RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 002583
(904 letters)
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex
aeolicus [TaxId: 63363]}
Length = 236
Score = 228 bits (582), Expect = 2e-69
Identities = 101/214 (47%), Positives = 135/214 (63%), Gaps = 22/214 (10%)
Query: 1 MNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWS 60
M +K +FLG RA + QKC+R GKHNDL+ VG + HHTFFEMLGN+S
Sbjct: 43 MVPFKNVFLGLEKRPY-----KRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFS 97
Query: 61 FGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPAS 118
FGDYFK EAIE+AWE +T+V +LP ++LY + + D EA IW + +P+
Sbjct: 98 FGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDD--------EEAYRIWNEHIGIPSE 149
Query: 119 RVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNR 178
R+ G +DNFW+MGD GPCGP SEI+ DR D +EIWN+VF+Q+NR
Sbjct: 150 RIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEE-------YEGDERYLEIWNLVFMQYNR 202
Query: 179 ESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNY 212
+ +G L PLP ++DTG+G ER+ S+LQ K SN+
Sbjct: 203 DENGVLTPLPHPNIDTGMGLERIASVLQGKNSNF 236
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of
alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId:
63363]}
Length = 221
Score = 160 bits (405), Expect = 3e-45
Identities = 78/204 (38%), Positives = 123/204 (60%), Gaps = 11/204 (5%)
Query: 213 DTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNE 272
+ D+ P+ ++ +G + + + D+A RV+ADH+R ++FAI+DG P NE
Sbjct: 1 EIDIIFPLIQFGEEVSGKKY-------GEKFETDVALRVIADHLRAITFAISDGVIPSNE 53
Query: 273 GREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAE 332
GR YV+RRILRRA+R+G + L ++ F V++VV +M + +PEL+ ++ I+ E
Sbjct: 54 GRGYVIRRILRRAMRFGYK-LGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGE 112
Query: 333 EASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLV 389
E F KTL G+E ++ Q K LSG++ F +DTYGFP+DL +A E+GL +
Sbjct: 113 EKRFIKTLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGI 172
Query: 390 DIEGFNNAMDEARERSRSAQNKQA 413
D+EGF ++E RER+R +A
Sbjct: 173 DLEGFQCELEEQRERARKHFKVEA 196
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 129
Score = 104 bits (260), Expect = 6e-27
Identities = 34/164 (20%), Positives = 57/164 (34%), Gaps = 38/164 (23%)
Query: 536 DYDRRKLIAPNHTCTHMLNFALREVLGDHV-DQKGSVVLPEKLRFDFSHGKPVDPEHLRR 594
D+D R + HT H+L L EVLG+ GS + EK R+D ++ + ++ +
Sbjct: 1 DWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKYK-EQ 59
Query: 595 IESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPE 654
I S+ N+ + +V + R I
Sbjct: 60 IISLFNKYVDEGGEVKIW--------------------WEGDRRYTQIR----------- 88
Query: 655 NKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAV 698
CGGTH+ + +E L I +G +R+
Sbjct: 89 -----DFEVIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLEMW 127
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 151
Score = 96.1 bits (238), Expect = 9e-24
Identities = 30/152 (19%), Positives = 52/152 (34%), Gaps = 15/152 (9%)
Query: 546 NHTCTHMLNFALREVLGDHVDQKGS-VVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIK 604
H+ H++ A+ +VLG S V K + E +R IE + NE++K
Sbjct: 8 THSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVK 67
Query: 605 AELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAE 664
+ E EA+ + G P+ VR++ + + +
Sbjct: 68 ENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDW-------------NVN 114
Query: 665 LCGGTHLSNTREAEAFALLSEEG-IAKGIRRI 695
C H T E + +KG+ I
Sbjct: 115 ACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEI 146
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Staphylococcus aureus
[TaxId: 1280]}
Length = 179
Score = 66.3 bits (161), Expect = 5e-13
Identities = 32/168 (19%), Positives = 63/168 (37%), Gaps = 20/168 (11%)
Query: 538 DRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIES 597
L H+ H++ A++ + G+ G V+ +DF + + + +IE
Sbjct: 4 SEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVI-EGGFYYDFDIDQNISSDDFEQIEK 62
Query: 598 IVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKE 657
+ + + + + K + EA + +F D ++ I ED +
Sbjct: 63 TMKQIVNENMKIERKVVSRDEA------KELFSN---DEYKLELIDAIPED---ENVTLY 110
Query: 658 WLSISAELCGGTHLSNTREAEAFALLSEEGIA-------KGIRRITAV 698
+LC G H+ +T + + F LLS G K ++RI
Sbjct: 111 SQGDFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGT 158
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Escherichia coli [TaxId:
562]}
Length = 162
Score = 63.3 bits (153), Expect = 3e-12
Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 12/152 (7%)
Query: 536 DYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRI 595
D + ++I H+C H+L A+++ L H V+ +D + + E + +
Sbjct: 2 DEEGLEII--RHSCAHLLGHAIKQ-LWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEAL 58
Query: 596 ESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPEN 655
E ++E + DV K+ + EA+ R +V + D
Sbjct: 59 EKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVS------ILDENIAHDDKPGLYF 112
Query: 656 KEWLSISAELCGGTHLSNTREAEAFALLSEEG 687
E ++C G H+ N R F L+ G
Sbjct: 113 HEE---YVDMCRGPHVPNMRFCHHFKLMKTAG 141
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 87
Score = 60.6 bits (147), Expect = 4e-12
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 459 EFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQ-IYGGFVIHIGS 517
E V+ + I+L + FY GGQ D G I G V +V G V H+
Sbjct: 17 EAKGRVLEIRDNAILLDQTIFYPTGGGQPHDRGTING----VEVLDVYKDEEGNVWHVV- 71
Query: 518 LTEGAGRFSVGEEVICKV 535
+ +F VG+EV K+
Sbjct: 72 --KEPEKFKVGDEVELKI 87
>d1zupa1 c.55.3.11 (A:1-301) Hypothetical protein TM1739 {Thermotoga
maritima [TaxId: 2336]}
Length = 301
Score = 33.7 bits (77), Expect = 0.087
Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 11/127 (8%)
Query: 592 LRRIESIVNEQIKAELDV-FSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLL 650
+ R E I +E + D F +E+ E D + V R+ +
Sbjct: 5 IERAERIESELEEHVGDQTFVEESRFLEEDEQREGE------ILDQIIFVDGKRRSFVRI 58
Query: 651 ADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAA 710
E I AELC G + RE L S + R+ + + +E
Sbjct: 59 TTDEGIT--GIFAELCVGA-VIWDREGGTKTLFSPDKPPV-KERVLGFSQSFQEEGYEEV 114
Query: 711 CSLEKEV 717
+ +V
Sbjct: 115 GGILFKV 121
>d2dk5a1 a.4.5.85 (A:8-85) DNA-directed RNA polymerase III subunit
RPC6, RPO3F {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 30.4 bits (69), Expect = 0.16
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 716 EVDDASKIEG-SLLEKTVASL--KSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAE 772
+ +A K++G EK V + + G D+R K L ++ K K +
Sbjct: 1 DSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWS-----RDVRYKSNLPLTEINKILKNLES 55
Query: 773 ENLQKAVK 780
+ L KAVK
Sbjct: 56 KKLIKAVK 63
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 30.1 bits (67), Expect = 1.2
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 266 GSCPG-NEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVN 305
G PG N +R ++R+A+ +G EV G + GL+
Sbjct: 11 GDSPGMNA----AIRSVVRKAIYHGVEVYGVYHG-YAGLIA 46
>d2gtvx1 a.130.1.3 (X:1-93) Chorismate mutase-like protein MJ0246
{Methanococcus jannaschii [TaxId: 2190]}
Length = 93
Score = 27.9 bits (62), Expect = 1.5
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 750 ADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAA 809
A+IR KI + N++ KA+ AE+ + + +A + AE G P E
Sbjct: 6 AEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGIPINDPERE-----KY 60
Query: 810 VREAVLKVIEQKGMP 824
+ + + K+ ++ +
Sbjct: 61 IYDRIRKLCKEHNVD 75
>d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 96
Score = 27.9 bits (62), Expect = 1.8
Identities = 9/55 (16%), Positives = 21/55 (38%)
Query: 556 ALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVF 610
R+++ D+ V+P +L P D + + + V E ++ +
Sbjct: 27 QWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLL 81
>d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase
pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]}
Length = 326
Score = 28.5 bits (63), Expect = 3.5
Identities = 5/37 (13%), Positives = 14/37 (37%)
Query: 291 EVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIRE 327
++ Q GF + + + + + V + R+
Sbjct: 280 KIPSMQVGFIDAICLQLYEALTHVSEDCFPLLDGCRK 316
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
{Escherichia coli [TaxId: 562]}
Length = 320
Score = 28.5 bits (63), Expect = 3.6
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 266 GSCPG-NEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVN 305
G PG N +R ++R A+ G EV+ DG + GL
Sbjct: 12 GDAPGMNA----AIRGVVRSALTEGLEVMGIYDG-YLGLYE 47
>d1kb2a_ g.39.1.2 (A:) Vitamin D3 receptor, VDR, DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 26.9 bits (59), Expect = 3.9
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 2 NQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHN 38
+ F G + +AC ++C+ G
Sbjct: 35 ALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKE 71
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific
3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 324
Score = 28.1 bits (62), Expect = 4.8
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 287 RYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQ 320
R AQ GF ++ + + + +FP +++
Sbjct: 263 RDKVTKATAQIGFIKFVLIPMFETVTKLFPMVEE 296
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.395
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,357,745
Number of extensions: 163536
Number of successful extensions: 517
Number of sequences better than 10.0: 1
Number of HSP's gapped: 504
Number of HSP's successfully gapped: 21
Length of query: 904
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 810
Effective length of database: 1,116,976
Effective search space: 904750560
Effective search space used: 904750560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)