Query 002581
Match_columns 905
No_of_seqs 587 out of 6129
Neff 8.5
Searched_HMMs 29240
Date Tue Mar 26 16:08:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002581.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1300-1303//hhsearch_pdb/002581hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eco_A Uncharacterized protein 1.0 1 1 316.5 20.0 315 8-348 56-501 (636)
2 3rgz_A Protein brassinosteroid 1.0 1 1 315.5 19.8 316 8-350 29-383 (768)
3 3rgz_A Protein brassinosteroid 1.0 1 1 314.4 26.3 297 53-350 201-529 (768)
4 4ecn_A Leucine-rich repeat pro 1.0 1 1 308.2 22.4 305 11-332 285-714 (876)
5 4eco_A Uncharacterized protein 1.0 1 1 293.1 18.6 267 76-348 81-470 (636)
6 3v47_A TOLL-like receptor 5B a 1.0 1 1 276.8 19.9 300 50-349 28-361 (455)
7 2id5_A Lingo-1, leucine rich r 1.0 1 1 276.6 22.3 316 38-353 14-338 (477)
8 3j0a_A TOLL-like receptor 5; m 1.0 1 1 275.5 31.3 300 50-349 22-376 (844)
9 1ogq_A PGIP-2, polygalacturona 1.0 1 1 273.8 15.4 275 8-325 23-302 (313)
10 4aoj_A High affinity nerve gro 1.0 1 1 270.7 7.8 173 642-829 40-320 (329)
No 1
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=316.47 Aligned_cols=315 Identities=19% Similarity=0.277 Sum_probs=255.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 86896477898879776787777889999994220788999960107799951475468898001599999799877998
Q 002581 8 AVRLWNISGNPCSGSALNATDSAFESPDNNPAIVCDCTFDNGATCHITKLRVYALNKKGVIPEELVTLQYLTFLKIDRNF 87 (905)
Q Consensus 8 ~~~~w~~~~~~c~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~i~~L~l~~~~~~~~~p~~l~~L~~L~~L~L~~N~ 87 (905)
....|+...|+|. |+ ...||.|+.. ++|+.|++.++++.|.+|+.+..|++|++|+|++|.
T Consensus 56 ~~~~W~~~~~~c~----w~---------~~~GV~C~~~------~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~ 116 (636)
T 4eco_A 56 PGANWNFNKELDM----WG---------AQPGVSLNSN------GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHG 116 (636)
T ss_dssp --CCCCCSSCGGG----TT---------CCTTEEECTT------CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGG
T ss_pred CCCCCCCCCCCCC----CC---------CCCCEEECCC------CCEEEEEECCCCCCCCCCHHHHCCCCCEEEECCCCC
T ss_conf 5788777998000----14---------7798487678------978899842766577288578568451189876885
Q ss_pred C------------------------------------------------------------------------------C
Q ss_conf 9------------------------------------------------------------------------------9
Q 002581 88 F------------------------------------------------------------------------------T 89 (905)
Q Consensus 88 l------------------------------------------------------------------------------~ 89 (905)
+ +
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~ 196 (636)
T 4eco_A 117 EKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196 (636)
T ss_dssp GGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEE
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCC
T ss_conf 12377433453235673388888887657775541170666778877776427554654101334421300101367775
Q ss_pred CCCCHHHCCCCCCCEEECCCCCCCCC-----------------CCCCCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 98952113895566775136658898-----------------861233--99878747633665889999233587776
Q 002581 90 GPLPSFIGNLSRLTLLSLAHNVFSGP-----------------VPRELG--NLKELNLLSLANNNFSGALPPEIGNLAKL 150 (905)
Q Consensus 90 ~~~p~~l~~L~~L~~L~Ls~N~l~~~-----------------~p~~l~--~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L 150 (905)
+ +|..|+++++|++|+|++|.+++. +|..++ ++++|++|+|++|.+.+.+|..|+++++|
T Consensus 197 ~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 197 F-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp E-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred C-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCCCC
T ss_conf 0-787772564787898868823664232212222210010248632200446878889804885776283888349997
Q ss_pred CEEEECCCC-CCC-CCCHHHHCC------CCCCEECCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 477803447-788-886122116------7664000257625688998--877764578243225568887982235999
Q 002581 151 EELYIDSCG-ASG-EIPSTFAKL------HNMQILRASDAHFTGKIPD--FIGNWTKLTALRLQGNSFQGPIPSSLSKLA 220 (905)
Q Consensus 151 ~~L~L~~n~-l~~-~~p~~l~~L------~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 220 (905)
++|++++|. +.+ .+|..+.++ ++|+.|++++|.++ .+|. .++.+++|+.|++++|.+.|.+| .+..++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred CEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHHHHCCCCCCCEEECCCCCCCCCHH-HHCCCC
T ss_conf 8897847988766533578875430465788888989799377-66765554257888989690880705166-647889
Q ss_pred CCCEEEECCCCCCCCCHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCC--CCCEEECCCCCCCCCCCCCCC-------C
Q ss_conf 9989980286367789243407875-44112225203588983347999--989995668968766881113-------9
Q 002581 221 SLESLRISDIYFVSSSLDFVMSLKN-LKDLSLRNALITGTIPSGIGELQ--NLQTLDLSFNNLTGQIPRTLF-------N 290 (905)
Q Consensus 221 ~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~~l~-------~ 290 (905)
+|+.|++++|.+. ..+..+..+++ |+.|++++|.++ .+|..+..+. +|+.|++++|.+.+.+|..+. .
T Consensus 354 ~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 354 KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred CCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCC
T ss_conf 8898989899403-033756510236868985298275-44665533345766889774885788652442002201125
Q ss_pred CCCCCEEECCCCCCCCCCCCC---CCCCCCEEEEECCCCCCCCCCCCCC----------CCC-CCCCCCCCE
Q ss_conf 999979978688696679988---8999889980158799989811333----------351-002344310
Q 002581 291 IDSLNYLFLGNNSLSGTLPTQ---KSENLQNIDLSYNHLSGPFPSWVTS----------SLQ-MNLAVNNFT 348 (905)
Q Consensus 291 l~~L~~L~Ls~N~l~g~~p~~---~~~~L~~LdLs~N~lsg~~p~~~~~----------~l~-l~l~~N~~~ 348 (905)
+.+|+.|++++|.+. .+|.. ..++|+.|++++|.++ .+|..... .++ ++++.|.++
T Consensus 432 ~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 432 GINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp CCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred CCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCCCEEECCCCCCC
T ss_conf 898888977279668-678788715898898989799788-7397884044001221477338989699388
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=315.53 Aligned_cols=316 Identities=29% Similarity=0.400 Sum_probs=174.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEECCCCCCCC---CCCCCCCCCCCCEEECC
Q ss_conf 868964778988797767877778899999942207889999601077999514754688---98001599999799877
Q 002581 8 AVRLWNISGNPCSGSALNATDSAFESPDNNPAIVCDCTFDNGATCHITKLRVYALNKKGV---IPEELVTLQYLTFLKID 84 (905)
Q Consensus 8 ~~~~w~~~~~~c~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~i~~L~l~~~~~~~~---~p~~l~~L~~L~~L~L~ 84 (905)
.+.+|+.+.|+|. | .||.|+ ..+|+.|++.+..+.|. +++.+..+++|+.++++
T Consensus 29 ~l~~W~~~~~~C~----w------------~gv~C~-------~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~ 85 (768)
T 3rgz_A 29 LLPDWSSNKNPCT----F------------DGVTCR-------DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLS 85 (768)
T ss_dssp SSTTCCTTSCGGG----S------------TTEEEE-------TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECT
T ss_pred CCCCCCCCCCCCC----C------------CCEEEC-------CCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCC
T ss_conf 1468789998768----8------------413878-------9927898778998677557669657316802246786
Q ss_pred CCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEEEECCCCCC
Q ss_conf 9989998952113895566775136658898861--23399878747633665889999233-58777647780344778
Q 002581 85 RNFFTGPLPSFIGNLSRLTLLSLAHNVFSGPVPR--ELGNLKELNLLSLANNNFSGALPPEI-GNLAKLEELYIDSCGAS 161 (905)
Q Consensus 85 ~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~--~l~~L~~L~~L~Ls~N~l~~~~p~~l-~~L~~L~~L~L~~n~l~ 161 (905)
.+.+. .+|..|+++++|++|+|++|.+.+.+|. .++++++|++|+|++|.+.+..|..+ .++++|++|++++|.+.
T Consensus 86 ~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 164 (768)
T 3rgz_A 86 NSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164 (768)
T ss_dssp TSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE
T ss_pred CCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCC
T ss_conf 88867-87033245788998989898578707896787278899989896882677479778563889998989798358
Q ss_pred CCCCHH---HHCCC----------------------CCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 888612---21167----------------------66400025762568899887776457824322556888798223
Q 002581 162 GEIPST---FAKLH----------------------NMQILRASDAHFTGKIPDFIGNWTKLTALRLQGNSFQGPIPSSL 216 (905)
Q Consensus 162 ~~~p~~---l~~L~----------------------~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 216 (905)
+..+.. +.+++ +|++|++++|.+.+.+|. ++.+++|+.|++++|.+.+.+|..+
T Consensus 165 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l 243 (768)
T 3rgz_A 165 GANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI 243 (768)
T ss_dssp EETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT
T ss_pred CCCCHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHH
T ss_conf 858715566435898898989788034657845478689898928827887711-1269999989794885878165777
Q ss_pred CCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 599999899802863677892434078754411222520358898334799-9989995668968766881113999997
Q 002581 217 SKLASLESLRISDIYFVSSSLDFVMSLKNLKDLSLRNALITGTIPSGIGEL-QNLQTLDLSFNNLTGQIPRTLFNIDSLN 295 (905)
Q Consensus 217 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 295 (905)
..+++|+.|++++|.+.+..+.. .+++|++|++++|.+++.+|..+..+ ++|+.|++++|.+++.+|..+..+++|+
T Consensus 244 ~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 321 (768)
T 3rgz_A 244 STCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321 (768)
T ss_dssp TTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCC
T ss_pred HCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCC
T ss_conf 44888898989888665716724--3687898979178557725888884468688998968967784236775587766
Q ss_pred EEECCCCCCCCCCCC---CCCCCCCEEEEECCCCCCCCCCCCC--C-CCC-CCCCCCCCEEC
Q ss_conf 997868869667998---8899988998015879998981133--3-351-00234431003
Q 002581 296 YLFLGNNSLSGTLPT---QKSENLQNIDLSYNHLSGPFPSWVT--S-SLQ-MNLAVNNFTFD 350 (905)
Q Consensus 296 ~L~Ls~N~l~g~~p~---~~~~~L~~LdLs~N~lsg~~p~~~~--~-~l~-l~l~~N~~~~~ 350 (905)
.|++++|.+.+.+|. ...++|+.|++++|.+++.+|..+. . .++ ++++.|.+++.
T Consensus 322 ~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~ 383 (768)
T 3rgz_A 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383 (768)
T ss_dssp EEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEE
T ss_pred EEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 77897885257379788724888878848478437623098986322771998627874787
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=314.38 Aligned_cols=297 Identities=33% Similarity=0.532 Sum_probs=130.1
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCC---------------
Q ss_conf 07799951475468898001599999799877998999895211389556677513665889886---------------
Q 002581 53 HITKLRVYALNKKGVIPEELVTLQYLTFLKIDRNFFTGPLPSFIGNLSRLTLLSLAHNVFSGPVP--------------- 117 (905)
Q Consensus 53 ~i~~L~l~~~~~~~~~p~~l~~L~~L~~L~L~~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p--------------- 117 (905)
+++.|++.++.+.+.+|. +..+++|++|++++|.+++.+|..++.+++|++|+|++|.+.+.+|
T Consensus 201 ~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n 279 (768)
T 3rgz_A 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAEN 279 (768)
T ss_dssp TCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSS
T ss_pred CCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 689898928827887711-1269999989794885878165777448888989898886657167243687898979178
Q ss_pred -------CCCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHH-HHCCCCCCEECCCCCCCCCCC
Q ss_conf -------123399-87874763366588999923358777647780344778888612-211676640002576256889
Q 002581 118 -------RELGNL-KELNLLSLANNNFSGALPPEIGNLAKLEELYIDSCGASGEIPST-FAKLHNMQILRASDAHFTGKI 188 (905)
Q Consensus 118 -------~~l~~L-~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~-l~~L~~L~~L~L~~n~l~~~~ 188 (905)
..+..+ ++|++|+|++|.+.+.+|..|+++++|++|++++|.+.+.+|.. +.++++|+.|++++|.+++.+
T Consensus 280 ~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~ 359 (768)
T 3rgz_A 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359 (768)
T ss_dssp EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECC
T ss_pred CCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCC
T ss_conf 55772588888446868899896896778423677558776677897885257379788724888878848478437623
Q ss_pred CCCCCCCC-CCCEEECCCCCCCCCCCCCCCC--CCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98877764-5782432255688879822359--99998998028636778924340787544112225203588983347
Q 002581 189 PDFIGNWT-KLTALRLQGNSFQGPIPSSLSK--LASLESLRISDIYFVSSSLDFVMSLKNLKDLSLRNALITGTIPSGIG 265 (905)
Q Consensus 189 p~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 265 (905)
|..+..+. +|+.|++++|.+.+.+|..+.. +++|+.|++++|.+.+..+..+..+++|+.|++++|.+++.+|..+.
T Consensus 360 p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 439 (768)
T 3rgz_A 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439 (768)
T ss_dssp CTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred CHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 09898632277199862787478767666533247761898977846542487775689879898958846685467774
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC--CCCCCEEEEECCCCCCCCCCCCC--CCCC-C
Q ss_conf 99998999566896876688111399999799786886966799888--99988998015879998981133--3351-0
Q 002581 266 ELQNLQTLDLSFNNLTGQIPRTLFNIDSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFPSWVT--SSLQ-M 340 (905)
Q Consensus 266 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~--~~~L~~LdLs~N~lsg~~p~~~~--~~l~-l 340 (905)
.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+ .++|+.|++++|++++.+|.++. ..++ +
T Consensus 440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 519 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred CCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEE
T ss_conf 49988989897881547189788287773299901995137588788169989989753995189687688568999989
Q ss_pred CCCCCCCEEC
Q ss_conf 0234431003
Q 002581 341 NLAVNNFTFD 350 (905)
Q Consensus 341 ~l~~N~~~~~ 350 (905)
+++.|.+++.
T Consensus 520 ~L~~N~l~~~ 529 (768)
T 3rgz_A 520 KLSNNSFSGN 529 (768)
T ss_dssp ECCSSCCEEE
T ss_pred ECCCCCCCCC
T ss_conf 8978943374
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=308.19 Aligned_cols=305 Identities=18% Similarity=0.256 Sum_probs=160.1
Q ss_pred CCCCCC-----CC--CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 964778-----98--87977678777788999999422078899996010779995147546889800159999979987
Q 002581 11 LWNISG-----NP--CSGSALNATDSAFESPDNNPAIVCDCTFDNGATCHITKLRVYALNKKGVIPEELVTLQYLTFLKI 83 (905)
Q Consensus 11 ~w~~~~-----~~--c~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~i~~L~l~~~~~~~~~p~~l~~L~~L~~L~L 83 (905)
+|+.++ +| | .|........-....||.|++ .++|+.|++.++++.|.+|+.|+.|++|+.|+|
T Consensus 285 ~W~~~~~~~~~~~~~C----~W~~~~~~~~w~~~~GV~C~~------~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdL 354 (876)
T 4ecn_A 285 NWRYYSGTINNTIHSL----NWNFNKELDMWGDQPGVDLDN------NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSF 354 (876)
T ss_dssp GCCCCCSSCSSCCCCC----SCCCSSCGGGTTCCTTEEECT------TSCEEEEECTTTCCEEEECGGGGGCTTCCEEES
T ss_pred CCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCEEECC------CCCEEEEECCCCCCCCCCCHHHHCCCCCEEEEE
T ss_conf 9886898653367764----034666545335768428369------997989987247899948557741555628430
Q ss_pred -CCCCCCCC-----------------------------------------------------------------------
Q ss_conf -79989998-----------------------------------------------------------------------
Q 002581 84 -DRNFFTGP----------------------------------------------------------------------- 91 (905)
Q Consensus 84 -~~N~l~~~----------------------------------------------------------------------- 91 (905)
++|.+.|.
T Consensus 355 ss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~ 434 (876)
T 4ecn_A 355 GTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT 434 (876)
T ss_dssp CCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCEECCCC
T ss_conf 12563356664222344544115678887776666542037511156787877650733243222354423120405666
Q ss_pred -----CCHHHCCCCCCCEEECCCCCCCC-----------------CCCCCCC--CCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf -----95211389556677513665889-----------------8861233--99878747633665889999233587
Q 002581 92 -----LPSFIGNLSRLTLLSLAHNVFSG-----------------PVPRELG--NLKELNLLSLANNNFSGALPPEIGNL 147 (905)
Q Consensus 92 -----~p~~l~~L~~L~~L~Ls~N~l~~-----------------~~p~~l~--~L~~L~~L~Ls~N~l~~~~p~~l~~L 147 (905)
+|..|+++++|++|+|++|.+++ .+|..++ ++++|++|+|++|.+.+.+|..|.++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHHCC
T ss_conf 76152118875699987897968867887465322332222224458744402559997789871898875273877379
Q ss_pred CCCCEEEECCCC-CCC-CCCHHHHCCC-------CCCEECCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 776477803447-788-8861221167-------664000257625688998--87776457824322556888798223
Q 002581 148 AKLEELYIDSCG-ASG-EIPSTFAKLH-------NMQILRASDAHFTGKIPD--FIGNWTKLTALRLQGNSFQGPIPSSL 216 (905)
Q Consensus 148 ~~L~~L~L~~n~-l~~-~~p~~l~~L~-------~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~l 216 (905)
++|+.|+|++|+ +.+ .+|..+.++. +|+.|++++|.+. .+|. .++.+++|+.|++++|.+. .+| .+
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~ 591 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AF 591 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CC
T ss_pred CCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCC-CCCCHHHHHCCCCCCEEECCCCCCC-CCH-HH
T ss_conf 99899989689876566461778752330155688319982289477-6187235515898898989799825-621-22
Q ss_pred CCCCCCCEEEECCCCCCCCCHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCC--CCEEECCCCCCCCCCCCCC---C-
Q ss_conf 59999989980286367789243407875-441122252035889833479999--8999566896876688111---3-
Q 002581 217 SKLASLESLRISDIYFVSSSLDFVMSLKN-LKDLSLRNALITGTIPSGIGELQN--LQTLDLSFNNLTGQIPRTL---F- 289 (905)
Q Consensus 217 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~~~p~~l---~- 289 (905)
..+++|+.|++++|.+. ..+..+..+++ |+.|+|++|.++ .+|..+..+.. |+.|++++|.+.+.+|... .
T Consensus 592 ~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred CCCCCCEEEECCCCCCC-CCHHHHHHCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHCC
T ss_conf 47985007987187125-035877525114989998499787-4764452255677788977088478864320000001
Q ss_pred -CCCCCCEEECCCCCCCCCCCCC---CCCCCCEEEEECCCCCCCCCC
Q ss_conf -9999979978688696679988---899988998015879998981
Q 002581 290 -NIDSLNYLFLGNNSLSGTLPTQ---KSENLQNIDLSYNHLSGPFPS 332 (905)
Q Consensus 290 -~l~~L~~L~Ls~N~l~g~~p~~---~~~~L~~LdLs~N~lsg~~p~ 332 (905)
.+.+|+.|+|++|.+. .+|.. ..++|+.|+|++|.++ .+|.
T Consensus 670 ~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~ 714 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPE 714 (876)
T ss_dssp CCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred CCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCC-CCCH
T ss_conf 35797688983199688-659788713898899989899688-5496
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=293.07 Aligned_cols=267 Identities=23% Similarity=0.304 Sum_probs=196.3
Q ss_pred CCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCC-------------------------------------------
Q ss_conf 9997998779989998952113895566775136658-------------------------------------------
Q 002581 76 QYLTFLKIDRNFFTGPLPSFIGNLSRLTLLSLAHNVF------------------------------------------- 112 (905)
Q Consensus 76 ~~L~~L~L~~N~l~~~~p~~l~~L~~L~~L~Ls~N~l------------------------------------------- 112 (905)
.+++.|+|+++.+.|.+|..+++|++|++|+|++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEECCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 97889984276657728857856845118987688512377433453235673388888887657775541170666778
Q ss_pred -----------------------------------CCCCCCCCCCCCCCCEEECCCCCCCCC-----------------C
Q ss_conf -----------------------------------898861233998787476336658899-----------------9
Q 002581 113 -----------------------------------SGPVPRELGNLKELNLLSLANNNFSGA-----------------L 140 (905)
Q Consensus 113 -----------------------------------~~~~p~~l~~L~~L~~L~Ls~N~l~~~-----------------~ 140 (905)
++ +|..++++++|++|+|++|.+++. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCC
T ss_conf 8777764275546541013344213001013677750-787772564787898868823664232212222210010248
Q ss_pred CCCCC--CCCCCCEEEECCCCCCCCCCHHHHCCCCCCEECCCCCC-CCC-CCCCCCCCC------CCCCEEECCCCCCCC
Q ss_conf 92335--87776477803447788886122116766400025762-568-899887776------457824322556888
Q 002581 141 PPEIG--NLAKLEELYIDSCGASGEIPSTFAKLHNMQILRASDAH-FTG-KIPDFIGNW------TKLTALRLQGNSFQG 210 (905)
Q Consensus 141 p~~l~--~L~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L~Ls~N~l~~ 210 (905)
|..++ ++++|++|++++|.+.+.+|..+.++++|+.|++++|+ +++ .+|..++.+ ++|+.|++++|.++
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred CHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-
T ss_conf 6322004468788898048857762838883499978897847988766533578875430465788888989799377-
Q ss_pred CCCC--CCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEECCCCCCCCCCCCC
Q ss_conf 7982--2359999989980286367789243407875441122252035889833479999-899956689687668811
Q 002581 211 PIPS--SLSKLASLESLRISDIYFVSSSLDFVMSLKNLKDLSLRNALITGTIPSGIGELQN-LQTLDLSFNNLTGQIPRT 287 (905)
Q Consensus 211 ~~p~--~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~ 287 (905)
.+|. .+..+++|+.|++++|.+.+..+ .+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~ 395 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNI 395 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSC
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCHH-HHCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCC-CCCHH
T ss_conf 66765554257888989690880705166-6478898898989899403-033756510236868985298275-44665
Q ss_pred CCCCC--CCCEEECCCCCCCCCCCCCCC---------CCCCEEEEECCCCCCCCCCCCC---CCCC-CCCCCCCCE
Q ss_conf 13999--997997868869667998889---------9988998015879998981133---3351-002344310
Q 002581 288 LFNID--SLNYLFLGNNSLSGTLPTQKS---------ENLQNIDLSYNHLSGPFPSWVT---SSLQ-MNLAVNNFT 348 (905)
Q Consensus 288 l~~l~--~L~~L~Ls~N~l~g~~p~~~~---------~~L~~LdLs~N~lsg~~p~~~~---~~l~-l~l~~N~~~ 348 (905)
+..+. +|+.|++++|.+.+.+|..+. .+|+.|++++|.++ .+|.... ..++ ++++.|.++
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS
T ss_pred HHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCC
T ss_conf 533345766889774885788652442002201125898888977279668-678788715898898989799788
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=1.00 E-value=1 Score=276.75 Aligned_cols=300 Identities=20% Similarity=0.219 Sum_probs=214.1
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 6010779995147546889800159999979987799899989-521138955667751366588988612339987874
Q 002581 50 ATCHITKLRVYALNKKGVIPEELVTLQYLTFLKIDRNFFTGPL-PSFIGNLSRLTLLSLAHNVFSGPVPRELGNLKELNL 128 (905)
Q Consensus 50 ~~~~i~~L~l~~~~~~~~~p~~l~~L~~L~~L~L~~N~l~~~~-p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~ 128 (905)
...+++.|++.++.+.+..|..|..+++|++|++++|.+.+.+ +..|..+++|++|+|++|.+.+..|..|+++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCCCCEEEECCCCCCCCCHHHHCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCE
T ss_conf 88756779806883574786575047655578876885442678451336655787728988537658645257534889
Q ss_pred EECCCCCCCCCCCCC--CCCCCCCCEEEECCCCCCCCCCHH-HHCCCCCCEECCCCCCCCCCCCCCCCCC--CCCCEEEC
Q ss_conf 763366588999923--358777647780344778888612-2116766400025762568899887776--45782432
Q 002581 129 LSLANNNFSGALPPE--IGNLAKLEELYIDSCGASGEIPST-FAKLHNMQILRASDAHFTGKIPDFIGNW--TKLTALRL 203 (905)
Q Consensus 129 L~Ls~N~l~~~~p~~--l~~L~~L~~L~L~~n~l~~~~p~~-l~~L~~L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~L 203 (905)
|+|++|.+++..|.. +..+++|++|++++|.+.+..|.. +.++++|+.|++++|.+.+..+..+..+ .+|+.|++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCC
T ss_conf 76878887755447021268120899879999667548002007777466786777865655755631014200010245
Q ss_pred CCCCCCCCCCCC--------CCCCCCCCEEEECCCCCCCCCHHHHHC---CCCCCCCCCCCCCCCCCCC----------C
Q ss_conf 255688879822--------359999989980286367789243407---8754411222520358898----------3
Q 002581 204 QGNSFQGPIPSS--------LSKLASLESLRISDIYFVSSSLDFVMS---LKNLKDLSLRNALITGTIP----------S 262 (905)
Q Consensus 204 s~N~l~~~~p~~--------l~~l~~L~~L~l~~n~~~~~~~~~~~~---l~~L~~L~L~~n~l~~~~p----------~ 262 (905)
+.|.+....+.. +..+++|+.|++++|.+....+..+.. ..+|+.|++++|.+.+... .
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred CCCCCCCCCHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHCCCCCC
T ss_conf 56724225311046321343134650126856788665323033421235563556750344343232210220367523
Q ss_pred CCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC--CCCCCEEEEECCCCCCCCCCCCC--C
Q ss_conf 347--99998999566896876688111399999799786886966799888--99988998015879998981133--3
Q 002581 263 GIG--ELQNLQTLDLSFNNLTGQIPRTLFNIDSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFPSWVT--S 336 (905)
Q Consensus 263 ~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~--~~~L~~LdLs~N~lsg~~p~~~~--~ 336 (905)
.+. ..++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+ ..+|+.|++++|.+++..|..+. .
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred CCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCC
T ss_conf 33443456732898437620134654505477778888998830456866754865687898989866874966726733
Q ss_pred CCC-CCCCCCCCEE
Q ss_conf 351-0023443100
Q 002581 337 SLQ-MNLAVNNFTF 349 (905)
Q Consensus 337 ~l~-l~l~~N~~~~ 349 (905)
.++ ++++.|.++.
T Consensus 348 ~L~~L~Ls~N~l~~ 361 (455)
T 3v47_A 348 KLEVLDLSYNHIRA 361 (455)
T ss_dssp TCCEEECCSSCCCE
T ss_pred CCCEEECCCCCCCC
T ss_conf 58789898996352
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=276.56 Aligned_cols=316 Identities=20% Similarity=0.197 Sum_probs=272.8
Q ss_pred CCEEECCC----CCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCC
Q ss_conf 94220788----99996010779995147546889800159999979987799899989521138955667751366588
Q 002581 38 PAIVCDCT----FDNGATCHITKLRVYALNKKGVIPEELVTLQYLTFLKIDRNFFTGPLPSFIGNLSRLTLLSLAHNVFS 113 (905)
Q Consensus 38 ~~~~C~~~----~~~~~~~~i~~L~l~~~~~~~~~p~~l~~L~~L~~L~L~~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~ 113 (905)
..+.|... .+.....+++.|++.++.+.+..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.+.
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEECCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCC
T ss_conf 87983899867378778999838978799364579767158987899889999437708503208736899889999687
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf 98861233998787476336658899992335877764778034477888861221167664000257625688998877
Q 002581 114 GPVPRELGNLKELNLLSLANNNFSGALPPEIGNLAKLEELYIDSCGASGEIPSTFAKLHNMQILRASDAHFTGKIPDFIG 193 (905)
Q Consensus 114 ~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~p~~~~ 193 (905)
...+..|.++++|++|+|++|.+.+..|..|.++++|+.|++++|.+.+..+..|.++.+|+.|++++|.++...+..+.
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 173 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHT
T ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHC
T ss_conf 43832025877779788999956637965716643599898999955510840035889999897989958614745722
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 76457824322556888798223599999899802863677892434078754411222520358898334799998999
Q 002581 194 NWTKLTALRLQGNSFQGPIPSSLSKLASLESLRISDIYFVSSSLDFVMSLKNLKDLSLRNALITGTIPSGIGELQNLQTL 273 (905)
Q Consensus 194 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 273 (905)
.+++|+.|++++|.+.+..+..+..+++|+.|+++++......+.......+|+.|++++|.++...+..+..+++|+.|
T Consensus 174 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 253 (477)
T 2id5_A 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253 (477)
T ss_dssp TCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEE
T ss_pred CCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEE
T ss_conf 26777688699995757386440467556613588886655568332467632579786993355497784271306862
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC--CCCCCEEEEECCCCCCCCCCCCC--CCCC-CCCCCCCCE
Q ss_conf 566896876688111399999799786886966799888--99988998015879998981133--3351-002344310
Q 002581 274 DLSFNNLTGQIPRTLFNIDSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFPSWVT--SSLQ-MNLAVNNFT 348 (905)
Q Consensus 274 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~--~~~L~~LdLs~N~lsg~~p~~~~--~~l~-l~l~~N~~~ 348 (905)
++++|.+++..+..+..+++|+.|+|++|.+.+..|..+ .++|+.|++++|.+++..+..+. ..++ ++++.|+|.
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCEECHHHHCCCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCC
T ss_conf 89999378468213415525797789898265589888447635898989999576439867578766678985699855
Q ss_pred ECCCC
Q ss_conf 03887
Q 002581 349 FDGSN 353 (905)
Q Consensus 349 ~~~~~ 353 (905)
|++..
T Consensus 334 c~c~~ 338 (477)
T 2id5_A 334 CDCRL 338 (477)
T ss_dssp CSGGG
T ss_pred CCCCH
T ss_conf 76650
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=275.53 Aligned_cols=300 Identities=19% Similarity=0.207 Sum_probs=227.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 6010779995147546889800159999979987799899989-521138955667751366588988612339987874
Q 002581 50 ATCHITKLRVYALNKKGVIPEELVTLQYLTFLKIDRNFFTGPL-PSFIGNLSRLTLLSLAHNVFSGPVPRELGNLKELNL 128 (905)
Q Consensus 50 ~~~~i~~L~l~~~~~~~~~p~~l~~L~~L~~L~L~~N~l~~~~-p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~ 128 (905)
...+++.|++.++.+++..+..|..+++|++|+|++|.+.+.+ |..|.++++|++|+|++|.+.+..|..|+++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCE
T ss_conf 99986888887786783296677662137088678997744419778537877888879899585319767157866587
Q ss_pred EECCCCCCCCCCCCC--CCCCCCCCEEEECCCCCCCCCC-HHHHCCCCCCEECCCCCCCCCCCCCCCCCC--CCCCEEEC
Q ss_conf 763366588999923--3587776477803447788886-122116766400025762568899887776--45782432
Q 002581 129 LSLANNNFSGALPPE--IGNLAKLEELYIDSCGASGEIP-STFAKLHNMQILRASDAHFTGKIPDFIGNW--TKLTALRL 203 (905)
Q Consensus 129 L~Ls~N~l~~~~p~~--l~~L~~L~~L~L~~n~l~~~~p-~~l~~L~~L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~L 203 (905)
|+|++|.+.+..|.. +.++++|++|+|++|.+.+..+ ..|.++++|+.|++++|.+.+..+..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCCCCCEEEC
T ss_conf 01767889734046764556679998889878642325665576388989898989847766788753556775035789
Q ss_pred CCCCCCCCCCCCCCCCCC------CCEEEECCCCCCCCCHHH------------------------------------HH
Q ss_conf 255688879822359999------989980286367789243------------------------------------40
Q 002581 204 QGNSFQGPIPSSLSKLAS------LESLRISDIYFVSSSLDF------------------------------------VM 241 (905)
Q Consensus 204 s~N~l~~~~p~~l~~l~~------L~~L~l~~n~~~~~~~~~------------------------------------~~ 241 (905)
+.|.+.+..+..+..+.+ |+.|++++|.+....+.. +.
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 78866655455332237722357400796578868656778887642744100112121223466444566889855652
Q ss_pred C--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC--CCCCC
Q ss_conf 7--8754411222520358898334799998999566896876688111399999799786886966799888--99988
Q 002581 242 S--LKNLKDLSLRNALITGTIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIDSLNYLFLGNNSLSGTLPTQK--SENLQ 317 (905)
Q Consensus 242 ~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~--~~~L~ 317 (905)
. .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+.+..|..+ .++|+
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred CCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCC
T ss_conf 55547861898979945515863452589999998979818987968836888999898989978851878846899999
Q ss_pred EEEEECCCCCCCCCCCCC--CCCC-CCCCCCCCEE
Q ss_conf 998015879998981133--3351-0023443100
Q 002581 318 NIDLSYNHLSGPFPSWVT--SSLQ-MNLAVNNFTF 349 (905)
Q Consensus 318 ~LdLs~N~lsg~~p~~~~--~~l~-l~l~~N~~~~ 349 (905)
.|++++|.+++..+..+. ..++ ++++.|.++.
T Consensus 342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp EEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred EEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC
T ss_conf 89898998776286661378889998898997786
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=1.00 E-value=1 Score=273.75 Aligned_cols=275 Identities=27% Similarity=0.458 Sum_probs=206.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEECCCCCCC--CCCCCCCCCCCCCEEECCC
Q ss_conf 86896477898879776787777889999994220788999960107799951475468--8980015999997998779
Q 002581 8 AVRLWNISGNPCSGSALNATDSAFESPDNNPAIVCDCTFDNGATCHITKLRVYALNKKG--VIPEELVTLQYLTFLKIDR 85 (905)
Q Consensus 8 ~~~~w~~~~~~c~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~i~~L~l~~~~~~~--~~p~~l~~L~~L~~L~L~~ 85 (905)
.+..|+.+.|+|.+ .| .||.|+... ...+++.|++.++.+.+ .+|..+..+++|++|++++
T Consensus 23 ~l~~W~~~~~~C~~--~w------------~gv~C~~~~---~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~ 85 (313)
T 1ogq_A 23 TLSSWLPTTDCCNR--TW------------LGVLCDTDT---QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG 85 (313)
T ss_dssp GGTTCCTTSCTTTT--CS------------TTEEECCSS---SCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEE
T ss_pred CCCCCCCCCCCCCC--CC------------CCEEECCCC---CCCEEEEEECCCCCCCCCCCCCHHHHCCCCCCEEECCC
T ss_conf 02477788997768--78------------625857898---77648899888997468765696574788888632788
Q ss_pred -CCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf -9899989521138955667751366588988612339987874763366588999923358777647780344778888
Q 002581 86 -NFFTGPLPSFIGNLSRLTLLSLAHNVFSGPVPRELGNLKELNLLSLANNNFSGALPPEIGNLAKLEELYIDSCGASGEI 164 (905)
Q Consensus 86 -N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~L~~n~l~~~~ 164 (905)
|.+.+.+|..|+++++|++|+|++|.+++.+|..+.++++|++|+|++|.+.+.+|..+..+++|++|++++|.+.+.+
T Consensus 86 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 165 (313)
T 1ogq_A 86 INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165 (313)
T ss_dssp ETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred CCCCCCCCCHHHHCCCCCCEEECCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCC
T ss_conf 88636658966846789997989688467748978837898898969778357727867845988786889488445818
Q ss_pred CHHHHCCC-CCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCC
Q ss_conf 61221167-66400025762568899887776457824322556888798223599999899802863677892434078
Q 002581 165 PSTFAKLH-NMQILRASDAHFTGKIPDFIGNWTKLTALRLQGNSFQGPIPSSLSKLASLESLRISDIYFVSSSLDFVMSL 243 (905)
Q Consensus 165 p~~l~~L~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l 243 (905)
|..+..+. +|+.|++++|.+++.+|..+..+. |+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 166 p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l----------- 233 (313)
T 1ogq_A 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL----------- 233 (313)
T ss_dssp CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE-----------
T ss_pred CHHHHHHHHCCCEEECCCCEEECCCCHHHHCCC-CCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCE-----------
T ss_conf 778863453185998859862152776886881-36897917846583777774678887898977721-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCEEEEE
Q ss_conf 754411222520358898334799998999566896876688111399999799786886966799888-9998899801
Q 002581 244 KNLKDLSLRNALITGTIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIDSLNYLFLGNNSLSGTLPTQK-SENLQNIDLS 322 (905)
Q Consensus 244 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~-~~~L~~LdLs 322 (905)
++.++. +..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|... .++|+.++++
T Consensus 234 -------------~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~ 299 (313)
T 1ogq_A 234 -------------AFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299 (313)
T ss_dssp -------------CCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTC
T ss_pred -------------EEECCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHC
T ss_conf -------------422586-344687898989288216848757866847898988688330517988532545867756
Q ss_pred CCC
Q ss_conf 587
Q 002581 323 YNH 325 (905)
Q Consensus 323 ~N~ 325 (905)
+|.
T Consensus 300 ~N~ 302 (313)
T 1ogq_A 300 NNK 302 (313)
T ss_dssp SSS
T ss_pred CCC
T ss_conf 899
No 10
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=270.65 Aligned_cols=173 Identities=28% Similarity=0.466 Sum_probs=140.4
Q ss_pred HCCCCCCCCCCCCCCEEEEEEEEC------CCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEE
Q ss_conf 159997894354463619999917------99399999912228103899999999995089999101873998099648
Q 002581 642 TKDFDPSNKLGEGGYGPVYKGTLS------DGRVIAVKQLSIASHQGKNQFVNEIATISAVQHRNLVRLYGCCIEGARRL 715 (905)
Q Consensus 642 t~~~~~~~~lG~G~fG~Vy~g~~~------~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~~~H~niv~l~g~~~~~~~~~ 715 (905)
.++|...+.||+|+||+||+|++. +++.||||+++.......++|.+|+++|++++|||||+++|+|.+....+
T Consensus 40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 119 (329)
T 4aoj_A 40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLL 119 (329)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEE
T ss_conf 89928877971477848998998786657789699999977579799999999999998589989996989999899899
Q ss_pred EEEC----------------------------------------------------------------------------
Q ss_conf 9973----------------------------------------------------------------------------
Q 002581 716 LVYD---------------------------------------------------------------------------- 719 (905)
Q Consensus 716 Lv~e---------------------------------------------------------------------------- 719 (905)
+|||
T Consensus 120 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~~~~~~Ki 199 (329)
T 4aoj_A 120 MVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKI 199 (329)
T ss_dssp EEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEE
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHEEECCCCCEEE
T ss_conf 99982799939999986075410012211245788999999999999999999984088422666676489889996897
Q ss_pred -------------------------CCCCHHHHCCCCCCCCCCEEEECHHHHHHHH-CCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf -------------------------8888233314988744742753234678672-99999999961021199999988
Q 002581 720 -------------------------GYLAPEYAMRGHLTEKADVFSFGVVALEVIS-GRANSDNSLDTEKIYLLEWAWNL 773 (905)
Q Consensus 720 -------------------------~y~APE~~~~~~~t~ksDVySfGvvl~El~t-g~~p~~~~~~~~~~~l~~~~~~~ 773 (905)
+|||||++.+..|+.++|||||||++|||+| |+.||......+ +...+
T Consensus 200 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~---~~~~i--- 273 (329)
T 4aoj_A 200 GDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE---AIDCI--- 273 (329)
T ss_dssp CCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHH---HHHHH---
T ss_pred CCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHH---HHHHH---
T ss_conf 666033365678753004764556566582654479999663001057899999828999999989999---99999---
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 51395243327978889999999999999980238999999989999998527367
Q 002581 774 HENNQSLGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEV 829 (905)
Q Consensus 774 ~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~C~~~~p~~RPsm~ev~~~L~~~~~~ 829 (905)
..+. .+.. +..+...+.+++.+||+.+|++||||.||+++|+...+.
T Consensus 274 -~~g~-----~~~~---p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 274 -TQGR-----ELER---PRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp -HHTC-----CCCC---CTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred -HCCC-----CCCC---CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf -8089-----8998---644639999999997475965792999999999987458
Done!