Query 002579
Match_columns 905
No_of_seqs 463 out of 1907
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 02:51:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002579.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002579hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10314 putative acyltransfer 99.1 5.1E-10 1.1E-14 111.2 10.2 81 777-858 52-135 (153)
2 KOG1244 Predicted transcriptio 99.1 2.8E-11 6.1E-16 127.9 0.8 102 512-673 222-329 (336)
3 PF13508 Acetyltransf_7: Acety 99.0 2E-09 4.4E-14 94.1 11.2 76 774-854 4-79 (79)
4 KOG0956 PHD finger protein AF1 99.0 2.3E-10 4.9E-15 132.5 4.8 142 535-682 19-187 (900)
5 COG1246 ArgA N-acetylglutamate 99.0 7.3E-10 1.6E-14 110.3 7.1 90 769-862 38-128 (153)
6 PF00583 Acetyltransf_1: Acety 99.0 3E-09 6.5E-14 92.2 9.9 74 779-853 2-83 (83)
7 PF13673 Acetyltransf_10: Acet 98.9 8.3E-09 1.8E-13 94.9 10.7 74 773-852 44-117 (117)
8 KOG4323 Polycomb-like PHD Zn-f 98.9 1E-09 2.2E-14 125.1 5.2 211 512-744 81-301 (464)
9 KOG1512 PHD Zn-finger protein 98.8 1.2E-09 2.6E-14 116.4 1.2 80 535-672 276-360 (381)
10 PTZ00330 acetyltransferase; Pr 98.8 4.6E-08 9.9E-13 93.7 10.8 83 774-857 53-141 (147)
11 PRK10146 aminoalkylphosphonic 98.7 4.9E-08 1.1E-12 93.2 9.1 80 776-856 50-137 (144)
12 COG5141 PHD zinc finger-contai 98.7 7.2E-09 1.5E-13 116.8 3.4 129 513-658 192-341 (669)
13 PLN02706 glucosamine 6-phospha 98.7 1E-07 2.2E-12 92.4 10.6 82 774-856 54-143 (150)
14 cd02169 Citrate_lyase_ligase C 98.7 6.4E-08 1.4E-12 106.5 9.7 73 778-856 11-83 (297)
15 PF13527 Acetyltransf_9: Acety 98.7 1.7E-07 3.7E-12 87.9 10.9 111 732-855 10-127 (127)
16 PLN02825 amino-acid N-acetyltr 98.7 1.1E-07 2.4E-12 111.4 11.6 104 776-883 410-514 (515)
17 PRK07922 N-acetylglutamate syn 98.6 1.2E-07 2.6E-12 95.6 10.0 79 776-857 48-127 (169)
18 PRK03624 putative acetyltransf 98.6 1.1E-07 2.5E-12 88.9 8.9 82 774-857 46-130 (140)
19 PRK07757 acetyltransferase; Pr 98.6 1.4E-07 3.1E-12 91.5 9.7 81 777-860 45-125 (152)
20 KOG0955 PHD finger protein BR1 98.6 2.3E-08 4.9E-13 123.5 4.8 128 511-655 216-365 (1051)
21 KOG0825 PHD Zn-finger protein 98.6 1.3E-08 2.9E-13 119.3 2.3 55 611-676 212-267 (1134)
22 KOG0954 PHD finger protein [Ge 98.6 2.5E-08 5.4E-13 116.9 3.7 151 510-676 267-440 (893)
23 COG2153 ElaA Predicted acyltra 98.6 1.7E-07 3.6E-12 92.6 7.8 85 775-860 52-139 (155)
24 TIGR01890 N-Ac-Glu-synth amino 98.5 3.4E-07 7.3E-12 105.2 11.3 84 777-862 326-410 (429)
25 TIGR01575 rimI ribosomal-prote 98.5 4.7E-07 1E-11 84.0 10.1 80 776-857 34-116 (131)
26 KOG4299 PHD Zn-finger protein 98.5 5.3E-08 1.1E-12 113.5 4.4 61 502-571 239-305 (613)
27 TIGR00124 cit_ly_ligase [citra 98.5 3.1E-07 6.8E-12 102.6 9.8 81 773-859 31-111 (332)
28 TIGR02382 wecD_rffC TDP-D-fuco 98.5 4.6E-07 1E-11 92.5 10.2 80 777-857 103-185 (191)
29 PRK10975 TDP-fucosamine acetyl 98.5 5.3E-07 1.1E-11 92.0 10.4 84 773-857 102-188 (194)
30 PRK09491 rimI ribosomal-protei 98.5 1.1E-06 2.3E-11 85.0 11.0 85 772-858 39-126 (146)
31 PRK05279 N-acetylglutamate syn 98.5 6.5E-07 1.4E-11 103.1 10.6 85 776-862 337-422 (441)
32 PF15446 zf-PHD-like: PHD/FYVE 98.4 3.2E-07 6.9E-12 92.3 6.5 60 516-581 1-70 (175)
33 PRK12308 bifunctional arginino 98.4 6.2E-07 1.4E-11 107.5 10.1 82 776-860 506-587 (614)
34 TIGR03827 GNAT_ablB putative b 98.4 8.4E-07 1.8E-11 95.6 9.6 84 773-857 158-245 (266)
35 KOG0383 Predicted helicase [Ge 98.4 1.6E-07 3.4E-12 112.4 3.1 156 543-740 1-163 (696)
36 PRK13688 hypothetical protein; 98.4 1.6E-06 3.4E-11 87.2 9.3 75 778-858 50-134 (156)
37 PRK09831 putative acyltransfer 98.3 1.5E-06 3.1E-11 84.7 8.3 73 776-859 56-128 (147)
38 PRK10140 putative acetyltransf 98.3 3.3E-06 7.1E-11 81.9 10.3 85 773-859 51-143 (162)
39 PHA00673 acetyltransferase dom 98.3 3.9E-06 8.4E-11 84.5 10.7 83 773-856 55-145 (154)
40 KOG4299 PHD Zn-finger protein 98.3 5E-07 1.1E-11 105.5 4.5 50 616-674 255-304 (613)
41 TIGR03448 mycothiol_MshD mycot 98.2 9.9E-06 2.1E-10 87.2 11.3 81 774-857 47-128 (292)
42 TIGR03448 mycothiol_MshD mycot 98.2 8.1E-06 1.8E-10 87.9 10.0 86 771-857 198-288 (292)
43 KOG3396 Glucosamine-phosphate 98.1 7.3E-06 1.6E-10 80.3 8.5 83 773-856 53-143 (150)
44 KOG3139 N-acetyltransferase [G 98.1 1.3E-05 2.7E-10 80.8 10.2 73 784-857 68-146 (165)
45 KOG4443 Putative transcription 98.1 9.3E-07 2E-11 103.5 2.6 80 534-669 31-113 (694)
46 TIGR02406 ectoine_EctA L-2,4-d 98.1 1.1E-05 2.5E-10 80.1 9.6 83 774-857 40-128 (157)
47 COG0456 RimI Acetyltransferase 98.1 1.5E-05 3.3E-10 78.5 9.6 76 783-859 72-156 (177)
48 PF13420 Acetyltransf_4: Acety 98.1 2.8E-05 6E-10 75.4 10.6 76 780-857 58-139 (155)
49 TIGR03103 trio_acet_GNAT GNAT- 98.0 1.8E-05 3.9E-10 94.0 10.6 85 772-857 122-217 (547)
50 cd04301 NAT_SF N-Acyltransfera 98.0 2.4E-05 5.1E-10 62.0 7.9 61 776-836 2-64 (65)
51 PRK01346 hypothetical protein; 98.0 2.2E-05 4.8E-10 89.2 10.0 80 775-857 49-136 (411)
52 PHA01807 hypothetical protein 98.0 1.9E-05 4.1E-10 79.3 8.1 75 774-848 54-135 (153)
53 PF08445 FR47: FR47-like prote 98.0 3.3E-05 7.2E-10 70.1 8.8 75 781-857 6-82 (86)
54 PRK10562 putative acetyltransf 97.9 3.8E-05 8.3E-10 74.4 8.9 76 776-858 51-126 (145)
55 PF00628 PHD: PHD-finger; Int 97.9 1.4E-06 3.1E-11 71.0 -0.9 48 617-673 2-49 (51)
56 PRK10514 putative acetyltransf 97.9 4.8E-05 1E-09 73.0 9.1 73 779-859 56-128 (145)
57 PRK15130 spermidine N1-acetylt 97.9 6.2E-05 1.4E-09 75.8 10.3 81 775-857 59-145 (186)
58 PF13523 Acetyltransf_8: Acety 97.9 9.1E-05 2E-09 72.1 10.5 87 771-858 46-142 (152)
59 TIGR01686 FkbH FkbH-like domai 97.9 5.3E-05 1.1E-09 84.0 9.8 82 772-855 230-319 (320)
60 smart00249 PHD PHD zinc finger 97.8 1.5E-05 3.2E-10 62.4 3.4 46 617-672 2-47 (47)
61 TIGR01211 ELP3 histone acetylt 97.8 5.8E-05 1.2E-09 89.2 9.7 77 780-857 421-516 (522)
62 COG3393 Predicted acetyltransf 97.8 6.4E-05 1.4E-09 81.1 8.7 84 773-857 177-262 (268)
63 TIGR03585 PseH pseudaminic aci 97.8 0.00017 3.7E-09 69.8 10.6 80 777-859 55-140 (156)
64 PF13718 GNAT_acetyltr_2: GNAT 97.8 0.00017 3.6E-09 75.4 10.9 88 769-857 23-176 (196)
65 PF00628 PHD: PHD-finger; Int 97.7 1.4E-05 2.9E-10 65.3 2.0 46 516-570 1-50 (51)
66 KOG0383 Predicted helicase [Ge 97.7 2.1E-05 4.5E-10 94.7 3.6 48 511-570 44-93 (696)
67 KOG1244 Predicted transcriptio 97.7 1.4E-05 3E-10 85.6 1.7 50 514-572 281-332 (336)
68 KOG1512 PHD Zn-finger protein 97.7 1.7E-05 3.7E-10 85.3 1.9 53 509-570 309-362 (381)
69 KOG3397 Acetyltransferases [Ge 97.6 7.9E-05 1.7E-09 75.8 6.2 114 781-897 65-181 (225)
70 PRK10809 ribosomal-protein-S5- 97.6 0.00029 6.2E-09 71.6 9.7 83 773-857 77-166 (194)
71 KOG1973 Chromatin remodeling p 97.5 3.8E-05 8.2E-10 84.0 2.3 37 534-570 228-267 (274)
72 smart00249 PHD PHD zinc finger 97.5 8.1E-05 1.7E-09 58.2 3.3 44 516-568 1-47 (47)
73 PF13302 Acetyltransf_3: Acety 97.5 0.00091 2E-08 63.3 10.7 79 773-853 56-142 (142)
74 PRK10151 ribosomal-protein-L7/ 97.5 0.00084 1.8E-08 67.2 10.6 78 779-858 73-156 (179)
75 COG5034 TNG2 Chromatin remodel 97.4 7.2E-05 1.6E-09 79.8 2.2 49 611-674 218-269 (271)
76 COG5034 TNG2 Chromatin remodel 97.3 0.00011 2.3E-09 78.6 2.4 49 511-570 218-269 (271)
77 KOG1973 Chromatin remodeling p 97.3 8.7E-05 1.9E-09 81.2 1.8 37 631-674 228-267 (274)
78 COG3153 Predicted acetyltransf 97.3 0.001 2.2E-08 68.4 8.8 136 730-885 12-152 (171)
79 KOG1473 Nucleosome remodeling 97.2 9.1E-05 2E-09 91.0 0.3 129 512-679 342-483 (1414)
80 KOG0957 PHD finger protein [Ge 97.2 0.00017 3.6E-09 82.6 1.8 124 516-654 121-276 (707)
81 KOG4443 Putative transcription 97.1 0.00016 3.6E-09 85.3 1.7 140 505-673 59-200 (694)
82 COG1247 Sortase and related ac 97.1 0.0021 4.6E-08 65.9 9.1 113 767-885 46-166 (169)
83 KOG0825 PHD Zn-finger protein 97.1 0.00019 4.1E-09 85.6 1.4 48 514-570 215-265 (1134)
84 KOG3216 Diamine acetyltransfer 96.8 0.015 3.3E-07 58.6 11.7 123 727-857 15-146 (163)
85 PF13831 PHD_2: PHD-finger; PD 96.7 0.00041 8.9E-09 53.8 0.1 34 536-569 2-36 (36)
86 KOG0957 PHD finger protein [Ge 96.7 0.00066 1.4E-08 77.9 1.7 58 615-683 545-608 (707)
87 PF12746 GNAT_acetyltran: GNAT 96.4 0.018 3.9E-07 63.0 10.5 77 779-857 171-247 (265)
88 PF12568 DUF3749: Acetyltransf 96.3 0.035 7.6E-07 54.6 10.7 80 772-857 39-125 (128)
89 cd04718 BAH_plant_2 BAH, or Br 96.3 0.0019 4.1E-08 64.8 2.0 27 644-675 1-27 (148)
90 KOG0955 PHD finger protein BR1 96.3 0.0025 5.4E-08 80.1 3.5 57 612-679 217-273 (1051)
91 PF08444 Gly_acyl_tr_C: Aralky 96.3 0.0072 1.6E-07 56.0 5.4 75 777-856 3-79 (89)
92 PF14542 Acetyltransf_CG: GCN5 96.2 0.025 5.5E-07 50.8 8.2 56 777-833 3-58 (78)
93 COG0454 WecD Histone acetyltra 96.1 0.0074 1.6E-07 50.6 4.3 44 803-852 87-130 (156)
94 COG1444 Predicted P-loop ATPas 96.1 0.0065 1.4E-07 74.4 5.2 58 798-857 532-591 (758)
95 COG1670 RimL Acetyltransferase 96.0 0.036 7.7E-07 54.2 9.4 88 771-860 64-161 (187)
96 KOG4144 Arylalkylamine N-acety 96.0 0.0054 1.2E-07 61.8 3.4 61 796-857 100-161 (190)
97 KOG1245 Chromatin remodeling c 95.8 0.0023 4.9E-08 83.1 -0.0 60 612-682 1106-1165(1404)
98 COG2388 Predicted acetyltransf 95.8 0.021 4.6E-07 53.9 6.3 66 771-840 15-80 (99)
99 KOG0956 PHD finger protein AF1 95.8 0.0046 1E-07 73.5 2.4 51 613-674 4-56 (900)
100 COG3053 CitC Citrate lyase syn 95.7 0.049 1.1E-06 60.0 9.5 79 773-857 37-115 (352)
101 KOG2488 Acetyltransferase (GNA 95.7 0.035 7.6E-07 57.9 7.8 84 773-857 93-182 (202)
102 cd04718 BAH_plant_2 BAH, or Br 95.7 0.0053 1.2E-07 61.6 1.9 25 547-571 1-27 (148)
103 KOG4323 Polycomb-like PHD Zn-f 95.0 0.011 2.4E-07 68.6 2.0 49 516-571 170-224 (464)
104 KOG0954 PHD finger protein [Ge 94.7 0.014 3E-07 70.2 1.6 51 613-674 270-320 (893)
105 KOG3138 Predicted N-acetyltran 94.4 0.036 7.8E-07 57.9 3.8 62 797-859 89-154 (187)
106 COG5141 PHD zinc finger-contai 94.3 0.015 3.3E-07 67.1 0.9 47 615-672 194-240 (669)
107 KOG1245 Chromatin remodeling c 94.2 0.011 2.5E-07 76.9 -0.5 52 512-572 1106-1159(1404)
108 COG4552 Eis Predicted acetyltr 94.1 0.075 1.6E-06 60.0 5.5 84 767-857 35-127 (389)
109 PF13480 Acetyltransf_6: Acety 94.0 0.39 8.4E-06 45.3 9.6 65 773-838 71-135 (142)
110 KOG3234 Acetyltransferase, (GN 93.1 0.12 2.6E-06 52.6 4.7 59 796-855 68-129 (173)
111 KOG3235 Subunit of the major N 92.9 0.29 6.2E-06 50.0 6.9 81 777-857 45-135 (193)
112 TIGR03694 exosort_acyl putativ 92.8 0.6 1.3E-05 50.5 9.7 94 763-857 46-200 (241)
113 PF06852 DUF1248: Protein of u 92.5 0.72 1.6E-05 48.2 9.4 83 773-857 47-137 (181)
114 PF13831 PHD_2: PHD-finger; PD 92.2 0.021 4.6E-07 44.4 -1.6 33 633-672 2-35 (36)
115 COG1243 ELP3 Histone acetyltra 92.1 0.12 2.7E-06 60.0 3.6 64 790-857 446-509 (515)
116 smart00258 SAND SAND domain. 91.8 0.13 2.9E-06 46.1 2.7 50 260-311 19-69 (73)
117 PF01342 SAND: SAND domain; I 89.7 0.1 2.2E-06 47.7 0.1 55 255-311 18-78 (82)
118 PF07897 DUF1675: Protein of u 88.3 0.73 1.6E-05 51.2 5.4 69 225-297 208-283 (284)
119 PF00765 Autoind_synth: Autoin 88.1 3 6.5E-05 43.5 9.5 83 771-855 44-153 (182)
120 PRK13834 putative autoinducer 87.5 3.5 7.7E-05 43.7 9.8 118 730-854 16-162 (207)
121 PF12861 zf-Apc11: Anaphase-pr 86.0 0.38 8.2E-06 44.4 1.4 59 513-572 20-81 (85)
122 COG3981 Predicted acetyltransf 85.3 1.4 3.1E-05 45.6 5.3 69 771-841 68-141 (174)
123 PF12678 zf-rbx1: RING-H2 zinc 85.1 0.24 5.3E-06 44.0 -0.3 54 514-569 19-73 (73)
124 cd04264 DUF619-NAGS DUF619 dom 84.9 2 4.4E-05 40.7 5.8 48 779-826 14-63 (99)
125 PF07227 DUF1423: Protein of u 83.9 1 2.2E-05 52.6 3.9 55 617-675 131-192 (446)
126 PF13639 zf-RING_2: Ring finge 83.2 0.11 2.4E-06 41.2 -2.9 43 516-569 2-44 (44)
127 PF14446 Prok-RING_1: Prokaryo 81.5 1 2.2E-05 38.3 2.0 34 513-554 4-37 (54)
128 PF02474 NodA: Nodulation prot 78.8 3.3 7E-05 43.1 5.0 51 797-848 85-135 (196)
129 TIGR03019 pepcterm_femAB FemAB 76.8 6.9 0.00015 43.7 7.4 81 775-856 197-280 (330)
130 cd04265 DUF619-NAGS-U DUF619 d 75.0 6 0.00013 37.6 5.4 48 779-826 15-63 (99)
131 PF11793 FANCL_C: FANCL C-term 74.8 1.9 4.1E-05 38.2 1.9 52 515-572 3-65 (70)
132 PF13832 zf-HC5HC2H_2: PHD-zin 71.1 1.7 3.8E-05 40.9 0.8 32 615-654 56-89 (110)
133 KOG2535 RNA polymerase II elon 70.3 6 0.00013 45.0 4.8 65 789-857 481-547 (554)
134 KOG1473 Nucleosome remodeling 69.8 2.4 5.2E-05 54.0 1.8 45 615-673 345-389 (1414)
135 KOG2752 Uncharacterized conser 68.9 4.9 0.00011 45.2 3.7 103 534-653 64-167 (345)
136 PF14446 Prok-RING_1: Prokaryo 67.7 3.4 7.3E-05 35.3 1.7 34 615-653 6-39 (54)
137 KOG2779 N-myristoyl transferas 66.6 15 0.00033 42.1 7.0 132 713-850 80-226 (421)
138 PF13771 zf-HC5HC2H: PHD-like 65.8 2.3 5.1E-05 38.5 0.5 31 616-654 38-70 (90)
139 PF01853 MOZ_SAS: MOZ/SAS fami 64.9 18 0.00039 38.3 6.7 83 730-829 26-112 (188)
140 PF01233 NMT: Myristoyl-CoA:pr 63.3 59 0.0013 33.7 9.9 111 712-833 22-146 (162)
141 KOG4628 Predicted E3 ubiquitin 62.6 6.4 0.00014 45.1 3.2 46 515-572 230-277 (348)
142 PF15446 zf-PHD-like: PHD/FYVE 62.0 4.2 9.1E-05 42.1 1.5 57 617-677 2-62 (175)
143 PLN03238 probable histone acet 61.7 12 0.00026 41.9 5.0 83 731-830 102-188 (290)
144 COG3818 Predicted acetyltransf 58.9 29 0.00063 34.9 6.6 60 802-861 89-152 (167)
145 KOG1701 Focal adhesion adaptor 58.3 2.2 4.9E-05 49.4 -1.3 35 616-652 396-430 (468)
146 PF04377 ATE_C: Arginine-tRNA- 57.1 52 0.0011 32.7 8.1 61 774-835 40-100 (128)
147 PF13880 Acetyltransf_13: ESCO 56.2 8.7 0.00019 34.5 2.3 26 800-825 8-33 (70)
148 COG5628 Predicted acetyltransf 55.9 35 0.00075 34.0 6.5 73 776-853 40-119 (143)
149 PRK00756 acyltransferase NodA; 54.1 21 0.00046 37.1 4.9 39 796-835 84-122 (196)
150 KOG4135 Predicted phosphogluco 53.2 30 0.00066 35.5 5.7 58 797-855 107-168 (185)
151 KOG1298 Squalene monooxygenase 52.9 12 0.00025 43.7 3.2 187 21-245 97-318 (509)
152 PTZ00064 histone acetyltransfe 52.3 17 0.00037 43.5 4.4 80 730-826 330-413 (552)
153 PHA02929 N1R/p28-like protein; 51.8 5.3 0.00012 43.5 0.3 54 513-572 173-226 (238)
154 PLN03239 histone acetyltransfe 51.3 21 0.00045 41.0 4.9 82 730-828 159-244 (351)
155 PF13444 Acetyltransf_5: Acety 51.3 31 0.00066 32.2 5.3 25 795-819 76-100 (101)
156 KOG2747 Histone acetyltransfer 51.2 16 0.00035 42.5 4.0 74 730-821 208-284 (396)
157 PLN02400 cellulose synthase 50.6 14 0.00029 47.9 3.5 60 511-576 33-92 (1085)
158 PF14569 zf-UDP: Zinc-binding 50.4 3.6 7.8E-05 37.5 -1.0 58 511-574 6-63 (80)
159 KOG1734 Predicted RING-contain 50.0 4 8.6E-05 45.0 -1.0 55 513-572 223-280 (328)
160 PLN02638 cellulose synthase A 46.8 13 0.00029 48.0 2.7 58 511-574 14-71 (1079)
161 PLN00104 MYST -like histone ac 46.1 22 0.00047 42.2 4.1 76 730-822 252-331 (450)
162 PLN02436 cellulose synthase A 46.1 15 0.00034 47.4 3.1 59 511-575 33-91 (1094)
163 PF13901 DUF4206: Domain of un 43.1 20 0.00042 38.1 2.9 35 616-651 154-188 (202)
164 PF04958 AstA: Arginine N-succ 42.8 36 0.00078 39.1 5.1 76 726-820 30-144 (342)
165 cd00162 RING RING-finger (Real 42.0 8.6 0.00019 29.0 0.0 31 538-570 12-43 (45)
166 PF12261 T_hemolysin: Thermost 41.2 76 0.0017 33.4 6.8 64 795-863 85-150 (179)
167 PRK14852 hypothetical protein; 40.9 80 0.0017 41.1 8.1 64 795-858 119-182 (989)
168 PLN02189 cellulose synthase 40.5 21 0.00045 46.2 3.0 57 512-574 32-88 (1040)
169 KOG1246 DNA-binding protein ju 39.7 21 0.00045 45.9 2.9 48 616-675 157-204 (904)
170 PF13832 zf-HC5HC2H_2: PHD-zin 39.1 16 0.00035 34.4 1.4 31 513-554 54-86 (110)
171 PF13901 DUF4206: Domain of un 38.8 28 0.0006 36.9 3.2 46 512-570 150-197 (202)
172 COG5194 APC11 Component of SCF 38.7 9.5 0.00021 35.1 -0.2 56 515-572 21-80 (88)
173 PF11793 FANCL_C: FANCL C-term 38.4 14 0.00031 32.7 0.8 35 616-653 4-40 (70)
174 TIGR03244 arg_catab_AstA argin 38.2 54 0.0012 37.7 5.5 49 772-820 54-140 (336)
175 KOG2036 Predicted P-loop ATPas 37.8 27 0.00058 43.5 3.2 29 798-826 615-643 (1011)
176 TIGR03245 arg_AOST_alph argini 37.6 52 0.0011 37.8 5.3 49 772-820 55-141 (336)
177 TIGR03243 arg_catab_AOST argin 37.5 54 0.0012 37.7 5.3 49 772-820 54-140 (335)
178 PRK10456 arginine succinyltran 36.8 52 0.0011 37.9 5.2 50 771-820 55-142 (344)
179 PF02591 DUF164: Putative zinc 36.4 13 0.00028 31.3 0.3 35 513-547 21-55 (56)
180 KOG1428 Inhibitor of type V ad 34.5 6.8 0.00015 51.3 -2.4 31 543-573 3506-3544(3738)
181 PLN02915 cellulose synthase A 34.2 29 0.00064 44.9 2.9 56 513-574 14-69 (1044)
182 KOG1632 Uncharacterized PHD Zn 34.1 23 0.00049 40.7 1.8 44 634-681 74-119 (345)
183 PF10497 zf-4CXXC_R1: Zinc-fin 33.3 12 0.00027 35.8 -0.4 52 616-675 9-70 (105)
184 PRK01305 arginyl-tRNA-protein 33.1 2.1E+02 0.0046 31.5 8.9 56 779-835 150-205 (240)
185 COG5027 SAS2 Histone acetyltra 33.1 23 0.00051 40.5 1.6 75 729-820 207-285 (395)
186 KOG0804 Cytoplasmic Zn-finger 32.7 17 0.00037 42.8 0.5 47 513-571 174-220 (493)
187 KOG1246 DNA-binding protein ju 31.5 33 0.00072 44.1 2.8 49 513-571 154-204 (904)
188 KOG4628 Predicted E3 ubiquitin 31.1 26 0.00056 40.3 1.6 46 615-674 230-275 (348)
189 PF10367 Vps39_2: Vacuolar sor 30.9 36 0.00078 31.3 2.3 33 512-554 76-108 (109)
190 COG0143 MetG Methionyl-tRNA sy 30.2 51 0.0011 40.3 4.0 30 615-652 143-172 (558)
191 COG3916 LasI N-acyl-L-homoseri 29.9 2.6E+02 0.0056 30.3 8.6 81 771-852 51-158 (209)
192 TIGR02174 CXXU_selWTH selT/sel 29.3 37 0.0008 30.2 2.0 29 40-69 39-67 (72)
193 KOG1493 Anaphase-promoting com 29.0 8.6 0.00019 35.1 -2.1 59 514-573 20-81 (84)
194 KOG1701 Focal adhesion adaptor 28.6 45 0.00097 39.3 2.9 29 513-543 359-387 (468)
195 KOG1829 Uncharacterized conser 28.5 18 0.00039 44.1 -0.2 51 617-680 514-564 (580)
196 PHA02926 zinc finger-like prot 27.4 30 0.00066 37.6 1.3 59 511-572 167-229 (242)
197 PF10497 zf-4CXXC_R1: Zinc-fin 26.7 31 0.00067 33.1 1.1 49 512-570 5-69 (105)
198 PLN02195 cellulose synthase A 25.6 50 0.0011 42.6 2.9 56 512-573 4-59 (977)
199 PF10262 Rdx: Rdx family; Int 25.0 21 0.00045 31.8 -0.4 27 41-68 42-68 (76)
200 KOG4218 Nuclear hormone recept 24.8 26 0.00055 40.1 0.2 53 512-571 13-76 (475)
201 KOG0827 Predicted E3 ubiquitin 23.7 17 0.00038 42.0 -1.4 47 515-571 5-54 (465)
202 PF13771 zf-HC5HC2H: PHD-like 23.7 47 0.001 30.0 1.6 33 511-554 33-67 (90)
203 PF07649 C1_3: C1-like domain; 23.6 23 0.00049 26.2 -0.4 28 617-650 3-30 (30)
204 PF08746 zf-RING-like: RING-li 23.2 32 0.0007 27.8 0.4 39 517-568 1-43 (43)
205 COG4393 Predicted membrane pro 22.0 81 0.0018 36.2 3.3 63 474-546 297-359 (405)
206 PF05301 Mec-17: Touch recepto 21.9 67 0.0014 31.9 2.3 50 805-855 54-104 (120)
207 KOG0317 Predicted E3 ubiquitin 21.8 25 0.00054 39.4 -0.6 52 510-575 235-286 (293)
208 KOG2114 Vacuolar assembly/sort 21.4 41 0.00089 42.6 1.0 39 515-570 841-880 (933)
209 PF07943 PBP5_C: Penicillin-bi 21.3 1.1E+02 0.0024 27.3 3.6 27 781-807 62-88 (91)
210 PF07227 DUF1423: Protein of u 20.4 69 0.0015 38.0 2.5 43 528-570 136-191 (446)
211 COG5540 RING-finger-containing 20.4 35 0.00076 38.5 0.1 49 512-571 321-370 (374)
No 1
>PRK10314 putative acyltransferase; Provisional
Probab=99.08 E-value=5.1e-10 Score=111.16 Aligned_cols=81 Identities=17% Similarity=0.114 Sum_probs=72.2
Q ss_pred EEeeCCeEEEEEEEEEeCC--eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhc-CccEEEecchhhHHHHHHhccCcE
Q 002579 777 ILTVNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAEEAESIWTDKFGFK 853 (905)
Q Consensus 777 VL~~~~~vVsaA~lri~g~--~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~l-gV~~LvLpA~~~a~~~wt~kfGF~ 853 (905)
++..++++||+|+++..+. ..++|..|||+++|||+|+|++||..+++.++.. +...++|.|+..|++||++ |||.
T Consensus 52 ~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~k-~GF~ 130 (153)
T PRK10314 52 LGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQS-FGFI 130 (153)
T ss_pred EEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHHH-CCCE
Confidence 4567899999999987543 3689999999999999999999999999998875 7889999999999999999 9999
Q ss_pred EcCHH
Q 002579 854 KIDPE 858 (905)
Q Consensus 854 ~i~~~ 858 (905)
.+++.
T Consensus 131 ~~g~~ 135 (153)
T PRK10314 131 PVTEV 135 (153)
T ss_pred ECCCc
Confidence 99873
No 2
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=99.07 E-value=2.8e-11 Score=127.89 Aligned_cols=102 Identities=26% Similarity=0.729 Sum_probs=80.7
Q ss_pred CCCccccccCcCCCcCccc-ccCCCCceEeccCCCcccccccCCCC-----CCCCCCccccccccccccccccccccccc
Q 002579 512 GLGIICHCCNSEVSPSQFE-AHADGGNLLPCDGCPRAFHKECASLS-----SIPQGDWYCKYCQNMFERKRFLQHDANAV 585 (905)
Q Consensus 512 ~~gi~C~~C~~~~SpS~FE-~HAdgG~LL~CDgC~~afH~~CL~L~-----~vP~g~W~Cp~C~~~~~kek~v~~n~nav 585 (905)
-...+|..|...- .-+ ...-..+|+.|..|+++-|..||.++ .+....|.|..|+.
T Consensus 222 ~Pn~YCDFclgds---r~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~--------------- 283 (336)
T KOG1244|consen 222 QPNPYCDFCLGDS---RENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKY--------------- 283 (336)
T ss_pred cCCcccceecccc---ccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecce---------------
Confidence 3456799998521 000 11135689999999999999999743 46678899999983
Q ss_pred cccccccccchhhhhhhhhhhcccccccCCceeeccCCCCCCCCCCCCceeecCCCCCcCCcCCCCcCcCCcccCCCCCC
Q 002579 586 EAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGK 665 (905)
Q Consensus 586 a~Gr~~Gvd~ieqI~~R~iR~~kd~e~e~~~C~vC~~~df~~sg~~~~~LI~CDqC~rayHv~CL~p~~~~~L~evP~g~ 665 (905)
|.+|+.++ +++.+|+||-|++.||++||.| +|.+.|+|.
T Consensus 284 -------------------------------csicgtse------nddqllfcddcdrgyhmyclsp----pm~eppegs 322 (336)
T KOG1244|consen 284 -------------------------------CSICGTSE------NDDQLLFCDDCDRGYHMYCLSP----PMVEPPEGS 322 (336)
T ss_pred -------------------------------eccccCcC------CCceeEeecccCCceeeEecCC----CcCCCCCCc
Confidence 99999764 6789999999999999999998 788899999
Q ss_pred ceecCCcc
Q 002579 666 WFCCMDCS 673 (905)
Q Consensus 666 WfCp~~C~ 673 (905)
|-| .-|.
T Consensus 323 wsc-~KOG 329 (336)
T KOG1244|consen 323 WSC-HLCL 329 (336)
T ss_pred hhH-HHHH
Confidence 999 6664
No 3
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.04 E-value=2e-09 Score=94.09 Aligned_cols=76 Identities=18% Similarity=0.149 Sum_probs=66.8
Q ss_pred EEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCcE
Q 002579 774 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFK 853 (905)
Q Consensus 774 y~~VL~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF~ 853 (905)
+.++++.++++||++.+...++ .+.|..+||+++|||||+|+.||..+++.+.. ..++|.+.+.+.+||++ +||+
T Consensus 4 ~~~~~~~~~~ivG~~~~~~~~~-~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~~-~GF~ 78 (79)
T PF13508_consen 4 RFFVAEDDGEIVGFIRLWPNED-FAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYEK-LGFE 78 (79)
T ss_dssp EEEEEEETTEEEEEEEEEETTT-EEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHHH-TTEE
T ss_pred EEEEEEECCEEEEEEEEEEcCC-EEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHHH-CcCC
Confidence 5677799999999999977665 89999999999999999999999999888844 56788888999999999 9998
Q ss_pred E
Q 002579 854 K 854 (905)
Q Consensus 854 ~ 854 (905)
+
T Consensus 79 ~ 79 (79)
T PF13508_consen 79 E 79 (79)
T ss_dssp E
T ss_pred C
Confidence 5
No 4
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=99.00 E-value=2.3e-10 Score=132.53 Aligned_cols=142 Identities=23% Similarity=0.488 Sum_probs=91.4
Q ss_pred CCceEeccC--CCcccccccCCCCCCCCCCccccccccc-----------cccccccccccccc----------cccccc
Q 002579 535 GGNLLPCDG--CPRAFHKECASLSSIPQGDWYCKYCQNM-----------FERKRFLQHDANAV----------EAGRVS 591 (905)
Q Consensus 535 gG~LL~CDg--C~~afH~~CL~L~~vP~g~W~Cp~C~~~-----------~~kek~v~~n~nav----------a~Gr~~ 591 (905)
++.|+.||+ |.-+.|+.|+++.+||.|.|||+.|... .++++++....|.- ..-+|.
T Consensus 19 eNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHVVCALYIPEVrFg 98 (900)
T KOG0956|consen 19 ENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHVVCALYIPEVRFG 98 (900)
T ss_pred cCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceEEEEEeeccceeec
Confidence 568999995 9999999999999999999999999642 12333333332221 112333
Q ss_pred cccchhhhhhhhhhhcccccccCCceeeccCCCCCCCCCCCCceeecC--CCCCcCCcCCCCcCcCCcccCCC--CCCce
Q 002579 592 GVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKMADLRELP--KGKWF 667 (905)
Q Consensus 592 Gvd~ieqI~~R~iR~~kd~e~e~~~C~vC~~~df~~sg~~~~~LI~CD--qC~rayHv~CL~p~~~~~L~evP--~g~Wf 667 (905)
.|..+|+|.-..+.+ +.-...||||.+-+-. .....+..|.|. .|.++||+.|.+..++-.-++.- +.--|
T Consensus 99 NV~TMEPIiLq~VP~----dRfnKtCYIC~E~Grp-nkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKY 173 (900)
T KOG0956|consen 99 NVHTMEPIILQDVPH----DRFNKTCYICNEEGRP-NKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKY 173 (900)
T ss_pred ccccccceeeccCch----hhhcceeeeecccCCc-cccccccceecccccchhhhhhhHhhhhccceecccccccccee
Confidence 344444443221111 1223469999875322 122467889998 79999999999987653323211 12348
Q ss_pred ecCCccchhHHHHHh
Q 002579 668 CCMDCSRINSVLQNL 682 (905)
Q Consensus 668 Cp~~C~~I~~~Lq~L 682 (905)
| ..|+..+.+|.+-
T Consensus 174 C-GYCk~HfsKlkk~ 187 (900)
T KOG0956|consen 174 C-GYCKYHFSKLKKS 187 (900)
T ss_pred c-hhHHHHHHHhhcC
Confidence 8 8999999988764
No 5
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=98.99 E-value=7.3e-10 Score=110.28 Aligned_cols=90 Identities=18% Similarity=0.275 Sum_probs=78.4
Q ss_pred eecceEEEEEeeCCeEEEEEEEE-EeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHH
Q 002579 769 EFGGMYCAILTVNSSVVSAGILR-VFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 847 (905)
Q Consensus 769 ~f~Gfy~~VL~~~~~vVsaA~lr-i~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt 847 (905)
++..|+.+ +.+|.+||||.++ +.+.+++||.-|||+|+|||+|+|..|+..++..++.+|++++++-+. .+..|..
T Consensus 38 ~i~dF~i~--E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt-~~~~~F~ 114 (153)
T COG1246 38 EIDDFTII--ERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT-RSPEFFA 114 (153)
T ss_pred HHhhheee--eeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec-ccHHHHH
Confidence 45567665 8899999999999 789999999999999999999999999999999999999999997775 4555666
Q ss_pred hccCcEEcCHHHHHH
Q 002579 848 DKFGFKKIDPELLSI 862 (905)
Q Consensus 848 ~kfGF~~i~~~~~~~ 862 (905)
+ +||+.++.+++..
T Consensus 115 ~-~GF~~vd~~~LP~ 128 (153)
T COG1246 115 E-RGFTRVDKDELPE 128 (153)
T ss_pred H-cCCeECccccCCH
Confidence 6 9999999966543
No 6
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=98.98 E-value=3e-09 Score=92.21 Aligned_cols=74 Identities=20% Similarity=0.250 Sum_probs=67.9
Q ss_pred eeCCeEEEEEEEEEeCC-----eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhh---HHHHHHhcc
Q 002579 779 TVNSSVVSAGILRVFGQ-----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE---AESIWTDKF 850 (905)
Q Consensus 779 ~~~~~vVsaA~lri~g~-----~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~---a~~~wt~kf 850 (905)
+.+|++||++.+++... ..+.|..++|+++|||||+|+.||+.+++.++..|+..|.+....+ +..||++ +
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k-~ 80 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEK-L 80 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHH-T
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHH-c
Confidence 68999999999999886 5999999999999999999999999999999999999998876554 5699998 9
Q ss_pred CcE
Q 002579 851 GFK 853 (905)
Q Consensus 851 GF~ 853 (905)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 7
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.91 E-value=8.3e-09 Score=94.91 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=65.0
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCc
Q 002579 773 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 852 (905)
Q Consensus 773 fy~~VL~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF 852 (905)
...+|++.+|++||.+.++ .-++|..+.|+|+|||+|+|++||..+++.++. |++.|.+.+...|.+||++ +||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~~-~GF 117 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYRK-LGF 117 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHHH-TT-
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHHh-CCC
Confidence 5567789999999999986 345599999999999999999999999999988 9999999999999999999 998
No 8
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=98.90 E-value=1e-09 Score=125.08 Aligned_cols=211 Identities=18% Similarity=0.228 Sum_probs=137.4
Q ss_pred CCCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCCCCCCCCCCccccccccccccccccccccccccccccc
Q 002579 512 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVS 591 (905)
Q Consensus 512 ~~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~L~~vP~g~W~Cp~C~~~~~kek~v~~n~nava~Gr~~ 591 (905)
.....|.+|..+... ...++..|+.|.++||+.|.-......+.|.+..|..........+.. .|+..
T Consensus 81 ~~e~~~nv~~s~~~~-------p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~K-----~g~~a 148 (464)
T KOG4323|consen 81 SSELNPNVLTSETVL-------PENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGALK-----KGRLA 148 (464)
T ss_pred ccccCCccccccccc-------CchhhhhhhhhccCcccccCccCcCcCCcccccccccccccccccccc-----ccccc
Confidence 345678888864332 467899999999999999985444445679999887653211111111 11111
Q ss_pred c-ccchhhhhhhhhhhcccccc-cCCceeeccCCCCCCCCCCCCceeecCCCCCcCCcCCCCcCcCCcccCCCCCCceec
Q 002579 592 G-VDSVEQITKRCIRIVKNLEA-ELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCC 669 (905)
Q Consensus 592 G-vd~ieqI~~R~iR~~kd~e~-e~~~C~vC~~~df~~sg~~~~~LI~CDqC~rayHv~CL~p~~~~~L~evP~g~WfCp 669 (905)
+ +-.+. .. ....|.-. -...|.+|....+ + ..+.||+|+.|..|||..|.+|..-+.+...|...|||
T Consensus 149 ~~~l~y~-~~----~l~wD~~~~~n~qc~vC~~g~~---~-~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C- 218 (464)
T KOG4323|consen 149 RPSLPYP-EA----SLDWDSGHKVNLQCSVCYCGGP---G-AGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFC- 218 (464)
T ss_pred cccccCc-cc----ccccCccccccceeeeeecCCc---C-ccceeeeecccccHHHHHhccCCCCHhhccCccceEee-
Confidence 0 00000 00 00000000 0123999986542 2 24489999999999999999987655566678999999
Q ss_pred CCccchhHHHHHhhhhccccCchhhhhh--hh--hhccCccccccccCcceeEcc-CCCCC---hhhHHHHHHHHHhhhh
Q 002579 670 MDCSRINSVLQNLLVQEAEKLPEFHLNA--IK--KYAGNSLETVSDIDVRWRLLS-GKAAT---PETRLLLSQAVAIFHD 741 (905)
Q Consensus 670 ~~C~~I~~~Lq~Lv~~g~e~lp~sll~~--I~--k~~e~gle~~~~~dikWqlLs-gk~~s---~e~~~kLs~Al~If~E 741 (905)
..|..-...+.++-.+|++.++..+.+. +. +++..-+++....+-.|..|. |...+ .+..+.+..|++-...
T Consensus 219 ~~C~~~~~~~~r~t~~~~dv~~lal~~~~~~~~~k~~~~~~ei~~f~e~~~~slp~~e~~tsp~~~~~~~~lsal~~~~~ 298 (464)
T KOG4323|consen 219 DVCNRGPKKVPRLTLRWADVLHLALYNLKPMLKKKYFKSLVEILLFCEESWPSLPFYEPKTSPVTERSSSLLSALSSYKS 298 (464)
T ss_pred hhhccchhhccccccccccccchhhhhhhhhhccCCcccHHHHHHHHhhccccccccCCccccccchhhHHHHhhhcccc
Confidence 8999999999999999999888766433 33 666665566666777888775 44443 4567778888887777
Q ss_pred cCC
Q 002579 742 CFD 744 (905)
Q Consensus 742 cFd 744 (905)
.|.
T Consensus 299 ~f~ 301 (464)
T KOG4323|consen 299 RFV 301 (464)
T ss_pred ccc
Confidence 664
No 9
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.80 E-value=1.2e-09 Score=116.35 Aligned_cols=80 Identities=31% Similarity=0.795 Sum_probs=68.3
Q ss_pred CCceEeccCCCcccccccCCCC-----CCCCCCccccccccccccccccccccccccccccccccchhhhhhhhhhhccc
Q 002579 535 GGNLLPCDGCPRAFHKECASLS-----SIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKN 609 (905)
Q Consensus 535 gG~LL~CDgC~~afH~~CL~L~-----~vP~g~W~Cp~C~~~~~kek~v~~n~nava~Gr~~Gvd~ieqI~~R~iR~~kd 609 (905)
.+.+++|..|..++|..|+.+. .+....|.|..|+-
T Consensus 276 ~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~l--------------------------------------- 316 (381)
T KOG1512|consen 276 RNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCEL--------------------------------------- 316 (381)
T ss_pred hccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHh---------------------------------------
Confidence 5689999999999999999743 35567899999972
Q ss_pred ccccCCceeeccCCCCCCCCCCCCceeecCCCCCcCCcCCCCcCcCCcccCCCCCCceecCCc
Q 002579 610 LEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDC 672 (905)
Q Consensus 610 ~e~e~~~C~vC~~~df~~sg~~~~~LI~CDqC~rayHv~CL~p~~~~~L~evP~g~WfCp~~C 672 (905)
|.+|++.. .+..+++||.|++.||..|+ .|..+|.|.|.|-..|
T Consensus 317 -------C~IC~~P~------~E~E~~FCD~CDRG~HT~CV------GL~~lP~G~WICD~~C 360 (381)
T KOG1512|consen 317 -------CRICLGPV------IESEHLFCDVCDRGPHTLCV------GLQDLPRGEWICDMRC 360 (381)
T ss_pred -------hhccCCcc------cchheeccccccCCCCcccc------ccccccCccchhhhHH
Confidence 99999763 57789999999999999999 5889999999994456
No 10
>PTZ00330 acetyltransferase; Provisional
Probab=98.77 E-value=4.6e-08 Score=93.75 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=72.3
Q ss_pred EEEEEeeCCeEEEEEEEEEeC------CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHH
Q 002579 774 YCAILTVNSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 847 (905)
Q Consensus 774 y~~VL~~~~~vVsaA~lri~g------~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt 847 (905)
+.++...+|++||.+.+.... ...++|-.+.|+++|||+|+|+.||..+++.++..|+.+++|.+...|..||+
T Consensus 53 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~ 132 (147)
T PTZ00330 53 RVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYK 132 (147)
T ss_pred EEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHH
Confidence 345556789999999886532 23678889999999999999999999999999999999999999999999999
Q ss_pred hccCcEEcCH
Q 002579 848 DKFGFKKIDP 857 (905)
Q Consensus 848 ~kfGF~~i~~ 857 (905)
+ +||.....
T Consensus 133 k-~GF~~~~~ 141 (147)
T PTZ00330 133 K-LGFRACER 141 (147)
T ss_pred H-CCCEEece
Confidence 9 99998763
No 11
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=98.71 E-value=4.9e-08 Score=93.21 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=68.8
Q ss_pred EEEeeCCeEEEEEEEEEeC-----CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecch---hhHHHHHH
Q 002579 776 AILTVNSSVVSAGILRVFG-----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWT 847 (905)
Q Consensus 776 ~VL~~~~~vVsaA~lri~g-----~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~---~~a~~~wt 847 (905)
+|++.++++||.+.++... ...++|..++|+++|||||+|+.||..+++.++..|...+.|... ..|..||+
T Consensus 50 ~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~ 129 (144)
T PRK10146 50 HLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYL 129 (144)
T ss_pred EEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHH
Confidence 4567889999999987642 235789999999999999999999999999999999999988765 47999999
Q ss_pred hccCcEEcC
Q 002579 848 DKFGFKKID 856 (905)
Q Consensus 848 ~kfGF~~i~ 856 (905)
+ +||...+
T Consensus 130 ~-~Gf~~~~ 137 (144)
T PRK10146 130 R-EGYEQSH 137 (144)
T ss_pred H-cCCchhh
Confidence 9 9997653
No 12
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.70 E-value=7.2e-09 Score=116.80 Aligned_cols=129 Identities=26% Similarity=0.537 Sum_probs=78.0
Q ss_pred CCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCCCCCCCCCCcccccccccccccccccccccccccccccc
Q 002579 513 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSG 592 (905)
Q Consensus 513 ~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~L~~vP~g~W~Cp~C~~~~~kek~v~~n~nava~Gr~~G 592 (905)
-+..|.+|.+..+. +.+.+++||+|..+.|+.|+|+.-+|+|.|+|..|...-+.-. .........|.+..
T Consensus 192 ~d~~C~~c~~t~~e-------N~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~--~C~fCps~dGaFkq 262 (669)
T COG5141 192 FDDICTKCTSTHNE-------NSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIR--CCSFCPSSDGAFKQ 262 (669)
T ss_pred hhhhhHhccccccC-------CcceEEEecCcchhhhhhcccceecCcchhhhhhhccccccee--EEEeccCCCCceee
Confidence 45678888853221 4578999999999999999999999999999999964211000 00011112222222
Q ss_pred cc---chhhh--------h------hhhhhhccc--ccccCCceeeccCCCCCCCCCCCCceeecC--CCCCcCCcCCCC
Q 002579 593 VD---SVEQI--------T------KRCIRIVKN--LEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLK 651 (905)
Q Consensus 593 vd---~ieqI--------~------~R~iR~~kd--~e~e~~~C~vC~~~df~~sg~~~~~LI~CD--qC~rayHv~CL~ 651 (905)
.+ |...| . ..-++.+.. ...+..+|++|++. .|+.|+|. .|-++||++|.+
T Consensus 263 T~dgrW~H~iCA~~~pelsF~~l~~~dpI~~i~sVs~srwkl~C~iCk~~--------~GtcIqCs~~nC~~aYHVtCAr 334 (669)
T COG5141 263 TSDGRWGHVICAMFNPELSFGHLLSKDPIDNIASVSSSRWKLGCLICKEF--------GGTCIQCSYFNCTRAYHVTCAR 334 (669)
T ss_pred ccCCchHhHhHHHhcchhccccccccchhhhhcccchhhHhheeeEEccc--------Ccceeeecccchhhhhhhhhhh
Confidence 11 11000 0 000111110 11233469999974 68999999 599999999998
Q ss_pred cCcCCcc
Q 002579 652 KHKMADL 658 (905)
Q Consensus 652 p~~~~~L 658 (905)
..+.-++
T Consensus 335 rag~f~~ 341 (669)
T COG5141 335 RAGYFDL 341 (669)
T ss_pred hcchhhh
Confidence 7664333
No 13
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.69 E-value=1e-07 Score=92.36 Aligned_cols=82 Identities=13% Similarity=0.272 Sum_probs=69.1
Q ss_pred EEEEEee--CCeEEEEEEEEEeC------CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHH
Q 002579 774 YCAILTV--NSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESI 845 (905)
Q Consensus 774 y~~VL~~--~~~vVsaA~lri~g------~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~ 845 (905)
|.++.+. ++++||.+.+++.. ..++.|.-++|.++|||||+|+.|++.+++.++.+|+++|+|........|
T Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~ 133 (150)
T PLN02706 54 LICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAF 133 (150)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHH
Confidence 3444444 68999999885432 256778889999999999999999999999999999999999988888899
Q ss_pred HHhccCcEEcC
Q 002579 846 WTDKFGFKKID 856 (905)
Q Consensus 846 wt~kfGF~~i~ 856 (905)
|++ +||...+
T Consensus 134 y~k-~GF~~~g 143 (150)
T PLN02706 134 YEK-CGYVRKE 143 (150)
T ss_pred HHH-CcCEEeh
Confidence 998 9999764
No 14
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.67 E-value=6.4e-08 Score=106.52 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=67.3
Q ss_pred EeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCcEEcC
Q 002579 778 LTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKID 856 (905)
Q Consensus 778 L~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF~~i~ 856 (905)
...++++||++++.. .+|..|||+++|||||+|+.||+.+++.++..|+++++|.+..++.+||++ +||..++
T Consensus 11 ~~~~~~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYek-~GF~~~~ 83 (297)
T cd02169 11 FDDAGELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFRG-LGFKELA 83 (297)
T ss_pred EEECCEEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHHH-CCCEEec
Confidence 356799999998842 368999999999999999999999999999999999999999999999997 9999998
No 15
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=98.66 E-value=1.7e-07 Score=87.93 Aligned_cols=111 Identities=22% Similarity=0.271 Sum_probs=80.2
Q ss_pred HHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEeeCCeEEEEEEEEEe-----CC--eeEEEeeeE
Q 002579 732 LSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVF-----GQ--EVAELPLVA 804 (905)
Q Consensus 732 Ls~Al~If~EcFdPiid~rSgrDLIp~MVy~~~~~~~~f~Gfy~~VL~~~~~vVsaA~lri~-----g~--~vAElp~VA 804 (905)
+.+..+++.++|.+-..+. ..+.|..+. +..-++++.+.+++|||.+.+... |. .++.|--||
T Consensus 10 ~~~i~~l~~~~F~~~~~~~------~~~~~~~~~----~~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~ 79 (127)
T PF13527_consen 10 FEQIIELFNEAFGDSESPP------EIWEYFRNL----YGPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVA 79 (127)
T ss_dssp HHHHHHHHHHHTTT-CHHH------HHHHHHHHH----HHTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCCch------hhhhhhhcc----cCcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEE
Confidence 4567778888885433331 122222221 111256777889999998877554 43 589999999
Q ss_pred eecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCcEEc
Q 002579 805 TSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 855 (905)
Q Consensus 805 T~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF~~i 855 (905)
|+++|||||++++||+++++.++..|+..++|-+ ...+||.+ |||+.+
T Consensus 80 v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y~~-~G~~~~ 127 (127)
T PF13527_consen 80 VDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFYRR-FGFEYA 127 (127)
T ss_dssp E-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHHHH-TTEEEE
T ss_pred ECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhhhc-CCCEEC
Confidence 9999999999999999999999999999999877 44789988 999864
No 16
>PLN02825 amino-acid N-acetyltransferase
Probab=98.66 E-value=1.1e-07 Score=111.40 Aligned_cols=104 Identities=21% Similarity=0.304 Sum_probs=84.6
Q ss_pred EEEeeCCeEEEEEEEEEeCC-eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCcEE
Q 002579 776 AILTVNSSVVSAGILRVFGQ-EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 854 (905)
Q Consensus 776 ~VL~~~~~vVsaA~lri~g~-~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF~~ 854 (905)
+|++.||++||++.+..+.. +.+||-.+||+++|||+|+|++||+.+|+.++..|+++|+|-. ..+..||.+ +||..
T Consensus 410 ~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt-t~a~~fY~k-~GF~~ 487 (515)
T PLN02825 410 VVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT-TRTADWFVR-RGFSE 487 (515)
T ss_pred EEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe-CcHHHHHHH-CCCEE
Confidence 35689999999999877654 6899999999999999999999999999999999999999866 567899999 99999
Q ss_pred cCHHHHHHHHHhCCceeEeCCceeeeecc
Q 002579 855 IDPELLSIYRKRCSQLVTFKGTSMLQKRV 883 (905)
Q Consensus 855 i~~~~~~~~~~~~~~l~~F~gt~mLqK~l 883 (905)
.+.+++..-|+..++.- .+.-.+-|.|
T Consensus 488 ~~~~~lp~~~~~~yn~~--r~sk~~~k~l 514 (515)
T PLN02825 488 CSIESLPEARRKRINLS--RGSKYYMKKL 514 (515)
T ss_pred eChhhCCHHHHhhcCcc--CCcEEEEEec
Confidence 99988776666533321 3444444443
No 17
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.64 E-value=1.2e-07 Score=95.59 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=70.6
Q ss_pred EEEe-eCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCcEE
Q 002579 776 AILT-VNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 854 (905)
Q Consensus 776 ~VL~-~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF~~ 854 (905)
++++ .++++||.+.+.+...+.++|..++|+++|||+|+|+.||+.+++.++..|++++++... +..||++ +||+.
T Consensus 48 ~va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~k-~GF~~ 124 (169)
T PRK07922 48 WVAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFAR-HGFVE 124 (169)
T ss_pred EEEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHHH-CCCEE
Confidence 3556 889999999988877889999999999999999999999999999999999999987543 4789999 99999
Q ss_pred cCH
Q 002579 855 IDP 857 (905)
Q Consensus 855 i~~ 857 (905)
++.
T Consensus 125 ~~~ 127 (169)
T PRK07922 125 IDG 127 (169)
T ss_pred Ccc
Confidence 875
No 18
>PRK03624 putative acetyltransferase; Provisional
Probab=98.63 E-value=1.1e-07 Score=88.93 Aligned_cols=82 Identities=20% Similarity=0.167 Sum_probs=68.9
Q ss_pred EEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecch---hhHHHHHHhcc
Q 002579 774 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDKF 850 (905)
Q Consensus 774 y~~VL~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~---~~a~~~wt~kf 850 (905)
+.+++..++++||.+.+...+ ..+.+..++|+++|||||||+.|+..+++.++..|++++.+... ..+..+|++ +
T Consensus 46 ~~~v~~~~~~~vG~~~~~~~~-~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k-~ 123 (140)
T PRK03624 46 LFLVAEVGGEVVGTVMGGYDG-HRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEA-L 123 (140)
T ss_pred eEEEEEcCCcEEEEEEeeccC-CCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHH-c
Confidence 445667889999999876544 45678889999999999999999999999999999999877654 458899988 9
Q ss_pred CcEEcCH
Q 002579 851 GFKKIDP 857 (905)
Q Consensus 851 GF~~i~~ 857 (905)
||+..+.
T Consensus 124 GF~~~~~ 130 (140)
T PRK03624 124 GYEEQDR 130 (140)
T ss_pred CCccccE
Confidence 9997664
No 19
>PRK07757 acetyltransferase; Provisional
Probab=98.63 E-value=1.4e-07 Score=91.49 Aligned_cols=81 Identities=21% Similarity=0.323 Sum_probs=71.3
Q ss_pred EEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCcEEcC
Q 002579 777 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKID 856 (905)
Q Consensus 777 VL~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF~~i~ 856 (905)
++..++++||.+.+.+.+.+.++|-.|+|+++|||+|+|+.||..+++.+...|+.++++-. .+..||.+ +||+.++
T Consensus 45 i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~--~~~~~Y~k-~GF~~~~ 121 (152)
T PRK07757 45 VAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALT--YQPEFFEK-LGFREVD 121 (152)
T ss_pred EEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEe--CcHHHHHH-CCCEEcc
Confidence 44678999999999998888999999999999999999999999999999999999986543 35689999 9999998
Q ss_pred HHHH
Q 002579 857 PELL 860 (905)
Q Consensus 857 ~~~~ 860 (905)
..++
T Consensus 122 ~~~~ 125 (152)
T PRK07757 122 KEAL 125 (152)
T ss_pred cccC
Confidence 8443
No 20
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.62 E-value=2.3e-08 Score=123.51 Aligned_cols=128 Identities=23% Similarity=0.545 Sum_probs=83.2
Q ss_pred cCCCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCCCCCCCCCCcccccccccccccccccccccccccccc
Q 002579 511 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRV 590 (905)
Q Consensus 511 ~~~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~L~~vP~g~W~Cp~C~~~~~kek~v~~n~nava~Gr~ 590 (905)
...+.+|.+|.+-.+- ..+.+|+||+|..++|+.|+++.-+|+|.|+|..|....++. +....+....|.+
T Consensus 216 ~~~D~~C~iC~~~~~~-------n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~--v~c~~cp~~~gAF 286 (1051)
T KOG0955|consen 216 LEEDAVCCICLDGECQ-------NSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRP--VRCLLCPSKGGAF 286 (1051)
T ss_pred cCCCccceeecccccC-------CCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcc--cceEeccCCCCcc
Confidence 3567899999963221 357899999999999999999999999999999998654322 2222222222322
Q ss_pred cccc-----------chhhhhh---------hhhhhcccccccCCceeeccCCCCCCCCCCCCceeecC--CCCCcCCcC
Q 002579 591 SGVD-----------SVEQITK---------RCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVG 648 (905)
Q Consensus 591 ~Gvd-----------~ieqI~~---------R~iR~~kd~e~e~~~C~vC~~~df~~sg~~~~~LI~CD--qC~rayHv~ 648 (905)
...+ ++.++.- ..++.+.. ......|++|+.. +.+..|+|. .|-.+||++
T Consensus 287 kqt~dgrw~Hv~caiwipev~F~nt~~~E~I~~i~~i~~-aRwkL~cy~cK~~-------~~gaciqcs~~~c~~a~hvt 358 (1051)
T KOG0955|consen 287 KQTDDGRWAHVVCAIWIPEVSFANTVFLEPIDSIENIPP-ARWKLTCYICKQK-------GLGACIQCSKANCYTAFHVT 358 (1051)
T ss_pred eeccCCceeeeehhhcccccccccchhhccccchhcCcH-hhhhceeeeeccC-------CCCcceecchhhhhhhhhhh
Confidence 2221 1111110 01111111 1233469999975 358899998 699999999
Q ss_pred CCCcCcC
Q 002579 649 CLKKHKM 655 (905)
Q Consensus 649 CL~p~~~ 655 (905)
|....|+
T Consensus 359 ca~~agl 365 (1051)
T KOG0955|consen 359 CARRAGL 365 (1051)
T ss_pred hHhhcCc
Confidence 9988764
No 21
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.61 E-value=1.3e-08 Score=119.32 Aligned_cols=55 Identities=38% Similarity=0.905 Sum_probs=47.2
Q ss_pred cccCCceeeccCCCCCCCCCCCCceeecCCCCCc-CCcCCCCcCcCCcccCCCCCCceecCCccchh
Q 002579 611 EAELSGCLLCRGCDFSKSGFGPRTILLCDQCERE-FHVGCLKKHKMADLRELPKGKWFCCMDCSRIN 676 (905)
Q Consensus 611 e~e~~~C~vC~~~df~~sg~~~~~LI~CDqC~ra-yHv~CL~p~~~~~L~evP~g~WfCp~~C~~I~ 676 (905)
..+...|.+|..+| .+..||+||.|... ||++||+| +|.++|-+.||| .+|..+.
T Consensus 212 ~~E~~~C~IC~~~D------pEdVLLLCDsCN~~~YH~YCLDP----dl~eiP~~eWYC-~NC~dL~ 267 (1134)
T KOG0825|consen 212 SQEEVKCDICTVHD------PEDVLLLCDSCNKVYYHVYCLDP----DLSESPVNEWYC-TNCSLLE 267 (1134)
T ss_pred ccccccceeeccCC------hHHhheeecccccceeeccccCc----ccccccccceec-Ccchhhh
Confidence 34456799999886 57789999999999 99999997 799999999999 8997543
No 22
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=98.59 E-value=2.5e-08 Score=116.93 Aligned_cols=151 Identities=23% Similarity=0.483 Sum_probs=92.8
Q ss_pred ccCCCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCCCCCCCCCCcccccccccccccccccccccc----c
Q 002579 510 KNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANA----V 585 (905)
Q Consensus 510 ~~~~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~L~~vP~g~W~Cp~C~~~~~kek~v~~n~na----v 585 (905)
...+..+|.+|....+. ++.+|++||.|....|+.|+++.++|+|.|.|..|....++.-.+-++... .
T Consensus 267 e~dedviCDvCrspD~e-------~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~ 339 (893)
T KOG0954|consen 267 EYDEDVICDVCRSPDSE-------EANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPT 339 (893)
T ss_pred eccccceeceecCCCcc-------ccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCccccc
Confidence 34577899999975543 578999999999999999999999999999999997654322111111100 0
Q ss_pred ccc-ccccc---cchhhhhhhhhhhcccc--------cccCCceeeccCCCCCCCCCCCCceeecC--CCCCcCCcCCCC
Q 002579 586 EAG-RVSGV---DSVEQITKRCIRIVKNL--------EAELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLK 651 (905)
Q Consensus 586 a~G-r~~Gv---d~ieqI~~R~iR~~kd~--------e~e~~~C~vC~~~df~~sg~~~~~LI~CD--qC~rayHv~CL~ 651 (905)
..| .+..+ -||.++...+....+.+ ......|.+|+.. .+..|+|. .|...||+.|..
T Consensus 340 ~sgT~wAHvsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k--------~GACIqCs~k~C~t~fHv~CA~ 411 (893)
T KOG0954|consen 340 KSGTKWAHVSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVK--------SGACIQCSNKTCRTAFHVTCAF 411 (893)
T ss_pred CCCCeeeEeeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhccc--------CcceEEecccchhhhccchhhh
Confidence 111 11111 13333322222111111 1222359999863 57899998 799999999999
Q ss_pred cCcCCcc---cCCC--CCCceecCCccchh
Q 002579 652 KHKMADL---RELP--KGKWFCCMDCSRIN 676 (905)
Q Consensus 652 p~~~~~L---~evP--~g~WfCp~~C~~I~ 676 (905)
.+|+..- .+.. ...-|| ..|..+.
T Consensus 412 ~aG~~~~~~~~~~D~v~~~s~c-~khs~~~ 440 (893)
T KOG0954|consen 412 EAGLEMKTILKENDEVKFKSYC-SKHSDHR 440 (893)
T ss_pred hcCCeeeeeeccCCchhheeec-ccccccc
Confidence 9875321 1110 234578 5665554
No 23
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.56 E-value=1.7e-07 Score=92.55 Aligned_cols=85 Identities=24% Similarity=0.226 Sum_probs=72.5
Q ss_pred EEEEeeCCeEEEEEEEEEeCCeeEE--EeeeEeecCccCCChhHHHHHHHHHHhhhcC-ccEEEecchhhHHHHHHhccC
Q 002579 775 CAILTVNSSVVSAGILRVFGQEVAE--LPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPAAEEAESIWTDKFG 851 (905)
Q Consensus 775 ~~VL~~~~~vVsaA~lri~g~~vAE--lp~VAT~~~yRgqG~gr~L~~~IE~~L~~lg-V~~LvLpA~~~a~~~wt~kfG 851 (905)
-++...+|++|+.|+|-..+....+ |.+|+|.+++||+|+|+.||....+.+.... =+.+.|.||..++.||.. ||
T Consensus 52 l~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa~-~G 130 (155)
T COG2153 52 LLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYAS-FG 130 (155)
T ss_pred EEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHHH-hC
Confidence 3333449999999999888876666 9999999999999999999988777776665 567999999999999999 99
Q ss_pred cEEcCHHHH
Q 002579 852 FKKIDPELL 860 (905)
Q Consensus 852 F~~i~~~~~ 860 (905)
|.+.+++-+
T Consensus 131 Fv~~~e~yl 139 (155)
T COG2153 131 FVRVGEEYL 139 (155)
T ss_pred cEEcCchhh
Confidence 999998643
No 24
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.54 E-value=3.4e-07 Score=105.23 Aligned_cols=84 Identities=15% Similarity=0.258 Sum_probs=73.4
Q ss_pred EEeeCCeEEEEEEEEEeC-CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCcEEc
Q 002579 777 ILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 855 (905)
Q Consensus 777 VL~~~~~vVsaA~lri~g-~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF~~i 855 (905)
|++.++++||++.+..+. .+.++|-.++|+++|||||+|++||+.+++.++..|.++|++-+ ..+..||.+ +||+.+
T Consensus 326 V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~-~~a~~fY~k-~GF~~~ 403 (429)
T TIGR01890 326 IIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLT-TRTGHWFRE-RGFQTA 403 (429)
T ss_pred EEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEee-cchHHHHHH-CCCEEC
Confidence 457899999999998874 46899999999999999999999999999999999999987765 356899998 999999
Q ss_pred CHHHHHH
Q 002579 856 DPELLSI 862 (905)
Q Consensus 856 ~~~~~~~ 862 (905)
+..++..
T Consensus 404 g~~~l~~ 410 (429)
T TIGR01890 404 SVDELPE 410 (429)
T ss_pred ChhhCCH
Confidence 9865443
No 25
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.54 E-value=4.7e-07 Score=84.00 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=68.9
Q ss_pred EEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEec---chhhHHHHHHhccCc
Q 002579 776 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAEEAESIWTDKFGF 852 (905)
Q Consensus 776 ~VL~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLp---A~~~a~~~wt~kfGF 852 (905)
++++.++++||.+.++... ....+-.++|+++|||||+|+.|+.++++.+...|..++++. +...+..||++ +||
T Consensus 34 ~~~~~~~~~vg~~~~~~~~-~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~-~Gf 111 (131)
T TIGR01575 34 LLARIGGKVVGYAGVQIVL-DEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKK-LGF 111 (131)
T ss_pred EEEecCCeEEEEEEEEecC-CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHH-cCC
Confidence 4456789999999987644 457888899999999999999999999999999999999884 55668899999 999
Q ss_pred EEcCH
Q 002579 853 KKIDP 857 (905)
Q Consensus 853 ~~i~~ 857 (905)
+.++.
T Consensus 112 ~~~~~ 116 (131)
T TIGR01575 112 NEIAI 116 (131)
T ss_pred Ccccc
Confidence 98865
No 26
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.53 E-value=5.3e-08 Score=113.47 Aligned_cols=61 Identities=33% Similarity=0.859 Sum_probs=45.7
Q ss_pred ceeeccccccCCCc--cccccCcCCCcCcccccCCCCceEeccCCCcccccccCC----CCCCCCCCccccccccc
Q 002579 502 GQKLLEGYKNGLGI--ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS----LSSIPQGDWYCKYCQNM 571 (905)
Q Consensus 502 gq~ll~G~~~~~gi--~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~----L~~vP~g~W~Cp~C~~~ 571 (905)
++...++++.-..+ +|+-|++.. .| .+++|||+||++||+.||+ .+.+|.|.|+|+.|...
T Consensus 239 ~r~~~D~~~~~~~~~~fCsaCn~~~---~F------~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 239 KRRERDKNISVEDIEDFCSACNGSG---LF------NDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred hhhhhccccccCCHHHHHHHhCCcc---cc------ccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 34445555554444 999999621 11 3569999999999999997 35799999999999764
No 27
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.52 E-value=3.1e-07 Score=102.57 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=73.1
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCc
Q 002579 773 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 852 (905)
Q Consensus 773 fy~~VL~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF 852 (905)
-|+++++.+|++||+|++ .|. .|..|||+++|||+|+|+.||.++++.+...|+..++|.+.+....||++ +||
T Consensus 31 d~~vv~~~~~~lVg~g~l--~g~---~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~k-lGF 104 (332)
T TIGR00124 31 EIFIAVYEDEEIIGCGGI--AGN---VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFEY-CGF 104 (332)
T ss_pred CEEEEEEECCEEEEEEEE--ecC---EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHHH-cCC
Confidence 567778899999999997 343 48899999999999999999999999999999999999999999999998 999
Q ss_pred EEcCHHH
Q 002579 853 KKIDPEL 859 (905)
Q Consensus 853 ~~i~~~~ 859 (905)
..+....
T Consensus 105 ~~i~~~~ 111 (332)
T TIGR00124 105 KTLAEAK 111 (332)
T ss_pred EEeeeec
Confidence 9998643
No 28
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.51 E-value=4.6e-07 Score=92.47 Aligned_cols=80 Identities=11% Similarity=0.031 Sum_probs=70.3
Q ss_pred EEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecc---hhhHHHHHHhccCcE
Q 002579 777 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA---AEEAESIWTDKFGFK 853 (905)
Q Consensus 777 VL~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA---~~~a~~~wt~kfGF~ 853 (905)
+...+|++||.+.++......++|-.+++.++|||||+|+.|+..+++.+..+|+.+|.+.. -..|..||++ +||+
T Consensus 103 ~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~k-lGF~ 181 (191)
T TIGR02382 103 LRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIR-SGAN 181 (191)
T ss_pred EEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH-cCCc
Confidence 44568999999999877666789999999999999999999999999999999999999874 3458999998 9998
Q ss_pred EcCH
Q 002579 854 KIDP 857 (905)
Q Consensus 854 ~i~~ 857 (905)
..+.
T Consensus 182 ~~~~ 185 (191)
T TIGR02382 182 IEST 185 (191)
T ss_pred cccc
Confidence 7654
No 29
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.51 E-value=5.3e-07 Score=92.02 Aligned_cols=84 Identities=12% Similarity=0.062 Sum_probs=71.3
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecch---hhHHHHHHhc
Q 002579 773 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESIWTDK 849 (905)
Q Consensus 773 fy~~VL~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~---~~a~~~wt~k 849 (905)
++.++...++++||.+.+...+...++|-.++|.++|||||+|+.|+..+++.++..|+.++++... ..+..||++
T Consensus 102 ~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek- 180 (194)
T PRK10975 102 QCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIR- 180 (194)
T ss_pred cEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHH-
Confidence 3434445678999999998777677999999999999999999999999999999999999987643 568999988
Q ss_pred cCcEEcCH
Q 002579 850 FGFKKIDP 857 (905)
Q Consensus 850 fGF~~i~~ 857 (905)
+||+..+.
T Consensus 181 ~Gf~~~~~ 188 (194)
T PRK10975 181 SGANIEST 188 (194)
T ss_pred CCCeEeEE
Confidence 99998653
No 30
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.47 E-value=1.1e-06 Score=85.00 Aligned_cols=85 Identities=20% Similarity=0.199 Sum_probs=71.5
Q ss_pred ceEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEec---chhhHHHHHHh
Q 002579 772 GMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAEEAESIWTD 848 (905)
Q Consensus 772 Gfy~~VL~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLp---A~~~a~~~wt~ 848 (905)
+++..++..++++||.+.++.... .+++-.++|.++|||||+|+.|+..+++.+...|+..+++. .-..+..+|++
T Consensus 39 ~~~~~~~~~~~~~vG~~~~~~~~~-~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k 117 (146)
T PRK09491 39 RYLNLKLTVNGQMAAFAITQVVLD-EATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYES 117 (146)
T ss_pred CceEEEEEECCeEEEEEEEEeecC-ceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHH
Confidence 455556678899999999876654 46678899999999999999999999999999999988875 45578999999
Q ss_pred ccCcEEcCHH
Q 002579 849 KFGFKKIDPE 858 (905)
Q Consensus 849 kfGF~~i~~~ 858 (905)
+||+..+..
T Consensus 118 -~Gf~~~~~~ 126 (146)
T PRK09491 118 -LGFNEVTIR 126 (146)
T ss_pred -cCCEEeeee
Confidence 999987753
No 31
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.45 E-value=6.5e-07 Score=103.12 Aligned_cols=85 Identities=18% Similarity=0.267 Sum_probs=73.3
Q ss_pred EEEeeCCeEEEEEEEEEeC-CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCcEE
Q 002579 776 AILTVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 854 (905)
Q Consensus 776 ~VL~~~~~vVsaA~lri~g-~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF~~ 854 (905)
++++.++++||.+.+..+. ...++|-.++|+++|||||+|++||+.+++.++..|+.++++-+ ..|..||++ +||+.
T Consensus 337 ~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~k-~GF~~ 414 (441)
T PRK05279 337 TVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFLE-RGFVP 414 (441)
T ss_pred EEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHHH-CcCEE
Confidence 3557899999999877654 36899999999999999999999999999999999999998765 468999998 99999
Q ss_pred cCHHHHHH
Q 002579 855 IDPELLSI 862 (905)
Q Consensus 855 i~~~~~~~ 862 (905)
++..++..
T Consensus 415 ~g~~~~~~ 422 (441)
T PRK05279 415 VDVDDLPE 422 (441)
T ss_pred CChhhCcH
Confidence 99855443
No 32
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=98.44 E-value=3.2e-07 Score=92.30 Aligned_cols=60 Identities=25% Similarity=0.627 Sum_probs=41.9
Q ss_pred cccccCcCCCcCcccccCCCCceEeccCCCcccccccCCC--------CCCCCCC--ccccccccccccccccccc
Q 002579 516 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASL--------SSIPQGD--WYCKYCQNMFERKRFLQHD 581 (905)
Q Consensus 516 ~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~L--------~~vP~g~--W~Cp~C~~~~~kek~v~~n 581 (905)
.|..|......+ ..|.|+.|.||-.+||..||+. +.|.++. ..|..|..-.+++...++.
T Consensus 1 ~C~~C~~~g~~~------~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~ 70 (175)
T PF15446_consen 1 TCDTCGYEGDDR------NKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPH 70 (175)
T ss_pred CcccccCCCCCc------cCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCC
Confidence 377786432222 5789999999999999999983 3455444 7899997766555555543
No 33
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.43 E-value=6.2e-07 Score=107.52 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=73.5
Q ss_pred EEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCcEEc
Q 002579 776 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 855 (905)
Q Consensus 776 ~VL~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF~~i 855 (905)
+|++.+|++||.+.+...+.+.++|-.++|+++|||||+|+.||+.+++.++..|++.|+|.. .+..||++ +||+..
T Consensus 506 ~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~--~a~~FYek-~GF~~~ 582 (614)
T PRK12308 506 AVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLT--RVPEFFMK-QGFSPT 582 (614)
T ss_pred EEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEee--CcHHHHHH-CCCEEC
Confidence 456789999999999887777899999999999999999999999999999999999998865 35799998 999999
Q ss_pred CHHHH
Q 002579 856 DPELL 860 (905)
Q Consensus 856 ~~~~~ 860 (905)
+...+
T Consensus 583 ~~~~~ 587 (614)
T PRK12308 583 SKSLL 587 (614)
T ss_pred CcccC
Confidence 98654
No 34
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=98.41 E-value=8.4e-07 Score=95.55 Aligned_cols=84 Identities=15% Similarity=0.146 Sum_probs=71.1
Q ss_pred eEEEEEeeCCeEEEEEEEEEe-CCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhh---HHHHHHh
Q 002579 773 MYCAILTVNSSVVSAGILRVF-GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE---AESIWTD 848 (905)
Q Consensus 773 fy~~VL~~~~~vVsaA~lri~-g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~---a~~~wt~ 848 (905)
.+.++++.+|++||.+.+.+. +...+||--++|+|+|||||+|+.||..+++.++..|++++++.+... +..+|.+
T Consensus 158 ~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k 237 (266)
T TIGR03827 158 VVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFAR 237 (266)
T ss_pred cEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHHH
Confidence 344556789999999997543 346799999999999999999999999999999999999999887665 4668887
Q ss_pred ccCcEEcCH
Q 002579 849 KFGFKKIDP 857 (905)
Q Consensus 849 kfGF~~i~~ 857 (905)
+||+..+.
T Consensus 238 -~GF~~~G~ 245 (266)
T TIGR03827 238 -LGYAYGGT 245 (266)
T ss_pred -cCCccccE
Confidence 99998765
No 35
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.38 E-value=1.6e-07 Score=112.45 Aligned_cols=156 Identities=26% Similarity=0.491 Sum_probs=101.2
Q ss_pred CCCcccccccCC--CCCCCCCCccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCceeec
Q 002579 543 GCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLC 620 (905)
Q Consensus 543 gC~~afH~~CL~--L~~vP~g~W~Cp~C~~~~~kek~v~~n~nava~Gr~~Gvd~ieqI~~R~iR~~kd~e~e~~~C~vC 620 (905)
.|+++||..|++ +..-|+++|.||.|...... +...++ .....+...|.+|
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~------------------~~~~~~---------~~~~~~~e~c~ic 53 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQ------------------VEAKDD---------DWDDAEQEACRIC 53 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhcccc------------------cccccC---------Ccchhhhhhhhhh
Confidence 489999999997 55667899999999742110 000000 0023345679999
Q ss_pred cCCCCCCCCCCCCceeecCCCCCcCCcCCCCcCcCCcccCCCCCCceecCCccc--hhHHHHHhhhhc--cccCc-hhhh
Q 002579 621 RGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR--INSVLQNLLVQE--AEKLP-EFHL 695 (905)
Q Consensus 621 ~~~df~~sg~~~~~LI~CDqC~rayHv~CL~p~~~~~L~evP~g~WfCp~~C~~--I~~~Lq~Lv~~g--~e~lp-~sll 695 (905)
+. .+++|.||.|..+||..|+.+ ++...|.+.|.|+ .|.. .....++++.+. +.+.+ ...-
T Consensus 54 ~~---------~g~~l~c~tC~~s~h~~cl~~----pl~~~p~~~~~c~-Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~ 119 (696)
T KOG0383|consen 54 AD---------GGELLWCDTCPASFHASCLGP----PLTPQPNGEFICP-RCFCPKNAGKIEKILGWRWKPTPKPREGNQ 119 (696)
T ss_pred cC---------CCcEEEeccccHHHHHHccCC----CCCcCCccceeee-eeccCCCcccccccceeEecCCCCccccCc
Confidence 95 468999999999999999987 6778888889994 7832 222445555543 22222 1111
Q ss_pred hhhhhhccCccccccccCcceeEccCCCCChhhHHHHHHHHHhhh
Q 002579 696 NAIKKYAGNSLETVSDIDVRWRLLSGKAATPETRLLLSQAVAIFH 740 (905)
Q Consensus 696 ~~I~k~~e~gle~~~~~dikWqlLsgk~~s~e~~~kLs~Al~If~ 740 (905)
+.+.-+... .-..+++.++|+.+++.++.|.....+...+..+-
T Consensus 120 ~~~~~~~~~-~~~~re~~vk~qg~s~~~c~~~~e~~~q~~~~~~~ 163 (696)
T KOG0383|consen 120 GVISPRRSN-GIVEREFFVKWQGLSYWHCSWKSELLLQNPLNTLP 163 (696)
T ss_pred CccCCcccc-cchhhhcccccccCCccchhHHHHHHhhhhcccch
Confidence 112111111 12356789999999999999888777766555554
No 36
>PRK13688 hypothetical protein; Provisional
Probab=98.36 E-value=1.6e-06 Score=87.22 Aligned_cols=75 Identities=19% Similarity=0.283 Sum_probs=59.8
Q ss_pred EeeCCeEEEEEEEEEe----------CCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHH
Q 002579 778 LTVNSSVVSAGILRVF----------GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWT 847 (905)
Q Consensus 778 L~~~~~vVsaA~lri~----------g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt 847 (905)
++.++++||.+.+... ..+.++|-.++|+++|||||+|++||+.+++. ++. +.+.+...|..||.
T Consensus 50 ~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~~----~~~-~~~~~~~~a~~FY~ 124 (156)
T PRK13688 50 IYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKSF----QLP-IKTIARNKSKDFWL 124 (156)
T ss_pred EEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHh----CCe-EEEEeccchHHHHH
Confidence 4678999998887542 24678999999999999999999999876543 443 44556778999999
Q ss_pred hccCcEEcCHH
Q 002579 848 DKFGFKKIDPE 858 (905)
Q Consensus 848 ~kfGF~~i~~~ 858 (905)
+ +||..++..
T Consensus 125 k-~GF~~~~~~ 134 (156)
T PRK13688 125 K-LGFTPVEYK 134 (156)
T ss_pred h-CCCEEeEEe
Confidence 9 999988765
No 37
>PRK09831 putative acyltransferase; Provisional
Probab=98.34 E-value=1.5e-06 Score=84.73 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=62.0
Q ss_pred EEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCcEEc
Q 002579 776 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 855 (905)
Q Consensus 776 ~VL~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF~~i 855 (905)
+|+..+|++||.+.+.. +.+..++|+++|||||+|++||..+++.+.. +.+.+...|..||.+ +||..+
T Consensus 56 ~v~~~~~~iiG~~~~~~-----~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~k-~Gf~~~ 124 (147)
T PRK09831 56 RVAVINAQPVGFITCIE-----HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFER-YGFQTV 124 (147)
T ss_pred EEEEECCEEEEEEEehh-----ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHHH-CCCEEe
Confidence 34578899999988742 4677899999999999999999999998765 566677789999999 999999
Q ss_pred CHHH
Q 002579 856 DPEL 859 (905)
Q Consensus 856 ~~~~ 859 (905)
+...
T Consensus 125 g~~~ 128 (147)
T PRK09831 125 KQQR 128 (147)
T ss_pred eccc
Confidence 8865
No 38
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.32 E-value=3.3e-06 Score=81.94 Aligned_cols=85 Identities=18% Similarity=0.242 Sum_probs=68.7
Q ss_pred eEEEEEeeCCeEEEEEEEEEeC----CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhh-cCccEEEecc---hhhHHH
Q 002579 773 MYCAILTVNSSVVSAGILRVFG----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPA---AEEAES 844 (905)
Q Consensus 773 fy~~VL~~~~~vVsaA~lri~g----~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~-lgV~~LvLpA---~~~a~~ 844 (905)
.+.++...++++||.+.+.... ...+++. ++++++|||||+|+.|++.+++.+.. +|..++++.. -..|..
T Consensus 51 ~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~ 129 (162)
T PRK10140 51 IKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIK 129 (162)
T ss_pred cEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHH
Confidence 3556667889999999987542 2456664 89999999999999999999999888 7988877654 457899
Q ss_pred HHHhccCcEEcCHHH
Q 002579 845 IWTDKFGFKKIDPEL 859 (905)
Q Consensus 845 ~wt~kfGF~~i~~~~ 859 (905)
||++ +||+..+...
T Consensus 130 ~y~k-~GF~~~g~~~ 143 (162)
T PRK10140 130 VYKK-YGFEIEGTGK 143 (162)
T ss_pred HHHH-CCCEEEeecc
Confidence 9998 9999887743
No 39
>PHA00673 acetyltransferase domain containing protein
Probab=98.31 E-value=3.9e-06 Score=84.45 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=72.7
Q ss_pred eEEEEEeeCCeEEEEEEEEEeC------CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhh--HHH
Q 002579 773 MYCAILTVNSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE--AES 844 (905)
Q Consensus 773 fy~~VL~~~~~vVsaA~lri~g------~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~--a~~ 844 (905)
-..+|.+.+|++||++.+.+.. ...+.|-.|-|++++||||+|++||..+|+.++..|...|.+.|.++ .+.
T Consensus 55 ~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 55 AHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred cEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 3445667799999999887655 35678999999999999999999999999999999999999999886 799
Q ss_pred HHHhccCcEEcC
Q 002579 845 IWTDKFGFKKID 856 (905)
Q Consensus 845 ~wt~kfGF~~i~ 856 (905)
||.+ .|++...
T Consensus 135 fy~~-~g~~~~~ 145 (154)
T PHA00673 135 LLPA-AGYRETN 145 (154)
T ss_pred HHHh-CCchhhc
Confidence 9999 9998644
No 40
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.29 E-value=5e-07 Score=105.50 Aligned_cols=50 Identities=38% Similarity=0.996 Sum_probs=41.6
Q ss_pred ceeeccCCCCCCCCCCCCceeecCCCCCcCCcCCCCcCcCCcccCCCCCCceecCCccc
Q 002579 616 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 674 (905)
Q Consensus 616 ~C~vC~~~df~~sg~~~~~LI~CDqC~rayHv~CL~p~~~~~L~evP~g~WfCp~~C~~ 674 (905)
+|..|++.+ .| ..+|+||.|++.||..||.|+ + ..+.+|.|.||| +.|..
T Consensus 255 fCsaCn~~~----~F--~~~i~CD~Cp~sFH~~CLePP-l-~~eniP~g~W~C-~ec~~ 304 (613)
T KOG4299|consen 255 FCSACNGSG----LF--NDIICCDGCPRSFHQTCLEPP-L-EPENIPPGSWFC-PECKI 304 (613)
T ss_pred HHHHhCCcc----cc--ccceeecCCchHHHHhhcCCC-C-CcccCCCCcccc-CCCee
Confidence 799999764 23 678999999999999999984 1 367899999999 78863
No 41
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.18 E-value=9.9e-06 Score=87.23 Aligned_cols=81 Identities=7% Similarity=0.000 Sum_probs=65.2
Q ss_pred EEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecch-hhHHHHHHhccCc
Q 002579 774 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA-EEAESIWTDKFGF 852 (905)
Q Consensus 774 y~~VL~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~-~~a~~~wt~kfGF 852 (905)
+.+|...++++||.+.+.......+++-.++|+++|||||+|++||+.+++.+. +--.|++... ..|..||.+ +||
T Consensus 47 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~~-~Gf 123 (292)
T TIGR03448 47 RHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALASR-LGL 123 (292)
T ss_pred eEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHHH-CCC
Confidence 344556889999999988876556788899999999999999999999999865 2234555543 578999999 999
Q ss_pred EEcCH
Q 002579 853 KKIDP 857 (905)
Q Consensus 853 ~~i~~ 857 (905)
+.+..
T Consensus 124 ~~~~~ 128 (292)
T TIGR03448 124 VPTRE 128 (292)
T ss_pred EEccE
Confidence 88765
No 42
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.15 E-value=8.1e-06 Score=87.90 Aligned_cols=86 Identities=16% Similarity=0.220 Sum_probs=68.3
Q ss_pred cceEEEEEeeCCeEEEEEEEEEeCC--eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecch---hhHHHH
Q 002579 771 GGMYCAILTVNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA---EEAESI 845 (905)
Q Consensus 771 ~Gfy~~VL~~~~~vVsaA~lri~g~--~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~---~~a~~~ 845 (905)
.++|.++-..+|++||.+.+.+... +.+++-.++|+++|||||+|+.||..+++.++..|+..+.+... ..|..|
T Consensus 198 ~~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~ 277 (292)
T TIGR03448 198 AGLFLAFDDAPGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRT 277 (292)
T ss_pred CceEEEEECCCCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHH
Confidence 3455443222689999876666542 46888889999999999999999999999999999998877653 468999
Q ss_pred HHhccCcEEcCH
Q 002579 846 WTDKFGFKKIDP 857 (905)
Q Consensus 846 wt~kfGF~~i~~ 857 (905)
|++ +||+....
T Consensus 278 y~k-~GF~~~~~ 288 (292)
T TIGR03448 278 YEK-LGFTVAEV 288 (292)
T ss_pred HHH-cCCEEccc
Confidence 999 99998653
No 43
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.15 E-value=7.3e-06 Score=80.32 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=74.4
Q ss_pred eEEEEEee--CCeEEEEEEEEEeC------CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHH
Q 002579 773 MYCAILTV--NSSVVSAGILRVFG------QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAES 844 (905)
Q Consensus 773 fy~~VL~~--~~~vVsaA~lri~g------~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~ 844 (905)
+|.+|++. .++||++|+|.|.- ..-.+|.=|+|+++||||++|+.|+..+-.++.++|+=.+.|.-.++..+
T Consensus 53 Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~ 132 (150)
T KOG3396|consen 53 YYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVK 132 (150)
T ss_pred EEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhh
Confidence 78888885 48999999997643 23568888999999999999999999999999999999999999999999
Q ss_pred HHHhccCcEEcC
Q 002579 845 IWTDKFGFKKID 856 (905)
Q Consensus 845 ~wt~kfGF~~i~ 856 (905)
||++ |||+..+
T Consensus 133 FYeK-cG~s~~~ 143 (150)
T KOG3396|consen 133 FYEK-CGYSNAG 143 (150)
T ss_pred HHHH-cCccccc
Confidence 9999 9999766
No 44
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=98.14 E-value=1.3e-05 Score=80.78 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=62.5
Q ss_pred EEEEEEEEEeCC---eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecc---hhhHHHHHHhccCcEEcCH
Q 002579 784 VVSAGILRVFGQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA---AEEAESIWTDKFGFKKIDP 857 (905)
Q Consensus 784 vVsaA~lri~g~---~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA---~~~a~~~wt~kfGF~~i~~ 857 (905)
.|||........ .-++|-.+||+++|||||+|++|+..+.+.+++.|...++|.. ...|..+|++ |||.+...
T Consensus 68 ~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~s-LGF~r~~r 146 (165)
T KOG3139|consen 68 TVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYES-LGFKRDKR 146 (165)
T ss_pred eEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHh-cCceEecc
Confidence 577666554332 4599999999999999999999999999999999999999986 4569999999 99998765
No 45
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.14 E-value=9.3e-07 Score=103.53 Aligned_cols=80 Identities=31% Similarity=0.879 Sum_probs=65.0
Q ss_pred CCCceEeccCCCcccccccCCC--CC-CCCCCccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc
Q 002579 534 DGGNLLPCDGCPRAFHKECASL--SS-IPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNL 610 (905)
Q Consensus 534 dgG~LL~CDgC~~afH~~CL~L--~~-vP~g~W~Cp~C~~~~~kek~v~~n~nava~Gr~~Gvd~ieqI~~R~iR~~kd~ 610 (905)
-.|.|+.|..|...||.+|+.+ .. +-.+-|.|+.|+.
T Consensus 31 ~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv---------------------------------------- 70 (694)
T KOG4443|consen 31 RAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV---------------------------------------- 70 (694)
T ss_pred ccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee----------------------------------------
Confidence 3567999999999999999962 11 1234499999983
Q ss_pred cccCCceeeccCCCCCCCCCCCCceeecCCCCCcCCcCCCCcCcCCcccCCCCCCceec
Q 002579 611 EAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCC 669 (905)
Q Consensus 611 e~e~~~C~vC~~~df~~sg~~~~~LI~CDqC~rayHv~CL~p~~~~~L~evP~g~WfCp 669 (905)
|..|+.. -++...++|+.|+-.||.+|..| +++.+|.+.|+|+
T Consensus 71 ------Ce~c~~~------gD~~kf~~Ck~cDvsyh~yc~~P----~~~~v~sg~~~ck 113 (694)
T KOG4443|consen 71 ------CEACGTT------GDPKKFLLCKRCDVSYHCYCQKP----PNDKVPSGPWLCK 113 (694)
T ss_pred ------eeecccc------CCcccccccccccccccccccCC----ccccccCcccccH
Confidence 7778743 26788999999999999999987 6889999999993
No 46
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=98.12 E-value=1.1e-05 Score=80.09 Aligned_cols=83 Identities=12% Similarity=0.091 Sum_probs=66.1
Q ss_pred EEEEEe-eCCeEEEEEEEEE--eCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEec---chhhHHHHHH
Q 002579 774 YCAILT-VNSSVVSAGILRV--FGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAEEAESIWT 847 (905)
Q Consensus 774 y~~VL~-~~~~vVsaA~lri--~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLp---A~~~a~~~wt 847 (905)
+++|.+ .++++||.+.+.. ...+.+.+-.+||+++|||||+|+.|+..+++.+...++.+|.+. .-..|..+|+
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~ 119 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFK 119 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHH
Confidence 344556 4679999876533 234578899999999999999999999999999999888887765 4556889999
Q ss_pred hccCcEEcCH
Q 002579 848 DKFGFKKIDP 857 (905)
Q Consensus 848 ~kfGF~~i~~ 857 (905)
+ +||+....
T Consensus 120 k-~G~~~~~~ 128 (157)
T TIGR02406 120 A-LARRRGVH 128 (157)
T ss_pred H-hCcccCCC
Confidence 8 99977444
No 47
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=98.09 E-value=1.5e-05 Score=78.53 Aligned_cols=76 Identities=22% Similarity=0.251 Sum_probs=63.4
Q ss_pred eEEEEEEEE-EeCC----eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCc-cEEEecchh---hHHHHHHhccCcE
Q 002579 783 SVVSAGILR-VFGQ----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRV-KSIVLPAAE---EAESIWTDKFGFK 853 (905)
Q Consensus 783 ~vVsaA~lr-i~g~----~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV-~~LvLpA~~---~a~~~wt~kfGF~ 853 (905)
+++|....+ +.+. ..++|-.+||+|+|||+|+|++|++.+++.+...+. +.++|-... .|..+|.+ +||+
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~-~GF~ 150 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRK-LGFE 150 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHH-cCCE
Confidence 477877775 3342 279999999999999999999999999999999986 788777654 58999999 9999
Q ss_pred EcCHHH
Q 002579 854 KIDPEL 859 (905)
Q Consensus 854 ~i~~~~ 859 (905)
.+....
T Consensus 151 ~~~~~~ 156 (177)
T COG0456 151 VVKIRK 156 (177)
T ss_pred EEeeeh
Confidence 987644
No 48
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=98.06 E-value=2.8e-05 Score=75.39 Aligned_cols=76 Identities=22% Similarity=0.280 Sum_probs=63.4
Q ss_pred eCCeEEEEEEEEEeCC--eeEEEeeeEeecCccCCChhHHHHHHHHHHh-hhcCccEEEecc---hhhHHHHHHhccCcE
Q 002579 780 VNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLL-SFLRVKSIVLPA---AEEAESIWTDKFGFK 853 (905)
Q Consensus 780 ~~~~vVsaA~lri~g~--~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L-~~lgV~~LvLpA---~~~a~~~wt~kfGF~ 853 (905)
.+|++||.+.++.... ..+++- +-+.++||++|+|+.|+..+++.+ ..+|+++|.+.. -..+..||++ +||+
T Consensus 58 ~~g~iiG~~~~~~~~~~~~~~~~~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~-~GF~ 135 (155)
T PF13420_consen 58 EDGKIIGYVSLRDIDPYNHTAELS-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKK-LGFE 135 (155)
T ss_dssp CTTEEEEEEEEEESSSGTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHH-TTEE
T ss_pred cCCcEEEEEEEEeeeccCCEEEEe-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHh-CCCE
Confidence 5999999999986553 578887 445599999999999999999999 999999987543 4568999999 9999
Q ss_pred EcCH
Q 002579 854 KIDP 857 (905)
Q Consensus 854 ~i~~ 857 (905)
..+.
T Consensus 136 ~~g~ 139 (155)
T PF13420_consen 136 EEGE 139 (155)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8765
No 49
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.04 E-value=1.8e-05 Score=94.03 Aligned_cols=85 Identities=12% Similarity=0.131 Sum_probs=67.8
Q ss_pred ceEEEEEee--CCeEEEEEEEEEe------CCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEec---chh
Q 002579 772 GMYCAILTV--NSSVVSAGILRVF------GQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP---AAE 840 (905)
Q Consensus 772 Gfy~~VL~~--~~~vVsaA~lri~------g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLp---A~~ 840 (905)
+.+.+|.+. +|++||.+....+ +...++|-.|+|+++|||||+|++||..+++.++..|+.+++|. .-.
T Consensus 122 ~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~ 201 (547)
T TIGR03103 122 AITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNE 201 (547)
T ss_pred CceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCH
Confidence 344455553 6999999875332 12347888999999999999999999999999999999998764 446
Q ss_pred hHHHHHHhccCcEEcCH
Q 002579 841 EAESIWTDKFGFKKIDP 857 (905)
Q Consensus 841 ~a~~~wt~kfGF~~i~~ 857 (905)
.|..||.+ +||+.++.
T Consensus 202 ~Ai~fY~k-lGf~~~~~ 217 (547)
T TIGR03103 202 QAIALYEK-LGFRRIPV 217 (547)
T ss_pred HHHHHHHH-CCCEEeeE
Confidence 79999998 99987654
No 50
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.03 E-value=2.4e-05 Score=61.97 Aligned_cols=61 Identities=20% Similarity=0.117 Sum_probs=55.0
Q ss_pred EEEeeCCeEEEEEEEEEeC--CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEe
Q 002579 776 AILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVL 836 (905)
Q Consensus 776 ~VL~~~~~vVsaA~lri~g--~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvL 836 (905)
+++..++++||.+.+.... ...++|-.++|+++|||+|+++.||..+.+.+...|.+++++
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 3456789999999988876 478999999999999999999999999999999999999885
No 51
>PRK01346 hypothetical protein; Provisional
Probab=98.00 E-value=2.2e-05 Score=89.19 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=68.0
Q ss_pred EEEEeeCCeEEEEEEEEEe------CC--eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHH
Q 002579 775 CAILTVNSSVVSAGILRVF------GQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIW 846 (905)
Q Consensus 775 ~~VL~~~~~vVsaA~lri~------g~--~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~w 846 (905)
+++.+.++++||.+.+..+ |. ..+.|-.|||+|+|||||+|++||..+++.++..|+..++|.+.. ..||
T Consensus 49 ~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y 126 (411)
T PRK01346 49 TLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIY 126 (411)
T ss_pred eEEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhH
Confidence 3556789999999887543 32 478999999999999999999999999999999999988888765 4799
Q ss_pred HhccCcEEcCH
Q 002579 847 TDKFGFKKIDP 857 (905)
Q Consensus 847 t~kfGF~~i~~ 857 (905)
.+ |||.....
T Consensus 127 ~r-~Gf~~~~~ 136 (411)
T PRK01346 127 GR-FGYGPATY 136 (411)
T ss_pred hh-CCCeeccc
Confidence 98 99987765
No 52
>PHA01807 hypothetical protein
Probab=97.98 E-value=1.9e-05 Score=79.30 Aligned_cols=75 Identities=7% Similarity=-0.017 Sum_probs=60.6
Q ss_pred EEEEEeeCCeEEEEEEEEEeCC----eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchh---hHHHHH
Q 002579 774 YCAILTVNSSVVSAGILRVFGQ----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAE---EAESIW 846 (905)
Q Consensus 774 y~~VL~~~~~vVsaA~lri~g~----~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~---~a~~~w 846 (905)
+.++++.+|++||.+.+..... .+.+|..+.|+++|||+|+|+.||+.+++.++..|+..|+|-... .|..+|
T Consensus 54 ~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y 133 (153)
T PHA01807 54 TELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHY 133 (153)
T ss_pred eEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHH
Confidence 3355678999999999865442 234455579999999999999999999999999999999887544 478888
Q ss_pred Hh
Q 002579 847 TD 848 (905)
Q Consensus 847 t~ 848 (905)
.+
T Consensus 134 ~~ 135 (153)
T PHA01807 134 RR 135 (153)
T ss_pred Hh
Confidence 87
No 53
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=97.98 E-value=3.3e-05 Score=70.09 Aligned_cols=75 Identities=16% Similarity=0.207 Sum_probs=56.3
Q ss_pred CCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEE-Eec-chhhHHHHHHhccCcEEcCH
Q 002579 781 NSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSI-VLP-AAEEAESIWTDKFGFKKIDP 857 (905)
Q Consensus 781 ~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~L-vLp-A~~~a~~~wt~kfGF~~i~~ 857 (905)
+++.+..+.-.+..+. ++|-.|.|.|+|||+|||+.|+.++.+.+...|..-+ ++. .-..+..+|++ +||+.+.+
T Consensus 6 ~~~~~~l~~~~~~~~~-g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 6 DGELVALVAWIIRSDD-GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp CTCCEEEEEEEEESCT-CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHHH-CT-EEEEE
T ss_pred ECCccceeeEeeeCCC-cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH-cCCEEEEE
Confidence 3455555555555555 9999999999999999999999999999888887653 333 34468999999 99998754
No 54
>PRK10562 putative acetyltransferase; Provisional
Probab=97.93 E-value=3.8e-05 Score=74.37 Aligned_cols=76 Identities=11% Similarity=0.103 Sum_probs=59.1
Q ss_pred EEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCcEEc
Q 002579 776 AILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 855 (905)
Q Consensus 776 ~VL~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF~~i 855 (905)
+++..+|++||.+.+... ..+..++|+++|||+|||+.||..+++.+..+.+ .+...-..+..||++ +||+.+
T Consensus 51 ~v~~~~~~~iG~~~~~~~----~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~--~v~~~N~~s~~~y~k-~Gf~~~ 123 (145)
T PRK10562 51 WVWEEDGKLLGFVSVLEG----RFVGALFVAPKAVRRGIGKALMQHVQQRYPHLSL--EVYQKNQRAVNFYHA-QGFRIV 123 (145)
T ss_pred EEEEECCEEEEEEEEeec----cEEEEEEECHHHcCCCHHHHHHHHHHhhCCeEEE--EEEcCChHHHHHHHH-CCCEEc
Confidence 345677899999887432 4577899999999999999999999997654332 233455678999999 999998
Q ss_pred CHH
Q 002579 856 DPE 858 (905)
Q Consensus 856 ~~~ 858 (905)
+..
T Consensus 124 ~~~ 126 (145)
T PRK10562 124 DSA 126 (145)
T ss_pred ccc
Confidence 863
No 55
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.92 E-value=1.4e-06 Score=71.03 Aligned_cols=48 Identities=29% Similarity=0.894 Sum_probs=36.5
Q ss_pred eeeccCCCCCCCCCCCCceeecCCCCCcCCcCCCCcCcCCcccCCCCCCceecCCcc
Q 002579 617 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 673 (905)
Q Consensus 617 C~vC~~~df~~sg~~~~~LI~CDqC~rayHv~CL~p~~~~~L~evP~g~WfCp~~C~ 673 (905)
|.+|+.. ...+.+|+||.|.++||..|+.++.. ....+.+.|+| +.|.
T Consensus 2 C~vC~~~------~~~~~~i~C~~C~~~~H~~C~~~~~~--~~~~~~~~w~C-~~C~ 49 (51)
T PF00628_consen 2 CPVCGQS------DDDGDMIQCDSCNRWYHQECVGPPEK--AEEIPSGDWYC-PNCR 49 (51)
T ss_dssp BTTTTSS------CTTSSEEEBSTTSCEEETTTSTSSHS--HHSHHSSSBSS-HHHH
T ss_pred CcCCCCc------CCCCCeEEcCCCChhhCcccCCCChh--hccCCCCcEEC-cCCc
Confidence 7889874 26789999999999999999987531 12334559999 6674
No 56
>PRK10514 putative acetyltransferase; Provisional
Probab=97.91 E-value=4.8e-05 Score=73.04 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=58.0
Q ss_pred eeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCcEEcCHH
Q 002579 779 TVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDPE 858 (905)
Q Consensus 779 ~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF~~i~~~ 858 (905)
..++++||.+.+.- .++..++++++|||||+|++||+.+++.+.. +...+...-..+..||++ +||+..+..
T Consensus 56 ~~~~~~iG~~~~~~-----~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~--i~~~v~~~N~~a~~~yek-~Gf~~~~~~ 127 (145)
T PRK10514 56 DERDQPVGFMLLSG-----GHMEALFVDPDVRGCGVGRMLVEHALSLHPE--LTTDVNEQNEQAVGFYKK-MGFKVTGRS 127 (145)
T ss_pred ecCCcEEEEEEEec-----CcEeEEEECHHhccCCHHHHHHHHHHHhccc--cEEEeecCCHHHHHHHHH-CCCEEeccc
Confidence 46789999887642 3456799999999999999999999997643 344455556789999998 999998764
Q ss_pred H
Q 002579 859 L 859 (905)
Q Consensus 859 ~ 859 (905)
.
T Consensus 128 ~ 128 (145)
T PRK10514 128 E 128 (145)
T ss_pred c
Confidence 4
No 57
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=97.90 E-value=6.2e-05 Score=75.79 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=66.7
Q ss_pred EEEEeeCCeEEEEEEEEEeC--CeeEEEeeeEeecCccCCChhHHHHHHHHHHhh-hcCccEEEecc---hhhHHHHHHh
Q 002579 775 CAILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLPA---AEEAESIWTD 848 (905)
Q Consensus 775 ~~VL~~~~~vVsaA~lri~g--~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~-~lgV~~LvLpA---~~~a~~~wt~ 848 (905)
.++++.+|++||.+.+.... ...+++- ++++++|||+|+|+.|+..+.+.+. .+|+++|++.. -..+..+|.+
T Consensus 59 ~~~i~~~g~~iG~~~~~~~~~~~~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek 137 (186)
T PRK15130 59 RFVVECDGEKAGLVELVEINHVHRRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRK 137 (186)
T ss_pred EEEEEECCEEEEEEEEEeecCCCCeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHH
Confidence 44557899999999886553 3467774 8999999999999999999998875 68999998864 3468999999
Q ss_pred ccCcEEcCH
Q 002579 849 KFGFKKIDP 857 (905)
Q Consensus 849 kfGF~~i~~ 857 (905)
+||+.++.
T Consensus 138 -~GF~~~~~ 145 (186)
T PRK15130 138 -LGFEVEGE 145 (186)
T ss_pred -CCCEEEEE
Confidence 99998865
No 58
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=97.87 E-value=9.1e-05 Score=72.07 Aligned_cols=87 Identities=15% Similarity=0.114 Sum_probs=68.5
Q ss_pred cceEEEEEeeCCeEEEEEEEEE------eCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhc-CccEEEecchh---
Q 002579 771 GGMYCAILTVNSSVVSAGILRV------FGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAE--- 840 (905)
Q Consensus 771 ~Gfy~~VL~~~~~vVsaA~lri------~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~l-gV~~LvLpA~~--- 840 (905)
.+.+.+|++.+|++||.+.+.- .....+.+-.+++.++|||||+|+.+|.++.+.+..- +++++++.-..
T Consensus 46 ~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~ 125 (152)
T PF13523_consen 46 PGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNT 125 (152)
T ss_dssp TTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-H
T ss_pred CCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCH
Confidence 4577888899999999887642 1345777899999999999999999999999887765 89999988655
Q ss_pred hHHHHHHhccCcEEcCHH
Q 002579 841 EAESIWTDKFGFKKIDPE 858 (905)
Q Consensus 841 ~a~~~wt~kfGF~~i~~~ 858 (905)
-+..+|++ +||+.+++-
T Consensus 126 ~~~~~~~k-~GF~~~g~~ 142 (152)
T PF13523_consen 126 RAIRLYEK-AGFRKVGEF 142 (152)
T ss_dssp HHHHHHHH-TT-EEEEEE
T ss_pred HHHHHHHH-cCCEEeeEE
Confidence 57888887 999988753
No 59
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.87 E-value=5.3e-05 Score=84.01 Aligned_cols=82 Identities=11% Similarity=0.026 Sum_probs=69.2
Q ss_pred ceEEEEEee---CCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecch-----hhHH
Q 002579 772 GMYCAILTV---NSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA-----EEAE 843 (905)
Q Consensus 772 Gfy~~VL~~---~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~-----~~a~ 843 (905)
..|++.+.. ++.+||.+.++..+ +.++|-.+++++.|||+|+|++||..+++.++..|+.+|+|... ..|.
T Consensus 230 ~~~~~~~~d~~gd~givG~~~~~~~~-~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~ 308 (320)
T TIGR01686 230 EIVTVSMSDRFGDSGIIGIFVFEKKE-GNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFL 308 (320)
T ss_pred CEEEEEEEecCCCCceEEEEEEEecC-CcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHH
Confidence 356555543 57899999987654 67899999999999999999999999999999999999988543 4799
Q ss_pred HHHHhccCcEEc
Q 002579 844 SIWTDKFGFKKI 855 (905)
Q Consensus 844 ~~wt~kfGF~~i 855 (905)
.||++ +||...
T Consensus 309 ~fY~~-~GF~~~ 319 (320)
T TIGR01686 309 SFYEQ-IGFEDE 319 (320)
T ss_pred HHHHH-cCCccC
Confidence 99998 999854
No 60
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=97.83 E-value=5.8e-05 Score=89.18 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=65.2
Q ss_pred eCCeEEEEEEEEEeCCeeE-----------EEeeeEe--------ecCccCCChhHHHHHHHHHHhhhcCccEEEecchh
Q 002579 780 VNSSVVSAGILRVFGQEVA-----------ELPLVAT--------SKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAE 840 (905)
Q Consensus 780 ~~~~vVsaA~lri~g~~vA-----------Elp~VAT--------~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~ 840 (905)
.++.+||-.++|....+.. ||-..++ .++|||||+|+.||+++|+.++..|++.|+|.+..
T Consensus 421 ~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~~ 500 (522)
T TIGR01211 421 KNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISGI 500 (522)
T ss_pred CCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeCc
Confidence 4678999998887764322 5555544 58899999999999999999999999999999999
Q ss_pred hHHHHHHhccCcEEcCH
Q 002579 841 EAESIWTDKFGFKKIDP 857 (905)
Q Consensus 841 ~a~~~wt~kfGF~~i~~ 857 (905)
.|..||.+ +||...++
T Consensus 501 ~A~~FY~k-lGf~~~g~ 516 (522)
T TIGR01211 501 GVREYYRK-LGYELDGP 516 (522)
T ss_pred hHHHHHHH-CCCEEEcc
Confidence 99999998 99998765
No 62
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.80 E-value=6.4e-05 Score=81.07 Aligned_cols=84 Identities=20% Similarity=0.232 Sum_probs=68.7
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcC-ccEEEecch-hhHHHHHHhcc
Q 002579 773 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPAA-EEAESIWTDKF 850 (905)
Q Consensus 773 fy~~VL~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lg-V~~LvLpA~-~~a~~~wt~kf 850 (905)
+.++-+..+|+||+.|...-.+..+|+|-.|.|.|+|||+||+.+|+.++-..+-.-| ..-|+..++ +.|-.+|.+ +
T Consensus 177 ~~~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~r-i 255 (268)
T COG3393 177 SRTYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQR-I 255 (268)
T ss_pred eeEEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHHH-h
Confidence 4444456667999999999999999999999999999999999999999876655555 445665544 457889999 9
Q ss_pred CcEEcCH
Q 002579 851 GFKKIDP 857 (905)
Q Consensus 851 GF~~i~~ 857 (905)
||+.+++
T Consensus 256 GF~~~g~ 262 (268)
T COG3393 256 GFREIGE 262 (268)
T ss_pred CCeecce
Confidence 9998874
No 63
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=97.77 E-value=0.00017 Score=69.79 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=66.2
Q ss_pred EEeeCCeEEEEEEEEEeC--CeeEEEeeeEeecCccCCChhHHHHHHHHHHhh-hcCccEEEe---cchhhHHHHHHhcc
Q 002579 777 ILTVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVL---PAAEEAESIWTDKF 850 (905)
Q Consensus 777 VL~~~~~vVsaA~lri~g--~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~-~lgV~~LvL---pA~~~a~~~wt~kf 850 (905)
++..+|++||.+.+.... ...+++... +.+.+| +|||+.++.++++.+. .+|+.+|++ +.-..+..+|++ +
T Consensus 55 ~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k-~ 131 (156)
T TIGR03585 55 IVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEK-F 131 (156)
T ss_pred EEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHH-c
Confidence 446789999999987665 457788765 889999 9999999999999987 589999986 456678999999 9
Q ss_pred CcEEcCHHH
Q 002579 851 GFKKIDPEL 859 (905)
Q Consensus 851 GF~~i~~~~ 859 (905)
||+.++...
T Consensus 132 Gf~~~g~~~ 140 (156)
T TIGR03585 132 GFEREGVFR 140 (156)
T ss_pred CCeEeeeeh
Confidence 999887543
No 64
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=97.77 E-value=0.00017 Score=75.43 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=63.8
Q ss_pred eecceEEEEEeeCC--eEEEEEEEEEeC-------------------------------------CeeEEEeeeEeecCc
Q 002579 769 EFGGMYCAILTVNS--SVVSAGILRVFG-------------------------------------QEVAELPLVATSKIN 809 (905)
Q Consensus 769 ~f~Gfy~~VL~~~~--~vVsaA~lri~g-------------------------------------~~vAElp~VAT~~~y 809 (905)
|=-+...++|..++ +|++|+-+-..| -.-++|-+|||+|++
T Consensus 23 DaP~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIAvhP~~ 102 (196)
T PF13718_consen 23 DAPNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIAVHPDL 102 (196)
T ss_dssp H-TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEEE-CCC
T ss_pred cCCcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEEEChhh
Confidence 33456778888888 999999887666 236899999999999
Q ss_pred cCCChhHHHHHHHHHHh-------------------------hhcCccEEEe--cchhhHHHHHHhccCcEEcCH
Q 002579 810 HGKGYFQLLFACIEKLL-------------------------SFLRVKSIVL--PAAEEAESIWTDKFGFKKIDP 857 (905)
Q Consensus 810 RgqG~gr~L~~~IE~~L-------------------------~~lgV~~LvL--pA~~~a~~~wt~kfGF~~i~~ 857 (905)
|++|||++|++.+++.+ +.-+|..|=. .+.+++..||.+ .||.++-=
T Consensus 103 q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~k-~gf~pv~l 176 (196)
T PF13718_consen 103 QRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQK-NGFVPVYL 176 (196)
T ss_dssp -SSSHHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHHC-TT-EEEEE
T ss_pred hcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHHH-CCcEEEEE
Confidence 99999999999999999 4667776544 478899999999 99998754
No 65
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.75 E-value=1.4e-05 Score=65.32 Aligned_cols=46 Identities=41% Similarity=1.174 Sum_probs=37.2
Q ss_pred cccccCcCCCcCcccccCCCCceEeccCCCcccccccCCCC----CCCCCCcccccccc
Q 002579 516 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLS----SIPQGDWYCKYCQN 570 (905)
Q Consensus 516 ~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~L~----~vP~g~W~Cp~C~~ 570 (905)
+|.+|++. .+.+++|.||.|.+.||..|+++. ..+.+.|+|+.|..
T Consensus 1 ~C~vC~~~---------~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQS---------DDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSS---------CTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCc---------CCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 47888861 158899999999999999999865 34456999999974
No 66
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.71 E-value=2.1e-05 Score=94.69 Aligned_cols=48 Identities=40% Similarity=0.960 Sum_probs=41.6
Q ss_pred cCCCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCC--CCCCCCCCcccccccc
Q 002579 511 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQN 570 (905)
Q Consensus 511 ~~~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~--L~~vP~g~W~Cp~C~~ 570 (905)
..+...|.+|. ++|++++||.|+.+||..|++ +...|.++|.|+.|..
T Consensus 44 ~~~~e~c~ic~------------~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~ 93 (696)
T KOG0383|consen 44 DAEQEACRICA------------DGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFC 93 (696)
T ss_pred hhhhhhhhhhc------------CCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeecc
Confidence 34567899999 799999999999999999997 6678888899999943
No 67
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.70 E-value=1.4e-05 Score=85.62 Aligned_cols=50 Identities=32% Similarity=0.848 Sum_probs=40.8
Q ss_pred CccccccCcCCCcCcccccCCCCceEeccCCCcccccccCC--CCCCCCCCcccccccccc
Q 002579 514 GIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMF 572 (905)
Q Consensus 514 gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~--L~~vP~g~W~Cp~C~~~~ 572 (905)
.-.|++|+... ..++||+||.|+++||++||. +.+.|+|.|.|..|...+
T Consensus 281 ck~csicgtse---------nddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~~ 332 (336)
T KOG1244|consen 281 CKYCSICGTSE---------NDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEEL 332 (336)
T ss_pred cceeccccCcC---------CCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHHH
Confidence 44677887522 467899999999999999996 667899999999997544
No 68
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.67 E-value=1.7e-05 Score=85.32 Aligned_cols=53 Identities=32% Similarity=0.790 Sum_probs=44.1
Q ss_pred cccCCCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCCCCCCCCCCcccc-cccc
Q 002579 509 YKNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCK-YCQN 570 (905)
Q Consensus 509 ~~~~~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~L~~vP~g~W~Cp-~C~~ 570 (905)
|..-+...|.+|++... ..++++||.|+++||..|++|..+|.|.|.|. .|..
T Consensus 309 W~C~~C~lC~IC~~P~~---------E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 309 WKCSSCELCRICLGPVI---------ESEHLFCDVCDRGPHTLCVGLQDLPRGEWICDMRCRE 362 (381)
T ss_pred hhhcccHhhhccCCccc---------chheeccccccCCCCccccccccccCccchhhhHHHH
Confidence 33455677889997543 57899999999999999999999999999998 5654
No 69
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=97.65 E-value=7.9e-05 Score=75.81 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=76.9
Q ss_pred CCeEEEEEEEEEeC--CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCcEEcCHH
Q 002579 781 NSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDPE 858 (905)
Q Consensus 781 ~~~vVsaA~lri~g--~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF~~i~~~ 858 (905)
+.+|||-++|--.- .+.--+-.|.|...+||||+|+.||+..|..++..|++.+.|....| ..||++ +||+.-+.-
T Consensus 65 ~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ-~~FYe~-lGYe~c~Pi 142 (225)
T KOG3397|consen 65 NDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQ-CRFYES-LGYEKCDPI 142 (225)
T ss_pred ccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccc-hhhhhh-hcccccCce
Confidence 35677766654333 25667889999999999999999999999999999999999988766 579999 999988775
Q ss_pred HHHHHHHhCCc-eeEeCCceeeeeccCCCccccCCCCcce
Q 002579 859 LLSIYRKRCSQ-LVTFKGTSMLQKRVPACRIGSSSTDSTE 897 (905)
Q Consensus 859 ~~~~~~~~~~~-l~~F~gt~mLqK~l~~~~~~~~~~~~~~ 897 (905)
+..-.+.-.++ |.-|+.. .+-|+++...+.+-++.++.
T Consensus 143 ~~~~~~~c~LPa~~~~~~~-~a~~p~~~~k~~~~~a~~~~ 181 (225)
T KOG3397|consen 143 VHSTTATCILPAMNHFQNA-AASNPSFLSKIAQPSASSTV 181 (225)
T ss_pred ecccccceechhhhhhhcc-ccCCCCchhhcCCccccccc
Confidence 43322211111 1112211 22345555556555555443
No 70
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=97.61 E-value=0.00029 Score=71.60 Aligned_cols=83 Identities=8% Similarity=0.125 Sum_probs=65.9
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCC---eeEEEeeeEeecCccCCChhHHHHHHHHHHhhh-cCccEEEecchh---hHHHH
Q 002579 773 MYCAILTVNSSVVSAGILRVFGQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAAE---EAESI 845 (905)
Q Consensus 773 fy~~VL~~~~~vVsaA~lri~g~---~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~-lgV~~LvLpA~~---~a~~~ 845 (905)
.|.+++..++++||.+.+..... ..+||- +.+.++|||||||+.++..+.+.+.. +|+.+|++.... -+..+
T Consensus 77 ~~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l 155 (194)
T PRK10809 77 YFALLDPDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDL 155 (194)
T ss_pred EEEEEECCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHH
Confidence 45554445789999999876542 346665 46799999999999999999999876 899999887755 57888
Q ss_pred HHhccCcEEcCH
Q 002579 846 WTDKFGFKKIDP 857 (905)
Q Consensus 846 wt~kfGF~~i~~ 857 (905)
+++ +||+..+.
T Consensus 156 ~ek-~Gf~~~g~ 166 (194)
T PRK10809 156 LAR-LGFEKEGY 166 (194)
T ss_pred HHH-CCCcEEee
Confidence 988 99997665
No 71
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.54 E-value=3.8e-05 Score=83.95 Aligned_cols=37 Identities=41% Similarity=1.129 Sum_probs=34.5
Q ss_pred CCCceEeccC--CC-cccccccCCCCCCCCCCcccccccc
Q 002579 534 DGGNLLPCDG--CP-RAFHKECASLSSIPQGDWYCKYCQN 570 (905)
Q Consensus 534 dgG~LL~CDg--C~-~afH~~CL~L~~vP~g~W~Cp~C~~ 570 (905)
..|+|+-||. |+ .-||+.|++|..-|.|.|||+.|+.
T Consensus 228 syg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 228 SYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKA 267 (274)
T ss_pred ccccccccCCCCCCcceEEEeccccccCCCCcccchhhhh
Confidence 4899999997 99 6799999999999999999999985
No 72
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=97.48 E-value=0.00091 Score=63.32 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=61.3
Q ss_pred eEEEEEee--CCeEEEEEEEEEe--CCeeEEEeeeEeecCccCCChhHHHHHHHHHHh-hhcCccEEEecchh---hHHH
Q 002579 773 MYCAILTV--NSSVVSAGILRVF--GQEVAELPLVATSKINHGKGYFQLLFACIEKLL-SFLRVKSIVLPAAE---EAES 844 (905)
Q Consensus 773 fy~~VL~~--~~~vVsaA~lri~--g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L-~~lgV~~LvLpA~~---~a~~ 844 (905)
+|.+++.. ++++||...++.. ....+||. +.+.++|||+|||+.++..+.+.+ ..+|+.+|...... .+..
T Consensus 56 ~~~~~i~~~~~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~ 134 (142)
T PF13302_consen 56 YYYFAIEDKDDGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRR 134 (142)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHH
T ss_pred ceEEEEEeccCCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHH
Confidence 44444443 4589999998544 46899999 669999999999999999999998 79999998876544 3566
Q ss_pred HHHhccCcE
Q 002579 845 IWTDKFGFK 853 (905)
Q Consensus 845 ~wt~kfGF~ 853 (905)
++.+ +||+
T Consensus 135 ~~~k-~GF~ 142 (142)
T PF13302_consen 135 LLEK-LGFE 142 (142)
T ss_dssp HHHH-TT-E
T ss_pred HHHH-cCCC
Confidence 6666 9995
No 74
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=97.46 E-value=0.00084 Score=67.23 Aligned_cols=78 Identities=8% Similarity=0.060 Sum_probs=62.9
Q ss_pred eeCCeEEEEEEEEEeCC--eeEEEeeeEeecCccCCChhHHHHHHHHHHhh-hcCccEEEecchh---hHHHHHHhccCc
Q 002579 779 TVNSSVVSAGILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLS-FLRVKSIVLPAAE---EAESIWTDKFGF 852 (905)
Q Consensus 779 ~~~~~vVsaA~lri~g~--~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~-~lgV~~LvLpA~~---~a~~~wt~kfGF 852 (905)
..+|++||.+.++.... ..+|+-. .+.++|||||||+.++.++.+.+. .+|+++|.+.... .+..+|++ +||
T Consensus 73 ~~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek-~Gf 150 (179)
T PRK10151 73 FKEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALR-NGF 150 (179)
T ss_pred EECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHH-CCC
Confidence 46899999999876543 5688875 689999999999999999988775 5789998776433 47788887 999
Q ss_pred EEcCHH
Q 002579 853 KKIDPE 858 (905)
Q Consensus 853 ~~i~~~ 858 (905)
+..+..
T Consensus 151 ~~~g~~ 156 (179)
T PRK10151 151 TLEGCL 156 (179)
T ss_pred EEEeEe
Confidence 987764
No 75
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.40 E-value=7.2e-05 Score=79.80 Aligned_cols=49 Identities=39% Similarity=1.026 Sum_probs=40.0
Q ss_pred cccCCceeeccCCCCCCCCCCCCceeecC--CCC-CcCCcCCCCcCcCCcccCCCCCCceecCCccc
Q 002579 611 EAELSGCLLCRGCDFSKSGFGPRTILLCD--QCE-REFHVGCLKKHKMADLRELPKGKWFCCMDCSR 674 (905)
Q Consensus 611 e~e~~~C~vC~~~df~~sg~~~~~LI~CD--qC~-rayHv~CL~p~~~~~L~evP~g~WfCp~~C~~ 674 (905)
+++..+|+ |.+.. -+.|+-|| .|. -|||+.|+ .|++.|+|.||| +.|+.
T Consensus 218 e~e~lYCf-CqqvS-------yGqMVaCDn~nCkrEWFH~~CV------GLk~pPKG~WYC-~eCk~ 269 (271)
T COG5034 218 EGEELYCF-CQQVS-------YGQMVACDNANCKREWFHLECV------GLKEPPKGKWYC-PECKK 269 (271)
T ss_pred cCceeEEE-ecccc-------cccceecCCCCCchhheecccc------ccCCCCCCcEeC-HHhHh
Confidence 34556787 98764 46899999 598 57999999 689999999999 88964
No 76
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.32 E-value=0.00011 Score=78.59 Aligned_cols=49 Identities=39% Similarity=1.068 Sum_probs=40.3
Q ss_pred cCCCccccccCcCCCcCcccccCCCCceEeccC--CCcc-cccccCCCCCCCCCCcccccccc
Q 002579 511 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDG--CPRA-FHKECASLSSIPQGDWYCKYCQN 570 (905)
Q Consensus 511 ~~~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDg--C~~a-fH~~CL~L~~vP~g~W~Cp~C~~ 570 (905)
.++.-+|. |++. ..|+|+-||+ |.+- ||+.|++|...|.|.|||+.|+.
T Consensus 218 e~e~lYCf-Cqqv----------SyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 218 EGEELYCF-CQQV----------SYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECKK 269 (271)
T ss_pred cCceeEEE-eccc----------ccccceecCCCCCchhheeccccccCCCCCCcEeCHHhHh
Confidence 45566775 4432 4799999995 9985 99999999999999999999974
No 77
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.32 E-value=8.7e-05 Score=81.16 Aligned_cols=37 Identities=38% Similarity=0.998 Sum_probs=32.0
Q ss_pred CCCceeecCC--CC-CcCCcCCCCcCcCCcccCCCCCCceecCCccc
Q 002579 631 GPRTILLCDQ--CE-REFHVGCLKKHKMADLRELPKGKWFCCMDCSR 674 (905)
Q Consensus 631 ~~~~LI~CDq--C~-rayHv~CL~p~~~~~L~evP~g~WfCp~~C~~ 674 (905)
.-+.||.||. |+ .|||..|+ .|...|.|+||| +.|..
T Consensus 228 syg~Mi~CDn~~C~~eWFH~~CV------GL~~~PkgkWyC-~~C~~ 267 (274)
T KOG1973|consen 228 SYGKMIGCDNPGCPIEWFHFTCV------GLKTKPKGKWYC-PRCKA 267 (274)
T ss_pred ccccccccCCCCCCcceEEEecc------ccccCCCCcccc-hhhhh
Confidence 3578999997 99 99999999 578899999999 57853
No 78
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=97.28 E-value=0.001 Score=68.35 Aligned_cols=136 Identities=14% Similarity=0.121 Sum_probs=91.8
Q ss_pred HHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEeeCCeEEEEEEEEEe--C---CeeEEEeeeE
Q 002579 730 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVF--G---QEVAELPLVA 804 (905)
Q Consensus 730 ~kLs~Al~If~EcFdPiid~rSgrDLIp~MVy~~~~~~~~f~Gfy~~VL~~~~~vVsaA~lri~--g---~~vAElp~VA 804 (905)
.-....-++.++.|.|- ...+++..+-- ..+.++.= .+|...+|++|+...+--. | ....=|--+|
T Consensus 12 ~d~~~i~~~~~~aF~~~----~e~~~v~~lR~---~~~~~~~L--slVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaPLa 82 (171)
T COG3153 12 ADIPAIEALTREAFGPG----REAKLVDKLRE---GGRPDLTL--SLVAEDDGEVVGHILFSPVTVGGEELGWLGLAPLA 82 (171)
T ss_pred hhHHHHHHHHHHHhhcc----hHHHHHHHHHh---cCCcccce--eEEEeeCCEEEEEEEEeEEEecCcccceEEEEeEE
Confidence 33456667778888633 22334332222 22222222 2344777999998766422 2 1455677899
Q ss_pred eecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCcEEcCHHHHHHHHHhCCceeEeCCceeeeeccC
Q 002579 805 TSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDPELLSIYRKRCSQLVTFKGTSMLQKRVP 884 (905)
Q Consensus 805 T~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF~~i~~~~~~~~~~~~~~l~~F~gt~mLqK~l~ 884 (905)
|+++|||||+|++||...++.|+.+|...+++--.+ .+|.+ |||+......+. + +.. +|.+.+|-+.|.
T Consensus 83 V~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGdp---~YY~r-fGF~~~~~~~l~---~---p~~-~~~~~fl~~~L~ 151 (171)
T COG3153 83 VDPEYQGQGIGSALVREGLEALRLAGASAVVVLGDP---TYYSR-FGFEPAAGAKLY---A---PGP-VPDERFLALELG 151 (171)
T ss_pred EchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecCc---ccccc-cCcEEccccccc---c---CCC-CCCceEEEEEcc
Confidence 999999999999999999999999999998866543 36744 999998876642 1 223 678888888876
Q ss_pred C
Q 002579 885 A 885 (905)
Q Consensus 885 ~ 885 (905)
.
T Consensus 152 ~ 152 (171)
T COG3153 152 D 152 (171)
T ss_pred C
Confidence 5
No 79
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.19 E-value=9.1e-05 Score=91.02 Aligned_cols=129 Identities=25% Similarity=0.406 Sum_probs=83.0
Q ss_pred CCCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCC--CCCCCCCCccccccccccccccccccccccccccc
Q 002579 512 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGR 589 (905)
Q Consensus 512 ~~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~--L~~vP~g~W~Cp~C~~~~~kek~v~~n~nava~Gr 589 (905)
.-+++|..|. |.|.++||..||+.||..|.. .-.+|...|.|-.|.. ++. +. -
T Consensus 342 ~~ddhcrf~~------------d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~--hkv-------ng----v 396 (1414)
T KOG1473|consen 342 EYDDHCRFCH------------DLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNI--HKV-------NG----V 396 (1414)
T ss_pred eecccccccC------------cccceeecccCCceEEeeecCCccccCCCccchhhhhhh--hcc-------Cc----c
Confidence 3467899999 799999999999999999996 5578999999999973 211 11 0
Q ss_pred cccccchh-hhhhhhhhhcc--------cccccCCceeeccCCCCCCCCCCCCceeecCC-CCCcCCc-CCCCcCcCCcc
Q 002579 590 VSGVDSVE-QITKRCIRIVK--------NLEAELSGCLLCRGCDFSKSGFGPRTILLCDQ-CEREFHV-GCLKKHKMADL 658 (905)
Q Consensus 590 ~~Gvd~ie-qI~~R~iR~~k--------d~e~e~~~C~vC~~~df~~sg~~~~~LI~CDq-C~rayHv-~CL~p~~~~~L 658 (905)
+.++-+.+ ++. .+|+.. +.......|.+|+. +++++-|+. |++.||+ .||+..-. -
T Consensus 397 vd~vl~~~K~~~--~iR~~~iG~dr~gr~ywfi~rrl~Ie~~---------det~l~yysT~pqly~ll~cLd~~~~--e 463 (1414)
T KOG1473|consen 397 VDCVLPPSKNVD--SIRHTPIGRDRYGRKYWFISRRLRIEGM---------DETLLWYYSTCPQLYHLLRCLDRTYV--E 463 (1414)
T ss_pred cccccChhhccc--ceeccCCCcCccccchhceeeeeEEecC---------CCcEEEEecCcHHHHHHHHHhchHHH--H
Confidence 11110000 000 011110 00111234999985 468899997 9999999 99974211 1
Q ss_pred cCCCCCCceecCCccchhHHH
Q 002579 659 RELPKGKWFCCMDCSRINSVL 679 (905)
Q Consensus 659 ~evP~g~WfCp~~C~~I~~~L 679 (905)
..++.+-|+| .+|-.-+..|
T Consensus 464 ~~L~d~i~~~-~ee~~rqM~l 483 (1414)
T KOG1473|consen 464 MYLCDGIWER-REEIIRQMGL 483 (1414)
T ss_pred Hhhccchhhh-HHHHHHhccc
Confidence 3578899999 7775444433
No 80
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.15 E-value=0.00017 Score=82.62 Aligned_cols=124 Identities=28% Similarity=0.578 Sum_probs=74.1
Q ss_pred cccccCcCCCcCcccccCCCCceEeccCCCcccccccCCCC---CCCC-------CCccccccccccc-ccccccccccc
Q 002579 516 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLS---SIPQ-------GDWYCKYCQNMFE-RKRFLQHDANA 584 (905)
Q Consensus 516 ~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~L~---~vP~-------g~W~Cp~C~~~~~-kek~v~~n~na 584 (905)
+|.+|...-+. |-|+++-||.|+...|-.|++.. .+|. ..|||--|+..+. +.--+-+|.
T Consensus 121 iCcVClg~rs~-------da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~-- 191 (707)
T KOG0957|consen 121 ICCVCLGQRSV-------DAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNR-- 191 (707)
T ss_pred EEEEeecCccc-------cccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCc--
Confidence 78888875544 78999999999999999999842 3333 4599999976432 110111111
Q ss_pred cccccccccc---ch-------------hhhhhhhhhhcccccc---cCCceeeccCCCCCCCCCCCCceeecC--CCCC
Q 002579 585 VEAGRVSGVD---SV-------------EQITKRCIRIVKNLEA---ELSGCLLCRGCDFSKSGFGPRTILLCD--QCER 643 (905)
Q Consensus 585 va~Gr~~Gvd---~i-------------eqI~~R~iR~~kd~e~---e~~~C~vC~~~df~~sg~~~~~LI~CD--qC~r 643 (905)
.|.+...| |+ .++...+.-.+.+.++ -...|..|...-|.+. +..|.|| .|..
T Consensus 192 --~GifKetDigrWvH~iCALYvpGVafg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~fARt----Gvci~CdaGMCk~ 265 (707)
T KOG0957|consen 192 --FGIFKETDIGRWVHAICALYVPGVAFGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIFART----GVCIRCDAGMCKE 265 (707)
T ss_pred --CCcccccchhhHHHHHHHhhcCccccccccccccccHHHhhhhhhccchhccccchhhhhc----ceeeeccchhhhh
Confidence 11111111 11 1111111111111111 1234999998777654 4789999 7999
Q ss_pred cCCcCCCCcCc
Q 002579 644 EFHVGCLKKHK 654 (905)
Q Consensus 644 ayHv~CL~p~~ 654 (905)
+||+.|.+..|
T Consensus 266 YfHVTCAQk~G 276 (707)
T KOG0957|consen 266 YFHVTCAQKLG 276 (707)
T ss_pred hhhhhHHhhhc
Confidence 99999998765
No 81
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.15 E-value=0.00016 Score=85.28 Aligned_cols=140 Identities=24% Similarity=0.479 Sum_probs=83.8
Q ss_pred eccccccCCCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCC--CCCCCCCCcccccccccccccccccccc
Q 002579 505 LLEGYKNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMFERKRFLQHDA 582 (905)
Q Consensus 505 ll~G~~~~~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~--L~~vP~g~W~Cp~C~~~~~kek~v~~n~ 582 (905)
+..||......+|..|+.- .|...+++|+.|+-+||-+|.. ...+|.|.|+|+.|..+.+.+..++.+.
T Consensus 59 l~~gWrC~~crvCe~c~~~---------gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg~s 129 (694)
T KOG4443|consen 59 LSGGWRCPSCRVCEACGTT---------GDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPGLS 129 (694)
T ss_pred hcCCcccCCceeeeecccc---------CCcccccccccccccccccccCCccccccCcccccHHHHhhhhccccccccc
Confidence 4456666677777777731 2678999999999999999996 6789999999999976544332221100
Q ss_pred ccccccccccccchhhhhhhhhhhcccccccCCceeeccCCCCCCCCCCCCceeecCCCCCcCCcCCCCcCcCCcccCCC
Q 002579 583 NAVEAGRVSGVDSVEQITKRCIRIVKNLEAELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELP 662 (905)
Q Consensus 583 nava~Gr~~Gvd~ieqI~~R~iR~~kd~e~e~~~C~vC~~~df~~sg~~~~~LI~CDqC~rayHv~CL~p~~~~~L~evP 662 (905)
.++.+.. ..| ........|.+|...- .. ...-.++.|++|.+|-|-.|-.-..+.-+...-
T Consensus 130 ----------~~~~~~~-~~~-----~~c~s~~~cPvc~~~Y--~~-~e~~~~~~c~~c~rwsh~~c~~~sdd~~~q~~v 190 (694)
T KOG4443|consen 130 ----------LDLQEGY-LQC-----APCASLSYCPVCLIVY--QD-SESLPMVCCSICQRWSHGGCDGISDDKYMQAQV 190 (694)
T ss_pred ----------hhhhccC-ccc-----ccccccccCchHHHhh--hh-ccchhhHHHHHhcccccCCCCccchHHHHHHhh
Confidence 1110000 000 0111234577776531 11 123345899999999999998654321111111
Q ss_pred CCCceecCCcc
Q 002579 663 KGKWFCCMDCS 673 (905)
Q Consensus 663 ~g~WfCp~~C~ 673 (905)
.-.+.| ..|.
T Consensus 191 D~~~~C-S~CR 200 (694)
T KOG4443|consen 191 DLQYKC-STCR 200 (694)
T ss_pred hhhccc-ceee
Confidence 135777 7785
No 82
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.11 E-value=0.0021 Score=65.90 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=83.1
Q ss_pred CceecceEEEEEeeC-CeEEEEEEEEEeCC-----eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEec--c
Q 002579 767 GQEFGGMYCAILTVN-SSVVSAGILRVFGQ-----EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP--A 838 (905)
Q Consensus 767 ~~~f~Gfy~~VL~~~-~~vVsaA~lri~g~-----~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLp--A 838 (905)
...=.||+.+|++.+ |++++=|.+-.|.. .++|. .|=+++++||+|+|++|++++.+.+..+|++.++-. +
T Consensus 46 ~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~-SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~ 124 (169)
T COG1247 46 GRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVEL-SIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIES 124 (169)
T ss_pred hcccCCceEEEEEcCCCeEEEEEEeeeccCccccceEEEE-EEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcC
Confidence 333356899998866 99999998877763 45554 356899999999999999999999999999887632 3
Q ss_pred hhhHHHHHHhccCcEEcCHHHHHHHHHhCCceeEeCCceeeeeccCC
Q 002579 839 AEEAESIWTDKFGFKKIDPELLSIYRKRCSQLVTFKGTSMLQKRVPA 885 (905)
Q Consensus 839 ~~~a~~~wt~kfGF~~i~~~~~~~~~~~~~~l~~F~gt~mLqK~l~~ 885 (905)
...|.--.-.+|||...+.....-. ..-.+-.+.+||+.|..
T Consensus 125 ~n~aSi~lh~~~GF~~~G~~~~vg~-----k~g~wld~~~~~~~l~~ 166 (169)
T COG1247 125 DNLASIALHEKLGFEEVGTFPEVGD-----KFGRWLDLVLMQLLLEE 166 (169)
T ss_pred CCcHhHHHHHHCCCEEecccccccc-----ccceEEeeeeeehhhcc
Confidence 3345445556699999988543322 23456678888888754
No 83
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.08 E-value=0.00019 Score=85.56 Aligned_cols=48 Identities=33% Similarity=0.877 Sum_probs=39.6
Q ss_pred CccccccCcCCCcCcccccCCCCceEeccCCCcc-cccccCC--CCCCCCCCcccccccc
Q 002579 514 GIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRA-FHKECAS--LSSIPQGDWYCKYCQN 570 (905)
Q Consensus 514 gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~a-fH~~CL~--L~~vP~g~W~Cp~C~~ 570 (905)
...|.+|... ...+.||+||+|..+ ||.+||+ |.++|-+.|||++|.-
T Consensus 215 ~~~C~IC~~~---------DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 215 EVKCDICTVH---------DPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred cccceeeccC---------ChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 3568889842 236688999999999 9999997 5679999999999953
No 84
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=96.79 E-value=0.015 Score=58.62 Aligned_cols=123 Identities=16% Similarity=0.133 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEee-CCeEEEEEEEEEeC-----CeeEEE
Q 002579 727 ETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV-NSSVVSAGILRVFG-----QEVAEL 800 (905)
Q Consensus 727 e~~~kLs~Al~If~EcFdPiid~rSgrDLIp~MVy~~~~~~~~f~Gfy~~VL~~-~~~vVsaA~lri~g-----~~vAEl 800 (905)
+.-.+|-.-++.|.++=+|.+. |..+|..+- | ..-.|.-.+.+.++. ++++||-|.+..+= .+.--|
T Consensus 15 ~~i~rLikela~Fek~~~~v~~--te~~l~~~~-F----~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~~iYl 87 (163)
T KOG3216|consen 15 EDILRLIKELAEFEKLEDQVEA--TEENLARDG-F----IDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQGIYL 87 (163)
T ss_pred HHHHHHHHHHHHHHHhccchhh--chhhhhhhh-c----cCCCccEEEEEEEecCCCceeEEeeeecccccccccceEEE
Confidence 3445566778888888777654 444444432 2 222334445555554 88999999876543 356677
Q ss_pred eeeEeecCccCCChhHHHHHHHHHHhhhcCccE---EEecchhhHHHHHHhccCcEEcCH
Q 002579 801 PLVATSKINHGKGYFQLLFACIEKLLSFLRVKS---IVLPAAEEAESIWTDKFGFKKIDP 857 (905)
Q Consensus 801 p~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~---LvLpA~~~a~~~wt~kfGF~~i~~ 857 (905)
-=+=|+++|||+|+|+.|++.+-+.+..+|..+ +|+.--.-|+.+|++ .|++...+
T Consensus 88 eDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k-~gaq~l~~ 146 (163)
T KOG3216|consen 88 EDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEK-VGAQDLKE 146 (163)
T ss_pred EeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHH-hCccccce
Confidence 778899999999999999999999999999887 567777889999999 99988766
No 85
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.71 E-value=0.00041 Score=53.80 Aligned_cols=34 Identities=44% Similarity=1.111 Sum_probs=21.0
Q ss_pred CceEeccCCCcccccccCCCCCCCCC-Cccccccc
Q 002579 536 GNLLPCDGCPRAFHKECASLSSIPQG-DWYCKYCQ 569 (905)
Q Consensus 536 G~LL~CDgC~~afH~~CL~L~~vP~g-~W~Cp~C~ 569 (905)
+.|+.|++|.-.+|+.|+++..+|.+ +|+|..|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 46999999999999999999999887 79999884
No 86
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.71 E-value=0.00066 Score=77.91 Aligned_cols=58 Identities=29% Similarity=0.803 Sum_probs=44.5
Q ss_pred CceeeccCCCCCCCCCCCCceeecCCCCCcCCcCCCCcCcCCcccCCCCC----CceecCCc--cchhHHHHHhh
Q 002579 615 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKG----KWFCCMDC--SRINSVLQNLL 683 (905)
Q Consensus 615 ~~C~vC~~~df~~sg~~~~~LI~CDqC~rayHv~CL~p~~~~~L~evP~g----~WfCp~~C--~~I~~~Lq~Lv 683 (905)
-.|.+|+++. +--.+++||.|...||++||.| ||+.+|+. .|.| ..| ..-....+.++
T Consensus 545 ysCgiCkks~------dQHll~~CDtC~lhYHlGCL~P----PLTR~Pkk~kn~gWqC-sECdk~esSD~e~ei~ 608 (707)
T KOG0957|consen 545 YSCGICKKST------DQHLLTQCDTCHLHYHLGCLSP----PLTRLPKKNKNFGWQC-SECDKNESSDSEQEII 608 (707)
T ss_pred eeeeeeccch------hhHHHhhcchhhceeeccccCC----ccccCcccccCcceee-cccccccCcchhhhhc
Confidence 3599999863 4556799999999999999998 78888864 5999 899 34444455443
No 87
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=96.43 E-value=0.018 Score=63.04 Aligned_cols=77 Identities=16% Similarity=-0.000 Sum_probs=55.0
Q ss_pred eeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCcEEcCH
Q 002579 779 TVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 857 (905)
Q Consensus 779 ~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF~~i~~ 857 (905)
..+++|||.|+-.....+.+||- |+|+++|||||+++++-.++......-|+--.|= |...+---.-.|+||+...+
T Consensus 171 ~~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WD-c~N~~S~~lA~kLGf~~~~~ 247 (265)
T PF12746_consen 171 LHDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPSWD-CHNLASIALAEKLGFHFDFE 247 (265)
T ss_dssp EETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-E-ESSHHHHHHHHHCT--EEEE
T ss_pred EECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCee-CCCHHHHHHHHHcCCcccce
Confidence 56899999887666667778986 7999999999999999999999988888877773 33333223335699987654
No 88
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=96.34 E-value=0.035 Score=54.62 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=57.7
Q ss_pred ceEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchh-------hHHH
Q 002579 772 GMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAE-------EAES 844 (905)
Q Consensus 772 Gfy~~VL~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~-------~a~~ 844 (905)
-+|++ .-|+.++|++.+.+.|. -|+|--+.|++.-||.|.|..|++.+.+.+. +|...++.+.. .+..
T Consensus 39 ~l~aA--rFNdRlLgAv~v~~~~~-~~~L~~l~VRevTRrRGVG~yLlee~~rq~p--~i~~w~l~~~~~~~~~~~~~~~ 113 (128)
T PF12568_consen 39 RLFAA--RFNDRLLGAVKVTISGQ-QAELSDLCVREVTRRRGVGLYLLEEVLRQLP--DIKHWWLADEGVEPQDRAVMAA 113 (128)
T ss_dssp EEEEE--EETTEEEEEEEEEEETT-EEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S--THHHHHH
T ss_pred eEEEE--EechheeeeEEEEEcCc-ceEEeeEEEeeccccccHHHHHHHHHHHHCC--CCcEEEEecCCCcccchHHHHH
Confidence 36666 88999999999999875 7999999999999999999999999999994 45555555432 2345
Q ss_pred HHHhccCcEEcCH
Q 002579 845 IWTDKFGFKKIDP 857 (905)
Q Consensus 845 ~wt~kfGF~~i~~ 857 (905)
|-.. +||...++
T Consensus 114 Fm~a-~GF~~~~~ 125 (128)
T PF12568_consen 114 FMQA-CGFSAQSD 125 (128)
T ss_dssp HHHH-HT-EE-SS
T ss_pred HHHH-cCccccCC
Confidence 5555 99987653
No 89
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=96.32 E-value=0.0019 Score=64.76 Aligned_cols=27 Identities=41% Similarity=1.032 Sum_probs=23.7
Q ss_pred cCCcCCCCcCcCCcccCCCCCCceecCCccch
Q 002579 644 EFHVGCLKKHKMADLRELPKGKWFCCMDCSRI 675 (905)
Q Consensus 644 ayHv~CL~p~~~~~L~evP~g~WfCp~~C~~I 675 (905)
.||+.||+| ||+++|+|+|+| +.|..-
T Consensus 1 g~H~~CL~P----pl~~~P~g~W~C-p~C~~~ 27 (148)
T cd04718 1 GFHLCCLRP----PLKEVPEGDWIC-PFCEVE 27 (148)
T ss_pred CcccccCCC----CCCCCCCCCcCC-CCCcCC
Confidence 599999998 899999999999 788643
No 90
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=96.32 E-value=0.0025 Score=80.15 Aligned_cols=57 Identities=25% Similarity=0.661 Sum_probs=44.4
Q ss_pred ccCCceeeccCCCCCCCCCCCCceeecCCCCCcCCcCCCCcCcCCcccCCCCCCceecCCccchhHHH
Q 002579 612 AELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSVL 679 (905)
Q Consensus 612 ~e~~~C~vC~~~df~~sg~~~~~LI~CDqC~rayHv~CL~p~~~~~L~evP~g~WfCp~~C~~I~~~L 679 (905)
.+...|.||.+++. .+-+.+++||.|+.++|.+|.. .+-+|+|.|+| ..|..-....
T Consensus 217 ~~D~~C~iC~~~~~----~n~n~ivfCD~Cnl~VHq~Cyg------i~~ipeg~WlC-r~Cl~s~~~~ 273 (1051)
T KOG0955|consen 217 EEDAVCCICLDGEC----QNSNVIVFCDGCNLAVHQECYG------IPFIPEGQWLC-RRCLQSPQRP 273 (1051)
T ss_pred CCCccceeeccccc----CCCceEEEcCCCcchhhhhccC------CCCCCCCcEee-hhhccCcCcc
Confidence 34567999998863 3457899999999999999995 34578999999 8885444333
No 91
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=96.27 E-value=0.0072 Score=55.95 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=56.7
Q ss_pred EEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEE-E-ecchhhHHHHHHhccCcEE
Q 002579 777 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSI-V-LPAAEEAESIWTDKFGFKK 854 (905)
Q Consensus 777 VL~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~L-v-LpA~~~a~~~wt~kfGF~~ 854 (905)
||--+|.+||=.. -+..+||+.-.|.|+|||||+.+.++....+.|..+|+.-- . ..+-+....+-.+ +||..
T Consensus 3 llgpeG~PVSW~l----mdqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~-lg~~~ 77 (89)
T PF08444_consen 3 LLGPEGNPVSWSL----MDQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSKS-LGFIF 77 (89)
T ss_pred ccCCCCCEeEEEE----ecccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHHH-CCCee
Confidence 3455688888554 46789999999999999999999999999999999999842 2 2222333444444 88887
Q ss_pred cC
Q 002579 855 ID 856 (905)
Q Consensus 855 i~ 856 (905)
++
T Consensus 78 ~p 79 (89)
T PF08444_consen 78 MP 79 (89)
T ss_pred cC
Confidence 75
No 92
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=96.16 E-value=0.025 Score=50.78 Aligned_cols=56 Identities=13% Similarity=0.023 Sum_probs=48.6
Q ss_pred EEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccE
Q 002579 777 ILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKS 833 (905)
Q Consensus 777 VL~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~ 833 (905)
.+..+|+.+|...++. +.++..|--.-|.+++||||+++.||+++-+.++.-|.+-
T Consensus 3 ~~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv 58 (78)
T PF14542_consen 3 ELKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKV 58 (78)
T ss_dssp EEESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EE
T ss_pred EEEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEE
Confidence 4567789999999987 6689999999999999999999999999999999999663
No 93
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=96.11 E-value=0.0074 Score=50.58 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=39.8
Q ss_pred eEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCc
Q 002579 803 VATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 852 (905)
Q Consensus 803 VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF 852 (905)
++|+++|||+|+|+.|+..+++.+...|+. ....+..+|.. +||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~~-~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYEK-NGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHHh-cCC
Confidence 999999999999999999999999998887 56677888888 888
No 94
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.07 E-value=0.0065 Score=74.37 Aligned_cols=58 Identities=16% Similarity=0.096 Sum_probs=49.2
Q ss_pred EEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEE--ecchhhHHHHHHhccCcEEcCH
Q 002579 798 AELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV--LPAAEEAESIWTDKFGFKKIDP 857 (905)
Q Consensus 798 AElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~Lv--LpA~~~a~~~wt~kfGF~~i~~ 857 (905)
+.|-+|||+|++|++|||++|++.++++++ .|+..|- -.+.+++..||.+ -||.++-=
T Consensus 532 ~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~r-nGF~pVhl 591 (758)
T COG1444 532 WRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWLR-NGFVPVHL 591 (758)
T ss_pred eeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHHH-cCeEEEEe
Confidence 678899999999999999999999999986 4444444 3478999999999 99998754
No 95
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=96.03 E-value=0.036 Score=54.19 Aligned_cols=88 Identities=17% Similarity=0.206 Sum_probs=66.6
Q ss_pred cceEEEEEeeCC--eEEEEEEEEEeC----CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhh-cCccEEEecchhh--
Q 002579 771 GGMYCAILTVNS--SVVSAGILRVFG----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAAEE-- 841 (905)
Q Consensus 771 ~Gfy~~VL~~~~--~vVsaA~lri~g----~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~-lgV~~LvLpA~~~-- 841 (905)
.+.|.++...++ ++||...+.... .+.+|+-..- .+.|+|||++...+.++.+.+-. +|+.+|++-....
T Consensus 64 ~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~ 142 (187)
T COG1670 64 GGAFAIELKATGDGELIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENE 142 (187)
T ss_pred CceEEEEEEeCCCCeEEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCH
Confidence 345666666544 999999998655 5677877666 99999999999999998888655 9999988776554
Q ss_pred -HHHHHHhccCcEEcCHHHH
Q 002579 842 -AESIWTDKFGFKKIDPELL 860 (905)
Q Consensus 842 -a~~~wt~kfGF~~i~~~~~ 860 (905)
+..++++ +||+..+....
T Consensus 143 ~S~rv~ek-~Gf~~eg~~~~ 161 (187)
T COG1670 143 ASIRVYEK-LGFRLEGELRQ 161 (187)
T ss_pred HHHHHHHH-cCChhhhhhhh
Confidence 4455556 99998776443
No 96
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=95.99 E-value=0.0054 Score=61.82 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=51.7
Q ss_pred eeEEEeeeEeecCccCCChhHHHHHH-HHHHhhhcCccEEEecchhhHHHHHHhccCcEEcCH
Q 002579 796 EVAELPLVATSKINHGKGYFQLLFAC-IEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 857 (905)
Q Consensus 796 ~vAElp~VAT~~~yRgqG~gr~L~~~-IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF~~i~~ 857 (905)
.-+.|-.+|+.++||.||++..|+.. |..+-..-=+++.+|=+-+.+++||++ |||+.+++
T Consensus 100 ~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYEr-~gFk~vgp 161 (190)
T KOG4144|consen 100 HNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYER-FGFKAVGP 161 (190)
T ss_pred cceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhHh-cCceeecc
Confidence 34778889999999999999999877 444444455678999999999999999 99999998
No 97
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=95.83 E-value=0.0023 Score=83.10 Aligned_cols=60 Identities=32% Similarity=0.754 Sum_probs=49.0
Q ss_pred ccCCceeeccCCCCCCCCCCCCceeecCCCCCcCCcCCCCcCcCCcccCCCCCCceecCCccchhHHHHHh
Q 002579 612 AELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSVLQNL 682 (905)
Q Consensus 612 ~e~~~C~vC~~~df~~sg~~~~~LI~CDqC~rayHv~CL~p~~~~~L~evP~g~WfCp~~C~~I~~~Lq~L 682 (905)
.....|.+|+..+ ....|+.||.|..+||..|++| .+..+|.++|+| +.|..-+......
T Consensus 1106 ~~~~~c~~cr~k~------~~~~m~lc~~c~~~~h~~C~rp----~~~~~~~~dW~C-~~c~~e~~~rr~~ 1165 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKK------QDEKMLLCDECLSGFHLFCLRP----ALSSVPPGDWMC-PSCRKEHRARRQK 1165 (1404)
T ss_pred cchhhhhhhhhcc------cchhhhhhHhhhhhHHHHhhhh----hhccCCcCCccC-Cccchhhhhhhhh
Confidence 3446799998753 5678999999999999999998 688999999999 8998777644333
No 98
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=95.82 E-value=0.021 Score=53.92 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=57.8
Q ss_pred cceEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchh
Q 002579 771 GGMYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAE 840 (905)
Q Consensus 771 ~Gfy~~VL~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~ 840 (905)
.++|++ ..+|+.++.++..-.|.+..-|.---|..++||||+++.|+....+.++.-|.+ ++|.-.
T Consensus 15 ~~~y~~--~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~k--iiP~Cs 80 (99)
T COG2388 15 NGRYVL--TDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLK--IIPLCS 80 (99)
T ss_pred ceEEEE--ecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCe--Ecccch
Confidence 567775 889999999999888999999999999999999999999999999999999975 334444
No 99
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=95.82 E-value=0.0046 Score=73.54 Aligned_cols=51 Identities=29% Similarity=0.955 Sum_probs=41.8
Q ss_pred cCCceeeccCCCCCCCCCCCCceeecC--CCCCcCCcCCCCcCcCCcccCCCCCCceecCCccc
Q 002579 613 ELSGCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 674 (905)
Q Consensus 613 e~~~C~vC~~~df~~sg~~~~~LI~CD--qC~rayHv~CL~p~~~~~L~evP~g~WfCp~~C~~ 674 (905)
.+++|.||.+-. |-.++.++.|| .|..+.|..|. .+.++|.|.||| ..|..
T Consensus 4 MVGGCCVCSDEr----GWaeNPLVYCDG~nCsVAVHQaCY------GIvqVPtGpWfC-rKCes 56 (900)
T KOG0956|consen 4 MVGGCCVCSDER----GWAENPLVYCDGHNCSVAVHQACY------GIVQVPTGPWFC-RKCES 56 (900)
T ss_pred cccceeeecCcC----CCccCceeeecCCCceeeeehhcc------eeEecCCCchhh-hhhhh
Confidence 357899997642 34578899999 69999999999 466899999999 88853
No 100
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=95.72 E-value=0.049 Score=60.04 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=69.6
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCc
Q 002579 773 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF 852 (905)
Q Consensus 773 fy~~VL~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF 852 (905)
.++++...++++|+|+++ .|.- |.-|||++.+||-|+.-.|+..+-.++-++|.-.|||-.-++-..+... +||
T Consensus 37 ~~v~~~~~~~~iiacGsi--aGnv---ikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk~-~GF 110 (352)
T COG3053 37 YFVAIYRDNEEIIACGSI--AGNV---IKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFKQ-CGF 110 (352)
T ss_pred EEEEEEcCCCcEEEeccc--ccce---eEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHHh-CCc
Confidence 455554566999999994 5643 8899999999999999999999999999999999999999998889988 999
Q ss_pred EEcCH
Q 002579 853 KKIDP 857 (905)
Q Consensus 853 ~~i~~ 857 (905)
..+..
T Consensus 111 ~~i~~ 115 (352)
T COG3053 111 SEIAS 115 (352)
T ss_pred eEeec
Confidence 99877
No 101
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=95.69 E-value=0.035 Score=57.86 Aligned_cols=84 Identities=20% Similarity=0.241 Sum_probs=63.7
Q ss_pred eEEEEEeeCCeEEEEEEEEEeC---CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEe---cchhhHHHHH
Q 002579 773 MYCAILTVNSSVVSAGILRVFG---QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVL---PAAEEAESIW 846 (905)
Q Consensus 773 fy~~VL~~~~~vVsaA~lri~g---~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvL---pA~~~a~~~w 846 (905)
-|.+.....+++||-+++|.-- ..++=.-=|-+.+.|||+|+|+.|++.+|.++...+.+.++| ..-.-|.+||
T Consensus 93 ~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy 172 (202)
T KOG2488|consen 93 RYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFY 172 (202)
T ss_pred eEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHH
Confidence 3444444445899999988643 334444445567789999999999999999999998886654 4566799999
Q ss_pred HhccCcEEcCH
Q 002579 847 TDKFGFKKIDP 857 (905)
Q Consensus 847 t~kfGF~~i~~ 857 (905)
.+ +||.+...
T Consensus 173 ~~-~gf~~~~~ 182 (202)
T KOG2488|consen 173 HR-LGFVVDEE 182 (202)
T ss_pred HH-cCcccCCC
Confidence 99 99988765
No 102
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.69 E-value=0.0053 Score=61.61 Aligned_cols=25 Identities=40% Similarity=1.132 Sum_probs=22.7
Q ss_pred ccccccCC--CCCCCCCCccccccccc
Q 002579 547 AFHKECAS--LSSIPQGDWYCKYCQNM 571 (905)
Q Consensus 547 afH~~CL~--L~~vP~g~W~Cp~C~~~ 571 (905)
+||+.||+ |+.+|+|+|+||.|...
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~ 27 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVE 27 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCC
Confidence 59999996 88999999999999864
No 103
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=95.04 E-value=0.011 Score=68.65 Aligned_cols=49 Identities=27% Similarity=0.771 Sum_probs=39.0
Q ss_pred cccccCcCCCcCcccccCCCCceEeccCCCcccccccCCC------CCCCCCCccccccccc
Q 002579 516 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASL------SSIPQGDWYCKYCQNM 571 (905)
Q Consensus 516 ~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~L------~~vP~g~W~Cp~C~~~ 571 (905)
.|.+|.....+ .++.||.|++|..-||+.|... -.-+.+.|||..|...
T Consensus 170 qc~vC~~g~~~-------~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 170 QCSVCYCGGPG-------AGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred eeeeeecCCcC-------ccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 48888866555 4669999999999999999961 2336788999999864
No 104
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=94.70 E-value=0.014 Score=70.23 Aligned_cols=51 Identities=31% Similarity=0.802 Sum_probs=42.8
Q ss_pred cCCceeeccCCCCCCCCCCCCceeecCCCCCcCCcCCCCcCcCCcccCCCCCCceecCCccc
Q 002579 613 ELSGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 674 (905)
Q Consensus 613 e~~~C~vC~~~df~~sg~~~~~LI~CDqC~rayHv~CL~p~~~~~L~evP~g~WfCp~~C~~ 674 (905)
+...|.+|+.+| ......|++||.|.-..|..|. .+.++|.+.|.| ..|..
T Consensus 270 edviCDvCrspD----~e~~neMVfCd~Cn~cVHqaCy------GIle~p~gpWlC-r~Cal 320 (893)
T KOG0954|consen 270 EDVICDVCRSPD----SEEANEMVFCDKCNICVHQACY------GILEVPEGPWLC-RTCAL 320 (893)
T ss_pred ccceeceecCCC----ccccceeEEeccchhHHHHhhh------ceeecCCCCeee-hhccc
Confidence 445699999886 3457899999999999999999 467899999999 78854
No 105
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=94.44 E-value=0.036 Score=57.89 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=53.1
Q ss_pred eEEEeeeEeecCccCCChhHHHHHHHHHHhhhcC-ccEEEecc---hhhHHHHHHhccCcEEcCHHH
Q 002579 797 VAELPLVATSKINHGKGYFQLLFACIEKLLSFLR-VKSIVLPA---AEEAESIWTDKFGFKKIDPEL 859 (905)
Q Consensus 797 vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lg-V~~LvLpA---~~~a~~~wt~kfGF~~i~~~~ 859 (905)
+.-|-.++|.+.||.+|+|+.|++.+.+.....+ .+++.|-+ -..|..||++ +||+.+....
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~-~gF~~~~~~~ 154 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEK-RGFEIVERLK 154 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHh-cCceEeeccc
Confidence 5778999999999999999999999999999998 66666654 4468999999 9999987643
No 106
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=94.34 E-value=0.015 Score=67.13 Aligned_cols=47 Identities=32% Similarity=0.826 Sum_probs=37.9
Q ss_pred CceeeccCCCCCCCCCCCCceeecCCCCCcCCcCCCCcCcCCcccCCCCCCceecCCc
Q 002579 615 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDC 672 (905)
Q Consensus 615 ~~C~vC~~~df~~sg~~~~~LI~CDqC~rayHv~CL~p~~~~~L~evP~g~WfCp~~C 672 (905)
+.|.+|...+ ..+.++++.||.|+-..|..|.. ..-+|+|.|+| ..|
T Consensus 194 ~~C~~c~~t~----~eN~naiVfCdgC~i~VHq~CYG------I~f~peG~WlC-rkC 240 (669)
T COG5141 194 DICTKCTSTH----NENSNAIVFCDGCEICVHQSCYG------IQFLPEGFWLC-RKC 240 (669)
T ss_pred hhhHhccccc----cCCcceEEEecCcchhhhhhccc------ceecCcchhhh-hhh
Confidence 5688898764 23467899999999999999994 44678999999 666
No 107
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=94.22 E-value=0.011 Score=76.90 Aligned_cols=52 Identities=35% Similarity=0.899 Sum_probs=43.6
Q ss_pred CCCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCC--CCCCCCCCcccccccccc
Q 002579 512 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMF 572 (905)
Q Consensus 512 ~~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~--L~~vP~g~W~Cp~C~~~~ 572 (905)
.....|.+|.... +...|+.||.|...||..|+. +..+|.++|+||.|+...
T Consensus 1106 ~~~~~c~~cr~k~---------~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKK---------QDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cchhhhhhhhhcc---------cchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 4467899999642 345899999999999999996 789999999999998653
No 108
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=94.08 E-value=0.075 Score=60.01 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=66.7
Q ss_pred CceecceEEEEEeeCCeEEEEEEEEEe------CC---eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEec
Q 002579 767 GQEFGGMYCAILTVNSSVVSAGILRVF------GQ---EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP 837 (905)
Q Consensus 767 ~~~f~Gfy~~VL~~~~~vVsaA~lri~------g~---~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLp 837 (905)
.+++.++|.+ +.+.++++- |++. |. ..|-|-.||+.|+|||+|+-|+|+....+..++-|+.-.+|-
T Consensus 35 il~~~n~~vi--~~nqkl~s~--L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~ 110 (389)
T COG4552 35 ILAEPNSYVI--YMNQKLASR--LHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALH 110 (389)
T ss_pred hccCCcceEE--eehhhhhhc--ccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEec
Confidence 4566777765 777777653 3333 43 356788899999999999999999999999999999988887
Q ss_pred chhhHHHHHHhccCcEEcCH
Q 002579 838 AAEEAESIWTDKFGFKKIDP 857 (905)
Q Consensus 838 A~~~a~~~wt~kfGF~~i~~ 857 (905)
+.. .+||.+ |||..-+.
T Consensus 111 P~s--~~iYrK-fGye~asn 127 (389)
T COG4552 111 PFS--GGIYRK-FGYEYASN 127 (389)
T ss_pred cCc--hhhHhh-ccccccce
Confidence 654 569999 99988765
No 109
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=93.99 E-value=0.39 Score=45.25 Aligned_cols=65 Identities=8% Similarity=-0.167 Sum_probs=57.3
Q ss_pred eEEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecc
Q 002579 773 MYCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPA 838 (905)
Q Consensus 773 fy~~VL~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA 838 (905)
...++++.+|++||++.....+ +.+..-..+++++|++.+.|..|+..+.+.+.+.|++.+-+..
T Consensus 71 ~~l~~~~~~g~~va~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~ 135 (142)
T PF13480_consen 71 LRLFVLYDGGEPVAFALGFRHG-GTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGG 135 (142)
T ss_pred EEEEEEEECCEEEEEEEEEEEC-CEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 5666778899999999876655 5888999999999999999999999999999999999988654
No 110
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=93.14 E-value=0.12 Score=52.58 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=47.3
Q ss_pred eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEe---cchhhHHHHHHhccCcEEc
Q 002579 796 EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVL---PAAEEAESIWTDKFGFKKI 855 (905)
Q Consensus 796 ~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvL---pA~~~a~~~wt~kfGF~~i 855 (905)
.-+++--++|.|+||++|++..||+.+|+.....+.=-+.| -.-.-|..+|++ |||.+.
T Consensus 68 wh~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkk-LGY~~Y 129 (173)
T KOG3234|consen 68 WHGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKK-LGYSVY 129 (173)
T ss_pred eeeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHh-cCceEE
Confidence 34678889999999999999999999999987775444333 344569999999 999763
No 111
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=92.92 E-value=0.29 Score=50.05 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=63.2
Q ss_pred EEe-eCCeEEEEEEEEEeC-----CeeEEEeeeEeecCccCCChhHHHHHHHHH-HhhhcCccEEEecchh---hHHHHH
Q 002579 777 ILT-VNSSVVSAGILRVFG-----QEVAELPLVATSKINHGKGYFQLLFACIEK-LLSFLRVKSIVLPAAE---EAESIW 846 (905)
Q Consensus 777 VL~-~~~~vVsaA~lri~g-----~~vAElp~VAT~~~yRgqG~gr~L~~~IE~-~L~~lgV~~LvLpA~~---~a~~~w 846 (905)
|.+ .+|.|||-.....+. ..-.+|-.+||...||+.|+++.||..-.+ ++...+.+++-|.-+. .|...|
T Consensus 45 VA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY 124 (193)
T KOG3235|consen 45 VAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLY 124 (193)
T ss_pred EEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhh
Confidence 445 578999977665554 125689999999999999999999986554 4556677788887654 589999
Q ss_pred HhccCcEEcCH
Q 002579 847 TDKFGFKKIDP 857 (905)
Q Consensus 847 t~kfGF~~i~~ 857 (905)
++.+||.+.+-
T Consensus 125 ~~tl~F~v~ev 135 (193)
T KOG3235|consen 125 KNTLGFVVCEV 135 (193)
T ss_pred hhccceEEeec
Confidence 98899998765
No 112
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=92.76 E-value=0.6 Score=50.46 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=70.2
Q ss_pred ccCCCceecceEEEEEe-eCCeEEEEEEEEEe------------------------------CCeeEEEeeeEeecCccC
Q 002579 763 RNLRGQEFGGMYCAILT-VNSSVVSAGILRVF------------------------------GQEVAELPLVATSKINHG 811 (905)
Q Consensus 763 ~~~~~~~f~Gfy~~VL~-~~~~vVsaA~lri~------------------------------g~~vAElp~VAT~~~yRg 811 (905)
.++...|-..-|.++.. .+|++||+++|... +..++|+-++|++++||+
T Consensus 46 ~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~ 125 (241)
T TIGR03694 46 LETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRR 125 (241)
T ss_pred CcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccHHHHhccccchhhcCccccCCCceEEeehheECHhHhC
Confidence 34444444455655554 35899999998642 136999999999999997
Q ss_pred C--------C--------------------hhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCc--EEcCH
Q 002579 812 K--------G--------------------YFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGF--KKIDP 857 (905)
Q Consensus 812 q--------G--------------------~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF--~~i~~ 857 (905)
. | +...|+.++-+.+...|+++++.-+.+....++.+ +|| +.+++
T Consensus 126 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~l~r~l~r-~G~~~~~lG~ 200 (241)
T TIGR03694 126 RKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANGITHWYAIMEPRLARLLSR-FGIQFRQVGP 200 (241)
T ss_pred CcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHHH-hCCceEEcCC
Confidence 4 2 44679999999999999999998888888887865 885 45554
No 113
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=92.46 E-value=0.72 Score=48.18 Aligned_cols=83 Identities=18% Similarity=0.228 Sum_probs=59.1
Q ss_pred eEEEEEeeCCeEEEEEEEEEeC-------CeeEEEeeeEeecCccCCChhHHHHHHHH-HHhhhcCccEEEecchhhHHH
Q 002579 773 MYCAILTVNSSVVSAGILRVFG-------QEVAELPLVATSKINHGKGYFQLLFACIE-KLLSFLRVKSIVLPAAEEAES 844 (905)
Q Consensus 773 fy~~VL~~~~~vVsaA~lri~g-------~~vAElp~VAT~~~yRgqG~gr~L~~~IE-~~L~~lgV~~LvLpA~~~a~~ 844 (905)
||.+++.-.+.+|++..+-.+. ..+--+.+.=+.|+|||+|+++ |+..+. +.+... =...++-+...+..
T Consensus 47 l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~k-l~~~~~~~~~~~~-~~N~~~~~~~~~~~ 124 (181)
T PF06852_consen 47 LVLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMK-LQDDICMDELDSV-DDNSVAQGNVKMSN 124 (181)
T ss_pred EEEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHH-HHHHHHHHHhccC-CCceeeecCHHHHH
Confidence 3455444456788877664332 2377777777999999999996 555554 445453 34567778889999
Q ss_pred HHHhccCcEEcCH
Q 002579 845 IWTDKFGFKKIDP 857 (905)
Q Consensus 845 ~wt~kfGF~~i~~ 857 (905)
+|.+-|||..++.
T Consensus 125 ~w~k~~G~~~~~h 137 (181)
T PF06852_consen 125 FWHKMFGFDDYGH 137 (181)
T ss_pred HHHHHhCCCCCcc
Confidence 9999999988887
No 114
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=92.21 E-value=0.021 Score=44.38 Aligned_cols=33 Identities=36% Similarity=1.110 Sum_probs=17.8
Q ss_pred CceeecCCCCCcCCcCCCCcCcCCcccCCCCC-CceecCCc
Q 002579 633 RTILLCDQCEREFHVGCLKKHKMADLRELPKG-KWFCCMDC 672 (905)
Q Consensus 633 ~~LI~CDqC~rayHv~CL~p~~~~~L~evP~g-~WfCp~~C 672 (905)
+.||.|+.|.-..|..|.. +..+|.+ .|+| .-|
T Consensus 2 n~ll~C~~C~v~VH~~CYG------v~~~~~~~~W~C-~~C 35 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG------VSEVPDGDDWLC-DRC 35 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-------SS--SS------HHH
T ss_pred CceEEeCCCCCcCChhhCC------cccCCCCCcEEC-CcC
Confidence 4699999999999999995 3445555 7999 555
No 115
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=92.06 E-value=0.12 Score=60.05 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=51.0
Q ss_pred EEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCcEEcCH
Q 002579 790 LRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDP 857 (905)
Q Consensus 790 lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF~~i~~ 857 (905)
|+|+|..+..=. ....+|+||||+.||+..|+.+++-|.+++.+=+-..+..-|.+ |||...++
T Consensus 446 lhvyg~~vpig~---~~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~k-~GY~~~gp 509 (515)
T COG1243 446 LHVYGSEVPIGK---REDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYRK-LGYELDGP 509 (515)
T ss_pred hhcccccccccc---CcchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHHH-hCccccCC
Confidence 456665432211 25789999999999999999999999999888777888888887 99987664
No 116
>smart00258 SAND SAND domain.
Probab=91.77 E-value=0.13 Score=46.12 Aligned_cols=50 Identities=24% Similarity=0.362 Sum_probs=40.2
Q ss_pred eCCeEEeeCcCCCCceeeCcchhhhcccc-cccCccccccccCCccHHHHHHH
Q 002579 260 RDGGILCSCSLCNGCRVIPPSKFEIHACK-QYRRASQYICFENGKSLLEVLRA 311 (905)
Q Consensus 260 ~~~Gi~C~C~~C~~~~v~s~s~FE~HAG~-~~~~p~~~I~lenG~sL~~v~~~ 311 (905)
...|+.+-|..+++ +-+||++||.|||. ++++=-..|.. ||.+|..++++
T Consensus 19 f~~G~~~kCI~~~~-~~~TP~eFe~~~g~~~~K~WK~sIR~-~g~~Lr~L~~~ 69 (73)
T smart00258 19 FKCGISVKCIQYED-KWFTPKEFEIEGGKGKSKDWKRSIRC-GGSSLRTLMEN 69 (73)
T ss_pred hhcCcccCCccCCC-EEEChHHHHhhcCCcccCCcchheeE-CCccHHHHHHc
Confidence 45599999999886 89999999999996 46665566654 69999998875
No 117
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=89.71 E-value=0.1 Score=47.68 Aligned_cols=55 Identities=27% Similarity=0.470 Sum_probs=39.0
Q ss_pred eeEEEe-----CCeEEeeCcCCCCceeeCcchhhhcccccc-cCccccccccCCccHHHHHHH
Q 002579 255 LRGIIR-----DGGILCSCSLCNGCRVIPPSKFEIHACKQY-RRASQYICFENGKSLLEVLRA 311 (905)
Q Consensus 255 l~G~i~-----~~Gi~C~C~~C~~~~v~s~s~FE~HAG~~~-~~p~~~I~lenG~sL~~v~~~ 311 (905)
+.|++. ..|+...|-.++ .+-+||++||.|||..+ ++=-..|.. +|.+|..++++
T Consensus 18 ~~G~L~~~k~~~~g~~~kCI~~~-g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~li~~ 78 (82)
T PF01342_consen 18 VKGTLYKKKFVKQGICGKCIQCE-GRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGKLIEK 78 (82)
T ss_dssp EEEEEEHHHH-TTGTTSS-EEET-TEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHHHHHT
T ss_pred eEEEEEHHHhhcccccCceEeeC-CcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHHHHhh
Confidence 355554 445556677777 57999999999999875 446667877 89999988864
No 118
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=88.29 E-value=0.73 Score=51.18 Aligned_cols=69 Identities=16% Similarity=0.230 Sum_probs=46.3
Q ss_pred CchhhhhhhcCCCCCceEEEEcCCcccceeeeEEEeCC------eEEeeCcCCCCceeeCcchhhhcccccc-cCccccc
Q 002579 225 PMTVTELFETGLLDGVSVVYMGGIKFQASGLRGIIRDG------GILCSCSLCNGCRVIPPSKFEIHACKQY-RRASQYI 297 (905)
Q Consensus 225 p~~vk~Ll~tglleg~~V~Y~~~~~~~~~~l~G~i~~~------Gi~C~C~~C~~~~v~s~s~FE~HAG~~~-~~p~~~I 297 (905)
+.+...-..+.+++.+|-.+-.+..-++....|+++.- -|+|-|- -.-+||.+|=.|||... -||-.||
T Consensus 208 ~~~~~~~~~~~~~~~mp~v~t~g~gpng~~i~g~ly~y~~~~~v~i~c~ch----g~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 208 RTNSGGDGSRNMMEDMPCVSTTGDGPNGKRIEGFLYKYGKGEEVRIVCVCH----GSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred cccccccccccccccCCceeeccCCCCCceeeEEEEEecCCCeEEEEEEec----CCCCCHHHHHHhcCCCCcCCchhcc
Confidence 34444445566677777666543222344556666544 3888886 46899999999999874 5899998
No 119
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=88.08 E-value=3 Score=43.45 Aligned_cols=83 Identities=17% Similarity=0.099 Sum_probs=63.6
Q ss_pred cceEEEEEeeCCeEEEEEEEEEeC---------------------CeeEEEeeeEeecCccC------CChhHHHHHHHH
Q 002579 771 GGMYCAILTVNSSVVSAGILRVFG---------------------QEVAELPLVATSKINHG------KGYFQLLFACIE 823 (905)
Q Consensus 771 ~Gfy~~VL~~~~~vVsaA~lri~g---------------------~~vAElp~VAT~~~yRg------qG~gr~L~~~IE 823 (905)
.-.|.+++. +|+++|+++|.... .+++|+=+++++++.++ .-+...|+.++-
T Consensus 44 ~~~ylv~~~-~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~ 122 (182)
T PF00765_consen 44 DAVYLVALD-DGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMV 122 (182)
T ss_dssp T-EEEEEEE-TTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHH
T ss_pred CCeEEEEEE-CCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHHHHHHHHHH
Confidence 347877765 59999999987543 57999999999988532 236789999999
Q ss_pred HHhhhcCccEEEecchhhHHHHHHhccCcEEc
Q 002579 824 KLLSFLRVKSIVLPAAEEAESIWTDKFGFKKI 855 (905)
Q Consensus 824 ~~L~~lgV~~LvLpA~~~a~~~wt~kfGF~~i 855 (905)
+.+...|+++++.=...-.+.++.+ +||...
T Consensus 123 e~a~~~gi~~~v~V~~~~~~r~l~r-~G~~~~ 153 (182)
T PF00765_consen 123 EFALSNGIRHIVGVVDPAMERILRR-AGWPVR 153 (182)
T ss_dssp HHHHCTT-SEEEEEEEHHHHHHHHH-CT-EEE
T ss_pred HHHHHCCCCEEEEEEChHHHHHHHH-cCCceE
Confidence 9999999999998777778888887 898753
No 120
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=87.51 E-value=3.5 Score=43.70 Aligned_cols=118 Identities=18% Similarity=0.100 Sum_probs=76.5
Q ss_pred HHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCcee-cceEEEEEeeCCeEEEEEEEEEe---------------
Q 002579 730 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEF-GGMYCAILTVNSSVVSAGILRVF--------------- 793 (905)
Q Consensus 730 ~kLs~Al~If~EcFdPiid~rSgrDLIp~MVy~~~~~~~~f-~Gfy~~VL~~~~~vVsaA~lri~--------------- 793 (905)
..+.++...=++.|. + +=|=++ +. --|.+....|- .-.|.+....+|++||+++|-..
T Consensus 16 ~~l~~~~rLR~~VF~---~-elgW~~-~~-~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~ 89 (207)
T PRK13834 16 SLLKQMHRLRARVFG---G-RLGWDV-SI-TDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLP 89 (207)
T ss_pred HHHHHHHHHHHHHhc---c-ccCCCC-CC-CCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcC
Confidence 345666666566663 1 112222 11 12333333433 33677666678899999987221
Q ss_pred ------CCeeEEEeeeEeecCcc---CCC----hhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCcEE
Q 002579 794 ------GQEVAELPLVATSKINH---GKG----YFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK 854 (905)
Q Consensus 794 ------g~~vAElp~VAT~~~yR---gqG----~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF~~ 854 (905)
..+++|+-++|++++++ +.+ +...|+.++-+.+...|+++++.-.....+.++.+ +||..
T Consensus 90 ~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~r-~G~~~ 162 (207)
T PRK13834 90 AGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDLRFERILAR-AGWPM 162 (207)
T ss_pred CCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHH-cCCCe
Confidence 25799999999999863 222 55789999999999999999986666666677755 88643
No 121
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=85.96 E-value=0.38 Score=44.44 Aligned_cols=59 Identities=19% Similarity=0.349 Sum_probs=35.2
Q ss_pred CCccccccCcCCCcCc--ccccCCCCceEeccCCCcccccccCC-CCCCCCCCcccccccccc
Q 002579 513 LGIICHCCNSEVSPSQ--FEAHADGGNLLPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQNMF 572 (905)
Q Consensus 513 ~gi~C~~C~~~~SpS~--FE~HAdgG~LL~CDgC~~afH~~CL~-L~~vP~g~W~Cp~C~~~~ 572 (905)
+++.|++|...+...- ...-.|.-.++.+ .|.+.||..|+- .-+-....-.||.|++.+
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeec-cCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 4788999997543110 0011122244444 499999999994 212223456999999754
No 122
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=85.31 E-value=1.4 Score=45.58 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=53.9
Q ss_pred cceEEEEEeeCCeEEEEEEEEEeCCeeEEEee-----eEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhh
Q 002579 771 GGMYCAILTVNSSVVSAGILRVFGQEVAELPL-----VATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEE 841 (905)
Q Consensus 771 ~Gfy~~VL~~~~~vVsaA~lri~g~~vAElp~-----VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~ 841 (905)
.-.|-+|=+ ++++||.-.+|-.=.+ ..++. -+|+|.-||+||++.++.-..+.++.+|++.+.+-+..+
T Consensus 68 ~~~y~~v~~-d~~ivG~i~lRh~Ln~-~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~d 141 (174)
T COG3981 68 ASTYWAVDE-DGQIVGFINLRHQLND-FLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKD 141 (174)
T ss_pred ceeEEEEec-CCcEEEEEEeeeecch-HHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 335666655 8999999999865432 22221 358999999999999999999999999999998877654
No 123
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=85.10 E-value=0.24 Score=44.01 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=32.8
Q ss_pred CccccccCcCCCcCcccccCCCC-ceEeccCCCcccccccCCCCCCCCCCccccccc
Q 002579 514 GIICHCCNSEVSPSQFEAHADGG-NLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQ 569 (905)
Q Consensus 514 gi~C~~C~~~~SpS~FE~HAdgG-~LL~CDgC~~afH~~CL~L~~vP~g~W~Cp~C~ 569 (905)
.+.|.+|...+.....|.-+++. -.+.=..|++.||..|+. .|-.....||.|+
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~--~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCIS--QWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHH--HHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHH--HHHhcCCcCCCCC
Confidence 34599999877433323222332 333335699999999994 3434455899985
No 124
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=84.93 E-value=2 Score=40.67 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=41.4
Q ss_pred eeCCeEEEEEEEEEeC--CeeEEEeeeEeecCccCCChhHHHHHHHHHHh
Q 002579 779 TVNSSVVSAGILRVFG--QEVAELPLVATSKINHGKGYFQLLFACIEKLL 826 (905)
Q Consensus 779 ~~~~~vVsaA~lri~g--~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L 826 (905)
+.++...++|.+..-+ .+++-|-.+|+.+..||+|+++.|+.+|-+..
T Consensus 14 y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~ 63 (99)
T cd04264 14 YLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF 63 (99)
T ss_pred EEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 5667788888887655 58999999999999999999999999998773
No 125
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=83.92 E-value=1 Score=52.60 Aligned_cols=55 Identities=22% Similarity=0.591 Sum_probs=37.8
Q ss_pred eeeccCCCCCCCCCCCCceeecCCCCCcCCcCCCCcCcCCc----ccC---CCCCCceecCCccch
Q 002579 617 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMAD----LRE---LPKGKWFCCMDCSRI 675 (905)
Q Consensus 617 C~vC~~~df~~sg~~~~~LI~CDqC~rayHv~CL~p~~~~~----L~e---vP~g~WfCp~~C~~I 675 (905)
|.+|.+.|+.. ++-.+|.||.|..|.|++|.=.+.+.. ... ..+..++| ..|.+.
T Consensus 131 C~iC~kfD~~~---n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C-~~C~~~ 192 (446)
T PF07227_consen 131 CCICSKFDDNK---NTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHC-RACGKT 192 (446)
T ss_pred ccccCCcccCC---CCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEc-cCCCCh
Confidence 88999887653 466789999999999999965443211 111 12446777 889654
No 126
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=83.20 E-value=0.11 Score=41.24 Aligned_cols=43 Identities=26% Similarity=0.657 Sum_probs=27.7
Q ss_pred cccccCcCCCcCcccccCCCCceEeccCCCcccccccCCCCCCCCCCccccccc
Q 002579 516 ICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQ 569 (905)
Q Consensus 516 ~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~L~~vP~g~W~Cp~C~ 569 (905)
.|.+|...+. ++..++... |.+.||..|+. .|-.....||.|+
T Consensus 2 ~C~IC~~~~~--------~~~~~~~l~-C~H~fh~~Ci~--~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFE--------DGEKVVKLP-CGHVFHRSCIK--EWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHH--------TTSCEEEET-TSEEEEHHHHH--HHHHHSSB-TTTH
T ss_pred CCcCCChhhc--------CCCeEEEcc-CCCeeCHHHHH--HHHHhCCcCCccC
Confidence 5889997654 234455444 99999999994 2222234898885
No 127
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=81.49 E-value=1 Score=38.34 Aligned_cols=34 Identities=26% Similarity=0.833 Sum_probs=29.9
Q ss_pred CCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCC
Q 002579 513 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS 554 (905)
Q Consensus 513 ~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~ 554 (905)
.+-.|.+|++.+. ++++++.|..|...||..|..
T Consensus 4 ~~~~C~~Cg~~~~--------~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 4 EGCKCPVCGKKFK--------DGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred cCccChhhCCccc--------CCCCEEECCCCCCcccHHHHh
Confidence 4568999999877 589999999999999999983
No 128
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=78.79 E-value=3.3 Score=43.12 Aligned_cols=51 Identities=20% Similarity=0.050 Sum_probs=44.6
Q ss_pred eEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHh
Q 002579 797 VAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTD 848 (905)
Q Consensus 797 vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~ 848 (905)
+||+.+.||+++.+|.|+++.+ ..+--.|+.|||.--|---+..+....++
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R 135 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVER 135 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHHH
Confidence 8999999999999999999976 68889999999998777777777777776
No 129
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=76.78 E-value=6.9 Score=43.68 Aligned_cols=81 Identities=9% Similarity=0.041 Sum_probs=62.7
Q ss_pred EEEEe-eCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHH--HHhccC
Q 002579 775 CAILT-VNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESI--WTDKFG 851 (905)
Q Consensus 775 ~~VL~-~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~--wt~kfG 851 (905)
.++++ .+|++|+++.+..+++ .+.....++.++||+.+-+-.|+-.+.+.+.+.|++++-+.....-.+. ++++||
T Consensus 197 l~~a~~~~g~~va~~l~~~~~~-~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G 275 (330)
T TIGR03019 197 VLTVRLGDGVVASAVLSFYFRD-EVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWG 275 (330)
T ss_pred EEEEEeCCCCEEEEEEEEEeCC-EEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCC
Confidence 34456 6899999888767665 4455588899999999999999999999999999999998765332233 556689
Q ss_pred cEEcC
Q 002579 852 FKKID 856 (905)
Q Consensus 852 F~~i~ 856 (905)
|++..
T Consensus 276 ~~~~~ 280 (330)
T TIGR03019 276 FEPQP 280 (330)
T ss_pred Ceecc
Confidence 88654
No 130
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=75.00 E-value=6 Score=37.56 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=37.8
Q ss_pred eeCCeEEEEEEEEEeC-CeeEEEeeeEeecCccCCChhHHHHHHHHHHh
Q 002579 779 TVNSSVVSAGILRVFG-QEVAELPLVATSKINHGKGYFQLLFACIEKLL 826 (905)
Q Consensus 779 ~~~~~vVsaA~lri~g-~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L 826 (905)
+.++..=++|.+..-+ .+++-|-.+|+.+..||+|+++.|+.+|-+..
T Consensus 15 y~~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~ 63 (99)
T cd04265 15 YLSEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF 63 (99)
T ss_pred EEeCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 4444555566665433 47999999999999999999999999998774
No 131
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=74.85 E-value=1.9 Score=38.19 Aligned_cols=52 Identities=23% Similarity=0.400 Sum_probs=19.7
Q ss_pred ccccccCcCCCcCcccccCCCCceEecc--CCCcccccccCC--C---CC----CCCCCcccccccccc
Q 002579 515 IICHCCNSEVSPSQFEAHADGGNLLPCD--GCPRAFHKECAS--L---SS----IPQGDWYCKYCQNMF 572 (905)
Q Consensus 515 i~C~~C~~~~SpS~FE~HAdgG~LL~CD--gC~~afH~~CL~--L---~~----vP~g~W~Cp~C~~~~ 572 (905)
..|.+|...... .+.-..+.|+ .|...||..||. + +. ...-.+-||.|...+
T Consensus 3 ~~C~IC~~~~~~------~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 3 LECGICYSYRLD------DGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp -S-SSS--SS-T------T-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCcCCcEecC------CCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 569999965431 0122348898 899999999994 1 11 111246799998654
No 132
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=71.08 E-value=1.7 Score=40.91 Aligned_cols=32 Identities=25% Similarity=0.679 Sum_probs=27.3
Q ss_pred CceeeccCCCCCCCCCCCCceeecCC--CCCcCCcCCCCcCc
Q 002579 615 SGCLLCRGCDFSKSGFGPRTILLCDQ--CEREFHVGCLKKHK 654 (905)
Q Consensus 615 ~~C~vC~~~df~~sg~~~~~LI~CDq--C~rayHv~CL~p~~ 654 (905)
..|.+|+.. .+..++|.. |...||+.|....+
T Consensus 56 ~~C~iC~~~--------~G~~i~C~~~~C~~~fH~~CA~~~g 89 (110)
T PF13832_consen 56 LKCSICGKS--------GGACIKCSHPGCSTAFHPTCARKAG 89 (110)
T ss_pred CcCcCCCCC--------CceeEEcCCCCCCcCCCHHHHHHCC
Confidence 459999974 578999998 99999999997755
No 133
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=70.32 E-value=6 Score=45.04 Aligned_cols=65 Identities=17% Similarity=0.290 Sum_probs=45.8
Q ss_pred EEEEeCCeeEEEeeeEeec-CccCCChhHHHHHHHHHHhhhc-CccEEEecchhhHHHHHHhccCcEEcCH
Q 002579 789 ILRVFGQEVAELPLVATSK-INHGKGYFQLLFACIEKLLSFL-RVKSIVLPAAEEAESIWTDKFGFKKIDP 857 (905)
Q Consensus 789 ~lri~g~~vAElp~VAT~~-~yRgqG~gr~L~~~IE~~L~~l-gV~~LvLpA~~~a~~~wt~kfGF~~i~~ 857 (905)
-||++|.- +|.-+-++ .||.||||.+||++.|+.+++- |-..+-+=+-......|.+ |||..-++
T Consensus 481 ELHVYGs~---vpv~~rDp~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~k-lGY~LdGP 547 (554)
T KOG2535|consen 481 ELHVYGSV---VPVHSRDPTKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYRK-LGYELDGP 547 (554)
T ss_pred eeeeccee---eecccCCchhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHHh-hCeeecCh
Confidence 35666642 23333333 4999999999999999999865 4445665566667777777 99987665
No 134
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=69.82 E-value=2.4 Score=54.03 Aligned_cols=45 Identities=27% Similarity=0.742 Sum_probs=38.9
Q ss_pred CceeeccCCCCCCCCCCCCceeecCCCCCcCCcCCCCcCcCCcccCCCCCCceecCCcc
Q 002579 615 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCS 673 (905)
Q Consensus 615 ~~C~vC~~~df~~sg~~~~~LI~CDqC~rayHv~CL~p~~~~~L~evP~g~WfCp~~C~ 673 (905)
..|.+|.+ .+.++.|..|++.||..|+.+ ++.++|...|-| .-|.
T Consensus 345 dhcrf~~d---------~~~~lc~Et~prvvhlEcv~h----P~~~~~s~~~e~-evc~ 389 (1414)
T KOG1473|consen 345 DHCRFCHD---------LGDLLCCETCPRVVHLECVFH----PRFAVPSAFWEC-EVCN 389 (1414)
T ss_pred ccccccCc---------ccceeecccCCceEEeeecCC----ccccCCCccchh-hhhh
Confidence 45999984 568999999999999999987 788899999999 6774
No 135
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=68.88 E-value=4.9 Score=45.18 Aligned_cols=103 Identities=17% Similarity=0.274 Sum_probs=57.8
Q ss_pred CCCceEeccCCCcccccccCCCCCCCCCCccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccc
Q 002579 534 DGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKRFLQHDANAVEAGRVSGVDSVEQITKRCIRIVKNLEAE 613 (905)
Q Consensus 534 dgG~LL~CDgC~~afH~~CL~L~~vP~g~W~Cp~C~~~~~kek~v~~n~nava~Gr~~Gvd~ieqI~~R~iR~~kd~e~e 613 (905)
+++....|-+|-..+|-.-..+.-+-.+.+.|--|..++.+-.. +. ...+..++..+ .. .+ ...
T Consensus 64 ~~~~agvC~~C~~~CH~~H~lveL~tKR~FrCDCg~sk~g~~sc---~l--~~~~~~~n~~N---~Y----Nh----Nfq 127 (345)
T KOG2752|consen 64 APEMAGVCYACSLSCHDGHELVELYTKRNFRCDCGNSKFGRCSC---NL--LEDKDAENSEN---LY----NH----NFQ 127 (345)
T ss_pred ChhhceeEEEeeeeecCCceeeeccccCCccccccccccccccc---cc--ccccccccchh---hh----hh----hhc
Confidence 45678889999888887777666666778888766665543211 00 00000000000 00 00 001
Q ss_pred CCceeeccCCCCCCCCCCCCceeecCCCCCcCC-cCCCCcC
Q 002579 614 LSGCLLCRGCDFSKSGFGPRTILLCDQCEREFH-VGCLKKH 653 (905)
Q Consensus 614 ~~~C~vC~~~df~~sg~~~~~LI~CDqC~rayH-v~CL~p~ 653 (905)
..+|. |........-..++.|++|--|+-||| -+|++..
T Consensus 128 G~~C~-Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 128 GLFCK-CDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred ceeEE-ecCCCCCccccccceeeeEEeccchhcccccCccc
Confidence 12343 555432211234678999999999999 8898764
No 136
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=67.70 E-value=3.4 Score=35.31 Aligned_cols=34 Identities=24% Similarity=0.592 Sum_probs=27.5
Q ss_pred CceeeccCCCCCCCCCCCCceeecCCCCCcCCcCCCCcC
Q 002579 615 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKH 653 (905)
Q Consensus 615 ~~C~vC~~~df~~sg~~~~~LI~CDqC~rayHv~CL~p~ 653 (905)
..|.+|++.- ...+.++.|..|...||-.|....
T Consensus 6 ~~C~~Cg~~~-----~~~dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 6 CKCPVCGKKF-----KDGDDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred ccChhhCCcc-----cCCCCEEECCCCCCcccHHHHhhC
Confidence 4599999751 136789999999999999998654
No 137
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=66.59 E-value=15 Score=42.08 Aligned_cols=132 Identities=17% Similarity=0.251 Sum_probs=86.6
Q ss_pred CcceeEccCCCCChhhHHHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEeeCC--eEEEE---
Q 002579 713 DVRWRLLSGKAATPETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNS--SVVSA--- 787 (905)
Q Consensus 713 dikWqlLsgk~~s~e~~~kLs~Al~If~EcFdPiid~rSgrDLIp~MVy~~~~~~~~f~Gfy~~VL~~~~--~vVsa--- 787 (905)
.+.|..+-- .+...|.+..+.+.|.+.--.|+-.--|..+..+ .|-+..-++.--|++.+.+.+ ++|+-
T Consensus 80 gf~W~tldv-----~~~~~l~el~~lL~enyVEd~~~m~rf~Ys~eFl-~Wal~~pg~~~~WHiGVRv~~s~kLVaFIsa 153 (421)
T KOG2779|consen 80 GFRWETLDV-----SDFKDLEELYNLLNENYVEDDDSMFRFDYSPEFL-KWALQPPGWKKEWHIGVRVKSSKKLVAFISA 153 (421)
T ss_pred CceeeccCC-----ccHhHHHHHHhhcccCCCCccccchhhhccHHHH-HhhhcCCCCccceEEEEEEecCCceEEEEec
Confidence 578887632 2334566777777787732222211112222111 122334445556777777653 66663
Q ss_pred --EEEEEeCC--eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCcc------EEEecchhhHHHHHHhcc
Q 002579 788 --GILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVK------SIVLPAAEEAESIWTDKF 850 (905)
Q Consensus 788 --A~lri~g~--~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~------~LvLpA~~~a~~~wt~kf 850 (905)
++|||.+. ..+||-++.+++..|++++.=.|+.+|-+...--||- -++||+-...-.-|.+.+
T Consensus 154 iP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yTaGvvLp~PVstcRY~HRsL 226 (421)
T KOG2779|consen 154 IPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYTAGVVLPKPVSTCRYWHRSL 226 (421)
T ss_pred cccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhhcceeeccccchhhhhhccC
Confidence 57888886 6899999999999999999999999998876666654 478888888888888644
No 138
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=65.82 E-value=2.3 Score=38.47 Aligned_cols=31 Identities=32% Similarity=0.813 Sum_probs=26.0
Q ss_pred ceeeccCCCCCCCCCCCCceeecCC--CCCcCCcCCCCcCc
Q 002579 616 GCLLCRGCDFSKSGFGPRTILLCDQ--CEREFHVGCLKKHK 654 (905)
Q Consensus 616 ~C~vC~~~df~~sg~~~~~LI~CDq--C~rayHv~CL~p~~ 654 (905)
.|.+|++. .|..|.|.. |.+.||+.|....+
T Consensus 38 ~C~~C~~~--------~Ga~i~C~~~~C~~~fH~~CA~~~~ 70 (90)
T PF13771_consen 38 KCSICKKK--------GGACIGCSHPGCSRSFHVPCARKAG 70 (90)
T ss_pred CCcCCCCC--------CCeEEEEeCCCCCcEEChHHHccCC
Confidence 59999963 368999995 99999999998754
No 139
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=64.90 E-value=18 Score=38.26 Aligned_cols=83 Identities=16% Similarity=0.095 Sum_probs=46.6
Q ss_pred HHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecc--eEEEEEeeCCe--EEEEEEEEEeCCeeEEEeeeEe
Q 002579 730 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGG--MYCAILTVNSS--VVSAGILRVFGQEVAELPLVAT 805 (905)
Q Consensus 730 ~kLs~Al~If~EcFdPiid~rSgrDLIp~MVy~~~~~~~~f~G--fy~~VL~~~~~--vVsaA~lri~g~~vAElp~VAT 805 (905)
....+-|-.|-..| +|++|=- .|... ||++.-..++. +||-=+=--...+--.|--|-|
T Consensus 26 ~~yCqnLcLlaKLF---Ld~Ktly--------------ydv~~F~FYVl~e~d~~g~h~vGyFSKEk~s~~~~NLsCIl~ 88 (188)
T PF01853_consen 26 KLYCQNLCLLAKLF---LDHKTLY--------------YDVDPFLFYVLTEKDDDGFHIVGYFSKEKESWDNNNLSCILT 88 (188)
T ss_dssp HHHHHHHHHHHHTT----SSGCCT--------------T-STTEEEEEEEEEETTEEEEEEEEEEESS-TT-EEESEEEE
T ss_pred chHHHHHHHHHHHH---hhCeEEE--------------eecCceEEEEEEEecCccceeEEEEEEEecccCCeeEeehhh
Confidence 55688889999999 3444311 12233 44444333332 3332221111123347778999
Q ss_pred ecCccCCChhHHHHHHHHHHhhhc
Q 002579 806 SKINHGKGYFQLLFACIEKLLSFL 829 (905)
Q Consensus 806 ~~~yRgqG~gr~L~~~IE~~L~~l 829 (905)
.|.||++|||+.|++.==.+.+.-
T Consensus 89 lP~yQrkGyG~~LI~fSY~LSr~e 112 (188)
T PF01853_consen 89 LPPYQRKGYGRFLIDFSYELSRRE 112 (188)
T ss_dssp -GGGTTSSHHHHHHHHHHHHHHHT
T ss_pred cchhhhcchhhhhhhhHHHHhhcc
Confidence 999999999999998755554443
No 140
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=63.30 E-value=59 Score=33.74 Aligned_cols=111 Identities=13% Similarity=0.186 Sum_probs=71.2
Q ss_pred cCcceeEccCCCCChhhHHHHHHHHHhhhhcCCCcccCCCCCCccccccccccC-----CCceecceEEEEEee--CCeE
Q 002579 712 IDVRWRLLSGKAATPETRLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNL-----RGQEFGGMYCAILTV--NSSV 784 (905)
Q Consensus 712 ~dikWqlLsgk~~s~e~~~kLs~Al~If~EcFdPiid~rSgrDLIp~MVy~~~~-----~~~~f~Gfy~~VL~~--~~~v 784 (905)
.+|.|..+. -.+...|.+.-..+.+-+.--- |-.-..-|+.+| .--+|.-.|.+.+.. ++++
T Consensus 22 ~gF~W~~~d-----l~d~~~l~ely~lL~~nYVEDd------d~~fRf~YS~efL~WaL~pPg~~~~whiGVR~~~~~kL 90 (162)
T PF01233_consen 22 DGFEWSTLD-----LNDDEELKELYELLNENYVEDD------DNMFRFDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKL 90 (162)
T ss_dssp TTEEEEE-------TTSHHHHHHHHHHHHHHSSBTT------TSSEEE---HHHHHHHHTSTT--GGGEEEEEETTTTEE
T ss_pred CCCEEEecC-----CCCHHHHHHHHHHHHhcCccCC------cceEEeeCCHHHHhheeeCcCCccceEEEEEECCCCEE
Confidence 368898764 2345567778888888883211 122223444443 233444445555554 5777
Q ss_pred EEE-----EEEEEeCC--eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccE
Q 002579 785 VSA-----GILRVFGQ--EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKS 833 (905)
Q Consensus 785 Vsa-----A~lri~g~--~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~ 833 (905)
||- +.+||.+. ..+||=++.+++.+|.+++.=.|+.+|=+.+-..||-.
T Consensus 91 vgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~q 146 (162)
T PF01233_consen 91 VGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQ 146 (162)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--E
T ss_pred EEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCcee
Confidence 773 57888885 79999999999999999999999999999988888754
No 141
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.58 E-value=6.4 Score=45.09 Aligned_cols=46 Identities=24% Similarity=0.603 Sum_probs=32.1
Q ss_pred ccccccCcCCCcCcccccCCCCceEeccCCCcccccccCC--CCCCCCCCcccccccccc
Q 002579 515 IICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNMF 572 (905)
Q Consensus 515 i~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~--L~~vP~g~W~Cp~C~~~~ 572 (905)
+.|.+|.+.+. .|+.+ -==-|.+.||..|++ |..+ .-+||.|+...
T Consensus 230 ~~CaIClEdY~--------~Gdkl-RiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYE--------KGDKL-RILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccc--------cCCee-eEecCCCchhhccchhhHhhc---CccCCCCCCcC
Confidence 79999998654 23333 335677999999997 3322 34799999754
No 142
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=61.96 E-value=4.2 Score=42.10 Aligned_cols=57 Identities=18% Similarity=0.469 Sum_probs=35.2
Q ss_pred eeeccCCCCCCCCCCCCceeecCCCCCcCCcCCCCcCcC-C-cccCCCCCCc--eecCCccchhH
Q 002579 617 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKM-A-DLRELPKGKW--FCCMDCSRINS 677 (905)
Q Consensus 617 C~vC~~~df~~sg~~~~~LI~CDqC~rayHv~CL~p~~~-~-~L~evP~g~W--fCp~~C~~I~~ 677 (905)
|.+|+..+ .....+.||.|..|..+||-.||.+... + ..+.+-.+.+ -| ..|..++.
T Consensus 2 C~~C~~~g---~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQC-r~Cig~~~ 62 (175)
T PF15446_consen 2 CDTCGYEG---DDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQC-RRCIGIAH 62 (175)
T ss_pred cccccCCC---CCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEec-hhhcChhh
Confidence 77785421 1235679999999999999999987531 1 1223333333 45 56655543
No 143
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=61.66 E-value=12 Score=41.89 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=47.1
Q ss_pred HHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEeeC----CeEEEEEEEEEeCCeeEEEeeeEee
Q 002579 731 LLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVN----SSVVSAGILRVFGQEVAELPLVATS 806 (905)
Q Consensus 731 kLs~Al~If~EcFdPiid~rSgrDLIp~MVy~~~~~~~~f~Gfy~~VL~~~----~~vVsaA~lri~g~~vAElp~VAT~ 806 (905)
...+-|-.|-..| +|++|=- .|...|.-+||... ..+||-=+=--...+--.|--|-|.
T Consensus 102 ~yCqnLcLlaKLF---LdhKtly--------------yDV~~FlFYVl~e~d~~g~h~vGYFSKEK~s~~~nNLaCIltL 164 (290)
T PLN03238 102 VYCQNLCLLAKLF---LDHKTLY--------------YDVDPFLFYVMTEVDDHGSHIVGYFSKEKVSAEDYNLACILTL 164 (290)
T ss_pred hHHHHHHHHHHHh---hcCcccc--------------ccccceEEEEEEEecCCCcEEEEEeceeccccCCCcEEEEEec
Confidence 4467777777778 3554321 13344555555532 2344322211111122457788999
Q ss_pred cCccCCChhHHHHHHHHHHhhhcC
Q 002579 807 KINHGKGYFQLLFACIEKLLSFLR 830 (905)
Q Consensus 807 ~~yRgqG~gr~L~~~IE~~L~~lg 830 (905)
|.||++|||+.|++.-=.+.+.-|
T Consensus 165 PpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 165 PPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred ChhhhccHhHhHHHHHhHHhhccC
Confidence 999999999999986555444333
No 144
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=58.91 E-value=29 Score=34.95 Aligned_cols=60 Identities=13% Similarity=0.247 Sum_probs=45.6
Q ss_pred eeEeecCccCCChhHHHHHHHHHHhhhcCccEEEec----chhhHHHHHHhccCcEEcCHHHHH
Q 002579 802 LVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLP----AAEEAESIWTDKFGFKKIDPELLS 861 (905)
Q Consensus 802 ~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLp----A~~~a~~~wt~kfGF~~i~~~~~~ 861 (905)
+|.|-..-||.|.+|+|...+-..+...|-.+|++- --.+|...+...|||+.+++.++.
T Consensus 89 RvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ih 152 (167)
T COG3818 89 RVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATIH 152 (167)
T ss_pred EEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEEe
Confidence 334444569999999999999999999999988763 233455666666999999986543
No 145
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=58.33 E-value=2.2 Score=49.43 Aligned_cols=35 Identities=26% Similarity=0.539 Sum_probs=20.7
Q ss_pred ceeeccCCCCCCCCCCCCceeecCCCCCcCCcCCCCc
Q 002579 616 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKK 652 (905)
Q Consensus 616 ~C~vC~~~df~~sg~~~~~LI~CDqC~rayHv~CL~p 652 (905)
.|.+|++.-....|.++ .+.=--=++.||++|.+.
T Consensus 396 rCs~C~~PI~P~~G~~e--tvRvvamdr~fHv~CY~C 430 (468)
T KOG1701|consen 396 RCSVCGNPILPRDGKDE--TVRVVAMDRDFHVNCYKC 430 (468)
T ss_pred chhhccCCccCCCCCcc--eEEEEEccccccccceeh
Confidence 49999876544433222 222223368899999864
No 146
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=57.10 E-value=52 Score=32.75 Aligned_cols=61 Identities=5% Similarity=0.012 Sum_probs=49.7
Q ss_pred EEEEEeeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEE
Q 002579 774 YCAILTVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 835 (905)
Q Consensus 774 y~~VL~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~Lv 835 (905)
+.+-...+|++|+||.+.+..+.+.-|-.+= +|++...++|...+..-.+.++.+|.+.+-
T Consensus 40 ~~~~~~~~~kLiav~v~D~l~~glSaVY~fy-DPd~~~~SlG~~~iL~eI~~a~~~~l~y~Y 100 (128)
T PF04377_consen 40 YHLEYRLDGKLIAVAVVDILPDGLSAVYTFY-DPDYSKRSLGTYSILREIELARELGLPYYY 100 (128)
T ss_pred EEEEEEeCCeEEEEEEeecccchhhheeeee-CCCccccCcHHHHHHHHHHHHHHcCCCEEe
Confidence 3344468999999999988877655544443 889999999999888888999999999999
No 147
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=56.17 E-value=8.7 Score=34.46 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=23.2
Q ss_pred EeeeEeecCccCCChhHHHHHHHHHH
Q 002579 800 LPLVATSKINHGKGYFQLLFACIEKL 825 (905)
Q Consensus 800 lp~VAT~~~yRgqG~gr~L~~~IE~~ 825 (905)
|.+|=|.+.+|++|+.++||+++-+.
T Consensus 8 I~RIWV~~~~RR~GIAt~Lld~ar~~ 33 (70)
T PF13880_consen 8 ISRIWVSPSHRRKGIATRLLDAAREN 33 (70)
T ss_pred eEEEEeChhhhhhhHHHHHHHHHHHh
Confidence 66777899999999999999998775
No 148
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=55.94 E-value=35 Score=33.97 Aligned_cols=73 Identities=11% Similarity=0.084 Sum_probs=52.1
Q ss_pred EEEeeCCeEEEEEEEE--EeC-----CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHh
Q 002579 776 AILTVNSSVVSAGILR--VFG-----QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTD 848 (905)
Q Consensus 776 ~VL~~~~~vVsaA~lr--i~g-----~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~ 848 (905)
++...+|.+||-+.+- ++- -.++|+ -+...|||+||||+..+.|-.+...+ .+-.+++--..|.+||++
T Consensus 40 ~~~~~~~~~igf~l~L~~~~~~~~iD~~~~ef---FIi~k~~~~GvGR~aaK~If~~~~g~-w~Va~i~EN~PA~~fwK~ 115 (143)
T COG5628 40 WLFRIGGLPVGFALVLDLAHSPTPIDRAVAEF---FIVRKHRRRGVGRAAAKAIFGSAWGV-WQVATVRENTPARAFWKR 115 (143)
T ss_pred eEEEECCceeeeeeeecccCCCCcccccchhe---EeeehhhccchhHHHHHHHHHHhhce-EEEEEeccCChhHHHHHh
Confidence 4446789999988753 211 134444 34557999999999999998885443 356788888899999998
Q ss_pred ccCcE
Q 002579 849 KFGFK 853 (905)
Q Consensus 849 kfGF~ 853 (905)
+-+.
T Consensus 116 -~~~t 119 (143)
T COG5628 116 -VAET 119 (143)
T ss_pred -hhcc
Confidence 4443
No 149
>PRK00756 acyltransferase NodA; Provisional
Probab=54.10 E-value=21 Score=37.13 Aligned_cols=39 Identities=26% Similarity=0.162 Sum_probs=34.3
Q ss_pred eeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEE
Q 002579 796 EVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 835 (905)
Q Consensus 796 ~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~Lv 835 (905)
=+||+.+.|++++..|+|++..+ ..+--.|+.|||.--|
T Consensus 84 LVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~F 122 (196)
T PRK00756 84 LVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAF 122 (196)
T ss_pred eEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeec
Confidence 38999999999999999999876 6888999999997444
No 150
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=53.16 E-value=30 Score=35.53 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=38.4
Q ss_pred eEEEeeeEeecCccCCChhHHHHHHHHHHhhh-cCccEEEecchh---hHHHHHHhccCcEEc
Q 002579 797 VAELPLVATSKINHGKGYFQLLFACIEKLLSF-LRVKSIVLPAAE---EAESIWTDKFGFKKI 855 (905)
Q Consensus 797 vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~-lgV~~LvLpA~~---~a~~~wt~kfGF~~i 855 (905)
++|+-+.---|..||+|+|+..|.++...+.+ +++-....-... ....+..+ |+|.-+
T Consensus 107 ~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk-~~f~q~ 168 (185)
T KOG4135|consen 107 TGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKK-FLFTQV 168 (185)
T ss_pred eeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHH-hhheee
Confidence 45666677779999999999999988887654 455554443322 23444445 888644
No 151
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=52.88 E-value=12 Score=43.75 Aligned_cols=187 Identities=21% Similarity=0.261 Sum_probs=96.5
Q ss_pred cccccccchhhHHhhhcccccceeEEeEEeeEEEEEEeccCCCCCCcccccchhhhhhhhcccccchHHHHHHHhhhccc
Q 002579 21 LPQAGIQASDCVKAACENVRCKRFKVTKVNGFIVYSRVKRSRFSNSDDLLEDDVIDKRINSKIHEGRINKVVKNVLNENG 100 (905)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (905)
|-+.|++ |||+-. .-.+|+|+-+|--=+.-+-+-...-.++|+- -...|.||..|-+.+..
T Consensus 97 L~~LGl~--Dcve~I---------DAQ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~----GrsFhnGRFvq~lR~ka---- 157 (509)
T KOG1298|consen 97 LSKLGLE--DCVEGI---------DAQRVTGYAIFKDGKEVDLPYPLKNFPSDPS----GRSFHNGRFVQRLRKKA---- 157 (509)
T ss_pred HHHhCHH--HHhhcc---------cceEeeeeEEEeCCceeeccCCCcCCCCCcc----cceeeccHHHHHHHHHH----
Confidence 3444554 898643 3456899999964333322222222345543 44689999999888732
Q ss_pred chhhhHHhhh-hhhcchhHHHHHHHhhCCCCCCccCCCCCcccceecCCCCcccc--cCccc---c--ccCCcccCCCCC
Q 002579 101 ILESVVEEEN-QLVQMTVENVIEETVKGKKAPICKEEPISKVECFPRKEGGSEVS--NGLNK---K--CLKRPSAMKPKV 172 (905)
Q Consensus 101 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~--~~~trs~~k~k~ 172 (905)
..++| +..|=||..++|| |+.-. -|-..+++|.+.+ .++.. . -+|+||+-++||
T Consensus 158 -----~slpNV~~eeGtV~sLlee------------~gvvk-GV~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v 219 (509)
T KOG1298|consen 158 -----ASLPNVRLEEGTVKSLLEE------------EGVVK-GVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDPKV 219 (509)
T ss_pred -----hcCCCeEEeeeeHHHHHhc------------cCeEE-eEEEecCCCceEEEecceEEEecchhHHHHHHhcCCcc
Confidence 12222 1222245444433 33111 1224454454444 34442 2 478899999999
Q ss_pred Cccccccccc--cCCCCC--------------------ccchhhhhhhhcCCCCCCCCcccccccc-ccccCCCCCchhh
Q 002579 173 EPVEVLVTQS--EGFGNE--------------------SMSLIEVEAIAEGSALTSPKKNLELKMS-KKISLNKKPMTVT 229 (905)
Q Consensus 173 e~~~~~~~~~--~~~~~~--------------------~~~~~~~~~~~~~s~~~~~~~~~~~k~~-kk~~~~~~p~~vk 229 (905)
+++.+.-.+. ++-... +++++++--.- .++.-|+-.+.|||.. |+..--.+|.+++
T Consensus 220 ~~V~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~~v-~g~~~Psi~~gem~~~mk~~v~PqiP~~lR 298 (509)
T KOG1298|consen 220 EEVPSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLVDV-PGQKLPSIANGEMATYMKESVAPQIPEKLR 298 (509)
T ss_pred cccchheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEEec-CcccCCcccchhHHHHHHHhhCcCCCHHHH
Confidence 9876543332 111000 01111211111 1334466667777654 4444556889999
Q ss_pred hhhh----cCCCCCceEEEE
Q 002579 230 ELFE----TGLLDGVSVVYM 245 (905)
Q Consensus 230 ~Ll~----tglleg~~V~Y~ 245 (905)
+-+. .|-+--++=+||
T Consensus 299 ~~F~~av~~g~irsmpn~~m 318 (509)
T KOG1298|consen 299 ESFLEAVDEGNIRSMPNSSM 318 (509)
T ss_pred HHHHHHhhccchhcCccccC
Confidence 8865 455555566666
No 152
>PTZ00064 histone acetyltransferase; Provisional
Probab=52.30 E-value=17 Score=43.46 Aligned_cols=80 Identities=18% Similarity=0.081 Sum_probs=46.5
Q ss_pred HHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEeeC----CeEEEEEEEEEeCCeeEEEeeeEe
Q 002579 730 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVN----SSVVSAGILRVFGQEVAELPLVAT 805 (905)
Q Consensus 730 ~kLs~Al~If~EcFdPiid~rSgrDLIp~MVy~~~~~~~~f~Gfy~~VL~~~----~~vVsaA~lri~g~~vAElp~VAT 805 (905)
....+-|-.|-..| +|++|=- .|...|.-+||... -.+||-=+=-..-.+--.|--|-|
T Consensus 330 klYCQNLCLLAKLF---LDhKTLY--------------yDVdpFlFYVLtE~D~~G~HiVGYFSKEK~S~~~nNLACILt 392 (552)
T PTZ00064 330 RGYAENLCYLAKLF---LDHKTLQ--------------YDVEPFLFYIVTEVDEEGCHIVGYFSKEKVSLLHYNLACILT 392 (552)
T ss_pred hhHHHHHHHHHHHh---ccCcccc--------------ccccceEEEEEEEecCCCcEEEEEecccccCcccCceEEEEe
Confidence 44577777787888 3544311 23445555555532 234332211111112235778899
Q ss_pred ecCccCCChhHHHHHHHHHHh
Q 002579 806 SKINHGKGYFQLLFACIEKLL 826 (905)
Q Consensus 806 ~~~yRgqG~gr~L~~~IE~~L 826 (905)
.|.||++|||+.|++.==.+.
T Consensus 393 LPpyQRKGYGklLIdfSYeLS 413 (552)
T PTZ00064 393 LPCYQRKGYGKLLVDLSYKLS 413 (552)
T ss_pred cchhhhcchhhhhhhhhhhhh
Confidence 999999999999998644443
No 153
>PHA02929 N1R/p28-like protein; Provisional
Probab=51.76 E-value=5.3 Score=43.54 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=33.2
Q ss_pred CCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCCCCCCCCCCcccccccccc
Q 002579 513 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMF 572 (905)
Q Consensus 513 ~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~L~~vP~g~W~Cp~C~~~~ 572 (905)
.+..|.+|...+.... .....+..-..|.+.||..|+. .|-...-.||.|+..+
T Consensus 173 ~~~eC~ICle~~~~~~----~~~~~~~vl~~C~H~FC~~CI~--~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 173 KDKECAICMEKVYDKE----IKNMYFGILSNCNHVFCIECID--IWKKEKNTCPVCRTPF 226 (238)
T ss_pred CCCCCccCCcccccCc----cccccceecCCCCCcccHHHHH--HHHhcCCCCCCCCCEe
Confidence 4578999997543110 0000122234788999999994 3434456899999754
No 154
>PLN03239 histone acetyltransferase; Provisional
Probab=51.35 E-value=21 Score=41.01 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=46.0
Q ss_pred HHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEee-C---CeEEEEEEEEEeCCeeEEEeeeEe
Q 002579 730 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV-N---SSVVSAGILRVFGQEVAELPLVAT 805 (905)
Q Consensus 730 ~kLs~Al~If~EcFdPiid~rSgrDLIp~MVy~~~~~~~~f~Gfy~~VL~~-~---~~vVsaA~lri~g~~vAElp~VAT 805 (905)
....+-|-.|-..| +|++|=- .|...|.-+||.. | -.+||-=+=--...+--.|--|-|
T Consensus 159 ~~yCQnLCLlaKLF---LdhKtly--------------yDV~~FlFYVl~e~D~~g~h~vGYFSKEK~s~~~~NLaCIlt 221 (351)
T PLN03239 159 RIYCQNLCYIAKLF---LDHKTLY--------------FDVDPFLFYVLCEVDERGFHPVGYYSKEKYSDVGYNLACILT 221 (351)
T ss_pred hHHHHHHHHHHHHh---hcCccee--------------ccccceEEEEEEEecCCceEEEEEeeecccCCCCCceEEEEe
Confidence 44577777777888 3544311 1334455555553 2 123332110000011235788899
Q ss_pred ecCccCCChhHHHHHHHHHHhhh
Q 002579 806 SKINHGKGYFQLLFACIEKLLSF 828 (905)
Q Consensus 806 ~~~yRgqG~gr~L~~~IE~~L~~ 828 (905)
.|.||++|||+.|++.==.+.+.
T Consensus 222 LPpyQrkGyG~lLI~fSYeLSr~ 244 (351)
T PLN03239 222 FPAHQRKGYGRFLIAFSYELSKK 244 (351)
T ss_pred cChhhhcchhhhhHhhhhHhhhh
Confidence 99999999999999865444433
No 155
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=51.33 E-value=31 Score=32.17 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.4
Q ss_pred CeeEEEeeeEeecCccCCChhHHHH
Q 002579 795 QEVAELPLVATSKINHGKGYFQLLF 819 (905)
Q Consensus 795 ~~vAElp~VAT~~~yRgqG~gr~L~ 819 (905)
..++||-++|++++||+...-..|.
T Consensus 76 ~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 76 RRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CcEEEeehheECHhHCCChHHHHHh
Confidence 3789999999999999998777664
No 156
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=51.24 E-value=16 Score=42.49 Aligned_cols=74 Identities=22% Similarity=0.195 Sum_probs=45.5
Q ss_pred HHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEeeCCeEEEEEEEEEeCC---eeEEEeeeEee
Q 002579 730 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSSVVSAGILRVFGQ---EVAELPLVATS 806 (905)
Q Consensus 730 ~kLs~Al~If~EcFdPiid~rSgrDLIp~MVy~~~~~~~~f~Gfy~~VL~~~~~vVsaA~lri~g~---~vAElp~VAT~ 806 (905)
....+-|=.|-..| +|+.| +| .|...|.-+||...|..= .+-++--.. +--.|--|=|.
T Consensus 208 k~YCQnLCLlaKLF---LdhKT--------LY------yDvdpFlFYVlte~d~~G-~VGYFSKEK~s~~~yNlaCILtL 269 (396)
T KOG2747|consen 208 KLYCQNLCLLAKLF---LDHKT--------LY------YDVDPFLFYVLTECDSYG-CVGYFSKEKESSENYNLACILTL 269 (396)
T ss_pred hHHHHHHHHHHHHH---hcCce--------eE------EeccceEEEEEEecCCcc-eeeeeccccccccccceeeeeec
Confidence 45577777777888 34422 11 244556666667554332 222222222 23337788899
Q ss_pred cCccCCChhHHHHHH
Q 002579 807 KINHGKGYFQLLFAC 821 (905)
Q Consensus 807 ~~yRgqG~gr~L~~~ 821 (905)
|.||++|||+.|++.
T Consensus 270 PpyQRkGYGklLIdF 284 (396)
T KOG2747|consen 270 PPYQRKGYGKLLIDF 284 (396)
T ss_pred Chhhhcccchhhhhh
Confidence 999999999999874
No 157
>PLN02400 cellulose synthase
Probab=50.55 E-value=14 Score=47.95 Aligned_cols=60 Identities=23% Similarity=0.614 Sum_probs=46.8
Q ss_pred cCCCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCCCCCCCCCCcccccccccccccc
Q 002579 511 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERKR 576 (905)
Q Consensus 511 ~~~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~L~~vP~g~W~Cp~C~~~~~kek 576 (905)
.-++.+|.+|+..+-. .++|+-.+-|..|.-...-.|+.. +..+|.=.||.|+.++.+-+
T Consensus 33 ~~~gqiCqICGD~VG~-----t~dGe~FVAC~eCaFPVCRpCYEY-ERkeGnq~CPQCkTrYkR~K 92 (1085)
T PLN02400 33 NLNGQICQICGDDVGV-----TETGDVFVACNECAFPVCRPCYEY-ERKDGTQCCPQCKTRYRRHK 92 (1085)
T ss_pred ccCCceeeecccccCc-----CCCCCEEEEEccCCCccccchhhe-ecccCCccCcccCCcccccc
Confidence 3567899999986543 347778899999988788888854 56788999999998876433
No 158
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=50.40 E-value=3.6 Score=37.55 Aligned_cols=58 Identities=24% Similarity=0.629 Sum_probs=25.9
Q ss_pred cCCCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCCCCCCCCCCcccccccccccc
Q 002579 511 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFER 574 (905)
Q Consensus 511 ~~~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~L~~vP~g~W~Cp~C~~~~~k 574 (905)
.-++.+|.+|+..+-. .++|+-.+.|..|.-.....|+.. +..+|.-.||.|+..+.+
T Consensus 6 ~~~~qiCqiCGD~VGl-----~~~Ge~FVAC~eC~fPvCr~CyEY-Erkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 6 NLNGQICQICGDDVGL-----TENGEVFVACHECAFPVCRPCYEY-ERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp --SS-B-SSS--B--B------SSSSB--S-SSS-----HHHHHH-HHHTS-SB-TTT--B---
T ss_pred hcCCcccccccCcccc-----CCCCCEEEEEcccCCccchhHHHH-HhhcCcccccccCCCccc
Confidence 3567899999976543 347778899999976666677753 456778899999976643
No 159
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.03 E-value=4 Score=45.00 Aligned_cols=55 Identities=22% Similarity=0.441 Sum_probs=34.0
Q ss_pred CCccccccCcCCCcCcccccCCCCce---EeccCCCcccccccCCCCCCCCCCcccccccccc
Q 002579 513 LGIICHCCNSEVSPSQFEAHADGGNL---LPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMF 572 (905)
Q Consensus 513 ~gi~C~~C~~~~SpS~FE~HAdgG~L---L~CDgC~~afH~~CL~L~~vP~g~W~Cp~C~~~~ 572 (905)
++-+|.+|++.+..+. |.+-+ +.=-.|.+.||.+|+.--.+--..-.||.|+.++
T Consensus 223 ~d~vCaVCg~~~~~s~-----~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSV-----DEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKV 280 (328)
T ss_pred CcchhHhhcchheeec-----chhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHh
Confidence 4568999998665432 22211 1122589999999994112222356899998643
No 160
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=46.85 E-value=13 Score=48.00 Aligned_cols=58 Identities=26% Similarity=0.688 Sum_probs=46.1
Q ss_pred cCCCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCCCCCCCCCCcccccccccccc
Q 002579 511 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFER 574 (905)
Q Consensus 511 ~~~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~L~~vP~g~W~Cp~C~~~~~k 574 (905)
.-++.+|.+|+..+-. .++|+-.+-|..|.-.....|+.- +..+|.=.||.|+.++.+
T Consensus 14 ~~~~qiCqICGD~vg~-----~~~Ge~FVAC~eC~FPVCrpCYEY-Er~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 14 HGGGQVCQICGDNVGK-----TVDGEPFVACDVCAFPVCRPCYEY-ERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred ccCCceeeecccccCc-----CCCCCEEEEeccCCCccccchhhh-hhhcCCccCCccCCchhh
Confidence 3467899999986543 347778899999988888889854 567889999999988764
No 161
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=46.15 E-value=22 Score=42.21 Aligned_cols=76 Identities=18% Similarity=0.160 Sum_probs=44.3
Q ss_pred HHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEee----CCeEEEEEEEEEeCCeeEEEeeeEe
Q 002579 730 LLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV----NSSVVSAGILRVFGQEVAELPLVAT 805 (905)
Q Consensus 730 ~kLs~Al~If~EcFdPiid~rSgrDLIp~MVy~~~~~~~~f~Gfy~~VL~~----~~~vVsaA~lri~g~~vAElp~VAT 805 (905)
....+-|-.|-..| +|++|= | .|...|.-+||.. +-.+||-=+=--.-.+--.|--|-|
T Consensus 252 ~~yCqnLcLlaKLF---LdhKtl--------y------ydV~~FlFYvl~e~d~~g~h~vGyFSKEk~s~~~~NLaCIlt 314 (450)
T PLN00104 252 KVYCQNLCYLAKLF---LDHKTL--------Y------YDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEEDYNLACILT 314 (450)
T ss_pred hhHHHHHHHHHHHh---hcCcce--------e------ccccceEEEEEEEecCCCcEEEEEecccccCcCCCceEEEEe
Confidence 44577777777888 354331 1 2334455555543 2244442221111112235788899
Q ss_pred ecCccCCChhHHHHHHH
Q 002579 806 SKINHGKGYFQLLFACI 822 (905)
Q Consensus 806 ~~~yRgqG~gr~L~~~I 822 (905)
.|.||++|||+.|++.=
T Consensus 315 lP~yQrkGyG~~LI~~S 331 (450)
T PLN00104 315 LPPYQRKGYGKFLIAFS 331 (450)
T ss_pred cchhhhcchhheehhhe
Confidence 99999999999998753
No 162
>PLN02436 cellulose synthase A
Probab=46.09 E-value=15 Score=47.37 Aligned_cols=59 Identities=22% Similarity=0.595 Sum_probs=46.1
Q ss_pred cCCCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCCCCCCCCCCccccccccccccc
Q 002579 511 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERK 575 (905)
Q Consensus 511 ~~~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~L~~vP~g~W~Cp~C~~~~~ke 575 (905)
.-++.+|.+|+..+-. .+||+-.+-|..|.-.....|+.- +..+|.-.||.|+..+.+-
T Consensus 33 ~~~~~iCqICGD~Vg~-----t~dGe~FVACn~C~fpvCr~Cyey-er~eg~~~Cpqckt~Y~r~ 91 (1094)
T PLN02436 33 ELSGQTCQICGDEIEL-----TVDGEPFVACNECAFPVCRPCYEY-ERREGNQACPQCKTRYKRI 91 (1094)
T ss_pred ccCCccccccccccCc-----CCCCCEEEeeccCCCccccchhhh-hhhcCCccCcccCCchhhc
Confidence 3467799999987643 337778899999988888889853 5677899999999877543
No 163
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=43.11 E-value=20 Score=38.06 Aligned_cols=35 Identities=29% Similarity=0.673 Sum_probs=27.5
Q ss_pred ceeeccCCCCCCCCCCCCceeecCCCCCcCCcCCCC
Q 002579 616 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLK 651 (905)
Q Consensus 616 ~C~vC~~~df~~sg~~~~~LI~CDqC~rayHv~CL~ 651 (905)
.|.+|...+. .=+|.......|..|...||..|..
T Consensus 154 iCe~C~~~~~-IfPF~~~~~~~C~~C~~v~H~~C~~ 188 (202)
T PF13901_consen 154 ICEICNSDDI-IFPFQIDTTVRCPKCKSVFHKSCFR 188 (202)
T ss_pred CCccCCCCCC-CCCCCCCCeeeCCcCccccchhhcC
Confidence 3888876532 3346677899999999999999996
No 164
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=42.80 E-value=36 Score=39.14 Aligned_cols=76 Identities=22% Similarity=0.189 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHhhhhcC-CCcccCCCCCCccccccccccCCCceecceEEEEEee--CCeEEEEEEEEEe-C-------
Q 002579 726 PETRLLLSQAVAIFHDCF-DPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTV--NSSVVSAGILRVF-G------- 794 (905)
Q Consensus 726 ~e~~~kLs~Al~If~EcF-dPiid~rSgrDLIp~MVy~~~~~~~~f~Gfy~~VL~~--~~~vVsaA~lri~-g------- 794 (905)
+.+...|..-++--.+.| ...++. --.-.|.+||+. .|+|||++.|..- |
T Consensus 30 P~d~~~L~~rI~~S~~sFa~~~~~~-------------------~~~~~YlfVLED~~tg~vvGts~I~a~vG~~~PfY~ 90 (342)
T PF04958_consen 30 PPDREALAERIERSERSFAGRDVDF-------------------PGDEGYLFVLEDTETGEVVGTSAIEAAVGLDEPFYS 90 (342)
T ss_dssp -S-HHHHHHHHHHHHHHHH-TT-----------------------S--EEEEEEEETTT--EEEEEEEESSTTSSS---E
T ss_pred CCCHHHHHHHHHHHHHHhhccccCC-------------------CCccceEEEEEecCCCcEEEEEeEEeccCCCCCcEE
Confidence 555666666666666677 233221 012269999995 5899999854321 0
Q ss_pred ----------------------------CeeEEEeeeEeecCccCCChhHHHHH
Q 002579 795 ----------------------------QEVAELPLVATSKINHGKGYFQLLFA 820 (905)
Q Consensus 795 ----------------------------~~vAElp~VAT~~~yRgqG~gr~L~~ 820 (905)
++-.||--+-.+++||+-|.|+.|-.
T Consensus 91 yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr 144 (342)
T PF04958_consen 91 YRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSR 144 (342)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHH
T ss_pred EEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHH
Confidence 46788888899999999999987754
No 165
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=41.97 E-value=8.6 Score=29.03 Aligned_cols=31 Identities=19% Similarity=0.479 Sum_probs=20.8
Q ss_pred eEeccCCCcccccccCC-CCCCCCCCcccccccc
Q 002579 538 LLPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQN 570 (905)
Q Consensus 538 LL~CDgC~~afH~~CL~-L~~vP~g~W~Cp~C~~ 570 (905)
.+.-..|.+.||..|+. +.. .+...||.|+.
T Consensus 12 ~~~~~~C~H~~c~~C~~~~~~--~~~~~Cp~C~~ 43 (45)
T cd00162 12 PVVLLPCGHVFCRSCIDKWLK--SGKNTCPLCRT 43 (45)
T ss_pred ceEecCCCChhcHHHHHHHHH--hCcCCCCCCCC
Confidence 34445588999999995 111 14678999974
No 166
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=41.19 E-value=76 Score=33.36 Aligned_cols=64 Identities=20% Similarity=0.318 Sum_probs=51.1
Q ss_pred CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCcEE--cCHHHHHHH
Q 002579 795 QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKK--IDPELLSIY 863 (905)
Q Consensus 795 ~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF~~--i~~~~~~~~ 863 (905)
..++||.=+|.. +.|..+.|+..|-..|...|.+.++.-|......+..+ +|+.. +.+.+-.++
T Consensus 85 ~~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g~~w~vfTaT~~lr~~~~r-lgl~~~~La~Ad~~rl 150 (179)
T PF12261_consen 85 SQIVEVGNLASF----SPGAARLLFAALAQLLAQQGFEWVVFTATRQLRNLFRR-LGLPPTVLADADPSRL 150 (179)
T ss_pred hheeEeechhhc----CcccHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHH-cCCCceeccccCHhHc
Confidence 357777777765 58999999999999999999999999999999999997 77654 444443333
No 167
>PRK14852 hypothetical protein; Provisional
Probab=40.95 E-value=80 Score=41.13 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=53.3
Q ss_pred CeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEEecchhhHHHHHHhccCcEEcCHH
Q 002579 795 QEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAAEEAESIWTDKFGFKKIDPE 858 (905)
Q Consensus 795 ~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~~~a~~~wt~kfGF~~i~~~ 858 (905)
..++|+-.+|+++..|.+=+--.|+..+=..+...++..+++---+.=..||++-|||+.+++.
T Consensus 119 r~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~VnPkH~~FY~r~l~f~~ig~~ 182 (989)
T PRK14852 119 RNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVNPKHVKFYTDIFLFKPFGEV 182 (989)
T ss_pred CeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEECcchHHHHHHHhCCcccccc
Confidence 4799999999988777766555666666555667799999999999999999999999999873
No 168
>PLN02189 cellulose synthase
Probab=40.53 E-value=21 Score=46.16 Aligned_cols=57 Identities=23% Similarity=0.614 Sum_probs=45.1
Q ss_pred CCCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCCCCCCCCCCcccccccccccc
Q 002579 512 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFER 574 (905)
Q Consensus 512 ~~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~L~~vP~g~W~Cp~C~~~~~k 574 (905)
-++.+|.+|+..+... ++|.-.+-|..|.-.....|+.- +..+|.-.||.|+..+.+
T Consensus 32 ~~~~~C~iCgd~vg~~-----~~g~~fvaC~~C~fpvCr~Cyey-er~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 32 LDGQVCEICGDEIGLT-----VDGDLFVACNECGFPVCRPCYEY-ERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred ccCccccccccccCcC-----CCCCEEEeeccCCCccccchhhh-hhhcCCccCcccCCchhh
Confidence 4667999999876543 36777899999988888888853 567889999999987654
No 169
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=39.70 E-value=21 Score=45.86 Aligned_cols=48 Identities=31% Similarity=0.877 Sum_probs=38.5
Q ss_pred ceeeccCCCCCCCCCCCCceeecCCCCCcCCcCCCCcCcCCcccCCCCCCceecCCccch
Q 002579 616 GCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRI 675 (905)
Q Consensus 616 ~C~vC~~~df~~sg~~~~~LI~CDqC~rayHv~CL~p~~~~~L~evP~g~WfCp~~C~~I 675 (905)
.|..|.+.. ....+ +|+.|...||..|..+ +++.+|.+.|.| ..|...
T Consensus 157 ~~~~~~k~~------~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~ 204 (904)
T KOG1246|consen 157 QCNTCSKGK------EEKLL-LCDSCDDSYHTYCLRP----PLTRVPDGDWRC-PKCIPT 204 (904)
T ss_pred hhhccccCC------Cccce-ecccccCcccccccCC----CCCcCCcCcccC-Cccccc
Confidence 488887653 23344 9999999999999987 788899999998 777665
No 170
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=39.11 E-value=16 Score=34.39 Aligned_cols=31 Identities=35% Similarity=0.952 Sum_probs=26.3
Q ss_pred CCccccccCcCCCcCcccccCCCCceEeccC--CCcccccccCC
Q 002579 513 LGIICHCCNSEVSPSQFEAHADGGNLLPCDG--CPRAFHKECAS 554 (905)
Q Consensus 513 ~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDg--C~~afH~~CL~ 554 (905)
....|.+|++ ..|-.+.|.. |...||..|..
T Consensus 54 ~~~~C~iC~~-----------~~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 54 FKLKCSICGK-----------SGGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred cCCcCcCCCC-----------CCceeEEcCCCCCCcCCCHHHHH
Confidence 4578999996 4688999986 99999999983
No 171
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=38.78 E-value=28 Score=36.92 Aligned_cols=46 Identities=35% Similarity=0.795 Sum_probs=34.3
Q ss_pred CCCccccccCcC--CCcCcccccCCCCceEeccCCCcccccccCCCCCCCCCCcccccccc
Q 002579 512 GLGIICHCCNSE--VSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQN 570 (905)
Q Consensus 512 ~~gi~C~~C~~~--~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~L~~vP~g~W~Cp~C~~ 570 (905)
..|.+|.+|+.. +-| | +.+....|..|...||..|..- -.||.|..
T Consensus 150 ~kGfiCe~C~~~~~IfP--F----~~~~~~~C~~C~~v~H~~C~~~-------~~CpkC~R 197 (202)
T PF13901_consen 150 QKGFICEICNSDDIIFP--F----QIDTTVRCPKCKSVFHKSCFRK-------KSCPKCAR 197 (202)
T ss_pred hCCCCCccCCCCCCCCC--C----CCCCeeeCCcCccccchhhcCC-------CCCCCcHh
Confidence 457899999853 333 3 3457899999999999999951 23999963
No 172
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=38.66 E-value=9.5 Score=35.12 Aligned_cols=56 Identities=18% Similarity=0.368 Sum_probs=32.6
Q ss_pred ccccccCcCCCc----CcccccCCCCceEeccCCCcccccccCCCCCCCCCCcccccccccc
Q 002579 515 IICHCCNSEVSP----SQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMF 572 (905)
Q Consensus 515 i~C~~C~~~~Sp----S~FE~HAdgG~LL~CDgC~~afH~~CL~L~~vP~g~W~Cp~C~~~~ 572 (905)
+.|.+|+..+.. -+|...++++=-+.=..|.++||..|+. .|-+..-.||.+++.+
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~--rWL~Tk~~CPld~q~w 80 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIY--RWLDTKGVCPLDRQTW 80 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHH--HHHhhCCCCCCCCcee
Confidence 678888754321 1122211222122224699999999994 3333477899998764
No 173
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=38.39 E-value=14 Score=32.72 Aligned_cols=35 Identities=26% Similarity=0.682 Sum_probs=13.5
Q ss_pred ceeeccCCCCCCCCCCCCceeecC--CCCCcCCcCCCCcC
Q 002579 616 GCLLCRGCDFSKSGFGPRTILLCD--QCEREFHVGCLKKH 653 (905)
Q Consensus 616 ~C~vC~~~df~~sg~~~~~LI~CD--qC~rayHv~CL~p~ 653 (905)
.|.||...-. ..+....+.|+ .|...||..||...
T Consensus 4 ~C~IC~~~~~---~~~~~p~~~C~n~~C~~~fH~~CL~~w 40 (70)
T PF11793_consen 4 ECGICYSYRL---DDGEIPDVVCPNPSCGKKFHLLCLSEW 40 (70)
T ss_dssp S-SSS--SS----TT-----B--S-TT----B-SGGGHHH
T ss_pred CCCcCCcEec---CCCCcCceEcCCcccCCHHHHHHHHHH
Confidence 3889976421 11334568998 99999999999653
No 174
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=38.23 E-value=54 Score=37.70 Aligned_cols=49 Identities=18% Similarity=0.119 Sum_probs=37.5
Q ss_pred ceEEEEEee--CCeEEEEEEEEEe-C-----------------------------------CeeEEEeeeEeecCccCCC
Q 002579 772 GMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKG 813 (905)
Q Consensus 772 Gfy~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~vAElp~VAT~~~yRgqG 813 (905)
.-|.+||+. .|+|||++.|..- | ++..||--+-.+++||+-|
T Consensus 54 ~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~ 133 (336)
T TIGR03244 54 QGYLFVLEDTETGTVAGVSAIEAAVGLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGG 133 (336)
T ss_pred ccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCc
Confidence 468889985 5899998855321 1 4678888888999999999
Q ss_pred hhHHHHH
Q 002579 814 YFQLLFA 820 (905)
Q Consensus 814 ~gr~L~~ 820 (905)
.|+.|-.
T Consensus 134 ~G~LLSr 140 (336)
T TIGR03244 134 NGRLLSK 140 (336)
T ss_pred chhhHHH
Confidence 9977643
No 175
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=37.78 E-value=27 Score=43.46 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=24.6
Q ss_pred EEEeeeEeecCccCCChhHHHHHHHHHHh
Q 002579 798 AELPLVATSKINHGKGYFQLLFACIEKLL 826 (905)
Q Consensus 798 AElp~VAT~~~yRgqG~gr~L~~~IE~~L 826 (905)
|+|-+|||+|+|++-|||.+-++-+.+..
T Consensus 615 aRIVRIAvhP~y~~MGYGsrAvqLL~~y~ 643 (1011)
T KOG2036|consen 615 ARIVRIAVHPEYQKMGYGSRAVQLLTDYF 643 (1011)
T ss_pred ceEEEEEeccchhccCccHHHHHHHHHHH
Confidence 66788999999999999988887777654
No 176
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=37.64 E-value=52 Score=37.79 Aligned_cols=49 Identities=12% Similarity=0.021 Sum_probs=37.6
Q ss_pred ceEEEEEee--CCeEEEEEEEEEe-C-----------------------------------CeeEEEeeeEeecCccCCC
Q 002579 772 GMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKG 813 (905)
Q Consensus 772 Gfy~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~vAElp~VAT~~~yRgqG 813 (905)
-.|.+||+. .|+|||++.|... | ++..||--+-.+++||+-|
T Consensus 55 ~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~ 134 (336)
T TIGR03245 55 ERYLFVLEDTETGKLLGTSSIVASAGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTE 134 (336)
T ss_pred ccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCC
Confidence 478889995 6899998865321 1 4678888888999999999
Q ss_pred hhHHHHH
Q 002579 814 YFQLLFA 820 (905)
Q Consensus 814 ~gr~L~~ 820 (905)
.|+.|-.
T Consensus 135 ~G~lLSr 141 (336)
T TIGR03245 135 AAELLSR 141 (336)
T ss_pred chhHHHH
Confidence 9877643
No 177
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=37.46 E-value=54 Score=37.69 Aligned_cols=49 Identities=18% Similarity=0.120 Sum_probs=37.7
Q ss_pred ceEEEEEee--CCeEEEEEEEEEe-C-----------------------------------CeeEEEeeeEeecCccCCC
Q 002579 772 GMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGKG 813 (905)
Q Consensus 772 Gfy~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~vAElp~VAT~~~yRgqG 813 (905)
-.|.+||+. .|+|||++.|..- | ++..||--+-.+++||+-|
T Consensus 54 ~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~ 133 (335)
T TIGR03243 54 EGYLFVLEDTETGTVAGVSAIEAAVGLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGG 133 (335)
T ss_pred ccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCC
Confidence 478999995 5899998865321 1 4678888888999999999
Q ss_pred hhHHHHH
Q 002579 814 YFQLLFA 820 (905)
Q Consensus 814 ~gr~L~~ 820 (905)
.|+.|-.
T Consensus 134 ~G~LLSr 140 (335)
T TIGR03243 134 NGRLLSR 140 (335)
T ss_pred chhhHHH
Confidence 9977643
No 178
>PRK10456 arginine succinyltransferase; Provisional
Probab=36.82 E-value=52 Score=37.90 Aligned_cols=50 Identities=20% Similarity=0.102 Sum_probs=37.8
Q ss_pred cceEEEEEee--CCeEEEEEEEEEe-C-----------------------------------CeeEEEeeeEeecCccCC
Q 002579 771 GGMYCAILTV--NSSVVSAGILRVF-G-----------------------------------QEVAELPLVATSKINHGK 812 (905)
Q Consensus 771 ~Gfy~~VL~~--~~~vVsaA~lri~-g-----------------------------------~~vAElp~VAT~~~yRgq 812 (905)
...|.+||+. .|+|||++.|..- | ++..||--+-.+++||+-
T Consensus 55 ~~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~ 134 (344)
T PRK10456 55 EQGYVFVLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKE 134 (344)
T ss_pred CccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCC
Confidence 3478889985 5899998865321 1 467788888899999999
Q ss_pred ChhHHHHH
Q 002579 813 GYFQLLFA 820 (905)
Q Consensus 813 G~gr~L~~ 820 (905)
|.|+.|-.
T Consensus 135 ~~G~LLSr 142 (344)
T PRK10456 135 GNGYLLSK 142 (344)
T ss_pred CchhHHHH
Confidence 99877643
No 179
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=36.39 E-value=13 Score=31.31 Aligned_cols=35 Identities=26% Similarity=0.654 Sum_probs=28.2
Q ss_pred CCccccccCcCCCcCcccccCCCCceEeccCCCcc
Q 002579 513 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRA 547 (905)
Q Consensus 513 ~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~a 547 (905)
++..|+-|+..++|..+..-..+++++.|+.|++.
T Consensus 21 ~~~~C~gC~~~l~~~~~~~i~~~~~i~~Cp~CgRi 55 (56)
T PF02591_consen 21 EGGTCSGCHMELPPQELNEIRKGDEIVFCPNCGRI 55 (56)
T ss_pred eCCccCCCCEEcCHHHHHHHHcCCCeEECcCCCcc
Confidence 34589999999998877666566899999999863
No 180
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=34.55 E-value=6.8 Score=51.26 Aligned_cols=31 Identities=32% Similarity=0.729 Sum_probs=22.5
Q ss_pred CCCcccccccCC--C------CCCCCCCccccccccccc
Q 002579 543 GCPRAFHKECAS--L------SSIPQGDWYCKYCQNMFE 573 (905)
Q Consensus 543 gC~~afH~~CL~--L------~~vP~g~W~Cp~C~~~~~ 573 (905)
+|.+.||+.|.. | +.+-.+--.||.|++.+.
T Consensus 3506 ~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3506 DCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred CCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 599999999984 2 233345578999998653
No 181
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=34.18 E-value=29 Score=44.90 Aligned_cols=56 Identities=25% Similarity=0.603 Sum_probs=44.4
Q ss_pred CCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCCCCCCCCCCcccccccccccc
Q 002579 513 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFER 574 (905)
Q Consensus 513 ~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~L~~vP~g~W~Cp~C~~~~~k 574 (905)
.+.+|.+|+..+-. .++|+-.+-|..|.-.....|+.. +..+|.=.||.|+..+.+
T Consensus 14 ~~~~c~iCGd~vg~-----~~~Ge~FVAC~eC~fpvCr~cyey-e~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGV-----KEDGQPFVACHVCGFPVCKPCYEY-ERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCc-----CCCCCEEEEeccCCCccccchhhh-hhhcCCccCCccCCchhh
Confidence 56899999986543 347777899999988888888854 567888999999987653
No 182
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=34.14 E-value=23 Score=40.74 Aligned_cols=44 Identities=20% Similarity=0.480 Sum_probs=34.8
Q ss_pred ceeecCCCCCcCCcCC--CCcCcCCcccCCCCCCceecCCccchhHHHHH
Q 002579 634 TILLCDQCEREFHVGC--LKKHKMADLRELPKGKWFCCMDCSRINSVLQN 681 (905)
Q Consensus 634 ~LI~CDqC~rayHv~C--L~p~~~~~L~evP~g~WfCp~~C~~I~~~Lq~ 681 (905)
-++.||.|..|||..| ++. +-.+..+...|+| ..|......++.
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~---~~~e~p~~~~~~c-~~c~~~~~~~~~ 119 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGT---AEKEAPKEDPKVC-DECKEAQDGMSE 119 (345)
T ss_pred hhhccccccccccccccccCc---hhhcCCccccccc-cccchhhhhhhh
Confidence 6789999999999999 754 3444555678999 999988776654
No 183
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=33.26 E-value=12 Score=35.81 Aligned_cols=52 Identities=27% Similarity=0.652 Sum_probs=33.7
Q ss_pred ceeeccCCCCCCCCCCCCceeec------CCC---CCcCCcCCCCcCcCCcc-cCCCCCCceecCCccch
Q 002579 616 GCLLCRGCDFSKSGFGPRTILLC------DQC---EREFHVGCLKKHKMADL-RELPKGKWFCCMDCSRI 675 (905)
Q Consensus 616 ~C~vC~~~df~~sg~~~~~LI~C------DqC---~rayHv~CL~p~~~~~L-~evP~g~WfCp~~C~~I 675 (905)
.|+.|++.. .+..+.| ..| ...|=-.||...--.++ +.+...+|.| +.|..|
T Consensus 9 ~CHqCrqKt-------~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~C-P~Crgi 70 (105)
T PF10497_consen 9 TCHQCRQKT-------LDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKC-PKCRGI 70 (105)
T ss_pred CchhhcCCC-------CCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceEC-CCCCCe
Confidence 488898753 2334556 566 88899999876522222 3345678999 678665
No 184
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=33.08 E-value=2.1e+02 Score=31.46 Aligned_cols=56 Identities=7% Similarity=0.037 Sum_probs=46.2
Q ss_pred eeCCeEEEEEEEEEeCCeeEEEeeeEeecCccCCChhHHHHHHHHHHhhhcCccEEE
Q 002579 779 TVNSSVVSAGILRVFGQEVAELPLVATSKINHGKGYFQLLFACIEKLLSFLRVKSIV 835 (905)
Q Consensus 779 ~~~~~vVsaA~lri~g~~vAElp~VAT~~~yRgqG~gr~L~~~IE~~L~~lgV~~Lv 835 (905)
..+|++|++|.+-+..+.+.-|-.+ =+|+|-..++|...+..-.+.++.+|.+.+-
T Consensus 150 ~~~g~LiaVav~D~l~d~lSAVY~F-yDPd~~~~SLG~~~iL~qI~~ak~~gl~y~Y 205 (240)
T PRK01305 150 RGDGKLVAVAVTDVLDDGLSAVYTF-YDPDEEHRSLGTFAILWQIELAKRLGLPYVY 205 (240)
T ss_pred EeCCeEEEEEEEeccCCceeeEEEe-eCCCccccCCHHHHHHHHHHHHHHcCCCeEe
Confidence 4789999999998888776655333 4888888888888888888889999999998
No 185
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=33.07 E-value=23 Score=40.55 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhhhcCCCcccCCCCCCccccccccccCCCceecceEEEEEeeCCe----EEEEEEEEEeCCeeEEEeeeE
Q 002579 729 RLLLSQAVAIFHDCFDPIVDSISGRDLIPSMVYGRNLRGQEFGGMYCAILTVNSS----VVSAGILRVFGQEVAELPLVA 804 (905)
Q Consensus 729 ~~kLs~Al~If~EcFdPiid~rSgrDLIp~MVy~~~~~~~~f~Gfy~~VL~~~~~----vVsaA~lri~g~~vAElp~VA 804 (905)
+..+.+-+-.+..+| +|+. |+| +|..+|--+||...|. +||-=+=--...+--.|--|-
T Consensus 207 q~~~CrnLCLlsKlF---Ld~K--------tLY------yDVDpflFYvl~~~~~~~~h~vGyFSKEK~S~~~yNLaCIL 269 (395)
T COG5027 207 QRLYCRNLCLLSKLF---LDHK--------TLY------YDVDPFLFYVLTERGDTGCHLVGYFSKEKESEQDYNLACIL 269 (395)
T ss_pred hhhHHHHHHHHHHHH---hcCc--------eeE------EeccceEEEEEEEcCCcceeeeeeechhhcccccCceEEEE
Confidence 345567777777888 2332 222 3556666666665543 233211111112335577889
Q ss_pred eecCccCCChhHHHHH
Q 002579 805 TSKINHGKGYFQLLFA 820 (905)
Q Consensus 805 T~~~yRgqG~gr~L~~ 820 (905)
|.|.||++|||..|++
T Consensus 270 tLP~yQRrGYG~lLId 285 (395)
T COG5027 270 TLPPYQRRGYGKLLID 285 (395)
T ss_pred ecChhHhcccceEeee
Confidence 9999999999999876
No 186
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=32.69 E-value=17 Score=42.80 Aligned_cols=47 Identities=21% Similarity=0.324 Sum_probs=32.5
Q ss_pred CCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCCCCCCCCCCccccccccc
Q 002579 513 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNM 571 (905)
Q Consensus 513 ~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~L~~vP~g~W~Cp~C~~~ 571 (905)
+-.-|.+|..-+.+| -..+.-.-|.++||-.|+. .|. +-.||.|+..
T Consensus 174 ELPTCpVCLERMD~s--------~~gi~t~~c~Hsfh~~cl~--~w~--~~scpvcR~~ 220 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSS--------TTGILTILCNHSFHCSCLM--KWW--DSSCPVCRYC 220 (493)
T ss_pred cCCCcchhHhhcCcc--------ccceeeeecccccchHHHh--hcc--cCcChhhhhh
Confidence 346799999766543 2345555678999999993 443 5678888853
No 187
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=31.49 E-value=33 Score=44.08 Aligned_cols=49 Identities=33% Similarity=0.815 Sum_probs=38.4
Q ss_pred CCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCC--CCCCCCCCccccccccc
Q 002579 513 LGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS--LSSIPQGDWYCKYCQNM 571 (905)
Q Consensus 513 ~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~--L~~vP~g~W~Cp~C~~~ 571 (905)
+...|..|.+... . .++.|++|...||..|.. ++.+++++|.|+.|...
T Consensus 154 ~~~~~~~~~k~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 154 DYPQCNTCSKGKE---------E-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred cchhhhccccCCC---------c-cceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 3456888886432 1 344999999999999996 77899999999999754
No 188
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.08 E-value=26 Score=40.34 Aligned_cols=46 Identities=28% Similarity=0.663 Sum_probs=30.3
Q ss_pred CceeeccCCCCCCCCCCCCceeecCCCCCcCCcCCCCcCcCCcccCCCCCCceecCCccc
Q 002579 615 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSR 674 (905)
Q Consensus 615 ~~C~vC~~~df~~sg~~~~~LI~CDqC~rayHv~CL~p~~~~~L~evP~g~WfCp~~C~~ 674 (905)
..|.+|-+. +..+..+.==-|...||..|.++. |. ...=+| +-|+.
T Consensus 230 ~~CaIClEd------Y~~GdklRiLPC~H~FH~~CIDpW----L~---~~r~~C-PvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLED------YEKGDKLRILPCSHKFHVNCIDPW----LT---QTRTFC-PVCKR 275 (348)
T ss_pred ceEEEeecc------cccCCeeeEecCCCchhhccchhh----Hh---hcCccC-CCCCC
Confidence 379999874 233444433578899999999874 21 112378 78875
No 189
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=30.92 E-value=36 Score=31.28 Aligned_cols=33 Identities=21% Similarity=0.500 Sum_probs=22.2
Q ss_pred CCCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCC
Q 002579 512 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS 554 (905)
Q Consensus 512 ~~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~ 554 (905)
.++..|.+|++.+..+.| .++ -|+..||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~~~f--------~~~--p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVF--------VVF--PCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceE--------EEe--CCCeEEeccccc
Confidence 456779999998753322 222 345889999973
No 190
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.16 E-value=51 Score=40.29 Aligned_cols=30 Identities=27% Similarity=0.486 Sum_probs=21.2
Q ss_pred CceeeccCCCCCCCCCCCCceeecCCCCCcCCcCCCCc
Q 002579 615 SGCLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKK 652 (905)
Q Consensus 615 ~~C~vC~~~df~~sg~~~~~LI~CDqC~rayHv~CL~p 652 (905)
+.|..|+..+ ..==+||.|++.|+..+|..
T Consensus 143 g~cp~cg~~~--------arGD~Ce~Cg~~~~P~~l~~ 172 (558)
T COG0143 143 GTCPKCGGED--------ARGDQCENCGRTLDPTELIN 172 (558)
T ss_pred ccCCCcCccc--------cCcchhhhccCcCCchhcCC
Confidence 4588888432 11137999999999999743
No 191
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.85 E-value=2.6e+02 Score=30.31 Aligned_cols=81 Identities=22% Similarity=0.151 Sum_probs=59.5
Q ss_pred cceEEEEEeeCCeEEEEEEEEEeC---------------------CeeEEEeeeEeec--CccCCCh----hHHHHHHHH
Q 002579 771 GGMYCAILTVNSSVVSAGILRVFG---------------------QEVAELPLVATSK--INHGKGY----FQLLFACIE 823 (905)
Q Consensus 771 ~Gfy~~VL~~~~~vVsaA~lri~g---------------------~~vAElp~VAT~~--~yRgqG~----gr~L~~~IE 823 (905)
.-.|.+.+..+|+|+|++++-... .+++|.-++|++. .-+++|= ...||..+-
T Consensus 51 ~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~i 130 (209)
T COG3916 51 DTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMI 130 (209)
T ss_pred CceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHH
Confidence 347888888999999999874321 4899999999997 5555553 567999999
Q ss_pred HHhhhcCccEEEecchhhHHHHHHhccCc
Q 002579 824 KLLSFLRVKSIVLPAAEEAESIWTDKFGF 852 (905)
Q Consensus 824 ~~L~~lgV~~LvLpA~~~a~~~wt~kfGF 852 (905)
+.+...|+.+|+.=-..-.+.+..+ .||
T Consensus 131 e~a~~~G~~~IvtVt~~~meril~r-~Gw 158 (209)
T COG3916 131 EYALARGITGIVTVTDTGMERILRR-AGW 158 (209)
T ss_pred HHHHHcCCceEEEEEchHHHHHHHH-cCC
Confidence 9999999999984444444444443 444
No 192
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=29.31 E-value=37 Score=30.17 Aligned_cols=29 Identities=34% Similarity=0.680 Sum_probs=23.7
Q ss_pred ccceeEEeEEeeEEEEEEeccCCCCCCccc
Q 002579 40 RCKRFKVTKVNGFIVYSRVKRSRFSNSDDL 69 (905)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (905)
+=-.|.|+ |||-+||||++..+|-..+.|
T Consensus 39 ~~G~Fev~-~~g~~v~sk~~~~~fp~~~~~ 67 (72)
T TIGR02174 39 TTGAFEVT-VNGQLVWSKLRGGGFPEPEEL 67 (72)
T ss_pred CCcEEEEE-ECCEEEEEeccCCCCCCHHHH
Confidence 44579997 799999999999988876654
No 193
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=28.98 E-value=8.6 Score=35.12 Aligned_cols=59 Identities=20% Similarity=0.404 Sum_probs=34.6
Q ss_pred CccccccCcCCCcCc--ccccCCCCceEeccCCCcccccccCC-CCCCCCCCccccccccccc
Q 002579 514 GIICHCCNSEVSPSQ--FEAHADGGNLLPCDGCPRAFHKECAS-LSSIPQGDWYCKYCQNMFE 573 (905)
Q Consensus 514 gi~C~~C~~~~SpS~--FE~HAdgG~LL~CDgC~~afH~~CL~-L~~vP~g~W~Cp~C~~~~~ 573 (905)
+..|++|+..+..+- ...-.|.=.|+.- .|.++||..|+. .-..|...-.||.|++.++
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWG-YCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHH-HHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 348999987543110 0000011122222 577889999984 4456667789999997653
No 194
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=28.57 E-value=45 Score=39.27 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=15.6
Q ss_pred CCccccccCcCCCcCcccccCCCCceEeccC
Q 002579 513 LGIICHCCNSEVSPSQFEAHADGGNLLPCDG 543 (905)
Q Consensus 513 ~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDg 543 (905)
....|.+|++-+..--|-+ |.++.+.|-.
T Consensus 359 ~CF~Cv~C~r~ldgipFtv--d~~n~v~Cv~ 387 (468)
T KOG1701|consen 359 GCFTCVVCARCLDGIPFTV--DSQNNVYCVP 387 (468)
T ss_pred CceEEEEeccccCCccccc--cCCCceeeeh
Confidence 3456777776443222322 5556666654
No 195
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=28.47 E-value=18 Score=44.15 Aligned_cols=51 Identities=31% Similarity=0.688 Sum_probs=33.3
Q ss_pred eeeccCCCCCCCCCCCCceeecCCCCCcCCcCCCCcCcCCcccCCCCCCceecCCccchhHHHH
Q 002579 617 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCLKKHKMADLRELPKGKWFCCMDCSRINSVLQ 680 (905)
Q Consensus 617 C~vC~~~df~~sg~~~~~LI~CDqC~rayHv~CL~p~~~~~L~evP~g~WfCp~~C~~I~~~Lq 680 (905)
|.+|...+ -.=.|..+....|+.|...||..|++... | -| +.|.++...-.
T Consensus 514 Ce~Cq~~~-iiyPF~~~~~~rC~~C~avfH~~C~~r~s-------~----~C-PrC~R~q~r~~ 564 (580)
T KOG1829|consen 514 CELCQHND-IIYPFETRNTRRCSTCLAVFHKKCLRRKS-------P----CC-PRCERRQKRAE 564 (580)
T ss_pred eeeccCCC-cccccccccceeHHHHHHHHHHHHHhccC-------C----CC-CchHHHHHHhh
Confidence 55663322 12345567789999999999999997521 1 15 78877755443
No 196
>PHA02926 zinc finger-like protein; Provisional
Probab=27.41 E-value=30 Score=37.57 Aligned_cols=59 Identities=17% Similarity=0.310 Sum_probs=33.1
Q ss_pred cCCCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCC-CCCC---CCCCcccccccccc
Q 002579 511 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECAS-LSSI---PQGDWYCKYCQNMF 572 (905)
Q Consensus 511 ~~~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~-L~~v---P~g~W~Cp~C~~~~ 572 (905)
...+..|++|.+.+..-. ....-....=+.|.+.|+..|+. +... ......||.|+..+
T Consensus 167 ~SkE~eCgICmE~I~eK~---~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 167 VSKEKECGICYEVVYSKR---LENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred ccCCCCCccCcccccccc---ccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 345688999997542100 00010112234677888888884 2221 12357899999765
No 197
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=26.74 E-value=31 Score=33.12 Aligned_cols=49 Identities=22% Similarity=0.609 Sum_probs=31.4
Q ss_pred CCCccccccCcCCCcCcccccCCCCceEec------cCC---CcccccccCC------C-CCCCCCCcccccccc
Q 002579 512 GLGIICHCCNSEVSPSQFEAHADGGNLLPC------DGC---PRAFHKECAS------L-SSIPQGDWYCKYCQN 570 (905)
Q Consensus 512 ~~gi~C~~C~~~~SpS~FE~HAdgG~LL~C------DgC---~~afH~~CL~------L-~~vP~g~W~Cp~C~~ 570 (905)
..|..|-.|.+... +....| ..| ...|-..||- + +-..+.+|.||.|+.
T Consensus 5 ~~g~~CHqCrqKt~----------~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 5 VNGKTCHQCRQKTL----------DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCCCchhhcCCCC----------CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 45677888886422 223344 445 7778888873 2 223567899999984
No 198
>PLN02195 cellulose synthase A
Probab=25.63 E-value=50 Score=42.61 Aligned_cols=56 Identities=25% Similarity=0.631 Sum_probs=44.1
Q ss_pred CCCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCCCCCCCCCCccccccccccc
Q 002579 512 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFE 573 (905)
Q Consensus 512 ~~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~L~~vP~g~W~Cp~C~~~~~ 573 (905)
..+.+|.+|+..+-.. ++|.-.+-|..|.-.....|+.- +..+|.=.||.|+..+.
T Consensus 4 ~~~~~c~~cgd~~~~~-----~~g~~fvaC~eC~~pvCrpCyey-er~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 4 SGAPICATCGEEVGVD-----SNGEAFVACHECSYPLCKACLEY-EIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCCccceecccccCcC-----CCCCeEEEeccCCCccccchhhh-hhhcCCccCCccCCccc
Confidence 3567999999865543 36777799999988888889854 56788999999988765
No 199
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=24.97 E-value=21 Score=31.85 Aligned_cols=27 Identities=37% Similarity=0.778 Sum_probs=20.9
Q ss_pred cceeEEeEEeeEEEEEEeccCCCCCCcc
Q 002579 41 CKRFKVTKVNGFIVYSRVKRSRFSNSDD 68 (905)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (905)
=-+|.|+ |||-+|||++...+|-+.+.
T Consensus 42 ~G~FEV~-v~g~lI~SK~~~g~fP~~~~ 68 (76)
T PF10262_consen 42 TGAFEVT-VNGELIFSKLESGRFPDPDE 68 (76)
T ss_dssp TT-EEEE-ETTEEEEEHHHHTSSS-HHH
T ss_pred CCEEEEE-EccEEEEEehhcCCCCCHHH
Confidence 3469985 89999999999998877655
No 200
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=24.82 E-value=26 Score=40.12 Aligned_cols=53 Identities=28% Similarity=0.610 Sum_probs=35.4
Q ss_pred CCCccccccCcCCCcCcccccCCCCceEeccCCCccc--------ccccCCCC--CCCC-CCccccccccc
Q 002579 512 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAF--------HKECASLS--SIPQ-GDWYCKYCQNM 571 (905)
Q Consensus 512 ~~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~af--------H~~CL~L~--~vP~-g~W~Cp~C~~~ 571 (905)
..+..|.+|+..+|..+ . -|+.|..|...| |..|..-. .+.. ..-.||.|+..
T Consensus 13 dl~ElCPVCGDkVSGYH------Y-GLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQ 76 (475)
T KOG4218|consen 13 DLGELCPVCGDKVSGYH------Y-GLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQ 76 (475)
T ss_pred ccccccccccCccccce------e-eeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHH
Confidence 45789999998887643 3 489999997766 44565311 1221 24689999853
No 201
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.73 E-value=17 Score=42.01 Aligned_cols=47 Identities=32% Similarity=0.625 Sum_probs=30.2
Q ss_pred ccccccCcCCCcCcccccCCCCceEeccCCCcccccccCCCCCCCCCC-c--cccccccc
Q 002579 515 IICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGD-W--YCKYCQNM 571 (905)
Q Consensus 515 i~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~L~~vP~g~-W--~Cp~C~~~ 571 (905)
-.|.+|-. +-| ...++--=..|++.||..|+ ..|-+++ | -||.|+..
T Consensus 5 A~C~Ic~d-~~p-------~~~~l~~i~~cGhifh~~cl--~qwfe~~Ps~R~cpic~ik 54 (465)
T KOG0827|consen 5 AECHICID-GRP-------NDHELGPIGTCGHIFHTTCL--TQWFEGDPSNRGCPICQIK 54 (465)
T ss_pred ceeeEecc-CCc-------cccccccccchhhHHHHHHH--HHHHccCCccCCCCceeec
Confidence 46899942 222 12344444568999999999 4555543 5 69999843
No 202
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=23.68 E-value=47 Score=29.99 Aligned_cols=33 Identities=36% Similarity=0.941 Sum_probs=26.1
Q ss_pred cCCCccccccCcCCCcCcccccCCCCceEecc--CCCcccccccCC
Q 002579 511 NGLGIICHCCNSEVSPSQFEAHADGGNLLPCD--GCPRAFHKECAS 554 (905)
Q Consensus 511 ~~~gi~C~~C~~~~SpS~FE~HAdgG~LL~CD--gC~~afH~~CL~ 554 (905)
......|..|.+ ..|-.+-|. +|...||..|.-
T Consensus 33 ~~~~~~C~~C~~-----------~~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 33 RRRKLKCSICKK-----------KGGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred HHhCCCCcCCCC-----------CCCeEEEEeCCCCCcEEChHHHc
Confidence 345568999996 347788886 699999999984
No 203
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=23.62 E-value=23 Score=26.24 Aligned_cols=28 Identities=21% Similarity=0.532 Sum_probs=12.1
Q ss_pred eeeccCCCCCCCCCCCCceeecCCCCCcCCcCCC
Q 002579 617 CLLCRGCDFSKSGFGPRTILLCDQCEREFHVGCL 650 (905)
Q Consensus 617 C~vC~~~df~~sg~~~~~LI~CDqC~rayHv~CL 650 (905)
|.+|++.. .......|.+|+-..|..|.
T Consensus 3 C~~C~~~~------~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 3 CDACGKPI------DGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp -TTTS----------S--EEE-TTT-----HHHH
T ss_pred CCcCCCcC------CCCceEECccCCCccChhcC
Confidence 77888752 22478999999999999873
No 204
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=23.24 E-value=32 Score=27.84 Aligned_cols=39 Identities=23% Similarity=0.676 Sum_probs=17.9
Q ss_pred ccccCcCCCcCcccccCCCCceEecc--CCCcccccccCC--CCCCCCCCcccccc
Q 002579 517 CHCCNSEVSPSQFEAHADGGNLLPCD--GCPRAFHKECAS--LSSIPQGDWYCKYC 568 (905)
Q Consensus 517 C~~C~~~~SpS~FE~HAdgG~LL~CD--gC~~afH~~CL~--L~~vP~g~W~Cp~C 568 (905)
|..|.+.++ .-+.|. .|+..+|..|+. +...... .||.|
T Consensus 1 C~~C~~iv~-----------~G~~C~~~~C~~r~H~~C~~~y~r~~~~~--~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVT-----------QGQRCSNRDCNVRLHDDCFKKYFRHRSNP--KCPNC 43 (43)
T ss_dssp -TTT-SB-S-----------SSEE-SS--S--EE-HHHHHHHTTT-SS---B-TTT
T ss_pred CcccchhHe-----------eeccCCCCccCchHHHHHHHHHHhcCCCC--CCcCC
Confidence 567776544 124576 699999999996 3333322 78876
No 205
>COG4393 Predicted membrane protein [Function unknown]
Probab=22.02 E-value=81 Score=36.21 Aligned_cols=63 Identities=19% Similarity=0.350 Sum_probs=36.7
Q ss_pred CCCCcceeEeeeccCCCCCCCeEeEeeCceeeccccccCCCccccccCcCCCcCcccccCCCCceEeccCCCc
Q 002579 474 TPKDQRLHKLVFDESGLPDGTEVGYYACGQKLLEGYKNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPR 546 (905)
Q Consensus 474 ~~rd~~LhKllF~~ggl~dgtev~Y~~~gq~ll~G~~~~~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~ 546 (905)
..||..||+.++ ...||..|.+..=.+.-.++.-----+.|.+|+..--. ..|+-+.|-+|+-
T Consensus 297 ~vrDgkLHRF~y---IA~dGkaVRFflInk~pdr~s~~avfDAC~iCGd~GYv-------~e~dqvICv~C~V 359 (405)
T COG4393 297 QVRDGKLHRFVY---IADDGKAVRFFLINKRPDRLSLGAVFDACDICGDQGYV-------MEGDQVICVRCDV 359 (405)
T ss_pred HcccCceEEEEE---EccCCcEEEEEEEecCCCCCCceeeehHHHhccccceE-------eECCEEEEEEccE
Confidence 679999999998 66778778766321111111111123678888842111 2456777888763
No 206
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=21.93 E-value=67 Score=31.85 Aligned_cols=50 Identities=12% Similarity=0.260 Sum_probs=32.8
Q ss_pred eecCccCCChhHHHHHHHHHHhhhcCccEEEecch-hhHHHHHHhccCcEEc
Q 002579 805 TSKINHGKGYFQLLFACIEKLLSFLRVKSIVLPAA-EEAESIWTDKFGFKKI 855 (905)
Q Consensus 805 T~~~yRgqG~gr~L~~~IE~~L~~lgV~~LvLpA~-~~a~~~wt~kfGF~~i 855 (905)
|.+..||+|+|++|++.+.+. ..+....+.++-- +-..+|..+-+|-+..
T Consensus 54 Vhes~QR~G~Gk~LF~~ML~~-e~~~p~~~a~DrPS~Kll~Fl~Khy~L~~~ 104 (120)
T PF05301_consen 54 VHESRQRRGYGKRLFDHMLQE-ENVSPHQLAIDRPSPKLLSFLKKHYGLQRY 104 (120)
T ss_pred EEeceeccCchHHHHHHHHHH-cCCCcccceecCCcHHHHHHHHHhcCCCcC
Confidence 789999999999999988766 2233334444432 2356666665665543
No 207
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.84 E-value=25 Score=39.35 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=35.6
Q ss_pred ccCCCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCCCCCCCCCCccccccccccccc
Q 002579 510 KNGLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQGDWYCKYCQNMFERK 575 (905)
Q Consensus 510 ~~~~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~L~~vP~g~W~Cp~C~~~~~ke 575 (905)
+......|..|.+.. .-..|.-|++.|...|+ .+|-...--||.|+..+++.
T Consensus 235 i~~a~~kC~LCLe~~------------~~pSaTpCGHiFCWsCI--~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 235 IPEATRKCSLCLENR------------SNPSATPCGHIFCWSCI--LEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCCCCceEEEecCC------------CCCCcCcCcchHHHHHH--HHHHccccCCCcccccCCCc
Confidence 344557899999643 23457789999999998 34443334499999876643
No 208
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.37 E-value=41 Score=42.58 Aligned_cols=39 Identities=21% Similarity=0.517 Sum_probs=28.5
Q ss_pred ccccccCcCCCcCcccccCCCCceEe-ccCCCcccccccCCCCCCCCCCcccccccc
Q 002579 515 IICHCCNSEVSPSQFEAHADGGNLLP-CDGCPRAFHKECASLSSIPQGDWYCKYCQN 570 (905)
Q Consensus 515 i~C~~C~~~~SpS~FE~HAdgG~LL~-CDgC~~afH~~CL~L~~vP~g~W~Cp~C~~ 570 (905)
..|+.|+..+ ++-. --.|.++||+.|+. +++--||.|..
T Consensus 841 skCs~C~~~L------------dlP~VhF~CgHsyHqhC~e-----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTL------------DLPFVHFLCGHSYHQHCLE-----DKEDKCPKCLP 880 (933)
T ss_pred eeecccCCcc------------ccceeeeecccHHHHHhhc-----cCcccCCccch
Confidence 3799998522 2222 22689999999996 66789999986
No 209
>PF07943 PBP5_C: Penicillin-binding protein 5, C-terminal domain; InterPro: IPR012907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry contains proteins that are annotated as penicillin-binding protein 5 and 6. These belong to MEROPS peptidase family S11 (D-Ala-D-Ala carboxypeptidase A family, clan SE). Penicillin-binding protein 5 expressed by Escherichia coli functions as a D-alanyl-D-alanine carboxypeptidase. It is composed of two domains that are oriented at approximately right angles to each other. The N-terminal domain (IPR001967 from INTERPRO) is the catalytic domain. The C-terminal domain, this entry, is organised into a sandwich of two anti-parallel beta-sheets, and has a relatively hydrophobic surface as compared to the N-terminal domain. Its precise function is unknown; it may mediate interactions with other cell wall-synthesising enzymes, thus allowing the protein to be recruited to areas of active cell wall synthesis. It may also function as a linker domain that positions the active site in the catalytic domain closer to the peptidoglycan layer, to allow it to interact with cell wall peptides []. ; GO: 0009002 serine-type D-Ala-D-Ala carboxypeptidase activity, 0006508 proteolysis; PDB: 3A3J_A 3MFD_B 1XP4_D 3MZD_A 1NZU_A 1NJ4_A 1Z6F_A 3MZF_A 1NZO_A 3MZE_A ....
Probab=21.31 E-value=1.1e+02 Score=27.34 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=23.5
Q ss_pred CCeEEEEEEEEEeCCeeEEEeeeEeec
Q 002579 781 NSSVVSAGILRVFGQEVAELPLVATSK 807 (905)
Q Consensus 781 ~~~vVsaA~lri~g~~vAElp~VAT~~ 807 (905)
-|+.||.+.+..-|..++++|++|...
T Consensus 62 kG~~vG~~~v~~~~~~i~~vpL~a~~~ 88 (91)
T PF07943_consen 62 KGQVVGTLTVYLDGKLIGEVPLVASED 88 (91)
T ss_dssp TTSEEEEEEEEETTEEEEEEEEEESS-
T ss_pred CCCEEEEEEEEECCEEEEEEEEEECCc
Confidence 389999999988888999999999754
No 210
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=20.44 E-value=69 Score=38.05 Aligned_cols=43 Identities=23% Similarity=0.561 Sum_probs=31.1
Q ss_pred cccccCCCCceEeccCCCcccccccCC---CC----------CCCCCCcccccccc
Q 002579 528 QFEAHADGGNLLPCDGCPRAFHKECAS---LS----------SIPQGDWYCKYCQN 570 (905)
Q Consensus 528 ~FE~HAdgG~LL~CDgC~~afH~~CL~---L~----------~vP~g~W~Cp~C~~ 570 (905)
.|....++-.++-||.|.+.-|..|.= +- ...++.++|..|..
T Consensus 136 kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~ 191 (446)
T PF07227_consen 136 KFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGK 191 (446)
T ss_pred CcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCC
Confidence 354445777899999999999999971 10 01345699999975
No 211
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.41 E-value=35 Score=38.53 Aligned_cols=49 Identities=22% Similarity=0.432 Sum_probs=34.0
Q ss_pred CCCccccccCcCCCcCcccccCCCCceEeccCCCcccccccCCCCCCCC-CCccccccccc
Q 002579 512 GLGIICHCCNSEVSPSQFEAHADGGNLLPCDGCPRAFHKECASLSSIPQ-GDWYCKYCQNM 571 (905)
Q Consensus 512 ~~gi~C~~C~~~~SpS~FE~HAdgG~LL~CDgC~~afH~~CL~L~~vP~-g~W~Cp~C~~~ 571 (905)
+.|..|.+|-..+. .++-+----|++.||..|++ .|-. ....||.|+..
T Consensus 321 ~~GveCaICms~fi---------K~d~~~vlPC~H~FH~~Cv~--kW~~~y~~~CPvCrt~ 370 (374)
T COG5540 321 DKGVECAICMSNFI---------KNDRLRVLPCDHRFHVGCVD--KWLLGYSNKCPVCRTA 370 (374)
T ss_pred CCCceEEEEhhhhc---------ccceEEEeccCceechhHHH--HHHhhhcccCCccCCC
Confidence 45688999996543 22334445678999999994 4433 46889999854
Done!