Query 002583
Match_columns 904
No_of_seqs 293 out of 2111
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 16:50:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002583.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1300-1303//hhsearch_pdb/002583hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zze_A Alanyl-tRNA synthetase; 1.0 1 1 1465.6 40.5 590 1-701 101-752 (752)
2 2ztg_A Alanyl-tRNA synthetase; 1.0 1 1 1373.3 38.5 581 1-702 101-739 (739)
3 1yfs_A Alanyl-tRNA synthetase; 1.0 1 1 1199.4 20.2 383 1-411 44-431 (465)
4 3hy0_A Alanyl-tRNA synthetase; 1.0 1 1 1196.9 21.9 383 1-408 43-438 (441)
5 3kew_A DHHA1 domain protein; s 1.0 1 1 409.8 23.0 225 441-706 10-234 (241)
6 2e1b_A PH0108, 216AA long hypo 1.0 1 1 370.2 16.1 201 442-699 13-215 (216)
7 1nyr_A Threonyl-tRNA synthetas 1.0 1 1 249.3 14.2 218 525-764 53-285 (645)
8 1qf6_A THRRS, threonyl-tRNA sy 1.0 1 1 242.3 18.3 204 539-764 65-285 (642)
9 1tke_A Threonyl-tRNA synthetas 1.0 1 1 213.4 17.5 169 508-701 40-224 (224)
10 1v4p_A Alanyl-tRNA synthetase; 1.0 1 1 199.7 16.9 145 541-701 3-152 (157)
No 1
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=1.00 E-value=1 Score=1465.61 Aligned_cols=590 Identities=28% Similarity=0.461 Sum_probs=535.5
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC-----CCCHHHHHHHHH
Q ss_conf 998865544-78799986665665443344312489888877878888751011100555455-----443898999999
Q 002583 1 MNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAW 74 (904)
Q Consensus 1 M~qfk~~fl-g~~~~~~~~~~~~r~~~~QkCiR~~gkhnDl~~VG~~~rH~T~FeMlGn~sfg-----dYfk~eai~~a~ 74 (904)
||||||||+ |.++|++ +|+|+||||||+ |||||||+|+||||||||||||||| ||||+|||.|||
T Consensus 101 m~~fk~~f~~G~~~pp~-----~r~~~~QkCiR~----~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~aw 171 (752)
T 2zze_A 101 IMDFQPWVISGEADPPA-----NPLVISQPSIRF----TDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAF 171 (752)
T ss_dssp GGGGTTHHHHTSSCCSS-----SSEEEEEEEECC----TTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCC-----CCCCCCCCCEEC----CCHHHCCCCCCCHHHHHHCCCCEECCCCHHHHHHHHHHHHHH
T ss_conf 34403766088768999-----870455454124----767544888862467885754230797167778888999999
Q ss_pred HHCHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 97020038899963999967997689999678999998309999833688877864579978886853677514799887
Q 002583 75 ELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDA 154 (904)
Q Consensus 75 e~lt~~~~~~~~~l~vT~~~~d~~~~~~~D~e~~~~w~~~~~~~~i~~~~~~~nfW~~g~~GpcGpcsEi~~d~~~~~~~ 154 (904)
||||++||||++|| |+ +||||+|| ||||||||||||
T Consensus 172 e~lT~~~gl~~~ri--~~---------------------------------~dNfW~~G--GpcGPcsEI~~d------- 207 (752)
T 2zze_A 172 EFFTKELXMXPEDI--TF---------------------------------KENPWAGG--GNAGPAFEVLYR------- 207 (752)
T ss_dssp HHHHHTSCCCGGGE--EE---------------------------------EECCEEET--TEEECEEEEEET-------
T ss_pred HHHHHHHHCCHHHE--EE---------------------------------CCCCCCCC--CCCCCCEEEEEC-------
T ss_conf 99743641463123--23---------------------------------25733479--898885468778-------
Q ss_pred CCCCCCCCCCEEEEEEECCCCC-------------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 7778899997269842101122-------------237999634589884446742899999981999875565309999
Q 002583 155 ASLVNNDDPTCIEIWNIVFIQF-------------NRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIF 221 (904)
Q Consensus 155 ~~~~~~~~~~~lEiwNlVf~q~-------------~~~~~g~l~~L~~~~iDtG~GlERl~~vlq~~~s~y~td~f~p~~ 221 (904)
+||||||||||| || .+|+|.|||+||||||||||||+|||||++||||| +|.|||
T Consensus 208 ----------glEiwNlVFmq~~~~~~~~~~~~~~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii 275 (752)
T 2zze_A 208 ----------GLEVATLVFMQYXXAPENAPQDQVVVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVV 275 (752)
T ss_dssp ----------TEEEEEEEEEEEEECCTTCCSCCEEET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHH
T ss_pred ----------CEEEEEEEEEEECCCCCCCCCCCHHCC-CCCEEEECCCCCCCCCCCHHHHHHHHCCCCCHHHH-HHHHHH
T ss_conf ----------775130000121145444323101113-69825357754304663799999998189965998-899999
Q ss_pred HHHHHHHCCC-----------CCCCCCCCCCCHHC------------------------HHHHHHHHHHHHHEEEEECCC
Q ss_conf 9999994999-----------88897899861000------------------------005566452010201124189
Q 002583 222 DAIQQATGAR-----------PYSGKVGADDADKV------------------------DMAYRVVADHIRTLSFAIADG 266 (904)
Q Consensus 222 ~~i~~~~~~~-----------~y~g~~~~~~~~~~------------------------~~~~r~iaDH~R~~~~~i~dg 266 (904)
++++++++++ +|+|.++.++...+ +.++||||||+||++|||+||
T Consensus 276 ~~~~~~~g~~y~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DG 355 (752)
T 2zze_A 276 EPLXXMAGIEKIDEKILMENSRLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADG 355 (752)
T ss_dssp HHHHHHHTCCCCCHHHHHHHHHHHHTCCSSSSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCC
T ss_conf 99997608875520233221000356784320048999998877517777887653055312788622455346310267
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85489896247899999999997766099864022479999998278783447609999999999999999999999999
Q 002583 267 SCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEK 346 (904)
Q Consensus 267 ~~P~n~grgyvlRri~RRa~~~~~~~l~~~~~~l~~l~~~~~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~ 346 (904)
++|||+|||||||||||||+|+++ .||++.| |++||+.+++.|++.||||.++++.|++||+.||++|.+||++|+++
T Consensus 356 v~PsN~GrGYvlRrilRRa~r~~~-~lg~~~~-l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~~~ 433 (752)
T 2zze_A 356 VVPSNVXAGYLARLLIRKSIRHLR-ELGLEVP-LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGSDL 433 (752)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHHHH-HTTCCCC-HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCC-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 776752215899999999999999-8489956-66889999987630065566669999999999999999999999999
Q ss_pred HHHHHHHHC---CCCCCHHHHHHEECCCCCCHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 999998622---9989803432100467999678999999919832966-499999999998586320014785223466
Q 002583 347 FKKAAQDVQ---GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDAD 422 (904)
Q Consensus 347 l~~~~~~~~---~~~~~g~~~f~Lydt~G~P~dl~~~~a~e~g~~vd~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~ 422 (904)
|++++++++ .+.|||++||+||||||||+|||++||+|+|++||++ +|+++|++||+++|++. . .. ..+
T Consensus 434 l~~~~~~~~~~~~~~l~g~~af~LyDTyGfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~-~-~~---~~~-- 506 (752)
T 2zze_A 434 VRREIAKLKKKGIKEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEK-G-EE---LVD-- 506 (752)
T ss_dssp HHHHHHHHHHHSCSCCCHHHHHHHHHHHCCCHHHHHHHHTTSSCCCCCCTTHHHHHHGGGGCC------------CCC--
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC-C-CC---CHH--
T ss_conf 9999998664378756778888887615999899999999859823775559999999999976354-4-64---024--
Q ss_pred HHHHHHHCCCCCCCCCCCCC--CCCCCCEEEEEEEECCEEEEEECCCCEEEEEEECEEEEECCCCEECEEEEEECCCEEE
Q ss_conf 88998422888866556766--3100132799998488255420299808999500158980398421001797257039
Q 002583 423 ATAALHKRGVLATDDSFKFI--WFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSF 500 (904)
Q Consensus 423 ~~~~l~~~~~~~t~~~~~Y~--~~~~~~a~Vl~i~~~~~~~~~~~~~~~~~ivLd~T~FYpegGGQ~~D~G~I~~~~~~~ 500 (904)
...+. ..++|+ +.+|+ |.++++|+|+++.. .+|+||+|||||||||||+|+|+|..++..+
T Consensus 507 -~~~~~--~~~~T~-~l~Y~~~yl~~~~a~Vl~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~ 569 (752)
T 2zze_A 507 -FELLK--DLPDTR-RLYYEDPFMXEFDAXVLRVIX-------------DWVILDATAFYPEGGGQPYDTGVLIVNGREV 569 (752)
T ss_dssp -SSSSS--SSCCCE-EHHHHCTTCCEEEEEEEEEET-------------TEEEESEECSCCSBTTBCCCCEEEEETTEEE
T ss_pred -HHHHC--CCCCCE-EECCCCCCCCEEEEEEEEEEC-------------CEEEEECCCCCCCCCCCCCCEEEEEECCEEE
T ss_conf -67750--478852-532567865558899999981-------------7899828987888899999879997598899
Q ss_pred EEEEEEEECCEEEEEEEEECCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEE
Q ss_conf 99979997999999997304776568998899984355555565441499999999998809940101134369957999
Q 002583 501 YVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFD 580 (904)
Q Consensus 501 ~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTA~HLL~~ALr~vlg~~v~q~Gs~v~~d~~r~D 580 (904)
+|.+|++.+|.++|.+.. . +.+.+|+.|.++|||+||+.+|++|||+|||++||+++||.+++|.|+++.++++|||
T Consensus 570 ~V~dv~k~~g~ivH~~~~-~--~~l~vGd~V~~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfD 646 (752)
T 2zze_A 570 XVTNVQXVGXVIIHXVED-P--GAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLD 646 (752)
T ss_dssp EEEEEEEETTEEEEEESC-G--GGCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEE
T ss_pred EEEEEEECCCEEEEECCC-C--CCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEE
T ss_conf 998611048589995366-6--7667698699998078888999984899999999998738751663475457824999
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCHHHC--CCCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 3189999997999999999999980799699990888896101702110--78699986999966762000259888644
Q 002583 581 FSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF--GEVYPDPVRVVAIGRKVEDLLADPENKEW 658 (904)
Q Consensus 581 f~~~~~lt~eel~~IE~~vNeiI~~~lpV~~~~~~~eeA~~~~~~~~~~--~e~y~d~VRvV~Ig~~~~~~~~~~~~~~~ 658 (904)
|+++.++|++++.+||++||++|++++||++.++++++|++.++. ++| +++|.+.||||+||
T Consensus 647 Fs~~~~lt~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~~-~lf~~ge~ygd~VRVV~IG--------------- 710 (752)
T 2zze_A 647 ISHYXRISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGF-RLYQGGVVPGREIRVVXIE--------------- 710 (752)
T ss_dssp EECSSCCCHHHHHHHHHHHHHHHHHTCBEEEEEEEHHHHHHHHCG-GGCSSCCCCSSEEEEEEET---------------
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHCCHH-HHHCCCCCCCCEEEEEEEC---------------
T ss_conf 727877777789999999999998188630231578887540226-6512789989838999979---------------
Q ss_pred CCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECH
Q ss_conf 5303320267775541243557998554237871499999151
Q 002583 659 LSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTG 701 (904)
Q Consensus 659 ~~~~~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~ 701 (904)
++|+++||||||+|||+||.|+|++++++++|++||+|+||.
T Consensus 711 -d~svelCGGTHV~nTgeIG~fKIls~s~i~~GvrRIeavtG~ 752 (752)
T 2zze_A 711 -DWDVQACGGTHLPSTGLVGPIXILRTERIQDGVERIIFACGE 752 (752)
T ss_dssp -TTEEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEEEEECC
T ss_pred -CCEECCCCCCCCCCHHHCCEEEEEEEEEECCCEEEEEEEECC
T ss_conf -941279999766787675678999999973997999999487
No 2
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=1.00 E-value=1 Score=1373.31 Aligned_cols=581 Identities=28% Similarity=0.463 Sum_probs=525.6
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC-----CCCHHHHHHHHH
Q ss_conf 998865544-78799986665665443344312489888877878888751011100555455-----443898999999
Q 002583 1 MNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAW 74 (904)
Q Consensus 1 M~qfk~~fl-g~~~~~~~~~~~~r~~~~QkCiR~~gkhnDl~~VG~~~rH~T~FeMlGn~sfg-----dYfk~eai~~a~ 74 (904)
|+||||||+ |..+|++ .|+|++|||||+ |||||||+|+||||||||||||||| ||||+|||.|||
T Consensus 101 m~~fkp~~~~g~~~p~~-----~~~~~~Q~ciR~----~D~envg~t~rH~tfFeMlgn~sFg~~~~~dYfK~eai~~~~ 171 (739)
T 2ztg_A 101 IADFQPFVTSGVAPPPA-----NPLTISQPCIRL----DDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCT 171 (739)
T ss_dssp GGGGTTTTTTSSSCCSS-----SSEEEEEEEECG----GGGGGTTTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHH
T ss_pred HHHCCHHHHCCCCCCCC-----CCCCCCCCCCCC----CCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 22270767089779999-----886455346537----644568877763134411474416898644421999999999
Q ss_pred HHCHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 97020038899963999967997689999678999998309999833688877864579978886853677514799887
Q 002583 75 ELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDA 154 (904)
Q Consensus 75 e~lt~~~~~~~~~l~vT~~~~d~~~~~~~D~e~~~~w~~~~~~~~i~~~~~~~nfW~~g~~GpcGpcsEi~~d~~~~~~~ 154 (904)
||| ++|||||+|| |+ +||||+|| ||||||||||||
T Consensus 172 e~l-~~~g~~~~~i--~~---------------------------------~dnfW~~g--Gp~Gpc~Ei~~d------- 206 (739)
T 2ztg_A 172 ELL-NELGVKKEDI--VY---------------------------------KEEPWAGG--GNAGPCLEAIVG------- 206 (739)
T ss_dssp HHH-HHHTCCGGGC--EE---------------------------------EEEEEEET--TEEEEEEEEEET-------
T ss_pred HHH-HHHCCCHHHE--EE---------------------------------CCCCCCCC--CCCCCEEEEEEC-------
T ss_conf 999-8819899994--06---------------------------------46725578--787870699989-------
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCCCCC-------CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 7778899997269842101122237999634-------589884446742899999981999875565309999999999
Q 002583 155 ASLVNNDDPTCIEIWNIVFIQFNRESDGSLK-------PLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQA 227 (904)
Q Consensus 155 ~~~~~~~~~~~lEiwNlVf~q~~~~~~g~l~-------~L~~~~iDtG~GlERl~~vlq~~~s~y~td~f~p~~~~i~~~ 227 (904)
.+||||+|||||||+.+|+|. |||+++||||||||||+|+|||++||||| +|.|||++++++
T Consensus 207 ----------g~EiwnlVfmq~~r~~~g~~~~~~~~y~~l~~~~iDtG~GlER~~~~lqg~~s~yd~-~f~pii~~~~~~ 275 (739)
T 2ztg_A 207 ----------GLEVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLERFVWASKGTPTVYDA-IFPEVVDTIIDN 275 (739)
T ss_dssp ----------TEEEEEEEEEEEEECTTCCEEETTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HCHHHHHHHHHT
T ss_pred ----------CEEEEEEEEEEEEECCCCCEEECCCCCCCCCCCEEECCCCHHHHHHHHCCCCCHHHH-HHHHHHHHHHHH
T ss_conf ----------798642356776405898622167666689998574484999999998499936886-599999999998
Q ss_pred HCCC----------------CCCCCCCCCCCHHCH------------------------HHHHHHHHHHHHEEEEECCCC
Q ss_conf 4999----------------888978998610000------------------------055664520102011241898
Q 002583 228 TGAR----------------PYSGKVGADDADKVD------------------------MAYRVVADHIRTLSFAIADGS 267 (904)
Q Consensus 228 ~~~~----------------~y~g~~~~~~~~~~~------------------------~~~r~iaDH~R~~~~~i~dg~ 267 (904)
++++ +|+|+++.++.+.++ .++||||||+||++|||+||+
T Consensus 276 ~g~~y~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~a~~~~~~~~~~~~~~~~~~~~rviaDH~R~~~f~i~DGv 355 (739)
T 2ztg_A 276 SNVSFNREDERVRRIVAESSKLAGIMGELRGERLNQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGL 355 (739)
T ss_dssp SCCSSCTTCHHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEECHHHHHHHHHCCCC
T ss_conf 59986656530123332210002456755400599999876653155445543202553128998107777798851676
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 54898962478999999999977660998640224799999982787834476099999999999999999999999999
Q 002583 268 CPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKF 347 (904)
Q Consensus 268 ~P~n~grgyvlRri~RRa~~~~~~~l~~~~~~l~~l~~~~~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~l 347 (904)
+|||+|||||||||||||+|++ +.||++.| |++||+++++.|++ ||.++++.|++||+.||++|.+||++|+++|
T Consensus 356 ~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~~lv~~~~~~m~~---el~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l 430 (739)
T 2ztg_A 356 VPSNAGAGYLARLMIRRSLRLA-EELELGLD-LYDLVEMHKKILGF---EFDVPLSTVQEILELEKERYRTTVSKGTRLV 430 (739)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHH-HHTTCSSC-HHHHHHHHHHHHCC---CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHH-HHHCCCCC-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6687786249999999999999-98489855-77899999999989---9998799999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHEECCCCCCHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 999986229989803432100467999678999999919832966-4999999999985863200147852234668899
Q 002583 348 KKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 426 (904)
Q Consensus 348 ~~~~~~~~~~~~~g~~~f~Lydt~G~P~dl~~~~a~e~g~~vd~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~ 426 (904)
+++++++++ |||++||+||||||||+|||++||+|+|++||++ +|+++|++||++||++. . . + + .
T Consensus 431 ~~~~~~~~~--l~g~~af~LyDTyGfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~a~~~~--~-~-----~---~-~ 496 (739)
T 2ztg_A 431 ERLVERKKK--LEKDDLIELYDSHGIPVELAVGIAAEKGAEVEMPKDIYAELAKRHSKAEKVQ--E-K-----K---I-T 496 (739)
T ss_dssp HHHHHHHSB--CCHHHHHHHHHHHCCCHHHHHHHHHHTTCBCCCCTTHHHHHHHTTSBCCCCC--C-C-----C---C-C
T ss_pred HHHHHHHCC--CCHHHHHHHHHHCCCCHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHCC--C-C-----C---H-H
T ss_conf 999987407--9989999988703989999999999749715775549999999999976353--4-4-----4---1-2
Q ss_pred HHHCCCCCCCCCCCCC--CCCCCCEEEEEEEECCEEEEEECCCCEEEEEEECEEEEECCCCEECEEEEEECCCEEEEEEE
Q ss_conf 8422888866556766--31001327999984882554202998089995001589803984210017972570399997
Q 002583 427 LHKRGVLATDDSFKFI--WFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRN 504 (904)
Q Consensus 427 l~~~~~~~t~~~~~Y~--~~~~~~a~Vl~i~~~~~~~~~~~~~~~~~ivLd~T~FYpegGGQ~~D~G~I~~~~~~~~V~d 504 (904)
+. ...++|+ +.+|+ |.++++|+|+++.. .+|+||+|||||||||||+|+|+|..++..++|.+
T Consensus 497 ~~-~~~~~T~-~l~Y~~~y~~~~~a~Vl~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~d 561 (739)
T 2ztg_A 497 LQ-NEYPATE-KLYYDDPTLLEFEAEVIGVEG-------------DFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVD 561 (739)
T ss_dssp CS-SCCCCCE-ECTTTCTTCCEEEEEEEEEET-------------TEEEESEECCCCSBTTBCCCCEEEEETTEEEEECE
T ss_pred HH-CCCCCCE-EECCCCCCCCEEEEEEEEEEC-------------CEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEE
T ss_conf 31-2688861-542567765578899999975-------------78998189878888999998799987998999999
Q ss_pred EEEECCEEEEEEEEECCCCCC-CCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECC
Q ss_conf 999799999999730477656-8998899984355555565441499999999998809940101134369957999318
Q 002583 505 VQIYGGFVIHIGSLTEGAGRF-SVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSH 583 (904)
Q Consensus 505 v~~~~g~i~H~~~~~~~~~~l-~~G~~V~~~VD~~rR~~~m~~HTA~HLL~~ALr~vlg~~v~q~Gs~v~~d~~r~Df~~ 583 (904)
|++.+|.++|.+. +.+ .+|++|.++|||+||..+|++|||+|||++|++++||.+++|.||++.++++||||++
T Consensus 562 v~k~~g~ivH~~~-----~~~~~~Gd~V~~~VD~~rR~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~ 636 (739)
T 2ztg_A 562 VLEADGVVLHVVK-----GAKPEVGTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTH 636 (739)
T ss_dssp EEEETTEEEEECC-----SSCCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEEC
T ss_pred EEEECCEEEEEEC-----CCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEECCCCEEEEEEC
T ss_conf 9998999999971-----45778998899998689999999998999999999997569967865767728817999857
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCHHHC-CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEE
Q ss_conf 9999997999999999999980799699990888896101702110-786999869999667620002598886445303
Q 002583 584 GKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF-GEVYPDPVRVVAIGRKVEDLLADPENKEWLSIS 662 (904)
Q Consensus 584 ~~~lt~eel~~IE~~vNeiI~~~lpV~~~~~~~eeA~~~~~~~~~~-~e~y~d~VRvV~Ig~~~~~~~~~~~~~~~~~~~ 662 (904)
+.++|++++.+||++||++|++|+||++.++++++|+++++.+.+. ++.|.+.||||+|| + +
T Consensus 637 ~~~lT~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~l~L~~~~~~~~d~VRVV~IG----------------d-~ 699 (739)
T 2ztg_A 637 FRRPSEEEIKEIEMLANREILANKPIKWEWMDRIEAERKFGFRLYQGGVPPGRKIRVVQVG----------------D-D 699 (739)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHTTCBEEEEEEEHHHHHHHHCGGGGTTCCCCSSEEEEEEET----------------T-E
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCHHHHCCCCCCCCEEEEEEEC----------------C-E
T ss_conf 9889999999999999999974998899980899998718776524789889868999989----------------9-0
Q ss_pred EEECCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECHH
Q ss_conf 3202677755412435579985542378714999991516
Q 002583 663 AELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGL 702 (904)
Q Consensus 663 ~e~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~ 702 (904)
+++||||||+|||+||.|+|++++++++|++||+|+||..
T Consensus 700 ~elCGGTHV~nTgeIg~fkIls~s~i~~GvrRIeavtG~~ 739 (739)
T 2ztg_A 700 VQACGGTHCRSTGEIGMLKILKVESIQDGVIRFEFAAGEA 739 (739)
T ss_dssp EEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEEEEESCC
T ss_pred EECCCCCCCCCHHHCCCEEEEEEEEECCCEEEEEEEECCC
T ss_conf 0676896724486718399999747729879999996589
No 3
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=1.00 E-value=1 Score=1199.40 Aligned_cols=383 Identities=47% Similarity=0.884 Sum_probs=365.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHCHHC
Q ss_conf 99886554478799986665665443344312489888877878888751011100555455443898999999970200
Q 002583 1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKV 80 (904)
Q Consensus 1 M~qfk~~flg~~~~~~~~~~~~r~~~~QkCiR~~gkhnDl~~VG~~~rH~T~FeMlGn~sfgdYfk~eai~~a~e~lt~~ 80 (904)
||||||||+|.++|+ ++|+|+||||||+|||||||||||+|+|||||||||||||||||||+|||.|||||||++
T Consensus 44 M~~FKp~flG~~~p~-----~~r~t~sQkCiRag~~hNDlenVG~t~rHhTfFEMLGNfSFGDYFK~eAI~~AwE~LT~~ 118 (465)
T 1yfs_A 44 MVPFKNVFLGLEKRP-----YKRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEV 118 (465)
T ss_dssp TSTTHHHHHTSSCCS-----CSEEEEEEEEECEETTEECGGGBTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCC-----CCCEECCCCCCCCCCCCCCHHHCCCCCCCCCHHEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 455157764988899-----986001340120688866176538888752130043442135663999999999999865
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHC--CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 3889996399996799768999967899999830--99998336888778645799788868536775147998877778
Q 002583 81 YRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLV 158 (904)
Q Consensus 81 ~~~~~~~l~vT~~~~d~~~~~~~D~e~~~~w~~~--~~~~~i~~~~~~~nfW~~g~~GpcGpcsEi~~d~~~~~~~~~~~ 158 (904)
|||||+|||||||++ |+||++||++. +|++||+++|.+||||+||++||||||||||||+|++++
T Consensus 119 lgl~~~rL~vTv~~~--------D~Ea~~iW~~~~G~p~~rI~~~g~~dNFW~mG~tGPCGPCsEI~yD~g~~~~----- 185 (465)
T 1yfs_A 119 LKLPKEKLYVSVYKD--------DEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYE----- 185 (465)
T ss_dssp SCCCGGGEEEEEETT--------CHHHHHHHHTTTCCCGGGEEEECHHHHEEESSSSEEEEEEEEEEEECCTTSC-----
T ss_pred CCCCHHHEEEEEECC--------CHHHHHHHHHHCCCCHHHEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCC-----
T ss_conf 199778948988279--------7899999997309989995667876776647898488787578871578878-----
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 89999726984210112223799963458988444674289999998199987556530999999999949998889789
Q 002583 159 NNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVG 238 (904)
Q Consensus 159 ~~~~~~~lEiwNlVf~q~~~~~~g~l~~L~~~~iDtG~GlERl~~vlq~~~s~y~td~f~p~~~~i~~~~~~~~y~g~~~ 238 (904)
++||||||||||||||||.++|+|.|||+||||||||||||+|||||++||||||+|.|||++|+++++++ |..
T Consensus 186 --~~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmGLERla~vlQg~~snYdtDlf~pii~~i~~~~g~~-Y~~--- 259 (465)
T 1yfs_A 186 --GDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKK-YGE--- 259 (465)
T ss_dssp --HHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCSSGGGSTTTHHHHHHHHHHHCCC-TTS---
T ss_pred --CCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC-CCC---
T ss_conf --88777876311336778458986332899704158679999999819986320563899999999985998-777---
Q ss_pred CCCCHHCHHHHHHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHH
Q ss_conf 98610000055664520102011241898548989624789999999999776609986402247999999827878344
Q 002583 239 ADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPEL 318 (904)
Q Consensus 239 ~~~~~~~~~~~r~iaDH~R~~~~~i~dg~~P~n~grgyvlRri~RRa~~~~~~~l~~~~~~l~~l~~~~~~~~~~~ypel 318 (904)
+ +..|+++||||||+||++|||+||++|||+|||||||||||||+|+++ .||++.|||++||+++++.|++.||||
T Consensus 260 -~--~~~d~s~rvIADH~R~~~f~I~DGv~PsN~GrGYVLRRilRRavr~g~-~Lg~~~~fl~~Lv~~v~~~m~~~yPel 335 (465)
T 1yfs_A 260 -K--FETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRAMRFGY-KLGIENPFLYKGVDLVVDIMKEPYPEL 335 (465)
T ss_dssp -C--HHHHHHHHHHHHHHHHHHHHHHTTCCCCSBHHHHHHHHHHHHHHHHHH-HTTCCSCCHHHHHHHHHHHHTTTCTHH
T ss_pred -C--CCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHCCCCHH
T ss_conf -7--666624899744112324310056654778861499999999999999-958980358899999999974538066
Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCHHHHHHEECCCCCCHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 7609999999999999999999999999999998622---9989803432100467999678999999919832966499
Q 002583 319 KQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFN 395 (904)
Q Consensus 319 ~~~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~---~~~~~g~~~f~Lydt~G~P~dl~~~~a~e~g~~vd~~~f~ 395 (904)
.++++.|++||..||++|.+||++|+++|++++++++ ++.|||++||+||||||||+|||++||+|+|++||+++|+
T Consensus 336 ~~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~~~~~~~~~~l~G~~af~LyDTyGfP~dLt~eia~e~g~~vD~~gF~ 415 (465)
T 1yfs_A 336 ELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQ 415 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHTSCCCHHHHHHHHHTTTCEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCEECHHHHH
T ss_conf 66589999999999999999999999999999998875589767989987645446989999999999869916789999
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999985863200
Q 002583 396 NAMDEARERSRSAQNK 411 (904)
Q Consensus 396 ~~~~~~~~~sr~~~~~ 411 (904)
++|++||++||++++.
T Consensus 416 ~~m~~q~~rar~~~~~ 431 (465)
T 1yfs_A 416 CELEEQRERARKHFKV 431 (465)
T ss_dssp HHHHHHHHTTTTC---
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 9999999999864544
No 4
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=1.00 E-value=1 Score=1196.87 Aligned_cols=383 Identities=50% Similarity=0.901 Sum_probs=364.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHCH--
Q ss_conf 998865544787999866656654433443124898888778788887510111005554554438989999999702--
Q 002583 1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLT-- 78 (904)
Q Consensus 1 M~qfk~~flg~~~~~~~~~~~~r~~~~QkCiR~~gkhnDl~~VG~~~rH~T~FeMlGn~sfgdYfk~eai~~a~e~lt-- 78 (904)
||||||||+|.++|+ ++|+|+||||||+|||||||||||+|+|||||||||||||||||||+|||.|||||||
T Consensus 43 M~~FKp~flG~~~p~-----~~r~~~sQkCiR~gGKHnDlenVG~t~rHhTfFEMLGNfSFGDYFK~eAI~~Awe~LT~~ 117 (441)
T 3hy0_A 43 MNQFKDVFLGLDKRN-----YSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSE 117 (441)
T ss_dssp GGGGHHHHHTSSCCS-----CSEEEEEEEEECEETTEECGGGBTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHCCCCCCC-----CCCCCCCCCCEECCCCCCCHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 033135653899999-----987235553354599877777608887542203354543311211989999999981777
Q ss_pred HCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHC--CCCCCCCCCC-------CCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 003889996399996799768999967899999830--9999833688-------8778645799788868536775147
Q 002583 79 KVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRVLPFG-------CKDNFWEMGDTGPCGPCSEIHYDRT 149 (904)
Q Consensus 79 ~~~~~~~~~l~vT~~~~d~~~~~~~D~e~~~~w~~~--~~~~~i~~~~-------~~~nfW~~g~~GpcGpcsEi~~d~~ 149 (904)
++|||||+|||||||++ |+||++||++. +|++||+++| .+||||+||++||||||||||||+|
T Consensus 118 ~~lgl~~erL~vTvf~~--------D~Ea~~iW~~~~Gvp~~rI~~~g~~~~~~y~~dNFW~mG~tGPCGPCsEI~yD~g 189 (441)
T 3hy0_A 118 KWFALPKERLWVTVYES--------DDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHG 189 (441)
T ss_dssp TTTCCCGGGEEEEEETT--------CHHHHHHHHHTTCCCGGGEEEECSTTSBTTBBTTEEESSSSEEEEEEEEEEEECC
T ss_pred CCCCCCHHHEEEEEECC--------CHHHHHHHHHCCCCCHHHEEECCCCCCCCCCCCCCHHCCCCCCCCCCEEEEEECC
T ss_conf 73488789968888278--------7899999987319989994436765555654657011489828868756888347
Q ss_pred CCCCC--CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99887--7778899997269842101122237999634589884446742899999981999875565309999999999
Q 002583 150 GNRDA--ASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQA 227 (904)
Q Consensus 150 ~~~~~--~~~~~~~~~~~lEiwNlVf~q~~~~~~g~l~~L~~~~iDtG~GlERl~~vlq~~~s~y~td~f~p~~~~i~~~ 227 (904)
+.+.+ .+.+++|++|||||||||||||||+++|+|.|||+||||||||||||+|||||++||||||+|.|||++++++
T Consensus 190 ~~~~~g~~~~~~~d~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmGLERla~vlQg~~snYdtDlf~pii~~i~~~ 269 (441)
T 3hy0_A 190 DHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKV 269 (441)
T ss_dssp TTSCCCCTTSTTTTSSSEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCSSGGGSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 54478877777788997689733343302224899621289984326978999999982998653316699999999998
Q ss_pred HCCCCCCCCCCCCCCHHCHHHHHHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 49998889789986100000556645201020112418985489896247899999999997766099864022479999
Q 002583 228 TGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIV 307 (904)
Q Consensus 228 ~~~~~y~g~~~~~~~~~~~~~~r~iaDH~R~~~~~i~dg~~P~n~grgyvlRri~RRa~~~~~~~l~~~~~~l~~l~~~~ 307 (904)
++.. |. .+.++||||||+||++|||+||++|||+|||||||||||||+|+++ +||++.|||++||+++
T Consensus 270 ~g~~-~~----------~~~s~rvIADH~R~~~f~iaDGv~PsNeGrGYVLRRilRRAvr~g~-~Lg~~~~fl~~Lv~~v 337 (441)
T 3hy0_A 270 TGAT-DL----------SNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGN-MLGAKETFFYKLVGPL 337 (441)
T ss_dssp HTCC-CT----------TCHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHH-HHTCCSCCGGGGHHHH
T ss_pred HCCC-CC----------CCCEEEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCCCHHHHHHHH
T ss_conf 4998-65----------6631678605677789987057655788863169999999999999-8399975277799999
Q ss_pred HHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHEECCCCCCHHHHHHHHHHCCC
Q ss_conf 99827878344760999999999999999999999999999999862299898034321004679996789999999198
Q 002583 308 VKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGL 387 (904)
Q Consensus 308 ~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~~~~~~g~~~f~Lydt~G~P~dl~~~~a~e~g~ 387 (904)
++.|++.||||.++++.|.+||..||++|.+||++|+++|++.+++.+.+.|||++||+||||||||+|||++||+|+|+
T Consensus 338 ~~~m~~~yPeL~~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~~~~~~~l~g~~af~LyDTyGfP~dLt~eia~e~g~ 417 (441)
T 3hy0_A 338 IDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRERNI 417 (441)
T ss_dssp HHHHGGGGHHHHHTHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHSCCSSEECHHHHHHHHHHHCCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCC
T ss_conf 99974255587860999999999999999999998899999999981489889898775032579898999999998699
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 329664999999999985863
Q 002583 388 LVDIEGFNNAMDEARERSRSA 408 (904)
Q Consensus 388 ~vd~~~f~~~~~~~~~~sr~~ 408 (904)
+||+++|+++|++||++||++
T Consensus 418 ~vD~~~F~~~m~~qr~rar~~ 438 (441)
T 3hy0_A 418 KVDEAGFEAAMEEQRRRAREA 438 (441)
T ss_dssp EECHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHC
T ss_conf 406899999999999999743
No 5
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=1.00 E-value=1 Score=409.83 Aligned_cols=225 Identities=23% Similarity=0.271 Sum_probs=204.8
Q ss_pred CCCCCCCCEEEEEEEECCEEEEEECCCCEEEEEEECEEEEECCCCEECEEEEEECCCEEEEEEEEEEECCEEEEEEEEEC
Q ss_conf 66310013279999848825542029980899950015898039842100179725703999979997999999997304
Q 002583 441 FIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTE 520 (904)
Q Consensus 441 Y~~~~~~~a~Vl~i~~~~~~~~~~~~~~~~~ivLd~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~ 520 (904)
-.|..+++|+|+++..+ ++.+.|+||+|||||||||||+|+|+| ..++|.+|++.+|.++|++.
T Consensus 10 d~y~~~~~a~V~~~~~~---------~~~~~vvLd~T~FYpegGGQ~~D~G~i----~~~~V~~v~~~~g~i~H~~~--- 73 (241)
T 3kew_A 10 DQYIKEFKGEIIEVKEI---------DGKFHVLLDQTAFFPGGGGQMGDLGLI----DGIKVLDVYEEEGKVYHVLE--- 73 (241)
T ss_dssp CTTCCEEEECEEEEEEE---------TTEEEEEESEECCCCCBTTBCCCCEEE----TTEEEEEEEEETTEEEEEES---
T ss_pred CCCCCEEEEEEEEEEEC---------CCEEEEEEECCCCCCCCCCCCCCEEEE----EEEEEEEEEEECCEEEEEEC---
T ss_conf 95000658999999956---------985999980885027999999988999----22899999996999999978---
Q ss_pred CCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 77656899889998435555556544149999999999880994010113436995799931899999979999999999
Q 002583 521 GAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVN 600 (904)
Q Consensus 521 ~~~~l~~G~~V~~~VD~~rR~~~m~~HTA~HLL~~ALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN 600 (904)
+.+.+|+.|.+.|||+||+.+|++|||+|||++|++++||.+ +.|+++.++++||||+ .+++++++.+||++||
T Consensus 74 --~~l~~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~--~~G~~v~~~~~r~Df~--~~lt~e~l~~IE~~vn 147 (241)
T 3kew_A 74 --KEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGAN--TCGFHLGKEISTVDIV--GFLDEKTIREAEKEAN 147 (241)
T ss_dssp --SCCCCCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEECSSCEEEEEE--SCCCHHHHHHHHHHHH
T ss_pred --CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCC--EEECCCCCCEEEEEEC--CCCCHHHHHHHHHHHH
T ss_conf --867999889999887875668888799999999999877997--4855155882899989--9999999999999999
Q ss_pred HHHHCCCCEEEEECCHHHHHHHCCCHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCE
Q ss_conf 99980799699990888896101702110786999869999667620002598886445303320267775541243557
Q 002583 601 EQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAF 680 (904)
Q Consensus 601 eiI~~~lpV~~~~~~~eeA~~~~~~~~~~~e~y~d~VRvV~Ig~~~~~~~~~~~~~~~~~~~~e~CgGTHV~nTgeIg~f 680 (904)
++|++|+||.+.+++++||++++ ++++ +++|++.||+|+|+ ++|.++||||||+|||+||.|
T Consensus 148 ~~I~~~~pV~~~~~~~~eA~~~~-~~~~-~e~~~~~VRvv~ig----------------~~~~~~CgGtHV~~TgeIg~f 209 (241)
T 3kew_A 148 RLIFENLEVKSYAPSKKELKKVK-TRRA-LPKTDEEIRIVEIV----------------GLDLNACCGVHPRNTRDLQVI 209 (241)
T ss_dssp HHHHHTCBEEEECCCTTTTTTCC-CSSC-CCCCSSCCCEEEET----------------TTEEEECCSCCCSBSGGGCCE
T ss_pred HHHHCCCCEEEEECCHHHHHHCC-HHHC-CCCCCCCEEEEEEC----------------CEEEECCCCCCCCCHHHCCCE
T ss_conf 99984998899984899997648-1114-87569948999999----------------967873799774788464989
Q ss_pred EEEEEEECCCCCEEEEEEECHHHHHH
Q ss_conf 99855423787149999915169999
Q 002583 681 ALLSEEGIAKGIRRITAVTTGLAYKA 706 (904)
Q Consensus 681 kI~~~~~~~~G~~RI~~vtG~~A~~~ 706 (904)
+|++.++++ |.+||+|+||.+|++.
T Consensus 210 kI~~~~~~~-~~~RI~~~~G~~a~~~ 234 (241)
T 3kew_A 210 KIRRWEKHK-NATRIEYVAGNRAVSE 234 (241)
T ss_dssp EEEEEEEET-TEEEEEEEEGGGGC--
T ss_pred EEEEEECCC-CCEEEEEEECHHHHHC
T ss_conf 999984327-9699999977799741
No 6
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=1.00 E-value=1 Score=370.19 Aligned_cols=201 Identities=29% Similarity=0.372 Sum_probs=182.0
Q ss_pred CCCCCCCEEEEEEEECCEEEEEECCCCEEEEEEECEEEEECCCCEECEEEEEECCCEEEEEEEEEEE-CCEEEEEEEEEC
Q ss_conf 6310013279999848825542029980899950015898039842100179725703999979997-999999997304
Q 002583 442 IWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIY-GGFVIHIGSLTE 520 (904)
Q Consensus 442 ~~~~~~~a~Vl~i~~~~~~~~~~~~~~~~~ivLd~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~-~g~i~H~~~~~~ 520 (904)
.|..+++|+|+++. + + +|+||+|||||||||||+|+|+|. + ++|.+|++. +|.++|++.. .
T Consensus 13 ~y~~~~~a~V~~~~-~----------~--~vvld~T~Fype~GGQ~~D~G~i~--~--~~V~~v~~~~~~~i~H~~~~-~ 74 (216)
T 2e1b_A 13 AYLKEAKGRVLEIR-D----------N--AILLDQTIFYPTGGGQPHDRGTIN--G--VEVLDVYKDEEGNVWHVVKE-P 74 (216)
T ss_dssp TTCCEEEECBCCCC-S----------S--CCCBSCCCSCCCCTTCCCCCEEET--T--EEEEEEECCTTCCCEEEESC-G
T ss_pred CCCCEEEEEEEEEE-C----------C--EEEEECCCCCCCCCCCCCCEEEEC--C--EEEEEEEECCCCEEEEEECC-C
T ss_conf 65233368999981-9----------9--899847873288999999989994--4--89999998769989999914-7
Q ss_pred CCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC-EEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 77656899889998435555556544149999999999880994-01011343699579993189999997999999999
Q 002583 521 GAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDH-VDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIV 599 (904)
Q Consensus 521 ~~~~l~~G~~V~~~VD~~rR~~~m~~HTA~HLL~~ALr~vlg~~-v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~v 599 (904)
+.+.+|++|.+.|||+||+.+|++|||+|||++|++++||.+ +.+.|+++.++++||||+++.+++++ +.+||++|
T Consensus 75 --~~l~~g~~v~~~vD~~rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~~~lt~e-l~~IE~~v 151 (216)
T 2e1b_A 75 --EKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKY-KEQIISLF 151 (216)
T ss_dssp --GGCCSSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSCGGGG-HHHHHHHH
T ss_pred --CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEECCCCCCHH-HHHHHHHH
T ss_conf --875999999999878998789988689999999999972986420665227178189998579989889-99999999
Q ss_pred HHHHHCCCCEEEEECCHHHHHHHCCCHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 99998079969999088889610170211078699986999966762000259888644530332026777554124355
Q 002583 600 NEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEA 679 (904)
Q Consensus 600 NeiI~~~lpV~~~~~~~eeA~~~~~~~~~~~e~y~d~VRvV~Ig~~~~~~~~~~~~~~~~~~~~e~CgGTHV~nTgeIg~ 679 (904)
|++|++|+||.+.++++ +|+|+|| ++|.++||||||+||++||.
T Consensus 152 n~~I~~~~pv~~~~~~~--------------------vRvv~ig----------------~~~~~~CgGtHV~~TgeIg~ 195 (216)
T 2e1b_A 152 NKYVDEGGEVKIWWEGD--------------------RRYTQIR----------------DFEVIPCGGTHVKDIKEIGH 195 (216)
T ss_dssp HHHHHHCCBEEEEESSS--------------------CEEEEET----------------TSCEECCCSCCCSBGGGTCC
T ss_pred HHHHHCCCCEEEEECCC--------------------EEEEEEC----------------CEEEECCCCCCCCCHHHCCE
T ss_conf 99996099789999088--------------------7999999----------------97878889977361755764
Q ss_pred EEEEEEEECCCCCEEEEEEE
Q ss_conf 79985542378714999991
Q 002583 680 FALLSEEGIAKGIRRITAVT 699 (904)
Q Consensus 680 fkI~~~~~~~~G~~RI~~vt 699 (904)
|+|++.+++++|++||++.-
T Consensus 196 fkI~~~~~~~~g~rRi~~~l 215 (216)
T 2e1b_A 196 IKKLKRSSIGRGKQRLEMWL 215 (216)
T ss_dssp EEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEECCCEEEEEEEE
T ss_conf 99999748839989999997
No 7
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=1.00 E-value=1 Score=249.32 Aligned_cols=218 Identities=17% Similarity=0.249 Sum_probs=177.9
Q ss_pred CCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 68998899984355555565441499999999998809940101134369957999318999999799999999999998
Q 002583 525 FSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIK 604 (904)
Q Consensus 525 l~~G~~V~~~VD~~rR~~~m~~HTA~HLL~~ALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNeiI~ 604 (904)
+..+..|...-..+.+...+.+|||+|||++|++++||.+..+.|+.+ ++++||||++..++|++++.+||++||++|.
T Consensus 53 l~~d~~v~~~~~~~~~g~~~~~HSa~HlL~~A~~~~~~~~~~~~g~~~-~~g~~~Df~~~~~~t~edl~~IE~~m~~iI~ 131 (645)
T 1nyr_A 53 LETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVI-EGGFYYDFDIDQNISSDDFEQIEKTMKQIVN 131 (645)
T ss_dssp CCSCBCCCEECTTSHHHHHHHHHHHHHHHHHHHHHHSSSCEECCCCEE-TTEEEEEEECSSCCCSTTHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC-CCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 689986998635656479999999999999999997699689978745-8822899607999999999999999999998
Q ss_pred CCCCEEEEECCHHHHHHHCCCH----HHCCCCCC-CCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 0799699990888896101702----11078699-986999966762000259888644530332026777554124355
Q 002583 605 AELDVFSKEATLAEAKCINGLR----AVFGEVYP-DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEA 679 (904)
Q Consensus 605 ~~lpV~~~~~~~eeA~~~~~~~----~~~~e~y~-d~VRvV~Ig~~~~~~~~~~~~~~~~~~~~e~CgGTHV~nTgeIg~ 679 (904)
+|+||++.+++++||+++++.. .+...... +.||++++| ++ +++||||||+|||+|+.
T Consensus 132 ~~~pi~~~~~~~~eA~~~f~~~~yk~~li~~~~~~~~vrv~~~g----------------~~-~dlC~G~Hv~~Tg~i~~ 194 (645)
T 1nyr_A 132 ENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQG----------------DF-TDLCRGVHVPSTAKIKE 194 (645)
T ss_dssp TTCCEEEEECTTTHHHHHCSSCHHHHHHHCCCSSSCCCEEEEET----------------TE-EEECCSCCCSCGGGCCE
T ss_pred HCCCEEEEEECHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEEEC----------------CE-EEECCCCCCCCCCCCCE
T ss_conf 68986999954999998875373157886328989816999979----------------99-99638866687777736
Q ss_pred EEEEEEEE-------CCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH--HHHH-CCCCCCCCCCH
Q ss_conf 79985542-------37871499999151699999999999999999840235226999999--8741-18996578965
Q 002583 680 FALLSEEG-------IAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVAS--LKSK-VDGAAIPAPKK 749 (904)
Q Consensus 680 fkI~~~~~-------~~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~~~~~~~~~l~k~i~~--l~~~-~~~~~~~~~~~ 749 (904)
|+|+++++ .++.++||++++++... +..++++.++++..++|+++++++.. +.+. .+|+..|+|.+
T Consensus 195 fkl~~~~~a~~~~~~~~~~l~ri~g~~~~~~~----~l~~~~~~l~ea~~rdhr~lg~~l~l~~~~~~~~~G~~~~lP~g 270 (645)
T 1nyr_A 195 FKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKK----ELKAHLQMLEERKERDHRKIGKELELFTNSQLVGAGLPLWLPNG 270 (645)
T ss_dssp EEEEEEEEEETTSCSSSCEEEEEEEEEESSHH----HHHHHHHHHHHHHHTCHHHHHHHTTCEEEETTTEEEEEEECHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCEEEECCCH
T ss_conf 99832076688877677999999998569988----86555665533201308998652205775255789605889788
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 679999999999999
Q 002583 750 ADIRAKIALLQNQVR 764 (904)
Q Consensus 750 ~~l~~~i~~l~~~~~ 764 (904)
..+.+.++++.++.-
T Consensus 271 ~~~~~~l~~~ir~~~ 285 (645)
T 1nyr_A 271 ATIRREIERYIVDKE 285 (645)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 899999999999999
No 8
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=1.00 E-value=1 Score=242.34 Aligned_cols=204 Identities=17% Similarity=0.266 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
Q ss_conf 55556544149999999999880994010113436995799931899999979999999999999807996999908888
Q 002583 539 RRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAE 618 (904)
Q Consensus 539 rR~~~m~~HTA~HLL~~ALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNeiI~~~lpV~~~~~~~ee 618 (904)
.+...+.+|||+|||++|++++||....+.|+++. +++||||++..++|++++.+||++||++|++|+||++.++++++
T Consensus 65 ~~~~~~~~HSa~HlL~~Al~~~~~~~~~~~G~~i~-~gfy~Df~~~~~~t~edl~~IE~~m~~iI~~~~~v~~~~~~~~e 143 (642)
T 1qf6_A 65 EEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVID-NGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHE 143 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCEET-TEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEEECCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC-CEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHH
T ss_conf 77899998799999999999868994799788668-80599986899999999999999999999739987999954999
Q ss_pred HHHHCCC------HHHC-CCCCC-CCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEEC--
Q ss_conf 9610170------2110-78699-986999966762000259888644530332026777554124355799855423--
Q 002583 619 AKCINGL------RAVF-GEVYP-DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-- 688 (904)
Q Consensus 619 A~~~~~~------~~~~-~e~y~-d~VRvV~Ig~~~~~~~~~~~~~~~~~~~~e~CgGTHV~nTgeIg~fkI~~~~~~-- 688 (904)
|++++.. ..+. ++.++ +.||++++| ++ .++|+||||+|||+|+.|+|+++++.
T Consensus 144 A~~~~~~~~e~yk~~li~~~~~~~~~v~vy~~g----------------~~-~dlC~GpHv~~Tg~I~~fkl~~~~~~yw 206 (642)
T 1qf6_A 144 ARETFANRGESYKVSILDENIAHDDKPGLYFHE----------------EY-VDMCRGPHVPNMRFCHHFKLMKTAGAYW 206 (642)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTCCCEEEEET----------------TE-EECCSSCCCSBGGGCCSEEEEEEEEEEG
T ss_pred HHHHHHHHCCCCHHHHHHCCCCCCCCEEEEEEC----------------CE-EEECCCCCCCCCCCCEEEEEEEECCCCC
T ss_conf 999866507740023331226789826999989----------------99-8946887668777542489865303544
Q ss_pred -----CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH--HHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf -----787149999915169999999999999999984023522699999--9874118996578965679999999999
Q 002583 689 -----AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVA--SLKSKVDGAAIPAPKKADIRAKIALLQN 761 (904)
Q Consensus 689 -----~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~~~~~~~~~l~k~i~--~l~~~~~~~~~~~~~~~~l~~~i~~l~~ 761 (904)
+..++||++++.+. ..+..++++.++++..++|+++++++. .+.+..+|+..|+|.+..+.+.|+++.+
T Consensus 207 ~g~~~~~~l~r~~g~~~~~----~~~l~~~~~~~eea~~rdH~~lg~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~r 282 (642)
T 1qf6_A 207 RGDSNNKMLQRIYGTAWAD----KKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVR 282 (642)
T ss_dssp GGCTTSCEEEEEEEEECSS----HHHHHHHHHHHHHHHTTCHHHHHHHTTCEECCTTSTTCCEECHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCC----HHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHH
T ss_conf 6766775157640345576----567766653330135478999998547604454789737889709999999999999
Q ss_pred HHH
Q ss_conf 999
Q 002583 762 QVR 764 (904)
Q Consensus 762 ~~~ 764 (904)
+..
T Consensus 283 ~~~ 285 (642)
T 1qf6_A 283 SKL 285 (642)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 9
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=1.00 E-value=1 Score=213.37 Aligned_cols=169 Identities=18% Similarity=0.310 Sum_probs=136.1
Q ss_pred ECCEEEEEEEEECCCCCCCCCCEEEEEECHHHH-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEECCCCC
Q ss_conf 799999999730477656899889998435555-5565441499999999998809940101134369957999318999
Q 002583 508 YGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRR-KLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKP 586 (904)
Q Consensus 508 ~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR-~~~m~~HTA~HLL~~ALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~ 586 (904)
.+|.+++. . ..+..|+.|.. |+++.+ ...|.+|||+|||++|++++||......| +..++++||||++..+
T Consensus 40 vNg~l~dL---~---~~l~~~~~ve~-it~~~~~g~~~~~HS~~HlL~~A~~~~~~~~~~~~g-~~~~~g~y~d~~~~~~ 111 (224)
T 1tke_A 40 VNGELVDA---C---DLIENDAQLSI-ITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIG-PVIDNGFYYDVDLDRT 111 (224)
T ss_dssp ETTEEEET---T---CCBCSCEEEEE-ECTTSHHHHHHHHHHHHHHHHHHHHHHSTTCEECCC-CEETTEEEEEEECSSC
T ss_pred ECCEEECC---C---EECCCCCEEEE-EECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCCCEEEEEEECCCC
T ss_conf 99999306---3---67489986999-845736689999999999999999998799679878-8458857999837998
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCC------HHHCCC-C-CCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 999799999999999998079969999088889610170------211078-6-99986999966762000259888644
Q 002583 587 VDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL------RAVFGE-V-YPDPVRVVAIGRKVEDLLADPENKEW 658 (904)
Q Consensus 587 lt~eel~~IE~~vNeiI~~~lpV~~~~~~~eeA~~~~~~------~~~~~e-~-y~d~VRvV~Ig~~~~~~~~~~~~~~~ 658 (904)
+|++++.+||++||++|++|+||++.+++++||++++.. ..++++ . +.+.||++++|
T Consensus 112 ~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g--------------- 176 (224)
T 1tke_A 112 LTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHE--------------- 176 (224)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEET---------------
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCCHHHHHHCCCCCCCCEEEEEEEC---------------
T ss_conf 99999999999999998479987999966999999998749915799850126889806799828---------------
Q ss_pred CCEEEEECCCCCCCCCCCCCCEEEEEEEEC-------CCCCEEEEEEECH
Q ss_conf 530332026777554124355799855423-------7871499999151
Q 002583 659 LSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIRRITAVTTG 701 (904)
Q Consensus 659 ~~~~~e~CgGTHV~nTgeIg~fkI~~~~~~-------~~G~~RI~~vtG~ 701 (904)
++ .++|+||||+|||+|+.|+|+++++. +++++||++++++
T Consensus 177 -~~-~dlC~G~Hv~~Tg~i~~fkl~~~~~~yw~g~~~~~~lqRiyg~a~~ 224 (224)
T 1tke_A 177 -EY-VDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWA 224 (224)
T ss_dssp -TE-EEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEEECC
T ss_pred -CE-EEECCCCCCCCCCCCCEEEEEEECCEEECCCCCCCEEEEEEEECCC
T ss_conf -98-8977886777675363579987256067378888316999876269
No 10
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=1.00 E-value=1 Score=199.67 Aligned_cols=145 Identities=21% Similarity=0.191 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECC-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
Q ss_conf 556544149999999999880994010113-4369957999318999999799999999999998079969999088889
Q 002583 541 KLIAPNHTCTHMLNFALREVLGDHVDQKGS-VVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEA 619 (904)
Q Consensus 541 ~~~m~~HTA~HLL~~ALr~vlg~~v~q~Gs-~v~~d~~r~Df~~~~~lt~eel~~IE~~vNeiI~~~lpV~~~~~~~eeA 619 (904)
...|++|||+|||++|++++||.++.+.++ .+.++++|+||++...+|++++.+||++||++|++|+||++.++++++|
T Consensus 3 g~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~~t~e~l~~IE~~~n~~I~~~~pi~~~~~~~~eA 82 (157)
T 1v4p_A 3 SIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEA 82 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHH
T ss_conf 03777677999999999998497837812745647983899980999999999999999999998199979999589999
Q ss_pred HHHCCCHHHCCCCCC---CCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEE-CCCCCEEE
Q ss_conf 610170211078699---98699996676200025988864453033202677755412435579985542-37871499
Q 002583 620 KCINGLRAVFGEVYP---DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEG-IAKGIRRI 695 (904)
Q Consensus 620 ~~~~~~~~~~~e~y~---d~VRvV~Ig~~~~~~~~~~~~~~~~~~~~e~CgGTHV~nTgeIg~fkI~~~~~-~~~G~~RI 695 (904)
.++++...+....++ +.||+|+|| ++|+++||||||+|||+|+.|+|+++++ .+++..||
T Consensus 83 ~~~f~~~~~~~~~~~~~~~~vrv~~ig----------------~~~~~~C~GtHv~~Tg~I~~fki~~~~~~~~~~~l~v 146 (157)
T 1v4p_A 83 EKMFGEDMYDLFPVPEDVRILKVVVIE----------------DWNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEI 146 (157)
T ss_dssp HHHHGGGGSCSSCCCTTCCEEEEEEET----------------TTEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEE
T ss_pred HHHHCCCCCCCCCCCCCCCEEEEEEEC----------------CEEEECCCCCCCCCHHHCCEEEEEEEEECCCCCEEEE
T ss_conf 976483435543488778769999989----------------9368489998668721265299999980378848999
Q ss_pred EEEECH
Q ss_conf 999151
Q 002583 696 TAVTTG 701 (904)
Q Consensus 696 ~~vtG~ 701 (904)
.+..++
T Consensus 147 ~~~v~~ 152 (157)
T 1v4p_A 147 HFELLE 152 (157)
T ss_dssp EEEEC-
T ss_pred EEEEEE
T ss_conf 999843
Done!