553 TAYAQQQREAHSRAVENARSVSKVTVNFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKKFEESAAN--EERQLLEKVAE 630 (906)
Q Consensus 553 ~~l~~q~~e~~~~~le~~~~~~~~~~~~~~~l~~~~~~l~~~leee~~~~~~~~~~~~~~~~e~~~~--e~~~l~~~i~~ 630 (906)
..|..++.+.... ++........+++.++.++.++.+++..+++..+..++......++..+.+.. .++.+..++..
T Consensus 155 ~~l~~e~~dL~~~-l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~ 233 (859)
T PF01576_consen 155 SQLEAELDDLQAQ-LDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQ 233 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHHHHHHHH-HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999977777776 99999999999999999999999999999999999999999999999998887 66666666664
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---hhhhhhhHHHHHHHHHHhhhhhHHhhhHhhhhhhHHHHHH
Q 002577 631 LLASSNARKKQLVQMAVQDLRESASSRTSQLQKEMST---MQDSTFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVV 707 (906)
Q Consensus 631 ll~~~~~rqk~~l~~~~~~l~~~~~~~~e~leee~~~---lq~~~s~~~~e~~~~~~k~E~~~~~~~~~~ee~k~~l~~~ 707 (906)
| +|.+ .+|...+..++.+|+++.-. ++..+..+..++...+..+|.+. +....++..-.++...
T Consensus 234 l-----~r~k-------~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~-e~k~~l~~qlsk~~~E 300 (859)
T PF01576_consen 234 L-----QREK-------SSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEE-EAKSELERQLSKLNAE 300 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred H-----HHHH-------HHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHhhH
Confidence 3 3333 34555677777888888755 88888888888888888886333 4455555555566667
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhHhHHHHHH--chHHhhHHHHHHHHhhHHHHHHhHH
Q 002577 708 LQNCLKQAKMGAQQ-WRTAQESLLNLEKNNVAAVDSIVR--GGMEANQNIHARFSSAVSTALQDAD 770 (906)
Q Consensus 708 lq~~~~~~~~~~~k-~~~~eks~~~L~~~~~~eldd~~~--~~~~~n~~~lekkq~~fd~~~~e~~ 770 (906)
|.+....++..... ...++.++.+|. ..|.++.. +...+.+..+++.-..+..-+.+..
T Consensus 301 l~~~k~K~e~e~~~~~EelEeaKKkL~----~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~ 362 (859)
T PF01576_consen 301 LEQWKKKYEEEAEQRTEELEEAKKKLE----RKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLT 362 (859)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666665444 677888999998 66666665 4455555556666555544443333
No 34
>PRK02224 chromosome segregation protein; Provisional
Probab=98.99 E-value=0.00051 Score=87.35 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHHH
Q 002577 263 IKDLYSEIDRLKQEVY 278 (906)
Q Consensus 263 ik~l~~Ei~~Lk~el~ 278 (906)
.+.+...+..++..|.
T Consensus 182 ~~~~~~~~~~~~~~l~ 197 (880)
T PRK02224 182 LSDQRGSLDQLKAQIE 197 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 35
>PRK02224 chromosome segregation protein; Provisional
Probab=98.92 E-value=0.00093 Score=84.96 Aligned_cols=13 Identities=0% Similarity=-0.156 Sum_probs=7.3
Q ss_pred hHHHHHHhhhhhh
Q 002577 817 VEITENAGKCLLN 829 (906)
Q Consensus 817 ~~i~~~~~~~~~~ 829 (906)
..|...+..+|..
T Consensus 737 ~~~~~~~~~~~~~ 749 (880)
T PRK02224 737 ETLERMLNETFDL 749 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 4555666666554
No 36
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.79 E-value=0.0025 Score=82.01 Aligned_cols=62 Identities=26% Similarity=0.302 Sum_probs=33.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhhcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 260 SAMIKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNS 330 (906)
Q Consensus 260 ~~~ik~l~~Ei~~Lk~el~~~r~kn~~~~~~e~~~~~e~e~~~~~eki~~le~~l~~~e~~l~~L~~~~~~ 330 (906)
...++.+..++..|..++.+.+..++- ......-..++++.+...+.....++..|.+.+..
T Consensus 653 ~~~~~~l~e~~~~l~~ev~~ir~~l~k---------~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~ 714 (1822)
T KOG4674|consen 653 RENLKKLQEDFDSLQKEVTAIRSQLEK---------LKNELNLAKEKLENLEKNLELTKEEVETLEERNKN 714 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888877755432 11111112345555555555555555555444443
No 37
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.74 E-value=0.0044 Score=81.77 Aligned_cols=23 Identities=9% Similarity=0.226 Sum_probs=13.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhh
Q 002577 261 AMIKDLYSEIDRLKQEVYAAREK 283 (906)
Q Consensus 261 ~~ik~l~~Ei~~Lk~el~~~r~k 283 (906)
..+..+..++..+..++......
T Consensus 605 ~~l~~~~~~l~~~~~eL~~~~~~ 627 (1311)
T TIGR00606 605 QNKNHINNELESKEEQLSSYEDK 627 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666655443
No 38
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.67 E-value=0.0057 Score=78.97 Aligned_cols=50 Identities=12% Similarity=0.134 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhh---HHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhHHh
Q 002577 642 LVQMAVQDLRESASSRT---SQLQKEMSTMQDSTFSVKAEWSAHMNKTESHYLE 692 (906)
Q Consensus 642 ~l~~~~~~l~~~~~~~~---e~leee~~~lq~~~s~~~~e~~~~~~k~E~~~~~ 692 (906)
-+..++..++.++.-++ ..+..+++.....+.++..+...|+.++ .+...
T Consensus 1247 El~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~-q~L~~ 1299 (1822)
T KOG4674|consen 1247 ELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRN-QDLLE 1299 (1822)
T ss_pred HHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 34444555555544433 3344444446667788999999999877 34444
No 39
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.59 E-value=0.01 Score=78.26 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=17.1
Q ss_pred ccccchhHHHHHHhhhhhhhcc
Q 002577 811 GHYHKIVEITENAGKCLLNEYM 832 (906)
Q Consensus 811 ~~~~~~~~i~~~~~~~~~~~y~ 832 (906)
-|+..+.+|...+......-|.
T Consensus 1134 ~~~~~~~~~n~~~~~~w~~~~~ 1155 (1311)
T TIGR00606 1134 FHSMKMEEINKIIRDLWRSTYR 1155 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 6888899998888877666554
No 40
>PF13931 Microtub_bind: Kinesin-associated microtubule-binding
Probab=98.59 E-value=2.6e-08 Score=94.00 Aligned_cols=40 Identities=25% Similarity=0.446 Sum_probs=36.1
Q ss_pred cccCCCCCCCccccCcCCCchhhhccCCccHHHHHHhhccccCc
Q 002577 832 MVDEPSCSTPRKRSFNLPSMASIEELRTPAFEELLRSFWDVKSS 875 (906)
Q Consensus 832 ~~~~~t~~tp~~~~~~~p~~~sie~~rt~~~~~ll~~~~~~~~~ 875 (906)
.+|.|||.||+|+.|.||+.+ |||.||+.||++||.....
T Consensus 3 ~~~~pTG~TP~rk~y~YP~~L----~~T~ph~~ll~~~r~~~~~ 42 (143)
T PF13931_consen 3 KEYVPTGTTPQRKEYQYPRTL----PRTEPHERLLRRLREEQEE 42 (143)
T ss_pred ccccCCCCCCCcccccCCCcc----CCCCcHHHHHHHHHhccch
Confidence 346699999999999999998 9999999999999988653
No 41
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.58 E-value=0.0056 Score=74.54 Aligned_cols=124 Identities=22% Similarity=0.273 Sum_probs=82.2
Q ss_pred cHHHHhHHHHHHHHHHHHHHHHHHhhcCCcCCc-hhh-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 258 MKSAMIKDLYSEIDRLKQEVYAAREKNGIYIPR-DRY-LQEEAE---KKAMAEKIERMELESESKDKQLMELQELYNSQL 332 (906)
Q Consensus 258 ~~~~~ik~l~~Ei~~Lk~el~~~r~kn~~~~~~-e~~-~~~e~e---~~~~~eki~~le~~l~~~e~~l~~L~~~~~~~~ 332 (906)
.+..-|..|...+..+..+|..++...++...+ +.. .+++.. ...+..++..+..++...+.++..+...+....
T Consensus 235 ~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~ 314 (775)
T PF10174_consen 235 EKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLE 314 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888999999988766543322 222 123322 234567788888888888888888888777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 333 LLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLL 381 (906)
Q Consensus 333 ~~~~eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l~ 381 (906)
....++..-+..++..+........-|......+...|.++...+....
T Consensus 315 ~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~ 363 (775)
T PF10174_consen 315 EQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQ 363 (775)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666555544433
No 42
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.57 E-value=0.0056 Score=74.00 Aligned_cols=105 Identities=17% Similarity=0.128 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHhhH---HHHHHHHhhhhhhhhHHHHHHHHHHhhhhhHHhhhHhhhhhhHHHHHHHHHHHHHHHH
Q 002577 641 QLVQMAVQDLRESASSRTS---QLQKEMSTMQDSTFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVLQNCLKQAKM 717 (906)
Q Consensus 641 ~~l~~~~~~l~~~~~~~~e---~leee~~~lq~~~s~~~~e~~~~~~k~E~~~~~~~~~~ee~k~~l~~~lq~~~~~~~~ 717 (906)
......++....++...++ ..++++.+.++.+..+..++.+.-++.|.=-...+..++ .-....+.+++
T Consensus 1580 ~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~--------~A~~a~~~a~s 1651 (1758)
T KOG0994|consen 1580 GEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSA--------EAKQAEKTAGS 1651 (1758)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH--------HHHHHHHHHHH
Confidence 3444445555544444333 344555557777777777777766655422222222222 22334445555
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhHHHHHHchHHhhHHH
Q 002577 718 GAQQWRTAQESLLNLEKNNVAAVDSIVRGGMEANQNI 754 (906)
Q Consensus 718 ~~~k~~~~eks~~~L~~~~~~eldd~~~~~~~~n~~~ 754 (906)
+.....+++....-|| .....++.+...+...+...
T Consensus 1652 a~~~A~~a~q~~~~lq-~~~~~~~~l~~~r~~g~~~a 1687 (1758)
T KOG0994|consen 1652 AKEQALSAEQGLEILQ-KYYELVDRLLEKRMEGSQAA 1687 (1758)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcchhH
Confidence 5555555555555554 34444555555444433333
No 43
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.54 E-value=0.013 Score=76.59 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=10.4
Q ss_pred hhhhhhhHHHHHHHHHHhhhh
Q 002577 668 MQDSTFSVKAEWSAHMNKTES 688 (906)
Q Consensus 668 lq~~~s~~~~e~~~~~~k~E~ 688 (906)
+...+...+.+...|....+.
T Consensus 690 l~~~l~~~~~e~~~~~~~~~~ 710 (1201)
T PF12128_consen 690 LEEELKQLKQELEELLEELKE 710 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555554443
No 44
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=98.48 E-value=0.011 Score=72.67 Aligned_cols=54 Identities=11% Similarity=-0.006 Sum_probs=35.8
Q ss_pred cccchhHHHHHHhhhhhhhccccCCCCCCCccccCcCCCchhhhccCCccHHHHHHhhccc
Q 002577 812 HYHKIVEITENAGKCLLNEYMVDEPSCSTPRKRSFNLPSMASIEELRTPAFEELLRSFWDV 872 (906)
Q Consensus 812 ~~~~~~~i~~~~~~~~~~~y~~~~~t~~tp~~~~~~~p~~~sie~~rt~~~~~ll~~~~~~ 872 (906)
....+..........-..-| .|++.+|....+.+|... -++.|+..++..++.+
T Consensus 900 ~~s~~~~~~~~~~~~~~~i~---t~~~~~~~~~~~~~~~t~----~~~~~~~~~~~~l~~~ 953 (1041)
T KOG0243|consen 900 FLSLLNSKLNSFDVLTNSIV---TPHSILLKLDDDVLPETL----VIISPSLELLGELFQD 953 (1041)
T ss_pred HHHHHhHHHhhhhhcccccc---ccccccccccccccccch----HhhcccHHHHHHhhcc
Confidence 33444444444444444444 499999999999999998 5666666666666653
No 45
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.38 E-value=0.0033 Score=72.66 Aligned_cols=123 Identities=21% Similarity=0.247 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 319 KQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTEL 398 (906)
Q Consensus 319 ~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l~~~e~~l~~~~~~L~~~l 398 (906)
.++......++.....+..++.++.+++.+++.+...+.+.+.........+......++.++....-+......+...+
T Consensus 92 ~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~ 171 (546)
T KOG0977|consen 92 AELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDEL 171 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555555555555554444444333333333333333333333332222333333444444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 399 ENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILH 441 (906)
Q Consensus 399 ~~~~~di~~L~~klerk~~~~~~n~~~~~~~~~eL~~~~~~l~ 441 (906)
..+..++..|...|.+-++....-.-.+.+++..++.++++|.
T Consensus 172 ~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~ 214 (546)
T KOG0977|consen 172 KRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELA 214 (546)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4444444555555544444333333344555555555555554
No 46
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.34 E-value=0.036 Score=72.52 Aligned_cols=51 Identities=18% Similarity=0.096 Sum_probs=27.0
Q ss_pred CCCeEEcCcEEEEeCCHHHHHHHHHhhhcccccccc--cCC-----CCCCCCcceEEE
Q 002577 79 KGGVFVRGLEEEIVTTADEIYKILEKGSAKRRTAET--LLN-----KQSSRSHSIFSI 129 (906)
Q Consensus 79 ~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t--~~n-----~~SSRSH~if~i 129 (906)
+|+++|.|-.-+==+|.--++-+|-.....|-+..+ ..+ -..+-|+.||-.
T Consensus 17 DG~t~i~GTNG~GKTTlLRlip~FYGa~p~rlv~k~~~rksF~~yYLP~~nSyIIYEY 74 (1201)
T PF12128_consen 17 DGHTHICGTNGVGKTTLLRLIPFFYGADPSRLVPKTSGRKSFDDYYLPYSNSYIIYEY 74 (1201)
T ss_pred CCceeeecCCCCcHHHHHHHHHHhcCCCccccCCccchhhhHHHHcCCCCCceEEEee
Confidence 455666665555445555666666655555555444 111 123456777654
No 47
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.17 E-value=0.051 Score=67.16 Aligned_cols=68 Identities=19% Similarity=0.113 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHh---hhhhhhhHHHHHHHHHHhhhhhHHhhhHhhhhhhHHHHHHHHHHH
Q 002577 643 VQMAVQDLRESASSRTSQLQKEMST---MQDSTFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVLQNCL 712 (906)
Q Consensus 643 l~~~~~~l~~~~~~~~e~leee~~~---lq~~~s~~~~e~~~~~~k~E~~~~~~~~~~ee~k~~l~~~lq~~~ 712 (906)
+...-+.+..+...+.-+||.+.++ +++.++.-..++.. .-+|.....-...+.++|++|+....++.
T Consensus 747 l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t--~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~ 817 (1317)
T KOG0612|consen 747 LRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNT--KMLEKQLKKLLDELAELKKQLEEENAQLR 817 (1317)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334455556666667777777766 66666644444444 33444455555666666666665554443
No 48
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.10 E-value=0.11 Score=68.47 Aligned_cols=8 Identities=0% Similarity=0.011 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 002577 95 ADEIYKIL 102 (906)
Q Consensus 95 ~~e~~~ll 102 (906)
.-+++.++
T Consensus 39 ll~ai~~~ 46 (1179)
T TIGR02168 39 IVDAIRWV 46 (1179)
T ss_pred HHHHHHHH
Confidence 33444444
No 49
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.07 E-value=0.049 Score=63.25 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHH
Q 002577 639 KKQLVQMAVQDLRESASSRTSQLQK 663 (906)
Q Consensus 639 qk~~l~~~~~~l~~~~~~~~e~lee 663 (906)
.|.-|...-+.|.+.+..+...|+-
T Consensus 432 EKEql~~EkQeL~~yi~~Le~r~~~ 456 (546)
T PF07888_consen 432 EKEQLQEEKQELLEYIERLEQRLDK 456 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445444444443
No 50
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.04 E-value=0.079 Score=64.79 Aligned_cols=150 Identities=19% Similarity=0.258 Sum_probs=70.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhcCCcCCc-hhh--HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 262 MIKDLYSEIDRLKQEVYAAREKNGIYIPR-DRY--LQEE----------AEKKAMAEKIERMELESESKDKQLMELQELY 328 (906)
Q Consensus 262 ~ik~l~~Ei~~Lk~el~~~r~kn~~~~~~-e~~--~~~e----------~e~~~~~eki~~le~~l~~~e~~l~~L~~~~ 328 (906)
-+.++..|...|+.++.....+-|-.+.. +.+ .++. .+.....+...............+..|+..+
T Consensus 4 ql~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL 83 (775)
T PF10174_consen 4 QLERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL 83 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 35778888888888888766553322111 110 1111 1111122233333333333334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002577 329 NSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNL 408 (906)
Q Consensus 329 ~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L 408 (906)
..+.....|...+.........+.. +.........+......-...+..+..+.+++...+..++.++......+..|
T Consensus 84 -r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL 161 (775)
T PF10174_consen 84 -RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKL 161 (775)
T ss_pred -HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222333333333333333333 33334444444443344444445555566666666777777777777777777
Q ss_pred HHHHH
Q 002577 409 FAKIE 413 (906)
Q Consensus 409 ~~kle 413 (906)
.+.|+
T Consensus 162 ~e~L~ 166 (775)
T PF10174_consen 162 QEMLQ 166 (775)
T ss_pred HHHHh
Confidence 77663
No 51
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.01 E-value=0.014 Score=67.70 Aligned_cols=304 Identities=13% Similarity=0.099 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHhhhHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 491 IKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVENA 570 (906)
Q Consensus 491 ie~l~~~~~~l~k~~~~~le~l~~~~~s~~~~~~k~l~~~~~e~~~~~e~l~~~l~~~~~e~~~l~~q~~e~~~~~le~~ 570 (906)
|+-+..+.+.-.+ +..++..+...+......+..+++.-...+...+++..+..++++.++..+..++.+.-.+ ++.+
T Consensus 55 IekVR~LEaqN~~-L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~-~~~~ 132 (546)
T KOG0977|consen 55 IEKVRFLEAQNRK-LEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKK-LEKA 132 (546)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHH
Confidence 3434444444333 6667777777777777777777888888888888888888888888888888877777666 3333
Q ss_pred HhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhchHHHHHHHHHHHHH
Q 002577 571 RSVSKVTVNFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKKFEESAANEERQLLEKVAEL--LASSNARKKQLVQMAVQ 648 (906)
Q Consensus 571 ~~~~~~~~~~~~~l~~~~~~l~~~leee~~~~~~~~~~~~~~~~e~~~~e~~~l~~~i~~l--l~~~~~rqk~~l~~~~~ 648 (906)
.........-.......+++++..+.-..+-....-.+......++ ..+...|..+ ....++--+..+..+++
T Consensus 133 ~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en-----~rl~~~l~~~r~~ld~Etllr~d~~n~~q 207 (546)
T KOG0977|consen 133 EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAEN-----SRLREELARARKQLDDETLLRVDLQNRVQ 207 (546)
T ss_pred HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3222222222222333333333333333222222222222222222 2233333333 22333445578888999
Q ss_pred HHHHHHHHhhHHHHHHHHh----hhhhh---------hhHHHHHHHHHHhhhhhHHhhhHhhhhhhHHHHHHHHHHHHHH
Q 002577 649 DLRESASSRTSQLQKEMST----MQDST---------FSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVLQNCLKQA 715 (906)
Q Consensus 649 ~l~~~~~~~~e~leee~~~----lq~~~---------s~~~~e~~~~~~k~E~~~~~~~~~~ee~k~~l~~~lq~~~~~~ 715 (906)
.|.++++......+.++.. .++-+ .++...|.+.+..||......-..+|. -...++++....+
T Consensus 208 ~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~---~Y~~kI~~i~~~~ 284 (546)
T KOG0977|consen 208 TLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIES---WYKRKIQEIRTSA 284 (546)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHhhh
Confidence 9999999998888887755 33333 345566777788887665554444443 2333444444433
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHHHHH---chHHhhHHHHHHHHhhHHHHHHhHHHhhHHHHHHHHhHHhhhHHHhh
Q 002577 716 KMGAQQWRTAQESLLNLEKNNVAAVDSIVR---GGMEANQNIHARFSSAVSTALQDADVADSNLLTSIDYSLQLDQDACA 792 (906)
Q Consensus 716 ~~~~~k~~~~eks~~~L~~~~~~eldd~~~---~~~~~n~~~lekkq~~fd~~~~e~~~~~~~~~~e~d~s~~e~r~~~t 792 (906)
+..+........-+.++- ..++.+.. +.. .-.+.+++...-+.-.+++-...|+..+.+.|+.-.+.|+-|+
T Consensus 285 ~~~~~~~~~~rEEl~~~R----~~i~~Lr~klselE-~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~ 359 (546)
T KOG0977|consen 285 ERANVEQNYAREELRRIR----SRISGLRAKLSELE-SRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQ 359 (546)
T ss_pred ccccchhHHHHHHHHHHH----hcccchhhhhcccc-ccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 333333333333333332 22222222 222 2223355555555556666677777777777777777777777
Q ss_pred hhhhhhhhccchhhhhh
Q 002577 793 NLNSMIVPCCGDLRELK 809 (906)
Q Consensus 793 ~~~~~~~~~~e~l~~le 809 (906)
.+..-...+.+.--.|+
T Consensus 360 ~l~~Elq~LlD~ki~Ld 376 (546)
T KOG0977|consen 360 QLSVELQKLLDTKISLD 376 (546)
T ss_pred HHHHHHHHhhchHhHHH
Confidence 66655555555444444
No 52
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.00 E-value=0.046 Score=60.70 Aligned_cols=107 Identities=13% Similarity=0.225 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 002577 519 HSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVENARSVSKVTVNFFKTLDMHASNLTKIVEEA 598 (906)
Q Consensus 519 ~~~~~~k~l~~~~~e~~~~~e~l~~~l~~~~~e~~~l~~q~~e~~~~~le~~~~~~~~~~~~~~~l~~~~~~l~~~leee 598 (906)
..+.+...+...+.++...++++....+.+..+++.+..+..+.-.+ ++.. ......++.++..++..++++
T Consensus 44 ~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k-~e~e-------~~~~~~le~el~~lrk~ld~~ 115 (312)
T PF00038_consen 44 EVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRK-YEEE-------LAERKDLEEELESLRKDLDEE 115 (312)
T ss_dssp --HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHH-HHHH-------HHHHHHHHHHHhhhhhhhhhh
Confidence 33334444555666666666666666666666666666654444443 3322 223346666677777777777
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhh
Q 002577 599 QTVNDQKLFEFEKKFEESAANEERQLLEKVAELLASSNARKKQLVQMAVQDLRESASSRTSQLQKEMSTMQDS 671 (906)
Q Consensus 599 ~~~~~~~~~~~~~~~~e~~~~e~~~l~~~i~~ll~~~~~rqk~~l~~~~~~l~~~~~~~~e~leee~~~lq~~ 671 (906)
+..+..+..++..|.+++..++..+++++..++.+
T Consensus 116 --------------------------------------~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~ 150 (312)
T PF00038_consen 116 --------------------------------------TLARVDLENQIQSLKEELEFLKQNHEEEIEELREQ 150 (312)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred --------------------------------------hhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 66666666677777777777777777666664333
No 53
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.97 E-value=0.17 Score=66.20 Aligned_cols=124 Identities=23% Similarity=0.299 Sum_probs=55.0
Q ss_pred hhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 291 DRYLQEEAEKKAM-----AEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQ 365 (906)
Q Consensus 291 e~~~~~e~e~~~~-----~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~le~~l~~ 365 (906)
.+|..+..++..+ ..++.++...+...+..+..++..+.............+..++.++......+..++.....
T Consensus 213 ~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~ 292 (1163)
T COG1196 213 ERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLE 292 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555554444332 33344444444444455555554444444444444444444444444444444444333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002577 366 ANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIER 414 (906)
Q Consensus 366 ~~~~l~eke~~i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L~~kler 414 (906)
+...+.+.+..+..+......+......+...+......+..+...+..
T Consensus 293 ~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1163)
T COG1196 293 LKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEE 341 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333334344444444444444444444443
No 54
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.97 E-value=0.18 Score=66.36 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=24.8
Q ss_pred hhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002577 692 EDTSAVENGKKDLEVVLQNCLKQAKMGAQQWRTAQESLLNL 732 (906)
Q Consensus 692 ~~~~~~ee~k~~l~~~lq~~~~~~~~~~~k~~~~eks~~~L 732 (906)
..+..+......+...|.++.........+|..+......|
T Consensus 837 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 877 (1486)
T PRK04863 837 AELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSAL 877 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445566666677777766666666666666654444
No 55
>PRK03918 chromosome segregation protein; Provisional
Probab=97.94 E-value=0.16 Score=64.73 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHH
Q 002577 263 IKDLYSEIDRLKQEVY 278 (906)
Q Consensus 263 ik~l~~Ei~~Lk~el~ 278 (906)
++.+..++..+...+.
T Consensus 171 ~~~~~~~~~~l~~~l~ 186 (880)
T PRK03918 171 IKEIKRRIERLEKFIK 186 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555443
No 56
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.90 E-value=0.23 Score=65.37 Aligned_cols=8 Identities=38% Similarity=0.426 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 002577 95 ADEIYKIL 102 (906)
Q Consensus 95 ~~e~~~ll 102 (906)
..++..++
T Consensus 119 ~~~~~~~l 126 (1164)
T TIGR02169 119 LSEIHDFL 126 (1164)
T ss_pred HHHHHHHH
Confidence 44444444
No 57
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.84 E-value=0.085 Score=58.54 Aligned_cols=32 Identities=25% Similarity=0.481 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 002577 450 QQEQQLKDMEEDMQSFVSTKAEATEELRGRLG 481 (906)
Q Consensus 450 qqe~el~~l~~~~~~~~~~~~~~l~eL~~k~~ 481 (906)
.++..+..+...+.-....|...+.+|+.++.
T Consensus 121 ~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~ 152 (312)
T PF00038_consen 121 DLENQIQSLKEELEFLKQNHEEEIEELREQIQ 152 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSTT--
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 34555666666665555556666666666553
No 58
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.77 E-value=0.22 Score=61.01 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=8.3
Q ss_pred HHHHHHHhhHHHHHHHHh
Q 002577 650 LRESASSRTSQLQKEMST 667 (906)
Q Consensus 650 l~~~~~~~~e~leee~~~ 667 (906)
+...++..++.|++...+
T Consensus 1561 v~~~ae~V~eaL~~Ad~A 1578 (1758)
T KOG0994|consen 1561 VKGQAEDVVEALEEADVA 1578 (1758)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444445555554444
No 59
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.74 E-value=0.19 Score=59.37 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 700 GKKDLEVVLQNCLKQAKMGAQQWRTAQES 728 (906)
Q Consensus 700 ~k~~l~~~lq~~~~~~~~~~~k~~~~eks 728 (906)
.++|+...+....-..+.-.++|.-++..
T Consensus 477 ~qrKVeqe~emlKaen~rqakkiefmkEe 505 (1265)
T KOG0976|consen 477 KQRKVEQEYEMLKAENERQAKKIEFMKEE 505 (1265)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666655555556666555544
No 60
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.70 E-value=0.19 Score=58.49 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 002577 394 LRTELENAASDVSNLFAKI 412 (906)
Q Consensus 394 L~~~l~~~~~di~~L~~kl 412 (906)
+...+..+..++..|..+.
T Consensus 218 ~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 218 ARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 61
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.68 E-value=0.21 Score=58.16 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhHHHHHHHHh---hhhhhhhHHHHHHHHHHhhhhhHHhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 648 QDLRESASSRTSQLQKEMST---MQDSTFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVLQNCLKQAKMGAQQWRT 724 (906)
Q Consensus 648 ~~l~~~~~~~~e~leee~~~---lq~~~s~~~~e~~~~~~k~E~~~~~~~~~~ee~k~~l~~~lq~~~~~~~~~~~k~~~ 724 (906)
.-|+.+...++.+++.+-.. ..++...++.+++.....| . .--.+..+.|.+....+|...-+++....+...
T Consensus 707 sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~-~---~le~e~r~~k~~~~q~lq~~ll~ve~~~k~~e~ 782 (961)
T KOG4673|consen 707 SLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRA-N---QLEVEIRELKRKHKQELQEVLLHVELIQKDLER 782 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence 44566666777777777644 6666677777777765555 1 222333445888888999888888887777666
Q ss_pred HHHHHHHhh
Q 002577 725 AQESLLNLE 733 (906)
Q Consensus 725 ~eks~~~L~ 733 (906)
...+...|.
T Consensus 783 ~~~~~~~le 791 (961)
T KOG4673|consen 783 EKASRLDLE 791 (961)
T ss_pred CHHHHhhcc
Confidence 555554444
No 62
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.60 E-value=0.35 Score=58.83 Aligned_cols=53 Identities=25% Similarity=0.329 Sum_probs=34.2
Q ss_pred CCChHHHHHHHHHHHHhccCcc-ccccchhccHHHHhHHHHHHHHHHHHHHHHHHhhcCCcC
Q 002577 228 IHCLEETLSTLDYAHRAKNIKN-KPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGIYI 288 (906)
Q Consensus 228 ~~~~~eTlsTL~fa~rak~i~n-~p~~n~~~~~~~~ik~l~~Ei~~Lk~el~~~r~kn~~~~ 288 (906)
..++..|+.+|+- +|+. ...+ -.+...+.++..|++.|+.++..+|+.++-++
T Consensus 172 ~~hL~velAdle~-----kir~LrqEl---EEK~enll~lr~eLddleae~~klrqe~~e~l 225 (1195)
T KOG4643|consen 172 NLHLEVELADLEK-----KIRTLRQEL---EEKFENLLRLRNELDDLEAEISKLRQEIEEFL 225 (1195)
T ss_pred hHHHHHHHHHHHH-----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778777652 1111 1111 13456788899999999999999988765443
No 63
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.55 E-value=0.7 Score=60.89 Aligned_cols=6 Identities=33% Similarity=0.750 Sum_probs=2.5
Q ss_pred cccCCc
Q 002577 153 DLAGSE 158 (906)
Q Consensus 153 DLAGsE 158 (906)
++||..
T Consensus 161 ~~~g~~ 166 (1164)
T TIGR02169 161 EIAGVA 166 (1164)
T ss_pred HHhCHH
Confidence 344443
No 64
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.52 E-value=0.32 Score=56.17 Aligned_cols=11 Identities=27% Similarity=0.432 Sum_probs=4.5
Q ss_pred HHhhHhHHHHH
Q 002577 505 SRSTFGDLNSE 515 (906)
Q Consensus 505 ~~~~le~l~~~ 515 (906)
.+.+++.+-..
T Consensus 490 ~~~E~e~le~~ 500 (581)
T KOG0995|consen 490 CRKEIEKLEEE 500 (581)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 65
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.47 E-value=0.6 Score=58.22 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=15.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 002577 259 KSAMIKDLYSEIDRLKQEVYAAR 281 (906)
Q Consensus 259 ~~~~ik~l~~Ei~~Lk~el~~~r 281 (906)
...+.+.|.+.|.+++.+...+.
T Consensus 463 ~~~~~keL~e~i~~lk~~~~el~ 485 (1317)
T KOG0612|consen 463 LEEMDKELEETIEKLKSEESELQ 485 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888876666555
No 66
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.46 E-value=0.11 Score=63.36 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=18.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHh
Q 002577 260 SAMIKDLYSEIDRLKQEVYAARE 282 (906)
Q Consensus 260 ~~~ik~l~~Ei~~Lk~el~~~r~ 282 (906)
...+.+|..+|.+|+.+|...|.
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq 439 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQ 439 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhh
Confidence 34567899999999999987774
No 67
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.46 E-value=0.5 Score=56.96 Aligned_cols=44 Identities=18% Similarity=0.140 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 304 AEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEK 347 (906)
Q Consensus 304 ~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~ 347 (906)
++.+...+..+......+.+|...-.........+...-+.+.+
T Consensus 111 ~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk 154 (569)
T PRK04778 111 ESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRK 154 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333333333333333333333
No 68
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.43 E-value=0.53 Score=56.60 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 002577 265 DLYSEIDRLKQEVYAAREK 283 (906)
Q Consensus 265 ~l~~Ei~~Lk~el~~~r~k 283 (906)
.|+..+..|...|..+|.+
T Consensus 228 eLr~QvrdLtEkLetlR~k 246 (1243)
T KOG0971|consen 228 ELRAQVRDLTEKLETLRLK 246 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3666677777777777644
No 69
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.39 E-value=0.53 Score=55.73 Aligned_cols=71 Identities=8% Similarity=0.090 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHh---hhhhhhhHHHHHHHHHHhhhhhHHhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002577 647 VQDLRESASSRTSQLQKEMST---MQDSTFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVLQNCLKQAKMGAQQWR 723 (906)
Q Consensus 647 ~~~l~~~~~~~~e~leee~~~---lq~~~s~~~~e~~~~~~k~E~~~~~~~~~~ee~k~~l~~~lq~~~~~~~~~~~k~~ 723 (906)
+...+.|....+.-|.+..+. |...++.+..++..|..=+|.. +-++..-+.+|.+-++-..+.-.
T Consensus 405 ~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~a-----------egsrrraIeQcnemv~rir~l~~ 473 (1265)
T KOG0976|consen 405 LEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHA-----------EGSRRRAIEQCNEMVDRIRALMD 473 (1265)
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhh-----------hhhHhhHHHHHHHHHHHHHHHhh
Confidence 445555666666666666655 6666666777777765555321 23455667777777777777666
Q ss_pred HHHHH
Q 002577 724 TAQES 728 (906)
Q Consensus 724 ~~eks 728 (906)
++++-
T Consensus 474 sle~q 478 (1265)
T KOG0976|consen 474 SLEKQ 478 (1265)
T ss_pred Chhhh
Confidence 66654
No 70
>PRK03918 chromosome segregation protein; Provisional
Probab=97.33 E-value=0.99 Score=57.64 Aligned_cols=9 Identities=11% Similarity=-0.167 Sum_probs=4.1
Q ss_pred CHHHHHHHH
Q 002577 94 TADEIYKIL 102 (906)
Q Consensus 94 s~~e~~~ll 102 (906)
|.-+++.+.
T Consensus 38 til~ai~~~ 46 (880)
T PRK03918 38 SILEAILVG 46 (880)
T ss_pred HHHHHHHHH
Confidence 344555443
No 71
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.33 E-value=0.58 Score=54.92 Aligned_cols=58 Identities=12% Similarity=0.113 Sum_probs=45.0
Q ss_pred HHHHHHhHHHhhHHHHHHHHhHHhhhHHHhhhhhhhhhhccchhhhhhhccccchhHHHHHH
Q 002577 762 VSTALQDADVADSNLLTSIDYSLQLDQDACANLNSMIVPCCGDLRELKGGHYHKIVEITENA 823 (906)
Q Consensus 762 fd~~~~e~~~~~~~~~~e~d~s~~e~r~~~t~~~~~~~~~~e~l~~le~~~~~~~~~i~~~~ 823 (906)
.-+++...+.-|+.+..+.|+=...-....++..+.+.+++-.|..+..+ +..|..++
T Consensus 705 MVALMEKHK~qYDkiVEEkDaEL~~~k~KE~E~~s~k~sLE~ELs~lk~e----l~slK~QL 762 (786)
T PF05483_consen 705 MVALMEKHKHQYDKIVEEKDAELGLYKKKEQEQSSHKASLELELSNLKNE----LSSLKKQL 762 (786)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHH
Confidence 34566777888999999999999999999999999999888877776653 44444443
No 72
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.27 E-value=0.98 Score=56.23 Aligned_cols=155 Identities=12% Similarity=0.111 Sum_probs=75.8
Q ss_pred hhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHch--HHhhHHHHHHHHhhHHHHHHhH
Q 002577 692 EDTSAVENGKKDLEVVLQNCLKQAKMGAQQWRTAQESLLNLEKNNVAAVDSIVRGG--MEANQNIHARFSSAVSTALQDA 769 (906)
Q Consensus 692 ~~~~~~ee~k~~l~~~lq~~~~~~~~~~~k~~~~eks~~~L~~~~~~eldd~~~~~--~~~n~~~lekkq~~fd~~~~e~ 769 (906)
++...++..-.++...++........+...+..+++-..++. .+++++..+. ......-+++--..+...+.+.
T Consensus 914 ~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e----~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~ 989 (1293)
T KOG0996|consen 914 EQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTE----KELDDLTEELKGLEEKAAELEKEYKEAEESLKEI 989 (1293)
T ss_pred HHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443444444444444444444444555555555555 5666666522 3333334556666666666677
Q ss_pred HHhhHHHHHHHHhHHhhhHHHhhhhhhhhhhccchhhhhhhccccchhHHHHHHhhhhhhhccccCCCCCCCccccCcCC
Q 002577 770 DVADSNLLTSIDYSLQLDQDACANLNSMIVPCCGDLRELKGGHYHKIVEITENAGKCLLNEYMVDEPSCSTPRKRSFNLP 849 (906)
Q Consensus 770 ~~~~~~~~~e~d~s~~e~r~~~t~~~~~~~~~~e~l~~le~~~~~~~~~i~~~~~~~~~~~y~~~~~t~~tp~~~~~~~p 849 (906)
+..+.++..+++...+...++..+...+.+-. +.....+.++.+.+--. ..|+.+---|.+|..++.--|
T Consensus 990 k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~--------e~~~~~l~e~~~~~~~~--~k~~~~l~~~~~tE~~~~~~~ 1059 (1293)
T KOG0996|consen 990 KKELRDLKSELENIKKSENELKAERIDIENKL--------EAINGELNEIESKIKQP--EKELKKLSLCNMTETRPQIEL 1059 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH--------HHHHHHHHHHHhhhhhH--HHhhCccccccchhhcccccc
Confidence 77777666666666655555544222222211 12334444444443221 145545556666655554444
Q ss_pred CchhhhccCCc
Q 002577 850 SMASIEELRTP 860 (906)
Q Consensus 850 ~~~sie~~rt~ 860 (906)
...+-|.+=..
T Consensus 1060 ~~~~~Eeleae 1070 (1293)
T KOG0996|consen 1060 DVESPEELEAE 1070 (1293)
T ss_pred ccCChHHHHhh
Confidence 44444444333
No 73
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.26 E-value=0.62 Score=53.87 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=12.8
Q ss_pred eEEeecCCCCCChHHHHHHHHHHH
Q 002577 219 CIIATVSPSIHCLEETLSTLDYAH 242 (906)
Q Consensus 219 ~~I~~isp~~~~~~eTlsTL~fa~ 242 (906)
.+++.++|. ++-.-|..|-.--
T Consensus 147 s~~a~gspH--~WP~iL~mlhWlv 168 (581)
T KOG0995|consen 147 SLQAAGSPH--NWPHILGMLHWLV 168 (581)
T ss_pred hhccCCCCC--ccHHHHHHHHHHH
Confidence 666666664 5666666654433
No 74
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.25 E-value=0.83 Score=55.08 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=21.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHhh--------hHHhhHhHHHHHHHHHHHHH
Q 002577 482 KLKAMYGSGIKALDGIAGELDG--------NSRSTFGDLNSEVSKHSHAL 523 (906)
Q Consensus 482 ~~~~~~~~qie~l~~~~~~l~k--------~~~~~le~l~~~~~s~~~~~ 523 (906)
.+...+=.|++.|+.-+..+.. .+...+..+..++......+
T Consensus 223 ~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l 272 (569)
T PRK04778 223 ELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALL 272 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 3333444566666666665553 24455555555555444443
No 75
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.18 E-value=0.96 Score=54.53 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002577 701 KKDLEVVLQNCLKQAKMGAQQWRTAQESLLNLE 733 (906)
Q Consensus 701 k~~l~~~lq~~~~~~~~~~~k~~~~eks~~~L~ 733 (906)
++.+..+..+..+++-....-|..-..-+.+|+
T Consensus 506 ~kel~~r~~aaqet~yDrdqTI~KfRelva~Lq 538 (1243)
T KOG0971|consen 506 RKELQKRVEAAQETVYDRDQTIKKFRELVAHLQ 538 (1243)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433344443
No 76
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.16 E-value=1.7 Score=57.05 Aligned_cols=11 Identities=18% Similarity=0.235 Sum_probs=6.1
Q ss_pred ccccccCCccc
Q 002577 150 NLVDLAGSENI 160 (906)
Q Consensus 150 ~lVDLAGsE~~ 160 (906)
.|-+-||.-..
T Consensus 160 iiEEaaGv~~y 170 (1163)
T COG1196 160 LIEEAAGVSKY 170 (1163)
T ss_pred HHHHHhchHHH
Confidence 55566665543
No 77
>PRK11637 AmiB activator; Provisional
Probab=97.02 E-value=1.1 Score=52.16 Aligned_cols=13 Identities=23% Similarity=0.225 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 002577 317 KDKQLMELQELYN 329 (906)
Q Consensus 317 ~e~~l~~L~~~~~ 329 (906)
.++++..++..+.
T Consensus 45 ~~~~l~~l~~qi~ 57 (428)
T PRK11637 45 NRDQLKSIQQDIA 57 (428)
T ss_pred hHHHHHHHHHHHH
Confidence 3344444444443
No 78
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.38 Score=56.84 Aligned_cols=17 Identities=18% Similarity=0.431 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHHHHHh
Q 002577 15 DAGVIPRAVKQIFDILE 31 (906)
Q Consensus 15 ~~Giipr~~~~lF~~~~ 31 (906)
..|+-+.++.+|+...+
T Consensus 43 qS~LP~~VLaqIWALsD 59 (1118)
T KOG1029|consen 43 QSGLPTPVLAQIWALSD 59 (1118)
T ss_pred hcCCChHHHHHHHHhhh
Confidence 35888889999987654
No 79
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.91 E-value=1.2 Score=54.45 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 524 EDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHS 564 (906)
Q Consensus 524 ~k~l~~~~~e~~~~~e~l~~~l~~~~~e~~~l~~q~~e~~~ 564 (906)
+--|-..+.|+...++.++.++...+.|+..|...+.+...
T Consensus 617 KldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 617 KLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33466788899999999999999999988888775554443
No 80
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.89 E-value=1.6 Score=52.03 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002577 468 TKAEATEELRGRLGKLKAMYG 488 (906)
Q Consensus 468 ~~~~~l~eL~~k~~~~~~~~~ 488 (906)
.....+++|...+..+++.+.
T Consensus 169 ~~~~kve~L~~Ei~~lke~l~ 189 (522)
T PF05701_consen 169 ENEEKVEELSKEIIALKESLE 189 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556667666666666654
No 81
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.81 E-value=2.4 Score=52.96 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 379 NLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQM 428 (906)
Q Consensus 379 ~l~~~e~~l~~~~~~L~~~l~~~~~di~~L~~klerk~~~~~~n~~~~~~ 428 (906)
.+.+...++...-...+..++.+.+.+..|..+++.-+......+.+...
T Consensus 388 ~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~ 437 (1293)
T KOG0996|consen 388 SLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEK 437 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchh
Confidence 33444444555555666677777777777777766555554444444433
No 82
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.66 E-value=0.99 Score=47.40 Aligned_cols=106 Identities=21% Similarity=0.286 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 308 ERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEE--TEHALSDLEEKHRQANATIKEKDFLIANLLKSEK 385 (906)
Q Consensus 308 ~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~--~~~~l~~le~~l~~~~~~l~eke~~i~~l~~~e~ 385 (906)
+.+...+..++..+.+++..+.......+++...+...+.++.. ....+..|+..+..++..+...+..+..+.....
T Consensus 41 e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~ 120 (239)
T COG1579 41 EALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIE 120 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444443333333333333333333333311 1133344444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002577 386 ALVERAIELRTELENAASDVSNLFAKIE 413 (906)
Q Consensus 386 ~l~~~~~~L~~~l~~~~~di~~L~~kle 413 (906)
.+...+..++..+.....++.++...++
T Consensus 121 ~l~~~i~~l~~~~~~~e~~~~e~~~~~e 148 (239)
T COG1579 121 KLEKEIEDLKERLERLEKNLAEAEARLE 148 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333
No 83
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.61 E-value=1.3 Score=47.14 Aligned_cols=8 Identities=38% Similarity=0.509 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 002577 392 IELRTELE 399 (906)
Q Consensus 392 ~~L~~~l~ 399 (906)
..|...+.
T Consensus 95 ~~lE~~l~ 102 (237)
T PF00261_consen 95 EELEQQLK 102 (237)
T ss_dssp HHCHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 84
>PRK11637 AmiB activator; Provisional
Probab=96.51 E-value=2.4 Score=49.23 Aligned_cols=12 Identities=50% Similarity=0.706 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 002577 541 LQSSLYKQEEKL 552 (906)
Q Consensus 541 l~~~l~~~~~e~ 552 (906)
|...+...+.++
T Consensus 224 L~~~~~~~~~~l 235 (428)
T PRK11637 224 LESSLQKDQQQL 235 (428)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 85
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.51 E-value=2.6 Score=49.50 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=10.2
Q ss_pred ecCCCCCChHHHHHHHH
Q 002577 223 TVSPSIHCLEETLSTLD 239 (906)
Q Consensus 223 ~isp~~~~~~eTlsTL~ 239 (906)
.|||....|..-++||.
T Consensus 399 ~~ssl~~e~~QRva~lE 415 (961)
T KOG4673|consen 399 EVSSLREEYHQRVATLE 415 (961)
T ss_pred cccchHHHHHHHHHHHH
Confidence 45666666666666653
No 86
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.15 E-value=5.3 Score=49.31 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002577 541 LQSSLYKQEEKLTAYAQQ 558 (906)
Q Consensus 541 l~~~l~~~~~e~~~l~~q 558 (906)
++..+..++.+++.+.++
T Consensus 682 ~~~~~~~~q~el~~le~e 699 (1174)
T KOG0933|consen 682 AQKELRAIQKELEALERE 699 (1174)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 87
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.08 E-value=4.9 Score=48.34 Aligned_cols=146 Identities=17% Similarity=0.246 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 002577 264 KDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLL---TAELSE 340 (906)
Q Consensus 264 k~l~~Ei~~Lk~el~~~r~kn~~~~~~e~~~~~e~e~~~~~eki~~le~~l~~~e~~l~~L~~~~~~~~~~---~~eL~~ 340 (906)
..-..|+..|+.+|..++ .....++.+.+.+...+.++............+++..+.-..+. ..+-..
T Consensus 324 ~~~~~el~~l~~~l~~l~---------~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ 394 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELE---------SQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEE 394 (594)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 344566666666666655 23333444455555555556555555555555555544422211 112223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002577 341 KLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEE 420 (906)
Q Consensus 341 ~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L~~klerk~~~~~ 420 (906)
.+.+++.-+......+..+..+....+.-|.++-. .+......-..........++.+...+..+..++..|.....
T Consensus 395 ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r---~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~ 471 (594)
T PF05667_consen 395 NIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYR---RLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYK 471 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555554444444333322211 122111112223334445555555555555555555555433
Q ss_pred H
Q 002577 421 G 421 (906)
Q Consensus 421 ~ 421 (906)
+
T Consensus 472 q 472 (594)
T PF05667_consen 472 Q 472 (594)
T ss_pred H
Confidence 3
No 88
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.01 E-value=1.5 Score=42.07 Aligned_cols=107 Identities=21% Similarity=0.328 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 304 AEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKS 383 (906)
Q Consensus 304 ~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l~~~ 383 (906)
..++..+..++........+.+..|..+.....+.-..+..++..+..++..+..++.....+...+...+.. ....
T Consensus 23 ~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~s---w~~q 99 (132)
T PF07926_consen 23 EEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEAS---WEEQ 99 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHH
Confidence 4455666667777777788888999999999999999999999999999999999888888888777665443 4444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002577 384 EKALVERAIELRTELENAASDVSNLFAKIE 413 (906)
Q Consensus 384 e~~l~~~~~~L~~~l~~~~~di~~L~~kle 413 (906)
+..+...+..+...+.++.....-||+.|+
T Consensus 100 k~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 100 KEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666677777777777766666666665
No 89
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.01 E-value=5.4 Score=48.20 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002577 384 EKALVERAIELRTELENAASDVSNLFAKIERKDK 417 (906)
Q Consensus 384 e~~l~~~~~~L~~~l~~~~~di~~L~~klerk~~ 417 (906)
...|..+...|+...-.+..+.-+|.+.|..+..
T Consensus 162 N~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~ 195 (617)
T PF15070_consen 162 NRELKEQLAELQDAFVKLTNENMELTSALQSEQH 195 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 3444455555555555555554444444443333
No 90
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.84 E-value=4.3 Score=45.78 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 515 EVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREA 562 (906)
Q Consensus 515 ~~~s~~~~~~k~l~~~~~e~~~~~e~l~~~l~~~~~e~~~l~~q~~e~ 562 (906)
.+.+.+..++..|...++++...-+.-.+.+.++..|+..+.+++.+.
T Consensus 498 El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~l 545 (622)
T COG5185 498 ELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDL 545 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444555666666666666677777777777776655443
No 91
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.83 E-value=6.2 Score=47.50 Aligned_cols=45 Identities=9% Similarity=0.167 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhh--------hHHhhHhHHHHHHHHHHHHH
Q 002577 479 RLGKLKAMYGSGIKALDGIAGELDG--------NSRSTFGDLNSEVSKHSHAL 523 (906)
Q Consensus 479 k~~~~~~~~~~qie~l~~~~~~l~k--------~~~~~le~l~~~~~s~~~~~ 523 (906)
=+..+...+=.|++.|+.....+.. .+...++++..++......+
T Consensus 216 l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L 268 (560)
T PF06160_consen 216 LYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALL 268 (560)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3344444555677777766666664 24455555555555555444
No 92
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.75 E-value=7.7 Score=47.96 Aligned_cols=55 Identities=4% Similarity=0.068 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHchHHhhHHHHHHHHhhHHHH
Q 002577 707 VLQNCLKQAKMGAQQWRTAQESLLNLEKNNVAAVDSIVRGGMEANQNIHARFSSAVSTA 765 (906)
Q Consensus 707 ~lq~~~~~~~~~~~k~~~~eks~~~L~~~~~~eldd~~~~~~~~n~~~lekkq~~fd~~ 765 (906)
.|..|.........+...+++-+..++ ..+.++=....+++.-++++....|..+
T Consensus 988 mle~~E~~~~~lk~k~~~Ie~Dk~kI~----ktI~~lDe~k~~~L~kaw~~VN~dFG~I 1042 (1174)
T KOG0933|consen 988 MLERAEEKEAALKTKKEIIEKDKSKIK----KTIEKLDEKKREELNKAWEKVNKDFGSI 1042 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 555666666666666666776666665 3333333333445555555555555443
No 93
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.70 E-value=3.7 Score=44.00 Aligned_cols=70 Identities=11% Similarity=0.176 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHh---hhhhhhhHHHHHHHHHHhhhhhHHhhhHhhhhhhHHHHHHH
Q 002577 639 KKQLVQMAVQDLRESASSRTSQLQKEMST---MQDSTFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVL 708 (906)
Q Consensus 639 qk~~l~~~~~~l~~~~~~~~e~leee~~~---lq~~~s~~~~e~~~~~~k~E~~~~~~~~~~ee~k~~l~~~l 708 (906)
+...|..++.+++.+...++.+|++.... -++.+..+..+......+.-.+.-...--+|+.-+.|....
T Consensus 215 Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~ 287 (305)
T PF14915_consen 215 KQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINEC 287 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33688899999999999999999998865 45678888888877777654333334445666555554443
No 94
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.65 E-value=9 Score=48.05 Aligned_cols=133 Identities=20% Similarity=0.234 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 317 KDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRT 396 (906)
Q Consensus 317 ~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l~~~e~~l~~~~~~L~~ 396 (906)
.+.++..+...+..-+.....+..+++....++......+.+.+.++..+.......+.++.........+......+..
T Consensus 279 ~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~ 358 (1074)
T KOG0250|consen 279 VERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKE 358 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666777777777777777777777777777777766666666666666666666666666667
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHH
Q 002577 397 ELENAASDVSNLFAKIERKDKIEEGNRILI----QMFQSQLTQQLEILHKTVATSVT 449 (906)
Q Consensus 397 ~l~~~~~di~~L~~klerk~~~~~~n~~~~----~~~~~eL~~~~~~l~~~i~~~~~ 449 (906)
.+.+....+..+...+++....-...++.. ..-..+++..++.|...+..+..
T Consensus 359 ~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~ 415 (1074)
T KOG0250|consen 359 EIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE 415 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777766665555433333332 22334444555555555554443
No 95
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.65 E-value=8.2 Score=47.55 Aligned_cols=42 Identities=7% Similarity=0.118 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 524 EDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHSR 565 (906)
Q Consensus 524 ~k~l~~~~~e~~~~~e~l~~~l~~~~~e~~~l~~q~~e~~~~ 565 (906)
.+.+.....++.+.+.+....-+.++.++..+..++......
T Consensus 392 Dkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~ 433 (1200)
T KOG0964|consen 392 DKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEE 433 (1200)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555544444443
No 96
>PRK09039 hypothetical protein; Validated
Probab=95.59 E-value=4.1 Score=45.80 Aligned_cols=17 Identities=29% Similarity=0.223 Sum_probs=9.9
Q ss_pred EeecCCCCCChHHHHHHHHH
Q 002577 221 IATVSPSIHCLEETLSTLDY 240 (906)
Q Consensus 221 I~~isp~~~~~~eTlsTL~f 240 (906)
=++|+|+ |=+.++||=+
T Consensus 12 ~~~~wpg---~vd~~~~ll~ 28 (343)
T PRK09039 12 GVDYWPG---FVDALSTLLL 28 (343)
T ss_pred CCCCCch---HHHHHHHHHH
Confidence 3567775 4556666543
No 97
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.53 E-value=7.9 Score=46.61 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002577 424 ILIQMFQSQLTQQLEILHKTV 444 (906)
Q Consensus 424 ~~~~~~~~eL~~~~~~l~~~i 444 (906)
..+..++..+-.++.+|....
T Consensus 215 ~l~~~l~~~~P~ql~eL~~gy 235 (560)
T PF06160_consen 215 KLYKELQKEFPDQLEELKEGY 235 (560)
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 444444444555555555433
No 98
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.45 E-value=8.4 Score=46.36 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=26.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 402 ASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVA 445 (906)
Q Consensus 402 ~~di~~L~~klerk~~~~~~n~~~~~~~~~eL~~~~~~l~~~i~ 445 (906)
...+..|..-++....-.......|...+..|.+....|.....
T Consensus 393 e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~ 436 (594)
T PF05667_consen 393 EENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKAS 436 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 33445555555555555556666677777777766666665444
No 99
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.39 E-value=3.9 Score=42.21 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHH
Q 002577 472 ATEELRGRLGKLKAMYGSGIK 492 (906)
Q Consensus 472 ~l~eL~~k~~~~~~~~~~qie 492 (906)
++..+..++.+..+.-+..|.
T Consensus 179 ~~~~v~~~l~~~l~~KN~~I~ 199 (201)
T PF13851_consen 179 ALSQVSKKLEDVLDSKNQTIK 199 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 566666677666666555544
No 100
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=95.38 E-value=4.8 Score=43.08 Aligned_cols=204 Identities=16% Similarity=0.183 Sum_probs=122.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHh
Q 002577 578 VNFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKKFEESAANEERQLLEKVAELLASSNARKKQLVQMAVQDLRESASSR 657 (906)
Q Consensus 578 ~~~~~~l~~~~~~l~~~leee~~~~~~~~~~~~~~~~e~~~~e~~~l~~~i~~ll~~~~~rqk~~l~~~~~~l~~~~~~~ 657 (906)
...+..+...+..|...++.+.....+....++..++.........+..++. .+ ...++..+..|.+.|..+
T Consensus 33 e~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~-------~~-~~~~~~~l~~L~~ri~~L 104 (247)
T PF06705_consen 33 EQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQIS-------EK-QEQLQSRLDSLNDRIEAL 104 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-HHHHHHHHHHHHHHHHHH
Confidence 3455577778888888888888888888888998888887777777777766 43 356777888888888888
Q ss_pred hHHHHHHHHh----hhhhhhhHHHHHHHHHHhhhhhHHhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002577 658 TSQLQKEMST----MQDSTFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVLQNCLKQAKMGAQQWRTAQESLLNLE 733 (906)
Q Consensus 658 ~e~leee~~~----lq~~~s~~~~e~~~~~~k~E~~~~~~~~~~ee~k~~l~~~lq~~~~~~~~~~~k~~~~eks~~~L~ 733 (906)
...+.++... ++.....+..++......++.+-..+.+.=...-++|..........++......... ...|.
T Consensus 105 ~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~Ek~~Re~~---~~~l~ 181 (247)
T PF06705_consen 105 EEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQEKIEKEKNTRESK---LSELR 181 (247)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 8888877766 5555566788888888888777666555544445555555544444444333222222 22333
Q ss_pred hhhhHhHHHHHHchHHhhHHHHHHHHhhHHHHHHhHHHhhHHHHHHHHhHHhhhHHHhhhhhhhhhhccc
Q 002577 734 KNNVAAVDSIVRGGMEANQNIHARFSSAVSTALQDADVADSNLLTSIDYSLQLDQDACANLNSMIVPCCG 803 (906)
Q Consensus 734 ~~~~~eldd~~~~~~~~n~~~lekkq~~fd~~~~e~~~~~~~~~~e~d~s~~e~r~~~t~~~~~~~~~~e 803 (906)
.+++++.. .-....++++.. ++.|+...-..+..+..+=...+-+.---|...+.++.+
T Consensus 182 ----~~le~~~~----~~~~~~e~f~~~---v~~Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~yt~~lQ~ 240 (247)
T PF06705_consen 182 ----SELEEVKR----RREKGDEQFQNF---VLEEIAALKNALALESQEREQSDDDIVQALNHYTKALQD 240 (247)
T ss_pred ----HHHHHHHH----HHhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 33444443 112223333322 455555555555555544444443333334444444333
No 101
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.34 E-value=16 Score=48.87 Aligned_cols=19 Identities=37% Similarity=0.258 Sum_probs=12.4
Q ss_pred CCCC-CCccccccccccCCC
Q 002577 197 VPYR-DSKLTRLLRDSLGGK 215 (906)
Q Consensus 197 ipyR-dSkLT~lL~dsLgg~ 215 (906)
++|+ .+.+|+.|+++|...
T Consensus 205 iy~~i~~~i~~fl~~yll~e 224 (1486)
T PRK04863 205 LYGGISSAITRSLRDYLLPE 224 (1486)
T ss_pred HHhhHHHhHHHHHHHHcCCC
Confidence 3344 347888888888653
No 102
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.21 E-value=4.3 Score=41.60 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=16.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhc
Q 002577 262 MIKDLYSEIDRLKQEVYAAREKN 284 (906)
Q Consensus 262 ~ik~l~~Ei~~Lk~el~~~r~kn 284 (906)
-|+.|..++..+...+..++..|
T Consensus 13 ki~~L~n~l~elq~~l~~l~~EN 35 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKEN 35 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777777776554
No 103
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.10 E-value=7.8 Score=44.01 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 320 QLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKH 363 (906)
Q Consensus 320 ~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~le~~l 363 (906)
+..+|+..+..+......++.++..+...+....+.+.+++..+
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 33333333333333333333344444444444333333333333
No 104
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.02 E-value=10 Score=44.79 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=19.4
Q ss_pred HHHHHhccCccccccchhccHHHHhHHHHHHHHHHH
Q 002577 239 DYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLK 274 (906)
Q Consensus 239 ~fa~rak~i~n~p~~n~~~~~~~~ik~l~~Ei~~Lk 274 (906)
+|+.+-+..+-.+-.+.--.-..+++-++.||..|-
T Consensus 44 ~L~e~trefkk~~pe~k~k~~~~llK~yQ~EiD~Lt 79 (629)
T KOG0963|consen 44 RLAEETREFKKNTPEDKLKMVNPLLKSYQSEIDNLT 79 (629)
T ss_pred HHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333322222233467888888888774
No 105
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.63 E-value=13 Score=44.33 Aligned_cols=15 Identities=27% Similarity=0.306 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 002577 706 VVLQNCLKQAKMGAQ 720 (906)
Q Consensus 706 ~~lq~~~~~~~~~~~ 720 (906)
.+|+.....++.+.+
T Consensus 414 ~rL~aa~ke~eaaKa 428 (522)
T PF05701_consen 414 ERLEAALKEAEAAKA 428 (522)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555444444443
No 106
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=14 Score=44.38 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=18.8
Q ss_pred HHHHHHhhhhhhhccccCCCCCCCccccC
Q 002577 818 EITENAGKCLLNEYMVDEPSCSTPRKRSF 846 (906)
Q Consensus 818 ~i~~~~~~~~~~~y~~~~~t~~tp~~~~~ 846 (906)
+|+.+++=+. ..|.+--|.++||.-..+
T Consensus 734 el~gktGWFP-enyvEki~~~e~p~~v~P 761 (1118)
T KOG1029|consen 734 ELRGKTGWFP-ENYVEKIPAVETPGGVPP 761 (1118)
T ss_pred eeccccCcCc-HHHHhhcccCCCCCCCCc
Confidence 4555555443 458888888888876655
No 107
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.52 E-value=15 Score=44.51 Aligned_cols=65 Identities=25% Similarity=0.317 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 002577 533 EADSLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVENARSVSKVTVNFFKTLDMHASNLTKIVEEA 598 (906)
Q Consensus 533 e~~~~~e~l~~~l~~~~~e~~~l~~q~~e~~~~~le~~~~~~~~~~~~~~~l~~~~~~l~~~leee 598 (906)
|.+..+.+++..+...+...+.+-. --.+...+++..........+-...++..++++++.+..-
T Consensus 803 e~~~~l~~~q~e~~~~keq~~t~~~-~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~ 867 (970)
T KOG0946|consen 803 EESTRLQELQSELTQLKEQIQTLLE-RTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFG 867 (970)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhh
Confidence 3333344444444444444443333 3333444455555555555555555555556565554444
No 108
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.40 E-value=14 Score=43.77 Aligned_cols=77 Identities=14% Similarity=0.211 Sum_probs=42.4
Q ss_pred CCceeeEEeecCCCCCChHHHHHHHH--HHHHhccCccccccchhccHHHHhHHHHHHHHHHHHHHHHHHhhcCCcCCc
Q 002577 214 GKTKTCIIATVSPSIHCLEETLSTLD--YAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGIYIPR 290 (906)
Q Consensus 214 g~~kt~~I~~isp~~~~~~eTlsTL~--fa~rak~i~n~p~~n~~~~~~~~ik~l~~Ei~~Lk~el~~~r~kn~~~~~~ 290 (906)
|++..+=|..-+|++.-.....+++- |-..-...+....-+....-...+..+..++......+...+.++|+..+.
T Consensus 119 ~~s~vi~Is~~~~dP~~Aa~i~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~ 197 (498)
T TIGR03007 119 GRDNLFTISYEDKDPELAKDVVQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPD 197 (498)
T ss_pred CCCCeEEEEeeCCCHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence 45666666667787776666666642 222221111111101111112345677777777778888888889886553
No 109
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.35 E-value=8.6 Score=41.02 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 527 FKGIASEADSLLNDLQSSLYKQEEKLTAYAQ 557 (906)
Q Consensus 527 l~~~~~e~~~~~e~l~~~l~~~~~e~~~l~~ 557 (906)
|.....|+..++++|...++++..-+..+..
T Consensus 174 l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa 204 (265)
T COG3883 174 LVALQNELETQLNSLNSQKAEKNALIAALAA 204 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666655555554
No 110
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.23 E-value=12 Score=42.33 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=34.1
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhH
Q 002577 505 SRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVENARSVSKVTVNFFKTL 584 (906)
Q Consensus 505 ~~~~le~l~~~~~s~~~~~~k~l~~~~~e~~~~~e~l~~~l~~~~~e~~~l~~q~~e~~~~~le~~~~~~~~~~~~~~~l 584 (906)
+..++.+++..........++.+...--+++.+..++.+-..++-++... +-..+.+|+-.+
T Consensus 538 lE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~~r~~i~k~V~~------------------v~~~~~~fk~~I 599 (622)
T COG5185 538 LEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVIH------------------VIDITSKFKINI 599 (622)
T ss_pred HHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHhhhhH
Confidence 33344444443333444444444444444444444444444443333332 223344555555
Q ss_pred HHHHHHHHHHHHHH
Q 002577 585 DMHASNLTKIVEEA 598 (906)
Q Consensus 585 ~~~~~~l~~~leee 598 (906)
..++.+++..+..+
T Consensus 600 Qssledl~~~l~k~ 613 (622)
T COG5185 600 QSSLEDLENELGKV 613 (622)
T ss_pred HhhHHHHHHHHHHH
Confidence 55555555544433
No 111
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.17 E-value=0.041 Score=68.26 Aligned_cols=10 Identities=10% Similarity=0.175 Sum_probs=0.0
Q ss_pred cccccccccC
Q 002577 204 LTRLLRDSLG 213 (906)
Q Consensus 204 LT~lL~dsLg 213 (906)
+-+++.+++.
T Consensus 23 ~~~~~~~~~~ 32 (722)
T PF05557_consen 23 PNNFIFQRLS 32 (722)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3444444444
No 112
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.96 E-value=26 Score=45.04 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHhhhcccc--cccccCCCCCCCCcceEEEEEE
Q 002577 93 TTADEIYKILEKGSAKRR--TAETLLNKQSSRSHSIFSITIH 132 (906)
Q Consensus 93 ~s~~e~~~ll~~g~~~R~--~~~t~~n~~SSRSH~if~i~v~ 132 (906)
+|.=|++.|---|...|. .....+....+++ +.+.+++.
T Consensus 39 SSIldAI~~ALyG~~~~~~~~~~~~~i~~g~~~-~~V~l~F~ 79 (908)
T COG0419 39 SSILDAITFALYGKTPRLGAFSLDDLIRAGEKS-ASVELEFE 79 (908)
T ss_pred HHHHHHHHHHHcCCCCCccchhhhHHHhcCCcc-EEEEEEEE
Confidence 556666666666666653 3333344444556 66666553
No 113
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.44 E-value=10 Score=38.83 Aligned_cols=49 Identities=6% Similarity=0.094 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002577 452 EQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGE 500 (906)
Q Consensus 452 e~el~~l~~~~~~~~~~~~~~l~eL~~k~~~~~~~~~~qie~l~~~~~~ 500 (906)
+..++.|.+.++-........+..-.+++.++...+..-.+.+..+...
T Consensus 138 ~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~k 186 (194)
T PF15619_consen 138 EKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQK 186 (194)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666655555566666666666666655554444444444333
No 114
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.42 E-value=23 Score=42.87 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 002577 640 KQLVQMAVQDLRESASSRTSQLQKEMST 667 (906)
Q Consensus 640 k~~l~~~~~~l~~~~~~~~e~leee~~~ 667 (906)
...+.+.+.+++.+.+.++.++++....
T Consensus 348 ~~f~~~a~~~~eeEr~~L~~qL~eqk~~ 375 (617)
T PF15070_consen 348 VEFFNSALAQAEEERARLRRQLEEQKVQ 375 (617)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3456777777887777777777776544
No 115
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.39 E-value=9.1 Score=47.27 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 374 DFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLE 438 (906)
Q Consensus 374 e~~i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L~~klerk~~~~~~n~~~~~~~~~eL~~~~~ 438 (906)
+..+.......+.+..+...+...+..+...|..|..+|+.++.....+...+..+..+|+....
T Consensus 651 E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~ 715 (769)
T PF05911_consen 651 ETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKK 715 (769)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhc
Confidence 33444444555667777777888888889999999999999999888888888887766665443
No 116
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.25 E-value=24 Score=42.49 Aligned_cols=17 Identities=24% Similarity=0.087 Sum_probs=8.7
Q ss_pred CCHHHHHHHHHhhhccc
Q 002577 93 TTADEIYKILEKGSAKR 109 (906)
Q Consensus 93 ~s~~e~~~ll~~g~~~R 109 (906)
+|.-+++.+.--|...|
T Consensus 41 Stll~aI~~~l~G~~~~ 57 (562)
T PHA02562 41 STMLEALTFALFGKPFR 57 (562)
T ss_pred HHHHHHHHHHHcCCCcC
Confidence 34455555555554444
No 117
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.08 E-value=16 Score=39.90 Aligned_cols=141 Identities=17% Similarity=0.206 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 350 EETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMF 429 (906)
Q Consensus 350 ~~~~~~l~~le~~l~~~~~~l~eke~~i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L~~klerk~~~~~~n~~~~~~~ 429 (906)
..+++.+..+++....++.....-...-..++..+..| +...-+.+..+...|..|.+.|.++......-..-+..+
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL---v~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL---VLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH---HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444332222222222333333333 344567778888889999999998888766666666776
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002577 430 QSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIA 498 (906)
Q Consensus 430 ~~eL~~~~~~l~~~i~~~~~qqe~el~~l~~~~~~~~~~~~~~l~eL~~k~~~~~~~~~~qie~l~~~~ 498 (906)
.+++.+.-..+..-.. -.+.+...+... ...-......+.+|+.++.+..+.+.+..+.+++..
T Consensus 240 lsqivdlQ~r~k~~~~-EnEeL~q~L~~s----ke~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAA-ENEELQQHLQAS----KESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHhh-hHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666665555542221 111222222221 222233445677888888888887777766666543
No 118
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.01 E-value=28 Score=42.63 Aligned_cols=95 Identities=12% Similarity=0.179 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhHHhhhHhhhhhhHHHHHHHHHHHHHHHHH
Q 002577 639 KKQLVQMAVQDLRESASSRTSQLQKEMSTMQDSTFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVLQNCLKQAKMG 718 (906)
Q Consensus 639 qk~~l~~~~~~l~~~~~~~~e~leee~~~lq~~~s~~~~e~~~~~~k~E~~~~~~~~~~ee~k~~l~~~lq~~~~~~~~~ 718 (906)
+...+...+..|+..+......+.++...+...+..+..++..|......+ .+.-..|+..|+.....+..+
T Consensus 367 Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~--------qeri~~LE~ELr~l~~~A~E~ 438 (717)
T PF09730_consen 367 EVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSRED--------QERISELEKELRALSKLAGES 438 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------HHHHHHHHHHHHHHHHHHHhH
Confidence 334456666777777777776666666555555566666666663333211 122345666777777777777
Q ss_pred HHHHHHHHHHHHHhhhhhhHhHHHHHH
Q 002577 719 AQQWRTAQESLLNLEKNNVAAVDSIVR 745 (906)
Q Consensus 719 ~~k~~~~eks~~~L~~~~~~eldd~~~ 745 (906)
..++..++....-+. .+|.-+..
T Consensus 439 q~~LnsAQDELvtfS----EeLAqLYH 461 (717)
T PF09730_consen 439 QGSLNSAQDELVTFS----EELAQLYH 461 (717)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHH
Confidence 777777776655555 45555554
No 119
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=92.71 E-value=17 Score=39.27 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 002577 392 IELRTELENAASDVSNLFA 410 (906)
Q Consensus 392 ~~L~~~l~~~~~di~~L~~ 410 (906)
..|...+..+...|.++-.
T Consensus 90 ~~L~~~i~~l~~~i~~l~~ 108 (264)
T PF06008_consen 90 QDLEQFIQNLQDNIQELIE 108 (264)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 120
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.36 E-value=24 Score=40.22 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 318 DKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLK 382 (906)
Q Consensus 318 e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l~~ 382 (906)
+++|..++..+.......+.|+..+..++.++..+...+.++...+..++..+..-+..+..+..
T Consensus 44 q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 44 QKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 34444444444444444555555555555555555555555555544444444444444444433
No 121
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=92.05 E-value=20 Score=38.67 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 002577 452 EQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMY 487 (906)
Q Consensus 452 e~el~~l~~~~~~~~~~~~~~l~eL~~k~~~~~~~~ 487 (906)
..+...+...+...+..+...+.+|+.-+.++.+.+
T Consensus 173 ~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~ 208 (264)
T PF06008_consen 173 QQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKT 208 (264)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444545555555555666666666665554443
No 122
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=92.02 E-value=29 Score=40.43 Aligned_cols=79 Identities=13% Similarity=0.184 Sum_probs=48.6
Q ss_pred CCCceeeEEeecCCCCCChHHHHHHHH--HHHHhccCccccccchhccHHHHhHHHHHHHHHHHHHHHHHHhhcCCcCCc
Q 002577 213 GGKTKTCIIATVSPSIHCLEETLSTLD--YAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGIYIPR 290 (906)
Q Consensus 213 gg~~kt~~I~~isp~~~~~~eTlsTL~--fa~rak~i~n~p~~n~~~~~~~~ik~l~~Ei~~Lk~el~~~r~kn~~~~~~ 290 (906)
.+++.++-|..-+|++.-.....+++- |-......++....+...--...+..+..++......+.+.+.++|+..+.
T Consensus 128 ~~~s~ii~is~~~~dp~~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~ 207 (444)
T TIGR03017 128 SRESSVISIEFSGVDPRFAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSD 207 (444)
T ss_pred cCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 456777777777787766666666552 332222333332222222234556778888888888888999999987665
Q ss_pred h
Q 002577 291 D 291 (906)
Q Consensus 291 e 291 (906)
+
T Consensus 208 ~ 208 (444)
T TIGR03017 208 E 208 (444)
T ss_pred c
Confidence 4
No 123
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.91 E-value=37 Score=41.38 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 002577 538 LNDLQSSLYKQEEKLT 553 (906)
Q Consensus 538 ~e~l~~~l~~~~~e~~ 553 (906)
+....+.+.++.+++.
T Consensus 864 ~k~~~nli~~ltEk~~ 879 (970)
T KOG0946|consen 864 IKFGNNLIKELTEKIS 879 (970)
T ss_pred hhhhhhHHHHHhhhhh
Confidence 3333333333333333
No 124
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.66 E-value=43 Score=41.67 Aligned_cols=43 Identities=16% Similarity=-0.004 Sum_probs=20.1
Q ss_pred HhhhhhhhccccCCCCCC---Ccccc-----CcCCCchhhhccCCccHHHH
Q 002577 823 AGKCLLNEYMVDEPSCST---PRKRS-----FNLPSMASIEELRTPAFEEL 865 (906)
Q Consensus 823 ~~~~~~~~y~~~~~t~~t---p~~~~-----~~~p~~~sie~~rt~~~~~l 865 (906)
+.+.|..-|..=.|-|.- -+|+. .+..-..+++++++.+....
T Consensus 1025 V~knFsevF~~LVp~G~a~iim~k~d~~~d~~e~d~~~~~~s~~~~~sv~~ 1075 (1200)
T KOG0964|consen 1025 VKKNFSEVFSRLVPGGTALIIMRKRDNANDHDEDDGDMDGESNEGKDSVEM 1075 (1200)
T ss_pred HHHHHHHHHHHhCCCCceeehhhccccccccccccccccccccccccchhh
Confidence 344445555545566643 12222 11222345666776665543
No 125
>PRK09039 hypothetical protein; Validated
Probab=91.53 E-value=28 Score=39.19 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 304 AEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEE 361 (906)
Q Consensus 304 ~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~le~ 361 (906)
.+.+..++..+..++.+|..|-+.+.-......+++..+..+...+..++.....++.
T Consensus 45 s~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~ 102 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQA 102 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777777777777777666666667766666666665544444444433
No 126
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=91.52 E-value=40 Score=41.00 Aligned_cols=41 Identities=12% Similarity=0.026 Sum_probs=27.6
Q ss_pred hhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002577 693 DTSAVENGKKDLEVVLQNCLKQAKMGAQQWRTAQESLLNLE 733 (906)
Q Consensus 693 ~~~~~ee~k~~l~~~lq~~~~~~~~~~~k~~~~eks~~~L~ 733 (906)
....+.+.+..|...++.....++.....+..++.-...|+
T Consensus 497 ~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt 537 (698)
T KOG0978|consen 497 KHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLT 537 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566777777777777777777777777776555554
No 127
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.33 E-value=44 Score=41.14 Aligned_cols=73 Identities=19% Similarity=0.247 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002577 338 LSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIE 413 (906)
Q Consensus 338 L~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L~~kle 413 (906)
+..++..++..+.........+...+..++..++.-+..+..+ +..+...+..+......+..++..+..++.
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l---~~~~~~~GG~~~~~r~~Le~ei~~le~e~~ 279 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESL---EKKFRSEGGDLFEEREQLERQLKEIEAARK 279 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555544444444444444444444433332222 222333344444444444555555555443
No 128
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=91.31 E-value=25 Score=38.16 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 002577 538 LNDLQSSLYKQEEKL 552 (906)
Q Consensus 538 ~e~l~~~l~~~~~e~ 552 (906)
|..+++.+.++...+
T Consensus 230 ~~~~~~elre~~k~i 244 (294)
T COG1340 230 FRNLQNELRELEKKI 244 (294)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 129
>PRK01156 chromosome segregation protein; Provisional
Probab=91.23 E-value=55 Score=42.02 Aligned_cols=9 Identities=0% Similarity=0.157 Sum_probs=4.0
Q ss_pred CCHHHHHHH
Q 002577 93 TTADEIYKI 101 (906)
Q Consensus 93 ~s~~e~~~l 101 (906)
+|.=+++.+
T Consensus 37 SsileAI~~ 45 (895)
T PRK01156 37 SSIVDAIRF 45 (895)
T ss_pred HHHHHHHHH
Confidence 344444444
No 130
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=91.15 E-value=38 Score=39.99 Aligned_cols=69 Identities=23% Similarity=0.311 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 302 AMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATI 370 (906)
Q Consensus 302 ~~~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l 370 (906)
+..+||..|+.-++.+...+..-++.+.++.-.+..|+.++-.+-.++.+++-.+.-+|.+..+.+.++
T Consensus 136 aQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~ 204 (861)
T KOG1899|consen 136 AQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKL 204 (861)
T ss_pred HhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence 445677777777766666665555555554444444544444444444444444444443333333333
No 131
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.68 E-value=15 Score=41.54 Aligned_cols=13 Identities=8% Similarity=0.299 Sum_probs=9.2
Q ss_pred CCcceEEEEEEEe
Q 002577 122 RSHSIFSITIHIK 134 (906)
Q Consensus 122 RSH~if~i~v~~~ 134 (906)
--|.+|...|...
T Consensus 147 ~Chll~V~~ve~~ 159 (493)
T KOG0804|consen 147 VCHLLYVDRVEVT 159 (493)
T ss_pred ceeEEEEEEEEEE
Confidence 4588888877654
No 132
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.67 E-value=21 Score=36.16 Aligned_cols=12 Identities=17% Similarity=0.288 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 002577 451 QEQQLKDMEEDM 462 (906)
Q Consensus 451 qe~el~~l~~~~ 462 (906)
+..++..+...+
T Consensus 177 LR~e~s~LEeql 188 (193)
T PF14662_consen 177 LRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 133
>PHA02562 46 endonuclease subunit; Provisional
Probab=90.60 E-value=46 Score=40.06 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=12.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHH
Q 002577 261 AMIKDLYSEIDRLKQEVYAAR 281 (906)
Q Consensus 261 ~~ik~l~~Ei~~Lk~el~~~r 281 (906)
..++.+..++..+..++..+.
T Consensus 174 ~~~~e~~~~i~~l~~~i~~l~ 194 (562)
T PHA02562 174 DKIRELNQQIQTLDMKIDHIQ 194 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666665543
No 134
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=90.06 E-value=23 Score=35.78 Aligned_cols=100 Identities=13% Similarity=0.128 Sum_probs=53.5
Q ss_pred HhchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---hhhhhhhHHHHHHHHHHhhhhhHHhhhHhhhhhhHHHHHHH
Q 002577 632 LASSNARKKQLVQMAVQDLRESASSRTSQLQKEMST---MQDSTFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVL 708 (906)
Q Consensus 632 l~~~~~rqk~~l~~~~~~l~~~~~~~~e~leee~~~---lq~~~s~~~~e~~~~~~k~E~~~~~~~~~~ee~k~~l~~~l 708 (906)
++..+.|...-|+-.+.=+++++...-+..+-+.+. |.-.+..+.+.+..+..+.| .+.++.+..++.-+-+..+|
T Consensus 75 iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee-~~~q~~d~~e~~ik~ltdKL 153 (205)
T KOG1003|consen 75 IAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEE-KLEQKEEKYEEELKELTDKL 153 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHH
Confidence 334446666666666666666666665555555544 44444445555555544442 44455555555455555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 002577 709 QNCLKQAKMGAQQWRTAQESLLNL 732 (906)
Q Consensus 709 q~~~~~~~~~~~k~~~~eks~~~L 732 (906)
.++...++.+-..++.+++.+.+|
T Consensus 154 kEaE~rAE~aERsVakLeke~Ddl 177 (205)
T KOG1003|consen 154 KEAETRAEFAERRVAKLEKERDDL 177 (205)
T ss_pred hhhhhhHHHHHHHHHHHcccHHHH
Confidence 666655555444444444433333
No 135
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.03 E-value=62 Score=40.64 Aligned_cols=61 Identities=8% Similarity=0.027 Sum_probs=48.1
Q ss_pred hhHHHHHHHHhHHhhhHHHhhhhhhhhhhccchhhhhh---hccccchhHHHHHHhhhhhhhcc
Q 002577 772 ADSNLLTSIDYSLQLDQDACANLNSMIVPCCGDLRELK---GGHYHKIVEITENAGKCLLNEYM 832 (906)
Q Consensus 772 ~~~~~~~e~d~s~~e~r~~~t~~~~~~~~~~e~l~~le---~~~~~~~~~i~~~~~~~~~~~y~ 832 (906)
..+++.++.|.-..+.+++.+++-.....++.--+.+. +....+|.++-+++...|.+-+.
T Consensus 857 ~ne~~vq~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~In~~Fs~~F~ 920 (1072)
T KOG0979|consen 857 VNEDAVQQYEVREDELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQINERFSQLFS 920 (1072)
T ss_pred CChHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34558888899999999999999988887776655554 46678888888888888888765
No 136
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=89.92 E-value=0.08 Score=63.40 Aligned_cols=81 Identities=46% Similarity=0.489 Sum_probs=66.2
Q ss_pred hhhcccccccccCCCCCCCCcceEEEEEEEeecCCCCCcceEEeeeccccccCCccccCCCCchhhHHHHHHhhhhHHHH
Q 002577 104 KGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTL 183 (906)
Q Consensus 104 ~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGsE~~~~~~~~~~r~~E~~~iN~SL~~L 183 (906)
.....+..+.+..|-.++++|++|.......... .... .++.|||||+|+. .+...+.++++...+|++|..+
T Consensus 486 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~~~----~~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~ 558 (568)
T COG5059 486 KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSS--TKEL----SLNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSL 558 (568)
T ss_pred hhccchhhcccchhhhhcccchhhhhcccchhhh--hHHH----Hhhhhhccccccc-hhhhhHHHHHhhHhhhhccccc
Confidence 5667788899999999999999998765432111 1111 1799999999999 9999999999999999999999
Q ss_pred HHHHHHHh
Q 002577 184 GRVINALV 191 (906)
Q Consensus 184 ~~vI~aL~ 191 (906)
|.+|.++.
T Consensus 559 ~d~~~~~~ 566 (568)
T COG5059 559 GDVIHALG 566 (568)
T ss_pred hhhhhhcc
Confidence 99998864
No 137
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=89.86 E-value=0.2 Score=62.16 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHh
Q 002577 707 VLQNCLKQAKMG-AQQWRTAQESLLNL 732 (906)
Q Consensus 707 ~lq~~~~~~~~~-~~k~~~~eks~~~L 732 (906)
.+.+....+... ..++..++....+.
T Consensus 562 ~le~l~~~~~~~~~~ki~~Le~~L~~k 588 (713)
T PF05622_consen 562 QLEELEQELNQSLSQKIEELEEALQKK 588 (713)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 455544444443 55565555554433
No 138
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=89.62 E-value=37 Score=37.56 Aligned_cols=132 Identities=14% Similarity=0.180 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002577 417 KIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDG 496 (906)
Q Consensus 417 ~~~~~n~~~~~~~~~eL~~~~~~l~~~i~~~~~qqe~el~~l~~~~~~~~~~~~~~l~eL~~k~~~~~~~~~~qie~l~~ 496 (906)
..+...+++|-+++.++. +.|...+ ...+..|..+... +......+..+...+.+..+.+...+..++.
T Consensus 125 ~aRl~ak~~WYeWR~kll---egLk~~L-------~~~~~~l~~D~~~-L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~ 193 (312)
T smart00787 125 FARLEAKKMWYEWRMKLL---EGLKEGL-------DENLEGLKEDYKL-LMKELELLNSIKPKLRDRKDALEEELRQLKQ 193 (312)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHH-------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556688888877763 3333333 3344444444333 3444445555555555555666666666777
Q ss_pred HHHHHhhhHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 497 IAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQR 560 (906)
Q Consensus 497 ~~~~l~k~~~~~le~l~~~~~s~~~~~~k~l~~~~~e~~~~~e~l~~~l~~~~~e~~~l~~q~~ 560 (906)
....++.--..++..+...+......+.. ......++...+..+...+.+....+..+..+..
T Consensus 194 ~~~e~~~~d~~eL~~lk~~l~~~~~ei~~-~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 194 LEDELEDCDPTELDRAKEKLKKLLQEIMI-KVKKLEELEEELQELESKIEDLTNKKSELNTEIA 256 (312)
T ss_pred hHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776653233444444333333322211 1112333333444444444444444444444333
No 139
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.56 E-value=25 Score=39.97 Aligned_cols=13 Identities=8% Similarity=-0.036 Sum_probs=9.1
Q ss_pred CCCCCcccccccc
Q 002577 198 PYRDSKLTRLLRD 210 (906)
Q Consensus 198 pyRdSkLT~lL~d 210 (906)
+|-.+++.|+.+.
T Consensus 210 ~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 210 WDSSCPVCRYCQS 222 (493)
T ss_pred ccCcChhhhhhcC
Confidence 5666778877765
No 140
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=89.52 E-value=59 Score=39.65 Aligned_cols=29 Identities=7% Similarity=0.027 Sum_probs=11.0
Q ss_pred HHHHHHhHHHhhHHHHHHHHhHHhhhHHH
Q 002577 762 VSTALQDADVADSNLLTSIDYSLQLDQDA 790 (906)
Q Consensus 762 fd~~~~e~~~~~~~~~~e~d~s~~e~r~~ 790 (906)
........+.+.+.+...+-......|.+
T Consensus 508 l~~~i~~l~~~~~~~~~~i~~leeq~~~l 536 (698)
T KOG0978|consen 508 LEEQILTLKASVDKLELKIGKLEEQERGL 536 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333443333333333333333333
No 141
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=89.07 E-value=58 Score=39.04 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002577 526 LFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVENARSVSKVTVNFFKTLDMHASNLTKIVEEAQT 600 (906)
Q Consensus 526 ~l~~~~~e~~~~~e~l~~~l~~~~~e~~~l~~q~~e~~~~~le~~~~~~~~~~~~~~~l~~~~~~l~~~leee~~ 600 (906)
.+...+.+++..+..|+..+..-+..+..+..++.-..-. +.--..-...+.++.+.=+.++..|+..|.+-+.
T Consensus 346 ~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~e-Lqkks~eleEmtk~k~~ke~eleeL~~~L~e~qk 419 (786)
T PF05483_consen 346 QHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTME-LQKKSSELEEMTKQKNNKEVELEELKKILAEKQK 419 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3455677777788888777766554444443322211111 1111111233445666667778888888888753
No 142
>PLN02939 transferase, transferring glycosyl groups
Probab=88.71 E-value=80 Score=40.17 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhH
Q 002577 431 SQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVST 468 (906)
Q Consensus 431 ~eL~~~~~~l~~~i~~~~~qqe~el~~l~~~~~~~~~~ 468 (906)
.-++++++.+++++....+++..+++.....+++|...
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (977)
T PLN02939 354 ELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDT 391 (977)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777777666666666433
No 143
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=88.54 E-value=68 Score=39.11 Aligned_cols=91 Identities=25% Similarity=0.267 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 321 LMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELEN 400 (906)
Q Consensus 321 l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l~~~e~~l~~~~~~L~~~l~~ 400 (906)
+..|+.+-...+.+..+..+.++-++.+-+++-+.+..+.++...+...+.+++.. +.+.......+...+.-.+++
T Consensus 429 l~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~---l~~~kq~~d~e~~rik~ev~e 505 (861)
T PF15254_consen 429 LFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQE---LLENKQQFDIETTRIKIEVEE 505 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHH
Confidence 45556555555666666666666666666666667766667777777777777765 444444555566777778888
Q ss_pred HHHhHHHHHHHHHH
Q 002577 401 AASDVSNLFAKIER 414 (906)
Q Consensus 401 ~~~di~~L~~kler 414 (906)
+...+..++-+|+.
T Consensus 506 al~~~k~~q~kLe~ 519 (861)
T PF15254_consen 506 ALVNVKSLQFKLEA 519 (861)
T ss_pred HHHHHHHHhhhHHH
Confidence 88888888888883
No 144
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=88.52 E-value=22 Score=33.46 Aligned_cols=29 Identities=41% Similarity=0.612 Sum_probs=21.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002577 466 VSTKAEATEELRGRLGKLKAMYGSGIKAL 494 (906)
Q Consensus 466 ~~~~~~~l~eL~~k~~~~~~~~~~qie~l 494 (906)
+..+...+++|+.-+.++++.|-.||+.+
T Consensus 91 lGEK~E~veEL~~Dv~DlK~myr~Qi~~l 119 (120)
T PF12325_consen 91 LGEKSEEVEELRADVQDLKEMYREQIDQL 119 (120)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556667888888888888888887753
No 145
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.40 E-value=79 Score=39.71 Aligned_cols=76 Identities=21% Similarity=0.115 Sum_probs=42.1
Q ss_pred CCceeeEEeecCCCCCChHHHHHHHHHHHHhccCccccccch--hccHHHHhHHHHHHHHHHHHHHHHHHhhcCCcCC
Q 002577 214 GKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKPEINQ--KMMKSAMIKDLYSEIDRLKQEVYAAREKNGIYIP 289 (906)
Q Consensus 214 g~~kt~~I~~isp~~~~~~eTlsTL~fa~rak~i~n~p~~n~--~~~~~~~ik~l~~Ei~~Lk~el~~~r~kn~~~~~ 289 (906)
|++..+-|.--+|++.-...-.+++-=+....++..+-.... ..--...+..+..++.....++...+.++|+..+
T Consensus 152 ~~s~ii~Is~~~~dP~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~ 229 (754)
T TIGR01005 152 EKTRIIAIEFRSEDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG 229 (754)
T ss_pred CccEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 345666666667777666666666543333332222211111 1111334566667777777777888888887654
No 146
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.33 E-value=51 Score=37.48 Aligned_cols=79 Identities=18% Similarity=0.265 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002577 336 AELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERK 415 (906)
Q Consensus 336 ~eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L~~klerk 415 (906)
.+=+.-+.++...+..++..+.++.....+.+..+..+...+....+ .+.-+... ...|+++..++.++-+.++++
T Consensus 289 ~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~---~~e~e~~e-~~~IqeleqdL~a~~eei~~~ 364 (521)
T KOG1937|consen 289 DDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELK---NLETEDEE-IRRIQELEQDLEAVDEEIESN 364 (521)
T ss_pred CChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---cccchHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 34455678888888888888888887777777665554332222211 11222222 344555555555555555544
Q ss_pred HHH
Q 002577 416 DKI 418 (906)
Q Consensus 416 ~~~ 418 (906)
..+
T Consensus 365 eel 367 (521)
T KOG1937|consen 365 EEL 367 (521)
T ss_pred HHH
Confidence 443
No 147
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=88.32 E-value=79 Score=39.64 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=31.1
Q ss_pred hhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002577 693 DTSAVENGKKDLEVVLQNCLKQAKMGAQQWRTAQESLLNLE 733 (906)
Q Consensus 693 ~~~~~ee~k~~l~~~lq~~~~~~~~~~~k~~~~eks~~~L~ 733 (906)
.+.-+.+.+.++...++.|..+.+-...+|..++.-+..|.
T Consensus 503 elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE 543 (1195)
T KOG4643|consen 503 ELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLE 543 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34555556778888888888888888888888887766665
No 148
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=88.15 E-value=50 Score=37.09 Aligned_cols=65 Identities=23% Similarity=0.322 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 336 AELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKE-KDFLIANLLKSEKALVERAIELRTELEN 400 (906)
Q Consensus 336 ~eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~e-ke~~i~~l~~~e~~l~~~~~~L~~~l~~ 400 (906)
..+-.+.++++.+-..-+..|..|....-++...+++ .+.+.+.|.++..+|...-..|+..++.
T Consensus 161 nKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDq 226 (552)
T KOG2129|consen 161 NKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQ 226 (552)
T ss_pred HHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455666777766555556666776666666666655 4566777777777777777777776643
No 149
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.09 E-value=43 Score=41.48 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 315 ESKDKQLMELQELYNSQLLLTAELSEKLEKTE 346 (906)
Q Consensus 315 ~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e 346 (906)
...+..+.-|...+++|.....++.+.+..+.
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~ 592 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLR 592 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 150
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.66 E-value=9.6 Score=39.13 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhcC
Q 002577 261 AMIKDLYSEIDRLKQEVYAAREKNG 285 (906)
Q Consensus 261 ~~ik~l~~Ei~~Lk~el~~~r~kn~ 285 (906)
..+..+...+..+..++..+...+|
T Consensus 67 ~~~~~le~~~~~l~~ELael~r~~~ 91 (194)
T PF08614_consen 67 AQISSLEQKLAKLQEELAELYRSKG 91 (194)
T ss_dssp -------------------------
T ss_pred ccccccccccccccccccccccccc
Confidence 3345555666666666655554443
No 151
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=87.61 E-value=1e+02 Score=40.11 Aligned_cols=26 Identities=4% Similarity=0.051 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002577 393 ELRTELENAASDVSNLFAKIERKDKI 418 (906)
Q Consensus 393 ~L~~~l~~~~~di~~L~~klerk~~~ 418 (906)
.+...+...+..+..|.+.+..++..
T Consensus 212 l~~~~~~~l~~~~~~Lq~~in~kR~~ 237 (1109)
T PRK10929 212 LAKKRSQQLDAYLQALRNQLNSQRQR 237 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555544443
No 152
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=87.39 E-value=4.8 Score=50.13 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhhHHH
Q 002577 644 QMAVQDLRESASSRTSQL 661 (906)
Q Consensus 644 ~~~~~~l~~~~~~~~e~l 661 (906)
...+..|+.++..+..++
T Consensus 565 ~~~l~~L~~En~~L~~~l 582 (722)
T PF05557_consen 565 KSTLEALQAENEDLLARL 582 (722)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666666666666666
No 153
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=87.12 E-value=46 Score=35.55 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q 002577 392 IELRTELENAASDVSNLFAKIE 413 (906)
Q Consensus 392 ~~L~~~l~~~~~di~~L~~kle 413 (906)
..+...+..+..++..|+..+.
T Consensus 88 ~~~~~~l~~L~~ri~~L~~~i~ 109 (247)
T PF06705_consen 88 EQLQSRLDSLNDRIEALEEEIQ 109 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555554444
No 154
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=86.87 E-value=31 Score=39.82 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=14.5
Q ss_pred cCcCCCchhhhccCCccHHH
Q 002577 845 SFNLPSMASIEELRTPAFEE 864 (906)
Q Consensus 845 ~~~~p~~~sie~~rt~~~~~ 864 (906)
.|..|-.+.|..||-+.+..
T Consensus 534 q~a~~y~~~ilq~r~~~~te 553 (596)
T KOG4360|consen 534 QLAQPYLGDILQPRPGVATE 553 (596)
T ss_pred HHhhhhccccccCCCchhhh
Confidence 45677777788888777765
No 155
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=86.76 E-value=74 Score=37.56 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHchHHhhHHHHHHHHhhHHHHHHhHHHhh
Q 002577 702 KDLEVVLQNCLKQAKMGAQQWRTAQESLLNLEKNNVAAVDSIVRGGMEANQNIHARFSSAVSTALQDADVAD 773 (906)
Q Consensus 702 ~~l~~~lq~~~~~~~~~~~k~~~~eks~~~L~~~~~~eldd~~~~~~~~n~~~lekkq~~fd~~~~e~~~~~ 773 (906)
..+..........+..+...|........... .++..-+...+..+......+-..||.+++..+..+
T Consensus 337 ~~~~~~~~~L~~f~~~~~~lwd~h~~~l~~~e----~~l~~~l~~~r~~~~~~~q~~E~~Ld~~~d~lRq~s 404 (473)
T PF14643_consen 337 KQTEAQSEDLFKFFQEAAQLWDEHRKKLSKQE----EELEKRLEQCREKHDQENQEKEAKLDIALDRLRQAS 404 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444555555555555556655554433333 444444445555555556666666666666665443
No 156
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=86.72 E-value=48 Score=35.42 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002577 377 IANLLKSEKALVERAIELRTELENAASDVSNLFAKI 412 (906)
Q Consensus 377 i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L~~kl 412 (906)
...|...+++.......|+..+..+.+.|....+++
T Consensus 69 k~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el 104 (258)
T PF15397_consen 69 KAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEEL 104 (258)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555554444443
No 157
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=86.34 E-value=46 Score=34.82 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 002577 393 ELRTELENAASDVSNLFAKIERKDK 417 (906)
Q Consensus 393 ~L~~~l~~~~~di~~L~~klerk~~ 417 (906)
.+...|..+...+.=|..+|..+..
T Consensus 137 DfeqrLnqAIErnAfLESELdEke~ 161 (333)
T KOG1853|consen 137 DFEQRLNQAIERNAFLESELDEKEV 161 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3334444444444445555544444
No 158
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=86.30 E-value=94 Score=39.03 Aligned_cols=19 Identities=32% Similarity=0.139 Sum_probs=13.6
Q ss_pred HHhhhhHHHHHHHHHHHhc
Q 002577 174 GEINKSLLTLGRVINALVE 192 (906)
Q Consensus 174 ~~iN~SL~~L~~vI~aL~~ 192 (906)
..|=+|=..+.+||..|.-
T Consensus 78 ieiL~Sr~v~~~VV~~L~L 96 (754)
T TIGR01005 78 VEILSSNEILKQVVDKLGL 96 (754)
T ss_pred HHHHccHHHHHHHHHHcCC
Confidence 3455677888889988753
No 159
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=85.69 E-value=54 Score=35.04 Aligned_cols=21 Identities=19% Similarity=0.564 Sum_probs=14.8
Q ss_pred cccCCCCCCCccccCcCCCch
Q 002577 832 MVDEPSCSTPRKRSFNLPSMA 852 (906)
Q Consensus 832 ~~~~~t~~tp~~~~~~~p~~~ 852 (906)
.-..|.|+.---...|||+..
T Consensus 235 ll~rpKCTPDmdV~LnIP~ee 255 (258)
T PF15397_consen 235 LLRRPKCTPDMDVILNIPTEE 255 (258)
T ss_pred hcCCCCCCCCchhhcCCcccc
Confidence 346799966666666999854
No 160
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.17 E-value=57 Score=34.84 Aligned_cols=9 Identities=33% Similarity=0.283 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 002577 320 QLMELQELY 328 (906)
Q Consensus 320 ~l~~L~~~~ 328 (906)
.+..|....
T Consensus 34 ~a~~Leek~ 42 (246)
T PF00769_consen 34 TAEELEEKL 42 (246)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 161
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=85.15 E-value=64 Score=35.36 Aligned_cols=52 Identities=10% Similarity=0.118 Sum_probs=34.4
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 505 SRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQ 557 (906)
Q Consensus 505 ~~~~le~l~~~~~s~~~~~~k~l~~~~~e~~~~~e~l~~~l~~~~~e~~~l~~ 557 (906)
.-.+-+++...+...- .....|..-+.|++....++...+.+.+.++..++.
T Consensus 253 ~~~EnEeL~q~L~~sk-e~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 253 LAAENEELQQHLQASK-ESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3345666665555442 234446777888888888888888888887776653
No 162
>PRK10698 phage shock protein PspA; Provisional
Probab=85.08 E-value=54 Score=34.46 Aligned_cols=101 Identities=11% Similarity=0.182 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHh---hhhhhhhHHHHHHHHHHhhhhhHHhhhHhhhhh----hHHHHHHHHHHHH
Q 002577 641 QLVQMAVQDLRESASSRTSQLQKEMST---MQDSTFSVKAEWSAHMNKTESHYLEDTSAVENG----KKDLEVVLQNCLK 713 (906)
Q Consensus 641 ~~l~~~~~~l~~~~~~~~e~leee~~~---lq~~~s~~~~e~~~~~~k~E~~~~~~~~~~ee~----k~~l~~~lq~~~~ 713 (906)
.+|.-.++.+++++...+..+-.-+.. +++++..+...+..|-.+++.-.-.+-+.|... |......+.....
T Consensus 27 k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~ 106 (222)
T PRK10698 27 KLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEH 106 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777888888888888887777755 889999999999999988863332233333321 4455566666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHH
Q 002577 714 QAKMGAQQWRTAQESLLNLEKNNVAAVDSIVR 745 (906)
Q Consensus 714 ~~~~~~~k~~~~eks~~~L~~~~~~eldd~~~ 745 (906)
..+.....+..+.....+|. ..+.++-.
T Consensus 107 ~~~~~~~~~~~L~~~l~~L~----~ki~eak~ 134 (222)
T PRK10698 107 EVTLVDETLARMKKEIGELE----NKLSETRA 134 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 67777777777777666666 44554444
No 163
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=84.94 E-value=1.2e+02 Score=38.51 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=20.2
Q ss_pred HHHHHHHHhhhcccccccccCCC-----CCCCCcceEEEEEE
Q 002577 96 DEIYKILEKGSAKRRTAETLLNK-----QSSRSHSIFSITIH 132 (906)
Q Consensus 96 ~e~~~ll~~g~~~R~~~~t~~n~-----~SSRSH~if~i~v~ 132 (906)
..++..|.-|...|..+....+. ...-+.+-++|++.
T Consensus 76 SAIltAl~lglG~rAs~tnRgsslK~lIK~G~~~A~IsItL~ 117 (1074)
T KOG0250|consen 76 SAILTALTLGLGGRASATNRGSSLKDLIKDGCSSAKISITLS 117 (1074)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHhCCCcceEEEEEEe
Confidence 44666777777776554332221 11245667777764
No 164
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=84.92 E-value=65 Score=35.26 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 373 KDFLIANLLKSEKALVERAIELRTEL 398 (906)
Q Consensus 373 ke~~i~~l~~~e~~l~~~~~~L~~~l 398 (906)
++++.+.|.+....+...-..|...+
T Consensus 104 EE~ltn~L~rkl~qLr~EK~~lE~~L 129 (310)
T PF09755_consen 104 EEFLTNDLSRKLNQLRQEKVELENQL 129 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333333
No 165
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.74 E-value=35 Score=32.08 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=14.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 002577 259 KSAMIKDLYSEIDRLKQEVYAAR 281 (906)
Q Consensus 259 ~~~~ik~l~~Ei~~Lk~el~~~r 281 (906)
...++..|...|.++..++..++
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~ 36 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQ 36 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666655
No 166
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=84.53 E-value=49 Score=33.54 Aligned_cols=65 Identities=22% Similarity=0.221 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002577 344 KTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNL 408 (906)
Q Consensus 344 ~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L 408 (906)
.+++++.+++..+..+++....+-...+.-+.+...+......|......+....+....++..|
T Consensus 64 ~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 64 ALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 34555666666666666666666555555555544444444444444444444444333333333
No 167
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=84.47 E-value=95 Score=36.82 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 304 AEKIERMELESESKDKQLMELQELYNSQLLLTAELS 339 (906)
Q Consensus 304 ~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~ 339 (906)
++++..|+...+.+.=|+.-|.+....+.+...+|+
T Consensus 110 QerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE 145 (861)
T KOG1899|consen 110 QERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLE 145 (861)
T ss_pred HHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHH
Confidence 456666777777776677777766665554444443
No 168
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=84.17 E-value=76 Score=35.43 Aligned_cols=95 Identities=18% Similarity=0.281 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002577 417 KIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDG 496 (906)
Q Consensus 417 ~~~~~n~~~~~~~~~eL~~~~~~l~~~i~~~~~qqe~el~~l~~~~~~~~~~~~~~l~eL~~k~~~~~~~~~~qie~l~~ 496 (906)
-.+...+..|-.++.++.+. +...+ +..+..|..+... +......+.++..++....+.+...+..++.
T Consensus 130 ~aRl~aK~~WYeWR~~ll~g---l~~~L-------~~~~~~L~~D~~~-L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~ 198 (325)
T PF08317_consen 130 YARLEAKKMWYEWRMQLLEG---LKEGL-------EENLELLQEDYAK-LDKQLEQLDELLPKLRERKAELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHH-------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678898887665433 32222 3344444444333 3444455666666676667777777777787
Q ss_pred HHHHHhhhHHhhHhHHHHHHHHHHHH
Q 002577 497 IAGELDGNSRSTFGDLNSEVSKHSHA 522 (906)
Q Consensus 497 ~~~~l~k~~~~~le~l~~~~~s~~~~ 522 (906)
+...+..--..+++.+...+..+-..
T Consensus 199 ~~~e~~~~D~~eL~~lr~eL~~~~~~ 224 (325)
T PF08317_consen 199 LVEEIESCDQEELEALRQELAEQKEE 224 (325)
T ss_pred HHhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 77776654455666666555544444
No 169
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=84.13 E-value=74 Score=35.25 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 530 IASEADSLLNDLQSSLYKQEEKLTAYAQQ 558 (906)
Q Consensus 530 ~~~e~~~~~e~l~~~l~~~~~e~~~l~~q 558 (906)
.+.-....|++++..++.-..-...|..+
T Consensus 217 QL~~Y~~Kf~efq~tL~kSNe~F~tfk~E 245 (309)
T PF09728_consen 217 QLNLYSEKFEEFQDTLNKSNEVFETFKKE 245 (309)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33333344555555555555555555543
No 170
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=83.69 E-value=89 Score=35.86 Aligned_cols=20 Identities=35% Similarity=0.338 Sum_probs=12.0
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 002577 262 MIKDLYSEIDRLKQEVYAAR 281 (906)
Q Consensus 262 ~ik~l~~Ei~~Lk~el~~~r 281 (906)
-+..+..++..++.++..++
T Consensus 82 ~l~~l~~~~~~l~a~~~~l~ 101 (423)
T TIGR01843 82 DAAELESQVLRLEAEVARLR 101 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665544
No 171
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=83.60 E-value=59 Score=33.71 Aligned_cols=32 Identities=16% Similarity=0.343 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002577 387 LVERAIELRTELENAASDVSNLFAKIERKDKI 418 (906)
Q Consensus 387 l~~~~~~L~~~l~~~~~di~~L~~klerk~~~ 418 (906)
+......+...|..+....+.||.++++-+..
T Consensus 74 ~~~erdq~~~dL~s~E~sfsdl~~ryek~K~v 105 (207)
T PF05010_consen 74 LLKERDQAYADLNSLEKSFSDLHKRYEKQKEV 105 (207)
T ss_pred HHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444556666666666777777777755554
No 172
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.01 E-value=1e+02 Score=36.04 Aligned_cols=77 Identities=18% Similarity=0.350 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002577 339 SEKLEKTEKKLEETEHALSDLEEKHRQA-NATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERK 415 (906)
Q Consensus 339 ~~~l~~~e~~l~~~~~~l~~le~~l~~~-~~~l~eke~~i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L~~klerk 415 (906)
+....-+..++..+++.+.+....++.. ..-+..++.+++.--.++..+...+..|+..|+.....+....++.+|-
T Consensus 56 eaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl 133 (772)
T KOG0999|consen 56 EAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERL 133 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555555555555444433 3334555666666556566666666666666665555555555554433
No 173
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=82.71 E-value=96 Score=35.51 Aligned_cols=95 Identities=14% Similarity=0.119 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHhHhHHHHH---HHHHHHHHH
Q 002577 408 LFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKD---MEEDMQSFVSTKAEA---TEELRGRLG 481 (906)
Q Consensus 408 L~~klerk~~~~~~n~~~~~~~~~eL~~~~~~l~~~i~~~~~qqe~el~~---l~~~~~~~~~~~~~~---l~eL~~k~~ 481 (906)
...+|++++.-=...+..|-.+..+|..-++.-.........++..+-.+ |...++..+..|.+- ..+|.++|.
T Consensus 275 ~~~~le~er~~wtE~ES~WIsLteeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~ 354 (488)
T PF06548_consen 275 AEEELEQERQRWTEAESKWISLTEELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHN 354 (488)
T ss_pred hhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777666677777887777777666666655555555555444332 344555555556554 458888888
Q ss_pred HHHHH---HHhhHHHHHHHHHHHh
Q 002577 482 KLKAM---YGSGIKALDGIAGELD 502 (906)
Q Consensus 482 ~~~~~---~~~qie~l~~~~~~l~ 502 (906)
++... +.+||+.+++++++--
T Consensus 355 ~Ll~~Hr~i~egI~dVKkaAakAg 378 (488)
T PF06548_consen 355 DLLARHRRIMEGIEDVKKAAAKAG 378 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 87764 4688888888877643
No 174
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=82.70 E-value=1.3e+02 Score=36.92 Aligned_cols=47 Identities=21% Similarity=0.233 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 392 IELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLE 438 (906)
Q Consensus 392 ~~L~~~l~~~~~di~~L~~klerk~~~~~~n~~~~~~~~~eL~~~~~ 438 (906)
..++-.|+........|--.|..+++.-.+.+.+.+.++.-+..++.
T Consensus 511 k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 511 KSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555555554444444444444444433333333
No 175
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=82.64 E-value=24 Score=36.15 Aligned_cols=40 Identities=35% Similarity=0.460 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 341 KLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANL 380 (906)
Q Consensus 341 ~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l 380 (906)
.+......+..+...+..++..+..+...++++...+..+
T Consensus 110 ~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l 149 (194)
T PF08614_consen 110 ELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEIL 149 (194)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444443333
No 176
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=82.53 E-value=0.4 Score=59.45 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 002577 267 YSEIDRLKQEVYAAREKN 284 (906)
Q Consensus 267 ~~Ei~~Lk~el~~~r~kn 284 (906)
..++..+..++..++.++
T Consensus 266 ~~~~e~le~ei~~L~q~~ 283 (713)
T PF05622_consen 266 KIELEELEKEIDELRQEN 283 (713)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444444
No 177
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=82.40 E-value=1.2e+02 Score=36.29 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHHHHHHHHHHhh
Q 002577 641 QLVQMAVQDLRESASSRTSQLQKEMSTMQDSTFSVKAEWSAHMNKT 686 (906)
Q Consensus 641 ~~l~~~~~~l~~~~~~~~e~leee~~~lq~~~s~~~~e~~~~~~k~ 686 (906)
..|..-+..++......++..-.++.++++++......+.+.+.+.
T Consensus 295 ~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL 340 (629)
T KOG0963|consen 295 AQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKL 340 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444445556666666666555555
No 178
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=82.34 E-value=79 Score=34.28 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 002577 530 IASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVENARSVSKVTVN 579 (906)
Q Consensus 530 ~~~e~~~~~e~l~~~l~~~~~e~~~l~~q~~e~~~~~le~~~~~~~~~~~ 579 (906)
.+..+...-+.++..++-++.+...|++|+.++..+ .+.-..+...+..
T Consensus 208 kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K-~~~kek~ViniQ~ 256 (305)
T PF14915_consen 208 KVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNK-ADNKEKTVINIQD 256 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHH
Confidence 455555667788899999999999999999999998 4444444433333
No 179
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=82.14 E-value=84 Score=34.43 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002577 363 HRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDK 417 (906)
Q Consensus 363 l~~~~~~l~eke~~i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L~~klerk~~ 417 (906)
+++..+.+++...+..++....++|.++....+..+..+..+...|+.-+.+-+.
T Consensus 87 lr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~E 141 (401)
T PF06785_consen 87 LRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLRE 141 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3444445555555555555555666666666666666666666666555543333
No 180
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=81.97 E-value=1.8e+02 Score=38.11 Aligned_cols=110 Identities=7% Similarity=-0.022 Sum_probs=64.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHchHHhhHHHHHHHHhhHHHHHHhHHHhhHH
Q 002577 696 AVENGKKDLEVVLQNCLKQAKMGAQQWRTAQESLLNLEKNNVAAVDSIVRGGMEANQNIHARFSSAVSTALQDADVADSN 775 (906)
Q Consensus 696 ~~ee~k~~l~~~lq~~~~~~~~~~~k~~~~eks~~~L~~~~~~eldd~~~~~~~~n~~~lekkq~~fd~~~~e~~~~~~~ 775 (906)
.++..=..+...++...+.+.+......+++...+++. ..+.|-..+-...-...+......|+.+....+.--
T Consensus 571 ~le~~~~~~~~~~~~~~ek~~~l~~~~~~~e~~~~~~~----~~~e~~~~e~~k~~~~~lk~~sgt~~~~~~~le~l~-- 644 (1294)
T KOG0962|consen 571 SLEKELHKLSKEIQEMEERLRMLQLEEQSLEINRNGIR----KDLEDRKEEELKSKEFFLKDESGTIDEYLDLLERLK-- 644 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHH--
Confidence 55555677888889999999999999999988888776 666663333333444445555566665555444322
Q ss_pred HHHHHHhHHhhhHHHhhhhhhhhhhccchhhhhhhccccchh
Q 002577 776 LLTSIDYSLQLDQDACANLNSMIVPCCGDLRELKGGHYHKIV 817 (906)
Q Consensus 776 ~~~e~d~s~~e~r~~~t~~~~~~~~~~e~l~~le~~~~~~~~ 817 (906)
.+++.+.+..+.+ -....-|+..++.....|+.|+.
T Consensus 645 --~eie~~rk~l~~l----q~~s~~Y~k~Ie~~~~~~~CplC 680 (1294)
T KOG0962|consen 645 --GEIEKARKDLAML----QGRSALYRKFIEIACRSHCCPLC 680 (1294)
T ss_pred --HHHHHHHhhhhhh----hhHHHHHHHHHHHHhhccCCCcc
Confidence 2233333222222 22233455555555556666553
No 181
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=81.88 E-value=35 Score=37.55 Aligned_cols=61 Identities=21% Similarity=0.247 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 316 SKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFL 376 (906)
Q Consensus 316 ~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~ 376 (906)
.+...+.++++.|..-...++.|..++..+-=.+..+++.|.++++.+.+++..+.++-..
T Consensus 81 ~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~e 141 (302)
T PF09738_consen 81 DLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRE 141 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888888888888888888888888888888888888776655433
No 182
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=81.66 E-value=43 Score=33.04 Aligned_cols=39 Identities=13% Similarity=0.232 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 002577 452 EQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSG 490 (906)
Q Consensus 452 e~el~~l~~~~~~~~~~~~~~l~eL~~k~~~~~~~~~~q 490 (906)
..-...|...+.......+..+.+++.++....+.+...
T Consensus 44 ~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~ 82 (155)
T PF07464_consen 44 QNVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLRKA 82 (155)
T ss_dssp HHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG-
T ss_pred HHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 333334444444434445555666666666666655543
No 183
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.95 E-value=85 Score=33.71 Aligned_cols=31 Identities=13% Similarity=0.324 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 345 TEKKLEETEHALSDLEEKHRQANATIKEKDF 375 (906)
Q Consensus 345 ~e~~l~~~~~~l~~le~~l~~~~~~l~eke~ 375 (906)
+++++..++..+..++.++..++..+.++..
T Consensus 71 ~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~ 101 (265)
T COG3883 71 LQKEIDQSKAEIKKLQKEIAELKENIVERQE 101 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444433
No 184
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=80.88 E-value=1.5e+02 Score=36.54 Aligned_cols=14 Identities=21% Similarity=0.218 Sum_probs=6.1
Q ss_pred cchhhhhhhccccc
Q 002577 802 CGDLRELKGGHYHK 815 (906)
Q Consensus 802 ~e~l~~le~~~~~~ 815 (906)
++.+..|++.|+..
T Consensus 581 D~p~~~lD~~~r~~ 594 (650)
T TIGR03185 581 DTPLGRLDSSHREN 594 (650)
T ss_pred cCCccccChHHHHH
Confidence 44444444444333
No 185
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=80.55 E-value=1.4e+02 Score=36.05 Aligned_cols=9 Identities=11% Similarity=0.128 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 002577 95 ADEIYKILE 103 (906)
Q Consensus 95 ~~e~~~ll~ 103 (906)
.=+++.++.
T Consensus 38 ll~al~~~~ 46 (563)
T TIGR00634 38 IIDALSLLG 46 (563)
T ss_pred HHHHHHHHh
Confidence 344555554
No 186
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=80.32 E-value=59 Score=31.49 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 293 YLQEEAEKKAMAEKIERMELESESKDKQLMELQE 326 (906)
Q Consensus 293 ~~~~e~e~~~~~eki~~le~~l~~~e~~l~~L~~ 326 (906)
+...+.+++........++..+.+++..+...+.
T Consensus 5 ~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~ 38 (140)
T PF10473_consen 5 FLHVEEKLKESESEKDSLEDHVESLERELEMSQE 38 (140)
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444333
No 187
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=79.99 E-value=1.3e+02 Score=35.23 Aligned_cols=186 Identities=8% Similarity=0.039 Sum_probs=96.1
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhHH-hhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 648 QDLRESASSRTSQLQKEMSTMQDSTFSVKAEWSAHMNKTESHYL-EDTSAVENGKKDLEVVLQNCLKQAKMGAQQWRTAQ 726 (906)
Q Consensus 648 ~~l~~~~~~~~e~leee~~~lq~~~s~~~~e~~~~~~k~E~~~~-~~~~~~ee~k~~l~~~lq~~~~~~~~~~~k~~~~e 726 (906)
..+...+..+.+.|.+-+++|+.. .+.+.++.. .+.+.+ +....+++....+...+.++..++.+.+.+...-+
T Consensus 304 ~~e~sk~eeL~~~L~~~lea~q~a-gkla~Qe~~----~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qE 378 (531)
T PF15450_consen 304 KLEESKAEELATKLQENLEAMQLA-GKLAQQETQ----SELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQE 378 (531)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHh-hhhhHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 444555666677777777776555 222222211 122222 22344555556666666666665555554444333
Q ss_pred HHHHHhhhhhhHhHHHHHHchHHhhHHHHHHHHhhHHHHHHhHHHhhHHHHHHHHhHHhhhHHHhhhhhhhhhhccchhh
Q 002577 727 ESLLNLEKNNVAAVDSIVRGGMEANQNIHARFSSAVSTALQDADVADSNLLTSIDYSLQLDQDACANLNSMIVPCCGDLR 806 (906)
Q Consensus 727 ks~~~L~~~~~~eldd~~~~~~~~n~~~lekkq~~fd~~~~e~~~~~~~~~~e~d~s~~e~r~~~t~~~~~~~~~~e~l~ 806 (906)
++ ++.=+.+..+.-....-+-...|+..-.+....-.++..-+|....+..+.+.....+++...--++
T Consensus 379 qt-----------L~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kId 447 (531)
T PF15450_consen 379 QT-----------LNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKID 447 (531)
T ss_pred HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 33 3333334444444444445555555555666666666666666666666666666666666665555
Q ss_pred hhhhccccchhHHHHHHhhhhhhhccccCCCCCCCccccCcCCCch
Q 002577 807 ELKGGHYHKIVEITENAGKCLLNEYMVDEPSCSTPRKRSFNLPSMA 852 (906)
Q Consensus 807 ~le~~~~~~~~~i~~~~~~~~~~~y~~~~~t~~tp~~~~~~~p~~~ 852 (906)
.=...-...|..++.-+...+.+--. --|.+|.+.--.+...+
T Consensus 448 tE~k~R~~eV~~vRqELa~lLssvQ~---~~e~~~~rkiaeiqg~l 490 (531)
T PF15450_consen 448 TEGKAREREVGAVRQELATLLSSVQL---LKEDNPGRKIAEIQGKL 490 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCChhhhHHHHHHHH
Confidence 54444444444444444443322211 34566766544555554
No 188
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=79.61 E-value=1.6e+02 Score=35.98 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002577 471 EATEELRGRLGKLKAMYGSGIKALDGI 497 (906)
Q Consensus 471 ~~l~eL~~k~~~~~~~~~~qie~l~~~ 497 (906)
..+.+|..++..+-+.|..-.+-..++
T Consensus 247 ~kl~~l~~~~~~LWn~l~ts~Ee~~~f 273 (660)
T KOG4302|consen 247 QKLQDLRTKLLELWNLLDTSDEERQRF 273 (660)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 445556666655555555444444443
No 189
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=79.53 E-value=39 Score=37.53 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 002577 392 IELRTELENAASDVSNLFAKIER 414 (906)
Q Consensus 392 ~~L~~~l~~~~~di~~L~~kler 414 (906)
.........+...+.-....|++
T Consensus 109 ~~~~~e~~sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 109 IEFQEERDSLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 190
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=79.31 E-value=1.2e+02 Score=34.41 Aligned_cols=94 Identities=26% Similarity=0.307 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 304 AEKIERMELESES---KDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANL 380 (906)
Q Consensus 304 ~eki~~le~~l~~---~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l 380 (906)
.+.+..|.+.++. .++.+.+|++.+++.+.......-++..++.++.+.. .|.++.+-...-... ++-+.++.+|
T Consensus 241 kehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~-rl~elreg~e~e~~r-kelE~lR~~L 318 (575)
T KOG4403|consen 241 KEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAP-RLSELREGVENETSR-KELEQLRVAL 318 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhh-hhhhhhcchhHHHHH-HHHHHHHHHH
Confidence 3444555544443 3567888888877766554444444445555544322 122222211111111 4667778888
Q ss_pred HHHHHHHHHH-----HHHHHHHHH
Q 002577 381 LKSEKALVER-----AIELRTELE 399 (906)
Q Consensus 381 ~~~e~~l~~~-----~~~L~~~l~ 399 (906)
.+.|.++... -..||+.|+
T Consensus 319 ~kAEkele~nS~wsaP~aLQ~wLq 342 (575)
T KOG4403|consen 319 EKAEKELEANSSWSAPLALQKWLQ 342 (575)
T ss_pred HHHHHHHHhccCCCCcHHHHHHHH
Confidence 8888887665 234666554
No 191
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=78.97 E-value=1.4e+02 Score=34.99 Aligned_cols=33 Identities=21% Similarity=0.179 Sum_probs=18.4
Q ss_pred ccccchhccHHHHhHHHHHHHHHHHHHHHHHHhhc
Q 002577 250 KPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKN 284 (906)
Q Consensus 250 ~p~~n~~~~~~~~ik~l~~Ei~~Lk~el~~~r~kn 284 (906)
.|..|++.+ ..++.+..=...|..++..+|...
T Consensus 4 ~~~~~Qd~~--k~~~Ql~~~~~~lqaev~~lr~~~ 36 (531)
T PF15450_consen 4 RLVPEQDTL--KRWKQLEQWVAELQAEVACLRGHK 36 (531)
T ss_pred CcCcccchH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566543 344555555666666666666443
No 192
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=78.67 E-value=1.3e+02 Score=34.55 Aligned_cols=12 Identities=33% Similarity=0.611 Sum_probs=6.7
Q ss_pred EEEEEEEEEcCc
Q 002577 39 MKVTFLELYNEE 50 (906)
Q Consensus 39 v~~S~~Eiyne~ 50 (906)
+++-..|.+|++
T Consensus 95 CKFH~~Eafnde 106 (527)
T PF15066_consen 95 CKFHWTEAFNDE 106 (527)
T ss_pred hhhhhhhhcccc
Confidence 344456666666
No 193
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=78.27 E-value=96 Score=32.76 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002577 373 KDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIER 414 (906)
Q Consensus 373 ke~~i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L~~kler 414 (906)
++..|.++.+..+.|...-...-+.|+.+..||..|..-|..
T Consensus 30 ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkq 71 (230)
T PF10146_consen 30 EEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQ 71 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444434444444444445555556666666655553
No 194
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=78.23 E-value=1e+02 Score=33.05 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 348 KLEETEHALSDLEEKHRQANATIKEKDFLIANLLK 382 (906)
Q Consensus 348 ~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l~~ 382 (906)
.|++..+.+..|++.+.-++..|.++++-|+.+..
T Consensus 118 ALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFv 152 (305)
T PF15290_consen 118 ALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFV 152 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHh
Confidence 34555566666666666667777777666555443
No 195
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=78.01 E-value=91 Score=32.35 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 002577 393 ELRTELENAASDVSNLFA 410 (906)
Q Consensus 393 ~L~~~l~~~~~di~~L~~ 410 (906)
.+..-+.+...-|..+-+
T Consensus 41 ~m~~i~~e~Ek~i~~~i~ 58 (207)
T PF05010_consen 41 EMRKIMEEYEKTIAQMIE 58 (207)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 196
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=77.43 E-value=1.1e+02 Score=32.80 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002577 387 LVERAIELRTELENAASDVSNLFAKIERKDK 417 (906)
Q Consensus 387 l~~~~~~L~~~l~~~~~di~~L~~klerk~~ 417 (906)
+.+++......|+.+..++..+...|++-..
T Consensus 100 lEgQl~s~Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 100 LEGQLNSCKKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666666664444
No 197
>PRK11281 hypothetical protein; Provisional
Probab=77.42 E-value=2.4e+02 Score=36.93 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002577 392 IELRTELENAASDVSNLFAKIERKDKI 418 (906)
Q Consensus 392 ~~L~~~l~~~~~di~~L~~klerk~~~ 418 (906)
..+...+...+..+..|++.+..++..
T Consensus 230 d~~~~~~~~~~~~~~~lq~~in~kr~~ 256 (1113)
T PRK11281 230 DYLTARIQRLEHQLQLLQEAINSKRLT 256 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555554443
No 198
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=75.86 E-value=54 Score=36.39 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 002577 391 AIELRTELENAASDVSNLFAKIE 413 (906)
Q Consensus 391 ~~~L~~~l~~~~~di~~L~~kle 413 (906)
+..+...-.++..++..|..+.+
T Consensus 66 L~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 66 LEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444333
No 199
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=75.42 E-value=1.6e+02 Score=33.88 Aligned_cols=26 Identities=19% Similarity=0.083 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 531 ASEADSLLNDLQSSLYKQEEKLTAYA 556 (906)
Q Consensus 531 ~~e~~~~~e~l~~~l~~~~~e~~~l~ 556 (906)
-.+|-++-++++++-.+--+|...|.
T Consensus 491 EqefLslqeEfQk~ekenl~ERqkLK 516 (527)
T PF15066_consen 491 EQEFLSLQEEFQKHEKENLEERQKLK 516 (527)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33444455555555444444444333
No 200
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=75.41 E-value=1.4e+02 Score=33.27 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 002577 264 KDLYSEIDRLK 274 (906)
Q Consensus 264 k~l~~Ei~~Lk 274 (906)
+.|..-|..-+
T Consensus 78 ~EL~~~I~egr 88 (325)
T PF08317_consen 78 RELKKYISEGR 88 (325)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 201
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=74.58 E-value=2.6e+02 Score=35.97 Aligned_cols=7 Identities=43% Similarity=0.686 Sum_probs=3.6
Q ss_pred ccCCCCC
Q 002577 833 VDEPSCS 839 (906)
Q Consensus 833 ~~~~t~~ 839 (906)
-|+|||.
T Consensus 847 LDEpf~~ 853 (908)
T COG0419 847 LDEPFGT 853 (908)
T ss_pred eeCCCCC
Confidence 3556554
No 202
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=74.00 E-value=40 Score=34.63 Aligned_cols=55 Identities=24% Similarity=0.280 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 342 LEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRT 396 (906)
Q Consensus 342 l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l~~~e~~l~~~~~~L~~ 396 (906)
++.+...-..+-+.+.+++..+...+..|++-+.+.+.+...-+.+.+....|.+
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~ 198 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKK 198 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 3333333333333344444444444444444444434333333333333333333
No 203
>PRK10884 SH3 domain-containing protein; Provisional
Probab=73.91 E-value=65 Score=33.39 Aligned_cols=22 Identities=9% Similarity=0.265 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002577 304 AEKIERMELESESKDKQLMELQ 325 (906)
Q Consensus 304 ~eki~~le~~l~~~e~~l~~L~ 325 (906)
..++..++.++..+..++..+.
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445444444444444433
No 204
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=73.90 E-value=1.2e+02 Score=31.85 Aligned_cols=109 Identities=15% Similarity=0.220 Sum_probs=68.8
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---hhhhhhhHHHHHHHHHHhhhhhHHhhhHhhh--
Q 002577 624 LLEKVAELLASSNARKKQLVQMAVQDLRESASSRTSQLQKEMST---MQDSTFSVKAEWSAHMNKTESHYLEDTSAVE-- 698 (906)
Q Consensus 624 l~~~i~~ll~~~~~rqk~~l~~~~~~l~~~~~~~~e~leee~~~---lq~~~s~~~~e~~~~~~k~E~~~~~~~~~~e-- 698 (906)
+.+.|+.++..-+..+ .+|.-.++.++.++...+..+..-+.. +++.+.........|..+++.-...+-+.|.
T Consensus 11 ~~a~~~~~~dk~EDp~-~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~ 89 (225)
T COG1842 11 VKANINELLDKAEDPE-KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLARE 89 (225)
T ss_pred HHHHHHHHHHhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3445566666666666 689999999999999999888888866 8899999999999998888632222223331
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002577 699 --NGKKDLEVVLQNCLKQAKMGAQQWRTAQESLLNLE 733 (906)
Q Consensus 699 --e~k~~l~~~lq~~~~~~~~~~~k~~~~eks~~~L~ 733 (906)
+.+..++..+......+.....+...+.+....|.
T Consensus 90 al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le 126 (225)
T COG1842 90 ALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALE 126 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333444444444444444444444444444444
No 205
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=73.62 E-value=2.1e+02 Score=34.51 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=8.4
Q ss_pred HHHHHHHhhHHHHHHHHHH
Q 002577 482 KLKAMYGSGIKALDGIAGE 500 (906)
Q Consensus 482 ~~~~~~~~qie~l~~~~~~ 500 (906)
.++..|+..++.+.....+
T Consensus 315 ~LkrKyg~s~e~l~~~~~~ 333 (563)
T TIGR00634 315 RLKRKYGASVEEVLEYAEK 333 (563)
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 3333444445444444444
No 206
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=73.29 E-value=1.5e+02 Score=32.42 Aligned_cols=29 Identities=21% Similarity=0.522 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 002577 437 LEILHKTVATSVTQQEQQLKDMEEDMQSF 465 (906)
Q Consensus 437 ~~~l~~~i~~~~~qqe~el~~l~~~~~~~ 465 (906)
...+...+......|+.-+..+......|
T Consensus 202 ~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~ 230 (296)
T PF13949_consen 202 FDPLQNRIQQNLSKQEELLQEIQEANEEF 230 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444443
No 207
>PRK10884 SH3 domain-containing protein; Provisional
Probab=73.21 E-value=69 Score=33.23 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=16.2
Q ss_pred cHHHHhHHHHHHHHHHHHHHHHHH
Q 002577 258 MKSAMIKDLYSEIDRLKQEVYAAR 281 (906)
Q Consensus 258 ~~~~~ik~l~~Ei~~Lk~el~~~r 281 (906)
.....+..++.++..++.++...+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777778888777776654
No 208
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=72.25 E-value=1.5e+02 Score=32.17 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002577 264 KDLYSEIDRLKQEVYAA 280 (906)
Q Consensus 264 k~l~~Ei~~Lk~el~~~ 280 (906)
-.+..++..++.+...+
T Consensus 23 ~~~~~~l~~~~~~~~~l 39 (302)
T PF10186_consen 23 LELRSELQQLKEENEEL 39 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 209
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=72.15 E-value=87 Score=29.37 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002577 373 KDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIE 413 (906)
Q Consensus 373 ke~~i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L~~kle 413 (906)
++....++..+.+.+.-++..|.+.-+.....+.+|.++|.
T Consensus 68 k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 68 KEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555555443
No 210
>PLN02939 transferase, transferring glycosyl groups
Probab=71.70 E-value=3e+02 Score=35.33 Aligned_cols=8 Identities=38% Similarity=0.434 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 002577 588 ASNLTKIV 595 (906)
Q Consensus 588 ~~~l~~~l 595 (906)
.+.|+..+
T Consensus 437 a~~lr~~~ 444 (977)
T PLN02939 437 AKLLREMV 444 (977)
T ss_pred HHHHHHHH
Confidence 34444443
No 211
>PRK10869 recombination and repair protein; Provisional
Probab=71.21 E-value=2.4e+02 Score=34.04 Aligned_cols=9 Identities=11% Similarity=-0.075 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 002577 95 ADEIYKILE 103 (906)
Q Consensus 95 ~~e~~~ll~ 103 (906)
.-+++.++.
T Consensus 38 ildAi~~ll 46 (553)
T PRK10869 38 AIDALGLCL 46 (553)
T ss_pred HHHHHHHHh
Confidence 334455543
No 212
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=70.72 E-value=1.2e+02 Score=32.74 Aligned_cols=102 Identities=14% Similarity=0.064 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHchHHhhHHHHHHH-HhhHHHHHHhHHHhhHHHHH---
Q 002577 703 DLEVVLQNCLKQAKMGAQQWRTAQESLLNLEKNNVAAVDSIVRGGMEANQNIHARF-SSAVSTALQDADVADSNLLT--- 778 (906)
Q Consensus 703 ~l~~~lq~~~~~~~~~~~k~~~~eks~~~L~~~~~~eldd~~~~~~~~n~~~lekk-q~~fd~~~~e~~~~~~~~~~--- 778 (906)
.|..-|++-...++++.++..+.-..+.+-. .+++.+++.+.++.+.|.... ..-+..+-+-+...|.+++.
T Consensus 3 ~mtq~LqeQ~~~F~aahaqm~sav~qL~~~r----~~teelIr~rVrq~V~hVqaqEreLLe~v~~rYqR~y~ema~~L~ 78 (324)
T PF12126_consen 3 AMTQALQEQDGAFGAAHAQMRSAVSQLGRAR----ADTEELIRARVRQVVAHVQAQERELLEAVEARYQRDYEEMAGQLG 78 (324)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888888888888888877776666666 778899998888888884443 44445666666667777754
Q ss_pred HHHhHHhhhHHHhhhhhhhhhhccchhhhhh
Q 002577 779 SIDYSLQLDQDACANLNSMIVPCCGDLRELK 809 (906)
Q Consensus 779 e~d~s~~e~r~~~t~~~~~~~~~~e~l~~le 809 (906)
.+|+..++.|.-+.=+.+|+. |--..+.|+
T Consensus 79 ~LeavLqRir~G~~LVekM~~-YASDQEVLd 108 (324)
T PF12126_consen 79 RLEAVLQRIRTGGALVEKMKL-YASDQEVLD 108 (324)
T ss_pred HHHHHHHHHHhHHHHHHHHHH-hcchHHHHH
Confidence 567778888877666666554 433344443
No 213
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=70.67 E-value=1.4e+02 Score=31.12 Aligned_cols=92 Identities=20% Similarity=0.234 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHh---hhhhhhhHHHHHHHHHHhhhhhHHh-hhHhhh----hhhHHHHHHHHHHH
Q 002577 641 QLVQMAVQDLRESASSRTSQLQKEMST---MQDSTFSVKAEWSAHMNKTESHYLE-DTSAVE----NGKKDLEVVLQNCL 712 (906)
Q Consensus 641 ~~l~~~~~~l~~~~~~~~e~leee~~~---lq~~~s~~~~e~~~~~~k~E~~~~~-~~~~~e----e~k~~l~~~lq~~~ 712 (906)
.+|...++.+++.+...+..+-.-+.. +++.+..+...+..|..+++ .++. +-+.+. ..+..+...+....
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~-~Al~~g~edLAr~al~~k~~~e~~~~~l~ 104 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAE-LALAAGREDLAREALQRKADLEEQAERLE 104 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888999999999999888888866 89999999999999998885 3332 222221 11333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 002577 713 KQAKMGAQQWRTAQESLLNLE 733 (906)
Q Consensus 713 ~~~~~~~~k~~~~eks~~~L~ 733 (906)
..+......+..+......|.
T Consensus 105 ~~~~~~~~~~~~l~~~l~~l~ 125 (221)
T PF04012_consen 105 QQLDQAEAQVEKLKEQLEELE 125 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 214
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=70.52 E-value=1.6e+02 Score=31.60 Aligned_cols=25 Identities=12% Similarity=0.347 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHh
Q 002577 478 GRLGKLKAMYGSGIKALDGIAGELD 502 (906)
Q Consensus 478 ~k~~~~~~~~~~qie~l~~~~~~l~ 502 (906)
.++.++...|+--++.-+++..++.
T Consensus 162 sk~e~L~ekynkeveerkrle~e~k 186 (307)
T PF10481_consen 162 SKYEELQEKYNKEVEERKRLEAEVK 186 (307)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444445555555555555555544
No 215
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=70.32 E-value=3.1e+02 Score=35.03 Aligned_cols=65 Identities=14% Similarity=0.074 Sum_probs=43.8
Q ss_pred HHhhHHHHHHHHhHHhhhHHHhhhhhhhhhhccchhhhhhhccccchhHHHHHHhhhhhhhccccCCCC
Q 002577 770 DVADSNLLTSIDYSLQLDQDACANLNSMIVPCCGDLRELKGGHYHKIVEITENAGKCLLNEYMVDEPSC 838 (906)
Q Consensus 770 ~~~~~~~~~e~d~s~~e~r~~~t~~~~~~~~~~e~l~~le~~~~~~~~~i~~~~~~~~~~~y~~~~~t~ 838 (906)
+.+++++..++..+-...+.+.+++-++.. .+..+++.+.+..++..+-+.+|-+.+..+---.|
T Consensus 848 k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~----~i~~~es~ie~~~~er~~lL~~ckl~~I~vPl~~g 912 (1141)
T KOG0018|consen 848 KSKFEKKEDEINEVKKILRRLVKELTKLDK----EITSIESKIERKESERHNLLSKCKLEDIEVPLSSG 912 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhhhhHHHHHHHHHHHHHHHhhhccccccccCC
Confidence 666677777777777777766666655544 44556666666677777888888888876544444
No 216
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=68.45 E-value=1.9e+02 Score=31.78 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 530 IASEADSLLNDLQSSLYKQEEKLTAYAQQQRE 561 (906)
Q Consensus 530 ~~~e~~~~~e~l~~~l~~~~~e~~~l~~q~~e 561 (906)
.-.|-..+++-|.+....+..++-.|+..+..
T Consensus 172 LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 172 LEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44566678888888888888888888876654
No 217
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=68.40 E-value=2.2e+02 Score=32.54 Aligned_cols=14 Identities=14% Similarity=0.218 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 002577 267 YSEIDRLKQEVYAA 280 (906)
Q Consensus 267 ~~Ei~~Lk~el~~~ 280 (906)
..++..++.++..+
T Consensus 80 ~~~l~~l~~~~~~l 93 (423)
T TIGR01843 80 EADAAELESQVLRL 93 (423)
T ss_pred hhHHHHHHHHHHHH
Confidence 34444444444433
No 218
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=67.82 E-value=1.2e+02 Score=33.31 Aligned_cols=73 Identities=25% Similarity=0.354 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 293 YLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKE 372 (906)
Q Consensus 293 ~~~~e~e~~~~~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~e 372 (906)
+.++-+++..+.=++..|...++.++..+..++..+ ++.-..++..+.....+...+..++..|.+
T Consensus 100 naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~--------------~eK~~elEr~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 100 NAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY--------------REKIRELERQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554455555555444444444444444 233334444455555566666666777777
Q ss_pred HHHHHHH
Q 002577 373 KDFLIAN 379 (906)
Q Consensus 373 ke~~i~~ 379 (906)
++.+|..
T Consensus 166 rdeli~k 172 (302)
T PF09738_consen 166 RDELIEK 172 (302)
T ss_pred HHHHHHH
Confidence 7666544
No 219
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=67.80 E-value=1.3e+02 Score=29.77 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 334 LTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKE 372 (906)
Q Consensus 334 ~~~eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~e 372 (906)
....+..+|..++..+..+-.....++.....+...|.+
T Consensus 28 E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~e 66 (159)
T PF05384_consen 28 EYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAE 66 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666666666666654
No 220
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=67.77 E-value=28 Score=29.24 Aligned_cols=51 Identities=24% Similarity=0.387 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETE 353 (906)
Q Consensus 303 ~~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~~ 353 (906)
++++|..|+..+...+..|.+|....-.++.....|...++.+...+....
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356777777778888888888887777777766666666666665555443
No 221
>PRK01156 chromosome segregation protein; Provisional
Probab=67.62 E-value=3.6e+02 Score=34.65 Aligned_cols=7 Identities=0% Similarity=-0.035 Sum_probs=2.8
Q ss_pred ceEEEEE
Q 002577 125 SIFSITI 131 (906)
Q Consensus 125 ~if~i~v 131 (906)
+.+.+.+
T Consensus 67 ~~V~l~f 73 (895)
T PRK01156 67 LEVELEF 73 (895)
T ss_pred EEEEEEE
Confidence 3444443
No 222
>PRK02119 hypothetical protein; Provisional
Probab=66.92 E-value=38 Score=28.85 Aligned_cols=50 Identities=18% Similarity=0.330 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 302 AMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEE 351 (906)
Q Consensus 302 ~~~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~ 351 (906)
.++++|..|+..+...+..|.+|.+..-.+++....|...++.+...+..
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888888888888888888877777666666666665544443
No 223
>PRK04325 hypothetical protein; Provisional
Probab=66.59 E-value=40 Score=28.80 Aligned_cols=50 Identities=14% Similarity=0.206 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 302 AMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEE 351 (906)
Q Consensus 302 ~~~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~ 351 (906)
.++++|..|+..+...+..|.+|.+.+-.+++....|...++.+-..+..
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888888888888888888888877777776666666665554443
No 224
>PRK00295 hypothetical protein; Provisional
Probab=66.33 E-value=47 Score=27.90 Aligned_cols=49 Identities=18% Similarity=0.298 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEE 351 (906)
Q Consensus 303 ~~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~ 351 (906)
++++|..|+..+...+..|.+|.+..-.+++....|...++.+...+..
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777778888888888877777776666666666555544443
No 225
>PRK04406 hypothetical protein; Provisional
Probab=66.23 E-value=50 Score=28.35 Aligned_cols=49 Identities=18% Similarity=0.377 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 302 AMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLE 350 (906)
Q Consensus 302 ~~~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~ 350 (906)
.++++|..|+..+...+..|.+|.+..-.+++....|...++.+...+.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888888888888887777777666666665554443
No 226
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=65.26 E-value=37 Score=41.50 Aligned_cols=85 Identities=16% Similarity=0.214 Sum_probs=30.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Q 002577 580 FFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKKFEESAANEERQ-----LLEKVAELLASSNARKKQLVQMAVQDLRESA 654 (906)
Q Consensus 580 ~~~~l~~~~~~l~~~leee~~~~~~~~~~~~~~~~e~~~~e~~~-----l~~~i~~ll~~~~~rqk~~l~~~~~~l~~~~ 654 (906)
....++.++..|+...+.- +.+-+.+........+....+... +......||-+ .+.+..+...+=.+..++
T Consensus 324 lL~~hE~Ei~~Lk~~~~~~-k~Il~~v~k~~~l~~~~~~Le~~~~D~~Rl~~RGg~LLkE--Ek~rk~i~k~lPkle~~L 400 (619)
T PF03999_consen 324 LLELHEEEIERLKEEYESR-KPILELVEKWESLWEEMEELEESSKDPSRLNNRGGHLLKE--EKERKRIQKKLPKLEEEL 400 (619)
T ss_dssp -----------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-CCGG------HHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcChhhhcccccHHHHH--HHHHHHHHHHhhHHHHHH
Confidence 3444555555555554443 333444444444444333322211 22223333222 233345555555555555
Q ss_pred HHhhHHHHHHHHh
Q 002577 655 SSRTSQLQKEMST 667 (906)
Q Consensus 655 ~~~~e~leee~~~ 667 (906)
...-..++++-..
T Consensus 401 ~~~l~~wE~e~g~ 413 (619)
T PF03999_consen 401 KKKLEEWEEEHGK 413 (619)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCC
Confidence 5555555554433
No 227
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=64.28 E-value=73 Score=26.17 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---hhhhhhhHHHHHHHH
Q 002577 637 ARKKQLVQMAVQDLRESASSRTSQLQKEMST---MQDSTFSVKAEWSAH 682 (906)
Q Consensus 637 ~rqk~~l~~~~~~l~~~~~~~~e~leee~~~---lq~~~s~~~~e~~~~ 682 (906)
-|.|..|...+..++.+.-.....|++.... ++..+..+..++..+
T Consensus 10 irakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 10 IRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677788888888777777777777776644 555555555555544
No 228
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=63.99 E-value=2.9e+02 Score=34.59 Aligned_cols=76 Identities=9% Similarity=0.124 Sum_probs=42.0
Q ss_pred CCCceeeEEeecCCCCCChHHHHHHHHHHHHhccCcccccc--chhccHHHHhHHHHHHHHHHHHHHHHHHhhcCCcC
Q 002577 213 GGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKPEI--NQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGIYI 288 (906)
Q Consensus 213 gg~~kt~~I~~isp~~~~~~eTlsTL~fa~rak~i~n~p~~--n~~~~~~~~ik~l~~Ei~~Lk~el~~~r~kn~~~~ 288 (906)
++++.++-|.--+|.+.-....+++|-=+.--.++..+-.. +...--...+..+..++...+..+...|.++|+.-
T Consensus 224 ~~~s~ii~Is~~~~dP~~Aa~ilN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d 301 (726)
T PRK09841 224 SKESGMLELTMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVD 301 (726)
T ss_pred CCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34566666666677776666666665433322222222111 11111233456666777777777778888887653
No 229
>PRK11519 tyrosine kinase; Provisional
Probab=63.69 E-value=3e+02 Score=34.39 Aligned_cols=74 Identities=12% Similarity=0.141 Sum_probs=41.6
Q ss_pred CceeeEEeecCCCCCChHHHHHHHHHHHHhccCcccc--ccchhccHHHHhHHHHHHHHHHHHHHHHHHhhcCCcC
Q 002577 215 KTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKP--EINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGIYI 288 (906)
Q Consensus 215 ~~kt~~I~~isp~~~~~~eTlsTL~fa~rak~i~n~p--~~n~~~~~~~~ik~l~~Ei~~Lk~el~~~r~kn~~~~ 288 (906)
++.++-|..-+|++.-....++++-=+.--.++..+- .-+...--...+..+..++...+..+...+.++|+.-
T Consensus 226 ~S~ii~Is~~~~dP~~Aa~iaN~l~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd 301 (719)
T PRK11519 226 DTGVLSLTYTGEDREQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVD 301 (719)
T ss_pred CceEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3566666666777777777777763332222222211 1111111233456666777777777778888888753
No 230
>PRK02793 phi X174 lysis protein; Provisional
Probab=63.45 E-value=51 Score=28.04 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 303 MAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEE 351 (906)
Q Consensus 303 ~~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~ 351 (906)
++++|..|+..+...+..|.+|.+..-.+++....|...++.+...+..
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888888888888888888888877777666666666655554443
No 231
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=63.26 E-value=3.1e+02 Score=32.41 Aligned_cols=13 Identities=38% Similarity=0.335 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHH
Q 002577 178 KSLLTLGRVINAL 190 (906)
Q Consensus 178 ~SL~~L~~vI~aL 190 (906)
+|-..+..||..+
T Consensus 78 ~Sr~v~~~vi~~l 90 (498)
T TIGR03007 78 LSRPNLEKVIRML 90 (498)
T ss_pred hChHHHHHHHHHc
Confidence 4555566666655
No 232
>PRK00736 hypothetical protein; Provisional
Probab=62.47 E-value=55 Score=27.50 Aligned_cols=48 Identities=17% Similarity=0.354 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 304 AEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEE 351 (906)
Q Consensus 304 ~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~ 351 (906)
+++|..|+..+...+..|.+|.+..-.+++....|...++.+...+..
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777778888888877777776666666666555544433
No 233
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.32 E-value=3.2e+02 Score=32.21 Aligned_cols=97 Identities=15% Similarity=0.174 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 002577 386 ALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSF 465 (906)
Q Consensus 386 ~l~~~~~~L~~~l~~~~~di~~L~~klerk~~~~~~n~~~~~~~~~eL~~~~~~l~~~i~~~~~qqe~el~~l~~~~~~~ 465 (906)
+++..+..++...+.-.+++..+.++.+. +.+....|.+++++....|+..++.+.+.+..|
T Consensus 585 e~qrH~~~l~~~k~~QlQ~l~~~~eer~~------------------i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~ 646 (741)
T KOG4460|consen 585 EIQRHVKLLCDQKKKQLQDLSYCREERKS------------------LREMAERLADRYEEAKEKQEDLMNRMKKLLHSF 646 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 34455556666666555566555554431 222233445566666666777777777777776
Q ss_pred HhHH---HHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHH
Q 002577 466 VSTK---AEATEELR---GRLGKLKAMYGSGIKALDGIAGE 500 (906)
Q Consensus 466 ~~~~---~~~l~eL~---~k~~~~~~~~~~qie~l~~~~~~ 500 (906)
.... ..+--+++ ..+.+..+.++++||.++....+
T Consensus 647 ~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 647 HSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred cccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4332 22222333 34455556667777776554444
No 234
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.21 E-value=3.2e+02 Score=32.21 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 527 FKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHSRAV 567 (906)
Q Consensus 527 l~~~~~e~~~~~e~l~~~l~~~~~e~~~l~~q~~e~~~~~l 567 (906)
|.+.+--.++.+.++.-.+..++.+...+..|+..+..+..
T Consensus 371 Las~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~d 411 (654)
T KOG4809|consen 371 LASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIED 411 (654)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44455555666777777777788888888888888887733
No 235
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=62.10 E-value=4.9e+02 Score=34.32 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=14.3
Q ss_pred CCCCCccccCcCCCchhhhccCCccHH
Q 002577 837 SCSTPRKRSFNLPSMASIEELRTPAFE 863 (906)
Q Consensus 837 t~~tp~~~~~~~p~~~sie~~rt~~~~ 863 (906)
+|++-.++.|||--. +.+...+
T Consensus 1156 ~~s~~~~rsYnyrVv-----~~kgd~e 1177 (1294)
T KOG0962|consen 1156 VSSSDKRRTYNYRVV-----MVKGDTE 1177 (1294)
T ss_pred ccccccccccceeEE-----EEechHH
Confidence 345677788888776 4555444
No 236
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=60.63 E-value=60 Score=32.03 Aligned_cols=11 Identities=18% Similarity=0.129 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 002577 538 LNDLQSSLYKQ 548 (906)
Q Consensus 538 ~e~l~~~l~~~ 548 (906)
+++......++
T Consensus 134 ~D~~~k~~~~~ 144 (155)
T PF07464_consen 134 YDDAVKAAQKV 144 (155)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 237
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=60.44 E-value=3.4e+02 Score=31.91 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=21.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 396 TELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKT 443 (906)
Q Consensus 396 ~~l~~~~~di~~L~~klerk~~~~~~n~~~~~~~~~eL~~~~~~l~~~ 443 (906)
..+.........+...++.++.............+.+|....+.|-.+
T Consensus 74 ~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ 121 (475)
T PRK10361 74 SINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANR 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444555555444444444444444444455555544433
No 238
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=60.14 E-value=4.3e+02 Score=32.99 Aligned_cols=8 Identities=50% Similarity=0.845 Sum_probs=4.4
Q ss_pred cccccccC
Q 002577 206 RLLRDSLG 213 (906)
Q Consensus 206 ~lL~dsLg 213 (906)
.++.|.||
T Consensus 446 ~il~D~lg 453 (717)
T PF10168_consen 446 AILSDVLG 453 (717)
T ss_pred EEecCCCC
Confidence 34677744
No 239
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=60.04 E-value=2.3e+02 Score=33.95 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002577 388 VERAIELRTELENAASDVSNLFAKIE 413 (906)
Q Consensus 388 ~~~~~~L~~~l~~~~~di~~L~~kle 413 (906)
...+..|...|.+....++.|..+|.
T Consensus 480 ~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 480 DRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666665
No 240
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=59.97 E-value=1.4e+02 Score=27.35 Aligned_cols=57 Identities=12% Similarity=0.171 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 314 SESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATI 370 (906)
Q Consensus 314 l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l 370 (906)
+..++..+.............+.+|...+..++........-+.+++..+.++...+
T Consensus 18 La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 18 LASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333444444444444444444444444544444444333
No 241
>PRK00846 hypothetical protein; Provisional
Probab=59.80 E-value=70 Score=27.59 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 302 AMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEET 352 (906)
Q Consensus 302 ~~~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~ 352 (906)
.++++|..|+..+...+..|.+|....-.++.....|...++-+...+...
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777888888888888888888777777666666666666555555443
No 242
>PF15556 Zwint: ZW10 interactor
Probab=59.70 E-value=2.1e+02 Score=29.20 Aligned_cols=34 Identities=3% Similarity=-0.014 Sum_probs=18.5
Q ss_pred HHHHHhhHHHHHHhHHHhhHHHHHHHHhHHhhhH
Q 002577 755 HARFSSAVSTALQDADVADSNLLTSIDYSLQLDQ 788 (906)
Q Consensus 755 lekkq~~fd~~~~e~~~~~~~~~~e~d~s~~e~r 788 (906)
-+|+-..+..+.++++..-...+.+++.+..+..
T Consensus 132 QeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~ 165 (252)
T PF15556_consen 132 QEKHLQHLAEVSAEVRERQTGTQQELERLYQELG 165 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666655556666665555443
No 243
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=59.67 E-value=2.2e+02 Score=29.48 Aligned_cols=67 Identities=24% Similarity=0.221 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 320 QLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKA 386 (906)
Q Consensus 320 ~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l~~~e~~ 386 (906)
...++...+...+..+.+|.+.+..++.+++..++-+..++....+++..++...-....+.++-..
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 3445555555555666667777777777777777777777777777766666655444444444333
No 244
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=59.60 E-value=3.6e+02 Score=31.88 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHH
Q 002577 714 QAKMGAQQWRTAQESLLNLEKNNVAAVDSIVR 745 (906)
Q Consensus 714 ~~~~~~~k~~~~eks~~~L~~~~~~eldd~~~ 745 (906)
.+++..+.|.-++.-++.+. .+..+++.
T Consensus 469 nm~~v~~~v~~a~~~m~~l~----~~t~e~ve 496 (570)
T COG4477 469 NMEAVSALVDIATEDMNTLE----DETEEVVE 496 (570)
T ss_pred cHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 34555666666666666665 55555554
No 245
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=59.60 E-value=1.8e+02 Score=28.38 Aligned_cols=11 Identities=45% Similarity=0.603 Sum_probs=6.2
Q ss_pred HHhhhhHHHHH
Q 002577 174 GEINKSLLTLG 184 (906)
Q Consensus 174 ~~iN~SL~~L~ 184 (906)
..||..|.++|
T Consensus 5 ~yiN~~L~s~G 15 (151)
T PF11559_consen 5 EYINQQLLSRG 15 (151)
T ss_pred HHHHHHHHHCC
Confidence 45566666554
No 246
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=59.56 E-value=2.4e+02 Score=31.93 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q 002577 427 QMFQSQLTQQLEIL 440 (906)
Q Consensus 427 ~~~~~eL~~~~~~l 440 (906)
..+..|++...-.|
T Consensus 194 ~eWklEvERV~PqL 207 (359)
T PF10498_consen 194 AEWKLEVERVLPQL 207 (359)
T ss_pred HHHHHHHHHHhhhh
Confidence 55566666666555
No 247
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=59.22 E-value=2.9e+02 Score=30.66 Aligned_cols=25 Identities=8% Similarity=0.170 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 533 EADSLLNDLQSSLYKQEEKLTAYAQ 557 (906)
Q Consensus 533 e~~~~~e~l~~~l~~~~~e~~~l~~ 557 (906)
-|..-++.+.+.+-.++.+...+..
T Consensus 241 tfk~Emekm~Kk~kklEKE~~~~k~ 265 (309)
T PF09728_consen 241 TFKKEMEKMSKKIKKLEKENQTWKS 265 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555
No 248
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=59.03 E-value=4.8e+02 Score=33.24 Aligned_cols=11 Identities=9% Similarity=0.413 Sum_probs=6.1
Q ss_pred CCCCCCCcccc
Q 002577 196 HVPYRDSKLTR 206 (906)
Q Consensus 196 ~ipyRdSkLT~ 206 (906)
.||+-...++-
T Consensus 558 ~IPvs~~~~~e 568 (1072)
T KOG0979|consen 558 RIPVSKREVEE 568 (1072)
T ss_pred ccccCcccccH
Confidence 36666555543
No 249
>PTZ00332 paraflagellar rod protein; Provisional
Probab=57.43 E-value=3.7e+02 Score=31.36 Aligned_cols=153 Identities=10% Similarity=0.074 Sum_probs=91.8
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhHHhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHc
Q 002577 667 TMQDSTFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVLQNCLKQAKMGAQQWRTAQESLLNLEKNNVAAVDSIVRG 746 (906)
Q Consensus 667 ~lq~~~s~~~~e~~~~~~k~E~~~~~~~~~~ee~k~~l~~~lq~~~~~~~~~~~k~~~~eks~~~L~~~~~~eldd~~~~ 746 (906)
.++.++.+++.+=.+-+++|+++ -+.+ +.-++.-.+.-+.++.++..++.-.++|+ ++=-+.|.+
T Consensus 282 ~i~d~iq~~~~eDa~~~KRy~a~----k~~S-------e~f~~~N~e~Qe~~wnrI~eLer~Lq~l~----~eR~~eV~r 346 (589)
T PTZ00332 282 HIHDAIQKADLEDAEAMKRYATN----KEKS-------ERFIRENEDRQEEAWNKIQDLERQLQRLG----TERFEEVKR 346 (589)
T ss_pred HHHHHHHhcCchhHHHHHHHHhh----hhhH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 37888888888888888888744 2233 33455556666666677777777777777 333333333
Q ss_pred hHHhhHHHHHHH--HhhHHHHHHhHHHhhHHHHHHHHhHHhhhHHHhhhhhhhhhhccchhhhhhhccccchhHHHHHHh
Q 002577 747 GMEANQNIHARF--SSAVSTALQDADVADSNLLTSIDYSLQLDQDACANLNSMIVPCCGDLRELKGGHYHKIVEITENAG 824 (906)
Q Consensus 747 ~~~~n~~~lekk--q~~fd~~~~e~~~~~~~~~~e~d~s~~e~r~~~t~~~~~~~~~~e~l~~le~~~~~~~~~i~~~~~ 824 (906)
+...+..--.+. -..|-.+.+..++.........|.+..-+. .+...+..-+..+........+.+++++..++
T Consensus 347 RIe~~~rEekRr~~yeqFl~~asQHkqrL~~tv~Ncd~a~~~~~----~lee~V~egc~~i~~r~DK~~q~L~elll~V~ 422 (589)
T PTZ00332 347 RIEENDREEKRRVEYQQFLEVAGQHKKLLELTVYNCDLALRCTG----LVEELVSEGCAAVKARHDKTNQDLAALRLQVH 422 (589)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333222221111 124666777777777777777776654433 34444444444555555556677888888888
Q ss_pred hhhhhhccccCCCC
Q 002577 825 KCLLNEYMVDEPSC 838 (906)
Q Consensus 825 ~~~~~~y~~~~~t~ 838 (906)
+-++.-|..+--||
T Consensus 423 ke~Le~FR~lYltl 436 (589)
T PTZ00332 423 KEHLEYFRMLYLTL 436 (589)
T ss_pred HHHHHHHHHHHHHH
Confidence 87777777544443
No 250
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=56.52 E-value=1.9e+02 Score=30.40 Aligned_cols=65 Identities=22% Similarity=0.328 Sum_probs=46.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002577 509 FGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVENARSVS 574 (906)
Q Consensus 509 le~l~~~~~s~~~~~~k~l~~~~~e~~~~~e~l~~~l~~~~~e~~~l~~q~~e~~~~~le~~~~~~ 574 (906)
+++|.-.-..+|-.....|-..+.||.+.|-.....+++...++..+.+ .++.+.+.++.+..+.
T Consensus 152 ~~EmK~~Nkenylrfa~KLG~~~~efn~~f~she~~l~dkekEl~sfK~-sEeeNar~V~kAnsVl 216 (311)
T PF04642_consen 152 FDEMKEVNKENYLRFAGKLGKLILEFNSVFLSHEDQLSDKEKELESFKR-SEEENARAVEKANSVL 216 (311)
T ss_pred hHHHhhhhhhhhhhhHHHHHHHHHHhhccccccccccccHHHHHHHHhh-hhhhhHHHHHHHHHHH
Confidence 4444444444555555567778888999999999999999999999987 6666666666666554
No 251
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=56.52 E-value=3.1e+02 Score=30.25 Aligned_cols=20 Identities=10% Similarity=0.039 Sum_probs=9.7
Q ss_pred HHHHHHHHHhhHHHHHHHHh
Q 002577 648 QDLRESASSRTSQLQKEMST 667 (906)
Q Consensus 648 ~~l~~~~~~~~e~leee~~~ 667 (906)
.+.--||..+-+.|.+|..+
T Consensus 279 hnysLdcRrLfDsLreEnlg 298 (401)
T PF06785_consen 279 HNYSLDCRRLFDSLREENLG 298 (401)
T ss_pred ccchHHHHHHHhhhcccccc
Confidence 33334455555555555544
No 252
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=56.34 E-value=1.8e+02 Score=27.37 Aligned_cols=39 Identities=28% Similarity=0.345 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 363 HRQANATIKEKDFLIANLLKSEKALVERAIELRTELENA 401 (906)
Q Consensus 363 l~~~~~~l~eke~~i~~l~~~e~~l~~~~~~L~~~l~~~ 401 (906)
..+++.+++--+..+..+.+.++.+..+...|+..|...
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555556666666666666666655544
No 253
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=55.86 E-value=3.5e+02 Score=30.65 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCCCCCCCCCccc
Q 002577 182 TLGRVINALVEHSGHVPYRDSKLT 205 (906)
Q Consensus 182 ~L~~vI~aL~~~~~~ipyRdSkLT 205 (906)
+..+++.+|..-+..+-|=-|||.
T Consensus 72 ~~~~Il~~lr~~g~~~df~p~kLk 95 (359)
T PF10498_consen 72 TISNILDELRKLGVPVDFPPSKLK 95 (359)
T ss_pred HHHHHHHHHHccCCCCCCChHHhh
Confidence 344555555554444445555554
No 254
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=55.07 E-value=48 Score=28.02 Aligned_cols=54 Identities=7% Similarity=0.039 Sum_probs=43.5
Q ss_pred HhhHHHHHHHHhhHHHHHHhHHHhhHHHHHHHHhHHhhhHHHhhhhhhhhhhcc
Q 002577 749 EANQNIHARFSSAVSTALQDADVADSNLLTSIDYSLQLDQDACANLNSMIVPCC 802 (906)
Q Consensus 749 ~~n~~~lekkq~~fd~~~~e~~~~~~~~~~e~d~s~~e~r~~~t~~~~~~~~~~ 802 (906)
.+--++++..|..|.+-..+|...|.++...+..+.++...++..+-.+.....
T Consensus 6 ~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~ 59 (70)
T PF04899_consen 6 KQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQ 59 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345577899999999999999999999999999998888777666655555333
No 255
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=54.83 E-value=3.2e+02 Score=29.87 Aligned_cols=30 Identities=33% Similarity=0.385 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002577 380 LLKSEKALVERAIELRTELENAASDVSNLF 409 (906)
Q Consensus 380 l~~~e~~l~~~~~~L~~~l~~~~~di~~L~ 409 (906)
+......+...+..+...-.++...|..|.
T Consensus 46 ln~kvrE~~e~~~elr~~rdeineev~elK 75 (294)
T COG1340 46 LNAKVRELREKAQELREERDEINEEVQELK 75 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444443333
No 256
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=54.47 E-value=3.9e+02 Score=30.70 Aligned_cols=91 Identities=15% Similarity=0.145 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHhhHhHHHHHHHHHHHHHHHHH
Q 002577 448 VTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLF 527 (906)
Q Consensus 448 ~~qqe~el~~l~~~~~~~~~~~~~~l~eL~~k~~~~~~~~~~qie~l~~~~~~l~k~~~~~le~l~~~~~s~~~~~~k~l 527 (906)
...++..+..+...+..-+.-....+.+-+-+...+-+.+++.++.-+.=... ++.+|..+-..+.-++
T Consensus 228 ~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~----LKqeLa~~EEK~~Yqs------- 296 (395)
T PF10267_consen 228 QSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYN----LKQELASMEEKMAYQS------- 296 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHH-------
Confidence 33445555555554444345555566666666655555555555543322222 2223333333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002577 528 KGIASEADSLLNDLQSSLYKQE 549 (906)
Q Consensus 528 ~~~~~e~~~~~e~l~~~l~~~~ 549 (906)
.+.+.|+...++.++..+++++
T Consensus 297 ~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 297 YERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 3367788888889998888888
No 257
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=53.92 E-value=2.7e+02 Score=28.73 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 002577 391 AIELRTELENAASDVSNLFAKIE 413 (906)
Q Consensus 391 ~~~L~~~l~~~~~di~~L~~kle 413 (906)
+..|+..+..+..++.+|...+.
T Consensus 82 a~lLrekl~~le~El~~Lr~~l~ 104 (202)
T PF06818_consen 82 AELLREKLGQLEAELAELREELA 104 (202)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHH
Confidence 33444444444444444444443
No 258
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=53.63 E-value=4e+02 Score=30.60 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhHHhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 659 SQLQKEMSTMQDSTFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVLQNCLKQAKMGAQQWRTAQ 726 (906)
Q Consensus 659 e~leee~~~lq~~~s~~~~e~~~~~~k~E~~~~~~~~~~ee~k~~l~~~lq~~~~~~~~~~~k~~~~e 726 (906)
+++-+.++.-|..+..++.++...-+|.+-..-+ +..+.|+.++.+..++..+|
T Consensus 265 eqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~e--------------RaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 265 EQLNDLTELHQNEIYNLKQELASMEEKMAYQSYE--------------RARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHH
Confidence 3333333334444455888888876766544333 67777888888888888888
No 259
>PLN03188 kinesin-12 family protein; Provisional
Probab=53.37 E-value=6.6e+02 Score=33.09 Aligned_cols=90 Identities=14% Similarity=0.148 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHhHhHHHH---HHHHHHHHHHHHHH
Q 002577 412 IERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLK---DMEEDMQSFVSTKAE---ATEELRGRLGKLKA 485 (906)
Q Consensus 412 lerk~~~~~~n~~~~~~~~~eL~~~~~~l~~~i~~~~~qqe~el~---~l~~~~~~~~~~~~~---~l~eL~~k~~~~~~ 485 (906)
|+.++.--.+++..|-.+..+|--.++-.......+..+++.+-. .|...|+-.+-.|.+ ...+|.++|.++.+
T Consensus 1049 l~~er~~w~e~es~wislteelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~ 1128 (1320)
T PLN03188 1049 LEQERLRWTEAESKWISLAEELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLA 1128 (1320)
T ss_pred HHHHHHHHHHHhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445566666555555544444433333333334433322 233445544555554 44588888888776
Q ss_pred H---HHhhHHHHHHHHHHH
Q 002577 486 M---YGSGIKALDGIAGEL 501 (906)
Q Consensus 486 ~---~~~qie~l~~~~~~l 501 (906)
. +.++|+.+++++++-
T Consensus 1129 ~hr~i~egi~dvkkaaaka 1147 (1320)
T PLN03188 1129 RHRRIQEGIDDVKKAAARA 1147 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5 468888888887763
No 260
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=53.37 E-value=3e+02 Score=29.09 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhhH
Q 002577 640 KQLVQMAVQDLRESASSRTS 659 (906)
Q Consensus 640 k~~l~~~~~~l~~~~~~~~e 659 (906)
|..+...|+-|++++..++.
T Consensus 159 ke~llesvqRLkdEardlrq 178 (333)
T KOG1853|consen 159 KEVLLESVQRLKDEARDLRQ 178 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555543
No 261
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=53.03 E-value=4.7e+02 Score=31.23 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 467 STKAEATEELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLY 546 (906)
Q Consensus 467 ~~~~~~l~eL~~k~~~~~~~~~~qie~l~~~~~~l~k~~~~~le~l~~~~~s~~~~~~k~l~~~~~e~~~~~e~l~~~l~ 546 (906)
......+..++..+.+....+....+.+......+.......... ...+.-+++. +.....++...-..++..+.
T Consensus 291 ~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~e~~l~~~e----l~~~~ee~~~~~s~~~~k~~ 365 (511)
T PF09787_consen 291 QLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTT-EAELRLYYQE----LYHYREELSRQKSPLQLKLK 365 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHH----HHHHHHHHHHhcChHHHHHH
Confidence 334444555555555555555555554444444433321111111 1112222222 33334444555555555666
Q ss_pred HHHHHHHHHHHHHH
Q 002577 547 KQEEKLTAYAQQQR 560 (906)
Q Consensus 547 ~~~~e~~~l~~q~~ 560 (906)
.-..|+..++.++.
T Consensus 366 ~ke~E~q~lr~~l~ 379 (511)
T PF09787_consen 366 EKESEIQKLRNQLS 379 (511)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666443
No 262
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=52.98 E-value=3.1e+02 Score=29.24 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q 002577 394 LRTELENAASDVSNLFAKIE 413 (906)
Q Consensus 394 L~~~l~~~~~di~~L~~kle 413 (906)
|...+.+....|..|....+
T Consensus 80 Le~e~~e~~~~i~~l~ee~~ 99 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESE 99 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333
No 263
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=52.25 E-value=4.9e+02 Score=31.25 Aligned_cols=14 Identities=43% Similarity=0.418 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 002577 473 TEELRGRLGKLKAM 486 (906)
Q Consensus 473 l~eL~~k~~~~~~~ 486 (906)
+..|.++...+...
T Consensus 344 ~~~Le~~~~~l~~~ 357 (557)
T COG0497 344 LEALEKEVKKLKAE 357 (557)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 264
>PF15556 Zwint: ZW10 interactor
Probab=52.18 E-value=2.8e+02 Score=28.35 Aligned_cols=81 Identities=14% Similarity=0.273 Sum_probs=53.5
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhHHhhhHhhhhhhHHHHHHHHHHH
Q 002577 633 ASSNARKKQLVQMAVQDLRESASSRTSQLQKEMSTMQDSTFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVLQNCL 712 (906)
Q Consensus 633 ~~~~~rqk~~l~~~~~~l~~~~~~~~e~leee~~~lq~~~s~~~~e~~~~~~k~E~~~~~~~~~~ee~k~~l~~~lq~~~ 712 (906)
++-.+|++ ++. ..+....++..|.++++++-..++.+-.++.+.-.|+ ..+.++-..+..+-+-+.
T Consensus 53 SedtsRqk-ai~-----aKeQWKeLKAtYqehVEaIk~alt~aL~q~eEaqrK~--------~qLqeA~eqlqaKKqva~ 118 (252)
T PF15556_consen 53 SEDTSRQK-AIE-----AKEQWKELKATYQEHVEAIKSALTQALPQVEEAQRKR--------TQLQEALEQLQAKKQVAM 118 (252)
T ss_pred chhHHHHH-HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 44456665 333 3467888999999999996555555555554443333 344555566666667777
Q ss_pred HHHHHHHHHHHHHHH
Q 002577 713 KQAKMGAQQWRTAQE 727 (906)
Q Consensus 713 ~~~~~~~~k~~~~ek 727 (906)
+.+..+..+|.--+.
T Consensus 119 eK~r~AQkqwqlqQe 133 (252)
T PF15556_consen 119 EKLRAAQKQWQLQQE 133 (252)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888999987663
No 265
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=52.10 E-value=2.6e+02 Score=28.04 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002577 359 LEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEEGN 422 (906)
Q Consensus 359 le~~l~~~~~~l~eke~~i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L~~klerk~~~~~~n 422 (906)
++.....+...++++...+..+...-..-..........+.........+...|........+.
T Consensus 47 Lkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~ 110 (177)
T PF13870_consen 47 LKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKL 110 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555544444444445555555555555555555555444433333
No 266
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=51.93 E-value=1.8e+02 Score=30.33 Aligned_cols=12 Identities=17% Similarity=0.387 Sum_probs=6.8
Q ss_pred HHHHHHhccCcc
Q 002577 238 LDYAHRAKNIKN 249 (906)
Q Consensus 238 L~fa~rak~i~n 249 (906)
|-|.+-+++|.+
T Consensus 57 llfiDsvr~i~~ 68 (216)
T KOG1962|consen 57 LLFIDSVRRIQK 68 (216)
T ss_pred HHHHHHHHHHHH
Confidence 455666666554
No 267
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=51.71 E-value=2.2e+02 Score=27.08 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 002577 391 AIELRTELENAASDVSNLFAKIE 413 (906)
Q Consensus 391 ~~~L~~~l~~~~~di~~L~~kle 413 (906)
+..+...++.....+.+|..||.
T Consensus 98 v~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 98 VSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 268
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=51.63 E-value=4.4e+02 Score=31.15 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=8.0
Q ss_pred hhhhHHHHHHHHHHHh
Q 002577 176 INKSLLTLGRVINALV 191 (906)
Q Consensus 176 iN~SL~~L~~vI~aL~ 191 (906)
|+.||..|.++...++
T Consensus 215 ~~~sl~~l~~~~~k~a 230 (518)
T PF10212_consen 215 ILSSLVSLTNGTGKIA 230 (518)
T ss_pred HHHHHHHHHhhhHHHH
Confidence 4455555555544444
No 269
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=50.51 E-value=2.9e+02 Score=28.19 Aligned_cols=54 Identities=15% Similarity=0.122 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 388 VERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILH 441 (906)
Q Consensus 388 ~~~~~~L~~~l~~~~~di~~L~~klerk~~~~~~n~~~~~~~~~eL~~~~~~l~ 441 (906)
...+...+..+.....-..+....|..+..+....+..+..+..+|..-..+++
T Consensus 115 ~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~ 168 (188)
T PF05335_consen 115 KAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYE 168 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555666666666666666666666666555555555554
No 270
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=49.93 E-value=4.9e+02 Score=30.55 Aligned_cols=22 Identities=36% Similarity=0.338 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 002577 427 QMFQSQLTQQLEILHKTVATSV 448 (906)
Q Consensus 427 ~~~~~eL~~~~~~l~~~i~~~~ 448 (906)
.+.+.+++...++++++.++..
T Consensus 267 ~da~~ql~aE~~EleDkyAE~m 288 (596)
T KOG4360|consen 267 KDAQRQLTAELEELEDKYAECM 288 (596)
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666665555443
No 271
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=49.85 E-value=31 Score=38.00 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Q 002577 388 VERAIELRTELENAASDVSNLFAK 411 (906)
Q Consensus 388 ~~~~~~L~~~l~~~~~di~~L~~k 411 (906)
...+..|+..+..+.-+|..|...
T Consensus 111 ~ssIS~Lqs~v~~lsTdvsNLksd 134 (326)
T PF04582_consen 111 SSSISDLQSSVSALSTDVSNLKSD 134 (326)
T ss_dssp -------HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhhhhhhhhhhhhhhh
Confidence 333344444444444444444433
No 272
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=49.49 E-value=2.4e+02 Score=26.85 Aligned_cols=96 Identities=17% Similarity=0.312 Sum_probs=49.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHhhHhHHHHHHHHHHHHHH
Q 002577 445 ATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALE 524 (906)
Q Consensus 445 ~~~~~qqe~el~~l~~~~~~~~~~~~~~l~eL~~k~~~~~~~~~~qie~l~~~~~~l~k~~~~~le~l~~~~~s~~~~~~ 524 (906)
.....+++++++.+............+..+.+...+.+....+.+-.+.+.++...-+-. - .+
T Consensus 26 ~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r----------~-------yk 88 (126)
T PF09403_consen 26 ESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVR----------W-------YK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGS----------T-------TH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchh----------H-------HH
Confidence 333445566666665554444344444444555555555554444333333333321110 0 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 525 DLFKGIASEADSLLNDLQSSLYKQEEKLTAYAQ 557 (906)
Q Consensus 525 k~l~~~~~e~~~~~e~l~~~l~~~~~e~~~l~~ 557 (906)
+-+...+...+..+.+|.+.+.+++..++.|..
T Consensus 89 ~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe~ 121 (126)
T PF09403_consen 89 DEYKELLKKYKDLLNKLDKEIAEQEQIIDNFEK 121 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234445666667777777777777777776655
No 273
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=49.41 E-value=3.7e+02 Score=29.05 Aligned_cols=13 Identities=0% Similarity=0.179 Sum_probs=5.2
Q ss_pred CCcHHHHHHHHHH
Q 002577 16 AGVIPRAVKQIFD 28 (906)
Q Consensus 16 ~Giipr~~~~lF~ 28 (906)
-+++--++.||-.
T Consensus 19 F~LVAeiL~WLv~ 31 (267)
T PF10234_consen 19 FELVAEILRWLVK 31 (267)
T ss_pred hHHHHHHHHHHHH
Confidence 3444444444433
No 274
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=48.52 E-value=6e+02 Score=31.15 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=16.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHh
Q 002577 261 AMIKDLYSEIDRLKQEVYAARE 282 (906)
Q Consensus 261 ~~ik~l~~Ei~~Lk~el~~~r~ 282 (906)
.+|-.--.||.+|..++..+|+
T Consensus 66 elis~qlqE~rrle~e~~~lre 87 (739)
T PF07111_consen 66 ELISRQLQELRRLEEEVRALRE 87 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666888899998888774
No 275
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=48.34 E-value=3.9e+02 Score=31.53 Aligned_cols=70 Identities=17% Similarity=0.260 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002577 337 ELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLF 409 (906)
Q Consensus 337 eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L~ 409 (906)
.|...+...+.+...+...+......+..+++.| +-.+.+++.....+.+.++.|..+|......|+.|.
T Consensus 445 aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL---~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 445 ALQKRLESAEKEKESLEEELKEANQNISRLQDEL---ETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344333333333333433333333333222 222344455555566667777777776666666654
No 276
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=48.33 E-value=3.2e+02 Score=27.92 Aligned_cols=27 Identities=30% Similarity=0.451 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 303 MAEKIERMELESESKDKQLMELQELYN 329 (906)
Q Consensus 303 ~~eki~~le~~l~~~e~~l~~L~~~~~ 329 (906)
...++..+...++.....+.+++..+.
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~ 93 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIE 93 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 277
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=47.82 E-value=4.6e+02 Score=29.62 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHhcC
Q 002577 178 KSLLTLGRVINALVEH 193 (906)
Q Consensus 178 ~SL~~L~~vI~aL~~~ 193 (906)
-+.+.||-||..+.++
T Consensus 7 ~~vlvLgGVIA~~gD~ 22 (499)
T COG4372 7 PFVLVLGGVIAYAGDT 22 (499)
T ss_pred HHHHHHHhHHHHHhhH
Confidence 4677899999998774
No 278
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=47.78 E-value=3.2e+02 Score=27.79 Aligned_cols=31 Identities=3% Similarity=0.242 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 002577 452 EQQLKDMEEDMQSFVSTKAEATEELRGRLGK 482 (906)
Q Consensus 452 e~el~~l~~~~~~~~~~~~~~l~eL~~k~~~ 482 (906)
-.++..+++.+.++...-+..|.+++..+..
T Consensus 147 Wr~v~~lRr~f~elr~~TerdL~~~r~e~~r 177 (182)
T PF15035_consen 147 WREVVALRRQFAELRTATERDLSDMRAEFAR 177 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4555666666666666666666666655543
No 279
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=47.48 E-value=35 Score=37.64 Aligned_cols=75 Identities=17% Similarity=0.316 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002577 337 ELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAK 411 (906)
Q Consensus 337 eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L~~k 411 (906)
++...+..+...+..++..+..+...+..+...+..-.-.|..+......+...+.+|+..+-...-.|..|+..
T Consensus 74 ~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~R 148 (326)
T PF04582_consen 74 DMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESR 148 (326)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHH
Confidence 333333333333333334444443334444434443444444444444444444444444444443334444333
No 280
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=47.15 E-value=5.7e+02 Score=30.54 Aligned_cols=34 Identities=29% Similarity=0.335 Sum_probs=20.1
Q ss_pred CCCCCccccCcCCCchhhhccCCccHHHHHHhhccccC
Q 002577 837 SCSTPRKRSFNLPSMASIEELRTPAFEELLRSFWDVKS 874 (906)
Q Consensus 837 t~~tp~~~~~~~p~~~sie~~rt~~~~~ll~~~~~~~~ 874 (906)
++..|..+.-..-+. .-|-.+.+.+.+.|.+...
T Consensus 421 sa~rpgar~e~~~~~----~~rl~~le~i~~~~~gv~~ 454 (514)
T TIGR03319 421 SAARPGARRESLENY----IKRLEKLEEIANSFEGVEK 454 (514)
T ss_pred cCCCCCCcccCHHHH----HHHHHHHHHHHHhCCCchh
Confidence 344566664322222 3577778888888877655
No 281
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=47.04 E-value=4.4e+02 Score=29.25 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhHHHHH
Q 002577 394 LRTELENAASDVSNLF 409 (906)
Q Consensus 394 L~~~l~~~~~di~~L~ 409 (906)
++..+..++.|+..+.
T Consensus 138 ~~~q~~qLe~d~qs~l 153 (319)
T PF09789_consen 138 LREQIEQLERDLQSLL 153 (319)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333433333
No 282
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.04 E-value=4.3e+02 Score=29.09 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHh-hhhhhhhHHH
Q 002577 639 KKQLVQMAVQDLRESASSRTSQLQKEMST-MQDSTFSVKA 677 (906)
Q Consensus 639 qk~~l~~~~~~l~~~~~~~~e~leee~~~-lq~~~s~~~~ 677 (906)
|...+..++..+-.+....+..|.++... ++|++..++.
T Consensus 124 q~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~ 163 (297)
T KOG0810|consen 124 QTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGG 163 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Confidence 44455556666667777777777777744 8888877766
No 283
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=47.01 E-value=6.3e+02 Score=30.99 Aligned_cols=38 Identities=18% Similarity=0.042 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 404 DVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILH 441 (906)
Q Consensus 404 di~~L~~klerk~~~~~~n~~~~~~~~~eL~~~~~~l~ 441 (906)
.+++|...|.++++..-.|+.....++..|+..-..|.
T Consensus 92 ~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~ 129 (916)
T KOG0249|consen 92 LNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQ 129 (916)
T ss_pred chHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhH
Confidence 36778888888888877777777666666655444444
No 284
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.12 E-value=1.7e+02 Score=24.82 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 302 AMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLE 350 (906)
Q Consensus 302 ~~~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~ 350 (906)
.++++|..|+......++.|.+|...+-.+......+..+++-+-+++.
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~ 53 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLK 53 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777777766555544444444444444333
No 285
>PTZ00464 SNF-7-like protein; Provisional
Probab=44.65 E-value=3.9e+02 Score=27.88 Aligned_cols=34 Identities=6% Similarity=0.099 Sum_probs=16.4
Q ss_pred chHHhhHHHHHHHHhhHHHHHHhHHHhhHHHHHHHH
Q 002577 746 GGMEANQNIHARFSSAVSTALQDADVADSNLLTSID 781 (906)
Q Consensus 746 ~~~~~n~~~lekkq~~fd~~~~e~~~~~~~~~~e~d 781 (906)
++..+-...+-+..+.++ ++.+....+++....+
T Consensus 105 ~amk~g~kaLK~~~k~i~--id~Vd~l~Dei~E~~e 138 (211)
T PTZ00464 105 DAMKQAAKTLKKQFKKLN--VDKVEDLQDELADLYE 138 (211)
T ss_pred HHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHH
Confidence 444455555555555553 4444444444443333
No 286
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=44.37 E-value=7.5e+02 Score=31.14 Aligned_cols=403 Identities=14% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--
Q 002577 374 DFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQ-- 451 (906)
Q Consensus 374 e~~i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L~~klerk~~~~~~n~~~~~~~~~eL~~~~~~l~~~i~~~~~qq-- 451 (906)
+..........-.+.......+..+......+..++-.+...+.+..+|..-.. +|....-.+...-..+...+
T Consensus 336 ~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~e----qLr~elaql~a~r~q~eka~~~ 411 (980)
T KOG0980|consen 336 EQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQE----QLRNELAQLLASRTQLEKAQVL 411 (980)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 002577 452 EQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIA 531 (906)
Q Consensus 452 e~el~~l~~~~~~~~~~~~~~l~eL~~k~~~~~~~~~~qie~l~~~~~~l~k~~~~~le~l~~~~~s~~~~~~k~l~~~~ 531 (906)
-.+.....-..+.....+.....+|+..|.++..-|..-..++......+. ++++.+.++...+.. +.+..
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~-----~~~~~~~~L~d~le~----~~~~~ 482 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSID-----DVEEENTNLNDQLEE----LQRAA 482 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHH----HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHH------Hhhhhh
Q 002577 532 SEADSLLNDLQSSLYKQEEKLTAYAQQQREAHSRAVENARSVSKVTVNFFKTLDMHASNLTKIVEEAQ------TVNDQK 605 (906)
Q Consensus 532 ~e~~~~~e~l~~~l~~~~~e~~~l~~q~~e~~~~~le~~~~~~~~~~~~~~~l~~~~~~l~~~leee~------~~~~~~ 605 (906)
..+..+.++..+.+..++.|+..+..+....-....-..++-+.....+-..+.+-...+....-.+. ......
T Consensus 483 ~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~s 562 (980)
T KOG0980|consen 483 GRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEEREALRLEAERS 562 (980)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHHHHH------------------HHHhhHHHHHHHH
Q 002577 606 LFEFEKKFEESAANEERQLLEKVA-ELLASSNARKKQLVQMAVQDLRES------------------ASSRTSQLQKEMS 666 (906)
Q Consensus 606 ~~~~~~~~~e~~~~e~~~l~~~i~-~ll~~~~~rqk~~l~~~~~~l~~~------------------~~~~~e~leee~~ 666 (906)
+.+.+-.-....+....++..... -++..........|+..+.++..- ....-.+++..-.
T Consensus 563 i~ql~l~~~~~~ea~~tQ~~~~~~~~il~~~~~~~~q~lq~al~~ld~P~~~~~~~~p~~Llst~~~~s~n~~~~e~~~~ 642 (980)
T KOG0980|consen 563 INQLELDSSASTEAGITQLQDDLNDPILDGSLASGIQALQNALYQLDSPLHWRCLTSPDFLLSTAENASVNATQFETSFN 642 (980)
T ss_pred HHHhhcccccchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCcccCcCCCHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred h-------hhhhhhhHHHHHHHHHHhhhhhHHhhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHh
Q 002577 667 T-------MQDSTFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVLQNCLKQAKMGAQQWRTAQESLLNLEKNNVAA 739 (906)
Q Consensus 667 ~-------lq~~~s~~~~e~~~~~~k~E~~~~~~~~~~ee~k~~l~~~lq~~~~~~~~~~~k~~~~eks~~~L~~~~~~e 739 (906)
. +-..+-.+.........++=....-....+-+.=+++......|...+........+.. +..+-+ ..
T Consensus 643 ~yla~~~d~s~~i~~v~~fs~~~~~~~~na~a~~~ta~~e~~d~v~~l~k~~~~~a~~~~~~l~~~~-al~~~d----~~ 717 (980)
T KOG0980|consen 643 NYLADGDDASDLIHCVTLFSHLISTTINNAKATAYTASPEGSDRVNDLCKKCGREALAFLVSLSSEN-ALERGD----EM 717 (980)
T ss_pred hhcCCchhhhhHhhHHHHHHHHHHHHHhcchhheeccCCchhHHHHHHHHHHHHHHHHHHHHHhhhh-HHHhhH----HH
Q ss_pred HHHHHHchHHhhHHHH---------HHHHhhHHHHHHhHHHhhHHHHHHHHhHHhhhHHHhhhh
Q 002577 740 VDSIVRGGMEANQNIH---------ARFSSAVSTALQDADVADSNLLTSIDYSLQLDQDACANL 794 (906)
Q Consensus 740 ldd~~~~~~~~n~~~l---------ekkq~~fd~~~~e~~~~~~~~~~e~d~s~~e~r~~~t~~ 794 (906)
+-+.......+...-+ +-.-.-+|+-+++-.+..++...++.+....+|+.++.+
T Consensus 718 ~l~~~lq~~~~~~eel~~~~~di~~e~l~~lld~ema~t~aAI~~A~~rie~~~~Kar~ss~~~ 781 (980)
T KOG0980|consen 718 LLRQYLQTLNQLGEELLPKELDIDQELLGNLLDIEMAETDAAIEDAVSRIEAIAAKARESSSGV 781 (980)
T ss_pred HHHHHHHHHHHHhHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
No 287
>PRK10698 phage shock protein PspA; Provisional
Probab=43.80 E-value=4.1e+02 Score=27.90 Aligned_cols=46 Identities=13% Similarity=0.131 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHHHHHHHHHHhh
Q 002577 637 ARKKQLVQMAVQDLRESASSRTSQLQKEMSTMQDSTFSVKAEWSAHMNKT 686 (906)
Q Consensus 637 ~rqk~~l~~~~~~l~~~~~~~~e~leee~~~lq~~~s~~~~e~~~~~~k~ 686 (906)
-..|......+..|+..........+. |+..+..++..+..|+.|-
T Consensus 91 L~~K~~~~~~~~~l~~~~~~~~~~~~~----L~~~l~~L~~ki~eak~k~ 136 (222)
T PRK10698 91 LIEKQKLTDLIATLEHEVTLVDETLAR----MKKEIGELENKLSETRARQ 136 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333322222 5555555666666665555
No 288
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=43.70 E-value=1.8e+02 Score=23.88 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 325 QELYNSQLLLTAELSEKLEKTEKKLEETEHALSD 358 (906)
Q Consensus 325 ~~~~~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~ 358 (906)
+..+..+....+.+..+|.++......+...|.+
T Consensus 3 QsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqe 36 (61)
T PF08826_consen 3 QSALEAEIRAKQAIQEELTKVKSANLAFESKLQE 36 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443433333333
No 289
>PF04394 DUF536: Protein of unknown function, DUF536; InterPro: IPR007489 This is a C-terminal region from several bacterial proteins of unknown function that may be involved in a theta-type replication mechanism.
Probab=43.36 E-value=1.1e+02 Score=23.56 Aligned_cols=40 Identities=43% Similarity=0.498 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 312 LESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEE 351 (906)
Q Consensus 312 ~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~ 351 (906)
..+..++.+|.++...++.++...-.....++.++..+++
T Consensus 3 ~Ql~~kd~qI~~l~kLLDQQQ~L~L~~~k~le~L~~el~E 42 (45)
T PF04394_consen 3 EQLEEKDKQIEELQKLLDQQQQLALQDNKKLEELKAELEE 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888999999988887777777777777766654
No 290
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=42.98 E-value=4e+02 Score=27.52 Aligned_cols=15 Identities=27% Similarity=0.647 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 002577 316 SKDKQLMELQELYNS 330 (906)
Q Consensus 316 ~~e~~l~~L~~~~~~ 330 (906)
..+..+.++..-|+.
T Consensus 6 ~He~af~~iK~YYnd 20 (201)
T PF13851_consen 6 NHEKAFQEIKNYYND 20 (201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555443
No 291
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=42.96 E-value=7.2e+02 Score=30.52 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 002577 264 KDLYSEIDRLKQEVYAAREKN 284 (906)
Q Consensus 264 k~l~~Ei~~Lk~el~~~r~kn 284 (906)
.++..++..-..++...+++|
T Consensus 94 dklE~~Lankda~lrq~eekn 114 (916)
T KOG0249|consen 94 DKLENELANKDADLRQNEEKN 114 (916)
T ss_pred HHHHHHHhCcchhhchhHHhh
Confidence 455555555555555555554
No 292
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=42.55 E-value=1.7e+02 Score=31.39 Aligned_cols=29 Identities=28% Similarity=0.404 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002577 385 KALVERAIELRTELENAASDVSNLFAKIE 413 (906)
Q Consensus 385 ~~l~~~~~~L~~~l~~~~~di~~L~~kle 413 (906)
......+..|+..++.+.+|.-.|.+|+.
T Consensus 103 r~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 103 RKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777777777777777765
No 293
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=42.10 E-value=1.2e+02 Score=34.01 Aligned_cols=8 Identities=25% Similarity=0.239 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 002577 182 TLGRVINA 189 (906)
Q Consensus 182 ~L~~vI~a 189 (906)
+|..-..+
T Consensus 90 ~L~~A~~a 97 (344)
T PF12777_consen 90 ALEEAQEA 97 (344)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 294
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=41.92 E-value=5.8e+02 Score=30.73 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=10.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q 002577 397 ELENAASDVSNLFAKIERKDK 417 (906)
Q Consensus 397 ~l~~~~~di~~L~~klerk~~ 417 (906)
.+......|..|.-+|..+..
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~ 495 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKK 495 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566655554444
No 295
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.51 E-value=6.4e+02 Score=29.54 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHH
Q 002577 384 EKALVERAIELRTEL---ENAASDVSNLFAKIERK 415 (906)
Q Consensus 384 e~~l~~~~~~L~~~l---~~~~~di~~L~~klerk 415 (906)
|++|...+..|...+ .+...++.+|++.++..
T Consensus 413 EE~Lr~Kldtll~~ln~Pnq~k~Rl~~L~e~~r~q 447 (508)
T KOG3091|consen 413 EEELRAKLDTLLAQLNAPNQLKARLDELYEILRMQ 447 (508)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhh
Confidence 344444444444444 23445555555555443
No 296
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=41.34 E-value=4.2e+02 Score=27.35 Aligned_cols=95 Identities=20% Similarity=0.291 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 267 YSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTE 346 (906)
Q Consensus 267 ~~Ei~~Lk~el~~~r~kn~~~~~~e~~~~~e~e~~~~~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e 346 (906)
..||.-||.+|......- ..--.+...+...+......+...+..+..+...+..........+.++....
T Consensus 9 ~GEIsLLKqQLke~q~E~---------~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~ 79 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEV---------NQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKK 79 (202)
T ss_pred hhhHHHHHHHHHHHHHHH---------HHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHh
Confidence 356777777765443211 01112233344455555555556666666666555443333334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 347 KKLEETEHALSDLEEKHRQANATI 370 (906)
Q Consensus 347 ~~l~~~~~~l~~le~~l~~~~~~l 370 (906)
.....+...+..++..+..+...+
T Consensus 80 ~Ea~lLrekl~~le~El~~Lr~~l 103 (202)
T PF06818_consen 80 NEAELLREKLGQLEAELAELREEL 103 (202)
T ss_pred CHHHHhhhhhhhhHHHHHHHHHHH
Confidence 444444445555555554444433
No 297
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=40.38 E-value=3.3e+02 Score=25.90 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 350 EETEHALSDLEEKHRQANATIKEKDFLIANLLK 382 (906)
Q Consensus 350 ~~~~~~l~~le~~l~~~~~~l~eke~~i~~l~~ 382 (906)
+..++.+.+....+.+++..+++++.+|.++..
T Consensus 89 ~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe~ 121 (126)
T PF09403_consen 89 DEYKELLKKYKDLLNKLDKEIAEQEQIIDNFEK 121 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666667777777776666544
No 298
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=39.91 E-value=2.4e+02 Score=24.10 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002577 367 NATIKEKDFLIANLLKSEKALVE 389 (906)
Q Consensus 367 ~~~l~eke~~i~~l~~~e~~l~~ 389 (906)
...|++++..|..|..--+.|..
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk 26 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSK 26 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Confidence 33455555555555544444433
No 299
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=39.85 E-value=5e+02 Score=27.74 Aligned_cols=23 Identities=0% Similarity=0.296 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Q 002577 473 TEELRGRLGKLKAMYGSGIKALD 495 (906)
Q Consensus 473 l~eL~~k~~~~~~~~~~qie~l~ 495 (906)
...++.+.....+..+..|..++
T Consensus 212 fNgmksEWA~V~~AwkneLsEIN 234 (353)
T PF01540_consen 212 FNGMKSEWARVQEAWKNELSEIN 234 (353)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 300
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=39.47 E-value=4.7e+02 Score=27.32 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=47.7
Q ss_pred HhHHHHHHchHHhhHHHHHHHHhhHHHHHHhHHHhhHHHHHHHHhHHhhhHHHhhhhhhhhhhccchhhhhh
Q 002577 738 AAVDSIVRGGMEANQNIHARFSSAVSTALQDADVADSNLLTSIDYSLQLDQDACANLNSMIVPCCGDLRELK 809 (906)
Q Consensus 738 ~eldd~~~~~~~~n~~~lekkq~~fd~~~~e~~~~~~~~~~e~d~s~~e~r~~~t~~~~~~~~~~e~l~~le 809 (906)
.+.++++.++...-...+.+.+..-+.++++. .+..+.++..+..+-.+.++.+...+..+.+....
T Consensus 88 ~ea~~il~~a~~~a~~v~~~a~~~a~~~~~~a-----~~~~e~e~~~~q~~~~~~rl~~~~~~ql~~~~~~~ 154 (212)
T COG3599 88 AEADDILKRASAQAQRVFGKAQYKADRYLEDA-----KIAQELEDLKRQAQVERQRLRSDIEAQLASAKQED 154 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 56677776665554455666666667777766 68888899999999998888888776666554443
No 301
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=38.71 E-value=3.5e+02 Score=25.72 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=17.0
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002577 460 EDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKAL 494 (906)
Q Consensus 460 ~~~~~~~~~~~~~l~eL~~k~~~~~~~~~~qie~l 494 (906)
+-|..++....+.++.+.+.+...+..+...|+.+
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~v 73 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRV 73 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555444443
No 302
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=38.51 E-value=6.2e+02 Score=28.49 Aligned_cols=104 Identities=14% Similarity=0.165 Sum_probs=49.2
Q ss_pred cCCCceeeEEeecCCCCCChHHHHHHH-----HHHHHhccCccccccchhccHHHHhHHHHHHHHHHHHHHHHHHhhcCC
Q 002577 212 LGGKTKTCIIATVSPSIHCLEETLSTL-----DYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGI 286 (906)
Q Consensus 212 Lgg~~kt~~I~~isp~~~~~~eTlsTL-----~fa~rak~i~n~p~~n~~~~~~~~ik~l~~Ei~~Lk~el~~~r~kn~~ 286 (906)
..+.+.++-|---++++.......+++ .|.... .....-....--...+..+..++...+..+...+.++|+
T Consensus 126 ~~~~s~ii~I~~~~~dP~~A~~ian~l~~~~~~~i~~~---~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~ 202 (362)
T TIGR01010 126 VDSVSGILTLNVTAFDAEEAQKINQRLLKEGERLINRL---NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKV 202 (362)
T ss_pred ecCCCCeEEEEEEecCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345566666665666666655555555 222211 000000000011233455556666666666777788887
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 287 YIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQ 325 (906)
Q Consensus 287 ~~~~e~~~~~e~e~~~~~eki~~le~~l~~~e~~l~~L~ 325 (906)
..|.... ......+..++..+...+.++..+.
T Consensus 203 ~d~~~~~-------~~~~~~i~~L~~~l~~~~~~l~~l~ 234 (362)
T TIGR01010 203 FDPKAQS-------SAQLSLISTLEGELIRVQAQLAQLR 234 (362)
T ss_pred cChHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554321 1222334444444444444444444
No 303
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=38.11 E-value=6.3e+02 Score=28.46 Aligned_cols=269 Identities=13% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 471 EATEELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQEE 550 (906)
Q Consensus 471 ~~l~eL~~k~~~~~~~~~~qie~l~~~~~~l~k~~~~~le~l~~~~~s~~~~~~k~l~~~~~e~~~~~e~l~~~l~~~~~ 550 (906)
..+..--+.+....+.+-.+.+..+......+..-....+-.....+-.+.+.+..+.-.+.|++... ++-+.+++.
T Consensus 294 ~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqH---qRELekLre 370 (593)
T KOG4807|consen 294 EALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQH---QRELEKLRE 370 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 551 KLTAYAQQQREAHSRAVENARSVSKVTVNFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKKFEESAANEERQLLEKVAE 630 (906)
Q Consensus 551 e~~~l~~q~~e~~~~~le~~~~~~~~~~~~~~~l~~~~~~l~~~leee~~~~~~~~~~~~~~~~e~~~~e~~~l~~~i~~ 630 (906)
++..|-.+.--+....+++.+.+-
T Consensus 371 EKdrLLAEETAATiSAIEAMKnAh-------------------------------------------------------- 394 (593)
T KOG4807|consen 371 EKDRLLAEETAATISAIEAMKNAH-------------------------------------------------------- 394 (593)
T ss_pred HHHhhhhhhhhhhhHHHHHHHHHH--------------------------------------------------------
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhHHhhhHhhhhhhHHHHHHHHH
Q 002577 631 LLASSNARKKQLVQMAVQDLRESASSRTSQLQKEMSTMQDSTFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVLQN 710 (906)
Q Consensus 631 ll~~~~~rqk~~l~~~~~~l~~~~~~~~e~leee~~~lq~~~s~~~~e~~~~~~k~E~~~~~~~~~~ee~k~~l~~~lq~ 710 (906)
...-.+--.+.++++.+.+.++.++.++..+ ++.++......|-..+++ ...+..+-..=..-|..
T Consensus 395 ------rEEmeRELeKsqSvnsdveaLRrQyleelqs-------vqRELeVLSEQYSQKCLE-nahLaqalEaerqaLRq 460 (593)
T KOG4807|consen 395 ------REEMERELEKSQSVNSDVEALRRQYLEELQS-------VQRELEVLSEQYSQKCLE-NAHLAQALEAERQALRQ 460 (593)
T ss_pred ------HHHHHHHHHhhhccccChHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHH------------chHHhhHHHHHHHHhhHHHHHHhHHHhhHHHHH
Q 002577 711 CLKQAKMGAQQWRTAQESLLNLEKNNVAAVDSIVR------------GGMEANQNIHARFSSAVSTALQDADVADSNLLT 778 (906)
Q Consensus 711 ~~~~~~~~~~k~~~~eks~~~L~~~~~~eldd~~~------------~~~~~n~~~lekkq~~fd~~~~e~~~~~~~~~~ 778 (906)
|.......++..+.+. +||. .|++-+.. -+..-.+-.++-.-+.-..-+.=.++....+-.
T Consensus 461 CQrEnQELnaHNQELn---nRLa----aEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkD 533 (593)
T KOG4807|consen 461 CQRENQELNAHNQELN---NRLA----AEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKD 533 (593)
T ss_pred HHHhhHHHHHHHHHHh---hHHH----HHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHhhhHHHh-------hhhhhhhhhccchhhhhhhccccchhHH
Q 002577 779 SIDYSLQLDQDAC-------ANLNSMIVPCCGDLRELKGGHYHKIVEI 819 (906)
Q Consensus 779 e~d~s~~e~r~~~-------t~~~~~~~~~~e~l~~le~~~~~~~~~i 819 (906)
++-.++++-+=.+ +++--.+.--+-.+..|.+.+.-....|
T Consensus 534 ELQtalrDKkyaSdKYkDiYtELSiaKakadcdIsrLKEqLkaAteAL 581 (593)
T KOG4807|consen 534 ELQTALRDKKYASDKYKDIYTELSIAKAKADCDISRLKEQLKAATEAL 581 (593)
T ss_pred HHHHHHhhhhccccchhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHh
No 304
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=37.45 E-value=8.7e+02 Score=29.86 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh-------hHHhhHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 002577 471 EATEELRGRLGKLKAMYGSGIKALDGIAGELDG-------NSRSTFGDLNSEVSKHSHA-LEDLFKGIASEADSLLNDLQ 542 (906)
Q Consensus 471 ~~l~eL~~k~~~~~~~~~~qie~l~~~~~~l~k-------~~~~~le~l~~~~~s~~~~-~~k~l~~~~~e~~~~~e~l~ 542 (906)
+.+++++.++..+.+++..-++.+...+..+.. .......+++..+..+... .+..-.....-+..++..+.
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~ 239 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLK 239 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHH
Confidence 556666666666666666665555555555443 2233333444444433320 01112233444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002577 543 SSLYKQEEKLTAYAQQQREAHSR 565 (906)
Q Consensus 543 ~~l~~~~~e~~~l~~q~~e~~~~ 565 (906)
.....--..+..++.+..+.|.+
T Consensus 240 ~~k~qr~~kl~~l~~~~~~LWn~ 262 (660)
T KOG4302|consen 240 EEKKQRLQKLQDLRTKLLELWNL 262 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555577788888888887
No 305
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=37.37 E-value=4.5e+02 Score=26.55 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=12.4
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 002577 262 MIKDLYSEIDRLKQEVYAA 280 (906)
Q Consensus 262 ~ik~l~~Ei~~Lk~el~~~ 280 (906)
.++.|+..|.+|.-+-..+
T Consensus 5 ALK~LQeKIrrLELER~qA 23 (178)
T PF14073_consen 5 ALKNLQEKIRRLELERSQA 23 (178)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677788887776554443
No 306
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=37.07 E-value=4.4e+02 Score=26.36 Aligned_cols=89 Identities=22% Similarity=0.266 Sum_probs=43.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 288 IPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQAN 367 (906)
Q Consensus 288 ~~~e~~~~~e~e~~~~~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~ 367 (906)
+....|.++..+...+.++|+.-+ ..+..|...+..-.....-+..++..+...+......+.+.+..+..+.
T Consensus 39 L~~iDFeqLkien~~l~~kIeERn-------~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r 111 (177)
T PF13870_consen 39 LHLIDFEQLKIENQQLNEKIEERN-------KELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLR 111 (177)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666555555555554433 3444444444444444444444555555555555555555555555554
Q ss_pred HHHHHHHHHHHHHHHH
Q 002577 368 ATIKEKDFLIANLLKS 383 (906)
Q Consensus 368 ~~l~eke~~i~~l~~~ 383 (906)
..+..-...+..+...
T Consensus 112 ~~l~~~k~~r~k~~~~ 127 (177)
T PF13870_consen 112 EELYRVKKERDKLRKQ 127 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444443333333
No 307
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=37.05 E-value=5.3e+02 Score=27.30 Aligned_cols=51 Identities=12% Similarity=0.282 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 386 ALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILH 441 (906)
Q Consensus 386 ~l~~~~~~L~~~l~~~~~di~~L~~klerk~~~~~~n~~~~~~~~~eL~~~~~~l~ 441 (906)
+|+..+..+.+.+.+-......+++++.. +.|......+.+.|-..++.|+
T Consensus 5 KLQ~Eid~~lKkv~EG~~~F~~i~~K~~~-----~~n~~QKEK~E~DLKkEIKKLQ 55 (233)
T PF04065_consen 5 KLQQEIDRTLKKVQEGVEEFDEIYEKVES-----ATNQNQKEKLEADLKKEIKKLQ 55 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccCcchHHHHHHHHHHHHHHHH
Confidence 45555566666666666666777776663 3444455555555555555443
No 308
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=36.95 E-value=5.3e+02 Score=27.24 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=38.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhh--cCCcC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 261 AMIKDLYSEIDRLKQEVYAAREK--NGIYI-PRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAE 337 (906)
Q Consensus 261 ~~ik~l~~Ei~~Lk~el~~~r~k--n~~~~-~~e~~~~~e~e~~~~~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~e 337 (906)
..|..+..++..+..+|..+... ..... ..-.+.+++.........+......+......+..+...-........+
T Consensus 45 ~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~ 124 (240)
T PF12795_consen 45 KQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSE 124 (240)
T ss_pred HHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 34555666666666666666443 11111 1112233333333333444444444444444444444444443333334
Q ss_pred HHHHHHHHHHH
Q 002577 338 LSEKLEKTEKK 348 (906)
Q Consensus 338 L~~~l~~~e~~ 348 (906)
....+......
T Consensus 125 ~~~~l~ei~~~ 135 (240)
T PF12795_consen 125 ARQRLQEIRNQ 135 (240)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 309
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=36.55 E-value=9.5e+02 Score=30.34 Aligned_cols=11 Identities=0% Similarity=0.211 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 002577 265 DLYSEIDRLKQ 275 (906)
Q Consensus 265 ~l~~Ei~~Lk~ 275 (906)
.+..++..+..
T Consensus 385 tfS~~m~~~~~ 395 (771)
T TIGR01069 385 TFSGHMKNISA 395 (771)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 310
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=36.34 E-value=5.9e+02 Score=27.58 Aligned_cols=47 Identities=38% Similarity=0.390 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 384 EKALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQ 430 (906)
Q Consensus 384 e~~l~~~~~~L~~~l~~~~~di~~L~~klerk~~~~~~n~~~~~~~~ 430 (906)
...+..++..++..+.+...|-..|..||++++.....+++....++
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666778888888889999999999999888777777765544
No 311
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=36.31 E-value=5.8e+02 Score=27.55 Aligned_cols=101 Identities=18% Similarity=0.222 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 263 IKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKL 342 (906)
Q Consensus 263 ik~l~~Ei~~Lk~el~~~r~kn~~~~~~e~~~~~e~e~~~~~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l 342 (906)
+....-++..|+..|....+....+ +.|...+.++.....+++....+++.....+...+..+........+....|
T Consensus 161 Lesa~vkV~WLR~~L~Ei~Ea~e~~---~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl 237 (269)
T PF05278_consen 161 LESAKVKVDWLRSKLEEILEAKEIY---DQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRL 237 (269)
T ss_pred HHHcCcchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 343 EKTEKKLEETEHALSDLEEKHRQA 366 (906)
Q Consensus 343 ~~~e~~l~~~~~~l~~le~~l~~~ 366 (906)
..++.+...+.+.+..+.......
T Consensus 238 ~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 238 GELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
No 312
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=35.76 E-value=7.4e+02 Score=28.55 Aligned_cols=75 Identities=17% Similarity=0.139 Sum_probs=34.3
Q ss_pred CCCCCCCccccccccccCCCceeeEEeecCCCCCChHHHHHHHHHHHHhccCccccccchhcc----HHHHhHHHHHHHH
Q 002577 196 HVPYRDSKLTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRAKNIKNKPEINQKMM----KSAMIKDLYSEID 271 (906)
Q Consensus 196 ~ipyRdSkLT~lL~dsLgg~~kt~~I~~isp~~~~~~eTlsTL~fa~rak~i~n~p~~n~~~~----~~~~ik~l~~Ei~ 271 (906)
..|||++-.-+=. .+-.+.|++ ...+...-.+|...+.++..|-..-.-+..+. -..++..+..+++
T Consensus 83 ~~p~r~~~~~~~~--------~~~~~~~~~-~~~~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~ 153 (447)
T KOG2751|consen 83 SPPVRDSDTEHNL--------SFELGENGS-DGSNTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVE 153 (447)
T ss_pred cCccccccccccc--------ccccccccc-hhhhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHH
Confidence 4688876444333 333333332 22333333345555666666533222222111 2345555666666
Q ss_pred HHHHHHHH
Q 002577 272 RLKQEVYA 279 (906)
Q Consensus 272 ~Lk~el~~ 279 (906)
.++++...
T Consensus 154 ~~~~e~~~ 161 (447)
T KOG2751|consen 154 DAEDEVDT 161 (447)
T ss_pred HHHHHHHH
Confidence 66655543
No 313
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=35.02 E-value=4e+02 Score=29.76 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 322 MELQELYNSQLLLTAELSEKLEKTEK 347 (906)
Q Consensus 322 ~~L~~~~~~~~~~~~eL~~~l~~~e~ 347 (906)
.+|++.+.+.++.......+++.+.+
T Consensus 7 ~eL~~efq~Lqethr~Y~qKleel~~ 32 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLEELSK 32 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 314
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=35.01 E-value=5.1e+02 Score=26.44 Aligned_cols=36 Identities=17% Similarity=0.416 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 002577 452 EQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMY 487 (906)
Q Consensus 452 e~el~~l~~~~~~~~~~~~~~l~eL~~k~~~~~~~~ 487 (906)
..++..+...+..+...--..+..+++.+..+++..
T Consensus 116 ~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~a 151 (188)
T PF03962_consen 116 KKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAA 151 (188)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333345555655555555443
No 315
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.20 E-value=8.3e+02 Score=28.68 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=7.3
Q ss_pred CCCCCCCCcccccc
Q 002577 195 GHVPYRDSKLTRLL 208 (906)
Q Consensus 195 ~~ipyRdSkLT~lL 208 (906)
..+||=++.-|.=+
T Consensus 228 ~tv~~~e~~~~l~~ 241 (508)
T KOG3091|consen 228 VTVRYAEGTSTLTL 241 (508)
T ss_pred cccccCCCcccccc
Confidence 35666666544433
No 316
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=34.16 E-value=4.4e+02 Score=30.56 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=20.1
Q ss_pred cccccccccCCCceeeEEeecCCCCCChHHHHHHHHHHHHh
Q 002577 204 LTRLLRDSLGGKTKTCIIATVSPSIHCLEETLSTLDYAHRA 244 (906)
Q Consensus 204 LT~lL~dsLgg~~kt~~I~~isp~~~~~~eTlsTL~fa~ra 244 (906)
|..||.-+=|-||.+--++|..-......-+.+-|.|+.++
T Consensus 511 ~~nLl~h~k~R~~qvpg~~~~a~~~~~~~~sa~EleeGk~l 551 (790)
T PF07794_consen 511 LANLLRHIKGRNCQVPGVCNYAQAACYADMSAKELEEGKTL 551 (790)
T ss_pred HHHHHHHHhcccccCCchhhHHhhhhhcccchhhhhhhHHH
Confidence 45566666666665544443333322233344555555554
No 317
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.93 E-value=5.3e+02 Score=26.35 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=18.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhc
Q 002577 261 AMIKDLYSEIDRLKQEVYAAREKN 284 (906)
Q Consensus 261 ~~ik~l~~Ei~~Lk~el~~~r~kn 284 (906)
..|.+|..++.+++.++...|...
T Consensus 33 ~KIskLDaeL~k~~~Qi~k~R~gp 56 (218)
T KOG1655|consen 33 KKISKLDAELCKYKDQIKKTRPGP 56 (218)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCc
Confidence 457888888888888888887544
No 318
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=33.77 E-value=4.7e+02 Score=25.68 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q 002577 572 SVSKVTVNFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKKFEESAANEERQLLEKVAELLASSNARKKQLVQMAVQDLR 651 (906)
Q Consensus 572 ~~~~~~~~~~~~l~~~~~~l~~~leee~~~~~~~~~~~~~~~~e~~~~e~~~l~~~i~~ll~~~~~rqk~~l~~~~~~l~ 651 (906)
.+++.+...+..+..-+..+...++..-+..-..++.++...++ -+.-..|+.+++.++
T Consensus 81 ~mS~~Tv~~~~~y~~sv~~~cdsvD~sik~~y~liakceELn~~---------------------M~~v~~La~qIK~Ik 139 (149)
T PF10157_consen 81 SMSAITVEHMETYKDSVDKLCDSVDASIKSMYTLIAKCEELNES---------------------MKPVYKLAQQIKDIK 139 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Confidence 34444444444555555555555555533333333333333322 223345666666666
Q ss_pred HHHHHh
Q 002577 652 ESASSR 657 (906)
Q Consensus 652 ~~~~~~ 657 (906)
.-++.+
T Consensus 140 ~~lD~l 145 (149)
T PF10157_consen 140 KLLDLL 145 (149)
T ss_pred HHHHHH
Confidence 665544
No 319
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=33.33 E-value=7.6e+02 Score=27.95 Aligned_cols=105 Identities=17% Similarity=0.188 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHhhHhHH
Q 002577 433 LTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDL 512 (906)
Q Consensus 433 L~~~~~~l~~~i~~~~~qqe~el~~l~~~~~~~~~~~~~~l~eL~~k~~~~~~~~~~qie~l~~~~~~l~k~~~~~le~l 512 (906)
+...+++|+ .|..+++.++.-+..|+.++.--+.-..+.|++=|=+...+-+.+++-.+.-+.-..+ ++.++.-+
T Consensus 262 l~aileeL~-eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~n----LKqElasm 336 (455)
T KOG3850|consen 262 LDAILEELR-EIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIAN----LKQELASM 336 (455)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHH
Confidence 444444444 3444555555555555555544444444445544444443333333222221111111 22222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 513 NSEVSKHSHALEDLFKGIASEADSLLNDLQSSLYKQE 549 (906)
Q Consensus 513 ~~~~~s~~~~~~k~l~~~~~e~~~~~e~l~~~l~~~~ 549 (906)
...+. |++ -+.+.+....++.++..+++++
T Consensus 337 eerva--YQs-----yERaRdIqEalEscqtrisKlE 366 (455)
T KOG3850|consen 337 EERVA--YQS-----YERARDIQEALESCQTRISKLE 366 (455)
T ss_pred HHHHH--HHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 111 2356777888888888888876
No 320
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=33.27 E-value=4.3e+02 Score=25.12 Aligned_cols=14 Identities=21% Similarity=0.190 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 002577 426 IQMFQSQLTQQLEI 439 (906)
Q Consensus 426 ~~~~~~eL~~~~~~ 439 (906)
+.+|..+|++++..
T Consensus 91 R~~fe~qLE~lm~q 104 (134)
T PF15233_consen 91 RLDFEEQLEDLMGQ 104 (134)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555554443
No 321
>PF13514 AAA_27: AAA domain
Probab=33.24 E-value=1.3e+03 Score=30.57 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 267 YSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQ 325 (906)
Q Consensus 267 ~~Ei~~Lk~el~~~r~kn~~~~~~e~~~~~e~e~~~~~eki~~le~~l~~~e~~l~~L~ 325 (906)
..++..++.++..... ....|.............+..+...+..+..++..++
T Consensus 156 l~~l~e~~~~l~~~~~------~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~le 208 (1111)
T PF13514_consen 156 LKELKELERELREAEV------RAAEYQELQQALEEAEEELEELRAELKELRAELRRLE 208 (1111)
T ss_pred HHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666655542 2356666555555555555665555555555444443
No 322
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=33.21 E-value=7.2e+02 Score=27.66 Aligned_cols=39 Identities=31% Similarity=0.365 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002577 381 LKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIE 419 (906)
Q Consensus 381 ~~~e~~l~~~~~~L~~~l~~~~~di~~L~~klerk~~~~ 419 (906)
......|...+..|+..+.+++.|+.-|..++.+.+...
T Consensus 78 re~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~ 116 (319)
T PF09789_consen 78 REQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGD 116 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhh
Confidence 334455677778888888888888888888887665543
No 323
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=33.13 E-value=7e+02 Score=27.50 Aligned_cols=23 Identities=22% Similarity=0.083 Sum_probs=11.1
Q ss_pred EeecCCCCCChHHHHHHHHHHHH
Q 002577 221 IATVSPSIHCLEETLSTLDYAHR 243 (906)
Q Consensus 221 I~~isp~~~~~~eTlsTL~fa~r 243 (906)
|-|+||....+.|.--.-+-|.|
T Consensus 12 ~d~~s~e~~~laearlaakraar 34 (405)
T KOG2010|consen 12 KDRFSAEDEALAEARLAAKRAAR 34 (405)
T ss_pred ccccCHhHHHHHHHHHHHHHHhH
Confidence 45666665555554333333333
No 324
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=32.80 E-value=6.2e+02 Score=26.80 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002577 338 LSEKLEKTEKKLEETEHAL 356 (906)
Q Consensus 338 L~~~l~~~e~~l~~~~~~l 356 (906)
+..++.+-+.-+...-..+
T Consensus 83 Ws~el~~Qe~vF~~q~~qv 101 (254)
T KOG2196|consen 83 WSLELEEQERVFLQQATQV 101 (254)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333
No 325
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=32.74 E-value=1.1e+03 Score=29.51 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=10.3
Q ss_pred Eeeecccc--ccCCccccCCCC
Q 002577 146 CGKLNLVD--LAGSENISRSGA 165 (906)
Q Consensus 146 ~skl~lVD--LAGsE~~~~~~~ 165 (906)
++.--|+| |-|+++.-+...
T Consensus 731 sasaefs~ee~Lgh~nPikd~d 752 (1424)
T KOG4572|consen 731 SASAEFSDEELLGHENPIKDED 752 (1424)
T ss_pred hhhhhhhhHhhcCCCCCCCCCc
Confidence 34444554 467776544433
No 326
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=32.66 E-value=4e+02 Score=24.53 Aligned_cols=27 Identities=7% Similarity=0.153 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002577 387 LVERAIELRTELENAASDVSNLFAKIE 413 (906)
Q Consensus 387 l~~~~~~L~~~l~~~~~di~~L~~kle 413 (906)
|..+.......+.++++.|+++...++
T Consensus 49 L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 49 LQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 327
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.55 E-value=8.8e+02 Score=28.48 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=12.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 002577 402 ASDVSNLFAKIERKDKIEEGNRIL 425 (906)
Q Consensus 402 ~~di~~L~~klerk~~~~~~n~~~ 425 (906)
..++..|..++++.+.+....+++
T Consensus 154 ~~q~Esls~~le~~~~~~~~~~kl 177 (613)
T KOG0992|consen 154 TQQIESLSEELERLRPIESVAEKL 177 (613)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344556666666555544444443
No 328
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=31.68 E-value=1e+03 Score=28.84 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=9.7
Q ss_pred CCCCCCCCccccccccc
Q 002577 195 GHVPYRDSKLTRLLRDS 211 (906)
Q Consensus 195 ~~ipyRdSkLT~lL~ds 211 (906)
.+|||-+.-+-.+....
T Consensus 38 ~~vP~~e~lv~~~e~~~ 54 (582)
T PF09731_consen 38 EYVPYGEELVDYIEEEE 54 (582)
T ss_pred HhCCcHHHHHHHHhhhc
Confidence 35888765555554443
No 329
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=31.57 E-value=7.1e+02 Score=27.07 Aligned_cols=135 Identities=16% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Q 002577 387 LVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFV 466 (906)
Q Consensus 387 l~~~~~~L~~~l~~~~~di~~L~~klerk~~~~~~n~~~~~~~~~eL~~~~~~l~~~i~~~~~qqe~el~~l~~~~~~~~ 466 (906)
+...+..++-.+..+..--.++.+++. ........+..+...-++.+..+-..+-.|+...++..++.-..
T Consensus 218 ~k~DakDWR~H~~QM~s~~~nIe~~~~-------~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~-- 288 (384)
T KOG0972|consen 218 LKQDAKDWRLHLEQMNSMHKNIEQKVG-------NVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDT-- 288 (384)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhhc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHhhHhHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 002577 467 STKAEATEELRGRLGKLKAMYGSGIKALDGIAGELDGNSRSTFGDLNSEVS--KHSHALEDLFKGIASEADSL 537 (906)
Q Consensus 467 ~~~~~~l~eL~~k~~~~~~~~~~qie~l~~~~~~l~k~~~~~le~l~~~~~--s~~~~~~k~l~~~~~e~~~~ 537 (906)
+++++.+.......+.++-+.|..+-.++++ ++.++|+-.+..+ +.+..+++.+.-.-.|...+
T Consensus 289 ------lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~-~KqemEe~G~~msDGaplvkIkqavsKLk~et~~m 354 (384)
T KOG0972|consen 289 ------LSELREKYKQASVGVSSRTETLDEVMDEIEQ-LKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTM 354 (384)
T ss_pred ------HHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhh
No 330
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=31.43 E-value=6.5e+02 Score=26.61 Aligned_cols=77 Identities=25% Similarity=0.294 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 304 AEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANL 380 (906)
Q Consensus 304 ~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l 380 (906)
..++-.+.-.+...-....+|+...+.-.....+|+.++..++++-.+..-.+.=++..+.-+-.+-.++..+|..+
T Consensus 22 hHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~Li~~l 98 (277)
T PF15030_consen 22 HHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNRLITHL 98 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333333444444444444444555555555555555555555555555555555555555555444
No 331
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=31.43 E-value=5.2e+02 Score=25.53 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 002577 429 FQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLG 481 (906)
Q Consensus 429 ~~~eL~~~~~~l~~~i~~~~~qqe~el~~l~~~~~~~~~~~~~~l~eL~~k~~ 481 (906)
+.++.......++..+-.+. +++++.+....+.|..+....+-.|...+.
T Consensus 89 ~~a~~~~~~~~~ea~L~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~ 138 (155)
T PRK06569 89 LESEFLIKKKNLEQDLKNSI---NQNIEDINLAAKQFRTNKSEAIIKLAVNII 138 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33344444444444433332 556666666666666666666655555444
No 332
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=31.42 E-value=8.8e+02 Score=28.16 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 341 KLEKTEKKLEETEHALSDLEEKHRQANATIKE 372 (906)
Q Consensus 341 ~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~e 372 (906)
.+..+..++..+...|.+++.-+...+..+++
T Consensus 247 qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkK 278 (424)
T PF03915_consen 247 QLETVAKDISRASKELKKMKEYIKTEKPIWKK 278 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 34444444455555555554444444444333
No 333
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.38 E-value=1.1e+03 Score=29.07 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 530 IASEADSLLNDLQSSLYKQEEKLTAYAQQQREAHSR 565 (906)
Q Consensus 530 ~~~e~~~~~e~l~~~l~~~~~e~~~l~~q~~e~~~~ 565 (906)
...+..+.+..+...+.......+.+..+..++...
T Consensus 378 ~ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~ 413 (716)
T KOG4593|consen 378 GITEEETKLKELHETLARRLQKRALLLTQERDLNRA 413 (716)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667777777777777666655555554
No 334
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=31.36 E-value=6.1e+02 Score=26.30 Aligned_cols=69 Identities=4% Similarity=0.097 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhHHhhhHhhhhhhHHHHHHHHHHHH
Q 002577 645 MAVQDLRESASSRTSQLQKEMSTMQDSTFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVLQNCLK 713 (906)
Q Consensus 645 ~~~~~l~~~~~~~~e~leee~~~lq~~~s~~~~e~~~~~~k~E~~~~~~~~~~ee~k~~l~~~lq~~~~ 713 (906)
.++..+..++.......+.....++.....++.++..|...--.++...+....+..-.....+-+.|+
T Consensus 163 ~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We 231 (236)
T PF09325_consen 163 DKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWE 231 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544456666666888888885544456655444444444444444444443
No 335
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=31.13 E-value=5.1e+02 Score=30.15 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 318 DKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIK 371 (906)
Q Consensus 318 e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~ 371 (906)
+.++..|.+.|++-.+....+..++.+.+..|......+..++..+..++..+.
T Consensus 27 e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vd 80 (604)
T KOG3564|consen 27 EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVD 80 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHH
Confidence 445555666666555555556666666666666666666655555555544443
No 336
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=31.10 E-value=8.5e+02 Score=27.84 Aligned_cols=13 Identities=15% Similarity=0.169 Sum_probs=6.2
Q ss_pred HHhhHhHHHHHHH
Q 002577 505 SRSTFGDLNSEVS 517 (906)
Q Consensus 505 ~~~~le~l~~~~~ 517 (906)
++.+++.+.+.+.
T Consensus 258 l~~EveRlrt~l~ 270 (552)
T KOG2129|consen 258 LQAEVERLRTYLS 270 (552)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555554444
No 337
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=30.91 E-value=2.7e+02 Score=24.52 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhh-cCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 263 IKDLYSEIDRLKQEVYAAREK-NGIYIPRDRYLQEEAEKKAMAEKIERMELESESK 317 (906)
Q Consensus 263 ik~l~~Ei~~Lk~el~~~r~k-n~~~~~~e~~~~~e~e~~~~~eki~~le~~l~~~ 317 (906)
|..+.+.+...+..+.+...+ .+..++++....++.++..+..++...+..+..+
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~L 62 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLL 62 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 445555555555555544332 3445666666666665555555555544444333
No 338
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.29 E-value=5.6e+02 Score=27.90 Aligned_cols=64 Identities=19% Similarity=0.316 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 295 QEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEE 361 (906)
Q Consensus 295 ~~e~e~~~~~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~le~ 361 (906)
+.+.++..+.++.....+.+..+..++..+.+++..++. +|...|..+...+..+...+.+++.
T Consensus 119 k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~---Els~~L~~l~~~~~~~s~~~~k~es 182 (300)
T KOG2629|consen 119 KLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQS---ELSRALASLKNTLVQLSRNIEKLES 182 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 345566667777777777777777777777766665544 5555555555544444444444333
No 339
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=30.29 E-value=6.4e+02 Score=26.16 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 002577 448 VTQQEQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMYGSG 490 (906)
Q Consensus 448 ~~qqe~el~~l~~~~~~~~~~~~~~l~eL~~k~~~~~~~~~~q 490 (906)
..+|+.++..+.+.+......+...+..+..++-.-+..+..+
T Consensus 80 k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke 122 (206)
T PF14988_consen 80 KEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKE 122 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666655666666666665555555444433
No 340
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.17 E-value=3.3e+02 Score=22.83 Aligned_cols=29 Identities=21% Similarity=0.110 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 304 AEKIERMELESESKDKQLMELQELYNSQL 332 (906)
Q Consensus 304 ~eki~~le~~l~~~e~~l~~L~~~~~~~~ 332 (906)
++||.+.-.-+.-++-++.+|.+.-+...
T Consensus 10 E~KiqqAvdTI~LLQmEieELKEknn~l~ 38 (79)
T COG3074 10 EAKVQQAIDTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Confidence 34444444444444445555554444333
No 341
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=30.07 E-value=6.2e+02 Score=29.62 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=10.5
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 002577 262 MIKDLYSEIDRLKQEVYAAR 281 (906)
Q Consensus 262 ~ik~l~~Ei~~Lk~el~~~r 281 (906)
-++.|-.++..++.++..+.
T Consensus 60 TlrTlva~~k~~r~~~~~l~ 79 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLI 79 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444
No 342
>PRK10869 recombination and repair protein; Provisional
Probab=29.17 E-value=1.1e+03 Score=28.48 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=6.6
Q ss_pred chHHHHHHHHHHHH
Q 002577 634 SSNARKKQLVQMAV 647 (906)
Q Consensus 634 ~~~~rqk~~l~~~~ 647 (906)
+...+++.+|+-++
T Consensus 432 SgGe~~Ri~LA~~~ 445 (553)
T PRK10869 432 SGGELSRIALAIQV 445 (553)
T ss_pred CHHHHHHHHHHHHH
Confidence 34445555554443
No 343
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=28.82 E-value=1.3e+03 Score=29.20 Aligned_cols=8 Identities=13% Similarity=0.264 Sum_probs=4.1
Q ss_pred CCCCCCCC
Q 002577 194 SGHVPYRD 201 (906)
Q Consensus 194 ~~~ipyRd 201 (906)
..+||...
T Consensus 352 G~~Vpa~~ 359 (771)
T TIGR01069 352 GIPIPANE 359 (771)
T ss_pred CCCccCCc
Confidence 33666544
No 344
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=28.46 E-value=5.6e+02 Score=30.60 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=13.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHH
Q 002577 261 AMIKDLYSEIDRLKQEVYAAR 281 (906)
Q Consensus 261 ~~ik~l~~Ei~~Lk~el~~~r 281 (906)
.-+..+..+|..++.++..++
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~ 91 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLE 91 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777666555
No 345
>PHA03332 membrane glycoprotein; Provisional
Probab=28.44 E-value=1.4e+03 Score=29.56 Aligned_cols=126 Identities=9% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002577 368 ATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATS 447 (906)
Q Consensus 368 ~~l~eke~~i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L~~klerk~~~~~~n~~~~~~~~~eL~~~~~~l~~~i~~~ 447 (906)
..+-+--.-+..+..+.......+..+...+.++-.-|..+-.+++ .--......+.++..++...+......+.++
T Consensus 884 ~~llqnaaaia~mksaIg~tNaAV~~lsDai~klGnti~kisatl~---~nI~avNgRIs~Led~VN~r~~~v~~~intL 960 (1328)
T PHA03332 884 NQLLQATAATAEMASKIGGLNARVDKTSDVITKLGDTIAKISATLD---NNIRAVNGRVSDLEDQVNLRFLAVATNFNTL 960 (1328)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---hhHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHH--HHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002577 448 VTQQEQQLKDMEEDMQSFVSTKA--EATEELRGRLGKLKAMYGSGIKALDG 496 (906)
Q Consensus 448 ~~qqe~el~~l~~~~~~~~~~~~--~~l~eL~~k~~~~~~~~~~qie~l~~ 496 (906)
.+|+........+.++....... +++..|.-++......++.|++..+.
T Consensus 961 A~ql~~~~~~~N~~ie~~~aaalyYQQlnsltnqv~~saskL~~qv~myrT 1011 (1328)
T PHA03332 961 ATQLKELGTTTNERIEEVMAAALYYQQLNSLTNQVTQSASKLGYQVGMYRT 1011 (1328)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
No 346
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=27.82 E-value=4.7e+02 Score=23.88 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 354 HALSDLEEKHRQANATIKEKDFLIAN 379 (906)
Q Consensus 354 ~~l~~le~~l~~~~~~l~eke~~i~~ 379 (906)
+.+.+-+.....+...|+.++..+..
T Consensus 19 KaVieEQ~k~~~L~e~Lk~ke~~LRk 44 (102)
T PF10205_consen 19 KAVIEEQAKNAELKEQLKEKEQALRK 44 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444555555544333
No 347
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=26.96 E-value=6.6e+02 Score=25.22 Aligned_cols=7 Identities=14% Similarity=0.354 Sum_probs=2.5
Q ss_pred HhHHHHH
Q 002577 403 SDVSNLF 409 (906)
Q Consensus 403 ~di~~L~ 409 (906)
.+++.|.
T Consensus 87 ~eie~l~ 93 (177)
T PF07798_consen 87 REIEKLR 93 (177)
T ss_pred HHHHHHH
Confidence 3333333
No 348
>PRK11281 hypothetical protein; Provisional
Probab=26.63 E-value=1.6e+03 Score=29.65 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhHHHHHHH
Q 002577 648 QDLRESASSRTSQLQKEM 665 (906)
Q Consensus 648 ~~l~~~~~~~~e~leee~ 665 (906)
++|..-.+.+++.|++..
T Consensus 438 ~Ql~~~~~~l~~~L~~~l 455 (1113)
T PRK11281 438 QQLLSVSDSLQSTLTQQI 455 (1113)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 444455555555555443
No 349
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=26.58 E-value=4.1e+02 Score=26.67 Aligned_cols=36 Identities=22% Similarity=0.428 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002577 429 FQSQLTQQLEILHKTVATSVTQQEQQLKDMEEDMQS 464 (906)
Q Consensus 429 ~~~eL~~~~~~l~~~i~~~~~qqe~el~~l~~~~~~ 464 (906)
.+.+|......|...++....+++.++..+...++.
T Consensus 103 VqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~ 138 (171)
T PF04799_consen 103 VQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQR 138 (171)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556666655555555555555443
No 350
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=26.23 E-value=4.7e+02 Score=23.30 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002577 375 FLIANLLKSEKALVERAIELRTELENAASDVSNLFAK 411 (906)
Q Consensus 375 ~~i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L~~k 411 (906)
..+..+......+...+..+.+.+..+...+.++..+
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444433
No 351
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=26.04 E-value=4.4e+02 Score=22.86 Aligned_cols=57 Identities=23% Similarity=0.385 Sum_probs=34.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhhcCCcCCchhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 260 SAMIKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQE-----EAEKKAMAEKIERMELESESKDKQLMELQ 325 (906)
Q Consensus 260 ~~~ik~l~~Ei~~Lk~el~~~r~kn~~~~~~e~~~~~-----e~e~~~~~eki~~le~~l~~~e~~l~~L~ 325 (906)
+.+++.++.|+..++-++..+.. .|.++ ...++.+...++.+-..++.+-.+|..|.
T Consensus 16 s~vl~~LqDE~~hm~~e~~~L~~---------~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~ 77 (79)
T PF06657_consen 16 SEVLKALQDEFGHMKMEHQELQD---------EYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKLY 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788899999988888777642 22221 12233455556666556666666665553
No 352
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=25.59 E-value=4.5e+02 Score=24.24 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 305 EKIERMELESESKDKQLMELQELYN 329 (906)
Q Consensus 305 eki~~le~~l~~~e~~l~~L~~~~~ 329 (906)
+.+..++..+..+-.++..|...+.
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~ 32 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQ 32 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 353
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.35 E-value=3.3e+02 Score=27.05 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 002577 312 LESESKDKQLMELQELYNSQLLLTAELSEKLEKTEKKL--EETEHALSDLEEKHRQANATIKE 372 (906)
Q Consensus 312 ~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~l~~~e~~l--~~~~~~l~~le~~l~~~~~~l~e 372 (906)
..+..++.++.+|+..+.........|..++..+...+ .++...+..++.++..+...|..
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
No 354
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.34 E-value=1.3e+03 Score=28.26 Aligned_cols=10 Identities=40% Similarity=0.345 Sum_probs=5.3
Q ss_pred HHHHHHhcCC
Q 002577 185 RVINALVEHS 194 (906)
Q Consensus 185 ~vI~aL~~~~ 194 (906)
.|+.+++..+
T Consensus 9 ~~~~a~~~~s 18 (716)
T KOG4593|consen 9 MVLSALRSLS 18 (716)
T ss_pred HHHHHhhccC
Confidence 4556665543
No 355
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=25.29 E-value=1.1e+03 Score=27.34 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 002577 452 EQQLKDMEEDMQSFVSTKAEATEELRGRLGKLKAMY 487 (906)
Q Consensus 452 e~el~~l~~~~~~~~~~~~~~l~eL~~k~~~~~~~~ 487 (906)
+.||+..-+. +.|+...+.-+.+|+..+.++.+.+
T Consensus 281 E~EL~~V~eE-QqfL~~QedL~~DL~eDl~k~~etf 315 (424)
T PF03915_consen 281 ESELQKVCEE-QQFLKLQEDLLSDLKEDLKKASETF 315 (424)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554332 3445555666777777776665543
No 356
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=25.15 E-value=8.5e+02 Score=25.94 Aligned_cols=67 Identities=21% Similarity=0.183 Sum_probs=35.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 002577 576 VTVNFFKTLDMHASNLTKIVEEAQTVNDQKLFEFEKKFEESAAN-------EERQLLEKVAELLASSNARKKQLVQMAVQ 648 (906)
Q Consensus 576 ~~~~~~~~l~~~~~~l~~~leee~~~~~~~~~~~~~~~~e~~~~-------e~~~l~~~i~~ll~~~~~rqk~~l~~~~~ 648 (906)
.++-||..|--.+...+..+++.+ .+.+++ -=+-|++++.-|.-+.+.--+..-.+++.
T Consensus 174 Ainl~F~rlK~ele~tk~Klee~Q--------------nelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria 239 (330)
T KOG2991|consen 174 AINLFFLRLKGELEQTKDKLEEAQ--------------NELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIA 239 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------hhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHH
Confidence 344566555555555555555553 444444 23456666666655555555555556666
Q ss_pred HHHHHHHH
Q 002577 649 DLRESASS 656 (906)
Q Consensus 649 ~l~~~~~~ 656 (906)
.|.-++..
T Consensus 240 ~Le~eLAm 247 (330)
T KOG2991|consen 240 ELEIELAM 247 (330)
T ss_pred HHHHHHHH
Confidence 66555543
No 357
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=24.92 E-value=1.1e+03 Score=27.17 Aligned_cols=16 Identities=25% Similarity=0.189 Sum_probs=10.3
Q ss_pred hhhhHHHHHHHHHHHh
Q 002577 176 INKSLLTLGRVINALV 191 (906)
Q Consensus 176 iN~SL~~L~~vI~aL~ 191 (906)
|=+|=..+.+||..|.
T Consensus 75 il~S~~v~~~Vi~~l~ 90 (444)
T TIGR03017 75 IINSDRVAKKVVDKLK 90 (444)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3346667777777764
No 358
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=24.81 E-value=1.2e+03 Score=27.52 Aligned_cols=22 Identities=9% Similarity=0.074 Sum_probs=11.1
Q ss_pred HHhhhhhhhhhhccchhhhhhh
Q 002577 789 DACANLNSMIVPCCGDLRELKG 810 (906)
Q Consensus 789 ~~~t~~~~~~~~~~e~l~~le~ 810 (906)
..+..+-+....|..+...|.+
T Consensus 391 klG~~L~~a~~~y~~A~~~L~~ 412 (475)
T PRK10361 391 AIGQSLDKAQDNYRQAMKKLSS 412 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455555555555554
No 359
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=24.75 E-value=1.4e+03 Score=28.40 Aligned_cols=18 Identities=28% Similarity=0.697 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002577 264 KDLYSEIDRLKQEVYAAR 281 (906)
Q Consensus 264 k~l~~Ei~~Lk~el~~~r 281 (906)
..|+.++..|+.++..++
T Consensus 432 ~~Le~elekLk~eilKAk 449 (762)
T PLN03229 432 RELEGEVEKLKEQILKAK 449 (762)
T ss_pred ccHHHHHHHHHHHHHhcc
Confidence 467888888888888775
No 360
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=24.52 E-value=1.5e+03 Score=28.61 Aligned_cols=16 Identities=31% Similarity=0.293 Sum_probs=9.0
Q ss_pred CCCCCChHHHHHHHHH
Q 002577 225 SPSIHCLEETLSTLDY 240 (906)
Q Consensus 225 sp~~~~~~eTlsTL~f 240 (906)
.|+...-.-++.|+-.
T Consensus 334 GpN~gGKTt~lktigl 349 (782)
T PRK00409 334 GPNTGGKTVTLKTLGL 349 (782)
T ss_pred CCCCCCcHHHHHHHHH
Confidence 5666555555555543
No 361
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=24.40 E-value=5.2e+02 Score=23.17 Aligned_cols=51 Identities=24% Similarity=0.246 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002577 359 LEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLF 409 (906)
Q Consensus 359 le~~l~~~~~~l~eke~~i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L~ 409 (906)
+++.+..+.....+.+...-+..+..+.+......|...+......+..|.
T Consensus 29 lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~ 79 (96)
T PF08647_consen 29 LEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLK 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444444444444444444555555555555555555544433333333
No 362
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=24.05 E-value=1.4e+03 Score=28.12 Aligned_cols=78 Identities=18% Similarity=0.085 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002577 376 LIANLLKSEKALVERAIELRTELENAASDVSNLFAKIERKDKIEEGNR----ILIQMFQSQLTQQLEILHKTVATSVTQQ 451 (906)
Q Consensus 376 ~i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L~~klerk~~~~~~n~----~~~~~~~~eL~~~~~~l~~~i~~~~~qq 451 (906)
++..+..+...|..+-..|+.+++-+.-++..|..-|-=......+.- .+-..|...+..++..+.+.+..+.-|+
T Consensus 243 Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQL 322 (739)
T PF07111_consen 243 EREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQL 322 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666666666667777777776666666665432222211111 1124577778888888888888887776
Q ss_pred HH
Q 002577 452 EQ 453 (906)
Q Consensus 452 e~ 453 (906)
..
T Consensus 323 ka 324 (739)
T PF07111_consen 323 KA 324 (739)
T ss_pred hH
Confidence 33
No 363
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=23.89 E-value=7.9e+02 Score=25.12 Aligned_cols=14 Identities=14% Similarity=0.301 Sum_probs=7.4
Q ss_pred HHHhccCccccccc
Q 002577 241 AHRAKNIKNKPEIN 254 (906)
Q Consensus 241 a~rak~i~n~p~~n 254 (906)
-.-.+.|.-.|+..
T Consensus 18 mevfk~vPQ~PHF~ 31 (190)
T PF05266_consen 18 MEVFKKVPQSPHFS 31 (190)
T ss_pred HHHHHcCCCCCCCh
Confidence 33345666666543
No 364
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.48 E-value=1.2e+03 Score=26.95 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 532 SEADSLLNDLQSSLYKQEEKLTAYAQQ 558 (906)
Q Consensus 532 ~e~~~~~e~l~~~l~~~~~e~~~l~~q 558 (906)
.++--+++++.+.++.+..++-..++.
T Consensus 329 ~~~lk~~e~~~kqL~~~~kek~~~~Qd 355 (446)
T KOG4438|consen 329 LEKLKMFENLTKQLNELKKEKESRRQD 355 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456788888888888777655553
No 365
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.11 E-value=2.9e+02 Score=26.25 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=34.1
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhHHhhhHhhhhhhHHHHHHHHHHHHHHH
Q 002577 667 TMQDSTFSVKAEWSAHMNKTESHYLEDTSAVENGKKDLEVVLQNCLKQAK 716 (906)
Q Consensus 667 ~lq~~~s~~~~e~~~~~~k~E~~~~~~~~~~ee~k~~l~~~lq~~~~~~~ 716 (906)
.+|+++.+++.+++.++...+.+|...++-+ +.|....|...++..
T Consensus 38 ~~q~ELe~~K~~ld~~rqel~~HFa~sAeLl----ktl~~dYqklyqHmA 83 (138)
T COG3105 38 KLQYELEKVKAQLDEYRQELVKHFARSAELL----KTLAQDYQKLYQHMA 83 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3677777799999999998988886655544 777777777666554
No 366
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=22.98 E-value=1.2e+03 Score=26.87 Aligned_cols=7 Identities=0% Similarity=-0.021 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 002577 621 ERQLLEK 627 (906)
Q Consensus 621 ~~~l~~~ 627 (906)
++.++..
T Consensus 480 L~~yid~ 486 (502)
T KOG0982|consen 480 LKFYIDF 486 (502)
T ss_pred HHHHHhH
Confidence 3444443
No 367
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=22.79 E-value=1.6e+03 Score=28.29 Aligned_cols=140 Identities=21% Similarity=0.237 Sum_probs=78.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 262 MIKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELSEK 341 (906)
Q Consensus 262 ~ik~l~~Ei~~Lk~el~~~r~kn~~~~~~e~~~~~e~e~~~~~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~~~ 341 (906)
-|.+-..|+..||.+|.....++..+ .++...+.. ++.+=+.++....+..++.|.+.- .....++++.
T Consensus 18 gwekae~e~~~lk~~l~~~~~~~~~~--e~r~~hld~---aLkec~~qlr~~ree~eq~i~~~~------~~~s~e~e~~ 86 (769)
T PF05911_consen 18 GWEKAEAEAASLKQQLEAATQQKLAL--EDRVSHLDG---ALKECMRQLRQVREEQEQKIHEAV------AKKSKEWEKI 86 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHH--HHHhhhhhH---HHHHHHHHHHHhhHHHHHHHHHHH------HHHhHHHHHH
Confidence 36778889999999998877665221 111111111 111222222222222233222211 1222344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002577 342 LEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKALVERAIELRTELENAASDVSNLFAKI 412 (906)
Q Consensus 342 l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l~~~e~~l~~~~~~L~~~l~~~~~di~~L~~kl 412 (906)
...++.++.++.+.+..+......+...|.+++..|..+.............|...|+....++..|.-++
T Consensus 87 ~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~ 157 (769)
T PF05911_consen 87 KSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYEL 157 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666677777777777777666666666777777777777766666553
No 368
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=22.62 E-value=4.9e+02 Score=30.86 Aligned_cols=97 Identities=16% Similarity=0.082 Sum_probs=60.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHhHhHHH
Q 002577 397 ELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSVTQQ------EQQLKDMEEDMQSFVSTKA 470 (906)
Q Consensus 397 ~l~~~~~di~~L~~klerk~~~~~~n~~~~~~~~~eL~~~~~~l~~~i~~~~~qq------e~el~~l~~~~~~~~~~~~ 470 (906)
.|+-+..|...|...++|+..++.+.+...-.+..+|....++|...+.-..-+. ...+..-...+++.-....
T Consensus 55 ELElLrEDNEQl~tqYErEkalR~q~eqKfie~eD~Le~~~kel~~k~e~~e~~~r~Lelkakn~td~asrleEre~e~k 134 (832)
T KOG2077|consen 55 ELELLREDNEQLITQYEREKALRTQLEQKFIEGEDQLESTAKELIRKEEPIELGIRPLELKAKNLTDDASRLEEREGEEK 134 (832)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhhhcchHHHHHhhHHHHHhhhcchhheeeeeccccccccchhhhhcccchHHH
Confidence 3444556777788888888888888888777777778777777765554433222 0011111122222222233
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHH
Q 002577 471 EATEELRGRLGKLKAMYGSGIKA 493 (906)
Q Consensus 471 ~~l~eL~~k~~~~~~~~~~qie~ 493 (906)
-...+|-++|..+...+.+|++-
T Consensus 135 ~ef~~LhqR~tem~rthv~h~er 157 (832)
T KOG2077|consen 135 WEFQELHQRHTEMPRTHVSHKER 157 (832)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHH
Confidence 45678888888888888888876
No 369
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=22.44 E-value=7e+02 Score=23.94 Aligned_cols=107 Identities=18% Similarity=0.298 Sum_probs=50.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhhcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 260 SAMIKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLQEEAEKKAMAEKIERMELESESKDKQLMELQELYNSQLLLTAELS 339 (906)
Q Consensus 260 ~~~ik~l~~Ei~~Lk~el~~~r~kn~~~~~~e~~~~~e~e~~~~~eki~~le~~l~~~e~~l~~L~~~~~~~~~~~~eL~ 339 (906)
..+|-++-.-+..+|.-+..+..-...|.|.. ... ++ ..-+.+| +.+.+|...|........
T Consensus 11 eali~~lFa~VSalKaAY~qLQ~Ah~PyDpd~-I~a--AD----~~vVsEL--------~~Ls~LK~~y~~~~~~~~--- 72 (131)
T PF04859_consen 11 EALIAKLFATVSALKAAYAQLQQAHSPYDPDK-IQA--AD----EAVVSEL--------RRLSELKRRYRKKQSDPS--- 72 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHH--HH----HHHHHHH--------HHHHHHHHHHHcCCCCCC---
Confidence 45677777778888877777766555554322 110 00 0111112 123444444432211110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 340 EKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSE 384 (906)
Q Consensus 340 ~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l~~~e 384 (906)
-.-..+...+.+.+..+..++....+++..+..++.+|..|....
T Consensus 73 ~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L 117 (131)
T PF04859_consen 73 PQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKL 117 (131)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111223334444555555556666666666666666555544433
No 370
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=22.43 E-value=9e+02 Score=25.26 Aligned_cols=10 Identities=20% Similarity=0.172 Sum_probs=3.8
Q ss_pred cCCCceeeEE
Q 002577 212 LGGKTKTCII 221 (906)
Q Consensus 212 Lgg~~kt~~I 221 (906)
+++..++.|+
T Consensus 40 ~~~~~~~~i~ 49 (216)
T KOG1962|consen 40 LAPQVLKTIA 49 (216)
T ss_pred hhhHHHHHHH
Confidence 3433333333
No 371
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=21.90 E-value=1.4e+03 Score=27.23 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 002577 263 IKDLYSEIDRLKQEVYAARE 282 (906)
Q Consensus 263 ik~l~~Ei~~Lk~el~~~r~ 282 (906)
+..+..|+..++..+..++.
T Consensus 118 l~e~~~El~~l~~~l~~l~~ 137 (511)
T PF09787_consen 118 LQELDQELRRLRRQLEELQN 137 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888887743
No 372
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=21.82 E-value=9.9e+02 Score=25.48 Aligned_cols=14 Identities=7% Similarity=0.200 Sum_probs=7.2
Q ss_pred HHhHHHHHHHHHHH
Q 002577 402 ASDVSNLFAKIERK 415 (906)
Q Consensus 402 ~~di~~L~~klerk 415 (906)
..+|.+|..+|.-.
T Consensus 235 ~Gria~Le~eLAmQ 248 (330)
T KOG2991|consen 235 EGRIAELEIELAMQ 248 (330)
T ss_pred cccHHHHHHHHHHH
Confidence 34455565555433
No 373
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=21.81 E-value=1.6e+03 Score=27.99 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002577 337 ELSEKLEKTEKKLEETEHALSDL 359 (906)
Q Consensus 337 eL~~~l~~~e~~l~~~~~~l~~l 359 (906)
-+.+.+..++.++...+..+.++
T Consensus 271 fL~~qL~~l~~~L~~aE~~l~~f 293 (726)
T PRK09841 271 FLQRQLPEVRSELDQAEEKLNVY 293 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 374
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=21.77 E-value=7.9e+02 Score=24.35 Aligned_cols=52 Identities=21% Similarity=0.196 Sum_probs=28.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002577 397 ELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTVATSV 448 (906)
Q Consensus 397 ~l~~~~~di~~L~~klerk~~~~~~n~~~~~~~~~eL~~~~~~l~~~i~~~~ 448 (906)
.+..+..++..|....++++..+...+.....+...+.....+|...+..+.
T Consensus 51 e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le 102 (158)
T PF09744_consen 51 ELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLE 102 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566666666666666555555554444455555555554444433
No 375
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=21.73 E-value=9e+02 Score=24.98 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHHHHHHHH
Q 002577 637 ARKKQLVQMAVQDLRESASSRTSQLQKEMSTMQDSTFSVKAEWSAH 682 (906)
Q Consensus 637 ~rqk~~l~~~~~~l~~~~~~~~e~leee~~~lq~~~s~~~~e~~~~ 682 (906)
.+...+|...=..|-..+-.....++.....++.++..+...+...
T Consensus 72 ~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l 117 (221)
T PF04012_consen 72 KQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKL 117 (221)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443333333333344444444444444443344444433
No 376
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=21.60 E-value=2.8e+02 Score=31.55 Aligned_cols=130 Identities=21% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 308 ERMELESESKDKQLM-ELQELYNSQLLLTAELSEKLEKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSEKA 386 (906)
Q Consensus 308 ~~le~~l~~~e~~l~-~L~~~~~~~~~~~~eL~~~l~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l~~~e~~ 386 (906)
.++........+++. ...+...........+.....+....+.++...+.++...+..++....+....+..+......
T Consensus 58 ~qLrE~~et~~KE~~~~eKe~kE~~~K~~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~ 137 (370)
T PF02994_consen 58 NQLREQDETPEKELKNKEKELKENIIKNLEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLEN 137 (370)
T ss_dssp ------------------------------------------------------------H-------------------
T ss_pred HHHHHhhhhhhhhhhhhhhhhhHhhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 387 LVERAIELRTELENAASDVSNLFAKIERKDKIEEGNRILIQMFQSQLTQQLEILHKTV 444 (906)
Q Consensus 387 l~~~~~~L~~~l~~~~~di~~L~~klerk~~~~~~n~~~~~~~~~eL~~~~~~l~~~i 444 (906)
+. ..+.+.+.++...|++|.+.++.-........+.... +.+.+.+++++.
T Consensus 138 ~~---~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~----l~~kl~DlEnrs 188 (370)
T PF02994_consen 138 ID---ESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKK----LEDKLDDLENRS 188 (370)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHhhc
No 377
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.55 E-value=1.4e+03 Score=27.19 Aligned_cols=14 Identities=21% Similarity=0.169 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 002577 472 ATEELRGRLGKLKA 485 (906)
Q Consensus 472 ~l~eL~~k~~~~~~ 485 (906)
.++.++.+..+.+.
T Consensus 677 ~iET~~~~~~KQ~~ 690 (741)
T KOG4460|consen 677 AIETVTMKKDKQQQ 690 (741)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444544444333
No 378
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.08 E-value=1.1e+03 Score=27.58 Aligned_cols=27 Identities=37% Similarity=0.361 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002577 387 LVERAIELRTELENAASDVSNLFAKIE 413 (906)
Q Consensus 387 l~~~~~~L~~~l~~~~~di~~L~~kle 413 (906)
|..+...++..+..+..+...|.++.+
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~ 90 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENE 90 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555545444444444
No 379
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.90 E-value=3.7e+02 Score=20.63 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 315 ESKDKQLMELQELYNSQLLLTAELSEKL 342 (906)
Q Consensus 315 ~~~e~~l~~L~~~~~~~~~~~~eL~~~l 342 (906)
..+....+.|...++.....+..|..++
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev 35 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEV 35 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333333333333
No 380
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=20.88 E-value=9.1e+02 Score=24.70 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 343 EKTEKKLEETEHALSDLEEKHRQANATIKEKDFLIANLLKSE 384 (906)
Q Consensus 343 ~~~e~~l~~~~~~l~~le~~l~~~~~~l~eke~~i~~l~~~e 384 (906)
.+++..+..+...+.+++.....+.......+..|..+....
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~ 168 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEA 168 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444433
No 381
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.87 E-value=1.7e+03 Score=27.73 Aligned_cols=36 Identities=8% Similarity=0.170 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002577 391 AIELRTELENAASDVSNLFAKIERKDKIEEGNRILI 426 (906)
Q Consensus 391 ~~~L~~~l~~~~~di~~L~~klerk~~~~~~n~~~~ 426 (906)
+..+............++...+++-..+-.+.+..|
T Consensus 707 ~~vler~~~~~~~e~~~~k~~lkrA~~~~~k~~si~ 742 (1104)
T COG4913 707 QKVLERQYQQEVTECAGLKKDLKRAAMLSRKVHSIA 742 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333444444444445555555555555555555554
No 382
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=20.07 E-value=6.8e+02 Score=22.90 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002577 306 KIERMELESESKDKQLMELQELYNSQ--LLLTAELSEKLEKTEKKLEETEHALSDL 359 (906)
Q Consensus 306 ki~~le~~l~~~e~~l~~L~~~~~~~--~~~~~eL~~~l~~~e~~l~~~~~~l~~l 359 (906)
.+..+...+...+..+..++..++.. .....+|.-.+.++++++..+...+..+
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33334444444445555555554443 3333444444555555555444444443
Done!