Query 002583
Match_columns 904
No_of_seqs 347 out of 2111
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 02:56:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0188 Alanyl-tRNA synthetase 100.0 2E-234 4E-239 1951.8 66.4 847 1-903 43-895 (895)
2 PLN02900 alanyl-tRNA synthetas 100.0 1E-231 3E-236 2080.3 87.4 877 1-900 52-935 (936)
3 COG0013 AlaS Alanyl-tRNA synth 100.0 5E-227 1E-231 1981.5 79.8 822 1-903 47-879 (879)
4 TIGR00344 alaS alanine--tRNA l 100.0 1E-216 3E-221 1946.3 81.3 807 1-882 38-851 (851)
5 PRK00252 alaS alanyl-tRNA synt 100.0 2E-213 3E-218 1927.7 80.6 816 1-903 43-865 (865)
6 TIGR03683 A-tRNA_syn_arch alan 100.0 4E-191 8E-196 1726.3 74.4 752 1-899 97-901 (902)
7 PRK13902 alaS alanyl-tRNA synt 100.0 4E-190 8E-195 1717.2 75.6 754 1-902 100-899 (900)
8 PRK01584 alanyl-tRNA synthetas 100.0 6E-175 1E-179 1508.3 48.7 543 1-699 42-592 (594)
9 PF01411 tRNA-synt_2c: tRNA sy 100.0 4E-159 8E-164 1391.3 11.2 508 1-539 38-552 (552)
10 cd00673 AlaRS_core Alanyl-tRNA 100.0 2.6E-91 5.6E-96 717.4 15.1 191 1-208 40-232 (232)
11 COG2872 Predicted metal-depend 100.0 8.4E-45 1.8E-49 380.3 22.8 226 443-704 11-239 (241)
12 PLN02961 alanine-tRNA ligase 100.0 7.2E-44 1.6E-48 375.7 24.0 209 469-698 2-222 (223)
13 KOG2105 Predicted metal-depend 100.0 6.4E-40 1.4E-44 338.6 30.1 364 468-901 42-410 (415)
14 PLN02837 threonine-tRNA ligase 99.9 1.9E-23 4.2E-28 250.1 22.0 213 528-762 29-259 (614)
15 PRK12305 thrS threonyl-tRNA sy 99.9 1.7E-22 3.6E-27 241.8 21.4 199 542-762 6-218 (575)
16 PRK12444 threonyl-tRNA synthet 99.9 2.4E-22 5.2E-27 242.9 22.2 199 543-763 73-287 (639)
17 PRK00413 thrS threonyl-tRNA sy 99.9 1.8E-21 3.9E-26 235.8 22.1 215 526-762 52-282 (638)
18 PLN02908 threonyl-tRNA synthet 99.8 9.3E-20 2E-24 221.2 20.6 229 480-762 88-333 (686)
19 TIGR00418 thrS threonyl-tRNA s 99.8 1.1E-19 2.4E-24 217.1 19.1 197 546-763 1-213 (563)
20 COG0441 ThrS Threonyl-tRNA syn 99.7 1.9E-16 4.2E-21 185.6 15.8 196 542-762 26-232 (589)
21 PF07973 tRNA_SAD: Threonyl an 99.3 2.5E-12 5.4E-17 101.1 5.5 44 637-696 1-44 (44)
22 smart00863 tRNA_SAD Threonyl a 99.0 5.4E-10 1.2E-14 87.8 4.3 44 637-696 1-44 (44)
23 PRK14799 thrS threonyl-tRNA sy 98.7 3.3E-08 7.1E-13 117.2 10.0 100 660-763 74-181 (545)
24 KOG1637 Threonyl-tRNA syntheta 98.1 3E-06 6.5E-11 95.1 5.1 134 544-761 68-203 (560)
25 PF02272 DHHA1: DHHA1 domain; 97.8 2.6E-05 5.7E-10 66.9 4.8 65 824-897 3-68 (68)
26 cd00768 class_II_aaRS-like_cor 93.6 0.12 2.6E-06 53.4 5.8 122 22-201 76-211 (211)
27 TIGR00644 recJ single-stranded 87.4 8.4 0.00018 46.6 14.3 97 795-901 325-421 (539)
28 PRK00488 pheS phenylalanyl-tRN 85.3 1 2.2E-05 50.9 4.6 41 160-210 274-324 (339)
29 PF01411 tRNA-synt_2c: tRNA sy 84.5 0.19 4.1E-06 60.7 -1.7 95 102-222 97-200 (552)
30 PF02091 tRNA-synt_2e: Glycyl- 83.1 0.61 1.3E-05 50.1 1.6 154 28-214 15-175 (284)
31 COG0752 GlyQ Glycyl-tRNA synth 80.9 0.83 1.8E-05 48.5 1.6 154 26-214 19-181 (298)
32 PRK09348 glyQ glycyl-tRNA synt 79.9 4.2 9.2E-05 43.7 6.4 156 26-214 18-180 (283)
33 TIGR00388 glyQ glycyl-tRNA syn 77.7 5.4 0.00012 43.1 6.4 156 26-214 15-177 (293)
34 PTZ00450 macrophage migration 76.9 2.7 5.8E-05 40.2 3.6 24 70-93 78-101 (113)
35 cd00733 GlyRS_alpha_core Class 74.6 7.2 0.00016 41.9 6.3 155 27-214 15-176 (279)
36 KOG1759 Macrophage migration i 72.1 4 8.6E-05 38.8 3.3 23 72-94 79-101 (115)
37 PRK14908 glycyl-tRNA synthetas 71.3 10 0.00022 48.6 7.7 156 26-214 19-181 (1000)
38 cd00669 Asp_Lys_Asn_RS_core As 70.2 7.2 0.00016 42.9 5.5 28 190-217 237-264 (269)
39 KOG1501 Arginine N-methyltrans 68.2 3.4 7.4E-05 47.6 2.4 79 191-271 72-157 (636)
40 PF01422 zf-NF-X1: NF-X1 type 67.8 2.3 4.9E-05 27.9 0.5 9 135-143 12-20 (20)
41 PTZ00397 macrophage migration 62.3 7.9 0.00017 36.8 3.4 29 66-94 74-102 (116)
42 TIGR00470 sepS O-phosphoseryl- 59.2 15 0.00032 43.3 5.4 20 191-210 317-336 (533)
43 COG0016 PheS Phenylalanyl-tRNA 57.6 11 0.00023 42.8 3.8 120 22-210 193-321 (335)
44 PTZ00326 phenylalanyl-tRNA syn 55.7 22 0.00047 42.4 6.2 124 22-210 358-483 (494)
45 PF01187 MIF: Macrophage migra 54.0 11 0.00023 35.9 2.7 23 72-94 78-100 (114)
46 smart00438 ZnF_NFX Repressor o 49.0 7.4 0.00016 27.3 0.6 11 135-145 12-22 (26)
47 PRK11070 ssDNA exonuclease Rec 44.7 4.5E+02 0.0098 32.3 15.1 95 796-901 355-453 (575)
48 PLN02853 Probable phenylalanyl 42.7 21 0.00046 42.4 3.4 118 22-211 343-469 (492)
49 PF01409 tRNA-synt_2d: tRNA sy 41.2 13 0.00029 40.3 1.4 22 190-211 212-233 (247)
50 COG2024 Phenylalanyl-tRNA synt 41.1 39 0.00084 38.5 4.9 59 139-210 279-344 (536)
51 cd00777 AspRS_core Asp tRNA sy 33.3 22 0.00048 39.3 1.5 29 190-218 248-276 (280)
52 KOG2783 Phenylalanyl-tRNA synt 31.9 24 0.00053 40.2 1.5 38 188-228 293-330 (436)
53 TIGR00462 genX lysyl-tRNA synt 28.5 30 0.00065 38.7 1.6 51 21-82 73-124 (304)
54 cd00776 AsxRS_core Asx tRNA sy 28.0 31 0.00066 39.0 1.5 28 190-217 290-317 (322)
55 PF11867 DUF3387: Domain of un 27.1 3E+02 0.0065 31.2 9.3 168 187-366 34-222 (335)
56 PF00152 tRNA-synt_2: tRNA syn 25.9 37 0.0008 38.4 1.7 31 187-218 301-331 (335)
57 TIGR00457 asnS asparaginyl-tRN 24.6 38 0.00082 40.2 1.5 29 190-218 417-445 (453)
58 PF01361 Tautomerase: Tautomer 24.4 60 0.0013 26.7 2.3 29 66-94 16-44 (60)
59 PLN02850 aspartate-tRNA ligase 24.0 37 0.00081 41.1 1.3 29 190-218 494-522 (530)
60 COG1190 LysU Lysyl-tRNA synthe 23.3 30 0.00066 41.0 0.4 27 193-220 471-497 (502)
61 TIGR00458 aspS_arch aspartyl-t 23.2 41 0.00088 39.6 1.4 48 21-78 199-247 (428)
62 cd00775 LysRS_core Lys_tRNA sy 23.1 41 0.00089 38.1 1.4 48 20-78 75-123 (329)
63 PTZ00425 asparagine-tRNA ligas 22.9 41 0.00088 41.1 1.4 29 190-218 550-578 (586)
64 PRK06462 asparagine synthetase 22.8 43 0.00094 38.0 1.5 29 190-218 299-327 (335)
65 PRK03932 asnC asparaginyl-tRNA 22.8 43 0.00094 39.7 1.5 29 190-218 414-442 (450)
66 PLN02532 asparagine-tRNA synth 22.6 42 0.00092 41.3 1.4 29 190-218 597-625 (633)
67 PLN02603 asparaginyl-tRNA synt 22.3 44 0.00096 40.7 1.5 31 188-218 527-557 (565)
68 cd06008 NF-X1-zinc-finger Pres 22.1 36 0.00077 27.5 0.5 11 135-145 22-32 (49)
69 TIGR00499 lysS_bact lysyl-tRNA 22.1 45 0.00097 40.1 1.5 28 191-218 463-490 (496)
70 PTZ00401 aspartyl-tRNA synthet 22.1 45 0.00097 40.5 1.5 49 20-78 278-328 (550)
71 PLN02221 asparaginyl-tRNA synt 21.4 46 0.00099 40.6 1.4 46 21-76 326-372 (572)
72 cd00491 4Oxalocrotonate_Tautom 21.3 1.2E+02 0.0027 24.4 3.6 29 66-94 16-44 (58)
73 PF05008 V-SNARE: Vesicle tran 21.0 4.2E+02 0.0091 23.0 7.2 38 732-771 41-78 (79)
74 COG0017 AsnS Aspartyl/asparagi 20.8 59 0.0013 38.2 2.0 32 188-219 397-428 (435)
75 PLN02502 lysyl-tRNA synthetase 20.7 49 0.0011 40.2 1.5 27 191-217 520-546 (553)
76 PRK12445 lysyl-tRNA synthetase 20.3 51 0.0011 39.7 1.4 28 191-218 472-499 (505)
77 PRK00745 4-oxalocrotonate taut 20.1 98 0.0021 25.5 2.8 29 66-94 17-45 (62)
No 1
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-234 Score=1951.76 Aligned_cols=847 Identities=55% Similarity=0.904 Sum_probs=784.8
Q ss_pred CCCCcccccCCCCCCCcccccccccccccccccCCCCCCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHchhc
Q 002583 1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKV 80 (904)
Q Consensus 1 M~qfk~~flG~~~p~~~~~~~~r~~~~QkCiR~ggkhnDl~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~ 80 (904)
||||||+|||+ +++++||+|||||||+||||||||+||+|.|||||||||||||||||||+|||.|||||||++
T Consensus 43 MNQFKpifLgt------~a~lkRa~NsQKCIRAGGKHNDLdDVGkD~yHhTfFEMlGNWSFGdYfK~Eac~~AwelLt~v 116 (895)
T KOG0188|consen 43 MNQFKPIFLGT------MAKLKRAANSQKCIRAGGKHNDLDDVGKDFYHHTFFEMLGNWSFGDYFKEEACAWAWELLTFV 116 (895)
T ss_pred hhhcchhhhhc------hhhhHhhhhhhhHHhccCCcCChhHhchhccccCchhhcCCCCcchHHHHHHHHHHHHHHHHh
Confidence 99999999999 456899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhc-CCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCC
Q 002583 81 YRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVN 159 (904)
Q Consensus 81 ~~l~~~rl~vT~~~~~~~~~~~~D~e~~~iw~~~-~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~ 159 (904)
||||++|||||||+||+++|||+|.||++||+++ +|++||++++.+|||||||+||||||||||||||+||+++++|||
T Consensus 117 ygi~~dRLYVtYF~Gde~~Gl~~D~E~r~iW~~~Gvp~srILp~~~kDNFWEMGdtGPCGPCtEIHyDriG~r~a~~LVN 196 (895)
T KOG0188|consen 117 YGIPTDRLYVTYFGGDEKLGLEPDLECREIWNELGVPDSRILPFGMKDNFWEMGDTGPCGPCTEIHYDRIGGRDAVKLVN 196 (895)
T ss_pred hcCCCceEEEEEecCccccCCCCCcHHHHHHHHcCCChhhccCCccccchhhhcCCCCCCcchhhhhhhhcCcchHHHhc
Confidence 9999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeEEeeecccccccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCC
Q 002583 160 NDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGA 239 (904)
Q Consensus 160 ~~~~~~lEiwNlVFmq~~~~~~g~~~~Lp~~~iDTGmGlERl~~vlqg~~s~ydtd~f~~~~~~i~~~~~~~~y~g~~~~ 239 (904)
.|+|++|||||||||||||++||+|.|||+||||||||||||++|||+|.||||||+|+|||++|++.++++ |+|
T Consensus 197 ~ddp~v~EiWNlVFiq~NRe~dGsL~pLp~khIDTGMGfERLvsVlQnk~SNYDTDlFtPif~aiq~~~~~~-YtG---- 271 (895)
T KOG0188|consen 197 HDDPDVLEIWNIVFIQYNREADGSLKPLPKKHIDTGMGFERLVSVLQNKTSNYDTDLFTPIFEAIQEGTGAR-YTG---- 271 (895)
T ss_pred CCCcCceeeeeeeeeeeccccCCccccCcccccccccCHHHHHHHHhcccccccchhhHHHHHHHHHhcCCC-ccC----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996 998
Q ss_pred CcchhchhhhhhhhhhhhheeeeecCCCccCCCCcchHHHHHHHHHHHHHHhhhCCCcchhhhHHHHHHHHhCCCChhhH
Q 002583 240 DDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELK 319 (904)
Q Consensus 240 ~~~~~~~~~~rviaDH~R~~~f~i~DG~~Psn~grgyvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~ 319 (904)
++.+.+|+||||+|||+||+++|||||.+|+|+|||||||||||||+||++++||++.+||.+|||+|++.||++||||.
T Consensus 272 ~d~d~~D~AyRVvADH~RtlTvalsDG~~Pdn~GrgyvLRRILRRavrya~e~l~~~~g~~~~LVpvvv~~lgd~fPEl~ 351 (895)
T KOG0188|consen 272 EDADGIDTAYRVVADHARTLTVALSDGGVPDNTGRGYVLRRILRRAVRYAHEKLNAPPGFFSTLVPVVVETLGDAFPELK 351 (895)
T ss_pred CccccchhhHHHHHHHhhhhheeeecCCCCCCCCChhHHHHHHHHHHHHHHHHhCCCcchhhhhhHHHHHHHhhhchhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCChhhhhheeccCCCChHHHHHHHHHcCCccChhhHHHHH
Q 002583 320 QREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAM 398 (904)
Q Consensus 320 ~~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~-~~~~~g~~~f~Lydt~G~p~dl~~~~a~e~g~~vd~~~f~~~~ 398 (904)
.+++.|.+||..||+.|++||++|.++|++.++.++ +++|||++||.||||||||+|||++||+|+|++||+++|+++.
T Consensus 352 ~~~~~v~diineEE~~F~ktl~rg~~~f~r~~~~~~~s~tipGd~~w~LydTyGfPvdlt~lmAee~gl~iD~~~fE~ar 431 (895)
T KOG0188|consen 352 RDPQHVIDIINEEEAQFLKTLDRGRKLFDRVARELGSSKTIPGDVAWRLYDTYGFPVDLTELMAEEKGLKIDETGFEAAR 431 (895)
T ss_pred cCHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCchHHHHHHHhhcCCcHHHHHHHHHHhCCccCchhHHHHH
Confidence 999999999999999999999999999999999887 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcccccCcccccccceEEEEEEeCCeeeeeecCCCeEEEEeecee
Q 002583 399 DEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSS 478 (904)
Q Consensus 399 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~~~~y~~~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~ 478 (904)
++.++.|+++.+.+.+ +.++. +.+| +|+|+|++||+-...++++|++++.++.+++++..|+.++||||+|+
T Consensus 432 ~~A~~~Sk~~~~~~~~--i~ldv--l~el----~p~TdDs~KY~~~~~~~~~il~l~~e~~~v~~~~~g~~~givldktn 503 (895)
T KOG0188|consen 432 QEAQEKSKGAGGGKLS--IDLDV--LSEL----VPPTDDSFKYNEFGVCKTRILALYREDQFVESIPKGQECGIVLDKTN 503 (895)
T ss_pred HHHHHHHhccCCCCCc--ccHHH--HHhh----CCCCCCccccccCccchhhhhhhhcCCceeeecCCCceEEEEeecce
Confidence 9999999876443322 33333 3333 79999999995367899999999999999999999999999999999
Q ss_pred EEEccCCeeceeeEEEccCe---eEEEEEEEEECCEEEEEEEeecCCcccCCCCEEEEEechhhhhhhhhhhhHHHHHHH
Q 002583 479 FYAEQGGQIFDEGFIEGLFG---SFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNF 555 (904)
Q Consensus 479 FYpegGGQ~~D~G~i~~~~~---~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTA~HLL~~ 555 (904)
||+|+|||.+|+|.|...+. .+.|..++. +|+|+|++.+ . +.+++|++|.+++|.+||+.+|++|||||||++
T Consensus 504 FYaEqGGQ~~D~G~lv~~~~~~~~fnV~~~~~-gg~vvh~g~l-~--~~l~vgdqv~~~~De~rR~~im~nHTaTHlLN~ 579 (895)
T KOG0188|consen 504 FYAEQGGQIYDTGKLVIDGDEDFVFNVKRVQV-GGYVVHIGVL-E--GDLSVGDQVELHVDEERRQLIMRNHTATHLLNF 579 (895)
T ss_pred eehhcCCcccccceEEEecCccceeehhhccc-CCEEEEEeee-c--cccccchhHHHHhhHHHHHHHhhcchHHHHHHH
Confidence 99999999999999986543 355555565 8999999986 3 789999999999999999999999999999999
Q ss_pred HHHHHhCCceeeecccccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHhhhcCchhhcCCcCCC
Q 002583 556 ALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPD 635 (904)
Q Consensus 556 Al~~vlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eeA~~~~~~~~~~~e~y~d 635 (904)
|||+++ ..+.|+||++.||++||||++..++|.++|+++|..+|++|.++.||..+.+|+++|++++|+|+.|+|.||+
T Consensus 580 aLr~~l-~~t~QkGSlV~pdklRfDf~~k~~lt~eql~~vE~~~ne~I~~~~~V~~~e~~l~~ak~i~glr~v~~E~YPd 658 (895)
T KOG0188|consen 580 ALRQVL-KGTDQKGSLVAPDKLRFDFSTKGALTKEQLKKVEDKINEFIQKNAPVYAKELPLAEAKKIPGLRAVFDEVYPD 658 (895)
T ss_pred HHHHhc-ccccccccccChhHeeeecccCCCCCHHHHHHHHHHHHHHHhcCCceEEEecCHHHHhcCCCcccccCCccCC
Confidence 999999 5678999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeecCCCceEEEEEechhHHHHHHHHHHHHH
Q 002583 636 PVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEK 715 (904)
Q Consensus 636 ~VRvV~I~~~~~~~l~~~~~~~~~~~~~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~A~~~~~~~~~~~~ 715 (904)
+||||+++. +..+++|+|||||+.|||+||.|.|++++++++|+|||.+|||+.|.+.++..+.
T Consensus 659 pVRVVsvg~-------------~~~~svE~CgGTH~~~t~~i~~fvI~se~~iakgirRivavTG~eA~~a~~~a~~--- 722 (895)
T KOG0188|consen 659 PVRVVSVGA-------------GQLTSVEFCGGTHLTNTSHIGDFVIVSEEGIAKGIRRIVAVTGKEAQEALRLAED--- 722 (895)
T ss_pred ceEEEEecc-------------ccccceeecCCcccccccccceEEEechhhhhhceeEEEEeccHHHHHHHHHHHH---
Confidence 999999984 2357999999999999999999999999999999999999999999998876653
Q ss_pred HHHHHhccccchhHHHHHHHHhhcCCCccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 002583 716 EVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKP 795 (904)
Q Consensus 716 ~l~~~~~~~~~~i~k~v~~l~~~~~~~~i~~~~~~~l~~~i~~l~~~~~~l~ke~~~~~~~~a~~~~~~~~~~~~~~~~~ 795 (904)
....+.+.+ ..+.+++..+.+.+..+.+|++.+.+++++++++++.++++.|.+++..++.....++++.+. ..+.+
T Consensus 723 ~~~~~~~~~-~~~~kei~~l~~~~~~a~iP~~~k~~~~~~~k~~~K~~~d~~ra~~~~~qk~~l~~~~~~~~~--~~~~~ 799 (895)
T KOG0188|consen 723 LDKDLRKTD-KALEKEIQELGENLDHAVIPYWQKDEIRELLKKLQKRMDDLSRALKAAVQKEVLEEAKQLKES--NPNQP 799 (895)
T ss_pred HHhhhcccc-hhhHHHHHHHHHhhccccchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCC
Confidence 122222333 567788999999998899999999999999999999999999999888888888777777653 56788
Q ss_pred EEEEEeccCCCHHHHHHHHHHHHh-ccCCcEEEEEEeCCCCeEEEEEecCCcccccccccHHHHHHHHhhhcCCCCCCCC
Q 002583 796 FCISRVEVGLDAAAVREAVLKVIE-QKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGK 874 (904)
Q Consensus 796 ~iv~~~~~~~d~~~L~~~~~~l~~-~~~~~v~ll~~~~~~~k~~~~~~v~~~~~~~~~~~a~~~~k~v~~~~gGkGG~Gk 874 (904)
++|..++.. ..+++ .|+.++++|+ +++.+|+.+.|.|++.+ ..++++|.+|++.++..+||||| ||
T Consensus 800 ~~v~~~~~~----------~~~k~~~~~~~i~lls-d~~~gkv~~~c~V~~~a-~~~gl~a~~w~q~v~~~~ggk~g-gK 866 (895)
T KOG0188|consen 800 LLVHYIESS----------KLLKKQAPDKSIMLLS-DDESGKVTCLCQVPQNA-ANKGLKASEWVQSVSGTMGGKGG-GK 866 (895)
T ss_pred EEEEEecch----------HHHHhcCCCCeeEEec-cCCCCeEEEEEeecHHH-hhccCCHHHHHHHHHHhhCCccC-Cc
Confidence 999888632 34455 5888999998 66678999999999998 88899999999999999999999 99
Q ss_pred CCCcccccCCcCCHHHHHHHHHHHHHhhh
Q 002583 875 GGLASGQGTDAAQVTPAMDLAAEFAAMKL 903 (904)
Q Consensus 875 ~~~AQG~g~~~~~l~~al~~a~~~~~~~l 903 (904)
+..|||.|.++.+|++|++.|.++++.+|
T Consensus 867 ~~~~q~~g~~~~~l~~av~~a~~~a~~~L 895 (895)
T KOG0188|consen 867 GVLAQATGNNVGCLDEAVSLATEFALLKL 895 (895)
T ss_pred cchhhhhCCcHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999987654
No 2
>PLN02900 alanyl-tRNA synthetase
Probab=100.00 E-value=1.2e-231 Score=2080.26 Aligned_cols=877 Identities=69% Similarity=1.065 Sum_probs=801.3
Q ss_pred CCCCcccccCCCCCCCcccccccccccccccccCCCCCCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHchhc
Q 002583 1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKV 80 (904)
Q Consensus 1 M~qfk~~flG~~~p~~~~~~~~r~~~~QkCiR~ggkhnDl~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~ 80 (904)
||||||||||..+|+++++||+|+||||||||+|||||||||||+|+|||||||||||||||||||+|||+|||||||++
T Consensus 52 m~~Fk~~f~G~~~p~~~~~~~~R~~~~QkCiR~gGKHnDlenVG~t~rHhTfFEMlGnfSfgdYfK~eaI~~awe~lT~~ 131 (936)
T PLN02900 52 MNQFKPIFLGTADPNTPLRKLPRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTKV 131 (936)
T ss_pred hhhhhhhhcCCCCCCCCCCCCCceeeecccccCCCCCCCHhhccCCCCchHHHHhhhccchhhhhHHHHHHHHHHHHHHh
Confidence 99999999999999888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCC
Q 002583 81 YRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNN 160 (904)
Q Consensus 81 ~~l~~~rl~vT~~~~~~~~~~~~D~e~~~iw~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~ 160 (904)
|||||+|||||||++|+.+ |||+||++||+++||++||+++|.+||||+||+||||||||||||||++++++.++++.
T Consensus 132 l~i~~~~l~vTv~~~D~~~--~~d~Ea~~iW~~~~~~~rI~~~~~~dNfW~~G~tGpcGPcsEi~yD~g~~~~~~~~~~~ 209 (936)
T PLN02900 132 YGLPADRLYATYFGGDEKQ--APDDEARAIWLDYLPEERVLPFGCKDNFWEMGDTGPCGPCSEIHYDRIGERDAADLVNN 209 (936)
T ss_pred cCCCHHHEEEEEeCCCCCc--CCCHHHHHHHHHhCCHHHeecCCcccCCccCCCCcCCCCCeEEEEecCCccCccccCCC
Confidence 9999999999999999874 99999999999999999999999999999999999999999999999988777666788
Q ss_pred CCCCeeEEeeecccccccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCC
Q 002583 161 DDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGAD 240 (904)
Q Consensus 161 ~~~~~lEiwNlVFmq~~~~~~g~~~~Lp~~~iDTGmGlERl~~vlqg~~s~ydtd~f~~~~~~i~~~~~~~~y~g~~~~~ 240 (904)
+++|||||||||||||||+.||+|+|||+||||||||||||+|||||++||||||+|.|||++|++++|+++|+|....+
T Consensus 210 ~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~~snydtDlf~pii~~i~~~~~~~~~~~~~y~~ 289 (936)
T PLN02900 210 DDPRFIEIWNLVFIQFNREADGSLKPLPAKHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAE 289 (936)
T ss_pred CCCCEEEEeeeeeeeeeecCCCceeeCCCCeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988898865433
Q ss_pred cchhchhhhhhhhhhhhheeeeecCCCccCCCCcchHHHHHHHHHHHHHHhhhCCCcchhhhHHHHHHHHhCCCChhhHh
Q 002583 241 DADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQ 320 (904)
Q Consensus 241 ~~~~~~~~~rviaDH~R~~~f~i~DG~~Psn~grgyvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~~ 320 (904)
+.+..++||||||||+||++|||+||++|||+|||||||||||||+|+|+++||++.|||++||+.|++.|++.||||.+
T Consensus 290 ~~~~~~~a~rviaDH~R~~~f~i~DGv~PsN~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~ 369 (936)
T PLN02900 290 DDDRVDMAYRVVADHIRTLSFAIADGVVPSNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVELSGDVFPEVKK 369 (936)
T ss_pred cccccceeeeeehhhHHHHHHHHhcCCccCCCCccHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH
Confidence 32456789999999999999999999999999999999999999999996448999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCChhhhhheeccCCCChHHHHHHHHHcCCccChhhHHHH
Q 002583 321 REAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNA 397 (904)
Q Consensus 321 ~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~---~~~~~g~~~f~Lydt~G~p~dl~~~~a~e~g~~vd~~~f~~~ 397 (904)
+++.|++||..||++|.+||++|+++|++++++++ ++.|||++||+||||||||+|||++||+|+|++||+++|+++
T Consensus 370 ~~~~I~~ii~~EE~~F~~tl~~G~~~l~~~i~~~~~~~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~F~~~ 449 (936)
T PLN02900 370 NEKRITEIIAEEELSFGKTLEKGIEKFKKALAAAKANGGPVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAA 449 (936)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCHHHHHHHHhccCCCHHHHHHHHHHcCCeecHHHHHHH
Confidence 99999999999999999999999999999998765 368999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcccccCcccccc-cceEEEEEEeCCeeeeeecCCCeEEEEeec
Q 002583 398 MDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQD-HKSVIKAIYTGSEFIESVVPGNEVGIVLAS 476 (904)
Q Consensus 398 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~~~~y~~~~~-~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~ 476 (904)
|++||++||++++.........+...+..+.+..++++++|.||+ ..+ ++|+|++++.+++.++++..++.++|+||+
T Consensus 450 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~f~gY~-~~~~~~~~v~~i~~~~~~v~~~~~g~~~~vvLd~ 528 (936)
T PLN02900 450 MEEARERSRAAHLKAGGGAIELAAEATSWLQKQGVAATDDFLKYD-WLSDHEAVVKAILTGGGFVESVSEGDEVGIVLDK 528 (936)
T ss_pred HHHHHHHHHhhhhccccccccccHHHHHHHHhccCCCCCcccccc-cCCccceEEEEEEECCceeeeccCCCeEEEEEeC
Confidence 999999998765322110112222223444332234445699999 455 899999999988889999888889999999
Q ss_pred eeEEEccCCeeceeeEEEccCe-eEEEEEEEEECCEEEEEEEeecCCcccCCCCEEEEEechhhhhhhhhhhhHHHHHHH
Q 002583 477 SSFYAEQGGQIFDEGFIEGLFG-SFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNF 555 (904)
Q Consensus 477 T~FYpegGGQ~~D~G~i~~~~~-~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTA~HLL~~ 555 (904)
|+|||||||||+|+|+|..+++ .++|.+|++.+|.++|.+.+.. +++.+|++|.+.|||+||+++|++|||+|||++
T Consensus 529 T~FYpEgGGQp~D~G~I~~~~~~~~~V~dv~k~~g~i~H~~~~~~--g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~a 606 (936)
T PLN02900 529 TSFYAESGGQIGDTGVLEGSGGAVVEVSDVQKAGGFVLHIGTVTE--GSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNS 606 (936)
T ss_pred CCCCCCCCCCCCCEEEEecCCCCEEEEEEEEEECCEEEEEEEecc--CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987666 7999999999999999987654 678999999999999999999999999999999
Q ss_pred HHHHHhCCceeeecccccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHhhhcCchhhcCCcCCC
Q 002583 556 ALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPD 635 (904)
Q Consensus 556 Al~~vlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eeA~~~~~~~~~~~e~y~d 635 (904)
||+++||.++.|.|++++++++||||+++.++|++++.+||++||++|++|+||++.+++++||++..|++++|+++|++
T Consensus 607 ALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~~~~f~e~y~~ 686 (936)
T PLN02900 607 ALKEVLGDHVDQKGSLVAFEKLRFDFSHGKPMTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPD 686 (936)
T ss_pred HHHHHcCCcEEeccccccCCeEEEEeeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHhhccChHhhcCCCCCC
Confidence 99999999999999999999999999998999999999999999999999999999999999999988999999999999
Q ss_pred CeEEEEecCcccccccCCCCccccce-eeeeccCCCcccccccccEEEEeeeecCCCceEEEEEechhHHHHHHHHHHHH
Q 002583 636 PVRVVAIGRKVEDLLADPENKEWLSI-SAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLE 714 (904)
Q Consensus 636 ~VRvV~I~~~~~~~l~~~~~~~~~~~-~~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~A~~~~~~~~~~~ 714 (904)
.||||+|+ ++ |.++||||||+|||+||.|+|++++++++|++||+|+||.+|++++++....+
T Consensus 687 ~VRVV~Ig----------------~~~d~elCGGTHV~nTgeIG~fkIls~~~~~~G~rRIe~v~G~~A~~~~~~~~~~l 750 (936)
T PLN02900 687 PVRVVSVG----------------GVYSMELCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLE 750 (936)
T ss_pred cEEEEEEC----------------CccceeCCCCCcCCccccCceEEEEEEeeecCCeEEEEEEEcHHHHHHHHHHHHHH
Confidence 99999998 56 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccchhHHHHHHHHhhcCCCccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 002583 715 KEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGK 794 (904)
Q Consensus 715 ~~l~~~~~~~~~~i~k~v~~l~~~~~~~~i~~~~~~~l~~~i~~l~~~~~~l~ke~~~~~~~~a~~~~~~~~~~~~~~~~ 794 (904)
++++.+++++.+++.+.+..|..++...++|+.++.++.++++++++++++++|++++++.+++...++.+.+++...+.
T Consensus 751 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~v~~l~~e~k~l~k~~~~l~~~la~~~~~~l~~~~~~~~~ 830 (936)
T PLN02900 751 RELDSALKVEGSDLEKKVASLKSRVDAAVIPAAKKEEIRARVSALQKELRAAQKEAAALRAKLAVAKATELASKALSAGK 830 (936)
T ss_pred HHHHHHhCCCcccchhhhhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 99999999977888899999999998889999999999999999999999999999999999998888888766543344
Q ss_pred cEEEEEeccCCCHHHHHHHHHHHHhcc-CCcEEEEEEeCCCCeEEEEEecCCcccccccccHHHHHHHHhhhcCCCCCCC
Q 002583 795 PFCISRVEVGLDAAAVREAVLKVIEQK-GMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKG 873 (904)
Q Consensus 795 ~~iv~~~~~~~d~~~L~~~~~~l~~~~-~~~v~ll~~~~~~~k~~~~~~v~~~~~~~~~~~a~~~~k~v~~~~gGkGG~G 873 (904)
.+++..++.+.+++.|+.+++.++++. ...++++++...++++.+++++++++ ..++++|++|+|++++.+||||| |
T Consensus 831 ~~~v~~~~~~~d~~~Lr~la~~l~~~~~~~~vvl~~~~~~~~k~~~~~~~~~~~-~~~~~~A~~lvk~~~~~~gGkGG-G 908 (936)
T PLN02900 831 SVLVARLDVGVDAAALKEAAEKVIAKLGDPAAVVLSSDEEKGKVSLVAAVPPGV-VKKGLKAGKWLGAIAKLCGGGGG-G 908 (936)
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHhhcCCceEEEEEecCCCCeEEEEEEEChHH-hhcCCCHHHHHHHHHHhcCCCCC-C
Confidence 677777754679999999999998854 43566665432457888888888776 55579999999999999999999 9
Q ss_pred CCCCcccccCCcCCHHHHHHHHHHHHH
Q 002583 874 KGGLASGQGTDAAQVTPAMDLAAEFAA 900 (904)
Q Consensus 874 k~~~AQG~g~~~~~l~~al~~a~~~~~ 900 (904)
+|+||||+|++++++++|++.|++++.
T Consensus 909 ~~~~AQggg~~~~~l~~al~~~~~~~~ 935 (936)
T PLN02900 909 KPGFAQGQGRDAEKLDAALEKARAFAV 935 (936)
T ss_pred cHHHeeeCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999875
No 3
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-227 Score=1981.52 Aligned_cols=822 Identities=43% Similarity=0.739 Sum_probs=744.5
Q ss_pred CCCCcccccCCCCCCCcccccccccccccccccCCCCCCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHchhc
Q 002583 1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKV 80 (904)
Q Consensus 1 M~qfk~~flG~~~p~~~~~~~~r~~~~QkCiR~ggkhnDl~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~ 80 (904)
|+||||||+|..+|++ .|+||||||||+ |||||||+|+|||||||||||||||||||+|||+|||||||++
T Consensus 47 m~~FK~~f~g~v~p~~-----~r~~~sQkcIR~----NDieNVG~T~RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~ 117 (879)
T COG0013 47 MVQFKPYFTGGVTPPA-----NRAVTSQKCIRT----NDIDNVGYTARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKV 117 (879)
T ss_pred cccchhhhcCCCCCCC-----CCeecccccccc----CchhhcCccccchhHHHhhhcCchhHHHHHHHHHHHHHHHHhh
Confidence 9999999999976664 499999999999 9999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhc--CCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCC--CCC
Q 002583 81 YRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRD--AAS 156 (904)
Q Consensus 81 ~~l~~~rl~vT~~~~~~~~~~~~D~e~~~iw~~~--~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~--~~~ 156 (904)
|||||||||||||+ .|+||+.+|+++ +|++||++++.+||||+||+ ||||||||||||||+..+ ...
T Consensus 118 lgl~~ekL~vtvy~--------~Ddea~~~W~~~~gip~~rIir~~~~dNfW~~G~-GPcGPcsEI~yD~G~~~~~~~~~ 188 (879)
T COG0013 118 LGLPKEKLYVTVYE--------DDDEAYNEWEKIIGIPPERIIRIGASDNFWEMGD-GPCGPCSEIFYDRGEEIGGGPPG 188 (879)
T ss_pred cCCCHHHEEEEEec--------CchHHHHHHHhhcCCCHHHeeecCcCCCCCCCCC-cCCCCceEEEEcCCcccCCCCCC
Confidence 99999999999997 589999999988 99999999999999999999 999999999999976433 345
Q ss_pred CCCCCCCCeeEEeeecccccccC-CCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCC
Q 002583 157 LVNNDDPTCIEIWNIVFIQFNRE-SDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSG 235 (904)
Q Consensus 157 ~~~~~~~~~lEiwNlVFmq~~~~-~~g~~~~Lp~~~iDTGmGlERl~~vlqg~~s~ydtd~f~~~~~~i~~~~~~~~y~g 235 (904)
.+++|++|||||||||||||||+ .+|+|.|||+||||||||||||+|||||+|||||||+|.|||+.+++++|. .|.
T Consensus 189 ~~~~d~dR~lEiwNLVFmQfnr~~~~g~~~~Lp~k~IDTGmGLERi~~vlQ~~~tnyd~dlf~~ii~~~e~~~g~-~~~- 266 (879)
T COG0013 189 SPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNIDTGMGLERIAAVLQGVPTNYDTDLFRPIIKAIEKLTGK-KYG- 266 (879)
T ss_pred CcCCCCCceEEEeeeeehhhccCCCCCCcccCCCCCcccCccHHHHHHHHcCCCcchhhhhhHHHHHHHHHHhCC-cCC-
Confidence 67889999999999999999999 699999999999999999999999999999999999999999999999987 453
Q ss_pred CCCCCcchhchhhhhhhhhhhhheeeeecCCCccCCCCcchHHHHHHHHHHHHHHhhhCCCcchhhhHHHHHHHHhCCCC
Q 002583 236 KVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVF 315 (904)
Q Consensus 236 ~~~~~~~~~~~~~~rviaDH~R~~~f~i~DG~~Psn~grgyvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~y 315 (904)
.+.+.++++|||||||+||++|||+|||+|||+|||||||||||||+||+ +.||++.|||++|||++++.|+++|
T Consensus 267 ----~~~~~~~~s~rVIADH~Rs~~f~iaDGv~PSNegrGYvlRriiRRa~R~~-~~LG~~~~fl~~LV~~~~~~m~~~y 341 (879)
T COG0013 267 ----EDEEDPDVSFRVIADHIRSLAFMIADGVLPSNEGRGYVLRRIIRRALRHG-KLLGIKEPFLYKLVDTVIDEMGDAY 341 (879)
T ss_pred ----ccccccceeEEEehhHHHHHHHHHhCCCCcCCCCccHHHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHhhhc
Confidence 12233477999999999999999999999999999999999999999999 5799999999999999999999999
Q ss_pred hhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCChhhhhheeccCCCChHHHHHHHHHcCCccChhhH
Q 002583 316 PELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQG-KVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGF 394 (904)
Q Consensus 316 pel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~~-~~~~g~~~f~Lydt~G~p~dl~~~~a~e~g~~vd~~~f 394 (904)
|||.++++.|+++|+.||++|.+||++|+++|+++++++++ ++|||++||+||||||||+|||++||+|+|++||+++|
T Consensus 342 pel~~~~~~I~~vl~~EEe~F~~TL~~G~~l~~~~~~~~~~~~~l~ge~afkLYDTyGfP~eLt~eia~e~g~~VD~~~f 421 (879)
T COG0013 342 PELKEKEDFIKEVLKLEEERFAKTLERGLKLLEKELAKLKKSKTLDGEDAFKLYDTYGFPVELTEEIAEERGLKVDEPGF 421 (879)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccChHHheeehhcCCCCHHHHHHHHHHcCCeeccccH
Confidence 99999999999999999999999999999999999998874 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcccccCcccccccceEEEEEEeCCeeeeeecCCCeEEEEe
Q 002583 395 NNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVL 474 (904)
Q Consensus 395 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~~~~y~~~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvL 474 (904)
+.+|++||++||+.+.+.. .........+.. ..++|+ |.+|+ ..+.+++|+.++.++..++++..++..+|||
T Consensus 422 ~~~m~~qr~~ar~~~~~~~----~~~~~~~~~~~~-~~~~te-f~gY~-~~~~~~~i~~l~~~~~~v~~~~~g~~~~vVl 494 (879)
T COG0013 422 EYAMEAQRERARASAGSGE----GAKESEDLELID-KLPETE-FLGYD-DLEMEFKVLVLFVDGKEVSELNEGQEVYVVL 494 (879)
T ss_pred HHHHHHHHHHhhhcccccc----ccchhhhhhhhc-cCCCce-eeecc-cccceEEEEEEEecCcccccccCCceEEEEE
Confidence 9999999999997541111 001111111111 235554 99999 7888899999998876688888999999999
Q ss_pred eceeEEEccCCeeceeeEEEcc-CeeEEEEEEEEEC-CEEEEEEEeecCCcccCCCCEEEEEechhhhhhhhhhhhHHHH
Q 002583 475 ASSSFYAEQGGQIFDEGFIEGL-FGSFYVRNVQIYG-GFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHM 552 (904)
Q Consensus 475 D~T~FYpegGGQ~~D~G~i~~~-~~~~~V~dv~~~~-g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTA~HL 552 (904)
|+||||||||||++|+|+|..+ +..+.|.|||+.+ +.++|.+.... |.+++|+.|.+.|||+||..+|+|||||||
T Consensus 495 d~TpFYaEsGGQ~~D~G~i~~~~~~~~~V~dvqK~~~~~~vH~~~~~~--G~l~~gd~V~~~vD~~rR~~~~~nHTATHL 572 (879)
T COG0013 495 DQTPFYAESGGQVGDTGYIFGDGGGRFEVTDVQKVGNGVIVHKGKVES--GELKVGDEVTAEVDEERRRRLMRNHTATHL 572 (879)
T ss_pred ecCCccCCCCCccCceEEEEecCCcEEEEEEEEEcCCceEEEEEeecc--CccCCCCEEEEEECHHHHHHHHhhChHHHH
Confidence 9999999999999999999887 4789999999997 89999999876 899999999999999999999999999999
Q ss_pred HHHHHHHHhCCceeeecccccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHhhhcCchhhcCCc
Q 002583 553 LNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEV 632 (904)
Q Consensus 553 L~~Al~~vlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eeA~~~~~~~~~~~e~ 632 (904)
|++|||+++|.|++|+||.++++++||||+|++++|.|+|++||+.+|++|++|+||.+.+|++++|++. |++++||++
T Consensus 573 Lh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~it~Eel~~IE~~vNe~I~~n~~V~~~~m~~~eAk~~-Ga~alfGek 651 (879)
T COG0013 573 LHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAEELKEIERLVNEIIRENLPVKTEEMDLDEAKAK-GAMALFGEK 651 (879)
T ss_pred HHHHHHHHhCccceecCcccCCCeeEEeecCCCCCCHHHHHHHHHHHHHHHHcCCceeEEEccHHHHHHh-ChHhhcCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred CCCCeEEEEecCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeecCCCceEEEEEechhHHHHHHHHHH
Q 002583 633 YPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACS 712 (904)
Q Consensus 633 y~d~VRvV~I~~~~~~~l~~~~~~~~~~~~~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~A~~~~~~~~~ 712 (904)
|++.||||+|+ ++|+|+||||||.|||+||.|+|++++++++|+|||+|+||..|+++++..+.
T Consensus 652 Y~~~VRVV~ig----------------~~SvElCGGTHv~~Tg~IG~fkI~~e~~i~aGVrRIeavtG~~a~~~~~~~~~ 715 (879)
T COG0013 652 YGDEVRVVEIG----------------DFSVELCGGTHVSNTGDIGLFKIISEEGIAAGVRRIEAVTGEAALEYLQEQED 715 (879)
T ss_pred CCCeEEEEEEC----------------CceeeccCCcccCCccceeeEEEEEecccccCeEEEEEEcCHHHHHHHHHHHH
Confidence 99999999999 58999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHhccccchhHHHHHHHHhhcCCCccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 002583 713 LEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAA--- 789 (904)
Q Consensus 713 ~~~~l~~~~~~~~~~i~k~v~~l~~~~~~~~i~~~~~~~l~~~i~~l~~~~~~l~ke~~~~~~~~a~~~~~~~~~~~--- 789 (904)
.+++++.+++.+ .++..+++.++.++++++|++++++.+++......+....
T Consensus 716 ~l~~~a~~lk~~-------------------------~~~~~kv~~l~~~~k~lekel~~lk~~~~~~~~~~~~~~~~~~ 770 (879)
T COG0013 716 LLKEIASLLKVP-------------------------PELLPKVERLLEELKELEKELERLKKKLAAAELADLLSNAKAE 770 (879)
T ss_pred HHHHHHHHhCCC-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccce
Confidence 888888776652 2445588899999999999999998877766655544332
Q ss_pred hcCCCcEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEEeCCCCeEEEEEecCCcccccccccHHHHHHHHhhhcCCC
Q 002583 790 ASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGR 869 (904)
Q Consensus 790 ~~~~~~~iv~~~~~~~d~~~L~~~~~~l~~~~~~~v~ll~~~~~~~k~~~~~~v~~~~~~~~~~~a~~~~k~v~~~~gGk 869 (904)
..+|.++++..++ +.|++.|+.+++.++++.+..++++.+.. .+|+.+++++++++ .. .++|++|+++++..+|||
T Consensus 771 ~i~g~~~~~~~~~-~~d~~~Lr~~a~~lk~k~~~~vivl~~~~-~~Kv~~~~~v~~~~-~~-~~~a~~lvk~la~~~gG~ 846 (879)
T COG0013 771 EIGGVKVLAKEVD-GADMKELREIADDLKKKLGSAVIVLASVA-DGKVSLVVAVSKDL-TD-KVKAGELVKELAAIVGGK 846 (879)
T ss_pred eeCCEEEEEEEec-CCCHHHHHHHHHHHHhhcCCcEEEEEEec-CCeEEEEEEechhh-hc-ccCHHHHHHHHHHhcCCC
Confidence 2578898888886 57999999999999985555666555433 34899999998665 33 499999999999999999
Q ss_pred CCCCCCCCcccccCCcCCHHHHHHHHHHHHHhhh
Q 002583 870 CGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMKL 903 (904)
Q Consensus 870 GG~Gk~~~AQG~g~~~~~l~~al~~a~~~~~~~l 903 (904)
|| |||+||||||+++.++++|++.+.+++++.|
T Consensus 847 GG-Gr~d~Aqggg~d~~~~~~al~~~~~~i~~~l 879 (879)
T COG0013 847 GG-GRPDMAQGGGKDPEKLDEALELVIEWVKEKL 879 (879)
T ss_pred CC-CchhhheeCCCCcccHHHHHHHHHHHHHhhC
Confidence 99 9999999999999999999999999998764
No 4
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=100.00 E-value=1.3e-216 Score=1946.29 Aligned_cols=807 Identities=41% Similarity=0.701 Sum_probs=726.4
Q ss_pred CCCCcccccCCCCCCCcccccccccccccccccCCCCCCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHchhc
Q 002583 1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKV 80 (904)
Q Consensus 1 M~qfk~~flG~~~p~~~~~~~~r~~~~QkCiR~ggkhnDl~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~ 80 (904)
||||||||||.++|+ ++|+||||||||+ |||||||+|+|||||||||||||||||||+|||+|||||||++
T Consensus 38 m~~fk~~f~G~~~p~-----~~r~~~~QkCiR~----nDld~VG~t~rHhTfFEMlGnfSFgdYfK~eai~~awe~lT~~ 108 (851)
T TIGR00344 38 MAQFKPIFTGIVKPP-----SNRLVNAQPCIRL----NDIENVGRTARHHTFFEMLGNFSFGDYFKEEAIAFAWELLTSV 108 (851)
T ss_pred hhhhhHHhcCCCCCC-----CCCcccccccccc----cchhhhcCCCcchhhHHhhcccchhhhhHHHHHHHHHHHHhhh
Confidence 999999999999886 5899999999999 9999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhc-CCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCC---CCCCCC
Q 002583 81 YRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTG---NRDAAS 156 (904)
Q Consensus 81 ~~l~~~rl~vT~~~~~~~~~~~~D~e~~~iw~~~-~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~---~~~~~~ 156 (904)
|||||+|||||||++ |+||++||+++ +|++||+++|.+||||+||+ ||||||||||||+++ ++++.+
T Consensus 109 ~~i~~~rl~vTv~~~--------D~ea~~iW~~~g~~~~~i~~~~~~dNfW~~G~-GpcGPcsEi~yD~g~~~~~~~~~~ 179 (851)
T TIGR00344 109 LGLDKERLYVTVYED--------DEEAYEIWEKHGIPAERIIRCGDKDNFWDMGD-GPCGPCTEIYYDRGEFVGGKPGEP 179 (851)
T ss_pred cCCChHHEEEEEcCC--------CHHHHHHHHhcCCCHHHcccCCccCCcCCCCC-cCCccCeEEEEecCcccCCCCCcc
Confidence 999999999999974 89999999999 99999999999999999999 999999999999864 344567
Q ss_pred CCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCC
Q 002583 157 LVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGK 236 (904)
Q Consensus 157 ~~~~~~~~~lEiwNlVFmq~~~~~~g~~~~Lp~~~iDTGmGlERl~~vlqg~~s~ydtd~f~~~~~~i~~~~~~~~y~g~ 236 (904)
++|.|++|||||||||||||||++||+|+|||+||||||||||||+|||||++||||||+|.|||++|++++|+.+|.+.
T Consensus 180 ~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLERl~~vlqg~~snydtD~f~~ii~~i~~~~g~~y~~~~ 259 (851)
T TIGR00344 180 EFFEENDRYVEVWNLVFMQFNRDPDGNYTPLPKKNIDTGMGLERFVAVLQGVPTNYDTDIFLPLIEKIEEITGVKYDSNN 259 (851)
T ss_pred cccCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCCCcCc
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999998544443
Q ss_pred CCCCcch--hchhhhhhhhhhhhheeeeecCCCccCCCCcchHHHHHHHHHHHHHHhhhCCCcchhhhHHHHHHHHhCCC
Q 002583 237 VGADDAD--KVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDV 314 (904)
Q Consensus 237 ~~~~~~~--~~~~~~rviaDH~R~~~f~i~DG~~Psn~grgyvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ 314 (904)
.+..+.+ ..+.||||||||+||++||||||++|||+|||||||||||||+|+|+ .||++.|||++|||.|++.|++.
T Consensus 260 ~~~~d~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grgYvlRrilRRa~r~~~-~lg~~~~fl~~lv~~~~~~m~~~ 338 (851)
T TIGR00344 260 AGIMDEKRVEDLRSLRVIADHTRALAFMLADGVVPSNEGRGYVLRRLIRRALRHGK-KLGLKEAFLYKLVPTLIEVLGDY 338 (851)
T ss_pred cccccccccccchheeeehhhhhhhhhhhccCcccCCCCCchhHHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHHhhh
Confidence 3222222 23469999999999999999999999999999999999999999995 79999999999999999999999
Q ss_pred ChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhheeccCCCChHHHHHHHHHcCCccChhhH
Q 002583 315 FPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGF 394 (904)
Q Consensus 315 ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~~~~~~g~~~f~Lydt~G~p~dl~~~~a~e~g~~vd~~~f 394 (904)
||||.++++.|++||..||++|.+||++|+++|++++++++++.|||++||+||||||||+|||++||+|+|++||+++|
T Consensus 339 ypel~~~~~~i~~ii~~Ee~~f~~tl~~G~~~l~~~~~~~~~~~i~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~F 418 (851)
T TIGR00344 339 YPELKEKQEFVEQILELEEERFAKTLERGLRLFEKLLKKLGKKELDGEDAFKLYDTYGFPVELTKEIAEERGLTVDIPGF 418 (851)
T ss_pred ChHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHccCCCHHHHHHHHHHcCCccCHHHH
Confidence 99999999999999999999999999999999999998765678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcccccCcccccccceEEEEEEeCCeeeeeecCCCeEEEEe
Q 002583 395 NNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVL 474 (904)
Q Consensus 395 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~~~~y~~~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvL 474 (904)
+++|++||++||++++... +..+ ...+.. ..++| ++.+|+ ..+++|+|++++.+++.++++..++.++|+|
T Consensus 419 ~~~~~~~~~~sr~~~~~~~---~~~~---~~~~~~-~~~~t-~~l~Y~-~~~~~a~V~~i~~~~~~v~~~~~g~~~~vvL 489 (851)
T TIGR00344 419 ETLMAEQRERSKAASQTIS---FELQ---EIALAN-VYPAT-EFLGYE-DLEFEAKVIGLFEDGKPVDEAEAGQSVYVIL 489 (851)
T ss_pred HHHHHHHHHHHhhhhhccc---cccc---HHHHhc-ccCCc-ccccee-cccccEEEEEEEeCCccceecccCCceEEEE
Confidence 9999999999987654321 1111 222322 12344 588999 5889999999998888888888888899999
Q ss_pred eceeEEEccCCeeceeeEEEccCeeEEEEEEEEECCEEEEEEEeecCCcccCCCCEEEEEechhhhhhhhhhhhHHHHHH
Q 002583 475 ASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLN 554 (904)
Q Consensus 475 D~T~FYpegGGQ~~D~G~i~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTA~HLL~ 554 (904)
|+|+|||||||||+|+|+|..++..++|++|++.+|.++|++.+.. +++++|++|.+.|||+||+.+|++|||+|||+
T Consensus 490 d~T~FYpEgGGQp~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~--g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~ 567 (851)
T TIGR00344 490 DQTPFYAESGGQIGDTGYLIANDGKFRVVDVQKPNGVVFHFGEVEG--GSLKVGDKVIAVIDEKRRLRIMRNHSATHLLH 567 (851)
T ss_pred eCCCCCCCCCCCCCCEEEEecCCcEEEEEEEEEECCEEEEEEEecc--CCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876678999999999999999987654 67899999999999999999999999999999
Q ss_pred HHHHHHhCCceeeecccccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHhhhcCchhhcCCcCC
Q 002583 555 FALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYP 634 (904)
Q Consensus 555 ~Al~~vlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eeA~~~~~~~~~~~e~y~ 634 (904)
+||+++||.+++|.|++++++++||||+++.++|++++.+||+.||++|++|+||.+.+++++||++.+ .+++++++|+
T Consensus 568 aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNelI~~n~pV~~~~~~~eeA~~~~-~~~~~~e~y~ 646 (851)
T TIGR00344 568 AALQKVLGNHVWQAGSLVSVKKLRFDFSHYRALTREELEKIEDLVNEQILANIPIKVIFMDLDEAKAKG-AFALFGEKYG 646 (851)
T ss_pred HHHHHHhCCceEeccCcccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCceEEEEeCHHHHHhcc-hhhhcCCCCC
Confidence 999999999999999999999999999998899999999999999999999999999999999999975 5567888999
Q ss_pred CCeEEEEecCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeecCCCceEEEEEechhHHHHHHHHHHHH
Q 002583 635 DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLE 714 (904)
Q Consensus 635 d~VRvV~I~~~~~~~l~~~~~~~~~~~~~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~A~~~~~~~~~~~ 714 (904)
+.||||+|+ ++|.++||||||+|||+||.|+|++.+++++|++||+|+||.+|++++++..+.+
T Consensus 647 ~~VRVV~Ig----------------~~d~e~CgGTHV~nTgeIg~~kI~~~~~~~~G~~RIe~v~G~~A~~~~~~~~~~l 710 (851)
T TIGR00344 647 EKVRVVSVG----------------DVSVELCGGTHVRNTGEIGLFKIVKESGIAAGVRRIEAVTGNAAIEYLNEQEDKL 710 (851)
T ss_pred CeEEEEEEC----------------CeeccCCCCCccCChhhCeEEEEEEEeEecCCeEEEEEEEcHHHHHHHHHHHHHH
Confidence 999999998 5899999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHhccccchhHHHHHHHHhhcCCCccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCC
Q 002583 715 KEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAA-SNG 793 (904)
Q Consensus 715 ~~l~~~~~~~~~~i~k~v~~l~~~~~~~~i~~~~~~~l~~~i~~l~~~~~~l~ke~~~~~~~~a~~~~~~~~~~~~-~~~ 793 (904)
++++..++++. .++.++++++++++++++|++++++.+++...+..+.+.++ .++
T Consensus 711 ~~l~~~L~~~~------------------------~~i~~~v~~l~~e~k~l~k~~~~l~~~l~~~~~~~l~~~~~~~~~ 766 (851)
T TIGR00344 711 KELADILKVTP------------------------NELPKKIERFFEEWKALQKELESLKLKIADQKIDELKDKAETING 766 (851)
T ss_pred HHHHHHhCCCH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Confidence 88887776542 46777788888888888888888888888777777665544 466
Q ss_pred CcEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEEeCCCCeEEEEEecCCcccccccccHHHHHHHHhhhcCCCCCCC
Q 002583 794 KPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKG 873 (904)
Q Consensus 794 ~~~iv~~~~~~~d~~~L~~~~~~l~~~~~~~v~ll~~~~~~~k~~~~~~v~~~~~~~~~~~a~~~~k~v~~~~gGkGG~G 873 (904)
.++++..++ +.+++.|+.+++.++++.+..++++++ ..++++.+++++++++ .+++++|++|+|++++.+||||| |
T Consensus 767 ~~~i~~~~~-~~d~~~lr~la~~l~~~~~~~vvll~~-~~~~k~~~v~~~~~~~-~~~~~~A~~lvk~~~~~~gGkGG-G 842 (851)
T TIGR00344 767 VKVLVEVVD-AKDMKSLKTMADRLKSKLGSAIYVLAS-FANGKVKLVCGVSNDV-LNKGIKAGELINQIAQVLGGKGG-G 842 (851)
T ss_pred eEEEEEEcc-CCCHHHHHHHHHHHHhhcCCeEEEEEE-cCCCeEEEEEEEChhH-hhcCCCHHHHHHHHHHHcCCCCC-C
Confidence 777777775 568999999999998865556666665 3457888888888776 55569999999999999999999 9
Q ss_pred CCCCccccc
Q 002583 874 KGGLASGQG 882 (904)
Q Consensus 874 k~~~AQG~g 882 (904)
+|+||||+|
T Consensus 843 ~~~~AQggg 851 (851)
T TIGR00344 843 RPDLAQAGG 851 (851)
T ss_pred cHHhcccCC
Confidence 999999986
No 5
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.5e-213 Score=1927.66 Aligned_cols=816 Identities=46% Similarity=0.772 Sum_probs=740.1
Q ss_pred CCCCcccccCCCCCCCcccccccccccccccccCCCCCCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHchhc
Q 002583 1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKV 80 (904)
Q Consensus 1 M~qfk~~flG~~~p~~~~~~~~r~~~~QkCiR~ggkhnDl~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~ 80 (904)
||||||||+|+.+|+ ++|+||||||||+ |||||||+|+|||||||||||||||||||+|||+|||||||++
T Consensus 43 m~~fk~~f~g~~~p~-----~~r~~~~QkCiR~----nDld~VG~t~rHhTfFEMlGn~sfgdYfK~eai~~awe~lt~~ 113 (865)
T PRK00252 43 MVQFKDYFLGQEKPP-----YPRATTSQKCIRT----NDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIEWAWELLTSV 113 (865)
T ss_pred hhhhhHHhcCCCCCC-----CCCcccccccccc----cchhhccCCCCchHHHHHhcccchhhhhHHHHHHHHHHHHHHH
Confidence 999999999999886 5899999999999 9999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhc--CCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCC--CCCC
Q 002583 81 YRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNR--DAAS 156 (904)
Q Consensus 81 ~~l~~~rl~vT~~~~~~~~~~~~D~e~~~iw~~~--~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~--~~~~ 156 (904)
|||||+|||||||. .|+||++||.+. +|++||++++.+||||+||+||||||||||||||+... ++..
T Consensus 114 ~~i~~~~l~vt~~~--------~D~e~~~iW~~~~g~~~~~i~~~~~~dNfW~~G~~GpcGPcsEi~~d~g~~~~~~~~~ 185 (865)
T PRK00252 114 LGLPKEKLYVTVYE--------DDDEAYDIWKKEIGVPPERIIRIGKKDNFWSMGDTGPCGPCSEIFYDRGEEYWGGPPG 185 (865)
T ss_pred hCCCHHHEEEEEcC--------CCHHHHHHHHhccCCCHHHeecCCccCCccccCCCcCCCCCeEEEEecCcccCCCCCC
Confidence 99999999999996 489999999976 99999999999999999999999999999999997432 3456
Q ss_pred CCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCC
Q 002583 157 LVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGK 236 (904)
Q Consensus 157 ~~~~~~~~~lEiwNlVFmq~~~~~~g~~~~Lp~~~iDTGmGlERl~~vlqg~~s~ydtd~f~~~~~~i~~~~~~~~y~g~ 236 (904)
++|.|+||||||||||||||||+++|+|.|||+||||||||||||+|||||++||||||+|.|||++|++++|+ +|.
T Consensus 186 ~~~~~~~~~lEiwNlVF~q~~~~~~g~~~~Lp~~~iDTG~GlER~~~ilq~~~snydtd~f~~~i~~i~~~~~~-~y~-- 262 (865)
T PRK00252 186 SPEEDGDRYIEIWNLVFMQFNRDEDGNLTPLPKKNIDTGMGLERIAAVLQGVHSNYETDLFRPLIKAIEELTGV-KYE-- 262 (865)
T ss_pred CCcCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCC-CCC--
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999998 573
Q ss_pred CCCCcchhchhhhhhhhhhhhheeeeecCCCccCCCCcchHHHHHHHHHHHHHHhhhCCCcchhhhHHHHHHHHhCCCCh
Q 002583 237 VGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFP 316 (904)
Q Consensus 237 ~~~~~~~~~~~~~rviaDH~R~~~f~i~DG~~Psn~grgyvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~yp 316 (904)
.++||||||||+||++|||+||++|||+|||||||||||||+|++ +.||++.|||++|||.|++.|+++||
T Consensus 263 --------~~~a~rviaDH~R~~~f~i~DG~~Psn~grgYvlRrilRRa~r~~-~~lg~~~~~l~~lv~~~~~~~~~~yp 333 (865)
T PRK00252 263 --------DDVSFRVIADHIRAVAFLIADGVLPSNEGRGYVLRRILRRAVRHG-RLLGIKEPFLYKLVPVVIDEMGDAYP 333 (865)
T ss_pred --------CCceEEEEcchHHHHHHHHccCcccCCCCcchHHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHhhhCh
Confidence 257999999999999999999999999999999999999999999 57999999999999999999999999
Q ss_pred hhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCChhhhhheeccCCCChHHHHHHHHHcCCccChhhHH
Q 002583 317 ELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFN 395 (904)
Q Consensus 317 el~~~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~-~~~~~g~~~f~Lydt~G~p~dl~~~~a~e~g~~vd~~~f~ 395 (904)
||.++++.|++||+.||++|.+||++|+++|++++++.+ ++.|||++||+||||||||+|||++||+|+|++||+++|+
T Consensus 334 el~~~~~~i~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~~~~~~l~g~~~f~LydtyGfP~dlt~~~a~e~g~~vd~~~f~ 413 (865)
T PRK00252 334 ELKEKQDLIEKVLKAEEERFLKTLERGLKLLEEALAKLKAGKVLSGEDAFKLYDTYGFPLDLTAEIARERGLTVDEEGFE 413 (865)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCHHHHHHHHhccCCCHHHHHHHHHHcCCCcCHHHHH
Confidence 999999999999999999999999999999999998754 3589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcccccCcccccccceEEEEEEeCCeeeeeecCCCeEEEEee
Q 002583 396 NAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLA 475 (904)
Q Consensus 396 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~~~~y~~~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD 475 (904)
++|++||++||+.++.... ...+..+.. .. +|+ |.+|+ ..+++|+|++|+.++++++++..++.++|+||
T Consensus 414 ~~~~~~~~~s~~~~~~~~~------~~~~~~~~~-~~-~t~-f~~Y~-~~~~~a~v~~i~~~~~~~~~~~~g~~~~vvLd 483 (865)
T PRK00252 414 AAMEEQRERARAARKFKGD------YNALEELLD-DL-ATE-FVGYD-TLEAEAKVLALFVDGESVDSAKAGEEVEVVLD 483 (865)
T ss_pred HHHHHHHHHHHhhhhcccc------hhHHHHHhh-cC-CCe-eeeee-eccccEEEEEEEeCCceeeeccCCCeEEEEEe
Confidence 9999999999875432210 112233322 12 454 88999 67899999999998888999888888999999
Q ss_pred ceeEEEccCCeeceeeEEEccCeeEEEEEEEEE-CCEEEEEEEeecCCcccCCCCEEEEEechhhhhhhhhhhhHHHHHH
Q 002583 476 SSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIY-GGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLN 554 (904)
Q Consensus 476 ~T~FYpegGGQ~~D~G~i~~~~~~~~V~dv~~~-~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTA~HLL~ 554 (904)
+|+|||||||||+|+|+|.. +..++|.+|++. +|.++|.+.... +++++|++|.+.|||+||+++|++|||+|||+
T Consensus 484 ~T~FYpegGGQ~~D~G~I~~-~~~~~V~~v~~~~~g~i~H~~~~~~--~~l~~G~~V~~~ID~~rR~~~m~~HTa~HLL~ 560 (865)
T PRK00252 484 KTPFYAESGGQVGDTGVIED-GGVFEVTDTQKPPNGLIVHRGKVEE--GELKVGDEVTAEVDEERRRAIARNHSATHLLH 560 (865)
T ss_pred CCCCCCCCCCCCCCEEEEee-CcEEEEEEEEEccCCEEEEEEEecc--CCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999977 668999999998 999999987544 67899999999999999999999999999999
Q ss_pred HHHHHHhCCceeeecccccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHhhhcCchhhcCCcCC
Q 002583 555 FALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYP 634 (904)
Q Consensus 555 ~Al~~vlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eeA~~~~~~~~~~~e~y~ 634 (904)
+|++++||.+++|.|++++++++||||+++.++|++++.+||++||++|++++||.+.+++++||++. ++++++++.|+
T Consensus 561 ~al~~~lg~~v~q~Gs~~~~~~~r~Df~~~~~lt~eel~~IE~~vN~lI~~n~pV~~~~~~~~eA~~~-~~~~~~~~~y~ 639 (865)
T PRK00252 561 AALREVLGEHVTQAGSLVAPDRLRFDFSHFEALTPEELRKIEDLVNEKIRENLPVETEEMSIEEAKKM-GAMALFGEKYG 639 (865)
T ss_pred HHHHHHhhhheEeccCcccCCeEEEEeecCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhC-CchhhccccCC
Confidence 99999999999999999999999999999889999999999999999999999999999999999985 67788888899
Q ss_pred CCeEEEEecCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeecCCCceEEEEEechhHHHHHHHHHHHH
Q 002583 635 DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLE 714 (904)
Q Consensus 635 d~VRvV~I~~~~~~~l~~~~~~~~~~~~~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~A~~~~~~~~~~~ 714 (904)
+.||||+|+ ++++++||||||+|||+||.|+|++.+++++|++||+|+||.+|++++++.+..+
T Consensus 640 ~~VRVV~Ig----------------~~d~~~CgGTHV~nTgeIg~~kI~~~~~~~~g~~RI~~v~G~~A~~~~~~~~~~l 703 (865)
T PRK00252 640 DEVRVVSIG----------------DFSIELCGGTHVSNTGDIGLFKIVSESGVAAGVRRIEAVTGEAALEYLNEQEALL 703 (865)
T ss_pred CeEEEEEEC----------------CceeeCCCCCccCCcccCeEEEEEEEeeecCCeEEEEEEECHHHHHHHHHHHHHH
Confidence 999999998 5799999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHhccccchhHHHHHHHHhhcCCCccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCC
Q 002583 715 KEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAA-SNG 793 (904)
Q Consensus 715 ~~l~~~~~~~~~~i~k~v~~l~~~~~~~~i~~~~~~~l~~~i~~l~~~~~~l~ke~~~~~~~~a~~~~~~~~~~~~-~~~ 793 (904)
++++.+++++ ..++.++++++++++++++|++++++.+++...++.+.+++. .++
T Consensus 704 ~~~~~~l~~~------------------------~~~l~~~v~~l~~e~k~l~k~~~~l~~~l~~~~~~~l~~~~~~i~~ 759 (865)
T PRK00252 704 KELAALLKAK------------------------PSELPERVEALLEELKELEKELEQLKAKLAAAAAGDLLAQAKEVNG 759 (865)
T ss_pred HHHHHHhCCC------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Confidence 8888877764 347778888888889999999999988888888777765543 356
Q ss_pred CcEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEEeCCCCeEEEEEecCCcccccccccHHHHHHHHhhhcCCCCCCC
Q 002583 794 KPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKG 873 (904)
Q Consensus 794 ~~~iv~~~~~~~d~~~L~~~~~~l~~~~~~~v~ll~~~~~~~k~~~~~~v~~~~~~~~~~~a~~~~k~v~~~~gGkGG~G 873 (904)
.++++..++ +.+++.|+.+++.+++..+..+++++. ..++++.+++++++++ ..++++|++|++++++.+||||| |
T Consensus 760 ~~~vv~~~~-~~d~~~L~~la~~l~~~~~~~vvll~~-~~~~k~~~vv~v~~~~-~~~gl~A~~l~k~l~~~lgGkGG-G 835 (865)
T PRK00252 760 VKVLAAQVE-GVDAKALRTLADDLKDKLGSGVVVLAT-VEDGKVSLVVAVTKDL-TDKGLKAGDLVKELAKIVGGKGG-G 835 (865)
T ss_pred eEEEEEEec-CCCHHHHHHHHHHHHhhcCCeEEEEEE-ccCCeEEEEEEEChhH-hhcCcCHHHHHHHHHHhcCCCCC-C
Confidence 677776764 679999999999998753335555553 3356888888888776 55579999999999999999999 9
Q ss_pred CCCCcccccCCcCCHHHHHHHHHHHHHhhh
Q 002583 874 KGGLASGQGTDAAQVTPAMDLAAEFAAMKL 903 (904)
Q Consensus 874 k~~~AQG~g~~~~~l~~al~~a~~~~~~~l 903 (904)
+|.+|||+|+++++++++++.+.++++++|
T Consensus 836 k~~~AQGgg~~~~~l~~al~~a~~~l~~~~ 865 (865)
T PRK00252 836 RPDMAQAGGKDPAKLDEALAAVKEWLAAKL 865 (865)
T ss_pred cHHHeeeCCCCHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999997654
No 6
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=100.00 E-value=3.8e-191 Score=1726.31 Aligned_cols=752 Identities=28% Similarity=0.452 Sum_probs=668.2
Q ss_pred CCCCccccc-CCCCCCCcccccccccccccccccCCCCCCCCCCCCCCCcchhhhhccccccc-----cccHHHHHHHHH
Q 002583 1 MNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAW 74 (904)
Q Consensus 1 M~qfk~~fl-G~~~p~~~~~~~~r~~~~QkCiR~ggkhnDl~~VG~t~rH~TfFEMlGn~Sfg-----dYfK~eai~~aw 74 (904)
||||||||+ |.++|+ ++|+|+||||||+ |||||||+|+||||||||||||||| ||||+|||+|||
T Consensus 97 m~~Fkp~f~~G~~~pp-----~~r~~~sQkCiR~----nDldnVG~t~rH~TfFEMlGn~sFg~~~~~dYfK~EaI~~a~ 167 (902)
T TIGR03683 97 IADFQPWVTSGLVPPP-----ANPLVISQPCIRL----NDIDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCF 167 (902)
T ss_pred hhhhhHhhcCCCCCCC-----CCCceeccccccc----cccccccCCCCcchhhhhccceeeCCCCcccCcHHHHHHHHH
Confidence 999999998 999886 4799999999999 9999999999999999999999999 999999999999
Q ss_pred HHchhccCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCC
Q 002583 75 ELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDA 154 (904)
Q Consensus 75 e~lt~~~~l~~~rl~vT~~~~~~~~~~~~D~e~~~iw~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~ 154 (904)
||| ++||||++|| |+ +||||+|| ||||||||||| + |
T Consensus 168 e~l-~~lgi~~~~i--~~---------------------------------~enfW~~G--GpcGPcsEi~~-~--g--- 203 (902)
T TIGR03683 168 EFL-EELGIDPEEI--TY---------------------------------KESPWEGG--GNAGPCFEVIV-G--G--- 203 (902)
T ss_pred HHH-HHcCCCHHHe--ee---------------------------------cCCccCCC--CCCCCceeeee-C--c---
Confidence 999 9999999998 43 79999999 99999999999 2 2
Q ss_pred CCCCCCCCCCeeEEeeecccccccCC-------CCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHH
Q 002583 155 ASLVNNDDPTCIEIWNIVFIQFNRES-------DGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQA 227 (904)
Q Consensus 155 ~~~~~~~~~~~lEiwNlVFmq~~~~~-------~g~~~~Lp~~~iDTGmGlERl~~vlqg~~s~ydtd~f~~~~~~i~~~ 227 (904)
|||||||||||||++ ||+|+|||+||||||||||||+|||||+|||||| +|.|||++|+++
T Consensus 204 -----------lEiwnlVFmq~~~~~~~~~~~~~g~~~~Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~ 271 (902)
T TIGR03683 204 -----------LELATLVFMQYEEDKEGEIEIKGGRYSEMPLKIVDTGYGLERFVWASQGTPTAYDA-IFPEIVDKLKEN 271 (902)
T ss_pred -----------EeeeeeeeeeeccccccccccCCCeeeeCCCCceecCCCHHHHHHHHcCCCchHHH-HHHHHHHHHHHH
Confidence 999999999999998 8999999999999999999999999999999999 999999999999
Q ss_pred hCCC-----------CCCCCCCCCcchhch------------------------hhhhhhhhhhhheeeeecCCCccCCC
Q 002583 228 TGAR-----------PYSGKVGADDADKVD------------------------MAYRVVADHIRTLSFAIADGSCPGNE 272 (904)
Q Consensus 228 ~~~~-----------~y~g~~~~~~~~~~~------------------------~~~rviaDH~R~~~f~i~DG~~Psn~ 272 (904)
+|++ +|+|.++.++.+.++ .++|+||||+||++|||+||++|||+
T Consensus 272 ~g~~y~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~ 351 (902)
T TIGR03683 272 AGVELIDEEILAENARLAGMMDIEDEEDLRELRKKVADKIGIDVEELEKIIAPVERIYAIADHTRCLAFMLGDGIVPSNV 351 (902)
T ss_pred hCCCcccchhhhhhhhhccccCccccchhhHHhhhhhhhcccchhhhhhhccccceEEEEcchHHHHHHHHhcCCccCCC
Confidence 9974 467777654433222 46799999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhhCCCcchhhhHHHHHHHHhCCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002583 273 GREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQ 352 (904)
Q Consensus 273 grgyvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~~ 352 (904)
|||||||||||||+|++ +.||++.| |++||+.+++.|++.||||.++++.|++||+.||++|.+||++|.++|+++++
T Consensus 352 grGYvlRrilRRa~r~~-~~lg~~~~-l~~lv~~~~~~~~~~ypel~~~~~~I~~ii~~Ee~~f~~Tl~~G~~~~~~~~~ 429 (902)
T TIGR03683 352 KEGYLARLVIRRTLRLM-RELGLDIP-LSDLVEMQLEELKKIYPELKENKDYILDILDLEEEKYRETLERGRRIVERLLK 429 (902)
T ss_pred CcchHHHHHHHHHHHHH-HHhCCCcc-HHHHHHHHHHHHhhhChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999 57999999 99999999999999999999999999999999999999999999999999997
Q ss_pred hhcCCCCChhhhhheeccCCCChHHHHHHHHHcCCccChh-hHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcC
Q 002583 353 DVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRG 431 (904)
Q Consensus 353 ~~~~~~~~g~~~f~Lydt~G~p~dl~~~~a~e~g~~vd~~-~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~ 431 (904)
+ ++.|||++||+||||||||+|||++||+|+|++||++ +|+++|++||++|+++.+. . .... ..+ .+
T Consensus 430 ~--~~~i~g~~~f~LyDTyGfP~dl~~eia~e~g~~vd~~~~F~~~~~~~~~~~~~~~~~-~-----~~~~--~~~--~~ 497 (902)
T TIGR03683 430 T--KKEIPLDDLIELYDSHGIPPEIVKEIAAELGAEVEIPDNFYSIVAERHEKEEKEEEL-P-----KDYE--ERA--KD 497 (902)
T ss_pred c--CCcCCHHHHHHHHHccCCCHHHHHHHHHHcCCcccCCccHHHHHHHHHHHHHhcccc-c-----cchh--HHH--hc
Confidence 5 4679999999999999999999999999999999998 9999999999998764211 0 1111 111 24
Q ss_pred CCCcccccCcc--cccccceEEEEEEeCCeeeeeecCCCeEEEEeeceeEEEccCCeeceeeEEEccCeeEEEEEEEEEC
Q 002583 432 VLATDDSFKFI--WFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYG 509 (904)
Q Consensus 432 ~~~t~~~~~y~--~~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~i~~~~~~~~V~dv~~~~ 509 (904)
+|+|+ +.+|+ |..+++|+|++++. .+|+||+|+|||||||||+|+|+|..+++.++|.+|++.+
T Consensus 498 ~~~T~-~l~y~~~~~~e~~a~Vl~i~~-------------~~vvLd~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~ 563 (902)
T TIGR03683 498 LPETR-RLFYEDPTMREFEAKVLGVFD-------------NYVVLDQTAFYPEGGGQPADTGYLITNGGKIRVVDVQKVG 563 (902)
T ss_pred CCCce-EeccccCccceEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCcEEEEEEEEEEC
Confidence 67786 66676 44789999999973 2699999999999999999999998877789999999999
Q ss_pred CEEEEEEEeecCCcccCCCCEEEEEechhhhhhhhhhhhHHHHHHHHHHHHhCCceeeecccccCCcEEEEecCCCCCCH
Q 002583 510 GFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDP 589 (904)
Q Consensus 510 g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTA~HLL~~Al~~vlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~ 589 (904)
|.|+|.+. . +.+++|++|.+.|||+||+++|++|||+|||++||+++||.|++|+|++++++++||||+|+.++|+
T Consensus 564 g~i~H~~~--~--~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~ 639 (902)
T TIGR03683 564 GVIVHKVD--G--EGIKEGDEVKGEIDWERRLRLMRHHTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHYKRISE 639 (902)
T ss_pred CEEEEEeC--C--CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCCCCCCH
Confidence 99999985 2 4478999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEEcCHHHHhhhcCchhhc-CCcCCCCeEEEEecCcccccccCCCCccccceeeeeccC
Q 002583 590 EHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF-GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGG 668 (904)
Q Consensus 590 e~L~~IE~~~NeiI~~nlpV~~~~~~~eeA~~~~~~~~~~-~e~y~d~VRvV~I~~~~~~~l~~~~~~~~~~~~~e~CgG 668 (904)
+++.+||+.||++|++|+||.+.+++++||++.++.+.++ ++.|++.||||+|+ ++|+++|||
T Consensus 640 eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~~~~~~~~VRVV~Ig----------------~~d~e~CgG 703 (902)
T TIGR03683 640 EEIKEIERLANRIVMENRPVSVKWMDRNEAEQKYGFRLYQGGVPPGREIRVVEIE----------------DWDVQACGG 703 (902)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhcCchhhhccCCCCCCeEEEEEEC----------------CeeeeCCCC
Confidence 9999999999999999999999999999999987765443 35677899999998 579999999
Q ss_pred CCcccccccccEEEEeeeecCCCceEEEEEechhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCCCccCCCc
Q 002583 669 THLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPK 748 (904)
Q Consensus 669 THV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~~~~~~~~~i~k~v~~l~~~~~~~~i~~~~ 748 (904)
|||.|||+||.|+|++++++++|++||+|+||.+|++++++.++.+++++.+++++.
T Consensus 704 THV~nTgeIG~~kI~~~~~i~~Gv~RIe~v~G~~A~~~~~~~~~~l~~~a~~L~~~~----------------------- 760 (902)
T TIGR03683 704 THCRNTGEIGPIKILKTERIQDGVERIEFAAGEAALEYIQELEDLLRESSDILKVPP----------------------- 760 (902)
T ss_pred CCccchhcCceEEEEEEEEecCCeEEEEEEEChHHHHHHHHHHHHHHHHHHHhCCCh-----------------------
Confidence 999999999999999999999999999999999999999999999988888877643
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcEEEEEeccCCCHHHHHHHHHHHHhccCCcEEE
Q 002583 749 KADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAA-SNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMV 827 (904)
Q Consensus 749 ~~~l~~~i~~l~~~~~~l~ke~~~~~~~~a~~~~~~~~~~~~-~~~~~~iv~~~~~~~d~~~L~~~~~~l~~~~~~~v~l 827 (904)
.++.++++++++++++++|++.+++.+++...++.+...+. .++.++++..+ +.|++.|+.+++.+++. + .+++
T Consensus 761 -~~l~~~v~~l~~e~k~l~k~l~~l~~~l~~~~~~~l~~~~~~i~g~~vi~~~~--~~d~~~lr~la~~l~~~-~-~vvv 835 (902)
T TIGR03683 761 -EQLPETVKRFFEEWKEQRKEIERLKKKLAELKIYELISEAERIGGVEVIVELV--DADMDELQEIAEKLAEK-G-LVVV 835 (902)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCCEEEEEEEe--CCCHHHHHHHHHHHhcC-C-cEEE
Confidence 35667778888888888888888888888777777665443 46667776666 46899999999999764 3 4444
Q ss_pred EEEeCCCCeEEEEEecCCcccccccccHHHHHHHHhhhcCCCCCCCCCCCcccccCCcCCHHHHHHHHHHHH
Q 002583 828 FSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFA 899 (904)
Q Consensus 828 l~~~~~~~k~~~~~~v~~~~~~~~~~~a~~~~k~v~~~~gGkGG~Gk~~~AQG~g~~~~~l~~al~~a~~~~ 899 (904)
+++. .++++.+++++++++ +++|++|++++++.+||||| |+|++|||+|++++++++|++.+++++
T Consensus 836 l~~~-~~~k~~~v~~~~~~~----~~~A~~lvk~l~~~lgGkGG-Gk~~~AQGgg~~~~~l~~al~~~~~~l 901 (902)
T TIGR03683 836 LVSG-GGGNGRVVISSGEKA----GVDAGELVREIAKELGGGGG-GKPDLAQGGGPDDLKIDEALEKIKSFL 901 (902)
T ss_pred EEEc-cCCcEEEEEEEChhH----hhhHHHHHHHHHHhcCCCcC-CchhheeecCCCHHHHHHHHHHHHHHh
Confidence 4443 245666666666543 58999999999999999999 999999999999999999999998876
No 7
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.8e-190 Score=1717.19 Aligned_cols=754 Identities=27% Similarity=0.467 Sum_probs=669.9
Q ss_pred CCCCccccc-CCCCCCCcccccccccccccccccCCCCCCCCCCCCCCCcchhhhhccccccc-----cccHHHHHHHHH
Q 002583 1 MNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAW 74 (904)
Q Consensus 1 M~qfk~~fl-G~~~p~~~~~~~~r~~~~QkCiR~ggkhnDl~~VG~t~rH~TfFEMlGn~Sfg-----dYfK~eai~~aw 74 (904)
||||||||+ |.++|+ ++|+|+||||||+ |||||||+|+||||||||||||||| ||||+|||+|||
T Consensus 100 m~~Fkp~f~~G~~~pp-----~~~~~~sQ~CiR~----nDldnVG~t~rH~T~FEMlGn~sFg~~~~~~YfK~eaI~~a~ 170 (900)
T PRK13902 100 IYDFQPWVTSGLVPPP-----ANPLVISQPCIRL----NDIDNVGRTGRHLTSFEMMAHHAFNYPDKEVYWKDETVEYCF 170 (900)
T ss_pred hhhhhHHhcCCCCCCC-----CCCceecccccch----hhhhhccccCCchhhhhhccceeeCCCCcccccHHHHHHHHH
Confidence 999999998 999876 4799999999999 8999999999999999999999999 999999999999
Q ss_pred HHchhccCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCC
Q 002583 75 ELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDA 154 (904)
Q Consensus 75 e~lt~~~~l~~~rl~vT~~~~~~~~~~~~D~e~~~iw~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~ 154 (904)
||||++|||||+|| |+ +||||+|| ||||||||||| + |
T Consensus 171 e~lt~~lgi~~~~I--~~---------------------------------~enfW~~G--GpcGPcsEi~~-~--g--- 207 (900)
T PRK13902 171 EFFTKELGIDPEEI--TF---------------------------------KESWWEGG--GNAGPCFEVLV-R--G--- 207 (900)
T ss_pred HHHHhhcCCCHHHe--ee---------------------------------cccccCCC--CCCCCceeeee-C--C---
Confidence 99999999999998 43 69999999 99999999999 2 2
Q ss_pred CCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC---
Q 002583 155 ASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR--- 231 (904)
Q Consensus 155 ~~~~~~~~~~~lEiwNlVFmq~~~~~~g~~~~Lp~~~iDTGmGlERl~~vlqg~~s~ydtd~f~~~~~~i~~~~~~~--- 231 (904)
|||||||||||+|+ +|+|+|||+||||||||||||+|||||+|||||| +|.|||++|++++|++
T Consensus 208 -----------lEiwnlVFmqy~~~-~g~~~~Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~~~~ 274 (900)
T PRK13902 208 -----------LELATLVFMQYKKD-GNRYVEMPLKIVDTGYGLERIAWASQGTPTAYDA-IFGELVDKLKENAGVEEPD 274 (900)
T ss_pred -----------EEeeeeeeeEEEcC-CCeeeeCCCCeeeCCcCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCccc
Confidence 99999999999998 8999999999999999999999999999999999 9999999999999974
Q ss_pred --------CCCCCCCCCcchhc-----h-------------------hhhhhhhhhhhheeeeecCCCccCCCCcchHHH
Q 002583 232 --------PYSGKVGADDADKV-----D-------------------MAYRVVADHIRTLSFAIADGSCPGNEGREYVLR 279 (904)
Q Consensus 232 --------~y~g~~~~~~~~~~-----~-------------------~~~rviaDH~R~~~f~i~DG~~Psn~grgyvlR 279 (904)
+|+|.++.++.+.+ + .++|+||||+||++|||+||++|||+|||||||
T Consensus 275 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~vIaDH~R~~~f~i~DGv~PsN~grGYvlR 354 (900)
T PRK13902 275 EEILAEAARLAGLMDIEEIEDLRSLRQKVAKKLGIDVEELEELLEPLEAIYAIADHTRTLAFMLGDGIVPSNVGEGYLAR 354 (900)
T ss_pred chhhhhhhhhcccCCcccchhHHHHHHHHHhhcccchhhhhhhccccceEEEEecHHHHHHHHHhCCCcCCCCCcchHHH
Confidence 35666664332211 1 578899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCcchhhhHHHHHHHHhCCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 002583 280 RILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVL 359 (904)
Q Consensus 280 rilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~~~~~ 359 (904)
||||||+|+++ .||++.| |++||+.+++.|++.||||.++++.|++||..||++|.+||++|.++|++++++. +.|
T Consensus 355 rilRRa~r~~~-~lg~~~~-l~~lv~~~~~~~~~~ypel~~~~~~I~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~--~~l 430 (900)
T PRK13902 355 LVIRRTLRLLD-ELGLDVP-LSELVDMQIDELKEDYPELKENRDYILDIVDLEEEKYRETLERGKRIVERLAKKK--EEI 430 (900)
T ss_pred HHHHHHHHHHH-HhCCCcc-HHHHHHHHHHHHhhhChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCC
Confidence 99999999994 7999999 9999999999999999999999999999999999999999999999999999864 679
Q ss_pred ChhhhhheeccCCCChHHHHHHHHHcCCccCh-hhHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcccc
Q 002583 360 SGQDAFILWDTYGFPLDLTQLMAEERGLLVDI-EGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDS 438 (904)
Q Consensus 360 ~g~~~f~Lydt~G~p~dl~~~~a~e~g~~vd~-~~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~~ 438 (904)
||++||+||||||||+|||++||+++|++||+ ++|+++|++||++|+++.+.. . ... ..+ .++|+|+ +
T Consensus 431 ~g~~~f~LYDt~G~P~dl~~eia~e~g~~vd~p~~F~~~~~~~~~~~~~~~~~~------~-~~~-~~~--~~~~~T~-~ 499 (900)
T PRK13902 431 PLDDLIELYDSHGIPPEIVKEIAKKKGVEVEVPDNFYSLVAERHEKAEEEEEEP------V-VEE-ERL--KDLPETE-K 499 (900)
T ss_pred CHHHHhhhhhcCCCCHHHHHHHHHHcCCccCchhhHHHHHHHHHHHHhhccccc------c-chh-hHh--hcCCCce-E
Confidence 99999999999999999999999999999999 899999999999987631110 0 000 112 2467786 6
Q ss_pred cCcc--cccccceEEEEEEeCCeeeeeecCCCeEEEEeeceeEEEccCCeeceeeEEEccCeeEEEEEEEEECCEEEEEE
Q 002583 439 FKFI--WFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIG 516 (904)
Q Consensus 439 ~~y~--~~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~i~~~~~~~~V~dv~~~~g~i~H~~ 516 (904)
.+|+ |..+++|+|++++. .+|+||+|+|||||||||+|+|+|..++..++|.+|++.+|.++|.+
T Consensus 500 l~y~~~~~~~~~a~Vl~i~~-------------~~vvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~ 566 (900)
T PRK13902 500 LFYEDPYMREFEAKVLGVID-------------NYVVLDQTAFYPEGGGQPADTGVLIVDGKGYKVVDVQKVGGVIVHVL 566 (900)
T ss_pred eccccCccceEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCcEEEEEEEEEECCEEEEEe
Confidence 6676 44789999999983 27999999999999999999999987777899999999999999998
Q ss_pred EeecCCcccCCCCEEEEEechhhhhhhhhhhhHHHHHHHHHHHHhCCceeeecccccCCcEEEEecCCCCCCHHHHHHHH
Q 002583 517 SLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIE 596 (904)
Q Consensus 517 ~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTA~HLL~~Al~~vlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE 596 (904)
. . +.+.+|++|.+.|||+||+++|++|||+|||++|++++||.|++|+|++++++++||||+|++++|++++.+||
T Consensus 567 ~--~--~~~~~G~~V~~~VD~~rR~~~mr~HTAtHLL~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE 642 (900)
T PRK13902 567 E--G--EPPKKGDEVRGEIDWERRYRLMRHHTATHIILAAARKVLGDHVWQAGAQKTVDKARLDITHYKRITREEVKEIE 642 (900)
T ss_pred C--C--CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCCEEEEEeCCCCCCHHHHHHHH
Confidence 4 2 44556999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred HHHHHHHHcCCCeEEEEcCHHHHhhhcCchhhc-CCcCCCCeEEEEecCcccccccCCCCccccceeeeeccCCCccccc
Q 002583 597 SIVNEQIKAELDVFSKEATLAEAKCINGLRAVF-GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTR 675 (904)
Q Consensus 597 ~~~NeiI~~nlpV~~~~~~~eeA~~~~~~~~~~-~e~y~d~VRvV~I~~~~~~~l~~~~~~~~~~~~~e~CgGTHV~nTg 675 (904)
+.||++|++|+||.+.+++++||++.++.+.++ ++.|++.||||+|+ ++|+++||||||.|||
T Consensus 643 ~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~g~~~~~~VRVV~Ig----------------~~d~e~CgGTHV~nTg 706 (900)
T PRK13902 643 RLANEIVMENRPVKVEWMDRNEAEQKYGFRLYQGGVPPGKTIRVVEIG----------------DWDVEACGGTHVSNTG 706 (900)
T ss_pred HHHHHHHHcCCCEEEEecCHHHHHhccchhhhccCCCCCCeEEEEEEC----------------CeeeeCCCCCCcCcHh
Confidence 999999999999999999999999987765544 46778899999998 5899999999999999
Q ss_pred ccccEEEEeeeecCCCceEEEEEechhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCCCccCCCchhHHHHH
Q 002583 676 EAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAK 755 (904)
Q Consensus 676 eIg~fkI~~~~~~~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~~~~~~~~~i~k~v~~l~~~~~~~~i~~~~~~~l~~~ 755 (904)
+||.|+|++++++++|++||+|+||.+|++++++.++.+++++.+++++. .++.++
T Consensus 707 eIG~~kI~~~e~i~~Gv~RIe~v~G~~A~~~~~~~~~~l~~~a~~L~~~~------------------------~el~~~ 762 (900)
T PRK13902 707 EIGPIKILKTERIQDGVERLEFAAGDAAVEYIQELEDLLKEAAEILGVPP------------------------EQLPKT 762 (900)
T ss_pred hCeeEEEEEEEEecCCeEEEEEEEChHHHHHHHHHHHHHHHHHHHhCCCh------------------------HHHHHH
Confidence 99999999999999999999999999999999999999888888877643 466777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEEeCCC
Q 002583 756 IALLQNQVRKAQKKVAEENLQKAVKVATETAEAAA-SNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETT 834 (904)
Q Consensus 756 i~~l~~~~~~l~ke~~~~~~~~a~~~~~~~~~~~~-~~~~~~iv~~~~~~~d~~~L~~~~~~l~~~~~~~v~ll~~~~~~ 834 (904)
++++++++++++|++.+++.+++...++.+..++. .++.++++..+ +.|++.|+.+++.+++... .+++++ . +
T Consensus 763 v~kl~ee~k~l~kei~~l~~~l~~~~~~~l~~~~~~~~g~~~i~~~~--~~d~~~Lr~~a~~l~~~~~-~vvl~~-~--~ 836 (900)
T PRK13902 763 VERFFEEWKEQKKEIEKLRKELAELLASELLSKAEEVGGVKVVVEEV--DADEDELRKIANELAKEGK-VALVVL-G--N 836 (900)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheEeCCEEEEEEEe--CCCHHHHHHHHHHHHhcCC-eEEEEE-c--C
Confidence 88888888888888888888888777777665543 46677777666 4689999999999987543 344444 2 3
Q ss_pred CeEEEEEecCCcccccccccHHHHHHHHhhhcCCCCCCCCCCCcccccCCcCCHHHHHHHHHHHHHhh
Q 002583 835 NKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMK 902 (904)
Q Consensus 835 ~k~~~~~~v~~~~~~~~~~~a~~~~k~v~~~~gGkGG~Gk~~~AQG~g~~~~~l~~al~~a~~~~~~~ 902 (904)
++..+++++++++ .++|++|++++++.+||||| |+|+||||+|++++++++|++.+++++++.
T Consensus 837 ~k~~~v~~~~~~~----~~~a~~lvk~l~~~~gGkGG-Gk~~~AQGgg~~~~~l~~al~~~~~~l~~~ 899 (900)
T PRK13902 837 GGGQIVVGVGEDV----GVNAGEIVRELAKVLGGKGG-GKPDLAQGGGPDPKKKEEALEAAKEVLKEA 899 (900)
T ss_pred CcEEEEEEEChhh----hhhHHHHHHHHHHhcCCCCC-CchHheeeCCCCHHHHHHHHHHHHHHHHhc
Confidence 4556666666554 38999999999999999999 999999999999999999999999998764
No 8
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.4e-175 Score=1508.34 Aligned_cols=543 Identities=41% Similarity=0.724 Sum_probs=502.3
Q ss_pred CCCCcccccCCCCCCCcccccccccccccccccCCCCCCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHchhc
Q 002583 1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKV 80 (904)
Q Consensus 1 M~qfk~~flG~~~p~~~~~~~~r~~~~QkCiR~ggkhnDl~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~ 80 (904)
||||||||+|.++|+ ++|+||||||||+ ||||||| |+|||||||||||||||||||+|||+|||||||++
T Consensus 42 m~~fk~~f~G~~~p~-----~~r~~~~QkCiR~----~Dle~VG-~~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~ 111 (594)
T PRK01584 42 MHPLVPYLLGEPHPS-----GTRLVDVQKCLRT----GDIDEVG-DLSHLTFFEMLGNWSLGAYFKEESIKYSFEFLTSP 111 (594)
T ss_pred hhhhhHHhcCCCCCC-----CCCcccccccccc----ccccccC-CCcchhHHHhhccccHhhhhHHHHHHHHHHHhccc
Confidence 999999999999876 5899999999999 7999999 89999999999999999999999999999999998
Q ss_pred --cCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhc-CCCCCcccCCCCCCcc-cCCCCCCCcCceeEEeecCCCCCC-C
Q 002583 81 --YRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPASRVLPFGCKDNFW-EMGDTGPCGPCSEIHYDRTGNRDA-A 155 (904)
Q Consensus 81 --~~l~~~rl~vT~~~~~~~~~~~~D~e~~~iw~~~-~~~~~i~~~~~~dNfW-~mG~~GpcGPcsEi~yd~~~~~~~-~ 155 (904)
|||||+|||||||+||+. +|+|+||++||+++ +|++||++++.+|||| +||++||||||||||||+++.... .
T Consensus 112 ~~l~l~~~rl~vTv~~~~~~--~~~D~Ea~~iW~~~g~~~~rI~~~~~~dNfW~~~G~~GPCGPcsEI~~d~g~~~~~~~ 189 (594)
T PRK01584 112 DYLNIPKDKLYVTVFEGDEE--IPRDEETASVWESLGIPKDRIFYLSREHNWWGPVGETGPCGPDTEIFVDTGKPKCSVN 189 (594)
T ss_pred hhcCCCHHHeEEEEeCCCCC--CCCCHHHHHHHHHcCCCHHHeeeCCCCCCcccccCCCcCCCCceEEEEecCCcccccc
Confidence 999999999999999885 89999999999999 9999999999999999 799999999999999998653111 1
Q ss_pred CCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCC
Q 002583 156 SLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSG 235 (904)
Q Consensus 156 ~~~~~~~~~~lEiwNlVFmq~~~~~~g~~~~Lp~~~iDTGmGlERl~~vlqg~~s~ydtd~f~~~~~~i~~~~~~~~y~g 235 (904)
+.++++|+|||||||+|||||||++||+|+|||+||||||||||||+|||||++||||||+|.|||++|++++|+ +|..
T Consensus 190 ~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDTGmGLERl~~vlqg~~s~ydtdlf~pii~~i~~~~~~-~y~~ 268 (594)
T PRK01584 190 CRPTCSCGKYFEIWNNVFMQYNKDEDGNYEELKRKCVDTGMGIERTIAFLQGKSSVYDTEAFTPIIKRIEKISGK-IYGQ 268 (594)
T ss_pred cCCCCCCCceEEEeeeeeeeeeecCCCccccCCCCceeCCcCHHHHHHHHcCCCCccchhhhHHHHHHHHHHhCC-CcCC
Confidence 234568899999999999999999999999999999999999999999999999999999999999999999997 5731
Q ss_pred CCCCCcchhchhhhhhhhhhhhheeeeecC--CCccCCCCcchHHHHHHHHHHHHHHhhhCCCcchhhhHHHHHHHHhCC
Q 002583 236 KVGADDADKVDMAYRVVADHIRTLSFAIAD--GSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGD 313 (904)
Q Consensus 236 ~~~~~~~~~~~~~~rviaDH~R~~~f~i~D--G~~Psn~grgyvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~ 313 (904)
.+..|.||||||||+||++|||+| |++|||+|||||||||||||+|+|+ .||++.+||++||+.|++.|++
T Consensus 269 ------~~~~~~a~rvIaDH~R~~~f~i~D~~Gv~PsN~grGYvlRrilRRa~r~~~-~lg~~~~fl~~lv~~v~~~~~~ 341 (594)
T PRK01584 269 ------NEEDDRSIRIIADHIRAACFILGDPFVVLPSNVGQGYVLRRLIRRSIRHAK-KLGIESHFLADLVDSVEEIYGS 341 (594)
T ss_pred ------CCCCceeEEEEecHHHHHHHHhhcccCCCCCCCCCchHHHHHHHHHHHHHH-HhCCCchhHHHHHHHHHHHHhh
Confidence 123468999999999999999999 9999999999999999999999995 7999999999999999999999
Q ss_pred CChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCChhhhhheeccCCCChHHHHHHHHHcCCccChh
Q 002583 314 VFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIE 392 (904)
Q Consensus 314 ~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~-~~~~~g~~~f~Lydt~G~p~dl~~~~a~e~g~~vd~~ 392 (904)
.||||.++++.|++||+.||++|.+||++|+++|++++++++ ++.|||++||+||||||||+|||++||+|+|++||++
T Consensus 342 ~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~~i~~~~~~~~~~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~ 421 (594)
T PRK01584 342 FYPELTEKKDFIKEELNKEEEKFFKTLRKGEQEFIKLIPNLGSSKIIPGDIAFKLYDTYGFPYEITEELASEYGFTVDRE 421 (594)
T ss_pred hChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCHHHHHhhhccCCCCHHHHHHHHHHcCCeecHH
Confidence 999999999999999999999999999999999999998775 5689999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcccccCcccccccceEEEEEEeCCeeeeeecCCCeEEE
Q 002583 393 GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGI 472 (904)
Q Consensus 393 ~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~~~~y~~~~~~~a~Vl~i~~~~~~~~~~~~~~~~~v 472 (904)
+|+++|++|+++||++. . . .|.
T Consensus 422 ~f~~~~~~~~~~~~~~~---------------------~---~-~f~--------------------------------- 443 (594)
T PRK01584 422 GFDEHFKKHQKVSKKGA---------------------D---K-VFK--------------------------------- 443 (594)
T ss_pred HHHHHHHHHHHHHhhcc---------------------c---c-ccc---------------------------------
Confidence 99999999988876410 0 0 010
Q ss_pred EeeceeEEEccCCeeceeeEEEccCeeEEEEEEEEECCEEEEEEEeecCCcccCCCCEEEEEechhhhhhhhhhhhHHHH
Q 002583 473 VLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHM 552 (904)
Q Consensus 473 vLD~T~FYpegGGQ~~D~G~i~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTA~HL 552 (904)
||++|+|. .+|++|||+||
T Consensus 444 ------------g~~~d~g~-------------------------------------------------~~~r~HTAtHL 462 (594)
T PRK01584 444 ------------GGLADHSY-------------------------------------------------ETTKLHTATHL 462 (594)
T ss_pred ------------CCcCcccc-------------------------------------------------cHHHHHHHHHH
Confidence 24555543 47999999999
Q ss_pred HHHHHHHHhCCceeeecccccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHhhhcCchhhcCCc
Q 002583 553 LNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEV 632 (904)
Q Consensus 553 L~~Al~~vlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eeA~~~~~~~~~~~e~ 632 (904)
|++|++++||.++.|+|+++.++++||||+++.++|++++.+||+.||++|++|+||.+.+++++||++. +.+++|++.
T Consensus 463 L~~ALr~vlG~~v~q~Gs~v~~d~~r~DF~~~~~it~edL~~IE~~vNeiI~~n~pV~~~~~s~eEA~~~-~~~~lf~e~ 541 (594)
T PRK01584 463 LHKALRLVLGDHVRQKGSNITAERLRFDFSHPEKMTDDEIKKVEDIVNLQIKNDLSVKKEVMSLEEAREK-GAMALFGEK 541 (594)
T ss_pred HHHHHHHHcCccceeecCCcCCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHHhc-chhhhcccc
Confidence 9999999999999999999999999999999889999999999999999999999999999999999996 456788888
Q ss_pred CCCCeEEEEecCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeecCCCceEEEEEe
Q 002583 633 YPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVT 699 (904)
Q Consensus 633 y~d~VRvV~I~~~~~~~l~~~~~~~~~~~~~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~vt 699 (904)
|++.||||+|+ ++|.++||||||+|||+||.|+|++++++++|++||+|+.
T Consensus 542 y~~~VRVV~Ig----------------d~d~elCGGTHV~nTgeIG~fkI~s~~s~g~GvrRI~av~ 592 (594)
T PRK01584 542 YEDIVKVYEID----------------GFSKEVCGGPHVENTGELGTFKIQKEQSSSSGVRRIRAIL 592 (594)
T ss_pred CCCcEEEEEEC----------------CeeeeCCCCCCCCCcccCceEEEEecccccCCeEEEEEEe
Confidence 99999999998 5789999999999999999999999999999999999986
No 9
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=100.00 E-value=3.7e-159 Score=1391.30 Aligned_cols=508 Identities=54% Similarity=0.931 Sum_probs=427.1
Q ss_pred CCCCcccccCCC-CCCCcccccccccccccccccCCCCCCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHchh
Q 002583 1 MNQYKPIFLGTA-DPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTK 79 (904)
Q Consensus 1 M~qfk~~flG~~-~p~~~~~~~~r~~~~QkCiR~ggkhnDl~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~ 79 (904)
||||||||+|.. +|+ ++|+|+||||||+|||||||||||+|+|||||||||||||||||||+|||+|||||||+
T Consensus 38 m~~fkp~f~g~~~~p~-----~~r~~~~Q~CiR~~GkhnDld~VG~t~rH~T~FEMlGn~sfgdYfK~eai~~awe~lt~ 112 (552)
T PF01411_consen 38 MNQFKPYFLGGEVPPP-----ANRLVSSQKCIRTGGKHNDLDNVGRTGRHHTFFEMLGNFSFGDYFKEEAIEYAWEFLTE 112 (552)
T ss_dssp GGGGCCCCTTSSS--S-----SSCEEEEEEEE-EETTEECGGGTTTSSS--SEEEEEEEEEECSS-HHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCCCCC-----CCcccccceeeccCCCcchhhhcCCCceEeeehhhccccccccccHHHHHHHHHHHHHh
Confidence 999999999999 554 58999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhc--CCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCC---C
Q 002583 80 VYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRD---A 154 (904)
Q Consensus 80 ~~~l~~~rl~vT~~~~~~~~~~~~D~e~~~iw~~~--~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~---~ 154 (904)
+|||||+|||||||.+ |+||++||+++ +|++||++++.+||||+||++||||||||||||+|..+. .
T Consensus 113 ~l~i~~~~l~vt~~~~--------d~ea~~~w~~~~g~~~~~i~~~~~~~nfw~~g~~gpcgpcseI~~d~G~e~~~~~~ 184 (552)
T PF01411_consen 113 VLGIPPDRLYVTVFEW--------DGEAGEIWEKIVGGPEERILVFGKKDNFWEMGDTGPCGPCSEIFYDRGEERGCWDS 184 (552)
T ss_dssp TTT--GGGEEEEEECC--------ECCCCCCCCECCTTECCCEEEE-CCEEEEESSTSEEEEEEEEEEEEEECCCHHHHH
T ss_pred hcCCChHhEEEEEeCC--------chhHHHHHHHhcCCCHHHeEecCCCCceEECCCCCCCCCCEEEEECCCcccCcccc
Confidence 9999999999999986 55999999999 999999999999999999999999999999999976443 3
Q ss_pred CCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCC
Q 002583 155 ASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYS 234 (904)
Q Consensus 155 ~~~~~~~~~~~lEiwNlVFmq~~~~~~g~~~~Lp~~~iDTGmGlERl~~vlqg~~s~ydtd~f~~~~~~i~~~~~~~~y~ 234 (904)
.+.++++++||+||||+|||||+|++||+++|||+++|||||||||++++|||++||||||+|.|+++.+++++++ +|.
T Consensus 185 ~~~~~~~~~~~~eiwn~vf~q~~~~~~g~~~~L~~~~idtGmgler~~~~lq~~~s~~~tdlf~~i~~~i~~~~~~-~y~ 263 (552)
T PF01411_consen 185 QGTPTCDDDRFLEIWNLVFMQYNRDEDGSLEPLPKKNIDTGMGLERLAAVLQGVRSNYDTDLFMPIIEAIEELSGV-PYK 263 (552)
T ss_dssp HSTSSHHHHHECCCCCCCCCEEEETTTSHCCCCCCCCCCCCEEHHHHCHHHCCHCCHHHCHHTCHHHHHHHHHHC---TT
T ss_pred ccccccccccHHHHHHHHHHHhccccccccccccchhhhcCCCcHHHHHHHhhhhhhhchhhhhhHHHHHHHHcCC-Ccc
Confidence 4667789999999999999999999999999999999999999999999999999999999999999999999998 672
Q ss_pred CCCCCCcchhchhhhhhhhhhhhheeeeecCCCccCCCCcchHHHHHHHHHHHHHHhhhCCCcchhhhHHHHHHHHhCCC
Q 002583 235 GKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDV 314 (904)
Q Consensus 235 g~~~~~~~~~~~~~~rviaDH~R~~~f~i~DG~~Psn~grgyvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ 314 (904)
+....++|+|+||||+||++|||+||++|||+|||||||||||||+|++ +.||++.+||++||+.|++.|++.
T Consensus 264 ------~~~~~~~a~rvIaDH~Ra~~f~i~DGv~PsN~GrGYvlRriiRRa~r~~-~~lg~~~~fl~~lv~~vi~~~~~~ 336 (552)
T PF01411_consen 264 ------DEEEIDVALRVIADHIRALTFAIADGVLPSNEGRGYVLRRIIRRAVRFG-RKLGIEEPFLYELVPVVIESMGDF 336 (552)
T ss_dssp ------SSCCCHHHHHHHHHHHHHHHHHHHTT--SSSSHHHHHHHHHHHHHHHHH-HHTT-SS--HHHHHHHHHHHHTTT
T ss_pred ------cccccccEEEEEcchhhceeeEecCCeeecccCCcchHHHHHHHHHHHH-HHhCCCccchHHHHHHHHHHhhcc
Confidence 2345688999999999999999999999999999999999999999999 589999999999999999999999
Q ss_pred ChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCChhhhhheeccCCCChHHHHHHHHHcCCccChhh
Q 002583 315 FPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEG 393 (904)
Q Consensus 315 ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~-~~~~~g~~~f~Lydt~G~p~dl~~~~a~e~g~~vd~~~ 393 (904)
||||.++++.|++||+.||++|.+||++|+++|++++++++ ++.|||++||+||||||||+|||++||+|+|++||+++
T Consensus 337 ypel~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~~~lsge~aF~LYDTyGfP~Dlt~eia~e~gl~vD~~~ 416 (552)
T PF01411_consen 337 YPELKENKDYIKDIIKEEEERFLKTLERGLKLLEKLIKKLKKKKELSGEDAFKLYDTYGFPLDLTEEIAEEKGLSVDEEG 416 (552)
T ss_dssp GTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEE-HHHHHHHHHHH---HHHHHHHHHTTT-EE-HHC
T ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCChHHheeehhccCCCHHHHHHHHHHhceeecHHH
Confidence 99999999999999999999999999999999999999987 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcccccCcccccccceEEEEEEeCCeeeeeecCCCeEEEE
Q 002583 394 FNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIV 473 (904)
Q Consensus 394 f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~~~~y~~~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vv 473 (904)
|+++|++||++||++++.... ...+.. .+ ..++.+++|.+|+ .++++|+|++|+.++++++++..++..+||
T Consensus 417 f~~~m~~qr~~sr~~~~~~~~--~~~~~~---~~--~~l~~~teF~gYe-~~~~~akVlal~~~~~~~~~v~~~~~~~VV 488 (552)
T PF01411_consen 417 FEYAMEEQRERSRAAKKKKSS--IEEDVS---AL--AELPKTTEFVGYE-YLECEAKVLALFKDGEFVAKVEEGEEGYVV 488 (552)
T ss_dssp CHHHHHHHCHHHCCHH----------SSS---TT--TTCHHHEETCCCC-------TT---TT--EEEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHhhhccccccc--hhhhHH---HH--hhhhcccccceee-cccccceEEEEEeCCEEEeeecCCceEEEE
Confidence 999999999999876543320 011111 11 1345556799999 678999999999999999888888888999
Q ss_pred eeceeEEEccCCeeceeeEEEccCeeEEEEEEEEECCEEEEEEEeecCCcccCCCCEEEEEechhh
Q 002583 474 LASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDR 539 (904)
Q Consensus 474 LD~T~FYpegGGQ~~D~G~i~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~r 539 (904)
||+|+|||||||||+|+|+|..++..+.|.+|++.+|+++|.+.... +.+++|+.|.++|||+|
T Consensus 489 LD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~~~~--g~l~~G~~V~~~VD~eR 552 (552)
T PF01411_consen 489 LDKTPFYPEGGGQPGDTGTIIGDGGEFEVTDVQKVGGVILHIGEVES--GSLKVGDEVTAEVDWER 552 (552)
T ss_dssp ESEE-S--SBTTB----EEECCTTEEEEEEEEEEETTEEEEEESSG---GG--TTSEEEEEE-HHH
T ss_pred ECCccccCCCCCCCCCeEEEeecceEEEEEEEEEECCEEEEEEeccC--CCCCCCCEEEEEecCCC
Confidence 99999999999999999999988889999999999999999998765 78999999999999987
No 10
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=100.00 E-value=2.6e-91 Score=717.36 Aligned_cols=191 Identities=63% Similarity=1.130 Sum_probs=183.7
Q ss_pred CCCCcccccCCCCCCCcccccccccccccccccCCCCCCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHchhc
Q 002583 1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKV 80 (904)
Q Consensus 1 M~qfk~~flG~~~p~~~~~~~~r~~~~QkCiR~ggkhnDl~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~ 80 (904)
||||||||+|.++|+ ++|||+||||||+ |||||||+|+|||||||||||||||||||+|||+|||||||++
T Consensus 40 M~~Fkp~f~G~~~p~-----~~r~~~~QkCiR~----~DienVG~t~rHhTfFEMLGNfSFgdYFK~eaI~~awe~LT~~ 110 (232)
T cd00673 40 MNQFKPIFLGEVPPP-----ANRLVNSQKCIRA----GDIDNVGKTGRHHTFFEMLGNFSFGDYFKEEAIAFAWELLTEV 110 (232)
T ss_pred hhhhhHHhcCCCCCC-----CCceeeeeeceec----CChhhccccccchhhhhhhcccchhhhhHHHHHHHHHHHHHhh
Confidence 999999999999876 5899999999999 7999999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhc--CCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCC
Q 002583 81 YRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLV 158 (904)
Q Consensus 81 ~~l~~~rl~vT~~~~~~~~~~~~D~e~~~iw~~~--~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~ 158 (904)
|||||+|||||||++ |+||++||.+. +|++||++++.+||||+||++||||||||||||+++++++...+
T Consensus 111 l~l~~~rl~vTv~~~--------dde~~~~w~~~~g~~~~~i~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~ 182 (232)
T cd00673 111 LGLPKDRLYVSVFEG--------DDEEEAIWWWKIGLPGIRIERIGFKDNFWEMGGNGPCGPCSEIFYDRGEERDAASLP 182 (232)
T ss_pred cCCCccceEEEEeCC--------CHHHHHHHHHhhCCCHHHeeeCCccCCCCCCCCCcCCCCCEEEEEccCCCcCccccc
Confidence 999999999999974 89999999988 99999999999999999999999999999999998776666678
Q ss_pred CCCCCCeeEEeeecccccccCCCCccccCCCCccccCchHHHHHHHHhCC
Q 002583 159 NNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNK 208 (904)
Q Consensus 159 ~~~~~~~lEiwNlVFmq~~~~~~g~~~~Lp~~~iDTGmGlERl~~vlqg~ 208 (904)
++|++|||||||||||||+|+++|+|.|||+||||||||||||||||||+
T Consensus 183 ~~~~~r~lEIWNlVFmqy~r~~~g~l~pLp~k~IDTGmGlERla~vlQg~ 232 (232)
T cd00673 183 NEDDDRYLEIWNLVFMQYNRDADGTYRPLPKKIVDTGMGLERLVWVLQGV 232 (232)
T ss_pred cCCCCCEEEEeeeeeeeeeccCCCCCccCCCCeeeCCcCHHHHHHHHcCC
Confidence 89999999999999999999999999999999999999999999999996
No 11
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=100.00 E-value=8.4e-45 Score=380.32 Aligned_cols=226 Identities=29% Similarity=0.430 Sum_probs=205.9
Q ss_pred cccccceEEEEEEeCCeeeeeecCCCeEEEEeeceeEEEccCCeeceeeEEEccCeeEEEEEEEEECCEEEEEEEeecCC
Q 002583 443 WFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGA 522 (904)
Q Consensus 443 ~~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~i~~~~~~~~V~dv~~~~g~i~H~~~~~~~~ 522 (904)
|..+++|+|+.+..+ .|+||+|+|||+|||||+|+|+|.+.++...|+++.+.+..|+|++...
T Consensus 11 y~~e~~~~v~~v~~~-------------~i~ld~T~Fyp~~GGQp~D~G~l~~~~~~~~~~~~~~~~~~I~H~~~~~--- 74 (241)
T COG2872 11 YLKEFEATVVDVEDN-------------EIVLDRTIFYPTGGGQPGDTGTLIWAGGEYVVEDVTKDGEEIVHVLAEH--- 74 (241)
T ss_pred ccccceEEEEEEeCC-------------eEEEEeccccCCCCCCcCCceEEEeCCceEEEEEEEecceEEEEEecCc---
Confidence 567899999998752 6999999999999999999999999999999999999999999998632
Q ss_pred cccCCCCEEEEEechhhhhhhhhhhhHHHHHHHHHHHHhCCceeeecccccCCcEEEEecCCCCCCHHHHHHHHHHHHHH
Q 002583 523 GRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQ 602 (904)
Q Consensus 523 ~~l~~G~~V~~~VD~~rR~~~m~~HTA~HLL~~Al~~vlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~Nei 602 (904)
..+++|++|.++|||+||+.+||+|||+|||++++.+.++ .+..|.++.++..|+||+.+. +++.+.++++++|++
T Consensus 75 ~~~~vG~~V~~~IDW~rRy~~mr~HTa~Hlls~~~~~~~~--~~~~g~~i~~d~~~iD~~~e~--~~~~~~~v~~~~ne~ 150 (241)
T COG2872 75 AKLKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYG--ALTTGFEIGEDYARIDFDGED--TEDEIEEVEALANEL 150 (241)
T ss_pred ccCCCCCEEEEEECcHHHHHHHhhhHHHHHHHHHhhcccc--ceeecceeccccccccccccc--chhhHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999998 467899999999999998543 899999999999999
Q ss_pred HHcCCCeEEEEcCHHHHhhhcCchhhcCCcCC---CCeEEEEecCcccccccCCCCccccceeeeeccCCCccccccccc
Q 002583 603 IKAELDVFSKEATLAEAKCINGLRAVFGEVYP---DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEA 679 (904)
Q Consensus 603 I~~nlpV~~~~~~~eeA~~~~~~~~~~~e~y~---d~VRvV~I~~~~~~~l~~~~~~~~~~~~~e~CgGTHV~nTgeIg~ 679 (904)
|.+|+||...+++++||.++++.+++-...++ ..+|+|+|+ ++++++||||||+||+|||.
T Consensus 151 v~~~~~v~~~~i~~EE~~~~p~~~~~~~~~~~~~~g~iRiV~I~----------------did~qpCgGtHVk~T~EIG~ 214 (241)
T COG2872 151 VKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIRIVEIG----------------DIDVQPCGGTHVKNTGEIGE 214 (241)
T ss_pred HHcCCeeeeeecCHHHHhhCcChhhhcccCCccccceEEEEEEC----------------CeeccCCCCcccCCccceEE
Confidence 99999999999999999999998876653333 379999998 58999999999999999999
Q ss_pred EEEEeeeecCCCceEEEEEechhHH
Q 002583 680 FALLSEEGIAKGIRRITAVTTGLAY 704 (904)
Q Consensus 680 fkI~~~~~~~~G~~RI~~vtG~~A~ 704 (904)
|+|++.++.+++.+||+|.+|.+|.
T Consensus 215 Iki~k~e~k~k~~~Rv~f~~~~~~~ 239 (241)
T COG2872 215 IKILKTEKKGKGNRRVYFTLGERAS 239 (241)
T ss_pred EEEEEEEEecCceEEEEEEeccccc
Confidence 9999999999999999999998764
No 12
>PLN02961 alanine-tRNA ligase
Probab=100.00 E-value=7.2e-44 Score=375.69 Aligned_cols=209 Identities=27% Similarity=0.385 Sum_probs=176.5
Q ss_pred eEEEEeeceeEEEccCCeeceeeEEEccC--eeEEEEEEEEECCEEEEEEEeec----CCcccCCCCEEEEEechhhhhh
Q 002583 469 EVGIVLASSSFYAEQGGQIFDEGFIEGLF--GSFYVRNVQIYGGFVIHIGSLTE----GAGRFSVGEEVICKVDYDRRKL 542 (904)
Q Consensus 469 ~~~vvLD~T~FYpegGGQ~~D~G~i~~~~--~~~~V~dv~~~~g~i~H~~~~~~----~~~~l~~G~~V~~~VD~~rR~~ 542 (904)
.+.|+||+|+|||||||||+|+|+|...+ ..++|.+|++.+|.++|++.+.. +.++|++|++|.++|||+||+.
T Consensus 2 ~~~viLd~T~FYpegGGQp~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~~~~~~~~~~~~l~~G~~V~~~ID~~rR~~ 81 (223)
T PLN02961 2 RIALVLDRTIFHPQGGGQPSDTGRIVISGGDTKFSVQDVRRKDGVVYHYGVFEGSNPESASPFEAGDEVTVTVDESRRKL 81 (223)
T ss_pred CeEEEeCCceEcCCCCCCCCcEEEEEecCCCcEEEEEEEEEECCEEEEEEEecCcccccCCCCCCCCEEEEEECHHHHhh
Confidence 46799999999999999999999997633 36999999999999999986531 0146889999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHH-hCCceeeecccccCCcEEEEecCCCCCCHHH----HHHHHHHHHHHHHcCCCeEEEEcCHH
Q 002583 543 IAPNHTCTHMLNFALREV-LGDHVDQKGSVVLPEKLRFDFSHGKPVDPEH----LRRIESIVNEQIKAELDVFSKEATLA 617 (904)
Q Consensus 543 ~m~~HTA~HLL~~Al~~v-lg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~----L~~IE~~~NeiI~~nlpV~~~~~~~e 617 (904)
+|++|||+|||++||+++ +|..+.+.|+++ +++.++||. ..++.++ +.+||+++|++|++++||++.++|++
T Consensus 82 ~m~~HTa~HLL~~al~~~~~~~~~~~~g~~~-~~~~~v~~~--~~i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~~~~~~ 158 (223)
T PLN02961 82 HSRLHSAGHLLDVCMARVGLGPLEPGKGYHF-PDGPFVEYK--GKIPQGELDSKQDELEAEANELIAEGGKVSAAVLPYD 158 (223)
T ss_pred hhccCcHHHHHHHHHHHcCCCcccccccccc-CCccceeec--ccCCHHHHHhHHHHHHHHHHHHHHcCCceeEEEeCHH
Confidence 999999999999999997 787777788775 467888875 4577655 47999999999999999999999999
Q ss_pred HHhhhcCchhhcCCc-CCCCeEEEEecCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeecCCCceEEE
Q 002583 618 EAKCINGLRAVFGEV-YPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 696 (904)
Q Consensus 618 eA~~~~~~~~~~~e~-y~d~VRvV~I~~~~~~~l~~~~~~~~~~~~~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~ 696 (904)
||+++.+. +.+... ..+.+|+|+|+ +++.++||||||.||++||.|+|++.+ +++|.+||+
T Consensus 159 ea~~~~~~-~~~~~~~~~~~vRiV~I~----------------~~d~~~CgGTHv~nT~eig~i~I~~~~-~~kg~~Rv~ 220 (223)
T PLN02961 159 EAAELCGG-SLPDYIAKDSTPRIVKIG----------------DSPGCPCGGTHVADVSEITSVKVTQIR-VKKGVTRVS 220 (223)
T ss_pred HHHHhcCC-cCCCcCCCCCceEEEEEC----------------CCccCccCCcccCchhccccEEEEEEE-ecCCEEEEE
Confidence 99987442 222211 14679999998 578999999999999999999999986 458999999
Q ss_pred EE
Q 002583 697 AV 698 (904)
Q Consensus 697 ~v 698 (904)
|.
T Consensus 221 ~~ 222 (223)
T PLN02961 221 YT 222 (223)
T ss_pred Ee
Confidence 84
No 13
>KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only]
Probab=100.00 E-value=6.4e-40 Score=338.61 Aligned_cols=364 Identities=22% Similarity=0.281 Sum_probs=284.8
Q ss_pred CeEEEEeeceeEEEccCCeeceeeEEEccCeeEEEEEEEEECCEEEEEEEeecCCcccCCCCEEEEEechhhhhhhhhhh
Q 002583 468 NEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNH 547 (904)
Q Consensus 468 ~~~~vvLD~T~FYpegGGQ~~D~G~i~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~H 547 (904)
+.+.+.|..|++||||||||+|.|++ ..+.|..|.+.|...-|.+. .++.+|.+|...|||+||+++||+|
T Consensus 42 eg~~i~lqdtiLfpegggqp~d~gf~----~~v~V~~VsR~G~~A~H~~~-----~~iePGt~V~V~VD~qkR~D~MQQH 112 (415)
T KOG2105|consen 42 EGYEIELQDTILFPEGGGQPSDSGFL----KIVEVSHVSRFGLHAKHHVN-----DYIEPGTTVEVAVDEQKRMDYMQQH 112 (415)
T ss_pred ecceeeeeeeEeccCCCCCCCccccc----cceeEEEeeccccchhhccC-----CCCCCCCeEEEEecHHHHhHHHHHh
Confidence 45789999999999999999999999 55779999888877777654 6799999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCceeeecccccCCcEE--EEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHH--HHhhhc
Q 002583 548 TCTHMLNFALREVLGDHVDQKGSVVLPEKLR--FDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLA--EAKCIN 623 (904)
Q Consensus 548 TA~HLL~~Al~~vlg~~~~q~Gs~v~~d~~r--~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~e--eA~~~~ 623 (904)
|++||+++.+.++|.-.+ ....++ +++ ++... .++|.|++..||+.+|+.|..-+|+.+.+.+.+ +..+..
T Consensus 113 sGQHLitAvad~~fKlkT--tSWelG--~~~sa~e~~~-~~mTaeqvaaieqsvNe~I~d~~~~~v~E~sl~d~eVeqVS 187 (415)
T KOG2105|consen 113 SGQHLITAVADHLFKLKT--TSWELG--RFRSAIELDT-PSMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVS 187 (415)
T ss_pred cchhHHHHHHHhhhccce--eeeecc--ceeeccccCC-CCccHHHHHHHHHHHHHHHHhccchheeecccCCcchhhcc
Confidence 999999999999987543 222222 333 33332 469999999999999999999999998887664 344443
Q ss_pred CchhhcCCcCCCCeEEEEecCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeecCCCceEEEEEechhH
Q 002583 624 GLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLA 703 (904)
Q Consensus 624 ~~~~~~~e~y~d~VRvV~I~~~~~~~l~~~~~~~~~~~~~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~A 703 (904)
+ +-+++ .-..++|+|.|+ +.|.++||||||+||++|+.|+|++.++-.+|-+-..|+.|.+.
T Consensus 188 ~-~~~~D-~haG~iRvvnI~----------------~vDSN~CCGTHvs~~Sdl~vI~ILgtekg~k~rtN~~f~~GnRV 249 (415)
T KOG2105|consen 188 G-RGLPD-DHAGPIRVVNIE----------------GVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLSGNRV 249 (415)
T ss_pred C-CCCcc-cccCceEEEeec----------------CccCCccccccccchhhcceEEEeeccccccCccceEEEeccHH
Confidence 3 21111 112479999998 57899999999999999999999999988888778889999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCCCccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002583 704 YKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVAT 783 (904)
Q Consensus 704 ~~~~~~~~~~~~~l~~~~~~~~~~i~k~v~~l~~~~~~~~i~~~~~~~l~~~i~~l~~~~~~l~ke~~~~~~~~a~~~~~ 783 (904)
+.+.+.....++.+..+++|.. .+..+++.+++++.+.++|....+...+|...+.
T Consensus 250 ~~~mersh~t~~a~taLLkCga------------------------ed~vEavkk~qnstk~LqKnn~~~lr~LA~~iah 305 (415)
T KOG2105|consen 250 LKWMERSHGTEKALTALLKCGA------------------------EDHVEAVKKLQNSTKILQKNNLNLLRDLAVHIAH 305 (415)
T ss_pred HHHHHHhcchHHHHHHHHhcch------------------------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 9999998888888888888753 3667888899999999999999999999988888
Q ss_pred HHHHHhhcCCCcEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEEeC-CCCeEEEEEecCCcccccccccHHHHHHHH
Q 002583 784 ETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDE-TTNKAVVCAGVPEKSDQSKQLEVSEWLTAA 862 (904)
Q Consensus 784 ~~~~~~~~~~~~~iv~~~~~~~d~~~L~~~~~~l~~~~~~~v~ll~~~~-~~~k~~~~~~v~~~~~~~~~~~a~~~~k~v 862 (904)
++..+..-+|. ++.+.- ..+.+.++.+++.+.. ..+++++...+ .+|-.+++++.+ -+...+...+
T Consensus 306 sL~Ns~d~gG~--vi~~~~-e~~sE~~N~ianei~s--~EtlL~~~~~dek~GgLflLa~~~--------asvetLg~rv 372 (415)
T KOG2105|consen 306 SLRNSPDWGGV--VILHRK-EGDSEFMNIIANEIGS--EETLLFLTVGDEKGGGLFLLAGPP--------ASVETLGPRV 372 (415)
T ss_pred HHhcCcCcCce--EEeehh-hccHHHHHHHhhccCC--eeEEEEEEeeccCCceEEEecCCc--------hhhhhhhHHH
Confidence 77765444443 333333 2478888877776543 23444444433 344566655432 2344677799
Q ss_pred hhhcCCCCCCCCCCCcccccCCcCCHHHHHHHHHHHHHh
Q 002583 863 LQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAM 901 (904)
Q Consensus 863 ~~~~gGkGG~Gk~~~AQG~g~~~~~l~~al~~a~~~~~~ 901 (904)
++.+.|||| |+....||+.++.++--+|.+.+.+|+..
T Consensus 373 ae~LeG~Ga-~K~Gr~QGKaTkmSrrmea~AlLqDYiS~ 410 (415)
T KOG2105|consen 373 AEVLEGKGA-GKKGRFQGKATKMSRRMEAQALLQDYIST 410 (415)
T ss_pred HHHhhcCCC-CcCcccccchhhhhHHHHHHHHHHHHhhc
Confidence 999999999 99999999999998888888888888864
No 14
>PLN02837 threonine-tRNA ligase
Probab=99.91 E-value=1.9e-23 Score=250.11 Aligned_cols=213 Identities=21% Similarity=0.303 Sum_probs=179.1
Q ss_pred CCEEEEEechhhhhhhhhhhhHHHHHHHHHHHHhCCceeeecccccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHcCC
Q 002583 528 GEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAEL 607 (904)
Q Consensus 528 G~~V~~~VD~~rR~~~m~~HTA~HLL~~Al~~vlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nl 607 (904)
-++|.+.+|...|...+.+||++|||++|++++||....+.|+.+ ++++||||+. .++|++++.+||++||++|.+|+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~~-~~g~y~D~~~-~~lt~edl~~IEk~m~~iI~~n~ 106 (614)
T PLN02837 29 PERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWI-ENGFYYDFDM-EPLTDKDLKRIKKEMDRIISRNL 106 (614)
T ss_pred CceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCCEEEEecC-CCCCHHHHHHHHHHHHHHHHcCC
Confidence 368999999999999999999999999999999987767788665 5899999986 58999999999999999999999
Q ss_pred CeEEEEcCHHHHhhhcCch------hhcCCcCCCCeEEEEecCcccccccCCCCccccceeeeeccCCCccccccc--cc
Q 002583 608 DVFSKEATLAEAKCINGLR------AVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREA--EA 679 (904)
Q Consensus 608 pV~~~~~~~eeA~~~~~~~------~~~~e~y~d~VRvV~I~~~~~~~l~~~~~~~~~~~~~e~CgGTHV~nTgeI--g~ 679 (904)
||++.+++++||.+++... .++.....+.||+++|+ +.+.++|+||||+|||+| +.
T Consensus 107 pI~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~~~~~Iriy~ig----------------~~~~D~c~GpHv~sTg~I~~~~ 170 (614)
T PLN02837 107 PLVREEVSREEAQKRIMAINEPYKLEILEGIKEEPITIYHIG----------------EEWWDLCAGPHVERTGKINKKA 170 (614)
T ss_pred CEEEEEecHHHHHHHHHHcCCchhHHHhccCCCCeEEEEEEC----------------CeEEEecCCCCcccccccccce
Confidence 9999999999999875210 11111113469999998 346788999999999999 99
Q ss_pred EEEEeeeec-------CCCceEEEEEechhHHHHHHHHHHHHHHHHHHhccccchhHHHHHH--HHhh-cCCCccCCCch
Q 002583 680 FALLSEEGI-------AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVAS--LKSK-VDGAAIPAPKK 749 (904)
Q Consensus 680 fkI~~~~~~-------~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~~~~~~~~~i~k~v~~--l~~~-~~~~~i~~~~~ 749 (904)
|+|.+.++. +..++||++++.+. .++++++++.++++..++|.+|++++.- |... -+|.++|+|.+
T Consensus 171 ~kl~~~~g~ywrg~~~~~~l~ri~g~~~~~----~~~l~~~~~~~~e~~~rdH~~lg~~l~lf~~~~~~g~G~~~~~p~G 246 (614)
T PLN02837 171 VELESVAGAYWRGDEKNQMLQRIYGTAWES----EEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDDAGGGLVFWHPKG 246 (614)
T ss_pred EEEEEeehhhhcccccCcceEEEEEEecCC----HHHHHHHHHHHHHhhhCCHHHHHHHcCCcccCcCcCCcceEEechH
Confidence 999998773 46799999999985 4567889999999999999999999554 4443 36899999999
Q ss_pred hHHHHHHHHHHHH
Q 002583 750 ADIRAKIALLQNQ 762 (904)
Q Consensus 750 ~~l~~~i~~l~~~ 762 (904)
..+...|.++..+
T Consensus 247 ~~l~~~L~~~~~~ 259 (614)
T PLN02837 247 AIVRHIIEDSWKK 259 (614)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888643
No 15
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.89 E-value=1.7e-22 Score=241.84 Aligned_cols=199 Identities=25% Similarity=0.331 Sum_probs=164.9
Q ss_pred hhhhhhhHHHHHHHHHHHHhCCceeeecccccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHhh
Q 002583 542 LIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKC 621 (904)
Q Consensus 542 ~~m~~HTA~HLL~~Al~~vlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eeA~~ 621 (904)
..+.+|||+|||++|++++||......| +..++++||||+...++|++++.+||++||++|++|+||++..++++||.+
T Consensus 6 ~~~~~hS~~hlL~~A~~~~~~~~~~~~~-~~~~~g~~~d~~~~~~it~e~l~~Ie~~m~~lI~~~~pi~~~~v~~eeA~~ 84 (575)
T PRK12305 6 LEVIRHSAAHVLAQAVQELFPDAKLGIG-PPIEDGFYYDFDVPEPFTPEDLKKIEKKMKKIIKRGLPFEREEVSREEARE 84 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEeC-CCcCCeEEEEeeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHH
Confidence 3468999999999999999987655555 555789999999877899999999999999999999999999999999998
Q ss_pred hcCch----hhcCCcCCCCeEEEEecCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeec-------CC
Q 002583 622 INGLR----AVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AK 690 (904)
Q Consensus 622 ~~~~~----~~~~e~y~d~VRvV~I~~~~~~~l~~~~~~~~~~~~~e~CgGTHV~nTgeIg~fkI~~~~~~-------~~ 690 (904)
++... .++....++.||+++++ ++ .++|+||||+|||+||.|+|+++++. ++
T Consensus 85 ~f~~~~~k~~l~~~~~~~~vri~~ig----------------~~-~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~~ 147 (575)
T PRK12305 85 EFANEPYKLELIDDIPEEGITIYDNG----------------DF-EDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKNP 147 (575)
T ss_pred hCCcChhHHHhhhhcCCCeEEEEEEC----------------CE-EEECCCCCCCCccCCceeEEEEEcceEECCCCCCc
Confidence 76421 12222233469999998 33 47899999999999999999998554 78
Q ss_pred CceEEEEEechhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHH--h-hcCCCccCCCchhHHHHHHHHHHHH
Q 002583 691 GIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLK--S-KVDGAAIPAPKKADIRAKIALLQNQ 762 (904)
Q Consensus 691 G~~RI~~vtG~~A~~~~~~~~~~~~~l~~~~~~~~~~i~k~v~~l~--~-~~~~~~i~~~~~~~l~~~i~~l~~~ 762 (904)
+++||++++.+.. ++++++++.++++.+++|.+|++++.-|. . ..+|.+.|+|.+..+.+.|.++..+
T Consensus 148 ~l~Ri~g~~~~~~----~~l~~~~~~~~e~~~~dh~~l~~~~~l~~~~~~~~~G~~~~~p~~~~~~~~l~~~~~~ 218 (575)
T PRK12305 148 QLQRIYGTAWETK----EELKEYLKRLEEAKKRDHRKLGKELDLFSFPDEIGPGLPVWHPKGAIIRREIEDYLRK 218 (575)
T ss_pred ceEEEEEEecCCH----HHHHHHHHHHHHhhhccHHHHHHhcCccccccccCCcceEEeccHHHHHHHHHHHHHH
Confidence 9999999999864 45778889999999999999999866554 2 2578999999999998888776544
No 16
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.89 E-value=2.4e-22 Score=242.90 Aligned_cols=199 Identities=22% Similarity=0.310 Sum_probs=166.9
Q ss_pred hhhhhhHHHHHHHHHHHHhCCceeeecccccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHhhh
Q 002583 543 IAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCI 622 (904)
Q Consensus 543 ~m~~HTA~HLL~~Al~~vlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eeA~~~ 622 (904)
...+||++|||.+|++++||......|+.+ ++++||||+...++|++++.+||++||++|.+|+||+...++++||.++
T Consensus 73 ~iy~hS~~hlL~~A~~~~~~~~~~~i~~~~-~~g~y~d~~~~~~it~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~~ 151 (639)
T PRK12444 73 EIARHSAAHILAQAVKRLYGDVNLGVGPVI-ENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKL 151 (639)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEeCCcC-CCeEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHH
Confidence 467999999999999999998666667554 7899999998778999999999999999999999999999999999998
Q ss_pred cCch------hhcCCcCC-CCeEEEEecCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeec-------
Q 002583 623 NGLR------AVFGEVYP-DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI------- 688 (904)
Q Consensus 623 ~~~~------~~~~e~y~-d~VRvV~I~~~~~~~l~~~~~~~~~~~~~e~CgGTHV~nTgeIg~fkI~~~~~~------- 688 (904)
+... .++..... +.|+++++++ ++++|+||||+|||+|+.|+|+++++.
T Consensus 152 F~~~~~~~K~~ll~~~~~~~~v~iy~~~~-----------------~~D~c~G~hv~sTg~ik~f~l~~~~~g~~~g~~~ 214 (639)
T PRK12444 152 FQEMNDRLKLELLEAIPSGESITLYKQGE-----------------FVDLCRGPHLPSTGYLKAFQLTHVSGAYWRGDSN 214 (639)
T ss_pred HhhcCCchHHHHHhcCCCCCeEEEEEECC-----------------EEEEcCCcCCCCCCCCceeEEEEEcceEEcCCCC
Confidence 6531 11111111 3588988872 578899999999999999999998876
Q ss_pred CCCceEEEEEechhHHHHHHHHHHHHHHHHHHhccccchhHHHHH--HHHhhcCCCccCCCchhHHHHHHHHHHHHH
Q 002583 689 AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVA--SLKSKVDGAAIPAPKKADIRAKIALLQNQV 763 (904)
Q Consensus 689 ~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~~~~~~~~~i~k~v~--~l~~~~~~~~i~~~~~~~l~~~i~~l~~~~ 763 (904)
+++++||++++.+. .++++.+++.++++.+++|.+|++.+. .+.+.++|.++|+|.+..+.+.|+++..+.
T Consensus 215 ~~~l~Ri~g~a~~~----~~~l~~~~~~~~~~~~~dH~~l~~~~~l~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~ 287 (639)
T PRK12444 215 NQVLQRIYGVAFSS----QKELEEYLHFVEEAAKRNHRKLGKELELFMFSEEAPGMPFYLPKGQIIRNELEAFLREI 287 (639)
T ss_pred CcceEEEEEEecCC----HHHHHHHHHHHHHhccCCHHHHHHHcCCcccccccCcceEEeeCHHHHHHHHHHHHHHH
Confidence 68999999999885 446788899999999999999999865 666678999999999999988877765443
No 17
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.87 E-value=1.8e-21 Score=235.76 Aligned_cols=215 Identities=22% Similarity=0.299 Sum_probs=172.0
Q ss_pred CCCCEEEEEechhhhhhhhhhhhHHHHHHHHHHHHhCCceeeecccccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHc
Q 002583 526 SVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKA 605 (904)
Q Consensus 526 ~~G~~V~~~VD~~rR~~~m~~HTA~HLL~~Al~~vlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~ 605 (904)
..+.+|+..-....+-..+.+||++|||++|++++||......| +..++++||||+...++|++++.+||++||++|++
T Consensus 52 ~~d~~Vefi~~~~~~g~~~y~hS~~hll~~A~~~~~~~~~~~~~-~~~~~g~y~d~~~~~~lt~e~l~~Ie~~m~~iI~~ 130 (638)
T PRK00413 52 EEDASLEIITAKDEEGLEIIRHSAAHLLAQAVKRLYPDAKLTIG-PVIENGFYYDFDRERPFTPEDLEAIEKEMKEIIKE 130 (638)
T ss_pred cCCCceeeeeccchhhHHHHhhhHHHHHHHHHHHHcCCceEEEC-CccCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHhc
Confidence 33444554444555567788999999999999999986555555 45578999999987789999999999999999999
Q ss_pred CCCeEEEEcCHHHHhhhcCch------hhcCCcCC-CCeEEEEecCcccccccCCCCccccceeeeeccCCCcccccccc
Q 002583 606 ELDVFSKEATLAEAKCINGLR------AVFGEVYP-DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAE 678 (904)
Q Consensus 606 nlpV~~~~~~~eeA~~~~~~~------~~~~e~y~-d~VRvV~I~~~~~~~l~~~~~~~~~~~~~e~CgGTHV~nTgeIg 678 (904)
|+||....++++||.+++... .++..... +.||+++++ + .+++||||||+|||+|+
T Consensus 131 ~~pi~~~~v~~~eA~~~f~~~~~~~k~~ll~~~~~~~~v~iy~~~----------------~-~~d~c~G~hv~~Tg~i~ 193 (638)
T PRK00413 131 NYPIEREVVSREEAIELFKDRGEPYKVELIEEIPEDEEISLYRQG----------------E-FVDLCRGPHVPSTGKIK 193 (638)
T ss_pred CCCEEEEEecHHHHHHHHHhcCCccHHHHhhcCCCCCeEEEEEEC----------------C-EEEECCCCCCCcccCCc
Confidence 999999999999999976431 11111112 268888887 2 36899999999999999
Q ss_pred cEEEEeeeec-------CCCceEEEEEechhHHHHHHHHHHHHHHHHHHhccccchhHHHHHH--HHhhcCCCccCCCch
Q 002583 679 AFALLSEEGI-------AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVAS--LKSKVDGAAIPAPKK 749 (904)
Q Consensus 679 ~fkI~~~~~~-------~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~~~~~~~~~i~k~v~~--l~~~~~~~~i~~~~~ 749 (904)
.|+|+++++. +++++||++++.+.. ++...+.+.++++..++|..+++++.. |.+..+|...|+|.+
T Consensus 194 ~f~i~~~~~g~~l~~~~~~~l~Ri~g~~~~~~----~~l~~~~~~~~e~~~~~h~~l~~~~~~~~~~~~~~G~~~~lp~~ 269 (638)
T PRK00413 194 AFKLLKVAGAYWRGDSKNKMLQRIYGTAFADK----KELDAYLHRLEEAKKRDHRKLGKELDLFHFQEEAPGLPFWHPKG 269 (638)
T ss_pred eeEEEEEcceEEcCCCcchheEEEEeeecCCH----HHHHHHHHHHHHhccccHHHHHHhcCEEEecCCCCcceEEcccH
Confidence 9999998554 789999999999865 356778888999999999999998764 566678999999999
Q ss_pred hHHHHHHHHHHHH
Q 002583 750 ADIRAKIALLQNQ 762 (904)
Q Consensus 750 ~~l~~~i~~l~~~ 762 (904)
..+.+.|.++..+
T Consensus 270 ~~~~~~i~~~~~~ 282 (638)
T PRK00413 270 WTIRRELERYIRR 282 (638)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888776543
No 18
>PLN02908 threonyl-tRNA synthetase
Probab=99.83 E-value=9.3e-20 Score=221.24 Aligned_cols=229 Identities=19% Similarity=0.213 Sum_probs=179.9
Q ss_pred EEccCCeeceeeEEEccCeeEEEEEEEEECCEEEEEEEeecCCcccCCCCEEEEEechhhhhhhhhhhhHHHHHHHHHHH
Q 002583 480 YAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALRE 559 (904)
Q Consensus 480 YpegGGQ~~D~G~i~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTA~HLL~~Al~~ 559 (904)
-+.-.|++.|.-+....++.++.++... . .-.-+.+||++|||.+|+++
T Consensus 88 ~a~Vng~l~dL~~~l~~d~~le~l~~~~------------------~-------------eg~~~y~hS~ahlL~~A~~~ 136 (686)
T PLN02908 88 IAQVDGVLWDMTRPLEGDCKLKLFKFDD------------------D-------------EGRDTFWHSSAHILGEALEL 136 (686)
T ss_pred EEEECCEEeecCccccCCCeeEEecccc------------------H-------------HHHHHHHHHHHHHHHHHHHH
Confidence 3444678888777766655555543221 1 12457899999999999999
Q ss_pred HhCCceeeecccccC-CcEEEEecCC-CCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHhhhcCch----hhcCCcC
Q 002583 560 VLGDHVDQKGSVVLP-EKLRFDFSHG-KPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLR----AVFGEVY 633 (904)
Q Consensus 560 vlg~~~~q~Gs~v~~-d~~r~Df~~~-~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eeA~~~~~~~----~~~~e~y 633 (904)
+||.. ...|.++++ +++||||... .++|++++.+||++|+++|.+++||+...++++||.++|... .+... .
T Consensus 137 ~~~~~-l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI~~~~pi~r~~v~~eeA~e~F~~~~~K~~ll~~-~ 214 (686)
T PLN02908 137 EYGCK-LCIGPCTTRGEGFYYDAFYGDRTLNEEDFKPIEARAEKAVKEKQPFERIEVTREEALEMFSENKFKVEIIND-L 214 (686)
T ss_pred HhCCe-EEecCccccCCcEEEEeecCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHhhCCcHHHHHhh-C
Confidence 99754 467767754 7999998743 579999999999999999999999999999999999876421 11111 2
Q ss_pred C--CCeEEEEecCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeec-------CCCceEEEEEechhHH
Q 002583 634 P--DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIRRITAVTTGLAY 704 (904)
Q Consensus 634 ~--d~VRvV~I~~~~~~~l~~~~~~~~~~~~~e~CgGTHV~nTgeIg~fkI~~~~~~-------~~G~~RI~~vtG~~A~ 704 (904)
+ +.++|.++++ .+++|+||||+|||+|+.|+|+++++. +..++||++++.+...
T Consensus 215 ~~~~~v~vY~~g~-----------------~~D~c~Gphv~sTg~ik~f~l~~~~~~~~lg~~~~~~lqRi~G~sfp~~~ 277 (686)
T PLN02908 215 PEDATITVYRCGP-----------------LVDLCRGPHIPNTSFVKAFACLKASSAYWRGDVDRESLQRVYGISFPDKK 277 (686)
T ss_pred CCCCeeEEEEECC-----------------EEEecCCCCCCCCCccceeEEEEecceEEcCCCcchhhEEEeeeccCChH
Confidence 2 3578888872 577899999999999999999988754 4689999999999654
Q ss_pred HHHHHHHHHHHHHHHHhccccchhHHH--HHHHHhhcCCCccCCCchhHHHHHHHHHHHH
Q 002583 705 KAFEAACSLEKEVDDASKIEGSLLEKT--VASLKSKVDGAAIPAPKKADIRAKIALLQNQ 762 (904)
Q Consensus 705 ~~~~~~~~~~~~l~~~~~~~~~~i~k~--v~~l~~~~~~~~i~~~~~~~l~~~i~~l~~~ 762 (904)
++.++++.++++..++|..|+++ +..|.+..+|.++|+|.+..+.+.|.++..+
T Consensus 278 ----~l~~~~~~~~e~~~rdH~~lg~~~~lf~~~~~~~G~~~~lP~g~~i~~~l~~~~~~ 333 (686)
T PLN02908 278 ----LLKEYKHRIEEAKKRDHRLLGQKQELFFFHELSPGSCFFLPHGARIYNKLMDFIRE 333 (686)
T ss_pred ----HHHHHHhhhhhccccCHHHHHHhcCCeeecCCCCcceEEechHHHHHHHHHHHHHH
Confidence 46788888999999999999998 4456667799999999999999888877544
No 19
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.83 E-value=1.1e-19 Score=217.08 Aligned_cols=197 Identities=24% Similarity=0.274 Sum_probs=163.7
Q ss_pred hhhHHHHHHHHHHHHhCCceeeecccccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHhhhcCc
Q 002583 546 NHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL 625 (904)
Q Consensus 546 ~HTA~HLL~~Al~~vlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eeA~~~~~~ 625 (904)
+||++|||++|+++++|....+.|+.+ ++++||||+...++|++++.+||++||++|.+++||....++++||.+++..
T Consensus 1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i-~~g~~~df~~~~~~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f~~ 79 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPDVKLAIGPVV-EDGFYYDFELDRSFTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAFKV 79 (563)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCc-CCCceecccCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHHHhc
Confidence 599999999999999998777888777 5689999997778999999999999999999999999999999999997640
Q ss_pred -----hhhcCCc-CCCCeEEEEecCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeec-------CCCc
Q 002583 626 -----RAVFGEV-YPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGI 692 (904)
Q Consensus 626 -----~~~~~e~-y~d~VRvV~I~~~~~~~l~~~~~~~~~~~~~e~CgGTHV~nTgeIg~fkI~~~~~~-------~~G~ 692 (904)
..++.+. +.+.|+++.++ ++++++|+||||+|||.|+.|+|.++... +..+
T Consensus 80 ~~~~k~~Ll~~~~~~~~v~vy~~g----------------~~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~~l 143 (563)
T TIGR00418 80 LEPYKLELLDEIPNGVKRTPYGWG----------------KAFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNKML 143 (563)
T ss_pred cChhHHHHHhcCCCCCeEEEEEeC----------------CEEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCCce
Confidence 1122322 34679999987 45889999999999999999999987664 4688
Q ss_pred eEEEEEechhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHh--h-cCCCccCCCchhHHHHHHHHHHHHH
Q 002583 693 RRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKS--K-VDGAAIPAPKKADIRAKIALLQNQV 763 (904)
Q Consensus 693 ~RI~~vtG~~A~~~~~~~~~~~~~l~~~~~~~~~~i~k~v~~l~~--~-~~~~~i~~~~~~~l~~~i~~l~~~~ 763 (904)
+||++++.+.. +++.++++.++++..++|.++++++.-+.- . .+|...|+|.+..+.+.|+++..+.
T Consensus 144 ~Ri~g~~~~~~----~~l~~~~~~~~~~~~~dH~~l~~~~~l~~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~ 213 (563)
T TIGR00418 144 QRIYGTAWADK----KQLAAYLLRLEEAKKRDHRKLGKELELFSFEPEIGPGLPFWLPKGATIRNLLEDFVRQK 213 (563)
T ss_pred EeeeeccCCCH----HHHHHHHHhhhhhhcCCHHHHHHhCCCcccCcccCCcceEEeccHHHHHHHHHHHHHHH
Confidence 99999998854 456778888899999999999998654432 2 5789999999999988887775443
No 20
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.9e-16 Score=185.60 Aligned_cols=196 Identities=24% Similarity=0.324 Sum_probs=157.9
Q ss_pred hhhhhhhHHHHHHHHHHHHhCCceeeecccccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHhh
Q 002583 542 LIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKC 621 (904)
Q Consensus 542 ~~m~~HTA~HLL~~Al~~vlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eeA~~ 621 (904)
.-..+||++|||..|+.++++. ...| .+.++++|+||+...++|++++.+||+.|+++|.++++|....+++++|++
T Consensus 26 ~~~~rhs~ah~l~~av~~l~p~--~~~g-p~ie~gfyyd~~~~~~~~~~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~~ 102 (589)
T COG0441 26 LEIIRHSCAHVLAQAVKRLYPD--VTIG-PVIEEGFYYDFDVKEPITPEDLLKIEKEMKEIAKENLPIEREVVSREEARA 102 (589)
T ss_pred hhhhhhHHHHHHHHHHHHhCCC--cccc-CcccceeEEeeccCCCCCHHHHHHHHHHHHHHHHhcCceEEEEecHHHHHH
Confidence 4457899999999999999998 5677 677799999999888899999999999999999999999999999999999
Q ss_pred hcCchhhc-CCcCCCCeEEEEecCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeec-------CCCce
Q 002583 622 INGLRAVF-GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIR 693 (904)
Q Consensus 622 ~~~~~~~~-~e~y~d~VRvV~I~~~~~~~l~~~~~~~~~~~~~e~CgGTHV~nTgeIg~fkI~~~~~~-------~~G~~ 693 (904)
.|+--+.+ =+..++++.+.+ .+...++|-|+||++||.| .|++++.++. ++..+
T Consensus 103 ~f~~yK~~~i~~~~~~~s~y~-----------------~~~~~dlc~gph~~~t~~i-~fkl~~~~~ayw~g~~~~~~l~ 164 (589)
T COG0441 103 PFGPYKAELIDCKGHPLSEYS-----------------QGEFVDLCRGPHVPSTGKI-AFKLLKLAGAYWRGDENNEMLQ 164 (589)
T ss_pred HhhhhHHHHHhcCCCCceeEe-----------------cCccccccCCCCCCccceE-EEEEEEecchhhccCCCCccee
Confidence 76510000 000112222222 2347899999999999999 9999988754 67889
Q ss_pred EEEEEechhHHHHHHHHHHHHHHHHHHhccccchhHHHHHHH--Hh-hcCCCccCCCchhHHHHHHHHHHHH
Q 002583 694 RITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASL--KS-KVDGAAIPAPKKADIRAKIALLQNQ 762 (904)
Q Consensus 694 RI~~vtG~~A~~~~~~~~~~~~~l~~~~~~~~~~i~k~v~~l--~~-~~~~~~i~~~~~~~l~~~i~~l~~~ 762 (904)
||+.++.. ...+++.+++.+++...++|+++++++..| .. .-+|.++|+|++..+++.++++...
T Consensus 165 riygta~~----~~~~l~~~l~~~eea~krdHrklg~el~LF~~~~~~~~G~~~~~pkG~~ir~~le~y~~~ 232 (589)
T COG0441 165 RIYGTAFA----DKKELEAYLKRLEEAKKRDHRKLGKELDLFSFSPEEGPGLPFWHPKGATIRNLLEDYVRT 232 (589)
T ss_pred EEeccccC----CHHHHHHHHhhhhhccCCchHhHHHhhcceeeccccCCcceEECCCcccHHHHHHHHHHH
Confidence 99999985 344577788889999999999999986654 42 4589999999999999999888644
No 21
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=99.31 E-value=2.5e-12 Score=101.07 Aligned_cols=44 Identities=52% Similarity=0.869 Sum_probs=37.6
Q ss_pred eEEEEecCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeecCCCceEEE
Q 002583 637 VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 696 (904)
Q Consensus 637 VRvV~I~~~~~~~l~~~~~~~~~~~~~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~ 696 (904)
||||+|+ +++.++||||||+|||+|+.|+|++.++.++|++||+
T Consensus 1 vRvv~i~----------------~~~~~~C~GtHv~~T~~i~~~~i~~~~~~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIG----------------DFDVDLCGGTHVPNTGEIGHFKILKGESKGKGLRRIY 44 (44)
T ss_dssp EEEEEET----------------TTEEEEESS---SBGGGG-CEEEEEEEEEETTEEEEE
T ss_pred CEEEEEC----------------CeeEECCCCcccCChhEECcEEEEEeEEEcCCcEEeC
Confidence 6999998 5799999999999999999999999999999999996
No 22
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=98.97 E-value=5.4e-10 Score=87.82 Aligned_cols=44 Identities=55% Similarity=0.857 Sum_probs=40.0
Q ss_pred eEEEEecCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeecCCCceEEE
Q 002583 637 VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 696 (904)
Q Consensus 637 VRvV~I~~~~~~~l~~~~~~~~~~~~~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~ 696 (904)
+|+|.|+ +++.++||||||+||++||.|+|++.++...+++||+
T Consensus 1 vriv~i~----------------~~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~~~Ri~ 44 (44)
T smart00863 1 VRVVSIG----------------DFDVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRIY 44 (44)
T ss_pred CEEEEEC----------------CEEEECCCCcccCChhhCcEEEEEEEeeeecCeEEeC
Confidence 5888988 5789999999999999999999999999888888984
No 23
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=98.72 E-value=3.3e-08 Score=117.22 Aligned_cols=100 Identities=14% Similarity=0.180 Sum_probs=85.8
Q ss_pred ceeeeeccC-CCcccccccccEEEEeeeec----CCCceEEEEEechhHHHHHHHHHHHHHHHHHHhccccchhHHHHHH
Q 002583 660 SISAELCGG-THLSNTREAEAFALLSEEGI----AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVAS 734 (904)
Q Consensus 660 ~~~~e~CgG-THV~nTgeIg~fkI~~~~~~----~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~~~~~~~~~i~k~v~~ 734 (904)
+..+++|.| |||+|||.|+.|+|++.++. ++.++||++++.+. .++++++++.++++.+++|++|++++.-
T Consensus 74 ~~~~~~~~~~ph~~~t~~~~~fkl~~~~~~g~~~~~~l~Riyg~~f~~----~~~l~~~~~~~eea~~rdHr~lg~~l~l 149 (545)
T PRK14799 74 GNKVSIIEDKVSISTNLNPKYFEILNISTHHPNPNEQYVRIRGVAFET----EEQLKDYLTWLEKAEETDHRLIGEKLDL 149 (545)
T ss_pred cCceeecCCCCCCCCCCCcceEEEEEeccCCCccCceeEEEEEeecCC----HHHHHHHHHHHHhcccCCHHHHHHHcCC
Confidence 457899999 99999999999999999886 47899999999985 4567888999999999999999999654
Q ss_pred --HHhh-cCCCccCCCchhHHHHHHHHHHHHH
Q 002583 735 --LKSK-VDGAAIPAPKKADIRAKIALLQNQV 763 (904)
Q Consensus 735 --l~~~-~~~~~i~~~~~~~l~~~i~~l~~~~ 763 (904)
|.+. .+|.++|+|.+..+++.|.++.++.
T Consensus 150 f~~~~~~~~G~~~~lP~G~~i~~~L~~~~r~~ 181 (545)
T PRK14799 150 FSFHEEAGSGLVLFHPKGQTIRNELIAFMREI 181 (545)
T ss_pred cccccccCCcceEEcChHHHHHHHHHHHHHHH
Confidence 4444 6899999999999999988876443
No 24
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=3e-06 Score=95.12 Aligned_cols=134 Identities=19% Similarity=0.237 Sum_probs=98.2
Q ss_pred hhhhhHHHHHHHHHHHHhCCceeeecccccCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHhhhc
Q 002583 544 APNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCIN 623 (904)
Q Consensus 544 m~~HTA~HLL~~Al~~vlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eeA~~~~ 623 (904)
..+||++|+|..|+.+.+|.+ ...|.. .++++|+|+ . ..++.+
T Consensus 68 vfwhssahvlg~a~e~~~g~~-lc~Gpp-~~~gf~yd~-~-~~i~~~--------------------------------- 110 (560)
T KOG1637|consen 68 VFWHSSAHVLGEALEQEYGAH-LCIGPP-IEEGFYYDM-L-DEISSN--------------------------------- 110 (560)
T ss_pred eeeehhhhHhhHHHHHhcCee-EeeCCC-CcCceehhh-h-cccccc---------------------------------
Confidence 478999999999999999976 467854 458898876 3 211111
Q ss_pred CchhhcCCcCCCCeEEEEecCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeecCCCceEEEEEechhH
Q 002583 624 GLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLA 703 (904)
Q Consensus 624 ~~~~~~~e~y~d~VRvV~I~~~~~~~l~~~~~~~~~~~~~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~A 703 (904)
.||. | + ++||++||.|+.|+|++-++.= -+.-+++.
T Consensus 111 --------d~~~------~---------------------e---~phi~~tg~ika~k~~~nss~y-----w~~~sfp~- 146 (560)
T KOG1637|consen 111 --------DFPS------I---------------------E---APHIRHTGKIKAFKILKNSSAY-----WEGDSFPD- 146 (560)
T ss_pred --------cccc------c---------------------c---cccccccceeeeeeeeccchhh-----hccccCCC-
Confidence 1210 1 1 2899999999999999765540 11115553
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhHHH--HHHHHhhcCCCccCCCchhHHHHHHHHHHH
Q 002583 704 YKAFEAACSLEKEVDDASKIEGSLLEKT--VASLKSKVDGAAIPAPKKADIRAKIALLQN 761 (904)
Q Consensus 704 ~~~~~~~~~~~~~l~~~~~~~~~~i~k~--v~~l~~~~~~~~i~~~~~~~l~~~i~~l~~ 761 (904)
-.+.+++.+..+++..++|++|+++ +..+.+..+|.++++|.+..++++|-.+.+
T Consensus 147 ---~k~~k~~~~~~~Ea~~rdHRkig~~qeLfff~~lSPGS~FflP~G~~iyN~Lv~fir 203 (560)
T KOG1637|consen 147 ---PKQLKEWEKFQEEAKKRDHRKIGKEQELFFFHELSPGSCFFLPHGTRIYNTLVDFIR 203 (560)
T ss_pred ---HHHHHHHHhhchhhhhhhhhhhhhhhhheeeccCCCcceeeccCcchHHHHHHHHHH
Confidence 3356677777888999999999997 666777789999999999999999988764
No 25
>PF02272 DHHA1: DHHA1 domain; InterPro: IPR003156 This domain is often found adjacent to the DHH domain, found in the RecJ-like phosphoesterase family IPR001667 from INTERPRO, and is called DHHA1 for DHH associated domain. DHHA1 is diagnostic of DHH subfamily 1 members []. This domain is also found in alanyl tRNA synthetase e.g. P00957 from SWISSPROT, suggesting that it may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.; GO: 0003676 nucleic acid binding; PDB: 1IR6_A 2ZVF_F 3G98_B 3DEV_A 2ZXR_A 2ZXO_A 2ZXP_A.
Probab=97.80 E-value=2.6e-05 Score=66.86 Aligned_cols=65 Identities=26% Similarity=0.375 Sum_probs=50.9
Q ss_pred cEEEEEEeCCCCeEEEEEecCCcccccccccHH-HHHHHHhhhcCCCCCCCCCCCcccccCCcCCHHHHHHHHHH
Q 002583 824 PVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVS-EWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAE 897 (904)
Q Consensus 824 ~v~ll~~~~~~~k~~~~~~v~~~~~~~~~~~a~-~~~k~v~~~~gGkGG~Gk~~~AQG~g~~~~~l~~al~~a~~ 897 (904)
++++++.. ++++.+.+.+++ +++.. +|++.++..++|+|| |.+.+|||+++++.+++++++.+.+
T Consensus 3 ~~i~~~~~--~~~~~~s~rs~~------~~~~~~~~~~~~~~~~~G~GG-Gh~~aAg~~~~~~~~l~~~~~~~~e 68 (68)
T PF02272_consen 3 PVIVFSEE--DGKIKVSARSSK------GVDDKGEILKELAEKLGGKGG-GHPDAAGGSIPKPEKLEEFLKALEE 68 (68)
T ss_dssp EEEEEEEE--SSTEEEEEEESS------SSTHH-HHHHHCHHHGTCEEE-EESSEEEEEESCGGHHHHHHHHHHH
T ss_pred EEEEEEEc--CCEEEEEEEECC------chhhHHHHHHHHHHHcCCCCC-CCHHHhcccCCCchhHHHHHHHhcC
Confidence 55666643 456666666544 34555 999999999999999 9999999999998889999887754
No 26
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=93.59 E-value=0.12 Score=53.42 Aligned_cols=122 Identities=25% Similarity=0.276 Sum_probs=74.4
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcchhhhhcccccccccc-----HHHHHHHHHHHchhccCCCCCceEEEEeCCC
Q 002583 22 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYF-----KNEAIEWAWELLTKVYRLPADRLYATYFGGD 96 (904)
Q Consensus 22 ~r~~~~QkCiR~ggkhnDl~~VG~t~rH~TfFEMlGn~SfgdYf-----K~eai~~awe~lt~~~~l~~~rl~vT~~~~~ 96 (904)
-|+.-.++|.|.. -..-+ .+|..-|.|+|-..+|... -.+++..++++|. .+|++.+-.++. .
T Consensus 76 ~~lfeig~vfr~e-----~~~~~--~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~-~lg~~~~~~~~~--~-- 143 (211)
T cd00768 76 LRLAEIGPAFRNE-----GGRRG--LRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLR-ALGIKLDIVFVE--K-- 143 (211)
T ss_pred EEEEEEcceeecC-----CCccc--cccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHH-HcCCCcceEEEe--c--
Confidence 3788899999962 11111 3677889999999998643 3678889999985 678743222210 1
Q ss_pred CcCCCCCcHHHHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeeccccc
Q 002583 97 EKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQF 176 (904)
Q Consensus 97 ~~~~~~~D~e~~~iw~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~ 176 (904)
....||. +.+|+|.+|+++...+ |..||+++-...-
T Consensus 144 ----------------------------~~~~~~~----~~~g~~~~i~~~~~~~------------~~~eig~~g~~~~ 179 (211)
T cd00768 144 ----------------------------TPGEFSP----GGAGPGFEIEVDHPEG------------RGLEIGSGGYRQD 179 (211)
T ss_pred ----------------------------Cchhhcc----ccCCceEEEEEEccCC------------CeEEEeeceeecC
Confidence 0112332 5789999999975322 2355655543322
Q ss_pred c---------cCCCCccccCCCCccccCchHHHH
Q 002583 177 N---------RESDGSLKPLPAKHVDTGLGFERL 201 (904)
Q Consensus 177 ~---------~~~~g~~~~Lp~~~iDTGmGlERl 201 (904)
+ .+++++.. .| .+|=.|+|+||+
T Consensus 180 ~~~~~~~l~~~~~~~~~~-~p-~~~~~~~~~~R~ 211 (211)
T cd00768 180 EQARAADLYFLDEALEYR-YP-PTIGFGLGLERL 211 (211)
T ss_pred chhHhhhhheeccccccc-Cc-eeecCccCccCC
Confidence 2 12334332 44 466667999995
No 27
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=87.38 E-value=8.4 Score=46.61 Aligned_cols=97 Identities=15% Similarity=0.195 Sum_probs=58.9
Q ss_pred cEEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEEeCCCCeEEEEEecCCcccccccccHHHHHHHHhhhcCCCCCCCC
Q 002583 795 PFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGK 874 (904)
Q Consensus 795 ~~iv~~~~~~~d~~~L~~~~~~l~~~~~~~v~ll~~~~~~~k~~~~~~v~~~~~~~~~~~a~~~~k~v~~~~gGkGG~Gk 874 (904)
+++|.. .++.....+-.+|..+.+..+.++++++..++. .+ -+... ...++|+.++++.+...++++|| |=
T Consensus 325 ~~~v~~-~~~~~~Gv~GivA~rl~~~~~kP~ivls~~~~~-~~---kgS~R---s~~g~nl~~~l~~~~~~~l~~~G-GH 395 (539)
T TIGR00644 325 SVIVVA-GENWHPGVLGIVASRLAETFNKPVIVLAIDEGK-GA---KGSAR---SISGIDLYDLLSELREALFLKFG-GH 395 (539)
T ss_pred cEEEEE-eCCCCCchHHHHHHHHHHHHCCCEEEEEEcCCc-eE---EEeec---cCCCCcHHHHHHHHHHhhccccC-Ch
Confidence 444433 223444456667778887667778887754322 11 11111 12469999999998885677776 53
Q ss_pred CCCcccccCCcCCHHHHHHHHHHHHHh
Q 002583 875 GGLASGQGTDAAQVTPAMDLAAEFAAM 901 (904)
Q Consensus 875 ~~~AQG~g~~~~~l~~al~~a~~~~~~ 901 (904)
.+|=|-.-..++++++.+.+.+++.+
T Consensus 396 -~~AaG~~i~~~~~~~f~~~l~~~~~~ 421 (539)
T TIGR00644 396 -AMAAGLTLKRENLEEFREKLEEKFKK 421 (539)
T ss_pred -HHcCeeEEcHHHHHHHHHHHHHHHHh
Confidence 34434334567888888887776654
No 28
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=85.31 E-value=1 Score=50.88 Aligned_cols=41 Identities=27% Similarity=0.406 Sum_probs=28.7
Q ss_pred CCCCCeeEEeeecccccccCCCCcccc--CCCCcccc--------CchHHHHHHHHhCCCC
Q 002583 160 NDDPTCIEIWNIVFIQFNRESDGSLKP--LPAKHVDT--------GLGFERLTSILQNKMS 210 (904)
Q Consensus 160 ~~~~~~lEiwNlVFmq~~~~~~g~~~~--Lp~~~iDT--------GmGlERl~~vlqg~~s 210 (904)
|....||||-. -|-+.| |..-.||. |||+||||++.-|.+.
T Consensus 274 ck~~~WiEilG----------~Gmv~p~vl~~~gid~~~~~G~AfG~GleRlaMl~ygi~D 324 (339)
T PRK00488 274 CKGTGWLEILG----------CGMVHPNVLRNVGIDPEEYSGFAFGMGIERLAMLKYGIDD 324 (339)
T ss_pred cCCCCceEEec----------cCccCHHHHHHcCCCcccceEEEEeecHHHHHHHHhCCcH
Confidence 34456899873 344444 55556664 9999999999988753
No 29
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=84.45 E-value=0.19 Score=60.65 Aligned_cols=95 Identities=24% Similarity=0.228 Sum_probs=67.0
Q ss_pred CCcHHHHHH-HH---hc--CCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeecc--
Q 002583 102 APDNEARDI-WL---KF--LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVF-- 173 (904)
Q Consensus 102 ~~D~e~~~i-w~---~~--~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVF-- 173 (904)
.--+||-+. |. +. +|++||.- ....| -|.||+|=|.++ |+ .|.-+++|
T Consensus 97 YfK~eai~~awe~lt~~l~i~~~~l~v---t~~~~----d~ea~~~w~~~~---g~--------------~~~~i~~~~~ 152 (552)
T PF01411_consen 97 YFKEEAIEYAWEFLTEVLGIPPDRLYV---TVFEW----DGEAGEIWEKIV---GG--------------PEERILVFGK 152 (552)
T ss_dssp S-HHHHHHHHHHHHHCTTT--GGGEEE---EEECC----ECCCCCCCCECC---TT--------------ECCCEEEE-C
T ss_pred ccHHHHHHHHHHHHHhhcCCChHhEEE---EEeCC----chhHHHHHHHhc---CC--------------CHHHeEecCC
Confidence 445566543 32 22 88888865 23333 248999999873 33 67778899
Q ss_pred -cccccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHH
Q 002583 174 -IQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFD 222 (904)
Q Consensus 174 -mq~~~~~~g~~~~Lp~~~iDTGmGlERl~~vlqg~~s~ydtd~f~~~~~ 222 (904)
|+|....++ ....|..-||+|+|+||..|..++.++.|+. .|..|.+
T Consensus 153 ~~nfw~~g~~-gpcgpcseI~~d~G~e~~~~~~~~~~~~~~~-~~~eiwn 200 (552)
T PF01411_consen 153 KDNFWEMGDT-GPCGPCSEIFYDRGEERGCWDSQGTPTCDDD-RFLEIWN 200 (552)
T ss_dssp CEEEEESSTS-EEEEEEEEEEEEEECCCHHHHHHSTSSHHHH-HECCCCC
T ss_pred CCceEECCCC-CCCCCCEEEEECCCcccCccccccccccccc-cHHHHHH
Confidence 999976554 6789999999999999999999999998765 5655543
No 30
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=83.07 E-value=0.61 Score=50.07 Aligned_cols=154 Identities=25% Similarity=0.423 Sum_probs=70.6
Q ss_pred ccccccCCCCCCCCCCCCCCCc-chhhhhccccccccccHHHHHHHHHHHchhccCCCCCceEEEEeCCCCcCCCCCcHH
Q 002583 28 QKCIRAGGKHNDLDDVGKDTYH-HTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNE 106 (904)
Q Consensus 28 QkCiR~ggkhnDl~~VG~t~rH-~TfFEMlGn~SfgdYfK~eai~~awe~lt~~~~l~~~rl~vT~~~~~~~~~~~~D~e 106 (904)
|-|+=.. -.|++ ||--..| +|||--||.=...--|-+-+.. =--..||-.|+||+ -||.=---++ |.-+.
T Consensus 15 ~GC~i~q--PyD~e-vGAGT~~P~Tflr~Lgpepw~vaYVqPsrR----P~DGRYGeNPNRLq-~y~QfQVilK-PsP~n 85 (284)
T PF02091_consen 15 QGCIILQ--PYDIE-VGAGTFHPATFLRALGPEPWNVAYVQPSRR----PTDGRYGENPNRLQ-HYYQFQVILK-PSPDN 85 (284)
T ss_dssp TT-EE------SS---SSGGGSHHHHTTTSSSS-EEEEEEEEEE-----GGG--TTTSSS--S-EEEEEEEEEE-S--TT
T ss_pred CCCEEEC--Ccccc-cccccCCHHHHHHhcCCCCccccccccCCC----CCCCccCCCchHhh-hhheeEEEEc-CCCcc
Confidence 5555442 15666 5654444 7888888865553111000000 00024788888885 3331000000 11222
Q ss_pred HHHHHH-hc-----CCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCC
Q 002583 107 ARDIWL-KF-----LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRES 180 (904)
Q Consensus 107 ~~~iw~-~~-----~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~~~ 180 (904)
.-++.. ++ -|.+|=++|= +|| |+-=.-|--|-==|+--| | +||=-.-+ |.+ .
T Consensus 86 iq~lYL~SL~~lGId~~~hDIRFV-EDn-WEsPtLGAwGlGWEVWld---G--------------MEITQfTY--FQQ-v 143 (284)
T PF02091_consen 86 IQELYLESLEALGIDPKEHDIRFV-EDN-WESPTLGAWGLGWEVWLD---G--------------MEITQFTY--FQQ-V 143 (284)
T ss_dssp HHHHHHHHHHHCT--CCCS-EEEE-EE--EEETTTTEEEEEEEEEET---T--------------CEEEEEEE--EEE-E
T ss_pred HHHHHHHHHHHhCCCccccceeEe-ecC-CCCCcccccccccEEEEC---C--------------EEEEEeee--eee-e
Confidence 333333 33 3566767773 555 553222555555566543 1 66654332 222 3
Q ss_pred CCccccCCCCccccCchHHHHHHHHhCCCCCccc
Q 002583 181 DGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDT 214 (904)
Q Consensus 181 ~g~~~~Lp~~~iDTGmGlERl~~vlqg~~s~ydt 214 (904)
.| + ++..-.+.-=+||||||+.|||+.++||.
T Consensus 144 GG-i-~~~pv~~EITYGLERiamylQ~vdnv~dl 175 (284)
T PF02091_consen 144 GG-I-DCKPVSVEITYGLERIAMYLQGVDNVYDL 175 (284)
T ss_dssp TT-E-E-SS--EEEEEEHHHHHHHHCT-SSGGGS
T ss_pred CC-c-cccccceehhhhHHHHHHHHhCCCeeEee
Confidence 33 3 46666788889999999999999999997
No 31
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=80.91 E-value=0.83 Score=48.46 Aligned_cols=154 Identities=28% Similarity=0.448 Sum_probs=84.2
Q ss_pred ccccccccCCCCCCCCCCCCCCCc-chhhhhcccccccc-ccHHHHHHHHHHHch-hccCCCCCceEEEEeCCCCcCCCC
Q 002583 26 NTQKCIRAGGKHNDLDDVGKDTYH-HTFFEMLGNWSFGD-YFKNEAIEWAWELLT-KVYRLPADRLYATYFGGDEKAGLA 102 (904)
Q Consensus 26 ~~QkCiR~ggkhnDl~~VG~t~rH-~TfFEMlGn~Sfgd-YfK~eai~~awe~lt-~~~~l~~~rl~vT~~~~~~~~~~~ 102 (904)
+.|-|+=... -|++ ||--..| +||.--||-=-++- |--- . .-=| -.||-.|+||. .||.=--.+.=.
T Consensus 19 ~~qGC~i~Qp--yD~e-vGAGT~hPaTfLralGpePw~aAYVqP-----S-RRP~DGRYGenPNRlq-~yyQfQVilKPs 88 (298)
T COG0752 19 AEQGCTILQP--YDME-VGAGTFHPATFLRALGPEPWNAAYVQP-----S-RRPTDGRYGENPNRLQ-HYYQFQVIIKPS 88 (298)
T ss_pred HHcCCEEecc--cccc-cccCcCChHHHHHhcCCCccceeeecc-----C-CCCCCCCCCCCchhhh-hheeEEEEecCC
Confidence 3466765532 5776 6665555 88888887644431 1000 0 0001 24888888885 343211111112
Q ss_pred CcHHHHHHHH-hc-----CCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeeccccc
Q 002583 103 PDNEARDIWL-KF-----LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQF 176 (904)
Q Consensus 103 ~D~e~~~iw~-~~-----~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~ 176 (904)
||. -.++.. ++ =|.+|=+||= +|| ||-=.-|--|-==|+--| | +||=- |+=|
T Consensus 89 P~N-iQeLYL~SL~~lGid~~~HDIRFV-EDn-WE~PTlGawGlGWEVWld---G--------------MEvTQ--FTYF 146 (298)
T COG0752 89 PDN-IQELYLGSLEALGIDPLEHDIRFV-EDN-WENPTLGAWGLGWEVWLD---G--------------MEVTQ--FTYF 146 (298)
T ss_pred Ccc-HHHHHHHHHHHcCCChhhcceeee-ccC-CCCCcccccccceeEEEc---C--------------eeeee--eehh
Confidence 222 233333 22 4666777873 455 664334667766676654 1 56543 2223
Q ss_pred ccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccc
Q 002583 177 NRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDT 214 (904)
Q Consensus 177 ~~~~~g~~~~Lp~~~iDTGmGlERl~~vlqg~~s~ydt 214 (904)
.+ ..| + ++..-.+.-=+||||||+.+||+.++||.
T Consensus 147 QQ-vGG-i-ec~pV~~EITYGlERlAmYiQ~vdnVydl 181 (298)
T COG0752 147 QQ-VGG-L-ECKPVSGEITYGLERLAMYIQGVDNVYDL 181 (298)
T ss_pred hh-hCC-e-eccceeeeeehhHHHHHHHHhCccceeEE
Confidence 32 334 3 34444566679999999999999999996
No 32
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=79.87 E-value=4.2 Score=43.70 Aligned_cols=156 Identities=26% Similarity=0.415 Sum_probs=88.2
Q ss_pred ccccccccCCCCCCCCCCCCCCCc-chhhhhccccccccccHHHHHHHHHHHchhccCCCCCceEEEEeCCCCcCCCCCc
Q 002583 26 NTQKCIRAGGKHNDLDDVGKDTYH-HTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPD 104 (904)
Q Consensus 26 ~~QkCiR~ggkhnDl~~VG~t~rH-~TfFEMlGn~SfgdYfK~eai~~awe~lt~~~~l~~~rl~vT~~~~~~~~~~~~D 104 (904)
..|.|+=.. -.|++ ||--..| +||+--||-=...--|-+-.. .=--..||-.|+||+ .||.=---++=.||
T Consensus 18 a~~GC~i~q--PyD~E-vGAGT~~P~Tflr~Lgpepw~vaYvqPsR----RP~DGRYGeNPNRLq-~y~QfQVilKPsP~ 89 (283)
T PRK09348 18 ADQGCVILQ--PYDME-VGAGTFHPATFLRALGPEPWNAAYVQPSR----RPTDGRYGENPNRLQ-HYYQFQVILKPSPD 89 (283)
T ss_pred HHCCCEEEC--Ccccc-cccccCCHHHHHHhcCCCccccccccCCC----CCCCCCcCCCchhhh-hheeeEEEEcCCCc
Confidence 346776653 26777 6665555 899999886443211100000 000125999999996 44421101111233
Q ss_pred HHHHHHHH-hc-----CCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeeccccccc
Q 002583 105 NEARDIWL-KF-----LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNR 178 (904)
Q Consensus 105 ~e~~~iw~-~~-----~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~ 178 (904)
+ .-++.. ++ -|.+|=++|= +|| ||-=.-|--|-==|+--| | +||=-. +=|.+
T Consensus 90 n-iQelYL~SL~~lGid~~~hDIRFV-EDn-WEsPTLGAwGlGWEVWld---G--------------MEITQF--TYFQQ 147 (283)
T PRK09348 90 N-IQELYLGSLEALGIDPLEHDIRFV-EDN-WESPTLGAWGLGWEVWLD---G--------------MEVTQF--TYFQQ 147 (283)
T ss_pred c-HHHHHHHHHHHhCCCccccceeEe-ecC-CCCCcccccccceEEEEC---C--------------eeeeee--eeeee
Confidence 3 333433 33 4777878873 555 653223666655666643 1 666533 22222
Q ss_pred CCCCccccCCCCccccCchHHHHHHHHhCCCCCccc
Q 002583 179 ESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDT 214 (904)
Q Consensus 179 ~~~g~~~~Lp~~~iDTGmGlERl~~vlqg~~s~ydt 214 (904)
..| + ++..-.+.-=+||||||+.|||+.|+||.
T Consensus 148 -vGG-i-~~~pv~~EITYGLERiamylQ~vd~v~dl 180 (283)
T PRK09348 148 -VGG-I-ECKPVTGEITYGLERLAMYLQGVDNVYDL 180 (283)
T ss_pred -eCC-e-eccccceeeehhHHHHHHHHhCCCceeee
Confidence 334 3 45556777889999999999999999996
No 33
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=77.66 E-value=5.4 Score=43.10 Aligned_cols=156 Identities=26% Similarity=0.422 Sum_probs=87.2
Q ss_pred ccccccccCCCCCCCCCCCCCCCc-chhhhhccccccccccHHHHHHHHHHHchhccCCCCCceEEEEeCCCCcCCCCCc
Q 002583 26 NTQKCIRAGGKHNDLDDVGKDTYH-HTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPD 104 (904)
Q Consensus 26 ~~QkCiR~ggkhnDl~~VG~t~rH-~TfFEMlGn~SfgdYfK~eai~~awe~lt~~~~l~~~rl~vT~~~~~~~~~~~~D 104 (904)
..|-|+=.. -.|++ ||--..| +||+--||-=...--|-+-.. .=--..||-.|+||+ .||.=---++=.||
T Consensus 15 a~~GC~i~Q--PyD~E-vGAGT~hPaTflralgpepw~vAYVqPsR----RP~DGRYGeNPNRLq-~yyQfQVilKPsP~ 86 (293)
T TIGR00388 15 ANQGCLIVQ--PYDME-KGAGTMHPMTFLRSLGPEPWAVAYVEPSR----RPTDGRYGENPNRLQ-HYYQFQVVIKPSPD 86 (293)
T ss_pred HHCCCEEEc--Ccccc-cccccCCHHHHHHhcCCCcceeccccCCC----CCCCCCCCCCchhhh-heeeeEEEECCCCc
Confidence 346676553 26777 6765555 899998886444311100000 000025999999996 44421111111233
Q ss_pred HHHHHHHH-hc-----CCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeeccccccc
Q 002583 105 NEARDIWL-KF-----LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNR 178 (904)
Q Consensus 105 ~e~~~iw~-~~-----~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~ 178 (904)
+ .-++.. ++ -|.+|=+||= +|| ||-=.-|--|-==|+--| | +||=- |+=|.+
T Consensus 87 n-iQelYL~SL~~lGid~~~hDIRFV-EDn-WEsPTLGAwGlGWEVWld---G--------------MEITQ--FTYFQQ 144 (293)
T TIGR00388 87 N-IQELYLDSLRALGIDPTEHDIRFV-EDN-WENPTLGAWGLGWEVWLD---G--------------MEVTQ--FTYFQQ 144 (293)
T ss_pred c-HHHHHHHHHHHhCCCccccCeeEe-ecC-CCCCcccccccccEEEEC---C--------------eeeee--eeeeee
Confidence 3 333333 33 5677778873 555 653223666655666643 1 66643 222332
Q ss_pred CCCCccccCCCCccccCchHHHHHHHHhCCCCCccc
Q 002583 179 ESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDT 214 (904)
Q Consensus 179 ~~~g~~~~Lp~~~iDTGmGlERl~~vlqg~~s~ydt 214 (904)
..| + ++..-.+.-=+||||||+.|||+.|+||.
T Consensus 145 -vGG-i-~~~pv~~EITYGLERiaMylQ~vd~v~dl 177 (293)
T TIGR00388 145 -VGG-L-ECKPVSVEITYGLERLAMYIQGVENVYDL 177 (293)
T ss_pred -eCC-e-eccccceeeehhHHHHHHHHhCCCeeeee
Confidence 333 3 34445677789999999999999999996
No 34
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=76.94 E-value=2.7 Score=40.16 Aligned_cols=24 Identities=29% Similarity=0.536 Sum_probs=20.7
Q ss_pred HHHHHHHchhccCCCCCceEEEEe
Q 002583 70 IEWAWELLTKVYRLPADRLYATYF 93 (904)
Q Consensus 70 i~~awe~lt~~~~l~~~rl~vT~~ 93 (904)
-.---++|+++||||++|+|+.|+
T Consensus 78 s~~i~~~l~~~LgIp~dRiYI~f~ 101 (113)
T PTZ00450 78 TPRITAAITKECGIPAERIYVFYY 101 (113)
T ss_pred HHHHHHHHHHHcCCCcccEEEEEE
Confidence 344568899999999999999997
No 35
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=74.56 E-value=7.2 Score=41.93 Aligned_cols=155 Identities=26% Similarity=0.452 Sum_probs=87.7
Q ss_pred cccccccCCCCCCCCCCCCCCCc-chhhhhccccccccccHHHHHHHHHHHchhccCCCCCceEEEEeCCCCcCCCCCcH
Q 002583 27 TQKCIRAGGKHNDLDDVGKDTYH-HTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDN 105 (904)
Q Consensus 27 ~QkCiR~ggkhnDl~~VG~t~rH-~TfFEMlGn~SfgdYfK~eai~~awe~lt~~~~l~~~rl~vT~~~~~~~~~~~~D~ 105 (904)
.|-|+=.. -.|++ ||--..| +|||--||.=...--|-+-.. .=--..||-.|+||+ .||.=---++=.||+
T Consensus 15 ~~GC~i~q--PyD~E-vGAGT~hPaTflr~Lgpepw~vAYVqPsr----RP~DGRYGeNPNRLq-~y~QfQViiKPsP~n 86 (279)
T cd00733 15 SQGCLIIQ--PYDME-VGAGTFHPATFLRALGPEPWNVAYVEPSR----RPTDGRYGENPNRLQ-HYYQFQVIIKPSPDN 86 (279)
T ss_pred HCCCEEEc--Ccccc-cccccCCHHHHHHhcCCCcceeccccCCC----CCCCCCcCCCchhhh-hheeeEEEECCCCcc
Confidence 46676553 26777 6665555 899999986444311100000 000025999999996 444211011112333
Q ss_pred HHHHHHH-hc-----CCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeecccccccC
Q 002583 106 EARDIWL-KF-----LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRE 179 (904)
Q Consensus 106 e~~~iw~-~~-----~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~~ 179 (904)
.-++.. ++ =|.+|=++|= +|| ||-=.-|--|-==|+--| | +||=-. +=|.+
T Consensus 87 -iQelYL~SL~~lGid~~~hDIRFV-EDn-WEsPTLGAwGLGWEVWld---G--------------MEITQF--TYFQQ- 143 (279)
T cd00733 87 -IQELYLESLEALGINPKEHDIRFV-EDN-WESPTLGAWGLGWEVWLD---G--------------MEVTQF--TYFQQ- 143 (279)
T ss_pred -HHHHHHHHHHHhCCCccccCeeEe-ecC-CCCCcccccccccEEEEC---C--------------eeeeee--eeeee-
Confidence 333433 33 3677777873 555 653223666655666644 1 666533 22222
Q ss_pred CCCccccCCCCccccCchHHHHHHHHhCCCCCccc
Q 002583 180 SDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDT 214 (904)
Q Consensus 180 ~~g~~~~Lp~~~iDTGmGlERl~~vlqg~~s~ydt 214 (904)
..| + ++..-.+.-=+||||||+.|||+.|+||.
T Consensus 144 vGG-i-~~~pv~~EiTYGLERiamylQ~vd~v~dl 176 (279)
T cd00733 144 VGG-I-PCKPISVEITYGLERIAMYLQGVDNVYDI 176 (279)
T ss_pred eCC-e-eccccceeeehhHHHHHHHHhCCCceecc
Confidence 334 3 45556777789999999999999999996
No 36
>KOG1759 consensus Macrophage migration inhibitory factor [Defense mechanisms]
Probab=72.11 E-value=4 Score=38.81 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.3
Q ss_pred HHHHHchhccCCCCCceEEEEeC
Q 002583 72 WAWELLTKVYRLPADRLYATYFG 94 (904)
Q Consensus 72 ~awe~lt~~~~l~~~rl~vT~~~ 94 (904)
--.|+|.++|+|||+|+|++||.
T Consensus 79 ~l~~il~~~L~l~~~rv~I~f~d 101 (115)
T KOG1759|consen 79 ALTEILEKELSLDPDRVYIKFYD 101 (115)
T ss_pred HHHHHHHHHhCCCCCeEEEEEec
Confidence 34688999999999999999983
No 37
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=71.25 E-value=10 Score=48.56 Aligned_cols=156 Identities=25% Similarity=0.372 Sum_probs=89.4
Q ss_pred ccccccccCCCCCCCCCCCCCCCc-chhhhhccccccccccHHHHHHHHHHHchhccCCCCCceEEEEeCCCCcCCCCCc
Q 002583 26 NTQKCIRAGGKHNDLDDVGKDTYH-HTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPD 104 (904)
Q Consensus 26 ~~QkCiR~ggkhnDl~~VG~t~rH-~TfFEMlGn~SfgdYfK~eai~~awe~lt~~~~l~~~rl~vT~~~~~~~~~~~~D 104 (904)
..|-|+=... .|++ ||--..| +||+--||.=.+.--|-+-+.. =--..||-.|+||+ .||.=---+. |.-
T Consensus 19 ~~~gc~~~qp--~~~e-~gagt~~p~t~~~~l~~~~~~~ayv~p~~r----p~d~ryg~npnrl~-~~~q~qvi~k-p~p 89 (1000)
T PRK14908 19 SEQGCIIHQG--YDLE-VGAGTFNPATFLRVLGPEPWRVAYVEPSRR----PDDGRYGQNPNRLQ-TYTQFQVILK-PVP 89 (1000)
T ss_pred HHCCCEEECC--cccc-cccCcCCHHHHHhhcCCCCCcccccCCCCC----CCCCCcCCCchhhh-hheeeEEEEC-CCC
Confidence 3467776542 6777 6765555 8999999975553211110000 00125999999997 5552110111 222
Q ss_pred HHHHHHHH-hc-----CCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeeccccccc
Q 002583 105 NEARDIWL-KF-----LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNR 178 (904)
Q Consensus 105 ~e~~~iw~-~~-----~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~ 178 (904)
+..-++.. ++ -|.+|=++|= +|| |+-=.-|--|===|+--| | +||=-.-| |.
T Consensus 90 ~~~q~~yl~sl~~~gi~~~~~dirfv-ed~-we~p~lga~glgwevw~~---g--------------meitqfty--fq- 147 (1000)
T PRK14908 90 GNPQELYLESLKAIGIDLRDHDIRFV-HDD-WENPTIGAWGLGWEVWLD---G--------------MEITQFTY--FQ- 147 (1000)
T ss_pred ccHHHHHHHHHHHcCCCccccceeEe-ecC-CCCCcccccccccEEEEC---C--------------eeeeeeee--eh-
Confidence 23344443 33 3556777773 565 553223666655666543 1 66653322 22
Q ss_pred CCCCccccCCCCccccCchHHHHHHHHhCCCCCccc
Q 002583 179 ESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDT 214 (904)
Q Consensus 179 ~~~g~~~~Lp~~~iDTGmGlERl~~vlqg~~s~ydt 214 (904)
...| + ++..-.+.-=+|||||++.|||+.|.||.
T Consensus 148 q~gg-~-~~~~~~~eitygler~~m~~q~~~~~~~~ 181 (1000)
T PRK14908 148 QAGG-K-PLDPISGEITYGIERIAMYLQKVNHFKDI 181 (1000)
T ss_pred hcCC-e-eccccceeeeccHHHHHHHHhCCCeeeee
Confidence 2333 3 46666778889999999999999999986
No 38
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=70.25 E-value=7.2 Score=42.91 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=24.0
Q ss_pred CccccCchHHHHHHHHhCCCCCcccccc
Q 002583 190 KHVDTGLGFERLTSILQNKMSNYDTDVF 217 (904)
Q Consensus 190 ~~iDTGmGlERl~~vlqg~~s~ydtd~f 217 (904)
+|==.|+|+|||++++-|..+.=|+-+|
T Consensus 237 p~~G~glGieRL~m~~~g~~~Irdv~~F 264 (269)
T cd00669 237 PHGGLGIGIDRLIMLMTNSPTIREVIAF 264 (269)
T ss_pred CCceEeeHHHHHHHHHhCCCcHHHcccC
Confidence 5888999999999999999988776444
No 39
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=68.19 E-value=3.4 Score=47.57 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=54.9
Q ss_pred ccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCcchhchhhhhhh----hhhhhhe---eeee
Q 002583 191 HVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVV----ADHIRTL---SFAI 263 (904)
Q Consensus 191 ~iDTGmGlERl~~vlqg~~s~ydtd~f~~~~~~i~~~~~~~~y~g~~~~~~~~~~~~~~rvi----aDH~R~~---~f~i 263 (904)
.|+||-||=-|-+|--|..+.|-..+|.|+.+...++....+.+.++..- ++..+-..++ ||-+-+- +=+|
T Consensus 72 digtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vI--nkrStev~vg~~~RadI~v~e~fdtEli 149 (636)
T KOG1501|consen 72 DIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVI--NKRSTEVKVGGSSRADIAVREDFDTELI 149 (636)
T ss_pred EccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeee--ccccceeeecCcchhhhhhHhhhhhhhh
Confidence 58899999999999999999999999999999999987765555444211 0111111222 3333333 3378
Q ss_pred cCCCccCC
Q 002583 264 ADGSCPGN 271 (904)
Q Consensus 264 ~DG~~Psn 271 (904)
..|++||=
T Consensus 150 geGalps~ 157 (636)
T KOG1501|consen 150 GEGALPSL 157 (636)
T ss_pred ccccchhH
Confidence 99999984
No 40
>PF01422 zf-NF-X1: NF-X1 type zinc finger; InterPro: IPR000967 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a domain presumed to be a zinc binding domain. The following pattern describes the zinc finger: C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C where X can be any amino acid, and numbers in brackets indicate the number of residues. The two position can be either His or Cys. This domain is found in the human transcriptional repressor NK-X1, a repressor of HLA-DRA transcription; the Drosophila shuttle craft protein, which plays an essential role during the late stages of embryonic neurogenesis; and a yeast hypothetical protein YNL023C. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=67.81 E-value=2.3 Score=27.94 Aligned_cols=9 Identities=56% Similarity=1.678 Sum_probs=7.6
Q ss_pred CCCCcCcee
Q 002583 135 TGPCGPCSE 143 (904)
Q Consensus 135 ~GpcGPcsE 143 (904)
.|||+||++
T Consensus 12 ~G~C~pC~~ 20 (20)
T PF01422_consen 12 PGPCPPCPQ 20 (20)
T ss_pred CCcCCCCCC
Confidence 599999974
No 41
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=62.29 E-value=7.9 Score=36.76 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEeC
Q 002583 66 KNEAIEWAWELLTKVYRLPADRLYATYFG 94 (904)
Q Consensus 66 K~eai~~awe~lt~~~~l~~~rl~vT~~~ 94 (904)
|++-.+---++|.+.||+||+|+||.+++
T Consensus 74 k~~l~~~i~~~l~~~lgi~~~rv~I~f~~ 102 (116)
T PTZ00397 74 NSSIAAAITKILASHLKVKSERVYIEFKD 102 (116)
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 45566666788999999999999999975
No 42
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=59.18 E-value=15 Score=43.32 Aligned_cols=20 Identities=40% Similarity=0.541 Sum_probs=16.3
Q ss_pred ccccCchHHHHHHHHhCCCC
Q 002583 191 HVDTGLGFERLTSILQNKMS 210 (904)
Q Consensus 191 ~iDTGmGlERl~~vlqg~~s 210 (904)
++==|||+||||++.-|.+.
T Consensus 317 V~AFGIGVERlAMi~ygi~D 336 (533)
T TIGR00470 317 VMNLGLGVERLAMILYGYED 336 (533)
T ss_pred eEEEEecHHHHHHHHhCCcH
Confidence 36669999999999988543
No 43
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=57.62 E-value=11 Score=42.75 Aligned_cols=120 Identities=24% Similarity=0.277 Sum_probs=67.0
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcchhh-hhc-----cccccccccHHHHHHHHHHHchhccCCC-CCceEEEEeC
Q 002583 22 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFF-EML-----GNWSFGDYFKNEAIEWAWELLTKVYRLP-ADRLYATYFG 94 (904)
Q Consensus 22 ~r~~~~QkCiR~ggkhnDl~~VG~t~rH~TfF-EMl-----Gn~SfgdYfK~eai~~awe~lt~~~~l~-~~rl~vT~~~ 94 (904)
-|+.+..+|.| ||-.+ ..|+-.| .+= -|.||.| -.-.--+|+.+-+|.+ +=|.--+||-
T Consensus 193 ~k~~~~grvyR-----~D~~D----aTHs~~FhQiEGlvvd~~~s~~~-----Lkg~L~~f~~~~fg~~~~vRfrpsyFP 258 (335)
T COG0016 193 IKIFSPGRVYR-----NDTVD----ATHSPEFHQIEGLVVDKNISFAD-----LKGTLEEFAKKFFGEDVKVRFRPSYFP 258 (335)
T ss_pred ceEecccceec-----CCCCC----cccchheeeeEEEEEeCCccHHH-----HHHHHHHHHHHhcCCCcceEeecCCCC
Confidence 48999999999 58443 5665444 333 4667654 2222224555556566 4555555552
Q ss_pred CCCcCCCCCcHHHHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeeccc
Q 002583 95 GDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFI 174 (904)
Q Consensus 95 ~~~~~~~~~D~e~~~iw~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFm 174 (904)
| | =|+-|++..+.+ +..||||.+.=-.
T Consensus 259 -----------------------------------F----T---EPS~Evdv~~~~-----------~~~WlEi~G~Gmv 285 (335)
T COG0016 259 -----------------------------------F----T---EPSAEVDVYCPG-----------CGGWLEILGCGMV 285 (335)
T ss_pred -----------------------------------C----C---CCeEEEEEEEcC-----------CCCEEEEeccccc
Confidence 2 2 368888865422 1358999864211
Q ss_pred ccccCCCCccccCCCCcc--ccCchHHHHHHHHhCCCC
Q 002583 175 QFNRESDGSLKPLPAKHV--DTGLGFERLTSILQNKMS 210 (904)
Q Consensus 175 q~~~~~~g~~~~Lp~~~i--DTGmGlERl~~vlqg~~s 210 (904)
.=|--..--+ .|...+ ==|||+||||++.-|.+.
T Consensus 286 ~P~VL~~~G~--~~~~~~GfAfGlGlERlAMLkygI~D 321 (335)
T COG0016 286 HPNVLEAVGI--DPEEYSGFAFGLGLERLAMLKYGIPD 321 (335)
T ss_pred CHHHHHhcCC--CCCcceEEEEeecHHHHHHHHhCCcH
Confidence 1110000011 222223 569999999999988753
No 44
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=55.71 E-value=22 Score=42.42 Aligned_cols=124 Identities=19% Similarity=0.220 Sum_probs=72.9
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcchhhhhccccccc-cccHHHHHHHHHHHchhccCCCCCceEEEEeCCCCcCC
Q 002583 22 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAG 100 (904)
Q Consensus 22 ~r~~~~QkCiR~ggkhnDl~~VG~t~rH~TfFEMlGn~Sfg-dYfK~eai~~awe~lt~~~~l~~~rl~vT~~~~~~~~~ 100 (904)
-|..+..+|.| ||=.+ ..|+-.|-=++=+-+| +.=-.+-+..+-+|+.+ +|+..=|+.-+||-
T Consensus 358 ~k~fsigrVfR-----~d~~D----atH~~eFhQ~Eg~vi~~~~s~~~L~~~l~~f~~~-lG~~~~RfrP~yfP------ 421 (494)
T PTZ00326 358 KKYFSIDRVFR-----NETLD----ATHLAEFHQVEGFVIDRNLTLGDLIGTIREFFRR-IGITKLRFKPAFNP------ 421 (494)
T ss_pred ceEEecCCEec-----CCCCC----CCcCceeEEEEEEEEeCCCCHHHHHHHHHHHHHh-cCCCceEEecCCCC------
Confidence 38899999999 46433 4454444333222222 11124677888888855 58865566556652
Q ss_pred CCCcHHHHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeeccccccc-C
Q 002583 101 LAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNR-E 179 (904)
Q Consensus 101 ~~~D~e~~~iw~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~-~ 179 (904)
| | =|+.||+..+.+ +.+||||-|.=..+=+- .
T Consensus 422 ----------------------f-----------T---EPS~Ev~v~~~~-----------~gkWIEIgg~Gm~rpevL~ 454 (494)
T PTZ00326 422 ----------------------Y-----------T---EPSMEIFGYHPG-----------LKKWVEVGNSGIFRPEMLR 454 (494)
T ss_pred ----------------------C-----------C---CCeeEEEEEecC-----------CCcEEEEeCcCccCHHHHH
Confidence 1 2 357899865532 13599999875544111 1
Q ss_pred CCCccccCCCCccccCchHHHHHHHHhCCCC
Q 002583 180 SDGSLKPLPAKHVDTGLGFERLTSILQNKMS 210 (904)
Q Consensus 180 ~~g~~~~Lp~~~iDTGmGlERl~~vlqg~~s 210 (904)
+-| + |=+...+==||||||+|++.-|.+.
T Consensus 455 ~~G-i-~~~~~~~A~GlGleRlaMi~ygi~D 483 (494)
T PTZ00326 455 PMG-F-PEDVTVIAWGLSLERPTMIKYGIKN 483 (494)
T ss_pred hcC-C-CCcceEEEEEecHHHHHHHHhCCcH
Confidence 112 1 1122256779999999999988654
No 45
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=53.98 E-value=11 Score=35.87 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=17.7
Q ss_pred HHHHHchhccCCCCCceEEEEeC
Q 002583 72 WAWELLTKVYRLPADRLYATYFG 94 (904)
Q Consensus 72 ~awe~lt~~~~l~~~rl~vT~~~ 94 (904)
---+||.+.||||++|+||.|+.
T Consensus 78 ~i~~~l~~~LgIp~~Riyi~f~d 100 (114)
T PF01187_consen 78 AITEFLEEELGIPPDRIYINFHD 100 (114)
T ss_dssp HHHHHHHHHHT--GGGEEEEEEE
T ss_pred HHHHHHHHHhCCCcCceEEEEEE
Confidence 34578889999999999999974
No 46
>smart00438 ZnF_NFX Repressor of transcription.
Probab=48.97 E-value=7.4 Score=27.34 Aligned_cols=11 Identities=45% Similarity=1.304 Sum_probs=9.0
Q ss_pred CCCCcCceeEE
Q 002583 135 TGPCGPCSEIH 145 (904)
Q Consensus 135 ~GpcGPcsEi~ 145 (904)
+|||+||.+..
T Consensus 12 ~G~C~pC~~~~ 22 (26)
T smart00438 12 PGPCPPCKQXX 22 (26)
T ss_pred CCcCcCccccc
Confidence 49999999654
No 47
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=44.69 E-value=4.5e+02 Score=32.29 Aligned_cols=95 Identities=13% Similarity=0.066 Sum_probs=54.5
Q ss_pred EEEEEeccCCCHHHHHHHHHHHHhccCCcEEEEEEeCCCCeEEEEEecCCcccccccccHHHHHHHHhh----hcCCCCC
Q 002583 796 FCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQ----PLKGRCG 871 (904)
Q Consensus 796 ~iv~~~~~~~d~~~L~~~~~~l~~~~~~~v~ll~~~~~~~k~~~~~~v~~~~~~~~~~~a~~~~k~v~~----~~gGkGG 871 (904)
++|..-+ +-..-.+=.+|..+.+..+.++++++..+ ++. +-+...+ ..++|+.+.++.... .+-.-||
T Consensus 355 ~ivv~~~-~wh~GViGIVAsrl~e~y~rP~ivls~~~-~g~---~kGS~RS---i~g~~l~~aL~~~~~~~~~ll~~fGG 426 (575)
T PRK11070 355 GLAMYHP-EWHQGVVGILASRIKERFHRPVIAFAPAG-DGT---LKGSGRS---IQGLHMRDALERLDTLYPGLILKFGG 426 (575)
T ss_pred EEEEEeC-CCCccHHHHHHHHHHHHHCCCEEEEEEcC-CCe---EEEEEeC---CCCCcHHHHHHHhhhcccchhhccCC
Confidence 4444333 44556777788889886677888887532 232 1222222 136899988887542 4443333
Q ss_pred CCCCCCcccccCCcCCHHHHHHHHHHHHHh
Q 002583 872 KGKGGLASGQGTDAAQVTPAMDLAAEFAAM 901 (904)
Q Consensus 872 ~Gk~~~AQG~g~~~~~l~~al~~a~~~~~~ 901 (904)
-.+|=|=.-..++++++.+.+.+++.+
T Consensus 427 ---H~~AaG~ti~~e~l~~f~~~l~~~~~~ 453 (575)
T PRK11070 427 ---HAMAAGLSLEEDKFELFQQRFGELVTE 453 (575)
T ss_pred ---hHHhCcceeCHHHHHHHHHHHHHHHHH
Confidence 233433333667888877777666543
No 48
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=42.72 E-value=21 Score=42.39 Aligned_cols=118 Identities=25% Similarity=0.319 Sum_probs=67.1
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcchhh-hhcc-----ccccccccHHHHHHHHHHHchhccCCCCCceEEEEeCC
Q 002583 22 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFF-EMLG-----NWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGG 95 (904)
Q Consensus 22 ~r~~~~QkCiR~ggkhnDl~~VG~t~rH~TfF-EMlG-----n~SfgdYfK~eai~~awe~lt~~~~l~~~rl~vT~~~~ 95 (904)
.|+.+.-+|.| ||= .|+.|+-.| .|=| |-||+| -+...-+|+.+ +|+..=|..-+||-
T Consensus 343 ~k~fsigrVfR-----~d~----iDatH~~eFhQ~EG~vvd~~~t~~~-----L~g~l~~f~~~-lg~~~~RfrP~yfP- 406 (492)
T PLN02853 343 KRYFSIDRVFR-----NEA----VDRTHLAEFHQVEGLVCDRGLTLGD-----LIGVLEDFFSR-LGMTKLRFKPAYNP- 406 (492)
T ss_pred cEEEeccceec-----CCC----CCcccCccceeEEEEEEeCCCCHHH-----HHHHHHHHHHH-cCCceEEEecCCCC-
Confidence 48888899999 563 135675544 3322 566654 33444455544 46655554444441
Q ss_pred CCcCCCCCcHHHHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeee-ccc
Q 002583 96 DEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNI-VFI 174 (904)
Q Consensus 96 ~~~~~~~~D~e~~~iw~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNl-VFm 174 (904)
| | =|+-||+..+.+. .+||||.|. +|-
T Consensus 407 ---------------------------f-----------T---EPS~Ei~v~~~~~-----------gkWiEi~g~Gm~r 434 (492)
T PLN02853 407 ---------------------------Y-----------T---EPSMEIFSYHEGL-----------KKWVEVGNSGMFR 434 (492)
T ss_pred ---------------------------C-----------C---CCeEEEEEEecCC-----------CCEEEEecCcCcC
Confidence 1 2 3688888644211 248999875 211
Q ss_pred ccccCCCCccccCCCC--ccccCchHHHHHHHHhCCCCC
Q 002583 175 QFNRESDGSLKPLPAK--HVDTGLGFERLTSILQNKMSN 211 (904)
Q Consensus 175 q~~~~~~g~~~~Lp~~--~iDTGmGlERl~~vlqg~~s~ 211 (904)
.---.+-| +|.+ .+=-||||||+|++.=|.+..
T Consensus 435 pevl~~~G----i~~~~~~~A~GlGleRlaMl~ygi~DI 469 (492)
T PLN02853 435 PEMLLPMG----LPEDVNVIAWGLSLERPTMILYGIDNI 469 (492)
T ss_pred HHHHHhCC----CCCcceEEEEEecHHHHHHHHhCCcHH
Confidence 11111122 2444 577899999999999886644
No 49
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=41.20 E-value=13 Score=40.29 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=17.5
Q ss_pred CccccCchHHHHHHHHhCCCCC
Q 002583 190 KHVDTGLGFERLTSILQNKMSN 211 (904)
Q Consensus 190 ~~iDTGmGlERl~~vlqg~~s~ 211 (904)
..+=-||||||||++..|.+..
T Consensus 212 ~~~A~G~GleRlam~~~gi~di 233 (247)
T PF01409_consen 212 PGFAFGLGLERLAMLKYGIPDI 233 (247)
T ss_dssp EEEEEEEEHHHHHHHHHT-SSG
T ss_pred eEEEecCCHHHHHHHHcCCchH
Confidence 3566799999999999998754
No 50
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=41.08 E-value=39 Score=38.54 Aligned_cols=59 Identities=25% Similarity=0.330 Sum_probs=38.7
Q ss_pred cCceeEEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCcccc-------CCCCccccCchHHHHHHHHhCCCC
Q 002583 139 GPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP-------LPAKHVDTGLGFERLTSILQNKMS 210 (904)
Q Consensus 139 GPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~~~~-------Lp~~~iDTGmGlERl~~vlqg~~s 210 (904)
|--||+|--|.. -.++ +..-+|-|+||.+- |-|+| +|.++.--|.|.||||+||.|.+.
T Consensus 279 ~TQTEVyAyHPk-L~gs--~~kysdgWiEiATF----------GlYSP~ALaeY~Id~pVMNLGlGVERlaMIl~g~~D 344 (536)
T COG2024 279 GTQTEVYAYHPK-LVGS--IEKYSDGWIEIATF----------GLYSPIALAEYGIDYPVMNLGLGVERLAMILHGADD 344 (536)
T ss_pred CccceEEEeccc-cccc--ccccCCCcEEEEee----------cccChHHHHHcCCCCceeecchhHHHHHHHHhCchH
Confidence 347899865521 0001 12456789999853 33444 566777789999999999998543
No 51
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=33.27 E-value=22 Score=39.34 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=24.7
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 002583 190 KHVDTGLGFERLTSILQNKMSNYDTDVFM 218 (904)
Q Consensus 190 ~~iDTGmGlERl~~vlqg~~s~ydtd~f~ 218 (904)
+|==.|||+|||++++-|..|.=|+-.|.
T Consensus 248 P~~G~giGidRL~m~~~g~~~Irdv~~FP 276 (280)
T cd00777 248 PHGGIALGLDRLVMLLTGSESIRDVIAFP 276 (280)
T ss_pred CCCeEeEhHHHHHHHHcCCCchheEeecC
Confidence 57778999999999999999988775553
No 52
>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.90 E-value=24 Score=40.25 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=26.2
Q ss_pred CCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHh
Q 002583 188 PAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQAT 228 (904)
Q Consensus 188 p~~~iDTGmGlERl~~vlqg~~s~ydtd~f~~~~~~i~~~~ 228 (904)
...-.=-||||||||+||=+-| |.-+|...=+..-+.+
T Consensus 293 ~~igwafglgLerLAMll~~Ip---DiRlfWs~DeRFlkqF 330 (436)
T KOG2783|consen 293 NYIGWAFGLGLERLAMLLFDIP---DIRLFWSFDERFLKQF 330 (436)
T ss_pred ceeeeeeeccHHHHHHHHhcCc---chheeeccchHHHHhc
Confidence 3444556999999999998877 4456766655554443
No 53
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=28.53 E-value=30 Score=38.73 Aligned_cols=51 Identities=22% Similarity=0.201 Sum_probs=36.5
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcchhhhhccc-cccccccHHHHHHHHHHHchhccC
Q 002583 21 LTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELLTKVYR 82 (904)
Q Consensus 21 ~~r~~~~QkCiR~ggkhnDl~~VG~t~rH~TfFEMlGn-~SfgdYfK~eai~~awe~lt~~~~ 82 (904)
+.|+-..-+|.|+. ++ +.||.+=|-||=- ++|.|| ++.++..=+++..++.
T Consensus 73 ~~rVfeigp~FRaE-------~~--~~rHl~EFtmLE~e~~~~d~--~d~m~~~e~li~~i~~ 124 (304)
T TIGR00462 73 SGPIFQICKVFRNG-------ER--GRRHNPEFTMLEWYRPGFDY--HDLMDEVEALLQELLG 124 (304)
T ss_pred CCCEEEEcCceeCC-------CC--CCCcccHHHhHHHHHHcCCH--HHHHHHHHHHHHHHHH
Confidence 57888888999983 34 3699999999833 356676 6677777777765553
No 54
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=28.04 E-value=31 Score=38.98 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=24.0
Q ss_pred CccccCchHHHHHHHHhCCCCCcccccc
Q 002583 190 KHVDTGLGFERLTSILQNKMSNYDTDVF 217 (904)
Q Consensus 190 ~~iDTGmGlERl~~vlqg~~s~ydtd~f 217 (904)
+|==.|||+|||++++-|..+.=|+-+|
T Consensus 290 p~~G~giGidRL~m~~~g~~~Irdv~~F 317 (322)
T cd00776 290 PHGGFGLGLERLVMWLLGLDNIREAILF 317 (322)
T ss_pred CCceeeEhHHHHHHHHcCCCchheEeec
Confidence 5777899999999999999998777554
No 55
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=27.12 E-value=3e+02 Score=31.20 Aligned_cols=168 Identities=14% Similarity=0.112 Sum_probs=95.4
Q ss_pred CCCCccccCchHHHHHHHHhCCCCCccc------cccHHHHHHHHHHhCCCCCCCCCCCCcchhchhhhhh---hhhhhh
Q 002583 187 LPAKHVDTGLGFERLTSILQNKMSNYDT------DVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRV---VADHIR 257 (904)
Q Consensus 187 Lp~~~iDTGmGlERl~~vlqg~~s~ydt------d~f~~~~~~i~~~~~~~~y~g~~~~~~~~~~~~~~rv---iaDH~R 257 (904)
.+-..+-++-+++|+..+.......+.. .-|......+.+..... .+ .+. ...||- .-..+|
T Consensus 34 ~d~~~~~~~~~~~~l~~l~~a~~~il~~~~~~~r~~F~~~~~~l~~~~~l~-----~p-~~~---a~~~~~d~~~f~~ir 104 (335)
T PF11867_consen 34 FDYSKFFEASPFERLELLDDAVDHILSLEDEERRKRFLKLVKELSKAYALC-----LP-DPE---AEEYRDDIAFFQAIR 104 (335)
T ss_pred CChHHhcCCChHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH-----CC-CHH---HHHHHHHHHHHHHHH
Confidence 3444567788899999988877666642 23444444444432210 11 110 112222 234566
Q ss_pred heeeeecCCCc-cCCCCcchHHHHHHHHHHHHHHhh------hCCCcchhhhHHHHHHHHhCC-CChhhHhcHHHHHHHH
Q 002583 258 TLSFAIADGSC-PGNEGREYVLRRILRRAVRYGSEV------LKAQDGFFNGLVNIVVKVMGD-VFPELKQREAHIREII 329 (904)
Q Consensus 258 ~~~f~i~DG~~-Psn~grgyvlRrilRRa~~~~~~~------l~~~~~~l~~lv~~v~~~~~~-~ypel~~~~~~i~~ii 329 (904)
+...-+..+-- |+....+.=+|.||-.++..- .. .|.+.|=++-|-+...+.+.. -+|.+.. +.|+..|
T Consensus 105 ~~i~k~~~~~~~~~~~~~~~~i~~Lid~~I~s~-~v~~i~~~~~~~~~disild~eFl~~v~~~~~k~~~~--e~L~~~l 181 (335)
T PF11867_consen 105 AAIRKLYSDDDGPDIKEVEEKIRQLIDESIASE-GVVDIFEAAGLKKPDISILDDEFLEEVKKMKSKNLKA--ELLEKLL 181 (335)
T ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHHHhcc-cchhHHhhcCCCCCChhhcCHHHHHHHHhccCchHHH--HHHHHHH
Confidence 66554444444 888888899999999999853 11 244444344444455444443 2666653 6788888
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhhcCCCCChhhhhh
Q 002583 330 AAEEASFGKTL----LKGIEKFKKAAQDVQGKVLSGQDAFI 366 (904)
Q Consensus 330 ~~Ee~~F~~tl----~~g~~~l~~~~~~~~~~~~~g~~~f~ 366 (904)
+.+-....+.- .+=.++|+++|++.+++.++-+++|.
T Consensus 182 ~~~I~~~~~~N~~~~~~fsErLe~iI~~Y~~~~i~~~e~~~ 222 (335)
T PF11867_consen 182 RDEIKVRMKENPVRYKKFSERLEEIIEKYNNRSISSEEVIE 222 (335)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHcccchHHHHHH
Confidence 87776654431 12234666677766667777766654
No 56
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=25.89 E-value=37 Score=38.39 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=23.2
Q ss_pred CCCCccccCchHHHHHHHHhCCCCCccccccH
Q 002583 187 LPAKHVDTGLGFERLTSILQNKMSNYDTDVFM 218 (904)
Q Consensus 187 Lp~~~iDTGmGlERl~~vlqg~~s~ydtd~f~ 218 (904)
+| +|==.|+|+|||++++-|.++.=|+-.|.
T Consensus 301 ~p-p~~G~glG~eRLvm~l~g~~~Irdv~~FP 331 (335)
T PF00152_consen 301 MP-PHGGFGLGLERLVMLLLGLKNIRDVIPFP 331 (335)
T ss_dssp ---SEEEEEEEHHHHHHHHHT-SSGGGGSSS-
T ss_pred Cc-ccCcceehHHHHHHHHcCCCcHHheecCC
Confidence 44 46678999999999999999988875554
No 57
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=24.55 E-value=38 Score=40.16 Aligned_cols=29 Identities=34% Similarity=0.433 Sum_probs=24.0
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 002583 190 KHVDTGLGFERLTSILQNKMSNYDTDVFM 218 (904)
Q Consensus 190 ~~iDTGmGlERl~~vlqg~~s~ydtd~f~ 218 (904)
+|==-|||+|||++.+-|.++.=|+-+|.
T Consensus 417 PhgG~GiGieRlvm~l~g~~~Irdv~~FP 445 (453)
T TIGR00457 417 PHSGFGLGFERLLAYITGLENIRDAIPFP 445 (453)
T ss_pred CCCcEeehHHHHHHHHhCCCcHhhhccCc
Confidence 56667999999999999998887775553
No 58
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=24.35 E-value=60 Score=26.71 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEeC
Q 002583 66 KNEAIEWAWELLTKVYRLPADRLYATYFG 94 (904)
Q Consensus 66 K~eai~~awe~lt~~~~l~~~rl~vT~~~ 94 (904)
|++-++-.-+.+.+.||.|++++||.+.+
T Consensus 16 K~~l~~~it~~~~~~lg~~~~~i~V~i~E 44 (60)
T PF01361_consen 16 KRELAEAITDAVVEVLGIPPERISVVIEE 44 (60)
T ss_dssp HHHHHHHHHHHHHHHHTS-GGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCCCeEEEEEEE
Confidence 55556666677888999999999998865
No 59
>PLN02850 aspartate-tRNA ligase
Probab=24.04 E-value=37 Score=41.05 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=24.6
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 002583 190 KHVDTGLGFERLTSILQNKMSNYDTDVFM 218 (904)
Q Consensus 190 ~~iDTGmGlERl~~vlqg~~s~ydtd~f~ 218 (904)
+|==.|||||||++++-|.++.=|+-+|.
T Consensus 494 PhgG~GiGlERLvM~l~g~~nIr~v~~FP 522 (530)
T PLN02850 494 PHGGFGVGLERVVMLFCGLNNIRKTSLFP 522 (530)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEeecC
Confidence 45678999999999999999988886664
No 60
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=23.35 E-value=30 Score=40.97 Aligned_cols=27 Identities=33% Similarity=0.616 Sum_probs=23.0
Q ss_pred ccCchHHHHHHHHhCCCCCccccccHHH
Q 002583 193 DTGLGFERLTSILQNKMSNYDTDVFMPI 220 (904)
Q Consensus 193 DTGmGlERl~~vlqg~~s~ydtd~f~~~ 220 (904)
-.|||.+||+++|.|.+|.=|+ ++.|.
T Consensus 471 G~GiGIDRLvMllT~~~sIRdV-ilFP~ 497 (502)
T COG1190 471 GLGIGIDRLVMLLTNSPSIRDV-ILFPA 497 (502)
T ss_pred CccccHHHHHHHHcCCCchhhe-ecccc
Confidence 4799999999999999999998 54444
No 61
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=23.19 E-value=41 Score=39.62 Aligned_cols=48 Identities=17% Similarity=0.168 Sum_probs=34.2
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcchhhhhcccc-ccccccHHHHHHHHHHHch
Q 002583 21 LTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELLT 78 (904)
Q Consensus 21 ~~r~~~~QkCiR~ggkhnDl~~VG~t~rH~TfFEMlGn~-SfgdYfK~eai~~awe~lt 78 (904)
+.|+-...+|.|.. +.+ |.||.+=|-||--. +|.|| ++.++.+=+++.
T Consensus 199 ~~rVf~i~~~FR~E-------~~~-t~rHl~EFt~lE~e~a~~~~--~dlm~~~e~li~ 247 (428)
T TIGR00458 199 FERVYEIGPIFRAE-------EHN-THRHLNEATSIDIEMAFEDH--HDVMDILEELVV 247 (428)
T ss_pred cCcEEEEecccccC-------CCC-CccchheeeEeeeeeccCCH--HHHHHHHHHHHH
Confidence 57888889999973 333 56999989898544 77787 666666655543
No 62
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=23.09 E-value=41 Score=38.09 Aligned_cols=48 Identities=19% Similarity=0.409 Sum_probs=33.6
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCcchhhhhccc-cccccccHHHHHHHHHHHch
Q 002583 20 KLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELLT 78 (904)
Q Consensus 20 ~~~r~~~~QkCiR~ggkhnDl~~VG~t~rH~TfFEMlGn-~SfgdYfK~eai~~awe~lt 78 (904)
.+.|+-...+|.|+ |+++ .||.+=|-||-= .+|.|| ++.+..+=+++.
T Consensus 75 g~~~vf~i~~~FR~-------E~~~--~rHl~EFt~le~e~~~~~~--~~~m~~~e~li~ 123 (329)
T cd00775 75 GFERVYEIGRNFRN-------EGID--LTHNPEFTMIEFYEAYADY--NDMMDLTEDLFS 123 (329)
T ss_pred CCCcEEEEeccccC-------CCCC--CCCCCceEEEEEeeecCCH--HHHHHHHHHHHH
Confidence 36788888999997 3344 699999999843 566676 556665555554
No 63
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=22.94 E-value=41 Score=41.09 Aligned_cols=29 Identities=38% Similarity=0.465 Sum_probs=25.2
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 002583 190 KHVDTGLGFERLTSILQNKMSNYDTDVFM 218 (904)
Q Consensus 190 ~~iDTGmGlERl~~vlqg~~s~ydtd~f~ 218 (904)
+|==-|||||||++.+-|.++.=|+-+|.
T Consensus 550 PhgGfGLGiERLvm~ltGl~nIRDvi~FP 578 (586)
T PTZ00425 550 PHAGFGLGFERLIMLVTGVDNIKDTIPFP 578 (586)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEEECc
Confidence 67788999999999999999998885554
No 64
>PRK06462 asparagine synthetase A; Reviewed
Probab=22.82 E-value=43 Score=38.04 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=23.6
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 002583 190 KHVDTGLGFERLTSILQNKMSNYDTDVFM 218 (904)
Q Consensus 190 ~~iDTGmGlERl~~vlqg~~s~ydtd~f~ 218 (904)
+|==-|||+|||++.+-|.++.=|+-+|.
T Consensus 299 p~~G~glGidRLvm~~~g~~~Irdv~~FP 327 (335)
T PRK06462 299 PSAGFGIGVERLTRYICGLRHIREVQPFP 327 (335)
T ss_pred CCCeEEEcHHHHHHHHcCCCchheeeecc
Confidence 36667999999999999999887775543
No 65
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=22.76 E-value=43 Score=39.66 Aligned_cols=29 Identities=34% Similarity=0.430 Sum_probs=24.5
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 002583 190 KHVDTGLGFERLTSILQNKMSNYDTDVFM 218 (904)
Q Consensus 190 ~~iDTGmGlERl~~vlqg~~s~ydtd~f~ 218 (904)
+|==.|||+|||++.+-|.++.=|+-+|.
T Consensus 414 P~gG~GiGidRL~m~l~g~~nIrdv~~FP 442 (450)
T PRK03932 414 PHSGFGLGFERLVAYITGLDNIRDVIPFP 442 (450)
T ss_pred CCCcEeehHHHHHHHHhCCCcHhhhccCc
Confidence 67788999999999999999887775543
No 66
>PLN02532 asparagine-tRNA synthetase
Probab=22.57 E-value=42 Score=41.27 Aligned_cols=29 Identities=28% Similarity=0.262 Sum_probs=25.0
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 002583 190 KHVDTGLGFERLTSILQNKMSNYDTDVFM 218 (904)
Q Consensus 190 ~~iDTGmGlERl~~vlqg~~s~ydtd~f~ 218 (904)
+|==-|||||||++.+-|.++.=|+-+|.
T Consensus 597 PHgGfGLG~ERLvm~ltGl~nIRDvi~FP 625 (633)
T PLN02532 597 KHSGFSLGFELMVLFATGLPDVRDAIPFP 625 (633)
T ss_pred CCeEEEEhHHHHHHHHhCCCchheEeecC
Confidence 67778999999999999999988875554
No 67
>PLN02603 asparaginyl-tRNA synthetase
Probab=22.30 E-value=44 Score=40.71 Aligned_cols=31 Identities=32% Similarity=0.391 Sum_probs=25.7
Q ss_pred CCCccccCchHHHHHHHHhCCCCCccccccH
Q 002583 188 PAKHVDTGLGFERLTSILQNKMSNYDTDVFM 218 (904)
Q Consensus 188 p~~~iDTGmGlERl~~vlqg~~s~ydtd~f~ 218 (904)
..+|==-|||+|||++.+-|.++.=|+-+|.
T Consensus 527 ~pPhgGfGlG~ERLvm~ltg~~nIRdvi~FP 557 (565)
T PLN02603 527 SVPHAGFGLGFERLVQFATGIDNIRDAIPFP 557 (565)
T ss_pred CCCCceeEEcHHHHHHHHhCCCchhheeecc
Confidence 3457788999999999999999988875553
No 68
>cd06008 NF-X1-zinc-finger Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms.
Probab=22.15 E-value=36 Score=27.49 Aligned_cols=11 Identities=55% Similarity=1.346 Sum_probs=9.3
Q ss_pred CCCCcCceeEE
Q 002583 135 TGPCGPCSEIH 145 (904)
Q Consensus 135 ~GpcGPcsEi~ 145 (904)
+|||+||+|+-
T Consensus 22 ~G~C~pC~~~~ 32 (49)
T cd06008 22 EGPCPPCPETV 32 (49)
T ss_pred CCcCcCcCCcc
Confidence 68999999864
No 69
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=22.13 E-value=45 Score=40.06 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=23.0
Q ss_pred ccccCchHHHHHHHHhCCCCCccccccH
Q 002583 191 HVDTGLGFERLTSILQNKMSNYDTDVFM 218 (904)
Q Consensus 191 ~iDTGmGlERl~~vlqg~~s~ydtd~f~ 218 (904)
|==-|+|+|||++++-|.+|.=|+=+|.
T Consensus 463 ~gG~GiGiDRLvMlltg~~~Irdvi~FP 490 (496)
T TIGR00499 463 TGGLGIGIDRLVMLLTDSKSIRDVILFP 490 (496)
T ss_pred CceEEEhHHHHHHHHhCCCcHheeccCC
Confidence 4446999999999999999988875554
No 70
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=22.07 E-value=45 Score=40.54 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=34.7
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCcchhhhhccc-cccc-cccHHHHHHHHHHHch
Q 002583 20 KLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFG-DYFKNEAIEWAWELLT 78 (904)
Q Consensus 20 ~~~r~~~~QkCiR~ggkhnDl~~VG~t~rH~TfFEMlGn-~Sfg-dYfK~eai~~awe~lt 78 (904)
.+.|+-...+|+|+ |+. .|.||++=|-||-- .+|+ +| +|.++.+=+++.
T Consensus 278 g~~rVfeI~p~FRa-------E~s-~T~RHl~EFt~Le~E~~~~~~y--~evm~~~e~l~~ 328 (550)
T PTZ00401 278 DVPRVFEVGPVFRS-------ENS-NTHRHLTEFVGLDVEMRINEHY--YEVLDLAESLFN 328 (550)
T ss_pred CCCCEEEEeCeEeC-------CCC-CCCCCccchhhhhhhhHhcCCH--HHHHHHHHHHHH
Confidence 36788888999997 334 37899999999977 7886 56 345555444443
No 71
>PLN02221 asparaginyl-tRNA synthetase
Probab=21.36 E-value=46 Score=40.63 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=34.2
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcchhhhhccc-cccccccHHHHHHHHHHH
Q 002583 21 LTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWEL 76 (904)
Q Consensus 21 ~~r~~~~QkCiR~ggkhnDl~~VG~t~rH~TfFEMlGn-~SfgdYfK~eai~~awe~ 76 (904)
+.|+-...+|.|+- + ..|.||++=|-||-- ++|.|| ++.+.++=++
T Consensus 326 l~rVfeIgP~FRAE-------~-s~T~RHL~EFtmlE~Emaf~d~--~dvm~l~E~l 372 (572)
T PLN02221 326 LSSVYTFGPTFRAE-------N-SHTSRHLAEFWMVEPEIAFADL--EDDMNCAEAY 372 (572)
T ss_pred cCCeEEEccceecC-------C-CCCCcccccccceeeeeecCCH--HHHHHHHHHH
Confidence 68999999999983 2 258899999999844 488887 5566554433
No 72
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=21.27 E-value=1.2e+02 Score=24.43 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEeC
Q 002583 66 KNEAIEWAWELLTKVYRLPADRLYATYFG 94 (904)
Q Consensus 66 K~eai~~awe~lt~~~~l~~~rl~vT~~~ 94 (904)
|++-++-..+.|.+.+|.|++.++|.+-+
T Consensus 16 k~~l~~~i~~~l~~~~g~~~~~v~V~i~e 44 (58)
T cd00491 16 KRELIERVTEAVSEILGAPEATIVVIIDE 44 (58)
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 55556666677888999999999998854
No 73
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=21.03 E-value=4.2e+02 Score=22.99 Aligned_cols=38 Identities=13% Similarity=0.388 Sum_probs=23.1
Q ss_pred HHHHHhhcCCCccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 002583 732 VASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVA 771 (904)
Q Consensus 732 v~~l~~~~~~~~i~~~~~~~l~~~i~~l~~~~~~l~ke~~ 771 (904)
|..+.-++.++ |...+..+..+|..++.++..+++++.
T Consensus 41 l~qMe~E~~~~--p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 41 LKQMELEVRSL--PPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHCTS---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555544 344566777777777777777766653
No 74
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=20.78 E-value=59 Score=38.18 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=27.2
Q ss_pred CCCccccCchHHHHHHHHhCCCCCccccccHH
Q 002583 188 PAKHVDTGLGFERLTSILQNKMSNYDTDVFMP 219 (904)
Q Consensus 188 p~~~iDTGmGlERl~~vlqg~~s~ydtd~f~~ 219 (904)
+.+|=--|+|||||++.+-|..+.=|+-+|..
T Consensus 397 ~~PHaGfGlG~ERlv~~i~gl~nIRea~pFPR 428 (435)
T COG0017 397 MPPHAGFGLGLERLVMYILGLDNIREAIPFPR 428 (435)
T ss_pred CCCCcccccCHHHHHHHHhCCCcceeccccCC
Confidence 45688899999999999999999888866653
No 75
>PLN02502 lysyl-tRNA synthetase
Probab=20.69 E-value=49 Score=40.22 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=22.9
Q ss_pred ccccCchHHHHHHHHhCCCCCcccccc
Q 002583 191 HVDTGLGFERLTSILQNKMSNYDTDVF 217 (904)
Q Consensus 191 ~iDTGmGlERl~~vlqg~~s~ydtd~f 217 (904)
+==.|||+|||+++|-|.+|.=|+=+|
T Consensus 520 ~gG~GiGiDRLvMlltg~~sIrdVi~F 546 (553)
T PLN02502 520 TGGWGLGIDRLVMLLTDSASIRDVIAF 546 (553)
T ss_pred CceEEehHHHHHHHHcCCcchheeecC
Confidence 556799999999999999999887444
No 76
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=20.29 E-value=51 Score=39.68 Aligned_cols=28 Identities=21% Similarity=0.422 Sum_probs=23.2
Q ss_pred ccccCchHHHHHHHHhCCCCCccccccH
Q 002583 191 HVDTGLGFERLTSILQNKMSNYDTDVFM 218 (904)
Q Consensus 191 ~iDTGmGlERl~~vlqg~~s~ydtd~f~ 218 (904)
|==.|+|+|||++++-|.+|.=|+=+|.
T Consensus 472 ~gG~GiGiDRLvMlltg~~sIrdvi~FP 499 (505)
T PRK12445 472 TAGLGIGIDRMIMLFTNSHTIRDVILFP 499 (505)
T ss_pred CCeEEEhHHHHHHHHcCCCchheEecCC
Confidence 4456999999999999999988875554
No 77
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=20.13 E-value=98 Score=25.55 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEeC
Q 002583 66 KNEAIEWAWELLTKVYRLPADRLYATYFG 94 (904)
Q Consensus 66 K~eai~~awe~lt~~~~l~~~rl~vT~~~ 94 (904)
|++-++-.-+.|.+.||+|++.++|.+-+
T Consensus 17 k~~l~~~it~~l~~~~~~p~~~v~V~i~e 45 (62)
T PRK00745 17 KRKLVEEITRVTVETLGCPPESVDIIITD 45 (62)
T ss_pred HHHHHHHHHHHHHHHcCCChhHEEEEEEE
Confidence 55556666777888999999999988854
Done!