BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002578
(906 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain
Length = 323
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 138/305 (45%), Gaps = 69/305 (22%)
Query: 337 VVYPKDDPDAVL-ISERDVKLLEPDTFINDTIIDFYIKYLNNKIQTDRQQDXXXXXXX-- 393
+VYP L ++ D++ LE F+ND IIDFY+KYL + +D +
Sbjct: 22 IVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFF 81
Query: 394 ---XXRKLADLDKDPSSACEGRAAFQRVRKWTRKVNLFEKDYIFIPVNYSLHWSLIVICH 450
RK +L +D + + +RVR WTR +N+F KDYIF+PVN S HW L VIC
Sbjct: 82 YKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICF 141
Query: 451 PG-EVPYFRD------------------DEIEKSLKV----------------------- 468
P E + D I+ L+
Sbjct: 142 PWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKK 201
Query: 469 ----PCILHMDSIKGSHRGLKNLIQG---YLSEEWKERHSNTDDEVPSKFLRLQFAPLEL 521
PCIL +DS+K + ++N +Q YL EW E T + SK + P ++
Sbjct: 202 MCKRPCILILDSLKAA--SVQNTVQNLREYLEVEW-EVKLKTHRQF-SKTNMVDLCP-KV 256
Query: 522 PQQQNSFDCGLFLLHYVELFLKEALSNFN-PLKKKQVSNFLNRNWFPPAEVSMKRAQIKK 580
P+Q NS DCG++LL YVE F K+ + NF P+ ++ WFP + KR I++
Sbjct: 257 PKQDNSSDCGVYLLQYVESFFKDPIVNFELPIHLEK--------WFPRHVIKTKREDIRE 308
Query: 581 LLYEI 585
L+ ++
Sbjct: 309 LILKL 313
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1
pdb|1TH0|A Chain A, Structure Of Human Senp2
pdb|1TH0|B Chain B, Structure Of Human Senp2
Length = 226
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 107/221 (48%), Gaps = 37/221 (16%)
Query: 349 ISERDVKLLEPDTFINDTIIDFYIKYLNNKIQTDRQQDXXXXXXXXXRKLADLDKDPSSA 408
I+ D++ L+ ++ND +I+FY+ L ++ +++Q L
Sbjct: 34 ITRGDIQTLKNYHWLNDEVINFYMNLL---VERNKKQGYPALHVFSTFFYPKLKS----- 85
Query: 409 CEGRAAFQRVRKWTRKVNLFEKDYIFIPVNYSLHWSLIVICHPGEVPYFRDDEIEKSLKV 468
+Q V++WT+ VNLFE++ I +P++ +HWSL+VI L+
Sbjct: 86 ----GGYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVI----------------DLRK 125
Query: 469 PCILHMDSI-KGSHRGLKNLIQGYLSEEWKERHSNTDDEVPSKFLRLQFAPLELPQQQNS 527
C+ ++DS+ + HR + L+Q YL +E K + N+D + ++ P E+PQQ N
Sbjct: 126 KCLKYLDSMGQKGHRICEILLQ-YLQDESKTK-RNSDLNL-LEWTHHSMKPHEIPQQLNG 182
Query: 528 FDCGLFLLHYVELFLKEALSNFN----PL-KKKQVSNFLNR 563
DCG+F Y + ++ F PL +KK V L++
Sbjct: 183 SDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQ 223
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2
pdb|2IO1|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|C Chain C, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|E Chain E, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO2|A Chain A, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
pdb|2IO3|A Chain A, Crystal Structure Of Human Senp2 In Complex With Rangap1-
Sumo-2
Length = 232
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 37/221 (16%)
Query: 349 ISERDVKLLEPDTFINDTIIDFYIKYLNNKIQTDRQQDXXXXXXXXXRKLADLDKDPSSA 408
I+ D++ L+ ++ND +I+FY+ L ++ +++Q L
Sbjct: 40 ITRGDIQTLKNYHWLNDEVINFYMNLL---VERNKKQGYPALHVFSTFFYPKLKS----- 91
Query: 409 CEGRAAFQRVRKWTRKVNLFEKDYIFIPVNYSLHWSLIVICHPGEVPYFRDDEIEKSLKV 468
+Q V++WT+ VNLFE++ I +P++ +HWSL+VI L+
Sbjct: 92 ----GGYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVI----------------DLRK 131
Query: 469 PCILHMDSI-KGSHRGLKNLIQGYLSEEWKERHSNTDDEVPSKFLRLQFAPLELPQQQNS 527
C+ ++DS+ + HR + L+Q YL +E K + N+D + ++ P E+PQQ N
Sbjct: 132 KCLKYLDSMGQKGHRICEILLQ-YLQDESKTK-RNSDLNL-LEWTHHSMKPHEIPQQLNG 188
Query: 528 FDCGLFLLHYVELFLKEALSNFN----PL-KKKQVSNFLNR 563
D G+F Y + ++ F PL +KK V L++
Sbjct: 189 SDSGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQ 229
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
Length = 238
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 42/238 (17%)
Query: 338 VYPKDDPDAVL-------ISERDVKLLEPDTFINDTIIDFYIKYLNNKIQTDRQQDXXXX 390
V+ + D VL I+ +D++ L ++ND II+FY+ L + +
Sbjct: 28 VFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAF 87
Query: 391 XXXXXRKLADLDKDPSSACEGRAAFQRVRKWTRKVNLFEKDYIFIPVNYSLHWSLIVICH 450
KL A +Q V++WT+KV++F D + +P++ +HW L V+
Sbjct: 88 NTFFFTKLKT------------AGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVV-- 133
Query: 451 PGEVPYFRDDEIEKSLKVPCILHMDSIKGSHRGLKNLIQGYLSEEWKERHSNTDDEVPSK 510
+ I + DS+ G + ++ YL +E ++ D +
Sbjct: 134 --------------DFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQ 179
Query: 511 FLRLQFAPLELPQQQNSFDCGLFLLHYVELFLKEALSNFNP-----LKKKQVSNFLNR 563
+ E+PQQ N DCG+F Y + K+ NF +K+ V L+R
Sbjct: 180 LFSKK--SQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHR 235
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
Length = 230
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 42/238 (17%)
Query: 338 VYPKDDPDAVL-------ISERDVKLLEPDTFINDTIIDFYIKYLNNKIQTDRQQDXXXX 390
V+ + D VL I+ +D++ L ++ND II+FY+ L + +
Sbjct: 20 VFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAF 79
Query: 391 XXXXXRKLADLDKDPSSACEGRAAFQRVRKWTRKVNLFEKDYIFIPVNYSLHWSLIVICH 450
KL A +Q V++WT+KV++F D + +P++ +HW L V+
Sbjct: 80 NTFFFTKLKT------------AGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVV-- 125
Query: 451 PGEVPYFRDDEIEKSLKVPCILHMDSIKGSHRGLKNLIQGYLSEEWKERHSNTDDEVPSK 510
+ I + DS+ G + ++ YL +E ++ D +
Sbjct: 126 --------------DFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQ 171
Query: 511 FLRLQFAPLELPQQQNSFDCGLFLLHYVELFLKEALSNFNP-----LKKKQVSNFLNR 563
+ E+PQQ N DCG+F Y + K+ NF +K+ V L+R
Sbjct: 172 LFSKK--SQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHR 227
>pdb|2IYC|A Chain A, Senp1 Native Structure
pdb|2IYC|B Chain B, Senp1 Native Structure
pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
Length = 226
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 42/238 (17%)
Query: 338 VYPKDDPDAVL-------ISERDVKLLEPDTFINDTIIDFYIKYLNNKIQTDRQQDXXXX 390
V+ + D VL I+ +D++ L ++ND II+FY+ L + +
Sbjct: 16 VFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAF 75
Query: 391 XXXXXRKLADLDKDPSSACEGRAAFQRVRKWTRKVNLFEKDYIFIPVNYSLHWSLIVICH 450
KL A +Q V++WT+KV++F D + +P++ +HW L V+
Sbjct: 76 NTFFFTKLKT------------AGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVV-- 121
Query: 451 PGEVPYFRDDEIEKSLKVPCILHMDSIKGSHRGLKNLIQGYLSEEWKERHSNTDDEVPSK 510
+ I + DS+ G + ++ YL +E ++ D +
Sbjct: 122 --------------DFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQ 167
Query: 511 FLRLQFAPLELPQQQNSFDCGLFLLHYVELFLKEALSNFNP-----LKKKQVSNFLNR 563
+ E+PQQ N DCG+F Y + K+ NF +K+ V L+R
Sbjct: 168 LFSKK--SQEIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHR 223
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKH|A Chain A, Senp1-sumo2 Complex
Length = 225
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 98/238 (41%), Gaps = 43/238 (18%)
Query: 338 VYPKDDPDAVL-------ISERDVKLLEPDTFINDTIIDFYIKYLNNKIQTDRQQDXXXX 390
V+ + D VL I+ +D++ L ++ND II+FY+ L + +
Sbjct: 16 VFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAF 75
Query: 391 XXXXXRKLADLDKDPSSACEGRAAFQRVRKWTRKVNLFEKDYIFIPVNYSLHWSLIVICH 450
KL A +Q V++WT+KV++F D + +P++ +HW L V+
Sbjct: 76 NTFFFTKLKT------------AGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVV-- 121
Query: 451 PGEVPYFRDDEIEKSLKVPCILHMDSIKGSHRGLKNLIQGYLSEEWKERHSNTDDEVPSK 510
+ I + DS+ G + ++ YL +E ++ E +
Sbjct: 122 --------------DFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRK---EFDTN 164
Query: 511 FLRLQFAPLELPQQQNSFDCGLFLLHYVELFLKEALSNFNP-----LKKKQVSNFLNR 563
+L ++PQQ N DCG+F Y + K+ NF +K+ V L+R
Sbjct: 165 GWQLFSKKSQIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHR 222
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
Length = 226
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 96/238 (40%), Gaps = 42/238 (17%)
Query: 338 VYPKDDPDAVL-------ISERDVKLLEPDTFINDTIIDFYIKYLNNKIQTDRQQDXXXX 390
V+ + D VL I+ +D++ L ++ND II+FY+ L + +
Sbjct: 16 VFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAF 75
Query: 391 XXXXXRKLADLDKDPSSACEGRAAFQRVRKWTRKVNLFEKDYIFIPVNYSLHWSLIVICH 450
KL A +Q V++WT+KV++F D + +P++ +HW L V+
Sbjct: 76 NTFFFTKLKT------------AGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVV-- 121
Query: 451 PGEVPYFRDDEIEKSLKVPCILHMDSIKGSHRGLKNLIQGYLSEEWKERHSNTDDEVPSK 510
+ I + DS+ G + ++ YL +E ++ D +
Sbjct: 122 --------------DFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQ 167
Query: 511 FLRLQFAPLELPQQQNSFDCGLFLLHYVELFLKEALSNFNP-----LKKKQVSNFLNR 563
+ E+PQQ N D G+F Y + K+ NF +K+ V L+R
Sbjct: 168 LFSKK--SQEIPQQMNGSDAGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHR 223
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
Length = 205
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 90/220 (40%), Gaps = 35/220 (15%)
Query: 349 ISERDVKLLEPDTFINDTIIDFYIKYLNNKIQTDRQQDXXXXXXXXXRKLADLDKDPSSA 408
I+ +D++ L ++ND II+FY+ L + + KL
Sbjct: 13 ITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLKT-------- 64
Query: 409 CEGRAAFQRVRKWTRKVNLFEKDYIFIPVNYSLHWSLIVICHPGEVPYFRDDEIEKSLKV 468
A +Q V++WT+KV++F D + +P++ +HW L V+ +
Sbjct: 65 ----AGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVV----------------DFRK 104
Query: 469 PCILHMDSIKGSHRGLKNLIQGYLSEEWKERHSNTDDEVPSKFLRLQFAPLELPQQQNSF 528
I + DS+ G + ++ YL +E ++ D + + E+PQQ N
Sbjct: 105 KNITYYDSMGGINNEACRILLQYLKQESIDKKRKEFDTNGWQLFSKK--SQEIPQQMNGS 162
Query: 529 DCGLFLLHYVELFLKEALSNFNP-----LKKKQVSNFLNR 563
D G+F Y + K+ NF +K+ V L+R
Sbjct: 163 DSGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHR 202
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 221
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 50/197 (25%)
Query: 345 DAVLISERDVKLLEPDTFINDTIIDFYIKYLNNKIQTDRQQDXXXXXXXXXRKLADLDKD 404
D + I+ RD K L P ++NDTII+F++KY+ + R
Sbjct: 31 DNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTPNTVAFNSFFYTNLSER-------- 82
Query: 405 PSSACEGRAAFQRVRKWTR--KVNLFEKDYIFIPVNYSL-HWSLIVICHPGEVPYFRDDE 461
+Q VR+W + K + + D IF P+N + HW+L +I
Sbjct: 83 ---------GYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGII------------- 120
Query: 462 IEKSLKVPCILHMDSIKGSHRGLKNLI----QGYLSEEWKERHSNTDDEVPSKFLRLQFA 517
LK I ++DS+ + I Q Y+ EE +H+ +D
Sbjct: 121 ---DLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEE--SKHTIGED--------FDLI 167
Query: 518 PLELPQQQNSFDCGLFL 534
L+ PQQ N +DCG+++
Sbjct: 168 HLDCPQQPNGYDCGIYV 184
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfenic Acid
pdb|2HL8|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfinic Acid
pdb|2HL9|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfonic Acid
Length = 221
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 50/197 (25%)
Query: 345 DAVLISERDVKLLEPDTFINDTIIDFYIKYLNNKIQTDRQQDXXXXXXXXXRKLADLDKD 404
D + I+ RD K L P ++NDTII+F++KY+ + R
Sbjct: 31 DNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTPNTVAFNSFFYTNLSER-------- 82
Query: 405 PSSACEGRAAFQRVRKWTR--KVNLFEKDYIFIPVNYSL-HWSLIVICHPGEVPYFRDDE 461
+Q VR+W + K + + D IF P+N + HW+L +I
Sbjct: 83 ---------GYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGII------------- 120
Query: 462 IEKSLKVPCILHMDSIKGSHRGLKNLI----QGYLSEEWKERHSNTDDEVPSKFLRLQFA 517
LK I ++DS+ + I Q Y+ EE +H+ +D
Sbjct: 121 ---DLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEE--SKHTIGED--------FDLI 167
Query: 518 PLELPQQQNSFDCGLFL 534
L+ PQQ N +D G+++
Sbjct: 168 HLDCPQQPNGYDXGIYV 184
>pdb|2BKQ|A Chain A, Nedd8 Protease
pdb|2BKQ|B Chain B, Nedd8 Protease
pdb|2BKQ|C Chain C, Nedd8 Protease
pdb|2BKQ|D Chain D, Nedd8 Protease
pdb|2BKR|A Chain A, Nedd8 Nedp1 Complex
Length = 212
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 96/247 (38%), Gaps = 54/247 (21%)
Query: 348 LISERDVKLLEPDTFINDTIIDFYIKYLNNKIQTDRQQDXXXXXXXXXRKLADLDKDPSS 407
L+ + DV LL+P +++ND II F +Y N Q D + +P+
Sbjct: 12 LLRQSDVSLLDPPSWLNDHIIGFAFEYFANS-QFHDSSDHVSFISPEVTQFIKCTSNPA- 69
Query: 408 ACEGRAAFQRVRKWTRKVNLFEKDYIFIPVN-------YSLHWSLIVICHPGEVPYFRDD 460
+ + ++L K +F+ +N HWSL+V Y +D
Sbjct: 70 ---------EIAMFLEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLV--------YLQDK 112
Query: 461 EIEKSLKVPCILHMDSIKGSHRGLKNLIQGYLSEEWKERHSNTDDEVPSKFLRLQFAPLE 520
H DS S+ S K+ + + K +L F +
Sbjct: 113 N--------SFFHYDSHSRSN-----------SVHAKQVAEKLEAFLGRKGDKLAFVEEK 153
Query: 521 LPQQQNSFDCGLFLLHYVELFLKEALSNFNPLKKKQVSNFLNRNWFPPAEVSMKRAQIKK 580
P QQNS+DCG++++ E + NF ++Q + L PA ++ KR + K
Sbjct: 154 APAQQNSYDCGMYVICNTEALCQ----NF---FRQQTESLLQL--LTPAYITKKRGEWKD 204
Query: 581 LLYEISK 587
L+ ++K
Sbjct: 205 LIATLAK 211
>pdb|1XT9|A Chain A, Crystal Structure Of Den1 In Complex With Nedd8
Length = 212
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 94/247 (38%), Gaps = 54/247 (21%)
Query: 348 LISERDVKLLEPDTFINDTIIDFYIKYLNNKIQTDRQQDXXXXXXXXXRKLADLDKDPSS 407
L+ + DV LL+P +++ND II F +Y N Q D + +P+
Sbjct: 12 LLRQSDVSLLDPPSWLNDHIIGFAFEYFANS-QFHDCSDHVSFISPEVTQFIKCTSNPA- 69
Query: 408 ACEGRAAFQRVRKWTRKVNLFEKDYIFIPVN-------YSLHWSLIVICHPGEVPYFRDD 460
+ + ++L K +F+ +N HWSL+V Y +D
Sbjct: 70 ---------EIAMFLEPLDLPNKRVVFLAINDNSNQAAGGTHWSLLV--------YLQDK 112
Query: 461 EIEKSLKVPCILHMDSIKGSHRGLKNLIQGYLSEEWKERHSNTDDEVPSKFLRLQFAPLE 520
H DS S+ S K+ + + K +L F +
Sbjct: 113 N--------SFFHYDSHSRSN-----------SVHAKQVAEKLEAFLGRKGDKLAFVEEK 153
Query: 521 LPQQQNSFDCGLFLLHYVELFLKEALSNFNPLKKKQVSNFLNRNWFPPAEVSMKRAQIKK 580
P QQNS+DCG++++ E + ++Q + L PA ++ KR + K
Sbjct: 154 APAQQNSYDCGMYVICNTEALCQNFF-------RQQTESLLQL--LTPAYITKKRGEWKD 204
Query: 581 LLYEISK 587
L+ ++K
Sbjct: 205 LITTLAK 211
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 70/151 (46%), Gaps = 25/151 (16%)
Query: 539 ELFLKEALSNFNPLKKKQVSNFL----------NRNWFPPAEVSMKRAQIKKLLYEISKD 588
E L A+++ +P K+KQV+ L N+++ P V+ +RA + E+
Sbjct: 212 ETALHCAVASLHP-KRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHND--VMEVLHK 268
Query: 589 HSRRKDPSADSVDE---HPSSQPTNDKIGKETGAVILGQMWNPTLPGQQGFSSISDAEKG 645
H + + + DS+ + H ++ + +T ++L +P++ QGF++ +
Sbjct: 269 HGAKMN-ALDSLGQTALHRAALAGH----LQTCRLLLSYGSDPSIISLQGFTAAQMGNEA 323
Query: 646 IQISISGASPQRDAQCTRDPEFSFKEQCKLG 676
+Q +S ++P R T D ++ E K G
Sbjct: 324 VQQILSESTPMR----TSDVDYRLLEASKAG 350
>pdb|3M9W|A Chain A, Open Ligand-Free Crystal Structure Of Xylose Binding
Protein From Escherichia Coli
pdb|3M9X|A Chain A, Open Liganded Crystal Structure Of Xylose Binding Protein
From Escherichia Coli
pdb|3MA0|A Chain A, Closed Liganded Crystal Structure Of Xylose Binding
Protein From Escherichia Coli
pdb|3MA0|B Chain B, Closed Liganded Crystal Structure Of Xylose Binding
Protein From Escherichia Coli
pdb|3MA0|C Chain C, Closed Liganded Crystal Structure Of Xylose Binding
Protein From Escherichia Coli
Length = 313
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 354 VKLLEPDTFINDTIIDFYIKYLNNKI 379
+K+L D IND IDFYI + N K+
Sbjct: 84 IKVLAYDRMINDADIDFYISFDNEKV 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,656,951
Number of Sequences: 62578
Number of extensions: 1134892
Number of successful extensions: 1891
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1853
Number of HSP's gapped (non-prelim): 20
length of query: 906
length of database: 14,973,337
effective HSP length: 108
effective length of query: 798
effective length of database: 8,214,913
effective search space: 6555500574
effective search space used: 6555500574
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)