Query 002584
Match_columns 904
No_of_seqs 462 out of 2718
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 02:57:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02727 NAD kinase 100.0 2E-226 5E-231 1953.3 64.8 873 7-901 1-889 (986)
2 KOG2178 Predicted sugar kinase 100.0 5.6E-48 1.2E-52 420.6 19.7 236 661-901 65-312 (409)
3 PLN02935 Bifunctional NADH kin 100.0 8.7E-47 1.9E-51 426.1 22.6 222 675-901 179-406 (508)
4 PRK14077 pnk inorganic polypho 100.0 5.1E-45 1.1E-49 392.0 23.2 196 689-902 9-204 (287)
5 PRK03372 ppnK inorganic polyph 100.0 2.5E-44 5.5E-49 389.5 23.7 205 688-901 3-211 (306)
6 PRK04539 ppnK inorganic polyph 100.0 3E-44 6.5E-49 387.5 21.6 201 687-901 2-207 (296)
7 PRK01911 ppnK inorganic polyph 100.0 1.8E-43 3.9E-48 380.9 23.2 199 692-901 2-202 (292)
8 PRK02649 ppnK inorganic polyph 100.0 1.9E-43 4.2E-48 382.6 22.7 202 691-901 2-207 (305)
9 PRK03378 ppnK inorganic polyph 100.0 6.7E-43 1.4E-47 376.5 23.9 200 688-902 3-203 (292)
10 PRK02155 ppnK NAD(+)/NADH kina 100.0 1.1E-42 2.4E-47 374.6 22.6 201 687-902 2-203 (291)
11 PRK14076 pnk inorganic polypho 100.0 9.1E-42 2E-46 396.2 23.8 202 684-901 284-487 (569)
12 PRK01231 ppnK inorganic polyph 100.0 1.3E-41 2.9E-46 366.9 23.3 198 690-902 4-202 (295)
13 PRK02231 ppnK inorganic polyph 100.0 1.4E-41 3.1E-46 362.9 20.5 180 707-901 2-182 (272)
14 PRK01185 ppnK inorganic polyph 100.0 3.9E-41 8.4E-46 359.5 22.7 182 692-901 2-184 (271)
15 PRK04885 ppnK inorganic polyph 100.0 3.9E-41 8.5E-46 358.5 20.5 171 692-901 2-174 (265)
16 COG0061 nadF NAD kinase [Coenz 100.0 2.8E-40 6.1E-45 354.2 23.4 192 691-902 1-193 (281)
17 PRK03501 ppnK inorganic polyph 100.0 1.9E-40 4E-45 353.0 21.5 172 691-902 3-176 (264)
18 PRK03708 ppnK inorganic polyph 100.0 1.3E-39 2.7E-44 348.8 23.1 188 692-901 2-191 (277)
19 PRK14075 pnk inorganic polypho 100.0 9.9E-39 2.2E-43 338.4 21.8 171 692-901 2-172 (256)
20 PRK02645 ppnK inorganic polyph 100.0 8.1E-39 1.7E-43 346.7 21.3 194 690-901 3-205 (305)
21 PF01513 NAD_kinase: ATP-NAD k 100.0 5.6E-39 1.2E-43 343.9 18.4 203 692-901 1-217 (285)
22 PRK00561 ppnK inorganic polyph 100.0 1.3E-37 2.7E-42 330.4 20.7 161 692-901 2-163 (259)
23 PLN02929 NADH kinase 100.0 1.5E-35 3.2E-40 319.9 19.7 166 704-900 33-224 (301)
24 PRK04761 ppnK inorganic polyph 100.0 1.3E-35 2.8E-40 313.0 16.4 135 755-902 25-161 (246)
25 PF13350 Y_phosphatase3: Tyros 99.9 9.6E-24 2.1E-28 208.9 11.5 132 247-387 1-164 (164)
26 PF03162 Y_phosphatase2: Tyros 99.8 1.2E-20 2.6E-25 188.9 12.0 122 245-385 4-129 (164)
27 TIGR01244 conserved hypothetic 99.8 1.1E-19 2.5E-24 175.9 14.4 114 266-383 6-121 (135)
28 PF04273 DUF442: Putative phos 99.7 1.1E-17 2.5E-22 157.8 10.7 101 266-370 6-108 (110)
29 KOG4180 Predicted kinase [Gene 99.7 3.1E-17 6.7E-22 176.4 6.3 136 753-893 103-277 (395)
30 COG3453 Uncharacterized protei 99.6 2.9E-15 6.2E-20 142.4 12.4 111 267-381 8-120 (130)
31 COG2365 Protein tyrosine/serin 99.5 6.1E-15 1.3E-19 156.7 6.8 168 266-434 52-247 (249)
32 KOG1572 Predicted protein tyro 99.5 8.8E-14 1.9E-18 145.5 11.7 126 244-388 56-189 (249)
33 smart00195 DSPc Dual specifici 99.5 2.9E-13 6.4E-18 129.3 12.1 107 267-384 6-116 (138)
34 cd00127 DSPc Dual specificity 99.4 6.8E-13 1.5E-17 125.8 11.6 114 266-388 6-123 (139)
35 PTZ00393 protein tyrosine phos 99.3 2.3E-11 5.1E-16 128.6 12.5 105 277-389 106-212 (241)
36 PTZ00242 protein tyrosine phos 99.2 6.2E-11 1.3E-15 119.3 13.1 113 268-388 17-140 (166)
37 PF00782 DSPc: Dual specificit 99.2 2.2E-11 4.8E-16 115.3 7.1 107 269-384 1-111 (133)
38 PF05706 CDKN3: Cyclin-depende 99.2 3.5E-11 7.5E-16 121.2 8.5 103 277-380 61-168 (168)
39 PRK12361 hypothetical protein; 99.1 2.7E-10 5.8E-15 133.1 13.0 120 267-393 100-223 (547)
40 KOG1720 Protein tyrosine phosp 98.8 2.6E-08 5.7E-13 103.4 9.5 94 280-381 87-182 (225)
41 PF14566 PTPlike_phytase: Inos 98.3 1.4E-06 3.1E-11 86.4 7.1 61 308-368 84-145 (149)
42 TIGR00147 lipid kinase, YegS/R 98.3 2E-06 4.2E-11 92.8 8.2 109 691-812 2-118 (293)
43 KOG1719 Dual specificity phosp 98.2 6.1E-06 1.3E-10 82.8 9.3 99 278-381 42-144 (183)
44 KOG2836 Protein tyrosine phosp 98.2 1.1E-05 2.4E-10 79.3 10.2 103 271-381 21-131 (173)
45 COG2453 CDC14 Predicted protei 98.1 8E-06 1.7E-10 83.2 9.2 77 312-388 68-148 (180)
46 KOG1716 Dual specificity phosp 98.0 3.7E-05 7.9E-10 83.8 10.4 116 266-390 79-199 (285)
47 smart00404 PTPc_motif Protein 97.8 3.3E-05 7.3E-10 69.1 5.6 53 319-371 5-63 (105)
48 smart00012 PTPc_DSPc Protein t 97.8 3.3E-05 7.3E-10 69.1 5.6 53 319-371 5-63 (105)
49 KOG1718 Dual specificity phosp 97.7 0.00018 3.8E-09 73.4 10.3 102 267-379 22-127 (198)
50 KOG1717 Dual specificity phosp 97.7 0.00012 2.6E-09 79.0 9.1 106 266-380 176-285 (343)
51 cd00047 PTPc Protein tyrosine 96.9 0.0016 3.4E-08 67.9 6.5 50 333-382 148-207 (231)
52 smart00194 PTPc Protein tyrosi 96.7 0.0043 9.3E-08 65.9 7.4 39 331-369 174-215 (258)
53 PLN02727 NAD kinase 96.6 0.0035 7.7E-08 77.4 6.7 198 400-610 391-614 (986)
54 PRK13057 putative lipid kinase 96.5 0.0053 1.2E-07 66.6 7.1 60 753-812 48-109 (287)
55 PRK00861 putative lipid kinase 96.4 0.018 3.8E-07 62.9 10.2 107 691-812 3-116 (300)
56 PF13348 Y_phosphatase3C: Tyro 96.3 0.00074 1.6E-08 58.4 -0.7 40 399-438 28-67 (68)
57 COG5599 PTP2 Protein tyrosine 96.2 0.0035 7.7E-08 68.0 3.5 41 328-368 197-239 (302)
58 PRK11914 diacylglycerol kinase 96.2 0.032 7E-07 61.1 10.7 109 690-812 8-124 (306)
59 KOG2283 Clathrin coat dissocia 96.0 0.0076 1.7E-07 69.9 5.4 98 280-387 44-149 (434)
60 PHA02740 protein tyrosine phos 95.9 0.015 3.2E-07 64.4 6.5 23 346-368 220-242 (298)
61 PHA02742 protein tyrosine phos 95.7 0.016 3.5E-07 64.0 5.9 22 347-368 229-250 (303)
62 PHA02747 protein tyrosine phos 95.3 0.019 4.1E-07 63.8 4.8 21 348-368 230-250 (312)
63 PRK13054 lipid kinase; Reviewe 95.3 0.054 1.2E-06 59.3 8.2 107 690-812 3-119 (300)
64 PRK15375 pathogenicity island 95.3 0.053 1.1E-06 63.9 8.4 53 331-384 439-505 (535)
65 COG3199 Predicted inorganic po 95.2 0.03 6.5E-07 63.0 5.9 60 755-815 100-161 (355)
66 PRK13059 putative lipid kinase 95.1 0.14 3E-06 56.2 10.6 108 691-812 2-117 (295)
67 PHA02746 protein tyrosine phos 95.0 0.042 9.1E-07 61.4 6.2 21 348-368 248-268 (323)
68 PF00102 Y_phosphatase: Protei 94.9 0.027 5.9E-07 57.7 4.2 39 332-370 152-193 (235)
69 PRK13337 putative lipid kinase 94.8 0.23 5E-06 54.6 11.5 106 691-812 2-118 (304)
70 PHA02738 hypothetical protein; 94.8 0.036 7.8E-07 61.9 5.0 22 347-368 227-248 (320)
71 PLN02160 thiosulfate sulfurtra 94.6 0.16 3.5E-06 49.9 8.4 87 275-375 17-107 (136)
72 PRK13055 putative lipid kinase 94.4 0.27 5.8E-06 55.0 10.9 106 691-812 3-121 (334)
73 PF00781 DAGK_cat: Diacylglyce 94.3 0.077 1.7E-06 51.0 5.6 36 756-791 55-94 (130)
74 TIGR03702 lip_kinase_YegS lipi 94.2 0.21 4.5E-06 54.6 9.2 59 754-812 51-115 (293)
75 PRK12361 hypothetical protein; 94.0 0.19 4.2E-06 59.7 9.2 108 690-812 242-360 (547)
76 cd01523 RHOD_Lact_B Member of 93.3 0.29 6.3E-06 44.5 7.1 86 275-375 1-87 (100)
77 PLN02958 diacylglycerol kinase 93.3 0.49 1.1E-05 55.9 10.7 113 684-812 105-238 (481)
78 KOG2386 mRNA capping enzyme, g 92.9 0.11 2.4E-06 59.6 4.6 102 275-382 48-160 (393)
79 KOG0793 Protein tyrosine phosp 92.9 0.82 1.8E-05 55.6 11.6 46 334-379 911-963 (1004)
80 KOG0792 Protein tyrosine phosp 92.7 0.15 3.4E-06 63.8 5.6 35 332-366 1045-1082(1144)
81 cd01518 RHOD_YceA Member of th 92.6 0.5 1.1E-05 43.1 7.6 85 274-375 3-87 (101)
82 cd01533 4RHOD_Repeat_2 Member 92.5 0.51 1.1E-05 43.7 7.7 81 274-375 11-92 (109)
83 COG5350 Predicted protein tyro 92.5 0.32 6.9E-06 49.6 6.6 80 284-367 29-113 (172)
84 PLN02204 diacylglycerol kinase 92.1 0.74 1.6E-05 55.7 10.2 72 688-773 157-236 (601)
85 KOG0791 Protein tyrosine phosp 92.0 0.23 5.1E-06 56.4 5.5 46 325-370 261-310 (374)
86 cd01448 TST_Repeat_1 Thiosulfa 91.9 0.91 2E-05 42.7 8.6 96 275-375 2-106 (122)
87 KOG0789 Protein tyrosine phosp 91.9 0.23 5.1E-06 56.0 5.5 23 346-368 298-320 (415)
88 COG1597 LCB5 Sphingosine kinas 91.4 1.2 2.7E-05 49.4 10.3 105 691-812 3-119 (301)
89 smart00046 DAGKc Diacylglycero 91.3 0.24 5.1E-06 47.8 4.1 35 755-789 49-88 (124)
90 PRK05320 rhodanese superfamily 90.3 1 2.2E-05 49.2 8.2 174 181-374 13-200 (257)
91 PRK01415 hypothetical protein; 89.3 3.2 7E-05 45.3 11.1 171 181-374 15-196 (247)
92 cd01528 RHOD_2 Member of the R 88.9 2 4.4E-05 39.1 8.0 81 274-375 1-84 (101)
93 cd01519 RHOD_HSP67B2 Member of 88.9 1.5 3.3E-05 39.9 7.1 87 276-375 2-92 (106)
94 COG0607 PspE Rhodanese-related 88.0 1.7 3.6E-05 39.5 6.8 77 277-374 9-86 (110)
95 KOG0790 Protein tyrosine phosp 87.6 0.55 1.2E-05 54.6 4.0 32 332-363 431-467 (600)
96 PF00581 Rhodanese: Rhodanese- 86.0 4.8 0.0001 36.3 8.6 80 276-367 1-86 (113)
97 cd01534 4RHOD_Repeat_3 Member 85.8 3.8 8.3E-05 37.0 7.8 79 276-375 2-82 (95)
98 cd01522 RHOD_1 Member of the R 85.3 5.4 0.00012 37.8 8.9 87 275-375 1-90 (117)
99 cd01444 GlpE_ST GlpE sulfurtra 84.8 3.7 8.1E-05 36.6 7.2 80 275-375 2-82 (96)
100 KOG4228 Protein tyrosine phosp 83.9 0.62 1.4E-05 59.1 2.4 32 333-364 713-747 (1087)
101 cd01527 RHOD_YgaP Member of th 83.4 2.4 5.1E-05 38.4 5.4 74 274-370 3-76 (99)
102 cd01520 RHOD_YbbB Member of th 83.1 4.7 0.0001 38.8 7.6 86 275-374 1-112 (128)
103 cd01449 TST_Repeat_2 Thiosulfa 82.8 2.5 5.3E-05 39.4 5.4 95 276-375 2-104 (118)
104 KOG1530 Rhodanese-related sulf 82.3 3.5 7.6E-05 41.3 6.3 82 276-370 26-111 (136)
105 PRK14071 6-phosphofructokinase 82.0 1.9 4.1E-05 49.4 5.1 54 755-810 107-170 (360)
106 cd01526 RHOD_ThiF Member of th 82.0 3.6 7.7E-05 39.2 6.2 86 274-374 9-97 (122)
107 cd01524 RHOD_Pyr_redox Member 82.0 5.6 0.00012 35.5 7.2 75 276-374 2-76 (90)
108 KOG4435 Predicted lipid kinase 81.5 4 8.6E-05 47.4 7.3 87 752-849 113-212 (535)
109 PRK05600 thiamine biosynthesis 81.5 3.3 7E-05 47.5 6.7 85 274-374 272-357 (370)
110 KOG4471 Phosphatidylinositol 3 80.3 2.2 4.8E-05 51.3 4.9 26 345-370 372-397 (717)
111 TIGR02482 PFKA_ATP 6-phosphofr 79.4 1.6 3.4E-05 48.9 3.3 54 754-809 90-153 (301)
112 PF06602 Myotub-related: Myotu 79.3 2.5 5.3E-05 48.2 4.8 26 345-370 229-254 (353)
113 cd01530 Cdc25 Cdc25 phosphatas 78.2 6.9 0.00015 37.6 6.9 25 345-370 66-91 (121)
114 PRK00162 glpE thiosulfate sulf 77.9 7.3 0.00016 36.0 6.7 78 275-375 7-84 (108)
115 PRK00142 putative rhodanese-re 77.6 7 0.00015 44.0 7.6 87 271-374 110-196 (314)
116 TIGR02483 PFK_mixed phosphofru 77.1 2.9 6.3E-05 47.2 4.6 54 754-810 93-156 (324)
117 TIGR02981 phageshock_pspE phag 76.9 8 0.00017 36.4 6.7 68 286-374 16-83 (101)
118 PRK06555 pyrophosphate--fructo 76.5 2.3 5E-05 49.5 3.6 55 754-810 111-180 (403)
119 cd00763 Bacterial_PFK Phosphof 75.9 2.6 5.6E-05 47.5 3.7 53 754-809 91-153 (317)
120 PRK10287 thiosulfate:cyanide s 75.3 6.6 0.00014 37.2 5.7 66 288-374 20-85 (104)
121 PRK14072 6-phosphofructokinase 74.3 2.7 5.8E-05 49.1 3.4 53 754-808 102-169 (416)
122 PTZ00286 6-phospho-1-fructokin 74.1 2.8 6.1E-05 49.5 3.6 54 754-809 175-243 (459)
123 cd08194 Fe-ADH6 Iron-containin 73.0 7 0.00015 44.5 6.3 88 690-787 23-130 (375)
124 PRK06830 diphosphate--fructose 72.4 3.3 7.1E-05 48.8 3.5 134 672-809 63-239 (443)
125 COG0205 PfkA 6-phosphofructoki 72.1 3.4 7.3E-05 47.3 3.5 54 754-809 93-156 (347)
126 PLN02564 6-phosphofructokinase 70.3 3.9 8.5E-05 48.7 3.6 54 754-809 175-243 (484)
127 cd01525 RHOD_Kc Member of the 69.5 13 0.00027 33.9 6.1 87 275-375 1-91 (105)
128 TIGR00566 trpG_papA glutamine 69.3 8.3 0.00018 39.9 5.3 34 755-789 43-82 (188)
129 PRK11784 tRNA 2-selenouridine 68.8 19 0.00041 41.2 8.5 27 346-374 87-114 (345)
130 cd08193 HVD 5-hydroxyvalerate 68.4 8.3 0.00018 43.9 5.6 76 690-775 26-102 (376)
131 PRK07765 para-aminobenzoate sy 68.0 10 0.00022 40.2 5.8 79 692-789 2-86 (214)
132 cd08176 LPO Lactadehyde:propan 67.9 8.9 0.00019 43.7 5.7 75 691-775 29-104 (377)
133 PLN02884 6-phosphofructokinase 67.7 4 8.6E-05 47.7 2.9 124 683-809 46-210 (411)
134 cd08169 DHQ-like Dehydroquinat 67.3 12 0.00026 42.5 6.5 92 690-787 23-117 (344)
135 TIGR03865 PQQ_CXXCW PQQ-depend 67.3 36 0.00079 34.6 9.4 99 274-375 37-143 (162)
136 PF00365 PFK: Phosphofructokin 67.2 2.3 5E-05 47.1 0.8 54 754-809 91-154 (282)
137 cd01529 4RHOD_Repeats Member o 67.0 9.7 0.00021 34.4 4.7 29 345-375 54-82 (96)
138 cd01447 Polysulfide_ST Polysul 66.7 22 0.00048 31.9 7.0 28 345-374 59-86 (103)
139 PRK03202 6-phosphofructokinase 66.6 5.3 0.00011 45.1 3.5 53 754-809 92-154 (320)
140 PRK06774 para-aminobenzoate sy 66.2 9.2 0.0002 39.4 4.9 74 693-789 2-82 (191)
141 COG1454 EutG Alcohol dehydroge 66.0 8.1 0.00017 44.8 4.9 76 690-775 29-105 (377)
142 PRK09860 putative alcohol dehy 66.0 8.9 0.00019 44.0 5.2 77 690-776 31-108 (383)
143 PRK06895 putative anthranilate 65.4 17 0.00036 37.5 6.6 75 691-789 2-82 (190)
144 cd01521 RHOD_PspE2 Member of t 64.7 14 0.00029 34.5 5.3 80 273-374 8-91 (110)
145 cd00363 PFK Phosphofructokinas 63.8 5 0.00011 45.6 2.6 55 754-810 91-160 (338)
146 KOG4228 Protein tyrosine phosp 63.7 7 0.00015 50.2 4.1 94 112-208 679-798 (1087)
147 cd08181 PPD-like 1,3-propanedi 62.1 14 0.00031 41.8 5.9 75 691-775 26-102 (357)
148 cd08175 G1PDH Glycerol-1-phosp 61.7 16 0.00035 41.1 6.2 88 691-787 24-112 (348)
149 KOG1089 Myotubularin-related p 61.3 13 0.00028 45.1 5.5 29 345-373 342-370 (573)
150 cd08185 Fe-ADH1 Iron-containin 61.1 18 0.00039 41.3 6.5 76 691-775 26-102 (380)
151 TIGR01357 aroB 3-dehydroquinat 60.3 13 0.00029 41.7 5.2 91 690-787 20-115 (344)
152 PRK05670 anthranilate synthase 59.8 11 0.00024 38.8 4.1 66 706-789 11-82 (189)
153 TIGR02477 PFKA_PPi diphosphate 59.7 8.2 0.00018 46.6 3.6 34 754-787 160-198 (539)
154 PRK07411 hypothetical protein; 59.6 18 0.0004 41.8 6.3 84 274-375 283-368 (390)
155 PF04179 Init_tRNA_PT: Initiat 59.6 29 0.00063 41.3 7.9 76 286-370 317-400 (451)
156 cd07766 DHQ_Fe-ADH Dehydroquin 59.5 14 0.0003 41.0 5.2 86 690-787 23-112 (332)
157 COG2897 SseA Rhodanese-related 58.8 35 0.00075 38.3 8.0 91 275-371 158-257 (285)
158 cd08186 Fe-ADH8 Iron-containin 58.6 20 0.00043 41.1 6.3 76 690-775 26-103 (383)
159 cd01443 Cdc25_Acr2p Cdc25 enzy 58.5 39 0.00085 31.6 7.3 75 275-365 4-84 (113)
160 PRK07085 diphosphate--fructose 58.4 9 0.00019 46.5 3.6 33 754-786 163-200 (555)
161 cd08179 NADPH_BDH NADPH-depend 58.4 17 0.00036 41.5 5.6 75 691-775 24-100 (375)
162 PLN02251 pyrophosphate-depende 58.2 9 0.0002 46.6 3.6 34 754-787 189-227 (568)
163 cd08178 AAD_C C-terminal alcoh 58.1 12 0.00027 43.0 4.6 76 691-775 22-97 (398)
164 PRK00002 aroB 3-dehydroquinate 57.8 23 0.00049 40.3 6.5 91 690-787 31-126 (358)
165 cd08551 Fe-ADH iron-containing 57.3 14 0.00031 41.8 4.9 76 690-775 23-99 (370)
166 TIGR02638 lactal_redase lactal 57.1 16 0.00036 41.7 5.3 75 690-774 29-104 (379)
167 smart00450 RHOD Rhodanese Homo 56.7 46 0.00099 28.8 7.0 29 345-375 54-82 (100)
168 PLN03028 pyrophosphate--fructo 56.6 9.9 0.00022 46.6 3.6 33 754-786 172-209 (610)
169 PRK10624 L-1,2-propanediol oxi 56.6 18 0.0004 41.4 5.6 74 691-774 31-105 (382)
170 PLN02834 3-dehydroquinate synt 56.4 17 0.00036 42.8 5.3 92 690-788 100-198 (433)
171 cd08170 GlyDH Glycerol dehydro 56.3 25 0.00055 39.6 6.6 86 690-787 22-109 (351)
172 cd08192 Fe-ADH7 Iron-containin 56.3 12 0.00027 42.4 4.2 76 690-775 24-100 (370)
173 cd08187 BDH Butanol dehydrogen 56.2 19 0.00042 41.2 5.7 89 690-787 28-136 (382)
174 cd08195 DHQS Dehydroquinate sy 55.7 23 0.0005 40.0 6.1 91 690-787 24-119 (345)
175 PF04343 DUF488: Protein of un 55.7 18 0.00038 34.8 4.5 47 280-326 6-54 (122)
176 PTZ00468 phosphofructokinase f 55.6 9.5 0.00021 50.1 3.4 34 754-787 799-842 (1328)
177 cd08173 Gro1PDH Sn-glycerol-1- 55.5 27 0.00059 39.2 6.7 84 691-787 26-110 (339)
178 PLN02723 3-mercaptopyruvate su 55.1 30 0.00065 38.8 6.9 43 330-374 252-294 (320)
179 cd08171 GlyDH-like2 Glycerol d 55.0 24 0.00052 39.8 6.1 96 691-796 23-121 (345)
180 cd00765 Pyrophosphate_PFK Phos 54.6 11 0.00024 45.6 3.6 34 754-787 165-203 (550)
181 PF02126 PTE: Phosphotriestera 54.6 21 0.00046 40.2 5.5 100 278-380 42-187 (308)
182 PRK11493 sseA 3-mercaptopyruva 54.5 51 0.0011 36.1 8.3 82 275-358 7-98 (281)
183 cd01531 Acr2p Eukaryotic arsen 54.0 43 0.00094 31.2 6.7 78 275-368 4-83 (113)
184 TIGR02478 6PF1K_euk 6-phosphof 54.0 11 0.00024 47.3 3.5 54 754-809 477-546 (745)
185 cd00764 Eukaryotic_PFK Phospho 53.8 11 0.00024 47.2 3.6 54 754-809 477-546 (762)
186 PRK01269 tRNA s(4)U8 sulfurtra 53.5 24 0.00051 42.0 6.0 46 317-374 429-474 (482)
187 cd01743 GATase1_Anthranilate_S 53.4 9.9 0.00022 38.7 2.6 36 754-789 41-81 (184)
188 cd08177 MAR Maleylacetate redu 53.3 19 0.00041 40.5 4.9 85 690-787 23-109 (337)
189 PRK08762 molybdopterin biosynt 53.3 36 0.00079 38.9 7.3 78 275-374 5-82 (376)
190 PRK07878 molybdopterin biosynt 52.3 38 0.00082 39.2 7.3 81 274-375 288-369 (392)
191 PRK08857 para-aminobenzoate sy 51.6 28 0.00061 36.0 5.5 34 755-789 43-82 (193)
192 cd08189 Fe-ADH5 Iron-containin 51.4 29 0.00062 39.7 6.1 76 690-775 26-102 (374)
193 PRK15454 ethanol dehydrogenase 51.0 18 0.00039 41.9 4.4 77 690-775 49-125 (395)
194 PRK06490 glutamine amidotransf 50.7 28 0.00061 37.6 5.6 79 691-789 8-96 (239)
195 cd08180 PDD 1,3-propanediol de 50.1 28 0.00061 39.0 5.7 87 690-787 22-117 (332)
196 COG1819 Glycosyl transferases, 49.8 75 0.0016 37.0 9.2 101 704-811 251-368 (406)
197 PRK09423 gldA glycerol dehydro 49.5 29 0.00062 39.5 5.7 85 691-787 30-116 (366)
198 KOG1115 Ceramide kinase [Lipid 49.4 17 0.00037 42.5 3.8 73 688-773 156-235 (516)
199 PRK07053 glutamine amidotransf 49.3 44 0.00095 36.0 6.7 80 690-789 2-93 (234)
200 PRK15378 inositol phosphate ph 49.1 11 0.00024 44.8 2.2 19 351-369 460-478 (564)
201 cd08182 HEPD Hydroxyethylphosp 49.0 30 0.00066 39.2 5.8 73 690-775 23-96 (367)
202 PF05925 IpgD: Enterobacterial 48.8 5.8 0.00012 47.4 0.0 23 346-368 452-474 (559)
203 PRK06203 aroB 3-dehydroquinate 48.7 36 0.00078 39.5 6.4 33 754-787 110-145 (389)
204 cd08549 G1PDH_related Glycerol 48.5 32 0.00069 38.8 5.7 86 691-787 25-112 (332)
205 KOG1116 Sphingosine kinase, in 47.5 38 0.00082 41.3 6.4 86 688-788 177-276 (579)
206 cd08183 Fe-ADH2 Iron-containin 47.3 34 0.00073 39.1 5.8 71 691-775 23-94 (374)
207 PRK13566 anthranilate synthase 47.0 40 0.00087 42.3 6.8 77 690-789 526-608 (720)
208 CHL00101 trpG anthranilate syn 46.5 16 0.00036 37.7 2.9 35 755-789 43-82 (190)
209 PRK09629 bifunctional thiosulf 46.4 70 0.0015 39.4 8.6 44 330-375 206-249 (610)
210 cd08191 HHD 6-hydroxyhexanoate 45.5 35 0.00076 39.2 5.6 76 691-775 23-98 (386)
211 TIGR03405 Phn_Fe-ADH phosphona 45.1 25 0.00054 39.9 4.3 76 691-775 24-99 (355)
212 PRK09875 putative hydrolase; P 44.8 1E+02 0.0022 34.6 8.9 43 276-320 36-78 (292)
213 cd03174 DRE_TIM_metallolyase D 44.6 1.3E+02 0.0029 31.9 9.4 80 278-358 119-201 (265)
214 cd08190 HOT Hydroxyacid-oxoaci 44.5 27 0.00059 40.6 4.6 75 691-775 24-99 (414)
215 TIGR03167 tRNA_sel_U_synt tRNA 44.5 43 0.00093 37.8 6.0 24 349-374 76-100 (311)
216 cd08199 EEVS 2-epi-5-epi-valio 44.3 46 0.001 38.0 6.3 93 688-787 24-122 (354)
217 TIGR01815 TrpE-clade3 anthrani 44.1 40 0.00087 42.3 6.1 78 690-789 516-598 (717)
218 TIGR02478 6PF1K_euk 6-phosphof 44.0 18 0.00039 45.4 3.2 55 754-810 93-179 (745)
219 cd08172 GlyDH-like1 Glycerol d 43.4 35 0.00076 38.5 5.1 83 691-787 24-108 (347)
220 cd01532 4RHOD_Repeat_1 Member 42.2 45 0.00099 30.0 4.7 15 346-361 49-63 (92)
221 PLN02335 anthranilate synthase 42.2 54 0.0012 35.0 6.1 77 690-789 18-101 (222)
222 PRK07649 para-aminobenzoate/an 42.1 42 0.00092 35.1 5.1 74 693-789 2-82 (195)
223 cd08197 DOIS 2-deoxy-scyllo-in 41.5 65 0.0014 36.9 6.9 87 690-787 23-118 (355)
224 PTZ00287 6-phosphofructokinase 40.8 21 0.00045 47.4 3.1 54 754-809 927-997 (1419)
225 PRK00843 egsA NAD(P)-dependent 40.5 66 0.0014 36.5 6.7 83 691-787 35-119 (350)
226 PTZ00468 phosphofructokinase f 40.4 24 0.00052 46.6 3.5 34 754-787 195-233 (1328)
227 PF06283 ThuA: Trehalose utili 39.4 99 0.0021 32.4 7.4 99 692-814 1-110 (217)
228 cd00764 Eukaryotic_PFK Phospho 39.2 30 0.00064 43.7 4.0 54 754-809 96-181 (762)
229 PRK11574 oxidative-stress-resi 37.8 1E+02 0.0023 31.5 7.1 38 754-791 65-111 (196)
230 cd00158 RHOD Rhodanese Homolog 37.6 67 0.0014 27.5 4.9 27 345-373 48-74 (89)
231 TIGR00337 PyrG CTP synthase. C 36.7 72 0.0016 38.8 6.5 83 691-788 290-381 (525)
232 cd03132 GATase1_catalase Type 36.6 1.4E+02 0.003 28.8 7.5 94 691-789 2-105 (142)
233 PRK13805 bifunctional acetalde 35.8 60 0.0013 41.4 6.0 77 690-775 480-558 (862)
234 COG1054 Predicted sulfurtransf 35.6 1.3E+02 0.0027 34.4 7.7 81 270-370 110-194 (308)
235 cd07943 DRE_TIM_HOA 4-hydroxy- 35.2 2.5E+02 0.0053 30.6 9.8 81 277-358 115-196 (263)
236 PF07899 Frigida: Frigida-like 34.9 45 0.00098 37.4 4.2 103 94-227 148-250 (290)
237 PF00465 Fe-ADH: Iron-containi 34.8 27 0.00059 39.5 2.6 77 691-776 22-98 (366)
238 PRK11493 sseA 3-mercaptopyruva 33.4 58 0.0013 35.7 4.7 43 331-375 215-257 (281)
239 cd08188 Fe-ADH4 Iron-containin 33.0 51 0.0011 37.7 4.4 76 690-775 28-104 (377)
240 cd07939 DRE_TIM_NifV Streptomy 32.7 3.2E+02 0.007 29.6 10.2 78 280-358 116-193 (259)
241 cd07944 DRE_TIM_HOA_like 4-hyd 30.9 3E+02 0.0066 30.3 9.7 79 279-358 114-194 (266)
242 PF08357 SEFIR: SEFIR domain; 30.7 60 0.0013 31.7 3.9 77 691-775 1-78 (150)
243 cd08196 DHQS-like1 Dehydroquin 30.3 90 0.0019 35.8 5.7 77 691-776 20-96 (346)
244 cd01744 GATase1_CPSase Small c 30.2 43 0.00092 34.2 2.9 35 755-789 39-79 (178)
245 TIGR03217 4OH_2_O_val_ald 4-hy 30.2 3.3E+02 0.0072 31.1 10.1 82 276-358 116-199 (333)
246 PF00117 GATase: Glutamine ami 30.2 20 0.00044 36.3 0.5 37 753-789 40-82 (192)
247 PF13528 Glyco_trans_1_3: Glyc 29.6 1.2E+02 0.0026 32.8 6.4 34 750-787 245-278 (318)
248 PRK07567 glutamine amidotransf 29.5 40 0.00086 36.5 2.6 36 754-789 50-103 (242)
249 PRK10310 PTS system galactitol 27.8 4.8E+02 0.01 24.3 9.1 90 691-811 3-94 (94)
250 PRK09393 ftrA transcriptional 27.0 2.3E+02 0.0051 31.4 8.1 46 753-798 73-130 (322)
251 PRK06186 hypothetical protein; 26.0 45 0.00097 36.3 2.2 36 753-788 51-91 (229)
252 TIGR01426 MGT glycosyltransfer 25.9 64 0.0014 36.3 3.6 33 751-787 287-319 (392)
253 PRK11858 aksA trans-homoaconit 25.6 4.5E+02 0.0098 30.4 10.3 79 279-358 121-199 (378)
254 PRK08195 4-hyroxy-2-oxovalerat 25.3 4.3E+02 0.0094 30.2 10.0 82 276-358 117-200 (337)
255 cd03784 GT1_Gtf_like This fami 25.0 96 0.0021 34.8 4.7 58 749-810 298-371 (401)
256 cd08198 DHQS-like2 Dehydroquin 24.9 1.4E+02 0.003 34.8 6.0 34 754-788 98-134 (369)
257 cd01535 4RHOD_Repeat_4 Member 24.8 3E+02 0.0066 27.4 7.7 22 346-368 48-69 (145)
258 COG0693 ThiJ Putative intracel 24.7 2.4E+02 0.0052 28.6 7.2 40 753-792 64-112 (188)
259 PRK08250 glutamine amidotransf 24.7 62 0.0013 34.9 3.0 36 754-789 44-94 (235)
260 PRK12564 carbamoyl phosphate s 24.4 94 0.002 36.0 4.5 74 691-789 178-258 (360)
261 PRK14042 pyruvate carboxylase 24.1 7E+02 0.015 31.1 12.0 91 267-358 110-208 (596)
262 PF04101 Glyco_tran_28_C: Glyc 24.1 33 0.00072 33.9 0.8 33 750-786 67-99 (167)
263 PRK09065 glutamine amidotransf 24.1 59 0.0013 35.0 2.7 36 754-789 53-98 (237)
264 COG1570 XseA Exonuclease VII, 23.8 2.7E+02 0.0059 33.3 8.1 96 687-801 132-243 (440)
265 cd03128 GAT_1 Type 1 glutamine 23.0 83 0.0018 25.4 2.9 38 753-790 44-90 (92)
266 KOG0782 Predicted diacylglycer 23.0 1.8E+02 0.0039 35.8 6.5 67 758-829 419-496 (1004)
267 PRK11366 puuD gamma-glutamyl-g 23.0 94 0.002 33.9 4.0 67 708-789 29-117 (254)
268 cd00861 ProRS_anticodon_short 22.7 1.9E+02 0.0042 25.6 5.4 62 690-765 1-64 (94)
269 cd07940 DRE_TIM_IPMS 2-isoprop 22.5 5.6E+02 0.012 27.9 9.9 78 280-358 120-200 (268)
270 PRK09389 (R)-citramalate synth 22.2 5.3E+02 0.011 31.1 10.3 78 280-358 120-197 (488)
271 COG2012 RPB5 DNA-directed RNA 21.8 21 0.00046 33.0 -1.0 18 77-94 36-63 (80)
272 TIGR02660 nifV_homocitr homoci 21.6 6.1E+02 0.013 29.2 10.3 78 280-358 119-196 (365)
273 PRK10586 putative oxidoreducta 21.5 94 0.002 35.7 3.8 33 754-787 85-118 (362)
274 PRK13527 glutamine amidotransf 21.4 62 0.0013 33.6 2.2 35 755-789 43-87 (200)
275 TIGR02090 LEU1_arch isopropylm 21.3 6.8E+02 0.015 28.8 10.6 80 278-358 116-195 (363)
276 cd01742 GATase1_GMP_Synthase T 21.2 51 0.0011 33.2 1.5 36 754-789 40-80 (181)
277 TIGR02990 ectoine_eutA ectoine 21.0 3.3E+02 0.0072 29.7 7.7 95 277-376 109-209 (239)
278 TIGR00888 guaA_Nterm GMP synth 20.7 61 0.0013 33.2 1.9 34 756-789 42-80 (188)
No 1
>PLN02727 NAD kinase
Probab=100.00 E-value=2.5e-226 Score=1953.30 Aligned_cols=873 Identities=71% Similarity=1.069 Sum_probs=820.0
Q ss_pred cccCCCCccccccc---cccccCCceeEeeeeeEeeccchhhhhccceEEEEeeeccccccccCccccccccCCCCCCCc
Q 002584 7 MQRLSSPATGILCS---SKLHNNETKLWGFGFRFKLQRRNESVRRRVKLVVSAELSKSFSLNLGLDSQVIQSNDPSQLPW 83 (904)
Q Consensus 7 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (904)
|.|+ +|+|||++. ++++++++||++|||||. +|+...||++||||+|+||++||++||||||+||+||+|||||
T Consensus 1 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (986)
T PLN02727 1 MARL-SPVTGILSSCLCSVKLNSDGKLLGFGFGFW--QRKEPLKRRLKFVVSAELSKSFSSNLGLDSQNFQSRDLSQLPW 77 (986)
T ss_pred CCCC-CCccccccccccceeeccccceeccchhhh--hccHHHHhhhhheehhhhhhccccccCcccccccccchhcCcc
Confidence 5788 999999744 999999999999999984 3444459999999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHhhhhhHHHHHHHHHHHHHhhcCCCccceeeeeccCCCCCCCcccceeehhhhHHHhhhcCCccccccc
Q 002584 84 IGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGECTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSGR 163 (904)
Q Consensus 84 ~~~~~~~~~~~~~~cr~~~~a~~l~~a~~~~~~~~~~~ec~v~~~~~~~~~~~led~ii~~~~~~~~~ln~gr~~v~s~~ 163 (904)
|||||||||||||||||||+|||||+|||++||||+||||+|+|||++||||.|||||+++||||+++||+||.||+|||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r 157 (986)
T PLN02727 78 IGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGECPVSYDFTSEEKPLLEDKIVSVLGCMLSLLNKGREEVLSGR 157 (986)
T ss_pred ccCCCccHHHHhhhhhHHHHHHHHHHHHHHHhcCcccccccccccCCccccchhhhhHHHHHHHHHHHHhcchhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccccCCCchhhhhhhhhhhhHHHHHHHhccCCCCcchhhHHHHHHHHHhhhccCCCCCCCCCCCCc
Q 002584 164 SSIMNAYRVADISMTEDQLPPLAIFRSEMKRCCESMHIALENYLTPEDVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIHT 243 (904)
Q Consensus 164 ~~~~~nf~~~~~~~~~~~~p~l~l~r~~l~~~~~~l~~~l~~yl~p~~~~~l~v~rkLqr~~n~~~d~g~pR~~gyp~~t 243 (904)
+++|++|+++|++.||+++||||+||.+||+|||+||++|++||+|+++||++||||||||+|+|||.||||.+||||++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~ce~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~pr~~~~p~~~ 237 (986)
T PLN02727 158 SSIMSSFRGSEVSAMEDKLPPLAIFRGEMKRCCESLHVALENYLTPDDDRSLDVWRKLQRLKNVCYDAGFPRSDDYPCHT 237 (986)
T ss_pred hhhhhhcccchhhhhhccCChHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHhhhhhcCCCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeecCCccccccCCCcccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEe
Q 002584 244 LFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIP 323 (904)
Q Consensus 244 ~i~Nfr~V~~~~~~~~~~~~~~e~~LYRSGqpT~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIP 323 (904)
.|+||.+|+++++++|...++.+..+|||+||+++++++|+++|||||||||++.++...+.++++++++..|++|+|+|
T Consensus 238 ~~~n~~~v~~~~~~~~~~~~~~~~~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIP 317 (986)
T PLN02727 238 LFANWNPVYLSTSKEDIDSKESEAAFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIP 317 (986)
T ss_pred cccccceeeecccccccccccceeeEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEee
Confidence 99999999999999999999999999999999999999999999999999999973345555568888999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCcCCCChHHHHHHHHHHHcCC-CHHHHHHhhcccccccccchHHHHhhhc
Q 002584 324 VEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMAR-CASQISGQTITSNDVLLKDSTRTRKLKA 402 (904)
Q Consensus 324 V~d~~~Ps~e~I~afleil~ds~~~PVLVHCtAGKDRTGaLvaLlr~~lGV-~~edIiaDYLlsn~~l~~~~e~~~~~~m 402 (904)
|.+...|+.+++++|++++++..++|||+||++|.||||+|+++|++++-. ....+ ...+.
T Consensus 318 Vs~~~apt~EqVe~fa~~l~~slpkPVLvHCKSGarRAGamvA~yl~~~~~~~~~~~------------------~~~~~ 379 (986)
T PLN02727 318 VEVRTAPSAEQVEKFASLVSDSSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSAERLL------------------GQNSV 379 (986)
T ss_pred cCCCCCCCHHHHHHHHHHHHhhcCCCEEEECCCCCchHHHHHHHHHHHHcccchhhh------------------ccccc
Confidence 988899999999999999966779999999999999999999999997533 22222 11233
Q ss_pred cchhhhhhhhccchhhhhhhhcccccccccccccchhccccCCCcccc-cccccccccchhhccccCccccccccccCCc
Q 002584 403 SAGKFLLEEKYETVKENQDEIQTKNGVFGFGLSVDMDKRNQSNGAYKG-LSSVEGVESAKEVDTAVGSLGTTFSKETDPF 481 (904)
Q Consensus 403 ~a~~~~l~~~~G~~e~~~~~~~~~~~~~ie~ir~nl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (904)
+..-..+.+++|++++.+++.++.++.+.+...+-.+++.+++++++| +.++|++...+++. +++++++||++|+|||
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 458 (986)
T PLN02727 380 VNGNGKLDQETGSLQETNDKDSSSNGSESGESCSIKDETGRSNLEAYNSLPSDQSTQQGEMVG-TGVESQSNFNMESDPL 458 (986)
T ss_pred cccCcccccccCccccccccccccCcccccccccccccccccccccccccccccccccccccc-ccccccceeeeecCcc
Confidence 344566779999999999999999999999999999999999999999 99999999999998 8889999999999999
Q ss_pred cccCCCCcccchHHHhhhhhccccCCCccccccccccccCC----------ccccCCCCccccccccccccccCCCCCCC
Q 002584 482 KAQVPPSNFVSKKEMSRFFRSKTTSPPRYFNYQSKRMDVLP----------SEIVSSGPVSGVAETRYSQWSLSGNNLSP 551 (904)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (904)
|||+|||||||||||++|||+||++|++|+|||+|+|++|| ++|++.+++++++|+++||++++++++++
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~sng~~s~kn~s~ 538 (986)
T PLN02727 459 KAQVPPCDVFSKKEMSKFFRSKKIYPPTYLNYRRKGFEKLPVPQFTGVTQGSKIDDTDSISRLVETGRSNGLVSEKNSSP 538 (986)
T ss_pred cccCCCcccccHHHHHHHHhhcccCCcccccchhcccccCCccccccccchhhccCccchhhhhhccCCCccccccccCc
Confidence 99999999999999999999999999999999999999998 77999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCccccCCcCCccccCCCcccccccccccccccccccccccccccccccCCCCCCCCCCCCC-Cc
Q 002584 552 NHQNLPAGSEKSSDNNGYVSAGCSTNGFDRGDRSSMTEANLLTSVTKNLDEQVISSSVRDVQRSNGKPSNSGDDDLG-PI 630 (904)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 630 (904)
+.|++.+.+.|.+||++++|+|++++.++...+.++++.+.+++|+++++.++++++.++++.+||+.++..+||++ .|
T Consensus 539 d~qss~~~~~k~sNGss~~s~~s~s~~Ss~~~~~~~~ng~~stsv~~nl~~~v~s~s~res~s~Ng~a~vgssd~~~~~~ 618 (986)
T PLN02727 539 KYQSSEFDNGKSSNGSSFASDGSLSVASSITNGNPSNNGASSSTVSDNLERSVASVSVRESQRSNGKASLGSSDDELGAI 618 (986)
T ss_pred cccchhhccccCCCCccccccCcccccccccCCccccCCCccccccCCCcccccccccccccccCCccccccccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred ccccccccccceeeecccccceeEeeecCcceeeeeecCCCccccCCchhhHhcccccCCCEEEEEecCChhHHHHHHHH
Q 002584 631 VGNMCASSTGVVRVQSRKKAEMFLVRTDGFSCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEV 710 (904)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~r~d~~sc~r~~~~~s~~~~~~ps~~~~~l~w~~~pk~VlIv~K~~~~~~~~a~el 710 (904)
|||||||+|||||||+|||++||++||||||||||.|++++++|+|||+||++|+|.+||++|+||+|+++++.+.+.+|
T Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~c~~~~~~~~~~~~~~~s~~~~~l~W~~p~rtVgIV~K~~~ea~~~~~eL 698 (986)
T PLN02727 619 EGNMCASATGVVRVQSRRKAEMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSTPKTVLLLKKLGQELMEEAKEV 698 (986)
T ss_pred cccccccccccEEeeccCCcceEEEEecCcceeehhhccccccccCcchhceeeecCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred HHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHHHHHHhcCCCCCcEEEEeCCCC
Q 002584 711 ASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSL 790 (904)
Q Consensus 711 ~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~GsL 790 (904)
++||.+++|++|++|++.++.+...+.+++...|+..+.+++.+++|+||+||||||||+|+|.+....+||||||+|+|
T Consensus 699 ~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINlGrL 778 (986)
T PLN02727 699 ASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVVSFNLGSL 778 (986)
T ss_pred HHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence 99998767999999999888765556654444555555556777899999999999999999999999999999999999
Q ss_pred cccCCCCcccHHHHHHHHHcCCCCCCceeeeEEEEEEEEEEeCCeecCCccccceeeEEEecCCCCceEEEEEEECCEEe
Q 002584 791 GFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLI 870 (904)
Q Consensus 791 GFLt~~~~ed~~~~L~~il~G~y~i~g~~i~~R~rL~~~V~~~G~~~~~~~~~ALNEVvI~Rg~~~~l~~i~v~idg~~i 870 (904)
|||++++++++++.|+++++|+|.++++++++|++|+|+|.++|+.+..+.++|||||+|.|+..++|+.+++||||+++
T Consensus 779 GFLTdi~~ee~~~~L~~Il~G~y~i~~~~ie~R~~L~~~V~r~g~~i~~~~~~ALNEVVI~Rg~~~~mi~ieVyIDg~~l 858 (986)
T PLN02727 779 GFLTSHYFEDFRQDLRQVIHGNNTLDGVYITLRMRLRCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLI 858 (986)
T ss_pred cccccCCHHHHHHHHHHHHcCCccccccccceeeEEEEEEecCCcccccccceEEEEEEEecCCCccEEEEEEEECCEEe
Confidence 99999999999999999999999876778899999999999888765433567999999999999999999999999999
Q ss_pred EEEEeCeEEECCCcchHHHhhhcCCcccccc
Q 002584 871 TKVQGDGVIVATPTGSTAYSTAAGGSMVICL 901 (904)
Q Consensus 871 ~~~~gDGVIVSTPTGSTAYslSAGGPIV~~~ 901 (904)
++|+||||||||||||||||||||||||||-
T Consensus 859 ~tyrgDGLIVSTPTGSTAYSLSAGGPIVhP~ 889 (986)
T PLN02727 859 TKVQGDGVIVATPTGSTAYSTAAGGSMVHPN 889 (986)
T ss_pred EEeecceEEEECCCchHHhHhhcCCceeCCC
Confidence 9999999999999999999999999999984
No 2
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-48 Score=420.61 Aligned_cols=236 Identities=42% Similarity=0.691 Sum_probs=194.3
Q ss_pred ceeeeeecCCCccccCCchhhHhcccccCCCEEEEEecCChhHHHHHHHHHHHHhcCC-CeEEEEcCChhhhh--hc---
Q 002584 661 SCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQE-KMNILVEPDVHDIF--AR--- 734 (904)
Q Consensus 661 sc~r~~~~~s~~~~~~ps~~~~~l~w~~~pk~VlIv~K~~~~~~~~a~el~~~L~~~~-gi~V~ve~~v~~~l--~~--- 734 (904)
||+++....+...-.-+....|.+.|-+||++|+|.||.+.++.+..+|+++||.... .+.|+++.++++.. +.
T Consensus 65 sn~~~~~~~~~~~~~~~~~~s~~l~~~~p~~~~lv~K~~d~s~~~~~~Elv~~ll~~~~~i~V~v~~~~~~~~~f~~~~~ 144 (409)
T KOG2178|consen 65 SNSRELMSNVAAVRSIQKSLSQRLIWLKPPKNLLVTKKNDESVLEKFVELVEWLLQTFPNITVYVEDKVAKDKQFSAGNL 144 (409)
T ss_pred ccchhhhhhhhhhhhccchhhhchhccCCCceEEEEcCCcHHHHHHHHHHHHHHHhhCCCeEEEechhhhhhhhhcccch
Confidence 6666533322222223344567899999999999999888889999999999997654 69999999887632 11
Q ss_pred CCCCc---cceeeeccCcccccCCCcEEEEEcCCchHHHHHHhcCCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHcC
Q 002584 735 IPGFG---FVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYG 811 (904)
Q Consensus 735 ~~~~~---~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~il~G 811 (904)
.+.+. .+..+......++.+.+|+|||||||||+|+|+.+|++..|||++|++|+|||||+|+++++++.|.++++|
T Consensus 145 ~e~~~~~~~i~y~~~e~~~d~~~~~D~iItLGGDGTvL~aS~LFq~~VPPV~sFslGslGFLtpf~f~~f~~~l~~v~~~ 224 (409)
T KOG2178|consen 145 DESFGVKERILYWTTEGCDDLPNRFDLIITLGGDGTVLYASSLFQRSVPPVLSFSLGSLGFLTPFPFANFQEQLARVLNG 224 (409)
T ss_pred hhcccchhceEeeccccccccccceeEEEEecCCccEEEehhhhcCCCCCeEEeecCCccccccccHHHHHHHHHHHhcC
Confidence 00111 122222333577889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeEEEEEEEEEEeCCeecC---CccccceeeEEEecCCCCceEEEEEEECCEEeEEEEeCeEEECCCcchHH
Q 002584 812 NNTLDGVYITLRMRLCCEIFRNGKAMP---GKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTA 888 (904)
Q Consensus 812 ~y~i~g~~i~~R~rL~~~V~~~G~~~~---~~~~~ALNEVvI~Rg~~~~l~~i~v~idg~~i~~~~gDGVIVSTPTGSTA 888 (904)
+ .++.+||||+|+++|.++... ...+++||||+|+||.+++|+.+++|+||+++|+++||||||||||||||
T Consensus 225 ~-----~~v~lR~RL~C~i~rk~~~~~~~~~~~~~vLNEvvIdRGpsP~ls~l~ly~d~~~iT~vq~DGliVaTPTGSTA 299 (409)
T KOG2178|consen 225 R-----AAVNLRMRLRCSLKRKDLAEKTHAASSHYVLNEVVIDRGPSPFLSNLDLYVDDKLITKVQGDGLIVATPTGSTA 299 (409)
T ss_pred c-----ceEeeeeeEEEEEEEecccccccccceEEEeeeEEEccCCCchhcceeEEecCcEEEEEecceEEEecCCchhh
Confidence 8 457999999999998655421 22688999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCcccccc
Q 002584 889 YSTAAGGSMVICL 901 (904)
Q Consensus 889 YslSAGGPIV~~~ 901 (904)
||+|||||||||.
T Consensus 300 YS~sAGGSlvhP~ 312 (409)
T KOG2178|consen 300 YSASAGGSLVHPS 312 (409)
T ss_pred hHhhcCCceecCC
Confidence 9999999999984
No 3
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=100.00 E-value=8.7e-47 Score=426.08 Aligned_cols=222 Identities=43% Similarity=0.719 Sum_probs=183.8
Q ss_pred cCCchhhHhcccccCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcC-CCCccceeeec-cCccc
Q 002584 675 THPSTQQQMLMWKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARI-PGFGFVQTFYL-QDTSD 751 (904)
Q Consensus 675 ~~ps~~~~~l~w~~~pk~VlIv~K~~~-~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~-~~~~~~~~~~~-~~~~d 751 (904)
+.+|++|..|.|.++|++|+||.|+.. .+.+.+.++++||.+++++.|+++++....+... +..+....+.. ....+
T Consensus 179 ~~~~~~~~~l~w~~~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 258 (508)
T PLN02935 179 AERSSKQISLKWESDPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILL 258 (508)
T ss_pred ccCCCceEEeeecCCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhh
Confidence 456888889999999999999999886 5778899999999745789999988765433110 00111110000 11122
Q ss_pred ccCCCcEEEEEcCCchHHHHHHhcCCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHcCCCCCCceeeeEEEEEEEEEE
Q 002584 752 LHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIF 831 (904)
Q Consensus 752 ~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~il~G~y~i~g~~i~~R~rL~~~V~ 831 (904)
+..++|+||+||||||||+|+|.+....+||||||+|+||||++++++++++.|+++++|+|. ++.|+||+|.|.
T Consensus 259 l~~~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN~G~LGFLt~i~~~e~~~~Le~il~G~y~-----Ie~R~~L~~~v~ 333 (508)
T PLN02935 259 LHTKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSMGSLGFMTPFHSEQYRDCLDAILKGPIS-----ITLRHRLQCHII 333 (508)
T ss_pred cccCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCCCcceecccCHHHHHHHHHHHHcCCce-----EEEEeEEEEEEE
Confidence 446799999999999999999999999999999999999999999999999999999999865 799999999998
Q ss_pred eCCeecC---CccccceeeEEEecCCCCceEEEEEEECCEEeEEEEeCeEEECCCcchHHHhhhcCCcccccc
Q 002584 832 RNGKAMP---GKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICL 901 (904)
Q Consensus 832 ~~G~~~~---~~~~~ALNEVvI~Rg~~~~l~~i~v~idg~~i~~~~gDGVIVSTPTGSTAYslSAGGPIV~~~ 901 (904)
++++... ...++|||||+|.|+..++++.+++||||+++++|+||||||||||||||||||||||||||-
T Consensus 334 ~~~~~~~~~~~~~~~ALNEvvI~rg~~~~~i~l~V~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~ 406 (508)
T PLN02935 334 RDAAKNEYETEEPILVLNEVTIDRGISSFLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQ 406 (508)
T ss_pred cCCceecccccccceeccceEEecCCCceEEEEEEEECCEeEEEEECCcEEEecCccHHHHHHhcCCcccCCC
Confidence 7764321 123579999999999999999999999999999999999999999999999999999999985
No 4
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=5.1e-45 Score=392.00 Aligned_cols=196 Identities=26% Similarity=0.442 Sum_probs=169.9
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchH
Q 002584 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (904)
Q Consensus 689 ~pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTl 768 (904)
..++|+|+.|+.+++.+.++++++||.+ ++++++++++.+..+. .+++ ...++..++|+||++||||||
T Consensus 9 ~~~~i~ii~~~~~~~~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~Dlvi~iGGDGT~ 77 (287)
T PRK14077 9 NIKKIGLVTRPNVSLDKEILKLQKILSI-YKVEILLEKESAEILD-LPGY---------GLDELFKISDFLISLGGDGTL 77 (287)
T ss_pred cCCEEEEEeCCcHHHHHHHHHHHHHHHH-CCCEEEEecchhhhhc-cccc---------chhhcccCCCEEEEECCCHHH
Confidence 3678999999888778889999999965 6999999887655432 1111 112344578999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHcCCCCCCceeeeEEEEEEEEEEeCCeecCCccccceeeE
Q 002584 769 LHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEV 848 (904)
Q Consensus 769 L~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~il~G~y~i~g~~i~~R~rL~~~V~~~G~~~~~~~~~ALNEV 848 (904)
|+|+|.+...++||+|||+|+||||+++++++++++|+++++|+|. ++.|++|++++.++++.. ...+||||+
T Consensus 78 L~aa~~~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~y~-----ie~r~~L~~~v~~~~~~~--~~~~AlNev 150 (287)
T PRK14077 78 ISLCRKAAEYDKFVLGIHAGHLGFLTDITVDEAEKFFQAFFQGEFE-----IEKPYMLSVFLEKKQGKI--LEKLAFNDV 150 (287)
T ss_pred HHHHHHhcCCCCcEEEEeCCCcccCCcCCHHHHHHHHHHHHcCCCe-----EEEEEEEEEEEEeCCceE--EEEEEeeee
Confidence 9999999999999999999999999999999999999999999965 689999999998766432 234699999
Q ss_pred EEecCCCCceEEEEEEECCEEeEEEEeCeEEECCCcchHHHhhhcCCccccccC
Q 002584 849 VVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICLP 902 (904)
Q Consensus 849 vI~Rg~~~~l~~i~v~idg~~i~~~~gDGVIVSTPTGSTAYslSAGGPIV~~~~ 902 (904)
+|.|+..++++++++|+||+++++|+||||||||||||||||||||||||||--
T Consensus 151 vi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVSTPTGSTAYslSAGGPIv~P~~ 204 (287)
T PRK14077 151 VISKNNQASMAHIEAFLNEKYFNEYFGDGVIVATPAGSTAYNMSANGPIIYPLS 204 (287)
T ss_pred eeccCCCccEEEEEEEECCEEEEEEEcCEEEEeCCCchhHhHhhcCCcccCCCC
Confidence 999999999999999999999999999999999999999999999999999753
No 5
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=2.5e-44 Score=389.51 Aligned_cols=205 Identities=29% Similarity=0.370 Sum_probs=170.3
Q ss_pred cCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhc-CCCCc--cceeeeccCcccccCCCcEEEEEc
Q 002584 688 TTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFAR-IPGFG--FVQTFYLQDTSDLHERVDFVACLG 763 (904)
Q Consensus 688 ~~pk~VlIv~K~~~-~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~-~~~~~--~~~~~~~~~~~d~~~~~DlVIvLG 763 (904)
+++++|+|+.|+.. ++.+.+.++++||.+ +|++|++++..+..+.. .+..+ .....+. ...++.+++|+||+||
T Consensus 3 ~~~~~I~iv~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~vi~lG 80 (306)
T PRK03372 3 TASRRVLLVAHTGRDEATEAARRVAKQLGD-AGIGVRVLDAEAVDLGATHPAPDDFRAMEVVD-ADPDAADGCELVLVLG 80 (306)
T ss_pred CCccEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEeechhhhhccccccccccccccccc-chhhcccCCCEEEEEc
Confidence 46789999999875 577889999999965 69999988765433211 11000 0000000 0123445789999999
Q ss_pred CCchHHHHHHhcCCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHcCCCCCCceeeeEEEEEEEEEEeCCeecCCcccc
Q 002584 764 GDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFD 843 (904)
Q Consensus 764 GDGTlL~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~il~G~y~i~g~~i~~R~rL~~~V~~~G~~~~~~~~~ 843 (904)
||||||+|+|.+...++||+|||+|+||||+++++++++++|+++++|+|. +++|++|++++.++|+... ..+
T Consensus 81 GDGT~L~aar~~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y~-----i~~R~~L~~~v~~~g~~~~--~~~ 153 (306)
T PRK03372 81 GDGTILRAAELARAADVPVLGVNLGHVGFLAEAEAEDLDEAVERVVDRDYR-----VEERMTLDVTVRVGGEIVW--RGW 153 (306)
T ss_pred CCHHHHHHHHHhccCCCcEEEEecCCCceeccCCHHHHHHHHHHHHcCCce-----EEEeeeEEEEEEECCEEEe--eee
Confidence 999999999999999999999999999999999999999999999999965 6999999999988887542 357
Q ss_pred ceeeEEEecCCCCceEEEEEEECCEEeEEEEeCeEEECCCcchHHHhhhcCCcccccc
Q 002584 844 VLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICL 901 (904)
Q Consensus 844 ALNEVvI~Rg~~~~l~~i~v~idg~~i~~~~gDGVIVSTPTGSTAYslSAGGPIV~~~ 901 (904)
||||++|.|+..+++++++++|||+++++|+||||||||||||||||||||||||||-
T Consensus 154 ALNdvvi~r~~~~~~~~~~v~idg~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~ 211 (306)
T PRK03372 154 ALNEASLEKADREGMLEVVLEVDGRPVSSFGCDGVLVSTPTGSTAYAFSAGGPVVWPD 211 (306)
T ss_pred EEEeEEeecCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHHhhcCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999984
No 6
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=3e-44 Score=387.52 Aligned_cols=201 Identities=28% Similarity=0.474 Sum_probs=169.1
Q ss_pred ccCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhh---hhh-cCCCCccceeeeccCcccccCCCcEEEE
Q 002584 687 KTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHD---IFA-RIPGFGFVQTFYLQDTSDLHERVDFVAC 761 (904)
Q Consensus 687 ~~~pk~VlIv~K~~~-~~~~~a~el~~~L~~~~gi~V~ve~~v~~---~l~-~~~~~~~~~~~~~~~~~d~~~~~DlVIv 761 (904)
+++.++|+|+.|++. ++.+.+.++++||.+ +|++|++++.... .+. ..++. ...+..++...+|+||+
T Consensus 2 ~~~~~~i~ii~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~D~vi~ 74 (296)
T PRK04539 2 NSPFHNIGIVTRPNTPDIQDTAHTLITFLKQ-HGFTVYLDEVGIKEGCIYTQDTVGC------HIVNKTELGQYCDLVAV 74 (296)
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecccccccchhccccccc------cccchhhcCcCCCEEEE
Confidence 456789999999876 577889999999965 6999999764221 100 00010 00112344557999999
Q ss_pred EcCCchHHHHHHhcCCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHcCCCCCCceeeeEEEEEEEEEEeCCeecCCcc
Q 002584 762 LGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKV 841 (904)
Q Consensus 762 LGGDGTlL~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~il~G~y~i~g~~i~~R~rL~~~V~~~G~~~~~~~ 841 (904)
+|||||||+|+|.+...++||+|||+|+||||++++++++++.|+++++|+|. +++|++|++++.++|+.. ..
T Consensus 75 lGGDGT~L~aa~~~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~~~-----~~~r~~l~~~v~~~~~~~--~~ 147 (296)
T PRK04539 75 LGGDGTFLSVAREIAPRAVPIIGINQGHLGFLTQIPREYMTDKLLPVLEGKYL-----AEERILIEAALIREGKTA--ER 147 (296)
T ss_pred ECCcHHHHHHHHHhcccCCCEEEEecCCCeEeeccCHHHHHHHHHHHHcCCce-----EEEeeeEEEEEEECCeee--ee
Confidence 99999999999999988999999999999999999999999999999999865 699999999998887654 23
Q ss_pred ccceeeEEEecCCCCceEEEEEEECCEEeEEEEeCeEEECCCcchHHHhhhcCCcccccc
Q 002584 842 FDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICL 901 (904)
Q Consensus 842 ~~ALNEVvI~Rg~~~~l~~i~v~idg~~i~~~~gDGVIVSTPTGSTAYslSAGGPIV~~~ 901 (904)
++||||++|.|+..++++++++++||+++++|+||||||||||||||||||||||||||-
T Consensus 148 ~~ALNdvvi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~ 207 (296)
T PRK04539 148 ALALNDAVLSRGGAGQMIEFEVFVNREFVYTQRSDGLIVSTPTGSTAYSLAAGGPIMQAG 207 (296)
T ss_pred eeeehhhhhccCCcCceEEEEEEECCEEEEEEecCeEEEECCCcHHHHHhhCCCceeCCC
Confidence 579999999999999999999999999999999999999999999999999999999985
No 7
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.8e-43 Score=380.89 Aligned_cols=199 Identities=25% Similarity=0.404 Sum_probs=163.0
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeecc-CcccccCCCcEEEEEcCCchHH
Q 002584 692 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQ-DTSDLHERVDFVACLGGDGVIL 769 (904)
Q Consensus 692 ~VlIv~K~~~-~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~-~~~d~~~~~DlVIvLGGDGTlL 769 (904)
+|+|+.|+.. ++.+.++++++||.+ +|++|+++++.+..+.....+. ...... +..++.+.+|+||+||||||||
T Consensus 2 ~igii~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~dlvi~lGGDGT~L 78 (292)
T PRK01911 2 KIAIFGQTYQESASPYIQELFDELEE-RGAEVLIEEKFLDFLKQDLKFH--PSYDTFSDNEELDGSADMVISIGGDGTFL 78 (292)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhhccccccc--cccccccchhhcccCCCEEEEECCcHHHH
Confidence 4889988775 677889999999964 6999999887554332100000 000000 1134455789999999999999
Q ss_pred HHHHhcCCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHcCCCCCCceeeeEEEEEEEEEEeCCeecCCccccceeeEE
Q 002584 770 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (904)
Q Consensus 770 ~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~il~G~y~i~g~~i~~R~rL~~~V~~~G~~~~~~~~~ALNEVv 849 (904)
+|+|.+...++||+|||+|+||||++++++++++.|+++++|+|. ++.|++|++++ +++... ..++|||||+
T Consensus 79 ~aa~~~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~~~-----i~~r~~L~~~~--~~~~~~-~~~~alNdvv 150 (292)
T PRK01911 79 RTATYVGNSNIPILGINTGRLGFLATVSKEEIEETIDELLNGDYT-----IEERSLLQLES--NPKLFG-ELNFALNEIA 150 (292)
T ss_pred HHHHHhcCCCCCEEEEecCCCCcccccCHHHHHHHHHHHHcCCce-----EEEEeeEEEEE--cCCcce-eeeEEEEEEE
Confidence 999999988999999999999999999999999999999999965 69999999985 333211 1357999999
Q ss_pred EecCCCCceEEEEEEECCEEeEEEEeCeEEECCCcchHHHhhhcCCcccccc
Q 002584 850 VDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICL 901 (904)
Q Consensus 850 I~Rg~~~~l~~i~v~idg~~i~~~~gDGVIVSTPTGSTAYslSAGGPIV~~~ 901 (904)
|.|+..++++.+++++||+++++|+||||||||||||||||||||||||||-
T Consensus 151 i~r~~~~~~i~~~v~idg~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~ 202 (292)
T PRK01911 151 ILKRDTSSMITVHTYLNGEYLNSYWADGLIVATPTGSTGYSLSCGGPIIVPD 202 (292)
T ss_pred EecCCCCcEEEEEEEECCEEEEEEeeceeEECCCCcHHHHHhhCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999974
No 8
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.9e-43 Score=382.61 Aligned_cols=202 Identities=26% Similarity=0.349 Sum_probs=167.2
Q ss_pred CEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCc--cceeeecc-CcccccCCCcEEEEEcCCc
Q 002584 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFG--FVQTFYLQ-DTSDLHERVDFVACLGGDG 766 (904)
Q Consensus 691 k~VlIv~K~~~-~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~--~~~~~~~~-~~~d~~~~~DlVIvLGGDG 766 (904)
++|+|+.++.. ++.+.+.++.+||.+ .|++++++++.++.+. .+... ....-+.+ +..++.+.+|+||++||||
T Consensus 2 ~~igiv~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDG 79 (305)
T PRK02649 2 PKAGIIYNDGKPLAVRTAEELQDKLEA-AGWEVVRASSSGGILG-YANPDQPVCHTGIDQLVPPGFDSSMKFAIVLGGDG 79 (305)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcC-ccccccccccccccccChhhcccCcCEEEEEeCcH
Confidence 57999999876 577889999999964 6999999876544331 11100 00000000 1134445789999999999
Q ss_pred hHHHHHHhcCCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHcCCCCCCceeeeEEEEEEEEEEeCCeecCCcccccee
Q 002584 767 VILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLN 846 (904)
Q Consensus 767 TlL~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~il~G~y~i~g~~i~~R~rL~~~V~~~G~~~~~~~~~ALN 846 (904)
|||+|+|.+...++||+|||+|+||||+++++++++++|+++++|+|. ++.|++|+|++.++++.. ...+|||
T Consensus 80 TlL~aar~~~~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g~y~-----ie~r~~L~~~v~~~~~~~--~~~~ALN 152 (305)
T PRK02649 80 TVLSAARQLAPCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQYT-----IEERTMLTVSVMRGDQLR--WEALSLN 152 (305)
T ss_pred HHHHHHHHhcCCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcCCcE-----EEEeeeEEEEEEECCcce--eeeeeee
Confidence 999999999999999999999999999999999999999999999954 799999999998777543 1357999
Q ss_pred eEEEecCCCCceEEEEEEECCEEeEEEEeCeEEECCCcchHHHhhhcCCcccccc
Q 002584 847 EVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICL 901 (904)
Q Consensus 847 EVvI~Rg~~~~l~~i~v~idg~~i~~~~gDGVIVSTPTGSTAYslSAGGPIV~~~ 901 (904)
|++|.|+..++|+++++++||+++++|+||||||||||||||||||||||||||-
T Consensus 153 evvi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~ 207 (305)
T PRK02649 153 EMVLHREPLTSMCHFEIAIGRHAPVDIAADGVILSTPTGSTAYSLSAGGPVITPD 207 (305)
T ss_pred eeeeecCCCccEEEEEEEECCEEEEEEecCeEEEeCCCcHHHHHhhCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999984
No 9
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=6.7e-43 Score=376.49 Aligned_cols=200 Identities=26% Similarity=0.423 Sum_probs=169.7
Q ss_pred cCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCc
Q 002584 688 TTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (904)
Q Consensus 688 ~~pk~VlIv~K~~~-~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDG 766 (904)
+..++|+|+.|+++ .+.+.+.++++||.+ +|++++++++.+..+. .+.. . ..+..++.+++|+||++||||
T Consensus 3 ~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~-~~~~---~---~~~~~~~~~~~d~vi~lGGDG 74 (292)
T PRK03378 3 NHFKCIGIVGHPRHPTALTTHEMLYHWLTS-KGYEVIVEQQIAHELQ-LKNV---K---TGTLAEIGQQADLAIVVGGDG 74 (292)
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcC-cccc---c---ccchhhcCCCCCEEEEECCcH
Confidence 34688999999876 577889999999965 6999999886544321 1100 0 011134455789999999999
Q ss_pred hHHHHHHhcCCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHcCCCCCCceeeeEEEEEEEEEEeCCeecCCcccccee
Q 002584 767 VILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLN 846 (904)
Q Consensus 767 TlL~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~il~G~y~i~g~~i~~R~rL~~~V~~~G~~~~~~~~~ALN 846 (904)
|||+|+|.+...++||+|||+|+||||+++++++++++|+++++|+|. ++.|++|++++.++++.. ..++|||
T Consensus 75 T~L~aa~~~~~~~~Pilgin~G~lGFl~~~~~~~~~~~l~~i~~g~~~-----i~~r~~L~~~v~~~~~~~--~~~~aLN 147 (292)
T PRK03378 75 NMLGAARVLARYDIKVIGINRGNLGFLTDLDPDNALQQLSDVLEGHYI-----SEKRFLLEAQVCRHGQQK--RISTAIN 147 (292)
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCcccccCHHHHHHHHHHHHcCCce-----EEEEEEEEEEEEeCCceE--EeEEEEE
Confidence 999999999888999999999999999999999999999999999864 689999999998776543 2357999
Q ss_pred eEEEecCCCCceEEEEEEECCEEeEEEEeCeEEECCCcchHHHhhhcCCccccccC
Q 002584 847 EVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICLP 902 (904)
Q Consensus 847 EVvI~Rg~~~~l~~i~v~idg~~i~~~~gDGVIVSTPTGSTAYslSAGGPIV~~~~ 902 (904)
|++|.++..++++++++++||+++++|+||||||||||||||||||||||||+|--
T Consensus 148 dvvi~~~~~~~~i~~~v~idg~~~~~~~~DGlIvsTptGSTAYslSAGGPii~P~~ 203 (292)
T PRK03378 148 EVVLHPGKVAHMIEFEVYIDDNFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSL 203 (292)
T ss_pred EEEEccCCCccEEEEEEEECCEEEEEEEccEEEEeCCCchHHhHhhcCCceeCCCC
Confidence 99999999999999999999999999999999999999999999999999999853
No 10
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=374.61 Aligned_cols=201 Identities=29% Similarity=0.465 Sum_probs=169.3
Q ss_pred ccCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCC
Q 002584 687 KTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (904)
Q Consensus 687 ~~~pk~VlIv~K~~~-~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGD 765 (904)
++..++|+|+.|.+. .+.+.+.++++||.+ .+++++++......+... .+. ..+..++.+.+|+||++|||
T Consensus 2 ~~~~~~v~iv~~~~~~~~~e~~~~i~~~L~~-~g~~v~v~~~~~~~~~~~-~~~------~~~~~~~~~~~d~vi~~GGD 73 (291)
T PRK02155 2 KSQFKTVALIGRYQTPGIAEPLESLAAFLAK-RGFEVVFEADTARNIGLT-GYP------ALTPEEIGARADLAVVLGGD 73 (291)
T ss_pred CCcCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCcc-ccc------ccChhHhccCCCEEEEECCc
Confidence 344688999999875 677889999999965 689999987644322110 000 00113445578999999999
Q ss_pred chHHHHHHhcCCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHcCCCCCCceeeeEEEEEEEEEEeCCeecCCccccce
Q 002584 766 GVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVL 845 (904)
Q Consensus 766 GTlL~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~il~G~y~i~g~~i~~R~rL~~~V~~~G~~~~~~~~~AL 845 (904)
||+|+|+|.+...++|++|||+|+||||++++++++++.|+++++|+|. +++|++|++++.++|+.. ..++||
T Consensus 74 Gt~l~~~~~~~~~~~pilGIn~G~lGFL~~~~~~~~~~~l~~~~~g~~~-----i~~r~~L~~~v~~~~~~~--~~~~Al 146 (291)
T PRK02155 74 GTMLGIGRQLAPYGVPLIGINHGRLGFITDIPLDDMQETLPPMLAGNYE-----EEERMLLEARVVRDGEPI--FHALAF 146 (291)
T ss_pred HHHHHHHHHhcCCCCCEEEEcCCCccccccCCHHHHHHHHHHHHcCCce-----EEEeEEEEEEEEECCeEE--Eeeeee
Confidence 9999999999888999999999999999999999999999999999965 689999999998777653 235799
Q ss_pred eeEEEecCCCCceEEEEEEECCEEeEEEEeCeEEECCCcchHHHhhhcCCccccccC
Q 002584 846 NEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICLP 902 (904)
Q Consensus 846 NEVvI~Rg~~~~l~~i~v~idg~~i~~~~gDGVIVSTPTGSTAYslSAGGPIV~~~~ 902 (904)
||++|.|+..++++++++++||+++.+|+||||||||||||||||+|||||||||--
T Consensus 147 Nev~v~~~~~~~~~~~~v~i~~~~~~~~~gDGlIVsTPtGSTAYslSaGGPIv~p~~ 203 (291)
T PRK02155 147 NDVVVNRSGFSGMVELRVSVDGRFMYNQRSDGLIVATPTGSTAYALSAGGPILHPQL 203 (291)
T ss_pred eheeeccCCCCceEEEEEEECCEEEEEEecCeEEEECCCchhhhhhhcCCcccCCCC
Confidence 999999999999999999999999999999999999999999999999999999753
No 11
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=9.1e-42 Score=396.20 Aligned_cols=202 Identities=28% Similarity=0.489 Sum_probs=172.6
Q ss_pred cccccCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhc-CCCCccceeeeccCcccccCCCcEEEE
Q 002584 684 LMWKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFAR-IPGFGFVQTFYLQDTSDLHERVDFVAC 761 (904)
Q Consensus 684 l~w~~~pk~VlIv~K~~~-~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~-~~~~~~~~~~~~~~~~d~~~~~DlVIv 761 (904)
-.|..+|++|+|+.|+.. ++.+.+.++++||.+ .+++|+++++....+.. .+. .. ....+. .++|+||+
T Consensus 284 ~~w~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~-~~~~v~~~~~~~~~~~~~~~~-----~~--~~~~~~-~~~dlvi~ 354 (569)
T PRK14076 284 NKWRIKPTKFGIVSRIDNEEAINLALKIIKYLDS-KGIPYELESFLYNKLKNRLNE-----EC--NLIDDI-EEISHIIS 354 (569)
T ss_pred hhcccCCcEEEEEcCCCCHHHHHHHHHHHHHHHH-CCCEEEEechhhhhhcccccc-----cc--cccccc-cCCCEEEE
Confidence 469999999999999875 677889999999965 69999998765443321 000 00 001112 36899999
Q ss_pred EcCCchHHHHHHhcCCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHcCCCCCCceeeeEEEEEEEEEEeCCeecCCcc
Q 002584 762 LGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKV 841 (904)
Q Consensus 762 LGGDGTlL~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~il~G~y~i~g~~i~~R~rL~~~V~~~G~~~~~~~ 841 (904)
||||||||+|+|.+...++||||||+|+||||++++++++++.|+++++|+|. +++|++|++++.++++.. ..
T Consensus 355 lGGDGT~L~aa~~~~~~~~PilGin~G~lGFL~~~~~~~~~~~l~~~~~g~~~-----i~~r~~L~~~v~~~~~~~--~~ 427 (569)
T PRK14076 355 IGGDGTVLRASKLVNGEEIPIICINMGTVGFLTEFSKEEIFKAIDSIISGEYE-----IEKRTKLSGFILKDGHQN--IL 427 (569)
T ss_pred ECCcHHHHHHHHHhcCCCCCEEEEcCCCCCcCcccCHHHHHHHHHHHHcCCce-----EEEeEEEEEEEEECCcce--ee
Confidence 99999999999999999999999999999999999999999999999999965 699999999998776543 23
Q ss_pred ccceeeEEEecCCCCceEEEEEEECCEEeEEEEeCeEEECCCcchHHHhhhcCCcccccc
Q 002584 842 FDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICL 901 (904)
Q Consensus 842 ~~ALNEVvI~Rg~~~~l~~i~v~idg~~i~~~~gDGVIVSTPTGSTAYslSAGGPIV~~~ 901 (904)
++||||++|.|+..++++++++||||+++++|+||||||||||||||||||||||||||-
T Consensus 428 ~~alNdv~i~~~~~~~~~~~~v~i~~~~~~~~~~DGlivsTptGSTaYslSAGGPiv~p~ 487 (569)
T PRK14076 428 PSALNEVVITTKNPAKMLHFEVYVNGELVEEVRADGIIISTPTGSTAYSLSAGGPIVEPT 487 (569)
T ss_pred eEEEEEEEEccCCCCceEEEEEEECCEEEEEEECCEEEEeCCCchHHHHhhCCCceeCCC
Confidence 579999999999999999999999999999999999999999999999999999999984
No 12
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.3e-41 Score=366.88 Aligned_cols=198 Identities=28% Similarity=0.473 Sum_probs=167.1
Q ss_pred CCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchH
Q 002584 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (904)
Q Consensus 690 pk~VlIv~K~~~-~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTl 768 (904)
.++|+|+.+++. .+.+.++++.+||.+ +++++++++...+.+.. .... . ....++.+.+|+||++|||||+
T Consensus 4 ~~~v~iv~~~~k~~a~e~~~~i~~~L~~-~giev~v~~~~~~~~~~-~~~~----~--~~~~~~~~~~d~vi~~GGDGt~ 75 (295)
T PRK01231 4 FRNIGLIGRLGSSSVVETLRRLKDFLLD-RGLEVILDEETAEVLPG-HGLQ----T--VSRKLLGEVCDLVIVVGGDGSL 75 (295)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCc-cccc----c--cchhhcccCCCEEEEEeCcHHH
Confidence 468999999876 567789999999965 68999998764432210 0000 0 0112344578999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHcCCCCCCceeeeEEEEEEEEEEeCCeecCCccccceeeE
Q 002584 769 LHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEV 848 (904)
Q Consensus 769 L~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~il~G~y~i~g~~i~~R~rL~~~V~~~G~~~~~~~~~ALNEV 848 (904)
|++++.+...++||+|||+|+||||+++++++++++|+++++|+|. ++.|++|++++.++|+.. ..++||||+
T Consensus 76 l~~~~~~~~~~~Pvlgin~G~lGFl~~~~~~~~~~~l~~~~~g~~~-----i~~r~~L~~~v~~~~~~~--~~~~ALNev 148 (295)
T PRK01231 76 LGAARALARHNVPVLGINRGRLGFLTDIRPDELEFKLAEVLDGHYQ-----EEERFLLEAEVRRGGEVI--GQGDALNDV 148 (295)
T ss_pred HHHHHHhcCCCCCEEEEeCCcccccccCCHHHHHHHHHHHHcCCce-----EEEEEEEEEEEEECCcEE--eeeeEEEEE
Confidence 9999999888999999999999999999999999999999999965 699999999998776643 235799999
Q ss_pred EEecCCCCceEEEEEEECCEEeEEEEeCeEEECCCcchHHHhhhcCCccccccC
Q 002584 849 VVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICLP 902 (904)
Q Consensus 849 vI~Rg~~~~l~~i~v~idg~~i~~~~gDGVIVSTPTGSTAYslSAGGPIV~~~~ 902 (904)
+|.++..++++++++++||+++++|+||||||||||||||||+|||||||||--
T Consensus 149 vi~~~~~~~~~~~~v~id~~~~~~~~~DGlivsTptGSTAY~lSAGGpIv~p~~ 202 (295)
T PRK01231 149 VLHPGKSTRMIEFELYIDGQFVCSQRSDGLIVSTPTGSTAYALSGGGPIMHPKL 202 (295)
T ss_pred EEccCCCCcEEEEEEEECCEEEEEEEcceEEEeCCCCchhhhhhcCCceecCCC
Confidence 999999999999999999999999999999999999999999999999999853
No 13
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.4e-41 Score=362.92 Aligned_cols=180 Identities=29% Similarity=0.474 Sum_probs=153.4
Q ss_pred HHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHHHHHHhcCCCCCcEEEEe
Q 002584 707 AKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFN 786 (904)
Q Consensus 707 a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN 786 (904)
++++++||.+ +|+.|+++++.+..+. .+.. ...+..++.+.+|+||++|||||||+|+|.+...++||+|||
T Consensus 2 ~~~l~~~l~~-~g~~v~~~~~~~~~~~-~~~~------~~~~~~~~~~~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn 73 (272)
T PRK02231 2 HKNLFHWLKE-RGYQVLVEKEIAEQLN-LPEN------HLASLEEIGQRAQLAIVIGGDGNMLGRARVLAKYDIPLIGIN 73 (272)
T ss_pred HHHHHHHHHH-CCCEEEEecchhhhcC-cccc------ccCChHHhCcCCCEEEEECCcHHHHHHHHHhccCCCcEEEEe
Confidence 5788999964 6999999886544331 1110 000113455578999999999999999999998899999999
Q ss_pred CCCCcccCCCCcccHHHHHHHHHc-CCCCCCceeeeEEEEEEEEEEeCCeecCCccccceeeEEEecCCCCceEEEEEEE
Q 002584 787 LGSLGFLTSHPFEDYRQDLRQVIY-GNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYE 865 (904)
Q Consensus 787 ~GsLGFLt~~~~ed~~~~L~~il~-G~y~i~g~~i~~R~rL~~~V~~~G~~~~~~~~~ALNEVvI~Rg~~~~l~~i~v~i 865 (904)
+|+||||++++++++.+.|+++++ |+|. +++|++|++++.++|+.+. .++||||++|.|+..++++++++++
T Consensus 74 ~G~lGFL~~~~~~~~~~~l~~~~~~g~~~-----i~~r~~L~~~v~~~~~~~~--~~~alNev~i~~~~~~~~~~~~v~i 146 (272)
T PRK02231 74 RGNLGFLTDIDPKNAYEQLEACLERGEFF-----VEERFLLEAKIERNGKIIA--TSNALNEVVIHPAKIAHMIDFHVYI 146 (272)
T ss_pred CCCCcccccCCHHHHHHHHHHHHhcCCce-----EEEeeeEEEEEEECCeEee--eeEEEEEEEEecCCCCceEEEEEEE
Confidence 999999999999999999999999 8854 7999999999987776542 3579999999999999999999999
Q ss_pred CCEEeEEEEeCeEEECCCcchHHHhhhcCCcccccc
Q 002584 866 HDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICL 901 (904)
Q Consensus 866 dg~~i~~~~gDGVIVSTPTGSTAYslSAGGPIV~~~ 901 (904)
||+++++|+||||||||||||||||+|||||||+|-
T Consensus 147 ~~~~~~~~~~DGlIVsTPtGSTAY~lSAGGPIv~P~ 182 (272)
T PRK02231 147 DDKFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPN 182 (272)
T ss_pred CCEEEEEEecCeEEEECCCcHHHHHhhCCCceeCCC
Confidence 999999999999999999999999999999999984
No 14
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=3.9e-41 Score=359.47 Aligned_cols=182 Identities=30% Similarity=0.527 Sum_probs=155.0
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHHH
Q 002584 692 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (904)
Q Consensus 692 ~VlIv~K~~~-~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL~ 770 (904)
+|+|+.|+.. ++.+.++++++|| + .+++++++.+.++.+. ...+ +..+. ++|+||++|||||||+
T Consensus 2 ~i~iv~~~~~~~~~~~~~~i~~~l-~-~g~~~~~~~~~~~~~~-~~~~---------~~~~~--~~D~vi~lGGDGT~L~ 67 (271)
T PRK01185 2 KVAFVIRKDCKRCIKIAKSIIELL-P-PDWEIIYEMEAAKALG-MDGL---------DIEEI--NADVIITIGGDGTILR 67 (271)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHH-h-cCCEEEEechhhhhcC-cccC---------ccccc--CCCEEEEEcCcHHHHH
Confidence 3888888775 6778899999999 4 5899998876543321 1100 11122 6899999999999999
Q ss_pred HHHhcCCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHcCCCCCCceeeeEEEEEEEEEEeCCeecCCccccceeeEEE
Q 002584 771 ASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVV 850 (904)
Q Consensus 771 Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~il~G~y~i~g~~i~~R~rL~~~V~~~G~~~~~~~~~ALNEVvI 850 (904)
|+|.+. +||+|||+|+||||+++++++++++|+++++|+|. +++|++|++.+ +|+. .++||||++|
T Consensus 68 a~~~~~---~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~~~-----i~~r~~L~~~v--~g~~----~~~aLNdvvv 133 (271)
T PRK01185 68 TLQRAK---GPILGINMGGLGFLTEIEIDEVGSAIKKLIRGEYF-----IDERMKLKVYI--NGER----LEDCTNEAVI 133 (271)
T ss_pred HHHHcC---CCEEEEECCCCccCcccCHHHHHHHHHHHHcCCcE-----EEEeeEEEEEE--CCcE----eEEEEEEEEE
Confidence 999874 59999999999999999999999999999999865 68999999987 5543 2469999999
Q ss_pred ecCCCCceEEEEEEECCEEeEEEEeCeEEECCCcchHHHhhhcCCcccccc
Q 002584 851 DRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICL 901 (904)
Q Consensus 851 ~Rg~~~~l~~i~v~idg~~i~~~~gDGVIVSTPTGSTAYslSAGGPIV~~~ 901 (904)
.|+..++++++++|+||+++.+|+||||||||||||||||+|||||||+|-
T Consensus 134 ~~~~~~~~i~~~v~i~~~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~ 184 (271)
T PRK01185 134 HTDRIAKIRQFKIYYDGHFLDTFKADGVIVATPTGSTSYSSSAGGPILLPN 184 (271)
T ss_pred ecCCCCcEEEEEEEECCEEEEEEEeeEEEEeCCCchHHHHhhCCCceeCCC
Confidence 999999999999999999999999999999999999999999999999985
No 15
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=3.9e-41 Score=358.45 Aligned_cols=171 Identities=23% Similarity=0.327 Sum_probs=149.2
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHHHH
Q 002584 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 771 (904)
Q Consensus 692 ~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL~A 771 (904)
+|+|+.+..+++.+.+.++.+||.. .|+++ + .+++|+||++|||||||+|
T Consensus 2 ~i~Ii~~~~~~~~~~~~~l~~~l~~-~g~~~--~---------------------------~~~~Dlvi~iGGDGT~L~a 51 (265)
T PRK04885 2 KVAIISNGDPKSKRVASKLKKYLKD-FGFIL--D---------------------------EKNPDIVISVGGDGTLLSA 51 (265)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHH-cCCcc--C---------------------------CcCCCEEEEECCcHHHHHH
Confidence 3888888666788899999999964 45541 0 0247999999999999999
Q ss_pred HHhcCC--CCCcEEEEeCCCCcccCCCCcccHHHHHHHHHcCCCCCCceeeeEEEEEEEEEEeCCeecCCccccceeeEE
Q 002584 772 SNLFRG--AVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (904)
Q Consensus 772 ar~~~~--~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~il~G~y~i~g~~i~~R~rL~~~V~~~G~~~~~~~~~ALNEVv 849 (904)
+|.+.. .++||+|||+|+||||++++++++++.|+++++|+|. +++|++|++++.++++.. ..++||||++
T Consensus 52 ~~~~~~~~~~iPilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y~-----i~~r~~L~~~v~~~~~~~--~~~~alNev~ 124 (265)
T PRK04885 52 FHRYENQLDKVRFVGVHTGHLGFYTDWRPFEVDKLVIALAKDPGQ-----VVSYPLLEVKITYEDGEK--EKYLALNEAT 124 (265)
T ss_pred HHHhcccCCCCeEEEEeCCCceecccCCHHHHHHHHHHHHcCCce-----EEEEeeEEEEEEeCCCcE--eeeeeeeeee
Confidence 999987 6999999999999999999999999999999999965 689999999987655432 1357999999
Q ss_pred EecCCCCceEEEEEEECCEEeEEEEeCeEEECCCcchHHHhhhcCCcccccc
Q 002584 850 VDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICL 901 (904)
Q Consensus 850 I~Rg~~~~l~~i~v~idg~~i~~~~gDGVIVSTPTGSTAYslSAGGPIV~~~ 901 (904)
|.++. +++.+++++||+++++|+||||||||||||||||||||||||||-
T Consensus 125 i~~~~--~~~~~~v~id~~~~~~~~gDGlIVsTptGSTAYslSaGGPIv~P~ 174 (265)
T PRK04885 125 IKRIE--GTLVADVYINGVLFERFRGDGLCVSTPTGSTAYNKSLGGAVLHPS 174 (265)
T ss_pred eccCC--ceEEEEEEECCEEEEEEEcCEEEEECCCChHHHHhhCCCceeCCC
Confidence 99865 689999999999999999999999999999999999999999984
No 16
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=100.00 E-value=2.8e-40 Score=354.21 Aligned_cols=192 Identities=32% Similarity=0.529 Sum_probs=166.2
Q ss_pred CEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHH
Q 002584 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (904)
Q Consensus 691 k~VlIv~K~~~-~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL 769 (904)
++|+|+.+++. ++...++.+..|+.. .+..+.+++...+.+... . .+ .+...+.+|+|+++|||||+|
T Consensus 1 ~~~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~l~~~--~----~~----~~~~~~~~d~ivvlGGDGtlL 69 (281)
T COG0061 1 KKVGIVGRPDKPEALKIAKRLYEFLKF-KGVTVEVDQELAEELKDF--A----DY----VDDDEEKADLIVVLGGDGTLL 69 (281)
T ss_pred CeEEEEecCCcHHHHHHHHHHHHHHHh-cCceEEEechhhhhcccc--c----cc----ccccccCceEEEEeCCcHHHH
Confidence 36889999886 577889999999964 688899888877665421 0 00 111236799999999999999
Q ss_pred HHHHhcCCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHcCCCCCCceeeeEEEEEEEEEEeCCeecCCccccceeeEE
Q 002584 770 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (904)
Q Consensus 770 ~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~il~G~y~i~g~~i~~R~rL~~~V~~~G~~~~~~~~~ALNEVv 849 (904)
++++.+...++||+|||+|+|||||+++++++++.++++++|.| .+++|++|++.+.+.+ . ..++||||++
T Consensus 70 ~~~~~~~~~~~pilgin~G~lGFLt~~~~~~~~~~~~~~~~~~~-----~~~~r~~l~~~v~~~~--~--~~~~aLNEv~ 140 (281)
T COG0061 70 RAARLLARLDIPVLGINLGHLGFLTDFEPDELEKALDALLEGEY-----RIEERLLLEVSVNRGD--I--RRALALNEVV 140 (281)
T ss_pred HHHHHhccCCCCEEEEeCCCcccccccCHHHHHHHHHHHhcCce-----EEEEeEEEEEEEEeCC--c--cccceeeEEE
Confidence 99999999999999999999999999999999999999999874 4689999999997765 1 3578999999
Q ss_pred EecCCCCceEEEEEEECCEEeEEEEeCeEEECCCcchHHHhhhcCCccccccC
Q 002584 850 VDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICLP 902 (904)
Q Consensus 850 I~Rg~~~~l~~i~v~idg~~i~~~~gDGVIVSTPTGSTAYslSAGGPIV~~~~ 902 (904)
|.|+..++|+.+++|+||+++++++||||||||||||||||+|||||||||.-
T Consensus 141 I~~~~~~~~~~~~v~id~~~~~~~r~DGliVsTPTGSTAY~lSAGGPIv~P~l 193 (281)
T COG0061 141 IHRGSPAKMIEFEVYIDDEFFESFRGDGLIVSTPTGSTAYNLSAGGPILHPGL 193 (281)
T ss_pred EecCCCCcEEEEEEEECCEEEEEEecCEEEEEcCCcHHHHhhhcCCCccCCCC
Confidence 99999999999999999999999999999999999999999999999999853
No 17
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.9e-40 Score=353.02 Aligned_cols=172 Identities=23% Similarity=0.338 Sum_probs=151.1
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHHH
Q 002584 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (904)
Q Consensus 691 k~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL~ 770 (904)
++|+|+.+..+.+.+.++++.+||.+ .|+++.++ . .++|+||++|||||||+
T Consensus 3 ~~i~iv~~~~~~a~~~~~~l~~~l~~-~g~~~~~~--------------------------~-~~~D~vi~lGGDGT~L~ 54 (264)
T PRK03501 3 RNLFFFYKRDKELVEKVKPLKKIAEE-YGFTVVDH--------------------------P-KNANIIVSIGGDGTFLQ 54 (264)
T ss_pred cEEEEEECCCHHHHHHHHHHHHHHHH-CCCEEEcC--------------------------C-CCccEEEEECCcHHHHH
Confidence 36899988877888889999999965 57766521 0 24799999999999999
Q ss_pred HHHhcCCC-CCcEEEEeC-CCCcccCCCCcccHHHHHHHHHcCCCCCCceeeeEEEEEEEEEEeCCeecCCccccceeeE
Q 002584 771 ASNLFRGA-VPPVISFNL-GSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEV 848 (904)
Q Consensus 771 Aar~~~~~-~~PVLGIN~-GsLGFLt~~~~ed~~~~L~~il~G~y~i~g~~i~~R~rL~~~V~~~G~~~~~~~~~ALNEV 848 (904)
|+|.+... .+||+|||+ |+||||++++++++++.|+++++|+|. +++|++|++++ +|+. .++||||+
T Consensus 55 a~~~~~~~~~~pilgIn~~G~lGFL~~~~~~~~~~~l~~i~~g~~~-----~~~r~~l~~~v--~~~~----~~~alNev 123 (264)
T PRK03501 55 AVRKTGFREDCLYAGISTKDQLGFYCDFHIDDLDKMIQAITKEEIE-----VRKYPTIEVTV--DGST----SFYCLNEF 123 (264)
T ss_pred HHHHhcccCCCeEEeEecCCCCeEcccCCHHHHHHHHHHHHcCCcE-----EEEeeeEEEEE--CCcc----ceEEEEEE
Confidence 99998765 789999999 999999999999999999999999965 69999999987 4432 25799999
Q ss_pred EEecCCCCceEEEEEEECCEEeEEEEeCeEEECCCcchHHHhhhcCCccccccC
Q 002584 849 VVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICLP 902 (904)
Q Consensus 849 vI~Rg~~~~l~~i~v~idg~~i~~~~gDGVIVSTPTGSTAYslSAGGPIV~~~~ 902 (904)
+| ++..++++.++++|||+++++|+||||||||||||||||+|||||||||--
T Consensus 124 vi-~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPtGSTAY~lSAGGPIv~P~~ 176 (264)
T PRK03501 124 SI-RSSIIKTFVIDVYIDDLHFETFRGDGMVVSTPTGSTAYNKSVRGAVVDPLI 176 (264)
T ss_pred EE-cCCCCceEEEEEEECCEEeEEEecCEEEEeCCCchHHHHhhcCCcccCCCC
Confidence 99 777788999999999999999999999999999999999999999999854
No 18
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.3e-39 Score=348.85 Aligned_cols=188 Identities=31% Similarity=0.483 Sum_probs=157.4
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccc-cCCCcEEEEEcCCchHH
Q 002584 692 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL 769 (904)
Q Consensus 692 ~VlIv~K~~~-~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~-~~~~DlVIvLGGDGTlL 769 (904)
+|+|+.+++. +..+.+.++++||.+ ++++|.++++.......... ....+. ..++|+||++|||||+|
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~-~g~~v~v~~~~~~~~~~~~~---------~~~~~~~~~~~d~vi~iGGDGTlL 71 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKV-SGYEVVVDSETYEHLPEFSE---------EDVLPLEEMDVDFIIAIGGDGTIL 71 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCcccc---------cccccccccCCCEEEEEeCcHHHH
Confidence 4888888875 678889999999965 68999987643321110000 000111 23689999999999999
Q ss_pred HHHHhcCCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHcCCCCCCceeeeEEEEEEEEEEeCCeecCCccccceeeEE
Q 002584 770 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (904)
Q Consensus 770 ~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~il~G~y~i~g~~i~~R~rL~~~V~~~G~~~~~~~~~ALNEVv 849 (904)
+|+| +...++||+|||+|++|||++++++++.++|+++++|+|. ++.|++|++.+ +|+. .++||||++
T Consensus 72 ~a~~-~~~~~~pi~gIn~G~lGFl~~~~~~~~~~~l~~i~~g~~~-----~~~r~~l~~~~--~~~~----~~~alNdv~ 139 (277)
T PRK03708 72 RIEH-KTKKDIPILGINMGTLGFLTEVEPEETFFALSRLLEGDYF-----IDERIKLRVYI--NGEN----VPDALNEVV 139 (277)
T ss_pred HHHH-hcCCCCeEEEEeCCCCCccccCCHHHHHHHHHHHHcCCce-----EEEeEEEEEEE--CCeE----eEEEeeeEE
Confidence 9999 6677999999999999999999999999999999999865 68999999987 5543 257999999
Q ss_pred EecCCCCceEEEEEEECCEEeEEEEeCeEEECCCcchHHHhhhcCCcccccc
Q 002584 850 VDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICL 901 (904)
Q Consensus 850 I~Rg~~~~l~~i~v~idg~~i~~~~gDGVIVSTPTGSTAYslSAGGPIV~~~ 901 (904)
|.++..++++++++++||+++.+|+||||||||||||||||+|||||||||-
T Consensus 140 v~~~~~~~~~~~~v~idg~~~~~~~gDGvIvsTptGSTAY~lSaGGpIv~p~ 191 (277)
T PRK03708 140 ILTGIPGKIIHLKYYVDGELADEVRADGLIISTPTGSTAYAMSAGGPFVDPR 191 (277)
T ss_pred EecCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHHhhCCCcccCCC
Confidence 9999989999999999999999999999999999999999999999999984
No 19
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=9.9e-39 Score=338.42 Aligned_cols=171 Identities=27% Similarity=0.344 Sum_probs=147.3
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHHHH
Q 002584 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 771 (904)
Q Consensus 692 ~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL~A 771 (904)
+++|++|+. ..+.+.++.+||.+ .|+.+.++.+.. ....++|+||++|||||+|+|
T Consensus 2 ~~~~~~~~~--~~~~~~~~~~~l~~-~~~~~~~~~~~~---------------------~~~~~~d~vi~iGGDGT~L~a 57 (256)
T PRK14075 2 KLGIFYREE--KEKEAKFLKEKISK-EHEVVEFCEASA---------------------SGKVTADLIIVVGGDGTVLKA 57 (256)
T ss_pred EEEEEeCcc--HHHHHHHHHHHHHH-cCCeeEeecccc---------------------cccCCCCEEEEECCcHHHHHH
Confidence 366776665 55778899999965 577777654311 122467999999999999999
Q ss_pred HHhcCCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHcCCCCCCceeeeEEEEEEEEEEeCCeecCCccccceeeEEEe
Q 002584 772 SNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVD 851 (904)
Q Consensus 772 ar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~il~G~y~i~g~~i~~R~rL~~~V~~~G~~~~~~~~~ALNEVvI~ 851 (904)
+|.+ ++||+|||+|+||||++++++++++.|+++++|+|. ++.|++|++++. ++ .++||||++|.
T Consensus 58 ~~~~---~~Pilgin~G~lGfl~~~~~~~~~~~l~~~~~g~~~-----~~~r~~l~~~~~-~~------~~~alNev~i~ 122 (256)
T PRK14075 58 AKKV---GTPLVGFKAGRLGFLSSYTLEEIDRFLEDLKNWNFR-----EEKRWFLKIESE-LG------NHLALNDVTLE 122 (256)
T ss_pred HHHc---CCCEEEEeCCCCccccccCHHHHHHHHHHHHcCCcE-----EEEeeEEEEEEc-CC------cEEEEEEEEEe
Confidence 9998 799999999999999999999999999999999865 689999999873 22 25799999999
Q ss_pred cCCCCceEEEEEEECCEEeEEEEeCeEEECCCcchHHHhhhcCCcccccc
Q 002584 852 RGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICL 901 (904)
Q Consensus 852 Rg~~~~l~~i~v~idg~~i~~~~gDGVIVSTPTGSTAYslSAGGPIV~~~ 901 (904)
++..++++++++++||+.+.+|+||||||||||||||||+|||||||||-
T Consensus 123 ~~~~~~~~~~~v~i~~~~~~~~~~DG~ivsTptGSTaY~lSaGGpiv~p~ 172 (256)
T PRK14075 123 RDPSQKMVEIEVSFEDHSSMWFFADGVVISTPTGSTAYSLSLGGPIILPN 172 (256)
T ss_pred cCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHHhhCCCceeCCC
Confidence 98889999999999999999999999999999999999999999999985
No 20
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=8.1e-39 Score=346.66 Aligned_cols=194 Identities=29% Similarity=0.428 Sum_probs=157.6
Q ss_pred CCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchH
Q 002584 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (904)
Q Consensus 690 pk~VlIv~K~~~-~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTl 768 (904)
.++|+||.+++. ...+.+.++.+||. +.|++|.++....+... ... + .......+|+||++|||||+
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~-~~g~~v~v~~~~~~~~~-~~~------~----~~~~~~~~d~vi~~GGDGT~ 70 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLE-ARGCKVLMGPSGPKDNP-YPV------F----LASASELIDLAIVLGGDGTV 70 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHH-HCCCEEEEecCchhhcc-ccc------h----hhccccCcCEEEEECCcHHH
Confidence 367999999875 56678899999996 46899888765432111 100 0 12234568999999999999
Q ss_pred HHHHHhcCCCCCcEEEEeC-CCCcccCCCC--cccHHHHHHHHHcCCCCCCceeeeEEEEEEEEEEeCCee---cCCccc
Q 002584 769 LHASNLFRGAVPPVISFNL-GSLGFLTSHP--FEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKA---MPGKVF 842 (904)
Q Consensus 769 L~Aar~~~~~~~PVLGIN~-GsLGFLt~~~--~ed~~~~L~~il~G~y~i~g~~i~~R~rL~~~V~~~G~~---~~~~~~ 842 (904)
|++++.+...++||+|||+ |+||||+++. .++ ++.|+++++|+|. ++.|++|+|++.++|+. .....+
T Consensus 71 l~~~~~~~~~~~pv~gin~~G~lGFL~~~~~~~~~-~~~l~~i~~g~~~-----i~~r~~L~~~~~~~~~~~~~~~~~~~ 144 (305)
T PRK02645 71 LAAARHLAPHDIPILSVNVGGHLGFLTHPRDLLQD-ESVWDRLQEDRYA-----IERRMMLQARVFEGDRSNEEPVSESY 144 (305)
T ss_pred HHHHHHhccCCCCEEEEecCCcceEecCchhhcch-HHHHHHHHcCCce-----EEEeeEEEEEEEeCCcccccccccce
Confidence 9999999888999999999 8999999875 344 7899999999965 69999999999876531 011246
Q ss_pred cceeeEEEecCCCCceE--EEEEEECCEEeEEEEeCeEEECCCcchHHHhhhcCCcccccc
Q 002584 843 DVLNEVVVDRGSNPYLS--KIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICL 901 (904)
Q Consensus 843 ~ALNEVvI~Rg~~~~l~--~i~v~idg~~i~~~~gDGVIVSTPTGSTAYslSAGGPIV~~~ 901 (904)
+||||++|.++..++++ .++++|||+++++|+||||||||||||||||||||||||||-
T Consensus 145 ~AlNev~i~~~~~~~~~~~~~~v~id~~~~~~~~gDGlIVsTPtGSTAYslSAGGPIv~P~ 205 (305)
T PRK02645 145 YALNDFYLKPASEDRSPTCILELEIDGEVVDQYQGDGLIVSTPTGSTAYTMAAGGPILHPG 205 (305)
T ss_pred EEEeeEEEeccCcccccceEEEEEECCEEEEEEecCEEEEecCCChhhhhhhcCCcccCCC
Confidence 79999999998877765 599999999999999999999999999999999999999974
No 21
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=100.00 E-value=5.6e-39 Score=343.93 Aligned_cols=203 Identities=33% Similarity=0.508 Sum_probs=165.0
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCC--Cccce---------eeeccCcccccCCCcEE
Q 002584 692 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPG--FGFVQ---------TFYLQDTSDLHERVDFV 759 (904)
Q Consensus 692 ~VlIv~K~~~-~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~--~~~~~---------~~~~~~~~d~~~~~DlV 759 (904)
+|+||.|+.. ++.+.++++++||.+..++.|+++..+.+.+...-. ..... ...........+++|+|
T Consensus 1 kVgii~np~~~~~~~~~~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i 80 (285)
T PF01513_consen 1 KVGIIANPNKPEAIELANELARWLLEKQGIEVLVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEMLEEGVDLI 80 (285)
T ss_dssp -EEEEESSCGHCCCHHHHHHHHHHHHTTTEEEEEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHHCCCSSEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHhccccccccccccccccccccchhhhhhcccCCCEE
Confidence 5899999995 688999999999986558999998877653321000 00000 01111222346789999
Q ss_pred EEEcCCchHHHHHHhcCCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHcCCCCCCceeeeEEEEEEEEEEeCCe--ec
Q 002584 760 ACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGK--AM 837 (904)
Q Consensus 760 IvLGGDGTlL~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~il~G~y~i~g~~i~~R~rL~~~V~~~G~--~~ 837 (904)
|++|||||+|+++|.+...++||+|||+|++|||++++++++.+.|+++++|+|. +++|++|++.+.+.+. ..
T Consensus 81 i~lGGDGT~L~~~~~~~~~~~Pilgin~G~lgfl~~~~~~~~~~~l~~~~~g~~~-----~~~r~~l~~~~~~~~~~~~~ 155 (285)
T PF01513_consen 81 IVLGGDGTFLRAARLFGDYDIPILGINTGTLGFLTEFEPEDIEEALEKILAGEYS-----IEERMRLEVSVDRKKGAEIA 155 (285)
T ss_dssp EEEESHHHHHHHHHHCTTST-EEEEEESSSSTSSSSEEGCGHHHHHHHHHHTHCE-----EEEEEEEEEEEEETTE-CEE
T ss_pred EEECCCHHHHHHHHHhccCCCcEEeecCCCccccccCCHHHHHHHHHHHhcCCeE-----EEEeeeEEEEEecCCcccee
Confidence 9999999999999999999999999999999999999999999999999999854 7999999999988765 22
Q ss_pred CCccccceeeEEEecCCCCceEEEEEEECCEEeEEEEeCeEEECCCcchHHHhhhcCCcccccc
Q 002584 838 PGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICL 901 (904)
Q Consensus 838 ~~~~~~ALNEVvI~Rg~~~~l~~i~v~idg~~i~~~~gDGVIVSTPTGSTAYslSAGGPIV~~~ 901 (904)
..+.||||++|.++..+.++.+++++|++++++++|||||||||||||||++|||||||||-
T Consensus 156 --~~~~alNei~i~~~~~~~~~~~~v~i~~~~~~~~~~dGlivsTptGSTay~lSaGGpiv~p~ 217 (285)
T PF01513_consen 156 --LIDYALNEIVISRGRASRMIELEVFIDGEFLETYRGDGLIVSTPTGSTAYSLSAGGPIVHPG 217 (285)
T ss_dssp --EEEEESSEEEEEESSTSSEEEEEEEETTEEEEEEEESEEEEEETGGGGTHHHHTT--EE-TT
T ss_pred --eeeeeecCeeEEcCCCccceEEEEEECCEEEEEEEEeeeEEEecCCceEEEEecCccEeccC
Confidence 34679999999999999999999999999999999999999999999999999999999974
No 22
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.3e-37 Score=330.36 Aligned_cols=161 Identities=24% Similarity=0.328 Sum_probs=137.7
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHHHH
Q 002584 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 771 (904)
Q Consensus 692 ~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL~A 771 (904)
++.|+.++.+++.+.+.++.+++.. .++ ..+.+|+||+||||||||+|
T Consensus 2 ~~~i~~~~~~~s~~~~~~l~~~~~~-~~~-------------------------------~~~~~D~vi~iGGDGT~L~a 49 (259)
T PRK00561 2 KYKIFASTTPQTEPVLPKLKKVLKK-KLA-------------------------------VEDGADYLFVLGGDGFFVST 49 (259)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHhh-CCC-------------------------------ccCCCCEEEEECCcHHHHHH
Confidence 4789999999888888888887742 111 01247999999999999999
Q ss_pred HHhcCCCCCcEEEEeCCCCcccCCCCcccHHH-HHHHHHcCCCCCCceeeeEEEEEEEEEEeCCeecCCccccceeeEEE
Q 002584 772 SNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQ-DLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVV 850 (904)
Q Consensus 772 ar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~-~L~~il~G~y~i~g~~i~~R~rL~~~V~~~G~~~~~~~~~ALNEVvI 850 (904)
+|.+...++||+|||+|+||||++++++++++ .++++.+ |. ++.|++|++.+ +++ ..+||||++|
T Consensus 50 ~~~~~~~~iPilGIN~G~lGFL~~~~~~~~~~~~~~~l~~--~~-----~~~r~~L~~~~--~~~-----~~~AlNE~vi 115 (259)
T PRK00561 50 AANYNCAGCKVVGINTGHLGFYTSFNETDLDQNFANKLDQ--LK-----FTQIDLLEVQI--DDQ-----IHLVLNELAV 115 (259)
T ss_pred HHHhcCCCCcEEEEecCCCccccccCHHHHHHHHHHHHhh--CC-----eEEEEEEEEEE--CCC-----eeEEEEEEEE
Confidence 99999999999999999999999999999998 6666654 33 47899999987 333 2479999999
Q ss_pred ecCCCCceEEEEEEECCEEeEEEEeCeEEECCCcchHHHhhhcCCcccccc
Q 002584 851 DRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICL 901 (904)
Q Consensus 851 ~Rg~~~~l~~i~v~idg~~i~~~~gDGVIVSTPTGSTAYslSAGGPIV~~~ 901 (904)
.++. ++.++++|||+++++++||||||||||||||||+|||||||+|-
T Consensus 116 ~~~~---~~~~~v~idg~~~~~~~gDGlIVsTPtGSTAYslSAGGPIv~P~ 163 (259)
T PRK00561 116 YTNT---AYPINIFIDNEFWEKYRGSGLLIGPRTGSTALAKSAKGAVIFPR 163 (259)
T ss_pred ccCC---ceEEEEEECCEEEEEEecCEEEEeCchHHHHHHHhCCCCccCCC
Confidence 8765 67999999999999999999999999999999999999999985
No 23
>PLN02929 NADH kinase
Probab=100.00 E-value=1.5e-35 Score=319.86 Aligned_cols=166 Identities=27% Similarity=0.371 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHHHHHHhcCCCCCcEE
Q 002584 704 MEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVI 783 (904)
Q Consensus 704 ~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVL 783 (904)
...+..+.+||.+ .|+++...... +..+...++|+||+||||||||+|+|.+ ..++||+
T Consensus 33 ~~~~~~~~~~L~~-~gi~~~~v~r~-------------------~~~~~~~~~Dlvi~lGGDGT~L~aa~~~-~~~iPvl 91 (301)
T PLN02929 33 KDTVNFCKDILQQ-KSVDWECVLRN-------------------ELSQPIRDVDLVVAVGGDGTLLQASHFL-DDSIPVL 91 (301)
T ss_pred HHHHHHHHHHHHH-cCCEEEEeecc-------------------ccccccCCCCEEEEECCcHHHHHHHHHc-CCCCcEE
Confidence 3456778888864 68877432110 0012235689999999999999999999 8889999
Q ss_pred EEeCC------------------CCcccCCCCcccHHHHHHHHHcCCCCCCceeeeEEEEEEEEEEeCCeecCCccccce
Q 002584 784 SFNLG------------------SLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVL 845 (904)
Q Consensus 784 GIN~G------------------sLGFLt~~~~ed~~~~L~~il~G~y~i~g~~i~~R~rL~~~V~~~G~~~~~~~~~AL 845 (904)
|||+| ++|||++++++++++.|+++++|+|. +++|+||++++ +|+.. ..+||
T Consensus 92 GIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~g~~~-----~~~r~~L~~~v--~g~~~---~~~AL 161 (301)
T PLN02929 92 GVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLFGRLK-----PTELSRISTVV--NGTLL---ETPAL 161 (301)
T ss_pred EEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHcCCce-----EEEeeeEEEEe--cCCcc---cceEe
Confidence 99999 79999999999999999999999965 68999999998 45433 13799
Q ss_pred eeEEEecCCCCceEEEEEEEC-----CEEeEEEEeCeEEECCCcchHHHhhhcCC---ccccc
Q 002584 846 NEVVVDRGSNPYLSKIECYEH-----DRLITKVQGDGVIVATPTGSTAYSTAAGG---SMVIC 900 (904)
Q Consensus 846 NEVvI~Rg~~~~l~~i~v~id-----g~~i~~~~gDGVIVSTPTGSTAYslSAGG---PIV~~ 900 (904)
||++|.++.+++++++++++| |.++.+++|||||||||||||||++|||| ||++|
T Consensus 162 NEv~I~~~~~~~~~~~~v~i~~~g~~~~~~~~~~~DGliVsTpTGSTAY~lSAGG~i~Piv~P 224 (301)
T PLN02929 162 NDVLIAHPSPAAVSRFSFRVGRQGGSSGPLINVRSSGLRVSTAAGSTAAMLSAGGFPMPLLSR 224 (301)
T ss_pred eEEEEccCCCccEEEEEEEEcCccCCCceeEEeecCcEEEeCCccHHHHHHhcCCCCCCCCCc
Confidence 999999999999999999999 88999999999999999999999999999 66665
No 24
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=100.00 E-value=1.3e-35 Score=312.99 Aligned_cols=135 Identities=27% Similarity=0.371 Sum_probs=115.0
Q ss_pred CCcEEEEEcCCchHHHHHHhcCCCCCcEEEEeCCCCcccCC-CCcccHHHHHHHHHcCCCCCCceeeeEEEEEEEEEEeC
Q 002584 755 RVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTS-HPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRN 833 (904)
Q Consensus 755 ~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~GsLGFLt~-~~~ed~~~~L~~il~G~y~i~g~~i~~R~rL~~~V~~~ 833 (904)
++|+||+||||||||+|+|.+...++||+|||+|+||||++ ++++++.+.|+++..+. +..|++ .+. ..+
T Consensus 25 ~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~G~lGFL~~~~~~~e~~~~l~~~~~~~-------~~~l~~-~~~-~~~ 95 (246)
T PRK04761 25 EADVIVALGGDGFMLQTLHRYMNSGKPVYGMNRGSVGFLMNEYSEDDLLERIAAAEPTV-------LHPLRM-TAT-DVS 95 (246)
T ss_pred cCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCCCCcccCCCCHHHHHHHHHHhhcCc-------EEEEEE-EEE-ECC
Confidence 47999999999999999999999999999999999999996 88999999999887653 233333 332 223
Q ss_pred CeecCCccccceeeEEEecCCCCceEEEEEEECCEE-eEEEEeCeEEECCCcchHHHhhhcCCccccccC
Q 002584 834 GKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRL-ITKVQGDGVIVATPTGSTAYSTAAGGSMVICLP 902 (904)
Q Consensus 834 G~~~~~~~~~ALNEVvI~Rg~~~~l~~i~v~idg~~-i~~~~gDGVIVSTPTGSTAYslSAGGPIV~~~~ 902 (904)
|+. ..++||||++|.|+. .+++.+++++||++ +.+++||||||||||||||||||||||||||.-
T Consensus 96 ~~~---~~~~ALNev~i~~~~-~~~~~~~v~idg~~~~~~~~gDGlIVSTPtGSTAY~lSAGGPIv~P~~ 161 (246)
T PRK04761 96 GEV---HEALAINEVSLFRQT-RQAAKLRISIDGKVRMEELVCDGVLVATPAGSTAYNLSAHGPILPLGS 161 (246)
T ss_pred CcE---eeeeeeeheeeecCC-CceEEEEEEECCEEEEEEEecCeEEEeCCcCHHHHHhhCCCcccCCCC
Confidence 432 235799999999987 67999999999996 999999999999999999999999999999854
No 25
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.90 E-value=9.6e-24 Score=208.89 Aligned_cols=132 Identities=22% Similarity=0.265 Sum_probs=85.2
Q ss_pred CceeeeecCCccccccCCCcccEEEcCC---CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEe
Q 002584 247 NWSPVYLSNSKDDIASKDSEVTFCRGGQ---VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIP 323 (904)
Q Consensus 247 Nfr~V~~~~~~~~~~~~~~e~~LYRSGq---pT~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIP 323 (904)
|||++++.++. ++...+.+.||||+. +|++|++.|.++||+||||||++. |.... +.....|++++|+|
T Consensus 1 N~RDlGg~~~~--~g~~ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~-E~~~~-----p~~~~~g~~~~~~p 72 (164)
T PF13350_consen 1 NFRDLGGYPTA--DGRRIRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPT-ERERA-----PDPLIDGVQYVHIP 72 (164)
T ss_dssp S-EEGGGTST------TS-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HH-HHHHH-----S----TT-EEEE--
T ss_pred CccccCCCCcc--ceeeecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCcc-ccccC-----CCCCcCCceeeeec
Confidence 88888776665 566778899999995 579999999999999999999986 22111 12344599999999
Q ss_pred cCCCCCCC-----------------------------HHHHHHHHHHHhcCCCCcEEEeCcCCCChHHHHHHHHHHHcCC
Q 002584 324 VEVRTAPT-----------------------------MEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (904)
Q Consensus 324 V~d~~~Ps-----------------------------~e~I~afleil~ds~~~PVLVHCtAGKDRTGaLvaLlr~~lGV 374 (904)
+....... .+.+.++++++.+.. +|+||||++||||||+++++++.++||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~-~p~l~HC~aGKDRTG~~~alll~~lGV 151 (164)
T PF13350_consen 73 IFGDDASSPDKLAELLQSSADAPRGMLEFYREMLESYAEAYRKIFELLADAP-GPVLFHCTAGKDRTGVVAALLLSLLGV 151 (164)
T ss_dssp SS-S-TTH----------HHHHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT---EEEE-SSSSSHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHhhhHHHHHHHHHhccCC-CcEEEECCCCCccHHHHHHHHHHHcCC
Confidence 98544331 134456677775555 799999999999999999999999999
Q ss_pred CHHHHHHhhcccc
Q 002584 375 CASQISGQTITSN 387 (904)
Q Consensus 375 ~~edIiaDYLlsn 387 (904)
+.++|++||++||
T Consensus 152 ~~~~I~~DY~lSn 164 (164)
T PF13350_consen 152 PDEDIIADYLLSN 164 (164)
T ss_dssp -HHHHHHHHHGGG
T ss_pred CHHHHHHHHHhcC
Confidence 9999999999997
No 26
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.84 E-value=1.2e-20 Score=188.88 Aligned_cols=122 Identities=23% Similarity=0.269 Sum_probs=87.9
Q ss_pred CCCceeeeecCCccccccCCCcccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEec
Q 002584 245 FANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPV 324 (904)
Q Consensus 245 i~Nfr~V~~~~~~~~~~~~~~e~~LYRSGqpT~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV 324 (904)
..||..|. +.|||||+|++.++++|+++|+||||+||+++. . .....+++..||+++|+|+
T Consensus 4 P~nF~~V~--------------~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~--~---~~~~~f~~~~~I~l~~~~~ 64 (164)
T PF03162_consen 4 PLNFGMVE--------------PGVYRSAQPTPANFPFLERLGLKTIINLRPEPP--S---QDFLEFAEENGIKLIHIPM 64 (164)
T ss_dssp -TT-EEEE--------------TTEEEESS--HHHHHHHHHHT-SEEEE--SS--------HHHHHHHHHTT-EEEE---
T ss_pred CccccCCC--------------CCccCCCCCChhhHHHHHHCCCceEEEecCCCC--C---HHHHHHHhhcCceEEEecc
Confidence 56888885 489999999999999999999999999999751 1 1344578999999999999
Q ss_pred CCCCC----CCHHHHHHHHHHHhcCCCCcEEEeCcCCCChHHHHHHHHHHHcCCCHHHHHHhhcc
Q 002584 325 EVRTA----PTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTIT 385 (904)
Q Consensus 325 ~d~~~----Ps~e~I~afleil~ds~~~PVLVHCtAGKDRTGaLvaLlr~~lGV~~edIiaDYLl 385 (904)
..... ++.+.+.++++++.+..++||||||..|+||||++++|+|.++||+.+.|+++|-.
T Consensus 65 ~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~~~~i~~Ey~~ 129 (164)
T PF03162_consen 65 SSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRKLQGWSLSSIFDEYRR 129 (164)
T ss_dssp ----GGG----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHH
T ss_pred ccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHHHcCCCHHHHHHHHHH
Confidence 86554 56788888888877888999999999999999999999999999999999999974
No 27
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.82 E-value=1.1e-19 Score=175.93 Aligned_cols=114 Identities=18% Similarity=0.240 Sum_probs=96.0
Q ss_pred cccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchh--hhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHh
Q 002584 266 EVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYE--AAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS 343 (904)
Q Consensus 266 e~~LYRSGqpT~eDLa~L~elGIKTVIDLRsee~e~~~~~--a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ 343 (904)
++.+|||+|++++|++.|+++|||||||||++. |....+ ..+...++..|++|+|+|+..+ .++++++.+|.++++
T Consensus 6 ~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~-E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~-~~~~~~v~~f~~~~~ 83 (135)
T TIGR01244 6 TEHLYVSPQLTKADAAQAAQLGFKTVINNRPDR-EEESQPDFAQIKAAAEAAGVTYHHQPVTAG-DITPDDVETFRAAIG 83 (135)
T ss_pred CCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCC-CCCCCCCHHHHHHHHHHCCCeEEEeecCCC-CCCHHHHHHHHHHHH
Confidence 357999999999999999999999999999985 222211 1234456778999999999854 578999999999995
Q ss_pred cCCCCcEEEeCcCCCChHHHHHHHHHHHcCCCHHHHHHhh
Q 002584 344 NSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQT 383 (904)
Q Consensus 344 ds~~~PVLVHCtAGKDRTGaLvaLlr~~lGV~~edIiaDY 383 (904)
..++|||+||++|| |||+++++++...|++.++|+++-
T Consensus 84 -~~~~pvL~HC~sG~-Rt~~l~al~~~~~g~~~~~i~~~~ 121 (135)
T TIGR01244 84 -AAEGPVLAYCRSGT-RSSLLWGFRQAAEGVPVEEIVRRA 121 (135)
T ss_pred -hCCCCEEEEcCCCh-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 56799999999999 999999999888999999998754
No 28
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.73 E-value=1.1e-17 Score=157.78 Aligned_cols=101 Identities=28% Similarity=0.384 Sum_probs=73.6
Q ss_pred cccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCc--chhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHh
Q 002584 266 EVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDN--FYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS 343 (904)
Q Consensus 266 e~~LYRSGqpT~eDLa~L~elGIKTVIDLRsee~e~~--~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ 343 (904)
+..||.||||+++|++.|+++|||||||||++. |.+ +....+...++..|++|+|+||. ...++.+++.+|.++++
T Consensus 6 ~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~-E~~~qp~~~~~~~~a~~~Gl~y~~iPv~-~~~~~~~~v~~f~~~l~ 83 (110)
T PF04273_consen 6 SDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDG-EEPGQPSSAEEAAAAEALGLQYVHIPVD-GGAITEEDVEAFADALE 83 (110)
T ss_dssp ETTEEEECS--HHHHHHHHHCT--EEEE-S-TT-STTT-T-HHCHHHHHHHCT-EEEE-----TTT--HHHHHHHHHHHH
T ss_pred CCCeEECCCCCHHHHHHHHHCCCcEEEECCCCC-CCCCCCCHHHHHHHHHHcCCeEEEeecC-CCCCCHHHHHHHHHHHH
Confidence 458999999999999999999999999999986 222 12234677899999999999999 56789999999999995
Q ss_pred cCCCCcEEEeCcCCCChHHHHHHHHHH
Q 002584 344 NSSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (904)
Q Consensus 344 ds~~~PVLVHCtAGKDRTGaLvaLlr~ 370 (904)
..++|||+||++|. |++++|+|...
T Consensus 84 -~~~~Pvl~hC~sG~-Ra~~l~~l~~~ 108 (110)
T PF04273_consen 84 -SLPKPVLAHCRSGT-RASALWALAQA 108 (110)
T ss_dssp -TTTTSEEEE-SCSH-HHHHHHHHHHH
T ss_pred -hCCCCEEEECCCCh-hHHHHHHHHhh
Confidence 56889999999999 99999999864
No 29
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=99.68 E-value=3.1e-17 Score=176.42 Aligned_cols=136 Identities=28% Similarity=0.319 Sum_probs=112.4
Q ss_pred cCCCcEEEEEcCCchHHHHHHhcCCCCCcEEEEeC---CCCcccCC--CCcccHHHHHHHHHcCCCCCCceeeeEEEEEE
Q 002584 753 HERVDFVACLGGDGVILHASNLFRGAVPPVISFNL---GSLGFLTS--HPFEDYRQDLRQVIYGNNTLDGVYITLRMRLC 827 (904)
Q Consensus 753 ~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~---GsLGFLt~--~~~ed~~~~L~~il~G~y~i~g~~i~~R~rL~ 827 (904)
-..+|+||++|||||||.|++.+.+..+||+|||. |+=|.|+= ..+++...+|.++..|++.+ ..|.|++
T Consensus 103 i~waD~VisvGGDGTfL~Aasrv~~~~~PViGvNtDP~~Seg~lcL~~~~~~n~~~al~k~~sgnF~w-----v~r~rir 177 (395)
T KOG4180|consen 103 IRWADMVISVGGDGTFLLAASRVIDDSKPVIGVNTDPTGSEGHLCLPDKYPSNPAGALCKLTSGNFEW-----VLRQRIR 177 (395)
T ss_pred CchhhEEEEecCccceeehhhhhhccCCceeeecCCCCcCcceEeccccCCCCcHHHHHHHHhccHHH-----hhhheeE
Confidence 46799999999999999999988888899999997 67777763 23477889999999999875 5688888
Q ss_pred EEEEeCCe-ecC---------------------------------CccccceeeEEEecCCCCceEEEEEEECCEEeEEE
Q 002584 828 CEIFRNGK-AMP---------------------------------GKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKV 873 (904)
Q Consensus 828 ~~V~~~G~-~~~---------------------------------~~~~~ALNEVvI~Rg~~~~l~~i~v~idg~~i~~~ 873 (904)
.++..++. ..+ .-.+.|||||.|...-+++++.|++.||+....+.
T Consensus 178 ~tv~g~~gip~p~dlh~~q~s~nqr~sa~~i~~~~~s~sea~~~~~LpvlALNEVfIgE~lsarVS~y~i~idd~~~~Kq 257 (395)
T KOG4180|consen 178 GTVVGDDGIPDPIDLHDQQLSDNQRSSAKEIEETLLSHSEAVEIVALPVLALNEVFIGESLSARVSYYEISIDDKDGVKQ 257 (395)
T ss_pred EEEecCCCCCCchhhhhhhhccccccchhhHHHHHHhhhhhccccccchhhhcceeecCcccccceeEEEEecCcccccc
Confidence 77763221 000 01245889999999999999999999999998899
Q ss_pred EeCeEEECCCcchHHHhhhc
Q 002584 874 QGDGVIVATPTGSTAYSTAA 893 (904)
Q Consensus 874 ~gDGVIVSTPTGSTAYslSA 893 (904)
++.|++|+|.||||+|+++.
T Consensus 258 Kssgl~vctgTGstsw~~~i 277 (395)
T KOG4180|consen 258 KSSGLVVCTGTGSTSWTFNI 277 (395)
T ss_pred cCCCeeEecCCCcceEeecc
Confidence 99999999999999998764
No 30
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.62 E-value=2.9e-15 Score=142.45 Aligned_cols=111 Identities=19% Similarity=0.257 Sum_probs=99.1
Q ss_pred ccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCc--ccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc
Q 002584 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAER--VKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN 344 (904)
Q Consensus 267 ~~LYRSGqpT~eDLa~L~elGIKTVIDLRsee--~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~d 344 (904)
..++.|||++++|+..++.+|||+|||.|++. +.+|.. +.++.+++..|+.|.|+||. ...++.++++.|.+.+ +
T Consensus 8 d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~-~~i~~aa~~aGl~y~~iPV~-~~~iT~~dV~~f~~Al-~ 84 (130)
T COG3453 8 DRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGF-AAIAAAAEAAGLTYTHIPVT-GGGITEADVEAFQRAL-D 84 (130)
T ss_pred cceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCCh-HHHHHHHHhcCCceEEeecC-CCCCCHHHHHHHHHHH-H
Confidence 47889999999999999999999999999996 234444 46788899999999999999 5678999999999999 5
Q ss_pred CCCCcEEEeCcCCCChHHHHHHHHHHHcCCCHHHHHH
Q 002584 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISG 381 (904)
Q Consensus 345 s~~~PVLVHCtAGKDRTGaLvaLlr~~lGV~~edIia 381 (904)
+..+|||.||++|. |+-++|.+-.+..|++.+++.+
T Consensus 85 eaegPVlayCrsGt-Rs~~ly~~~~~~~gm~~de~~a 120 (130)
T COG3453 85 EAEGPVLAYCRSGT-RSLNLYGLGELDGGMSRDEIEA 120 (130)
T ss_pred HhCCCEEeeecCCc-hHHHHHHHHHHhcCCCHHHHHH
Confidence 77899999999999 9999999998778999999865
No 31
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=99.54 E-value=6.1e-15 Score=156.69 Aligned_cols=168 Identities=14% Similarity=0.082 Sum_probs=125.8
Q ss_pred cccEEEcCCCCHhhHH--HHHHcCCcEEEEcCCCc-ccCcchhhhhHH-hhhcCCcEEEEEecCCCCCCCHHHHHHHHHH
Q 002584 266 EVTFCRGGQVTEEGLK--WLMEKGYKTIVDIRAER-VKDNFYEAAIDD-AILSGKVELIKIPVEVRTAPTMEQVEKFASL 341 (904)
Q Consensus 266 e~~LYRSGqpT~eDLa--~L~elGIKTVIDLRsee-~e~~~~~a~e~~-~~e~~GI~yIhIPV~d~~~Ps~e~I~aflei 341 (904)
....|||++|.+.+.. ++..++++++|+|+.+. .....+. .+.. .....++.....+.........+.+..++++
T Consensus 52 ~~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l 130 (249)
T COG2365 52 PIIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYT-DHLINWDKAAIIMFESYRSFPTREDAAERLVELLQL 130 (249)
T ss_pred ceeEcCCCCcccccCCccccccccccccccccccchhhhhhhh-hhhhhhccccchhhhhhccCccchhhHHHHHHHHHH
Confidence 4578999999887766 77888999999999722 0111111 1111 1234455556666665666778888888888
Q ss_pred HhcCCCCcEEEeCcCCCChHHHHHHHHHHHcCCCHHHHHHhhcccccccccchHHHHh-----------h----------
Q 002584 342 VSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDVLLKDSTRTRK-----------L---------- 400 (904)
Q Consensus 342 l~ds~~~PVLVHCtAGKDRTGaLvaLlr~~lGV~~edIiaDYLlsn~~l~~~~e~~~~-----------~---------- 400 (904)
+.+..++|||+||++||||||++++|++.++|++.+++++||+.+|.+......+... .
T Consensus 131 ~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (249)
T COG2365 131 LADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERRGILEYVSEKLLDDLEKKLQTFSLTLA 210 (249)
T ss_pred HhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhHHHHHHHhhccccchhcccchhHHHHH
Confidence 8666679999999999999999999999999999999999999999998866653322 0
Q ss_pred ---hccchhhhhhhhccchhhhhhhhccccccccccc
Q 002584 401 ---KASAGKFLLEEKYETVKENQDEIQTKNGVFGFGL 434 (904)
Q Consensus 401 ---~m~a~~~~l~~~~G~~e~~~~~~~~~~~~~ie~i 434 (904)
...+....++++||+.++|+.+..+++....+.+
T Consensus 211 ~~~y~~~a~~~~~~~~gs~~~~l~~~~~~~~~~~~~~ 247 (249)
T COG2365 211 SDEYLFAAFDELDEQYGSLDGYLADKFGLSADEWEPL 247 (249)
T ss_pred hHHHHHHHHHHHHHHHccccccchhhcCcCHHHHHhh
Confidence 1344556788999999999999888877655543
No 32
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=99.50 E-value=8.8e-14 Score=145.48 Aligned_cols=126 Identities=21% Similarity=0.256 Sum_probs=106.0
Q ss_pred CCCCceeeeecCCccccccCCCcccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEe
Q 002584 244 LFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIP 323 (904)
Q Consensus 244 ~i~Nfr~V~~~~~~~~~~~~~~e~~LYRSGqpT~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIP 323 (904)
..-||..|. ..|||||.|.+..+.+|+.+++|+||.|+++. |+.....+++..+|+++||-
T Consensus 56 pPlnFs~V~--------------~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~-----yp~~nl~f~~~~~Ik~~~i~ 116 (249)
T KOG1572|consen 56 PPLNFSMVD--------------NGLYRSGFPRPENFSFLKTLHLKSIISLCPEP-----YPEENLNFLESNGIKLYQIG 116 (249)
T ss_pred CCccccccc--------------cceeecCCCCccchHHHHHhhhheEEEecCCC-----CChHHHHHHHhcCceEEEEe
Confidence 346777775 38999999999999999999999999999975 33344558999999999999
Q ss_pred cCCCC----CCC----HHHHHHHHHHHhcCCCCcEEEeCcCCCChHHHHHHHHHHHcCCCHHHHHHhhccccc
Q 002584 324 VEVRT----APT----MEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSND 388 (904)
Q Consensus 324 V~d~~----~Ps----~e~I~afleil~ds~~~PVLVHCtAGKDRTGaLvaLlr~~lGV~~edIiaDYLlsn~ 388 (904)
|.... .|. .+.+...++++.+..++|+|+||+.||+|||++++|+|.+++|+..-++++|+.-..
T Consensus 117 ie~~k~~~k~P~~~~~~~~i~~~l~~lld~~N~P~Lihc~rGkhRtg~lVgclRklq~W~lssil~Ey~~fa~ 189 (249)
T KOG1572|consen 117 IEGEKDNKKEPFVNIPDHSIRKALKVLLDKRNYPILIHCKRGKHRTGCLVGCLRKLQNWSLSSILDEYLRFAG 189 (249)
T ss_pred cccccccccCCCCCChHHHHHHHHHHHhcccCCceEEecCCCCcchhhhHHHHHHHhccchhHHHHHHHHhcc
Confidence 98655 232 355667777777889999999999999999999999999999999999999985433
No 33
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.48 E-value=2.9e-13 Score=129.31 Aligned_cols=107 Identities=10% Similarity=0.138 Sum_probs=82.9
Q ss_pred ccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCC-CCCCHHHHHHHHHHHh--
Q 002584 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR-TAPTMEQVEKFASLVS-- 343 (904)
Q Consensus 267 ~~LYRSGqpT~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~-~~Ps~e~I~afleil~-- 343 (904)
+.||+|++++..++++|+++||++||||+.+. .. + ...+++|+|+|+.|. ..+..+.+....++++
T Consensus 6 ~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~--~~-~--------~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~ 74 (138)
T smart00195 6 PHLYLGSYSSALNLALLKKLGITHVINVTNEV--PN-L--------NKKGFTYLGVPILDNTETKISPYFPEAVEFIEDA 74 (138)
T ss_pred CCeEECChhHcCCHHHHHHcCCCEEEEccCCC--CC-C--------CCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHH
Confidence 47999999999999999999999999998865 11 1 246899999999974 3334455554444443
Q ss_pred cCCCCcEEEeCcCCCChHHHHHHHHHHH-cCCCHHHHHHhhc
Q 002584 344 NSSKKPLYLHSKEGVWRTYAMVSRWRQY-MARCASQISGQTI 384 (904)
Q Consensus 344 ds~~~PVLVHCtAGKDRTGaLvaLlr~~-lGV~~edIiaDYL 384 (904)
...++||||||.+|++|||+++++|+.. .|++.++|++..-
T Consensus 75 ~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~ 116 (138)
T smart00195 75 EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVK 116 (138)
T ss_pred hcCCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 2457899999999999999888777544 6999999988543
No 34
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.44 E-value=6.8e-13 Score=125.85 Aligned_cols=114 Identities=9% Similarity=0.170 Sum_probs=85.9
Q ss_pred cccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCC-HHHHHHHHHHHhc
Q 002584 266 EVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPT-MEQVEKFASLVSN 344 (904)
Q Consensus 266 e~~LYRSGqpT~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps-~e~I~afleil~d 344 (904)
.+.||+|++++..+++.|+++||++||||+++. +. ......|++|+|+|+.|+..+. ...+..+.+++..
T Consensus 6 ~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~-~~--------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~ 76 (139)
T cd00127 6 TPGLYLGSYPAASDKELLKKLGITHVLNVAKEV-PN--------ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDD 76 (139)
T ss_pred cCCeEECChhHhcCHHHHHHcCCCEEEEcccCC-CC--------cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHH
Confidence 358999999999999999999999999999976 21 1234579999999999876443 3444444444431
Q ss_pred --CCCCcEEEeCcCCCChHHHHHHHHH-HHcCCCHHHHHHhhccccc
Q 002584 345 --SSKKPLYLHSKEGVWRTYAMVSRWR-QYMARCASQISGQTITSND 388 (904)
Q Consensus 345 --s~~~PVLVHCtAGKDRTGaLvaLlr-~~lGV~~edIiaDYLlsn~ 388 (904)
..++||||||.+|.+|||++++.++ ...|++.++|++..-...+
T Consensus 77 ~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~ 123 (139)
T cd00127 77 AREKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRP 123 (139)
T ss_pred HHhcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCC
Confidence 3468999999999999997766654 3468999999876544333
No 35
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.28 E-value=2.3e-11 Score=128.59 Aligned_cols=105 Identities=15% Similarity=0.138 Sum_probs=86.9
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc--CCCCcEEEeC
Q 002584 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN--SSKKPLYLHS 354 (904)
Q Consensus 277 ~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~d--s~~~PVLVHC 354 (904)
+..++.|++.||++||.+.... |. .+.++..||+++++|+.|...|+.+++.+|+++++. ..+++|+|||
T Consensus 106 ~~yl~eLk~~gV~~lVrlcE~~-----Yd---~~~~~~~GI~~~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC 177 (241)
T PTZ00393 106 PLYIKEMKNYNVTDLVRTCERT-----YN---DGEITSAGINVHELIFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHC 177 (241)
T ss_pred HHHHHHHHHcCCCEEEECCCCC-----CC---HHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence 5778999999999999997643 21 124678899999999999999999999999988752 3577999999
Q ss_pred cCCCChHHHHHHHHHHHcCCCHHHHHHhhcccccc
Q 002584 355 KEGVWRTYAMVSRWRQYMARCASQISGQTITSNDV 389 (904)
Q Consensus 355 tAGKDRTGaLvaLlr~~lGV~~edIiaDYLlsn~~ 389 (904)
.+|.+|||+++++|+...|+++++|++-.=...+.
T Consensus 178 ~AGlGRTGtl~AayLI~~GmspeeAI~~VR~~RPg 212 (241)
T PTZ00393 178 VAGLGRAPVLASIVLIEFGMDPIDAIVFIRDRRKG 212 (241)
T ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHCCC
Confidence 99999999999998877899999998765444443
No 36
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.25 E-value=6.2e-11 Score=119.28 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=86.3
Q ss_pred cEEEcCCCCH----hhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHh
Q 002584 268 TFCRGGQVTE----EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS 343 (904)
Q Consensus 268 ~LYRSGqpT~----eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ 343 (904)
+|.-...|++ .+++.|+++||+.||++..+. |. .+.++..|+.+.++|+.|...|+.+.+..|++++.
T Consensus 17 r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~-----~~---~~~~~~~gi~~~~~p~~D~~~P~~~~i~~~~~~i~ 88 (166)
T PTZ00242 17 KFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPT-----YD---AELLEKNGIEVHDWPFDDGAPPPKAVIDNWLRLLD 88 (166)
T ss_pred EEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCC-----CC---HHHHHHCCCEEEecCCCCCCCCCHHHHHHHHHHHH
Confidence 3444444544 667999999999999996543 21 12456789999999999888999988888887764
Q ss_pred c------CCCCcEEEeCcCCCChHHHHHHHHHHHc-CCCHHHHHHhhccccc
Q 002584 344 N------SSKKPLYLHSKEGVWRTYAMVSRWRQYM-ARCASQISGQTITSND 388 (904)
Q Consensus 344 d------s~~~PVLVHCtAGKDRTGaLvaLlr~~l-GV~~edIiaDYLlsn~ 388 (904)
. ..++||+|||.+|.+|||+++++++... |++.++|++..-...+
T Consensus 89 ~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~ 140 (166)
T PTZ00242 89 QEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRK 140 (166)
T ss_pred HHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC
Confidence 2 3478999999999999999988887554 4999999886544333
No 37
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.21 E-value=2.2e-11 Score=115.34 Aligned_cols=107 Identities=16% Similarity=0.310 Sum_probs=82.3
Q ss_pred EEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCC-CCCCCHHHHHHHHHHHhc--C
Q 002584 269 FCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEV-RTAPTMEQVEKFASLVSN--S 345 (904)
Q Consensus 269 LYRSGqpT~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d-~~~Ps~e~I~afleil~d--s 345 (904)
||.|+.+... .++|+++||++|||++.+. +.+ + ..+..+++++++|+.| ...+..+.+..+.+++.+ .
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~-~~~-~------~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~ 71 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEEC-PNP-Y------FYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAIS 71 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSS-STS-H------HHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHH
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCC-cCc-h------hcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhc
Confidence 6889988888 9999999999999999875 111 1 2456799999999987 344444555555555542 4
Q ss_pred CCCcEEEeCcCCCChHHHHHHHHHHH-cCCCHHHHHHhhc
Q 002584 346 SKKPLYLHSKEGVWRTYAMVSRWRQY-MARCASQISGQTI 384 (904)
Q Consensus 346 ~~~PVLVHCtAGKDRTGaLvaLlr~~-lGV~~edIiaDYL 384 (904)
.+++|||||.+|.+|||++++.|+.. .|++.++|++-.-
T Consensus 72 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~ 111 (133)
T PF00782_consen 72 EGGKVLVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVR 111 (133)
T ss_dssp TTSEEEEEESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred ccceeEEEeCCCcccchHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57899999999999999888877655 6999999987443
No 38
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.20 E-value=3.5e-11 Score=121.20 Aligned_cols=103 Identities=13% Similarity=0.187 Sum_probs=64.1
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchh-hhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc--CCCCcEEEe
Q 002584 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYE-AAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN--SSKKPLYLH 353 (904)
Q Consensus 277 ~eDLa~L~elGIKTVIDLRsee~e~~~~~-a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~d--s~~~PVLVH 353 (904)
+.|+++|+.+|++.||.|.+.. |-..+. ....+.++..||.|+|+||.|...|+.+...++.+.+.. ..++.|+||
T Consensus 61 ~~DL~~Lk~~G~~~Vvtl~~~~-EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vH 139 (168)
T PF05706_consen 61 QADLERLKDWGAQDVVTLLTDH-ELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVH 139 (168)
T ss_dssp HHHHHHHHHTT--EEEE-S-HH-HHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHHCCCCEEEEeCcHH-HHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 6789999999999999998885 211111 234567889999999999999999987655444333221 246789999
Q ss_pred CcCCCChHHHHHHHHHHHcC--CCHHHHH
Q 002584 354 SKEGVWRTYAMVSRWRQYMA--RCASQIS 380 (904)
Q Consensus 354 CtAGKDRTGaLvaLlr~~lG--V~~edIi 380 (904)
|..|.+|||+++++++..+| +++++||
T Consensus 140 C~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 140 CRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp -SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 99999999999999887765 8888875
No 39
>PRK12361 hypothetical protein; Provisional
Probab=99.13 E-value=2.7e-10 Score=133.11 Aligned_cols=120 Identities=14% Similarity=0.211 Sum_probs=94.5
Q ss_pred ccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc--
Q 002584 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN-- 344 (904)
Q Consensus 267 ~~LYRSGqpT~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~d-- 344 (904)
+.||.|+++++.|++.|++.||++||||+.+. +...+ .....+++|+|+|+.|...|+.+++.+..++++.
T Consensus 100 ~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~-~~~~~------~~~~~~i~yl~iPi~D~~~p~~~~l~~a~~~i~~~~ 172 (547)
T PRK12361 100 ENLYLGCRLFPADLEKLKSNKITAILDVTAEF-DGLDW------SLTEEDIDYLNIPILDHSVPTLAQLNQAINWIHRQV 172 (547)
T ss_pred CcEEECCCCCcccHHHHHHcCCCEEEEccccc-ccccc------cccccCceEEEeecCCCCCCcHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999653 11111 1223689999999999888999988888877753
Q ss_pred CCCCcEEEeCcCCCChHHHHHHHHHHH--cCCCHHHHHHhhcccccccccc
Q 002584 345 SSKKPLYLHSKEGVWRTYAMVSRWRQY--MARCASQISGQTITSNDVLLKD 393 (904)
Q Consensus 345 s~~~PVLVHCtAGKDRTGaLvaLlr~~--lGV~~edIiaDYLlsn~~l~~~ 393 (904)
..+++|||||.+|.+|++++++.|+.. .+++.++|++.--...|...-+
T Consensus 173 ~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n 223 (547)
T PRK12361 173 RANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLN 223 (547)
T ss_pred HCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCC
Confidence 356899999999999999888888764 3699999988755444444433
No 40
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=98.76 E-value=2.6e-08 Score=103.40 Aligned_cols=94 Identities=17% Similarity=0.319 Sum_probs=78.2
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcC-CCCcEEEeCcCCC
Q 002584 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNS-SKKPLYLHSKEGV 358 (904)
Q Consensus 280 La~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds-~~~PVLVHCtAGK 358 (904)
+..++...+++|+-|...- |+ .+.....||.++++|+.|...|+++.+.+|+++++.. ..+.+.|||++|-
T Consensus 87 ~~~~~~~~v~s~vrln~~~-----yd---~~~f~~~Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~~g~iaVHCkaGl 158 (225)
T KOG1720|consen 87 IQYFKNNNVTSIVRLNKRL-----YD---AKRFTDAGIDHHDLFFADGSTPTDAIVKEFVKIVENAEKGGKIAVHCKAGL 158 (225)
T ss_pred HHHhhhcccceEEEcCCCC-----CC---hHHhcccCceeeeeecCCCCCCCHHHHHHHHHHHHHHHhcCeEEEEeccCC
Confidence 4566677999999996543 22 2346778999999999999999999999999998632 2589999999999
Q ss_pred ChHHHHHHHHHHH-cCCCHHHHHH
Q 002584 359 WRTYAMVSRWRQY-MARCASQISG 381 (904)
Q Consensus 359 DRTGaLvaLlr~~-lGV~~edIia 381 (904)
+|||+++|+|+.+ .|+++.|+|+
T Consensus 159 GRTG~liAc~lmy~~g~ta~eaI~ 182 (225)
T KOG1720|consen 159 GRTGTLIACYLMYEYGMTAGEAIA 182 (225)
T ss_pred CchhHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999877 5999999975
No 41
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.29 E-value=1.4e-06 Score=86.44 Aligned_cols=61 Identities=20% Similarity=0.357 Sum_probs=45.9
Q ss_pred hHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcC-CCCcEEEeCcCCCChHHHHHHHH
Q 002584 308 IDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNS-SKKPLYLHSKEGVWRTYAMVSRW 368 (904)
Q Consensus 308 e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds-~~~PVLVHCtAGKDRTGaLvaLl 368 (904)
+...++..|+.|++||+.+...|.++.+++|++++... .+..++|||.+|++||.++..++
T Consensus 84 e~~~~~~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~ 145 (149)
T PF14566_consen 84 EEELVEGNGLRYYRIPITDHQAPDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMY 145 (149)
T ss_dssp HHHHHHHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEeCCCcCCCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 45678899999999999999999999999999999753 34679999999999999655554
No 42
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=98.27 E-value=2e-06 Score=92.77 Aligned_cols=109 Identities=26% Similarity=0.279 Sum_probs=75.1
Q ss_pred CEEEEEecC--Ch-hHHHHHHHHHHHHhcCCCeEEEEcCChhh-hhhcCCCCccceeeeccCcccccCCCcEEEEEcCCc
Q 002584 691 RTVLVLKKP--GP-ALMEEAKEVASFLYHQEKMNILVEPDVHD-IFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (904)
Q Consensus 691 k~VlIv~K~--~~-~~~~~a~el~~~L~~~~gi~V~ve~~v~~-~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDG 766 (904)
++++||.++ +. ...+.+.++.++|.+ .++++.+...... .... . . .......+|+||++||||
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~-~~~~~~~~~t~~~~~~~~---------~-~--~~~~~~~~d~ivv~GGDG 68 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLRE-EGMEIHVRVTWEKGDAAR---------Y-V--EEARKFGVDTVIAGGGDG 68 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHH-CCCEEEEEEecCcccHHH---------H-H--HHHHhcCCCEEEEECCCC
Confidence 578888888 43 345667788888854 5666554322111 0000 0 0 011234589999999999
Q ss_pred hHHHHHHhcCC-CCCcEEE-EeCCCCcccCC-CC-cccHHHHHHHHHcCC
Q 002584 767 VILHASNLFRG-AVPPVIS-FNLGSLGFLTS-HP-FEDYRQDLRQVIYGN 812 (904)
Q Consensus 767 TlL~Aar~~~~-~~~PVLG-IN~GsLGFLt~-~~-~ed~~~~L~~il~G~ 812 (904)
|+..+++.+.. ...|.+| |+.|+.++|+. +. ++++.++++.+.+|+
T Consensus 69 Tl~~v~~~l~~~~~~~~lgiiP~Gt~N~~a~~l~i~~~~~~~~~~l~~~~ 118 (293)
T TIGR00147 69 TINEVVNALIQLDDIPALGILPLGTANDFARSLGIPEDLDKAAKLVIAGD 118 (293)
T ss_pred hHHHHHHHHhcCCCCCcEEEEcCcCHHHHHHHcCCCCCHHHHHHHHHcCC
Confidence 99999997754 3556777 89999999997 66 578888999988876
No 43
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=98.20 E-value=6.1e-06 Score=82.75 Aligned_cols=99 Identities=17% Similarity=0.245 Sum_probs=78.2
Q ss_pred hhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCC-CCCHHHHHHHHHHHhc--CCCCcEEEeC
Q 002584 278 EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRT-APTMEQVEKFASLVSN--SSKKPLYLHS 354 (904)
Q Consensus 278 eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~-~Ps~e~I~afleil~d--s~~~PVLVHC 354 (904)
.+.+.++++|+.-||.+..+. |- ..+ -..-+..||+++.+|..|.. .|+.+.+.+..+++.. ...+-++|||
T Consensus 42 ~~~~~i~ke~v~gvv~~ne~y-E~-~a~---s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHC 116 (183)
T KOG1719|consen 42 MDVPLIKKENVGGVVTLNEPY-EL-LAP---SNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHC 116 (183)
T ss_pred ccchHHHhcCCCeEEEeCCch-hh-hhh---hHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEe
Confidence 567789999999999998774 21 111 11357789999999998754 6889999888887752 4578899999
Q ss_pred cCCCChHHHHHHHHHHH-cCCCHHHHHH
Q 002584 355 KEGVWRTYAMVSRWRQY-MARCASQISG 381 (904)
Q Consensus 355 tAGKDRTGaLvaLlr~~-lGV~~edIia 381 (904)
+||..|+.++++|++.- -+|++++|.+
T Consensus 117 KAGRtRSaTvV~cYLmq~~~wtpe~A~~ 144 (183)
T KOG1719|consen 117 KAGRTRSATVVACYLMQHKNWTPEAAVE 144 (183)
T ss_pred cCCCccchhhhhhhhhhhcCCCHHHHHH
Confidence 99999999999998643 5899999976
No 44
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=98.18 E-value=1.1e-05 Score=79.34 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=82.1
Q ss_pred EcCCCCHhh----HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHh---
Q 002584 271 RGGQVTEEG----LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS--- 343 (904)
Q Consensus 271 RSGqpT~eD----La~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~--- 343 (904)
..-.|+... ++.|++.|++|||-..... |. ...++..||..+..|.+|...|....++.+++++.
T Consensus 21 IThnPtnaTln~fieELkKygvttvVRVCe~T-----Yd---t~~lek~GI~Vldw~f~dg~ppp~qvv~~w~~l~~~~f 92 (173)
T KOG2836|consen 21 ITHNPTNATLNKFIEELKKYGVTTVVRVCEPT-----YD---TTPLEKEGITVLDWPFDDGAPPPNQVVDDWLSLVKTKF 92 (173)
T ss_pred EecCCCchhHHHHHHHHHhcCCeEEEEecccc-----cC---CchhhhcCceEeecccccCCCCchHHHHHHHHHHHHHH
Confidence 344555544 4678889999999998875 21 12467899999999999888888888888877653
Q ss_pred -cCCCCcEEEeCcCCCChHHHHHHHHHHHcCCCHHHHHH
Q 002584 344 -NSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISG 381 (904)
Q Consensus 344 -ds~~~PVLVHCtAGKDRTGaLvaLlr~~lGV~~edIia 381 (904)
+..+.-|.|||-+|-+|+-+++++.+...|+..++|++
T Consensus 93 ~e~p~~cvavhcvaglgrapvlvalalie~gmkyedave 131 (173)
T KOG2836|consen 93 REEPGCCVAVHCVAGLGRAPVLVALALIEAGMKYEDAVE 131 (173)
T ss_pred hhCCCCeEEEEeecccCcchHHHHHHHHHccccHHHHHH
Confidence 34556799999999999999999999889999999864
No 45
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.15 E-value=8e-06 Score=83.25 Aligned_cols=77 Identities=14% Similarity=0.276 Sum_probs=59.5
Q ss_pred hhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc--CCCCcEEEeCcCCCChHHHHHHHHHHH--cCCCHHHHHHhhcccc
Q 002584 312 ILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN--SSKKPLYLHSKEGVWRTYAMVSRWRQY--MARCASQISGQTITSN 387 (904)
Q Consensus 312 ~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~d--s~~~PVLVHCtAGKDRTGaLvaLlr~~--lGV~~edIiaDYLlsn 387 (904)
.+..|+.++++|+.|...|+.+++.++.+++.+ ..++.|+|||.+|.+|||++++.|+.+ .+...++++.-+....
T Consensus 68 ~~~~~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r 147 (180)
T COG2453 68 EENDGIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRR 147 (180)
T ss_pred eccCCceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcC
Confidence 466799999999999999999999888887753 345699999999999999777754433 3466777766555544
Q ss_pred c
Q 002584 388 D 388 (904)
Q Consensus 388 ~ 388 (904)
+
T Consensus 148 ~ 148 (180)
T COG2453 148 P 148 (180)
T ss_pred C
Confidence 4
No 46
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.96 E-value=3.7e-05 Score=83.82 Aligned_cols=116 Identities=13% Similarity=0.204 Sum_probs=83.2
Q ss_pred cccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCH----HHHHHHHHH
Q 002584 266 EVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTM----EQVEKFASL 341 (904)
Q Consensus 266 e~~LYRSGqpT~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~----e~I~aflei 341 (904)
.+.+|-|.+..+.+...|+++||+.|+++.... ...+ .....+++|.++|+.|....+. +..-.|++.
T Consensus 79 ~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~--~~~~------~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~ 150 (285)
T KOG1716|consen 79 LPNLYLGSQGVASDPDLLKKLGITHVLNVSSSC--PNPR------FLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEK 150 (285)
T ss_pred cCCceecCcccccchhhHHHcCCCEEEEecccC--Cccc------cccccCceEEeccccCCccccHHHHHHHHHHHHHH
Confidence 458889999899999999999999999998764 1110 1223489999999997554432 233345555
Q ss_pred HhcCCCCcEEEeCcCCCChHHHH-HHHHHHHcCCCHHHHHHhhccccccc
Q 002584 342 VSNSSKKPLYLHSKEGVWRTYAM-VSRWRQYMARCASQISGQTITSNDVL 390 (904)
Q Consensus 342 l~ds~~~PVLVHCtAGKDRTGaL-vaLlr~~lGV~~edIiaDYLlsn~~l 390 (904)
.. ..++-|||||.+|..|+-++ +|.+....|++.++|++-.-..-+..
T Consensus 151 a~-~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i 199 (285)
T KOG1716|consen 151 AR-EKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPII 199 (285)
T ss_pred HH-hCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 53 45789999999999999944 45555668999999976554443333
No 47
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=97.80 E-value=3.3e-05 Score=69.05 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=37.4
Q ss_pred EEEEecCCCCCCCH-HHHHHHHHHHhcC-----CCCcEEEeCcCCCChHHHHHHHHHHH
Q 002584 319 LIKIPVEVRTAPTM-EQVEKFASLVSNS-----SKKPLYLHSKEGVWRTYAMVSRWRQY 371 (904)
Q Consensus 319 yIhIPV~d~~~Ps~-e~I~afleil~ds-----~~~PVLVHCtAGKDRTGaLvaLlr~~ 371 (904)
+.+.+.++...|.. +.+..|+..+... .++|++|||.+|++|||++++++..+
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~ 63 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILL 63 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHH
Confidence 44455555555654 6777777665431 26799999999999999888877653
No 48
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=97.80 E-value=3.3e-05 Score=69.05 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=37.4
Q ss_pred EEEEecCCCCCCCH-HHHHHHHHHHhcC-----CCCcEEEeCcCCCChHHHHHHHHHHH
Q 002584 319 LIKIPVEVRTAPTM-EQVEKFASLVSNS-----SKKPLYLHSKEGVWRTYAMVSRWRQY 371 (904)
Q Consensus 319 yIhIPV~d~~~Ps~-e~I~afleil~ds-----~~~PVLVHCtAGKDRTGaLvaLlr~~ 371 (904)
+.+.+.++...|.. +.+..|+..+... .++|++|||.+|++|||++++++..+
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~ 63 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILL 63 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHH
Confidence 44455555555654 6777777665431 26799999999999999888877653
No 49
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.75 E-value=0.00018 Score=73.43 Aligned_cols=102 Identities=13% Similarity=0.204 Sum_probs=72.7
Q ss_pred ccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCC-HHHHHHHHHHHh--
Q 002584 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPT-MEQVEKFASLVS-- 343 (904)
Q Consensus 267 ~~LYRSGqpT~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps-~e~I~afleil~-- 343 (904)
+.||-|.-....+...|++.||..|||-..+. ... -..+++|+.+|+.|..... .+.++...+.|.
T Consensus 22 ~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~-pn~----------~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v 90 (198)
T KOG1718|consen 22 PSLFLSNGVAANDKLLLKKRKITCIINATTEV-PNT----------SLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSV 90 (198)
T ss_pred cceeEeccccccCHHHHHhcCceEEEEcccCC-CCc----------cCCCceeEEEEcccCCcchhhhhhhHHHHHHHHH
Confidence 57888866677778889999999999998874 122 2358999999998643321 233333333332
Q ss_pred cCCCCcEEEeCcCCCChHHHHHHHH-HHHcCCCHHHH
Q 002584 344 NSSKKPLYLHSKEGVWRTYAMVSRW-RQYMARCASQI 379 (904)
Q Consensus 344 ds~~~PVLVHCtAGKDRTGaLvaLl-r~~lGV~~edI 379 (904)
....+..|+||.||..|+..+++.+ .++.+++..||
T Consensus 91 ~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreA 127 (198)
T KOG1718|consen 91 IMRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREA 127 (198)
T ss_pred HhcCCcEEEEEccccchhHHHHHHHHHHHccchHHHH
Confidence 2457899999999999999766554 46678888877
No 50
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.72 E-value=0.00012 Score=79.01 Aligned_cols=106 Identities=15% Similarity=0.224 Sum_probs=74.0
Q ss_pred cccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHH-HHHHHHHHhc
Q 002584 266 EVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQ-VEKFASLVSN 344 (904)
Q Consensus 266 e~~LYRSGqpT~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~-I~afleil~d 344 (904)
.+-||-|+.-+...++-|+++||++|||..+.- -..+ -+...+.|..||+.|...-...+ +.+.+.+|++
T Consensus 176 lp~LYLg~a~ds~NldvLkk~gI~yviNVTpnl--pn~f-------e~~g~f~YkqipisDh~Sqnls~ffpEAIsfIde 246 (343)
T KOG1717|consen 176 LPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNL--PNNF-------ENNGEFIYKQIPISDHASQNLSQFFPEAISFIDE 246 (343)
T ss_pred ccchhcccccccccHHHHHhcCceEEEecCCCC--cchh-------hcCCceeEEeeeccchhhhhhhhhhHHHHHHHHH
Confidence 457889998888999999999999999998763 1111 24467899999999754322221 2334455543
Q ss_pred --CCCCcEEEeCcCCCChHHHHHHHH-HHHcCCCHHHHH
Q 002584 345 --SSKKPLYLHSKEGVWRTYAMVSRW-RQYMARCASQIS 380 (904)
Q Consensus 345 --s~~~PVLVHCtAGKDRTGaLvaLl-r~~lGV~~edIi 380 (904)
..+-.|||||-+|..|+-++...| .+-+..+..+|.
T Consensus 247 Arsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAy 285 (343)
T KOG1717|consen 247 ARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAY 285 (343)
T ss_pred hhccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHH
Confidence 345689999999999999655444 344567777664
No 51
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=96.93 E-value=0.0016 Score=67.91 Aligned_cols=50 Identities=18% Similarity=0.117 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcC----CCCcEEEeCcCCCChHHHHHHHHHHH------cCCCHHHHHHh
Q 002584 333 EQVEKFASLVSNS----SKKPLYLHSKEGVWRTYAMVSRWRQY------MARCASQISGQ 382 (904)
Q Consensus 333 e~I~afleil~ds----~~~PVLVHCtAGKDRTGaLvaLlr~~------lGV~~edIiaD 382 (904)
+++..|+..+... ..+|++|||.+|.+|||+++++...+ ..++..+++..
T Consensus 148 ~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~ 207 (231)
T cd00047 148 DSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKE 207 (231)
T ss_pred HHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 6677777766433 36799999999999999888776432 12555555443
No 52
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=96.65 E-value=0.0043 Score=65.94 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHhcC---CCCcEEEeCcCCCChHHHHHHHHH
Q 002584 331 TMEQVEKFASLVSNS---SKKPLYLHSKEGVWRTYAMVSRWR 369 (904)
Q Consensus 331 s~e~I~afleil~ds---~~~PVLVHCtAGKDRTGaLvaLlr 369 (904)
+.+.+.+|+..+... ..+|++|||.+|.+|||+++++..
T Consensus 174 ~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~ 215 (258)
T smart00194 174 SPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDI 215 (258)
T ss_pred CHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHH
Confidence 456667777766432 167999999999999998887754
No 53
>PLN02727 NAD kinase
Probab=96.57 E-value=0.0035 Score=77.39 Aligned_cols=198 Identities=9% Similarity=-0.073 Sum_probs=117.2
Q ss_pred hhccchhhhhhhhccchhhhhhhhcccccccccccccchhccccCCCcccc-cccccccccchhhccccC-------cc-
Q 002584 400 LKASAGKFLLEEKYETVKENQDEIQTKNGVFGFGLSVDMDKRNQSNGAYKG-LSSVEGVESAKEVDTAVG-------SL- 470 (904)
Q Consensus 400 ~~m~a~~~~l~~~~G~~e~~~~~~~~~~~~~ie~ir~nl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~- 470 (904)
.++..++......+|.- +...++.++|+.|.|++..|..++++.+ .+...|+...-...-+-+ -.
T Consensus 391 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (986)
T PLN02727 391 GSLQETNDKDSSSNGSE------SGESCSIKDETGRSNLEAYNSLPSDQSTQQGEMVGTGVESQSNFNMESDPLKAQVPP 464 (986)
T ss_pred CccccccccccccCccc------cccccccccccccccccccccccccccccccccccccccccceeeeecCcccccCCC
Confidence 44455566666655542 4566889999999999999999999998 666666543321110000 00
Q ss_pred --------ccccccc--cCCccccCCCCcccchHHHhhhhhcc------ccCCCccccccccccccCCccccCCC-Cccc
Q 002584 471 --------GTTFSKE--TDPFKAQVPPSNFVSKKEMSRFFRSK------TTSPPRYFNYQSKRMDVLPSEIVSSG-PVSG 533 (904)
Q Consensus 471 --------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 533 (904)
.+.|.|. .-|----.+....|++--..++-+.. -+-|.+-+---+++...+-+++.+.+ +.++
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~sng~~s~kn~s~d~qss~ 544 (986)
T PLN02727 465 CDVFSKKEMSKFFRSKKIYPPTYLNYRRKGFEKLPVPQFTGVTQGSKIDDTDSISRLVETGRSNGLVSEKNSSPKYQSSE 544 (986)
T ss_pred cccccHHHHHHHHhhcccCCcccccchhcccccCCccccccccchhhccCccchhhhhhccCCCccccccccCccccchh
Confidence 0112111 11111111111222221111110000 00000100001112223335677777 8889
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCcCCccccCCCcccccccccccccccccccccccccc
Q 002584 534 VAETRYSQWSLSGNNLSPNHQNLPAGSEKSSDNNGYVSAGCSTNGFDRGDRSSMTEANLLTSVTKNLDEQVISSSVR 610 (904)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (904)
+++.++|||++++++++++.|++...+.+++||+++++|++..+.... ++.+ +.++++|.+.++.+++..
T Consensus 545 ~~~~k~sNGss~~s~~s~s~~Ss~~~~~~~~ng~~stsv~~nl~~~v~-----s~s~--res~s~Ng~a~vgssd~~ 614 (986)
T PLN02727 545 FDNGKSSNGSSFASDGSLSVASSITNGNPSNNGASSSTVSDNLERSVA-----SVSV--RESQRSNGKASLGSSDDE 614 (986)
T ss_pred hccccCCCCccccccCcccccccccCCccccCCCccccccCCCccccc-----cccc--ccccccCCccccccccCc
Confidence 999999999999999999999999999999999999999988887765 3333 333678888888887765
No 54
>PRK13057 putative lipid kinase; Reviewed
Probab=96.51 E-value=0.0053 Score=66.59 Aligned_cols=60 Identities=25% Similarity=0.268 Sum_probs=48.4
Q ss_pred cCCCcEEEEEcCCchHHHHHHhcCCCCCcEEEEeCCCCcccCC-CC-cccHHHHHHHHHcCC
Q 002584 753 HERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTS-HP-FEDYRQDLRQVIYGN 812 (904)
Q Consensus 753 ~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~GsLGFLt~-~~-~ed~~~~L~~il~G~ 812 (904)
...+|.||++|||||+-.+++.+...++|+.-|-+|+-.-++. +. +.+++++++.+..|.
T Consensus 48 ~~~~d~iiv~GGDGTv~~v~~~l~~~~~~lgiiP~GT~Ndfar~Lg~~~~~~~a~~~i~~~~ 109 (287)
T PRK13057 48 ADGVDLVIVGGGDGTLNAAAPALVETGLPLGILPLGTANDLARTLGIPLDLEAAARVIATGQ 109 (287)
T ss_pred HcCCCEEEEECchHHHHHHHHHHhcCCCcEEEECCCCccHHHHHcCCCCCHHHHHHHHHcCC
Confidence 3567999999999999999998877888988888997666653 22 457888999888775
No 55
>PRK00861 putative lipid kinase; Reviewed
Probab=96.40 E-value=0.018 Score=62.94 Aligned_cols=107 Identities=14% Similarity=0.240 Sum_probs=65.3
Q ss_pred CEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEEcCChh--hhhhcCCCCccceeeeccCcccccCCCcEEEEEcCC
Q 002584 691 RTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILVEPDVH--DIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (904)
Q Consensus 691 k~VlIv~K~~~---~~~~~a~el~~~L~~~~gi~V~ve~~v~--~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGD 765 (904)
++++||..|.. .....+.++...|.+...+.++.-.... ..+. .+...+.+|+||++|||
T Consensus 3 ~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~~~~~~~~t~~~~~a~~~a---------------~~~~~~~~d~vv~~GGD 67 (300)
T PRK00861 3 RSACLIFNPVAGQGNPEVDLALIRAILEPEMDLDIYLTTPEIGADQLA---------------QEAIERGAELIIASGGD 67 (300)
T ss_pred ceEEEEECCCCCCCchhhhHHHHHHHHHhcCceEEEEccCCCCHHHHH---------------HHHHhcCCCEEEEECCh
Confidence 57888888763 2334456777777542233343322111 1110 01123567999999999
Q ss_pred chHHHHHHhcCCCCCcEEEEeCCCCcccC-CCC-cccHHHHHHHHHcCC
Q 002584 766 GVILHASNLFRGAVPPVISFNLGSLGFLT-SHP-FEDYRQDLRQVIYGN 812 (904)
Q Consensus 766 GTlL~Aar~~~~~~~PVLGIN~GsLGFLt-~~~-~ed~~~~L~~il~G~ 812 (904)
||+=.++..+...++|+-=|-.|+-.=++ .+. +.++.++++.+.+|.
T Consensus 68 GTl~evv~~l~~~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~ 116 (300)
T PRK00861 68 GTLSAVAGALIGTDIPLGIIPRGTANAFAAALGIPDTIEEACRTILQGK 116 (300)
T ss_pred HHHHHHHHHHhcCCCcEEEEcCCchhHHHHHcCCCCCHHHHHHHHHcCC
Confidence 99999999887777776556677533322 222 346788899888876
No 56
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=96.32 E-value=0.00074 Score=58.36 Aligned_cols=40 Identities=15% Similarity=-0.032 Sum_probs=34.5
Q ss_pred hhhccchhhhhhhhccchhhhhhhhcccccccccccccch
Q 002584 399 KLKASAGKFLLEEKYETVKENQDEIQTKNGVFGFGLSVDM 438 (904)
Q Consensus 399 ~~~m~a~~~~l~~~~G~~e~~~~~~~~~~~~~ie~ir~nl 438 (904)
.+.|.+++..|+++|||+++|+++.+|+++++++.+|+++
T Consensus 28 ~e~l~~~l~~i~~~yGs~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 28 PEYLEAALDAIDERYGSVENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHT-T--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHcCCCCHHHHHHHHHHc
Confidence 4688999999999999999999999999999999999875
No 57
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.22 E-value=0.0035 Score=68.03 Aligned_cols=41 Identities=20% Similarity=0.351 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHhcC--CCCcEEEeCcCCCChHHHHHHHH
Q 002584 328 TAPTMEQVEKFASLVSNS--SKKPLYLHSKEGVWRTYAMVSRW 368 (904)
Q Consensus 328 ~~Ps~e~I~afleil~ds--~~~PVLVHCtAGKDRTGaLvaLl 368 (904)
..|+...+.+++.-+.+. ..+|++|||.||.||||+++++-
T Consensus 197 ~~p~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD 239 (302)
T COG5599 197 NVPDIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALD 239 (302)
T ss_pred CCcCHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHH
Confidence 344444445555555444 56899999999999999887764
No 58
>PRK11914 diacylglycerol kinase; Reviewed
Probab=96.16 E-value=0.032 Score=61.05 Aligned_cols=109 Identities=24% Similarity=0.283 Sum_probs=69.2
Q ss_pred CCEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEE--cCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcC
Q 002584 690 PRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILV--EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG 764 (904)
Q Consensus 690 pk~VlIv~K~~~---~~~~~a~el~~~L~~~~gi~V~v--e~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGG 764 (904)
+++++||..|.. ...+.+.++.+.|.+ .++++.+ .....+ ...+ . .....+.+|+||++||
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~-~g~~~~~~~t~~~~~-~~~~-----a-------~~~~~~~~d~vvv~GG 73 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHH-RGVDVVEIVGTDAHD-ARHL-----V-------AAALAKGTDALVVVGG 73 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHH-cCCeEEEEEeCCHHH-HHHH-----H-------HHHHhcCCCEEEEECC
Confidence 478888888763 345667788888854 5665432 222111 1000 0 0112345799999999
Q ss_pred CchHHHHHHhcCCCCCcEEEEeCCCCcccC-CCC--cccHHHHHHHHHcCC
Q 002584 765 DGVILHASNLFRGAVPPVISFNLGSLGFLT-SHP--FEDYRQDLRQVIYGN 812 (904)
Q Consensus 765 DGTlL~Aar~~~~~~~PVLGIN~GsLGFLt-~~~--~ed~~~~L~~il~G~ 812 (904)
|||+=.++..+...++|+-=|-.|+-.=++ .+. .++.+++++.+..|.
T Consensus 74 DGTi~evv~~l~~~~~~lgiiP~GT~NdfAr~lg~~~~~~~~a~~~i~~g~ 124 (306)
T PRK11914 74 DGVISNALQVLAGTDIPLGIIPAGTGNDHAREFGIPTGDPEAAADVIVDGW 124 (306)
T ss_pred chHHHHHhHHhccCCCcEEEEeCCCcchhHHHcCCCCCCHHHHHHHHHcCC
Confidence 999999998877777887666777644333 233 246788888888876
No 59
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=96.05 E-value=0.0076 Score=69.85 Aligned_cols=98 Identities=18% Similarity=0.252 Sum_probs=64.9
Q ss_pred HHHHHHc--CCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHH----HHhcCCCCcEEEe
Q 002584 280 LKWLMEK--GYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFAS----LVSNSSKKPLYLH 353 (904)
Q Consensus 280 La~L~el--GIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afle----il~ds~~~PVLVH 353 (904)
..+|... |==.|.||+.+. .|. ...-.=+...+|..|...|..+.+..|-+ ++......-+.||
T Consensus 44 ~~fL~s~H~~~y~vyNL~~er----~yd------~~~f~g~V~~~~~~Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvH 113 (434)
T KOG2283|consen 44 VLFLDSKHKDHYKVYNLSSER----LYD------PSRFHGRVARFGFDDHNPPPLELLCPFCKSMDNWLSEDPKNVVVVH 113 (434)
T ss_pred HHHHhhccCCceEEEecCccc----cCC------ccccccceeecCCCCCCCCcHHHHHHHHHCHHHHHhcCccceEEEE
Confidence 3455544 445699999753 121 01112245558999999999998877654 4543444568899
Q ss_pred CcCCCChHHHHHHHHHHHcC--CCHHHHHHhhcccc
Q 002584 354 SKEGVWRTYAMVSRWRQYMA--RCASQISGQTITSN 387 (904)
Q Consensus 354 CtAGKDRTGaLvaLlr~~lG--V~~edIiaDYLlsn 387 (904)
|++||+|||+|+..++.+.| .++++|+.-|....
T Consensus 114 Ck~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR 149 (434)
T KOG2283|consen 114 CKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKR 149 (434)
T ss_pred ccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhh
Confidence 99999999976655555555 45788888777553
No 60
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=95.88 E-value=0.015 Score=64.39 Aligned_cols=23 Identities=9% Similarity=0.132 Sum_probs=19.9
Q ss_pred CCCcEEEeCcCCCChHHHHHHHH
Q 002584 346 SKKPLYLHSKEGVWRTYAMVSRW 368 (904)
Q Consensus 346 ~~~PVLVHCtAGKDRTGaLvaLl 368 (904)
..+|++|||.+|.+|||+++++-
T Consensus 220 ~~~PIVVHCSaGvGRTGtFcaiD 242 (298)
T PHA02740 220 KIAPIIIDCIDGISSSAVFCVFD 242 (298)
T ss_pred CCCCEEEECCCCCchhHHHHHHH
Confidence 35799999999999999887764
No 61
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=95.68 E-value=0.016 Score=63.97 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.6
Q ss_pred CCcEEEeCcCCCChHHHHHHHH
Q 002584 347 KKPLYLHSKEGVWRTYAMVSRW 368 (904)
Q Consensus 347 ~~PVLVHCtAGKDRTGaLvaLl 368 (904)
.+|++|||.+|.+|||+++++-
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid 250 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAID 250 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHH
Confidence 4799999999999999888764
No 62
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=95.32 E-value=0.019 Score=63.75 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.2
Q ss_pred CcEEEeCcCCCChHHHHHHHH
Q 002584 348 KPLYLHSKEGVWRTYAMVSRW 368 (904)
Q Consensus 348 ~PVLVHCtAGKDRTGaLvaLl 368 (904)
+|++|||.+|.+|||+++++-
T Consensus 230 ~PIvVHCsaGvGRtGtfcaid 250 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVD 250 (312)
T ss_pred CCEEEEecCCCcchhHHHHHH
Confidence 799999999999999888774
No 63
>PRK13054 lipid kinase; Reviewed
Probab=95.29 E-value=0.054 Score=59.30 Aligned_cols=107 Identities=21% Similarity=0.183 Sum_probs=62.9
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCCh--h--hhhhcCCCCccceeeeccCcccccCCCcEEEEEcCC
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDV--H--DIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v--~--~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGD 765 (904)
+++++||..++......+.++..+|.+ .++++.+.... . ..+. ......++|.||++|||
T Consensus 3 ~~~~~~i~N~~~~~~~~~~~~~~~l~~-~g~~~~v~~t~~~~~a~~~a---------------~~~~~~~~d~vvv~GGD 66 (300)
T PRK13054 3 FPKSLLILNGKSAGNEELREAVGLLRE-EGHTLHVRVTWEKGDAARYV---------------EEALALGVATVIAGGGD 66 (300)
T ss_pred CceEEEEECCCccchHHHHHHHHHHHH-cCCEEEEEEecCCCcHHHHH---------------HHHHHcCCCEEEEECCc
Confidence 467777777765444556667777754 56664432211 0 1110 01123457999999999
Q ss_pred chHHHHHHhcCCC----CCcEEEEeCCCCcccC-CCC-cccHHHHHHHHHcCC
Q 002584 766 GVILHASNLFRGA----VPPVISFNLGSLGFLT-SHP-FEDYRQDLRQVIYGN 812 (904)
Q Consensus 766 GTlL~Aar~~~~~----~~PVLGIN~GsLGFLt-~~~-~ed~~~~L~~il~G~ 812 (904)
||+=.+++.+... .+|+-=|-.|+-.=++ .+. +.+++++++.+..|.
T Consensus 67 GTl~evv~~l~~~~~~~~~~lgiiP~GTgNdfar~lgi~~~~~~a~~~i~~g~ 119 (300)
T PRK13054 67 GTINEVATALAQLEGDARPALGILPLGTANDFATAAGIPLEPDKALKLAIEGR 119 (300)
T ss_pred cHHHHHHHHHHhhccCCCCcEEEEeCCcHhHHHHhcCCCCCHHHHHHHHHhCC
Confidence 9999888876532 3565445666432222 122 346778888888776
No 64
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=95.28 E-value=0.053 Score=63.87 Aligned_cols=53 Identities=26% Similarity=0.251 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHhcC------------CCCcEEEeCcCCCChHHHHHHHHHHH-cC-CCHHHHHHhhc
Q 002584 331 TMEQVEKFASLVSNS------------SKKPLYLHSKEGVWRTYAMVSRWRQY-MA-RCASQISGQTI 384 (904)
Q Consensus 331 s~e~I~afleil~ds------------~~~PVLVHCtAGKDRTGaLvaLlr~~-lG-V~~edIiaDYL 384 (904)
+.+.+..|++.+... ...| +|||.+|.+|||++++++... .+ ++.++++.+.=
T Consensus 439 ST~~LleLvr~Vr~~~q~~~~~~~~~nk~~P-VVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR 505 (535)
T PRK15375 439 STDQLEYLADRVKNSNQNGAPGRSSSDKHLP-MIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFR 505 (535)
T ss_pred ChHHHHHHHHHHHHhhhcccccccccCCCCc-eEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 445677776655321 0235 799999999999998887532 12 66777766543
No 65
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=95.21 E-value=0.03 Score=62.97 Aligned_cols=60 Identities=28% Similarity=0.405 Sum_probs=50.0
Q ss_pred CCcEEEEEcCCchHHHHHHhcCCCCCcEEEEeCCCCcccC--CCCcccHHHHHHHHHcCCCCC
Q 002584 755 RVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLT--SHPFEDYRQDLRQVIYGNNTL 815 (904)
Q Consensus 755 ~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~GsLGFLt--~~~~ed~~~~L~~il~G~y~i 815 (904)
.+|+|+.+|||||.=-++... +.++|||||.+|.--|.. ..+|+.....+..+++|++++
T Consensus 100 gVdlIvfaGGDGTarDVa~av-~~~vPvLGipaGvk~~SgvfA~~P~~aa~l~~~~lkg~~r~ 161 (355)
T COG3199 100 GVDLIVFAGGDGTARDVAEAV-GADVPVLGIPAGVKNYSGVFALSPEDAARLLGAFLKGNARL 161 (355)
T ss_pred CceEEEEeCCCccHHHHHhhc-cCCCceEeeccccceeccccccChHHHHHHHHHHhcccccc
Confidence 799999999999988887776 778999999999655553 467888888899999996554
No 66
>PRK13059 putative lipid kinase; Reviewed
Probab=95.10 E-value=0.14 Score=56.20 Aligned_cols=108 Identities=15% Similarity=0.217 Sum_probs=64.0
Q ss_pred CEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEE-cCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCc
Q 002584 691 RTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILV-EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (904)
Q Consensus 691 k~VlIv~K~~~---~~~~~a~el~~~L~~~~gi~V~v-e~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDG 766 (904)
++++||..|.. ...+.+.++.++|.+ .++++.+ ......... .......+.+|.||++||||
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~~-------------~~~~~~~~~~d~vi~~GGDG 67 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQE-KGYLVVPYRISLEYDLK-------------NAFKDIDESYKYILIAGGDG 67 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHH-CCcEEEEEEccCcchHH-------------HHHHHhhcCCCEEEEECCcc
Confidence 46778877763 234556778888864 5666443 221111000 00112235679999999999
Q ss_pred hHHHHHHhcC--CCCCcEEEEeCCCCcccC-CCC-cccHHHHHHHHHcCC
Q 002584 767 VILHASNLFR--GAVPPVISFNLGSLGFLT-SHP-FEDYRQDLRQVIYGN 812 (904)
Q Consensus 767 TlL~Aar~~~--~~~~PVLGIN~GsLGFLt-~~~-~ed~~~~L~~il~G~ 812 (904)
|+=.+++-+. +..+|+-=|-+|+-.-++ .+. +.+..++++.+..|.
T Consensus 68 Tv~evv~gl~~~~~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~ 117 (295)
T PRK13059 68 TVDNVVNAMKKLNIDLPIGILPVGTANDFAKFLGMPTDIGEACEQILKSK 117 (295)
T ss_pred HHHHHHHHHHhcCCCCcEEEECCCCHhHHHHHhCCCCCHHHHHHHHHhCC
Confidence 9988888765 334665445667533322 122 356788889888876
No 67
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=94.96 E-value=0.042 Score=61.38 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=19.1
Q ss_pred CcEEEeCcCCCChHHHHHHHH
Q 002584 348 KPLYLHSKEGVWRTYAMVSRW 368 (904)
Q Consensus 348 ~PVLVHCtAGKDRTGaLvaLl 368 (904)
+|++|||.+|.+|||+++++-
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid 268 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAID 268 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHH
Confidence 799999999999999888764
No 68
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=94.89 E-value=0.027 Score=57.69 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHh---cCCCCcEEEeCcCCCChHHHHHHHHHH
Q 002584 332 MEQVEKFASLVS---NSSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (904)
Q Consensus 332 ~e~I~afleil~---ds~~~PVLVHCtAGKDRTGaLvaLlr~ 370 (904)
.+.+..|++.+. +....|++|||.+|.+|||+++++...
T Consensus 152 ~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~ 193 (235)
T PF00102_consen 152 PESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDIL 193 (235)
T ss_dssp SHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHH
T ss_pred cchhhhhhhhccccccCCccceEeecccccccccccccchhh
Confidence 455555555543 235689999999999999988887654
No 69
>PRK13337 putative lipid kinase; Reviewed
Probab=94.85 E-value=0.23 Score=54.56 Aligned_cols=106 Identities=16% Similarity=0.221 Sum_probs=61.1
Q ss_pred CEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEE--cCChhh--hhhcCCCCccceeeeccCcccccCCCcEEEEEc
Q 002584 691 RTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILV--EPDVHD--IFARIPGFGFVQTFYLQDTSDLHERVDFVACLG 763 (904)
Q Consensus 691 k~VlIv~K~~~---~~~~~a~el~~~L~~~~gi~V~v--e~~v~~--~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLG 763 (904)
++++||..|.. .....+.++.+.|.+ .++++.+ -....+ .+.+ .-..+.+|.||++|
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~-~~~~~~~~~t~~~~~a~~~a~---------------~~~~~~~d~vvv~G 65 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQ-AGYETSAHATTGPGDATLAAE---------------RAVERKFDLVIAAG 65 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHH-cCCEEEEEEecCCCCHHHHHH---------------HHHhcCCCEEEEEc
Confidence 57888888763 223456677777754 4655332 111110 0100 01124579999999
Q ss_pred CCchHHHHHHhcCCC--CCcEEEEeCCCCcccCC-CC-cccHHHHHHHHHcCC
Q 002584 764 GDGVILHASNLFRGA--VPPVISFNLGSLGFLTS-HP-FEDYRQDLRQVIYGN 812 (904)
Q Consensus 764 GDGTlL~Aar~~~~~--~~PVLGIN~GsLGFLt~-~~-~ed~~~~L~~il~G~ 812 (904)
||||+=.++..+... .+|+-=|-.|+-.-++- +. +.+++++++.+..|.
T Consensus 66 GDGTl~~vv~gl~~~~~~~~lgiiP~GT~NdfAr~lgi~~~~~~a~~~i~~g~ 118 (304)
T PRK13337 66 GDGTLNEVVNGIAEKENRPKLGIIPVGTTNDFARALHVPRDIEKAADVIIEGH 118 (304)
T ss_pred CCCHHHHHHHHHhhCCCCCcEEEECCcCHhHHHHHcCCCCCHHHHHHHHHcCC
Confidence 999998888765433 44554445665433331 11 346778888888776
No 70
>PHA02738 hypothetical protein; Provisional
Probab=94.77 E-value=0.036 Score=61.86 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.3
Q ss_pred CCcEEEeCcCCCChHHHHHHHH
Q 002584 347 KKPLYLHSKEGVWRTYAMVSRW 368 (904)
Q Consensus 347 ~~PVLVHCtAGKDRTGaLvaLl 368 (904)
.+|++|||.+|.+|||+++++-
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaid 248 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVD 248 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHH
Confidence 4699999999999999877764
No 71
>PLN02160 thiosulfate sulfurtransferase
Probab=94.55 E-value=0.16 Score=49.89 Aligned_cols=87 Identities=16% Similarity=0.290 Sum_probs=51.7
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCC----CCCCHHHHHHHHHHHhcCCCCcE
Q 002584 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR----TAPTMEQVEKFASLVSNSSKKPL 350 (904)
Q Consensus 275 pT~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~----~~Ps~e~I~afleil~ds~~~PV 350 (904)
++++++..+.+.+ ..|||.|+.. + |. .-...|-..+++|.... ...+.+....+.+.+ ..++|+
T Consensus 17 i~~~e~~~~~~~~-~~lIDVR~~~-E---~~-----~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~--~~~~~I 84 (136)
T PLN02160 17 VDVSQAKTLLQSG-HQYLDVRTQD-E---FR-----RGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLL--NPADDI 84 (136)
T ss_pred eCHHHHHHHHhCC-CEEEECCCHH-H---Hh-----cCCCCCcceecccchhcCcccccCCHHHHHHHHhcc--CCCCcE
Confidence 5777887776667 4799999985 1 11 11223434577776321 111233333333332 356799
Q ss_pred EEeCcCCCChHHHHHHHHHHHcCCC
Q 002584 351 YLHSKEGVWRTYAMVSRWRQYMARC 375 (904)
Q Consensus 351 LVHCtAGKDRTGaLvaLlr~~lGV~ 375 (904)
++||.+|. |+..++..+.. .|..
T Consensus 85 ivyC~sG~-RS~~Aa~~L~~-~G~~ 107 (136)
T PLN02160 85 LVGCQSGA-RSLKATTELVA-AGYK 107 (136)
T ss_pred EEECCCcH-HHHHHHHHHHH-cCCC
Confidence 99999998 99977666644 4543
No 72
>PRK13055 putative lipid kinase; Reviewed
Probab=94.40 E-value=0.27 Score=54.98 Aligned_cols=106 Identities=11% Similarity=0.171 Sum_probs=62.1
Q ss_pred CEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEE--EEcC-C--hhhhhhcCCCCccceeeeccCcccccCCCcEEEEE
Q 002584 691 RTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNI--LVEP-D--VHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACL 762 (904)
Q Consensus 691 k~VlIv~K~~~---~~~~~a~el~~~L~~~~gi~V--~ve~-~--v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvL 762 (904)
++++||..|.. ...+.+.++...|.+ .++++ +... . -+..+.. ......+|.||++
T Consensus 3 ~r~~iI~NP~sG~~~~~~~~~~i~~~l~~-~g~~~~i~~t~~~~~~a~~~~~---------------~~~~~~~d~vvv~ 66 (334)
T PRK13055 3 KRARLIYNPTSGQEIMKKNVADILDILEQ-AGYETSAFQTTPEPNSAKNEAK---------------RAAEAGFDLIIAA 66 (334)
T ss_pred ceEEEEECCCCCchhHHHHHHHHHHHHHH-cCCeEEEEEeecCCccHHHHHH---------------HHhhcCCCEEEEE
Confidence 57888888773 234556778888854 46553 3221 1 1111110 0112457999999
Q ss_pred cCCchHHHHHHhcCCC--CCcEEEEeCCCCcccC-CCC-cc-cHHHHHHHHHcCC
Q 002584 763 GGDGVILHASNLFRGA--VPPVISFNLGSLGFLT-SHP-FE-DYRQDLRQVIYGN 812 (904)
Q Consensus 763 GGDGTlL~Aar~~~~~--~~PVLGIN~GsLGFLt-~~~-~e-d~~~~L~~il~G~ 812 (904)
|||||+=.+++-+... .+|+-=|-+|+-.-++ .+. +. +..++++.+..|.
T Consensus 67 GGDGTl~evvngl~~~~~~~~LgiiP~GTgNdfAr~Lgi~~~~~~~a~~~l~~g~ 121 (334)
T PRK13055 67 GGDGTINEVVNGIAPLEKRPKMAIIPAGTTNDYARALKIPRDNPVEAAKVILKNQ 121 (334)
T ss_pred CCCCHHHHHHHHHhhcCCCCcEEEECCCchhHHHHHcCCCCcCHHHHHHHHHcCC
Confidence 9999998888876543 3444435667533222 122 23 5778888888776
No 73
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=94.34 E-value=0.077 Score=51.00 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=27.4
Q ss_pred CcEEEEEcCCchHHHHHHhcCCCCC----cEEEEeCCCCc
Q 002584 756 VDFVACLGGDGVILHASNLFRGAVP----PVISFNLGSLG 791 (904)
Q Consensus 756 ~DlVIvLGGDGTlL~Aar~~~~~~~----PVLGIN~GsLG 791 (904)
.|.||++|||||+=.++..+..... |+.=|-+|+--
T Consensus 55 ~~~ivv~GGDGTl~~vv~~l~~~~~~~~~~l~iiP~GT~N 94 (130)
T PF00781_consen 55 PDVIVVVGGDGTLNEVVNGLMGSDREDKPPLGIIPAGTGN 94 (130)
T ss_dssp -SEEEEEESHHHHHHHHHHHCTSTSSS--EEEEEE-SSS-
T ss_pred ccEEEEEcCccHHHHHHHHHhhcCCCccceEEEecCCChh
Confidence 5999999999999999998876654 77666777543
No 74
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=94.20 E-value=0.21 Score=54.65 Aligned_cols=59 Identities=20% Similarity=0.252 Sum_probs=39.0
Q ss_pred CCCcEEEEEcCCchHHHHHHhcCC----CCCcEEEEeCCCCcccC-CCC-cccHHHHHHHHHcCC
Q 002584 754 ERVDFVACLGGDGVILHASNLFRG----AVPPVISFNLGSLGFLT-SHP-FEDYRQDLRQVIYGN 812 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~~----~~~PVLGIN~GsLGFLt-~~~-~ed~~~~L~~il~G~ 812 (904)
.++|.||++|||||+=.++.-+.. ..+|+-=|-+|+-.=++ .+. +.+.+++++.++.|.
T Consensus 51 ~~~d~vv~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP~GTgNdfAr~l~ip~~~~~a~~~i~~g~ 115 (293)
T TIGR03702 51 LGVSTVIAGGGDGTLREVATALAQIRDDAAPALGLLPLGTANDFATAAGIPLEPAKALKLALNGA 115 (293)
T ss_pred cCCCEEEEEcCChHHHHHHHHHHhhCCCCCCcEEEEcCCchhHHHHhcCCCCCHHHHHHHHHhCC
Confidence 457999999999998888876642 22345445666533222 222 356788888888776
No 75
>PRK12361 hypothetical protein; Provisional
Probab=93.99 E-value=0.19 Score=59.66 Aligned_cols=108 Identities=15% Similarity=0.192 Sum_probs=64.8
Q ss_pred CCEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEEcCCh--hhhhhcCCCCccceeeeccCcccccCCCcEEEEEcC
Q 002584 690 PRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILVEPDV--HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG 764 (904)
Q Consensus 690 pk~VlIv~K~~~---~~~~~a~el~~~L~~~~gi~V~ve~~v--~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGG 764 (904)
.++++||..|.. ...+.+.++.+.|.+...+.++.-... +..+. ..-..+++|.||++||
T Consensus 242 ~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~~~~~v~~t~~~~~a~~la---------------~~~~~~~~d~Viv~GG 306 (547)
T PRK12361 242 HKRAWLIANPVSGGGKWQEYGEQIQRELKAYFDLTVKLTTPEISAEALA---------------KQARKAGADIVIACGG 306 (547)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHhcCCceEEEECCCCccHHHHH---------------HHHHhcCCCEEEEECC
Confidence 456778877763 244567788888864322333321110 01110 0012345799999999
Q ss_pred CchHHHHHHhcCCCCCcEEEEeCCCCcccCC-C---C--cccHHHHHHHHHcCC
Q 002584 765 DGVILHASNLFRGAVPPVISFNLGSLGFLTS-H---P--FEDYRQDLRQVIYGN 812 (904)
Q Consensus 765 DGTlL~Aar~~~~~~~PVLGIN~GsLGFLt~-~---~--~ed~~~~L~~il~G~ 812 (904)
|||+=.++..+.+.++|+-=|-+|+-.-++- + . ..+..++++.+.+|.
T Consensus 307 DGTl~ev~~~l~~~~~~lgiiP~GTgNdfAr~L~gi~~~~~~~~~a~~~i~~g~ 360 (547)
T PRK12361 307 DGTVTEVASELVNTDITLGIIPLGTANALSHALFGLGSKLIPVEQACDNIIQGH 360 (547)
T ss_pred CcHHHHHHHHHhcCCCCEEEecCCchhHHHHHhcCCCCCCccHHHHHHHHHhCC
Confidence 9999999988877777765556665442221 1 1 146778888888876
No 76
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=93.31 E-value=0.29 Score=44.50 Aligned_cols=86 Identities=14% Similarity=0.044 Sum_probs=46.6
Q ss_pred CCHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002584 275 VTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (904)
Q Consensus 275 pT~eDLa~L~elGI-KTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~~PVLVH 353 (904)
++++++..+.+.|= -.|||.|+.. + +. .-...| -+++|+........+........+ ..++|++||
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~-e---~~-----~ghi~g--a~~ip~~~~~~~~~~~~~~~~~~~--~~~~~ivv~ 67 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNES-D---YE-----RWKIDG--ENNTPYFDPYFDFLEIEEDILDQL--PDDQEVTVI 67 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHH-H---Hh-----hcccCC--CcccccccchHHHHHhhHHHHhhC--CCCCeEEEE
Confidence 35667776655542 4799999975 1 11 011122 255666522110000112223333 356799999
Q ss_pred CcCCCChHHHHHHHHHHHcCCC
Q 002584 354 SKEGVWRTYAMVSRWRQYMARC 375 (904)
Q Consensus 354 CtAGKDRTGaLvaLlr~~lGV~ 375 (904)
|.+|. |+..++..+.. +|.+
T Consensus 68 C~~G~-rs~~aa~~L~~-~G~~ 87 (100)
T cd01523 68 CAKEG-SSQFVAELLAE-RGYD 87 (100)
T ss_pred cCCCC-cHHHHHHHHHH-cCce
Confidence 99998 88766666543 5753
No 77
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=93.26 E-value=0.49 Score=55.89 Aligned_cols=113 Identities=17% Similarity=0.189 Sum_probs=64.7
Q ss_pred cccccCCCEEEEEecCCh---hHHHHHH-HHHHHHhcCCCeEEEEcCCh--hh--hhhcCCCCccceeeeccCcccccCC
Q 002584 684 LMWKTTPRTVLVLKKPGP---ALMEEAK-EVASFLYHQEKMNILVEPDV--HD--IFARIPGFGFVQTFYLQDTSDLHER 755 (904)
Q Consensus 684 l~w~~~pk~VlIv~K~~~---~~~~~a~-el~~~L~~~~gi~V~ve~~v--~~--~l~~~~~~~~~~~~~~~~~~d~~~~ 755 (904)
+.+-..||+++||..|.. ....... ++...|.+ .++++.+.... .+ .+. . +....+
T Consensus 105 ~~~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~-~gi~~~v~~T~~~ghA~~la-------------~--~~~~~~ 168 (481)
T PLN02958 105 LDSLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLED-ADIQLTIQETKYQLHAKEVV-------------R--TMDLSK 168 (481)
T ss_pred HhhccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHH-cCCeEEEEeccCccHHHHHH-------------H--HhhhcC
Confidence 334346899999988863 2334443 46667754 56664432211 11 110 0 001245
Q ss_pred CcEEEEEcCCchHHHHHHhcCCC-------CCcEEEEeCCCC-cccCCC----C-cccHHHHHHHHHcCC
Q 002584 756 VDFVACLGGDGVILHASNLFRGA-------VPPVISFNLGSL-GFLTSH----P-FEDYRQDLRQVIYGN 812 (904)
Q Consensus 756 ~DlVIvLGGDGTlL~Aar~~~~~-------~~PVLGIN~GsL-GFLt~~----~-~ed~~~~L~~il~G~ 812 (904)
+|.||++||||||=.+++-+... .+|+-=|-+|+- +|-..+ . +.+..+++..|+.|.
T Consensus 169 ~D~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~~~~~A~~~I~~g~ 238 (481)
T PLN02958 169 YDGIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPCSATNAVLAIIRGH 238 (481)
T ss_pred CCEEEEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCCCcCHHHHHHHHHcCC
Confidence 79999999999988888765432 456554566642 222222 1 346677888888886
No 78
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=92.93 E-value=0.11 Score=59.60 Aligned_cols=102 Identities=19% Similarity=0.233 Sum_probs=68.5
Q ss_pred CCHhh-HHHHHHcC--CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCC-CCCHHHHHHHHHHHhc------
Q 002584 275 VTEEG-LKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRT-APTMEQVEKFASLVSN------ 344 (904)
Q Consensus 275 pT~eD-La~L~elG--IKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~-~Ps~e~I~afleil~d------ 344 (904)
-++.+ +..|++++ +--+|||..-. ..| ..+..+..|+.|+.+-..... .|+.+.+..|..+++.
T Consensus 48 f~~~dl~~~l~~~~~~vgl~iDltnt~---ryy---~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~ 121 (393)
T KOG2386|consen 48 FQPKDLFELLKEHNYKVGLKIDLTNTL---RYY---DKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTK 121 (393)
T ss_pred cCHHHHHHHHHhcCceEEEEEecccee---eee---ccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhccc
Confidence 34444 56777775 56799997754 223 123467789999998876544 6777777777776542
Q ss_pred CCCCcEEEeCcCCCChHH-HHHHHHHHHcCCCHHHHHHh
Q 002584 345 SSKKPLYLHSKEGVWRTY-AMVSRWRQYMARCASQISGQ 382 (904)
Q Consensus 345 s~~~PVLVHCtAGKDRTG-aLvaLlr~~lGV~~edIiaD 382 (904)
..++=|++||+.|+.||| ++++++..-.+++..+|+.-
T Consensus 122 ~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~ 160 (393)
T KOG2386|consen 122 LDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKR 160 (393)
T ss_pred CCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHH
Confidence 123458999999999999 44454444456777777553
No 79
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=92.89 E-value=0.82 Score=55.55 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcC---CCCcEEEeCcCCCChHHHHHH--HH--HHHcCCCHHHH
Q 002584 334 QVEKFASLVSNS---SKKPLYLHSKEGVWRTYAMVS--RW--RQYMARCASQI 379 (904)
Q Consensus 334 ~I~afleil~ds---~~~PVLVHCtAGKDRTGaLva--Ll--r~~lGV~~edI 379 (904)
.+..|++-+... ..-||+|||..|.+|||+.++ ++ +...|+-.=||
T Consensus 911 slLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDI 963 (1004)
T KOG0793|consen 911 SLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDI 963 (1004)
T ss_pred HHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhH
Confidence 344555555321 235999999999999994332 22 33345544444
No 80
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=92.68 E-value=0.15 Score=63.85 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhc---CCCCcEEEeCcCCCChHHHHHH
Q 002584 332 MEQVEKFASLVSN---SSKKPLYLHSKEGVWRTYAMVS 366 (904)
Q Consensus 332 ~e~I~afleil~d---s~~~PVLVHCtAGKDRTGaLva 366 (904)
+.++..|++.+.. ..+-||++||.||.||||+++.
T Consensus 1045 ~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl 1082 (1144)
T KOG0792|consen 1045 PNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLIL 1082 (1144)
T ss_pred hHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHH
Confidence 4455556555532 2356999999999999996544
No 81
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=92.56 E-value=0.5 Score=43.11 Aligned_cols=85 Identities=11% Similarity=0.053 Sum_probs=47.3
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002584 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (904)
Q Consensus 274 qpT~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~~PVLVH 353 (904)
.++++++..+.+.+=-.|||.|+.. + +. .-...| -+++|+..... ..+.+.++ .....++|++||
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~-e---~~-----~ghi~g--A~~ip~~~~~~-~~~~~~~~---~~~~~~~~ivvy 67 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDY-E---YD-----IGHFKG--AVNPDVDTFRE-FPFWLDEN---LDLLKGKKVLMY 67 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChh-h---hh-----cCEecc--ccCCCcccHhH-hHHHHHhh---hhhcCCCEEEEE
Confidence 4677788776555445899999875 1 11 011122 35666652110 01112221 111457899999
Q ss_pred CcCCCChHHHHHHHHHHHcCCC
Q 002584 354 SKEGVWRTYAMVSRWRQYMARC 375 (904)
Q Consensus 354 CtAGKDRTGaLvaLlr~~lGV~ 375 (904)
|.+|. |+...+..+. .+|..
T Consensus 68 C~~G~-rs~~a~~~L~-~~G~~ 87 (101)
T cd01518 68 CTGGI-RCEKASAYLK-ERGFK 87 (101)
T ss_pred CCCch-hHHHHHHHHH-HhCCc
Confidence 99998 9986655543 35654
No 82
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=92.53 E-value=0.51 Score=43.73 Aligned_cols=81 Identities=12% Similarity=0.127 Sum_probs=46.8
Q ss_pred CCCHhhHHHHHHcC-CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 002584 274 QVTEEGLKWLMEKG-YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 352 (904)
Q Consensus 274 qpT~eDLa~L~elG-IKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~~PVLV 352 (904)
.++++++..+.+.| --.|||.|+.. + |. ....+| -+++|+. .+...+..+....+.|++|
T Consensus 11 ~i~~~~l~~~~~~~~~~~liDvR~~~-e---~~-----~ghIpg--ainip~~--------~l~~~~~~l~~~~~~~ivv 71 (109)
T cd01533 11 SVSADELAALQARGAPLVVLDGRRFD-E---YR-----KMTIPG--SVSCPGA--------ELVLRVGELAPDPRTPIVV 71 (109)
T ss_pred cCCHHHHHHHHhcCCCcEEEeCCCHH-H---Hh-----cCcCCC--ceeCCHH--------HHHHHHHhcCCCCCCeEEE
Confidence 56888887766655 24699999875 1 11 011112 2444442 3333333332234679999
Q ss_pred eCcCCCChHHHHHHHHHHHcCCC
Q 002584 353 HSKEGVWRTYAMVSRWRQYMARC 375 (904)
Q Consensus 353 HCtAGKDRTGaLvaLlr~~lGV~ 375 (904)
||.+|. |+..++..++ .+|.+
T Consensus 72 ~C~~G~-rs~~a~~~L~-~~G~~ 92 (109)
T cd01533 72 NCAGRT-RSIIGAQSLI-NAGLP 92 (109)
T ss_pred ECCCCc-hHHHHHHHHH-HCCCC
Confidence 999998 8865554443 36763
No 83
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=92.50 E-value=0.32 Score=49.62 Aligned_cols=80 Identities=21% Similarity=0.229 Sum_probs=48.8
Q ss_pred HHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEE----EEEecCCCCCCCHHHHHHHHHHHhc-CCCCcEEEeCcCCC
Q 002584 284 MEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVEL----IKIPVEVRTAPTMEQVEKFASLVSN-SSKKPLYLHSKEGV 358 (904)
Q Consensus 284 ~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~y----IhIPV~d~~~Ps~e~I~afleil~d-s~~~PVLVHCtAGK 358 (904)
...|-+.++.|+...... ..++.. ..+ .-++. +..|=..+..|.++++...++++.. ....|+||||-+|.
T Consensus 29 ~rh~~t~mlsl~a~~t~~-~~pa~~--~~e-rhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC~aGI 104 (172)
T COG5350 29 ARHGPTHMLSLLAKGTYF-HRPAVI--AAE-RHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYAGI 104 (172)
T ss_pred hhcCCceEEEeecccccc-cCcccc--chh-hceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccccceeeeecccc
Confidence 345899999999864111 111000 011 11111 1122222456788999999998853 34579999999999
Q ss_pred ChHHHHHHH
Q 002584 359 WRTYAMVSR 367 (904)
Q Consensus 359 DRTGaLvaL 367 (904)
.|+.++++.
T Consensus 105 SRStA~A~i 113 (172)
T COG5350 105 SRSTAAALI 113 (172)
T ss_pred ccchHHHHH
Confidence 999966655
No 84
>PLN02204 diacylglycerol kinase
Probab=92.09 E-value=0.74 Score=55.69 Aligned_cols=72 Identities=24% Similarity=0.366 Sum_probs=43.0
Q ss_pred cCCCEEEEEecCCh---hHHHHHHHHHHHHhcCCCeE--EEEcCChh---hhhhcCCCCccceeeeccCcccccCCCcEE
Q 002584 688 TTPRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMN--ILVEPDVH---DIFARIPGFGFVQTFYLQDTSDLHERVDFV 759 (904)
Q Consensus 688 ~~pk~VlIv~K~~~---~~~~~a~el~~~L~~~~gi~--V~ve~~v~---~~l~~~~~~~~~~~~~~~~~~d~~~~~DlV 759 (904)
..||+++||..|.. .......+++..|.+ .+++ |++-.... +..... .....+.+|.|
T Consensus 157 ~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~-a~i~~~v~~T~~aghA~d~~~~~-------------~~~~l~~~D~V 222 (601)
T PLN02204 157 GRPKNLLVFVHPLSGKGSGSRTWETVSPIFIR-AKVKTKVIVTERAGHAFDVMASI-------------SNKELKSYDGV 222 (601)
T ss_pred CCCceEEEEECCCCCCcchHHHHHHHHHHHHH-cCCeEEEEEecCcchHHHHHHHH-------------hhhhccCCCEE
Confidence 46899999988862 344556678777754 4555 44333221 111100 00113458999
Q ss_pred EEEcCCchHHHHHH
Q 002584 760 ACLGGDGVILHASN 773 (904)
Q Consensus 760 IvLGGDGTlL~Aar 773 (904)
|++||||||=.+++
T Consensus 223 VaVGGDGt~nEVlN 236 (601)
T PLN02204 223 IAVGGDGFFNEILN 236 (601)
T ss_pred EEEcCccHHHHHHH
Confidence 99999999766665
No 85
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=91.98 E-value=0.23 Score=56.35 Aligned_cols=46 Identities=28% Similarity=0.371 Sum_probs=30.7
Q ss_pred CCCCCCC-HHHHHHHHHHHh---cCCCCcEEEeCcCCCChHHHHHHHHHH
Q 002584 325 EVRTAPT-MEQVEKFASLVS---NSSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (904)
Q Consensus 325 ~d~~~Ps-~e~I~afleil~---ds~~~PVLVHCtAGKDRTGaLvaLlr~ 370 (904)
.+...|+ ...+.+|...+. +....|++|||.+|.+|||++.|+=++
T Consensus 261 Pd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~L 310 (374)
T KOG0791|consen 261 PDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRL 310 (374)
T ss_pred cccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHH
Confidence 3444442 334445554443 345789999999999999988887544
No 86
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=91.87 E-value=0.91 Score=42.67 Aligned_cols=96 Identities=10% Similarity=-0.005 Sum_probs=49.6
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCC---------CCCCHHHHHHHHHHHhcC
Q 002584 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR---------TAPTMEQVEKFASLVSNS 345 (904)
Q Consensus 275 pT~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~---------~~Ps~e~I~afleil~ds 345 (904)
++++++..+.+.+--.|||.|+..+..... .+-..-...| -+++|.... ..++.+.+.+++....-.
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~--~~~~~ghI~g--a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGR--KEYLEGHIPG--AVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGIS 77 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchh--hHHhhCCCCC--CEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 356666655444335799999973110000 0000112233 255665322 124456666666544334
Q ss_pred CCCcEEEeCcCCCChHHHHHHHHHHHcCCC
Q 002584 346 SKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (904)
Q Consensus 346 ~~~PVLVHCtAGKDRTGaLvaLlr~~lGV~ 375 (904)
.+.||+|+|..|-.|+..++.++ ..+|.+
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTL-RYFGHE 106 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHH-HHcCCC
Confidence 67899999999732554444333 446754
No 87
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=91.86 E-value=0.23 Score=55.99 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=19.6
Q ss_pred CCCcEEEeCcCCCChHHHHHHHH
Q 002584 346 SKKPLYLHSKEGVWRTYAMVSRW 368 (904)
Q Consensus 346 ~~~PVLVHCtAGKDRTGaLvaLl 368 (904)
..+|++|||.+|.+|||+++++-
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~ 320 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIE 320 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHH
Confidence 35799999999999999877653
No 88
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=91.35 E-value=1.2 Score=49.44 Aligned_cols=105 Identities=21% Similarity=0.306 Sum_probs=64.7
Q ss_pred CEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEEc---CC--hhhhhhcCCCCccceeeeccCcccccCCCcEEEEE
Q 002584 691 RTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILVE---PD--VHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACL 762 (904)
Q Consensus 691 k~VlIv~K~~~---~~~~~a~el~~~L~~~~gi~V~ve---~~--v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvL 762 (904)
+++.+|..+.. .......++.+.|.+ .+.++.+- .. ..+... .-....+|.||+.
T Consensus 3 ~~~~~i~Np~sG~~~~~~~~~~~~~~l~~-~g~~~~~~~t~~~g~a~~~a~----------------~a~~~~~D~via~ 65 (301)
T COG1597 3 KKALLIYNPTSGKGKAKKLLREVEELLEE-AGHELSVRVTEEAGDAIEIAR----------------EAAVEGYDTVIAA 65 (301)
T ss_pred ceEEEEEcccccccchhhHHHHHHHHHHh-cCCeEEEEEeecCccHHHHHH----------------HHHhcCCCEEEEe
Confidence 56676766653 244567788888865 35443321 11 111110 0112378999999
Q ss_pred cCCchHHHHHHhcCCCCCcEEEE-eCCCCcccC---CCCcccHHHHHHHHHcCC
Q 002584 763 GGDGVILHASNLFRGAVPPVISF-NLGSLGFLT---SHPFEDYRQDLRQVIYGN 812 (904)
Q Consensus 763 GGDGTlL~Aar~~~~~~~PVLGI-N~GsLGFLt---~~~~ed~~~~L~~il~G~ 812 (904)
|||||+=.++.-+...+.|.||| -+|+.-=++ .++.+++.++++.+.+|.
T Consensus 66 GGDGTv~evingl~~~~~~~LgilP~GT~NdfAr~Lgip~~~~~~Al~~i~~g~ 119 (301)
T COG1597 66 GGDGTVNEVANGLAGTDDPPLGILPGGTANDFARALGIPLDDIEAALELIKSGE 119 (301)
T ss_pred cCcchHHHHHHHHhcCCCCceEEecCCchHHHHHHcCCCchhHHHHHHHHHcCC
Confidence 99999999999877776663554 346433332 245556889999998886
No 89
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=91.28 E-value=0.24 Score=47.77 Aligned_cols=35 Identities=34% Similarity=0.535 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCchHHHHHHhcCCCC-----CcEEEEeCCC
Q 002584 755 RVDFVACLGGDGVILHASNLFRGAV-----PPVISFNLGS 789 (904)
Q Consensus 755 ~~DlVIvLGGDGTlL~Aar~~~~~~-----~PVLGIN~Gs 789 (904)
.+|.||++|||||+=.++..+.... +|+.=|-+|+
T Consensus 49 ~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT 88 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT 88 (124)
T ss_pred cCCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC
Confidence 4789999999999999988775443 6776666774
No 90
>PRK05320 rhodanese superfamily protein; Provisional
Probab=90.27 E-value=1 Score=49.17 Aligned_cols=174 Identities=13% Similarity=0.102 Sum_probs=86.5
Q ss_pred cCCCchhhhhhhhhhhhHHHHHHHhccCCCCc-chhhH-HHHHHHHHhhhccCCCCCCCCCCC---CcCCCCceee--ee
Q 002584 181 QLPPLAIFRSEMKRCCESMHIALENYLTPEDV-RSLDV-WRKLQRLKNVCYDSGFPRGDDYPI---HTLFANWSPV--YL 253 (904)
Q Consensus 181 ~~p~l~l~r~~l~~~~~~l~~~l~~yl~p~~~-~~l~v-~rkLqr~~n~~~d~g~pR~~gyp~---~t~i~Nfr~V--~~ 253 (904)
.+++..-+|..+..+|..+.+..-=|+++++= .++.. ..++..+...... .|+.++... ...-+-|... ..
T Consensus 13 ~i~~~~~~~~~~~~~~~~~~~~G~i~ia~eGiN~t~~g~~~~id~~~~~l~~--~~~~~dl~~k~~~~~~~pF~~l~vk~ 90 (257)
T PRK05320 13 SLDDPETLRPLVLARCEALGLKGTILLAPEGINLFLAGTREAIDAFYAWLRA--DARFADLQVKESLSDSQPFRRMLVKL 90 (257)
T ss_pred ecCCHHHHHHHHHHHHHHCCCeEEEEEcCCCceEEEEeeHHHHHHHHHHHhh--CCCccCceeecccccCCCchhccchh
Confidence 34566788899999999988888888888871 11111 2233333332211 233333222 1112234331 10
Q ss_pred cC-CccccccCCCcccEEEcCCCCHhhHHHHHHcCC------cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCC
Q 002584 254 SN-SKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGY------KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEV 326 (904)
Q Consensus 254 ~~-~~~~~~~~~~e~~LYRSGqpT~eDLa~L~elGI------KTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d 326 (904)
.+ +.. .+.....+..-+...++++++..+.+.+- -.|||.|+.. +-. .-...| .+++|+..
T Consensus 91 k~eiv~-~g~~~~n~~~~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~-E~~--------~Ghi~G--AiniPl~~ 158 (257)
T PRK05320 91 KREIIT-MKRPAIRPELGRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAF-EVD--------VGTFDG--ALDYRIDK 158 (257)
T ss_pred hhHHhh-cCCcccCcccCcCceeCHHHHHHHHhccccccCCCeEEEECCCHH-HHc--------cCccCC--CEeCChhH
Confidence 00 000 00000011111334678888877665542 3699999985 110 001122 36667642
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCcEEEeCcCCCChHHHHHHHHHHHcCC
Q 002584 327 RTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (904)
Q Consensus 327 ~~~Ps~e~I~afleil~ds~~~PVLVHCtAGKDRTGaLvaLlr~~lGV 374 (904)
... .+..+.. ......++||+++|+.|. |+-.++..++. .|.
T Consensus 159 f~~-~~~~l~~---~~~~~kdk~IvvyC~~G~-Rs~~Aa~~L~~-~Gf 200 (257)
T PRK05320 159 FTE-FPEALAA---HRADLAGKTVVSFCTGGI-RCEKAAIHMQE-VGI 200 (257)
T ss_pred hhh-hHHHHHh---hhhhcCCCeEEEECCCCH-HHHHHHHHHHH-cCC
Confidence 110 1111111 111124789999999998 99877776654 454
No 91
>PRK01415 hypothetical protein; Validated
Probab=89.28 E-value=3.2 Score=45.31 Aligned_cols=171 Identities=12% Similarity=0.050 Sum_probs=87.3
Q ss_pred cCCCchhhhhhhhhhhhHHHHHHHhccCCCC-cchhhHH-HHHHHHHhhhc-cCCCC---CCCCCCCCcCCCCceeeeec
Q 002584 181 QLPPLAIFRSEMKRCCESMHIALENYLTPED-VRSLDVW-RKLQRLKNVCY-DSGFP---RGDDYPIHTLFANWSPVYLS 254 (904)
Q Consensus 181 ~~p~l~l~r~~l~~~~~~l~~~l~~yl~p~~-~~~l~v~-rkLqr~~n~~~-d~g~p---R~~gyp~~t~i~Nfr~V~~~ 254 (904)
.+++..-+|..+..+|+.+.+..-=|+++++ -.++..- ..+.++.+... |-++. --..+++...|...+. ...
T Consensus 15 ~i~~~~~~~~~l~~~~~~~~~~G~i~la~EGIN~tisg~~~~~~~~~~~l~~~~~~~~~~~k~s~~~~~~F~~l~v-r~k 93 (247)
T PRK01415 15 NIEEPANLIPKLLLIGKRKYVRGTILLANEGFNGSFSGSYENVNLVLEELIKLTGPKDVNVKINYSDVHPFQKLKV-RLK 93 (247)
T ss_pred cCCCHHHHHHHHHHHHHHcCCeeEEEEccCccceEeeCCHHHHHHHHHHHHhCcCCCCceeecccccCCCCCccEE-Eee
Confidence 3556678889999999998888888888887 1111111 12222222111 11221 1222333444444443 111
Q ss_pred C-CccccccCCCcccEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHH
Q 002584 255 N-SKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTME 333 (904)
Q Consensus 255 ~-~~~~~~~~~~e~~LYRSGqpT~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e 333 (904)
+ +........ .+..-++..++++++..+.+..=-.|||.|.+. |- . . -...| -+++|+.
T Consensus 94 ~eiV~~g~~~~-~~~~~~g~~i~p~e~~~ll~~~~~vvIDVRn~~-E~---~--~---Ghi~g--Ainip~~-------- 153 (247)
T PRK01415 94 KEIVAMNVDDL-NVDLFKGEYIEPKDWDEFITKQDVIVIDTRNDY-EV---E--V---GTFKS--AINPNTK-------- 153 (247)
T ss_pred ceEEecCCCCC-CccccCccccCHHHHHHHHhCCCcEEEECCCHH-HH---h--c---CCcCC--CCCCChH--------
Confidence 1 000000000 112225557999999888776545799999975 11 0 0 00111 1334443
Q ss_pred HHHHHHHH----HhcCCCCcEEEeCcCCCChHHHHHHHHHHHcCC
Q 002584 334 QVEKFASL----VSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (904)
Q Consensus 334 ~I~aflei----l~ds~~~PVLVHCtAGKDRTGaLvaLlr~~lGV 374 (904)
.+.+|-+. .....++||+++|++|. |+-.++..++. .|.
T Consensus 154 ~f~e~~~~~~~~~~~~k~k~Iv~yCtgGi-Rs~kAa~~L~~-~Gf 196 (247)
T PRK01415 154 TFKQFPAWVQQNQELLKGKKIAMVCTGGI-RCEKSTSLLKS-IGY 196 (247)
T ss_pred HHhhhHHHHhhhhhhcCCCeEEEECCCCh-HHHHHHHHHHH-cCC
Confidence 22222111 11235789999999998 98877776654 453
No 92
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=88.94 E-value=2 Score=39.12 Aligned_cols=81 Identities=11% Similarity=0.204 Sum_probs=45.7
Q ss_pred CCCHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc-CCCCcE
Q 002584 274 QVTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN-SSKKPL 350 (904)
Q Consensus 274 qpT~eDLa~L~elG--IKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~d-s~~~PV 350 (904)
|++++++..+.+.+ --.|||.|+.+ + +. .....|. +++|.. .+..+.+.+.. ..+.|+
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~-e---~~-----~~hI~ga--~~ip~~--------~~~~~~~~~~~~~~~~~v 61 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPE-E---LE-----IAFLPGF--LHLPMS--------EIPERSKELDSDNPDKDI 61 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHH-H---Hh-----cCcCCCC--EecCHH--------HHHHHHHHhcccCCCCeE
Confidence 46777777665554 34799999875 1 11 0112222 344432 33334444422 247799
Q ss_pred EEeCcCCCChHHHHHHHHHHHcCCC
Q 002584 351 YLHSKEGVWRTYAMVSRWRQYMARC 375 (904)
Q Consensus 351 LVHCtAGKDRTGaLvaLlr~~lGV~ 375 (904)
+++|..|. |+-..+..+.. .|.+
T Consensus 62 v~~c~~g~-rs~~~~~~l~~-~G~~ 84 (101)
T cd01528 62 VVLCHHGG-RSMQVAQWLLR-QGFE 84 (101)
T ss_pred EEEeCCCc-hHHHHHHHHHH-cCCc
Confidence 99999996 87655555544 5654
No 93
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=88.91 E-value=1.5 Score=39.91 Aligned_cols=87 Identities=24% Similarity=0.216 Sum_probs=45.9
Q ss_pred CHhhHHHHHH-cCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCC---CCCHHHHHHHHHHHhcCCCCcEE
Q 002584 276 TEEGLKWLME-KGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRT---APTMEQVEKFASLVSNSSKKPLY 351 (904)
Q Consensus 276 T~eDLa~L~e-lGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~---~Ps~e~I~afleil~ds~~~PVL 351 (904)
+.+++..+.+ .+=-+|||.|+.. + +. .-..+| -+++|+.... .+.++.+.+++.......+.||+
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~-e---~~-----~ghIpg--A~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 70 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPE-E---LK-----TGKIPG--AINIPLSSLPDALALSEEEFEKKYGFPKPSKDKELI 70 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHH-H---Hh-----cCcCCC--cEEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEE
Confidence 3455555544 4335799999874 1 11 011122 2566664321 12334444444332223577999
Q ss_pred EeCcCCCChHHHHHHHHHHHcCCC
Q 002584 352 LHSKEGVWRTYAMVSRWRQYMARC 375 (904)
Q Consensus 352 VHCtAGKDRTGaLvaLlr~~lGV~ 375 (904)
++|..|. |+..++.++ ..+|..
T Consensus 71 v~c~~g~-~s~~~~~~l-~~~G~~ 92 (106)
T cd01519 71 FYCKAGV-RSKAAAELA-RSLGYE 92 (106)
T ss_pred EECCCcH-HHHHHHHHH-HHcCCc
Confidence 9999997 776544444 445653
No 94
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=88.01 E-value=1.7 Score=39.49 Aligned_cols=77 Identities=21% Similarity=0.306 Sum_probs=47.2
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcE-EEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCc
Q 002584 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVE-LIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSK 355 (904)
Q Consensus 277 ~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~-yIhIPV~d~~~Ps~e~I~afleil~ds~~~PVLVHCt 355 (904)
......+...+--.|||.|... + |. ..+-.. .+|+|+...... ........++|++|+|.
T Consensus 9 ~~~~~~~~~~~~~~liDvR~~~-e---~~-------~~~i~~~~~~ip~~~~~~~--------~~~~~~~~~~~ivv~C~ 69 (110)
T COG0607 9 EDEAALLLAGEDAVLLDVREPE-E---YE-------RGHIPGAAINIPLSELKAA--------ENLLELPDDDPIVVYCA 69 (110)
T ss_pred HHHHHHhhccCCCEEEeccChh-H---hh-------hcCCCcceeeeecccchhh--------hcccccCCCCeEEEEeC
Confidence 3344555566788999999984 1 11 111122 788888743211 11100245789999999
Q ss_pred CCCChHHHHHHHHHHHcCC
Q 002584 356 EGVWRTYAMVSRWRQYMAR 374 (904)
Q Consensus 356 AGKDRTGaLvaLlr~~lGV 374 (904)
+|. |++..+..++. +|.
T Consensus 70 ~G~-rS~~aa~~L~~-~G~ 86 (110)
T COG0607 70 SGV-RSAAAAAALKL-AGF 86 (110)
T ss_pred CCC-ChHHHHHHHHH-cCC
Confidence 999 99877777755 453
No 95
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=87.63 E-value=0.55 Score=54.61 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhc-----CCCCcEEEeCcCCCChHHH
Q 002584 332 MEQVEKFASLVSN-----SSKKPLYLHSKEGVWRTYA 363 (904)
Q Consensus 332 ~e~I~afleil~d-----s~~~PVLVHCtAGKDRTGa 363 (904)
+-.+..|++-+.. ...+||.|||.||.+|||+
T Consensus 431 Pg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGT 467 (600)
T KOG0790|consen 431 PGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGT 467 (600)
T ss_pred ccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcce
Confidence 4456667765532 1357999999999999993
No 96
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=86.03 E-value=4.8 Score=36.31 Aligned_cols=80 Identities=18% Similarity=0.307 Sum_probs=46.8
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCC----CCCCCHHHHHHHHHHHhc--CCCCc
Q 002584 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEV----RTAPTMEQVEKFASLVSN--SSKKP 349 (904)
Q Consensus 276 T~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d----~~~Ps~e~I~afleil~d--s~~~P 349 (904)
|++++..+.+.+=-.|||.|+.. + |. .-...|- +|+|... ......+.+..+...... ..+.+
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~-~---~~-----~~hI~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPE-E---YE-----RGHIPGA--VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKD 69 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHH-H---HH-----HSBETTE--EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSE
T ss_pred CHHHHHhhhhCCCeEEEEeCCHH-H---HH-----cCCCCCC--cccccccccccccccccccccccccccccccccccc
Confidence 46677666655778999999875 1 21 1122333 7888732 223334444444333322 45668
Q ss_pred EEEeCcCCCChHHHHHHH
Q 002584 350 LYLHSKEGVWRTYAMVSR 367 (904)
Q Consensus 350 VLVHCtAGKDRTGaLvaL 367 (904)
|+|+|..|. |++.++++
T Consensus 70 iv~yc~~~~-~~~~~~~~ 86 (113)
T PF00581_consen 70 IVFYCSSGW-RSGSAAAA 86 (113)
T ss_dssp EEEEESSSC-HHHHHHHH
T ss_pred ceeeeeccc-ccchhHHH
Confidence 999998888 88855554
No 97
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=85.83 E-value=3.8 Score=37.00 Aligned_cols=79 Identities=19% Similarity=0.141 Sum_probs=42.2
Q ss_pred CHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002584 276 TEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (904)
Q Consensus 276 T~eDLa~L~elG--IKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~~PVLVH 353 (904)
+++++..+.+.+ --.+||.|+.. + |. .....| -+++|.. .+..-...+....+.|++++
T Consensus 2 s~~~l~~~~~~~~~~~~liDvR~~~-e---~~-----~ghipg--a~~ip~~--------~l~~~~~~~~~~~~~~iv~~ 62 (95)
T cd01534 2 GAAELARWAAEGDRTVYRFDVRTPE-E---YE-----AGHLPG--FRHTPGG--------QLVQETDHFAPVRGARIVLA 62 (95)
T ss_pred CHHHHHHHHHcCCCCeEEEECCCHH-H---HH-----hCCCCC--cEeCCHH--------HHHHHHHHhcccCCCeEEEE
Confidence 566776665554 34689999864 1 11 011222 2455543 12111111212236799999
Q ss_pred CcCCCChHHHHHHHHHHHcCCC
Q 002584 354 SKEGVWRTYAMVSRWRQYMARC 375 (904)
Q Consensus 354 CtAGKDRTGaLvaLlr~~lGV~ 375 (904)
|.+|. |+...+..+ ..+|.+
T Consensus 63 c~~G~-rs~~aa~~L-~~~G~~ 82 (95)
T cd01534 63 DDDGV-RADMTASWL-AQMGWE 82 (95)
T ss_pred CCCCC-hHHHHHHHH-HHcCCE
Confidence 99998 776554444 446653
No 98
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=85.34 E-value=5.4 Score=37.83 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=46.2
Q ss_pred CCHhhHHHHHHc-CCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCC--CCHHHHHHHHHHHhcCCCCcEE
Q 002584 275 VTEEGLKWLMEK-GYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTA--PTMEQVEKFASLVSNSSKKPLY 351 (904)
Q Consensus 275 pT~eDLa~L~el-GIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~--Ps~e~I~afleil~ds~~~PVL 351 (904)
++++++..+.+. .=-.|||.|+.. + +. . .-..+| -+++|...... +.......+...+ ..++|++
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~-e---~~---~-~ghIpg--A~~ip~~~~~~~~~~~~~~~~l~~~~--~~~~~iv 68 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEA-E---WK---F-VGGVPD--AVHVAWQVYPDMEINPNFLAELEEKV--GKDRPVL 68 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHH-H---Hh---c-ccCCCC--ceecchhhccccccCHHHHHHHHhhC--CCCCeEE
Confidence 356666666554 235699999875 1 10 0 011122 35666542211 1222222233323 3568999
Q ss_pred EeCcCCCChHHHHHHHHHHHcCCC
Q 002584 352 LHSKEGVWRTYAMVSRWRQYMARC 375 (904)
Q Consensus 352 VHCtAGKDRTGaLvaLlr~~lGV~ 375 (904)
++|..|. |+...+..++. +|.+
T Consensus 69 v~C~~G~-rs~~aa~~L~~-~G~~ 90 (117)
T cd01522 69 LLCRSGN-RSIAAAEAAAQ-AGFT 90 (117)
T ss_pred EEcCCCc-cHHHHHHHHHH-CCCC
Confidence 9999997 88866655543 5643
No 99
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=84.84 E-value=3.7 Score=36.56 Aligned_cols=80 Identities=13% Similarity=0.219 Sum_probs=42.9
Q ss_pred CCHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002584 275 VTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (904)
Q Consensus 275 pT~eDLa~L~elGI-KTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~~PVLVH 353 (904)
++++++..+.+.+- -.|||.|+.. + +. . ......| .+++|.. .+......+ ..+.|++||
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~-e---~~--~-~~~hi~g--a~~ip~~--------~~~~~~~~~--~~~~~ivv~ 62 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPA-S---YA--A-LPDHIPG--AIHLDED--------SLDDWLGDL--DRDRPVVVY 62 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHH-H---Hh--c-ccCCCCC--CeeCCHH--------HHHHHHhhc--CCCCCEEEE
Confidence 46677766554432 4699999874 1 10 0 0000111 2333332 344444433 457799999
Q ss_pred CcCCCChHHHHHHHHHHHcCCC
Q 002584 354 SKEGVWRTYAMVSRWRQYMARC 375 (904)
Q Consensus 354 CtAGKDRTGaLvaLlr~~lGV~ 375 (904)
|..|. |+..++..++. +|.+
T Consensus 63 c~~g~-~s~~a~~~l~~-~G~~ 82 (96)
T cd01444 63 CYHGN-SSAQLAQALRE-AGFT 82 (96)
T ss_pred eCCCC-hHHHHHHHHHH-cCCc
Confidence 99887 77755555543 4643
No 100
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=83.90 E-value=0.62 Score=59.08 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhc---CCCCcEEEeCcCCCChHHHH
Q 002584 333 EQVEKFASLVSN---SSKKPLYLHSKEGVWRTYAM 364 (904)
Q Consensus 333 e~I~afleil~d---s~~~PVLVHCtAGKDRTGaL 364 (904)
..+.+|+.-+.. ...+|++|||.||.+|||++
T Consensus 713 t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~f 747 (1087)
T KOG4228|consen 713 TGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCF 747 (1087)
T ss_pred hHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceE
Confidence 455666665543 23589999999999999953
No 101
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=83.43 E-value=2.4 Score=38.39 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=43.1
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002584 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (904)
Q Consensus 274 qpT~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~~PVLVH 353 (904)
.++++++..+.+.+ -.|||+|+.+ + +. .-...| .+++|..... .....+ ..++||+++
T Consensus 3 ~i~~~el~~~~~~~-~~liDvR~~~-e---~~-----~~hi~g--a~~ip~~~~~--------~~~~~~--~~~~~iv~~ 60 (99)
T cd01527 3 TISPNDACELLAQG-AVLVDIREPD-E---YL-----RERIPG--ARLVPLSQLE--------SEGLPL--VGANAIIFH 60 (99)
T ss_pred ccCHHHHHHHHHCC-CEEEECCCHH-H---HH-----hCcCCC--CEECChhHhc--------ccccCC--CCCCcEEEE
Confidence 35778887766667 6899999975 1 11 001122 2455554211 111112 356799999
Q ss_pred CcCCCChHHHHHHHHHH
Q 002584 354 SKEGVWRTYAMVSRWRQ 370 (904)
Q Consensus 354 CtAGKDRTGaLvaLlr~ 370 (904)
|..|. |+..++..++.
T Consensus 61 c~~g~-~s~~~~~~L~~ 76 (99)
T cd01527 61 CRSGM-RTQQNAERLAA 76 (99)
T ss_pred eCCCc-hHHHHHHHHHH
Confidence 99998 87765555543
No 102
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=83.15 E-value=4.7 Score=38.78 Aligned_cols=86 Identities=13% Similarity=0.153 Sum_probs=46.7
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCC----------CC------------H
Q 002584 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTA----------PT------------M 332 (904)
Q Consensus 275 pT~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~----------Ps------------~ 332 (904)
++++++..+.+.++ .|||.|+.. + |. .-..+| -+|+|+..... .. .
T Consensus 1 ~s~~el~~~l~~~~-~iiDvR~~~-e---~~-----~ghIpg--Ainip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (128)
T cd01520 1 ITAEDLLALRKADG-PLIDVRSPK-E---FF-----EGHLPG--AINLPLLDDEERALVGTLYKQQGREAAIELGLELVS 68 (128)
T ss_pred CCHHHHHHHHhcCC-EEEECCCHH-H---hc-----cCcCCC--cEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHh
Confidence 36677766655554 699999875 1 11 011223 25777752210 00 0
Q ss_pred HHHHHHHHHHh---cCCCCcEEEeCc-CCCChHHHHHHHHHHHcCC
Q 002584 333 EQVEKFASLVS---NSSKKPLYLHSK-EGVWRTYAMVSRWRQYMAR 374 (904)
Q Consensus 333 e~I~afleil~---ds~~~PVLVHCt-AGKDRTGaLvaLlr~~lGV 374 (904)
..++++.+.+. -..+.|++|+|. +|. |+..++.++ ..+|.
T Consensus 69 ~~~~~~~~~~~~~~i~~~~~vvvyC~~~G~-rs~~a~~~L-~~~G~ 112 (128)
T cd01520 69 GKLKRILNEAWEARLERDPKLLIYCARGGM-RSQSLAWLL-ESLGI 112 (128)
T ss_pred hhHHHHHHHHHHhccCCCCeEEEEeCCCCc-cHHHHHHHH-HHcCC
Confidence 22334444321 245679999997 566 888666444 44675
No 103
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=82.81 E-value=2.5 Score=39.37 Aligned_cols=95 Identities=14% Similarity=0.095 Sum_probs=47.8
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhh---hHHhhhcCCcEEEEEecCCCC-----CCCHHHHHHHHHHHhcCCC
Q 002584 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAA---IDDAILSGKVELIKIPVEVRT-----APTMEQVEKFASLVSNSSK 347 (904)
Q Consensus 276 T~eDLa~L~elGIKTVIDLRsee~e~~~~~a~---e~~~~e~~GI~yIhIPV~d~~-----~Ps~e~I~afleil~ds~~ 347 (904)
+++++..+.+.+=-.|||.|+.. +-...... +...-...| -+|+|+.... .+.++.+.+++.-+.-..+
T Consensus 2 s~~~l~~~l~~~~~~iiDvR~~~-e~~~~~~~~~~~~~~ghIpg--A~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (118)
T cd01449 2 TAEEVLANLDSGDVQLVDARSPE-RFRGEVPEPRPGLRSGHIPG--AVNIPWTSLLDEDGTFKSPEELRALFAALGITPD 78 (118)
T ss_pred CHHHHHHhcCCCCcEEEeCCCHH-HcCCcCCCCCCCCcCCcCCC--CcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCC
Confidence 45666655444324799999975 11100000 000001122 3455553211 1334555555443322357
Q ss_pred CcEEEeCcCCCChHHHHHHHHHHHcCCC
Q 002584 348 KPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (904)
Q Consensus 348 ~PVLVHCtAGKDRTGaLvaLlr~~lGV~ 375 (904)
.||+++|..|. |+..++..+ ..+|.+
T Consensus 79 ~~iv~yc~~g~-~s~~~~~~l-~~~G~~ 104 (118)
T cd01449 79 KPVIVYCGSGV-TACVLLLAL-ELLGYK 104 (118)
T ss_pred CCEEEECCcHH-HHHHHHHHH-HHcCCC
Confidence 79999999987 877655444 346754
No 104
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=82.33 E-value=3.5 Score=41.31 Aligned_cols=82 Identities=20% Similarity=0.240 Sum_probs=50.0
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCC-cEEEEEecCCCCCCCHHHHHHHHHHHh---cCCCCcEE
Q 002584 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGK-VELIKIPVEVRTAPTMEQVEKFASLVS---NSSKKPLY 351 (904)
Q Consensus 276 T~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~G-I~yIhIPV~d~~~Ps~e~I~afleil~---ds~~~PVL 351 (904)
+-++...|.+.|=+..||.|..+ |- ++.+ -.-|+||+......-...=.+|.+.+. ...+..++
T Consensus 26 ~~~qvk~L~~~~~~~llDVRepe-Ef-----------k~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiI 93 (136)
T KOG1530|consen 26 SVEQVKNLLQHPDVVLLDVREPE-EF-----------KQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEII 93 (136)
T ss_pred EHHHHHHHhcCCCEEEEeecCHH-Hh-----------hccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEE
Confidence 45667777777879999999986 21 1112 357888885322111111123544442 23456899
Q ss_pred EeCcCCCChHHHHHHHHHH
Q 002584 352 LHSKEGVWRTYAMVSRWRQ 370 (904)
Q Consensus 352 VHCtAGKDRTGaLvaLlr~ 370 (904)
|||++|+ |.....-++..
T Consensus 94 f~C~SG~-Rs~~A~~~l~s 111 (136)
T KOG1530|consen 94 FGCASGV-RSLKATKILVS 111 (136)
T ss_pred EEeccCc-chhHHHHHHHH
Confidence 9999999 98866555543
No 105
>PRK14071 6-phosphofructokinase; Provisional
Probab=82.03 E-value=1.9 Score=49.35 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=40.7
Q ss_pred CCcEEEEEcCCchHHHHHHhcCCCCCcEEEEeC-------C---CCcccCCCCcccHHHHHHHHHc
Q 002584 755 RVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVIY 810 (904)
Q Consensus 755 ~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~-------G---sLGFLt~~~~ed~~~~L~~il~ 810 (904)
++|.+|++|||||+-.+.++....++||+||-- | ++||-|..+. ..++++++..
T Consensus 107 ~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTIDNDl~~td~t~Gf~TA~~~--~~~~id~i~~ 170 (360)
T PRK14071 107 GLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTIDNDVGATEVSIGFDTAVNI--ATEALDRLHF 170 (360)
T ss_pred CCCEEEEECChhHHHHHHHHHHhcCCcEEEecccccCCCcCcccCcChhHHHHH--HHHHHHHHHh
Confidence 799999999999987666655434899999853 2 7899887665 4556776654
No 106
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=82.01 E-value=3.6 Score=39.15 Aligned_cols=86 Identities=17% Similarity=0.351 Sum_probs=45.9
Q ss_pred CCCHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHH--HHHHHhcCCCCcE
Q 002584 274 QVTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEK--FASLVSNSSKKPL 350 (904)
Q Consensus 274 qpT~eDLa~L~elGI-KTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~a--fleil~ds~~~PV 350 (904)
.++++++..+.+.+= -.|||+|+.. + +. .....| .+++|....... ...+.. +.... ...++|+
T Consensus 9 ~is~~el~~~~~~~~~~~ivDvR~~~-e---~~-----~~hIpg--ai~ip~~~~~~~-~~~~~~~~~~~~~-~~~~~~i 75 (122)
T cd01526 9 RVSVKDYKNILQAGKKHVLLDVRPKV-H---FE-----ICRLPE--AINIPLSELLSK-AAELKSLQELPLD-NDKDSPI 75 (122)
T ss_pred ccCHHHHHHHHhCCCCeEEEEcCCHH-H---hh-----cccCCC--CeEccHHHHhhh-hhhhhhhhhcccc-cCCCCcE
Confidence 568888887776632 3599999975 1 11 011122 345665421110 000100 11111 1457899
Q ss_pred EEeCcCCCChHHHHHHHHHHHcCC
Q 002584 351 YLHSKEGVWRTYAMVSRWRQYMAR 374 (904)
Q Consensus 351 LVHCtAGKDRTGaLvaLlr~~lGV 374 (904)
+++|.+|. |+...+..++. .|.
T Consensus 76 vv~C~~G~-rs~~aa~~L~~-~G~ 97 (122)
T cd01526 76 YVVCRRGN-DSQTAVRKLKE-LGL 97 (122)
T ss_pred EEECCCCC-cHHHHHHHHHH-cCC
Confidence 99999997 87755544433 565
No 107
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=81.96 E-value=5.6 Score=35.53 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=42.5
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCc
Q 002584 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSK 355 (904)
Q Consensus 276 T~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~~PVLVHCt 355 (904)
+++++..+.+.++ .|||+|+.+ + |. . -..+| .+++|+. .+...+..+ ..++|++++|.
T Consensus 2 ~~~e~~~~~~~~~-~iiD~R~~~-~---~~--~---~hipg--A~~ip~~--------~~~~~~~~~--~~~~~vvl~c~ 59 (90)
T cd01524 2 QWHELDNYRADGV-TLIDVRTPQ-E---FE--K---GHIKG--AINIPLD--------ELRDRLNEL--PKDKEIIVYCA 59 (90)
T ss_pred CHHHHHHHhcCCC-EEEECCCHH-H---Hh--c---CCCCC--CEeCCHH--------HHHHHHHhc--CCCCcEEEEcC
Confidence 5677777776565 599999875 1 11 0 01122 2445542 333333333 34679999999
Q ss_pred CCCChHHHHHHHHHHHcCC
Q 002584 356 EGVWRTYAMVSRWRQYMAR 374 (904)
Q Consensus 356 AGKDRTGaLvaLlr~~lGV 374 (904)
.|. |+..++..+ ...|.
T Consensus 60 ~g~-~a~~~a~~L-~~~G~ 76 (90)
T cd01524 60 VGL-RGYIAARIL-TQNGF 76 (90)
T ss_pred CCh-hHHHHHHHH-HHCCC
Confidence 987 666554444 33564
No 108
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=81.52 E-value=4 Score=47.37 Aligned_cols=87 Identities=22% Similarity=0.214 Sum_probs=45.5
Q ss_pred ccCCCcEEEEEcCCchHHHHHHh-cCC--CCCcEEEEeCCC--Cc---ccCCC-----CcccHHHHHHHHHcCCCCCCce
Q 002584 752 LHERVDFVACLGGDGVILHASNL-FRG--AVPPVISFNLGS--LG---FLTSH-----PFEDYRQDLRQVIYGNNTLDGV 818 (904)
Q Consensus 752 ~~~~~DlVIvLGGDGTlL~Aar~-~~~--~~~PVLGIN~Gs--LG---FLt~~-----~~ed~~~~L~~il~G~y~i~g~ 818 (904)
+....|+|+|.|||||+=.++-- |++ ...||-=+-.|. |+ -|.++ +...+-+++..+++++.
T Consensus 113 ~~t~~Dii~VaGGDGT~~eVVTGi~Rrr~~~~pv~~~P~G~~~l~~~s~l~~vfe~~d~V~h~~~a~~avikde~----- 187 (535)
T KOG4435|consen 113 VDTQEDIIYVAGGDGTIGEVVTGIFRRRKAQLPVGFYPGGYDNLWLKSMLPSVFENSDDVRHACEAAMAVIKDEK----- 187 (535)
T ss_pred hccCCCeEEEecCCCcHHHhhHHHHhcccccCceeeccCccchHhhhhhchhhhccchHHHHHHHHHHHHhcccc-----
Confidence 34455999999999998776542 322 344542222221 22 12211 12234556667777752
Q ss_pred eeeEEEEEEEEEEeCCeecCCccccceeeEE
Q 002584 819 YITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (904)
Q Consensus 819 ~i~~R~rL~~~V~~~G~~~~~~~~~ALNEVv 849 (904)
...+...|...|... ...++||++.
T Consensus 188 ----ksv~~fdv~~~gs~l--~P~fgl~gls 212 (535)
T KOG4435|consen 188 ----KSVYAFDVTTEGSTL--APEFGLGGLS 212 (535)
T ss_pred ----cceEEEEeccCCCcc--ccccccCccc
Confidence 233334444455544 2356888774
No 109
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=81.47 E-value=3.3 Score=47.55 Aligned_cols=85 Identities=13% Similarity=0.177 Sum_probs=47.7
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcC-CcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 002584 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSG-KVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 352 (904)
Q Consensus 274 qpT~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~-GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~~PVLV 352 (904)
.++.+++..+.+.+=-.|||.|+.+ | |. .-... +...+|+|+...... . .+...+....+.|++|
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~-E---~~-----~ghI~~~~gAinIPl~~l~~~-~----~~~~~l~~~~~~~Ivv 337 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPH-E---VL-----LKDLPEGGASLKLPLSAITDD-A----DILHALSPIDGDNVVV 337 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHH-H---hh-----hccCCCCCccEeCcHHHhhcc-h----hhhhhccccCCCcEEE
Confidence 4677887766555423799999986 1 11 00111 134678887532110 0 1122221112339999
Q ss_pred eCcCCCChHHHHHHHHHHHcCC
Q 002584 353 HSKEGVWRTYAMVSRWRQYMAR 374 (904)
Q Consensus 353 HCtAGKDRTGaLvaLlr~~lGV 374 (904)
||.+|. |+..++..++. .|.
T Consensus 338 ~C~sG~-RS~~Aa~~L~~-~G~ 357 (370)
T PRK05600 338 YCASGI-RSADFIEKYSH-LGH 357 (370)
T ss_pred ECCCCh-hHHHHHHHHHH-cCC
Confidence 999998 98876665544 564
No 110
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.27 E-value=2.2 Score=51.30 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=20.7
Q ss_pred CCCCcEEEeCcCCCChHHHHHHHHHH
Q 002584 345 SSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (904)
Q Consensus 345 s~~~PVLVHCtAGKDRTGaLvaLlr~ 370 (904)
....||||||.-|.|||.=+++|..+
T Consensus 372 ~~~~sVlVHCSDGWDRT~QlvsLA~L 397 (717)
T KOG4471|consen 372 SESRSVLVHCSDGWDRTAQLVSLAML 397 (717)
T ss_pred cCCceEEEEcCCCccchHHHHHHHHH
Confidence 55679999999999999955555443
No 111
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=79.36 E-value=1.6 Score=48.88 Aligned_cols=54 Identities=24% Similarity=0.389 Sum_probs=40.5
Q ss_pred CCCcEEEEEcCCchHHHHHHhcCCCCCcEEEEeC-------C---CCcccCCCCcccHHHHHHHHH
Q 002584 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 809 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~-------G---sLGFLt~~~~ed~~~~L~~il 809 (904)
-++|.+|++|||||+-.|..+....++||+||-. | ++||-|..+ .+.++++++.
T Consensus 90 ~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl~~td~s~GfdTA~~--~~~~~i~~i~ 153 (301)
T TIGR02482 90 LGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIPGTDYTIGFDTALN--TIIDAVDKIR 153 (301)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCCcCcccCcChhHHHH--HHHHHHHHHH
Confidence 3789999999999998887776656899999964 3 788888653 3344555554
No 112
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=79.34 E-value=2.5 Score=48.25 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=21.3
Q ss_pred CCCCcEEEeCcCCCChHHHHHHHHHH
Q 002584 345 SSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (904)
Q Consensus 345 s~~~PVLVHCtAGKDRTGaLvaLlr~ 370 (904)
..+.+|||||..|.|||..+.+|...
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~sL~ql 254 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSSLAQL 254 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHHHHHH
Confidence 46779999999999999988888765
No 113
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=78.22 E-value=6.9 Score=37.58 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=19.4
Q ss_pred CCCCcEEEeCc-CCCChHHHHHHHHHH
Q 002584 345 SSKKPLYLHSK-EGVWRTYAMVSRWRQ 370 (904)
Q Consensus 345 s~~~PVLVHCt-AGKDRTGaLvaLlr~ 370 (904)
..+.+|+|||. +|. |+..++..++.
T Consensus 66 ~~~~~vv~yC~~sg~-rs~~aa~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSSK-RGPRMARHLRN 91 (121)
T ss_pred CCCCEEEEECCCccc-cHHHHHHHHHH
Confidence 35789999997 887 98877766654
No 114
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=77.93 E-value=7.3 Score=36.02 Aligned_cols=78 Identities=12% Similarity=0.130 Sum_probs=43.4
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeC
Q 002584 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHS 354 (904)
Q Consensus 275 pT~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~~PVLVHC 354 (904)
++++++..+.+.+=-.|||+|+.. + +. .-...| -+++|. ..+..++..+ ..+.|++|+|
T Consensus 7 is~~el~~~l~~~~~~ivDvR~~~-e---~~-----~ghi~g--A~~ip~--------~~l~~~~~~~--~~~~~ivv~c 65 (108)
T PRK00162 7 INVEQAHQKLQEGGAVLVDIRDPQ-S---FA-----MGHAPG--AFHLTN--------DSLGAFMRQA--DFDTPVMVMC 65 (108)
T ss_pred cCHHHHHHHHHcCCCEEEEcCCHH-H---Hh-----cCCCCC--CeECCH--------HHHHHHHHhc--CCCCCEEEEe
Confidence 577777665444325699999875 1 11 001112 233443 2444455444 3577999999
Q ss_pred cCCCChHHHHHHHHHHHcCCC
Q 002584 355 KEGVWRTYAMVSRWRQYMARC 375 (904)
Q Consensus 355 tAGKDRTGaLvaLlr~~lGV~ 375 (904)
..|. |+..++..++ ..|.+
T Consensus 66 ~~g~-~s~~a~~~L~-~~G~~ 84 (108)
T PRK00162 66 YHGN-SSQGAAQYLL-QQGFD 84 (108)
T ss_pred CCCC-CHHHHHHHHH-HCCch
Confidence 9998 7654444433 34643
No 115
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=77.58 E-value=7 Score=43.98 Aligned_cols=87 Identities=13% Similarity=0.111 Sum_probs=48.4
Q ss_pred EcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcE
Q 002584 271 RGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPL 350 (904)
Q Consensus 271 RSGqpT~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~~PV 350 (904)
++..++++++..+.+.+=-+|||.|+.. + |. .-...| -+|+|+..... .++. +.+.+....++||
T Consensus 110 ~~~~is~~el~~~l~~~~~vlIDVR~~~-E---~~-----~GhI~G--Ai~ip~~~~~~-~~~~---l~~~~~~~kdk~I 174 (314)
T PRK00142 110 VGTYLKPKEVNELLDDPDVVFIDMRNDY-E---YE-----IGHFEN--AIEPDIETFRE-FPPW---VEENLDPLKDKKV 174 (314)
T ss_pred CCcccCHHHHHHHhcCCCeEEEECCCHH-H---Hh-----cCcCCC--CEeCCHHHhhh-hHHH---HHHhcCCCCcCeE
Confidence 3446888888766554334799999874 1 10 011122 35566542111 0111 1112222356899
Q ss_pred EEeCcCCCChHHHHHHHHHHHcCC
Q 002584 351 YLHSKEGVWRTYAMVSRWRQYMAR 374 (904)
Q Consensus 351 LVHCtAGKDRTGaLvaLlr~~lGV 374 (904)
+|||++|. |....+.+++. .|.
T Consensus 175 vvyC~~G~-Rs~~aa~~L~~-~Gf 196 (314)
T PRK00142 175 VMYCTGGI-RCEKASAWMKH-EGF 196 (314)
T ss_pred EEECCCCc-HHHHHHHHHHH-cCC
Confidence 99999999 99876665544 453
No 116
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=77.13 E-value=2.9 Score=47.21 Aligned_cols=54 Identities=24% Similarity=0.326 Sum_probs=40.1
Q ss_pred CCCcEEEEEcCCchHHHHHHhcCCCCCcEEEEeC-------C---CCcccCCCCcccHHHHHHHHHc
Q 002584 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVIY 810 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~-------G---sLGFLt~~~~ed~~~~L~~il~ 810 (904)
-++|.+|++|||||+-.|..+.. .++||+||-. | ++||-|..+. +.+.++.+..
T Consensus 93 ~~Id~LivIGGdgS~~~a~~L~~-~gi~vigiPkTIDNDl~gtd~tiGfdTA~~~--~~~~i~~i~~ 156 (324)
T TIGR02483 93 LGLDALIAIGGDGTLGIARRLAD-KGLPVVGVPKTIDNDLEATDYTFGFDTAVEI--ATEALDRLHT 156 (324)
T ss_pred cCCCEEEEECCchHHHHHHHHHh-cCCCEEeeccccCCCCcCCccCcCHHHHHHH--HHHHHHHHHH
Confidence 46899999999999977665543 5699999964 3 6888887654 4556666654
No 117
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=76.87 E-value=8 Score=36.40 Aligned_cols=68 Identities=13% Similarity=0.186 Sum_probs=38.6
Q ss_pred cCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCcCCCChHHHHH
Q 002584 286 KGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMV 365 (904)
Q Consensus 286 lGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~~PVLVHCtAGKDRTGaLv 365 (904)
.--+.+||.|+.+ + +. .-...| -+++|.. .+......+....+.|++++|..|. |+...+
T Consensus 16 ~~~~~lIDvR~~~-e---f~-----~ghIpg--Ainip~~--------~l~~~l~~~~~~~~~~vvlyC~~G~-rS~~aa 75 (101)
T TIGR02981 16 FAAEHWIDVRIPE-Q---YQ-----QEHIQG--AINIPLK--------EIKEHIATAVPDKNDTVKLYCNAGR-QSGMAK 75 (101)
T ss_pred ccCCEEEECCCHH-H---Hh-----cCCCCC--CEECCHH--------HHHHHHHHhCCCCCCeEEEEeCCCH-HHHHHH
Confidence 3567899999875 1 11 011122 2445542 3333333222234678999999998 888776
Q ss_pred HHHHHHcCC
Q 002584 366 SRWRQYMAR 374 (904)
Q Consensus 366 aLlr~~lGV 374 (904)
..+.. +|.
T Consensus 76 ~~L~~-~G~ 83 (101)
T TIGR02981 76 DILLD-MGY 83 (101)
T ss_pred HHHHH-cCC
Confidence 65544 454
No 118
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=76.48 E-value=2.3 Score=49.48 Aligned_cols=55 Identities=27% Similarity=0.316 Sum_probs=39.7
Q ss_pred CCCcEEEEEcCCchHHHHHHhcC-----CCCCcEEEEeC-------C---CCcccCCCCcccHHHHHHHHHc
Q 002584 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVIY 810 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN~-------G---sLGFLt~~~~ed~~~~L~~il~ 810 (904)
.++|.+|++|||||+-.|.++.. +.++||+||-- | ++||-|..+ ...++++++..
T Consensus 111 ~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~Gf~TA~~--~~~~ai~~l~~ 180 (403)
T PRK06555 111 DGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAE--QGARFFDNVIN 180 (403)
T ss_pred cCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcCHHHHHH--HHHHHHHHHHH
Confidence 37999999999999998877653 34799999853 2 688887653 33455565543
No 119
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=75.91 E-value=2.6 Score=47.51 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=38.5
Q ss_pred CCCcEEEEEcCCchHHHHHHhcCCCCCcEEEEeC-------C---CCcccCCCCcccHHHHHHHHH
Q 002584 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 809 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~-------G---sLGFLt~~~~ed~~~~L~~il 809 (904)
.++|.+|++|||||+-.|.++.. .++||+||-- | ++||-|..+. +.+.++++.
T Consensus 91 ~~Id~Li~IGGdgs~~~a~~L~e-~~i~vigiPkTIDNDi~gtd~t~Gf~TA~~~--~~~~i~~i~ 153 (317)
T cd00763 91 HGIDALVVIGGDGSYMGAMRLTE-HGFPCVGLPGTIDNDIPGTDYTIGFDTALNT--VVEAIDRIR 153 (317)
T ss_pred cCCCEEEEECCchHHHHHHHHHH-cCCCEEEecccccCCCCCCccCCCHHHHHHH--HHHHHHHHH
Confidence 47999999999999988776554 4799999853 3 7888886543 334455554
No 120
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=75.33 E-value=6.6 Score=37.24 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=36.4
Q ss_pred CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCcCCCChHHHHHHH
Q 002584 288 YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSR 367 (904)
Q Consensus 288 IKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~~PVLVHCtAGKDRTGaLvaL 367 (904)
=++|||.|+.+ + |. .-...| -+++|+. ++...++.+....+.|++++|.+|. |+..++..
T Consensus 20 ~~~lIDvR~~~-e---f~-----~ghIpG--AiniP~~--------~l~~~l~~l~~~~~~~IVlyC~~G~-rS~~aa~~ 79 (104)
T PRK10287 20 AEHWIDVRVPE-Q---YQ-----QEHVQG--AINIPLK--------EVKERIATAVPDKNDTVKLYCNAGR-QSGQAKEI 79 (104)
T ss_pred CCEEEECCCHH-H---Hh-----cCCCCc--cEECCHH--------HHHHHHHhcCCCCCCeEEEEeCCCh-HHHHHHHH
Confidence 37899999975 1 11 001112 2455543 3333333332234578999999996 87766555
Q ss_pred HHHHcCC
Q 002584 368 WRQYMAR 374 (904)
Q Consensus 368 lr~~lGV 374 (904)
+.. +|.
T Consensus 80 L~~-~G~ 85 (104)
T PRK10287 80 LSE-MGY 85 (104)
T ss_pred HHH-cCC
Confidence 533 454
No 121
>PRK14072 6-phosphofructokinase; Provisional
Probab=74.34 E-value=2.7 Score=49.08 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=37.5
Q ss_pred CCCcEEEEEcCCchHHHHHHhcC-----CCCCcEEEEeC----------CCCcccCCCCcccHHHHHHHH
Q 002584 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQV 808 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN~----------GsLGFLt~~~~ed~~~~L~~i 808 (904)
-++|.+|++|||||+-.|.++.. +..+||+||-- -++||-|..+ .+.+++.++
T Consensus 102 ~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~--~i~~ai~~l 169 (416)
T PRK14072 102 HDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAK--YIATSVLEA 169 (416)
T ss_pred cCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHH--HHHHHHHHH
Confidence 47999999999999988877553 34599999853 2678777643 223445554
No 122
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=74.09 E-value=2.8 Score=49.51 Aligned_cols=54 Identities=22% Similarity=0.383 Sum_probs=38.7
Q ss_pred CCCcEEEEEcCCchHHHHHHhcC-----CCCCcEEEEeC----------CCCcccCCCCcccHHHHHHHHH
Q 002584 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQVI 809 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN~----------GsLGFLt~~~~ed~~~~L~~il 809 (904)
-++|.+|+||||||+-.|..+.. +..+||+||-- =++||-|.++ ...++++++.
T Consensus 175 ~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~--~~~~aI~~~~ 243 (459)
T PTZ00286 175 HGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVE--EAQNAIRAAY 243 (459)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHH--HHHHHHHHHH
Confidence 47999999999999988877654 34689999853 2788888654 2334455443
No 123
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=72.99 E-value=7 Score=44.50 Aligned_cols=88 Identities=16% Similarity=0.149 Sum_probs=52.2
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-ccCCCcEEEEEcCCchH
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d-~~~~~DlVIvLGGDGTl 768 (904)
.++++||....-.......++.+.|.+ .++++.+...+. ..|....+... ... ...++|+||.||| |++
T Consensus 23 ~~r~livt~~~~~~~g~~~~v~~~L~~-~gi~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS~ 92 (375)
T cd08194 23 GKRPLIVTDKVMVKLGLVDKLTDSLKK-EGIESAIFDDVV----SEPTDESVEEG----VKLAKEGGCDVIIALGG-GSP 92 (375)
T ss_pred CCeEEEEcCcchhhcchHHHHHHHHHH-CCCeEEEECCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 478999986553323356778888864 577665433221 11111111000 001 1347899999999 999
Q ss_pred HHHHHhcC-------------------CCCCcEEEEeC
Q 002584 769 LHASNLFR-------------------GAVPPVISFNL 787 (904)
Q Consensus 769 L~Aar~~~-------------------~~~~PVLGIN~ 787 (904)
+-+++.+. ...+|++.|.+
T Consensus 93 ~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 130 (375)
T cd08194 93 IDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPT 130 (375)
T ss_pred HHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECC
Confidence 99888653 23578888875
No 124
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=72.38 E-value=3.3 Score=48.81 Aligned_cols=134 Identities=18% Similarity=0.241 Sum_probs=71.4
Q ss_pred ccccCCchhhHhcccccCCCEEEEEecCCh-hHHH-HHHHHHHHHhcCCC-eEEEEcCC-hhhhhhc-------------
Q 002584 672 LAFTHPSTQQQMLMWKTTPRTVLVLKKPGP-ALME-EAKEVASFLYHQEK-MNILVEPD-VHDIFAR------------- 734 (904)
Q Consensus 672 ~~~~~ps~~~~~l~w~~~pk~VlIv~K~~~-~~~~-~a~el~~~L~~~~g-i~V~ve~~-v~~~l~~------------- 734 (904)
++|.-..+++ .+-++....+++|+.--++ +-+. ....++..+.+..+ .+|+--.+ ....+..
T Consensus 63 ~~~~~agpr~-~i~f~p~~~riaIvtsGG~~PGmN~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v 141 (443)
T PRK06830 63 PSFEKAGPRE-KIYFDPSKVKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVV 141 (443)
T ss_pred chhhhcCCcc-eeEEcCcccEEEEECCCCCchHHHHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEECCHHHH
Confidence 3443333333 3556666678999988775 4343 34566666544334 56664332 2222110
Q ss_pred -----CCCCccceee-eccCcccc-----cCCCcEEEEEcCCchHHHHHHhcC-----CCCCcEEEEeC----------C
Q 002584 735 -----IPGFGFVQTF-YLQDTSDL-----HERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------G 788 (904)
Q Consensus 735 -----~~~~~~~~~~-~~~~~~d~-----~~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN~----------G 788 (904)
.++ ....+- ..++.+.+ .-++|.+|++|||||+-.|.++.. +..+||+||-- =
T Consensus 142 ~~i~~~GG-TiLGTsR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~ 220 (443)
T PRK06830 142 ADIHEFGG-TILGSSRGPQDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQK 220 (443)
T ss_pred hhHHhCCC-ccccCCCCchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCccc
Confidence 000 000000 00111111 247999999999999988877553 34689999953 2
Q ss_pred CCcccCCCCcccHHHHHHHHH
Q 002584 789 SLGFLTSHPFEDYRQDLRQVI 809 (904)
Q Consensus 789 sLGFLt~~~~ed~~~~L~~il 809 (904)
++||-|.++. ..++++++.
T Consensus 221 S~GFdTAv~~--a~~aI~~~~ 239 (443)
T PRK06830 221 SFGFETAVEK--ATEAIRCAH 239 (443)
T ss_pred CCCHHHHHHH--HHHHHHHHH
Confidence 6788776532 334444443
No 125
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=72.13 E-value=3.4 Score=47.28 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=40.7
Q ss_pred CCCcEEEEEcCCchHHHHHHhcCCCCCcEEEEeC-------C---CCcccCCCCcccHHHHHHHHH
Q 002584 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 809 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~-------G---sLGFLt~~~~ed~~~~L~~il 809 (904)
..+|.+|++|||||+-.|..+.....+|++||-- + ++||.|..+. +.+++.++.
T Consensus 93 ~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvPkTIDNDi~~td~tiGfdTA~~~--~~eaid~l~ 156 (347)
T COG0205 93 LGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKTIDNDISGTDFTIGFDTALET--AVEAIDNLR 156 (347)
T ss_pred cCCCEEEEECCCChHHHHHHHHHhcCCcEEecCCCccCCCcccccCccHHHHHHH--HHHHHHHHH
Confidence 4799999999999999998887666699999853 2 7899887543 334555554
No 126
>PLN02564 6-phosphofructokinase
Probab=70.28 E-value=3.9 Score=48.65 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=37.4
Q ss_pred CCCcEEEEEcCCchHHHHHHhcC-----CCCCcEEEEeC----------CCCcccCCCCcccHHHHHHHHH
Q 002584 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQVI 809 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN~----------GsLGFLt~~~~ed~~~~L~~il 809 (904)
-++|.+|+||||||+-.|..+.. +..++|+||-- =++||-|.++ .+.++++++.
T Consensus 175 ~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv~--~~~~aI~~i~ 243 (484)
T PLN02564 175 RGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE--EAQRAINAAH 243 (484)
T ss_pred hCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHHH--HHHHHHHHHH
Confidence 37999999999999988877654 33455999853 1678777643 3344555553
No 127
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=69.52 E-value=13 Score=33.87 Aligned_cols=87 Identities=15% Similarity=0.101 Sum_probs=43.5
Q ss_pred CCHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCC--CCHHHHHHHHHHHhcCCCCcE
Q 002584 275 VTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTA--PTMEQVEKFASLVSNSSKKPL 350 (904)
Q Consensus 275 pT~eDLa~L~elG--IKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~--Ps~e~I~afleil~ds~~~PV 350 (904)
++++++..+.+.+ --.|||.|+.. + |. .-...| -+++|...... .....+.. ...+....+.||
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~-e---~~-----~ghIpg--A~~ip~~~~~~~~~~~~~~~~-~~~~~~~~~~~v 68 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSP-D---FR-----RGHIEG--SINIPFSSVFLKEGELEQLPT-VPRLENYKGKII 68 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHH-H---Hh-----CCccCC--CEeCCHHHhcccccccccccc-hHHHHhhcCCeE
Confidence 3567777666553 23789999864 1 11 011223 24556532110 00011100 111111236799
Q ss_pred EEeCcCCCChHHHHHHHHHHHcCCC
Q 002584 351 YLHSKEGVWRTYAMVSRWRQYMARC 375 (904)
Q Consensus 351 LVHCtAGKDRTGaLvaLlr~~lGV~ 375 (904)
+++|..|. |+..++..+ ..+|.+
T Consensus 69 v~~c~~g~-~s~~~a~~L-~~~G~~ 91 (105)
T cd01525 69 VIVSHSHK-HAALFAAFL-VKCGVP 91 (105)
T ss_pred EEEeCCCc-cHHHHHHHH-HHcCCC
Confidence 99999998 877655544 335653
No 128
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=69.29 E-value=8.3 Score=39.85 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCchHHH------HHHhcCCCCCcEEEEeCCC
Q 002584 755 RVDFVACLGGDGVILH------ASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 755 ~~DlVIvLGGDGTlL~------Aar~~~~~~~PVLGIN~Gs 789 (904)
.+|.||..||-|..-. ..+.+ ...+|||||-+|+
T Consensus 43 ~~d~iilsgGpg~p~~~~~~~~~i~~~-~~~~PvLGIC~G~ 82 (188)
T TIGR00566 43 LPLLIVISPGPCTPNEAGISLEAIRHF-AGKLPILGVCLGH 82 (188)
T ss_pred CCCEEEEcCCCCChhhcchhHHHHHHh-ccCCCEEEECHHH
Confidence 4799999999988633 34444 4579999999885
No 129
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=68.83 E-value=19 Score=41.19 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=20.1
Q ss_pred CCCcEEEeCc-CCCChHHHHHHHHHHHcCC
Q 002584 346 SKKPLYLHSK-EGVWRTYAMVSRWRQYMAR 374 (904)
Q Consensus 346 ~~~PVLVHCt-AGKDRTGaLvaLlr~~lGV 374 (904)
.+.+++++|. .|. |++.++.++.. +|.
T Consensus 87 ~~~~ivvyC~rgG~-RS~~aa~~L~~-~G~ 114 (345)
T PRK11784 87 ANPRGLLYCWRGGL-RSGSVQQWLKE-AGI 114 (345)
T ss_pred CCCeEEEEECCCCh-HHHHHHHHHHH-cCC
Confidence 5779999996 566 99987766654 575
No 130
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=68.45 E-value=8.3 Score=43.90 Aligned_cols=76 Identities=22% Similarity=0.248 Sum_probs=43.8
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-ccCCCcEEEEEcCCchH
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d-~~~~~DlVIvLGGDGTl 768 (904)
.++++||....-.......++...|.+ .++++.+-..+. ..|....+... ... ...++|+||.+|| |++
T Consensus 26 ~~~~livt~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-Gs~ 95 (376)
T cd08193 26 AKRVLVVTDPGILKAGLIDPLLASLEA-AGIEVTVFDDVE----ADPPEAVVEAA----VEAARAAGADGVIGFGG-GSS 95 (376)
T ss_pred CCeEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEECCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 378999986553223356778888854 566665433221 11111111100 001 1247899999999 999
Q ss_pred HHHHHhc
Q 002584 769 LHASNLF 775 (904)
Q Consensus 769 L~Aar~~ 775 (904)
+-+++..
T Consensus 96 iD~aK~i 102 (376)
T cd08193 96 MDVAKLV 102 (376)
T ss_pred HHHHHHH
Confidence 9988765
No 131
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=68.02 E-value=10 Score=40.21 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=46.3
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHH--
Q 002584 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL-- 769 (904)
Q Consensus 692 ~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL-- 769 (904)
+|+++-.-+ .....+.+||.+ .|+.+.+.+.....+ .+..+...++|.||+.||.|..-
T Consensus 2 ~ilv~d~~~----~~~~~~~~~l~~-~G~~~~~~~~~~~~~--------------~~~~~~~~~~dgliisGGp~~~~~~ 62 (214)
T PRK07765 2 RILVVDNYD----SFVFNLVQYLGQ-LGVEAEVWRNDDPRL--------------ADEAAVAAQFDGVLLSPGPGTPERA 62 (214)
T ss_pred eEEEEECCC----cHHHHHHHHHHH-cCCcEEEEECCCcCH--------------HHHHHhhcCCCEEEECCCCCChhhc
Confidence 466665553 223457788864 577766533211000 00112234689999999998653
Q ss_pred ----HHHHhcCCCCCcEEEEeCCC
Q 002584 770 ----HASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 770 ----~Aar~~~~~~~PVLGIN~Gs 789 (904)
..++.+....+|||||-+|+
T Consensus 63 ~~~~~~i~~~~~~~~PiLGIC~G~ 86 (214)
T PRK07765 63 GASIDMVRACAAAGTPLLGVCLGH 86 (214)
T ss_pred chHHHHHHHHHhCCCCEEEEccCH
Confidence 23344445689999999985
No 132
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=67.88 E-value=8.9 Score=43.73 Aligned_cols=75 Identities=17% Similarity=0.279 Sum_probs=43.5
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-ccCCCcEEEEEcCCchHH
Q 002584 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVIL 769 (904)
Q Consensus 691 k~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d-~~~~~DlVIvLGGDGTlL 769 (904)
++++||....-.......++.+.|.+ .++++.+..++.. .|....+... ... ...++|+||.||| |+++
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~-~~~~~~~f~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIavGG-GS~i 98 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDE-AGIDYVIYDGVKP----NPTITNVKDG----LAVFKKEGCDFIISIGG-GSPH 98 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHH-cCCeEEEeCCCCC----CCCHHHHHHH----HHHHHhcCCCEEEEeCC-cHHH
Confidence 68999986553223456778888854 5666654333210 1111111000 001 1247899999999 9999
Q ss_pred HHHHhc
Q 002584 770 HASNLF 775 (904)
Q Consensus 770 ~Aar~~ 775 (904)
-+++.+
T Consensus 99 D~aK~i 104 (377)
T cd08176 99 DCAKAI 104 (377)
T ss_pred HHHHHH
Confidence 988865
No 133
>PLN02884 6-phosphofructokinase
Probab=67.74 E-value=4 Score=47.69 Aligned_cols=124 Identities=16% Similarity=0.212 Sum_probs=69.0
Q ss_pred hcccccCCCEEEEEecCCh-hHH-HHHHHHHHHHhcCCCe-EEEEcC-ChhhhhhcCC-CC----ccce-------eeec
Q 002584 683 MLMWKTTPRTVLVLKKPGP-ALM-EEAKEVASFLYHQEKM-NILVEP-DVHDIFARIP-GF----GFVQ-------TFYL 746 (904)
Q Consensus 683 ~l~w~~~pk~VlIv~K~~~-~~~-~~a~el~~~L~~~~gi-~V~ve~-~v~~~l~~~~-~~----~~~~-------~~~~ 746 (904)
.+-|+....+|+|+.--++ +=+ ...+.++.++.. .|+ +|+--. -....+.... .. ..+. ++..
T Consensus 46 ~~~~~p~~~rIaIltsGGdaPGmNa~Iravv~~a~~-~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LG 124 (411)
T PLN02884 46 KIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLEI-YGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGSLLG 124 (411)
T ss_pred eEEeCCcceEEEEEcCCCCCccHhHHHHHHHHHHHH-cCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCCceec
Confidence 4556777789999998775 333 334566666543 466 566322 2222211100 00 0000 0000
Q ss_pred -----cCccc----c-cCCCcEEEEEcCCchHHHHHHhcC-----CCCCcEEEEeC-------C---CCcccCCCCcccH
Q 002584 747 -----QDTSD----L-HERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G---SLGFLTSHPFEDY 801 (904)
Q Consensus 747 -----~~~~d----~-~~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN~-------G---sLGFLt~~~~ed~ 801 (904)
..... + .-++|.+|++|||||+-.|.++.. +..+||+||-- | ++||-|..+. +
T Consensus 125 tsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~~--~ 202 (411)
T PLN02884 125 VSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEE--A 202 (411)
T ss_pred cCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHHH--H
Confidence 00111 1 247999999999999988777543 24599999943 2 6888886543 4
Q ss_pred HHHHHHHH
Q 002584 802 RQDLRQVI 809 (904)
Q Consensus 802 ~~~L~~il 809 (904)
.++++++.
T Consensus 203 ~~ai~~l~ 210 (411)
T PLN02884 203 QRAINSAY 210 (411)
T ss_pred HHHHHHHH
Confidence 45566554
No 134
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=67.33 E-value=12 Score=42.46 Aligned_cols=92 Identities=16% Similarity=0.107 Sum_probs=50.6
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHH
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL 769 (904)
.++++||....-.. ....++.+.|.+..++.+.+-++... .|....+......-.+.-..+.|+||.+|| |+++
T Consensus 23 ~~k~livtd~~v~~-~~~~~v~~~L~~~~~~~~~~~~~~e~----~k~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv~ 96 (344)
T cd08169 23 FDQYFFISDSGVAD-LIAHYIAEYLSKILPVHILVIEGGEE----YKTFETVTRILERAIALGANRRTAIVAVGG-GATG 96 (344)
T ss_pred CCeEEEEECccHHH-HHHHHHHHHHHhhcCceEEEeCCCCC----CCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHH
Confidence 47889988755322 35567778875313565554333211 111111110000000001246899999999 9999
Q ss_pred HHHHhcC---CCCCcEEEEeC
Q 002584 770 HASNLFR---GAVPPVISFNL 787 (904)
Q Consensus 770 ~Aar~~~---~~~~PVLGIN~ 787 (904)
-++.... ...+|++-|.+
T Consensus 97 D~ak~vA~~~~rgip~i~VPT 117 (344)
T cd08169 97 DVAGFVASTLFRGIAFIRVPT 117 (344)
T ss_pred HHHHHHHHHhccCCcEEEecC
Confidence 8887653 34778888876
No 135
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=67.26 E-value=36 Score=34.58 Aligned_cols=99 Identities=10% Similarity=0.117 Sum_probs=47.0
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhh----HHhhhcCCcEEEEEec---CCCCCCCHHHHHHHHH-HHhcC
Q 002584 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAI----DDAILSGKVELIKIPV---EVRTAPTMEQVEKFAS-LVSNS 345 (904)
Q Consensus 274 qpT~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e----~~~~e~~GI~yIhIPV---~d~~~Ps~e~I~afle-il~ds 345 (904)
.++++++..+.+.+=..|||.|+.+.....+.... ...-...| -+++|. .....+..+.+...+. +....
T Consensus 37 ~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPG--Av~ip~~~~~~l~~~~~~~~~~~l~~~~~~~ 114 (162)
T TIGR03865 37 VLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPG--SLWLPNTGYGNLAPAWQAYFRRGLERATGGD 114 (162)
T ss_pred ccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCC--cEEecccCCCCCCCchhHHHHHHHHHhcCCC
Confidence 57888887776665456999997541000010000 00001233 234443 2112222222322222 11113
Q ss_pred CCCcEEEeCcCCCChHHHHHHHHHHHcCCC
Q 002584 346 SKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (904)
Q Consensus 346 ~~~PVLVHCtAGKDRTGaLvaLlr~~lGV~ 375 (904)
.+.||+++|..|.-|+..++.++ ..+|.+
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L-~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRA-LAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHH-HhcCCc
Confidence 57899999999875666544444 335643
No 136
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=67.16 E-value=2.3 Score=47.06 Aligned_cols=54 Identities=28% Similarity=0.423 Sum_probs=37.6
Q ss_pred CCCcEEEEEcCCchHHHHHHhcCCCCCcEEEEeC-------C---CCcccCCCCcccHHHHHHHHH
Q 002584 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 809 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~-------G---sLGFLt~~~~ed~~~~L~~il 809 (904)
.++|.+|++|||||+-.|..+.....+||+||-. | ++||-|..+. +.+.++++.
T Consensus 91 ~~Id~Li~IGG~gs~~~a~~L~~~~~i~vigiPkTIDNDi~gtd~siGf~TA~~~--~~~~i~~i~ 154 (282)
T PF00365_consen 91 LGIDALIVIGGDGSMKGAHKLSEEFGIPVIGIPKTIDNDIPGTDYSIGFDTAVNY--IAEAIDNIK 154 (282)
T ss_dssp TTESEEEEEESHHHHHHHHHHHHHHHSEEEEEEEETTSSCTTSSS-BTHHHHHHH--HHHHHHHHH
T ss_pred hCCCEEEEecCCCHHHHHHHHHhcCceEEEEEeccccCCcCCCCCCcccCchhHH--HHHHHHHHH
Confidence 4799999999999987776665455689999853 3 6888776542 344555554
No 137
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=67.00 E-value=9.7 Score=34.36 Aligned_cols=29 Identities=3% Similarity=-0.079 Sum_probs=20.3
Q ss_pred CCCCcEEEeCcCCCChHHHHHHHHHHHcCCC
Q 002584 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (904)
Q Consensus 345 s~~~PVLVHCtAGKDRTGaLvaLlr~~lGV~ 375 (904)
..+.+|+|+|..|. |+..++..+ ..+|.+
T Consensus 54 ~~~~~ivv~c~~g~-~s~~~~~~l-~~~G~~ 82 (96)
T cd01529 54 GRATRYVLTCDGSL-LARFAAQEL-LALGGK 82 (96)
T ss_pred CCCCCEEEEeCChH-HHHHHHHHH-HHcCCC
Confidence 45679999999887 887655544 445654
No 138
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=66.71 E-value=22 Score=31.90 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=18.1
Q ss_pred CCCCcEEEeCcCCCChHHHHHHHHHHHcCC
Q 002584 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (904)
Q Consensus 345 s~~~PVLVHCtAGKDRTGaLvaLlr~~lGV 374 (904)
..+.|++|||..|. |+-.++..+ ..+|.
T Consensus 59 ~~~~~ivv~c~~g~-~s~~~~~~l-~~~G~ 86 (103)
T cd01447 59 AEDKPFVFYCASGW-RSALAGKTL-QDMGL 86 (103)
T ss_pred CCCCeEEEEcCCCC-cHHHHHHHH-HHcCh
Confidence 34679999999986 765443333 33564
No 139
>PRK03202 6-phosphofructokinase; Provisional
Probab=66.57 E-value=5.3 Score=45.13 Aligned_cols=53 Identities=26% Similarity=0.375 Sum_probs=38.5
Q ss_pred CCCcEEEEEcCCchHHHHHHhcCCCCCcEEEEeC-------C---CCcccCCCCcccHHHHHHHHH
Q 002584 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 809 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~-------G---sLGFLt~~~~ed~~~~L~~il 809 (904)
-++|.+|++|||||+-.|.++. ..++||+||-. | ++||-|..+. +.+.++++.
T Consensus 92 ~~Id~Li~IGGd~s~~~a~~L~-e~~i~vigiPkTIDNDl~gtd~s~Gf~TA~~~--~~~~i~~l~ 154 (320)
T PRK03202 92 LGIDALVVIGGDGSYMGAKRLT-EHGIPVIGLPGTIDNDIAGTDYTIGFDTALNT--AVEAIDRLR 154 (320)
T ss_pred cCCCEEEEeCChHHHHHHHHHH-hcCCcEEEecccccCCCCCCccCcCHHHHHHH--HHHHHHHHH
Confidence 4799999999999998887765 45899999854 3 7888876432 334455443
No 140
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=66.18 E-value=9.2 Score=39.38 Aligned_cols=74 Identities=12% Similarity=0.192 Sum_probs=44.1
Q ss_pred EEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccc-cCCCcEEEEEcCCchH---
Q 002584 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI--- 768 (904)
Q Consensus 693 VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~-~~~~DlVIvLGGDGTl--- 768 (904)
||||-.-+. ....++++|.+ .+.+|.+-+.-.- +.+++ ...+|.||+.||.|..
T Consensus 2 il~id~~ds----f~~nl~~~l~~-~~~~~~v~~~~~~-----------------~~~~~~~~~~~~iilsgGP~~~~~~ 59 (191)
T PRK06774 2 LLLIDNYDS----FTYNLYQYFCE-LGTEVMVKRNDEL-----------------QLTDIEQLAPSHLVISPGPCTPNEA 59 (191)
T ss_pred EEEEECCCc----hHHHHHHHHHH-CCCcEEEEeCCCC-----------------CHHHHHhcCCCeEEEcCCCCChHhC
Confidence 455554442 34567777764 5666665442100 01111 1257999999999984
Q ss_pred ---HHHHHhcCCCCCcEEEEeCCC
Q 002584 769 ---LHASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 769 ---L~Aar~~~~~~~PVLGIN~Gs 789 (904)
+...+.+ ...+|||||-+|+
T Consensus 60 ~~~~~~i~~~-~~~~PiLGIC~G~ 82 (191)
T PRK06774 60 GISLAVIRHF-ADKLPILGVCLGH 82 (191)
T ss_pred CCchHHHHHh-cCCCCEEEECHHH
Confidence 3333444 3479999999885
No 141
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=65.97 E-value=8.1 Score=44.75 Aligned_cols=76 Identities=20% Similarity=0.254 Sum_probs=50.5
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcc-cccCCCcEEEEEcCCchH
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTS-DLHERVDFVACLGGDGVI 768 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~-d~~~~~DlVIvLGGDGTl 768 (904)
-++++||.-++-.....+.++.+.|.. .++++.+..++.. .|....+.. ..+ --..++|.||.||| |..
T Consensus 29 ~~r~liVTd~~~~~~g~~~~v~~~L~~-~~i~~~if~~v~p----~P~~~~v~~----~~~~~~~~~~D~iIalGG-GS~ 98 (377)
T COG1454 29 AKRALIVTDRGLAKLGLLDKVLDSLDA-AGIEYEVFDEVEP----EPTIETVEA----GAEVAREFGPDTIIALGG-GSV 98 (377)
T ss_pred CCceEEEECCccccchhHHHHHHHHHh-cCCeEEEecCCCC----CCCHHHHHH----HHHHHHhcCCCEEEEeCC-ccH
Confidence 478999999986666778899999965 5777766555421 121111100 001 11357999999999 999
Q ss_pred HHHHHhc
Q 002584 769 LHASNLF 775 (904)
Q Consensus 769 L~Aar~~ 775 (904)
+-+++..
T Consensus 99 ~D~AK~i 105 (377)
T COG1454 99 IDAAKAI 105 (377)
T ss_pred HHHHHHH
Confidence 9988864
No 142
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=65.97 E-value=8.9 Score=44.02 Aligned_cols=77 Identities=16% Similarity=0.075 Sum_probs=44.5
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-ccCCCcEEEEEcCCchH
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d-~~~~~DlVIvLGGDGTl 768 (904)
-++++||.-..-.....+.++.+.|.+ .++.+.+-.++. ..|....+... .+. ...++|+||.+|| |..
T Consensus 31 ~~~~livt~~~~~~~g~~~~v~~~L~~-~~i~~~~f~~v~----~np~~~~v~~~----~~~~~~~~~D~IiaiGG-GS~ 100 (383)
T PRK09860 31 FTRTLIVTDNMLTKLGMAGDVQKALEE-RNIFSVIYDGTQ----PNPTTENVAAG----LKLLKENNCDSVISLGG-GSP 100 (383)
T ss_pred CCEEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEeCCCC----CCcCHHHHHHH----HHHHHHcCCCEEEEeCC-chH
Confidence 378999986543334456778888864 577655433221 01111111000 000 1357999999999 999
Q ss_pred HHHHHhcC
Q 002584 769 LHASNLFR 776 (904)
Q Consensus 769 L~Aar~~~ 776 (904)
+-+++.+.
T Consensus 101 iD~AK~ia 108 (383)
T PRK09860 101 HDCAKGIA 108 (383)
T ss_pred HHHHHHHH
Confidence 99887653
No 143
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=65.39 E-value=17 Score=37.54 Aligned_cols=75 Identities=9% Similarity=0.167 Sum_probs=44.1
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCc---h
Q 002584 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG---V 767 (904)
Q Consensus 691 k~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDG---T 767 (904)
++|+||-.-+.-. ..++++|.+ .|.++.+-+... .+.+++ +.+|.||+.||-| .
T Consensus 2 ~~iliid~~dsf~----~~i~~~l~~-~g~~~~v~~~~~-----------------~~~~~l-~~~d~iIi~gGp~~~~~ 58 (190)
T PRK06895 2 TKLLIINNHDSFT----FNLVDLIRK-LGVPMQVVNVED-----------------LDLDEV-ENFSHILISPGPDVPRA 58 (190)
T ss_pred cEEEEEeCCCchH----HHHHHHHHH-cCCcEEEEECCc-----------------cChhHh-ccCCEEEECCCCCChHH
Confidence 4788887777533 236777754 466555422100 001112 3579999999998 2
Q ss_pred ---HHHHHHhcCCCCCcEEEEeCCC
Q 002584 768 ---ILHASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 768 ---lL~Aar~~~~~~~PVLGIN~Gs 789 (904)
++...+.+ ..++|||||-+|.
T Consensus 59 ~~~~~~~i~~~-~~~~PiLGIClG~ 82 (190)
T PRK06895 59 YPQLFAMLERY-HQHKSILGVCLGH 82 (190)
T ss_pred hhHHHHHHHHh-cCCCCEEEEcHHH
Confidence 22333332 3578999999985
No 144
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=64.69 E-value=14 Score=34.50 Aligned_cols=80 Identities=10% Similarity=0.048 Sum_probs=43.4
Q ss_pred CCCCHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHH-HHHHHHhcCCCCc
Q 002584 273 GQVTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVE-KFASLVSNSSKKP 349 (904)
Q Consensus 273 GqpT~eDLa~L~elG--IKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~-afleil~ds~~~P 349 (904)
..++++++..+.+.+ =-.|||.|+.. + |. .-..+| .+++|... +. .....+ ..+.|
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~-e---~~-----~ghIpg--A~~ip~~~--------l~~~~~~~i--~~~~~ 66 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAE-A---YA-----RGHVPG--AINLPHRE--------ICENATAKL--DKEKL 66 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHH-H---Hh-----cCCCCC--CEeCCHHH--------hhhHhhhcC--CCCCe
Confidence 367888887766554 23799999874 1 11 011122 23444331 11 111222 35689
Q ss_pred EEEeCcCCCC-hHHHHHHHHHHHcCC
Q 002584 350 LYLHSKEGVW-RTYAMVSRWRQYMAR 374 (904)
Q Consensus 350 VLVHCtAGKD-RTGaLvaLlr~~lGV 374 (904)
|+|+|..|.. |+..++..++ .+|.
T Consensus 67 vvvyc~~g~~~~s~~~a~~l~-~~G~ 91 (110)
T cd01521 67 FVVYCDGPGCNGATKAALKLA-ELGF 91 (110)
T ss_pred EEEEECCCCCchHHHHHHHHH-HcCC
Confidence 9999998863 5444444443 3565
No 145
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=63.77 E-value=5 Score=45.57 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=38.9
Q ss_pred CCCcEEEEEcCCchHHHHHHhcC-----CCCCcEEEEeC-------C---CCcccCCCCcccHHHHHHHHHc
Q 002584 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVIY 810 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN~-------G---sLGFLt~~~~ed~~~~L~~il~ 810 (904)
.++|.+|++|||||+-.|..+.. ..++||+||-. | ++||-|..+ .+.++++++..
T Consensus 91 ~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~--~~~~~i~~l~~ 160 (338)
T cd00363 91 HGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALK--TIVEAIDRIRD 160 (338)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHH--HHHHHHHHHHH
Confidence 47899999999999988877543 24799999954 2 677777543 33455555544
No 146
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=63.74 E-value=7 Score=50.16 Aligned_cols=94 Identities=20% Similarity=0.193 Sum_probs=54.7
Q ss_pred HHhhcCCCcccee----eeeccCCCCCCCcccceeehhhh--HHHhhh---cCCccccc----ccccccccccc------
Q 002584 112 MDTLCNPLTGECT----VSYEFTPEEKPLLEDKIVSVLGC--MLSLLN---KGREDVLS----GRSSIMNAYRV------ 172 (904)
Q Consensus 112 ~~~~~~~~~~ec~----v~~~~~~~~~~~led~ii~~~~~--~~~~ln---~gr~~v~s----~~~~~~~nf~~------ 172 (904)
..+||=+-+|+|+ --|-|+.|...|-.....+.|.. -+..+| +|+.=|-+ ||. +-|.+
T Consensus 679 iRtf~l~~~g~~~~R~v~qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRT---G~fi~iDaml~ 755 (1087)
T KOG4228|consen 679 IRTFALKKQGENPKREVRQFHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRT---GCFIVIDAMLD 755 (1087)
T ss_pred EEeeeccccCCCCCceeeeeeeccCCCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCc---ceEEEeHHHHH
Confidence 3578888899998 44889999998888888888877 344444 46652221 111 22332
Q ss_pred ---ccc-ccccccCCCchhhhhhhhhhhhH---HHHHHHhccC
Q 002584 173 ---ADI-SMTEDQLPPLAIFRSEMKRCCES---MHIALENYLT 208 (904)
Q Consensus 173 ---~~~-~~~~~~~p~l~l~r~~l~~~~~~---l~~~l~~yl~ 208 (904)
+|. -+.-+..+.|.--|-.|+.+=+. +|.+|..+..
T Consensus 756 ~~~~e~~vdiy~~v~~lR~QR~~mVQt~eQYiFi~~AllE~~~ 798 (1087)
T KOG4228|consen 756 RLECEGKVDIYGHVKTLRRQRNNMVQTEEQYIFIHEALLEACL 798 (1087)
T ss_pred HHHhhCccceechhHHHHhccccccccHHHHHHHHHHHHHHHh
Confidence 111 11124444666666667666554 4566555543
No 147
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=62.06 E-value=14 Score=41.83 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=43.0
Q ss_pred CEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-ccCCCcEEEEEcCCchH
Q 002584 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (904)
Q Consensus 691 k~VlIv~K~~~-~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d-~~~~~DlVIvLGGDGTl 768 (904)
++++||.-+.. .......++.+.|.+ .++++.+-.++. ..|....+... .+. ...++|+||.||| |.+
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIavGG-GSv 95 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEE-LGIEYEIFDEVE----ENPSLETIMEA----VEIAKKFNADFVIGIGG-GSP 95 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHH-cCCeEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 78999987664 333445667777754 466655433221 01111101000 000 1346899999999 999
Q ss_pred HHHHHhc
Q 002584 769 LHASNLF 775 (904)
Q Consensus 769 L~Aar~~ 775 (904)
+-+++..
T Consensus 96 iD~aK~i 102 (357)
T cd08181 96 LDAAKAI 102 (357)
T ss_pred HHHHHHH
Confidence 9999853
No 148
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=61.72 E-value=16 Score=41.10 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=49.9
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHHH
Q 002584 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (904)
Q Consensus 691 k~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL~ 770 (904)
++++||..+...... ..++.+.|.+ .++++.+...... ...|....+... .+.+.+++|+||.||| |.++-
T Consensus 24 ~~~livtd~~~~~~~-~~~v~~~l~~-~~i~~~~~~~~~~--~~~pt~~~v~~~----~~~~~~~~d~IIaIGG-Gs~~D 94 (348)
T cd08175 24 KKALIVADENTYAAA-GKKVEALLKR-AGVVVLLIVLPAG--DLIADEKAVGRV----LKELERDTDLIIAVGS-GTIND 94 (348)
T ss_pred CcEEEEECCcHHHHH-HHHHHHHHHH-CCCeeEEeecCCC--cccCCHHHHHHH----HHHhhccCCEEEEECC-cHHHH
Confidence 678999865532222 4678888864 4665432111100 001111111110 0111127899999999 99999
Q ss_pred HHHhcCC-CCCcEEEEeC
Q 002584 771 ASNLFRG-AVPPVISFNL 787 (904)
Q Consensus 771 Aar~~~~-~~~PVLGIN~ 787 (904)
+++.... ..+|++.|-+
T Consensus 95 ~aK~vA~~~~~p~i~IPT 112 (348)
T cd08175 95 ITKYVSYKTGIPYISVPT 112 (348)
T ss_pred HHHHHHHhcCCCEEEecC
Confidence 9987643 4689999875
No 149
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=61.26 E-value=13 Score=45.12 Aligned_cols=29 Identities=21% Similarity=0.215 Sum_probs=24.1
Q ss_pred CCCCcEEEeCcCCCChHHHHHHHHHHHcC
Q 002584 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMA 373 (904)
Q Consensus 345 s~~~PVLVHCtAGKDRTGaLvaLlr~~lG 373 (904)
..+.+|||||.-|.|||..++.|...++.
T Consensus 342 ~~~~sVlvhcsdGwDrT~qV~SLaQllLD 370 (573)
T KOG1089|consen 342 SEGASVLVHCSDGWDRTCQVSSLAQLLLD 370 (573)
T ss_pred hCCCeEEEEccCCcchhHHHHHHHHHHhC
Confidence 45679999999999999999888866443
No 150
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=61.09 E-value=18 Score=41.32 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=44.4
Q ss_pred CEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHH
Q 002584 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (904)
Q Consensus 691 k~VlIv~K~~~-~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL 769 (904)
++++||.-... .......++.+.|.+ .++++.+-..+. ..|....+.... ..-...++|+||.||| |..+
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~-~~~~~~~~~~v~----~~p~~~~v~~~~---~~~~~~~~D~IiavGG-GS~i 96 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQ-AGVEVVVFDKVE----PNPTTTTVMEGA---ALAREEGCDFVVGLGG-GSSM 96 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHH-cCCeEEEeCCcc----CCCCHHHHHHHH---HHHHHcCCCEEEEeCC-ccHH
Confidence 78999997664 344567788888864 577665432221 111111110000 0001247899999999 9999
Q ss_pred HHHHhc
Q 002584 770 HASNLF 775 (904)
Q Consensus 770 ~Aar~~ 775 (904)
-+++.+
T Consensus 97 D~aK~i 102 (380)
T cd08185 97 DTAKAI 102 (380)
T ss_pred HHHHHH
Confidence 888754
No 151
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=60.30 E-value=13 Score=41.71 Aligned_cols=91 Identities=21% Similarity=0.215 Sum_probs=48.8
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEE--EcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCch
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNIL--VEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 767 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~--ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGT 767 (904)
.++++||.-..-... ...++.+.|.+ .++++. +-+... ..|....+......-.+.-..+.|+||.+|| |+
T Consensus 20 ~~~~livtd~~~~~~-~~~~v~~~L~~-~g~~~~~~~~~~~e----~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gs 92 (344)
T TIGR01357 20 PSKLVIITDETVADL-YADKLLEALQA-LGYNVLKLTVPDGE----ESKSLETVQRLYDQLLEAGLDRSSTIIALGG-GV 92 (344)
T ss_pred CCeEEEEECCchHHH-HHHHHHHHHHh-cCCceeEEEeCCCC----CCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-hH
Confidence 378999986543222 46677788854 455432 111110 0011000100000000001134699999999 99
Q ss_pred HHHHHHhcC---CCCCcEEEEeC
Q 002584 768 ILHASNLFR---GAVPPVISFNL 787 (904)
Q Consensus 768 lL~Aar~~~---~~~~PVLGIN~ 787 (904)
++-++..+. ...+|++.|.+
T Consensus 93 v~D~aK~iA~~~~~~~p~i~VPT 115 (344)
T TIGR01357 93 VGDLAGFVAATYMRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHHHHHccCCCEEEecC
Confidence 999888764 45789988876
No 152
>PRK05670 anthranilate synthase component II; Provisional
Probab=59.79 E-value=11 Score=38.79 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHH------HHHHhcCCCC
Q 002584 706 EAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL------HASNLFRGAV 779 (904)
Q Consensus 706 ~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL------~Aar~~~~~~ 779 (904)
....+++||.+ .|+++.+-+...... .+.+. -++|.||..||-|+.- ...+.+ ...
T Consensus 11 f~~~i~~~l~~-~g~~~~v~~~~~~~~--------------~~~~~--~~~dglIlsgGpg~~~d~~~~~~~l~~~-~~~ 72 (189)
T PRK05670 11 FTYNLVQYLGE-LGAEVVVYRNDEITL--------------EEIEA--LNPDAIVLSPGPGTPAEAGISLELIREF-AGK 72 (189)
T ss_pred hHHHHHHHHHH-CCCcEEEEECCCCCH--------------HHHHh--CCCCEEEEcCCCCChHHcchHHHHHHHh-cCC
Confidence 35678888865 577766544311000 00111 2379999999998862 222333 246
Q ss_pred CcEEEEeCCC
Q 002584 780 PPVISFNLGS 789 (904)
Q Consensus 780 ~PVLGIN~Gs 789 (904)
+|||||-+|+
T Consensus 73 ~PvLGIClG~ 82 (189)
T PRK05670 73 VPILGVCLGH 82 (189)
T ss_pred CCEEEECHHH
Confidence 8999999885
No 153
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=59.74 E-value=8.2 Score=46.61 Aligned_cols=34 Identities=26% Similarity=0.296 Sum_probs=27.8
Q ss_pred CCCcEEEEEcCCchHHHHHHhcC-----CCCCcEEEEeC
Q 002584 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL 787 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN~ 787 (904)
-++|.+|++|||||+-.|..+.. +..++|+||--
T Consensus 160 ~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPk 198 (539)
T TIGR02477 160 LKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPK 198 (539)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEee
Confidence 47899999999999988877653 45699999953
No 154
>PRK07411 hypothetical protein; Validated
Probab=59.65 E-value=18 Score=41.77 Aligned_cols=84 Identities=23% Similarity=0.266 Sum_probs=47.7
Q ss_pred CCCHhhHHHHHHcCC--cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEE
Q 002584 274 QVTEEGLKWLMEKGY--KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLY 351 (904)
Q Consensus 274 qpT~eDLa~L~elGI--KTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~~PVL 351 (904)
.++.+++..+.+.+- -.|||.|+.. + +. .-...| -+++|+.+.... .....+.++ ..++|++
T Consensus 283 ~Is~~el~~~l~~~~~~~vlIDVR~~~-E---~~-----~ghIpG--AiniP~~~l~~~--~~~~~l~~l---~~d~~IV 346 (390)
T PRK07411 283 EMTVTELKALLDSGADDFVLIDVRNPN-E---YE-----IARIPG--SVLVPLPDIENG--PGVEKVKEL---LNGHRLI 346 (390)
T ss_pred ccCHHHHHHHHhCCCCCeEEEECCCHH-H---hc-----cCcCCC--CEEccHHHhhcc--cchHHHhhc---CCCCeEE
Confidence 578888877665552 3699999975 1 11 011223 345676422111 011223332 2467999
Q ss_pred EeCcCCCChHHHHHHHHHHHcCCC
Q 002584 352 LHSKEGVWRTYAMVSRWRQYMARC 375 (904)
Q Consensus 352 VHCtAGKDRTGaLvaLlr~~lGV~ 375 (904)
+||..|. |+...+..++. +|..
T Consensus 347 vyC~~G~-RS~~aa~~L~~-~G~~ 368 (390)
T PRK07411 347 AHCKMGG-RSAKALGILKE-AGIE 368 (390)
T ss_pred EECCCCH-HHHHHHHHHHH-cCCC
Confidence 9999998 99876655543 5753
No 155
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=59.63 E-value=29 Score=41.25 Aligned_cols=76 Identities=8% Similarity=0.191 Sum_probs=47.0
Q ss_pred cCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCH------HHHHHHHHH-HhcCCCCcEEEeCcCCC
Q 002584 286 KGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTM------EQVEKFASL-VSNSSKKPLYLHSKEGV 358 (904)
Q Consensus 286 lGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~------e~I~aflei-l~ds~~~PVLVHCtAGK 358 (904)
..+..||++........ .......++|+|+......+. ..+..|+.. +.....+++||+|..||
T Consensus 317 ~~~~~vI~~s~~~~~~~---------~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGk 387 (451)
T PF04179_consen 317 SEFDCVINCSESPTPKE---------SWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGK 387 (451)
T ss_pred CCcCEEEEcCCCccccc---------ccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcc
Confidence 47889999976641111 123567899999986554443 223334433 22224789999999999
Q ss_pred ChHH-HHHHHHHH
Q 002584 359 WRTY-AMVSRWRQ 370 (904)
Q Consensus 359 DRTG-aLvaLlr~ 370 (904)
|..- ++.+++-.
T Consensus 388 DlSVgVaLaILc~ 400 (451)
T PF04179_consen 388 DLSVGVALAILCK 400 (451)
T ss_pred hHHHHHHHHHHHH
Confidence 9976 33444433
No 156
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=59.47 E-value=14 Score=41.05 Aligned_cols=86 Identities=22% Similarity=0.240 Sum_probs=48.4
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccc-cCCCcEEEEEcCCchH
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~-~~~~DlVIvLGGDGTl 768 (904)
.++++||.-..-.- ....++.+.|.+. +++.+...+. ..|.+..+... .+.+ ..++|+||.+|| |++
T Consensus 23 ~~~~liv~~~~~~~-~~~~~v~~~l~~~--~~~~~~~~~~----~~p~~~~v~~~----~~~~~~~~~d~IIaiGG-Gs~ 90 (332)
T cd07766 23 FDRALVVSDEGVVK-GVGEKVADSLKKL--IAVHIFDGVG----PNPTFEEVKEA----VERARAAEVDAVIAVGG-GST 90 (332)
T ss_pred CCeEEEEeCCchhh-hHHHHHHHHHHhc--CcEEEeCCcC----CCcCHHHHHHH----HHHHHhcCcCEEEEeCC-chH
Confidence 47899998554322 4456677777532 3333221111 01111111110 0111 246899999999 999
Q ss_pred HHHHHhcCC---CCCcEEEEeC
Q 002584 769 LHASNLFRG---AVPPVISFNL 787 (904)
Q Consensus 769 L~Aar~~~~---~~~PVLGIN~ 787 (904)
+-+++.... ..+|++.|-+
T Consensus 91 ~D~aK~ia~~~~~~~p~i~iPT 112 (332)
T cd07766 91 LDTAKAVAALLNRGLPIIIVPT 112 (332)
T ss_pred HHHHHHHHHHhcCCCCEEEEeC
Confidence 999887532 3789999875
No 157
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=58.80 E-value=35 Score=38.29 Aligned_cols=91 Identities=13% Similarity=0.054 Sum_probs=50.3
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcc--cCcchhhhhHHhhhcCC-c-EEEEEecCC-----CCCCCHHHHHHHHHHHhcC
Q 002584 275 VTEEGLKWLMEKGYKTIVDIRAERV--KDNFYEAAIDDAILSGK-V-ELIKIPVEV-----RTAPTMEQVEKFASLVSNS 345 (904)
Q Consensus 275 pT~eDLa~L~elGIKTVIDLRsee~--e~~~~~a~e~~~~e~~G-I-~yIhIPV~d-----~~~Ps~e~I~afleil~ds 345 (904)
.+.+.++...+.+-+.|||-|+.+. .....+. ... .| | --+++|..+ ..-.+.+.++.|.+..--.
T Consensus 158 ~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~----~~~-~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~ 232 (285)
T COG2897 158 VDATLVADALEVPAVLLIDARSPERFRGKEPEPR----DGK-AGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGID 232 (285)
T ss_pred CCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCC----CCC-CCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCC
Confidence 3556677777776677999999861 1111110 000 11 1 122333211 1123456666666542225
Q ss_pred CCCcEEEeCcCCCChHHHHHHHHHHH
Q 002584 346 SKKPLYLHSKEGVWRTYAMVSRWRQY 371 (904)
Q Consensus 346 ~~~PVLVHCtAGKDRTGaLvaLlr~~ 371 (904)
..++++++|..|. |+...+..+..+
T Consensus 233 ~~~~vI~yCgsG~-~As~~~~al~~l 257 (285)
T COG2897 233 PDKEVIVYCGSGV-RASVTWLALAEL 257 (285)
T ss_pred CCCCEEEEcCCch-HHHHHHHHHHHh
Confidence 6789999999999 888666555443
No 158
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=58.64 E-value=20 Score=41.09 Aligned_cols=76 Identities=14% Similarity=0.109 Sum_probs=44.5
Q ss_pred CCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-ccCCCcEEEEEcCCch
Q 002584 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGV 767 (904)
Q Consensus 690 pk~VlIv~K~~~-~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d-~~~~~DlVIvLGGDGT 767 (904)
.++++||..... .......++.+.|.+ .++++.+..++. ..|....+... .+. ...++|+||.+|| |+
T Consensus 26 ~kr~livtd~~~~~~~g~~~~v~~~L~~-~gi~~~~f~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS 95 (383)
T cd08186 26 ISKVLLVTGKSAYKKSGAWDKVEPALDE-HGIEYVLYNKVT----PNPTVDQVDEA----AKLGREFGAQAVIAIGG-GS 95 (383)
T ss_pred CCEEEEEcCccHHhhcChHHHHHHHHHH-cCCeEEEeCCCC----CCCCHHHHHHH----HHHHHHcCCCEEEEeCC-cc
Confidence 378999987653 334456778888864 577665543321 11211111100 011 1246899999999 99
Q ss_pred HHHHHHhc
Q 002584 768 ILHASNLF 775 (904)
Q Consensus 768 lL~Aar~~ 775 (904)
++-+++.+
T Consensus 96 ~iD~aK~i 103 (383)
T cd08186 96 PIDSAKSA 103 (383)
T ss_pred HHHHHHHH
Confidence 99888765
No 159
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=58.50 E-value=39 Score=31.57 Aligned_cols=75 Identities=20% Similarity=0.165 Sum_probs=39.0
Q ss_pred CCHhhHHHHHHcC------CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCC
Q 002584 275 VTEEGLKWLMEKG------YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKK 348 (904)
Q Consensus 275 pT~eDLa~L~elG------IKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~~ 348 (904)
++++++..+.+.+ =-.|||.|+.+ +. . ....| -+++|+.... +.+......+......
T Consensus 4 is~~el~~~l~~~~~~~~~~~~iiDvR~~e-----f~--~---ghipg--Ai~ip~~~~~----~~~~~~~~~~~~~~~~ 67 (113)
T cd01443 4 ISPEELVALLENSDSNAGKDFVVVDLRRDD-----YE--G---GHIKG--SINLPAQSCY----QTLPQVYALFSLAGVK 67 (113)
T ss_pred cCHHHHHHHHhCCccccCCcEEEEECCchh-----cC--C---CcccC--ceecchhHHH----HHHHHHHHHhhhcCCC
Confidence 5677777776665 23699999752 11 0 01122 3667765211 1111222212123456
Q ss_pred cEEEeCcCCCChHHHHH
Q 002584 349 PLYLHSKEGVWRTYAMV 365 (904)
Q Consensus 349 PVLVHCtAGKDRTGaLv 365 (904)
++++||..|-.|+-.++
T Consensus 68 ~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 68 LAIFYCGSSQGRGPRAA 84 (113)
T ss_pred EEEEECCCCCcccHHHH
Confidence 89999997533765444
No 160
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=58.39 E-value=9 Score=46.47 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=27.6
Q ss_pred CCCcEEEEEcCCchHHHHHHhcC-----CCCCcEEEEe
Q 002584 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFN 786 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN 786 (904)
-++|.+|++|||||+-.|..+.. +..+||+||-
T Consensus 163 ~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIP 200 (555)
T PRK07085 163 LKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVP 200 (555)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEe
Confidence 37999999999999998887653 3589999994
No 161
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=58.39 E-value=17 Score=41.53 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=43.4
Q ss_pred CEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-ccCCCcEEEEEcCCchH
Q 002584 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (904)
Q Consensus 691 k~VlIv~K~~~-~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d-~~~~~DlVIvLGGDGTl 768 (904)
++++||.-.+. .......++.+.|.+ .++++.+-.++.. .|....+... ... ...++|+||.+|| |..
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIavGG-GSv 93 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKE-AGIEVEVFEGVEP----DPSVETVLKG----AEAMREFEPDWIIALGG-GSP 93 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHH-cCCeEEEeCCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-ccH
Confidence 68898875543 334556778888854 5776654333211 1111111000 000 1347899999999 999
Q ss_pred HHHHHhc
Q 002584 769 LHASNLF 775 (904)
Q Consensus 769 L~Aar~~ 775 (904)
+-+++.+
T Consensus 94 iD~AK~i 100 (375)
T cd08179 94 IDAAKAM 100 (375)
T ss_pred HHHHHHH
Confidence 9988765
No 162
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=58.17 E-value=9 Score=46.56 Aligned_cols=34 Identities=24% Similarity=0.191 Sum_probs=27.6
Q ss_pred CCCcEEEEEcCCchHHHHHHhcC-----CCCCcEEEEeC
Q 002584 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL 787 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN~ 787 (904)
-++|.+|++|||||+-.|+.+.. +..++|+||--
T Consensus 189 l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPK 227 (568)
T PLN02251 189 LDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPK 227 (568)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCc
Confidence 36899999999999999887643 45589999853
No 163
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=58.10 E-value=12 Score=42.97 Aligned_cols=76 Identities=17% Similarity=0.171 Sum_probs=42.5
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHHH
Q 002584 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (904)
Q Consensus 691 k~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL~ 770 (904)
++++||....-.......++.+.|.+ .|+++.+-.++. ..|....+..... .-...++|+||.||| |..+-
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~-~gi~~~~f~~v~----~~p~~~~v~~~~~---~~~~~~~D~IIaiGG-GS~iD 92 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKR-RGVETEVFSDVE----PDPSLETVRKGLE---LMNSFKPDTIIALGG-GSPMD 92 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHH-CCCeEEEecCCC----CCcCHHHHHHHHH---HHHhcCCCEEEEeCC-ccHHH
Confidence 78999985432222356678888864 577765433321 1111111110000 001347899999999 88888
Q ss_pred HHHhc
Q 002584 771 ASNLF 775 (904)
Q Consensus 771 Aar~~ 775 (904)
+++.+
T Consensus 93 ~AK~i 97 (398)
T cd08178 93 AAKIM 97 (398)
T ss_pred HHHHH
Confidence 87764
No 164
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=57.80 E-value=23 Score=40.26 Aligned_cols=91 Identities=18% Similarity=0.135 Sum_probs=49.9
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEE--EcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCch
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNIL--VEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 767 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~--ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGT 767 (904)
.++++||.-..-.. ....++.+.|.+ .++++. +-++.. ..|....+......-.+.-..+.|+||.+|| |+
T Consensus 31 ~~~~livtd~~~~~-~~~~~v~~~L~~-~gi~~~~~~~~~~e----~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gs 103 (358)
T PRK00002 31 GKKVAIVTDETVAP-LYLEKLRASLEA-AGFEVDVVVLPDGE----QYKSLETLEKIYDALLEAGLDRSDTLIALGG-GV 103 (358)
T ss_pred CCeEEEEECCchHH-HHHHHHHHHHHh-cCCceEEEEeCCCC----CCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-cH
Confidence 47899998655422 356677777754 455443 212110 0011100000000000001135699999999 99
Q ss_pred HHHHHHhcC---CCCCcEEEEeC
Q 002584 768 ILHASNLFR---GAVPPVISFNL 787 (904)
Q Consensus 768 lL~Aar~~~---~~~~PVLGIN~ 787 (904)
++-++.... ..++|++.|.+
T Consensus 104 v~D~aK~iA~~~~~gip~i~IPT 126 (358)
T PRK00002 104 IGDLAGFAAATYMRGIRFIQVPT 126 (358)
T ss_pred HHHHHHHHHHHhcCCCCEEEcCc
Confidence 999998764 55789988876
No 165
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=57.34 E-value=14 Score=41.79 Aligned_cols=76 Identities=21% Similarity=0.315 Sum_probs=42.9
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-ccCCCcEEEEEcCCchH
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d-~~~~~DlVIvLGGDGTl 768 (904)
.++++||.-..........++.+.|.+ .++++.+-..+. ..|....+... ... ...++|+||.+|| |++
T Consensus 23 ~~~~lvv~~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~~~----~~p~~~~v~~~----~~~~~~~~~d~IiaiGG-Gs~ 92 (370)
T cd08551 23 GRKALIVTDPGLVKTGVLDKVIDSLKE-AGIEVVIFDGVE----PNPTLSNVDAA----VAAYREEGCDGVIAVGG-GSV 92 (370)
T ss_pred CCeEEEEeCcchhhCccHHHHHHHHHH-cCCeEEEECCCC----CCCCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 478999986553223455677778754 466655332221 01111111100 001 1246899999999 999
Q ss_pred HHHHHhc
Q 002584 769 LHASNLF 775 (904)
Q Consensus 769 L~Aar~~ 775 (904)
+-+++.+
T Consensus 93 ~D~AK~v 99 (370)
T cd08551 93 LDTAKAI 99 (370)
T ss_pred HHHHHHH
Confidence 9988865
No 166
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=57.13 E-value=16 Score=41.68 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=42.7
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-ccCCCcEEEEEcCCchH
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d-~~~~~DlVIvLGGDGTl 768 (904)
.++++||....-.......++.+.|.+ .++++.+-.++. ..|....+... .+. ...++|+||.+|| |.+
T Consensus 29 ~~r~lvvt~~~~~~~g~~~~v~~~L~~-~~i~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IiaiGG-GSv 98 (379)
T TIGR02638 29 FKKALVVTDKDLIKFGVADKVTDLLDE-AGIAYELFDEVK----PNPTITVVKAG----VAAFKASGADYLIAIGG-GSP 98 (379)
T ss_pred CCEEEEEcCcchhhccchHHHHHHHHH-CCCeEEEECCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-hHH
Confidence 378999987653222346677788754 577665433321 11111111000 000 1347899999999 999
Q ss_pred HHHHHh
Q 002584 769 LHASNL 774 (904)
Q Consensus 769 L~Aar~ 774 (904)
+-+++.
T Consensus 99 iD~aKa 104 (379)
T TIGR02638 99 IDTAKA 104 (379)
T ss_pred HHHHHH
Confidence 988864
No 167
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=56.71 E-value=46 Score=28.78 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=19.2
Q ss_pred CCCCcEEEeCcCCCChHHHHHHHHHHHcCCC
Q 002584 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (904)
Q Consensus 345 s~~~PVLVHCtAGKDRTGaLvaLlr~~lGV~ 375 (904)
..+.+++|+|..|. |+-.++..++. +|..
T Consensus 54 ~~~~~iv~~c~~g~-~a~~~~~~l~~-~G~~ 82 (100)
T smart00450 54 DKDKPVVVYCRSGN-RSAKAAWLLRE-LGFK 82 (100)
T ss_pred CCCCeEEEEeCCCc-HHHHHHHHHHH-cCCC
Confidence 45689999998777 77555444433 4544
No 168
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=56.57 E-value=9.9 Score=46.57 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=27.1
Q ss_pred CCCcEEEEEcCCchHHHHHHhcC-----CCCCcEEEEe
Q 002584 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFN 786 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN 786 (904)
-++|.+|++|||||+-.|+.+.. +.+++|+||-
T Consensus 172 l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIP 209 (610)
T PLN03028 172 LKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVP 209 (610)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEec
Confidence 36899999999999988877643 3479999984
No 169
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=56.57 E-value=18 Score=41.35 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=42.1
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-ccCCCcEEEEEcCCchHH
Q 002584 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVIL 769 (904)
Q Consensus 691 k~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d-~~~~~DlVIvLGGDGTlL 769 (904)
++++||.-..-.......++.+.|.+ .++++.+..++. ..|....+... .+. ...++|+||.||| |..+
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS~i 100 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDA-AGLAYEIYDGVK----PNPTIEVVKEG----VEVFKASGADYLIAIGG-GSPQ 100 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHH-CCCeEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-hHHH
Confidence 68999987543223356677888854 466655433221 11111111000 001 1347899999999 9999
Q ss_pred HHHHh
Q 002584 770 HASNL 774 (904)
Q Consensus 770 ~Aar~ 774 (904)
-+++.
T Consensus 101 D~aK~ 105 (382)
T PRK10624 101 DTCKA 105 (382)
T ss_pred HHHHH
Confidence 98874
No 170
>PLN02834 3-dehydroquinate synthase
Probab=56.38 E-value=17 Score=42.84 Aligned_cols=92 Identities=17% Similarity=0.150 Sum_probs=48.1
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEE----cCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCC
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILV----EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~v----e~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGD 765 (904)
.++++||....-... ...++.+.|.+ .|+++.+ -++... .+....+...+..-.+.-.++.|+||.+||
T Consensus 100 g~rvlIVtD~~v~~~-~~~~v~~~L~~-~g~~~~v~~~v~~~gE~----~ksl~~v~~~~~~l~~~~~dr~~~VIAiGG- 172 (433)
T PLN02834 100 GKRVLVVTNETVAPL-YLEKVVEALTA-KGPELTVESVILPDGEK----YKDMETLMKVFDKALESRLDRRCTFVALGG- 172 (433)
T ss_pred CCEEEEEECccHHHH-HHHHHHHHHHh-cCCceEEEEEEecCCcC----CCCHHHHHHHHHHHHhcCCCcCcEEEEECC-
Confidence 478999986653323 56778888854 4554322 121100 011100000000000001123459999999
Q ss_pred chHHHHHHhc---CCCCCcEEEEeCC
Q 002584 766 GVILHASNLF---RGAVPPVISFNLG 788 (904)
Q Consensus 766 GTlL~Aar~~---~~~~~PVLGIN~G 788 (904)
|+++-++... ...++|++-|.+.
T Consensus 173 Gsv~D~ak~~A~~y~rgiplI~VPTT 198 (433)
T PLN02834 173 GVIGDMCGFAAASYQRGVNFVQIPTT 198 (433)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 9999988754 2457888877763
No 171
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=56.30 E-value=25 Score=39.57 Aligned_cols=86 Identities=13% Similarity=0.083 Sum_probs=51.2
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-ccCCCcEEEEEcCCchH
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d-~~~~~DlVIvLGGDGTl 768 (904)
.++++||....... ....++.+.|.+ .++++.+. .+. ..|....+... .+. ...++|+||.+|| |..
T Consensus 22 ~~r~livt~~~~~~-~~~~~v~~~L~~-~~i~~~~~-~~~----~~p~~~~v~~~----~~~~~~~~~D~IIavGG-GS~ 89 (351)
T cd08170 22 GKRALIIADEFVLD-LVGAKIEESLAA-AGIDARFE-VFG----GECTRAEIERL----AEIARDNGADVVIGIGG-GKT 89 (351)
T ss_pred CCeEEEEECHHHHH-HHHHHHHHHHHh-CCCeEEEE-EeC----CcCCHHHHHHH----HHHHhhcCCCEEEEecC-chh
Confidence 37899998544322 456778888854 46665322 110 11111111000 001 1247899999999 999
Q ss_pred HHHHHhcCC-CCCcEEEEeC
Q 002584 769 LHASNLFRG-AVPPVISFNL 787 (904)
Q Consensus 769 L~Aar~~~~-~~~PVLGIN~ 787 (904)
+-+++.+.. ..+|++.|-+
T Consensus 90 iD~aK~ia~~~~~P~iaIPT 109 (351)
T cd08170 90 LDTAKAVADYLGAPVVIVPT 109 (351)
T ss_pred hHHHHHHHHHcCCCEEEeCC
Confidence 999987643 4689999975
No 172
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=56.30 E-value=12 Score=42.36 Aligned_cols=76 Identities=20% Similarity=0.210 Sum_probs=43.8
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-ccCCCcEEEEEcCCchH
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d-~~~~~DlVIvLGGDGTl 768 (904)
.++++||.-..-.....+.++.+.|.+ .|+++.+-..+. ..|....+... ... -..++|+||.||| |++
T Consensus 24 ~~~~liv~~~~~~~~~~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~d~IIaiGG-GSv 93 (370)
T cd08192 24 IKRPLIVTDPGLAALGLVARVLALLED-AGLAAALFDEVP----PNPTEAAVEAG----LAAYRAGGCDGVIAFGG-GSA 93 (370)
T ss_pred CCeEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEeCCCC----CCCCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 378999987654333456778888864 567665432221 11111111000 001 1357899999999 999
Q ss_pred HHHHHhc
Q 002584 769 LHASNLF 775 (904)
Q Consensus 769 L~Aar~~ 775 (904)
+-+++..
T Consensus 94 iD~aK~i 100 (370)
T cd08192 94 LDLAKAV 100 (370)
T ss_pred HHHHHHH
Confidence 9888764
No 173
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=56.24 E-value=19 Score=41.16 Aligned_cols=89 Identities=19% Similarity=0.231 Sum_probs=51.3
Q ss_pred CCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchH
Q 002584 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (904)
Q Consensus 690 pk~VlIv~K~~~-~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTl 768 (904)
.++++||.-+.. .......++.+.|.+ .|+++.+-.++. ..|....+.... ..-...++|+||.+|| |+.
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~~---~~~~~~~~D~IIaiGG-GS~ 98 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKE-AGIEVVELGGVE----PNPRLETVREGI---ELCKEEKVDFILAVGG-GSV 98 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHH-cCCeEEEECCcc----CCCCHHHHHHHH---HHHHHcCCCEEEEeCC-hHH
Confidence 378999976543 233445677777754 567765433221 011111110000 0001347899999999 999
Q ss_pred HHHHHhcCC-------------------CCCcEEEEeC
Q 002584 769 LHASNLFRG-------------------AVPPVISFNL 787 (904)
Q Consensus 769 L~Aar~~~~-------------------~~~PVLGIN~ 787 (904)
+-+++.... ..+|++.|.+
T Consensus 99 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPT 136 (382)
T cd08187 99 IDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLT 136 (382)
T ss_pred HHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeC
Confidence 998886422 3579999986
No 174
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=55.67 E-value=23 Score=39.96 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=48.7
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCe--EEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCch
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKM--NILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 767 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi--~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGT 767 (904)
.++++||.-.+-.. ....++.+.|.. .++ .+++-+... ..|.+..+......-.+.-..+.|+||.+|| |+
T Consensus 24 ~~~~livtd~~~~~-~~~~~l~~~L~~-~g~~~~~~~~~~~e----~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gs 96 (345)
T cd08195 24 GSKILIVTDENVAP-LYLEKLKAALEA-AGFEVEVIVIPAGE----ASKSLETLEKLYDALLEAGLDRKSLIIALGG-GV 96 (345)
T ss_pred CCeEEEEECCchHH-HHHHHHHHHHHh-cCCceEEEEeCCCC----CcCCHHHHHHHHHHHHHcCCCCCCeEEEECC-hH
Confidence 47899998655322 345677788754 343 333322111 0111111100000000011134599999999 99
Q ss_pred HHHHHHhcC---CCCCcEEEEeC
Q 002584 768 ILHASNLFR---GAVPPVISFNL 787 (904)
Q Consensus 768 lL~Aar~~~---~~~~PVLGIN~ 787 (904)
++-++.... ..++|++.|.+
T Consensus 97 v~D~ak~vA~~~~rgip~i~VPT 119 (345)
T cd08195 97 VGDLAGFVAATYMRGIDFIQIPT 119 (345)
T ss_pred HHhHHHHHHHHHhcCCCeEEcch
Confidence 999888764 45788888775
No 175
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=55.65 E-value=18 Score=34.85 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=32.7
Q ss_pred HHHHHHcCCcEEEEcCCCcc-cCcchh-hhhHHhhhcCCcEEEEEecCC
Q 002584 280 LKWLMEKGYKTIVDIRAERV-KDNFYE-AAIDDAILSGKVELIKIPVEV 326 (904)
Q Consensus 280 La~L~elGIKTVIDLRsee~-e~~~~~-a~e~~~~e~~GI~yIhIPV~d 326 (904)
+..|++.||+.|||.|.-.. ..+.+. ......+...||.|+|+|-..
T Consensus 6 ~~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~Lg 54 (122)
T PF04343_consen 6 YDLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPELG 54 (122)
T ss_pred HHHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhhc
Confidence 45788899999999888751 122221 234456777899999999753
No 176
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=55.58 E-value=9.5 Score=50.10 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=28.1
Q ss_pred CCCcEEEEEcCCchHHHHHHhcCC----------CCCcEEEEeC
Q 002584 754 ERVDFVACLGGDGVILHASNLFRG----------AVPPVISFNL 787 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~~----------~~~PVLGIN~ 787 (904)
-++|.+|+||||||+-.|+.+... .++||+||-.
T Consensus 799 ~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~~~~~gi~VIgVPk 842 (1328)
T PTZ00468 799 FNMRAIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVPV 842 (1328)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHhhhccccccCCCcEEEeCc
Confidence 478999999999999998886532 4799999954
No 177
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=55.53 E-value=27 Score=39.23 Aligned_cols=84 Identities=21% Similarity=0.312 Sum_probs=48.6
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHHH
Q 002584 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (904)
Q Consensus 691 k~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL~ 770 (904)
++++||.-..-.. ....++.+.|.+...+.+++.++- ....+...... -...++|+||.+|| |+++-
T Consensus 26 ~~~liv~d~~~~~-~~~~~v~~~l~~~~~~~~~~~~~~--------~~~~v~~~~~~---~~~~~~d~iIaiGG-Gs~~D 92 (339)
T cd08173 26 GRVLVVTGPTTKS-IAGKKVEALLEDEGEVDVVIVEDA--------TYEEVEKVESS---ARDIGADFVIGVGG-GRVID 92 (339)
T ss_pred CeEEEEECCchHH-HHHHHHHHHHHhcCCeEEEEeCCC--------CHHHHHHHHHH---hhhcCCCEEEEeCC-chHHH
Confidence 6788888655322 345677777754322333443321 00001000000 01236899999999 99999
Q ss_pred HHHhcC-CCCCcEEEEeC
Q 002584 771 ASNLFR-GAVPPVISFNL 787 (904)
Q Consensus 771 Aar~~~-~~~~PVLGIN~ 787 (904)
+++... ...+|++-|.+
T Consensus 93 ~aK~~a~~~~~p~i~iPT 110 (339)
T cd08173 93 VAKVAAYKLGIPFISVPT 110 (339)
T ss_pred HHHHHHHhcCCCEEEecC
Confidence 998764 34689998875
No 178
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=55.06 E-value=30 Score=38.81 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHhcCCCCcEEEeCcCCCChHHHHHHHHHHHcCC
Q 002584 330 PTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (904)
Q Consensus 330 Ps~e~I~afleil~ds~~~PVLVHCtAGKDRTGaLvaLlr~~lGV 374 (904)
.+.+++++++.-.--..+.||+++|..|. |+..++..+. .+|.
T Consensus 252 ~~~~el~~~~~~~gi~~~~~iv~yC~sG~-~A~~~~~~L~-~~G~ 294 (320)
T PLN02723 252 LPAEELKKRFEQEGISLDSPIVASCGTGV-TACILALGLH-RLGK 294 (320)
T ss_pred CCHHHHHHHHHhcCCCCCCCEEEECCcHH-HHHHHHHHHH-HcCC
Confidence 35566666554321135679999999987 7765555443 4674
No 179
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=54.98 E-value=24 Score=39.81 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=55.1
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHHH
Q 002584 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (904)
Q Consensus 691 k~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL~ 770 (904)
++++||.-.... .....++.+.|.+ .++.+.+-..+. ..|....+.... ..-...++|+||.+|| |+++-
T Consensus 23 ~r~liv~d~~~~-~~~~~~v~~~l~~-~~~~~~~~~~~~----~~p~~~~v~~~~---~~~~~~~~d~iiavGG-Gs~~D 92 (345)
T cd08171 23 KKVVVIGGKTAL-AAAKDKIKAALEQ-SGIEITDFIWYG----GESTYENVERLK---KNPAVQEADMIFAVGG-GKAID 92 (345)
T ss_pred CEEEEEeCHHHH-HHHHHHHHHHHHH-CCCeEEEEEecC----CCCCHHHHHHHH---HHHhhcCCCEEEEeCC-cHHHH
Confidence 789999765432 2335677777754 466654211110 011111110000 0011347899999999 99999
Q ss_pred HHHhcCC-CCCcEEEEeC--CCCcccCCC
Q 002584 771 ASNLFRG-AVPPVISFNL--GSLGFLTSH 796 (904)
Q Consensus 771 Aar~~~~-~~~PVLGIN~--GsLGFLt~~ 796 (904)
+++.+.. ..+|++.|.+ |+=+..+.+
T Consensus 93 ~aK~ia~~~~~p~i~VPTt~gtgse~t~~ 121 (345)
T cd08171 93 TVKVLADKLGKPVFTFPTIASNCAAVTAV 121 (345)
T ss_pred HHHHHHHHcCCCEEEecCccccCccccce
Confidence 9987643 4789999986 555555554
No 180
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=54.61 E-value=11 Score=45.64 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=27.4
Q ss_pred CCCcEEEEEcCCchHHHHHHhcC-----CCCCcEEEEeC
Q 002584 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL 787 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN~ 787 (904)
-++|.+|++|||||+-.|+.+.. +..++|+||--
T Consensus 165 ~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPK 203 (550)
T cd00765 165 LDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPK 203 (550)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEee
Confidence 36899999999999998877643 44589999953
No 181
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=54.59 E-value=21 Score=40.21 Aligned_cols=100 Identities=17% Similarity=0.094 Sum_probs=52.4
Q ss_pred hhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEe---cCCCCC-------------------------
Q 002584 278 EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIP---VEVRTA------------------------- 329 (904)
Q Consensus 278 eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIP---V~d~~~------------------------- 329 (904)
.+++.++++|.+||||..+.....+ +....+..+.-|++.|--= ......
T Consensus 42 ~El~~~k~~Gg~tiVd~T~~g~GRd--~~~l~~is~~tGv~II~~TG~y~~~~~p~~~~~~s~e~la~~~i~Ei~~Gidg 119 (308)
T PF02126_consen 42 AELKEFKAAGGRTIVDATPIGLGRD--VEALREISRRTGVNIIASTGFYKEPFYPEWVREASVEELADLFIREIEEGIDG 119 (308)
T ss_dssp HHHHHHHHTTEEEEEE--SGGGTB---HHHHHHHHHHHT-EEEEEEEE-SGGCSCHHHHTSHHHHHHHHHHHHHHT-STT
T ss_pred HHHHHHHHcCCCEEEecCCcccCcC--HHHHHHHHHHhCCeEEEeCCCCccccCChhhhcCCHHHHHHHHHHHHHhcCCC
Confidence 4678888999999999988752222 2234555666777766421 110000
Q ss_pred ----------------CCHHHHHHHHHH--HhcCCCCcEEEeCcCCCChHHHHHHHHHHHcCCCHHHHH
Q 002584 330 ----------------PTMEQVEKFASL--VSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQIS 380 (904)
Q Consensus 330 ----------------Ps~e~I~aflei--l~ds~~~PVLVHCtAGKDRTGaLvaLlr~~lGV~~edIi 380 (904)
.++..-+.|... ......-||.+||..|. |.|.=.+-++.-.|++++.++
T Consensus 120 T~ikaG~Ik~~~~~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~-~~~~e~~~il~e~Gv~~~rvv 187 (308)
T PF02126_consen 120 TGIKAGIIKEIGSSNPITPLEEKVLRAAARAHKETGAPISTHTGRGT-RMGLEQLDILEEEGVDPSRVV 187 (308)
T ss_dssp SSB-ESEEEEEEBTTBCEHHHHHHHHHHHHHHHHHT-EEEEEESTTG-TCHHHHHHHHHHTT--GGGEE
T ss_pred CccchhheeEeeccCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCCCC-cCHHHHHHHHHHcCCChhHeE
Confidence 011111122221 21234679999999998 677544444455788887763
No 182
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=54.49 E-value=51 Score=36.13 Aligned_cols=82 Identities=16% Similarity=0.056 Sum_probs=41.1
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchh-hhhHHhhhcCCcEEEEEecCCC---------CCCCHHHHHHHHHHHhc
Q 002584 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYE-AAIDDAILSGKVELIKIPVEVR---------TAPTMEQVEKFASLVSN 344 (904)
Q Consensus 275 pT~eDLa~L~elGIKTVIDLRsee~e~~~~~-a~e~~~~e~~GI~yIhIPV~d~---------~~Ps~e~I~afleil~d 344 (904)
++++++....+.+=-.|||.|+......... ..+-..-..+|- +++|+... ..+.++.++++++-+--
T Consensus 7 vs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 84 (281)
T PRK11493 7 VAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGA--VFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV 84 (281)
T ss_pred cCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCC--EEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 5677776555443357999997531110000 001001122333 34443211 12345666666655422
Q ss_pred CCCCcEEEeCcCCC
Q 002584 345 SSKKPLYLHSKEGV 358 (904)
Q Consensus 345 s~~~PVLVHCtAGK 358 (904)
..+.||+|+|..|.
T Consensus 85 ~~d~~VVvyc~~~~ 98 (281)
T PRK11493 85 NQDKHLVVYDEGNL 98 (281)
T ss_pred CCCCEEEEECCCCC
Confidence 45779999998775
No 183
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=54.01 E-value=43 Score=31.21 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=39.6
Q ss_pred CCHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 002584 275 VTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 352 (904)
Q Consensus 275 pT~eDLa~L~elG--IKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~~PVLV 352 (904)
++++++..+...+ --.|||+|+.+ +.. -...| .+|+|.... ...+..+.+......+.+++|
T Consensus 4 is~~~l~~~~~~~~~~~~iiDvR~~e-----~~~-----~hi~g--A~~ip~~~l----~~~~~~~~~~~~~~~~~~iv~ 67 (113)
T cd01531 4 ISPAQLKGWIRNGRPPFQVVDVRDED-----YAG-----GHIKG--SWHYPSTRF----KAQLNQLVQLLSGSKKDTVVF 67 (113)
T ss_pred CCHHHHHHHHHcCCCCEEEEEcCCcc-----cCC-----CcCCC--CEecCHHHH----hhCHHHHHHHHhcCCCCeEEE
Confidence 5677777776554 23599999852 110 01122 245555421 112222322221134579999
Q ss_pred eCcCCCChHHHHHHHH
Q 002584 353 HSKEGVWRTYAMVSRW 368 (904)
Q Consensus 353 HCtAGKDRTGaLvaLl 368 (904)
||..+..|....+..+
T Consensus 68 yC~~~~~r~~~aa~~l 83 (113)
T cd01531 68 HCALSQVRGPSAARKF 83 (113)
T ss_pred EeecCCcchHHHHHHH
Confidence 9994433777554443
No 184
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=53.97 E-value=11 Score=47.29 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=38.2
Q ss_pred CCCcEEEEEcCCchHHHHHHhcC------CCCCcEEEEeC-------C---CCcccCCCCcccHHHHHHHHH
Q 002584 754 ERVDFVACLGGDGVILHASNLFR------GAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 809 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~------~~~~PVLGIN~-------G---sLGFLt~~~~ed~~~~L~~il 809 (904)
-++|.+|++|||||+-.|..+.. ...+||+||-. | ++||-|..+. +.++++++.
T Consensus 477 ~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~GfdTA~~~--~~~~id~i~ 546 (745)
T TIGR02478 477 HKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALNE--ITEYCDNIK 546 (745)
T ss_pred cCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCCHHHHHHH--HHHHHHHHH
Confidence 36999999999999987776543 35699999853 2 6888876532 234455444
No 185
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=53.84 E-value=11 Score=47.23 Aligned_cols=54 Identities=19% Similarity=0.108 Sum_probs=38.8
Q ss_pred CCCcEEEEEcCCchHHHHHHhcC------CCCCcEEEEeC-------C---CCcccCCCCcccHHHHHHHHH
Q 002584 754 ERVDFVACLGGDGVILHASNLFR------GAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 809 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~------~~~~PVLGIN~-------G---sLGFLt~~~~ed~~~~L~~il 809 (904)
-++|.+|++|||||+-.+..+.. ...+||+||-. | ++||-|..+ .+-++++++.
T Consensus 477 ~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln--~~~~~id~i~ 546 (762)
T cd00764 477 YGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALN--ALMKYCDRIK 546 (762)
T ss_pred cCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHH--HHHHHHHHHH
Confidence 46999999999999988766543 35799999953 3 688887653 3344555554
No 186
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=53.47 E-value=24 Score=41.95 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=29.2
Q ss_pred cEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCcCCCChHHHHHHHHHHHcCC
Q 002584 317 VELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (904)
Q Consensus 317 I~yIhIPV~d~~~Ps~e~I~afleil~ds~~~PVLVHCtAGKDRTGaLvaLlr~~lGV 374 (904)
++.+|+|+. .+...+.-+ ..++|++++|.+|. |+..++..+.. +|.
T Consensus 429 ~~a~niP~~--------~l~~~~~~l--~~~~~iivyC~~G~-rS~~aa~~L~~-~G~ 474 (482)
T PRK01269 429 VEVKSLPFY--------KLSTQFGDL--DQSKTYLLYCDRGV-MSRLQALYLRE-QGF 474 (482)
T ss_pred ceEEECCHH--------HHHHHHhhc--CCCCeEEEECCCCH-HHHHHHHHHHH-cCC
Confidence 566777764 222222222 34679999999999 98877666654 454
No 187
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=53.43 E-value=9.9 Score=38.70 Aligned_cols=36 Identities=17% Similarity=0.081 Sum_probs=26.2
Q ss_pred CCCcEEEEEcCCchHH-----HHHHhcCCCCCcEEEEeCCC
Q 002584 754 ERVDFVACLGGDGVIL-----HASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL-----~Aar~~~~~~~PVLGIN~Gs 789 (904)
..+|.||+.||.|+.. ...+......+|||||-.|.
T Consensus 41 ~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 81 (184)
T cd01743 41 LNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLGH 81 (184)
T ss_pred cCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEECHhH
Confidence 4689999999999843 33333334579999999884
No 188
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=53.27 E-value=19 Score=40.51 Aligned_cols=85 Identities=19% Similarity=0.179 Sum_probs=48.8
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-ccCCCcEEEEEcCCchH
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d-~~~~~DlVIvLGGDGTl 768 (904)
.++++||.-..-... ...++.+.|.+. ++.++- ++. ..|....+... .+. ...++|+||.||| |++
T Consensus 23 ~~~~livt~~~~~~~-~~~~v~~~l~~~-~~~~~~--~~~----~~p~~~~v~~~----~~~~~~~~~d~IIaiGG-Gs~ 89 (337)
T cd08177 23 ASRALVLTTPSLATK-LAERVASALGDR-VAGTFD--GAV----MHTPVEVTEAA----VAAAREAGADGIVAIGG-GST 89 (337)
T ss_pred CCeEEEEcChHHHHH-HHHHHHHHhccC-CcEEeC--CCC----CCCCHHHHHHH----HHHHHhcCCCEEEEeCC-cHH
Confidence 368999986543223 566788888543 443331 110 01111000000 001 1257899999999 999
Q ss_pred HHHHHhcCC-CCCcEEEEeC
Q 002584 769 LHASNLFRG-AVPPVISFNL 787 (904)
Q Consensus 769 L~Aar~~~~-~~~PVLGIN~ 787 (904)
+-+++.+.. ..+|++.|-+
T Consensus 90 iD~aK~ia~~~~~p~i~IPT 109 (337)
T cd08177 90 IDLAKAIALRTGLPIIAIPT 109 (337)
T ss_pred HHHHHHHHHHhcCCEEEEcC
Confidence 999987643 3689988875
No 189
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=53.25 E-value=36 Score=38.94 Aligned_cols=78 Identities=13% Similarity=0.180 Sum_probs=43.7
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeC
Q 002584 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHS 354 (904)
Q Consensus 275 pT~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~~PVLVHC 354 (904)
++.+++..+.+.+ -.|||.|+.+ + |. .-...| -+++|.. .+......+....+++++++|
T Consensus 5 is~~el~~~l~~~-~~ivDvR~~~-e---~~-----~ghIpg--Ai~ip~~--------~l~~~~~~~~~~~~~~IvvyC 64 (376)
T PRK08762 5 ISPAEARARAAQG-AVLIDVREAH-E---RA-----SGQAEG--ALRIPRG--------FLELRIETHLPDRDREIVLIC 64 (376)
T ss_pred eCHHHHHHHHhCC-CEEEECCCHH-H---Hh-----CCcCCC--CEECCHH--------HHHHHHhhhcCCCCCeEEEEc
Confidence 5777777766667 4799999864 1 11 001122 2444432 233333222124578999999
Q ss_pred cCCCChHHHHHHHHHHHcCC
Q 002584 355 KEGVWRTYAMVSRWRQYMAR 374 (904)
Q Consensus 355 tAGKDRTGaLvaLlr~~lGV 374 (904)
..|. |+..++.+++ ..|.
T Consensus 65 ~~G~-rs~~aa~~L~-~~G~ 82 (376)
T PRK08762 65 ASGT-RSAHAAATLR-ELGY 82 (376)
T ss_pred CCCc-HHHHHHHHHH-HcCC
Confidence 9987 7765544443 3454
No 190
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=52.33 E-value=38 Score=39.20 Aligned_cols=81 Identities=17% Similarity=0.255 Sum_probs=46.2
Q ss_pred CCCHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 002584 274 QVTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 352 (904)
Q Consensus 274 qpT~eDLa~L~elGI-KTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~~PVLV 352 (904)
.++++++..+.+.+- -.|||.|+.+ + +. .....| -+++|+..... .+. +..+ ..++|+++
T Consensus 288 ~Is~~el~~~l~~~~~~~lIDvR~~~-e---f~-----~ghIpG--Ainip~~~l~~--~~~----~~~l--~~d~~iVv 348 (392)
T PRK07878 288 TITPRELKEWLDSGKKIALIDVREPV-E---WD-----IVHIPG--AQLIPKSEILS--GEA----LAKL--PQDRTIVL 348 (392)
T ss_pred ccCHHHHHHHHhCCCCeEEEECCCHH-H---Hh-----cCCCCC--CEEcChHHhcc--hhH----HhhC--CCCCcEEE
Confidence 578888887766653 3699999975 1 11 011223 35666642111 111 1122 35679999
Q ss_pred eCcCCCChHHHHHHHHHHHcCCC
Q 002584 353 HSKEGVWRTYAMVSRWRQYMARC 375 (904)
Q Consensus 353 HCtAGKDRTGaLvaLlr~~lGV~ 375 (904)
+|..|. |+..++..++. .|.+
T Consensus 349 yC~~G~-rS~~aa~~L~~-~G~~ 369 (392)
T PRK07878 349 YCKTGV-RSAEALAALKK-AGFS 369 (392)
T ss_pred EcCCCh-HHHHHHHHHHH-cCCC
Confidence 999997 87655544433 4643
No 191
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=51.57 E-value=28 Score=36.02 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCchHH------HHHHhcCCCCCcEEEEeCCC
Q 002584 755 RVDFVACLGGDGVIL------HASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 755 ~~DlVIvLGGDGTlL------~Aar~~~~~~~PVLGIN~Gs 789 (904)
.+|.+|+.||.|..- ...+.+ ...+|||||-+|+
T Consensus 43 ~~~~iilsgGp~~~~~~~~~~~~i~~~-~~~~PiLGIClG~ 82 (193)
T PRK08857 43 NPTHLVISPGPCTPNEAGISLQAIEHF-AGKLPILGVCLGH 82 (193)
T ss_pred CCCEEEEeCCCCChHHCcchHHHHHHh-cCCCCEEEEcHHH
Confidence 478999999998753 333333 4579999999885
No 192
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=51.44 E-value=29 Score=39.66 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=43.0
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-ccCCCcEEEEEcCCchH
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d-~~~~~DlVIvLGGDGTl 768 (904)
.++++||.-..-.......++.+.|.+ .++++.+...+. ..|....+... .+. ...++|+||.||| |..
T Consensus 26 ~~~~lvvt~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~d~IIaiGG-GS~ 95 (374)
T cd08189 26 VKKVLIVTDKGLVKLGLLDKVLEALEG-AGIEYAVYDGVP----PDPTIENVEAG----LALYRENGCDAILAVGG-GSV 95 (374)
T ss_pred CCeEEEEeCcchhhcccHHHHHHHHHh-cCCeEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-ccH
Confidence 378999987553222345677777754 467665433321 11111111000 000 1347899999999 999
Q ss_pred HHHHHhc
Q 002584 769 LHASNLF 775 (904)
Q Consensus 769 L~Aar~~ 775 (904)
+-+++..
T Consensus 96 ~D~aK~i 102 (374)
T cd08189 96 IDCAKAI 102 (374)
T ss_pred HHHHHHH
Confidence 9988754
No 193
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=51.03 E-value=18 Score=41.85 Aligned_cols=77 Identities=16% Similarity=0.094 Sum_probs=44.0
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHH
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL 769 (904)
.++++|+....-.......++.+.|.+ .|+++.+...+. ..|....+.... ..--..++|+||.||| |..+
T Consensus 49 ~~~~lvv~~~~~~~~g~~~~v~~~L~~-~gi~~~~~~~v~----~~P~~~~v~~~~---~~~r~~~~D~IiavGG-GS~i 119 (395)
T PRK15454 49 LKHLFVMADSFLHQAGMTAGLTRSLAV-KGIAMTLWPCPV----GEPCITDVCAAV---AQLRESGCDGVIAFGG-GSVL 119 (395)
T ss_pred CCEEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEECCCC----CCcCHHHHHHHH---HHHHhcCcCEEEEeCC-hHHH
Confidence 378888876543333456778888854 577766543322 111111110000 0001357999999999 9999
Q ss_pred HHHHhc
Q 002584 770 HASNLF 775 (904)
Q Consensus 770 ~Aar~~ 775 (904)
-+++.+
T Consensus 120 D~AKai 125 (395)
T PRK15454 120 DAAKAV 125 (395)
T ss_pred HHHHHH
Confidence 988764
No 194
>PRK06490 glutamine amidotransferase; Provisional
Probab=50.70 E-value=28 Score=37.60 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=44.3
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchH--
Q 002584 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI-- 768 (904)
Q Consensus 691 k~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTl-- 768 (904)
.+|+||.+...+-. ..+.+||.+ .|.++.+-....+ ....+-.+++|.+|+.||=++.
T Consensus 8 ~~vlvi~h~~~~~~---g~l~~~l~~-~g~~~~v~~~~~~----------------~~~p~~l~~~dgvii~Ggp~~~~d 67 (239)
T PRK06490 8 RPVLIVLHQERSTP---GRVGQLLQE-RGYPLDIRRPRLG----------------DPLPDTLEDHAGAVIFGGPMSAND 67 (239)
T ss_pred ceEEEEecCCCCCC---hHHHHHHHH-CCCceEEEeccCC----------------CCCCCcccccCEEEEECCCCCCCC
Confidence 47899988774432 235566643 4555443211000 0000112458999999998753
Q ss_pred ----H----HHHHhcCCCCCcEEEEeCCC
Q 002584 769 ----L----HASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 769 ----L----~Aar~~~~~~~PVLGIN~Gs 789 (904)
+ ...+.+....+|||||-+|+
T Consensus 68 ~~~wi~~~~~~i~~~~~~~~PvLGIC~G~ 96 (239)
T PRK06490 68 PDDFIRREIDWISVPLKENKPFLGICLGA 96 (239)
T ss_pred CchHHHHHHHHHHHHHHCCCCEEEECHhH
Confidence 2 22333334679999999985
No 195
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=50.13 E-value=28 Score=38.98 Aligned_cols=87 Identities=22% Similarity=0.277 Sum_probs=47.6
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-ccCCCcEEEEEcCCchH
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d-~~~~~DlVIvLGGDGTl 768 (904)
.++++||.-..-.......++.+.|.+. +.+.+..++. ..|....+... .+. ...++|+||.+|| |..
T Consensus 22 ~~~~lvv~~~~~~~~g~~~~v~~~l~~~--~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~d~IiaiGG-Gs~ 90 (332)
T cd08180 22 NKRVLIVTDPFMVKSGMLDKVTDHLDSS--IEVEIFSDVV----PDPPIEVVAKG----IKKFLDFKPDIVIALGG-GSA 90 (332)
T ss_pred CCeEEEEeCchhhhCccHHHHHHHHHhc--CcEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEECC-chH
Confidence 3788988854322223456777888542 4443322221 11111111000 000 1246899999999 999
Q ss_pred HHHHHhc----C----CCCCcEEEEeC
Q 002584 769 LHASNLF----R----GAVPPVISFNL 787 (904)
Q Consensus 769 L~Aar~~----~----~~~~PVLGIN~ 787 (904)
+-+++.+ . ...+|++.|-+
T Consensus 91 ~D~aKa~a~~~~~~~~~~~~p~i~VPT 117 (332)
T cd08180 91 IDAAKAIIYFAKKLGKKKKPLFIAIPT 117 (332)
T ss_pred HHHHHHHHHHHhCCCCCCCCCEEEeCC
Confidence 9888842 1 23479999875
No 196
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=49.79 E-value=75 Score=36.99 Aligned_cols=101 Identities=20% Similarity=0.171 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCChhhh-hhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHHHHHHhcCCCCCcE
Q 002584 704 MEEAKEVASFLYHQEKMNILVEPDVHDI-FARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPV 782 (904)
Q Consensus 704 ~~~a~el~~~L~~~~gi~V~ve~~v~~~-l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PV 782 (904)
.+..+.+.+-+. .-+..|++-..-.+. ....|. .+....-.+..++...+|++|+-||=||+..+.+. ++|+
T Consensus 251 ~~l~~~~~~a~~-~l~~~vi~~~~~~~~~~~~~p~--n~~v~~~~p~~~~l~~ad~vI~hGG~gtt~eaL~~----gvP~ 323 (406)
T COG1819 251 VELLAIVLEALA-DLDVRVIVSLGGARDTLVNVPD--NVIVADYVPQLELLPRADAVIHHGGAGTTSEALYA----GVPL 323 (406)
T ss_pred HHHHHHHHHHHh-cCCcEEEEeccccccccccCCC--ceEEecCCCHHHHhhhcCEEEecCCcchHHHHHHc----CCCE
Confidence 455566666664 345555554322111 111221 11111112234467889999999999999998776 6899
Q ss_pred EEEeCC-------------CCcccCC---CCcccHHHHHHHHHcC
Q 002584 783 ISFNLG-------------SLGFLTS---HPFEDYRQDLRQVIYG 811 (904)
Q Consensus 783 LGIN~G-------------sLGFLt~---~~~ed~~~~L~~il~G 811 (904)
+.+-.+ ..|.... .+.+.+.+++++++..
T Consensus 324 vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~ 368 (406)
T COG1819 324 VVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLAD 368 (406)
T ss_pred EEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcC
Confidence 887654 2343322 4455666666666654
No 197
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=49.48 E-value=29 Score=39.54 Aligned_cols=85 Identities=15% Similarity=0.123 Sum_probs=50.0
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-ccCCCcEEEEEcCCchHH
Q 002584 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVIL 769 (904)
Q Consensus 691 k~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d-~~~~~DlVIvLGGDGTlL 769 (904)
++++||....-.. ....++.+.|.+ .++.+.+. .+. ..|....+... .+. ...++|+||.+|| |+++
T Consensus 30 ~~~livtd~~~~~-~~~~~v~~~l~~-~~~~~~~~-~~~----~ep~~~~v~~~----~~~~~~~~~d~IIavGG-Gsv~ 97 (366)
T PRK09423 30 KRALVIADEFVLG-IVGDRVEASLKE-AGLTVVFE-VFN----GECSDNEIDRL----VAIAEENGCDVVIGIGG-GKTL 97 (366)
T ss_pred CEEEEEEChhHHH-HHHHHHHHHHHh-CCCeEEEE-EeC----CCCCHHHHHHH----HHHHHhcCCCEEEEecC-hHHH
Confidence 7899998554322 255778888854 46655322 110 11111111100 001 1246899999999 9999
Q ss_pred HHHHhcCC-CCCcEEEEeC
Q 002584 770 HASNLFRG-AVPPVISFNL 787 (904)
Q Consensus 770 ~Aar~~~~-~~~PVLGIN~ 787 (904)
-+++.... ..+|++.|-+
T Consensus 98 D~aK~iA~~~~~p~i~IPT 116 (366)
T PRK09423 98 DTAKAVADYLGVPVVIVPT 116 (366)
T ss_pred HHHHHHHHHcCCCEEEeCC
Confidence 99987642 4689998875
No 198
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=49.45 E-value=17 Score=42.50 Aligned_cols=73 Identities=21% Similarity=0.329 Sum_probs=40.9
Q ss_pred cCCCEEEEEecCCh---hHHHHHHHHHHHHhc-CCCeEEEEcCChh---hhhhcCCCCccceeeeccCcccccCCCcEEE
Q 002584 688 TTPRTVLVLKKPGP---ALMEEAKEVASFLYH-QEKMNILVEPDVH---DIFARIPGFGFVQTFYLQDTSDLHERVDFVA 760 (904)
Q Consensus 688 ~~pk~VlIv~K~~~---~~~~~a~el~~~L~~-~~gi~V~ve~~v~---~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVI 760 (904)
..||+++|+..|.. ......+.+..++.- .-...|+|-+..- +.+.+++. ++ -..+|-||
T Consensus 156 ~RPknllvFinPfgGkG~g~ki~e~V~~~F~la~v~tkvivTErAnhA~d~~~ei~~------------~~-~~~yDGiv 222 (516)
T KOG1115|consen 156 ERPKNLLVFINPFGGKGNGSKIWETVSKIFILAKVNTKVIVTERANHAFDVMAEIQN------------KE-LHTYDGIV 222 (516)
T ss_pred cCCccEEEEEcCCCCCCcccchhhhhhhhEEeeecceeEEEEccccchhhhhhhCCH------------hh-hhhcccEE
Confidence 46899998888752 233344455444321 1345566655432 23322221 12 24589999
Q ss_pred EEcCCchHHHHHH
Q 002584 761 CLGGDGVILHASN 773 (904)
Q Consensus 761 vLGGDGTlL~Aar 773 (904)
++||||-|=...+
T Consensus 223 ~VGGDG~FnEiL~ 235 (516)
T KOG1115|consen 223 AVGGDGFFNEILN 235 (516)
T ss_pred EecCchhHHHHHh
Confidence 9999997644433
No 199
>PRK07053 glutamine amidotransferase; Provisional
Probab=49.33 E-value=44 Score=36.03 Aligned_cols=80 Identities=16% Similarity=0.117 Sum_probs=45.3
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCch--
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV-- 767 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGT-- 767 (904)
.++|+||.+...+-.. .+.+||.+ .|+.+.+-..... .. ...+ ..++|.+|+.||-..
T Consensus 2 m~~ilviqh~~~e~~g---~i~~~L~~-~g~~~~v~~~~~~---~~------------~~~~-~~~~d~lii~Ggp~~~~ 61 (234)
T PRK07053 2 MKTAVAIRHVAFEDLG---SFEQVLGA-RGYRVRYVDVGVD---DL------------ETLD-ALEPDLLVVLGGPIGVY 61 (234)
T ss_pred CceEEEEECCCCCCCh---HHHHHHHH-CCCeEEEEecCCC---cc------------CCCC-ccCCCEEEECCCCCCCC
Confidence 3679999987754322 25667754 4655443211000 00 0011 235899999997532
Q ss_pred ----------HHHHHHhcCCCCCcEEEEeCCC
Q 002584 768 ----------ILHASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 768 ----------lL~Aar~~~~~~~PVLGIN~Gs 789 (904)
++...+.+...++|||||-+|+
T Consensus 62 d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~ 93 (234)
T PRK07053 62 DDELYPFLAPEIALLRQRLAAGLPTLGICLGA 93 (234)
T ss_pred CCCcCCcHHHHHHHHHHHHHCCCCEEEECccH
Confidence 2233344445689999999886
No 200
>PRK15378 inositol phosphate phosphatase SopB; Provisional
Probab=49.06 E-value=11 Score=44.85 Aligned_cols=19 Identities=32% Similarity=0.158 Sum_probs=15.7
Q ss_pred EEeCcCCCChHHHHHHHHH
Q 002584 351 YLHSKEGVWRTYAMVSRWR 369 (904)
Q Consensus 351 LVHCtAGKDRTGaLvaLlr 369 (904)
.+.|++||||||+|=+-+.
T Consensus 460 ~wNCkSGKDRTGmmD~eiK 478 (564)
T PRK15378 460 AWNCKSGKDRTGMMDSEIK 478 (564)
T ss_pred eeccCCCCccccchHHHHH
Confidence 6899999999998766553
No 201
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=49.05 E-value=30 Score=39.23 Aligned_cols=73 Identities=22% Similarity=0.232 Sum_probs=40.5
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-ccCCCcEEEEEcCCchH
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d-~~~~~DlVIvLGGDGTl 768 (904)
.++++||.-.... ....+.+.|.+ .++++.+...+. ..|.+..+... .+. ...++|+||.+|| |+.
T Consensus 23 ~~~~livtd~~~~---~~~~~~~~l~~-~~~~~~~~~~~~----~~p~~~~v~~~----~~~~~~~~~D~IIavGG-Gs~ 89 (367)
T cd08182 23 GKRVLLVTGPRSA---IASGLTDILKP-LGTLVVVFDDVQ----PNPDLEDLAAG----IRLLREFGPDAVLAVGG-GSV 89 (367)
T ss_pred CCeEEEEeCchHH---HHHHHHHHHHH-cCCeEEEEcCcC----CCcCHHHHHHH----HHHHHhcCcCEEEEeCC-cHH
Confidence 3789999866543 33456666653 456655433221 11111111100 001 1246899999999 999
Q ss_pred HHHHHhc
Q 002584 769 LHASNLF 775 (904)
Q Consensus 769 L~Aar~~ 775 (904)
+-+++.+
T Consensus 90 ~D~aK~i 96 (367)
T cd08182 90 LDTAKAL 96 (367)
T ss_pred HHHHHHH
Confidence 9988765
No 202
>PF05925 IpgD: Enterobacterial virulence protein IpgD; InterPro: IPR008108 Some Gram-negative animal enteropathogens express a specialised secretion system to directly "inject" exotoxins into the cytoplasm of host cells. Dubbed the type III secretion system, it is of specific interest to researchers, as the components of such a system are only expressed in pathogenic strains []. The system is composed of structural proteins and exotoxin effectors; these are often encoded on large virulence plasmids or on the bacterial chromosome itself []. The Shigella flexneri invasion plasmid antigen (ipa) genes are found on such a plasmid, and are arranged into an operon. Directly upstream of this operon is another cluster of type III genes, termed ipgD, E and F []. Deletion mutational studies of all three genes showed they were essential for virulence in S. flexneri, and that IpgD is secreted by the type III needle to the outside of the bacterial cell []. Further analysis of the ipg operon confirmed that the IpgD gene product is chaperoned by the IpgE protein while in the bacterial cytoplasm []. More recently, a large study into the spread of the ipa/mxi/ipg pathogenicity islands through their relevant plasmid has revealed that homologues exist in many different Shigella strains, as well as enteroinvasive Escherichia coli and Salmonella spp []. There is evidence that the genes were acquired from Shigella through lateral transfer, like most of the other type III secretion system virulence plasmids.; GO: 0016791 phosphatase activity, 0009405 pathogenesis; PDB: 4DID_B.
Probab=48.78 E-value=5.8 Score=47.44 Aligned_cols=23 Identities=17% Similarity=-0.028 Sum_probs=0.0
Q ss_pred CCCcEEEeCcCCCChHHHHHHHH
Q 002584 346 SKKPLYLHSKEGVWRTYAMVSRW 368 (904)
Q Consensus 346 ~~~PVLVHCtAGKDRTGaLvaLl 368 (904)
......+-|++||||||++-.-+
T Consensus 452 iGavp~~NCKSGKDRTG~lD~ei 474 (559)
T PF05925_consen 452 IGAVPCWNCKSGKDRTGMLDAEI 474 (559)
T ss_dssp -----------------------
T ss_pred hCCeeeccCccCCccccccHHHH
Confidence 34567789999999999775544
No 203
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=48.73 E-value=36 Score=39.50 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCCchHHHHHHhcC---CCCCcEEEEeC
Q 002584 754 ERVDFVACLGGDGVILHASNLFR---GAVPPVISFNL 787 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~---~~~~PVLGIN~ 787 (904)
++.|+||.+|| |+++-++..+. ..++|++-|.+
T Consensus 110 dr~d~IIaiGG-Gsv~D~ak~iA~~~~rgip~I~IPT 145 (389)
T PRK06203 110 DRHSYVLAIGG-GAVLDMVGYAAATAHRGVRLIRIPT 145 (389)
T ss_pred CCCceEEEeCC-cHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 45679999999 99999877663 44788888875
No 204
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=48.46 E-value=32 Score=38.75 Aligned_cols=86 Identities=19% Similarity=0.218 Sum_probs=49.9
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEE-cCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHH
Q 002584 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILV-EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (904)
Q Consensus 691 k~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~v-e~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL 769 (904)
++|+||.-...... ...++.+.|.+ .++++.+ ..+.. ..|....+.... ..+.+++|+||.||| |+++
T Consensus 25 ~kvlivtd~~~~~~-~~~~i~~~L~~-~~~~~~i~~~~~~----~~p~~~~v~~~~----~~~~~~~d~IIaiGG-Gsv~ 93 (332)
T cd08549 25 SKIMIVCGNNTYKV-AGKEIIERLES-NNFTKEVLERDSL----LIPDEYELGEVL----IKLDKDTEFLLGIGS-GTII 93 (332)
T ss_pred CcEEEEECCcHHHH-HHHHHHHHHHH-cCCeEEEEecCCC----CCCCHHHHHHHH----HHhhcCCCEEEEECC-cHHH
Confidence 67899987664322 13677778754 4555433 11211 011111111110 112227899999999 9999
Q ss_pred HHHHhcCC-CCCcEEEEeC
Q 002584 770 HASNLFRG-AVPPVISFNL 787 (904)
Q Consensus 770 ~Aar~~~~-~~~PVLGIN~ 787 (904)
-++..... ..+|++.|.+
T Consensus 94 D~aK~iA~~~gip~I~VPT 112 (332)
T cd08549 94 DLVKFVSFKVGKPFISVPT 112 (332)
T ss_pred HHHHHHHHHcCCCEEEeCC
Confidence 99987642 4789998875
No 205
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=47.52 E-value=38 Score=41.29 Aligned_cols=86 Identities=17% Similarity=0.234 Sum_probs=50.1
Q ss_pred cCCCEEEEEecCCh---hHHHHHHHHHHHHhcCCCeE--EEEcCCh--hhhhhcCCCCccceeeeccCcccccCCCcEEE
Q 002584 688 TTPRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMN--ILVEPDV--HDIFARIPGFGFVQTFYLQDTSDLHERVDFVA 760 (904)
Q Consensus 688 ~~pk~VlIv~K~~~---~~~~~a~el~~~L~~~~gi~--V~ve~~v--~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVI 760 (904)
+.+++++|+..|.. .+.+.++..++-|....++. |++-..- +..+. + .....++|-||
T Consensus 177 ~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv~T~~~~HArei~--------r-------t~dl~kyDgIv 241 (579)
T KOG1116|consen 177 KRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVVLTTRPNHAREIV--------R-------TLDLGKYDGIV 241 (579)
T ss_pred CCCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEEEecCccHHHHHH--------H-------hhhccccceEE
Confidence 35788888888863 56777766655554444544 3332211 11111 0 11235789999
Q ss_pred EEcCCchHHHHHHhc-CC------CCCcEEEEeCC
Q 002584 761 CLGGDGVILHASNLF-RG------AVPPVISFNLG 788 (904)
Q Consensus 761 vLGGDGTlL~Aar~~-~~------~~~PVLGIN~G 788 (904)
|+||||++-.+.+=+ .. ...||-=|-.|
T Consensus 242 ~vsGDGl~hEVlNGLl~R~D~~~~~klPigiiP~G 276 (579)
T KOG1116|consen 242 CVSGDGLLHEVLNGLLERPDWEAAVKLPIGIIPCG 276 (579)
T ss_pred EecCCcCHHHhhhccccccchhhHhcCceeEeecC
Confidence 999999998887733 22 24566444444
No 206
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=47.30 E-value=34 Score=39.10 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=41.8
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-ccCCCcEEEEEcCCchHH
Q 002584 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVIL 769 (904)
Q Consensus 691 k~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d-~~~~~DlVIvLGGDGTlL 769 (904)
++++||...... .+.++...|.+ .++++.+.... ..|....+... ... ...++|+||.+|| |..+
T Consensus 23 ~r~livtd~~~~---~~~~v~~~L~~-~g~~~~~~~~~-----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS~~ 88 (374)
T cd08183 23 RRVLLVTGASSL---RAAWLIEALRA-AGIEVTHVVVA-----GEPSVELVDAA----VAEARNAGCDVVIAIGG-GSVI 88 (374)
T ss_pred CcEEEEECCchH---HHHHHHHHHHH-cCCeEEEecCC-----CCcCHHHHHHH----HHHHHhcCCCEEEEecC-chHH
Confidence 789999876543 56678888854 56765543211 11111111000 001 1347899999999 9999
Q ss_pred HHHHhc
Q 002584 770 HASNLF 775 (904)
Q Consensus 770 ~Aar~~ 775 (904)
-+++..
T Consensus 89 D~aK~i 94 (374)
T cd08183 89 DAGKAI 94 (374)
T ss_pred HHHHHH
Confidence 988754
No 207
>PRK13566 anthranilate synthase; Provisional
Probab=47.00 E-value=40 Score=42.30 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=49.7
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCCh-hhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCch-
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDV-HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV- 767 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v-~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGT- 767 (904)
.++|+||-.-.. ....+.+||.+ .|.+|.+-+.- .... . + ..++|.||+.||-|+
T Consensus 526 g~~IlvID~~ds----f~~~l~~~Lr~-~G~~v~vv~~~~~~~~----------------~-~-~~~~DgVVLsgGpgsp 582 (720)
T PRK13566 526 GKRVLLVDHEDS----FVHTLANYFRQ-TGAEVTTVRYGFAEEM----------------L-D-RVNPDLVVLSPGPGRP 582 (720)
T ss_pred CCEEEEEECCCc----hHHHHHHHHHH-CCCEEEEEECCCChhH----------------h-h-hcCCCEEEECCCCCCh
Confidence 568988877642 24568888864 57777654321 1100 0 1 135899999999875
Q ss_pred ----HHHHHHhcCCCCCcEEEEeCCC
Q 002584 768 ----ILHASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 768 ----lL~Aar~~~~~~~PVLGIN~Gs 789 (904)
+....+.+...++|||||-+|.
T Consensus 583 ~d~~~~~lI~~a~~~~iPILGIClG~ 608 (720)
T PRK13566 583 SDFDCKATIDAALARNLPIFGVCLGL 608 (720)
T ss_pred hhCCcHHHHHHHHHCCCcEEEEehhH
Confidence 4445555556689999999985
No 208
>CHL00101 trpG anthranilate synthase component 2
Probab=46.50 E-value=16 Score=37.67 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCchHHH-----HHHhcCCCCCcEEEEeCCC
Q 002584 755 RVDFVACLGGDGVILH-----ASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 755 ~~DlVIvLGGDGTlL~-----Aar~~~~~~~PVLGIN~Gs 789 (904)
.+|.||+.||.|..-. .........+|||||-+|.
T Consensus 43 ~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGIClG~ 82 (190)
T CHL00101 43 NIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCLGH 82 (190)
T ss_pred CCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEEchhH
Confidence 5899999999998633 2222224579999999985
No 209
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=46.40 E-value=70 Score=39.40 Aligned_cols=44 Identities=7% Similarity=-0.044 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHhcCCCCcEEEeCcCCCChHHHHHHHHHHHcCCC
Q 002584 330 PTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (904)
Q Consensus 330 Ps~e~I~afleil~ds~~~PVLVHCtAGKDRTGaLvaLlr~~lGV~ 375 (904)
.+.+.+.++++-+--..++||++||.+|. |++.++..+ ..+|.+
T Consensus 206 k~~~el~~~~~~~Gi~~~~~VVvYC~sG~-rAa~~~~~L-~~lG~~ 249 (610)
T PRK09629 206 RIRQDMPEILRDLGITPDKEVITHCQTHH-RSGFTYLVA-KALGYP 249 (610)
T ss_pred CCHHHHHHHHHHcCCCCCCCEEEECCCCh-HHHHHHHHH-HHcCCC
Confidence 44566666654332245789999999997 877665554 456754
No 210
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=45.50 E-value=35 Score=39.17 Aligned_cols=76 Identities=14% Similarity=0.081 Sum_probs=42.5
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHHH
Q 002584 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (904)
Q Consensus 691 k~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL~ 770 (904)
++++||....-.......++.+.|.+ .++++.+-..+.. .+....+.. .-..-...++|+||.||| |.++-
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~-~~~~~~~f~~v~~----~~~~~~v~~---~~~~~~~~~~D~IIaiGG-GS~iD 93 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAA-AGVEVEVFDGVLP----DLPRSELCD---AASAAARAGPDVIIGLGG-GSCID 93 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHH-cCCeEEEECCCCC----CcCHHHHHH---HHHHHHhcCCCEEEEeCC-chHHH
Confidence 78999986442223456677777754 4676654333210 000000000 000011357899999999 99999
Q ss_pred HHHhc
Q 002584 771 ASNLF 775 (904)
Q Consensus 771 Aar~~ 775 (904)
+++.+
T Consensus 94 ~aK~i 98 (386)
T cd08191 94 LAKIA 98 (386)
T ss_pred HHHHH
Confidence 88865
No 211
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=45.06 E-value=25 Score=39.93 Aligned_cols=76 Identities=21% Similarity=0.362 Sum_probs=39.0
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHHH
Q 002584 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (904)
Q Consensus 691 k~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL~ 770 (904)
++|+||..+.-.......++.+.|.. ....++ .++. ..|....+..... -..+...++|+||.||| |+++-
T Consensus 24 ~r~lvVtd~~~~~~g~~~~v~~~L~~-~~~~~~--~~v~----~~pt~~~v~~~~~-~~~~~~~~~D~IIaiGG-GSviD 94 (355)
T TIGR03405 24 RRVVVVTFPEARALGLARRLEALLGG-RLAALI--DDVA----PNPDVAQLDGLYA-RLWGDEGACDLVIALGG-GSVID 94 (355)
T ss_pred CeEEEEECcchhhcchHHHHHHHhcc-CcEEEe--CCCC----CCcCHHHHHHHHH-HHHhcCCCCCEEEEeCC-ccHHH
Confidence 78999986553223456677777743 233332 2111 0111110000000 00011135899999999 99998
Q ss_pred HHHhc
Q 002584 771 ASNLF 775 (904)
Q Consensus 771 Aar~~ 775 (904)
+++..
T Consensus 95 ~aK~i 99 (355)
T TIGR03405 95 TAKVL 99 (355)
T ss_pred HHHHH
Confidence 88754
No 212
>PRK09875 putative hydrolase; Provisional
Probab=44.83 E-value=1e+02 Score=34.59 Aligned_cols=43 Identities=9% Similarity=0.247 Sum_probs=27.4
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEE
Q 002584 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELI 320 (904)
Q Consensus 276 T~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yI 320 (904)
..+++..++++|.+||||..+..... .+....+..+.-|+++|
T Consensus 36 ~~~el~~~~~~Gg~tiVd~T~~g~GR--d~~~l~~is~~tgv~Iv 78 (292)
T PRK09875 36 ICQEMNDLMTRGVRNVIEMTNRYMGR--NAQFMLDVMRETGINVV 78 (292)
T ss_pred HHHHHHHHHHhCCCeEEecCCCccCc--CHHHHHHHHHHhCCcEE
Confidence 34567889999999999998875222 11233444555565554
No 213
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=44.57 E-value=1.3e+02 Score=31.88 Aligned_cols=80 Identities=18% Similarity=0.188 Sum_probs=51.9
Q ss_pred hhHHHHHHcCCcEEEEcCCCcc--cCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCC-CcEEEeC
Q 002584 278 EGLKWLMEKGYKTIVDIRAERV--KDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK-KPLYLHS 354 (904)
Q Consensus 278 eDLa~L~elGIKTVIDLRsee~--e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~-~PVLVHC 354 (904)
+-++.+++.|++..+++-.... ..+.+.....+.+...|+..+.++=. ....+++++..++..+.+..+ .|+-+||
T Consensus 119 ~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~v~~li~~l~~~~~~~~~~~H~ 197 (265)
T cd03174 119 EAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT-VGLATPEEVAELVKALREALPDVPLGLHT 197 (265)
T ss_pred HHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh-cCCcCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 4466778899999999943331 11112122344566788988887754 346788998888887754433 6787777
Q ss_pred cCCC
Q 002584 355 KEGV 358 (904)
Q Consensus 355 tAGK 358 (904)
.--.
T Consensus 198 Hn~~ 201 (265)
T cd03174 198 HNTL 201 (265)
T ss_pred CCCC
Confidence 6555
No 214
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=44.48 E-value=27 Score=40.56 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=43.3
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-ccCCCcEEEEEcCCchHH
Q 002584 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVIL 769 (904)
Q Consensus 691 k~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d-~~~~~DlVIvLGGDGTlL 769 (904)
++|+||.-..-.....+.++.+.|.+ .++++.+-.++. ..|....+... .+. ...++|+||.||| |.++
T Consensus 24 ~~vlivt~~~~~~~g~~~~v~~~L~~-~gi~~~~f~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GSvi 93 (414)
T cd08190 24 RRVCLVTDPNLAQLPPVKVVLDSLEA-AGINFEVYDDVR----VEPTDESFKDA----IAFAKKGQFDAFVAVGG-GSVI 93 (414)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHH-cCCcEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-ccHH
Confidence 78999987663333456778888864 566665432221 01111111000 000 1346899999999 9999
Q ss_pred HHHHhc
Q 002584 770 HASNLF 775 (904)
Q Consensus 770 ~Aar~~ 775 (904)
-+++..
T Consensus 94 D~AKai 99 (414)
T cd08190 94 DTAKAA 99 (414)
T ss_pred HHHHHH
Confidence 887654
No 215
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=44.47 E-value=43 Score=37.85 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=17.6
Q ss_pred cEEEeCc-CCCChHHHHHHHHHHHcCC
Q 002584 349 PLYLHSK-EGVWRTYAMVSRWRQYMAR 374 (904)
Q Consensus 349 PVLVHCt-AGKDRTGaLvaLlr~~lGV 374 (904)
.++++|. .|. |++.++.++.. +|.
T Consensus 76 ~vvvyC~~gG~-RS~~aa~~L~~-~G~ 100 (311)
T TIGR03167 76 QPLLYCWRGGM-RSGSLAWLLAQ-IGF 100 (311)
T ss_pred cEEEEECCCCh-HHHHHHHHHHH-cCC
Confidence 4999995 676 99977766654 565
No 216
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=44.34 E-value=46 Score=38.04 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=50.1
Q ss_pred cCCCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEE--EcCChhhhhhcCCCCccceeeeccC-cccccCCCcEEEEEcC
Q 002584 688 TTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNIL--VEPDVHDIFARIPGFGFVQTFYLQD-TSDLHERVDFVACLGG 764 (904)
Q Consensus 688 ~~pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~--ve~~v~~~l~~~~~~~~~~~~~~~~-~~d~~~~~DlVIvLGG 764 (904)
..+++++||.-..-.. ....++.+.|.+ .++.+. +-+.... .|.+..+......- ......++|+||.+||
T Consensus 24 ~~~~~~lvVtd~~v~~-~~~~~v~~~l~~-~g~~~~~~v~~~~e~----~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGG 97 (354)
T cd08199 24 EGSGRRFVVVDQNVDK-LYGKKLREYFAH-HNIPLTILVLRAGEA----AKTMDTVLKIVDALDAFGISRRREPVLAIGG 97 (354)
T ss_pred cCCCeEEEEECccHHH-HHHHHHHHHHHh-cCCceEEEEeCCCCC----CCCHHHHHHHHHHHHHcCCCCCCCEEEEECC
Confidence 3468899998555321 134678888854 455433 2222110 01111110000000 0112234599999999
Q ss_pred CchHHHHHHhcC---CCCCcEEEEeC
Q 002584 765 DGVILHASNLFR---GAVPPVISFNL 787 (904)
Q Consensus 765 DGTlL~Aar~~~---~~~~PVLGIN~ 787 (904)
|+++-++.... ..++|++-|.+
T Consensus 98 -G~v~D~ak~~A~~~~rg~p~i~VPT 122 (354)
T cd08199 98 -GVLTDVAGLAASLYRRGTPYVRIPT 122 (354)
T ss_pred -cHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 99999888764 55788877765
No 217
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=44.10 E-value=40 Score=42.29 Aligned_cols=78 Identities=19% Similarity=0.232 Sum_probs=48.0
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchH-
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI- 768 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTl- 768 (904)
.++|+||-.-.. ....+.+||.+ .|+++.+-+.... .+..+ ..++|.||+.||-|+.
T Consensus 516 ~~~IlVID~gds----~~~~l~~~L~~-~G~~v~vv~~~~~----------------~~~~~-~~~~DgLILsgGPGsp~ 573 (717)
T TIGR01815 516 GRRILLVDHEDS----FVHTLANYLRQ-TGASVTTLRHSHA----------------EAAFD-ERRPDLVVLSPGPGRPA 573 (717)
T ss_pred CCEEEEEECCCh----hHHHHHHHHHH-CCCeEEEEECCCC----------------hhhhh-hcCCCEEEEcCCCCCch
Confidence 468999865532 24567788854 5776654322100 00000 1358999999999885
Q ss_pred ----HHHHHhcCCCCCcEEEEeCCC
Q 002584 769 ----LHASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 769 ----L~Aar~~~~~~~PVLGIN~Gs 789 (904)
....+.+...++|||||-+|.
T Consensus 574 d~~~~~~I~~~~~~~iPvLGICLG~ 598 (717)
T TIGR01815 574 DFDVAGTIDAALARGLPVFGVCLGL 598 (717)
T ss_pred hcccHHHHHHHHHCCCCEEEECHHH
Confidence 334444445689999999885
No 218
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=44.03 E-value=18 Score=45.41 Aligned_cols=55 Identities=15% Similarity=0.232 Sum_probs=37.2
Q ss_pred CCCcEEEEEcCCchHHHHHHhcC----------------------CCCCcEEEEeC-------C---CCcccCCCCcccH
Q 002584 754 ERVDFVACLGGDGVILHASNLFR----------------------GAVPPVISFNL-------G---SLGFLTSHPFEDY 801 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~----------------------~~~~PVLGIN~-------G---sLGFLt~~~~ed~ 801 (904)
-++|.+|++|||||+-.|..+.. ...+||+||-- | ++||-|..+ .+
T Consensus 93 ~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd~TiGfdTA~~--~i 170 (745)
T TIGR02478 93 RGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIGADSALH--RI 170 (745)
T ss_pred hCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCcCCCCHHHHHH--HH
Confidence 47999999999999987764221 23789999853 3 688887643 23
Q ss_pred HHHHHHHHc
Q 002584 802 RQDLRQVIY 810 (904)
Q Consensus 802 ~~~L~~il~ 810 (904)
-++++++..
T Consensus 171 ~~aid~i~~ 179 (745)
T TIGR02478 171 CEAIDAISS 179 (745)
T ss_pred HHHHHHHHh
Confidence 345555543
No 219
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=43.37 E-value=35 Score=38.48 Aligned_cols=83 Identities=14% Similarity=0.181 Sum_probs=49.0
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-ccCCCcEEEEEcCCchHH
Q 002584 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVIL 769 (904)
Q Consensus 691 k~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d-~~~~~DlVIvLGGDGTlL 769 (904)
++++||.-..-. .....++.+.|. ..++.+.+...+ |....+... .+. ...++|+||.+|| |+++
T Consensus 24 ~~~liv~d~~~~-~~~~~~l~~~L~-~~~~~~~~~~~~-------p~~~~v~~~----~~~~~~~~~D~iIavGG-Gs~~ 89 (347)
T cd08172 24 KRPLIVTGPRSW-AAAKPYLPESLA-AGEAFVLRYDGE-------CSEENIERL----AAQAKENGADVIIGIGG-GKVL 89 (347)
T ss_pred CeEEEEECHHHH-HHHHHHHHHHHh-cCeEEEEEeCCC-------CCHHHHHHH----HHHHHhcCCCEEEEeCC-cHHH
Confidence 678888875532 134566667773 345554433222 111111000 011 1246899999999 9999
Q ss_pred HHHHhcCC-CCCcEEEEeC
Q 002584 770 HASNLFRG-AVPPVISFNL 787 (904)
Q Consensus 770 ~Aar~~~~-~~~PVLGIN~ 787 (904)
-+++.+.. ..+|++.|.+
T Consensus 90 D~aK~ia~~~~~p~i~VPT 108 (347)
T cd08172 90 DTAKAVADRLGVPVITVPT 108 (347)
T ss_pred HHHHHHHHHhCCCEEEecC
Confidence 99997643 3689998875
No 220
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=42.18 E-value=45 Score=30.04 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=12.4
Q ss_pred CCCcEEEeCcCCCChH
Q 002584 346 SKKPLYLHSKEGVWRT 361 (904)
Q Consensus 346 ~~~PVLVHCtAGKDRT 361 (904)
.+.|++++|..|. |.
T Consensus 49 ~~~~ivl~c~~G~-~~ 63 (92)
T cd01532 49 RDTPIVVYGEGGG-ED 63 (92)
T ss_pred CCCeEEEEeCCCC-ch
Confidence 4679999999998 53
No 221
>PLN02335 anthranilate synthase
Probab=42.17 E-value=54 Score=35.01 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=45.4
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccc-cCCCcEEEEEcCCchH
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~-~~~~DlVIvLGGDGTl 768 (904)
.++|+||-.-+. ....|++||.+ .|+.+.+-+.-. + +.+++ ..++|.||+.||-|..
T Consensus 18 ~~~ilviD~~ds----ft~~i~~~L~~-~g~~~~v~~~~~--~---------------~~~~~~~~~~d~iVisgGPg~p 75 (222)
T PLN02335 18 NGPIIVIDNYDS----FTYNLCQYMGE-LGCHFEVYRNDE--L---------------TVEELKRKNPRGVLISPGPGTP 75 (222)
T ss_pred cCcEEEEECCCC----HHHHHHHHHHH-CCCcEEEEECCC--C---------------CHHHHHhcCCCEEEEcCCCCCh
Confidence 457888843332 24558888865 577666543210 0 00111 2357999999999855
Q ss_pred H------HHHHhcCCCCCcEEEEeCCC
Q 002584 769 L------HASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 769 L------~Aar~~~~~~~PVLGIN~Gs 789 (904)
- ...+.+ ...+|||||-+|.
T Consensus 76 ~d~~~~~~~~~~~-~~~~PiLGIClG~ 101 (222)
T PLN02335 76 QDSGISLQTVLEL-GPLVPLFGVCMGL 101 (222)
T ss_pred hhccchHHHHHHh-CCCCCEEEecHHH
Confidence 3 333332 3468999999884
No 222
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=42.06 E-value=42 Score=35.08 Aligned_cols=74 Identities=18% Similarity=0.241 Sum_probs=43.2
Q ss_pred EEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccc-cCCCcEEEEEcCCchHHH-
Q 002584 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVILH- 770 (904)
Q Consensus 693 VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~-~~~~DlVIvLGGDGTlL~- 770 (904)
||||-.-+. ....+++||.+ .+.++.+-+.-.. +.+++ ..++|.||..||=|..-.
T Consensus 2 il~idn~ds----ft~nl~~~l~~-~g~~v~v~~~~~~-----------------~~~~~~~~~~d~iIlsgGP~~p~~~ 59 (195)
T PRK07649 2 ILMIDNYDS----FTFNLVQFLGE-LGQELVVKRNDEV-----------------TISDIENMKPDFLMISPGPCSPNEA 59 (195)
T ss_pred EEEEeCCCc----cHHHHHHHHHH-CCCcEEEEeCCCC-----------------CHHHHhhCCCCEEEECCCCCChHhC
Confidence 455544442 24568888865 4676665432100 00111 135799999999987533
Q ss_pred -----HHHhcCCCCCcEEEEeCCC
Q 002584 771 -----ASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 771 -----Aar~~~~~~~PVLGIN~Gs 789 (904)
..+.+ ...+|||||-+|+
T Consensus 60 ~~~~~~i~~~-~~~~PvLGIClG~ 82 (195)
T PRK07649 60 GISMEVIRYF-AGKIPIFGVCLGH 82 (195)
T ss_pred CCchHHHHHh-cCCCCEEEEcHHH
Confidence 33333 3578999999885
No 223
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=41.53 E-value=65 Score=36.91 Aligned_cols=87 Identities=13% Similarity=0.185 Sum_probs=48.6
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeE--EEEcCChhhhhhcCCCCccceeeeccCccc-ccCCCc---EEEEEc
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMN--ILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVD---FVACLG 763 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~--V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d-~~~~~D---lVIvLG 763 (904)
.++++||....-... ...++.+.|.+ .+++ +++-+.... .|.+..+...+ +. ...++| +||.+|
T Consensus 23 ~~rvlvVtd~~v~~~-~~~~l~~~L~~-~g~~~~~~~~~~~e~----~k~~~~v~~~~----~~~~~~~~dr~~~IIAvG 92 (355)
T cd08197 23 ADKYLLVTDSNVEDL-YGHRLLEYLRE-AGAPVELLSVPSGEE----HKTLSTLSDLV----ERALALGATRRSVIVALG 92 (355)
T ss_pred CCeEEEEECccHHHH-HHHHHHHHHHh-cCCceEEEEeCCCCC----CCCHHHHHHHH----HHHHHcCCCCCcEEEEEC
Confidence 378999987663322 45678888864 3443 333221110 01110010000 00 112344 999999
Q ss_pred CCchHHHHHHhcC---CCCCcEEEEeC
Q 002584 764 GDGVILHASNLFR---GAVPPVISFNL 787 (904)
Q Consensus 764 GDGTlL~Aar~~~---~~~~PVLGIN~ 787 (904)
| |+++-++.... ..++|++-|-+
T Consensus 93 G-Gsv~D~ak~~A~~~~rgip~I~IPT 118 (355)
T cd08197 93 G-GVVGNIAGLLAALLFRGIRLVHIPT 118 (355)
T ss_pred C-cHHHHHHHHHHHHhccCCCEEEecC
Confidence 9 99999888754 24789998887
No 224
>PTZ00287 6-phosphofructokinase; Provisional
Probab=40.78 E-value=21 Score=47.44 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=36.3
Q ss_pred CCCcEEEEEcCCchHHHHHHhcC---CCCCc--EEEEeC-------C-----CCcccCCCCcccHHHHHHHHH
Q 002584 754 ERVDFVACLGGDGVILHASNLFR---GAVPP--VISFNL-------G-----SLGFLTSHPFEDYRQDLRQVI 809 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~---~~~~P--VLGIN~-------G-----sLGFLt~~~~ed~~~~L~~il 809 (904)
-++|.+|+||||||+-.|..+.. ..++| |+||-. | ++||=|..+ -+-+++.++.
T Consensus 927 l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~--~~seaI~nL~ 997 (1419)
T PTZ00287 927 LQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTK--VYASLIGNVL 997 (1419)
T ss_pred hCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHH--HHHHHHHHHH
Confidence 37999999999999998887653 24566 999853 3 566655432 2334555544
No 225
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=40.49 E-value=66 Score=36.53 Aligned_cols=83 Identities=16% Similarity=0.244 Sum_probs=46.7
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccc-cCCCcEEEEEcCCchHH
Q 002584 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL 769 (904)
Q Consensus 691 k~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~-~~~~DlVIvLGGDGTlL 769 (904)
++++||.-...... ...++.+.|.+...+.+++.++ +....+.... +.+ ..++|+||.+|| |+++
T Consensus 35 ~~~livtd~~~~~~-~~~~l~~~l~~~~~~~~~~~~~--------~t~~~v~~~~----~~~~~~~~d~IIaiGG-Gsv~ 100 (350)
T PRK00843 35 GRALIVTGPTTKKI-AGDRVEENLEDAGDVEVVIVDE--------ATMEEVEKVE----EKAKDVNAGFLIGVGG-GKVI 100 (350)
T ss_pred CeEEEEECCcHHHH-HHHHHHHHHHhcCCeeEEeCCC--------CCHHHHHHHH----HHhhccCCCEEEEeCC-chHH
Confidence 68899987764222 2355666665322233333332 1110010000 011 225799999999 9999
Q ss_pred HHHHhcCC-CCCcEEEEeC
Q 002584 770 HASNLFRG-AVPPVISFNL 787 (904)
Q Consensus 770 ~Aar~~~~-~~~PVLGIN~ 787 (904)
-++..... ..+|++-|.+
T Consensus 101 D~ak~vA~~rgip~I~IPT 119 (350)
T PRK00843 101 DVAKLAAYRLGIPFISVPT 119 (350)
T ss_pred HHHHHHHHhcCCCEEEeCC
Confidence 98887643 4789888875
No 226
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=40.37 E-value=24 Score=46.62 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=27.3
Q ss_pred CCCcEEEEEcCCchHHHHHHhcC-----CCCCcEEEEeC
Q 002584 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL 787 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN~ 787 (904)
-++|.+|++|||||+-.|..+.. +..++|+||--
T Consensus 195 l~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPK 233 (1328)
T PTZ00468 195 LKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPK 233 (1328)
T ss_pred hCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeE
Confidence 36899999999999988877643 34589999853
No 227
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=39.42 E-value=99 Score=32.36 Aligned_cols=99 Identities=18% Similarity=0.206 Sum_probs=54.9
Q ss_pred EEEEEecCC----hhHHHHH-HHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCc
Q 002584 692 TVLVLKKPG----PALMEEA-KEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (904)
Q Consensus 692 ~VlIv~K~~----~~~~~~a-~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDG 766 (904)
+||||.+.. ..-.+.+ ..+...|.+..+++|.+..+... + ..+..+.+|+||.....|
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~-~----------------~~~~L~~~Dvvv~~~~~~ 63 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDD-L----------------TPENLKGYDVVVFYNTGG 63 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGC-T----------------SHHCHCT-SEEEEE-SSC
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCccc-C----------------ChhHhcCCCEEEEECCCC
Confidence 689998883 2223333 44555555367899887655221 1 011235789999998887
Q ss_pred hH-----HHHHHhcCCCCCcEEEEe-CCCCcccCCCCcccHHHHHHHHHcCCCC
Q 002584 767 VI-----LHASNLFRGAVPPVISFN-LGSLGFLTSHPFEDYRQDLRQVIYGNNT 814 (904)
Q Consensus 767 Tl-----L~Aar~~~~~~~PVLGIN-~GsLGFLt~~~~ed~~~~L~~il~G~y~ 814 (904)
+- ..+.+.+...+.++++|+ .+...|- +.. ...+++-|.+.
T Consensus 64 ~~l~~~~~~al~~~v~~Ggglv~lH~~~~~~~~------~~~-~~~~l~Gg~f~ 110 (217)
T PF06283_consen 64 DELTDEQRAALRDYVENGGGLVGLHGAATDSFP------DWP-EYNELLGGYFK 110 (217)
T ss_dssp CGS-HHHHHHHHHHHHTT-EEEEEGGGGGCCHT------T-H-HHHHHHS--SE
T ss_pred CcCCHHHHHHHHHHHHcCCCEEEEcccccccch------hHH-HHHHeeCcccc
Confidence 43 345555556889999999 5545553 232 34457766643
No 228
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=39.21 E-value=30 Score=43.69 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=36.2
Q ss_pred CCCcEEEEEcCCchHHHHHHhc----------------------CCCCCcEEEEeC-------C---CCcccCCCCcccH
Q 002584 754 ERVDFVACLGGDGVILHASNLF----------------------RGAVPPVISFNL-------G---SLGFLTSHPFEDY 801 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~----------------------~~~~~PVLGIN~-------G---sLGFLt~~~~ed~ 801 (904)
.++|.+|++|||||+-.|..+. ....++|+||-- | ++||-|..+. +
T Consensus 96 ~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~gTD~TiGfdTAl~~--i 173 (762)
T cd00764 96 RGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGTDMTIGTDSALHR--I 173 (762)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCCCcCCCCHHHHHHH--H
Confidence 4799999999999998876331 123678998843 3 6888876542 3
Q ss_pred HHHHHHHH
Q 002584 802 RQDLRQVI 809 (904)
Q Consensus 802 ~~~L~~il 809 (904)
-++++++.
T Consensus 174 ~eaId~i~ 181 (762)
T cd00764 174 CEVVDAIT 181 (762)
T ss_pred HHHHHHHH
Confidence 34455554
No 229
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=37.78 E-value=1e+02 Score=31.50 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=30.0
Q ss_pred CCCcEEEEEcCCc---------hHHHHHHhcCCCCCcEEEEeCCCCc
Q 002584 754 ERVDFVACLGGDG---------VILHASNLFRGAVPPVISFNLGSLG 791 (904)
Q Consensus 754 ~~~DlVIvLGGDG---------TlL~Aar~~~~~~~PVLGIN~GsLG 791 (904)
+.+|+|++.||.+ .++...+.+...+.+|.+|-.|..-
T Consensus 65 ~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ 111 (196)
T PRK11574 65 GDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPAT 111 (196)
T ss_pred CCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHH
Confidence 4689999999964 2666677777788999999999854
No 230
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=37.59 E-value=67 Score=27.52 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=19.6
Q ss_pred CCCCcEEEeCcCCCChHHHHHHHHHHHcC
Q 002584 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMA 373 (904)
Q Consensus 345 s~~~PVLVHCtAGKDRTGaLvaLlr~~lG 373 (904)
..+.+|+|+|..|. |+..++..++. +|
T Consensus 48 ~~~~~vv~~c~~~~-~a~~~~~~l~~-~G 74 (89)
T cd00158 48 DKDKPIVVYCRSGN-RSARAAKLLRK-AG 74 (89)
T ss_pred CCCCeEEEEeCCCc-hHHHHHHHHHH-hC
Confidence 45789999999987 77766555544 44
No 231
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=36.70 E-value=72 Score=38.78 Aligned_cols=83 Identities=19% Similarity=0.166 Sum_probs=49.5
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCe----EEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCc
Q 002584 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKM----NILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (904)
Q Consensus 691 k~VlIv~K~~~~~~~~a~el~~~L~~~~gi----~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDG 766 (904)
-+|+||.|-.+ ....-..+.+.|.+. ++ .|.+..--.+.+.. .. .+...++|.||+-||=|
T Consensus 290 v~IalVGKY~~-~~daY~SI~eAL~~a-g~~~~~~V~~~~i~se~i~~------------~~-~~~L~~~dGIiLpGG~G 354 (525)
T TIGR00337 290 VTIGIVGKYVE-LKDSYLSVIEALKHA-GAKLDTKVNIKWIDSEDLEE------------EG-AEFLKGVDGILVPGGFG 354 (525)
T ss_pred cEEEEEeCCcC-CHHHHHHHHHHHHhC-ccccCCEEEEEEecHHHhhh------------hh-hhhhcCCCEEEeCCCCC
Confidence 57999999643 333346778887653 43 33322211111100 00 01234589999999875
Q ss_pred h-----HHHHHHhcCCCCCcEEEEeCC
Q 002584 767 V-----ILHASNLFRGAVPPVISFNLG 788 (904)
Q Consensus 767 T-----lL~Aar~~~~~~~PVLGIN~G 788 (904)
. .+.+++.+...++|+|||-+|
T Consensus 355 ~~~~~g~i~ai~~a~e~~iP~LGIClG 381 (525)
T TIGR00337 355 ERGVEGKILAIKYARENNIPFLGICLG 381 (525)
T ss_pred ChhhcChHHHHHHHHHcCCCEEEEcHH
Confidence 4 445677776678999999987
No 232
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=36.62 E-value=1.4e+02 Score=28.85 Aligned_cols=94 Identities=20% Similarity=0.106 Sum_probs=48.0
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccc-cCCCcEEEEEcCCch--
Q 002584 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV-- 767 (904)
Q Consensus 691 k~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~-~~~~DlVIvLGGDGT-- 767 (904)
++|+|+.-++-...+.+ .+.+.|.. .++++.+-...........+.. +.. ....++. ...+|.+|+.||.+.
T Consensus 2 ~~v~ill~~g~~~~e~~-~~~~~~~~-a~~~v~vvs~~~~~v~s~~g~~-i~~--~~~l~~~~~~~~D~liVpGg~~~~~ 76 (142)
T cd03132 2 RKVGILVADGVDAAELS-ALKAALKA-AGANVKVVAPTLGGVVDSDGKT-LEV--DQTYAGAPSVLFDAVVVPGGAEAAF 76 (142)
T ss_pred CEEEEEEcCCcCHHHHH-HHHHHHHH-CCCEEEEEecCcCceecCCCcE-Eec--ceeecCCChhhcCEEEECCCccCHH
Confidence 46888877775444433 34444433 3566554222111111111110 000 0111222 235899999999775
Q ss_pred -------HHHHHHhcCCCCCcEEEEeCCC
Q 002584 768 -------ILHASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 768 -------lL~Aar~~~~~~~PVLGIN~Gs 789 (904)
++...+.+.....||.+|-.|.
T Consensus 77 ~~~~~~~l~~~l~~~~~~~~~I~aic~G~ 105 (142)
T cd03132 77 ALAPSGRALHFVTEAFKHGKPIGAVGEGS 105 (142)
T ss_pred HHccChHHHHHHHHHHhcCCeEEEcCchH
Confidence 3344555556788999998874
No 233
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=35.78 E-value=60 Score=41.36 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=43.5
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhc-CCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-ccCCCcEEEEEcCCch
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYH-QEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGV 767 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~-~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d-~~~~~DlVIvLGGDGT 767 (904)
.++++||....-.......++.+.|.. ..++.+.+-.++.. .|....+... ... ...++|+||.||| |+
T Consensus 480 ~~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~~~~~~~v~~----np~~~~v~~~----~~~~~~~~~D~IIaiGG-GS 550 (862)
T PRK13805 480 KKRAFIVTDRFMVELGYVDKVTDVLKKRENGVEYEVFSEVEP----DPTLSTVRKG----AELMRSFKPDTIIALGG-GS 550 (862)
T ss_pred CCEEEEEECcchhhcchHHHHHHHHhcccCCCeEEEeCCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-ch
Confidence 478999986543333356678888852 34666654333211 1111111000 000 1247899999999 99
Q ss_pred HHHHHHhc
Q 002584 768 ILHASNLF 775 (904)
Q Consensus 768 lL~Aar~~ 775 (904)
.+-+++.+
T Consensus 551 viD~AK~i 558 (862)
T PRK13805 551 PMDAAKIM 558 (862)
T ss_pred HHHHHHHH
Confidence 99888765
No 234
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=35.64 E-value=1.3e+02 Score=34.37 Aligned_cols=81 Identities=16% Similarity=0.233 Sum_probs=49.9
Q ss_pred EEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHh----cC
Q 002584 270 CRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS----NS 345 (904)
Q Consensus 270 YRSGqpT~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~----ds 345 (904)
.+|-.++|+++..+...-=.-|||-|.+- |- + |-.+ ...-.|..+.+++|-+++. ..
T Consensus 110 ~vG~yl~p~~wn~~l~D~~~vviDtRN~Y-E~-----~---------iG~F----~gAv~p~~~tFrefP~~v~~~~~~~ 170 (308)
T COG1054 110 NVGTYLSPKDWNELLSDPDVVVIDTRNDY-EV-----A---------IGHF----EGAVEPDIETFREFPAWVEENLDLL 170 (308)
T ss_pred cccCccCHHHHHHHhcCCCeEEEEcCcce-eE-----e---------eeee----cCccCCChhhhhhhHHHHHHHHHhc
Confidence 35667899999877766448899999974 10 0 0111 1112344445555544443 23
Q ss_pred CCCcEEEeCcCCCChHHHHHHHHHH
Q 002584 346 SKKPLYLHSKEGVWRTYAMVSRWRQ 370 (904)
Q Consensus 346 ~~~PVLVHCtAGKDRTGaLvaLlr~ 370 (904)
.++||.+.||.|. |.--..++++.
T Consensus 171 ~~KkVvmyCTGGI-RCEKas~~m~~ 194 (308)
T COG1054 171 KDKKVVMYCTGGI-RCEKASAWMKE 194 (308)
T ss_pred cCCcEEEEcCCce-eehhhHHHHHH
Confidence 5679999999999 88865555543
No 235
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=35.20 E-value=2.5e+02 Score=30.60 Aligned_cols=81 Identities=10% Similarity=0.042 Sum_probs=52.4
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCC-cEEEeCc
Q 002584 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKK-PLYLHSK 355 (904)
Q Consensus 277 ~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~~-PVLVHCt 355 (904)
.+-++..++.|++..+++-....-.+.+.....+.+...|+..+.++=. .....|+++..+++.+....+. |+-+||.
T Consensus 115 ~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~~l~~H~H 193 (263)
T cd07943 115 EQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDS-AGAMLPDDVRERVRALREALDPTPVGFHGH 193 (263)
T ss_pred HHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCC-CCCcCHHHHHHHHHHHHHhCCCceEEEEec
Confidence 4456777888999999983322111112222334456678888877533 4567899999888887655454 8888887
Q ss_pred CCC
Q 002584 356 EGV 358 (904)
Q Consensus 356 AGK 358 (904)
--.
T Consensus 194 n~~ 196 (263)
T cd07943 194 NNL 196 (263)
T ss_pred CCc
Confidence 655
No 236
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=34.90 E-value=45 Score=37.40 Aligned_cols=103 Identities=17% Similarity=0.301 Sum_probs=70.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCCCccceeeeeccCCCCCCCcccceeehhhhHHHhhhcCCccccccccccccccccc
Q 002584 94 VEAYCRIFRAAERLHAALMDTLCNPLTGECTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSGRSSIMNAYRVA 173 (904)
Q Consensus 94 ~~~~cr~~~~a~~l~~a~~~~~~~~~~~ec~v~~~~~~~~~~~led~ii~~~~~~~~~ln~gr~~v~s~~~~~~~nf~~~ 173 (904)
.|-+|++|....+-.. +..||-- .||.|+| -|.+-.++++|+. =-...+|+.|..
T Consensus 148 ~del~~Lv~~va~~~~--a~~L~~s----------------Lgl~~k~---~d~V~~LI~~g~~---ieAv~fi~~f~L- 202 (290)
T PF07899_consen 148 EDELLKLVVSVARRKQ--APELCRS----------------LGLSDKM---PDIVEKLIKKGKQ---IEAVRFIYAFGL- 202 (290)
T ss_pred HHHHHHHHHHhcchHh--hHHHHHH----------------cCchhhh---HHHHHHHHHCCCc---cchHHHHHHHcC-
Confidence 4668888887776555 5566632 3677776 4567788999998 445667787764
Q ss_pred ccccccccCCCchhhhhhhhhhhhHHHHHHHhccCCCCcchhhHHHHHHHHHhh
Q 002584 174 DISMTEDQLPPLAIFRSEMKRCCESMHIALENYLTPEDVRSLDVWRKLQRLKNV 227 (904)
Q Consensus 174 ~~~~~~~~~p~l~l~r~~l~~~~~~l~~~l~~yl~p~~~~~l~v~rkLqr~~n~ 227 (904)
.|++||.||.+.-+++..........+==++ ..+.-..-++|.+++.+
T Consensus 203 -----~dkfpPv~lLk~yl~~~k~~~~~~~~~~~~~-~a~~ea~~kel~aL~~v 250 (290)
T PF07899_consen 203 -----VDKFPPVPLLKSYLEDSKKAAKRIRKKGNSS-EAQNEANEKELAALKSV 250 (290)
T ss_pred -----CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHH
Confidence 6889999999999998877776655543322 23334445566666665
No 237
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=34.77 E-value=27 Score=39.47 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=44.1
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHHH
Q 002584 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (904)
Q Consensus 691 k~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL~ 770 (904)
++++||.-+.-.......++...|.+ .++++.+...+.. .|....+.... ..-...++|+||.+|| |+.+-
T Consensus 22 gr~lvVt~~~~~~~~~~~~v~~~L~~-~~i~~~~~~~~~~----~p~~~~v~~~~---~~~~~~~~D~IIaiGG-GS~~D 92 (366)
T PF00465_consen 22 GRVLVVTDPSLSKSGLVDRVLDALEE-AGIEVQVFDGVGP----NPTLEDVDEAA---EQARKFGADCIIAIGG-GSVMD 92 (366)
T ss_dssp TEEEEEEEHHHHHHTHHHHHHHHHHH-TTCEEEEEEEESS----S-BHHHHHHHH---HHHHHTTSSEEEEEES-HHHHH
T ss_pred CCEEEEECchHHhCccHHHHHHHHhh-CceEEEEEecCCC----CCcHHHHHHHH---HHHHhcCCCEEEEcCC-CCcCc
Confidence 48999986622233357888888854 5777765433211 11110000000 0001247899999999 99999
Q ss_pred HHHhcC
Q 002584 771 ASNLFR 776 (904)
Q Consensus 771 Aar~~~ 776 (904)
+++.+.
T Consensus 93 ~aK~va 98 (366)
T PF00465_consen 93 AAKAVA 98 (366)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888653
No 238
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=33.41 E-value=58 Score=35.67 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHhcCCCCcEEEeCcCCCChHHHHHHHHHHHcCCC
Q 002584 331 TMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (904)
Q Consensus 331 s~e~I~afleil~ds~~~PVLVHCtAGKDRTGaLvaLlr~~lGV~ 375 (904)
+++.+++++.-.--..++||+++|..|. |+..++.++. .+|..
T Consensus 215 ~~~~l~~~~~~~g~~~~~~ii~yC~~G~-~A~~~~~~l~-~~G~~ 257 (281)
T PRK11493 215 TTDELDAIFFGRGVSFDRPIIASCGSGV-TAAVVVLALA-TLDVP 257 (281)
T ss_pred CHHHHHHHHHhcCCCCCCCEEEECCcHH-HHHHHHHHHH-HcCCC
Confidence 3566665554321135679999999999 8876655554 56754
No 239
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=32.96 E-value=51 Score=37.71 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=41.6
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-ccCCCcEEEEEcCCchH
Q 002584 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (904)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d-~~~~~DlVIvLGGDGTl 768 (904)
.++++||....-.......++.+.|.+ .++++.+..++. ..|....+.. -.+. ...++|+||.||| |..
T Consensus 28 ~~~~livt~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~v~----~~p~~~~v~~----~~~~~~~~~~d~IIaiGG-Gsv 97 (377)
T cd08188 28 AKKVLLVSDPGVIKAGWVDRVIESLEE-AGLEYVVFSDVS----PNPRDEEVMA----GAELYLENGCDVIIAVGG-GSP 97 (377)
T ss_pred CCeEEEEeCcchhhCccHHHHHHHHHH-cCCeEEEeCCCC----CCCCHHHHHH----HHHHHHhcCCCEEEEeCC-chH
Confidence 378999987542222245667777753 466554432221 0111100000 0001 1357899999999 999
Q ss_pred HHHHHhc
Q 002584 769 LHASNLF 775 (904)
Q Consensus 769 L~Aar~~ 775 (904)
+-+++..
T Consensus 98 iD~AK~i 104 (377)
T cd08188 98 IDCAKGI 104 (377)
T ss_pred HHHHHHH
Confidence 9988654
No 240
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=32.73 E-value=3.2e+02 Score=29.63 Aligned_cols=78 Identities=8% Similarity=0.079 Sum_probs=48.1
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCcCCC
Q 002584 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 358 (904)
Q Consensus 280 La~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~~PVLVHCtAGK 358 (904)
++..++.|+...+++-....-.+.+.......+...|+..+.++=. .....|+++..++..+.+..+-|+-+||.--.
T Consensus 116 i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~ 193 (259)
T cd07939 116 VGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADT-VGILDPFTTYELIRRLRAATDLPLEFHAHNDL 193 (259)
T ss_pred HHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 4466778998888874433111212222233455678888877754 45667888888887765443467777776555
No 241
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=30.90 E-value=3e+02 Score=30.26 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=50.2
Q ss_pred hHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCC--CcEEEeCcC
Q 002584 279 GLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK--KPLYLHSKE 356 (904)
Q Consensus 279 DLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~--~PVLVHCtA 356 (904)
-++..+++|++..+++-....-.+.+.....+.+...|+..+.++=. ....+|+++..++..+....+ -|+-+||.-
T Consensus 114 ~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn 192 (266)
T cd07944 114 LIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDS-FGSMYPEDIKRIISLLRSNLDKDIKLGFHAHN 192 (266)
T ss_pred HHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecC-CCCCCHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 35666778999888875543111111122333456678888877754 456688999888887754433 688888875
Q ss_pred CC
Q 002584 357 GV 358 (904)
Q Consensus 357 GK 358 (904)
-.
T Consensus 193 ~~ 194 (266)
T cd07944 193 NL 194 (266)
T ss_pred Cc
Confidence 55
No 242
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=30.67 E-value=60 Score=31.74 Aligned_cols=77 Identities=14% Similarity=0.085 Sum_probs=49.9
Q ss_pred CEEEEEecCChhH-HHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHH
Q 002584 691 RTVLVLKKPGPAL-MEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (904)
Q Consensus 691 k~VlIv~K~~~~~-~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL 769 (904)
++|+|++-.+.+. .+....++++|.+.-|++|.++.--...+. ..+. ..|. ......+|.||+|=--|+.-
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~---~~g~-~~W~----~~~~~~ad~Vliv~S~~~~~ 72 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIA---RQGP-PRWM----ERQIREADKVLIVCSPGYKE 72 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccc---cCCH-HHHH----HHHHhcCCEEEEEeccchhH
Confidence 4799999988655 577899999997645999998753221111 1111 1111 12246789999999988876
Q ss_pred HHHHhc
Q 002584 770 HASNLF 775 (904)
Q Consensus 770 ~Aar~~ 775 (904)
..-...
T Consensus 73 ~~~~~~ 78 (150)
T PF08357_consen 73 RYDKKA 78 (150)
T ss_pred HHHHhh
Confidence 655554
No 243
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=30.33 E-value=90 Score=35.76 Aligned_cols=77 Identities=10% Similarity=0.126 Sum_probs=39.5
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchHHH
Q 002584 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (904)
Q Consensus 691 k~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTlL~ 770 (904)
++++||....-.-. ....+.+.|. ++.+.+-++... .|....+......-.+.-..+-|+||.+|| |.++-
T Consensus 20 ~r~lIVtD~~v~~l-~~~~l~~~L~---~~~~~~~~~~e~----~k~l~~v~~~~~~~~~~~~~r~d~iIaiGG-Gsv~D 90 (346)
T cd08196 20 ENDVFIVDANVAEL-YRDRLDLPLD---AAPVIAIDATEE----NKSLEAVSSVIESLRQNGARRNTHLVAIGG-GIIQD 90 (346)
T ss_pred CeEEEEECccHHHH-HHHHHHHHhc---CCeEEEeCCCCC----CCCHHHHHHHHHHHHHcCCCCCcEEEEECC-hHHHH
Confidence 67899988875333 5667777774 333333222110 111111100000000001123499999999 99998
Q ss_pred HHHhcC
Q 002584 771 ASNLFR 776 (904)
Q Consensus 771 Aar~~~ 776 (904)
++....
T Consensus 91 ~ak~vA 96 (346)
T cd08196 91 VTTFVA 96 (346)
T ss_pred HHHHHH
Confidence 887664
No 244
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=30.24 E-value=43 Score=34.20 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCch------HHHHHHhcCCCCCcEEEEeCCC
Q 002584 755 RVDFVACLGGDGV------ILHASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 755 ~~DlVIvLGGDGT------lL~Aar~~~~~~~PVLGIN~Gs 789 (904)
.+|.||..||-|. .+...+.+...++||+||-.|.
T Consensus 39 ~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~G~ 79 (178)
T cd01744 39 DPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGH 79 (178)
T ss_pred CCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECHHH
Confidence 5799999999764 3344555555679999999873
No 245
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=30.18 E-value=3.3e+02 Score=31.13 Aligned_cols=82 Identities=13% Similarity=0.042 Sum_probs=54.0
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCC--CcEEEe
Q 002584 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK--KPLYLH 353 (904)
Q Consensus 276 T~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~--~PVLVH 353 (904)
..+-+++.+++|.++.+++-....-.+.+.....+.++..|...+.+.=. .....|+++.+.+..+.+..+ -|+-||
T Consensus 116 ~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT-~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 194 (333)
T TIGR03217 116 SEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDS-AGAMLPDDVRDRVRALKAVLKPETQVGFH 194 (333)
T ss_pred HHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccC-CCCCCHHHHHHHHHHHHHhCCCCceEEEE
Confidence 34567888899999999986543111112223344566778887766544 456678888888887754433 688888
Q ss_pred CcCCC
Q 002584 354 SKEGV 358 (904)
Q Consensus 354 CtAGK 358 (904)
|....
T Consensus 195 ~Hnnl 199 (333)
T TIGR03217 195 AHHNL 199 (333)
T ss_pred eCCCC
Confidence 87666
No 246
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=30.17 E-value=20 Score=36.33 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=28.2
Q ss_pred cCCCcEEEEEcCCc------hHHHHHHhcCCCCCcEEEEeCCC
Q 002584 753 HERVDFVACLGGDG------VILHASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 753 ~~~~DlVIvLGGDG------TlL~Aar~~~~~~~PVLGIN~Gs 789 (904)
..++|.||+.||=| ..+...+.+....+|||||-+|+
T Consensus 40 ~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~G~ 82 (192)
T PF00117_consen 40 LDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGICLGH 82 (192)
T ss_dssp TTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETHHH
T ss_pred hcCCCEEEECCcCCccccccccccccccccccceEEEEEeehh
Confidence 45789999999944 44456666666789999999885
No 247
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=29.61 E-value=1.2e+02 Score=32.76 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=27.8
Q ss_pred ccccCCCcEEEEEcCCchHHHHHHhcCCCCCcEEEEeC
Q 002584 750 SDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNL 787 (904)
Q Consensus 750 ~d~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~ 787 (904)
.+.-..+|+||+-||-+|+..++.. ++|++-|-.
T Consensus 245 ~~~m~~ad~vIs~~G~~t~~Ea~~~----g~P~l~ip~ 278 (318)
T PF13528_consen 245 AELMAAADLVISKGGYTTISEALAL----GKPALVIPR 278 (318)
T ss_pred HHHHHhCCEEEECCCHHHHHHHHHc----CCCEEEEeC
Confidence 3455779999999999999998776 679988764
No 248
>PRK07567 glutamine amidotransferase; Provisional
Probab=29.54 E-value=40 Score=36.50 Aligned_cols=36 Identities=11% Similarity=-0.061 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCchH------------------HHHHHhcCCCCCcEEEEeCCC
Q 002584 754 ERVDFVACLGGDGVI------------------LHASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 754 ~~~DlVIvLGGDGTl------------------L~Aar~~~~~~~PVLGIN~Gs 789 (904)
+.+|.||+.||-+.. ..+.+.+...++|||||-+|+
T Consensus 50 ~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~ 103 (242)
T PRK07567 50 DDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGV 103 (242)
T ss_pred hhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhH
Confidence 458999999996432 122333335689999999985
No 249
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=27.78 E-value=4.8e+02 Score=24.33 Aligned_cols=90 Identities=13% Similarity=0.257 Sum_probs=54.5
Q ss_pred CEEEEEecCChhHHH-HHHHHHHHHhcCCCeEEEEcC-ChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchH
Q 002584 691 RTVLVLKKPGPALME-EAKEVASFLYHQEKMNILVEP-DVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (904)
Q Consensus 691 k~VlIv~K~~~~~~~-~a~el~~~L~~~~gi~V~ve~-~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTl 768 (904)
++|+++.-.+-.... .+..+-++|.+ +|+++-++. .+.+ + +...+++|+||+-. +
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~-~gi~~~v~~~~~~e-~-----------------~~~~~~~D~iv~t~-~--- 59 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQS-HNIPVELIQCRVNE-I-----------------ETYMDGVHLICTTA-R--- 59 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHH-CCCeEEEEEecHHH-H-----------------hhhcCCCCEEEECC-c---
Confidence 379999998864433 35677777754 688766654 2211 1 11124579886533 1
Q ss_pred HHHHHhcCCCCCcEEEEeCCCCcccCCCCcccHHHHHHHHHcC
Q 002584 769 LHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYG 811 (904)
Q Consensus 769 L~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~il~G 811 (904)
+. ..+ .++|++-+ ++||+.++.+++++.+.+++.|
T Consensus 60 ~~--~~~--~~ip~~~~----~~llt~~~~~~~~e~i~~~l~~ 94 (94)
T PRK10310 60 VD--RSF--GDIPLVHG----MPFVSGVGIEALQNKILTILQG 94 (94)
T ss_pred cc--ccc--CCCCEEEE----eecccccCHHHHHHHHHHHHcC
Confidence 11 111 14775432 3599999999998888887765
No 250
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=27.02 E-value=2.3e+02 Score=31.36 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=34.6
Q ss_pred cCCCcEEEEEcCCch-------HHHHHHhcCCCCCcEEEEeCC-----CCcccCCCCc
Q 002584 753 HERVDFVACLGGDGV-------ILHASNLFRGAVPPVISFNLG-----SLGFLTSHPF 798 (904)
Q Consensus 753 ~~~~DlVIvLGGDGT-------lL~Aar~~~~~~~PVLGIN~G-----sLGFLt~~~~ 798 (904)
.+.+|+||+-||+|. ++...+.+.....+|.+|..| ..|.|.....
T Consensus 73 ~~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~ 130 (322)
T PRK09393 73 LDRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAAAGLLDGRRA 130 (322)
T ss_pred cCCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhccCCCCCee
Confidence 357899999999774 566666666678899999987 6788876544
No 251
>PRK06186 hypothetical protein; Validated
Probab=26.00 E-value=45 Score=36.34 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=30.4
Q ss_pred cCCCcEEEEEcCCch-----HHHHHHhcCCCCCcEEEEeCC
Q 002584 753 HERVDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLG 788 (904)
Q Consensus 753 ~~~~DlVIvLGGDGT-----lL~Aar~~~~~~~PVLGIN~G 788 (904)
.+.+|-|++.||=|. .+.|++.....++|+|||-+|
T Consensus 51 l~~~dgilvpgGfg~rg~~Gki~ai~~Are~~iP~LGIClG 91 (229)
T PRK06186 51 LAGFDGIWCVPGSPYRNDDGALTAIRFARENGIPFLGTCGG 91 (229)
T ss_pred HhhCCeeEeCCCCCcccHhHHHHHHHHHHHcCCCeEeechh
Confidence 356899999999664 577888888899999999988
No 252
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=25.87 E-value=64 Score=36.31 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=27.3
Q ss_pred cccCCCcEEEEEcCCchHHHHHHhcCCCCCcEEEEeC
Q 002584 751 DLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNL 787 (904)
Q Consensus 751 d~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~ 787 (904)
++...+|++|+-||-||++.|+.. ++|++.+-.
T Consensus 287 ~ll~~~~~~I~hgG~~t~~Eal~~----G~P~v~~p~ 319 (392)
T TIGR01426 287 EILKKADAFITHGGMNSTMEALFN----GVPMVAVPQ 319 (392)
T ss_pred HHHhhCCEEEECCCchHHHHHHHh----CCCEEecCC
Confidence 455678999999999999998776 689988754
No 253
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=25.61 E-value=4.5e+02 Score=30.44 Aligned_cols=79 Identities=6% Similarity=0.057 Sum_probs=51.6
Q ss_pred hHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCcCCC
Q 002584 279 GLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 358 (904)
Q Consensus 279 DLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~~PVLVHCtAGK 358 (904)
-++..++.|++..++.-....-++.+.......+...|+..+.++=. ....+|+++..++..+.+..+-|+-+||.--.
T Consensus 121 ~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT-~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~ 199 (378)
T PRK11858 121 AVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDT-VGILDPFTMYELVKELVEAVDIPIEVHCHNDF 199 (378)
T ss_pred HHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCc
Confidence 35567778999888763322112222223334556789998888844 45678888888888775444678889888665
No 254
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=25.28 E-value=4.3e+02 Score=30.23 Aligned_cols=82 Identities=12% Similarity=0.033 Sum_probs=52.9
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCC--CCcEEEe
Q 002584 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSS--KKPLYLH 353 (904)
Q Consensus 276 T~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~--~~PVLVH 353 (904)
..+-+++.+++|.++.+++-....-.+.+.....+.++..|...+.+.=. .....|+++..++..+.+.. +-|+=||
T Consensus 117 ~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT-~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 195 (337)
T PRK08195 117 SEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDS-AGALLPEDVRDRVRALRAALKPDTQVGFH 195 (337)
T ss_pred HHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCC-CCCCCHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 34557788889999999986553111112122334556778887766543 45667889988888775443 5678887
Q ss_pred CcCCC
Q 002584 354 SKEGV 358 (904)
Q Consensus 354 CtAGK 358 (904)
|.-..
T Consensus 196 ~Hnnl 200 (337)
T PRK08195 196 GHNNL 200 (337)
T ss_pred eCCCc
Confidence 77655
No 255
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=25.03 E-value=96 Score=34.80 Aligned_cols=58 Identities=21% Similarity=0.140 Sum_probs=39.6
Q ss_pred cccccCCCcEEEEEcCCchHHHHHHhcCCCCCcEEEEeCC-----------C--CcccCC---CCcccHHHHHHHHHc
Q 002584 749 TSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLG-----------S--LGFLTS---HPFEDYRQDLRQVIY 810 (904)
Q Consensus 749 ~~d~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~G-----------s--LGFLt~---~~~ed~~~~L~~il~ 810 (904)
..++-..+|++|+-||=||+..++.. ++|++.+-.+ . .|.... ++.+++.+++++++.
T Consensus 298 ~~~ll~~~d~~I~hgG~~t~~eal~~----GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~ 371 (401)
T cd03784 298 HDWLLPRCAAVVHHGGAGTTAAALRA----GVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLD 371 (401)
T ss_pred HHHHhhhhheeeecCCchhHHHHHHc----CCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhC
Confidence 34556779999999999999998766 6888888432 1 232221 245666667776665
No 256
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=24.87 E-value=1.4e+02 Score=34.78 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=26.5
Q ss_pred CCCcEEEEEcCCchHHHHHHhcC---CCCCcEEEEeCC
Q 002584 754 ERVDFVACLGGDGVILHASNLFR---GAVPPVISFNLG 788 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~---~~~~PVLGIN~G 788 (904)
++.|+||.||| |.++-++.... ..++|++-|.+-
T Consensus 98 ~r~~~IIalGG-G~v~D~ag~vA~~~~rGip~I~IPTT 134 (369)
T cd08198 98 DRHSYVIAIGG-GAVLDAVGYAAATAHRGVRLIRIPTT 134 (369)
T ss_pred CcCcEEEEECC-hHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 34569999999 99999887664 457898888753
No 257
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=24.78 E-value=3e+02 Score=27.42 Aligned_cols=22 Identities=5% Similarity=-0.016 Sum_probs=15.2
Q ss_pred CCCcEEEeCcCCCChHHHHHHHH
Q 002584 346 SKKPLYLHSKEGVWRTYAMVSRW 368 (904)
Q Consensus 346 ~~~PVLVHCtAGKDRTGaLvaLl 368 (904)
.+.|++|+|..|. ++..++..+
T Consensus 48 ~~~~vVv~c~~g~-~a~~aa~~L 69 (145)
T cd01535 48 AAERYVLTCGSSL-LARFAAADL 69 (145)
T ss_pred CCCCEEEEeCCCh-HHHHHHHHH
Confidence 4679999999975 555444443
No 258
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=24.71 E-value=2.4e+02 Score=28.58 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=32.5
Q ss_pred cCCCcEEEEEcCC---------chHHHHHHhcCCCCCcEEEEeCCCCcc
Q 002584 753 HERVDFVACLGGD---------GVILHASNLFRGAVPPVISFNLGSLGF 792 (904)
Q Consensus 753 ~~~~DlVIvLGGD---------GTlL~Aar~~~~~~~PVLGIN~GsLGF 792 (904)
.+.+|.+++-||+ -.++..++.|...+.||.+|-.|..-+
T Consensus 64 ~~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L 112 (188)
T COG0693 64 AADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVL 112 (188)
T ss_pred HhHCCEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHH
Confidence 3689999999994 458888888888899999998876443
No 259
>PRK08250 glutamine amidotransferase; Provisional
Probab=24.70 E-value=62 Score=34.87 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCchH---------------HHHHHhcCCCCCcEEEEeCCC
Q 002584 754 ERVDFVACLGGDGVI---------------LHASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 754 ~~~DlVIvLGGDGTl---------------L~Aar~~~~~~~PVLGIN~Gs 789 (904)
.++|.||+.||=.+. ....+.+...++||+||-.|.
T Consensus 44 ~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 94 (235)
T PRK08250 44 DGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGA 94 (235)
T ss_pred cccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhH
Confidence 468999999994431 223344445789999999874
No 260
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=24.36 E-value=94 Score=35.97 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=44.7
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccc-cCCCcEEEEEcCCchH-
Q 002584 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI- 768 (904)
Q Consensus 691 k~VlIv~K~~~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~-~~~~DlVIvLGGDGTl- 768 (904)
++|+||-- +- ...++++|.+ .|..+.+-+.-.. .+++ ..++|.||.-||.|..
T Consensus 178 ~~I~viD~-G~-----k~nivr~L~~-~G~~v~vvp~~~~------------------~~~i~~~~~DGIvLSgGPgdp~ 232 (360)
T PRK12564 178 YKVVAIDF-GV-----KRNILRELAE-RGCRVTVVPATTT------------------AEEILALNPDGVFLSNGPGDPA 232 (360)
T ss_pred CEEEEEeC-Cc-----HHHHHHHHHH-CCCEEEEEeCCCC------------------HHHHHhcCCCEEEEeCCCCChH
Confidence 57777643 21 2358888865 4777665442110 0111 1257999999997653
Q ss_pred -----HHHHHhcCCCCCcEEEEeCCC
Q 002584 769 -----LHASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 769 -----L~Aar~~~~~~~PVLGIN~Gs 789 (904)
+..++.+...++||+||-+|+
T Consensus 233 ~~~~~~~~i~~~~~~~~PilGIClG~ 258 (360)
T PRK12564 233 ALDYAIEMIRELLEKKIPIFGICLGH 258 (360)
T ss_pred HHHHHHHHHHHHHHcCCeEEEECHHH
Confidence 344555555679999999884
No 261
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=24.14 E-value=7e+02 Score=31.10 Aligned_cols=91 Identities=11% Similarity=-0.014 Sum_probs=54.7
Q ss_pred ccEEEcCC-C-----CHhhHHHHHHcCCcEEEE--cCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHH
Q 002584 267 VTFCRGGQ-V-----TEEGLKWLMEKGYKTIVD--IRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKF 338 (904)
Q Consensus 267 ~~LYRSGq-p-----T~eDLa~L~elGIKTVID--LRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~af 338 (904)
..+||-.. + ....++..++.|...... +.....-...+.....+.+...|+..+.|.=. ....++.++.++
T Consensus 110 idv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDt-aG~l~P~~v~~l 188 (596)
T PRK14042 110 VDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDM-AGLLTPTVTVEL 188 (596)
T ss_pred CCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCc-ccCCCHHHHHHH
Confidence 35667662 2 234577888888877766 44332111112223344566788887777643 345678888888
Q ss_pred HHHHhcCCCCcEEEeCcCCC
Q 002584 339 ASLVSNSSKKPLYLHSKEGV 358 (904)
Q Consensus 339 leil~ds~~~PVLVHCtAGK 358 (904)
+..+.+..+-|+-+||+.-.
T Consensus 189 v~alk~~~~ipi~~H~Hnt~ 208 (596)
T PRK14042 189 YAGLKQATGLPVHLHSHSTS 208 (596)
T ss_pred HHHHHhhcCCEEEEEeCCCC
Confidence 87776555678888776544
No 262
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=24.13 E-value=33 Score=33.92 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=23.6
Q ss_pred ccccCCCcEEEEEcCCchHHHHHHhcCCCCCcEEEEe
Q 002584 750 SDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFN 786 (904)
Q Consensus 750 ~d~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN 786 (904)
.++-..+|+||+-||=||+..++.. ++|.+-|-
T Consensus 67 ~~~m~~aDlvIs~aG~~Ti~E~l~~----g~P~I~ip 99 (167)
T PF04101_consen 67 AELMAAADLVISHAGAGTIAEALAL----GKPAIVIP 99 (167)
T ss_dssp HHHHHHHSEEEECS-CHHHHHHHHC----T--EEEE-
T ss_pred HHHHHHcCEEEeCCCccHHHHHHHc----CCCeeccC
Confidence 3455679999999999999998876 57877663
No 263
>PRK09065 glutamine amidotransferase; Provisional
Probab=24.10 E-value=59 Score=35.02 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCchH----------HHHHHhcCCCCCcEEEEeCCC
Q 002584 754 ERVDFVACLGGDGVI----------LHASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 754 ~~~DlVIvLGGDGTl----------L~Aar~~~~~~~PVLGIN~Gs 789 (904)
..+|.||+.||=.+. +...+.+...++|||||-+|+
T Consensus 53 ~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~ 98 (237)
T PRK09065 53 DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGH 98 (237)
T ss_pred hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhH
Confidence 457999999997652 333344444689999999985
No 264
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=23.76 E-value=2.7e+02 Score=33.32 Aligned_cols=96 Identities=23% Similarity=0.375 Sum_probs=57.4
Q ss_pred ccCCCEEEEEecCChhHHHHHHHHHHHHhc-CCCeEEEEcCChh-------hhhhcCCCCccceeeeccCcccccCCCcE
Q 002584 687 KTTPRTVLVLKKPGPALMEEAKEVASFLYH-QEKMNILVEPDVH-------DIFARIPGFGFVQTFYLQDTSDLHERVDF 758 (904)
Q Consensus 687 ~~~pk~VlIv~K~~~~~~~~a~el~~~L~~-~~gi~V~ve~~v~-------~~l~~~~~~~~~~~~~~~~~~d~~~~~Dl 758 (904)
...|++|+||+-+...+..- |++-+.+ .+.++|++-|..- ++...+..+ +-...+|+
T Consensus 132 P~~p~~IGVITS~tgAairD---Il~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~a------------n~~~~~Dv 196 (440)
T COG1570 132 PFFPKKIGVITSPTGAALRD---ILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERA------------NQRGDVDV 196 (440)
T ss_pred CCCCCeEEEEcCCchHHHHH---HHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHh------------hccCCCCE
Confidence 55699999999998766443 3333333 3668888766432 111111111 11234899
Q ss_pred EEEEcCCchH--HH------HHHhcCCCCCcEEEEeCCCCcccCCCCcccH
Q 002584 759 VACLGGDGVI--LH------ASNLFRGAVPPVISFNLGSLGFLTSHPFEDY 801 (904)
Q Consensus 759 VIvLGGDGTl--L~------Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~ 801 (904)
+|+-=|=|.+ |. .+|.+..+.+||++ -+|-=|++...|+
T Consensus 197 lIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvIS----AVGHEtD~tL~Df 243 (440)
T COG1570 197 LIVARGGGSIEDLWAFNDEIVARAIAASRIPVIS----AVGHETDFTLADF 243 (440)
T ss_pred EEEecCcchHHHHhccChHHHHHHHHhCCCCeEe----ecccCCCccHHHh
Confidence 9998887887 22 44556677899987 3444555554443
No 265
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=23.04 E-value=83 Score=25.38 Aligned_cols=38 Identities=24% Similarity=0.202 Sum_probs=27.0
Q ss_pred cCCCcEEEEEcCCchHHH---------HHHhcCCCCCcEEEEeCCCC
Q 002584 753 HERVDFVACLGGDGVILH---------ASNLFRGAVPPVISFNLGSL 790 (904)
Q Consensus 753 ~~~~DlVIvLGGDGTlL~---------Aar~~~~~~~PVLGIN~GsL 790 (904)
..++|.+|+.||.++... ....+.....|++|+..|..
T Consensus 44 ~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~ 90 (92)
T cd03128 44 LDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQ 90 (92)
T ss_pred cccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccc
Confidence 457899999999887733 23333345689999988753
No 266
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=23.03 E-value=1.8e+02 Score=35.76 Aligned_cols=67 Identities=28% Similarity=0.356 Sum_probs=38.5
Q ss_pred EEEEEcCCchH---HHHHHhcCCC-CCcE--EEEeCC-----CCcccCCCCcccHHHHHHHHHcCCCCCCceeeeEEEEE
Q 002584 758 FVACLGGDGVI---LHASNLFRGA-VPPV--ISFNLG-----SLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRL 826 (904)
Q Consensus 758 lVIvLGGDGTl---L~Aar~~~~~-~~PV--LGIN~G-----sLGFLt~~~~ed~~~~L~~il~G~y~i~g~~i~~R~rL 826 (904)
-|++-|||||+ |.+...+.-. .||| |...+| .||.=--+.-+-+-+.|..+.+|. +.-..|-+|
T Consensus 419 RILaCGGDGTVGWiLStLD~L~l~p~PPvailPLGTGNDLARtlnWGGgytDEPvSkil~~ve~gt-----vVqLDRW~l 493 (1004)
T KOG0782|consen 419 RILACGGDGTVGWILSTLDNLNLPPYPPVAILPLGTGNDLARTLNWGGGYTDEPVSKILQAVEHGT-----VVQLDRWRL 493 (1004)
T ss_pred EEEEecCCCceeehhhhhhhcCCCCCCCeeEeecCCcchHHHhcccCCCcCcchHHHHHHHHhcCc-----EEeeeeeee
Confidence 36678999996 5555554433 4454 444444 233333333445566777888886 223457777
Q ss_pred EEE
Q 002584 827 CCE 829 (904)
Q Consensus 827 ~~~ 829 (904)
.++
T Consensus 494 hvE 496 (1004)
T KOG0782|consen 494 HVE 496 (1004)
T ss_pred ccc
Confidence 665
No 267
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=23.00 E-value=94 Score=33.94 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=38.1
Q ss_pred HHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCCchH-------------------
Q 002584 708 KEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI------------------- 768 (904)
Q Consensus 708 ~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGDGTl------------------- 768 (904)
...++.+.+..++.|++.....+. ...++..+.+|-||..||...+
T Consensus 29 ~~y~~~i~~aGg~pv~lp~~~~~~---------------~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD 93 (254)
T PRK11366 29 EKYLNAIIHAGGLPIALPHALAEP---------------SLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRD 93 (254)
T ss_pred HHHHHHHHHCCCEEEEecCCCCCH---------------HHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHH
Confidence 345566666678888765321100 0011223457888888873222
Q ss_pred ---HHHHHhcCCCCCcEEEEeCCC
Q 002584 769 ---LHASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 769 ---L~Aar~~~~~~~PVLGIN~Gs 789 (904)
+...+.+...++|||||-.|.
T Consensus 94 ~~e~~li~~a~~~~~PILGICrG~ 117 (254)
T PRK11366 94 LLSMALINAALERRIPIFAICRGL 117 (254)
T ss_pred HHHHHHHHHHHHCCCCEEEECHhH
Confidence 233444445689999999883
No 268
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=22.70 E-value=1.9e+02 Score=25.62 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=37.1
Q ss_pred CCEEEEEecCC--hhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccccCCCcEEEEEcCC
Q 002584 690 PRTVLVLKKPG--PALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (904)
Q Consensus 690 pk~VlIv~K~~--~~~~~~a~el~~~L~~~~gi~V~ve~~v~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVIvLGGD 765 (904)
|..|.|+.-.. .+....+.+++..|.. .|+.|.++..-. .++. .+ ...-..++.++|++|.+
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~-~g~~v~~d~~~~-~l~k--------~i----~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQA-AGVDVLLDDRNE-RPGV--------KF----ADADLIGIPYRIVVGKK 64 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHH-CCCEEEEECCCC-Cccc--------ch----hHHHhcCCCEEEEECCc
Confidence 45677775444 2566778889988864 588888765421 1110 00 01123568999999943
No 269
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=22.54 E-value=5.6e+02 Score=27.95 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=47.4
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCC---CcEEEeCcC
Q 002584 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK---KPLYLHSKE 356 (904)
Q Consensus 280 La~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~---~PVLVHCtA 356 (904)
++..+++|++..+++-....-.+.+.....+.+...|+..+.++=. ....+|+++..+++.+.+..+ -|+-+||.-
T Consensus 120 i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn 198 (268)
T cd07940 120 VEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDT-VGYLTPEEFGELIKKLKENVPNIKVPISVHCHN 198 (268)
T ss_pred HHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCC-CCCCCHHHHHHHHHHHHHhCCCCceeEEEEecC
Confidence 4566778998877764332111112122233455678887777644 445678888888887764433 577777776
Q ss_pred CC
Q 002584 357 GV 358 (904)
Q Consensus 357 GK 358 (904)
-.
T Consensus 199 ~~ 200 (268)
T cd07940 199 DL 200 (268)
T ss_pred Cc
Confidence 55
No 270
>PRK09389 (R)-citramalate synthase; Provisional
Probab=22.18 E-value=5.3e+02 Score=31.14 Aligned_cols=78 Identities=13% Similarity=0.082 Sum_probs=51.7
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCcCCC
Q 002584 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 358 (904)
Q Consensus 280 La~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~~PVLVHCtAGK 358 (904)
+++.++.|++..+++-....-++.+.......+...|...+.+|=. .....|.++..+++.+.+..+-|+=+||.--.
T Consensus 120 v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT-vG~~~P~~~~~lv~~l~~~~~v~l~~H~HND~ 197 (488)
T PRK09389 120 VEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCDT-VGILTPEKTYELFKRLSELVKGPVSIHCHNDF 197 (488)
T ss_pred HHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecC-CCCcCHHHHHHHHHHHHhhcCCeEEEEecCCc
Confidence 5667788998888874332112223222334556789999988865 45667888887777765545578899998665
No 271
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=21.80 E-value=21 Score=32.97 Aligned_cols=18 Identities=50% Similarity=1.053 Sum_probs=13.1
Q ss_pred CCCCCCcc----------CCCCCchHHH
Q 002584 77 DPSQLPWI----------GPVPGDIAEV 94 (904)
Q Consensus 77 ~~~~~~~~----------~~~~~~~~~~ 94 (904)
.+.||||| |-.||||.++
T Consensus 36 ~~~qLPkI~~~DPva~~lgak~GdvVkI 63 (80)
T COG2012 36 EPEQLPKIKASDPVAKALGAKPGDVVKI 63 (80)
T ss_pred CHHHCCcccccChhHHHccCCCCcEEEE
Confidence 35688886 7789997653
No 272
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=21.61 E-value=6.1e+02 Score=29.16 Aligned_cols=78 Identities=8% Similarity=0.101 Sum_probs=49.9
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCcCCC
Q 002584 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 358 (904)
Q Consensus 280 La~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~~PVLVHCtAGK 358 (904)
++..++.|++..+++-....-++.+.......+...|...+.++=. ....+|+++..++..+.+..+-|+=+||.--.
T Consensus 119 i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~ 196 (365)
T TIGR02660 119 VSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADT-VGILDPFSTYELVRALRQAVDLPLEMHAHNDL 196 (365)
T ss_pred HHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEccc-CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 5566778998877764332112222222334456689988888755 44667888888888775544568888887555
No 273
>PRK10586 putative oxidoreductase; Provisional
Probab=21.49 E-value=94 Score=35.72 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=28.1
Q ss_pred CCCcEEEEEcCCchHHHHHHhcCC-CCCcEEEEeC
Q 002584 754 ERVDFVACLGGDGVILHASNLFRG-AVPPVISFNL 787 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~Aar~~~~-~~~PVLGIN~ 787 (904)
.++|+||.+|| |..+-+++.... ..+|++.|.+
T Consensus 85 ~~~d~iiavGG-Gs~iD~aK~~a~~~~~p~i~vPT 118 (362)
T PRK10586 85 DDRQVVIGVGG-GALLDTAKALARRLGLPFVAIPT 118 (362)
T ss_pred cCCCEEEEecC-cHHHHHHHHHHhhcCCCEEEEeC
Confidence 46899999999 999999997643 4789999986
No 274
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=21.35 E-value=62 Score=33.64 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCchHH----------HHHHhcCCCCCcEEEEeCCC
Q 002584 755 RVDFVACLGGDGVIL----------HASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 755 ~~DlVIvLGGDGTlL----------~Aar~~~~~~~PVLGIN~Gs 789 (904)
++|.||.-||-++.. ...+.+...++||+||-.|.
T Consensus 43 ~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~ 87 (200)
T PRK13527 43 DCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGL 87 (200)
T ss_pred cCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHH
Confidence 589999999988763 23333334688999999885
No 275
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=21.33 E-value=6.8e+02 Score=28.84 Aligned_cols=80 Identities=14% Similarity=0.159 Sum_probs=51.6
Q ss_pred hhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCcCC
Q 002584 278 EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEG 357 (904)
Q Consensus 278 eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhIPV~d~~~Ps~e~I~afleil~ds~~~PVLVHCtAG 357 (904)
+-++..++.|++..+++-....-++.+.....+.+...|+..+.++=. ....+|+++..+++.+.+..+-|+-+||.--
T Consensus 116 ~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT-~G~~~P~~v~~li~~l~~~~~~~l~~H~Hnd 194 (363)
T TIGR02090 116 EAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADT-VGVLTPQKMEELIKKLKENVKLPISVHCHND 194 (363)
T ss_pred HHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCC-CCccCHHHHHHHHHHHhcccCceEEEEecCC
Confidence 345667788999888874332111222222334456678888887755 4567889998888887655456788888765
Q ss_pred C
Q 002584 358 V 358 (904)
Q Consensus 358 K 358 (904)
.
T Consensus 195 ~ 195 (363)
T TIGR02090 195 F 195 (363)
T ss_pred C
Confidence 5
No 276
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=21.18 E-value=51 Score=33.24 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCchHHH-----HHHhcCCCCCcEEEEeCCC
Q 002584 754 ERVDFVACLGGDGVILH-----ASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 754 ~~~DlVIvLGGDGTlL~-----Aar~~~~~~~PVLGIN~Gs 789 (904)
.++|.||.-||.+.... ..+.+....+|||||-+|.
T Consensus 40 ~~~dgvIl~Gg~~~~~~~~~~~~~~~~~~~~~PilGIC~G~ 80 (181)
T cd01742 40 KNPKGIILSGGPSSVYEEDAPRVDPEIFELGVPVLGICYGM 80 (181)
T ss_pred cCCCEEEECCCcccccccccchhhHHHHhcCCCEEEEcHHH
Confidence 46899999999765422 2344445689999999884
No 277
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=21.05 E-value=3.3e+02 Score=29.72 Aligned_cols=95 Identities=11% Similarity=0.105 Sum_probs=62.3
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEE---ecCCCC---CCCHHHHHHHHHHHhcCCCCcE
Q 002584 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKI---PVEVRT---APTMEQVEKFASLVSNSSKKPL 350 (904)
Q Consensus 277 ~eDLa~L~elGIKTVIDLRsee~e~~~~~a~e~~~~e~~GI~yIhI---PV~d~~---~Ps~e~I~afleil~ds~~~PV 350 (904)
.+=++.|+.+|+|.|-=+.+-. +... .....+++..|++.+++ .+.+.. ..+++.+.+++.-+.......|
T Consensus 109 ~A~~~AL~alg~~RIalvTPY~--~~v~-~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAi 185 (239)
T TIGR02990 109 SAAVDGLAALGVRRISLLTPYT--PETS-RPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADAL 185 (239)
T ss_pred HHHHHHHHHcCCCEEEEECCCc--HHHH-HHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEE
Confidence 3447889999999999998864 1111 34667889999998876 343222 2457777776665544445678
Q ss_pred EEeCcCCCChHHHHHHHHHHHcCCCH
Q 002584 351 YLHSKEGVWRTYAMVSRWRQYMARCA 376 (904)
Q Consensus 351 LVHCtAGKDRTGaLvaLlr~~lGV~~ 376 (904)
++-|+. . ||--++.-+..-+|.|.
T Consensus 186 fisCTn-L-rt~~vi~~lE~~lGkPV 209 (239)
T TIGR02990 186 FLSCTA-L-RAATCAQRIEQAIGKPV 209 (239)
T ss_pred EEeCCC-c-hhHHHHHHHHHHHCCCE
Confidence 888874 4 67766655544467554
No 278
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=20.67 E-value=61 Score=33.17 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=24.9
Q ss_pred CcEEEEEcCCchH-----HHHHHhcCCCCCcEEEEeCCC
Q 002584 756 VDFVACLGGDGVI-----LHASNLFRGAVPPVISFNLGS 789 (904)
Q Consensus 756 ~DlVIvLGGDGTl-----L~Aar~~~~~~~PVLGIN~Gs 789 (904)
+|.||..||.+.. ....+.+...++|||||-+|.
T Consensus 42 ~~glii~Gg~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 80 (188)
T TIGR00888 42 PKGIILSGGPSSVYAENAPRADEKIFELGVPVLGICYGM 80 (188)
T ss_pred CCEEEECCCCCCcCcCCchHHHHHHHhCCCCEEEECHHH
Confidence 4689999987653 344555556789999999884
Done!