RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 002583
(904 letters)
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Length = 739
Score = 657 bits (1696), Expect = 0.0
Identities = 156/737 (21%), Positives = 265/737 (35%), Gaps = 139/737 (18%)
Query: 1 MNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNW 59
+ ++P G A P +Q CIR +DLD VG+ H T FEM+ +
Sbjct: 101 IADFQPFVTSGVAPP-----PANPLTISQPCIRL----DDLDSVGRTGRHLTLFEMMAHH 151
Query: 60 SFGD-----YFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF 114
+F Y+KNE + + ELL ++ + + +
Sbjct: 152 AFNYPGKEIYWKNETVAYCTELLNELG-VKKEDIVY------------------------ 186
Query: 115 LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTG---------NRDAASLVNNDDPTC 165
K+ W G G GPC E +
Sbjct: 187 -----------KEEPWAGG--GNAGPCLEAIVGGLEVATLVFMNLEEHPEGDIEIKGARY 233
Query: 166 IEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQ--NKMSNYDTDVFMPIFDA 223
++ N + V + E + +I+ N N + + I
Sbjct: 234 RKMDNYIVDTGYGLERFVWASKGTPTVYDAIFPEVVDTIIDNSNVSFNREDERVRRIVAE 293
Query: 224 IQQATG------------------ARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIAD 265
+ G + +ADH R + F + D
Sbjct: 294 SSKLAGIMGELRGERLNQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGD 353
Query: 266 GSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHI 325
G P N G Y+ R ++RR++R E L+ LV + K++G F + +
Sbjct: 354 GLVPSNAGAGYLARLMIRRSLRLAEE-LEL-GLDLYDLVEMHKKILGFEFDVPL---STV 408
Query: 326 REIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEER 385
+EI+ E+ + T+ KG ++ + K L D L+D++G P++L +A E+
Sbjct: 409 QEILELEKERYRTTVSKGTRLVERLVER--KKKLEKDDLIELYDSHGIPVELAVGIAAEK 466
Query: 386 GLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWF 444
G V++ + + ++ Q K + + AT + +++
Sbjct: 467 GAEVEMPKDIYAELAKRHSKAEKVQEK--KITLQNEYPAT---------------EKLYY 509
Query: 445 QDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRN 504
D T EF V+ ++L S+FY E GGQ D G++ G F V +
Sbjct: 510 DD--------PTLLEFEAEVIGVEGDFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVD 561
Query: 505 VQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDH 564
V G V+H+ + VG +V +D D R +H+ TH+L ++L++VLG+H
Sbjct: 562 VLEADGVVLHVVK----GAKPEVGTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNH 617
Query: 565 VDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCING 624
V Q G+ K R D +H + E ++ IE + N +I A + + EA+ G
Sbjct: 618 VWQAGARKEFSKARLDVTHFRRPSEEEIKEIEMLANREILANKPIKWEWMDRIEAERKFG 677
Query: 625 LRAVF--GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFAL 682
++ G +RVV +G + CGGTH +T E +
Sbjct: 678 F-RLYQGGVPPGRKIRVVQVG-----------------DDVQACGGTHCRSTGEIGMLKI 719
Query: 683 LSEEGIAKGIRRITAVT 699
L E I G+ R
Sbjct: 720 LKVESIQDGVIRFEFAA 736
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif,
amino acid binding, ligase; 2.08A {Aquifex aeolicus}
SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A
1ygb_A 3htz_A
Length = 465
Score = 599 bits (1548), Expect = 0.0
Identities = 180/425 (42%), Positives = 259/425 (60%), Gaps = 34/425 (8%)
Query: 1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 60
M +K +FLG RA + QKC+R GKHNDL+ VG + HHTFFEMLGN+S
Sbjct: 44 MVPFKNVFLGLEKRPY-----KRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFS 98
Query: 61 FGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPAS 118
FGDYFK EAIE+AWE +T+V +LP ++LY + + DE EA IW + +P+
Sbjct: 99 FGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDE--------EAYRIWNEHIGIPSE 150
Query: 119 RVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNR 178
R+ G +DNFW+MGD GPCGP SEI+ DR + D +EIWN+VF+Q+NR
Sbjct: 151 RIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYE-------GDERYLEIWNLVFMQYNR 203
Query: 179 ESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVG 238
+ +G L PLP ++DTG+G ER+ S+LQ K SN++ D+ P+ ++ +G +
Sbjct: 204 DENGVLTPLPHPNIDTGMGLERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKKY------ 257
Query: 239 ADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDG 298
+ + D+A RV+ADH+R ++FAI+DG P NEGR YV+RRILRRA+R+G L ++
Sbjct: 258 -GEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRILRRAMRFG-YKLGIENP 315
Query: 299 FFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ--- 355
F V++VV +M + +PEL+ ++ I+ EE F KTL G+E ++ Q
Sbjct: 316 FLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEG 375
Query: 356 GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGG 415
K LSG++ F +DTYGFP+DL +A E+GL +D+EGF ++E RER+R K
Sbjct: 376 RKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERARKHF-KVEAK 434
Query: 416 AIVMD 420
+
Sbjct: 435 KVKPV 439
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein
biosynthesis, NUC binding, amino acid-binding,
ATP-binding, metal-binding; HET: G5A EPE; 1.90A
{Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A*
3hxw_A* 3hxx_A* 3hxy_A*
Length = 441
Score = 598 bits (1543), Expect = 0.0
Identities = 190/423 (44%), Positives = 260/423 (61%), Gaps = 38/423 (8%)
Query: 1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 60
MNQ+K +FLG N +RA +Q+C+RAGGKHNDL++VG HHTFFEMLGN+S
Sbjct: 43 MNQFKDVFLGLDKRNY-----SRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFS 97
Query: 61 FGDYFKNEAIEWAWELLTK--VYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LP 116
FGDYFK +AI +AW LLT + LP +RL+ T + D+ EA +IW K +P
Sbjct: 98 FGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVYESDD--------EAYEIWEKEVGIP 149
Query: 117 ASRVLPFGCK-------DNFWEMGDTGPCGPCSEIHYDRTGNRDAAS--LVNNDDPTCIE 167
R++ G DNFW+MGDTGPCGPC+EI YD + D IE
Sbjct: 150 RERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIE 209
Query: 168 IWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQA 227
IWNIVF+QFNR++DG+++PLP VDT +G ER+ ++LQ+ SNYD D+F + A+ +
Sbjct: 210 IWNIVFMQFNRQADGTMEPLPKPSVDTAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKV 269
Query: 228 TGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVR 287
TGA D + + RV+ADHIR+ +F IADG P NE R YVLRRI+RRAVR
Sbjct: 270 TGA-----------TDLSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVR 318
Query: 288 YGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKF 347
+G +L A++ FF LV ++ VMG +LK+++A + +++ EE F +TL +G+
Sbjct: 319 HG-NMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALL 377
Query: 348 KKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRS 407
+ + G L G+ AF L+DTYGFP+DLT + ER + VD GF AM+E R R+R
Sbjct: 378 DEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARE 437
Query: 408 AQN 410
A
Sbjct: 438 ASG 440
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
{Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Length = 752
Score = 456 bits (1174), Expect = e-148
Identities = 164/757 (21%), Positives = 284/757 (37%), Gaps = 165/757 (21%)
Query: 1 MNQYKP-IFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNW 59
+ ++P + G ADP +Q IR D+D+VG H T FEM+ +
Sbjct: 101 IMDFQPWVISGEADPPA-----NPLVISQPSIR----FTDIDNVGITGRHFTIFEMMAHH 151
Query: 60 SFGD-----YFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF 114
+F Y+ +E +E A+E TK + + +
Sbjct: 152 AFNYPGXPIYWMDETVELAFEFFTKELXMXPEDITF------------------------ 187
Query: 115 LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFI 174
K+N W G G GP E+ Y +E+ +VF+
Sbjct: 188 -----------KENPWAGG--GNAGPAFEVLYR-----------------GLEVATLVFM 217
Query: 175 QFNRESDGS------------LKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPI-- 220
Q+ + + P+ VDTG G ERL + Q + YD + +
Sbjct: 218 QYXXAPENAPQDQVVVIXGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDAVLGYVVEP 277
Query: 221 --------------------------------FDAIQQATGARPYSGKVGADDADKVDMA 248
+++ R + A +
Sbjct: 278 LXXMAGIEKIDEKILMENSRLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYEL 337
Query: 249 YRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVV 308
+ADH + L+F +ADG P N Y+ R ++R+++R+ E+ + + +V + +
Sbjct: 338 IYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHLREL--GLEVPLSEIVALHI 395
Query: 309 KVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAF 365
+ FPE + E I E+I EE + +TL +G + ++ ++ K + +
Sbjct: 396 XELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLV 455
Query: 366 ILWDTYGFPLDLTQLMAEERGLLVDI-EGFNNAMDEARERSRSAQNKQAGGAIVMDADAT 424
++++G ++ +AE+ G+ V+I + F + + + ER++ + ++ ++
Sbjct: 456 TFYESHGLTPEIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKGEELVDFELLKDLPD 515
Query: 425 AALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQG 484
+ ++++D EF V+ ++L +++FY E G
Sbjct: 516 T--------------RRLYYED--------PFMXEFDAXVLRVIXDWVILDATAFYPEGG 553
Query: 485 GQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIA 544
GQ +D G + V NVQ G +IH E G F G V +D+ RR
Sbjct: 554 GQPYDTGVLIVNGREVXVTNVQXVGXVIIHXV---EDPGAFXEGMIVHGXIDWXRRIQHM 610
Query: 545 PNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIK 604
+HT TH+L AL VLG HV Q GS + + R D SH + E L IE + N +
Sbjct: 611 RHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVM 670
Query: 605 AELDVFSKEATLAEAKCINGLRAVF--GEVYPDPVRVVAIGRKVEDLLADPENKEWLSIS 662
+ V + A+ G ++ G V +RVV I
Sbjct: 671 EDRXVTWEWLPRTTAEQXYGF-RLYQGGVVPGREIRVVXIE----------------DWD 713
Query: 663 AELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVT 699
+ CGGTHL +T +L E I G+ RI
Sbjct: 714 VQACGGTHLPSTGLVGPIXILRTERIQDGVERIIFAC 750
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase;
zinc-binding motif, trans-editing enzyme, structural
genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP:
b.43.3.6 d.67.1.2
Length = 216
Score = 225 bits (577), Expect = 2e-68
Identities = 57/240 (23%), Positives = 90/240 (37%), Gaps = 44/240 (18%)
Query: 459 EFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSL 518
E V+ + I+L + FY GGQ D G I G V +V +
Sbjct: 17 EAKGRVLEIRDNAILLDQTIFYPTGGGQPHDRGTING----VEVLDVYKDEEGNVWHV-- 70
Query: 519 TEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQ-KGSVVLPEKL 577
+ +F VG+EV K+D+D R + HT H+L L EVLG+ Q GS + EK
Sbjct: 71 VKEPEKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKG 130
Query: 578 RFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPV 637
R+D ++ + ++ +I S+ N+ + G ++ E
Sbjct: 131 RYDIAYPENLNKY-KEQIISLFNKYVDE-----------------GGEVKIWWE---GDR 169
Query: 638 RVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITA 697
R I CGGTH+ + +E L I +G +R+
Sbjct: 170 RYTQIR----------------DFEVIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLEM 213
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase,
protein structure initiative; 2.00A {Clostridium
perfringens}
Length = 241
Score = 222 bits (568), Expect = 7e-67
Identities = 53/248 (21%), Positives = 88/248 (35%), Gaps = 32/248 (12%)
Query: 461 IESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTE 520
IE + ++L ++F+ GGQ+ D G I+G V +V G V H+
Sbjct: 21 IEVKEIDGKFHVLLDQTAFFPGGGGQMGDLGLIDG----IKVLDVYEEEGKVYHVLE--- 73
Query: 521 GAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFD 580
+ + C++D++RR H H+L+ ++ G + G + E D
Sbjct: 74 --KEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANT--CGFHLGKEISTVD 129
Query: 581 FSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVV 640
+D + +R E N I L+V S + E K + R + +R+V
Sbjct: 130 IVG--FLDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKV-KTRRAL-PKTDEEIRIV 185
Query: 641 AIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTT 700
I + C G H NTR+ + + E K RI V
Sbjct: 186 EIV----------------GLDLNACCGVHPRNTRDLQVIKIRRWEKH-KNATRIEYVAG 228
Query: 701 GLAYKAFE 708
A
Sbjct: 229 NRAVSEGH 236
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural
genomics/proteomics initiative RSGI, structural
genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2
PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Length = 157
Score = 163 bits (416), Expect = 5e-47
Identities = 32/167 (19%), Positives = 53/167 (31%), Gaps = 33/167 (19%)
Query: 540 RKLIAPNHTCTHMLNFALREVLGDHVDQ-KGSVVLPEKLRFDFSHGKPVDPEHLRRIESI 598
+ H+ H++ A+ +VLG + V K + E +R IE +
Sbjct: 2 YSIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERL 61
Query: 599 VNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDP---------VRVVAIGRKVEDL 649
NE++K + E EA+ +FGE D ++VV I
Sbjct: 62 ANEKVKENAPIKIYELPREEAE------KMFGEDMYDLFPVPEDVRILKVVVIE------ 109
Query: 650 LADPENKEWLSISAELCGGTHLSNTREAEAFALLSEE-GIAKGIRRI 695
+ C H T E + +KG+ I
Sbjct: 110 ----------DWNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEI 146
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.7 bits (154), Expect = 2e-10
Identities = 79/607 (13%), Positives = 162/607 (26%), Gaps = 186/607 (30%)
Query: 142 SEIHYDRTGNRDAASLVNND---DPTCIEIWNIVFIQF-NRESDGSLKPLPAKHVDTGLG 197
E Y +D S+ + + C ++ ++ E D + +K +G
Sbjct: 12 GEHQY---QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM---SKDAVSGT- 64
Query: 198 FERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIR 257
RL L +K F+ ++ +++ Y+ + I+
Sbjct: 65 -LRLFWTLLSKQEEM-VQKFV---------------------EEVLRIN--YKFLMSPIK 99
Query: 258 TLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPE 317
T P R Y+ +R D +N VF +
Sbjct: 100 TEQRQ------PSMMTRMYIEQR----------------DRLYND---------NQVFAK 128
Query: 318 LK-QREAHIREII-AAEEAS------------FGKTLLKGIEKFKKAAQDVQ-GKVLSGQ 362
R ++ A E GKT + A KV
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--------ALDVCLSYKVQCKM 180
Query: 363 DAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDE--ARERSRSAQNKQAGGAIVMD 420
D I W ++ + LL I+ + + + + R + ++
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 421 ADATAALHKRGVLATDDSFKFIWFQDHKSVIKA--------IYTGSEFIESVVPGN---E 469
++ +L + + + A + T + + +
Sbjct: 241 KP-----YENCLLVLLN----VQ---NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 470 VGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNV-----QIYGG--FVIH-IG-SLTE 520
+ + S + ++ + L + ++ + I S+ +
Sbjct: 289 ISLDHHSMTLTPDEV---------KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 521 GAGRFSVGEEVICKVDYDR-RKLIAPNHTCTHMLNFA-LRE------VLGDHVDQKGSVV 572
G + + V+ D+ +I + ++L A R+ V
Sbjct: 340 GLATW----DNWKHVNCDKLTTIIE---SSLNVLEPAEYRKMFDRLSVFPPSAH------ 386
Query: 573 LPEK-LRFDFSHGKPVDPE----HLRRIESIVNEQIKAE--------LDVFSKEATLAEA 619
+P L + D L + S+V +Q K L++ K
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKESTISIPSIYLELKVKLENEYA- 444
Query: 620 KCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLS-ISAELCGGTHLSNTREAE 678
L + Y P +DL+ ++ + S I G HL N E
Sbjct: 445 -----LHRSIVDHYNIPK-----TFDSDDLIPPYLDQYFYSHI------GHHLKNIEHPE 488
Query: 679 AFALLSE 685
L
Sbjct: 489 RMTLFRM 495
Score = 52.9 bits (126), Expect = 4e-07
Identities = 94/671 (14%), Positives = 176/671 (26%), Gaps = 222/671 (33%)
Query: 40 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPAD--RLYATY----F 93
L ++ E+L +Y ++ + R P+ R+Y +
Sbjct: 71 LLSKQEEMVQKFVEEVLRI----NY------KFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 94 GGDEKAGLAPDNEARD-------IWLKFL-PASRVLPFGCKDNFWEMGDTGPCGPCSEIH 145
++ A N +R L L PA VL G + G G + +
Sbjct: 121 NDNQV--FAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-------VL--G-SGK-TWV- 166
Query: 146 YDRTGNRDAASLVNNDDPTCIEIWNIVFIQF-NRESDGSLKPLPAKHVDTGLGFERLTSI 204
A + + C + I ++ N S ++ E L +
Sbjct: 167 --------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-------------LEMLQKL 205
Query: 205 LQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADK------VDMAYR---VVADH 255
L N+ + + K+ Y +V +
Sbjct: 206 LYQIDPNW-------------TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 256 IRTLSFAIA-DGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVK--VMG 312
++ A + SC +IL + + L +
Sbjct: 253 VQNAKAWNAFNLSC-----------KIL---------LTTRFKQVTDFLSAATTTHISLD 292
Query: 313 DVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSG-----QDAFIL 367
L E ++ K L + + + LS +D
Sbjct: 293 HHSMTLTPDEV---------KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 368 WDTYGFPL--DLTQLM---------AEERGLLVDIEGFN--------------NAMDEAR 402
WD + LT ++ AE R + + F + ++
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 403 ERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIE 462
+V++ LHK ++ ++ I +IY +E
Sbjct: 404 VM------------VVVN-----KLHKYSLVEK-------QPKESTISIPSIY-----LE 434
Query: 463 SVVPGNEVG-----IVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIG- 516
V IV Y D+ L FY HIG
Sbjct: 435 LKVKLENEYALHRSIV----DHYNIPKTFDSDDLIPPYLDQYFYS-----------HIGH 479
Query: 517 --SLTEGAGRFSVGEEVICKVDYD--RRKLIAPNHTCTHMLNFA-LREVLGDHVDQKGSV 571
E R ++ V +D+ +K+ H T + L
Sbjct: 480 HLKNIEHPERMTLFRMVF--LDFRFLEQKIR---HDSTAWNASGSILNTLQQ-------- 526
Query: 572 VLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVF-SKEATLAEAKCINGLRAVFG 630
L+F + DP++ R + +I++ K E ++ SK L L A
Sbjct: 527 -----LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI----ALMAEDE 577
Query: 631 EVYPDPVRVVA 641
++ + + V
Sbjct: 578 AIFEEAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 6e-07
Identities = 87/597 (14%), Positives = 168/597 (28%), Gaps = 217/597 (36%)
Query: 69 AIEWAWELLTKVYRLPADRLYATYFGGDEKA---GLAPDNEAR---DIWLKFLP--ASRV 120
++E + T + A +L F G A D+E ++ KFL +S V
Sbjct: 15 SLEHVLLVPTASF-FIASQLQEQ-FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 121 LPFGCKDNFWEMGDTGPCGPCSEI------HYDRT--GNRD----AASLVNNDDPTCIEI 168
P G ++ ++ D AA L+ +D T ++
Sbjct: 73 EP-------------SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 169 WNIV------FIQFNRESDGSLKPLPAKHVDTG-------LG--------FERLTSILQN 207
++ I R D + V G G FE L +
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL--- 176
Query: 208 KMSNYDT------DVFMPIFDAIQQATGARPYSGKV---GAD------DADKV-DMAYRV 251
Y T D+ + + + + KV G + + D Y +
Sbjct: 177 ----YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 252 VADHIRTLSF--------------AIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQ- 296
+S A G PG LR L+ A + ++ A
Sbjct: 233 SI----PISCPLIGVIQLAHYVVTAKLLGFTPGE------LRSYLKGATGHSQGLVTAVA 282
Query: 297 -------DGFFNGLVNIVVKVM---G----DVFPELKQREAHIREIIAAEE--ASF---- 336
+ FF + + V+ G + +P + + + + E S
Sbjct: 283 IAETDSWESFFVSVRK-AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 337 -G---KTLLKGIEKFKK---AAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLV 389
+ + + K A + V+ +++G ++ + G P L
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV--S-GPPQSL------------ 386
Query: 390 DIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIW------ 443
G N + +A+ S Q++ +R + KF
Sbjct: 387 --YGLNLTLRKAKAPSGLDQSR-------------IPFSERKL-------KFSNRFLPVA 424
Query: 444 --FQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQ-GGQIFDEGFIEGLFGSF 500
F H S + +V + SF A+ ++D +G
Sbjct: 425 SPF--H----------SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD--TFDG----- 465
Query: 501 YVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICK--VDYDRRKLIAPNHTCTHMLNF 555
++++ G + + + I + V ++ TH+L+F
Sbjct: 466 --SDLRVLSGSISE--RIVD----------CIIRLPVKWET----TTQFKATHILDF 504
Score = 51.6 bits (123), Expect = 1e-06
Identities = 49/288 (17%), Positives = 81/288 (28%), Gaps = 107/288 (37%)
Query: 266 GS-CPGNEGRE-Y----VLRRILRRAVRYGSEVLKAQDGFFNGLVNIVV---KVMGDVFP 316
GS G G + Y + + RA + + GF +++IV+ + F
Sbjct: 1625 GSQEQG-MGMDLYKTSKAAQDVWNRADNHFKDTY----GF--SILDIVINNPVNLTIHFG 1677
Query: 317 ELKQREAHIRE---IIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGF 373
K + IRE + E GK + I FK+ + +
Sbjct: 1678 GEKGKR--IRENYSAMIFETIVDGKLKTEKI--FKEINEHSTSYTFRSEKGL-------- 1725
Query: 374 PLDLTQ-----LMA---------EERGLLVDIEGFNNAMDEARERSRSAQNKQAG---G- 415
L TQ L + +GL+ F AG G
Sbjct: 1726 -LSATQFTQPALTLMEKAAFEDLKSKGLIPADATF------------------AGHSLGE 1766
Query: 416 -------AIVMD-ADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPG 467
A VM + RG ++ VP
Sbjct: 1767 YAALASLADVMSIESLVEVVFYRG---------------------------MTMQVAVPR 1799
Query: 468 NEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHI 515
+E+G ++ A G++ E L + V V G+++ I
Sbjct: 1800 DELGR--SNYGMIAINPGRVAASFSQEAL--QYVVERVGKRTGWLVEI 1843
Score = 49.3 bits (117), Expect = 6e-06
Identities = 92/594 (15%), Positives = 170/594 (28%), Gaps = 185/594 (31%)
Query: 362 QDAFILW---DTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIV 418
Q+ F T GF D E L+ G+ + E S+ Q Q +
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAE--LVGKFLGY---VSSLVEPSKVGQFDQVLNLCL 88
Query: 419 MDADATAALHKRGV------LATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGI 472
+ + L + L ++ + K +IK T +
Sbjct: 89 TEFE-NCYLEGNDIHALAAKLLQENDTTLV---KTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 473 VLASSS-----FYAEQGGQIFDEGFIEGLFG---SFYVRNVQIYGGFVIHIGSLTEGAG- 523
+ + A GGQ G + F Y Q Y V G L + +
Sbjct: 145 LFRAVGEGNAQLVAIFGGQ----GNTDDYFEELRDLY----QTYHVLV---GDLIKFSAE 193
Query: 524 ------RFSVGEEVICKVDYDRRKLI-----APNH----TC---------THMLNFA-LR 558
R ++ E + + + + P+ + + ++
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 559 EVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAE 618
++LG P +LR + G + +V AE D S E+
Sbjct: 254 KLLGFT---------PGELR-SYLKGA------TGHSQGLVTAVAIAETD--SWESFFVS 295
Query: 619 A-KCIN-----GLRA--VF----------------GEVYPDP-VRVVAIGRK-VEDLLAD 652
K I G+R + E P P + + + ++ V+D +
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 653 -----PENKEWLSISAELCGGTHLSNTREAEAFAL----LSEEGIAKGIRRITAVTTGLA 703
P K + IS L N + + S G+ +R+ A +GL
Sbjct: 356 TNSHLPAGK-QVEIS--------LVNGA--KNLVVSGPPQSLYGLNLTLRKAKA-PSGL- 402
Query: 704 YKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAA----IPAP------KKADIR 753
D S+I S + K+ + + +P A
Sbjct: 403 ---------------DQSRIPFS---------ERKLKFSNRFLPVASPFHSHLLVPA--- 435
Query: 754 AKIALLQNQVRKAQKKVAEENLQKAVKVATETAE---AAASNGKPF---CISRVEVGLDA 807
L+ + K +++Q V T + + CI R+ V +
Sbjct: 436 --SDLINKDLVKNNVSFNAKDIQIPVY-DTFDGSDLRVLSGSISERIVDCIIRLPVKWET 492
Query: 808 AAVREAVLKVIE-----QKGMPVMVFSTDETTNKAVVCAGVPEKSDQS----KQ 852
+A +++ G+ V+ + T V+ AG + + KQ
Sbjct: 493 TTQFKA-THILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 49.3 bits (117), Expect = 6e-06
Identities = 61/358 (17%), Positives = 107/358 (29%), Gaps = 133/358 (37%)
Query: 516 GSLTEGAGR-----FSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGS 570
GS +G G ++V ++R A NH F++ +++ ++
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDV-----WNR----ADNHF-KDTYGFSILDIVINN------ 1668
Query: 571 VVLPEKLRFDFSHGKPVDPEHLRRI---------ESIVNEQIKAELDVFSKEATLAEAKC 621
P L F E +RI E+IV+ ++K E +F KE
Sbjct: 1669 ---PVNLTIHF------GGEKGKRIRENYSAMIFETIVDGKLKTE-KIF-KEINEHSTSY 1717
Query: 622 INGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTH--LSNTREAEA 679
+ + LL+ + T L+ +A A
Sbjct: 1718 T----------FRSE----------KGLLSATQF-------------TQPALTLMEKA-A 1743
Query: 680 FALLSEEGIAKGIRRITAVTTG--------LAYKA----FEAACSLEKEVDDASKIEGSL 727
F L +G+ A G LA A E+ + V G
Sbjct: 1744 FEDLKSKGLIPA----DATFAGHSLGEYAALASLADVMSIESLVEV---V----FYRGMT 1792
Query: 728 LEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAV-KVATETA 786
++ V + + IA+ +V + ++E LQ V +V T
Sbjct: 1793 MQVAVPRDELGRSNYGM-----------IAINPGRVAAS---FSQEALQYVVERVGKRTG 1838
Query: 787 ---EAAASN--GKPFCISRVEVGLDAAAVREA--VLKVIEQKG-----MPVMVFSTDE 832
E N + + + G D A+ VL I+ + + S +E
Sbjct: 1839 WLVEIVNYNVENQQYVAA----G-DLRALDTVTNVLNFIKLQKIDIIELQKS-LSLEE 1890
Score = 35.0 bits (80), Expect = 0.13
Identities = 44/296 (14%), Positives = 86/296 (29%), Gaps = 95/296 (32%)
Query: 167 EIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFD-AIQ 225
++WN +D H GF + I+ N N T F I+
Sbjct: 1644 DVWN--------RAD--------NHFKDTYGF-SILDIVINNPVNL-TIHFGGEKGKRIR 1685
Query: 226 QATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRR----- 280
+ A + + D K + ++ + +H + +F + +L
Sbjct: 1686 ENYSAMIF--ETIVDGKLKTEKIFKEINEHSTSYTF----------RSEKGLLSATQFTQ 1733
Query: 281 --ILRRAVRYGS-EVLKAQ-----DGFFNG--------LVNIVVKVMGDVFP-----ELK 319
+ + + E LK++ D F G L + DV E+
Sbjct: 1734 PALT--LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALA-----SLADVMSIESLVEV- 1785
Query: 320 QREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQ 379
R + + G + A + S + + + +
Sbjct: 1786 ---VFYRGMTMQVAVPRDEL---GRSNYGMIAINPGRVAASFSQEALQY--------VVE 1831
Query: 380 LMAEERGLLVDIEGFNNAMDEARERSRSAQNKQ---AGGAIVMDADATAALHKRGV 432
+ + G LV+I +N +N+Q AG +D T L+ +
Sbjct: 1832 RVGKRTGWLVEIVNYN------------VENQQYVAAGDLRALDT-VTNVLNFIKL 1874
Score = 33.9 bits (77), Expect = 0.28
Identities = 48/337 (14%), Positives = 87/337 (25%), Gaps = 111/337 (32%)
Query: 625 LRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGG--THLSNTREAEAFAL 682
L+ F ++ P+P E AD E + AEL G ++S+ E
Sbjct: 33 LQEQFNKILPEP---------TEGFAADDE----PTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 683 LSEEGIAKGIRRITAVTTGLAYKAFE-----------AACSLEKEVD------------- 718
+ + L FE A L +E D
Sbjct: 80 FDQ--VLN-----------LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 719 -DASKIEGSLLEKTVAS--LKSKVDGAA------------------------IPAPKKAD 751
A + +K S ++ +G A D
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD 186
Query: 752 -IRAKIALLQNQVRKAQKKVAEENLQKAVKVAT--ETAEAAASNG----KPFCISRVEVG 804
I+ L +R AE+ + + + E P IS +G
Sbjct: 187 LIKFSAETLSELIRTTLD--AEKVFTQGLNILEWLENPSNTPDKDYLLSIP--ISCPLIG 242
Query: 805 LDAAAVREAVLKVIEQKGM-PVMVFSTDETT---NKAVVCAGVPEKSDQSKQLEVSEWLT 860
+ A K++ G P + S + ++ +V A ++D +
Sbjct: 243 VIQLAHYVVTAKLL---GFTPGELRSYLKGATGHSQGLVTAVAIAETD-----SWESFFV 294
Query: 861 AALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAE 897
+ + + + G + P L
Sbjct: 295 SVRKAIT---------VLFFIGVRCYEAYPNTSLPPS 322
Score = 33.5 bits (76), Expect = 0.39
Identities = 54/338 (15%), Positives = 91/338 (26%), Gaps = 142/338 (42%)
Query: 88 LYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLP--FG------CKDNFWEMGDTGPCG 139
LY T A+D+W + A +G +N
Sbjct: 1635 LYKTS------------KAAQDVWNR---ADNHFKDTYGFSILDIVINN----------- 1668
Query: 140 PCS-EIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA-KHVD---T 194
P + IH+ + + N + F DG LK K ++ T
Sbjct: 1669 PVNLTIHFGGEKGK---RIRENYSA----------MIFETIVDGKLKTEKIFKEINEHST 1715
Query: 195 GLGFE------RLTSILQNKMSNYDTDVFMP--------IFDAIQQATGARP-------- 232
F T Q P F+ ++ G P
Sbjct: 1716 SYTFRSEKGLLSATQFTQ------------PALTLMEKAAFEDLKSK-GLIPADATFAGH 1762
Query: 233 ----YSGKVGADDADKVDMAYRVVADHIR--TLSFAIADGS--------CPGNEGREYVL 278
Y+ D ++ VV R T+ A+ N GR V
Sbjct: 1763 SLGEYAALASLADVMSIESLVEVV--FYRGMTMQVAVPRDELGRSNYGMIAINPGR--VA 1818
Query: 279 RRILRRAVRYGSEVLKAQDGFFNGLVN-------IVVKVMGDVFPELKQREAHIREIIAA 331
+ A++Y E + + G+ +VN V GD + A
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA--GD--------------LRAL 1862
Query: 332 EEASFGKTLLKGIEKFKK----------AAQDVQGKVL 359
+ + +L I K +K + ++V+G +
Sbjct: 1863 DTVT---NVLNFI-KLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 30.4 bits (68), Expect = 3.9
Identities = 28/216 (12%), Positives = 62/216 (28%), Gaps = 49/216 (22%)
Query: 704 YKAFEAACSLEKEV-DDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQ 762
YK +AA ++V + A + S+ V P I + +
Sbjct: 1636 YKTSKAA----QDVWNRADN---HFKDTYGFSILDIVINN----PVNLTIHFGGEKGK-R 1683
Query: 763 VRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDA--------AAVREAV 814
+R+ + E + + + + + + L A + +A
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 815 LKVIEQKGM--PVMVF---STDETTNKAVVC-AGVPEKSDQSKQLEVSEWL--------T 860
+ ++ KG+ F S E A+ A V + + + T
Sbjct: 1744 FEDLKSKGLIPADATFAGHSLGEYA--ALASLADV---------MSIESLVEVVFYRGMT 1792
Query: 861 AALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAA 896
+ + G+ G+ + +V + A
Sbjct: 1793 MQVAVPRDELGRSNYGMI---AINPGRVAASFSQEA 1825
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 44.9 bits (107), Expect = 2e-05
Identities = 24/179 (13%), Positives = 56/179 (31%), Gaps = 23/179 (12%)
Query: 726 SLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATET 785
LL + + L+ + + + + + +K++ A A
Sbjct: 14 RLLREASSILRVEPA----------KLPKTVERFFEEWKDQRKEIERLKSVIADLWADIL 63
Query: 786 AEAAAS-NGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVP 844
E A + V+ D A+++ ++ E+ + ++ + K V
Sbjct: 64 MERAEEFDSMKVVAEVVDA--DMQALQKLAERLAEKGAVGCLMAKGEG---KVFVVTFS- 117
Query: 845 EKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMKL 903
++ + E L + KG G G+ +A G +D+ F +
Sbjct: 118 -----GQKYDARELLREIGRVAKGS-GGGRKDVAQGAVQQLLDREEMLDVIFRFLSEHE 170
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A
{Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1
d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Length = 645
Score = 45.2 bits (108), Expect = 9e-05
Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 24/111 (21%)
Query: 580 DFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF-GEVYPDPVR 638
DF + + + +IE + + + + + K + EA + +F + Y
Sbjct: 107 DFDIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEA------KELFSNDEY----- 155
Query: 639 VVAIGRKVEDLLADPENKEWLSISAE-----LCGGTHLSNTREAEAFALLS 684
K+E L+ E +++ ++ LC G H+ +T + + F LLS
Sbjct: 156 ------KLE-LIDAIPEDENVTLYSQGDFTDLCRGVHVPSTAKIKEFKLLS 199
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati
translational regulation, protein/RNA, ligase-RNA
complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 44.5 bits (106), Expect = 2e-04
Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 25/113 (22%)
Query: 580 DFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF---GEVYPDP 636
D + + E + +E ++E + DV K+ + EA R F GE Y
Sbjct: 105 DVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEA------RETFANRGESY--- 155
Query: 637 VRVVAIGRKVEDLLADPENKEWLSISAE-----LCGGTHLSNTREAEAFALLS 684
KV L + + + + +C G H+ N R F L+
Sbjct: 156 --------KVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMK 200
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP:
d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Length = 224
Score = 40.2 bits (95), Expect = 0.001
Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 25/113 (22%)
Query: 580 DFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF---GEVYPDP 636
D + + E + +E ++E + DV K+ + EA R F GE Y
Sbjct: 105 DVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEA------RETFANRGESY--- 155
Query: 637 VRVVAIGRKVEDLLADPENKEWLSISAE-----LCGGTHLSNTREAEAFALLS 684
KV L + + + + +C G H+ N R F L+
Sbjct: 156 --------KVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMK 200
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.093
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 14/43 (32%)
Query: 714 EKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKI 756
EK+ K++ ASLK D +A PA A I+A +
Sbjct: 18 EKQ--ALKKLQ--------ASLKLYADDSA-PA--LA-IKATM 46
Score = 31.1 bits (69), Expect = 0.94
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 618 EAKCINGLRAVFGEVY-PDPVRVVAIGRKVE 647
E + + L+A ++Y D +AI +E
Sbjct: 18 EKQALKKLQASL-KLYADDSAPALAIKATME 47
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 33.8 bits (77), Expect = 0.29
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 678 EAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSL---------- 727
+ EG+A GIR I A+ + K EA S E I SL
Sbjct: 470 DFLEKGKSEGVATGIRYIDALCFKITSKLEEAFVSNTTEFKVKVPIVRSLSDINLKIDDI 529
Query: 728 LEKTVASLKSKVDGAAIPAPKKADIRAKI 756
K + S +D + P ++ KI
Sbjct: 530 ALKQIMSKNKVID---VRGPVFLNVEVKI 555
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 33.4 bits (76), Expect = 0.40
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 678 EAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSL---------- 727
+ EG+A GIR I A+ + K EA S E I SL
Sbjct: 470 DFLEKGKSEGVATGIRYIDALCFKITSKLEEAFVSNTTEFKVKVPIVRSLSDINLKIDDI 529
Query: 728 LEKTVASLKSKVDGAAIPAPKKADIRAKI 756
K + S +D + P ++ KI
Sbjct: 530 ALKQIMSKNKVID---VRGPVFLNVEVKI 555
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 33.0 bits (75), Expect = 0.47
Identities = 24/119 (20%), Positives = 39/119 (32%), Gaps = 26/119 (21%)
Query: 648 DLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAF 707
+++ PE+ + + + EG+A GIR I A+ + K
Sbjct: 453 NVIGIPESFDGV-------------KEEFKDFLEKGKSEGVATGIRYIDALCFKITSKLE 499
Query: 708 EAACSLEKEVDDASKIEGSL----------LEKTVASLKSKVDGAAIPAPKKADIRAKI 756
EA S E I SL K + S +D + P ++ KI
Sbjct: 500 EAFVSNTTEFKVKVPIVRSLSDINLKIDDIALKQIMSKNKVID---VRGPVFLNVEVKI 555
>1im3_D Cytomegalovirus protein US2; beta sheet, beta sandwhich,
immunoglobulin (IG) fold, immunoglobulin (IG)-like
domain, protein complex; 2.20A {Human herpesvirus 5}
SCOP: b.1.18.5
Length = 95
Score = 30.9 bits (69), Expect = 0.48
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 483 QGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDY 537
G++F G I G F YGG ++ + F GE + V
Sbjct: 13 DNGKLFARGSIVGNMSRFVFDPKADYGGVGENLYVHADDV-EFVPGESLKWNVRN 66
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 32.9 bits (75), Expect = 0.56
Identities = 32/148 (21%), Positives = 56/148 (37%), Gaps = 34/148 (22%)
Query: 634 PDPVRVVAI-----GRKVEDLLADPENKEWLSISAELCGGTHLSNTR----------EAE 678
P P +A GR V + + E + +LCG + + + +
Sbjct: 395 PSPCSFLAFEGEMMGRNVRVYVVEEEE------NTKLCGPAYANEVVVYKGDIYGIPKTK 448
Query: 679 AFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSL----------L 728
+ EEG+ GIR I A K EAA ++EV ++I +L +
Sbjct: 449 KWRSFFEEGVPTGIRYIDGFAYYAARKVEEAAMREQEEVKVKARIVENLSDINLYIHENV 508
Query: 729 EKTVASLKSKVDGAAIPAPKKADIRAKI 756
+ + K K+D + P ++A+I
Sbjct: 509 RRYILWKKGKID---VRGPLFVTVKAEI 533
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger,
structural genomics, PSI-2, protein structure
initiative; NMR {Methanocaldococcus jannaschii}
Length = 80
Score = 29.5 bits (67), Expect = 0.85
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 16/61 (26%)
Query: 498 GSFY---VRNVQIYGGFV---------IHIGSLTEG-AGRFSVGEEVICKV---DYDRRK 541
G FY V ++ YG F+ + + +VG+E+I + ++R+
Sbjct: 6 GKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRLENLNVGDEIIVQAIDVRPEKRE 65
Query: 542 L 542
+
Sbjct: 66 I 66
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 32.3 bits (73), Expect = 0.85
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 678 EAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSL---------- 727
+ EG+A GIR I A+ + K EA S E I SL
Sbjct: 470 DFLEKGKSEGVATGIRYIDALCFKITSKLEEAFVSNTTEFKVKVPIVRSLSDINLKIDDI 529
Query: 728 LEKTVASLKSKVDGAAIPAPKKADIRAKI 756
K + S +D + P ++ KI
Sbjct: 530 ALKQIMSKNKVID---VRGPVFLNVEVKI 555
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant;
winged helix domain, RNA polymerase III C39 subunit,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 29.8 bits (67), Expect = 1.1
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 16/96 (16%)
Query: 688 IAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEG-SLLEKTVASL--KSKVDGAAI 744
+ G + TGL Y+ K+ +A K++G EK V + + G
Sbjct: 5 SSGGQLDLLRSNTGLLYRI--------KDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWS 56
Query: 745 PAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVK 780
D+R K L ++ K K + + L KAVK
Sbjct: 57 -----RDVRYKSNLPLTEINKILKNLESKKLIKAVK 87
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural
genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Length = 549
Score = 31.5 bits (71), Expect = 1.4
Identities = 21/119 (17%), Positives = 33/119 (27%), Gaps = 26/119 (21%)
Query: 648 DLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAF 707
++ P E + EEG++ IR I + L K
Sbjct: 446 NIYGIPPTFEG-------------VKEQYIPILKKAKEEGVSTNIRYIDGIIYKLVAKIE 492
Query: 708 EAACSLEKEVDDASKIEGSL----------LEKTVASLKSKVDGAAIPAPKKADIRAKI 756
EA S E I SL K + +D + P + + +I
Sbjct: 493 EALVSNVDEFKFRVPIVRSLSDINLKIDELALKQIMGENKVID---VRGPVFLNAKVEI 548
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 1.8
Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 34/95 (35%)
Query: 588 DPEHLR--RIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRK 645
+PE +R R E +++ ELD A R
Sbjct: 83 EPESIRKWREEQ--RKRL-QELDA-------ASKVMEQEWREK----------------- 115
Query: 646 VEDLLADPENKEWLSISAELCGGTHLSNTREAEAF 680
A + +EW +E ++N +AF
Sbjct: 116 -----AKKDLEEWNQRQSEQVEKNKINNRIADKAF 145
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic
hypermutat protein-DNA complex, DNA mispair, cancer;
HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B*
2o8e_B* 2o8f_B*
Length = 1022
Score = 31.2 bits (71), Expect = 2.0
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 13/108 (12%)
Query: 314 VFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGF 373
++ E + I + ++A E K + K I ++ A + K+L + + G
Sbjct: 506 MYEETTYSKKKIIDFLSALEGF--KVMCKIIGIMEEVADGFKSKILKQVISLQTKNPEGR 563
Query: 374 PLDLTQL-----------MAEERGLLVDIEGFNNAMDEARERSRSAQN 410
DLT A + GL+ GF++ D+A R +
Sbjct: 564 FPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQ 611
>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD,
ATP-binding, nucleotide-binding, selenium, transferase;
HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A*
Length = 394
Score = 29.5 bits (66), Expect = 5.6
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 769 KVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVF 828
KV ++ LQK ++ E + R+ +G+D + + G +V
Sbjct: 34 KVPQDVLQKLLESLQENHFQEDEQFLGAVMPRLGIGMDTCVIP-------LRHGGLSLVQ 86
Query: 829 STD 831
+TD
Sbjct: 87 TTD 89
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 29.4 bits (67), Expect = 6.9
Identities = 16/99 (16%), Positives = 38/99 (38%), Gaps = 22/99 (22%)
Query: 712 SLEKEVDDASKIEGSLLEKTVASLKSKVDG---------AAIPAPKKADIRAKIALLQNQ 762
+L+KE D S+ +E +A L ++ + K + + ++ ++ +
Sbjct: 419 ALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREIL--RKLREAQHRLDEVRRE 476
Query: 763 VRKAQK-----KVAE------ENLQKAVKVATETAEAAA 790
+ A++ + AE L+ V+ +E A
Sbjct: 477 IELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGAR 515
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 29.1 bits (66), Expect = 6.9
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 741 GAAIPAPKKADIRAK-IALLQNQVRKAQKKVAEENLQKAVKV 781
+ A +K D+ + L +NQ Q+ VA ++ +V
Sbjct: 77 ATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRV 118
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase;
1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A*
3six_A*
Length = 330
Score = 29.0 bits (64), Expect = 7.3
Identities = 19/148 (12%), Positives = 39/148 (26%), Gaps = 8/148 (5%)
Query: 140 PCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQ-FNRESDGSLKPLPAKHVDTGLGF 198
P +I D + ++ P WN I NR + +
Sbjct: 60 PVEDIAGVPVICDDRVNQLSFPGPFFPRWWNRPSIDCINRPDEQIFRERDELTELFQARE 119
Query: 199 ERLTSILQN---KMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADH 255
+ + + M + IF I+ R ++ + ++ H
Sbjct: 120 DSEANTIVCDACLMWRCSEEAERLIFRNIKL----RSEIRARIDALYEEHFSGHSIIGVH 175
Query: 256 IRTLSFAIADGSCPGNEGREYVLRRILR 283
+R + P E L ++
Sbjct: 176 VRHGNGEDIMEHAPYWADSELALHQVCM 203
>3kd4_A Putative protease; structural genomics, joint center for STR
genomics, JCSG, protein structure initiative, PSI-2,
hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc
8503}
Length = 506
Score = 29.1 bits (64), Expect = 8.1
Identities = 12/127 (9%), Positives = 34/127 (26%), Gaps = 12/127 (9%)
Query: 143 EIHYDRTGNRDAASLVNNDDPT--CIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFER 200
+ G+ A ++D + NI + + P T +
Sbjct: 154 PLACGLYGSPVKAVEESHDGIKEVHWTLRNIPASSREAFQPKNREASPHLVASTYPSGKA 213
Query: 201 LTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLS 260
+ L ++ + ++ +KV++ + +++ T
Sbjct: 214 ALATLDKRLKESQGYESKTFAQFLTDK----------SGNEQEKVNIIRDHILNNLSTCP 263
Query: 261 FAIADGS 267
+A
Sbjct: 264 IPMAMTG 270
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 28.7 bits (65), Expect = 8.6
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 741 GAAIPAPKKADIRAK-IALLQNQVRKAQKKVAEENLQKAVKV 781
A + D+ + L +NQ + E + + +V
Sbjct: 85 STMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEV 126
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus
abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Length = 262
Score = 28.3 bits (64), Expect = 9.2
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 755 KIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNG 793
K+A +Q + + ++N KA + + A+ G
Sbjct: 3 KVAYVQMNPQILEP---DKNYSKAE----KLIKEASKQG 34
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.395
Gapped
Lambda K H
0.267 0.0874 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,271,703
Number of extensions: 936216
Number of successful extensions: 2683
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2613
Number of HSP's successfully gapped: 75
Length of query: 904
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 802
Effective length of database: 3,853,851
Effective search space: 3090788502
Effective search space used: 3090788502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.4 bits)