Query 002584
Match_columns 904
No_of_seqs 380 out of 2718
Neff 4.5
Searched_HMMs 29240
Date Tue Mar 26 15:48:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002584.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1304-1308//hhsearch_pdb/002584hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfn_A NAD kinase; structural 1.0 1 1 407.1 19.5 223 670-902 20-274 (365)
2 3afo_A NADH kinase POS5; alpha 1.0 1 1 380.4 18.6 238 659-902 10-256 (388)
3 1z0s_A Probable inorganic poly 1.0 1 1 319.5 15.4 177 683-901 19-199 (278)
4 1u0t_A Inorganic polyphosphate 1.0 1 1 300.1 16.5 204 689-902 3-215 (307)
5 2an1_A Putative kinase; struct 1.0 1 1 285.7 17.5 198 690-902 5-203 (292)
6 2i2c_A Probable inorganic poly 1.0 1 1 277.4 21.2 172 692-902 2-176 (272)
7 1yt5_A Inorganic polyphosphate 1.0 1 1 269.5 16.8 172 692-902 2-175 (258)
8 1ywf_A Phosphotyrosine protein 1.0 1 1 227.3 13.9 185 240-438 24-294 (296)
9 1xri_A AT1G05000; structural g 1.0 1 1 158.2 14.1 127 244-389 4-134 (151)
10 2f46_A Hypothetical protein; s 1.0 1 1 147.3 15.4 130 246-393 15-147 (156)
No 1
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=407.07 Aligned_cols=223 Identities=46% Similarity=0.781 Sum_probs=187.6
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCEEEEEECCCH-HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH--CCCCCCCCE---E
Q ss_conf 87544698145672013469979999824992-58999999999983089849999477035662--289986311---2
Q 002584 670 SSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFA--RIPGFGFVQ---T 743 (904)
Q Consensus 670 s~~~~~~ps~q~~~l~w~~~pk~VlIV~K~~~-~~~e~a~el~~~L~~~~gi~V~ve~~~~~~l~--~~~~~~~~~---~ 743 (904)
.-+++..|++ |+|+|.++||+|+||+|+++ .+.+.++++++||.+ ++++|++|+.+++.+. ....+.... .
T Consensus 20 ~~~~~~~~~~--~~l~w~~~~k~I~iv~K~~~~~~~~~~~~l~~~L~~-~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~ 96 (365)
T 3pfn_A 20 TIMHIQDPAS--QRLTWNKSPKSVLVIKKMRDASLLQPFKELCTHLME-ENMIVYVEKKVLEDPAIASDESFGAVKKKFC 96 (365)
T ss_dssp TEEEEECTTT--CBEEESSCCCEEEEEECTTCGGGHHHHHHHHHHHHH-TSCEEEEEHHHHHSHHHHHCSTTHHHHHHCE
T ss_pred HCEEECCCCC--CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH-CCCEEEEEHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 2106438664--432068789889999517987899999999999987-8999999667844220022334432222221
Q ss_pred EECCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 31157443367875999990872589997731799994999808997556888910199999999907998875146677
Q 002584 744 FYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLR 823 (904)
Q Consensus 744 ~~~~~~~d~~~~~DlVI~LGGDGTiL~Aar~~~~~~~PVLGIN~GsLGFLt~~~~e~~~~~L~~il~G~~~i~~~~i~~R 823 (904)
.+..+.+++.+.+|+||+||||||+|+|+|++++.++||||||+|+||||++++++++++.|+++++|+|. ++.|
T Consensus 97 ~~~~~~~~~~~~~DlvI~lGGDGT~L~aa~~~~~~~~PvlGiN~G~LGFLt~~~~~~~~~~l~~vl~g~~~-----v~~R 171 (365)
T 3pfn_A 97 TFREDYDDISNQIDFIICLGGDGTLLYASSLFQGSVPPVMAFHLGSLGFLTPFSFENFQSQVTQVIEGNAA-----VVLR 171 (365)
T ss_dssp EECTTTCCCTTTCSEEEEESSTTHHHHHHHHCSSSCCCEEEEESSSCTTTCCEESTTHHHHHHHHHHSCCB-----EEEE
T ss_pred CCCCCHHHCCCCCCEEEEECCHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEECHHHHHHHHHHHHCCCCE-----EEEE
T ss_conf 23467656265789899986818999999985267997899908997530464589999999999869976-----9998
Q ss_pred EEEEEEEEEC--------------------------CEECCCCCCCCEEEEEEECCCCCCEEEEEEEECCEEEEEEEECE
Q ss_conf 7999999729--------------------------92237853210134897149998049999999998867997185
Q 002584 824 MRLCCEIFRN--------------------------GKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDG 877 (904)
Q Consensus 824 ~rL~~~I~r~--------------------------G~~~~~~~~~ALNEVvI~Rg~~~~l~~iei~vDg~~i~~~~gDG 877 (904)
+||++++.+. |+.. ..++|||||+|.|+..++|+++++|+||+++++|+|||
T Consensus 172 ~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~ALNEvvI~r~~~~~m~~~~v~idg~~~~~~~aDG 249 (365)
T 3pfn_A 172 SRLKVRVVKELRGKKTAVHNGLGEKGSQAAGLDMDVGKQA--MQYQVLNEVVIDRGPSSYLSNVDVYLDGHLITTVQGDG 249 (365)
T ss_dssp CCEEEEEEC-----------------------------CE--EEEEESSEEEEECTTCSSCCCEEEEETTEEEEEECSSE
T ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE--ECCCCCCEEEEECCCCCCEEEEEEEECCEEEEEEECCE
T ss_conf 6389999964566533223333333333334435699364--04472336999658877379999999999989994471
Q ss_pred EEECCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 9987973468984204996222468
Q 002584 878 VIVATPTGSTAYSTAAGGSMVICLP 902 (904)
Q Consensus 878 IIVSTPTGSTAYslSAGGPIV~~~~ 902 (904)
|||||||||||||+|||||||||--
T Consensus 250 lIVSTPTGSTAYslSAGGPIv~P~~ 274 (365)
T 3pfn_A 250 VIVSTPTGSTAYAAAAGASMIHPNV 274 (365)
T ss_dssp EEEECGGGGGTHHHHTTCCEECTTS
T ss_pred EEEECCCCHHHHHHHCCCCCCCCCC
T ss_conf 8982786577888757997438998
No 2
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=380.43 Aligned_cols=238 Identities=31% Similarity=0.531 Sum_probs=196.5
Q ss_pred CCCEEEEEECCCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCH-HHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHC-C
Q ss_conf 7510011212787544698145672013469979999824992-5899999999998308-98499994770356622-8
Q 002584 659 GFSCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQ-EKMNILVEPDVHDIFAR-I 735 (904)
Q Consensus 659 ~~sc~r~~~~~s~~~~~~ps~q~~~l~w~~~pk~VlIV~K~~~-~~~e~a~el~~~L~~~-~gi~V~ve~~~~~~l~~-~ 735 (904)
..+|+.+..+.....+.+|+++++.|.|.+++++|+||+|+++ .+.+.+.++++||.++ .+++|++++...+.+.. .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~V~II~n~~~~~~~~~~~~l~~~L~~~~~gi~V~ve~~~a~~l~~~~ 89 (388)
T 3afo_A 10 IKPVNNLRSSSSADFVSPPNSKLQSLIWQNPLQNVYITKKPWTPSTREAMVEFITHLHESYPEVNVIVQPDVAEEISQDF 89 (388)
T ss_dssp EEEGGGSCCCCCCEEEC----CCEEEECSSCCCEEEEEECTTCHHHHHHHHHHHHHHHHHCTTCEEECCHHHHHHHHTTC
T ss_pred EEEHHHCCCCCCCCEEECCCHHHEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHC
T ss_conf 01475657666866174742341152726777699999808998999999999999997379839999476666543310
Q ss_pred CCCC-----CCEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCC-CEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 9986-----31123115744336787599999087258999773179999-49998089975568889101999999999
Q 002584 736 PGFG-----FVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVP-PVISFNLGSLGFLTSHPFEDYRQDLRQVI 809 (904)
Q Consensus 736 ~~~~-----~~~~~~~~~~~d~~~~~DlVI~LGGDGTiL~Aar~~~~~~~-PVLGIN~GsLGFLt~~~~e~~~~~L~~il 809 (904)
+... ....++.....+....+|+||+||||||+|+|++.+....+ ||||||+|+||||+++++++++++|++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvlGGDGTlL~aa~~~~~~~vpPiLGIN~G~lGFLt~~~~~~~~~al~~il 169 (388)
T 3afo_A 90 KSPLENDPNRPHILYTGPEQDIVNRTDLLVTLGGDGTILHGVSMFGNTQVPPVLAFALGTLGFLSPFDFKEHKKVFQEVI 169 (388)
T ss_dssp CSCGGGCTTSCEEEEECCHHHHHHHCSEEEEEESHHHHHHHHHTTTTSCCCCEEEEECSSCCSSCCEEGGGHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 22223344333322334223303588889998083999999998505699829999799865477588678999999986
Q ss_pred CCCCCCCCEEEEEEEEEEEEEEECCEECCCCCCCCEEEEEEECCCCCCEEEEEEEECCEEEEEEEECEEEECCCCCHHHH
Q ss_conf 07998875146677799999972992237853210134897149998049999999998867997185998797346898
Q 002584 810 YGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAY 889 (904)
Q Consensus 810 ~G~~~i~~~~i~~R~rL~~~I~r~G~~~~~~~~~ALNEVvI~Rg~~~~l~~iei~vDg~~i~~~~gDGIIVSTPTGSTAY 889 (904)
+|+|. ++.|+||++++.++|+... ...+|||||+|.|+..++++.+++++||+++++++|||||||||||||||
T Consensus 170 ~g~~~-----~~~r~~L~~~v~~~~~~~~-~~~~ALNev~i~~~~~~~~~~~~v~id~~~~~~~~~DGliVsTPTGSTAY 243 (388)
T 3afo_A 170 SSRAK-----CLHRTRLECHLKKKDSNSS-IVTHAMNDIFLHRGNSPHLTNLDIFIDGEFLTRTTADGVALATPTGSTAY 243 (388)
T ss_dssp TTCCE-----EEEECCEEEEEECTTCCCC-EEEEESSEEEEECTTCSSCEEEEEEETTEEEEEEEEEEEEEECTGGGGTH
T ss_pred CCCCE-----EEEEEEEEEEEEECCCCCH-HHHEEECEEEEECCCCCCEEEEEEEECCEEEEEECCCEEEEECCCCHHHH
T ss_conf 69816-----9986679999971894110-01200036999538987289999999999987544886899278747899
Q ss_pred HHHCCCCCCCCCC
Q ss_conf 4204996222468
Q 002584 890 STAAGGSMVICLP 902 (904)
Q Consensus 890 slSAGGPIV~~~~ 902 (904)
|+|||||||||.-
T Consensus 244 slSAGGpIv~P~~ 256 (388)
T 3afo_A 244 SLSAGGSIVSPLV 256 (388)
T ss_dssp HHHTTCCEECTTS
T ss_pred HHHCCCCCCCCCC
T ss_conf 9734587216787
No 3
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=1.00 E-value=1 Score=319.49 Aligned_cols=177 Identities=24% Similarity=0.371 Sum_probs=152.1
Q ss_pred HCCCCC----CCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCCEEEECCCCCCCCCCCCE
Q ss_conf 201346----9979999824992589999999999830898499994770356622899863112311574433678759
Q 002584 683 MLMWKT----TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDF 758 (904)
Q Consensus 683 ~l~w~~----~pk~VlIV~K~~~~~~e~a~el~~~L~~~~gi~V~ve~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~Dl 758 (904)
.+.|.- .. +|+|+.|+..+ +.++.+||.+ .|++|.+++...+ ....+|+
T Consensus 19 ~~~~~~~~~~~m-ki~iv~~~~~~----~~~l~~~L~~-~g~~v~~~~~~~~---------------------~~~~~Dl 71 (278)
T 1z0s_A 19 NLYFQGGGGGGM-RAAVVYKTDGH----VKRIEEALKR-LEVEVELFNQPSE---------------------ELENFDF 71 (278)
T ss_dssp -----------C-EEEEEESSSTT----HHHHHHHHHH-TTCEEEEESSCCG---------------------GGGGSSE
T ss_pred EEEECCCCCCCE-EEEEEECCCHH----HHHHHHHHHH-CCCEEEECCCCCC---------------------CCCCCCE
T ss_conf 378848986636-99999689079----9999999998-8999997142124---------------------4579889
Q ss_pred EEEECCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEEECCEECC
Q ss_conf 99990872589997731799994999808997556888910199999999907998875146677799999972992237
Q 002584 759 VACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMP 838 (904)
Q Consensus 759 VI~LGGDGTiL~Aar~~~~~~~PVLGIN~GsLGFLt~~~~e~~~~~L~~il~G~~~i~~~~i~~R~rL~~~I~r~G~~~~ 838 (904)
||+||||||+|+|+|.+.+. +||+|||+|++|||++++++++++.|+++++ +|. ++.|+||++ +.+++
T Consensus 72 vIvlGGDGT~L~aa~~~~~~-~PilGIN~G~lGFLt~~~~~~~~~~l~~l~~-~~~-----i~~r~~L~~-v~~~~---- 139 (278)
T 1z0s_A 72 IVSVGGDGTILRILQKLKRC-PPIFGINTGRVGLLTHASPENFEVELKKAVE-KFE-----VERFPRVSC-SAMPD---- 139 (278)
T ss_dssp EEEEECHHHHHHHHTTCSSC-CCEEEEECSSSCTTCCBBTTBCHHHHHHHHH-HCC-----EEEECCEEE-TTEEE----
T ss_pred EEEECCCHHHHHHHHHHCCC-CCEEEECCCCCCCCCCCCHHHHHHHHHHHHH-HCE-----EEEEEEEEE-EECCC----
T ss_conf 99988878999999985799-8499987998763553687899999999984-085-----988579999-97898----
Q ss_pred CCCCCCEEEEEEECCCCCCEEEEEEEECCEEEEEEEECEEEECCCCCHHHHHHHCCCCCCCCC
Q ss_conf 853210134897149998049999999998867997185998797346898420499622246
Q 002584 839 GKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICL 901 (904)
Q Consensus 839 ~~~~~ALNEVvI~Rg~~~~l~~iei~vDg~~i~~~~gDGIIVSTPTGSTAYslSAGGPIV~~~ 901 (904)
..||||++|.|+..++++++++++||+++++++||||||||||||||||+|||||||+|-
T Consensus 140 ---~~ALNEv~I~~~~~~~~~~~~v~idg~~~~~~~~DGlIVsTPTGSTAY~lSAGGpIv~P~ 199 (278)
T 1z0s_A 140 ---VLALNEIAVLSRKPAKMIDVALRVDGVEVDRIRCDGFIVATQIGSTGYAFSAGGPVVEPY 199 (278)
T ss_dssp ---EEESSEEEEEESSTTCCEEEEEEETTEEEEEEEESEEEEEESGGGGTHHHHTTCCEECTT
T ss_pred ---CEEEEEEEEECCCCCCEEEEEEEECCEEEEEEECCEEEEECCCCHHHHHHHCCCCEECCC
T ss_conf ---279999999438876279999999999999996474999568761577751798552899
No 4
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=1.00 E-value=1 Score=300.10 Aligned_cols=204 Identities=28% Similarity=0.395 Sum_probs=165.1
Q ss_pred CCCEEEEEECCCHH-HHHHHHHHHHHHHCCCCEEEEECCCHHHHHH--CC-C----CCC-CCEEEECCCCCCCCCCCCEE
Q ss_conf 99799998249925-8999999999983089849999477035662--28-9----986-31123115744336787599
Q 002584 689 TPRTVLVLKKPGPA-LMEEAKEVASFLYHQEKMNILVEPDVHDIFA--RI-P----GFG-FVQTFYLQDTSDLHERVDFV 759 (904)
Q Consensus 689 ~pk~VlIV~K~~~~-~~e~a~el~~~L~~~~gi~V~ve~~~~~~l~--~~-~----~~~-~~~~~~~~~~~d~~~~~DlV 759 (904)
++++|+||.|+... ..+.+.++.+||.+ .+++|.+++...+.+. .. + ..+ ....+ . ......+.+|+|
T Consensus 3 ~m~ki~iI~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~-~~~~~~~~~d~v 79 (307)
T 1u0t_A 3 AHRSVLLVVHTGRDEATETARRVEKVLGD-NKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVV-D-ADQHAADGCELV 79 (307)
T ss_dssp --CEEEEEESSSGGGGSHHHHHHHHHHHT-TTCEEEEEC-------------------------------------CCCE
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHH-CCCEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCCEE
T ss_conf 88789999818987899999999999998-89999996343443200223432212346431002-4-310124588999
Q ss_pred EEECCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEEECCEECCC
Q ss_conf 99908725899977317999949998089975568889101999999999079988751466777999999729922378
Q 002584 760 ACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPG 839 (904)
Q Consensus 760 I~LGGDGTiL~Aar~~~~~~~PVLGIN~GsLGFLt~~~~e~~~~~L~~il~G~~~i~~~~i~~R~rL~~~I~r~G~~~~~ 839 (904)
|++|||||+|++++.+...++|++|||+|++|||+++.+++++++++.+++|+|. ++.|++|++.+.++|+..
T Consensus 80 i~~GGDGT~l~a~~~~~~~~~pvlgi~~G~~gfl~~~~~~~~~~~~~~i~~g~~~-----~~~r~~l~~~v~~~g~~~-- 152 (307)
T 1u0t_A 80 LVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDYR-----VEDRLTLDVVVRQGGRIV-- 152 (307)
T ss_dssp EEEECHHHHHHHHHHHHHHTCCEEEEECSSCCSSCSEEGGGHHHHHHHHHHTCCE-----EEEECCEEEEEEETTEEE--
T ss_pred EEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCE-----EEEEEEEEEEEEECCCCE--
T ss_conf 9992889999999974468997999969987627636978999999999849957-----999789999998276312--
Q ss_pred CCCCCEEEEEEECCCCCCEEEEEEEECCEEEEEEEECEEEECCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 532101348971499980499999999988679971859987973468984204996222468
Q 002584 840 KVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICLP 902 (904)
Q Consensus 840 ~~~~ALNEVvI~Rg~~~~l~~iei~vDg~~i~~~~gDGIIVSTPTGSTAYslSAGGPIV~~~~ 902 (904)
....||||++|.++..++++++++++||++++++++||+||||||||||||+|||||||+|--
T Consensus 153 ~~~~ALNev~i~~~~~~~~~~~~v~idg~~~~~~~~dGlivsTptGSTaY~lSaGGpiv~P~~ 215 (307)
T 1u0t_A 153 NRGWALNEVSLEKGPRLGVLGVVVEIDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDL 215 (307)
T ss_dssp EEEEESSEEEEECSSSSSCEEEEEESSSSEEEEEEESEEEEECTGGGGTHHHHTTCCEECTTC
T ss_pred ECEEEEEEEEEECCCCCEEEEEEEEECCEEEEEECCCEEEECCCHHHHHHHHCCCCCCCCCCC
T ss_conf 020145358980488761899999999999888728999986500668998669998238988
No 5
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=1.00 E-value=1 Score=285.65 Aligned_cols=198 Identities=25% Similarity=0.402 Sum_probs=163.4
Q ss_pred CCEEEEEECCCHH-HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCHH
Q ss_conf 9799998249925-899999999998308984999947703566228998631123115744336787599999087258
Q 002584 690 PRTVLVLKKPGPA-LMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (904)
Q Consensus 690 pk~VlIV~K~~~~-~~e~a~el~~~L~~~~gi~V~ve~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVI~LGGDGTi 768 (904)
.++++||.++..+ ..+.+.++.+||.+ .+++|.+++...+.+. .++. ..+ ........+|+||++|||||+
T Consensus 5 mkki~ii~np~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~-~~~~---~~~---~~~~~~~~~D~vi~~GGDGT~ 76 (292)
T 2an1_A 5 FKCIGIVGHPRHPTALTTHEMLYRWLCD-QGYEVIVEQQIAHELQ-LKNV---PTG---TLAEIGQQADLAVVVGGDGNM 76 (292)
T ss_dssp CCEEEEECC-------CHHHHHHHHHHH-TTCEEEEEHHHHHHTT-CSSC---CEE---CHHHHHHHCSEEEECSCHHHH
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHH-CCCEEEEECCHHHHCC-CCCC---CCC---CHHHCCCCCCEEEEECCCHHH
T ss_conf 8599999759987899999999999998-8999999524032215-4555---444---533416698899998284999
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEEECCEECCCCCCCCEEEE
Q ss_conf 99977317999949998089975568889101999999999079988751466777999999729922378532101348
Q 002584 769 LHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEV 848 (904)
Q Consensus 769 L~Aar~~~~~~~PVLGIN~GsLGFLt~~~~e~~~~~L~~il~G~~~i~~~~i~~R~rL~~~I~r~G~~~~~~~~~ALNEV 848 (904)
|++++.+...++|+||||+|++|||+++.+++++++++.+++|++ .++.|++|.+.+.++++.. ...+||||+
T Consensus 77 l~a~~~~~~~~~P~lGI~~Gt~gfla~~~~~~~~~al~~i~~g~~-----~~~~r~~l~~~~~~~~~~~--~~~~alnev 149 (292)
T 2an1_A 77 LGAARTLARYDINVIGINRGNLGFLTDLDPDNALQQLSDVLEGRY-----ISEKRFLLEAQVCQQDRQK--RISTAINEV 149 (292)
T ss_dssp HHHHHHHTTSSCEEEEBCSSSCCSSCCBCTTSHHHHHHHHHTTCE-----EEEEEEEEEEEEECC------CEEEESSEE
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCC-----EEEEEEEEEEEEEECCCEE--EEEEEEEEE
T ss_conf 999998536799899998997663786887899999999986997-----7999379999998389147--613686008
Q ss_pred EEECCCCCCEEEEEEEECCEEEEEEEECEEEECCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 971499980499999999988679971859987973468984204996222468
Q 002584 849 VVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICLP 902 (904)
Q Consensus 849 vI~Rg~~~~l~~iei~vDg~~i~~~~gDGIIVSTPTGSTAYslSAGGPIV~~~~ 902 (904)
+|.++...++.++++++||++++++++||+||||||||||||+|||||+++|--
T Consensus 150 ~i~~~~~~~~~~~~v~idg~~~~~~~~dglivstptGSTay~~SaGG~iv~P~~ 203 (292)
T 2an1_A 150 VLHPGKVAHMIEFEVYIDETFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSL 203 (292)
T ss_dssp EEEESSTTCCEEEEEEETTEEEEEEEESEEEEECTGGGGTHHHHTTCCEECTTC
T ss_pred EEECCCCCCEEEEEEEECCEEEEEEEECEEEECCCCCHHHHHHHCCCCCCCCCC
T ss_conf 992489872699999999999999985789998877469999768899779998
No 6
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=1.00 E-value=1 Score=277.41 Aligned_cols=172 Identities=20% Similarity=0.250 Sum_probs=147.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCHHHHH
Q ss_conf 99998249925899999999998308984999947703566228998631123115744336787599999087258999
Q 002584 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 771 (904)
Q Consensus 692 ~VlIV~K~~~~~~e~a~el~~~L~~~~gi~V~ve~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVI~LGGDGTiL~A 771 (904)
+++|+.++.....+.+.++.+||.+ .++++ + ...+|+||++|||||+|++
T Consensus 2 ki~ii~n~~~~~~~~~~~l~~~l~~-~g~~v--~---------------------------~~~~D~vv~lGGDGT~l~a 51 (272)
T 2i2c_A 2 KYMITSKGDEKSDLLRLNMIAGFGE-YDMEY--D---------------------------DVEPEIVISIGGDGTFLSA 51 (272)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTT-SSCEE--C---------------------------SSSCSEEEEEESHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHH-CCCEE--C---------------------------CCCCCEEEEECCCHHHHHH
T ss_conf 8999978977899999999999998-77870--7---------------------------7788899998685999999
Q ss_pred HHHCCCC--CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEEEC-CEECCCCCCCCEEEE
Q ss_conf 7731799--9949998089975568889101999999999079988751466777999999729-922378532101348
Q 002584 772 SNLFRGA--VPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRN-GKAMPGKVFDVLNEV 848 (904)
Q Consensus 772 ar~~~~~--~~PVLGIN~GsLGFLt~~~~e~~~~~L~~il~G~~~i~~~~i~~R~rL~~~I~r~-G~~~~~~~~~ALNEV 848 (904)
++.+.+. ++||+|||+|++|||+++.+++++++++.+++|+|. ++.|++|++++.++ |+.. ....||||+
T Consensus 52 a~~~~~~~~~~PilGIn~G~lgfl~~~~~~~~~~~l~~l~~g~~~-----i~~r~~L~~~v~~~~g~~~--~~~~ALNev 124 (272)
T 2i2c_A 52 FHQYEERLDEIAFIGIHTGHLGFYADWRPAEADKLVKLLAKGEYQ-----KVSYPLLKTTVKYGIGKKE--ATYLALNES 124 (272)
T ss_dssp HHHTGGGTTTCEEEEEESSSCCSSCCBCGGGHHHHHHHHHTTCCE-----EEEEEEEEEEEEESSSCCE--EEEEESSEE
T ss_pred HHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCE-----EEEEEEEEEEEEECCCCEE--EHHHHHHHH
T ss_conf 998765379997999969987757728978999999999859977-----9999879999991799288--177664376
Q ss_pred EEECCCCCCEEEEEEEECCEEEEEEEECEEEECCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 971499980499999999988679971859987973468984204996222468
Q 002584 849 VVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICLP 902 (904)
Q Consensus 849 vI~Rg~~~~l~~iei~vDg~~i~~~~gDGIIVSTPTGSTAYslSAGGPIV~~~~ 902 (904)
+|.+. .+++++++++||++++++++||+|||||||||||++|||||||+|--
T Consensus 125 ~i~~~--~~~~~~~i~idg~~~~~~~~DGlivsTptGSTaY~~SaGGpiv~P~~ 176 (272)
T 2i2c_A 125 TVKSS--GGPFVVDVVINDIHFERFRGDGLCMSTPSGTTAYNKSLGGALMHPSI 176 (272)
T ss_dssp EEEES--SSCEEEEEEETTEEEEEEEESEEEEECTGGGGTHHHHTTCCCCCTTS
T ss_pred HHCCC--CCEEEEEEEECCEEEEEEECCEEEEECCCCHHHHHHCCCCCEECCCC
T ss_conf 20256--71799999999999999777999997166589999708997557787
No 7
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=269.53 Aligned_cols=172 Identities=24% Similarity=0.289 Sum_probs=141.2
Q ss_pred EEEEEECCCHH--HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCHHH
Q ss_conf 99998249925--8999999999983089849999477035662289986311231157443367875999990872589
Q 002584 692 TVLVLKKPGPA--LMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (904)
Q Consensus 692 ~VlIV~K~~~~--~~e~a~el~~~L~~~~gi~V~ve~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~DlVI~LGGDGTiL 769 (904)
+++|+.+|... ..+.+.++.++|. ++++.. . + .....++|+||++|||||+|
T Consensus 2 ki~ii~Np~~~~~~~~~~~~i~~~l~---~~~~~~--~--------------------~-~~~~~~~D~vv~~GGDGTll 55 (258)
T 1yt5_A 2 KIAILYREEREKEGEFLKEKISKEHE---VIEFGE--A--------------------N-APGRVTADLIVVVGGDGTVL 55 (258)
T ss_dssp EEEEEECGGGHHHHHHHHHHHTTTSE---EEEEEE--S--------------------S-SCSCBCCSEEEEEECHHHHH
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHC---CCCEEC--C--------------------C-CCCCCCCCEEEEEECCHHHH
T ss_conf 89999708981689999999999851---780531--5--------------------5-23467989999992848999
Q ss_pred HHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEEECCEECCCCCCCCEEEEE
Q ss_conf 99773179999499980899755688891019999999990799887514667779999997299223785321013489
Q 002584 770 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (904)
Q Consensus 770 ~Aar~~~~~~~PVLGIN~GsLGFLt~~~~e~~~~~L~~il~G~~~i~~~~i~~R~rL~~~I~r~G~~~~~~~~~ALNEVv 849 (904)
++++.+.. .+|++|||+|++|||+++.+++++++++++++|++. ++.|++|.+.+.+. ..+||||++
T Consensus 56 ~~a~~~~~-~~PilGIn~G~~Gfl~~~~~~~~~~al~~i~~g~~~-----i~~r~~l~~~~~~~-------~~~alNev~ 122 (258)
T 1yt5_A 56 KAAKKAAD-GTPMVGFKAGRLGFLTSYTLDEIDRFLEDLRNWNFR-----EETRWFIQIESELG-------NHLALNDVT 122 (258)
T ss_dssp HHHTTBCT-TCEEEEEESSSCCSSCCBCGGGHHHHHHHHHTTCCE-----EEEEEEEEEEETTE-------EEEESSEEE
T ss_pred HHHHHHCC-CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCE-----EEEEEEEEEEECCC-------CCEEEEEEE
T ss_conf 99998379-998999979998726737878999999999759926-----99988999999588-------303555789
Q ss_pred EECCCCCCEEEEEEEECCEEEEEEEECEEEECCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 71499980499999999988679971859987973468984204996222468
Q 002584 850 VDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVICLP 902 (904)
Q Consensus 850 I~Rg~~~~l~~iei~vDg~~i~~~~gDGIIVSTPTGSTAYslSAGGPIV~~~~ 902 (904)
|.++...++.++++++||++++++++||+||||||||||||+||||||++|--
T Consensus 123 i~~~~~~~~~~~~v~idg~~~~~~~~dGlivsTptGSTaY~~SaGGpiv~P~~ 175 (258)
T 1yt5_A 123 LERDLSGKMVEIEVEVEHHSSMWFFADGVVISTPTGSTAYSLSIGGPIIFPEC 175 (258)
T ss_dssp EECCTTSCCEEEEEEETTSCCEEEEESEEEEECTGGGGTTTTTTTCCCCCTTC
T ss_pred EECCCCCCEEEEEEEECCEEEEEEECCEEEEECCCCCHHHHHHCCCCCCCCCC
T ss_conf 70378873699999999999999973579997278737777407996048888
No 8
>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel beta sheet with flanking helices, structural genomics, PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5 PDB: 2oz5_A*
Probab=1.00 E-value=1 Score=227.29 Aligned_cols=185 Identities=15% Similarity=0.132 Sum_probs=142.6
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCC---CHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 987677883002205776655667874409985999---97429999975981999869884257520566487541199
Q 002584 240 PIHTLFANWSPVYLSNSKDDIASKDSEVTFCRGGQV---TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGK 316 (904)
Q Consensus 240 p~~t~i~Nfr~V~~s~~~~~~~~~~~e~~LYRSgqp---TeedLa~LkelGIKTVIDLRse~~ee~~y~a~e~e~ve~~G 316 (904)
.....+.|||++++.++. ...+.||||+++ +++++++|+++||+||||||++. |.... .+.....|
T Consensus 24 l~l~g~~NfRDlGGy~t~------vr~G~lyRS~~l~~lt~~d~~~L~~lGI~tVIDLR~~~-E~~~~----~pd~~~~G 92 (296)
T 1ywf_A 24 RELPGAWNFRDVADTATA------LRPGRLFRSSELSRLDDAGRATLRRLGITDVADLRSSR-EVARR----GPGRVPDG 92 (296)
T ss_dssp CCCTTCCSCEEGGGTCTT------SCTTSEEEESCCTTCCHHHHHHHHHHTCCEEEECCCHH-HHHHH----CSCCCCTT
T ss_pred CCCCCCCCCCCCCCCCCC------CCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEECCCHH-HHHCC----CCCCCCCC
T ss_conf 058998836457886224------36762323577453999999999967998899892856-62113----89878788
Q ss_pred CEEEEEECCCCCC-------C-------------------C--------------------------HHHHHHHHHHHHC
Q ss_conf 3999972689999-------9-------------------9--------------------------9999999999853
Q 002584 317 VELIKIPVEVRTA-------P-------------------T--------------------------MEQVEKFASLVSN 344 (904)
Q Consensus 317 I~yIhIPV~d~~~-------P-------------------s--------------------------~E~I~aFl~lI~d 344 (904)
++|+|+|+.+... | . ...+.++++.+.
T Consensus 93 i~~~~iPi~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~m~~~Y~~~~~~~~~~~~~~~~l~~l~- 171 (296)
T 1ywf_A 93 IDVHLLPFPDLADDDADDSAPHETAFKRLLTNDGSNGESGESSQSINDAATRYMTDEYRQFPTRNGAQRALHRVVTLLA- 171 (296)
T ss_dssp CEEEECCCCCSCC-------------------------------CCCHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHH-
T ss_pred CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC-
T ss_conf 7799933766433211234420367888864101223310011001100899999999999853236899999999754-
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHH----------------------------
Q ss_conf 9999698827479993999999999974999989998421131011201688----------------------------
Q 002584 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDVLLKDSTR---------------------------- 396 (904)
Q Consensus 345 s~~~PVLVHCtAGKDRTGaLvaLlr~~~Gvs~eeAi~Dylltn~~l~~~~e~---------------------------- 396 (904)
. ++|+||||++||||||+++++++...||+.++|++||+++|.++....+.
T Consensus 172 ~-~~pvl~HC~aGkDRTG~~~alll~~~g~~~~~I~~DY~~Tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (296)
T 1ywf_A 172 A-GRPVLTHCFAGKDRTGFVVALVLEAVGLDRDVIVADYLRSNDSVPQLRARISEMIQQRFDTELAPEVVTFTKARLSDG 250 (296)
T ss_dssp T-TCCEEEECSSSSSHHHHHHHHHHHHTTCCHHHHHHHHHGGGGGHHHHHHHHHHHHHTTTTSCCCHHHHHHHHTTTCHH
T ss_pred C-CCCEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 4-898898788877650489999999819999999999999998799999999999875213333425777642332124
Q ss_pred ---HHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf ---875210100114445224033435421035662123321201
Q 002584 397 ---TRKLKASAGKFLLEEKYETVKENQDEIQTKNGVFGFGLSVDM 438 (904)
Q Consensus 397 ---~~~~~m~a~l~~l~~~~G~~e~~~~~~~~~~~~~ie~ir~nl 438 (904)
+..+.|.+++..++++|||+++|+++. |+++.+++++|.++
T Consensus 251 ~~~~~~~~l~~~l~~i~~~yGs~~~YL~~~-Gl~~~~i~~LR~~l 294 (296)
T 1ywf_A 251 VLGVRAEYLAAARQTIDETYGSLGGYLRDA-GISQATVNRMRGVL 294 (296)
T ss_dssp HHSCCHHHHHHHHHHHHHHHSSHHHHHHHT-TCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCHHHHHHHC-CCCHHHHHHHHHHH
T ss_conf 506689999999999999809999999886-99999999999985
No 9
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A
Probab=1.00 E-value=1 Score=158.22 Aligned_cols=127 Identities=17% Similarity=0.215 Sum_probs=104.4
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 77883002205776655667874409985999974299999759819998698842575205664875411993999972
Q 002584 244 LFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIP 323 (904)
Q Consensus 244 ~i~Nfr~V~~s~~~~~~~~~~~e~~LYRSgqpTeedLa~LkelGIKTVIDLRse~~ee~~y~a~e~e~ve~~GI~yIhIP 323 (904)
...||+.|. +.||||++|+++++++|+++||++|||||++. +.. ...+.++..|++|+|+|
T Consensus 4 pp~n~~~v~--------------~~l~~s~~~~~~d~~~L~~~gi~~Vi~l~~~~-e~~----~~~~~~~~~gi~~~~ip 64 (151)
T 1xri_A 4 PPLNFSMVD--------------NGIFRSGFPDSANFSFLQTLGLRSIIYLCPEP-YPE----SNLQFLKSNGIRLFQFG 64 (151)
T ss_dssp CCTTCEEEE--------------TTEEEESCCCHHHHHHHHHHTCSEEEECCSSC-CCH----HHHHHHHHHTCEEEECC
T ss_pred CCCCCCEEC--------------CCEEECCCCCCCCHHHHHHCCCCEEEECCCCC-CCH----HHHHHHHHCCCEEEECC
T ss_conf 975737557--------------98277899681288999878998899788987-673----68899986598599626
Q ss_pred CCCCC----CCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC
Q ss_conf 68999----9999999999999853999969882747999399999999997499998999842113101
Q 002584 324 VEVRT----APTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDV 389 (904)
Q Consensus 324 V~d~~----~Ps~E~I~aFl~lI~ds~~~PVLVHCtAGKDRTGaLvaLlr~~~Gvs~eeAi~Dylltn~~ 389 (904)
+.+.. .++.+++.++++.+.+..++|+||||++|+||||+++++++...||+.++|+++|...++.
T Consensus 65 i~d~~~~~~~~~~~~~~~~~~~i~~~~~~~vlvHC~aG~~RTg~~~a~~l~~~g~~~~~a~~~~~~~~~~ 134 (151)
T 1xri_A 65 IEGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLTSIFDEYQRFAAA 134 (151)
T ss_dssp CCCCCGGGCCCCHHHHHHHHHHHHCGGGCSEEEECSSSSSHHHHHHHHHHHHTTBCHHHHHHHHHHHHGG
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 2114576655799999999999975899878988898997899999999998099999999999985588
No 10
>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}
Probab=1.00 E-value=1 Score=147.30 Aligned_cols=130 Identities=18% Similarity=0.175 Sum_probs=106.1
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCEEEECCCCCCC--CCCHHHHHHHHHHCCCCE-EEEE
Q ss_conf 8830022057766556678744099859999742999997598199986988425--752056648754119939-9997
Q 002584 246 ANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVK--DNFYEAAIDDAILSGKVE-LIKI 322 (904)
Q Consensus 246 ~Nfr~V~~s~~~~~~~~~~~e~~LYRSgqpTeedLa~LkelGIKTVIDLRse~~e--e~~y~a~e~e~ve~~GI~-yIhI 322 (904)
.||+.|. +.||||++++++++++|+++||++|||||++.+. .+.+ ..+...++..||+ |+|+
T Consensus 15 ~n~~~v~--------------~~l~rs~~~~~~d~~~L~~~Gi~~IIdlR~~~E~~~~p~~-~~~~~~~~~~gi~~~~~i 79 (156)
T 2f46_A 15 MAILKLD--------------EHLYISPQLTKADAEQIAQLGIKTIICNRPDREEESQPDF-AQIKQWLEQAGVTGFHHQ 79 (156)
T ss_dssp CCCEEEE--------------TTEEEESCCCGGGHHHHHHHTCCEEEECSCTTSSTTCCCH-HHHHHHHGGGTCCEEEEC
T ss_pred CCCEECC--------------CCEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCH-HHHHHHHHHCCCHHHEEC
T ss_conf 5714526--------------8878808989999999998899799989897535689867-999999998797764577
Q ss_pred ECCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 26899999999999999998539999698827479993999999999974999989998421131011201
Q 002584 323 PVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDVLLKD 393 (904)
Q Consensus 323 PV~d~~~Ps~E~I~aFl~lI~ds~~~PVLVHCtAGKDRTGaLvaLlr~~~Gvs~eeAi~Dylltn~~l~~~ 393 (904)
|+.+. .++.+.+.+|.+++. ..++||||||++|+ |+++++++++...||+.++|++++-.....+..-
T Consensus 80 Pv~~~-~~~~~~~~~~~~~l~-~~~~pVlvHC~sG~-Rs~~l~al~l~~~g~~~~~a~~~~~~~g~~l~~~ 147 (156)
T 2f46_A 80 PVTAR-DIQKHDVETFRQLIG-QAEYPVLAYCRTGT-RCSLLWGFRRAAEGMPVDEIIRRAQAAGVNLENF 147 (156)
T ss_dssp CCCTT-TCCHHHHHHHHHHHH-TSCSSEEEECSSSH-HHHHHHHHHHHHTTCCHHHHHHHHHHTTCCCGGG
T ss_pred CCCCC-CCCHHHHHHHHHHHH-HCCCCEEEECCCCC-CHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHH
T ss_conf 45789-999999999999997-08998998899998-7899999999981989999999999829981789
Done!