Query 002578
Match_columns 906
No_of_seqs 223 out of 1104
Neff 4.4
Searched_HMMs 29240
Date Tue Mar 26 16:37:28 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002578.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1295-1299//hhsearch_pdb/002578hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eay_A Sentrin-specific protea 1.0 1 1 388.7 21.6 247 335-591 20-319 (323)
2 2xph_A Sentrin-specific protea 1.0 1 1 315.7 21.5 194 344-584 41-234 (238)
3 1th0_A SMT3-, sentrin-specific 1.0 1 1 309.1 21.1 193 345-584 30-222 (226)
4 2bkr_A Sentrin-specific protea 1.0 1 1 296.6 19.2 193 345-587 9-211 (212)
5 1euv_A ULP1 protease; SUMO hyd 1.0 1 1 292.1 18.1 181 344-584 30-217 (221)
6 2oix_A Xanthomonas outer prote 1.0 1 1 255.7 14.2 176 359-585 1-181 (186)
7 4ekf_A Adenain; alpha and beta 1.0 1 1 24.0 14.0 126 440-590 52-182 (204)
8 2oy9_A UPF0223 protein BH2638; 1.0 1 1 13.3 -4.9 12 359-370 10-21 (98)
9 2fc6_A Nuclear, target of EGR1 1.0 1 1 12.1 0.5 16 837-852 31-46 (50)
10 1t4w_A CEP-1, C.elegans P53 tu 1.0 1 1 11.9 -0.2 31 708-752 106-136 (196)
No 1
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=388.70 Aligned_cols=247 Identities=34% Similarity=0.639 Sum_probs=194.2
Q ss_pred CCCCCCCC-CCCCEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCEEEECHHHHHHHHCCCCCCC----CH
Q ss_conf 21215899-99953894412302499986479999999999995-40368899689960488998411379998----40
Q 002578 335 EDVVYPKD-DPDAVLISERDVKLLEPDTFINDTIIDFYIKYLNN-KIQTDRQQDFHFFNSFFFRKLADLDKDPS----SA 408 (906)
Q Consensus 335 e~~vYP~~-~~~~VsIt~sDL~~L~p~eWLNDtIIDFYLeyL~e-~i~~~~~~rvhiFNSFFysKL~~ldk~Ps----s~ 408 (906)
+.++||+. +.+++.|+++||.||.+++||||+|||||++||.. +.......++|+||||||.+|....+... ..
T Consensus 20 ~~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~~~ 99 (323)
T 3eay_A 20 KLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPNL 99 (323)
T ss_dssp EEEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSCHHHHHTEEECCTHHHHHHSCC--------CCS
T ss_pred EEEEECCCCCCCCEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHCCCCCCCCCCCC
T ss_conf 05772899998961877999973178887598999999999986322302368379975589999872166655556320
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCC-----------------------HH-----
Q ss_conf 12246789999654113456776699983148847999994599987655-----------------------02-----
Q 002578 409 CEGRAAFQRVRKWTRKVNLFEKDYIFIPVNYSLHWSLIVICHPGEVPYFR-----------------------DD----- 460 (906)
Q Consensus 409 ~~g~~~yqrVkrWTKkvDLFeKD~IFIPIN~~sHWSLIVId~P~~v~~f~-----------------------D~----- 460 (906)
.....+|.+|+|||+++|||++|+||||||.+.||+|+|||+|+...... |+
T Consensus 100 s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 179 (323)
T 3eay_A 100 SMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTT 179 (323)
T ss_dssp CHHHHHHTTSGGGGTTCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC-----------------------------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 06778888999898652400089899964789853899996677310112234333443322222455444346555553
Q ss_pred ------------------HHHHCCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCC
Q ss_conf ------------------34210477729998189987-50268999999999999842899999876540000025998
Q 002578 461 ------------------EIEKSLKVPCILHMDSIKGS-HRGLKNLIQGYLSEEWKERHSNTDDEVPSKFLRLQFAPLEL 521 (906)
Q Consensus 461 ------------------e~e~s~k~p~Il~LDSL~gs-n~~i~~~Ir~YL~eE~k~K~~~~~dd~sskf~~lrvv~~nV 521 (906)
......++|||+|||||++. +.++...|++||..||+.+++...+-..+.| ....+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~~~f~~~~~---~~~~~~~ 256 (323)
T 3eay_A 180 STLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTHRQFSKTNM---VDLCPKV 256 (323)
T ss_dssp --------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSCCCCCTTTS---CEECCBC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHC---EECCCCC
T ss_conf 1013445554110112344455578875999779899874469999999999999963578767787675---0036878
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8767999719999999999981674687832111122223379778467689999999999999972238
Q 002578 522 PQQQNSFDCGLFLLHYVELFLKEALSNFNPLKKKQVSNFLNRNWFPPAEVSMKRAQIKKLLYEISKDHSR 591 (906)
Q Consensus 522 PQQ~Ng~DCGIFVL~YaE~fl~~~Pi~Fsq~~i~~~s~fl~~nWFpp~eIs~kR~~IkkLIleL~k~~~~ 591 (906)
|||.|++|||+|||+||++|+.+++.+|++.. . ..+||++.+|+.||..|++||++|....+.
T Consensus 257 P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~~~------~-~~~wf~~~~i~~kR~ei~~LI~~L~~~q~~ 319 (323)
T 3eay_A 257 PKQDNSSDCGVYLLQYVESFFKDPIVNFELPI------H-LEKWFPRHVIKTKREDIRELILKLHLQQQK 319 (323)
T ss_dssp CCCCSTTCHHHHHHHHHHHHHHSCCCCCCSSC------B-CTTSSCHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC------C-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 87588775899999999999828761446653------4-456789899999999999999999998635
No 2
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=1.00 E-value=1 Score=315.73 Aligned_cols=194 Identities=28% Similarity=0.528 Sum_probs=165.0
Q ss_pred CCCEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99538944123024999864799999999999954036889968996048899841137999840122467899996541
Q 002578 344 PDAVLISERDVKLLEPDTFINDTIIDFYIKYLNNKIQTDRQQDFHFFNSFFFRKLADLDKDPSSACEGRAAFQRVRKWTR 423 (906)
Q Consensus 344 ~~~VsIt~sDL~~L~p~eWLNDtIIDFYLeyL~e~i~~~~~~rvhiFNSFFysKL~~ldk~Pss~~~g~~~yqrVkrWTK 423 (906)
..++.|+.+|+.+|.+++||||+||+||++||.++.......++|+|+||||++|.. .+|++|++|++
T Consensus 41 ~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~f~sff~~~l~~------------~~~~~v~~w~~ 108 (238)
T 2xph_A 41 AFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLKT------------AGYQAVKRWTK 108 (238)
T ss_dssp ETTEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTSTTSCCEEECCTTTTHHHHT------------TCHHHHTTTTT
T ss_pred CCCCEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHH------------CCCHHHHHHHC
T ss_conf 788277699996418988618799999999999864442788336650288887544------------15188887740
Q ss_pred CCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 13456776699983148847999994599987655023421047772999818998750268999999999999842899
Q 002578 424 KVNLFEKDYIFIPVNYSLHWSLIVICHPGEVPYFRDDEIEKSLKVPCILHMDSIKGSHRGLKNLIQGYLSEEWKERHSNT 503 (906)
Q Consensus 424 kvDLFeKD~IFIPIN~~sHWSLIVId~P~~v~~f~D~e~e~s~k~p~Il~LDSL~gsn~~i~~~Ir~YL~eE~k~K~~~~ 503 (906)
++++|++++||||||.+.||+|+||+.+. ++|+|||||++.+....+.++.||..+++.+.+..
T Consensus 109 ~~~l~~~~~i~iPin~~~HW~L~vi~~~~----------------~~i~~~DSl~~~~~~~~~~l~~~L~~e~~~k~~~~ 172 (238)
T 2xph_A 109 KVDVFSVDILLVPIHLGVHWCLAVVDFRK----------------KNITYYDSMGGINNEACRILLQYLKQESIDKKRKE 172 (238)
T ss_dssp TCCGGGSSEEEEEEEETTEEEEEEEETTT----------------TEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHCSC
T ss_pred CCCCCCCCEEEECCCCCCCEEEEEEECCC----------------CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 47802188799732589813899997466----------------36888614468877999999999999999863997
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99987654000002599887679997199999999999816746878321111222233797784676899999999999
Q 002578 504 DDEVPSKFLRLQFAPLELPQQQNSFDCGLFLLHYVELFLKEALSNFNPLKKKQVSNFLNRNWFPPAEVSMKRAQIKKLLY 583 (906)
Q Consensus 504 ~dd~sskf~~lrvv~~nVPQQ~Ng~DCGIFVL~YaE~fl~~~Pi~Fsq~~i~~~s~fl~~nWFpp~eIs~kR~~IkkLIl 583 (906)
.+. ..|........++|||.||+|||+|||+||++|+.+.|..| .+.++...|.+|..-|+
T Consensus 173 ~~~--~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~f-----------------~q~dm~~~R~~m~~eil 233 (238)
T 2xph_A 173 FDT--NGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPINF-----------------TQQHMPYFRKRMVWEIL 233 (238)
T ss_dssp CCC--TTCEEEECCSSSSCCCSBGGGHHHHHHHHHHHHHTTCCCCC-----------------CGGGHHHHHHHHHHHHH
T ss_pred CCC--CCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC-----------------CHHHHHHHHHHHHHHHH
T ss_conf 676--55444256787888889988789999999999966999775-----------------76639999999999999
Q ss_pred H
Q ss_conf 9
Q 002578 584 E 584 (906)
Q Consensus 584 e 584 (906)
+
T Consensus 234 ~ 234 (238)
T 2xph_A 234 H 234 (238)
T ss_dssp H
T ss_pred H
T ss_conf 6
No 3
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=1.00 E-value=1 Score=309.06 Aligned_cols=193 Identities=27% Similarity=0.568 Sum_probs=162.9
Q ss_pred CCEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 95389441230249998647999999999999540368899689960488998411379998401224678999965411
Q 002578 345 DAVLISERDVKLLEPDTFINDTIIDFYIKYLNNKIQTDRQQDFHFFNSFFFRKLADLDKDPSSACEGRAAFQRVRKWTRK 424 (906)
Q Consensus 345 ~~VsIt~sDL~~L~p~eWLNDtIIDFYLeyL~e~i~~~~~~rvhiFNSFFysKL~~ldk~Pss~~~g~~~yqrVkrWTKk 424 (906)
.++.|+++|+.+|.+++||||+||+||++||.++..+...+++|+|+||||.+|.. .+|++|++|+++
T Consensus 30 ~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~f~s~f~~~l~~------------~~~~~v~~w~~~ 97 (226)
T 1th0_A 30 FKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKS------------GGYQAVKRWTKG 97 (226)
T ss_dssp TTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHHTCCCEEECCTTHHHHHHH------------HTGGGTGGGGTT
T ss_pred CCEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHH------------CCCHHHHHHHHC
T ss_conf 87288799995408987358299999999999864442589589975899977643------------042888878622
Q ss_pred CCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 34567766999831488479999945999876550234210477729998189987502689999999999998428999
Q 002578 425 VNLFEKDYIFIPVNYSLHWSLIVICHPGEVPYFRDDEIEKSLKVPCILHMDSIKGSHRGLKNLIQGYLSEEWKERHSNTD 504 (906)
Q Consensus 425 vDLFeKD~IFIPIN~~sHWSLIVId~P~~v~~f~D~e~e~s~k~p~Il~LDSL~gsn~~i~~~Ir~YL~eE~k~K~~~~~ 504 (906)
+++|++++||||||.+.||+|+||+.+. ++|+|||||++.+..+.+.|+.||..+++.+.+...
T Consensus 98 ~~l~~~~~i~iPin~~~HW~l~vi~~~~----------------~~i~~~DSl~~~~~~~~~~l~~~l~~e~~~k~~~~~ 161 (226)
T 1th0_A 98 VNLFEQEIILVPIHRKVHWSLVVIDLRK----------------KCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDL 161 (226)
T ss_dssp CCGGGSSEEEEEEEETTEEEEEEEETTT----------------TEEEEECTTCCCCHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCCCEEEEEEEECCEEEEEEEECCC----------------CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 7734389899948707478889998377----------------752887288998658999999999999998539987
Q ss_pred CCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99876540000025998876799971999999999998167468783211112222337977846768999999999999
Q 002578 505 DEVPSKFLRLQFAPLELPQQQNSFDCGLFLLHYVELFLKEALSNFNPLKKKQVSNFLNRNWFPPAEVSMKRAQIKKLLYE 584 (906)
Q Consensus 505 dd~sskf~~lrvv~~nVPQQ~Ng~DCGIFVL~YaE~fl~~~Pi~Fsq~~i~~~s~fl~~nWFpp~eIs~kR~~IkkLIle 584 (906)
+ ...|....+...++|||.||+|||+|||+||++|+.+.|..| .+.++...|.+|..-|++
T Consensus 162 ~--~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~~~~~f-----------------~q~dm~~~R~~~~~ei~~ 222 (226)
T 1th0_A 162 N--LLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITF-----------------TQHQMPLFRKKMVWEILH 222 (226)
T ss_dssp C--GGGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCCCC-----------------CGGGHHHHHHHHHHHHHH
T ss_pred C--CCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC-----------------CHHHHHHHHHHHHHHHHH
T ss_conf 8--111454144677889889877789999999999967999765-----------------766299999999999986
No 4
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=1.00 E-value=1 Score=296.57 Aligned_cols=193 Identities=25% Similarity=0.436 Sum_probs=154.6
Q ss_pred CCEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEC---HHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 95389441230249998647999999999999540368899689960---488998411379998401224678999965
Q 002578 345 DAVLISERDVKLLEPDTFINDTIIDFYIKYLNNKIQTDRQQDFHFFN---SFFFRKLADLDKDPSSACEGRAAFQRVRKW 421 (906)
Q Consensus 345 ~~VsIt~sDL~~L~p~eWLNDtIIDFYLeyL~e~i~~~~~~rvhiFN---SFFysKL~~ldk~Pss~~~g~~~yqrVkrW 421 (906)
.++.|+.+|+.+|.+++||||+||+||++||.++..+....++|+|+ ||||+.+. .+++|++|
T Consensus 9 ~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~~~p~~s~f~~~~~--------------~~~~v~~~ 74 (212)
T 2bkr_A 9 MDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDSSDHVSFISPEVTQFIKCTS--------------NPAEIAMF 74 (212)
T ss_dssp TTEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGGGTTTEEEECHHHHHHHHHCC--------------CHHHHHHH
T ss_pred CCEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHCC--------------CHHHHHHH
T ss_conf 8987769999432899886888899999999986435788868999949999998489--------------99999998
Q ss_pred HHCCCCCCCCEEEEEEEC-------CCCEEEEEEECCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 411345677669998314-------8847999994599987655023421047772999818998750268999999999
Q 002578 422 TRKVNLFEKDYIFIPVNY-------SLHWSLIVICHPGEVPYFRDDEIEKSLKVPCILHMDSIKGSHRGLKNLIQGYLSE 494 (906)
Q Consensus 422 TKkvDLFeKD~IFIPIN~-------~sHWSLIVId~P~~v~~f~D~e~e~s~k~p~Il~LDSL~gsn~~i~~~Ir~YL~e 494 (906)
++++++|++++||||||. ++||+|+||+.+. ++|+|||||++.+....+.+..+|..
T Consensus 75 ~~~~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~----------------~~i~~~DSl~~~n~~~~~~l~~~l~~ 138 (212)
T 2bkr_A 75 LEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDK----------------NSFFHYDSHSRSNSVHAKQVAEKLEA 138 (212)
T ss_dssp HGGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGG----------------TEEEEECSSTTTTHHHHHHHHHHHHH
T ss_pred HCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEECC----------------CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 46125655888999976588788899872899998658----------------83999868999888999999999999
Q ss_pred HHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99984289999987654000002599887679997199999999999816746878321111222233797784676899
Q 002578 495 EWKERHSNTDDEVPSKFLRLQFAPLELPQQQNSFDCGLFLLHYVELFLKEALSNFNPLKKKQVSNFLNRNWFPPAEVSMK 574 (906)
Q Consensus 495 E~k~K~~~~~dd~sskf~~lrvv~~nVPQQ~Ng~DCGIFVL~YaE~fl~~~Pi~Fsq~~i~~~s~fl~~nWFpp~eIs~k 574 (906)
....+.. +| .+...++|||.||+|||||||+||++++.+.... .+.. ...||++.+++.+
T Consensus 139 ~l~~~~~--------~~---~~~~~~~PqQ~N~~DCGvfvl~~~~~l~~~~~~~-~~~~--------~~~~~~~~~i~~~ 198 (212)
T 2bkr_A 139 FLGRKGD--------KL---AFVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQ-QTES--------LLQLLTPAYITKK 198 (212)
T ss_dssp HHSCTTC--------CC---CEEECCCCCCSSSSTHHHHHHHHHHHHHHHHHSC-CCCC--------HHHHCCHHHHHHH
T ss_pred HHCCCCC--------CC---EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCC--------CCCCCCHHHHHHH
T ss_conf 8677455--------64---4767899988998767999999999999975225-8521--------0035799999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999997
Q 002578 575 RAQIKKLLYEISK 587 (906)
Q Consensus 575 R~~IkkLIleL~k 587 (906)
|++|+++|++|.+
T Consensus 199 R~~i~~lI~~L~~ 211 (212)
T 2bkr_A 199 RGEWKDLIATLAK 211 (212)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999713
No 5
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=1.00 E-value=1 Score=292.13 Aligned_cols=181 Identities=31% Similarity=0.540 Sum_probs=152.8
Q ss_pred CCCEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99538944123024999864799999999999954036889968996048899841137999840122467899996541
Q 002578 344 PDAVLISERDVKLLEPDTFINDTIIDFYIKYLNNKIQTDRQQDFHFFNSFFFRKLADLDKDPSSACEGRAAFQRVRKWTR 423 (906)
Q Consensus 344 ~~~VsIt~sDL~~L~p~eWLNDtIIDFYLeyL~e~i~~~~~~rvhiFNSFFysKL~~ldk~Pss~~~g~~~yqrVkrWTK 423 (906)
.+++.|+.+|+.+|.+++||||+||+||++||.+.. +++|+|+||||.+|.. .+|++|++|++
T Consensus 30 ~~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~~-----~~~~~f~s~f~~~l~~------------~~~~~v~rw~~ 92 (221)
T 1euv_A 30 RDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKST-----PNTVAFNSFFYTNLSE------------RGYQGVRRWMK 92 (221)
T ss_dssp ETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHS-----TTEEECCTHHHHHHHH------------HTGGGTTTTTG
T ss_pred CCCEEEEHHHHHHHCCCCCCCHHHHHHHHHHHHHCC-----CCEEEEECHHHHHHHH------------HCCHHHHHHHH
T ss_conf 798697799986256887789899999999987328-----9869987399887525------------23178999988
Q ss_pred --CCCCCCCCEEEEEEECC-CCEEEEEEECCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCH----HHHHHHHHHHHHHH
Q ss_conf --13456776699983148-847999994599987655023421047772999818998750----26899999999999
Q 002578 424 --KVNLFEKDYIFIPVNYS-LHWSLIVICHPGEVPYFRDDEIEKSLKVPCILHMDSIKGSHR----GLKNLIQGYLSEEW 496 (906)
Q Consensus 424 --kvDLFeKD~IFIPIN~~-sHWSLIVId~P~~v~~f~D~e~e~s~k~p~Il~LDSL~gsn~----~i~~~Ir~YL~eE~ 496 (906)
++++|++++||||||.+ .||+|+||+.+. ++|+|||||++.+. .+.+.|+.||..++
T Consensus 93 ~~~~~~~~~~~i~iPin~~~~HW~l~vi~~~~----------------~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~e~ 156 (221)
T 1euv_A 93 RKKTQIDKLDKIFTPINLNQSHWALGIIDLKK----------------KTIGYVDSLSNGPNAMSFAILTDLQKYVMEES 156 (221)
T ss_dssp GGTSCGGGCSEEEEEEEETTTEEEEEEEETTT----------------TEEEEECSSCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred HCCCCCCCCCEEEEEEECCCCEEEEEEEECCC----------------CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 52688331788999887688838899997688----------------97999836999985058999999999999998
Q ss_pred HHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 98428999998765400000259988767999719999999999981674687832111122223379778467689999
Q 002578 497 KERHSNTDDEVPSKFLRLQFAPLELPQQQNSFDCGLFLLHYVELFLKEALSNFNPLKKKQVSNFLNRNWFPPAEVSMKRA 576 (906)
Q Consensus 497 k~K~~~~~dd~sskf~~lrvv~~nVPQQ~Ng~DCGIFVL~YaE~fl~~~Pi~Fsq~~i~~~s~fl~~nWFpp~eIs~kR~ 576 (906)
+.+.+. +| ++...++|||.||+|||+|||+||++++.+.|+ +|.+.++..+|.
T Consensus 157 ~~~~~~-------~~---~~~~~~~PqQ~N~~DCGvfv~~~~~~~~~~~~l-----------------~f~~~d~~~~R~ 209 (221)
T 1euv_A 157 KHTIGE-------DF---DLIHLDCPQQPNGYDCGIYVCMNTLYGSADAPL-----------------DFDYKDAIRMRR 209 (221)
T ss_dssp TSSSCT-------TC---EEEEECCCCCSSSSTHHHHHHHHHHHHHTTCCC-----------------CCCHHHHHHHHH
T ss_pred HHHCCC-------CC---EEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCC-----------------CCCHHHHHHHHH
T ss_conf 876499-------85---482158888899868899999999999579998-----------------709899999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q 002578 577 QIKKLLYE 584 (906)
Q Consensus 577 ~IkkLIle 584 (906)
.|..+|++
T Consensus 210 ~i~~~Il~ 217 (221)
T 1euv_A 210 FIAHLILT 217 (221)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
T ss_conf 99999996
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=1.00 E-value=1 Score=255.73 Aligned_cols=176 Identities=17% Similarity=0.287 Sum_probs=130.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCC-CCEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 99864799999999999954036889-96899604889984113799984012246789999654113456776699983
Q 002578 359 PDTFINDTIIDFYIKYLNNKIQTDRQ-QDFHFFNSFFFRKLADLDKDPSSACEGRAAFQRVRKWTRKVNLFEKDYIFIPV 437 (906)
Q Consensus 359 p~eWLNDtIIDFYLeyL~e~i~~~~~-~rvhiFNSFFysKL~~ldk~Pss~~~g~~~yqrVkrWTKkvDLFeKD~IFIPI 437 (906)
+++||||+||+||++||.++..+... .++|||+|+++..+... +...+.++++|++..++ +++|||||
T Consensus 1 ~~~WLND~iI~fy~~~L~~~~~~~~~~~~v~f~~p~~~~~l~~~---------~~~~~~~~~~~~~~~~~--~~~i~iPi 69 (186)
T 2oix_A 1 ATSWLLDGHLRAYTDDLARRLRGEPNAHLLHFADSQVVTMLSSA---------DPDQQARAQRLLAGDDI--PPIVFLPI 69 (186)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTTTSTTGGGEEECCHHHHHHTTCS---------SHHHHHHHHHHHHSTTS--CSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHC---------CHHHHHHHHHHCCCCCC--CCEEEEEE
T ss_conf 99884769999999999997550157561788788999999839---------98999999987146663--57899987
Q ss_pred EC-CCCEEEEEEECCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCHH---HHHHHHHHHHHHHHHHCCCCCCCCCCCCCE
Q ss_conf 14-88479999945999876550234210477729998189987502---689999999999998428999998765400
Q 002578 438 NY-SLHWSLIVICHPGEVPYFRDDEIEKSLKVPCILHMDSIKGSHRG---LKNLIQGYLSEEWKERHSNTDDEVPSKFLR 513 (906)
Q Consensus 438 N~-~sHWSLIVId~P~~v~~f~D~e~e~s~k~p~Il~LDSL~gsn~~---i~~~Ir~YL~eE~k~K~~~~~dd~sskf~~ 513 (906)
|. ++||+|+||+.+++ ..++|+|||||++.+.. +.+.++.+|. . +..
T Consensus 70 n~~~~HWsLlvi~~~~~-------------~~~~~~~~DSl~~~~~~~~~l~~~l~~~l~--------~-------~~~- 120 (186)
T 2oix_A 70 NQPNAHWSLLVVDRRNK-------------DAVAAYHYDSMAQKDPQQRYLADMAAYHLG--------L-------DYQ- 120 (186)
T ss_dssp EETTTEEEEEEEECSST-------------TSCEEEEECCCSSCCHHHHHHHHHHHHHTT--------C-------CGG-
T ss_pred ECCCCCCEEEEEECCCC-------------EEEEEEEECCCCCCCHHHHHHHHHHHHHHC--------C-------CCC-
T ss_conf 38999637999987888-------------140368972899997799999999999968--------9-------834-
Q ss_pred ECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 000259988767999719999999999981674687832111122223379778467689999999999999
Q 002578 514 LQFAPLELPQQQNSFDCGLFLLHYVELFLKEALSNFNPLKKKQVSNFLNRNWFPPAEVSMKRAQIKKLLYEI 585 (906)
Q Consensus 514 lrvv~~nVPQQ~Ng~DCGIFVL~YaE~fl~~~Pi~Fsq~~i~~~s~fl~~nWFpp~eIs~kR~~IkkLIleL 585 (906)
.+...++|||.||+|||||||+||+++++..... .+ ....||.+.+++.+|+.|+++|.++
T Consensus 121 -~~~~~~~PqQ~Ng~DCGvfv~~~~~~l~~~~~~~-------~~---~~~~~~~~~~i~~~R~~i~~lI~~~ 181 (186)
T 2oix_A 121 -QTHEMPIAIQSDGYSAGDHVLTGIEVLAHRVLDG-------TF---DYAGGRDLTDIEPDRGLIRDRLAQA 181 (186)
T ss_dssp -GCEEECBCCCC--CCHHHHHHHHHHHHHHHHHHT-------CT---TSTTTTCBTTCCCCHHHHHHHHHCC
T ss_pred -CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC-------CC---CCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf -3346899978997777999999999999987525-------76---6777689999999999999999852
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=1.00 E-value=1 Score=24.02 Aligned_cols=126 Identities=21% Similarity=0.282 Sum_probs=68.3
Q ss_pred CCCEEEEEEECCCCCCCCCHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCCEECC-
Q ss_conf 8847999994599987655023421047772999818998750268999999999999--8428999998765400000-
Q 002578 440 SLHWSLIVICHPGEVPYFRDDEIEKSLKVPCILHMDSIKGSHRGLKNLIQGYLSEEWK--ERHSNTDDEVPSKFLRLQF- 516 (906)
Q Consensus 440 ~sHWSLIVId~P~~v~~f~D~e~e~s~k~p~Il~LDSL~gsn~~i~~~Ir~YL~eE~k--~K~~~~~dd~sskf~~lrv- 516 (906)
+.||.-+..+ |. ..+++.||.++=+..++.++-+ -+|. .|+.. +...+.+ .+..
T Consensus 52 GvHWiA~Aw~-P~---------------s~~~YmFDPfG~sd~~L~qiY~----F~Y~~llkRSA-L~sspdR--Cv~Lv 108 (204)
T 4ekf_A 52 GVHWMAFAWN-PR---------------SKTCYLFEPFGFSDQRLKQVYQ----FEYESLLRRSA-IASSPDR--CITLE 108 (204)
T ss_dssp CCCEEEEEEE-TT---------------TTEEEEECTBTTCSHHHHHHHH----HHHHHHHHHHC-C----------EEE
T ss_pred CEEEEEEEEC-CC---------------CCEEEEECCCCCCHHHHHHHHH----HHHHHHHHHHH-HCCCCCC--EEEEE
T ss_conf 6157786765-88---------------6648876798887899999860----11998998876-5079883--16988
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 25998876799971999999999998167--468783211112222337977846768999999999999997223
Q 002578 517 APLELPQQQNSFDCGLFLLHYVELFLKEA--LSNFNPLKKKQVSNFLNRNWFPPAEVSMKRAQIKKLLYEISKDHS 590 (906)
Q Consensus 517 v~~nVPQQ~Ng~DCGIFVL~YaE~fl~~~--Pi~Fsq~~i~~~s~fl~~nWFpp~eIs~kR~~IkkLIleL~k~~~ 590 (906)
...+.-|=.++--||+|.+.|+.+|...+ |.+-+|.. .-+...-......|.....+|.+= +.+..++..++
T Consensus 109 kstqsVQcp~SaACGLFC~lFL~aF~~~p~~pm~~Np~m-d~~~Gvp~~~l~~P~~~~~lh~NQ-e~LY~fl~~hS 182 (204)
T 4ekf_A 109 KSTQSVQGPNSAAAGLFCCMFLHAFANWPQTPMDHNPTM-NLITGVPNSMLNSPQVQPTLRRNQ-EQLYSFLERHS 182 (204)
T ss_dssp ECCSBCSCTTCCCHHHHHHHHHHHHHHCTTSCSSSSTTG-GGCCCBCGGGTTCGGGHHHHHHHH-HHHHHHHHHHC
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHCC
T ss_conf 646421076726688999999999986878877789711-111685711036985257788719-99999999639
No 8
>2oy9_A UPF0223 protein BH2638; PFAM, structural genomics, PSI-2, protein structure initiative; 1.60A {Bacillus halodurans c-125} SCOP: a.276.1.1
Probab=1.00 E-value=1 Score=13.27 Aligned_cols=12 Identities=17% Similarity=0.368 Sum_probs=8.6
Q ss_pred CCCCCCHHHHHH
Q ss_conf 998647999999
Q 002578 359 PDTFINDTIIDF 370 (906)
Q Consensus 359 p~eWLNDtIIDF 370 (906)
...|=+++||+-
T Consensus 10 d~dWSteEii~V 21 (98)
T 2oy9_A 10 SLDWSTEEVIDV 21 (98)
T ss_dssp CCCCCHHHHHHH
T ss_pred CCCCCHHHHHHH
T ss_conf 999789999999
No 9
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=1.00 E-value=1 Score=12.06 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCHHHHH
Q ss_conf 9856865566301111
Q 002578 837 PCFKGETCNLSHEVLL 852 (906)
Q Consensus 837 ~~~~~~~~~~~~~~~~ 852 (906)
-|-+|..|.+||.|-|
T Consensus 31 wCp~G~~Cp~SHDiDl 46 (50)
T 2fc6_A 31 WCPLGPQCPQSHDISG 46 (50)
T ss_dssp CCTTGGGCSSBCCCCC
T ss_pred CCCCCCCCCCCCCCCC
T ss_conf 2788887886345788
No 10
>1t4w_A CEP-1, C.elegans P53 tumor suppressor-like transcription factor; DNA-binding domain; 2.10A {Caenorhabditis elegans} SCOP: b.2.5.2
Probab=1.00 E-value=1 Score=11.89 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHCHHCCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 000000487784344034330014469998111058988897651
Q 002578 708 TDEQMATSPYNVENFKQVTRLARKYCGVPPKIWCDKQFSPDFDIL 752 (906)
Q Consensus 708 ~~e~~~~~~~~~~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 752 (906)
+|+.+.+++. ...+-+++++|-+ |+.+||+.
T Consensus 106 Sghhw~~~s~--kg~tf~~i~~PGt------------~q~~FDlI 136 (196)
T 1t4w_A 106 SEHEFSYSAE--KGSTFTLIMYPGA------------VQANFDII 136 (196)
T ss_dssp CSSEEEEECT--TSSEEEEECCTTC------------CEEEEEEE
T ss_pred CCCCEEECCC--CCCEEEEEECCCC------------EEHHHHHH
T ss_conf 7750123488--9817999976882------------32137899
Done!