BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002583
(904 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Alasa
pdb|3HXV|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Glysa
pdb|3HXW|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Sersa
pdb|3HXX|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp
pdb|3HXY|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp, Ala-Amp And Pcp
Length = 441
Score = 351 bits (900), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 190/421 (45%), Positives = 254/421 (60%), Gaps = 38/421 (9%)
Query: 1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 60
MNQ+K +FLG N +RA +Q+C+RAGGKHNDL++VG HHTFFEMLGN+S
Sbjct: 43 MNQFKDVFLGLDKRN-----YSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFS 97
Query: 61 FGDYFKNEAIEWAWELLT--KVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK--FLP 116
FGDYFK +AI +AW LLT K + LP +RL+ T + D+EA +IW K +P
Sbjct: 98 FGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVY--------ESDDEAYEIWEKEVGIP 149
Query: 117 ASRVLPFG-------CKDNFWEMGDTGPCGPCSEIHYDRTGN--RDAASLVNNDDPTCIE 167
R++ G DNFW+MGDTGPCGPC+EI YD + D IE
Sbjct: 150 RERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIE 209
Query: 168 IWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQA 227
IWNIVF+QFNR++DG+++PLP VDTG+G ER+ ++LQ+ SNYD D+F + A+ +
Sbjct: 210 IWNIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKV 269
Query: 228 TGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVR 287
TGA S K + RV+ADHIR+ +F IADG P NE R YVLRRI+RRAVR
Sbjct: 270 TGATDLSNK-----------SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVR 318
Query: 288 YGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQXXXXXXXXXXXXXXSFGKTLLKGIEKF 347
+G+ +L A++ FF LV ++ VMG +LK+ F +TL +G+
Sbjct: 319 HGN-MLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALL 377
Query: 348 KKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRS 407
+ + G L G+ AF L+DTYGFP+DLT + ER + VD GF AM+E R R+R
Sbjct: 378 DEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARE 437
Query: 408 A 408
A
Sbjct: 438 A 438
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|C Chain C, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|D Chain D, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HY0|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY0|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY1|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
pdb|3HY1|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
Length = 441
Score = 349 bits (895), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 189/421 (44%), Positives = 253/421 (60%), Gaps = 38/421 (9%)
Query: 1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 60
MNQ+K +FLG N +RA +Q+C+RAGGKHNDL++VG HHTFFEMLGN+S
Sbjct: 43 MNQFKDVFLGLDKRN-----YSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFS 97
Query: 61 FGDYFKNEAIEWAWELLT--KVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK--FLP 116
FGDYFK +AI +AW LLT K + LP +RL+ T + D+EA +IW K +P
Sbjct: 98 FGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVY--------ESDDEAYEIWEKEVGIP 149
Query: 117 ASRVLPFG-------CKDNFWEMGDTGPCGPCSEIHYDRTGN--RDAASLVNNDDPTCIE 167
R++ G DNFW+MGDTGPCGPC+EI YD + D IE
Sbjct: 150 RERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIE 209
Query: 168 IWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQA 227
IWNIVF+QFNR++DG+++PLP VDT +G ER+ ++LQ+ SNYD D+F + A+ +
Sbjct: 210 IWNIVFMQFNRQADGTMEPLPKPSVDTAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKV 269
Query: 228 TGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVR 287
TGA S K + RV+ADHIR+ +F IADG P NE R YVLRRI+RRAVR
Sbjct: 270 TGATDLSNK-----------SLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVR 318
Query: 288 YGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQXXXXXXXXXXXXXXSFGKTLLKGIEKF 347
+G+ +L A++ FF LV ++ VMG +LK+ F +TL +G+
Sbjct: 319 HGN-MLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALL 377
Query: 348 KKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRS 407
+ + G L G+ AF L+DTYGFP+DLT + ER + VD GF AM+E R R+R
Sbjct: 378 DEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARE 437
Query: 408 A 408
A
Sbjct: 438 A 438
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine: Re-Refined
Length = 464
Score = 346 bits (888), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 179/411 (43%), Positives = 256/411 (62%), Gaps = 33/411 (8%)
Query: 1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 60
M +K +FLG + RA + QKC+R GKHNDL+ VG + HHTFFEMLGN+S
Sbjct: 43 MVPFKNVFLGL-----EKRPYKRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFS 97
Query: 61 FGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPAS 118
FGDYFK EAIE+AWE +T+V +LP ++LY + + DE EA IW + +P+
Sbjct: 98 FGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDE--------EAYRIWNEHIGIPSE 149
Query: 119 RVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNR 178
R+ G +DNFW+MGD GPCGP SEI+ DR + D +EIWN+VF+Q+NR
Sbjct: 150 RIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYEG-------DERYLEIWNLVFMQYNR 202
Query: 179 ESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVG 238
+ +G L PLP ++DTG+G ER+ S+LQ K SN++ D+ P+ ++ +G + Y K
Sbjct: 203 DENGVLTPLPHPNIDTGMGLERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKK-YGEKF- 260
Query: 239 ADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDG 298
+ D+A RV+ADH+R ++FAI+DG P NEGR YV+RRILRRA+R+G + L ++
Sbjct: 261 -----ETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRAMRFGYK-LGIENP 314
Query: 299 FFNGLVNIVVKVMGDVFPELKQXXXXXXXXXXXXXXSFGKTLLKGIEKFKKAAQDV--QG 356
F V++VV +M + +PEL+ F KTL G+E ++ Q +G
Sbjct: 315 FLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEG 374
Query: 357 -KVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSR 406
K LSG++ F +DTYGFP+DL +A E+GL +D+EGF ++E RER+R
Sbjct: 375 RKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERAR 425
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFR|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFS|A Chain A, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFS|B Chain B, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFT|A Chain A, The Crystal Structure Of The Catalytic Fragment Of Alanyl-
Trna Synthetase In Complex Wtih Glycine
pdb|1YGB|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine
Length = 465
Score = 346 bits (888), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 179/411 (43%), Positives = 256/411 (62%), Gaps = 33/411 (8%)
Query: 1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 60
M +K +FLG + RA + QKC+R GKHNDL+ VG + HHTFFEMLGN+S
Sbjct: 44 MVPFKNVFLGL-----EKRPYKRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFS 98
Query: 61 FGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPAS 118
FGDYFK EAIE+AWE +T+V +LP ++LY + + DE EA IW + +P+
Sbjct: 99 FGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDE--------EAYRIWNEHIGIPSE 150
Query: 119 RVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNR 178
R+ G +DNFW+MGD GPCGP SEI+ DR + D +EIWN+VF+Q+NR
Sbjct: 151 RIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYEG-------DERYLEIWNLVFMQYNR 203
Query: 179 ESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVG 238
+ +G L PLP ++DTG+G ER+ S+LQ K SN++ D+ P+ ++ +G + Y K
Sbjct: 204 DENGVLTPLPHPNIDTGMGLERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKK-YGEKF- 261
Query: 239 ADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDG 298
+ D+A RV+ADH+R ++FAI+DG P NEGR YV+RRILRRA+R+G + L ++
Sbjct: 262 -----ETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRAMRFGYK-LGIENP 315
Query: 299 FFNGLVNIVVKVMGDVFPELKQXXXXXXXXXXXXXXSFGKTLLKGIEKFKKAAQDV--QG 356
F V++VV +M + +PEL+ F KTL G+E ++ Q +G
Sbjct: 316 FLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEG 375
Query: 357 -KVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSR 406
K LSG++ F +DTYGFP+DL +A E+GL +D+EGF ++E RER+R
Sbjct: 376 RKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERAR 426
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The
Alanyl-Trna Synthetase
Length = 465
Score = 312 bits (799), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 175/408 (42%), Positives = 248/408 (60%), Gaps = 33/408 (8%)
Query: 4 YKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD 63
+K +FLG + RA + QKC+R GKHNDL+ VG + HHTFFE LGN+SFGD
Sbjct: 47 FKNVFLGL-----EKRPYKRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEXLGNFSFGD 101
Query: 64 YFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRVL 121
YFK EAIE+AWE +T+V +LP ++LY + + DE EA IW + +P+ R+
Sbjct: 102 YFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDE--------EAYRIWNEHIGIPSERIW 153
Query: 122 PFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESD 181
G +DNFW+ GD GPCGP SEI+ DR + D +EIWN+VF Q+NR+ +
Sbjct: 154 RLGEEDNFWQXGDVGPCGPSSEIYVDRGEEYEG-------DERYLEIWNLVFXQYNRDEN 206
Query: 182 GSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADD 241
G L PLP ++DTG G ER+ S+LQ K SN++ D+ P+ ++ +G + Y K
Sbjct: 207 GVLTPLPHPNIDTGXGLERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKK-YGEKF---- 261
Query: 242 ADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFN 301
+ D+A RV+ADH+R ++FAI+DG P NEGR YV+RRILRRA R+G + L ++ F
Sbjct: 262 --ETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRAXRFGYK-LGIENPFLY 318
Query: 302 GLVNIVVKVMGDVFPELKQXXXXXXXXXXXXXXSFGKTLLKGIEKFKKAAQDV--QG-KV 358
V++VV + + +PEL+ F KTL G E ++ Q +G K
Sbjct: 319 KGVDLVVDIXKEPYPELELSREFVKGIVKGEEKRFIKTLKAGXEYIQEVIQKALEEGRKT 378
Query: 359 LSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSR 406
LSG++ F +DTYGFP+DL +A E+GL +D+EGF ++E RER+R
Sbjct: 379 LSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERAR 426
>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain
pdb|2ZZG|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
pdb|2ZZG|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
Length = 752
Score = 156 bits (395), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 174/718 (24%), Positives = 290/718 (40%), Gaps = 157/718 (21%)
Query: 36 KHNDLDDVGKDTYHHTFFEMLGNWSFGD-----YFKNEAIEWAWELLTKVYRL-PADRLY 89
+ D+D+VG H T FEM+ + +F Y+ +E +E A+E TK ++ P D +
Sbjct: 128 RFTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAFEFFTKELKMKPEDITF 187
Query: 90 ATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRT 149
K+N W G G GP E+ Y
Sbjct: 188 ------------------------------------KENPWAGG--GNAGPAFEVLY--- 206
Query: 150 GNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLK------------PLPAKHVDTGLG 197
+E+ +VF+Q+ + + + + P+ K VDTG G
Sbjct: 207 --------------RGLEVATLVFMQYKKAPENAPQDQVVVIKGEKYIPMETKVVDTGYG 252
Query: 198 FERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDA---------DKVDMA 248
ERL + Q + YD V + + +++ G K+ +++ D D+
Sbjct: 253 LERLVWMSQGTPTAYDA-VLGYVVEPLKKMAGIEKIDEKILMENSRLAGMFDIEDLGDLR 311
Query: 249 Y-------RV-------------------VADHIRTLSFAIADGSCPGNEGREYVLRRIL 282
Y RV +ADH + L+F +ADG P N Y+ R ++
Sbjct: 312 YLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVKAGYLARLLI 371
Query: 283 RRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQXXXXXXXXXXXXXXSFGKTLLK 342
R+++R+ E+ + + +V + +K + FPE K+ + +TL +
Sbjct: 372 RKSIRHLREL--GLEVPLSEIVALHIKELHKTFPEFKEMEDIILEMIELEEKKYAETLRR 429
Query: 343 GIEKFKKAAQDVQGKVLSG---QDAFILWDTYGFPLDLTQLMAEERGLLVDI-EGFNNAM 398
G + ++ ++ K + + ++++G ++ + +AE+ G+ V+I + F + +
Sbjct: 430 GSDLVRREIAKLKKKGIKEIPVEKLVTFYESHGLTPEIVKEIAEKEGVKVNIPDNFYSMV 489
Query: 399 DEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGS 458
+ ER+ K+ G ++D + L L +D F
Sbjct: 490 AKEAERT-----KEEKGEELVDFELLKDLPDTRRLYYEDPFM-----------------K 527
Query: 459 EFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSL 518
EF V+ + ++L +++FY E GGQ +D G + V NVQ G +IH
Sbjct: 528 EFDAKVLRVIKDWVILDATAFYPEGGGQPYDTGVLIVNGREVKVTNVQKVGKVIIH---K 584
Query: 519 TEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLR 578
E G F G V K+D+ RR +HT TH+L AL VLG HV Q GS + + R
Sbjct: 585 VEDPGAFKEGMIVHGKIDWKRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWAR 644
Query: 579 FDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYP-DPV 637
D SH K + E L+ IE + N + + V + A+ G R G V P +
Sbjct: 645 LDISHYKRISEEELKEIEMLANRIVMEDRKVTWEWLPRTTAEQKYGFRLYQGGVVPGREI 704
Query: 638 RVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRI 695
RVV K+ED W + CGGTHL +T +L E I G+ RI
Sbjct: 705 RVV----KIED---------W---DVQACGGTHLPSTGLVGPIKILRTERIQDGVERI 746
>pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
pdb|2ZZE|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
Length = 752
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 166/716 (23%), Positives = 276/716 (38%), Gaps = 153/716 (21%)
Query: 36 KHNDLDDVGKDTYHHTFFEMLGNWSFGD-----YFKNEAIEWAWELLTKVYRLPADRLYA 90
+ D+D+VG H T FEM+ + +F Y+ +E +E A+E TK
Sbjct: 128 RFTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTK----------- 176
Query: 91 TYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTG 150
+ + P++ K+N W G G GP E+ Y
Sbjct: 177 -------ELXMXPED-----------------ITFKENPWAGG--GNAGPAFEVLY---- 206
Query: 151 NRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLK------------PLPAKHVDTGLGF 198
+E+ +VF+Q+ + + + P+ VDTG G
Sbjct: 207 -------------RGLEVATLVFMQYXXAPENAPQDQVVVIXGEKYIPMETXVVDTGYGL 253
Query: 199 ERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDA---------DKVDMAY 249
ERL + Q + YD V + + + G K+ +++ D D+ Y
Sbjct: 254 ERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDIEDLGDLRY 312
Query: 250 -------RV-------------------VADHIRTLSFAIADGSCPGNEGREYVLRRILR 283
RV +ADH + L+F +ADG P N Y+ R ++R
Sbjct: 313 LREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIR 372
Query: 284 RAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQXXXXXXXXXXXXXXSFGKTLLKG 343
+++R+ E+ + + +V + + + FPE + + +TL +G
Sbjct: 373 KSIRHLREL--GLEVPLSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRG 430
Query: 344 IEKFKKAAQDVQGK---VLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDE 400
+ ++ ++ K + + ++++G ++ +AE+ G+ V+I +M
Sbjct: 431 SDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIPDNFYSM-V 489
Query: 401 ARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEF 460
A+E R+ + K G ++D + L L +D F EF
Sbjct: 490 AKEAERTKEEK---GEELVDFELLKDLPDTRRLYYEDPFM-----------------XEF 529
Query: 461 IESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTE 520
V+ ++L +++FY E GGQ +D G + V NVQ G +IH E
Sbjct: 530 DAXVLRVIXDWVILDATAFYPEGGGQPYDTGVLIVNGREVXVTNVQXVGXVIIH---XVE 586
Query: 521 GAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFD 580
G F G V +D+ RR +HT TH+L AL VLG HV Q GS + + R D
Sbjct: 587 DPGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLD 646
Query: 581 FSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPD-PVRV 639
SH + E L IE + N + + V + A+ G R G V P +RV
Sbjct: 647 ISHYXRISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQGGVVPGREIRV 706
Query: 640 VAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRI 695
V I ++W + GGTHL +T +L E I G+ RI
Sbjct: 707 VXI-------------EDW---DVQAXGGTHLPSTGLVGPIXILRTERIQDGVERI 746
>pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase Lacking The C-Terminal Dimerization Domain In
Complex With Ala-Sa
Length = 739
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 178/729 (24%), Positives = 275/729 (37%), Gaps = 181/729 (24%)
Query: 27 TQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD-----YFKNEAIEWAWELLTKVY 81
+Q CIR +DLD VG+ H T FE + +F Y+KNE + + ELL ++
Sbjct: 123 SQPCIRL----DDLDSVGRTGRHLTLFEXXAHHAFNYPGKEIYWKNETVAYCTELLNELG 178
Query: 82 RLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPC 141
D +Y K+ W G G GPC
Sbjct: 179 VKKEDIVY------------------------------------KEEPWAGG--GNAGPC 200
Query: 142 SEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKH-------VDT 194
E ++V +E+ +VF +G ++ A++ VDT
Sbjct: 201 LE------------AIVGG-----LEVATLVFXNLEEHPEGDIEIKGARYRKXDNYIVDT 243
Query: 195 GLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATG----------------ARPYSGKVG 238
G G ER + + YD +F + D I + + +G G
Sbjct: 244 GYGLERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIXG 302
Query: 239 ADDADKVDMAYRVVAD------------------------HIRTLSFAIADGSCPGNEGR 274
++++ + VAD H R + F + DG P N G
Sbjct: 303 ELRGERLNQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFXLGDGLVPSNAGA 362
Query: 275 EYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMG---DVFPELKQXXXXXXXXXXX 331
Y+ R +RR++R E+ D + LV K++G DV Q
Sbjct: 363 GYLARLXIRRSLRLAEELELGLDLY--DLVEXHKKILGFEFDVPLSTVQEILELEKERYR 420
Query: 332 XXXSFGKTLL-KGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVD 390
S G L+ + +E+ KK +D D L+D++G P++L +A E+G V+
Sbjct: 421 TTVSKGTRLVERLVERKKKLEKD---------DLIELYDSHGIPVELAVGIAAEKGAEVE 471
Query: 391 IEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSV 450
D A L KR A K I Q+
Sbjct: 472 ----------------------------XPKDIYAELAKRHSKAEKVQEKKITLQNEYPA 503
Query: 451 IKAIY----TGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQ 506
+ +Y T EF V+ ++L S+FY E GGQ D G++ G F V +V
Sbjct: 504 TEKLYYDDPTLLEFEAEVIGVEGDFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDVL 563
Query: 507 IYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVD 566
G V+H+ +GA + VG +V +D D R +H+ TH+L ++L++VLG+HV
Sbjct: 564 EADGVVLHV---VKGA-KPEVGTKVKGVIDSDVRWRHXRHHSATHVLLYSLQKVLGNHVW 619
Query: 567 QKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLR 626
Q G+ K R D +H + E ++ IE + N +I A + + EA+ G R
Sbjct: 620 QAGARKEFSKARLDVTHFRRPSEEEIKEIEXLANREILANKPIKWEWXDRIEAERKFGFR 679
Query: 627 AVFGEVYPD-PVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSE 685
G V P +RVV +G V + CGGTH +T E +L
Sbjct: 680 LYQGGVPPGRKIRVVQVGDDV-----------------QACGGTHCRSTGEIGXLKILKV 722
Query: 686 EGIAKGIRR 694
E I G+ R
Sbjct: 723 ESIQDGVIR 731
>pdb|2E1B|A Chain A, Crystal Structure Of The Alax-M Trans-Editing Enzyme From
Pyrococcus Horikoshii
Length = 216
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 61/226 (26%), Positives = 96/226 (42%), Gaps = 44/226 (19%)
Query: 471 GIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEE 530
I+L + FY GGQ D G I G V + +Y ++ + + +F VG+E
Sbjct: 29 AILLDQTIFYPTGGGQPHDRGTING------VEVLDVYKDEEGNVWHVVKEPEKFKVGDE 82
Query: 531 VICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQ-KGSVVLPEKLRFDFSHGKPVDP 589
V K+D+D R + HT H+L L EVLG+ Q GS + EK R+D ++ P
Sbjct: 83 VELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAY-----P 137
Query: 590 EHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDL 649
E+L + + EQI + + + E GE V++ G +
Sbjct: 138 ENLNKYK----EQIISLFNKYVDEG---------------GE-----VKIWWEGDRRYTQ 173
Query: 650 LADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRI 695
+ D E CGGTH+ + +E L I +G +R+
Sbjct: 174 IRDFE--------VIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRL 211
>pdb|1TJE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase
pdb|1TKE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Serine
pdb|1TKG|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase Complexed With An Analog Of Seryladenylate
pdb|1TKY|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Seryl-3'-aminoadenosine
Length = 224
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 16/144 (11%)
Query: 547 HTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAE 606
H+C H+L A+++ L H V+ +D + + E + +E ++E +
Sbjct: 73 HSCAHLLGHAIKQ-LWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKN 131
Query: 607 LDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAE-- 664
DV K+ + EA+ R GE Y +V + + ++K L E
Sbjct: 132 YDVIKKKVSWHEARETFANR---GESY----KVSILDENIAH-----DDKPGLYFHEEYV 179
Query: 665 -LCGGTHLSNTREAEAFALLSEEG 687
+C G H+ N R F L+ G
Sbjct: 180 DMCRGPHVPNMRFCHHFKLMKTAG 203
>pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
With Its Cognate Trna
Length = 642
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 10/141 (7%)
Query: 547 HTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAE 606
H+C H+L A+++ L H V+ +D + + E + +E ++E +
Sbjct: 73 HSCAHLLGHAIKQ-LWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKN 131
Query: 607 LDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELC 666
DV K+ + EA+ R GE Y + I + L E ++C
Sbjct: 132 YDVIKKKVSWHEARETFANR---GESYKVSILDENIAHDDKPGLYFHEE------YVDMC 182
Query: 667 GGTHLSNTREAEAFALLSEEG 687
G H+ N R F L+ G
Sbjct: 183 RGPHVPNMRFCHHFKLMKTAG 203
>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
Length = 645
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 45/229 (19%)
Query: 547 HTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIE----SIVNEQ 602
H+ H++ A++ + G+ V V+ +DF + + + +IE IVNE
Sbjct: 75 HSTAHLMAHAIKRLYGN-VKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTMKQIVNEN 133
Query: 603 IKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSIS 662
+K E V S++ EAK E++ + K+E + A PE++ S
Sbjct: 134 MKIERKVVSRD----EAK----------ELFSND------EYKLELIDAIPEDENVTLYS 173
Query: 663 ----AELCGGTHLSNTREAEAFALLSEEGI-------AKGIRRITAVTTGLAYKAFEAAC 711
+LC G H+ +T + + F LLS G K ++RI T K +A
Sbjct: 174 QGDFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYG-TAFFDKKELKAHL 232
Query: 712 SL--EKEVDDASKIEGSLLEKTVASLKSKVDGAAIP--APKKADIRAKI 756
+ E++ D KI G LE S++ GA +P P A IR +I
Sbjct: 233 QMLEERKERDHRKI-GKELE---LFTNSQLVGAGLPLWLPNGATIRREI 277
>pdb|2UW2|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase
Subunit R2
Length = 332
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 18/90 (20%)
Query: 580 DFSHGKPVDPEHLRRI----------ESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF 629
D H + + PE I + IVNE + ++ FS+E + EA+C G +
Sbjct: 55 DIQHWESLKPEERYFISHVLAFFAASDGIVNENL---VERFSQEVQITEARCFYGFQIAM 111
Query: 630 GEVYPDPVRVVAIGRKVEDLLADPENKEWL 659
++ + ++ ++ + DP+ +E+L
Sbjct: 112 ENIHSEMYSLL-----IDTYIKDPKEREFL 136
>pdb|1L8L|A Chain A, Molecular Basis For The Local Confomational Rearrangement
Of Human Phosphoserine Phosphatase
pdb|1L8L|B Chain B, Molecular Basis For The Local Confomational Rearrangement
Of Human Phosphoserine Phosphatase
pdb|1L8O|A Chain A, Molecular Basis For The Local Conformational Rearrangement
Of Human Phosphoserine Phosphatase
pdb|1L8O|B Chain B, Molecular Basis For The Local Conformational Rearrangement
Of Human Phosphoserine Phosphatase
Length = 225
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 714 EKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEE 773
E+ +D+ +KI G +E V+ + + G A+P KA + ++AL+Q + Q+ +AE+
Sbjct: 28 EEGIDELAKICG--VEDAVSEMTRRAMGGAVPF--KAALTERLALIQPSREQVQRLIAEQ 83
>pdb|3OLJ|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|C Chain C, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|D Chain D, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
Length = 286
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 18/90 (20%)
Query: 580 DFSHGKPVDPEHLRRI----------ESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF 629
D H + + PE I + IVNE + ++ FS+E + EA+C G +
Sbjct: 48 DIQHWESLKPEERYFISHVLAFFAASDGIVNENL---VERFSQEVQITEARCFYGFQIAM 104
Query: 630 GEVYPDPVRVVAIGRKVEDLLADPENKEWL 659
++ + ++ ++ + DP+ +E+L
Sbjct: 105 ENIHSEMYSLL-----IDTYIKDPKEREFL 129
>pdb|2GZ6|A Chain A, Crystal Structure Of Anabaena Sp. Ch1
N-Acetyl-D-Glucosamine 2- Epimerase At 2.0 A
pdb|2GZ6|B Chain B, Crystal Structure Of Anabaena Sp. Ch1
N-Acetyl-D-Glucosamine 2- Epimerase At 2.0 A
Length = 388
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 541 KLIAPNHTCTHMLNFALREVLGDHVDQKGSV----VLPEKLRFDFSHGKPVDPEH 591
+ + P T ++L ++EV+GD +DQ+ + V P+ D G+ ++P H
Sbjct: 185 EWLLPQETLENVLAATVQEVMGDFLDQEQGLMYENVAPDGSHIDCFEGRLINPGH 239
>pdb|1NNL|A Chain A, Crystal Structure Of Human Phosphoserine Phosphatase
pdb|1NNL|B Chain B, Crystal Structure Of Human Phosphoserine Phosphatase
Length = 225
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 714 EKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEE 773
E+ +D+ +KI G +E V+ + + G A+P KA + ++AL+Q + Q+ +AE+
Sbjct: 28 EEGIDELAKICG--VEDAVSEMTRRAMGGAVPF--KAALTERLALIQPSREQVQRLIAEQ 83
>pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
pdb|1H0O|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
pdb|1W68|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Oxidizing Conditions. A Fully Occupied
Dinuclear Iron Cluster.
pdb|1W69|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Reducing Conditions. A Fully Occupied
Dinuclear Iron Cluster And Bound Acetate.
pdb|1XSM|A Chain A, Protein R2 Of Ribonucleotide Reductase From Mouse
Length = 390
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 598 IVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKE 657
IVNE + ++ FS+E + EA+C G + ++ + ++ ++ + DP+ +E
Sbjct: 141 IVNENL---VERFSQEVQVTEARCFYGFQIAMENIHSEMYSLL-----IDTYIKDPKERE 192
Query: 658 WL 659
+L
Sbjct: 193 YL 194
>pdb|3I2W|A Chain A, Crystal Structure Of EfcF-Bar Domain Of Drosophila
SyndapinPACSIN
pdb|3I2W|B Chain B, Crystal Structure Of EfcF-Bar Domain Of Drosophila
SyndapinPACSIN
Length = 290
Score = 29.3 bits (64), Expect = 9.3, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 45 KDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPAD 86
K+ YHHT ++ D FK WA +LL KV + AD
Sbjct: 103 KENYHHTLXQIKERKDLEDLFKKAQKPWA-KLLAKVEKAKAD 143
>pdb|4DJN|A Chain A, Crystal Structure Of A Ribonucleotide Reductase M2 B
(Rnrr2) From Homo Sapiens At 2.20 A Resolution
pdb|4DJN|B Chain B, Crystal Structure Of A Ribonucleotide Reductase M2 B
(Rnrr2) From Homo Sapiens At 2.20 A Resolution
Length = 311
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 598 IVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKE 657
IVNE + ++ FS+E + EA+C G + + V+ + ++ ++ + DP+ +E
Sbjct: 91 IVNENL---VERFSQEVQVPEARCFYGFQILIENVHSEXYSLL-----IDTYIRDPKKRE 142
Query: 658 WL 659
+L
Sbjct: 143 FL 144
>pdb|2F7K|A Chain A, Crystal Structure Of Human Pyridoxal Kinase
pdb|2F7K|B Chain B, Crystal Structure Of Human Pyridoxal Kinase
Length = 327
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 59/298 (19%), Positives = 112/298 (37%), Gaps = 60/298 (20%)
Query: 471 GIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEE 530
+ ++ + YA GQ+ + ++ L+ + N+ Y + T ++ +
Sbjct: 55 SVQFSNHTGYAHWKGQVLNSDELQELYEGLRLNNMNKYDYV---LTGYTRDKSFLAMVVD 111
Query: 531 VICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPE 590
++ ++ +L+ + VLGD D +GS+ +PE L PV E
Sbjct: 112 IVQELKQQNPRLV-----------YVCDPVLGDKWDGEGSMYVPEDLL-------PVYKE 153
Query: 591 HLRRIESIVN-EQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDL 649
+ + I+ Q +AEL K + EA + + G PD V + +
Sbjct: 154 KVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMG---PDTVVITSSD------ 204
Query: 650 LADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTG-------- 701
L P+ +L + L + R + E I IR++ AV G
Sbjct: 205 LPSPQGSNYLIV---------LGSQRRRNPAGSVVMERIRMDIRKVDAVFVGTGDLFAAM 255
Query: 702 -LAY-----KAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIR 753
LA+ + AC EK V + L++T+ K++ P+P + ++R
Sbjct: 256 LLAWTHKHPNNLKVAC--EKTVSTLHHV----LQRTIQCAKAQAGEGVRPSPMQLELR 307
>pdb|2VUX|A Chain A, Human Ribonucleotide Reductase, Subunit M2 B
pdb|2VUX|B Chain B, Human Ribonucleotide Reductase, Subunit M2 B
Length = 326
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 598 IVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKE 657
IVNE + ++ FS+E + EA+C G + + V+ + ++ ++ + DP+ +E
Sbjct: 106 IVNENL---VERFSQEVQVPEARCFYGFQILIENVHSEMYSLL-----IDTYIRDPKKRE 157
Query: 658 WL 659
+L
Sbjct: 158 FL 159
>pdb|3HF1|A Chain A, Crystal Structure Of Human P53r2
pdb|3HF1|B Chain B, Crystal Structure Of Human P53r2
Length = 351
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 598 IVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKE 657
IVNE + ++ FS+E + EA+C G + + V+ + ++ ++ + DP+ +E
Sbjct: 102 IVNENL---VERFSQEVQVPEARCFYGFQILIENVHSEMYSLL-----IDTYIRDPKKRE 153
Query: 658 WL 659
+L
Sbjct: 154 FL 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,994,561
Number of Sequences: 62578
Number of extensions: 1104236
Number of successful extensions: 2803
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2751
Number of HSP's gapped (non-prelim): 32
length of query: 904
length of database: 14,973,337
effective HSP length: 108
effective length of query: 796
effective length of database: 8,214,913
effective search space: 6539070748
effective search space used: 6539070748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)