RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 002583
(904 letters)
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase.
Length = 936
Score = 1551 bits (4019), Expect = 0.0
Identities = 606/906 (66%), Positives = 697/906 (76%), Gaps = 26/906 (2%)
Query: 1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 60
MNQ+KPIFLGTADPNT L KL RA NTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS
Sbjct: 52 MNQFKPIFLGTADPNTPLRKLPRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 111
Query: 61 FGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRV 120
FGDYFK EAI WAWELLTKVY LPADRLYATYFGGDEK APD+EAR IWL +LP RV
Sbjct: 112 FGDYFKKEAIGWAWELLTKVYGLPADRLYATYFGGDEK--QAPDDEARAIWLDYLPEERV 169
Query: 121 LPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRES 180
LPFGCKDNFWEMGDTGPCGPCSEIHYDR G RDAA LVNNDDP IEIWN+VFIQFNRE+
Sbjct: 170 LPFGCKDNFWEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREA 229
Query: 181 DGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGAD 240
DGSLKPLPAKHVDTG+G ERL SILQNK SNYDTD+FMPIFDAIQ+ATGARPY+GKVGA+
Sbjct: 230 DGSLKPLPAKHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAE 289
Query: 241 DADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFF 300
D D+VDMAYRVVADHIRTLSFAIADG P NEGR YVLRR+LRRAVRYG +L A++GFF
Sbjct: 290 DDDRVDMAYRVVADHIRTLSFAIADGVVPSNEGRGYVLRRLLRRAVRYGRLLLGAEEGFF 349
Query: 301 NGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GK 357
LV +VV++ GDVFPE+K+ E I EIIA EE SFGKTL KGIEKFKKA + G
Sbjct: 350 PALVEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKKALAAAKANGGP 409
Query: 358 VLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAI 417
VLSG+DAF+L+DTYGFP+DLT+LMAEERG+ VD+EGF AM+EARERSR+A K GGAI
Sbjct: 410 VLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGGAI 469
Query: 418 VMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASS 477
+ A+AT+ L K+GV ATDD K+ W DH++V+KAI TG F+ESV G+EVGIVL +
Sbjct: 470 ELAAEATSWLQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESVSEGDEVGIVLDKT 529
Query: 478 SFYAEQGGQIFDEGFIEGLFG-SFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVD 536
SFYAE GGQI D G +EG G V +VQ GGFV+HIG++TE G SVG+ V CKVD
Sbjct: 530 SFYAESGGQIGDTGVLEGSGGAVVEVSDVQKAGGFVLHIGTVTE--GSVSVGDAVTCKVD 587
Query: 537 YDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIE 596
YDRR+ IAPNHT TH+LN AL+EVLGDHVDQKGS+V EKLRFDFSHGKP+ PE LR +E
Sbjct: 588 YDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKPMTPEELREVE 647
Query: 597 SIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENK 656
S+VNE I L V +KE LA+AK INGLRAVFGE YPDPVRVV++G
Sbjct: 648 SLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVGGV----------- 696
Query: 657 EWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKE 716
S ELCGGTH+SNT EAEAF LLSEEGIAKGIRRITAVT G A +A AA SLE+E
Sbjct: 697 ----YSMELCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERE 752
Query: 717 VDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQ 776
+D A K+EGS LEK VASLKS+VD A IPA KK +IRA+++ LQ ++R AQK+ A +
Sbjct: 753 LDSALKVEGSDLEKKVASLKSRVDAAVIPAAKKEEIRARVSALQKELRAAQKEAAALRAK 812
Query: 777 KAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQK-GMPVMVFSTDETTN 835
AV ATE A A S GK ++R++VG+DAAA++EA KVI + +V S+DE
Sbjct: 813 LAVAKATELASKALSAGKSVLVARLDVGVDAAALKEAAEKVIAKLGDPAAVVLSSDEEKG 872
Query: 836 KAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLA 895
K + A VP + K L+ +WL A+ L G G GK G A GQG DA ++ A++ A
Sbjct: 873 KVSLVAAVPPGVVK-KGLKAGKWL-GAIAKLCGGGGGGKPGFAQGQGRDAEKLDAALEKA 930
Query: 896 AEFAAM 901
FA
Sbjct: 931 RAFAVA 936
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 922 bits (2386), Expect = 0.0
Identities = 377/912 (41%), Positives = 528/912 (57%), Gaps = 98/912 (10%)
Query: 1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 60
M Q+K FLG P RA +QKCIR NDL++VG HHTFFEMLGN+S
Sbjct: 43 MVQFKDYFLGQEKP-----PYPRATTSQKCIRT----NDLENVGYTARHHTFFEMLGNFS 93
Query: 61 FGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK--FLPAS 118
FGDYFK EAIEWAWELLT V LP ++LY T + D+EA DIW K +P
Sbjct: 94 FGDYFKEEAIEWAWELLTSVLGLPKEKLYVTVY--------EDDDEAYDIWKKEIGVPPE 145
Query: 119 RVLPFGCKDNFWEMGDTGPCGPCSEIHYDRT--GNRDAASLVNNDDPTCIEIWNIVFIQF 176
R++ G KDNFW MGDTGPCGPCSEI YDR D IEIWN+VF+QF
Sbjct: 146 RIIRIGKKDNFWSMGDTGPCGPCSEIFYDRGEEYWGGPPGSPEEDGDRYIEIWNLVFMQF 205
Query: 177 NRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGK 236
NR+ DG+L PLP K++DTG+G ER+ ++LQ SNY+TD+F P+ AI++ TG +
Sbjct: 206 NRDEDGNLTPLPKKNIDTGMGLERIAAVLQGVHSNYETDLFRPLIKAIEELTGVKYED-- 263
Query: 237 VGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQ 296
D+++RV+ADHIR ++F IADG P NEGR YVLRRILRRAVR+G +L +
Sbjct: 264 ---------DVSFRVIADHIRAVAFLIADGVLPSNEGRGYVLRRILRRAVRHGR-LLGIK 313
Query: 297 DGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDV-Q 355
+ F LV +V+ MGD +PELK+++ I +++ AEE F KTL +G++ ++A +
Sbjct: 314 EPFLYKLVPVVIDEMGDAYPELKEKQDLIEKVLKAEEERFLKTLERGLKLLEEALAKLKA 373
Query: 356 GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGG 415
GKVLSG+DAF L+DTYGFPLDLT +A ERGL VD EGF AM+E RER+R+A+ +
Sbjct: 374 GKVLSGEDAFKLYDTYGFPLDLTAEIARERGLTVDEEGFEAAMEEQRERARAARKFKGDY 433
Query: 416 AIVMDADATAALHKRGVLATDDSFKFIWFQD--HKSVIKAIYTGSEFIESVVPGNEVGIV 473
+ + L D + +F+ + ++ + A++ E ++S G EV +V
Sbjct: 434 NALEE------------LLDDLATEFVGYDTLEAEAKVLALFVDGESVDSAKAGEEVEVV 481
Query: 474 LASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQ-IYGGFVIHIGSLTEGAGRFSVGEEVI 532
L + FYAE GGQ+ D G IE G F V + Q G ++H G + EG VG+EV
Sbjct: 482 LDKTPFYAESGGQVGDTGVIED-GGVFEVTDTQKPPNGLIVHRGKVEEGE--LKVGDEVT 538
Query: 533 CKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHL 592
+VD +RR+ IA NH+ TH+L+ ALREVLG+HV Q GS+V P++LRFDFSH + + PE L
Sbjct: 539 AEVDEERRRAIARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSHFEALTPEEL 598
Query: 593 RRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLAD 652
R+IE +VNE+I+ L V ++E ++ EAK + G A+FGE Y D VRVV+IG
Sbjct: 599 RKIEDLVNEKIRENLPVETEEMSIEEAKKM-GAMALFGEKYGDEVRVVSIG--------- 648
Query: 653 PENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACS 712
S ELCGGTH+SNT + F ++SE G+A G+RRI AV TG A A E
Sbjct: 649 -------DFSIELCGGTHVSNTGDIGLFKIVSESGVAAGVRRIEAV-TGEA--ALEYLNE 698
Query: 713 LEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAE 772
E + + + A LK+K ++ ++ L ++++ +K++ +
Sbjct: 699 QEALLKELA-----------ALLKAKPS----------ELPERVEALLEELKELEKELEQ 737
Query: 773 ENLQKAVKVATETAEAAAS-NGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTD 831
+ A A + A NG ++VE G+DA A+R + ++ G V+V +T
Sbjct: 738 LKAKLAAAAAGDLLAQAKEVNGVKVLAAQVE-GVDAKALRTLADDLKDKLGSGVVVLATV 796
Query: 832 ETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPA 891
E K + V K K L+ + + + + G+ G G+ +A G D A++ A
Sbjct: 797 E-DGKVSLVVAVT-KDLTDKGLKAGDLVKELAKIVGGKGG-GRPDMAQAGGKDPAKLDEA 853
Query: 892 MDLAAEFAAMKL 903
+ E+ A KL
Sbjct: 854 LAAVKEWLAAKL 865
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 846 bits (2187), Expect = 0.0
Identities = 360/915 (39%), Positives = 508/915 (55%), Gaps = 94/915 (10%)
Query: 1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 60
M Q+KP F G P RA +QKCIR ND+D+VG HHTFFEMLGN+S
Sbjct: 47 MVQFKPYFTGGVTP-----PANRAVTSQKCIRT----NDIDNVGYTARHHTFFEMLGNFS 97
Query: 61 FGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPAS 118
FGDYFK EAIE+AWE LTKV LP ++LY T + D+ EA + W K +P
Sbjct: 98 FGDYFKEEAIEFAWEFLTKVLGLPKEKLYVTVYEDDD--------EAYNEWEKIIGIPPE 149
Query: 119 RVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAAS--LVNNDDPTCIEIWNIVFIQF 176
R++ G DNFWEMGD GPCGPCSEI YDR + D +EIWN+VF+Q+
Sbjct: 150 RIIRIGASDNFWEMGD-GPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQY 208
Query: 177 NR-ESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSG 235
NR DG+ PLP K++DTG+G ER+ ++LQ +NYDTD+F PI AI++ TG
Sbjct: 209 NRDPGDGNYTPLPKKNIDTGMGLERIAAVLQGVPTNYDTDLFRPIIKAIEKLTG------ 262
Query: 236 KVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKA 295
K +D + D+++RV+ADHIR+L+F IADG P NEGR YVLRRI+RRA+R+G L
Sbjct: 263 KKYGEDEEDPDVSFRVIADHIRSLAFMIADGVLPSNEGRGYVLRRIIRRALRHGKL-LGI 321
Query: 296 QDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDV- 354
++ F LV+ V+ MGD +PELK++E I+E++ EE F KTL +G++ +K +
Sbjct: 322 KEPFLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKLEEERFAKTLERGLKLLEKELAKLK 381
Query: 355 QGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAG 414
+ K L G+DAF L+DTYGFP++LT+ +AEERGL VD GF AM+ RER+R++ G
Sbjct: 382 KSKTLDGEDAFKLYDTYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRERARASAGSGEG 441
Query: 415 GAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVL 474
D + L + L DD + + ++ + + + G EV +VL
Sbjct: 442 AKESEDLELIDKLPETEFLGYDDLE-------MEFKVLVLFVDGKEVSELNEGQEVYVVL 494
Query: 475 ASSSFYAEQGGQIFDEGFIEGL-FGSFYVRNVQ-IYGGFVIHIGSLTEGAGRFSVGEEVI 532
+ FYAE GGQ+ D G+I G G F V +VQ + G ++H G + G VG+EV
Sbjct: 495 DQTPFYAESGGQVGDTGYIFGDGGGRFEVTDVQKVGNGVIVHKGKVESGE--LKVGDEVT 552
Query: 533 CKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHL 592
+VD +RR+ + NHT TH+L+ ALR+VLGDHV Q GS+V PEKLRFDFSH K + E L
Sbjct: 553 AEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAEEL 612
Query: 593 RRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLAD 652
+ IE +VNE I+ L V ++E L EAK G A+FGE Y D VRVV IG
Sbjct: 613 KEIERLVNEIIRENLPVKTEEMDLDEAKAK-GAMALFGEKYGDEVRVVEIG--------- 662
Query: 653 PENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACS 712
S ELCGGTH+SNT + F ++SEEGIA G+RRI AVT A + +
Sbjct: 663 -------DFSVELCGGTHVSNTGDIGLFKIISEEGIAAGVRRIEAVTGEAALEYLQE--- 712
Query: 713 LEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAE 772
+ LL++ + LK ++ K+ L ++++ +K++
Sbjct: 713 -----------QEDLLKEIASLLK-----------VPPELLPKVERLLEELKELEKELER 750
Query: 773 ---ENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVF- 828
+ + A+A G V+ G D +RE + ++ G V+V
Sbjct: 751 LKKKLAAAELADLLSNAKAEEIGGVKVLAKEVD-GADMKELREIADDLKKKLGSAVIVLA 809
Query: 829 STDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQV 888
S + K + V + D + +++ E + + G+ G G+ +A G G D ++
Sbjct: 810 SVAD--GKVSLVVAVSK--DLTDKVKAGELVKELAAIVGGKGG-GRPDMAQGGGKDPEKL 864
Query: 889 TPAMDLAAEFAAMKL 903
A++L E+ KL
Sbjct: 865 DEALELVIEWVKEKL 879
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP) [Protein synthesis, tRNA
aminoacylation].
Length = 851
Score = 747 bits (1930), Expect = 0.0
Identities = 330/894 (36%), Positives = 486/894 (54%), Gaps = 92/894 (10%)
Query: 1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 60
M Q+KPIF G P + R N Q CIR ND+++VG+ HHTFFEMLGN+S
Sbjct: 38 MAQFKPIFTGIVKPPSN-----RLVNAQPCIRL----NDIENVGRTARHHTFFEMLGNFS 88
Query: 61 FGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRV 120
FGDYFK EAI +AWELLT V L +RLY T + DE+A + +PA R+
Sbjct: 89 FGDYFKEEAIAFAWELLTSVLGLDKERLYVTVYEDDEEAYEIWEK-------HGIPAERI 141
Query: 121 LPFGCKDNFWEMGDTGPCGPCSEIHYDR---TGNRDAASLVNNDDPTCIEIWNIVFIQFN 177
+ G KDNFW+MGD GPCGPC+EI+YDR G + ++ +E+WN+VF+QFN
Sbjct: 142 IRCGDKDNFWDMGD-GPCGPCTEIYYDRGEFVGGKPGEPEFFEENDRYVEVWNLVFMQFN 200
Query: 178 RESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKV 237
R+ DG+ PLP K++DTG+G ER ++LQ +NYDTD+F+P+ + I++ TG + S
Sbjct: 201 RDPDGNYTPLPKKNIDTGMGLERFVAVLQGVPTNYDTDIFLPLIEKIEEITGVKYDSNNA 260
Query: 238 GADDADKVD--MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKA 295
G D +V+ + RV+ADH R L+F +ADG P NEGR YVLRR++RRA+R+G + L
Sbjct: 261 GIMDEKRVEDLRSLRVIADHTRALAFMLADGVVPSNEGRGYVLRRLIRRALRHGKK-LGL 319
Query: 296 QDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ 355
++ F LV +++V+GD +PELK+++ + +I+ EE F KTL +G+ F+K + +
Sbjct: 320 KEAFLYKLVPTLIEVLGDYYPELKEKQEFVEQILELEEERFAKTLERGLRLFEKLLKKLG 379
Query: 356 GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQA-- 413
K L G+DAF L+DTYGFP++LT+ +AEERGL VDI GF M E RERS++A +
Sbjct: 380 KKELDGEDAFKLYDTYGFPVELTKEIAEERGLTVDIPGFETLMAEQRERSKAASQTISFE 439
Query: 414 --GGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKS--VIKAIYTGSEFIESVVPGNE 469
A+ AT +F+ ++D + + ++ + ++ G
Sbjct: 440 LQEIALANVYPAT---------------EFLGYEDLEFEAKVIGLFEDGKPVDEAEAGQS 484
Query: 470 VGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGE 529
V ++L + FYAE GGQI D G++ G F V +VQ G V H G + G+ VG+
Sbjct: 485 VYVILDQTPFYAESGGQIGDTGYLIANDGKFRVVDVQKPNGVVFHFGEVEGGS--LKVGD 542
Query: 530 EVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDP 589
+VI +D RR I NH+ TH+L+ AL++VLG+HV Q GS+V +KLRFDFSH + +
Sbjct: 543 KVIAVIDEKRRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRALTR 602
Query: 590 EHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDL 649
E L +IE +VNEQI A + + L EAK FGE Y + VRVV++G
Sbjct: 603 EELEKIEDLVNEQILANIPIKVIFMDLDEAKAKGAFAL-FGEKYGEKVRVVSVG------ 655
Query: 650 LADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEA 709
+S ELCGGTH+ NT E F ++ E GIA G+RRI AVT A
Sbjct: 656 ----------DVSVELCGGTHVRNTGEIGLFKIVKESGIAAGVRRIEAVTGNAAI----- 700
Query: 710 ACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKK 769
+ + L++ LK ++ KI + + QK+
Sbjct: 701 ---------EYLNEQEDKLKELADILKVTP----------NELPKKIERFFEEWKALQKE 741
Query: 770 VAEENLQKAVKVATETAEAAAS-NGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVF 828
+ L+ A + E + A + NG + V+ D +++ ++ + G + V
Sbjct: 742 LESLKLKIADQKIDELKDKAETINGVKVLVEVVD-AKDMKSLKTMADRLKSKLGSAIYVL 800
Query: 829 STDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQG 882
++ +VC + +K ++ E + Q L G+ G G+ LA G
Sbjct: 801 ASFANGKVKLVCGVSNDVL--NKGIKAGELINQIAQVLGGK-GGGRPDLAQAGG 851
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A). Other tRNA
synthetase sub-families are too dissimilar to be
included. This family includes only alanyl-tRNA
synthetases.
Length = 551
Score = 730 bits (1886), Expect = 0.0
Identities = 278/545 (51%), Positives = 354/545 (64%), Gaps = 37/545 (6%)
Query: 1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 60
MNQ+KPIFLG RA N+QKCIRAGGKHNDL++VG+ HHTFFEMLGN+S
Sbjct: 38 MNQFKPIFLGGEAK----PPYNRAVNSQKCIRAGGKHNDLENVGRTARHHTFFEMLGNFS 93
Query: 61 FGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPAS 118
FGDYFK EAIE+AWELLTKV L +RLY T + D+ EA IW K +P
Sbjct: 94 FGDYFKEEAIEFAWELLTKVLGLDPERLYVTVYEWDD--------EAGPIWEKIVGIPEE 145
Query: 119 RVLPFGCKDNFWEMGDTGPCGPCSEIHYDRT---GNRDAASLVNNDDPTCIEIWNIVFIQ 175
R+L FG KDNFWEMGDTGPCGPCSEI YDR G + DD +EIWN+VF+Q
Sbjct: 146 RILRFGDKDNFWEMGDTGPCGPCSEIDYDRGEEIGGWPSGGPPTADDDRFLEIWNLVFMQ 205
Query: 176 FNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSG 235
FNRESDG+LKPLP K +DTG+G ERL ++LQN SNYDTD+F+P+ + I++ +GA+ Y+
Sbjct: 206 FNRESDGTLKPLPKKSIDTGMGLERLVAVLQNVRSNYDTDLFIPLIELIEEISGAKYYT- 264
Query: 236 KVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKA 295
D+ D AYRV+ADH R L+FAIADG P NEGR YVLRRILRRAVR+ + L
Sbjct: 265 ------KDETDEAYRVIADHTRALTFAIADGVVPSNEGRGYVLRRILRRAVRHA-KKLGL 317
Query: 296 QDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ 355
++ F LV V++ MGD +PELK++E I+EI+ EE F KTL +G+ ++ + ++
Sbjct: 318 KEPFLYKLVPTVIEEMGDAYPELKEKEDTIQEILELEEERFAKTLERGLRLLERLIKSLK 377
Query: 356 -GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAG 414
K L G+DAF L+DTYGFP+DLTQ +AEERGL VD+ GF AM E RERS+ Q +
Sbjct: 378 KSKTLPGEDAFKLYDTYGFPVDLTQEIAEERGLTVDMPGFEKAMVEQRERSK--QAVKEK 435
Query: 415 GAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVL 474
G +D A L AT + + + ++ A++ EF+ V+ G E G++L
Sbjct: 436 GE-ELDVSALVELP-----ATSEFLGYDDLEAEAKIL-ALFKDGEFVAEVLEGQEGGVIL 488
Query: 475 ASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICK 534
+ FYAE GGQI D G+I G G F V +VQ YGG V+H G L G+ VG+ VI
Sbjct: 489 DRTPFYAESGGQIGDTGYIIGEGGEFRVTDVQKYGGVVVHKGKLESGS--LKVGDTVIAV 546
Query: 535 VDYDR 539
VD DR
Sbjct: 547 VDEDR 551
>gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core
catalytic domain. AlaRS is a homodimer. It is
responsible for the attachment of alanine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. Class II assignment is
based upon its predicted structure and the presence of
three characteristic sequence motifs.
Length = 232
Score = 336 bits (864), Expect = e-109
Identities = 120/208 (57%), Positives = 139/208 (66%), Gaps = 15/208 (7%)
Query: 1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 60
MNQ+KPIFLG P R N+QKCIRAG N VGK HHTFFEMLGN+S
Sbjct: 40 MNQFKPIFLGEVPPPA-----NRLVNSQKCIRAGDIDN----VGKTGRHHTFFEMLGNFS 90
Query: 61 FGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRV 120
FGDYFK EAI +AWELLT+V LP DRLY + F GD++ EA W LP R+
Sbjct: 91 FGDYFKEEAIAFAWELLTEVLGLPKDRLYVSVFEGDDEE------EAIWWWKIGLPGIRI 144
Query: 121 LPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRES 180
G KDNFWEMG GPCGPCSEI YDR RDAASL N DD +EIWN+VF+Q+NR++
Sbjct: 145 ERIGFKDNFWEMGGNGPCGPCSEIFYDRGEERDAASLPNEDDDRYLEIWNLVFMQYNRDA 204
Query: 181 DGSLKPLPAKHVDTGLGFERLTSILQNK 208
DG+ +PLP K VDTG+G ERL +LQ
Sbjct: 205 DGTYRPLPKKIVDTGMGLERLVWVLQGV 232
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional.
Length = 594
Score = 339 bits (871), Expect = e-106
Identities = 170/440 (38%), Positives = 244/440 (55%), Gaps = 36/440 (8%)
Query: 1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 60
M+ P LG P TR + QKC+R G D+D+VG D H TFFEMLGNWS
Sbjct: 42 MHPLVPYLLGEPHP-----SGTRLVDVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWS 91
Query: 61 FGDYFKNEAIEWAWELLT--KVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPA 117
G YFK E+I++++E LT +P D+LY T F GDE+ D E +W +P
Sbjct: 92 LGAYFKEESIKYSFEFLTSPDYLNIPKDKLYVTVFEGDEEI--PRDEETASVWESLGIPK 149
Query: 118 SRVLPFGCKDNFW-EMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTC-----IEIWNI 171
R+ + N+W +G+TGPCGP +EI D TG + S N PTC EIWN
Sbjct: 150 DRIFYLSREHNWWGPVGETGPCGPDTEIFVD-TG-KPKCS--VNCRPTCSCGKYFEIWNN 205
Query: 172 VFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR 231
VF+Q+N++ DG+ + L K VDTG+G ER + LQ K S YDT+ F PI I++ +G
Sbjct: 206 VFMQYNKDEDGNYEELKRKCVDTGMGIERTIAFLQGKSSVYDTEAFTPIIKRIEKISGKI 265
Query: 232 PYSGKVGADDADKVDMAYRVVADHIRTLSFAIAD--GSCPGNEGREYVLRRILRRAVRYG 289
G+ DD R++ADHIR F + D P N G+ YVLRR++RR++R+
Sbjct: 266 --YGQNEEDDRSI-----RIIADHIRAACFILGDPFVVLPSNVGQGYVLRRLIRRSIRHA 318
Query: 290 SEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKK 349
+ L + F LV+ V ++ G +PEL +++ I+E + EE F KTL KG ++F K
Sbjct: 319 KK-LGIESHFLADLVDSVEEIYGSFYPELTEKKDFIKEELNKEEEKFFKTLRKGEQEFIK 377
Query: 350 AAQDV-QGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSA 408
++ K++ G AF L+DTYGFP ++T+ +A E G VD EGF+ + ++ S+
Sbjct: 378 LIPNLGSSKIIPGDIAFKLYDTYGFPYEITEELASEYGFTVDREGFDEHFKKHQKVSKKG 437
Query: 409 QNKQAGGAIVMDADATAALH 428
+K G + + T LH
Sbjct: 438 ADKVFKGGLADHSYETTKLH 457
Score = 136 bits (345), Expect = 1e-33
Identities = 64/152 (42%), Positives = 88/152 (57%), Gaps = 17/152 (11%)
Query: 547 HTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAE 606
HT TH+L+ ALR VLGDHV QKGS + E+LRFDFSH + + + ++++E IVN QIK +
Sbjct: 457 HTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEKMTDDEIKKVEDIVNLQIKND 516
Query: 607 LDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELC 666
L V + +L EA+ G A+FGE Y D V+V I S E+C
Sbjct: 517 LSVKKEVMSLEEAREK-GAMALFGEKYEDIVKVYEID----------------GFSKEVC 559
Query: 667 GGTHLSNTREAEAFALLSEEGIAKGIRRITAV 698
GG H+ NT E F + E+ + G+RRI A+
Sbjct: 560 GGPHVENTGELGTFKIQKEQSSSSGVRRIRAI 591
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional.
Length = 900
Score = 294 bits (755), Expect = 4e-86
Identities = 226/923 (24%), Positives = 383/923 (41%), Gaps = 202/923 (21%)
Query: 28 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSF---GD--YFKNEAIEWAWELLTKVYR 82
Q CIR ND+D+VG+ H T FEM+ + +F Y+K+E +E+ +E TK
Sbjct: 123 QPCIRL----NDIDNVGRTGRHLTSFEMMAHHAFNYPDKEVYWKDETVEYCFEFFTKELG 178
Query: 83 LPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCS 142
+ + + T+ K+++WE G G GPC
Sbjct: 179 IDPEEI--TF---------------------------------KESWWEGG--GNAGPCF 201
Query: 143 EIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLT 202
E+ G +E+ +VF+Q+ ++ +P K VDTG G ER+
Sbjct: 202 EVLVR--G---------------LELATLVFMQY-KKDGNRYVEMPLKIVDTGYGLERIA 243
Query: 203 SILQNKMSNYDTDVFMPIFDAIQQATGARP-----------YSGKVGADDADKVDMAYRV 251
Q + YD +F + D +++ G +G + ++ + + +
Sbjct: 244 WASQGTPTAYDA-IFGELVDKLKENAGVEEPDEEILAEAARLAGLMDIEEIEDLRSLRQK 302
Query: 252 VA------------------------DHIRTLSFAIADGSCPGNEGREYVLRRILRRAVR 287
VA DH RTL+F + DG P N G Y+ R ++RR +R
Sbjct: 303 VAKKLGIDVEELEELLEPLEAIYAIADHTRTLAFMLGDGIVPSNVGEGYLARLVIRRTLR 362
Query: 288 YGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKF 347
E L D + LV++ + + + +PELK+ +I +I+ EE + +TL +G
Sbjct: 363 LLDE-LGL-DVPLSELVDMQIDELKEDYPELKENRDYILDIVDLEEEKYRETLERGKRIV 420
Query: 348 KKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDI-EGFNNAMDEARERSR 406
++ A+ + + D L+D++G P ++ + +A+++G+ V++ + F
Sbjct: 421 ERLAKKK--EEIPLDDLIELYDSHGIPPEIVKEIAKKKGVEVEVPDNFY----------- 467
Query: 407 SAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI-WFQDHKSVIKAIY---TGSEFIE 462
++V A H++ ++ +D K Y EF E
Sbjct: 468 ---------SLV------AERHEKAEEEEEEPVVEEERLKDLPETEKLFYEDPYMREF-E 511
Query: 463 SVVPG-NEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEG 521
+ V G + +VL ++FY E GGQ D G + + V +VQ GG ++H+ EG
Sbjct: 512 AKVLGVIDNYVVLDQTAFYPEGGGQPADTGVLIVDGKGYKVVDVQKVGGVIVHV---LEG 568
Query: 522 AGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDF 581
G+EV ++D++RR + +HT TH++ A R+VLGDHV Q G+ +K R D
Sbjct: 569 EPPK-KGDEVRGEIDWERRYRLMRHHTATHIILAAARKVLGDHVWQAGAQKTVDKARLDI 627
Query: 582 SHGKPVDPEHLRRIESIVNEQIKAELDVFSK--EATLAEAKCINGLRAVFGEVYPDPV-R 638
+H K + E ++ IE + NE + V + + AE K G R G V P R
Sbjct: 628 THYKRITREEVKEIERLANEIVMENRPVKVEWMDRNEAEQK--YGFRLYQGGVPPGKTIR 685
Query: 639 VVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAV 698
VV IG E CGGTH+SNT E +L E I G+ R+
Sbjct: 686 VVEIG----------------DWDVEACGGTHVSNTGEIGPIKILKTERIQDGVERLE-F 728
Query: 699 TTGLAYKAFEAACSLEKEVDDASKIEGSL---LEKTVASLKSKVDGAAIPAPKKADIRAK 755
G A A E LE + +A++I G L KTV + K+
Sbjct: 729 AAGDA--AVEYIQELEDLLKEAAEILGVPPEQLPKTVERFFEEW--------KE------ 772
Query: 756 IALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVL 815
+ ++ K +K++AE + + ++A G + V+ D +R+
Sbjct: 773 ---QKKEIEKLRKELAE------LLASELLSKAEEVGGVKVVVEEVDA--DEDELRKIAN 821
Query: 816 KVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKG 875
++ ++ + ++V + GV E + E + + L G+ G GK
Sbjct: 822 ELAKEGKVALVVLGNG----GGQIVVGVGEDVG----VNAGEIVRELAKVLGGK-GGGKP 872
Query: 876 GLASGQGTDAAQVTPAMDLAAEF 898
LA G G D + A++ A E
Sbjct: 873 DLAQGGGPDPKKKEEALEAAKEV 895
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase. This family of
alanyl-tRNA synthetases is limited to the archaea, and
is a subset of those sequences identified by the model
pfam07973 covering the second additional domain (SAD) of
alanyl and threonyl tRNA synthetases.
Length = 902
Score = 283 bits (727), Expect = 3e-82
Identities = 232/923 (25%), Positives = 370/923 (40%), Gaps = 194/923 (21%)
Query: 28 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD-----YFKNEAIEWAWELLTKVYR 82
Q CIR ND+D+VG+ H T FEM+ + +F Y+K+E +E+ +E L
Sbjct: 120 QPCIRL----NDIDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFLE---E 172
Query: 83 LPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCS 142
L D TY K++ WE G G GPC
Sbjct: 173 LGIDPEEITY---------------------------------KESPWEGG--GNAGPCF 197
Query: 143 EIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSL-------KPLPAKHVDTG 195
E+ G +E+ +VF+Q+ + +G + +P K VDTG
Sbjct: 198 EVIVG--G---------------LELATLVFMQYEEDKEGEIEIKGGRYSEMPLKIVDTG 240
Query: 196 LGFERLTSILQNKMSNYDTDVFMPIFDAIQQATG------------ARPYSGKVGADD-- 241
G ER Q + YD +F I D +++ G AR +G + +D
Sbjct: 241 YGLERFVWASQGTPTAYDA-IFPEIVDKLKENAGVELIDEEILAENAR-LAGMMDIEDEE 298
Query: 242 ---------ADKVDMAYR-------------VVADHIRTLSFAIADGSCPGNEGREYVLR 279
ADK+ + +ADH R L+F + DG P N Y+ R
Sbjct: 299 DLRELRKKVADKIGIDVEELEKIIAPVERIYAIADHTRCLAFMLGDGIVPSNVKEGYLAR 358
Query: 280 RILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKT 339
++RR +R L D + LV + ++ + ++PELK+ + +I +I+ EE + +T
Sbjct: 359 LVIRRTLRL-MRELGL-DIPLSDLVEMQLEELKKIYPELKENKDYILDILDLEEEKYRET 416
Query: 340 LLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDI-EGFNNAM 398
L +G ++ + K + D L+D++G P ++ + +A E G V+I + F
Sbjct: 417 LERGRRIVERLLK--TKKEIPLDDLIELYDSHGIPPEIVKEIAAELGAEVEIPDNF---- 470
Query: 399 DEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGS 458
+ R + ++ + L + L +D
Sbjct: 471 -YSIVAERHEKEEKEEELPKDYEERAKDLPETRRLFYEDPTM-----------------R 512
Query: 459 EFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSL 518
EF V+ + +VL ++FY E GGQ D G++ G + V +VQ GG ++H
Sbjct: 513 EFEAKVLGVFDNYVVLDQTAFYPEGGGQPADTGYLITNGGEYRVVDVQKVGGVIVHK--- 569
Query: 519 TEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLR 578
+G G G+EV ++D++RR + +HT TH+L A R VLG HV Q G+ +K R
Sbjct: 570 VDGEG-IKEGDEVKGEIDWERRLRLMRHHTATHVLLAAARRVLGRHVWQAGAQKDTDKAR 628
Query: 579 FDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSK--EATLAEAKCINGLRAVFGEVYP-D 635
D +H K + E ++ IE + N + V K + AE K G R G V P
Sbjct: 629 LDITHYKRISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQK--YGFRLYQGGVPPGR 686
Query: 636 PVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRI 695
+RVV I + CGGTH NT E +L E I G+ RI
Sbjct: 687 EIRVVEIE----------------DWDVQACGGTHCRNTGEIGPIKILKTERIQDGVERI 730
Query: 696 TAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAK 755
G A A E LE + ++S I KV +P K
Sbjct: 731 E-FAAGEA--ALEYIQELEDLLRESSDI-------------LKVPPEQLPETVKRFFEEW 774
Query: 756 IALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVL 815
+ ++ + +KK+AE K+ +EA G + V+ D ++E
Sbjct: 775 KE-QRKEIERLKKKLAEL------KIYELISEAERIGGVEVIVELVDA--DMDELQEIAE 825
Query: 816 KVIEQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKG 875
K+ E+ + V+V S + V+ +G + ++ E + + L G G GK
Sbjct: 826 KLAEKGLVVVLV-SGGGGNGRVVISSG------EKAGVDAGELVREIAKELGGG-GGGKP 877
Query: 876 GLASGQGTDAAQVTPAMDLAAEF 898
LA G G D V A++ F
Sbjct: 878 DLAQGGGPDDLNVDEALEKIKSF 900
>gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to
alanyl-tRNA synthetase HxxxH domain [General function
prediction only].
Length = 241
Score = 111 bits (280), Expect = 2e-27
Identities = 68/242 (28%), Positives = 104/242 (42%), Gaps = 26/242 (10%)
Query: 458 SEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGS 517
EF +VV + IVL + FY GGQ D G + G + V +V G ++H+ +
Sbjct: 13 KEFEATVVDVEDNEIVLDRTIFYPTGGGQPGDTGTLIWAGGEYVVEDVTKDGEEIVHVLA 72
Query: 518 LTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKL 577
VG++V K+D++RR HT H+L+ L +V G G + +
Sbjct: 73 EHAK---LKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYG--ALTTGFEIGEDYA 127
Query: 578 RFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDP- 636
R DF + + +E++ NE +K L V EA+ + GL + +V PD
Sbjct: 128 RIDFD--GEDTEDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVE 185
Query: 637 --VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRR 694
+R+V IG + CGGTH+ NT E +L E KG RR
Sbjct: 186 GKIRIVEIG-------------DIDVQP---CGGTHVKNTGEIGEIKILKTEKKGKGNRR 229
Query: 695 IT 696
+
Sbjct: 230 VY 231
>gnl|CDD|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second
additional domain. The catalytically active form of
threonyl/alanyl tRNA synthetase is a dimer. Within the
tRNA synthetase class II dimer, the bound tRNA interacts
with both monomers making specific interactions with the
catalytic domain, the C-terminal domain, and this SAD
domain (the second additional domain). The second
additional domain is comprised of a pair of
perpendicularly orientated antiparallel beta sheets, of
four and three strands, respectively, that surround a
central alpha helix that forms the core of the domain.
Length = 43
Score = 62.8 bits (154), Expect = 1e-12
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 16/59 (27%)
Query: 637 VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRI 695
VRVV+IG S ELCGGTH+ NT E AF +LS G G++RI
Sbjct: 1 VRVVSIG----------------DFSVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRI 43
>gnl|CDD|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second
additional domain. The catalytically active from of
threonyl/alanyl tRNA synthetase is a dimer. Within the
tRNA synthetase class II dimer, the bound tRNA interacts
with both monomers making specific interactions with the
catalytic domain, the C-terminal domain, and this domain
(the second additional domain). The second additional
domain is comprised of a pair of perpendicularly
orientated antiparallel beta sheets, of four and three
strands, respectively, that surround a central alpha
helix that forms the core of the domain.
Length = 44
Score = 62.1 bits (152), Expect = 2e-12
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 16/59 (27%)
Query: 637 VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRI 695
VRVV IG +LCGGTH+ NT E AF +L + KG++RI
Sbjct: 1 VRVVRIG----------------DFDVDLCGGTHVPNTGEIGAFKILKGDSKNKGLQRI 43
>gnl|CDD|178546 PLN02961, PLN02961, alanine-tRNA ligase.
Length = 223
Score = 67.0 bits (164), Expect = 2e-12
Identities = 61/215 (28%), Positives = 84/215 (39%), Gaps = 28/215 (13%)
Query: 472 IVLASSSFYAEQGGQIFDEGFIEGLFGS--FYVRNVQIYGGFVIHIG----SLTEGAGRF 525
+VL + F+ + GGQ D G I G F V++V+ G V H G S E A F
Sbjct: 5 LVLDRTIFHPQGGGQPSDTGRIVISGGDTKFSVQDVRRKDGVVYHYGVFEGSNPESASPF 64
Query: 526 SVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREV-LGDHVDQKGSVVLPEKLRFDFSHG 584
G+EV VD RRKL + H+ H+L+ + V LG KG + F G
Sbjct: 65 EAGDEVTVTVDESRRKLHSRLHSAGHLLDVCMARVGLGPLEPGKG---------YHFPDG 115
Query: 585 KPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGR 644
V E+ +I ELD E + I V V P G
Sbjct: 116 PFV--EYKGKIPQ-------GELDSKQDELEAEANELIAEGGKVSAAVLPYDEAAELCGG 166
Query: 645 KVEDLLADPENKEWLSISAEL---CGGTHLSNTRE 676
+ D +A + I CGGTH+++ E
Sbjct: 167 SLPDYIAKDSTPRIVKIGDSPGCPCGGTHVADVSE 201
>gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.
Length = 638
Score = 47.4 bits (114), Expect = 3e-05
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 26/114 (22%)
Query: 579 FDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF---GEVYPD 635
+DF +P PE L IE + E IK + + + EA +F GE Y
Sbjct: 104 YDFDRERPFTPEDLEAIEKEMKEIIKENYPIEREVVSREEA------IELFKDRGEPY-- 155
Query: 636 PVRVVAIGRKVEDLLADPENKEWLSIS-----AELCGGTHLSNTREAEAFALLS 684
KVE L+ + E +S+ +LC G H+ +T + +AF LL
Sbjct: 156 ---------KVE-LIEEIPEDEEISLYRQGEFVDLCRGPHVPSTGKIKAFKLLK 199
>gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.
Length = 575
Score = 44.4 bits (106), Expect = 2e-04
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 34/149 (22%)
Query: 546 NHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRF----------DFSHGKPVDPEHLRRI 595
H+ H+L A++E+ D KL DF +P PE L++I
Sbjct: 10 RHSAAHVLAQAVQELFPD-----------AKLGIGPPIEDGFYYDFDVPEPFTPEDLKKI 58
Query: 596 ESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPEN 655
E + + IK L +E + EA R F +P ++ I E+ + +N
Sbjct: 59 EKKMKKIIKRGLPFEREEVSREEA------REEFAN---EPYKLELIDDIPEEGITIYDN 109
Query: 656 KEWLSISAELCGGTHLSNTREAEAFALLS 684
++ +LC G H+ NT+ +AF L S
Sbjct: 110 GDF----EDLCRGPHVPNTKFIKAFKLTS 134
>gnl|CDD|216955 pfam02272, DHHA1, DHHA1 domain. This domain is often found
adjacent to the DHH domain pfam01368 and is called DHHA1
for DHH associated domain. This domain is diagnostic of
DHH subfamily 1 members. This domains is also found in
alanyl tRNA synthetase , suggesting that this domain may
have an RNA binding function. The domain is about 60
residues long and contains a conserved GG motif.
Length = 69
Score = 35.3 bits (82), Expect = 0.010
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 824 PVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGT 883
PV++F+ ++ K V A + D E L + L G G G A G
Sbjct: 3 PVVLFAEED--GKVKVSARSSKGLDVK----GGELLKEVAEKLGGGGG-GHPDAAGAGGK 55
Query: 884 DAAQVTPAMDLAAE 897
D +++ A++L E
Sbjct: 56 DPSKLEEALELLKE 69
>gnl|CDD|232967 TIGR00418, thrS, threonyl-tRNA synthetase. This model represents
the threonyl-tRNA synthetase found in most organisms.
This protein is a class II tRNA synthetase, and is
recognized by the pfam model tRNA-synt_2b. Note that B.
subtilis has closely related isozymes thrS and thrZ. The
N-terminal regions are quite dissimilar between archaeal
and eubacterial forms, while some eukaryotic forms are
missing sequence there altogether. [Protein synthesis,
tRNA aminoacylation].
Length = 563
Score = 39.2 bits (92), Expect = 0.010
Identities = 36/148 (24%), Positives = 52/148 (35%), Gaps = 25/148 (16%)
Query: 547 HTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAE 606
H+ H+L AL+++ D G VV +DF + E L +IE + E K
Sbjct: 2 HSIAHLLAEALKQLYPDVKLAIGPVVEDG-FYYDFELDRSFTQEDLEKIEKDMKEIAKKN 60
Query: 607 LDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVE-DLLADPENKE------WL 659
V +L EA + + +LL + N W
Sbjct: 61 YPVAKLSVSLEEALEA-----------------FKVLEPYKLELLDEIPNGVKRTPYGWG 103
Query: 660 SISAELCGGTHLSNTREAEAFALLSEEG 687
+LC G HL NT +AF L G
Sbjct: 104 KAFVDLCKGPHLPNTSFIKAFKLEKVAG 131
>gnl|CDD|223518 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 589
Score = 38.4 bits (90), Expect = 0.019
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 27/174 (15%)
Query: 523 GRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFS 582
G + +E+I D + ++I H+C H+L A++ + + D V+ E +DF
Sbjct: 9 GELDLKDEIITAEDEEGLEII--RHSCAHVLAQAVKRL---YPDVTIGPVIEEGFYYDFD 63
Query: 583 HGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAI 642
+P+ PE L +IE + E K L + + + EA RA FG P + I
Sbjct: 64 VKEPITPEDLLKIEKEMKEIAKENLPIEREVVSREEA------RAPFG-----PYKAELI 112
Query: 643 GRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLS-----EEGIAKG 691
K L++ E+ +LC G H+ +T + AF LL G
Sbjct: 113 DCKGHP-LSEYSQGEF----VDLCRGPHVPSTGK-IAFKLLKLAGAYWRGDENN 160
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 36.8 bits (86), Expect = 0.058
Identities = 43/232 (18%), Positives = 73/232 (31%), Gaps = 30/232 (12%)
Query: 675 REAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVAS 734
+ AEA A ++ +A + R+ A A + + E +
Sbjct: 475 KAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARAR- 533
Query: 735 LKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGK 794
+++ AA PKKA + A IA R KK A++ + + +AA
Sbjct: 534 -QAEKQAAAAADPKKAAVAAAIA------RAKAKKAAQQAANAEAEEEVDPKKAAV---- 582
Query: 795 PFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTN--KAVVCAGVPEKSDQSKQ 852
AAA+ A K Q+ + KA V A + + +
Sbjct: 583 ------------AAAIARAKAKKAAQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKAE 630
Query: 853 LEVSEWLTAALQPLKGRC----GKGKGGLASGQGTDAAQVTPAMDLAAEFAA 900
+ + + P K + K A+ Q +A A AA
Sbjct: 631 QQANAEPEEPVDPRKAAVAAAIARAKARKAAQQQANAEPEEAEDPKKAAVAA 682
>gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed.
Length = 639
Score = 35.9 bits (83), Expect = 0.11
Identities = 45/152 (29%), Positives = 65/152 (42%), Gaps = 33/152 (21%)
Query: 547 HTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIE----SIVNEQ 602
H+ H+L A++ + GD G V+ +D V+ E LR+IE I+NE
Sbjct: 77 HSAAHILAQAVKRLYGDVNLGVGPVIENG-FYYDMDLPSSVNVEDLRKIEKEMKKIINEN 135
Query: 603 IKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSIS 662
IK E S+E EA +F E+ D + K+E L A P + SI+
Sbjct: 136 IKIERVEVSRE----EAA------KLFQEMN-DRL-------KLELLEAIPSGE---SIT 174
Query: 663 -------AELCGGTHLSNTREAEAFALLSEEG 687
+LC G HL +T +AF L G
Sbjct: 175 LYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSG 206
>gnl|CDD|238652 cd01342, Translation_Factor_II_like, Translation_Factor_II_like:
Elongation factor Tu (EF-Tu) domain II-like proteins.
Elongation factor Tu consists of three structural
domains, this family represents the second domain.
Domain II adopts a beta barrel structure and is involved
in binding to charged tRNA. Domain II is found in other
proteins such as elongation factor G and translation
initiation factor IF-2. This group also includes the C2
subdomain of domain IV of IF-2 that has the same fold as
domain II of (EF-Tu). Like IF-2 from certain prokaryotes
such as Thermus thermophilus, mitochondrial IF-2 lacks
domain II, which is thought to be involved in binding
of E.coli IF-2 to 30S subunits.
Length = 83
Score = 32.7 bits (75), Expect = 0.12
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 430 RGVLATDDSFKFIWFQD-HKSVIKAIYTGSEFIESVVPGNEVGIVLA 475
G L D + K +K++ ++ V G+ VGIVL
Sbjct: 24 SGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLK 70
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl
synthetase-like catalytic core domain. Class II amino
acyl-tRNA synthetases (aaRS) share a common fold and
generally attach an amino acid to the 3' OH of ribose of
the appropriate tRNA. PheRS is an exception in that it
attaches the amino acid at the 2'-OH group, like class I
aaRSs. These enzymes are usually homodimers. This domain
is primarily responsible for ATP-dependent formation of
the enzyme bound aminoacyl-adenylate. The substrate
specificity of this reaction is further determined by
additional domains. Intererestingly, this domain is also
found is asparagine synthase A (AsnA), in the accessory
subunit of mitochondrial polymerase gamma and in the
bacterial ATP phosphoribosyltransferase regulatory
subunit HisZ.
Length = 211
Score = 34.4 bits (79), Expect = 0.16
Identities = 15/72 (20%), Positives = 19/72 (26%), Gaps = 13/72 (18%)
Query: 28 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYF-----KNEAIEWAWELLTKV-Y 81
R G L F L FG+ E IE ELL +
Sbjct: 82 GPAFRNEGGRRGLR-------RVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGI 134
Query: 82 RLPADRLYATYF 93
+L + T
Sbjct: 135 KLDIVFVEKTPG 146
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 33.2 bits (76), Expect = 0.77
Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 713 LEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQ--NQVRKAQKKV 770
E+ A + L E+ + +L++++D ++ A A AL Q + R A++ +
Sbjct: 247 ARAELRAARRNLELLTER-LEALQAELDEISLDEELLAQAAAIEALHQQRGEYRNAEQDL 305
Query: 771 AEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQKG 822
+ + A A A G VE + A +E V ++ ++K
Sbjct: 306 PDREGEIANA-REAAAALLAQIGPDADEEAVESLRPSLAAKETVTELEKRKE 356
>gnl|CDD|153347 cd07663, BAR_SNX5, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting
Nexin 5. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions. Sorting nexins (SNXs)
are Phox homology (PX) domain containing proteins that
are involved in regulating membrane traffic and protein
sorting in the endosomal system. SNXs differ from each
other in their lipid-binding specificity, subcellular
localization and specific function in the endocytic
pathway. A subset of SNXs also contain BAR domains. The
PX-BAR structural unit determines the specific membrane
targeting of SNXs. SNX5, abundantly expressed in
macrophages, regulates macropinocytosis, a process that
enables cells to internalize large amounts of external
solutes. It may also be a component of the retromer
complex, a membrane coat multimeric complex required for
endosomal retrieval of lysosomal hydrolase receptors to
the Golgi, acting as a mammalian equivalent of yeast
Vsp17p. It also binds the Fanconi anaemia
complementation group A protein (FANCA). SNX5 is
localized to a subdomain of early endosome and is
recruited to the plasma membrane following EGF
stimulation and elevation of PI(3,4)P2 levels. BAR
domains form dimers that bind to membranes, induce
membrane bending and curvature, and may also be involved
in protein-protein interactions.
Length = 218
Score = 32.2 bits (73), Expect = 0.82
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 329 IAAEEAS-FGKTLLKGIEKFKKAAQDVQGKVLSGQDAFI--LWDTYGFPLDLTQ-LMAEE 384
+AAEE + K LLK E F+K + V+ +V S QD + L Y ++ + L+
Sbjct: 70 VAAEEPTVIKKYLLKVAELFEKL-RKVEDRVASDQDLKLTELLRYYMLNIEAAKDLLYRR 128
Query: 385 RGLLVDIEGFNNAMDEARERSRSAQNKQA 413
L D E N A+D+AR +S+ + +A
Sbjct: 129 ARALADYENSNKALDKARLKSKDVKQAEA 157
>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase,
eukaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known eukaryotic examples of the enzyme.
The degree of sequence difference between this set and
known bacterial examples is greater than the distance
between either set the most similar enzyme with distinct
function, and so separate models are built for
prokaryotic and eukaryotic sets. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 464
Score = 32.5 bits (74), Expect = 1.0
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 311 MGDVFPELKQREAHIREIIAAEE-----ASFGKTLLKGIEKF-KKAAQDVQGKVLSGQDA 364
MGD L RE I + I ++ A G L G+E KK + +Q G+
Sbjct: 349 MGDPSRALILRE--IIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGT 406
Query: 365 FILWDT 370
FI WDT
Sbjct: 407 FIAWDT 412
>gnl|CDD|222647 pfam14282, FlxA, FlxA-like protein. This family includes FlxA from
E. coli. The expression of FlxA is regulated by the FliA
sigma factor, a transcription factor specific for class
3 flagellar operons. However FlxA is not required for
flagellar function or formation.
Length = 106
Score = 30.5 bits (69), Expect = 1.1
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 728 LEKTVASLKSKVDGAAIPAPKKAD-IRAKIALLQNQVRKAQKKVAEENLQKAVKVATETA 786
L K + L S D A K+ I+ +I +LQ Q+ + Q++ +EE Q+ ++
Sbjct: 31 LTKQLKELSSSEDLTAEEKQKQQQLIQQQIQMLQAQIAQLQQQQSEEAQQQQQSSIEDSP 90
Query: 787 EAAASNGK 794
++ G
Sbjct: 91 SQTSAEGV 98
>gnl|CDD|218434 pfam05103, DivIVA, DivIVA protein. The Bacillus subtilis divIVA1
mutation causes misplacement of the septum during cell
division, resulting in the formation of small, circular,
anucleate mini-cells. Inactivation of divIVA produces a
mini-cell phenotype, whereas overproduction of DivIVA
results in a filamentation phenotype. These proteins
appear to contain coiled-coils.
Length = 131
Score = 30.3 bits (69), Expect = 1.8
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 748 KKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAE 787
+ +++ +I L+ ++ + K EE LQK + VA ETAE
Sbjct: 40 ENEELKEEIERLEEKL--EEYKELEETLQKTLVVAQETAE 77
>gnl|CDD|182809 PRK10884, PRK10884, SH3 domain-containing protein; Provisional.
Length = 206
Score = 30.8 bits (70), Expect = 2.6
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 713 LEKEV----DDASKIEGSLLEKTVASLKSKVDGA--AIPAPKKADIRAKIALLQNQVRKA 766
LE +V D + I+ + ++T A ++ KV + I ++ + L+NQ+ A
Sbjct: 98 LENQVKTLTDKLNNIDNTWNQRT-AEMQQKVAQSDSVI-----NGLKEENQKLKNQLIVA 151
Query: 767 QKKVAEENLQ 776
QKKV NLQ
Sbjct: 152 QKKVDAANLQ 161
>gnl|CDD|178237 PLN02630, PLN02630, pfkB-type carbohydrate kinase family protein.
Length = 335
Score = 30.9 bits (70), Expect = 2.6
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 236 KVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKA 295
KVG D +V V+ D T A D GN + VL+R+ S++
Sbjct: 59 KVGPDFLYQVSHPPIVIPDSKTTEFHADFDQGIDGNGHEDRVLKRVCACDPIEPSDIPDM 118
Query: 296 QDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAE 332
+ F G+ V V G++ PE +R I +++ +
Sbjct: 119 RYEF--GM---AVGVAGEILPETLERMVEICDVVVVD 150
>gnl|CDD|221084 pfam11336, DUF3138, Protein of unknown function (DUF3138). This
family of proteins with unknown function appear to be
restricted to Proteobacteria.
Length = 514
Score = 31.4 bits (71), Expect = 2.6
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 741 GAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISR 800
GAA A + I+A LQ Q+ Q++V E L+ A+ A A +
Sbjct: 16 GAAAAASDASQIKA----LQAQLTALQQQVNE--LRAALAAKPAAAGGGAKIQSAAAAAA 69
Query: 801 VEVGLDAAAV 810
DAAA
Sbjct: 70 AAPSSDAAAA 79
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 31.0 bits (70), Expect = 2.8
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 3/130 (2%)
Query: 686 EGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIP 745
+ + + I R+ A K + + AS S +K +K +A
Sbjct: 181 DEVTREIGRVLAAVGAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKK 240
Query: 746 APKKADIRAKIAL--LQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEV 803
A K A AK A + ++KA K V + +KA K A + A+ AA K ++ +
Sbjct: 241 AAKTAAKAAKKAKKTAKKALKKAAKAVKKAA-KKAAKAAAKAAKGAAKATKGKAKAKKKA 299
Query: 804 GLDAAAVREA 813
G AAA +A
Sbjct: 300 GKKAAAGSKA 309
>gnl|CDD|235754 PRK06253, PRK06253, O-phosphoseryl-tRNA synthetase; Reviewed.
Length = 529
Score = 31.1 bits (71), Expect = 3.1
Identities = 35/140 (25%), Positives = 48/140 (34%), Gaps = 44/140 (31%)
Query: 627 AVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEE 686
A EVY V G ++L P+ KE L E EE
Sbjct: 423 AALNEVY------VYDG----NILGIPDTKEKL-----------------KEVK----EE 451
Query: 687 GIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSL----------LEKTVASLK 736
G++ GIR I A A K EAA S E E +I S + +
Sbjct: 452 GVSTGIRYIDAFAAKAAAKIEEAAVSGEGEFKVRVRIVRSPSDINLKIDELALRYITGKN 511
Query: 737 SKVDGAAIPAPKKADIRAKI 756
K+D + P ++A+I
Sbjct: 512 KKID---VRGPVFLTVKAEI 528
>gnl|CDD|129562 TIGR00470, sepS, O-phosphoserine--tRNA ligase. This family of
archaeal proteins resembles known phenylalanyl-tRNA
synthetase alpha chains. Recently, it was shown to act
in a proposed pathway of tRNA(Cys) indirect
aminoacylation, resulting in Cys biosynthesis from
O-phosphoserine, in certain archaea. It charges
tRNA(Cys) with O-phosphoserine. The pscS gene product
converts the phosphoserine to Cys [Amino acid
biosynthesis, Serine family, Protein synthesis, tRNA
aminoacylation].
Length = 533
Score = 31.0 bits (70), Expect = 3.2
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 685 EEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSL 727
EEG++ GIR I + A K EA S +EV I SL
Sbjct: 454 EEGVSTGIRYIDGIAYKAAAKIEEALVSNVEEVKVRVPIVRSL 496
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 30.7 bits (69), Expect = 3.6
Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 14/132 (10%)
Query: 674 TREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDD-----------ASK 722
+ EA EE + + + A + L + E +L K D A+K
Sbjct: 9 DLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRRAAAAAK 68
Query: 723 IEGSLLEKTVASLKSKVDGAAIPAPKK---ADIRAKIALLQNQVRKAQKKVAEENLQKAV 779
+ + L K +V K A +AK A L Q R+ ++V EE A
Sbjct: 69 AKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAK 128
Query: 780 KVATETAEAAAS 791
A A+A A+
Sbjct: 129 AKAAAAAKAKAA 140
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 30.5 bits (69), Expect = 3.8
Identities = 18/77 (23%), Positives = 34/77 (44%)
Query: 714 EKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEE 773
+K+ ++A+ + + + + AA A +A +A+ + +A+KK E
Sbjct: 131 QKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAE 190
Query: 774 NLQKAVKVATETAEAAA 790
KA A + AEA A
Sbjct: 191 AAAKAAAEAKKKAEAEA 207
>gnl|CDD|237552 PRK13903, murB, UDP-N-acetylenolpyruvoylglucosamine reductase;
Provisional.
Length = 363
Score = 29.9 bits (68), Expect = 5.7
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 801 VEVG--LDAAAVREAVLKVIEQKGM 823
VE G + AAVREAVL + KGM
Sbjct: 213 VEPGERVPPAAVREAVLALRAGKGM 237
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat
lipoprotein. This protein family occurs in strictly
within a subset of Gram-negative bacterial species with
the proposed PEP-CTERM/exosortase system, analogous to
the LPXTG/sortase system common in Gram-positive
bacteria. This protein occurs in a species if and only
if a transmembrane histidine kinase (TIGR02916) and a
DNA-binding response regulator (TIGR02915) also occur.
The present of tetratricopeptide repeats (TPR) suggests
protein-protein interaction, possibly for the regulation
of PEP-CTERM protein expression, since many PEP-CTERM
proteins in these genomes are preceded by a proposed DNA
binding site for the response regulator.
Length = 899
Score = 30.4 bits (69), Expect = 5.8
Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 16/108 (14%)
Query: 692 IRRITAVT---TGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSK-----VDGAA 743
RR+ A G +A D L E +A + + A
Sbjct: 331 ARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKAT 390
Query: 744 IPAPKKADIRAKIA---LLQNQVRKAQKKVAEENLQKAVKVATETAEA 788
P+ A R ++ L Q +A +L+ A ++ E A
Sbjct: 391 ELDPENAAARTQLGISKLSQGDPSEA-----IADLETAAQLDPELGRA 433
>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H);
Provisional.
Length = 186
Score = 29.4 bits (66), Expect = 6.5
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 619 AKC--INGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCG 667
AKC ++ VFG V D + VV RK+E++ P N+ L+ CG
Sbjct: 137 AKCDWLDNKHVVFGRVLGDGLLVV---RKIENVATGPNNRPKLACVISECG 184
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 30.0 bits (68), Expect = 7.5
Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 15/96 (15%)
Query: 320 QREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQ 379
+++A I E + A E+ + L G +F + +++ ++ + LD
Sbjct: 413 RQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGRLK----------QRLDSAT 462
Query: 380 LMAEERGLLVDIEGFNNAMDEARE--RSRSAQNKQA 413
EE L +E + A+++A+E A +Q
Sbjct: 463 ATPEE---LEQLEINDEALEKAQEEQEQAEANVEQL 495
>gnl|CDD|189476 pfam00261, Tropomyosin, Tropomyosin.
Length = 237
Score = 29.1 bits (66), Expect = 8.9
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 754 AKIALLQNQVRKAQKKV--AEENLQKAVKVATET-AEAAASNGKPFCISRVEVGLDAAAV 810
KI L+ ++ KA++++ A+E L++A K A + AE A+ N + I +E L+ +
Sbjct: 1 KKIKQLEEELDKAEERLEEAQEKLEEAEKRAEKAEAEVASLNRR---IQLLEEDLERSEE 57
Query: 811 R--EAVLKVIE 819
R A+ K+ E
Sbjct: 58 RLATALEKLEE 68
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 29.2 bits (66), Expect = 9.1
Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 712 SLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVA 771
L E++ +E + + SL K+ + R ++ LQ ++++ +
Sbjct: 196 QLADELNLCDPLELEKARQELRSLSVKIS----------EKRKQLEELQQELQELTIAIE 245
Query: 772 EENLQKAVKVATETAEA 788
+K+ ++ E AEA
Sbjct: 246 ALTNKKS-ELLEEIAEA 261
>gnl|CDD|218791 pfam05879, RHD3, Root hair defective 3 GTP-binding protein (RHD3).
This family consists of several eukaryotic root hair
defective 3 like GTP-binding proteins. It has been
speculated that the RHD3 protein is a member of a novel
class of GTP-binding proteins that is widespread in
eukaryotes and required for regulated cell enlargement.
The family also contains the homologous yeast synthetic
enhancement of YOP1 (SEY1) protein which is involved in
membrane trafficking.
Length = 743
Score = 29.7 bits (67), Expect = 9.4
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 165 CIEIWNIVFIQF------NRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDT 214
C EI N VF +F E LK + GLG +L SI + +S YDT
Sbjct: 256 CDEIANEVFEEFITAYDPLEEKWRELKEAGEGGLLGGLG-AKLASIREKCLSEYDT 310
>gnl|CDD|133452 cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-binding domain of
glutamyl-tRNA reductase. Glutamyl-tRNA reductase
catalyzes the conversion of glutamyl-tRNA to
glutamate-1-semialdehyde, initiating the synthesis of
tetrapyrrole. Whereas tRNAs are generally associated
with peptide bond formation in protein translation, here
the tRNA activates glutamate in the initiation of
tetrapyrrole biosynthesis in archaea, plants and many
bacteria. In the first step, activated glutamate is
reduced to glutamate-1-semi-aldehyde via the NADPH
dependent glutamyl-tRNA reductase. Glutamyl-tRNA
reductase forms a V-shaped dimer. Each monomer has 3
domains: an N-terminal catalytic domain, a classic
nucleotide binding domain, and a C-terminal dimerization
domain. Although the representative structure 1GPJ lacks
a bound NADPH, a theoretical binding pocket has been
described. (PMID 11172694). Amino acid dehydrogenase
(DH)-like NAD(P)-binding domains are members of the
Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 311
Score = 29.2 bits (66), Expect = 9.8
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 24/79 (30%)
Query: 762 QVRKAQKKVAEENL---------QKAVKVA----TETAEAAASNGKPFCISRVEVGLDAA 808
QV+ A K E QKA+KV TET ISR V + +A
Sbjct: 116 QVKNAYKLAKEAGTSGKLLNRLFQKAIKVGKRVRTETG-----------ISRGAVSISSA 164
Query: 809 AVREAVLKVIEQKGMPVMV 827
AV A KG V+V
Sbjct: 165 AVELAEKIFGNLKGKKVLV 183
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.395
Gapped
Lambda K H
0.267 0.0906 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 46,819,573
Number of extensions: 4775024
Number of successful extensions: 5111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4975
Number of HSP's successfully gapped: 83
Length of query: 904
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 798
Effective length of database: 6,236,078
Effective search space: 4976390244
Effective search space used: 4976390244
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.1 bits)