Query 002585
Match_columns 904
No_of_seqs 370 out of 2093
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 02:58:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02784 alpha-amylase 100.0 6E-182 1E-186 1589.4 78.4 886 1-899 1-893 (894)
2 PLN00196 alpha-amylase; Provis 100.0 3.3E-70 7.3E-75 623.2 40.4 390 509-899 25-427 (428)
3 PLN02361 alpha-amylase 100.0 1.1E-69 2.5E-74 612.2 40.9 386 507-899 10-401 (401)
4 PRK10785 maltodextrin glucosid 100.0 2.6E-65 5.7E-70 608.5 31.1 436 393-874 47-559 (598)
5 PRK09441 cytoplasmic alpha-amy 100.0 1.5E-57 3.3E-62 530.9 38.3 349 509-876 4-431 (479)
6 PRK09505 malS alpha-amylase; R 100.0 1.4E-56 3.1E-61 533.6 31.1 360 470-873 190-681 (683)
7 TIGR02456 treS_nterm trehalose 100.0 2.1E-54 4.6E-59 510.8 32.2 353 503-876 4-491 (539)
8 TIGR02403 trehalose_treC alpha 100.0 1.3E-52 2.8E-57 495.1 29.6 353 504-877 4-503 (543)
9 PRK10933 trehalose-6-phosphate 100.0 2.5E-51 5.4E-56 483.8 33.1 334 523-877 29-509 (551)
10 TIGR02402 trehalose_TreZ malto 100.0 5E-48 1.1E-52 454.9 31.3 341 503-877 92-538 (542)
11 TIGR02104 pulA_typeI pullulana 100.0 4.3E-48 9.3E-53 462.3 27.3 348 504-876 127-580 (605)
12 PF00128 Alpha-amylase: Alpha 100.0 1.4E-48 3.1E-53 426.2 16.8 284 524-825 1-309 (316)
13 TIGR02100 glgX_debranch glycog 100.0 7.8E-47 1.7E-51 453.5 31.6 319 503-849 154-577 (688)
14 PRK12313 glycogen branching en 100.0 1.3E-46 2.9E-51 451.9 33.2 333 504-876 147-562 (633)
15 TIGR01515 branching_enzym alph 100.0 7E-47 1.5E-51 451.8 30.3 336 505-876 139-549 (613)
16 PRK03705 glycogen debranching 100.0 2.1E-46 4.6E-51 446.8 29.7 357 502-888 148-630 (658)
17 PRK14510 putative bifunctional 100.0 7.1E-46 1.5E-50 467.0 32.6 318 504-853 158-581 (1221)
18 PRK05402 glycogen branching en 100.0 3E-45 6.4E-50 445.4 33.1 334 504-876 241-658 (726)
19 PRK14706 glycogen branching en 100.0 9.7E-44 2.1E-48 423.3 30.6 337 505-875 145-556 (639)
20 TIGR02102 pullulan_Gpos pullul 100.0 1.1E-42 2.4E-47 428.6 33.4 348 502-875 449-948 (1111)
21 TIGR03852 sucrose_gtfA sucrose 100.0 2.9E-42 6.3E-47 393.7 23.4 332 510-876 3-463 (470)
22 PRK12568 glycogen branching en 100.0 1.2E-40 2.6E-45 396.1 34.0 331 503-875 245-662 (730)
23 PRK13840 sucrose phosphorylase 100.0 4.9E-41 1.1E-45 385.7 28.6 330 510-874 5-467 (495)
24 PLN02960 alpha-amylase 100.0 6.1E-40 1.3E-44 389.9 32.7 338 504-876 395-823 (897)
25 PRK14705 glycogen branching en 100.0 8.1E-40 1.8E-44 405.4 29.8 327 504-875 747-1156(1224)
26 COG0366 AmyA Glycosidases [Car 100.0 4.7E-40 1E-44 385.1 21.8 338 523-876 25-485 (505)
27 TIGR02103 pullul_strch alpha-1 100.0 1.1E-38 2.3E-43 386.9 24.5 348 503-863 251-818 (898)
28 PLN02447 1,4-alpha-glucan-bran 100.0 2E-37 4.2E-42 369.3 32.9 334 505-877 230-664 (758)
29 KOG0471 Alpha-amylase [Carbohy 100.0 2.8E-37 6.1E-42 363.2 23.5 374 501-878 14-507 (545)
30 PLN02877 alpha-amylase/limit d 100.0 1.4E-36 3.1E-41 367.3 27.9 347 503-863 338-887 (970)
31 TIGR02455 TreS_stutzeri trehal 100.0 7.1E-36 1.5E-40 343.8 31.5 351 530-901 77-683 (688)
32 COG1523 PulA Type II secretory 100.0 7.2E-36 1.6E-40 353.2 16.9 321 498-847 165-594 (697)
33 TIGR02401 trehalose_TreY malto 100.0 8.1E-34 1.8E-38 339.6 29.3 186 523-708 12-287 (825)
34 COG0296 GlgB 1,4-alpha-glucan 100.0 3.2E-34 6.9E-39 334.3 23.4 339 504-878 144-563 (628)
35 PLN02784 alpha-amylase 100.0 5.6E-35 1.2E-39 346.1 15.7 163 47-216 229-394 (894)
36 PRK14511 maltooligosyl trehalo 100.0 1.1E-27 2.4E-32 288.1 31.8 82 523-604 16-99 (879)
37 KOG0470 1,4-alpha-glucan branc 100.0 7.3E-29 1.6E-33 286.4 17.3 164 504-684 229-407 (757)
38 PLN03244 alpha-amylase; Provis 100.0 1.4E-27 2.9E-32 279.7 26.5 281 560-877 427-799 (872)
39 KOG2212 Alpha-amylase [Carbohy 99.9 1.4E-25 3E-30 238.0 22.1 331 507-878 27-444 (504)
40 smart00642 Aamy Alpha-amylase 99.9 4E-24 8.7E-29 215.8 10.8 92 510-601 2-97 (166)
41 PRK14507 putative bifunctional 99.8 7.8E-19 1.7E-23 223.4 17.9 81 522-602 753-835 (1693)
42 COG3280 TreY Maltooligosyl tre 99.7 8.6E-17 1.9E-21 186.1 14.9 78 525-602 17-96 (889)
43 TIGR01531 glyc_debranch glycog 99.5 4.6E-14 1E-18 175.3 8.9 83 523-605 128-216 (1464)
44 PF14701 hDGE_amylase: glucano 98.7 3.2E-08 7E-13 112.4 8.4 84 523-606 18-109 (423)
45 PF14872 GHL5: Hypothetical gl 98.6 2.6E-07 5.7E-12 106.9 10.6 134 522-684 191-393 (811)
46 PF02324 Glyco_hydro_70: Glyco 98.5 2.5E-06 5.4E-11 99.8 15.9 202 643-863 140-422 (809)
47 PF02638 DUF187: Glycosyl hydr 98.1 1.4E-05 3.1E-10 89.1 12.1 142 525-680 17-162 (311)
48 PF14871 GHL6: Hypothetical gl 97.9 7.6E-05 1.7E-09 72.9 10.7 125 530-680 3-132 (132)
49 PF02324 Glyco_hydro_70: Glyco 97.6 8.8E-05 1.9E-09 87.3 6.9 77 525-601 585-674 (809)
50 PF07821 Alpha-amyl_C2: Alpha- 97.6 0.00016 3.6E-09 60.2 6.0 58 840-899 2-59 (59)
51 COG1649 Uncharacterized protei 97.4 0.00058 1.3E-08 78.1 9.6 142 524-681 61-208 (418)
52 PRK14508 4-alpha-glucanotransf 97.3 0.011 2.3E-07 70.2 19.3 44 524-567 23-68 (497)
53 smart00810 Alpha-amyl_C2 Alpha 97.3 0.0012 2.7E-08 55.5 7.7 60 840-899 2-61 (61)
54 PF11941 DUF3459: Domain of un 97.2 0.001 2.2E-08 60.0 7.3 47 830-876 1-54 (89)
55 KOG3625 Alpha amylase [Carbohy 97.2 0.00042 9.1E-09 83.3 5.1 81 524-604 139-227 (1521)
56 PLN02635 disproportionating en 97.1 0.017 3.7E-07 68.9 18.4 58 509-567 31-95 (538)
57 cd06592 GH31_glucosidase_KIAA1 96.6 0.018 4E-07 64.1 12.1 136 524-683 27-166 (303)
58 cd06597 GH31_transferase_CtsY 96.5 0.015 3.3E-07 65.9 10.9 144 525-683 22-188 (340)
59 cd06593 GH31_xylosidase_YicI Y 96.4 0.027 5.9E-07 62.8 12.5 141 524-687 21-164 (308)
60 PF02065 Melibiase: Melibiase; 96.2 0.063 1.4E-06 61.9 13.7 138 525-684 56-195 (394)
61 PLN02316 synthase/transferase 95.5 0.22 4.9E-06 63.6 15.6 96 96-217 140-241 (1036)
62 PLN02316 synthase/transferase 95.4 0.37 8E-06 61.7 17.3 74 311-400 506-581 (1036)
63 PF13199 Glyco_hydro_66: Glyco 95.4 0.08 1.7E-06 63.5 10.9 141 524-682 115-268 (559)
64 cd06599 GH31_glycosidase_Aec37 95.3 0.13 2.9E-06 57.6 11.6 138 526-682 28-168 (317)
65 PF03423 CBM_25: Carbohydrate 95.2 0.076 1.6E-06 48.2 7.5 66 124-213 21-86 (87)
66 PF13200 DUF4015: Putative gly 95.1 0.14 3.1E-06 57.2 11.0 133 524-682 10-147 (316)
67 TIGR01531 glyc_debranch glycog 95.0 0.45 9.8E-06 61.9 15.9 64 644-709 474-546 (1464)
68 cd06594 GH31_glucosidase_YihQ 94.8 0.047 1E-06 61.3 6.2 143 525-685 21-169 (317)
69 PRK14582 pgaB outer membrane N 94.5 0.25 5.4E-06 60.6 11.6 129 526-680 333-466 (671)
70 cd06591 GH31_xylosidase_XylS X 93.4 0.2 4.4E-06 56.3 7.6 137 524-683 21-160 (319)
71 PF14488 DUF4434: Domain of un 93.1 0.43 9.4E-06 48.6 8.8 71 526-598 19-89 (166)
72 cd06604 GH31_glucosidase_II_Ma 93.1 0.3 6.5E-06 55.3 8.5 133 525-682 22-159 (339)
73 cd06602 GH31_MGAM_SI_GAA This 93.0 0.55 1.2E-05 53.3 10.4 140 525-683 22-166 (339)
74 PF00150 Cellulase: Cellulase 92.9 0.17 3.6E-06 54.8 5.8 78 506-597 4-85 (281)
75 PRK10426 alpha-glucosidase; Pr 92.9 0.49 1.1E-05 58.1 10.5 132 526-685 220-366 (635)
76 PF01055 Glyco_hydro_31: Glyco 92.4 0.52 1.1E-05 55.2 9.6 134 525-684 41-182 (441)
77 TIGR00217 malQ 4-alpha-glucano 92.1 0.72 1.6E-05 55.2 10.1 24 574-597 212-235 (513)
78 cd06600 GH31_MGAM-like This fa 92.0 0.48 1E-05 53.2 8.3 135 524-682 21-160 (317)
79 KOG3625 Alpha amylase [Carbohy 91.9 3.1 6.7E-05 51.6 14.9 68 643-712 495-571 (1521)
80 PF02446 Glyco_hydro_77: 4-alp 91.6 0.42 9.1E-06 57.0 7.5 179 574-798 192-397 (496)
81 PRK10658 putative alpha-glucos 90.6 0.63 1.4E-05 57.4 8.0 131 526-685 282-421 (665)
82 PF07745 Glyco_hydro_53: Glyco 90.5 0.8 1.7E-05 51.8 8.0 57 530-599 27-83 (332)
83 PF05913 DUF871: Bacterial pro 90.5 0.59 1.3E-05 53.4 7.0 58 525-597 12-70 (357)
84 cd06598 GH31_transferase_CtsZ 90.4 0.71 1.5E-05 51.9 7.5 133 525-682 22-164 (317)
85 cd06542 GH18_EndoS-like Endo-b 89.6 1.1 2.5E-05 48.4 8.1 65 572-681 49-113 (255)
86 COG3589 Uncharacterized conser 89.5 0.58 1.2E-05 52.1 5.6 60 524-597 13-72 (360)
87 PRK14507 putative bifunctional 89.3 0.86 1.9E-05 61.0 8.0 57 637-693 1032-1090(1693)
88 cd06562 GH20_HexA_HexB-like Be 89.0 3.7 8E-05 46.8 12.0 125 525-671 16-148 (348)
89 PRK11052 malQ 4-alpha-glucanot 88.9 1.6 3.5E-05 54.1 9.5 24 574-597 355-380 (695)
90 cd02875 GH18_chitobiase Chitob 88.0 0.86 1.9E-05 52.1 6.1 31 652-682 92-122 (358)
91 PF02449 Glyco_hydro_42: Beta- 86.9 1.3 2.8E-05 50.8 6.8 123 527-682 10-138 (374)
92 cd06568 GH20_SpHex_like A subg 85.8 8.4 0.00018 43.7 12.3 124 525-670 16-152 (329)
93 cd06564 GH20_DspB_LnbB-like Gl 85.5 5.8 0.00013 44.7 10.9 118 525-672 15-155 (326)
94 cd02742 GH20_hexosaminidase Be 84.7 4 8.7E-05 45.6 9.0 120 525-669 14-145 (303)
95 PLN02763 hydrolase, hydrolyzin 84.3 2 4.3E-05 54.9 7.0 133 525-682 199-336 (978)
96 cd06595 GH31_xylosidase_XylS-l 84.2 2.7 5.8E-05 46.7 7.4 130 524-682 22-159 (292)
97 cd06601 GH31_lyase_GLase GLase 84.2 2.6 5.6E-05 47.8 7.3 109 525-682 22-133 (332)
98 cd06569 GH20_Sm-chitobiase-lik 83.9 3.3 7.1E-05 48.9 8.2 77 525-601 20-125 (445)
99 COG1501 Alpha-glucosidases, fa 83.2 1.9 4.1E-05 54.1 6.2 87 576-683 323-416 (772)
100 cd06570 GH20_chitobiase-like_1 82.8 11 0.00024 42.3 11.6 123 525-669 16-144 (311)
101 PF10566 Glyco_hydro_97: Glyco 82.2 15 0.00032 40.6 11.8 65 522-594 27-93 (273)
102 cd06589 GH31 The enzymes of gl 81.1 8.5 0.00018 42.1 9.7 94 524-684 21-118 (265)
103 cd06563 GH20_chitobiase-like T 81.0 15 0.00032 42.1 11.9 125 525-669 16-162 (357)
104 KOG1065 Maltase glucoamylase a 80.9 9.4 0.0002 47.5 10.7 134 524-681 308-447 (805)
105 COG3280 TreY Maltooligosyl tre 80.3 1.8 4E-05 52.7 4.3 72 802-873 708-826 (889)
106 COG1640 MalQ 4-alpha-glucanotr 80.0 11 0.00023 45.2 10.5 35 774-808 392-426 (520)
107 PF00728 Glyco_hydro_20: Glyco 79.0 3 6.5E-05 47.1 5.5 136 525-678 16-162 (351)
108 PF03423 CBM_25: Carbohydrate 79.0 3 6.5E-05 37.8 4.4 35 363-397 52-86 (87)
109 cd06545 GH18_3CO4_chitinase Th 77.9 6.2 0.00013 42.7 7.3 81 573-698 45-130 (253)
110 cd06603 GH31_GANC_GANAB_alpha 77.5 5.3 0.00012 45.3 7.0 135 524-682 21-162 (339)
111 TIGR01370 cysRS possible cyste 76.7 7.8 0.00017 43.6 7.8 37 647-684 136-172 (315)
112 TIGR03849 arch_ComA phosphosul 75.9 7.8 0.00017 41.8 7.1 45 532-594 76-120 (237)
113 smart00812 Alpha_L_fucos Alpha 74.8 44 0.00096 38.7 13.5 141 529-706 83-235 (384)
114 PF03198 Glyco_hydro_72: Gluca 74.5 7.2 0.00016 43.6 6.6 56 526-602 52-107 (314)
115 cd02871 GH18_chitinase_D-like 72.7 12 0.00027 41.9 8.2 63 572-682 58-120 (312)
116 PF01301 Glyco_hydro_35: Glyco 71.0 3.7 8E-05 46.3 3.5 59 528-595 25-84 (319)
117 cd06565 GH20_GcnA-like Glycosy 70.9 13 0.00028 41.6 7.8 112 525-672 15-131 (301)
118 COG2730 BglC Endoglucanase [Ca 67.3 9 0.00019 44.7 5.8 59 529-595 75-137 (407)
119 COG3867 Arabinogalactan endo-1 67.2 22 0.00047 39.4 8.0 59 529-596 65-126 (403)
120 PF13380 CoA_binding_2: CoA bi 66.8 9.9 0.00021 36.3 5.0 44 526-593 65-108 (116)
121 PF01120 Alpha_L_fucos: Alpha- 66.2 62 0.0013 36.9 12.1 148 529-708 93-247 (346)
122 PLN02950 4-alpha-glucanotransf 66.1 18 0.00039 46.5 8.4 69 509-577 263-339 (909)
123 smart00632 Aamy_C Aamy_C domai 65.6 9.4 0.0002 33.9 4.3 23 854-876 5-28 (81)
124 PF02446 Glyco_hydro_77: 4-alp 65.2 5.6 0.00012 47.6 3.6 56 524-579 15-73 (496)
125 PF14701 hDGE_amylase: glucano 63.7 10 0.00022 44.3 5.1 55 643-699 360-422 (423)
126 PF00724 Oxidored_FMN: NADH:fl 62.8 31 0.00068 39.2 8.9 68 528-603 37-107 (341)
127 PRK15452 putative protease; Pr 61.9 43 0.00094 39.6 10.0 53 524-592 11-64 (443)
128 PLN03236 4-alpha-glucanotransf 59.3 18 0.00039 45.2 6.5 24 574-597 274-297 (745)
129 cd06547 GH85_ENGase Endo-beta- 58.5 11 0.00024 42.9 4.3 28 657-684 88-115 (339)
130 PRK11052 malQ 4-alpha-glucanot 58.1 24 0.00052 44.0 7.4 57 524-580 162-223 (695)
131 PF02679 ComA: (2R)-phospho-3- 57.7 22 0.00047 38.6 6.1 49 529-595 86-134 (244)
132 PF14883 GHL13: Hypothetical g 56.7 1.8E+02 0.0039 32.4 12.9 123 528-678 18-142 (294)
133 TIGR01210 conserved hypothetic 56.5 21 0.00046 40.1 6.1 60 530-597 117-178 (313)
134 PF09260 DUF1966: Domain of un 56.5 26 0.00057 32.2 5.6 41 851-894 1-44 (91)
135 PF02806 Alpha-amylase_C: Alph 55.6 17 0.00037 32.8 4.3 25 852-876 5-33 (95)
136 PRK15447 putative protease; Pr 55.0 38 0.00083 37.9 7.7 57 515-592 10-66 (301)
137 PRK07094 biotin synthase; Prov 54.8 20 0.00042 40.3 5.5 63 530-600 129-191 (323)
138 PLN03236 4-alpha-glucanotransf 54.0 21 0.00046 44.7 5.9 68 510-577 64-139 (745)
139 PRK14510 putative bifunctional 53.9 22 0.00048 47.2 6.5 68 509-576 726-800 (1221)
140 PF08821 CGGC: CGGC domain; I 53.7 44 0.00095 31.7 6.7 54 526-592 51-104 (107)
141 cd06546 GH18_CTS3_chitinase GH 53.2 1E+02 0.0023 33.6 10.6 49 653-701 93-145 (256)
142 PLN03059 beta-galactosidase; P 52.2 23 0.00049 44.8 5.8 60 527-594 59-118 (840)
143 PF13204 DUF4038: Protein of u 51.8 35 0.00076 37.9 6.8 70 525-598 28-110 (289)
144 PLN02950 4-alpha-glucanotransf 51.7 30 0.00065 44.5 6.9 24 574-597 461-484 (909)
145 PRK08207 coproporphyrinogen II 51.5 27 0.00059 41.8 6.2 63 530-600 269-332 (488)
146 PRK10076 pyruvate formate lyas 51.3 54 0.0012 34.8 7.8 61 526-592 144-211 (213)
147 TIGR00539 hemN_rel putative ox 50.0 27 0.00059 39.9 5.7 64 530-601 100-164 (360)
148 KOG2499 Beta-N-acetylhexosamin 49.6 64 0.0014 38.1 8.4 30 572-601 248-278 (542)
149 TIGR03356 BGL beta-galactosida 49.1 37 0.00079 40.0 6.7 57 526-595 53-115 (427)
150 TIGR00433 bioB biotin syntheta 49.0 38 0.00083 37.2 6.6 60 530-598 123-182 (296)
151 PRK08208 coproporphyrinogen II 48.6 27 0.00058 41.1 5.5 64 530-601 141-205 (430)
152 PRK06256 biotin synthase; Vali 48.5 26 0.00056 39.5 5.2 60 530-598 152-211 (336)
153 PRK05628 coproporphyrinogen II 48.0 31 0.00067 39.7 5.8 64 530-601 108-172 (375)
154 cd02857 CD_pullulan_degrading_ 47.5 9.8 0.00021 35.5 1.4 102 345-465 7-113 (116)
155 COG2342 Predicted extracellula 47.4 2.3E+02 0.005 31.5 11.7 123 526-684 29-151 (300)
156 cd02874 GH18_CFLE_spore_hydrol 46.9 39 0.00085 37.6 6.3 31 652-682 83-113 (313)
157 cd07937 DRE_TIM_PC_TC_5S Pyruv 45.9 2.7E+02 0.0057 30.7 12.5 96 528-697 92-188 (275)
158 PRK05660 HemN family oxidoredu 44.4 40 0.00087 38.9 6.0 64 530-601 107-171 (378)
159 cd00598 GH18_chitinase-like Th 43.8 82 0.0018 32.4 7.8 31 652-682 84-114 (210)
160 PF11852 DUF3372: Domain of un 42.9 48 0.001 34.0 5.5 37 827-863 43-90 (168)
161 COG4943 Predicted signal trans 42.5 28 0.00061 41.0 4.2 68 506-596 413-480 (524)
162 PF01373 Glyco_hydro_14: Glyco 42.3 25 0.00055 40.7 3.8 67 523-602 12-81 (402)
163 PRK13347 coproporphyrinogen II 41.7 42 0.00092 39.7 5.8 63 530-600 152-215 (453)
164 PLN02803 beta-amylase 41.4 63 0.0014 38.7 6.9 63 527-602 107-172 (548)
165 PRK09936 hypothetical protein; 41.0 75 0.0016 35.4 7.0 58 526-597 37-95 (296)
166 PRK05939 hypothetical protein; 40.7 69 0.0015 37.2 7.2 61 535-596 105-170 (397)
167 COG1306 Uncharacterized conser 40.5 1.1E+02 0.0024 34.1 8.1 140 525-682 75-219 (400)
168 PF07071 DUF1341: Protein of u 40.0 72 0.0016 33.6 6.3 44 529-590 137-180 (218)
169 PRK05904 coproporphyrinogen II 39.9 47 0.001 38.0 5.6 63 530-600 103-166 (353)
170 KOG0496 Beta-galactosidase [Ca 39.6 55 0.0012 40.1 6.1 59 529-595 51-109 (649)
171 PF01212 Beta_elim_lyase: Beta 38.6 29 0.00063 38.6 3.6 24 572-595 143-166 (290)
172 PRK13210 putative L-xylulose 5 38.2 61 0.0013 35.2 6.0 52 529-592 18-70 (284)
173 TIGR00538 hemN oxygen-independ 38.2 55 0.0012 38.8 6.0 64 530-601 151-215 (455)
174 PRK13561 putative diguanylate 37.8 46 0.001 41.0 5.5 72 524-599 531-616 (651)
175 cd07944 DRE_TIM_HOA_like 4-hyd 37.7 3E+02 0.0065 30.2 11.2 91 530-696 85-176 (266)
176 cd02929 TMADH_HD_FMN Trimethyl 37.7 2.2E+02 0.0047 32.8 10.6 29 573-603 82-110 (370)
177 cd04747 OYE_like_5_FMN Old yel 37.5 7E+02 0.015 28.8 14.5 70 527-603 33-105 (361)
178 PLN02801 beta-amylase 37.4 76 0.0016 37.8 6.7 65 525-602 35-102 (517)
179 PRK08446 coproporphyrinogen II 37.4 61 0.0013 37.0 6.0 63 530-600 98-161 (350)
180 TIGR03471 HpnJ hopanoid biosyn 37.1 62 0.0013 38.4 6.2 60 530-597 287-346 (472)
181 cd02931 ER_like_FMN Enoate red 37.0 3.2E+02 0.007 31.6 11.9 28 573-602 82-110 (382)
182 cd02803 OYE_like_FMN_family Ol 37.0 1E+02 0.0022 34.5 7.6 67 529-603 35-104 (327)
183 PF10438 Cyc-maltodext_C: Cycl 36.7 46 0.00099 29.8 3.8 25 853-877 6-33 (78)
184 PRK09249 coproporphyrinogen II 35.5 68 0.0015 38.0 6.2 64 530-601 151-215 (453)
185 cd01335 Radical_SAM Radical SA 35.0 57 0.0012 32.3 4.8 64 530-600 88-151 (204)
186 PRK07379 coproporphyrinogen II 34.6 62 0.0013 37.7 5.6 63 530-600 115-178 (400)
187 COG0041 PurE Phosphoribosylcar 34.5 1.1E+02 0.0023 31.0 6.3 52 524-594 13-64 (162)
188 cd04733 OYE_like_2_FMN Old yel 34.4 3.7E+02 0.008 30.4 11.7 29 573-603 81-109 (338)
189 PRK08114 cystathionine beta-ly 34.4 57 0.0012 38.0 5.1 71 523-596 112-188 (395)
190 TIGR01211 ELP3 histone acetylt 34.0 69 0.0015 38.7 5.9 63 530-600 206-268 (522)
191 TIGR03586 PseI pseudaminic aci 34.0 98 0.0021 35.2 6.8 70 522-592 12-95 (327)
192 PRK01060 endonuclease IV; Prov 33.7 73 0.0016 34.6 5.7 51 528-590 13-63 (281)
193 cd04735 OYE_like_4_FMN Old yel 33.7 2.6E+02 0.0056 32.0 10.3 29 573-603 77-105 (353)
194 COG2873 MET17 O-acetylhomoseri 33.6 72 0.0016 36.7 5.5 72 522-596 111-186 (426)
195 PRK08599 coproporphyrinogen II 33.5 67 0.0015 36.9 5.6 64 530-601 100-164 (377)
196 PF07555 NAGidase: beta-N-acet 33.3 4.4E+02 0.0096 29.7 11.7 106 511-678 3-110 (306)
197 cd04734 OYE_like_3_FMN Old yel 33.3 5.9E+02 0.013 29.0 13.1 69 527-603 33-104 (343)
198 PTZ00445 p36-lilke protein; Pr 33.3 93 0.002 33.2 6.0 60 527-592 29-96 (219)
199 PRK05967 cystathionine beta-ly 32.9 62 0.0013 37.7 5.1 29 569-597 161-189 (395)
200 PRK08195 4-hyroxy-2-oxovalerat 32.9 3.5E+02 0.0075 30.9 11.1 102 531-708 92-198 (337)
201 cd00609 AAT_like Aspartate ami 32.6 79 0.0017 34.7 5.8 54 531-598 123-176 (350)
202 PLN02905 beta-amylase 32.5 1.1E+02 0.0023 37.6 6.9 65 525-602 284-351 (702)
203 PRK13397 3-deoxy-7-phosphohept 32.5 4E+02 0.0087 29.2 10.9 63 524-600 133-195 (250)
204 PLN00197 beta-amylase; Provisi 32.4 1E+02 0.0023 37.1 6.8 65 525-602 125-192 (573)
205 cd07943 DRE_TIM_HOA 4-hydroxy- 32.2 4.8E+02 0.01 28.3 11.7 38 658-696 141-179 (263)
206 PRK06294 coproporphyrinogen II 32.0 79 0.0017 36.4 5.8 64 530-601 103-167 (370)
207 PRK09856 fructoselysine 3-epim 31.9 1E+02 0.0023 33.3 6.5 51 528-591 14-64 (275)
208 PLN02389 biotin synthase 31.9 1E+02 0.0022 35.8 6.6 60 530-598 178-237 (379)
209 cd05014 SIS_Kpsf KpsF-like pro 30.9 1.2E+02 0.0026 28.6 6.0 59 534-592 20-79 (128)
210 PLN02161 beta-amylase 30.9 1.2E+02 0.0027 36.2 7.0 65 525-602 115-182 (531)
211 COG0826 Collagenase and relate 30.9 1.3E+02 0.0027 34.6 7.1 57 523-594 13-69 (347)
212 COG2200 Rtn c-di-GMP phosphodi 30.1 77 0.0017 34.4 5.1 67 525-597 134-216 (256)
213 PLN02705 beta-amylase 30.0 1.1E+02 0.0024 37.3 6.5 65 525-602 266-333 (681)
214 cd03412 CbiK_N Anaerobic cobal 28.8 74 0.0016 30.8 4.2 60 526-585 55-125 (127)
215 TIGR02109 PQQ_syn_pqqE coenzym 28.7 2.2E+02 0.0047 32.3 8.7 61 530-597 95-155 (358)
216 TIGR03581 EF_0839 conserved hy 28.6 1.1E+02 0.0023 32.8 5.4 45 527-589 135-179 (236)
217 PRK10060 RNase II stability mo 28.5 55 0.0012 40.7 4.0 72 524-599 538-623 (663)
218 KOG1165 Casein kinase (serine/ 28.4 1.3E+02 0.0028 34.3 6.4 21 803-823 74-95 (449)
219 PRK12928 lipoyl synthase; Prov 28.0 1.9E+02 0.0041 32.2 7.8 67 523-597 215-281 (290)
220 PF03714 PUD: Bacterial pullan 28.0 1E+02 0.0022 28.7 4.8 38 174-215 45-82 (103)
221 cd00287 ribokinase_pfkB_like r 27.6 86 0.0019 31.5 4.7 51 534-597 44-94 (196)
222 KOG4175 Tryptophan synthase al 27.2 1.1E+02 0.0023 32.4 5.0 67 522-596 75-157 (268)
223 TIGR03217 4OH_2_O_val_ald 4-hy 26.9 5.4E+02 0.012 29.3 11.2 102 531-708 91-197 (333)
224 PRK11059 regulatory protein Cs 26.8 78 0.0017 39.1 4.9 75 524-599 530-615 (640)
225 smart00729 Elp3 Elongator prot 26.6 1.3E+02 0.0029 30.1 5.9 63 530-600 100-163 (216)
226 PF13407 Peripla_BP_4: Peripla 26.5 1.4E+02 0.0031 31.4 6.3 48 523-592 38-85 (257)
227 TIGR00542 hxl6Piso_put hexulos 26.1 1.2E+02 0.0027 32.9 5.8 53 528-591 17-69 (279)
228 KOG0259 Tyrosine aminotransfer 25.9 1.4E+02 0.003 34.6 6.0 80 523-602 133-247 (447)
229 PRK08134 O-acetylhomoserine am 25.6 92 0.002 36.7 5.0 81 507-596 103-188 (433)
230 PRK06582 coproporphyrinogen II 25.2 1.2E+02 0.0027 35.1 5.9 64 530-601 111-174 (390)
231 PRK09057 coproporphyrinogen II 25.2 1.2E+02 0.0025 35.1 5.6 62 531-600 105-166 (380)
232 PRK14012 cysteine desulfurase; 25.1 2.5E+02 0.0054 32.3 8.4 68 528-596 106-183 (404)
233 PRK01278 argD acetylornithine 25.1 1.5E+02 0.0033 33.8 6.6 59 525-600 164-222 (389)
234 PRK10605 N-ethylmaleimide redu 25.0 8.3E+02 0.018 28.1 12.4 29 573-603 78-106 (362)
235 cd04724 Tryptophan_synthase_al 24.6 1.4E+02 0.003 32.2 5.8 49 528-598 92-140 (242)
236 TIGR02666 moaA molybdenum cofa 24.5 1.8E+02 0.004 32.6 7.0 60 530-596 102-162 (334)
237 TIGR02006 IscS cysteine desulf 24.2 1.5E+02 0.0032 34.2 6.3 67 529-596 105-181 (402)
238 PRK05613 O-acetylhomoserine am 24.2 1.2E+02 0.0026 35.8 5.6 82 507-597 108-195 (437)
239 COG1874 LacA Beta-galactosidas 24.2 1.1E+02 0.0023 38.2 5.2 57 527-596 30-90 (673)
240 PRK05799 coproporphyrinogen II 24.1 1.3E+02 0.0028 34.5 5.7 63 530-600 99-162 (374)
241 PRK00164 moaA molybdenum cofac 24.1 1.9E+02 0.004 32.5 6.9 60 529-596 107-167 (331)
242 PF03644 Glyco_hydro_85: Glyco 24.1 1.5E+02 0.0032 33.5 6.0 19 578-596 46-64 (311)
243 COG0520 csdA Selenocysteine ly 24.0 67 0.0014 37.6 3.4 61 534-595 130-200 (405)
244 PRK13125 trpA tryptophan synth 24.0 1.6E+02 0.0034 31.8 6.1 52 527-597 88-139 (244)
245 cd02932 OYE_YqiM_FMN Old yello 24.0 6.4E+02 0.014 28.5 11.2 69 527-602 33-103 (336)
246 smart00052 EAL Putative diguan 23.6 1.4E+02 0.003 31.1 5.4 74 525-599 131-215 (241)
247 cd00945 Aldolase_Class_I Class 23.6 2.2E+02 0.0049 28.6 6.9 59 526-599 64-125 (201)
248 PLN02651 cysteine desulfurase 23.5 1.6E+02 0.0034 33.3 6.3 33 564-596 145-177 (364)
249 PRK08064 cystathionine beta-ly 23.5 1.5E+02 0.0033 34.2 6.2 31 566-596 147-177 (390)
250 TIGR03235 DNA_S_dndA cysteine 23.3 1.5E+02 0.0033 33.2 6.1 35 565-599 146-182 (353)
251 cd06543 GH18_PF-ChiA-like PF-C 22.9 5.4E+02 0.012 28.8 10.1 51 534-592 19-72 (294)
252 PRK09776 putative diguanylate 22.5 96 0.0021 40.5 4.8 70 524-599 971-1056(1092)
253 PRK05942 aspartate aminotransf 22.5 1.8E+02 0.0038 33.4 6.5 57 525-600 159-216 (394)
254 cd06450 DOPA_deC_like DOPA dec 22.4 1.3E+02 0.0028 33.4 5.2 31 569-599 160-190 (345)
255 PF01791 DeoC: DeoC/LacD famil 22.4 70 0.0015 34.2 2.9 57 530-598 79-136 (236)
256 TIGR03569 NeuB_NnaB N-acetylne 22.4 2.1E+02 0.0045 32.6 6.8 71 522-592 11-94 (329)
257 TIGR01212 radical SAM protein, 22.3 1.7E+02 0.0036 32.8 6.0 62 528-597 124-186 (302)
258 PF00682 HMGL-like: HMGL-like 22.3 3.5E+02 0.0075 28.7 8.3 103 526-696 66-175 (237)
259 PRK08898 coproporphyrinogen II 22.2 1.4E+02 0.0031 34.6 5.6 64 530-601 122-185 (394)
260 TIGR00262 trpA tryptophan synt 22.2 2E+02 0.0044 31.4 6.4 48 528-597 103-150 (256)
261 COG1809 (2R)-phospho-3-sulfola 21.8 1.9E+02 0.0042 31.0 5.8 48 528-593 91-138 (258)
262 PF00155 Aminotran_1_2: Aminot 21.7 1.5E+02 0.0032 33.2 5.5 66 523-602 129-196 (363)
263 PRK13384 delta-aminolevulinic 21.5 4E+02 0.0088 30.1 8.5 120 526-696 60-181 (322)
264 PRK09058 coproporphyrinogen II 21.5 1.6E+02 0.0034 34.9 5.9 64 530-601 163-227 (449)
265 PRK09997 hydroxypyruvate isome 21.3 2E+02 0.0044 30.8 6.3 20 529-548 17-36 (258)
266 smart00518 AP2Ec AP endonuclea 21.2 2.2E+02 0.0048 30.7 6.6 53 528-592 11-63 (273)
267 PRK05093 argD bifunctional N-s 21.2 2E+02 0.0043 33.1 6.6 60 525-601 173-232 (403)
268 PF07488 Glyco_hydro_67M: Glyc 21.1 3.3E+02 0.0072 30.7 7.7 105 524-681 54-159 (328)
269 COG1902 NemA NADH:flavin oxido 21.0 1.3E+03 0.029 26.6 13.9 68 527-602 39-109 (363)
270 PRK09028 cystathionine beta-ly 20.9 1.1E+02 0.0023 35.7 4.3 28 570-597 159-186 (394)
271 TIGR03234 OH-pyruv-isom hydrox 20.8 2.5E+02 0.0053 30.0 6.8 19 529-547 16-34 (254)
272 TIGR02026 BchE magnesium-proto 20.8 1.6E+02 0.0035 35.3 5.8 61 530-598 287-347 (497)
273 cd01299 Met_dep_hydrolase_A Me 20.7 3.5E+02 0.0076 30.1 8.3 62 525-593 118-179 (342)
274 PF12031 DUF3518: Domain of un 20.7 30 0.00066 37.4 -0.3 46 303-350 93-147 (257)
275 PRK11829 biofilm formation reg 20.6 1.4E+02 0.0031 36.7 5.5 75 524-599 536-621 (660)
276 cd07940 DRE_TIM_IPMS 2-isoprop 20.5 4.2E+02 0.0092 28.9 8.6 39 657-696 142-181 (268)
No 1
>PLN02784 alpha-amylase
Probab=100.00 E-value=5.9e-182 Score=1589.37 Aligned_cols=886 Identities=73% Similarity=1.253 Sum_probs=830.4
Q ss_pred CcceeccccchhhhhccCCCCCCCcccccccceeeccccCCCcccccccccccceecccCCCCCCCCCCCCCCCC---CC
Q 002585 1 MSTVTIRPLLPSYRRANLNFRDRTNILLKPNYINYSIKSAPNARRFCSFKKLQKITVSSSTSTSTSPATSTDTTP---VR 77 (904)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 77 (904)
||||||||||+||||+++.++++++ .+|+||||++++|+||++||||+....+.-. ..++++++|++ .+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 72 (894)
T PLN02784 1 MSTVCIESLLHHSGLEKNSKIGRGK--RSPSSLNLSLKSLTNGKSFCNFKMSVGVSST------TRRASSSDTALVETAQ 72 (894)
T ss_pred CCceeeHHHHhHHhhccccccCccc--ccccccccccccccCCcccccccCCCCcccc------cccccccceeeeeccc
Confidence 9999999999999999999977433 3499999999999999999999875544222 12467777877 56
Q ss_pred CCcceeeeeeeeeeeeeeCCeEEEEEEecCCCCceEEEEEecCCCceEEEeeeeecCCCCCCccCCCCCCCCCCcccccc
Q 002585 78 PGDVFFKETFPLKRTHAVEGKMFVRLQKGKDEKNWQLSVGCNIPGKWILHWGVSFVGDNGSEWDQPPKKMRPPGSVSIKD 157 (904)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~v~~~t~~~~~~~lHWgv~~~~~~~~eW~~pp~~~~P~~s~~~~~ 157 (904)
..+++|+|+|++.++|+|||+|+|+|+ +++++|++|+|+||+|++|||||||++.+++++||++||++||||||+.+++
T Consensus 73 ~~~v~~kk~F~v~~~e~ve~~~~v~l~-~~~~g~~kv~v~t~~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~~~~~ 151 (894)
T PLN02784 73 SDDVFFKETFPVKRTEKVEGKIYVRLE-EKNEKNWKLSVGCSIPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSIAIKD 151 (894)
T ss_pred cccceeeeeeeecccceecceeEEEEE-ccCCCcEEEEEEecCCCCeEEEEeEecCCCCCccccCCCcccCCCCcEEecC
Confidence 889999999999999999999999997 7899999999999999999999999999999999999999999999999999
Q ss_pred ceeccccccccCCCceeEEEEeecCCCCceEEEEEEEeCCcchhhhcCCcceeEeCCcccccCCCccccccccccCcchH
Q 002585 158 YAIETPLKKLAEGDVFDQVNIDFDTRSDIAAINFVLKDEETGAWYQHRGRDFKVPLVDYLQHDGNVIGTKSTFGLWPGAL 237 (904)
Q Consensus 158 ~a~~T~~~~~~~~~~~~~~~i~~~~~~~~~~~~Fvl~~~~~~~W~~~~g~df~v~l~~~~~~~~~~~~~~~~~~~w~~~~ 237 (904)
+||||||++++.++..+++.|+|+++++++||+||||++++|+||||||+|||||||++++++.+++|+++++.+|||.|
T Consensus 152 ~A~eT~f~~~s~~~~~~~v~iel~l~~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~~~~~~~~~~~~~~~~~~~~~l 231 (894)
T PLN02784 152 YAIETPLKKSSEGDSFYEVTIDLDPNSSIAAINFVLKDEETGAWYQHKGRDFKVPLVDDLPDGGNNVGAKKGFGIWPGAL 231 (894)
T ss_pred eEEeccccccccCCcceeEEEEEeeCCceeeEEEEEEeCCCCchhhcCCccEEEecccccccccceeehhhhcCcCcCcc
Confidence 99999999999888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCCCCCCCCcccccccccccchhhhcccccchhhhhccceeEEEEeecCCCCceEEEEEcCCCCCeEE
Q 002585 238 GQLSKMILKADTSQSGIQDSSSESCELKQENKHLEGFYEELPIVKEIIIENTVSVSVRKCPETAKTLLNLETDLTGDVVV 317 (904)
Q Consensus 238 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~v~~~~~~~~~~~~v~~~td~~~~~vl 317 (904)
++||++++|+|+++++.+++++.+.++.+..++|++||||+||+|++.++|++.|+|+||++++|++|||+||+|+|+||
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~v~v~~~~~~~k~~v~v~td~~~~vvl 311 (894)
T PLN02784 232 GQLSNILLKDEGSPSKEQDKSSSELDSAAERKGLKGFYEEMPIVKRVAVDNSVTVTVRKCPETAKNLVYLETDLPGDVVV 311 (894)
T ss_pred ccccchhccCCCCCcccCCCcccccccccccccchhhhhccceeeEEEecceEEEEEecCCCCCceEEEEEcCCCCCEEE
Confidence 99999999999999999998888899999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeecCCCCCcccCCCCCCCCcceeechhhcccCcccCCCCcceeEEEecCccceeEEEEEeCCccccccCCcceEEeC
Q 002585 318 HWGVCRDDSKNWEIPAEPYPPETIVFKNKALRTLLQPKEGGKGCSRLFTVDEEFAGFLFVLKLNENTWLKCMENDFYIPL 397 (904)
Q Consensus 318 HWgv~~~~~~~W~~pp~~~~p~~~~~~~~a~~Tpf~~~~~~~~~~~~~~l~~~~~g~~fVl~~~~~~W~k~~g~df~i~l 397 (904)
||||||++++||++||++++|+||+++++||||||++.+++.++++.|+|+.+|.||+|||++++++||||+|+||||||
T Consensus 312 HWgV~k~~~~eW~~Pp~~~~P~~sv~~~kA~eT~~~~~~~~~~~~~~~~ld~~~~g~~FVLk~~~g~W~~~~G~DF~Ipl 391 (894)
T PLN02784 312 HWGVCKDGAKTWEIPPEPHPPETSLFKNKALQTMLQQKDDGNGSSGLFSLDGELEGLLFVLKLNEGTWLRCNGNDFYVPL 391 (894)
T ss_pred EeEeccCCCCcccCCCCCCCCCcceecccccccccccccCCCcceEEEecCCCeeEEEEEEECCCCchhhcCCccEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999966899999999999999
Q ss_pred CCCCCCCC---cccccccccCCCcccccccccchhhhhHHHHhhhcccCcccchhhcccchhhhhhhhHHHhhhhhhhhh
Q 002585 398 TSSSCLPA---ESVQEMLIPGKAEEATQEVSQTAYTAGIIKEIRNLVSDFSSDISRKTKSKEAQKSILLEIEKLAAEAYS 474 (904)
Q Consensus 398 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~d~~s~~~~~~~~~~~q~tv~~~~~~~~a~~yq 474 (904)
..+++.++ +.|+|.. ..+++++++.++|+++||++||++++|++|+++++++.++.|.++++++++++|.+|.
T Consensus 392 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (894)
T PLN02784 392 LTSSSLPTQTEQGQSEGK----TAKTNKEVSKSAYTDGIIGEIRNLVIDISSEKGQKTKTKELQESILQEIEKLAAEAYS 467 (894)
T ss_pred Cchhcccccccccccccc----cccccccccccccccchhhhhHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhhhhhe
Confidence 99988776 4455543 6688899999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccchhcccc-CCCCCCCCCCCCCCCceeeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCC
Q 002585 475 IFRTTAPTFFEEAAVELE-ESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV 553 (904)
Q Consensus 475 If~~~~drf~~~~~~~~~-~~~p~~r~~~~~~~~y~i~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~ 553 (904)
||+.+++.|.+.++.+.. ..+|+.....+.+.+|++++|+|.|+++.+|+++++|+++|+||++||||+|||+|++++.
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVmlQgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~ 547 (894)
T PLN02784 468 IFRSTIPTFSEESVLEAERIQKPPIKICSGTGSGFEILCQGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESV 547 (894)
T ss_pred eeccCCCCcChhhhhcchhhcCCcccccccccCCceEEEEeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCCCCCC
Confidence 999999999998888777 4678877888888999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCC
Q 002585 554 SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQG 633 (904)
Q Consensus 554 s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~ 633 (904)
++|||++.|||.+|++|||.+||++||++||++||+||+|+|+||++..+...+|.|+.|.+.++|.+..+..+.+.|.+
T Consensus 548 s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~G 627 (894)
T PLN02784 548 SPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGRLNWDDRAVVADDPHFQG 627 (894)
T ss_pred CCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccccccccCCCCcccccCCeecCCCCcccCCCcccCC
Confidence 99999999999999999999999999999999999999999999999887666788888888789988877777778888
Q ss_pred CCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEeccccccccchHHHHHHhcCCCEEEEeecCCCCccc
Q 002585 634 RGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYTY 713 (904)
Q Consensus 634 ~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~~f~~~~~~~~~p~~liGE~w~~~~~l~ 713 (904)
.++++++.+|.++||||+.||+||++|++|++||++++||||||||+|++++..|+++++++.+|.|+|||+|++..|..
T Consensus 628 rG~~~sgddf~~lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVKgf~~~Fvkeyv~a~kp~F~VGEyWd~~~~~~ 707 (894)
T PLN02784 628 RGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGFWGGYVKDYMEASEPYFAVGEYWDSLSYTY 707 (894)
T ss_pred cCCcCcccccCcCCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccCCCCHHHHHHHHhccCCcEEEEEecccccccc
Confidence 88888888899999999999999999999999999899999999999999999999999999988899999999977777
Q ss_pred ccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecccCCCCCccC
Q 002585 714 GEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQG 793 (904)
Q Consensus 714 g~mny~~~~~~~~i~~~l~~~~g~~~~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vnflenHDt~R~~t 793 (904)
++|+|+++.+++.+.+|+...++..++|||++++.|++++.++++|++.+..++++++.+.+|..||+|++||||.+.+.
T Consensus 708 g~~~Ynqd~~rq~l~dwi~~tgg~~saFDfplk~~L~~A~~~~e~wrL~d~~g~~~glv~~~P~~AVTFVDNHDTg~~Q~ 787 (894)
T PLN02784 708 GEMDYNQDAHRQRIVDWINATNGTAGAFDVTTKGILHSALERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQG 787 (894)
T ss_pred CccccCchhHHHHHHHHHHhCCCceeeechhHHHHHHHHHhccchhhhhhccCCCCCeeccccCceEEEecCCCCCCCcc
Confidence 89999999999999999998888889999999999999998888899988888888999999999999999999999988
Q ss_pred CCCCChhHHHHHHHHHHhCCCeeeeecCChhHHHHHHHHHHHHHHHhCccccCCCeeEEeeCCCEEEEEECCEEEEEEeC
Q 002585 794 HWRFPGGREMQGYAYILTHPGTPSVFYDHIFSHYRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGP 873 (904)
Q Consensus 794 ~~~~~~~~~klA~allltlPGiP~IYyGdE~~Wl~~~~r~Li~lRk~~paL~~G~~~~l~~~~~v~a~~r~~~vlvvlnn 873 (904)
.+.++..+..+|||+|||.||+|||||||.|+.+.+.|++||.+||++...++..++++.++.++|+...+++++|.|++
T Consensus 788 ~w~~p~~k~~~AYAyILthpG~PcVFy~h~y~~~~~~I~~Li~iRk~~gI~~~S~v~i~~a~~~~Y~a~i~~k~~~kiG~ 867 (894)
T PLN02784 788 HWRFPEGKEMQGYAYILTHPGTPAVFYDHIFSHYHPEIASLISLRNRQKIHCRSEVKITKAERDVYAAIIDEKVAMKIGP 867 (894)
T ss_pred cCCCCccchhhHHHHHHcCCCcceEEehhhhhhhHHHHHHHHHHHHHcCCCCCCceeEEEecCCcEEEEeCCeeEEEECC
Confidence 88777888899999999999999999999985578889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCeEEEEcCCCeEEecc
Q 002585 874 GHYEPPSGSQNWSFVTEGRDYKSNLA 899 (904)
Q Consensus 874 ~~~~~~~g~~~~~~~~~g~~y~vw~~ 899 (904)
.+..|+.++.+|+++++|.+|+||..
T Consensus 868 ~~~~p~~~~~~~~~~~sG~~yavW~k 893 (894)
T PLN02784 868 GHYEPPNGPQNWSVALEGQDYKVWET 893 (894)
T ss_pred cccCCCCCCCceEEEEecCCeEEEeC
Confidence 99888666678999999999999985
No 2
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=3.3e-70 Score=623.16 Aligned_cols=390 Identities=45% Similarity=0.928 Sum_probs=334.3
Q ss_pred eeeeecccccC-CCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcC-CCCCCHHHHHHHHHHHHHc
Q 002585 509 EILCQGFNWES-HKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-SRYGNIDELKDVVNKFHDV 586 (904)
Q Consensus 509 ~i~~~~F~Wd~-~~~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~ID-p~lGt~edlk~LV~aAH~~ 586 (904)
++++|+|.|++ ...||++++|++|||||++||||+|||+|++++.++|||++.|||+|| ++|||.+|||+||++||++
T Consensus 25 ~v~~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~ 104 (428)
T PLN00196 25 QVLFQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGK 104 (428)
T ss_pred CEEEEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHC
Confidence 68999999998 456899999999999999999999999999999999999999999999 5999999999999999999
Q ss_pred CCEEEEEeecccccccCCCCCCCcccCCC-----CCCCCCCCccCCCCCCC-CCCCCCCCCCCCCCCccCCCCHHHHHHH
Q 002585 587 GMKILGDVVLNHRCAHYQNQNGVWNIFGG-----RLNWDDRAVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRKDI 660 (904)
Q Consensus 587 GIkVILD~V~NHt~~~~~~~~g~~~~y~g-----~~~W~~~~~~~~~~~f~-~~~~~~~~~~~~~lpdlN~~np~Vr~~i 660 (904)
||+||+|+|+||++.++....+.|..|.+ ..+|+......+...|. +.+++.+++++.++||||++||+||++|
T Consensus 105 GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l 184 (428)
T PLN00196 105 GVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQREL 184 (428)
T ss_pred CCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHH
Confidence 99999999999999888654454443322 25665443333333332 3456778888999999999999999999
Q ss_pred HHHHHHHHhccCccEEEeccccccccchHHHHHHhcCCCEEEEeecCCCCc-ccccCCCCchHHHHHHHHHHhhcCCC--
Q 002585 661 KEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSY-TYGEMDHNQDAHRQRIIDWINAASGT-- 737 (904)
Q Consensus 661 ~~~l~~Wi~e~GIDGfRlD~a~~~~~~f~~~~~~~~~p~~liGE~w~~~~~-l~g~mny~~~~~~~~i~~~l~~~~g~-- 737 (904)
+++++||++++||||||+|+|++++.+|+++++++.+|.|+|||+|++.+| ..+...|.++.+++.+.+|+...++.
T Consensus 185 ~~~~~wl~~~~GiDG~RlD~ak~~~~~f~~~~v~~~~p~f~VGE~W~~~~~~~~~~~~~~~~~~r~~l~~~l~~~g~~~~ 264 (428)
T PLN00196 185 IGWLLWLKSDIGFDAWRLDFAKGYSAEVAKVYIDGTEPSFAVAEIWTSMAYGGDGKPEYDQNAHRQELVNWVDRVGGAAS 264 (428)
T ss_pred HHHHHHHhhCCCCCEEEeehhhhCCHHHHHHHHHccCCcEEEEEEeccccccccCCccccchhhHHHHHHHHHhcCCccC
Confidence 999999988899999999999999999999999888888999999998654 35668888888899999999866543
Q ss_pred -cccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecccCCCCCccCCCCCChhHHHHHHHHHHhCCCee
Q 002585 738 -AGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTP 816 (904)
Q Consensus 738 -~~~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vnflenHDt~R~~t~~~~~~~~~klA~allltlPGiP 816 (904)
.++|||++...+..++. ++.+++.+......++...+|..+|||++||||.|+++.+.....+.++|+|+|||+||+|
T Consensus 265 ~~~~fDF~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r~~~~~~~~~~~~~lAyA~iLT~pG~P 343 (428)
T PLN00196 265 PATVFDFTTKGILNVAVE-GELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGSTQHMWPFPSDKVMQGYAYILTHPGNP 343 (428)
T ss_pred cceeecccchHHHHHHhc-CCchhhhhhcccCcchhhcChhhceeeccCCCCccccccCCCccchHHHHHHHHHcCCCcc
Confidence 35899999876666654 3466766665555677888999999999999999999988777788899999999999999
Q ss_pred eeecCChhHH-HHHHHHHHHHHHHhCccccCCCeeEEeeCCCEEEEEECCEEEEEEeCCCCCCCCCCCCeEEEEcCCCeE
Q 002585 817 SVFYDHIFSH-YRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWSFVTEGRDYK 895 (904)
Q Consensus 817 ~IYyGdE~~W-l~~~~r~Li~lRk~~paL~~G~~~~l~~~~~v~a~~r~~~vlvvlnn~~~~~~~g~~~~~~~~~g~~y~ 895 (904)
|||||+-|+| +.+.|++|+++||++++++.|+++++.+++++|++.|+++++|+||+.-....-.+.+|+++++|.+|+
T Consensus 344 ~IyYg~~~~~~~~~~i~~Li~~Rk~~~~~~~g~~~~~~a~~d~yv~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~ 423 (428)
T PLN00196 344 CIFYDHFFDWGLKEEIAALVSIRNRNGITPTSELRIMEADADLYLAEIDGKVIVKIGSRYDVSHLIPEGFQVVAHGNGYA 423 (428)
T ss_pred eEeeCCCcCccHHHHHHHHHHHHHhCCCcCCccEEEEEecCCEEEEEECCEEEEEECCCCCccccCcccceEEEecCCeE
Confidence 9999999999 999999999999999999999999999999999999999999999995322211124599999999999
Q ss_pred Eecc
Q 002585 896 SNLA 899 (904)
Q Consensus 896 vw~~ 899 (904)
||+.
T Consensus 424 ~w~~ 427 (428)
T PLN00196 424 VWEK 427 (428)
T ss_pred EEec
Confidence 9974
No 3
>PLN02361 alpha-amylase
Probab=100.00 E-value=1.1e-69 Score=612.19 Aligned_cols=386 Identities=52% Similarity=1.041 Sum_probs=344.2
Q ss_pred CceeeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHc
Q 002585 507 GFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDV 586 (904)
Q Consensus 507 ~y~i~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~ 586 (904)
+.++++|+|.|++++ +.++++|+++||||++||||+|||+|++++.++|||++.|||.+||+|||.+||++||++||++
T Consensus 10 ~~~v~lQ~F~W~~~~-~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~ 88 (401)
T PLN02361 10 GREILLQAFNWESHK-HDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQY 88 (401)
T ss_pred CCcEEEEEEeccCCc-cHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHc
Confidence 457999999999874 4599999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeecccccccCCCCCCCcccCCCC-CCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHH
Q 002585 587 GMKILGDVVLNHRCAHYQNQNGVWNIFGGR-LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLC 665 (904)
Q Consensus 587 GIkVILD~V~NHt~~~~~~~~g~~~~y~g~-~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~ 665 (904)
||+||+|+|+||++.......+.|+.|.+. .+|+...+..+. .+.+++..+.++.++||||++||+||++++++++
T Consensus 89 gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~---~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~ 165 (401)
T PLN02361 89 NVRAMADIVINHRVGTTQGHGGMYNRYDGIPLPWDEHAVTSCT---GGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLI 165 (401)
T ss_pred CCEEEEEEccccccCCCCCCCCCcccCCCCcCCCCcccccccc---CCCCCccCCCCCccCCccCCCCHHHHHHHHHHHH
Confidence 999999999999987666677778777763 567654332221 1234455667789999999999999999999999
Q ss_pred HHHhccCccEEEeccccccccchHHHHHHhcCCCEEEEeecCCCCcc--cccCCCCchHHHHHHHHHHhhcCCCcccccc
Q 002585 666 WLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYT--YGEMDHNQDAHRQRIIDWINAASGTAGAFDV 743 (904)
Q Consensus 666 ~Wi~e~GIDGfRlD~a~~~~~~f~~~~~~~~~p~~liGE~w~~~~~l--~g~mny~~~~~~~~i~~~l~~~~g~~~~fdf 743 (904)
||++++||||||+|++++++.+|+++++++.+|.|+|||+|++..+. ++.++|+++.+++.+.+|+...++..++|||
T Consensus 166 wl~~~~GiDGfRlDavk~~~~~f~~~~~~~~~p~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~~~~~~~~~~fDF 245 (401)
T PLN02361 166 WLRNDVGFQDFRFDFAKGYSAKFVKEYIEAAKPLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDGTGGLSAAFDF 245 (401)
T ss_pred HHHhcCCCCEEEEeccccCCHHHHHHHHHhhCCeEEEEEEecCCCcCCcccccchhhhhHHHHHHHHHHhcCCcceeecH
Confidence 88877999999999999999999999999988889999999874432 4569999999999999999987778899999
Q ss_pred hhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecccCCCCCccCCCCCChhHHHHHHHHHHhCCCeeeeecCCh
Q 002585 744 TTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHI 823 (904)
Q Consensus 744 ~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vnflenHDt~R~~t~~~~~~~~~klA~allltlPGiP~IYyGdE 823 (904)
+++..+++++ .++++++.+..++.+++.+.+|.++|+|++||||+|+++.+.++..+.++|+|+|||+||+||||||+-
T Consensus 246 ~l~~~l~~a~-~~~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~~~~~~~~~~~~~~AyA~iLT~pG~P~Vyyg~~ 324 (401)
T PLN02361 246 TTKGILQEAV-KGQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWPFPSDHIMEGYAYILTHPGIPTVFYDHF 324 (401)
T ss_pred HHHHHHHHHH-hhhHHHHhhhhcCCcchhhcChhhceEecccCcCcchhhccCCchHHHHHHHHHHHCCCCcCeEeeccc
Confidence 9999999998 456788888777777888899999999999999999999988888899999999999999999999999
Q ss_pred hHH---HHHHHHHHHHHHHhCccccCCCeeEEeeCCCEEEEEECCEEEEEEeCCCCCCCCCCCCeEEEEcCCCeEEecc
Q 002585 824 FSH---YRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWSFVTEGRDYKSNLA 899 (904)
Q Consensus 824 ~~W---l~~~~r~Li~lRk~~paL~~G~~~~l~~~~~v~a~~r~~~vlvvlnn~~~~~~~g~~~~~~~~~g~~y~vw~~ 899 (904)
|+| ++++|++|++|||+++++++|+++++.+++++|+...+++++|.|+.....| .+. +|+++++|.+|+||+.
T Consensus 325 ~~~~~~~~~~I~~Li~lRk~~~~~~~s~~~i~~a~~~~y~a~i~~~~~~k~g~~~~~p-~~~-~~~~~~~g~~~~~w~~ 401 (401)
T PLN02361 325 YDWGGSIHDQIVKLIDIRKRQDIHSRSSIRILEAQSNLYSAIIDEKLCMKIGDGSWCP-SGR-EWTLATSGHRYAVWHK 401 (401)
T ss_pred cCCChHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCeEEEEECCeEEEEecCCCCCC-CCC-CceEEEecCceEEeeC
Confidence 998 9999999999999999999999999999999999999999999999987777 333 5999999999999974
No 4
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=2.6e-65 Score=608.55 Aligned_cols=436 Identities=16% Similarity=0.200 Sum_probs=307.9
Q ss_pred eEEeCCCCCCCCCcccccccccCCCcccccccccchhhhhHHHHhhhcccCcccch-hhcccchhhhhhhhHHHhhhh--
Q 002585 393 FYIPLTSSSCLPAESVQEMLIPGKAEEATQEVSQTAYTAGIIKEIRNLVSDFSSDI-SRKTKSKEAQKSILLEIEKLA-- 469 (904)
Q Consensus 393 f~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~d~~s~~-~~~~~~~~~q~tv~~~~~~~~-- 469 (904)
-.++|...+.. +..+.|.+ +.+........+|+|.|+.+-..+..+..+.. ....+...+|.+.+ .+.|
T Consensus 47 ~~~~m~~~~~~---~~~~~~~~--~~~~~~~~~~~~Y~F~l~~~~~~~~~~~~g~~~~~~~~~~~f~~~~~---~~~P~W 118 (598)
T PRK10785 47 YLLPMEKQRSQ---PQVTAWRA--SLPLNSGQPRRRYSFKLLWHDRQRWFTPQGFSRRPPARLEQFAVDVP---DQGPQW 118 (598)
T ss_pred EEEEeEEeecC---CCceEEEE--EEEcCCCCceEEEEEEEEeCCEEEEEcCCceeeccCCCccceEeeCC---CCCCch
Confidence 36788766554 23345654 44443345678899988632222222222110 11112345676655 3334
Q ss_pred ---hhhhhcccccccccccchhccccCCCC-------CC----CCCCCCCCCceeeeecccccCCCCCCCHHHHHHHHHH
Q 002585 470 ---AEAYSIFRTTAPTFFEEAAVELEESKP-------PA----KISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATE 535 (904)
Q Consensus 470 ---a~~yqIf~~~~drf~~~~~~~~~~~~p-------~~----r~~~~~~~~y~i~~~~F~Wd~~~~GGdl~GI~ekLdY 535 (904)
+++||||| |||++++..+.. +.. .. ..|.. ...++.....| +||||+||++||||
T Consensus 119 ~~~~v~YqIfp---DRF~ng~~~n~~-~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~f------~GGDl~GI~~kLdY 187 (598)
T PRK10785 119 VADQVFYQIFP---DRFARSLPREAV-QDHVYYHHAAGQEIILRDWDE-PVTAQAGGSTF------YGGDLDGISEKLPY 187 (598)
T ss_pred hhcCEEEEech---hhhcCCCcccCc-cCCceeeccCCCcccccCcCC-Ccccccccccc------cCcCHHHHHHHHHH
Confidence 99999999 999986543221 000 00 11211 11111112233 49999999999999
Q ss_pred HHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCC-------C
Q 002585 536 LSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQN-------G 608 (904)
Q Consensus 536 Lk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~~~~~~~-------g 608 (904)
||+||||+|||+|||+++++|||++.||++|||+|||+++|++||++||++|||||||+|+||||.+|++.+ |
T Consensus 188 L~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~~f~~~~~~~~g 267 (598)
T PRK10785 188 LKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGG 267 (598)
T ss_pred HHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCHHHHHhhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999987532 1
Q ss_pred CcccCCCC-CCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHH----HHHHHHhc-cCccEEEecccc
Q 002585 609 VWNIFGGR-LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKE----WLCWLRNE-IGYDGWRLDFVR 682 (904)
Q Consensus 609 ~~~~y~g~-~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~----~l~~Wi~e-~GIDGfRlD~a~ 682 (904)
.|..-+++ .+|+ .|...+.+.+|+++..||+||++||+||++|++ ++++|+++ +||||||||+|+
T Consensus 268 a~~~~~spy~dwf---------~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~ 338 (598)
T PRK10785 268 ACHHPDSPWRDWY---------SFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVH 338 (598)
T ss_pred cccCCCCCcceee---------EECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHh
Confidence 11111111 2343 223344567788889999999999999999995 89999976 899999999999
Q ss_pred ccc--------cchHHHHHHh---cCCC-EEEEeecCCC-Cc-----ccccCCCCchHHHHHHHHHHhhcCCCcccccch
Q 002585 683 GFW--------GGYVKDYLEA---TEPY-FAVGEYWDSL-SY-----TYGEMDHNQDAHRQRIIDWINAASGTAGAFDVT 744 (904)
Q Consensus 683 ~~~--------~~f~~~~~~~---~~p~-~liGE~w~~~-~~-----l~g~mny~~~~~~~~i~~~l~~~~g~~~~fdf~ 744 (904)
+++ .+||+++.++ .+|+ ++|||+|.+. .| .++.|||.. +...+..|+.............
T Consensus 339 ~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~~~~l~~~~~d~~mny~~--f~~~~~~~~~~~~~~~~~~~~~ 416 (598)
T PRK10785 339 MLGEGGGARNNLQHVAGITQAAKEENPEAYVLGEHFGDARQWLQADVEDAAMNYRG--FAFPLRAFLANTDIAYHPQQID 416 (598)
T ss_pred HhccccCccccHHHHHHHHHHHHhhCCCeEEEEeccCChhhhccCccccccccchh--hhhHHHHHhhccccccCccCCC
Confidence 885 3688876554 4677 8999999864 23 345688732 3456667765321000000000
Q ss_pred hhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCC----cceeecccCCCCCccCCCCCChhHHHHHHHHHHhCCCeeeeec
Q 002585 745 TKGILHSALDRCEYWRLSDEKGKPPGVVGWWPS----RAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSVFY 820 (904)
Q Consensus 745 l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~----~~vnflenHDt~R~~t~~~~~~~~~klA~allltlPGiP~IYy 820 (904)
. ..+...+ ..+. ..+|. .++||++|||++|+.+.++++..++++|++++||+||+|||||
T Consensus 417 ~-~~~~~~l-----~~~~----------~~~~~~~~~~~~n~l~nHD~~R~~~~~~~~~~~~kla~~ll~t~pGiP~IYY 480 (598)
T PRK10785 417 A-QTCAAWM-----DEYR----------AGLPHQQQLRQFNQLDSHDTARFKTLLGGDKARMPLALVWLFTWPGVPCIYY 480 (598)
T ss_pred H-HHHHHHH-----HHHH----------HhCCHHHHHHhhhccCCCccchhhhhhCCCHHHHHHHHHHHHhCCCCcEEEe
Confidence 0 0111110 0110 11222 3579999999999999987778899999999999999999999
Q ss_pred CChh--------------HH--------HHHHHHHHHHHHHhCccccCCCeeEEeeCCCEEEEEE---CCEEEEEEeCC
Q 002585 821 DHIF--------------SH--------YRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAII---DEKVAMKLGPG 874 (904)
Q Consensus 821 GdE~--------------~W--------l~~~~r~Li~lRk~~paL~~G~~~~l~~~~~v~a~~r---~~~vlvvlnn~ 874 (904)
|||+ +| ++++||+||+|||++|+|+.|+++.+..++++++|.| +++++|++|++
T Consensus 481 GdE~G~~g~~dp~~R~~m~W~~~~~~~~l~~~~r~Li~lRk~~~aL~~G~~~~l~~~~~v~af~R~~~~~~vlVviN~s 559 (598)
T PRK10785 481 GDEVGLDGGNDPFCRKPFPWDEAKQDGALLALYQRMIALRKKSQALRRGGCQVLYAEGNVVVFARVLQQQRVLVAINRG 559 (598)
T ss_pred eeeccccCCCCCCccCCcCCCcccCchHHHHHHHHHHHHHhhCcccccCcEEEEEeCCCEEEEEEECCCCEEEEEEECC
Confidence 9995 36 8999999999999999999999999999999999998 67899999988
No 5
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=1.5e-57 Score=530.91 Aligned_cols=349 Identities=27% Similarity=0.467 Sum_probs=265.6
Q ss_pred eeeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCC---CCCCCcccCC---------CcCCCCCCHHHH
Q 002585 509 EILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVS---PEGYMPRDLY---------NLSSRYGNIDEL 576 (904)
Q Consensus 509 ~i~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s---~hGYd~~Dy~---------~IDp~lGt~edl 576 (904)
++++|+|.|++...|.+++||++|||||++||||+|||+||+++.+ +|||++.||| .|||+|||++||
T Consensus 4 ~~~~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl 83 (479)
T PRK09441 4 GTMMQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEEL 83 (479)
T ss_pred ceEEEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHH
Confidence 5899999999887777888999999999999999999999999874 6999999999 799999999999
Q ss_pred HHHHHHHHHcCCEEEEEeecccccccCC--CC-------CCCcccCCCC---CCCCCCCcc-----C-----CCCCCCCC
Q 002585 577 KDVVNKFHDVGMKILGDVVLNHRCAHYQ--NQ-------NGVWNIFGGR---LNWDDRAVV-----A-----DDPHFQGR 634 (904)
Q Consensus 577 k~LV~aAH~~GIkVILD~V~NHt~~~~~--~~-------~g~~~~y~g~---~~W~~~~~~-----~-----~~~~f~~~ 634 (904)
|+||++||++||+||+|+|+||++..+. +. ++..+.|... ..|.....+ . ...+|.+.
T Consensus 84 ~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (479)
T PRK09441 84 LNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGT 163 (479)
T ss_pred HHHHHHHHHCCCEEEEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCc
Confidence 9999999999999999999999996432 21 1111111100 111110000 0 00001100
Q ss_pred ---------------CCCCCC----------CCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEeccccccccchH
Q 002585 635 ---------------GNKSSG----------DNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYV 689 (904)
Q Consensus 635 ---------------~~~~~~----------~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~~f~ 689 (904)
....+| +.+..+||||++||+||++|++++++|++++||||||+|+|++++.+||
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~~~f~ 243 (479)
T PRK09441 164 DYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHIDAWFI 243 (479)
T ss_pred ccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCCHHHH
Confidence 000111 1345699999999999999999999999779999999999999999999
Q ss_pred HHHHHhc----CCC-EEEEeecCCCCcccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhh
Q 002585 690 KDYLEAT----EPY-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDE 764 (904)
Q Consensus 690 ~~~~~~~----~p~-~liGE~w~~~~~l~g~mny~~~~~~~~i~~~l~~~~g~~~~fdf~l~~~l~~~l~~~~~~~l~~~ 764 (904)
+++++++ .|+ |++||+|.+. .+.+..|+...+...++|||++...+..++..+....+...
T Consensus 244 ~~~~~~~~~~~~~~~~~vGE~~~~~--------------~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~~~~~~~~l~~~ 309 (479)
T PRK09441 244 KEWIEHVREVAGKDLFIVGEYWSHD--------------VDKLQDYLEQVEGKTDLFDVPLHYNFHEASKQGRDYDMRNI 309 (479)
T ss_pred HHHHHHHHHhcCCCeEEEEeecCCC--------------hHHHHHHHHhcCCCceEecHHHHHHHHHHHhcCCccchHhh
Confidence 9988774 245 8999999763 23456677654445679999999888888765433333332
Q ss_pred cCCCCCCcCCCCCcceeecccCCCCCccCCCCCChh-HHHHHHHHHHhCC-CeeeeecCChhHH--------HHHHHHHH
Q 002585 765 KGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGG-REMQGYAYILTHP-GTPSVFYDHIFSH--------YRQEIEAL 834 (904)
Q Consensus 765 ~~~~~~~~~~~P~~~vnflenHDt~R~~t~~~~~~~-~~klA~allltlP-GiP~IYyGdE~~W--------l~~~~r~L 834 (904)
.. .......|..+++|++|||++|+.+....... ..++|++++||+| |+||||||+|+++ ++++|++|
T Consensus 310 ~~--~~~~~~~~~~~~~FldNHD~~R~~~~~~~~~~~~~~lA~a~llT~p~GiP~IYYGdE~g~~g~~~~~~l~~~i~~L 387 (479)
T PRK09441 310 FD--GTLVEADPFHAVTFVDNHDTQPGQALESPVEPWFKPLAYALILLREEGYPCVFYGDYYGASGYYIDMPFKEKLDKL 387 (479)
T ss_pred hC--cchhhcCcccceeeeccccCCCcccccccccccchHHHHHHHHhCCCCceeeEeccccCCCCCcccchHHHHHHHH
Confidence 21 11223456678999999999999887543222 3689999999999 9999999999976 89999999
Q ss_pred HHHHHhCccccCCCeeEEeeCCCEEEEEE-C----CEEEEEEeCCCC
Q 002585 835 LSVRKRNKIHCRSRVEIVKAERDVYAAII-D----EKVAMKLGPGHY 876 (904)
Q Consensus 835 i~lRk~~paL~~G~~~~l~~~~~v~a~~r-~----~~vlvvlnn~~~ 876 (904)
++|||++ +.|++..++.++++++|.| . +.++|+|||++.
T Consensus 388 i~lRk~~---~~G~~~~~~~~~~~~~~~R~~~~~~~~vvvvinn~~~ 431 (479)
T PRK09441 388 LLARKNF---AYGEQTDYFDHPNCIGWTRSGDEENPGLAVVISNGDA 431 (479)
T ss_pred HHHHHHh---CCCCeeEeecCCCEEEEEEecCCCCccEEEEEECCCC
Confidence 9999996 4799999999999999998 2 358889988653
No 6
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=1.4e-56 Score=533.60 Aligned_cols=360 Identities=19% Similarity=0.264 Sum_probs=252.9
Q ss_pred hhhhhcccccccccccchhccccCCCCCCCCCCCCCCCceeeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Q 002585 470 AEAYSIFRTTAPTFFEEAAVELEESKPPAKISPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPP 549 (904)
Q Consensus 470 a~~yqIf~~~~drf~~~~~~~~~~~~p~~r~~~~~~~~y~i~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~PI 549 (904)
+++||||| |||++++..+.+. ..+ ...+. .....| +||||+||++|||||++||||+|||+||
T Consensus 190 aviYqI~~---DRF~nGd~~Nd~~---~g~----~~d~~-~~~~~f------~GGdl~Gi~~kLdyl~~LGv~aIwlsPi 252 (683)
T PRK09505 190 ATVYFVLT---DRFENGDPSNDHS---YGR----HKDGM-QEIGTF------HGGDLRGLTEKLDYLQQLGVNALWISSP 252 (683)
T ss_pred CcEEEEeh---hhhcCCCcccccc---cCc----CCCCc-cccCcc------cCCCHHHHHHhhHHHHHcCCCEEEeCcc
Confidence 88999999 9999865332210 001 01110 012234 4999999999999999999999999999
Q ss_pred cCC---------------CCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCC------CCCC
Q 002585 550 TES---------------VSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQ------NQNG 608 (904)
Q Consensus 550 fes---------------~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~~~~------~~~g 608 (904)
+++ .++|||++.||+.|||+|||++|||+||++||++||+||||+|+||++..+. +...
T Consensus 253 ~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~ 332 (683)
T PRK09505 253 LEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGA 332 (683)
T ss_pred ccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhh
Confidence 987 2679999999999999999999999999999999999999999999995321 1111
Q ss_pred -----------CcccCCCCCCCCCCCc-----cCCCCCCCCCCCCCCC----------------------CCCCCCCccC
Q 002585 609 -----------VWNIFGGRLNWDDRAV-----VADDPHFQGRGNKSSG----------------------DNFHAAPNID 650 (904)
Q Consensus 609 -----------~~~~y~g~~~W~~~~~-----~~~~~~f~~~~~~~~~----------------------~~~~~lpdlN 650 (904)
....| .+|.+... ..+...|.....+..| .....|||||
T Consensus 333 ~~~~~~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~ 409 (683)
T PRK09505 333 LYLSGDENKKTLGERW---SDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIK 409 (683)
T ss_pred hhhhccccccccCccc---ccccccccccccccccccccCCccccccccccccccccccccccccccccccccccCCccc
Confidence 11111 22321100 0000011111111111 1234688888
Q ss_pred CC-----------------------CHHHHHHHHHHHHHHHhccCccEEEeccccccccchHHHHHHhc----------C
Q 002585 651 HS-----------------------QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEAT----------E 697 (904)
Q Consensus 651 ~~-----------------------np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~~f~~~~~~~~----------~ 697 (904)
++ ||+||++|++++++|++++||||||||+|+|++.+||+++.+++ +
T Consensus 410 te~~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~ 489 (683)
T PRK09505 410 TESTQASGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKAN 489 (683)
T ss_pred ccCccccccchhhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 86 45999999999999998899999999999999999988775432 2
Q ss_pred C-------C-EEEEeecCCCCcccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhch-hhhhhhhhcCCC
Q 002585 698 P-------Y-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRC-EYWRLSDEKGKP 768 (904)
Q Consensus 698 p-------~-~liGE~w~~~~~l~g~mny~~~~~~~~i~~~l~~~~g~~~~fdf~l~~~l~~~l~~~-~~~~l~~~~~~~ 768 (904)
| . +++||+|..... ...|.. .+++++++|.+...+..++... ....+.....
T Consensus 490 ~d~~~~~~~~~~vGEvw~~~~~---------------~~~y~~--~~fDsv~NF~~~~~~~~~~~~~~~l~~~~~~~~-- 550 (683)
T PRK09505 490 PDKALDDAPFWMTGEAWGHGVM---------------KSDYYR--HGFDAMINFDYQEQAAKAVDCLAQMDPTYQQMA-- 550 (683)
T ss_pred cccccccCCeEEEEEecCCchh---------------hHHHHh--hcCccccCchHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 2 3 799999975211 112322 3577888888765544332211 1111111110
Q ss_pred CCCcCCCCCcceeecccCCCCCccCCCCCChhHHHHHHHHHHhCCCeeeeecCChh-------------------HH---
Q 002585 769 PGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHIF-------------------SH--- 826 (904)
Q Consensus 769 ~~~~~~~P~~~vnflenHDt~R~~t~~~~~~~~~klA~allltlPGiP~IYyGdE~-------------------~W--- 826 (904)
... .+..+++|++|||++|+.+... +..+.++|++++||+||+|+||||||+ .|
T Consensus 551 -~~~--~~~~~l~FLdNHDt~Rf~s~~~-~~~~~klAaall~tlpGiP~IYYGdEiGm~gg~~g~DP~~~~R~~M~W~~~ 626 (683)
T PRK09505 551 -EKL--QDFNVLSYLSSHDTRLFFEGGQ-SYAKQRRAAELLLLAPGAVQIYYGDESARPFGPTGSDPLQGTRSDMNWQEV 626 (683)
T ss_pred -hhc--CccceeecccCCChhhhhhhcC-chHHHHHHHHHHHhCCCCcEEEechhhCccCCCCCCCCcccccccCCcccc
Confidence 000 1224679999999999988776 347889999999999999999999995 25
Q ss_pred ------HHHHHHHHHHHHHhCccccCCCeeEEeeCCCEEEEEE---CCEEEEEEeC
Q 002585 827 ------YRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAII---DEKVAMKLGP 873 (904)
Q Consensus 827 ------l~~~~r~Li~lRk~~paL~~G~~~~l~~~~~v~a~~r---~~~vlvvlnn 873 (904)
++++||+|++||+++|+|+.|+++.+. ++++|+|.| +++++||+|-
T Consensus 627 ~~~~~~Ll~~~kkLi~LRk~~pAL~~G~~~~l~-~~~~~aF~R~~~~d~vlVv~~~ 681 (683)
T PRK09505 627 SGKSAALLAHWQKLGQFRARHPAIGAGKQTTLS-LKQYYAFVREHGDDKVMVVWAG 681 (683)
T ss_pred ccchHHHHHHHHHHHHHHhhCHHhhCCceEEec-cCCEEEEEEEeCCCEEEEEEeC
Confidence 899999999999999999999998874 568999998 5567777663
No 7
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=2.1e-54 Score=510.75 Aligned_cols=353 Identities=21% Similarity=0.278 Sum_probs=252.8
Q ss_pred CCCCCceeeeecccccCCC-CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCC-CCCCCcccCCCcCCCCCCHHHHHHHH
Q 002585 503 GTGTGFEILCQGFNWESHK-SGRWYMELKEKATELSSLGFSVIWLPPPTESVS-PEGYMPRDLYNLSSRYGNIDELKDVV 580 (904)
Q Consensus 503 ~~~~~y~i~~~~F~Wd~~~-~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s-~hGYd~~Dy~~IDp~lGt~edlk~LV 580 (904)
.+.+.|+++++.|. ++++ .+|||+||+++||||++||||+|||+|||++++ +|||++.||++|||+|||+++||+||
T Consensus 4 ~~~viYqi~~~~f~-d~~~~~~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv 82 (539)
T TIGR02456 4 KDAVFYEVHVRSFF-DSNGDGIGDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFV 82 (539)
T ss_pred ccceEEEEehhHhh-cCCCCCccCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHH
Confidence 33444555555553 2222 369999999999999999999999999999985 79999999999999999999999999
Q ss_pred HHHHHcCCEEEEEeecccccccCCCCC----CCcccCCCCCCCCCCCccCCCC--CCCC-----------CCCCCCCCCC
Q 002585 581 NKFHDVGMKILGDVVLNHRCAHYQNQN----GVWNIFGGRLNWDDRAVVADDP--HFQG-----------RGNKSSGDNF 643 (904)
Q Consensus 581 ~aAH~~GIkVILD~V~NHt~~~~~~~~----g~~~~y~g~~~W~~~~~~~~~~--~f~~-----------~~~~~~~~~~ 643 (904)
++||++||+||||+|+||++.+|++.. +..++|.+.+.|.........+ .|.+ .+.+.....+
T Consensus 83 ~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~ 162 (539)
T TIGR02456 83 DEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFF 162 (539)
T ss_pred HHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEeccc
Confidence 999999999999999999999987531 1122232212221110000000 0000 0111111235
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEeccccccc-------------cchHHHHHHhc---CCC-EEEEeec
Q 002585 644 HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW-------------GGYVKDYLEAT---EPY-FAVGEYW 706 (904)
Q Consensus 644 ~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~-------------~~f~~~~~~~~---~p~-~liGE~w 706 (904)
..+|+||++||+||++|++++++|+ ++||||||||+++++. .+||+++.+.+ +|+ +++||++
T Consensus 163 ~~~pdln~~np~vr~~l~~~~~~w~-~~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~p~~~~iaE~~ 241 (539)
T TIGR02456 163 SHQPDLNYDNPAVHDAVHDVMRFWL-DLGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREYPGRMLLAEAN 241 (539)
T ss_pred CCCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 7899999999999999999999999 6999999999998762 35777765544 577 7999985
Q ss_pred CCCCcccccCCCCchHHHHHHHHHHhh-cC-CCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCC--Ccceee
Q 002585 707 DSLSYTYGEMDHNQDAHRQRIIDWINA-AS-GTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWP--SRAVTF 782 (904)
Q Consensus 707 ~~~~~l~g~mny~~~~~~~~i~~~l~~-~~-g~~~~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P--~~~vnf 782 (904)
.. ...+..|+.. .+ +++++|+|++...+...+...+...+...+... ..+| ...++|
T Consensus 242 ~~---------------~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~~~~~l~~~l~~~----~~~~~~~~~~~f 302 (539)
T TIGR02456 242 QW---------------PEEVVAYFGDEGDPECHMAFNFPVMPRIFMALRREDRSPIIDILKET----PDIPDSCQWCIF 302 (539)
T ss_pred CC---------------HHHHHHhhCCCCCCeeeeEEChhhhhhhhcccccCCHHHHHHHHHHh----hhccCCCceeee
Confidence 42 1335566532 22 577889998865554443333222222211100 0122 245689
Q ss_pred cccCCCC-------------------------------CccCCCCCChhHHHHHHHHHHhCCCeeeeecCChhH------
Q 002585 783 IENHDTG-------------------------------STQGHWRFPGGREMQGYAYILTHPGTPSVFYDHIFS------ 825 (904)
Q Consensus 783 lenHDt~-------------------------------R~~t~~~~~~~~~klA~allltlPGiP~IYyGdE~~------ 825 (904)
++|||+. |+.+.++.+.+++++|++++||+||+|+||||+|++
T Consensus 303 l~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~~l~tlpG~P~IYYG~EiGm~~~~~ 382 (539)
T TIGR02456 303 LRNHDELTLEMVTDEERDFMYAAYAPDPRMRINLGIRRRLAPLLDNDRRRIELLTALLLSLPGSPILYYGDEIGMGDNIW 382 (539)
T ss_pred cCCCCccCccccChhhhhhhhhhccCCcchhcccchhhhhhhcccccHHHHHHHHHHHHhCCCceEEEechhhcCcCCCc
Confidence 9999994 444555545678899999999999999999999963
Q ss_pred ------------H------------------------------------------HHHHHHHHHHHHHhCccccCCCeeE
Q 002585 826 ------------H------------------------------------------YRQEIEALLSVRKRNKIHCRSRVEI 851 (904)
Q Consensus 826 ------------W------------------------------------------l~~~~r~Li~lRk~~paL~~G~~~~ 851 (904)
| ++++||+||+|||++++|..|+++.
T Consensus 383 ~~~~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~yr~Li~lRk~~~aL~~G~~~~ 462 (539)
T TIGR02456 383 LGDRNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTRRVLHVRKAHPAFGRGSLTF 462 (539)
T ss_pred cCCCcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHHhhCcccHHHHHHHHHHHHhcCcccccCceEE
Confidence 2 4788999999999999999999999
Q ss_pred EeeC-CCEEEEEE---CCEEEEEEeCCCC
Q 002585 852 VKAE-RDVYAAII---DEKVAMKLGPGHY 876 (904)
Q Consensus 852 l~~~-~~v~a~~r---~~~vlvvlnn~~~ 876 (904)
+..+ +++++|.| ++.++|++|++..
T Consensus 463 l~~~~~~v~~f~R~~~~~~vlVv~N~s~~ 491 (539)
T TIGR02456 463 LPTGNRRVLAFLREYEGERVLCVFNFSRN 491 (539)
T ss_pred EecCCCCEEEEEEEcCCcEEEEEEeCCCC
Confidence 8875 47999998 6688888887753
No 8
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=1.3e-52 Score=495.12 Aligned_cols=353 Identities=18% Similarity=0.239 Sum_probs=244.6
Q ss_pred CCCCceeeeecccccCCC-CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCC-CCCCcccCCCcCCCCCCHHHHHHHHH
Q 002585 504 TGTGFEILCQGFNWESHK-SGRWYMELKEKATELSSLGFSVIWLPPPTESVSP-EGYMPRDLYNLSSRYGNIDELKDVVN 581 (904)
Q Consensus 504 ~~~~y~i~~~~F~Wd~~~-~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~-hGYd~~Dy~~IDp~lGt~edlk~LV~ 581 (904)
+.+.|+++++.|. ++++ ..|||+||+++|+||++|||++|||+|||+++++ +||++.||+.|||+|||+++|++||+
T Consensus 4 ~~v~Y~i~~~~f~-~~~~~~~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~ 82 (543)
T TIGR02403 4 KKVIYQIYPKSFY-DSTGDGTGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVS 82 (543)
T ss_pred cCEEEEEEhHHHh-cCCCCCccCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHH
Confidence 3344555555554 2222 2499999999999999999999999999999854 79999999999999999999999999
Q ss_pred HHHHcCCEEEEEeecccccccCCCCCCC---cccCCCCCCCCCCC-c-cCC-CCCCCC--------CCCCCCCCCCCCCC
Q 002585 582 KFHDVGMKILGDVVLNHRCAHYQNQNGV---WNIFGGRLNWDDRA-V-VAD-DPHFQG--------RGNKSSGDNFHAAP 647 (904)
Q Consensus 582 aAH~~GIkVILD~V~NHt~~~~~~~~g~---~~~y~g~~~W~~~~-~-~~~-~~~f~~--------~~~~~~~~~~~~lp 647 (904)
+||++||+||||+|+|||+.+|++.... -++|...+.|.+.. . +.+ ...|.+ .+++........+|
T Consensus 83 ~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~p 162 (543)
T TIGR02403 83 EAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQA 162 (543)
T ss_pred HHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCcCC
Confidence 9999999999999999999998753211 12232212232211 0 000 011111 11222222336799
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhccCccEEEecccccccc-----------------------chHHHHHHhc--CCC-EE
Q 002585 648 NIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG-----------------------GYVKDYLEAT--EPY-FA 701 (904)
Q Consensus 648 dlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~-----------------------~f~~~~~~~~--~p~-~l 701 (904)
|||++||+||++|.++++||+ ++||||||||+|++++. +|++++.+.+ +++ |+
T Consensus 163 dln~~np~v~~~i~~~~~~W~-~~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l 241 (543)
T TIGR02403 163 DLNWENPEVREELKDVVNFWR-DKGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFGDNDSVT 241 (543)
T ss_pred ccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhccCCeEE
Confidence 999999999999999999999 68999999999998852 3677765544 455 89
Q ss_pred EEeecCCCCcccccCCCCchHHHHHHHHHHhh-cCCCcccccchhhHHHHHhhhc----------hhhhhhhhhcCCCCC
Q 002585 702 VGEYWDSLSYTYGEMDHNQDAHRQRIIDWINA-ASGTAGAFDVTTKGILHSALDR----------CEYWRLSDEKGKPPG 770 (904)
Q Consensus 702 iGE~w~~~~~l~g~mny~~~~~~~~i~~~l~~-~~g~~~~fdf~l~~~l~~~l~~----------~~~~~l~~~~~~~~~ 770 (904)
|||+|.... ..+..|... ...+++.|+|... ......+ ..+......+.. .
T Consensus 242 vgE~~~~~~--------------~~~~~y~~~~~~~~d~~~nf~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~ 303 (543)
T TIGR02403 242 VGEMSSTTI--------------ENCIRYSNPENKELSMVFTFHHL--KVDYPNGEKWTLAKFDFAKLKEIFSTWQT--G 303 (543)
T ss_pred EEEeCCCCH--------------HHHHhhhCCCCCeeCeEEChhhh--hchhccccccccCCCCHHHHHHHHHHHHH--h
Confidence 999997421 122233321 1234455555421 1111000 001111111100 0
Q ss_pred CcCCCCCcceeecccCCCCCccCCCCCCh----hHHHHHHHHHHhCCCeeeeecCChhH---------------------
Q 002585 771 VVGWWPSRAVTFIENHDTGSTQGHWRFPG----GREMQGYAYILTHPGTPSVFYDHIFS--------------------- 825 (904)
Q Consensus 771 ~~~~~P~~~vnflenHDt~R~~t~~~~~~----~~~klA~allltlPGiP~IYyGdE~~--------------------- 825 (904)
... .....++|++|||++|+.+.++... +..++|++++||+||+||||||||+|
T Consensus 304 ~~~-~~~~~~~fl~NHD~~R~~s~~g~~~~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~~~~~~~~~~D~~~~~~~ 382 (543)
T TIGR02403 304 MQA-GGGWNALFWNNHDQPRAVSRFGDDGEYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESLNAY 382 (543)
T ss_pred ccc-cCcceeeecCCCChhhHHHhcCCchhhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCCCCCCHHHhcCHHHHHHH
Confidence 000 0123457999999999999987432 35788899999999999999999831
Q ss_pred ------------------------------H-----------------------------------HHHHHHHHHHHHHh
Q 002585 826 ------------------------------H-----------------------------------YRQEIEALLSVRKR 840 (904)
Q Consensus 826 ------------------------------W-----------------------------------l~~~~r~Li~lRk~ 840 (904)
| ++++||+||+|||+
T Consensus 383 ~~~~~~g~~~~~~~~~~~~~~rd~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~Li~lRk~ 462 (543)
T TIGR02403 383 DILLKKGKSEEEALAILKQKSRDNSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSIFYFYQKLIALRKS 462 (543)
T ss_pred HHHhhcCCCHHHHHHhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCccHHHHHHHHHHHHhh
Confidence 2 67899999999999
Q ss_pred CccccCCCeeEEeeCC-CEEEEEE---CCEEEEEEeCCCCC
Q 002585 841 NKIHCRSRVEIVKAER-DVYAAII---DEKVAMKLGPGHYE 877 (904)
Q Consensus 841 ~paL~~G~~~~l~~~~-~v~a~~r---~~~vlvvlnn~~~~ 877 (904)
+|+|+.|+++.+..++ ++++|.| +++++|++|.++..
T Consensus 463 ~~aL~~G~~~~~~~~~~~v~a~~R~~~~~~~lVv~N~s~~~ 503 (543)
T TIGR02403 463 EPVITDGDYQFLLPDDPSVWAYTRTYKNQKLLVINNFYGEE 503 (543)
T ss_pred cccccCccEEEeecCCCcEEEEEEEcCCcEEEEEEECCCCC
Confidence 9999999999987765 7999998 56788888887643
No 9
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=2.5e-51 Score=483.77 Aligned_cols=334 Identities=16% Similarity=0.194 Sum_probs=232.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCC-CCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 002585 523 GRWYMELKEKATELSSLGFSVIWLPPPTESVS-PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (904)
Q Consensus 523 GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s-~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~ 601 (904)
+|||+||+++||||++||||+|||+||++++. +|||++.||+.|||+|||++||++||++||++||+||||+|+||++.
T Consensus 29 ~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s~ 108 (551)
T PRK10933 29 TGDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHTST 108 (551)
T ss_pred CcCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCccC
Confidence 69999999999999999999999999999885 69999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC---cccCCCCCCCCCCCc---cCC-CCCCCCCC--------CCCCCCCCCCCCccCCCCHHHHHHHHHHHHH
Q 002585 602 HYQNQNGV---WNIFGGRLNWDDRAV---VAD-DPHFQGRG--------NKSSGDNFHAAPNIDHSQDFVRKDIKEWLCW 666 (904)
Q Consensus 602 ~~~~~~g~---~~~y~g~~~W~~~~~---~~~-~~~f~~~~--------~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~ 666 (904)
+|++.... -++|...+.|.+... +.+ ...|.+.. .+........+||||++||+||++|++++++
T Consensus 109 ~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdLn~~np~V~~~l~~~~~~ 188 (551)
T PRK10933 109 QHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVCEF 188 (551)
T ss_pred chhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeecccccCCccCCCCHHHHHHHHHHHHH
Confidence 99763322 123322223322110 000 01121111 1111223367999999999999999999999
Q ss_pred HHhccCccEEEecccccccc-----------------------chHHHHHHhc-CC-C-EEEEeecCCCCcccccCCCCc
Q 002585 667 LRNEIGYDGWRLDFVRGFWG-----------------------GYVKDYLEAT-EP-Y-FAVGEYWDSLSYTYGEMDHNQ 720 (904)
Q Consensus 667 Wi~e~GIDGfRlD~a~~~~~-----------------------~f~~~~~~~~-~p-~-~liGE~w~~~~~l~g~mny~~ 720 (904)
|+ ++||||||||+|+++.. +|++++.+.+ ++ . ++|||+|....
T Consensus 189 W~-~~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vgE~~~~~~---------- 257 (551)
T PRK10933 189 WA-DRGVDGLRLDVVNLISKDQDFPDDLDGDGRRFYTDGPRAHEFLQEMNRDVFTPRGLMTVGEMSSTSL---------- 257 (551)
T ss_pred HH-HCCCcEEEEcchhhcCcCCCCCCCcccccccccCCChHHHHHHHHHHHHhhcccCcEEEEeecCCCH----------
Confidence 99 79999999999998764 3556554432 22 3 79999996421
Q ss_pred hHHHHHHHHHHhh-cCCCcccccchhhHHHHHhhhch----------hhhhhhhhcCCCCCCcCCCCCcceeecccCCCC
Q 002585 721 DAHRQRIIDWINA-ASGTAGAFDVTTKGILHSALDRC----------EYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTG 789 (904)
Q Consensus 721 ~~~~~~i~~~l~~-~~g~~~~fdf~l~~~l~~~l~~~----------~~~~l~~~~~~~~~~~~~~P~~~vnflenHDt~ 789 (904)
+.+..|... ...+...|+|... ....+.+. .+.++...+.. . +. ......+|++|||++
T Consensus 258 ----~~~~~y~~~~~~~~~~~fnf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~-~~~~~~~fl~NHD~~ 327 (551)
T PRK10933 258 ----EHCQRYAALTGSELSMTFNFHHL--KVDYPNGEKWTLAKPDFVALKTLFRHWQQ--G-MH-NVAWNALFWCNHDQP 327 (551)
T ss_pred ----HHHHHhhcccCCeeeeEecHHHh--hhhhccCCcccccccCHHHHHHHHHHHHH--h-hc-ccCeeccccCCCCcc
Confidence 112222211 1123334443211 10000000 00011111000 0 00 001235789999999
Q ss_pred CccCCCCCCh----hHHHHHHHHHHhCCCeeeeecCChhH----------------------------------------
Q 002585 790 STQGHWRFPG----GREMQGYAYILTHPGTPSVFYDHIFS---------------------------------------- 825 (904)
Q Consensus 790 R~~t~~~~~~----~~~klA~allltlPGiP~IYyGdE~~---------------------------------------- 825 (904)
|+.+.++.+. ..++++++++||+||+|+||||+|+|
T Consensus 328 R~~sr~g~~~~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~~~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~~~~~~ 407 (551)
T PRK10933 328 RIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELRNDGRDADELLAILAS 407 (551)
T ss_pred cHHHHcCCchhHHHHHHHHHHHHHHhCCCceEEEeecccCCCCCCCCCHHHhcCHHHHHHHHHHhhcCCCHHHHHhhhhc
Confidence 9999987442 23678888999999999999999841
Q ss_pred -----------H-----------------------------------HHHHHHHHHHHHHhCccccCCCeeEEeeC-CCE
Q 002585 826 -----------H-----------------------------------YRQEIEALLSVRKRNKIHCRSRVEIVKAE-RDV 858 (904)
Q Consensus 826 -----------W-----------------------------------l~~~~r~Li~lRk~~paL~~G~~~~l~~~-~~v 858 (904)
| ++++||+||+|||++|+|+.|+++.+..+ +++
T Consensus 408 ~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv~~Q~~~~~Sll~~yk~Li~lRk~~~aL~~G~~~~~~~~~~~v 487 (551)
T PRK10933 408 KSRDNSRTPMQWDNGDNAGFTQGEPWIGLCDNYQEINVEAALADEDSVFYTYQKLIALRKQEPVLTWGDYQDLLPNHPSL 487 (551)
T ss_pred cCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccHHHHhcCcccHHHHHHHHHHHhhcChhhccceeEEeccCCCcE
Confidence 2 56899999999999999999999987654 579
Q ss_pred EEEEE---CCEEEEEEeCCCCC
Q 002585 859 YAAII---DEKVAMKLGPGHYE 877 (904)
Q Consensus 859 ~a~~r---~~~vlvvlnn~~~~ 877 (904)
++|.| +++++|++|.++..
T Consensus 488 ~af~R~~~~~~~lvv~N~s~~~ 509 (551)
T PRK10933 488 WCYRREWQGQTLLVIANLSREP 509 (551)
T ss_pred EEEEEEcCCcEEEEEEECCCCC
Confidence 99998 67888888887643
No 10
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=5e-48 Score=454.93 Aligned_cols=341 Identities=21% Similarity=0.233 Sum_probs=242.6
Q ss_pred CCCCCceeeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCC--CCCCCCcccCCCcCCCCCCHHHHHHHH
Q 002585 503 GTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVV 580 (904)
Q Consensus 503 ~~~~~y~i~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edlk~LV 580 (904)
.+...||++++.|+ ..|||+||+++|||||+||||+||||||++++ .+|||++.||++||++|||++|||+||
T Consensus 92 ~~~viYE~hv~~f~-----~~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV 166 (542)
T TIGR02402 92 EEAVIYELHVGTFT-----PEGTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALV 166 (542)
T ss_pred cccEEEEEEhhhcC-----CCCCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHH
Confidence 56678999999997 37999999999999999999999999998877 689999999999999999999999999
Q ss_pred HHHHHcCCEEEEEeecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCH---HHH
Q 002585 581 NKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQD---FVR 657 (904)
Q Consensus 581 ~aAH~~GIkVILD~V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np---~Vr 657 (904)
++||++||+||||+|+||++.++... ..|. . +|.. .+.++| .+++|+++| +||
T Consensus 167 ~~aH~~Gi~VilD~V~NH~~~~~~~~----~~~~---~-----------y~~~--~~~~~w----g~~~n~~~~~~~~vr 222 (542)
T TIGR02402 167 DAAHGLGLGVILDVVYNHFGPEGNYL----PRYA---P-----------YFTD--RYSTPW----GAAINFDGPGSDEVR 222 (542)
T ss_pred HHHHHCCCEEEEEEccCCCCCccccc----cccC---c-----------cccC--CCCCCC----CCccccCCCcHHHHH
Confidence 99999999999999999998654210 0110 0 1211 011222 247999999 999
Q ss_pred HHHHHHHHHHHhccCccEEEeccccccccc----hHHHHHH---hcCCC----EEEEeecCCC-Cccc----ccCCCC--
Q 002585 658 KDIKEWLCWLRNEIGYDGWRLDFVRGFWGG----YVKDYLE---ATEPY----FAVGEYWDSL-SYTY----GEMDHN-- 719 (904)
Q Consensus 658 ~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~~----f~~~~~~---~~~p~----~liGE~w~~~-~~l~----g~mny~-- 719 (904)
++|++++++|+++|||||||||+++++... |++++.+ +++|+ ++|||.|.+. .++. +.+.+.
T Consensus 223 ~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~li~E~~~~~~~~~~~~~~~~~~~d~~ 302 (542)
T TIGR02402 223 RYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAELRPVHLIAESDLNDPSLVTPREDGGYGLDAQ 302 (542)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCCCceEEEEEecCCCCCcccccccCCccceEEE
Confidence 999999999999999999999999888643 6766544 44554 7999998542 2221 112111
Q ss_pred -chHHHHHHHHHHhhcC-CCcccccchhhHHHHHhhhch-----hhhhhhh-hcCCCCCCcCCCCCcceeecccCCC---
Q 002585 720 -QDAHRQRIIDWINAAS-GTAGAFDVTTKGILHSALDRC-----EYWRLSD-EKGKPPGVVGWWPSRAVTFIENHDT--- 788 (904)
Q Consensus 720 -~~~~~~~i~~~l~~~~-g~~~~fdf~l~~~l~~~l~~~-----~~~~l~~-~~~~~~~~~~~~P~~~vnflenHDt--- 788 (904)
.+.++..+..++.+.. +..+.+.-.. ..+.+.+..+ .+..... ..+.+. ...-|.++++|++|||+
T Consensus 303 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~-~~l~~~l~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~vnfl~nHD~~gn 379 (542)
T TIGR02402 303 WNDDFHHALHVLLTGERQGYYADFGDPL-AALAKTLRDGFVYDGEYSPFRGRPHGRPS--GDLPPHRFVVFIQNHDQIGN 379 (542)
T ss_pred ECchHHHHHHHHhcCCcceeecccCcCH-HHHHHHHHHhcccCccccccccccCCCCC--CCCCHHHEEEEccCcccccc
Confidence 1235677777764321 1211111011 1222222211 0000000 000000 00124578999999997
Q ss_pred ----CCccCCCCCChhHHHHHHHHHHhCCCeeeeecCChh----------------------------------------
Q 002585 789 ----GSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHIF---------------------------------------- 824 (904)
Q Consensus 789 ----~R~~t~~~~~~~~~klA~allltlPGiP~IYyGdE~---------------------------------------- 824 (904)
.|+.+.+. .++.++|++++||+||+||||||||+
T Consensus 380 ~~~~~Rl~~~~~--~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~~~p 457 (542)
T TIGR02402 380 RALGERLSQLLS--PGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPEDVP 457 (542)
T ss_pred cchhhhhhhcCC--HHHHHHHHHHHHHcCCCceeeccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccccccCC
Confidence 68877664 58899999999999999999999983
Q ss_pred -------------HH----------HHHHHHHHHHHHHhCccccCCCeeEEee----CCCEEEEEE-CCEEEEEEeCCCC
Q 002585 825 -------------SH----------YRQEIEALLSVRKRNKIHCRSRVEIVKA----ERDVYAAII-DEKVAMKLGPGHY 876 (904)
Q Consensus 825 -------------~W----------l~~~~r~Li~lRk~~paL~~G~~~~l~~----~~~v~a~~r-~~~vlvvlnn~~~ 876 (904)
+| ++++||+||+|||++++|+.++...+.. ++.++++.. +++++|++|.++.
T Consensus 458 dp~~~~~~~~~~~~W~~~~~~~~~~~~~~yr~Li~lRk~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N~~~~ 537 (542)
T TIGR02402 458 DPQDEETFLRSKLDWAEAESGEHARWLAFYRDLLALRRELPVLLLPGARALEVVVDEDPGWVAVRFGRGELVLAANLSTS 537 (542)
T ss_pred CCCchhhHhhccCCcccccccchHHHHHHHHHHHHHhccCccccCCCcccceeeecCCCCEEEEEECCCeEEEEEeCCCC
Confidence 37 8899999999999999998887555443 446777766 5678888888764
Q ss_pred C
Q 002585 877 E 877 (904)
Q Consensus 877 ~ 877 (904)
.
T Consensus 538 ~ 538 (542)
T TIGR02402 538 P 538 (542)
T ss_pred C
Confidence 4
No 11
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=4.3e-48 Score=462.30 Aligned_cols=348 Identities=19% Similarity=0.241 Sum_probs=231.8
Q ss_pred CCCCceeeeecccccCCC---CCCCHHHHH-----------HHHHHHHHcCCCEEEeCCCcCCCC----------CCCCC
Q 002585 504 TGTGFEILCQGFNWESHK---SGRWYMELK-----------EKATELSSLGFSVIWLPPPTESVS----------PEGYM 559 (904)
Q Consensus 504 ~~~~y~i~~~~F~Wd~~~---~GGdl~GI~-----------ekLdYLk~LGVnaI~L~PIfes~s----------~hGYd 559 (904)
+...||+++++|+-+... ..|+|.|++ ++|||||+||||+||||||+++.+ +|||+
T Consensus 127 ~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~ 206 (605)
T TIGR02104 127 DAIIYELHIRDFSIHENSGVKNKGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYD 206 (605)
T ss_pred HcEEEEEecchhccCCCCCcCCCCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCC
Confidence 456788888888632111 135655555 559999999999999999999863 69999
Q ss_pred cccCCCcCCCCCC--------HHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCCCcccCCCC-CCCCCCCccCCCCC
Q 002585 560 PRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGR-LNWDDRAVVADDPH 630 (904)
Q Consensus 560 ~~Dy~~IDp~lGt--------~edlk~LV~aAH~~GIkVILD~V~NHt~~~~~~~~g~~~~y~g~-~~W~~~~~~~~~~~ 630 (904)
+.||++++++||+ .+|||+||++||++||+||||+|+||++.... .+|.+. ..|+..
T Consensus 207 ~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~------~~f~~~~~~~~~~-------- 272 (605)
T TIGR02104 207 PLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSREE------SPFEKTVPGYYYR-------- 272 (605)
T ss_pred CccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCC------CcccCCCCCeeEE--------
Confidence 9999999999987 48999999999999999999999999985311 122221 111100
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEeccccccccchHHHHHHh---cCCC-EEEEeec
Q 002585 631 FQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEA---TEPY-FAVGEYW 706 (904)
Q Consensus 631 f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~~f~~~~~~~---~~p~-~liGE~w 706 (904)
....+.+..+.++ ..++|+++|+||++|++++++|+++|||||||||++.+++.+|++++.++ .+|. +++||.|
T Consensus 273 ~~~~g~~~~~~g~--~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~ligE~w 350 (605)
T TIGR02104 273 YNEDGTLSNGTGV--GNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIETMNEIRKALNKIDPNILLYGEGW 350 (605)
T ss_pred ECCCCCccCCCcc--cCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHHHHHHHHHHHHhhCCCeEEEEccC
Confidence 0111112112222 34799999999999999999999999999999999999999998887654 4666 7999999
Q ss_pred CCCCcccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhh---------hch--hhhhhhhhcCCCC-----C
Q 002585 707 DSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSAL---------DRC--EYWRLSDEKGKPP-----G 770 (904)
Q Consensus 707 ~~~~~l~g~mny~~~~~~~~i~~~l~~~~g~~~~fdf~l~~~l~~~l---------~~~--~~~~l~~~~~~~~-----~ 770 (904)
+..+.+.. +.. . ........ ...+.|++.+...++... .+. ....+...+.... .
T Consensus 351 ~~~~~~~~---~~~----~-~~~~~~~~-~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~~~ 421 (605)
T TIGR02104 351 DLGTPLPP---EQK----A-TKANAYQM-PGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGSIELDAVK 421 (605)
T ss_pred CCCCCcch---hhh----h-hhhccCCC-CceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCChhhcccc
Confidence 86431110 000 0 00000000 001223333332222100 000 0111111111000 0
Q ss_pred CcCCCCCcceeecccCCCCCccCCCCC---------ChhHHHHHHHHHHhCCCeeeeecCChhH----------------
Q 002585 771 VVGWWPSRAVTFIENHDTGSTQGHWRF---------PGGREMQGYAYILTHPGTPSVFYDHIFS---------------- 825 (904)
Q Consensus 771 ~~~~~P~~~vnflenHDt~R~~t~~~~---------~~~~~klA~allltlPGiP~IYyGdE~~---------------- 825 (904)
.....|..+|||++|||+.|+...+.. ..++.++|++++||+||+||||||||++
T Consensus 422 ~~~~~p~~~vnyl~~HD~~~l~d~l~~~~~~~~~~~~~~r~rla~alllts~GiP~iy~GdE~g~s~~g~~n~y~~~d~~ 501 (605)
T TIGR02104 422 PSALDPSQSINYVECHDNHTLWDKLSLANPDETEEQLKKRQKLATAILLLSQGIPFLHAGQEFMRTKQGDENSYNSPDSI 501 (605)
T ss_pred cccCChhheEEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCceeecchhhhccCCCCCCCccCCCcc
Confidence 012356689999999999987544221 1457899999999999999999999962
Q ss_pred ----H--------HHHHHHHHHHHHHhCccccCCCee-------EEee-CCCEEEEEEC--------CEEEEEEeCCCC
Q 002585 826 ----H--------YRQEIEALLSVRKRNKIHCRSRVE-------IVKA-ERDVYAAIID--------EKVAMKLGPGHY 876 (904)
Q Consensus 826 ----W--------l~~~~r~Li~lRk~~paL~~G~~~-------~l~~-~~~v~a~~r~--------~~vlvvlnn~~~ 876 (904)
| ++++||+||+|||++|+|+.|+.. ++.. ++.+++|.|. +.++|++|.++.
T Consensus 502 ~~ldW~~~~~~~~~~~~~~~Li~lRk~~pal~~~~~~~i~~~~~~~~~~~~~vla~~r~~~~~~~~~~~llVv~N~s~~ 580 (605)
T TIGR02104 502 NQLDWDRKATFKDDVNYIKGLIALRKAHPAFRLSSAEDIRKHLEFLPAEPSGVIAYRLKDHANGDPWKDIIVIHNANPE 580 (605)
T ss_pred cccCccccccchHHHHHHHHHHHHHhhCccccCCChhhhcceeEEccCCCCcEEEEEEeCCcCCCCcCeEEEEEeCCCC
Confidence 5 899999999999999999988753 2222 4579999872 257888887753
No 12
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=1.4e-48 Score=426.22 Aligned_cols=284 Identities=26% Similarity=0.421 Sum_probs=198.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcCCC-CCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 002585 524 RWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~-s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~~ 602 (904)
|||+||++||||||+||||+|||+||++++ ++|||++.||++|||+|||++|||+||++||++||+||||+|+||++.+
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~ 80 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDD 80 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETT
T ss_pred CCHHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccccc
Confidence 899999999999999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcc----cCCCCCCCCCC--CccCCCC-CCCCCCCCCC-----CCCCCCCCccCCCCHHHHHHHHHHHHHHHhc
Q 002585 603 YQNQNGVWN----IFGGRLNWDDR--AVVADDP-HFQGRGNKSS-----GDNFHAAPNIDHSQDFVRKDIKEWLCWLRNE 670 (904)
Q Consensus 603 ~~~~~g~~~----~y~g~~~W~~~--~~~~~~~-~f~~~~~~~~-----~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e 670 (904)
|.+...... ++...+.|.+. ..+.+.. .+........ ...+..+|+||++||+||++|++++++|+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~-~ 159 (316)
T PF00128_consen 81 HPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWI-E 159 (316)
T ss_dssp SHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHH-H
T ss_pred cccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchh-h
Confidence 875211000 01111233211 0111100 1111111110 24678999999999999999999999999 7
Q ss_pred cCccEEEeccccccccchHHHHHHhcC---CC-EEEEeecCCCCcccccCCCCchHHHHHHHHHHhh-cCCCcccccchh
Q 002585 671 IGYDGWRLDFVRGFWGGYVKDYLEATE---PY-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINA-ASGTAGAFDVTT 745 (904)
Q Consensus 671 ~GIDGfRlD~a~~~~~~f~~~~~~~~~---p~-~liGE~w~~~~~l~g~mny~~~~~~~~i~~~l~~-~~g~~~~fdf~l 745 (904)
+||||||||++++++.++++++.++++ |. +++||+|.... ..+..+... .......+++..
T Consensus 160 ~giDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 225 (316)
T PF00128_consen 160 EGIDGFRLDAAKHIPKEFWKEFRDEVKEEKPDFFLIGEVWGGDN--------------EDLRQYAYDGYFDLDSVFDFPD 225 (316)
T ss_dssp TTESEEEETTGGGSSHHHHHHHHHHHHHHHTTSEEEEEESSSSH--------------HHHHHHHHHGTTSHSEEEHHHH
T ss_pred ceEeEEEEccccccchhhHHHHhhhhhhhccccceeeeeccCCc--------------cccchhhhccccccchhhcccc
Confidence 889999999999999999998877653 55 89999998631 111111111 111112334433
Q ss_pred hHHHHHhh---hch--hhhhhhhhcCCCCCCcCCC--CCcceeecccCCCCCccCCCCCChhHHHHHHHHHHhCCCeeee
Q 002585 746 KGILHSAL---DRC--EYWRLSDEKGKPPGVVGWW--PSRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSV 818 (904)
Q Consensus 746 ~~~l~~~l---~~~--~~~~l~~~~~~~~~~~~~~--P~~~vnflenHDt~R~~t~~~~~~~~~klA~allltlPGiP~I 818 (904)
........ ..+ ....+...... ....+ +...++|++|||+.|+.+.++....+.++|++++||+||+|||
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~~~ll~~pG~P~i 302 (316)
T PF00128_consen 226 YGLRSSFFDFWRHGDGDASDLANWLSS---WQSSYPDPYRAVNFLENHDTPRFASRFGNNRDRLKLALAFLLTSPGIPMI 302 (316)
T ss_dssp HHHHHHHHHHHTTTSSHHHHHHHHHHH---HHHHSTTGGGEEEESSHTTSSTHHHHTTTHHHHHHHHHHHHHHSSSEEEE
T ss_pred cccccchhhhhccccchhhhhhhhhhh---hhhhhcccceeeecccccccccchhhhcccchHHHHHHHHHHcCCCccEE
Confidence 32222221 011 01111111000 00011 3478999999999999888774444899999999999999999
Q ss_pred ecCChhH
Q 002585 819 FYDHIFS 825 (904)
Q Consensus 819 YyGdE~~ 825 (904)
|||||++
T Consensus 303 y~G~E~g 309 (316)
T PF00128_consen 303 YYGDEIG 309 (316)
T ss_dssp ETTGGGT
T ss_pred EeChhcc
Confidence 9999985
No 13
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=7.8e-47 Score=453.53 Aligned_cols=319 Identities=21% Similarity=0.280 Sum_probs=225.3
Q ss_pred CCCCCceeeeecccccCC----CCCCCHHHHHHH--HHHHHHcCCCEEEeCCCcCCC-----------CCCCCCcccCCC
Q 002585 503 GTGTGFEILCQGFNWESH----KSGRWYMELKEK--ATELSSLGFSVIWLPPPTESV-----------SPEGYMPRDLYN 565 (904)
Q Consensus 503 ~~~~~y~i~~~~F~Wd~~----~~GGdl~GI~ek--LdYLk~LGVnaI~L~PIfes~-----------s~hGYd~~Dy~~ 565 (904)
.+...||+++++|+-... ...|+|+||+++ |||||+||||+|||||||++. .+|||++.|||+
T Consensus 154 ~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a 233 (688)
T TIGR02100 154 EDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFA 233 (688)
T ss_pred cccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccc
Confidence 466789999999974211 245999999985 999999999999999999975 369999999999
Q ss_pred cCCCC---CCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCCCcccCCCC--CCCCCCCccCCCCCCCCCCCCCCC
Q 002585 566 LSSRY---GNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGR--LNWDDRAVVADDPHFQGRGNKSSG 640 (904)
Q Consensus 566 IDp~l---Gt~edlk~LV~aAH~~GIkVILD~V~NHt~~~~~~~~g~~~~y~g~--~~W~~~~~~~~~~~f~~~~~~~~~ 640 (904)
|||+| |+.+|||+||++||++||+||||+|+|||+..+.. +....|.+. ..|+... . ...+.+..+
T Consensus 234 ~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~--~~~~~~~~~d~~~yy~~~--~-----~~~~~~~~~ 304 (688)
T TIGR02100 234 PEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNEL--GPTLSFRGIDNASYYRLQ--P-----DDKRYYIND 304 (688)
T ss_pred cChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCC--CCcccccCCCCCcceEec--C-----CCCceecCC
Confidence 99999 67899999999999999999999999999976532 111112210 1111100 0 001112112
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEecccccccc---------chHHHHHHh-cCCC-EEEEeecCCC
Q 002585 641 DNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG---------GYVKDYLEA-TEPY-FAVGEYWDSL 709 (904)
Q Consensus 641 ~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~---------~f~~~~~~~-~~p~-~liGE~w~~~ 709 (904)
....+++|+++|+||++|+++++||+++|||||||||+|..+.. .+++++.+. +.|. ++|||.|+..
T Consensus 305 --~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~d~~~~~~~ligE~W~~~ 382 (688)
T TIGR02100 305 --TGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQDPVLAQVKLIAEPWDIG 382 (688)
T ss_pred --CCccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHhCcccCCeEEEEeeecCC
Confidence 23356899999999999999999999999999999999997753 466665442 3455 7999999864
Q ss_pred --CcccccCC----CCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeec
Q 002585 710 --SYTYGEMD----HNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFI 783 (904)
Q Consensus 710 --~~l~g~mn----y~~~~~~~~i~~~l~~~~g~~~~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vnfl 783 (904)
.+..+.+. ...+.+|+.|++|+.+..+... .+...+.+. ..+.. .....|.++|||+
T Consensus 383 ~~~~~~~~~~~~~~~~Nd~frd~ir~f~~g~~~~~~--------~~~~~l~gs--~~~~~-------~~~~~~~~~iNyv 445 (688)
T TIGR02100 383 PGGYQVGNFPPGWAEWNDRYRDDMRRFWRGDAGMIG--------ELANRLTGS--SDLFE-------HNGRRPWASINFV 445 (688)
T ss_pred CCcccccCCCCceEEecHHHHHHHHHHHcCCCCcHH--------HHHHHHhCC--Hhhcc-------ccCCCcCEEEEEE
Confidence 23222111 1224568999998875432211 121111111 00000 0112466899999
Q ss_pred ccCCCCCccCCC---------CC-----------------------------ChhHHHHHHHHHHhCCCeeeeecCChhH
Q 002585 784 ENHDTGSTQGHW---------RF-----------------------------PGGREMQGYAYILTHPGTPSVFYDHIFS 825 (904)
Q Consensus 784 enHDt~R~~t~~---------~~-----------------------------~~~~~klA~allltlPGiP~IYyGdE~~ 825 (904)
++||+.++...+ .+ ..++.|++++++||+||+|||||||||+
T Consensus 446 ~~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i~~GdE~g 525 (688)
T TIGR02100 446 TAHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPMLLAGDEFG 525 (688)
T ss_pred eCCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceeeecHhhc
Confidence 999997753321 00 0346899999999999999999999962
Q ss_pred --------------------H--------HHHHHHHHHHHHHhCccccCCCe
Q 002585 826 --------------------H--------YRQEIEALLSVRKRNKIHCRSRV 849 (904)
Q Consensus 826 --------------------W--------l~~~~r~Li~lRk~~paL~~G~~ 849 (904)
| +++|+|+||+|||+||+|+.+.+
T Consensus 526 ~t~~G~~n~y~~~~~~~~~dW~~~~~~~~l~~~~k~Li~lRk~~~~l~~~~~ 577 (688)
T TIGR02100 526 RTQQGNNNAYCQDNEIGWVDWSLDEGDDELLAFTKKLIALRKAHPVLRRERF 577 (688)
T ss_pred cCCCCCCCCccCCCcccccCcccccccHHHHHHHHHHHHHHHhCchhccccc
Confidence 5 99999999999999999987643
No 14
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.3e-46 Score=451.86 Aligned_cols=333 Identities=17% Similarity=0.216 Sum_probs=231.2
Q ss_pred CCCCceeeeecccccCCCCCCCHHHHHHHH-HHHHHcCCCEEEeCCCcCCC--CCCCCCcccCCCcCCCCCCHHHHHHHH
Q 002585 504 TGTGFEILCQGFNWESHKSGRWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVV 580 (904)
Q Consensus 504 ~~~~y~i~~~~F~Wd~~~~GGdl~GI~ekL-dYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edlk~LV 580 (904)
....||+++++|.-...+.-|+|+||+++| ||||+||||+||||||++++ .+|||++.|||+|||+|||++|||+||
T Consensus 147 ~~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv 226 (633)
T PRK12313 147 PISIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLV 226 (633)
T ss_pred CceEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHH
Confidence 346789999988743222238999999995 99999999999999999987 689999999999999999999999999
Q ss_pred HHHHHcCCEEEEEeecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCC-CCCCCCCCCCCCCccCCCCHHHHHH
Q 002585 581 NKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGR-GNKSSGDNFHAAPNIDHSQDFVRKD 659 (904)
Q Consensus 581 ~aAH~~GIkVILD~V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~-~~~~~~~~~~~lpdlN~~np~Vr~~ 659 (904)
++||++||+||||+|+||++.++.. ...|.+...|. +... ..+ ....+.+++|+.||+||++
T Consensus 227 ~~~H~~Gi~VilD~V~nH~~~~~~~----~~~~~~~~~~~----------~~~~~~~~---~~~w~~~~~n~~~~~vr~~ 289 (633)
T PRK12313 227 DALHQNGIGVILDWVPGHFPKDDDG----LAYFDGTPLYE----------YQDPRRAE---NPDWGALNFDLGKNEVRSF 289 (633)
T ss_pred HHHHHCCCEEEEEECCCCCCCCccc----ccccCCCccee----------ecCCCCCc---CCCCCCcccCCCCHHHHHH
Confidence 9999999999999999999976431 11122210010 0000 001 0011346899999999999
Q ss_pred HHHHHHHHHhccCccEEEeccccccc-----------------------cchHHHHHH---hcCCC-EEEEeecCCCCcc
Q 002585 660 IKEWLCWLRNEIGYDGWRLDFVRGFW-----------------------GGYVKDYLE---ATEPY-FAVGEYWDSLSYT 712 (904)
Q Consensus 660 i~~~l~~Wi~e~GIDGfRlD~a~~~~-----------------------~~f~~~~~~---~~~p~-~liGE~w~~~~~l 712 (904)
|++++++|+++|||||||||++..+- .+||+++.+ +.+|+ ++|||.+...+.+
T Consensus 290 l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~ 369 (633)
T PRK12313 290 LISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKV 369 (633)
T ss_pred HHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCccc
Confidence 99999999999999999999885331 357776654 44677 7999987643211
Q ss_pred -----cccCCCCch---HHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecc
Q 002585 713 -----YGEMDHNQD---AHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIE 784 (904)
Q Consensus 713 -----~g~mny~~~---~~~~~i~~~l~~~~g~~~~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vnfle 784 (904)
.|.++|... .+...+..|+...... ..++.. .+.. .+ ...+.. ..++++
T Consensus 370 ~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~--------~~----------~~~~~e-~~~l~~ 426 (633)
T PRK12313 370 TGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPIY-RKYHHN---LLTF--------SF----------MYAFSE-NFVLPF 426 (633)
T ss_pred cccccCCCCCcCceeCcHHHHHHHHHhhhCccc-cccccc---cchH--------HH----------hhhhhc-ccccCC
Confidence 222222110 1223334444221100 000000 0000 00 000111 125678
Q ss_pred cCCC-----CCccCCCCCCh----hHHHHHHHHHHhCCCeeeeecCChhH------------H----------HHHHHHH
Q 002585 785 NHDT-----GSTQGHWRFPG----GREMQGYAYILTHPGTPSVFYDHIFS------------H----------YRQEIEA 833 (904)
Q Consensus 785 nHDt-----~R~~t~~~~~~----~~~klA~allltlPGiP~IYyGdE~~------------W----------l~~~~r~ 833 (904)
|||+ +|+.+.+.++. +++|++++++||+||+||||||+|++ | ++++||+
T Consensus 427 sHD~~~~g~~~~~~~~~g~~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~r~ 506 (633)
T PRK12313 427 SHDEVVHGKKSLMHKMPGDRWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEWKHDESLEWHLLEDPMNAGMQRFTSD 506 (633)
T ss_pred CCcccccCCccHHHhcCCCHHHHHHHHHHHHHHHHhCCCCcEeecccccccCccCCccCCCCccccCChhHHHHHHHHHH
Confidence 9999 57766665444 67899999999999999999999974 5 8899999
Q ss_pred HHHHHHhCccccC-----CCeeEEeeC---CCEEEEEEC-----CEEEEEEeCCCC
Q 002585 834 LLSVRKRNKIHCR-----SRVEIVKAE---RDVYAAIID-----EKVAMKLGPGHY 876 (904)
Q Consensus 834 Li~lRk~~paL~~-----G~~~~l~~~---~~v~a~~r~-----~~vlvvlnn~~~ 876 (904)
||+||+++|+|+. |.++++..+ +++++|.|. +.++||+|.++.
T Consensus 507 Li~LRr~~paL~~~d~~~~~~~~l~~~~~~~~vlaf~R~~~~~~~~llvv~N~s~~ 562 (633)
T PRK12313 507 LNQLYKDEPALWELDFSPDGFEWIDADDADQSVLSFIRKGKNKGDFLVVVFNFTPV 562 (633)
T ss_pred HHHHHHhChHhhcccCCCCCcEEEECcCCCCCEEEEEEeCCCCCceEEEEEeCCCC
Confidence 9999999999974 457777653 369999882 468888888763
No 15
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=7e-47 Score=451.82 Aligned_cols=336 Identities=16% Similarity=0.143 Sum_probs=226.7
Q ss_pred CCCceeeeecccccCCCCCCCHHHHHHHH-HHHHHcCCCEEEeCCCcCCC--CCCCCCcccCCCcCCCCCCHHHHHHHHH
Q 002585 505 GTGFEILCQGFNWESHKSGRWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVN 581 (904)
Q Consensus 505 ~~~y~i~~~~F~Wd~~~~GGdl~GI~ekL-dYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edlk~LV~ 581 (904)
...|++++.+|. ..|+|++|+++| ||||+||||+||||||++++ .+|||++.|||+|+++|||++|||+||+
T Consensus 139 ~~iYe~hv~~~~-----~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~ 213 (613)
T TIGR01515 139 VSIYELHLGSWR-----HGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVD 213 (613)
T ss_pred ceEEEEehhhcc-----CCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHH
Confidence 467999999886 359999999997 99999999999999999987 6799999999999999999999999999
Q ss_pred HHHHcCCEEEEEeecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHH
Q 002585 582 KFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIK 661 (904)
Q Consensus 582 aAH~~GIkVILD~V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~ 661 (904)
+||++||+||||+|+||++.++.. ...|.+...|. ...... ......+.+++|+++|+||++|+
T Consensus 214 ~~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~~~~y~-----------~~~~~~-~~~~~w~~~~~~~~~~~Vr~~l~ 277 (613)
T TIGR01515 214 ACHQAGIGVILDWVPGHFPKDDHG----LAEFDGTPLYE-----------HKDPRD-GEHWDWGTLIFDYGRPEVRNFLV 277 (613)
T ss_pred HHHHCCCEEEEEecccCcCCccch----hhccCCCccee-----------ccCCcc-CcCCCCCCceecCCCHHHHHHHH
Confidence 999999999999999999976531 11122111110 000000 00111246799999999999999
Q ss_pred HHHHHHHhccCccEEEeccccccc------------------------cchHHHHHH---hcCCC-EEEEeecCCCCccc
Q 002585 662 EWLCWLRNEIGYDGWRLDFVRGFW------------------------GGYVKDYLE---ATEPY-FAVGEYWDSLSYTY 713 (904)
Q Consensus 662 ~~l~~Wi~e~GIDGfRlD~a~~~~------------------------~~f~~~~~~---~~~p~-~liGE~w~~~~~l~ 713 (904)
+++++|+++|||||||||++.++- .+||+++.+ +.+|+ ++|||.+.+.+-..
T Consensus 278 ~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~ 357 (613)
T TIGR01515 278 ANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWPGVT 357 (613)
T ss_pred HHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCcccc
Confidence 999999999999999999975431 357777654 44677 89999875422110
Q ss_pred ccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecccCCC-----
Q 002585 714 GEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDT----- 788 (904)
Q Consensus 714 g~mny~~~~~~~~i~~~l~~~~g~~~~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vnflenHDt----- 788 (904)
. ....+..+++..+++.+...+...+....+.+..............+.. ...+++|||+
T Consensus 358 ~--------------~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~~sHD~~~~g~ 422 (613)
T TIGR01515 358 R--------------PTDEGGLGFHYKWNMGWMHDTLDYMSTDPVERQYHHQLITFSMLYAFSE-NFVLPLSHDEVVHGK 422 (613)
T ss_pred c--------------cccCCcCCcCeeeCchHHHHHHHHHhhChhhHhhccccccHHHHHHhhh-ccccCCCCCCcccCc
Confidence 0 0000011122222222221122211111110000000000000000111 1236789999
Q ss_pred CCccCCCCCCh----hHHHHHHHHHHhCCCeeeeecCChhH------------H----------HHHHHHHHHHHHHhCc
Q 002585 789 GSTQGHWRFPG----GREMQGYAYILTHPGTPSVFYDHIFS------------H----------YRQEIEALLSVRKRNK 842 (904)
Q Consensus 789 ~R~~t~~~~~~----~~~klA~allltlPGiP~IYyGdE~~------------W----------l~~~~r~Li~lRk~~p 842 (904)
+|+...+.++. +++|++++++||+||+||||||+|++ | +.++||+|++||+++|
T Consensus 423 ~~i~~~~~g~~~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~k~L~~Lr~~~p 502 (613)
T TIGR01515 423 KSLLNKMPGDYWQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEWNDTEQLDWHLLSFPMHQGVSVFVRDLNRTYQKSK 502 (613)
T ss_pred ccHHHhCCCchHHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCCCCCccCCCccccCcccHHHHHHHHHHHHHHhhCH
Confidence 56666555432 57899999999999999999999963 5 8899999999999999
Q ss_pred cccCC-----CeeEEee---CCCEEEEEEC-----CEEEEEEeCCCC
Q 002585 843 IHCRS-----RVEIVKA---ERDVYAAIID-----EKVAMKLGPGHY 876 (904)
Q Consensus 843 aL~~G-----~~~~l~~---~~~v~a~~r~-----~~vlvvlnn~~~ 876 (904)
+|..| .++++.. ++.+++|.|. +.++||+|.+..
T Consensus 503 aL~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N~~~~ 549 (613)
T TIGR01515 503 ALYEHDFDPQGFEWIDVDDDEQSVFSFIRRAKKHGEALVIICNFTPV 549 (613)
T ss_pred HhhccCCCCCceEEEEcccCCCCEEEEEEecCCCCCeEEEEEeCCCC
Confidence 99754 3455644 3479999882 368888888764
No 16
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=2.1e-46 Score=446.77 Aligned_cols=357 Identities=17% Similarity=0.240 Sum_probs=241.6
Q ss_pred CCCCCCceeeeecccccCC----CCCCCHHHHHH--HHHHHHHcCCCEEEeCCCcCCC-----------CCCCCCcccCC
Q 002585 502 PGTGTGFEILCQGFNWESH----KSGRWYMELKE--KATELSSLGFSVIWLPPPTESV-----------SPEGYMPRDLY 564 (904)
Q Consensus 502 ~~~~~~y~i~~~~F~Wd~~----~~GGdl~GI~e--kLdYLk~LGVnaI~L~PIfes~-----------s~hGYd~~Dy~ 564 (904)
..+.+.||+++++|+-... ...|+|+|+++ +|||||+||||+|||||||++. .+|||++.|||
T Consensus 148 ~~~~vIYE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yf 227 (658)
T PRK03705 148 WGSTVIYEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMF 227 (658)
T ss_pred ccccEEEEEehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccc
Confidence 3567889999999973111 23499999997 5999999999999999999974 46999999999
Q ss_pred CcCCCCCCH-----HHHHHHHHHHHHcCCEEEEEeecccccccCCCCCCCcccCCCC--CCCCCCCccCCCCCCCCCCCC
Q 002585 565 NLSSRYGNI-----DELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGR--LNWDDRAVVADDPHFQGRGNK 637 (904)
Q Consensus 565 ~IDp~lGt~-----edlk~LV~aAH~~GIkVILD~V~NHt~~~~~~~~g~~~~y~g~--~~W~~~~~~~~~~~f~~~~~~ 637 (904)
+|||+|||. +|||+||++||++||+||||+|+|||+..+. .+.+..+.+. ..|+ .+...+.+
T Consensus 228 a~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~--~~~~~~~~~~d~~~yy---------~~~~~g~~ 296 (658)
T PRK03705 228 ALDPAYASGPETALDEFRDAVKALHKAGIEVILDVVFNHSAELDL--DGPTLSLRGIDNRSYY---------WIREDGDY 296 (658)
T ss_pred ccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCC--CCcchhcccCCCccce---------EECCCCCc
Confidence 999999995 7999999999999999999999999996431 1222112110 0111 11122223
Q ss_pred CCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEeccccccc--cchHHH--HHHhc-----CCC-EEEEeecC
Q 002585 638 SSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW--GGYVKD--YLEAT-----EPY-FAVGEYWD 707 (904)
Q Consensus 638 ~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~--~~f~~~--~~~~~-----~p~-~liGE~w~ 707 (904)
..|.+ ..+++|+++|+||++|+++++||+++|||||||||+|.++. ..|++. +++++ .++ +++||.|+
T Consensus 297 ~~~~g--~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~ai~~d~vl~~~~ligE~Wd 374 (658)
T PRK03705 297 HNWTG--CGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFRQDAPLFTAIQNDPVLSQVKLIAEPWD 374 (658)
T ss_pred CCCCC--ccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccchhhHHHHHHhhCccccceEEEEeccc
Confidence 22322 35789999999999999999999999999999999998775 233322 33333 335 69999998
Q ss_pred CC--CcccccC----CCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCccee
Q 002585 708 SL--SYTYGEM----DHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVT 781 (904)
Q Consensus 708 ~~--~~l~g~m----ny~~~~~~~~i~~~l~~~~g~~~~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vn 781 (904)
.. .+..+.+ ....+.+|+.|++|+.+..+... + ... .+.+. ..+.. ...+.|.+.||
T Consensus 375 ~~~~~~~~g~~~~~~~~~Nd~fRd~ir~f~~~~~~~~~--~-----~~~-~l~gs--~~~~~-------~~~~~p~~siN 437 (658)
T PRK03705 375 IGPGGYQVGNFPPPFAEWNDHFRDAARRFWLHGDLPLG--E-----FAG-RFAAS--SDVFK-------RNGRLPSASIN 437 (658)
T ss_pred CCCChhhhcCCCcceEEEchHHHHHHHHHHccCCCcHH--H-----HHH-HHhcc--hhhcc-------ccCCCCCeEEE
Confidence 64 2322221 11224568899988764332111 1 111 11110 00000 01235778999
Q ss_pred ecccCCCCCccCCCCC--------------------------------------ChhHHHHHHHHHHhCCCeeeeecCCh
Q 002585 782 FIENHDTGSTQGHWRF--------------------------------------PGGREMQGYAYILTHPGTPSVFYDHI 823 (904)
Q Consensus 782 flenHDt~R~~t~~~~--------------------------------------~~~~~klA~allltlPGiP~IYyGdE 823 (904)
|+++||+.++...+.. ..++.|+|++++|+++|+||||||||
T Consensus 438 yv~~HD~~TL~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~~GdE 517 (658)
T PRK03705 438 LVTAHDGFTLRDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLLAGDE 517 (658)
T ss_pred EEEeCCCccHHHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHHhhHH
Confidence 9999999665432100 02467899999999999999999999
Q ss_pred h--------------------HH------HHHHHHHHHHHHHhCccccCCCe--------eEEeeCC------------C
Q 002585 824 F--------------------SH------YRQEIEALLSVRKRNKIHCRSRV--------EIVKAER------------D 857 (904)
Q Consensus 824 ~--------------------~W------l~~~~r~Li~lRk~~paL~~G~~--------~~l~~~~------------~ 857 (904)
| +| +++|+|+||+|||+||+|+..++ .++..++ .
T Consensus 518 ~grtq~G~nN~y~~~~~i~~~dW~~~~~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~w~~~~~ 597 (658)
T PRK03705 518 HGHSQHGNNNAYCQDNALTWLDWSQADRGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPLSADEWQQGPK 597 (658)
T ss_pred hccCCCCCCCCccCCCCccccccchhhhHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcCChhHhCCcce
Confidence 6 25 99999999999999999975443 3443322 3
Q ss_pred EEEEEECCEEEEEEeCCCCCCC--CCCCCeEEE
Q 002585 858 VYAAIIDEKVAMKLGPGHYEPP--SGSQNWSFV 888 (904)
Q Consensus 858 v~a~~r~~~vlvvlnn~~~~~~--~g~~~~~~~ 888 (904)
.+++...+.++|++|....... .+.+.|.+.
T Consensus 598 ~~~~~~~~~~~v~~N~~~~~~~~~lp~~~w~~~ 630 (658)
T PRK03705 598 QLQILLSDRWLIAINATLEVTEIVLPEGEWHAI 630 (658)
T ss_pred EEEEEECCCEEEEECCCCCCeEEECCCcceEEE
Confidence 3555556667777776543321 112456666
No 17
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=7.1e-46 Score=467.01 Aligned_cols=318 Identities=20% Similarity=0.235 Sum_probs=227.8
Q ss_pred CCCCceeeeecccccCCCCCCCHHHHHHHHH------HHHHcCCCEEEeCCCcCCC-----------CCCCCCcccCCCc
Q 002585 504 TGTGFEILCQGFNWESHKSGRWYMELKEKAT------ELSSLGFSVIWLPPPTESV-----------SPEGYMPRDLYNL 566 (904)
Q Consensus 504 ~~~~y~i~~~~F~Wd~~~~GGdl~GI~ekLd------YLk~LGVnaI~L~PIfes~-----------s~hGYd~~Dy~~I 566 (904)
+...|++++++|+...+..||+++|+.++|+ |||+||||+|||||||++. .+|||++.||++|
T Consensus 158 d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~ 237 (1221)
T PRK14510 158 DSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAP 237 (1221)
T ss_pred cCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCc
Confidence 5567999999998544445666666666655 9999999999999999985 3588999999999
Q ss_pred CCCCC--CHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCCCcccCCCC--CCCCCCCccCCCCCCCCCCCCCCCCC
Q 002585 567 SSRYG--NIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGR--LNWDDRAVVADDPHFQGRGNKSSGDN 642 (904)
Q Consensus 567 Dp~lG--t~edlk~LV~aAH~~GIkVILD~V~NHt~~~~~~~~g~~~~y~g~--~~W~~~~~~~~~~~f~~~~~~~~~~~ 642 (904)
||+|| +.+|||+||++||++||+||||+|+|||+.++.. +....+.+. ..|+.. . -.....|..+++
T Consensus 238 dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~--~p~~~~~~~d~~~yy~~--~-----~~~~~~y~~~~G 308 (1221)
T PRK14510 238 DPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHY--GPTLSAYGSDNSPYYRL--E-----PGNPKEYENWWG 308 (1221)
T ss_pred ChhhccCcHHHHHHHHHHHHHCCCEEEEEEccccccCCCCC--CCcccccCCCCCCceEe--c-----CCCCCcccCCCC
Confidence 99999 9999999999999999999999999999976532 110001110 111100 0 001223444555
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEecccccc---ccchHHHH---HHhcCCC-EE-----EEeecCCCC
Q 002585 643 FHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF---WGGYVKDY---LEATEPY-FA-----VGEYWDSLS 710 (904)
Q Consensus 643 ~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~---~~~f~~~~---~~~~~p~-~l-----iGE~w~~~~ 710 (904)
+..++ |+++|+|+++|+++++||++ +||||||||+|.++ +.+|++++ +++++++ ++ |||.|+..+
T Consensus 309 ~gn~~--n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d~~l~~~~ligE~Wd~~~ 385 (1221)
T PRK14510 309 CGNLP--NLERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPVLRRLKMIAEVWDDGL 385 (1221)
T ss_pred CCCcc--ccCCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHHHHHHHHHHhCCCcCcccCcEEEecccCCC
Confidence 55554 55599999999999999996 99999999999999 88887654 5566666 44 999998642
Q ss_pred --ccc-------ccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCccee
Q 002585 711 --YTY-------GEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVT 781 (904)
Q Consensus 711 --~l~-------g~mny~~~~~~~~i~~~l~~~~g~~~~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vn 781 (904)
+.. +.|||. +++.|++|+.+..+.. ..+...+.+. .++.. .....|..+||
T Consensus 386 ~~~~~g~f~~~~~~~N~~---frd~vr~f~~g~~~~~--------~~~a~~l~gs--~d~~~-------~~~~~~~~~iN 445 (1221)
T PRK14510 386 GGYQYGKFPQYWGEWNDP---LRDIMRRFWLGDIGMA--------GELATRLAGS--ADIFP-------HRRRNFSRSIN 445 (1221)
T ss_pred CccccCCCCcceeeeccH---HHHHHHHHhcCCCchH--------HHHHHHHhCc--HhhcC-------ccCCCcccceE
Confidence 221 335554 4788888876532211 0111111110 00000 00234567899
Q ss_pred ecccCCCCCccCCCCC--------------------------------------ChhHHHHHHHHHHhCCCeeeeecCCh
Q 002585 782 FIENHDTGSTQGHWRF--------------------------------------PGGREMQGYAYILTHPGTPSVFYDHI 823 (904)
Q Consensus 782 flenHDt~R~~t~~~~--------------------------------------~~~~~klA~allltlPGiP~IYyGdE 823 (904)
|++|||+.|+.+.+.. ..+++++|++++||+||+||||||||
T Consensus 446 fi~~HD~~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~Iy~GdE 525 (1221)
T PRK14510 446 FITAHDGFTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPMLYYGDE 525 (1221)
T ss_pred EEeeCCchHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEEecchh
Confidence 9999999997654331 12467999999999999999999999
Q ss_pred hH--------------------H------HHHHHHHHHHHHHhCccccCCCeeEEe
Q 002585 824 FS--------------------H------YRQEIEALLSVRKRNKIHCRSRVEIVK 853 (904)
Q Consensus 824 ~~--------------------W------l~~~~r~Li~lRk~~paL~~G~~~~l~ 853 (904)
++ | +++|||+||+|||++|+|+.|++....
T Consensus 526 ~g~tq~Gn~n~y~~~~~r~~~~W~~~~~~l~~f~k~Li~lRk~~~~L~~g~~~~~~ 581 (1221)
T PRK14510 526 AGRSQNGNNNGYAQDNNRGTYPWGNEDEELLSFFRRLIKLRREYGVLRQGEFSSGT 581 (1221)
T ss_pred cccccCCCCCCCCCCCccccCCcccccHHHHHHHHHHHHHHHhChhhccCccccCc
Confidence 74 5 999999999999999999999887654
No 18
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3e-45 Score=445.36 Aligned_cols=334 Identities=17% Similarity=0.223 Sum_probs=225.9
Q ss_pred CCCCceeeeecccccCCCC-CCCHHHHHHHH-HHHHHcCCCEEEeCCCcCCC--CCCCCCcccCCCcCCCCCCHHHHHHH
Q 002585 504 TGTGFEILCQGFNWESHKS-GRWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDV 579 (904)
Q Consensus 504 ~~~~y~i~~~~F~Wd~~~~-GGdl~GI~ekL-dYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edlk~L 579 (904)
....||+++++|..+.... -|+|+||+++| ||||+||||+||||||++++ .+|||++.||++|||+|||++|||+|
T Consensus 241 ~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~l 320 (726)
T PRK05402 241 PISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYF 320 (726)
T ss_pred CcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHH
Confidence 4567999999987431221 28999999996 99999999999999999987 57999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEeecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHH
Q 002585 580 VNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKD 659 (904)
Q Consensus 580 V~aAH~~GIkVILD~V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~ 659 (904)
|++||++||+||||+|+||++.++.. ...|++...|.. . + ...+.+..| +..++|+.+|+||++
T Consensus 321 V~~~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~~~~y~~-~----~---~~~~~~~~w----~~~~~n~~~~~v~~~ 384 (726)
T PRK05402 321 VDACHQAGIGVILDWVPAHFPKDAHG----LARFDGTALYEH-A----D---PREGEHPDW----GTLIFNYGRNEVRNF 384 (726)
T ss_pred HHHHHHCCCEEEEEECCCCCCCCccc----hhccCCCcceec-c----C---CcCCccCCC----CCccccCCCHHHHHH
Confidence 99999999999999999999876431 111222100100 0 0 000111111 223689999999999
Q ss_pred HHHHHHHHHhccCccEEEecccccc------------------------ccchHHHHHH---hcCCC-EEEEeecCCCCc
Q 002585 660 IKEWLCWLRNEIGYDGWRLDFVRGF------------------------WGGYVKDYLE---ATEPY-FAVGEYWDSLSY 711 (904)
Q Consensus 660 i~~~l~~Wi~e~GIDGfRlD~a~~~------------------------~~~f~~~~~~---~~~p~-~liGE~w~~~~~ 711 (904)
|++++++|+++|||||||||++.++ ..+||+++.+ +.+|+ ++|||.+...+.
T Consensus 385 l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE~~~~~~~ 464 (726)
T PRK05402 385 LVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAEESTAWPG 464 (726)
T ss_pred HHHHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCcC
Confidence 9999999999999999999987543 1357776654 44677 799997653211
Q ss_pred -----cccc--CCCCch-HHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeec
Q 002585 712 -----TYGE--MDHNQD-AHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFI 783 (904)
Q Consensus 712 -----l~g~--mny~~~-~~~~~i~~~l~~~~g~~~~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vnfl 783 (904)
..+. ++|..+ .+...+.+|+...... ..+... .+. . ..+..+..+ ++++
T Consensus 465 ~~~~~~~~G~gfd~~wn~~~~~~~l~~~~~~~~~-~~~~~~---~~~-------~-----------~~~~~~~e~-~~l~ 521 (726)
T PRK05402 465 VTRPTEEGGLGFGYKWNMGWMHDTLDYMERDPIY-RKYHHN---ELT-------F-----------SLLYAYSEN-FVLP 521 (726)
T ss_pred ccccccCCCCCCCceecCCcchHHHHHHhhCccc-cccccc---chh-------H-----------HHhHhhhcc-ccCC
Confidence 0111 111100 0112233333211000 000000 000 0 000011111 3578
Q ss_pred ccCCCC-----CccCCCCCC----hhHHHHHHHHHHhCCCeeeeecCChhH------------H----------HHHHHH
Q 002585 784 ENHDTG-----STQGHWRFP----GGREMQGYAYILTHPGTPSVFYDHIFS------------H----------YRQEIE 832 (904)
Q Consensus 784 enHDt~-----R~~t~~~~~----~~~~klA~allltlPGiP~IYyGdE~~------------W----------l~~~~r 832 (904)
+|||+. |+...+.++ .+++|++++++||+||+||||||+|++ | ++++||
T Consensus 522 ~sHD~~~~g~~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~k 601 (726)
T PRK05402 522 LSHDEVVHGKGSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREWNHDASLDWHLLDFPWHRGVQRLVR 601 (726)
T ss_pred CCCceeeeCcccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCCCccCcCCccccCCcchHHHHHHHH
Confidence 999995 444444433 256899999999999999999999963 5 889999
Q ss_pred HHHHHHHhCccccCC-----CeeEEee---CCCEEEEEEC-----CEEEEEEeCCCC
Q 002585 833 ALLSVRKRNKIHCRS-----RVEIVKA---ERDVYAAIID-----EKVAMKLGPGHY 876 (904)
Q Consensus 833 ~Li~lRk~~paL~~G-----~~~~l~~---~~~v~a~~r~-----~~vlvvlnn~~~ 876 (904)
+|++||+++|+|+.| .++++.. ++++++|.|. +.++||+|.++.
T Consensus 602 ~Li~Lr~~~~aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~vlvv~N~~~~ 658 (726)
T PRK05402 602 DLNHLYRAEPALHELDFDPEGFEWIDADDAENSVLSFLRRGKDDGEPLLVVCNFTPV 658 (726)
T ss_pred HHHHHHHhChhhhccccCcCCeeEEecccCCCCEEEEEEecCCCCCeEEEEEeCCCC
Confidence 999999999999765 4555654 3479999982 568888888764
No 19
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=9.7e-44 Score=423.26 Aligned_cols=337 Identities=16% Similarity=0.117 Sum_probs=224.0
Q ss_pred CCCceeeeecccccCCCCCCCHHHHHHHH-HHHHHcCCCEEEeCCCcCCC--CCCCCCcccCCCcCCCCCCHHHHHHHHH
Q 002585 505 GTGFEILCQGFNWESHKSGRWYMELKEKA-TELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVN 581 (904)
Q Consensus 505 ~~~y~i~~~~F~Wd~~~~GGdl~GI~ekL-dYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edlk~LV~ 581 (904)
...||+++.+|.....+.-|+|++++++| +|||+||||+|+||||++++ .+|||++.+||+|+++|||++|||+||+
T Consensus 145 ~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~ 224 (639)
T PRK14706 145 ISIYEVHVGSWARRDDGWFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVN 224 (639)
T ss_pred cEEEEEehhhcccCCCCCccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHH
Confidence 56799999998643211126999999997 89999999999999999975 6799999999999999999999999999
Q ss_pred HHHHcCCEEEEEeecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHH
Q 002585 582 KFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIK 661 (904)
Q Consensus 582 aAH~~GIkVILD~V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~ 661 (904)
+||++||+||||+|+||++.++.. . ..|+|...+.... ...+.. ..|.+ ..+|+.+++||++|+
T Consensus 225 ~~H~~gi~VilD~v~nH~~~~~~~---l-~~~dg~~~y~~~~--------~~~g~~---~~w~~-~~~~~~~~eVr~~l~ 288 (639)
T PRK14706 225 HLHGLGIGVILDWVPGHFPTDESG---L-AHFDGGPLYEYAD--------PRKGYH---YDWNT-YIFDYGRNEVVMFLI 288 (639)
T ss_pred HHHHCCCEEEEEecccccCcchhh---h-hccCCCcceeccC--------CcCCcC---CCCCC-cccCCCCHHHHHHHH
Confidence 999999999999999999976431 1 1122211010000 000111 11222 248999999999999
Q ss_pred HHHHHHHhccCccEEEeccccccc----------------------cchHHHHH---HhcCCC-EEEEeecCCCCccccc
Q 002585 662 EWLCWLRNEIGYDGWRLDFVRGFW----------------------GGYVKDYL---EATEPY-FAVGEYWDSLSYTYGE 715 (904)
Q Consensus 662 ~~l~~Wi~e~GIDGfRlD~a~~~~----------------------~~f~~~~~---~~~~p~-~liGE~w~~~~~l~g~ 715 (904)
+++++|+++|||||||+|++.++- ..|++.+. ++.+|+ ++|||.|.+-+.+...
T Consensus 289 ~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~ 368 (639)
T PRK14706 289 GSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVP 368 (639)
T ss_pred HHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcCcccc
Confidence 999999999999999999987651 24665544 344677 7999998752211100
Q ss_pred CCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhh--hcCCCCCCcCCCCCcceeecccCCCCCccC
Q 002585 716 MDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSD--EKGKPPGVVGWWPSRAVTFIENHDTGSTQG 793 (904)
Q Consensus 716 mny~~~~~~~~i~~~l~~~~g~~~~fdf~l~~~l~~~l~~~~~~~l~~--~~~~~~~~~~~~P~~~vnflenHDt~R~~t 793 (904)
.. .+.+++..++..+...+...+.....++-.. .+.. ..+..+..+ ..|++|||+.|...
T Consensus 369 --------------~~-~G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~~~~lt~--~~~y~~~e~-~il~~SHDev~~~k 430 (639)
T PRK14706 369 --------------TP-YGLGFDYKWAMGWMNDTLAYFEQDPLWRKYHHHKLTF--FNVYRTSEN-YVLAISHDEVVHLK 430 (639)
T ss_pred --------------cC-CCCccccEeccHHHHHHHHHhccCchhhhhchhccch--hhhhhcccc-EecCCCCccccCCc
Confidence 00 0111222222222111111111111111000 0000 000011112 23789999987532
Q ss_pred -----CCCCC----hhHHHHHHHHHHhCCCeeeeecCChhH------------H----------HHHHHHHHHHHHHhCc
Q 002585 794 -----HWRFP----GGREMQGYAYILTHPGTPSVFYDHIFS------------H----------YRQEIEALLSVRKRNK 842 (904)
Q Consensus 794 -----~~~~~----~~~~klA~allltlPGiP~IYyGdE~~------------W----------l~~~~r~Li~lRk~~p 842 (904)
...++ .++++++++++||+||+||||||+||+ | +.+++|+|++||+++|
T Consensus 431 ~sl~~k~~g~~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~ew~~~~~l~W~l~~~~~~~~l~~~~k~L~~L~k~~p 510 (639)
T PRK14706 431 KSMVMKMPGDWYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGTEWNHDASLPWYLTDVPDHRGVMNLVRRLNQLYRERP 510 (639)
T ss_pred cchHhHcCCCHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcccCCCCcccCCHHHHHHHHHHHHHHHHHHhCH
Confidence 12222 366899999999999999999999975 4 7889999999999999
Q ss_pred cccCCC-----eeEEee---CCCEEEEEEC-----CEEEEEEeCCC
Q 002585 843 IHCRSR-----VEIVKA---ERDVYAAIID-----EKVAMKLGPGH 875 (904)
Q Consensus 843 aL~~G~-----~~~l~~---~~~v~a~~r~-----~~vlvvlnn~~ 875 (904)
+|..|+ ++++.. +++++||.|. +.++||+|.+.
T Consensus 511 aL~~gd~~~~~f~wi~~~d~~~~VlaF~R~~~~~~~~vlvV~Nfs~ 556 (639)
T PRK14706 511 DWHRGDKREEGLYWVSADDTDNSVYAYVRRDSESGAWSLAVANLTP 556 (639)
T ss_pred HHhhCCCCCCCeEEEEeecCCCCEEEEEEecCCCCeeEEEEEeCCC
Confidence 998776 555544 3579999992 23788888776
No 20
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=1.1e-42 Score=428.60 Aligned_cols=348 Identities=20% Similarity=0.292 Sum_probs=231.2
Q ss_pred CCCCCCceeeeecccccCCC------CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCC--------------------CCC
Q 002585 502 PGTGTGFEILCQGFNWESHK------SGRWYMELKEKATELSSLGFSVIWLPPPTES--------------------VSP 555 (904)
Q Consensus 502 ~~~~~~y~i~~~~F~Wd~~~------~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes--------------------~s~ 555 (904)
..+...||+++++|..+... ..|+|+|++++|||||+||||+|||||||+. ..+
T Consensus 449 ~~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~yn 528 (1111)
T TIGR02102 449 REDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYN 528 (1111)
T ss_pred ccceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccc
Confidence 34677899999999854321 2499999999999999999999999999862 135
Q ss_pred CCCCcccCCCcCCCCCC--------HHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCCCcccCCCC-CCCCCCCccC
Q 002585 556 EGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGR-LNWDDRAVVA 626 (904)
Q Consensus 556 hGYd~~Dy~~IDp~lGt--------~edlk~LV~aAH~~GIkVILD~V~NHt~~~~~~~~g~~~~y~g~-~~W~~~~~~~ 626 (904)
|||+|.+||+++++||+ .+|||+||++||++||+||||+|+|||+..+. |.+. ..|+.+.
T Consensus 529 WGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~~--------f~~~~p~Yy~~~--- 597 (1111)
T TIGR02102 529 WGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVYI--------FEDLEPNYYHFM--- 597 (1111)
T ss_pred cCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEeccccccccccc--------ccccCCCceEee---
Confidence 99999999999999998 48999999999999999999999999987643 2111 1111100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEeccccccccchHHHHHH---hcCCC-EEE
Q 002585 627 DDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE---ATEPY-FAV 702 (904)
Q Consensus 627 ~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~~f~~~~~~---~~~p~-~li 702 (904)
...+.... ..+..++|.++++||++|+++++||+++|||||||||++.+++.++++++.. +++|. +++
T Consensus 598 -----~~~G~~~~---~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~~~~~~~~l~~~dP~~~li 669 (1111)
T TIGR02102 598 -----DADGTPRT---SFGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAINPNIIMI 669 (1111)
T ss_pred -----CCCCCccc---ccCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHhCcCEEEE
Confidence 01111110 1124579999999999999999999999999999999999988888776654 45787 799
Q ss_pred EeecCCCCcccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhh--------ch---hhhhhhhhcCCCC-C
Q 002585 703 GEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALD--------RC---EYWRLSDEKGKPP-G 770 (904)
Q Consensus 703 GE~w~~~~~l~g~mny~~~~~~~~i~~~l~~~~g~~~~fdf~l~~~l~~~l~--------~~---~~~~l~~~~~~~~-~ 770 (904)
||.|+... +..++... .+...++.... ..+.|+..++..++..+. .+ ....+...+...+ .
T Consensus 670 GE~W~~~~---g~~~~~~~---~~~~~~~~~~~-~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~g~~~~ 742 (1111)
T TIGR02102 670 GEGWRTYA---GDEGDPVQ---AADQDWMKYTE-TVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIKAQPHN 742 (1111)
T ss_pred EecccccC---CCCccccc---ccchhhHhcCC-cccEecHHHHHHHhcccccccccccccCCcccHHHHHHhhcCCccc
Confidence 99998510 00000000 00001111110 122333333222221100 00 0111111111111 1
Q ss_pred CcCCCCCcceeecccCCCCCccCCCCC--------------ChhHHHHHHHHHHhCCCeeeeecCChh------------
Q 002585 771 VVGWWPSRAVTFIENHDTGSTQGHWRF--------------PGGREMQGYAYILTHPGTPSVFYDHIF------------ 824 (904)
Q Consensus 771 ~~~~~P~~~vnflenHDt~R~~t~~~~--------------~~~~~klA~allltlPGiP~IYyGdE~------------ 824 (904)
.....|.+.|||+++||+.++...+.. ..++.++|.+++||++|+||||+||||
T Consensus 743 ~~~~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~~~~e~~~~~~~r~rla~~llllSQGiPfi~aGqEf~RTK~gnnn~y~ 822 (1111)
T TIGR02102 743 FEADSPGDVVQYIAAHDNLTLHDVIAQSIKKDPKVAENQEEIHRRIRLGNLMVLTSQGTAFIHSGQEYGRTKQFRNPDYR 822 (1111)
T ss_pred cccCCcccEEEEEecCCCCchHhhhhhccccCcccccchHHHHHHHHHHHHHHHHhCcHhhhhcchhhhcccCCCccccc
Confidence 112467889999999999987332211 023778999999999999999999884
Q ss_pred ------------------------------------------HH--------------HHHHHHHHHHHHHhCccccCCC
Q 002585 825 ------------------------------------------SH--------------YRQEIEALLSVRKRNKIHCRSR 848 (904)
Q Consensus 825 ------------------------------------------~W--------------l~~~~r~Li~lRk~~paL~~G~ 848 (904)
+| +++|+|.||+|||++|+|+.++
T Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~~y~~~LI~lRk~~~~fr~~~ 902 (1111)
T TIGR02102 823 TPVSEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDADAYPINNKTRDYTAGLIELRRSTDAFRLGS 902 (1111)
T ss_pred ccccccccccccccccccccccccccccccccccCCCccceecccccccccccchhHHHHHHHHHHHHHHhcCccccccc
Confidence 13 4899999999999999997655
Q ss_pred e-------eEEeeC--------CCEEEEEE----CCEEEEEEeCCC
Q 002585 849 V-------EIVKAE--------RDVYAAII----DEKVAMKLGPGH 875 (904)
Q Consensus 849 ~-------~~l~~~--------~~v~a~~r----~~~vlvvlnn~~ 875 (904)
. .++... +.+++|.. ++.++|++|...
T Consensus 903 ~~~i~~~v~~~~~~g~~~~~~~~~~ia~~~~~~~~~~~~V~~Na~~ 948 (1111)
T TIGR02102 903 KALVDRKVTLITIPGQNEIEEEDLVVAYQIVATNGDIYAVFVNADD 948 (1111)
T ss_pred hhhhcCcEEEECCCCCcccccCCcEEEEEEecCCCCeEEEEECCCC
Confidence 3 333332 35677764 245666666543
No 21
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=2.9e-42 Score=393.66 Aligned_cols=332 Identities=15% Similarity=0.158 Sum_probs=235.6
Q ss_pred eeeecccccCCCCC-CCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCC
Q 002585 510 ILCQGFNWESHKSG-RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM 588 (904)
Q Consensus 510 i~~~~F~Wd~~~~G-Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GI 588 (904)
+.+..|. |+.+.| |+|+|++++ ||++ ||++|||+|+|+++++|||++.||++|||+|||++||++|+++ |
T Consensus 3 v~lity~-Ds~g~glgdl~g~l~~--yL~~-~v~~i~LlPffps~sD~GYdv~DY~~VDP~~Gt~~Df~~L~~~-----~ 73 (470)
T TIGR03852 3 AMLITYA-DSLGKNLKELNKVLEN--YFKD-AVGGVHLLPFFPSTGDRGFAPMDYTEVDPAFGDWSDVEALSEK-----Y 73 (470)
T ss_pred ceEEEec-CCCCCChhhHHHHHHH--HHHH-hCCEEEECCCCcCCCCCCcCchhhceeCcccCCHHHHHHHHHh-----h
Confidence 4555665 444333 677777766 9999 7999999999999999999999999999999999999999997 8
Q ss_pred EEEEEeecccccccCCCC-----CCCcccCCCCCC-----CCCCCccCC----------CC---C--CC-CCCCCCCCCC
Q 002585 589 KILGDVVLNHRCAHYQNQ-----NGVWNIFGGRLN-----WDDRAVVAD----------DP---H--FQ-GRGNKSSGDN 642 (904)
Q Consensus 589 kVILD~V~NHt~~~~~~~-----~g~~~~y~g~~~-----W~~~~~~~~----------~~---~--f~-~~~~~~~~~~ 642 (904)
+||+|+|+||||.+|+|+ ++.-++|.+.+- |.+...... .+ . +. +.+.+....+
T Consensus 74 kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF 153 (470)
T TIGR03852 74 YLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTF 153 (470)
T ss_pred hHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccC
Confidence 999999999999999863 222344543322 221101000 01 1 11 1111111223
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEeccccccccc--------------hHHHHHHhc-CCC-EEEEeec
Q 002585 643 FHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGG--------------YVKDYLEAT-EPY-FAVGEYW 706 (904)
Q Consensus 643 ~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~~--------------f~~~~~~~~-~p~-~liGE~w 706 (904)
...+||||+.||.|+++|.+++++|+ +.|||||||||+..+|++ +++.+.+.+ .++ ++|+|++
T Consensus 154 ~~~QpDLN~~np~v~e~i~~il~fwl-~~GvdgfRLDAv~~l~K~~Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll~E~~ 232 (470)
T TIGR03852 154 GEEQIDLDVTSETTKRFIRDNLENLA-EHGASIIRLDAFAYAVKKLGTNDFFVEPEIWELLDEVRDILAPTGAEILPEIH 232 (470)
T ss_pred CccccccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecchhhcccCCCCcccCChhHHHHHHHHHHHhccCCCEEEeHhh
Confidence 48899999999999999999999999 899999999999655432 333333322 455 7999997
Q ss_pred CCCCcccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecccC
Q 002585 707 DSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENH 786 (904)
Q Consensus 707 ~~~~~l~g~mny~~~~~~~~i~~~l~~~~g~~~~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vnflenH 786 (904)
+..++. + ...+....+|+|++...+-.++..++...+...+. ..|..++|||+||
T Consensus 233 ~~~~~~-----------------~-~~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~-------~~p~~~~nfL~sH 287 (470)
T TIGR03852 233 EHYTIQ-----------------F-KIAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLR-------KSPMKQFTTLDTH 287 (470)
T ss_pred hhcccc-----------------c-ccccceeEEccCccchhhHHHhhccCHHHHHHHHH-------hCcccceEEeecC
Confidence 642210 0 10134567899999888877777776655554432 2455668999999
Q ss_pred CCC--------------------------Cc---------------------cCCCCCChhHHHHHHHHHHhCCCeeeee
Q 002585 787 DTG--------------------------ST---------------------QGHWRFPGGREMQGYAYILTHPGTPSVF 819 (904)
Q Consensus 787 Dt~--------------------------R~---------------------~t~~~~~~~~~klA~allltlPGiP~IY 819 (904)
|.- +. ...++++.+++.+|.+++|++||+|.||
T Consensus 288 Dgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~~a~ai~~~lpGiP~iY 367 (470)
T TIGR03852 288 DGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYLLARAIQFFAPGIPQVY 367 (470)
T ss_pred CCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHHHHHHHHHcCCCCceEE
Confidence 981 00 0112335678899999999999999999
Q ss_pred cCChhH---------------------H------------HHHHHHHHHHHHHhCccccC-CCeeEEeeCCCEEEEEE--
Q 002585 820 YDHIFS---------------------H------------YRQEIEALLSVRKRNKIHCR-SRVEIVKAERDVYAAII-- 863 (904)
Q Consensus 820 yGdE~~---------------------W------------l~~~~r~Li~lRk~~paL~~-G~~~~l~~~~~v~a~~r-- 863 (904)
||+|++ | +..-+.+||++|+++||+.- |.+.+...++.++++.|
T Consensus 368 y~~llg~~nD~~~~~rt~~~R~Inr~~~~~~~i~~~l~~~v~~~L~~li~~R~~~~aF~~~g~~~~~~~~~~~~~~~r~~ 447 (470)
T TIGR03852 368 YVGLLAGKNDIELLEETKEGRNINRHYYTLEEIAEEVKRPVVAKLLNLLRFRNTSKAFDLDGSIDIETPSENQIEIVRTN 447 (470)
T ss_pred echhhcCCchHHHHHhcCCCCCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhhCcccCCCCceEecCCCCcEEEEEEEc
Confidence 999863 2 45556668999999999975 99987777889999977
Q ss_pred ---CCEEEEEEeCCCC
Q 002585 864 ---DEKVAMKLGPGHY 876 (904)
Q Consensus 864 ---~~~vlvvlnn~~~ 876 (904)
+.++.+++|-++.
T Consensus 448 ~~~~~~~~~~~n~~~~ 463 (470)
T TIGR03852 448 KDGGNKAILTANLKTK 463 (470)
T ss_pred CCCCceEEEEEecCCC
Confidence 2345556665543
No 22
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.2e-40 Score=396.07 Aligned_cols=331 Identities=19% Similarity=0.224 Sum_probs=222.9
Q ss_pred CCCCCceeeeecccccCCCCCCCHHHHHHH-HHHHHHcCCCEEEeCCCcCCC--CCCCCCcccCCCcCCCCCCHHHHHHH
Q 002585 503 GTGTGFEILCQGFNWESHKSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDV 579 (904)
Q Consensus 503 ~~~~~y~i~~~~F~Wd~~~~GGdl~GI~ek-LdYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edlk~L 579 (904)
.....||+++.+|+-+..+..+++++++++ |+|||+||||+||||||++++ .+|||++.+||+++|+||++++||+|
T Consensus 245 ~~~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~l 324 (730)
T PRK12568 245 APLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQF 324 (730)
T ss_pred CCcEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHH
Confidence 455679999999874332234699999998 599999999999999999987 57999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEeecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHH
Q 002585 580 VNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKD 659 (904)
Q Consensus 580 V~aAH~~GIkVILD~V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~ 659 (904)
|++||++||+||||+|+||++.+... ...|++...|.. . ++ ..+.+ ..|.++ .+|+.+|+||++
T Consensus 325 V~~~H~~Gi~VIlD~V~nH~~~d~~~----l~~fdg~~~Ye~-~----d~---~~g~~---~~W~~~-~~N~~~peVr~~ 388 (730)
T PRK12568 325 VDACHRAGIGVILDWVSAHFPDDAHG----LAQFDGAALYEH-A----DP---REGMH---RDWNTL-IYNYGRPEVTAY 388 (730)
T ss_pred HHHHHHCCCEEEEEeccccCCccccc----cccCCCcccccc-C----CC---cCCcc---CCCCCe-ecccCCHHHHHH
Confidence 99999999999999999999976421 112322111100 0 00 00111 122222 589999999999
Q ss_pred HHHHHHHHHhccCccEEEeccccccc------------------------cchHHHHHH---hcCCC-EEEEeecCCCCc
Q 002585 660 IKEWLCWLRNEIGYDGWRLDFVRGFW------------------------GGYVKDYLE---ATEPY-FAVGEYWDSLSY 711 (904)
Q Consensus 660 i~~~l~~Wi~e~GIDGfRlD~a~~~~------------------------~~f~~~~~~---~~~p~-~liGE~w~~~~~ 711 (904)
|++++++|+++|||||||+|++..+. .+|++++.+ +..|+ ++|||.+.+-+-
T Consensus 389 li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p~ 468 (730)
T PRK12568 389 LLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPG 468 (730)
T ss_pred HHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcc
Confidence 99999999999999999999875431 247766544 44677 799998654211
Q ss_pred c-----ccc----CCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhh--hhhcCCCCCCcCCCCCcce
Q 002585 712 T-----YGE----MDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRL--SDEKGKPPGVVGWWPSRAV 780 (904)
Q Consensus 712 l-----~g~----mny~~~~~~~~i~~~l~~~~g~~~~fdf~l~~~l~~~l~~~~~~~l--~~~~~~~~~~~~~~P~~~v 780 (904)
+ .|. +.|+.. +...+++|+.... ..+- .+.+.. ++.-.|. ..+
T Consensus 469 vt~p~~~gGlGFd~kwn~g-wm~d~l~y~~~dp----------------------~~r~~~h~~ltf--~~~y~~~-e~f 522 (730)
T PRK12568 469 VTAPISDGGLGFTHKWNMG-WMHDTLHYMQRDP----------------------AERAHHHSQLTF--GLVYAFS-ERF 522 (730)
T ss_pred ccccccCCCCCcCcEeCCh-hHHHHHHHHhhCc----------------------hhhhhhhhhhhh--hhhhhhh-ccE
Confidence 1 111 111111 1222333333211 0000 000000 0000111 123
Q ss_pred eecccCCC-----CCccCCCCCCh----hHHHHHHHHHHhCCCeeeeecCChhH------------H----------HHH
Q 002585 781 TFIENHDT-----GSTQGHWRFPG----GREMQGYAYILTHPGTPSVFYDHIFS------------H----------YRQ 829 (904)
Q Consensus 781 nflenHDt-----~R~~t~~~~~~----~~~klA~allltlPGiP~IYyGdE~~------------W----------l~~ 829 (904)
.+..|||+ .++...+.++. +.+|..+++++|+||.|+||+|+||+ | +.+
T Consensus 523 vlp~SHDEvvhgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew~~~~~ldW~ll~~~~h~~~~~ 602 (730)
T PRK12568 523 VLPLSHDEVVHGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADWNHDQSLDWHLLDGARHRGMQQ 602 (730)
T ss_pred eccCCCcccccCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccccCCCCccccccCChhHHHHHH
Confidence 46789999 44444444443 45688999999999999999999974 5 888
Q ss_pred HHHHHHHHHHhCccccCC-----CeeEEeeC---CCEEEEEE-C-----CEEEEEEeCCC
Q 002585 830 EIEALLSVRKRNKIHCRS-----RVEIVKAE---RDVYAAII-D-----EKVAMKLGPGH 875 (904)
Q Consensus 830 ~~r~Li~lRk~~paL~~G-----~~~~l~~~---~~v~a~~r-~-----~~vlvvlnn~~ 875 (904)
++|.|++||+++|+|..+ .++++..+ ++|++|.| + +.++||+|.+.
T Consensus 603 ~~~dLn~ly~~~paL~~~d~~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~ 662 (730)
T PRK12568 603 LVGDLNAALRRTPALYRGTHRADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTP 662 (730)
T ss_pred HHHHHHHHHHhChhhhcccCCCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCC
Confidence 999999999999999544 46666543 47999998 2 22555555544
No 23
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=4.9e-41 Score=385.74 Aligned_cols=330 Identities=15% Similarity=0.150 Sum_probs=234.7
Q ss_pred eeeecccccCCCCCCCHHHHHHHHH-HHHHcCCCEEEeCCCcC-C-CCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHc
Q 002585 510 ILCQGFNWESHKSGRWYMELKEKAT-ELSSLGFSVIWLPPPTE-S-VSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDV 586 (904)
Q Consensus 510 i~~~~F~Wd~~~~GGdl~GI~ekLd-YLk~LGVnaI~L~PIfe-s-~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~ 586 (904)
+.+-.|. |+.. +|||+||+++|| ||++| |++|||+|+|+ + .+++||++.||++|||+|||++||++|++
T Consensus 5 ~~litY~-Ds~~-~GdL~gl~~kLd~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VDP~fGt~eDf~~L~~----- 76 (495)
T PRK13840 5 VQLITYA-DRLG-DGGLKSLTALLDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVDPRLGDWDDVKALGK----- 76 (495)
T ss_pred eEEEEec-cCCC-CCCHhHHHHHHHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcCcccCCHHHHHHHHh-----
Confidence 4444454 3322 489999999999 59999 99999999994 4 36899999999999999999999999985
Q ss_pred CCEEEEEeecccccccCCC-----CCCCcccCCCCCCCCCCC-----ccCCC-CCCC-------------CCCCCCCCCC
Q 002585 587 GMKILGDVVLNHRCAHYQN-----QNGVWNIFGGRLNWDDRA-----VVADD-PHFQ-------------GRGNKSSGDN 642 (904)
Q Consensus 587 GIkVILD~V~NHt~~~~~~-----~~g~~~~y~g~~~W~~~~-----~~~~~-~~f~-------------~~~~~~~~~~ 642 (904)
||+||+|+|+||||..|+| .+|.-++|.+.+-|.+.. .+.+. ..|. .......|..
T Consensus 77 giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~t 156 (495)
T PRK13840 77 THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTT 156 (495)
T ss_pred CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEecc
Confidence 9999999999999999997 233445554433332210 00000 0111 1111223443
Q ss_pred C-CCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEeccccccccc-------------hHHHHHHhcC--CCEEEEeec
Q 002585 643 F-HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGG-------------YVKDYLEATE--PYFAVGEYW 706 (904)
Q Consensus 643 ~-~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~~-------------f~~~~~~~~~--p~~liGE~w 706 (904)
| ..+||||+.||+|+++|.+++++|+ +.|||||||||+..++++ |++.+.+.++ ...+|+|+|
T Consensus 157 F~~~QpDLN~~NP~V~~~i~~il~fwl-~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~~ll~Ei~ 235 (495)
T PRK13840 157 FTPQQIDIDVHSAAGWEYLMSILDRFA-ASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGMEVLVEIH 235 (495)
T ss_pred CCcccceeCCCCHHHHHHHHHHHHHHH-HCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCCEEEEeCc
Confidence 4 7899999999999999999999999 899999999999766542 5555443332 226899987
Q ss_pred CCCCcccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecccC
Q 002585 707 DSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENH 786 (904)
Q Consensus 707 ~~~~~l~g~mny~~~~~~~~i~~~l~~~~g~~~~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vnflenH 786 (904)
.... . ...+ .+..+.+|+|+++..+..++..++...+...+. ..|..++|||.||
T Consensus 236 ~y~~----------~--~~~~------~~e~~~vYnF~Lp~ll~~aL~~~~~~~L~~~l~-------~~p~~~~n~L~~H 290 (495)
T PRK13840 236 SYYK----------T--QIEI------AKKVDRVYDFALPPLILHTLFTGDVEALAHWLE-------IRPRNAVTVLDTH 290 (495)
T ss_pred cccC----------c--cccc------cccccEEecchhhHHHHHHHHhCCchHHHHHHH-------hCCCccEEeeecC
Confidence 6411 0 0000 225678999999988888877776555544322 2377778999999
Q ss_pred CCCCc----------cCCC--------------------------------------------CCChhHHHHHHHHHHhC
Q 002585 787 DTGST----------QGHW--------------------------------------------RFPGGREMQGYAYILTH 812 (904)
Q Consensus 787 Dt~R~----------~t~~--------------------------------------------~~~~~~~klA~allltl 812 (904)
|.-.+ ...+ +.+..++.+|.+++|++
T Consensus 291 DgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ai~~~~ 370 (495)
T PRK13840 291 DGIGIIDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAARAIQFFA 370 (495)
T ss_pred CCCCcccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHHHHHHcC
Confidence 98654 1111 11234789999999999
Q ss_pred CCeeeeecCChhH-----------------------H----------HHHHHHHHHHHHHhCccccCCCeeEEeeCCCEE
Q 002585 813 PGTPSVFYDHIFS-----------------------H----------YRQEIEALLSVRKRNKIHCRSRVEIVKAERDVY 859 (904)
Q Consensus 813 PGiP~IYyGdE~~-----------------------W----------l~~~~r~Li~lRk~~paL~~G~~~~l~~~~~v~ 859 (904)
||||.||||+|++ | +++-+++||++|+++||| .|++++...+++.+
T Consensus 371 ~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l~~~v~~~l~~li~~R~~~~aF-~~~~~~~~~~~~~~ 449 (495)
T PRK13840 371 PGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEALERPVVKALNALIRFRNEHPAF-DGAFSYAADGDTSL 449 (495)
T ss_pred CCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccc-CceEEEecCCCCeE
Confidence 9999999999852 3 788899999999999999 58888866666666
Q ss_pred EEEE--C-CEEEEEEeCC
Q 002585 860 AAII--D-EKVAMKLGPG 874 (904)
Q Consensus 860 a~~r--~-~~vlvvlnn~ 874 (904)
+..+ + ....+.+|..
T Consensus 450 ~~~~~~~~~~~~~~~~~~ 467 (495)
T PRK13840 450 TLSWTAGDSSASLTLDFA 467 (495)
T ss_pred EEEEecCCceEEEEEEcc
Confidence 5554 2 2444445533
No 24
>PLN02960 alpha-amylase
Probab=100.00 E-value=6.1e-40 Score=389.92 Aligned_cols=338 Identities=16% Similarity=0.162 Sum_probs=218.1
Q ss_pred CCCCceeeeecccccCCCCCCCHHHHHHH-HHHHHHcCCCEEEeCCCcCCC--CCCCCCcccCCCcCCCCCCHHHHHHHH
Q 002585 504 TGTGFEILCQGFNWESHKSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVV 580 (904)
Q Consensus 504 ~~~~y~i~~~~F~Wd~~~~GGdl~GI~ek-LdYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edlk~LV 580 (904)
....||+++..|. ..+.-|+|++++++ |+|||+||||+||||||+++. .+|||++.+||+|+++|||+++||+||
T Consensus 395 ~~vIYElHvg~~~--~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LV 472 (897)
T PLN02960 395 SLRIYECHVGISG--SEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLV 472 (897)
T ss_pred CcEEEEEeccccc--CCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHH
Confidence 4567888887654 22223899999976 999999999999999999876 679999999999999999999999999
Q ss_pred HHHHHcCCEEEEEeecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCC-CCCCCCCCCCCCCCCccCCCCHHHHHH
Q 002585 581 NKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRKD 659 (904)
Q Consensus 581 ~aAH~~GIkVILD~V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~-~~~~~~~~~~~~~lpdlN~~np~Vr~~ 659 (904)
++||++||+||||+|+||++.++.+ +. ..|+|..+++ |. +...+.. ..+...+|+.+++||++
T Consensus 473 d~aH~~GI~VILDvV~NH~~~d~~~--~L-~~FDG~~~~Y----------f~~~~~g~~~---~WG~~~fNy~~~eVr~f 536 (897)
T PLN02960 473 DEAHGLGLLVFLDIVHSYAAADEMV--GL-SLFDGSNDCY----------FHSGKRGHHK---RWGTRMFKYGDHEVLHF 536 (897)
T ss_pred HHHHHCCCEEEEEecccccCCcccc--ch-hhcCCCccce----------eecCCCCccC---CCCCcccCCCCHHHHHH
Confidence 9999999999999999999987521 11 1233211111 11 1001111 12346799999999999
Q ss_pred HHHHHHHHHhccCccEEEeccccccc-------------------------cchHHHHH---HhcCCC-EEEEeecCCCC
Q 002585 660 IKEWLCWLRNEIGYDGWRLDFVRGFW-------------------------GGYVKDYL---EATEPY-FAVGEYWDSLS 710 (904)
Q Consensus 660 i~~~l~~Wi~e~GIDGfRlD~a~~~~-------------------------~~f~~~~~---~~~~p~-~liGE~w~~~~ 710 (904)
|+++++||+++|||||||+|++..|- ..|++.+. .+..|. ++|+|...+.+
T Consensus 537 Llsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P 616 (897)
T PLN02960 537 LLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYP 616 (897)
T ss_pred HHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCC
Confidence 99999999999999999999986421 01444433 333566 79999876532
Q ss_pred cccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhch--hhhhhhhhcCCCCCCcCCCCCcceeecccCCC
Q 002585 711 YTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRC--EYWRLSDEKGKPPGVVGWWPSRAVTFIENHDT 788 (904)
Q Consensus 711 ~l~g~mny~~~~~~~~i~~~l~~~~g~~~~fdf~l~~~l~~~l~~~--~~~~l~~~~~~~~~~~~~~P~~~vnflenHDt 788 (904)
-+..-. -.++-|++...++.....+..++... .-+......+.. ......+.+.++|++|||+
T Consensus 617 ~vt~P~--------------~~GGLGFDYkwnmG~~~d~l~~l~~~~~r~~~~~~l~~s~-~~~~~~~~~~v~Y~EnHDQ 681 (897)
T PLN02960 617 GLCEPT--------------SQGGLGFDYYVNLSPSEMWLSLLENVPDQEWSMSKIVSTL-VKNKENADKMLSYAENHNQ 681 (897)
T ss_pred CccccC--------------CCCCCCcccccCCCcHHHHHHHHHhCcCCCCChhccEeee-ccCcCCcceEEEEecCcCc
Confidence 211000 00000111111222211122222110 001111111100 0012356678999999999
Q ss_pred -----CCccCCCCCC-------hh----------HHHHHHHHHHhCCCeeeeecCChhH---------------------
Q 002585 789 -----GSTQGHWRFP-------GG----------REMQGYAYILTHPGTPSVFYDHIFS--------------------- 825 (904)
Q Consensus 789 -----~R~~t~~~~~-------~~----------~~klA~allltlPGiP~IYyGdE~~--------------------- 825 (904)
.++...+... .. .+..+++++++ ||.|++|||+||+
T Consensus 682 Vv~Gkrsl~~rL~g~~~~k~~~~~~~~lRa~al~~~~rllt~~~~-Pg~pLlFMG~EFGh~e~~~~PdP~n~~tf~~s~L 760 (897)
T PLN02960 682 SISGGKSFAEILLGKNKESSPAVKELLLRGVSLHKMIRLITFTLG-GSAYLNFMGNEFGHPERVEFPRASNNFSFSLANR 760 (897)
T ss_pred cccCcccHHHHCCCchhhhhcccChhhhhhhhHHHHHHHHHHHhC-CCCCEeeCccccCChhhhhCcCCCCccccccccC
Confidence 2222222111 01 11123444454 8999999999752
Q ss_pred -H----------HHHHHHHHHHHHHhCccccCCCeeEEee--CCCEEEEEECCEEEEEEeCCCC
Q 002585 826 -H----------YRQEIEALLSVRKRNKIHCRSRVEIVKA--ERDVYAAIIDEKVAMKLGPGHY 876 (904)
Q Consensus 826 -W----------l~~~~r~Li~lRk~~paL~~G~~~~l~~--~~~v~a~~r~~~vlvvlnn~~~ 876 (904)
| +.+++|.|++||+++|+|..|...+... ++.|++|.|+ .+++|+|.+..
T Consensus 761 dW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~~~d~~~~Viaf~R~-~llvV~NFsp~ 823 (897)
T PLN02960 761 RWDLLEDGVHAHLFSFDKALMALDEKYLILSRGLPNIHHVNDTSMVISFTRG-PLLFAFNFHPT 823 (897)
T ss_pred CcccccChhHHHHHHHHHHHHHHHhcChhhcCCcceeeeecCCCCEEEEEeC-CeEEEEeCCCC
Confidence 5 8889999999999999998776555433 3479999995 57888888764
No 25
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=8.1e-40 Score=405.37 Aligned_cols=327 Identities=17% Similarity=0.231 Sum_probs=218.8
Q ss_pred CCCCceeeeecccccCCCCCCCHHHHHHH-HHHHHHcCCCEEEeCCCcCCC--CCCCCCcccCCCcCCCCCCHHHHHHHH
Q 002585 504 TGTGFEILCQGFNWESHKSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVV 580 (904)
Q Consensus 504 ~~~~y~i~~~~F~Wd~~~~GGdl~GI~ek-LdYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edlk~LV 580 (904)
....||+++.+|+ .+|+|++++++ |||||+||||+||||||++++ .+|||++.+||+++++|||++|||+||
T Consensus 747 p~~IYEvHvgsf~-----~~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lV 821 (1224)
T PRK14705 747 PMSVYEVHLGSWR-----LGLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLV 821 (1224)
T ss_pred CcEEEEEEecccc-----cCCchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHH
Confidence 3577999999986 26889999988 599999999999999999987 679999999999999999999999999
Q ss_pred HHHHHcCCEEEEEeecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHH
Q 002585 581 NKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDI 660 (904)
Q Consensus 581 ~aAH~~GIkVILD~V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i 660 (904)
++||++||+||||+|+||++.+... ...|++...|... ++ ..+.+ ..| +...+|+.+++||++|
T Consensus 822 d~~H~~GI~VILD~V~nH~~~d~~~----l~~fdg~~~y~~~-----d~---~~g~~---~~W-g~~~fn~~~~eVr~fl 885 (1224)
T PRK14705 822 DSLHQAGIGVLLDWVPAHFPKDSWA----LAQFDGQPLYEHA-----DP---ALGEH---PDW-GTLIFDFGRTEVRNFL 885 (1224)
T ss_pred HHHHHCCCEEEEEeccccCCcchhh----hhhcCCCcccccC-----Cc---ccCCC---CCC-CCceecCCCHHHHHHH
Confidence 9999999999999999999876421 0112221111100 00 00111 112 2346999999999999
Q ss_pred HHHHHHHHhccCccEEEecccccc------------------------ccchHHHHHHh---cCCC-EEEEeecCCCCcc
Q 002585 661 KEWLCWLRNEIGYDGWRLDFVRGF------------------------WGGYVKDYLEA---TEPY-FAVGEYWDSLSYT 712 (904)
Q Consensus 661 ~~~l~~Wi~e~GIDGfRlD~a~~~------------------------~~~f~~~~~~~---~~p~-~liGE~w~~~~~l 712 (904)
+++++||+++|||||||+|++..| ..+|++++.+. ..|. ++|||.+.+-+.+
T Consensus 886 i~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p~v 965 (1224)
T PRK14705 886 VANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPGV 965 (1224)
T ss_pred HHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcCc
Confidence 999999999999999999998654 12467665543 3576 8999988753211
Q ss_pred -----ccc----CCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeec
Q 002585 713 -----YGE----MDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFI 783 (904)
Q Consensus 713 -----~g~----mny~~~~~~~~i~~~l~~~~g~~~~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vnfl 783 (904)
.|- +-|+.+. ...+.+|+.... ....++.. .+. ..+... +.. .+.+.
T Consensus 966 t~p~~~GGlGFd~kWnmgw-mhd~l~Y~~~dp-~~r~~~~~---~lt--------f~~~ya----------~~e-~fvl~ 1021 (1224)
T PRK14705 966 TAPTSHGGLGFGLKWNMGW-MHDSLKYASEDP-INRKWHHG---TIT--------FSLVYA----------FTE-NFLLP 1021 (1224)
T ss_pred cccccCCCccCCcEecchh-hHHHHHHhhhCc-chhhcccc---hHH--------HHHHHH----------hhc-CEecc
Confidence 111 1122221 222334443211 00000000 000 000000 111 12345
Q ss_pred ccCCCCC-----ccCCCCCC----hhHHHHHHHHHHhCCCeeeeecCChhH------------H----------HHHHHH
Q 002585 784 ENHDTGS-----TQGHWRFP----GGREMQGYAYILTHPGTPSVFYDHIFS------------H----------YRQEIE 832 (904)
Q Consensus 784 enHDt~R-----~~t~~~~~----~~~~klA~allltlPGiP~IYyGdE~~------------W----------l~~~~r 832 (904)
.|||... +.....++ -..++++++++|++||+|+||||+||+ | +..++|
T Consensus 1022 ~SHDevvhgk~sl~~km~Gd~~~k~a~lR~~~a~~~~~PGk~LlFMG~Efgq~~ew~~~~~LdW~ll~~~~h~~~~~~~r 1101 (1224)
T PRK14705 1022 ISHDEVVHGKGSMLRKMPGDRWQQLANLRAFLAYQWAHPGKQLIFMGTEFGQEAEWSEQHGLDWFLADIPAHRGIQLLTK 1101 (1224)
T ss_pred cccccccccchhHHHhCCCcHHHHHHHHHHHHHHHHhcCCcCEEECccccCCCCCccccccCCCcccCChhhHHHHHHHH
Confidence 6899742 11222222 135688999999999999999999974 4 888999
Q ss_pred HHHHHHHhCccccC-----CCeeEEee---CCCEEEEEE----CCEEEEEEeCCC
Q 002585 833 ALLSVRKRNKIHCR-----SRVEIVKA---ERDVYAAII----DEKVAMKLGPGH 875 (904)
Q Consensus 833 ~Li~lRk~~paL~~-----G~~~~l~~---~~~v~a~~r----~~~vlvvlnn~~ 875 (904)
.|++||+++|+|.. ..++++.. +++|++|.| ++.++||+|.+.
T Consensus 1102 dLn~ly~~~paL~~~d~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nftp 1156 (1224)
T PRK14705 1102 DLNELYTSTPALYQRDNEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINFSG 1156 (1224)
T ss_pred HHHHHHhcChhhhccCCCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcCCC
Confidence 99999999999953 34666643 457999998 235666666554
No 26
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-40 Score=385.06 Aligned_cols=338 Identities=20% Similarity=0.248 Sum_probs=215.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCC-CCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 002585 523 GRWYMELKEKATELSSLGFSVIWLPPPTES-VSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (904)
Q Consensus 523 GGdl~GI~ekLdYLk~LGVnaI~L~PIfes-~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~ 601 (904)
+|||+||+++||||++|||++|||+||+++ .++|||++.||+.|||+|||++||++||++||++||+||+|+|+||++.
T Consensus 25 ~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~s~ 104 (505)
T COG0366 25 GGDLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNHTSD 104 (505)
T ss_pred cccHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCcCCC
Confidence 499999999999999999999999999999 6999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCc----ccCC-CCCCCCCCC-----ccCCCCCCCCC-------CCCCCCCCCCCCCccCCCCHHHHHHHHHHH
Q 002585 602 HYQNQNGVW----NIFG-GRLNWDDRA-----VVADDPHFQGR-------GNKSSGDNFHAAPNIDHSQDFVRKDIKEWL 664 (904)
Q Consensus 602 ~~~~~~g~~----~~y~-g~~~W~~~~-----~~~~~~~f~~~-------~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l 664 (904)
+|.+..... ++.. ..+.|.... .......|.+. +.+..+.....+|+||+.||+||+++.+++
T Consensus 105 ~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~ 184 (505)
T COG0366 105 EHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNWENPEVREELLDVV 184 (505)
T ss_pred ccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceEEEecCCCCCCcCCCCHHHHHHHHHHH
Confidence 997421110 0111 113343211 00001122221 223334456889999999999999999999
Q ss_pred HHHHhccCccEEEecccccccc-----------chHHHHHHh---cCCC-EEEEeecCCCCccc------ccCCCCchHH
Q 002585 665 CWLRNEIGYDGWRLDFVRGFWG-----------GYVKDYLEA---TEPY-FAVGEYWDSLSYTY------GEMDHNQDAH 723 (904)
Q Consensus 665 ~~Wi~e~GIDGfRlD~a~~~~~-----------~f~~~~~~~---~~p~-~liGE~w~~~~~l~------g~mny~~~~~ 723 (904)
++|+ ++||||||+|++++++. .++..+.+. ..+. +..++.+....... ..+++..
T Consensus 185 ~~W~-~~gvDGfRlDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 260 (505)
T COG0366 185 KFWL-DKGVDGFRLDAAKHISKDFGLPPSEENLTFLEEIHEYLREENPDVLIYGEAITDVGEAPGAVKEDFADNTSF--- 260 (505)
T ss_pred HHHH-HcCCCeEEeccHhhhccccCCCCcccccccHHHHHHHHHHHHHHHHhcCcceeeeeccccccchhhhhccch---
Confidence 9999 69999999999999887 444444332 2222 12223332211100 0111000
Q ss_pred HHHHHHHHhhcCCCcccccchhhHHHHH---hhhchhhhhhhhhcCCCCCCcCCCCCcceeecccCCCCCccCCCCCCh-
Q 002585 724 RQRIIDWINAASGTAGAFDVTTKGILHS---ALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPG- 799 (904)
Q Consensus 724 ~~~i~~~l~~~~g~~~~fdf~l~~~l~~---~l~~~~~~~l~~~~~~~~~~~~~~P~~~vnflenHDt~R~~t~~~~~~- 799 (904)
... .+...|++.....-.. .............+.. .. .........|+.|||++|+.+.+..+.
T Consensus 261 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~hD~~r~~~~~~~~~~ 328 (505)
T COG0366 261 TNP---------ELSMLFDFSHVGLDFEALAPLDAEELKEILADWPL--AV-NLNDGWNNLFLSNHDQPRLLSRFGDDVG 328 (505)
T ss_pred hhh---------hHhhccccccccccccccCcccHHHHHHHHHHHHh--hh-ccccCchhhhhhhcCccceeeeccCCcc
Confidence 000 1112222222100000 0000000000000000 00 000012234799999999999876555
Q ss_pred ---hHHHHHHHHHHhCCCeeeeecCChhH------------------------------------------------H--
Q 002585 800 ---GREMQGYAYILTHPGTPSVFYDHIFS------------------------------------------------H-- 826 (904)
Q Consensus 800 ---~~~klA~allltlPGiP~IYyGdE~~------------------------------------------------W-- 826 (904)
...+++++++++++|+|+||||+|.+ |
T Consensus 329 ~~~~~~~~~~~~~~~~~g~p~iy~G~e~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~ 408 (505)
T COG0366 329 GRDASAKLLAALLFLLPGTPFIYYGDELGLTNFKDPPIKYYDDVELDSIILLSRDGCRTPMPWDENGLNAGFTGGKPWLS 408 (505)
T ss_pred chHHHHHHHHHHHHhCCCCcEEecccccCCCCCCCcchhhhchhhhhhhhhccccCCCCCcCCCCCCCCCCccCCCcCcc
Confidence 67888889999999999999998620 1
Q ss_pred ----------------------HHHHHHHHHHHHHhCc-cccCCCeeEEeeCC--CEEEEEE--CCEEEEEEeCCCC
Q 002585 827 ----------------------YRQEIEALLSVRKRNK-IHCRSRVEIVKAER--DVYAAII--DEKVAMKLGPGHY 876 (904)
Q Consensus 827 ----------------------l~~~~r~Li~lRk~~p-aL~~G~~~~l~~~~--~v~a~~r--~~~vlvvlnn~~~ 876 (904)
++.++++|+++|+.+. .+..|......... .++++.| .++.+++++|.+.
T Consensus 409 ~~~~~~~~~~~~~~~~d~~~~s~~~~~~~l~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 485 (505)
T COG0366 409 VNPNDLLGINVEAQLADELPESLFNFYRRLIALRKQHSALLANGEDFVLLADDDPSLLAFLRESGGETLLVVNNLSE 485 (505)
T ss_pred cChhhhhhhhHHHHhcccCcccHHHHHHHHHHHHHhhhhhhcCcccceecCCCCceEEEEecccCCceEEEEEcCCC
Confidence 7789999999999994 55667444443333 6888888 3344555555544
No 27
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=1.1e-38 Score=386.88 Aligned_cols=348 Identities=16% Similarity=0.218 Sum_probs=228.9
Q ss_pred CCCCCceeeeecccccCC----CCCCCHHHHHHH-------HHHHHHcCCCEEEeCCCcCCC------------------
Q 002585 503 GTGTGFEILCQGFNWESH----KSGRWYMELKEK-------ATELSSLGFSVIWLPPPTESV------------------ 553 (904)
Q Consensus 503 ~~~~~y~i~~~~F~Wd~~----~~GGdl~GI~ek-------LdYLk~LGVnaI~L~PIfes~------------------ 553 (904)
.+...||+++++|+.... ...|+|.+++++ |+||++||||+|+|||||++.
T Consensus 251 ~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~~ 330 (898)
T TIGR02103 251 ADMVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFSK 330 (898)
T ss_pred cccEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchhh
Confidence 456789999999974221 245899998875 777778899999999999763
Q ss_pred ----------------------------------------------CCCCCCcccCCCcCCCCCCH-------HHHHHHH
Q 002585 554 ----------------------------------------------SPEGYMPRDLYNLSSRYGNI-------DELKDVV 580 (904)
Q Consensus 554 ----------------------------------------------s~hGYd~~Dy~~IDp~lGt~-------edlk~LV 580 (904)
.||||+|..|+.++..|++. .|||+||
T Consensus 331 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk~mV 410 (898)
T TIGR02103 331 LCELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFREMV 410 (898)
T ss_pred hhccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHHHHH
Confidence 27999999999999999984 6999999
Q ss_pred HHHHHcCCEEEEEeecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHH
Q 002585 581 NKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDI 660 (904)
Q Consensus 581 ~aAH~~GIkVILD~V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i 660 (904)
++||++||+||||+|+|||+..++..... +....+|+... ....+.+ ....+..+++.++++||++|
T Consensus 411 ~alH~~Gi~VIlDVVyNHt~~~g~~~~s~---ld~~~P~YY~r-------~~~~G~~---~n~~~~~d~a~e~~~Vrk~i 477 (898)
T TIGR02103 411 QALNKTGLNVVMDVVYNHTNASGPNDRSV---LDKIVPGYYHR-------LNEDGGV---ENSTCCSNTATEHRMMAKLI 477 (898)
T ss_pred HHHHHCCCEEEEEeecccccccCccCccc---ccccCcHhhEe-------eCCCCCe---ecCCCCcCCCCCCHHHHHHH
Confidence 99999999999999999999876532221 21111111100 0011111 11233457899999999999
Q ss_pred HHHHHHHHhccCccEEEeccccccccchHHHHHHh---cCCC-EEEEeecCCCC------cccc--------cCCCCchH
Q 002585 661 KEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEA---TEPY-FAVGEYWDSLS------YTYG--------EMDHNQDA 722 (904)
Q Consensus 661 ~~~l~~Wi~e~GIDGfRlD~a~~~~~~f~~~~~~~---~~p~-~liGE~w~~~~------~l~g--------~mny~~~~ 722 (904)
++++++|+++|||||||||++++++.+|++++.++ ++|+ +++||.|+... +... .+.+..+.
T Consensus 478 iDsl~~W~~ey~VDGFRfDlm~~~~~~f~~~~~~~l~~i~pdi~l~GEgW~~~~~~~~~~~~~a~~~n~~~~~ig~FnD~ 557 (898)
T TIGR02103 478 VDSLVVWAKDYKVDGFRFDLMGHHPKAQMLAAREAIKALTPEIYFYGEGWDFGEVANNRRFINATQLNLAGTGIGTFSDR 557 (898)
T ss_pred HHHHHHHHHHcCCCEEEEechhhCCHHHHHHHHHHHHHhCCCEEEEecCCCcccccchhhhhhhhccccCCCCeEEeccc
Confidence 99999999999999999999999999999887654 5777 79999998421 1110 12334455
Q ss_pred HHHHHHHH--Hhh------cCCCcccc-cch----------------hhHHHHHhhhchh-hhhhhhhc-----C-----
Q 002585 723 HRQRIIDW--INA------ASGTAGAF-DVT----------------TKGILHSALDRCE-YWRLSDEK-----G----- 766 (904)
Q Consensus 723 ~~~~i~~~--l~~------~~g~~~~f-df~----------------l~~~l~~~l~~~~-~~~l~~~~-----~----- 766 (904)
+|++|+.- +.. ..|+.++. ..+ ....++..+.+.- .+.+.... +
T Consensus 558 ~RDavrGg~~f~~~~~~~~~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~~~~~~~g~~~~g~~~~y 637 (898)
T TIGR02103 558 LRDAVRGGGPFDSGDALRQNQGFGSGLAVQPNAHHGLDAASKDGALHLADLTRLGMAGNLKDFVLTDHEGKVVTGEELDY 637 (898)
T ss_pred hhhHhcCCCccccccccccCcceecCcccCCcccccccchhhhhhhhhHHHHHHhhcCcccccccccccccccccccccc
Confidence 66666531 111 01111110 000 0011222111110 00000000 0
Q ss_pred -CCCCCcCCCCCcceeecccCCCCCccCC----CC--CC----hhHHHHHHHHHHhCCCeeeeecCChh-----------
Q 002585 767 -KPPGVVGWWPSRAVTFIENHDTGSTQGH----WR--FP----GGREMQGYAYILTHPGTPSVFYDHIF----------- 824 (904)
Q Consensus 767 -~~~~~~~~~P~~~vnflenHDt~R~~t~----~~--~~----~~~~klA~allltlPGiP~IYyGdE~----------- 824 (904)
..+.-....|...|||++.||+..+-.. .. .. .++.++|.+++|+..|+|+|++|+||
T Consensus 638 ~g~~~~ya~~P~e~inYvs~HDN~TL~D~l~~~~~~~~~~~~r~r~~~la~a~~~lsQGipF~haG~E~lRSK~~~~nSY 717 (898)
T TIGR02103 638 NGAPAGYAADPTETINYVSKHDNQTLWDAISYKAAAETPSAERVRMQAVSLSTVMLGQGIPFFHAGSELLRSKSFDRDSY 717 (898)
T ss_pred CcCccccccCHHHheeeeeccCCccHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhChhhHHhcchHhhcCCCCCCCCC
Confidence 0000112357789999999999753221 11 01 24457999999999999999999995
Q ss_pred ---------H---------------------H---------------------HHHHHHHHHHHHHhCccccCCC-----
Q 002585 825 ---------S---------------------H---------------------YRQEIEALLSVRKRNKIHCRSR----- 848 (904)
Q Consensus 825 ---------~---------------------W---------------------l~~~~r~Li~lRk~~paL~~G~----- 848 (904)
+ | +.++|+.||+||+.+|+|+-++
T Consensus 718 ~sgD~~N~vdw~~~~~~~~~glp~~~~n~~~w~~~~~~~~~~~~~p~~~~~~~~~~~~~~Li~lRks~p~Frl~t~~~I~ 797 (898)
T TIGR02103 718 DSGDWFNRVDFSGQDNNWNVGLPRADKDGSNWPIIAPVLQDAAAKPDATDIKATTAFFLELLRIRSSSPLFRLDTAAEVM 797 (898)
T ss_pred cCchhhheecccccccccccCCCcccccccchhhhcccccccccccchhhHHHHHHHHHHHHHHHhCCcccCCCCHHHHH
Confidence 1 2 5899999999999999997543
Q ss_pred --eeEEeeC----CCEEEEEE
Q 002585 849 --VEIVKAE----RDVYAAII 863 (904)
Q Consensus 849 --~~~l~~~----~~v~a~~r 863 (904)
+.++... .+++++..
T Consensus 798 ~~v~F~~~g~~~~~g~i~~~i 818 (898)
T TIGR02103 798 KRVDFRNTGPDQIPGLIVMSI 818 (898)
T ss_pred hheEEeccCCcCCCCEEEEEE
Confidence 3344432 47888865
No 28
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=2e-37 Score=369.28 Aligned_cols=334 Identities=17% Similarity=0.210 Sum_probs=218.9
Q ss_pred CCCceeeeecccccCCCCCCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCC--CCCCCCcccCCCcCCCCCCHHHHHHHHH
Q 002585 505 GTGFEILCQGFNWESHKSGRWYMELK-EKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVN 581 (904)
Q Consensus 505 ~~~y~i~~~~F~Wd~~~~GGdl~GI~-ekLdYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edlk~LV~ 581 (904)
...|++++..|. ..+.-|++++++ ++|+|||+||||+||||||++++ .+|||++.|||+|+++|||++|||+||+
T Consensus 230 ~~IYE~Hvg~~~--~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd 307 (758)
T PLN02447 230 LRIYEAHVGMSS--EEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLID 307 (758)
T ss_pred CEEEEEeCCccc--CCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHH
Confidence 456788776543 222238999975 56999999999999999999987 5799999999999999999999999999
Q ss_pred HHHHcCCEEEEEeecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHH
Q 002585 582 KFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIK 661 (904)
Q Consensus 582 aAH~~GIkVILD~V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~ 661 (904)
+||++||+||||+|+||++.++.. |. ..|++.. ..+|..... .+....+...+|+.+++||++|+
T Consensus 308 ~aH~~GI~VilDvV~nH~~~~~~~--gl-~~fDg~~----------~~Yf~~~~~--g~~~~w~~~~~N~~~~eVr~fLl 372 (758)
T PLN02447 308 KAHSLGLRVLMDVVHSHASKNTLD--GL-NGFDGTD----------GSYFHSGPR--GYHWLWDSRLFNYGNWEVLRFLL 372 (758)
T ss_pred HHHHCCCEEEEEeccccccccccc--cc-cccCCCC----------ccccccCCC--CCcCcCCCceecCCCHHHHHHHH
Confidence 999999999999999999976531 11 1222210 011111100 00111233469999999999999
Q ss_pred HHHHHHHhccCccEEEeccccccc-------cc-------------------hHHH---HHHhcCCC-EEEEeecCCCCc
Q 002585 662 EWLCWLRNEIGYDGWRLDFVRGFW-------GG-------------------YVKD---YLEATEPY-FAVGEYWDSLSY 711 (904)
Q Consensus 662 ~~l~~Wi~e~GIDGfRlD~a~~~~-------~~-------------------f~~~---~~~~~~p~-~liGE~w~~~~~ 711 (904)
+++++|+++|||||||||++..|- .+ |++. .+.+..|. ++|||.+.+.+.
T Consensus 373 ~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~ 452 (758)
T PLN02447 373 SNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPT 452 (758)
T ss_pred HHHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Confidence 999999999999999999997552 11 3433 23445677 899998876332
Q ss_pred ccccCCCCchHHHHHHHHHHhhcCCCcccccchhh----HHHHHhhhch--hhhhhhhhcCCCCCCc-CCCCCcceeecc
Q 002585 712 TYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTK----GILHSALDRC--EYWRLSDEKGKPPGVV-GWWPSRAVTFIE 784 (904)
Q Consensus 712 l~g~mny~~~~~~~~i~~~l~~~~g~~~~fdf~l~----~~l~~~l~~~--~~~~l~~~~~~~~~~~-~~~P~~~vnfle 784 (904)
+..- .. .+| ..||+.+. ..+.+.+... ..+.+..... ++. .+|..+.|.|.+
T Consensus 453 l~~p---------------~~-~GG--lGFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~~---sl~~r~~~E~~I~y~e 511 (758)
T PLN02447 453 LCRP---------------VQ-EGG--VGFDYRLAMAIPDKWIELLKEKRDEDWSMGDIVH---TLTNRRYTEKCVAYAE 511 (758)
T ss_pred cccc---------------CC-CCc--CCcceEECCccchHHHHHHhhCCCcccCHHHHHH---HHhcccccCceEeccC
Confidence 1100 00 001 02222221 1111111110 0111111100 111 245678899999
Q ss_pred cCCCCCcc--C------------CCCCCh----------hHHHHHHHHHHhCCCe-eeeecCChhH--------------
Q 002585 785 NHDTGSTQ--G------------HWRFPG----------GREMQGYAYILTHPGT-PSVFYDHIFS-------------- 825 (904)
Q Consensus 785 nHDt~R~~--t------------~~~~~~----------~~~klA~allltlPGi-P~IYyGdE~~-------------- 825 (904)
|||+...- + .+.+.. ...|++.+++|++||. +++|||.||+
T Consensus 512 SHDevv~Gkksl~~~l~d~~my~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr~~n~w 591 (758)
T PLN02447 512 SHDQALVGDKTIAFWLMDKEMYDGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPREGNGW 591 (758)
T ss_pred CcCeeecCcchhHhhhcchhhhhcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCchhccCccccccc
Confidence 99996541 1 111100 1136677889999999 7999999863
Q ss_pred --------H------------HHHHHHHHHHHHHhCccccCCCeeEEe--eCCCEEEEEECCEEEEEEeCCCCC
Q 002585 826 --------H------------YRQEIEALLSVRKRNKIHCRSRVEIVK--AERDVYAAIIDEKVAMKLGPGHYE 877 (904)
Q Consensus 826 --------W------------l~~~~r~Li~lRk~~paL~~G~~~~l~--~~~~v~a~~r~~~vlvvlnn~~~~ 877 (904)
| |.+|+|.|++|++++|+|..|..-+.. .++.|++|.|++ +++|+|.....
T Consensus 592 s~~~~~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~~~i~~~d~~~~Viaf~R~~-ll~V~NF~p~~ 664 (758)
T PLN02447 592 SYDKCRRRWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSEHQYVSRKDEGDKVIVFERGD-LVFVFNFHPTN 664 (758)
T ss_pred CcccccCCccccCCCchhhhHHHHHHHHHHHHHhcCccccCCCceeeeecCCCCEEEEEeCC-eEEEEeCCCCC
Confidence 3 777999999999999999866433322 345899999974 67777766433
No 29
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-37 Score=363.20 Aligned_cols=374 Identities=24% Similarity=0.326 Sum_probs=252.6
Q ss_pred CCCCCCCceeeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCC-CCCCCCcccCCCcCCCCCCHHHHHHH
Q 002585 501 SPGTGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDV 579 (904)
Q Consensus 501 ~~~~~~~y~i~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~-s~hGYd~~Dy~~IDp~lGt~edlk~L 579 (904)
|......|+++.+.|.|+....-||++||++||||||+|||++|||+||+++. .+|||++.||+.|+|+|||++||++|
T Consensus 14 ~W~~~~~YQI~~~sF~~s~~d~~G~~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~L 93 (545)
T KOG0471|consen 14 WWKTESIYQIYPDSFADSDGDGVGDLKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKEL 93 (545)
T ss_pred hhhcCceeEEeccccccccCCCccccccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHH
Confidence 44566778888888887766656999999999999999999999999999999 56999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEeecccccccCCCCCCCcc-c--CCCCCCCCCCC-----------------ccCCCCCCCCCCCCCC
Q 002585 580 VNKFHDVGMKILGDVVLNHRCAHYQNQNGVWN-I--FGGRLNWDDRA-----------------VVADDPHFQGRGNKSS 639 (904)
Q Consensus 580 V~aAH~~GIkVILD~V~NHt~~~~~~~~g~~~-~--y~g~~~W~~~~-----------------~~~~~~~f~~~~~~~~ 639 (904)
|+++|++||+||+|+|+||++..|+|...... . |...+.|++.. .....+...+...++.
T Consensus 94 i~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l 173 (545)
T KOG0471|consen 94 ILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYL 173 (545)
T ss_pred HHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccceec
Confidence 99999999999999999999988876332211 1 11113333221 1111112222345566
Q ss_pred CCCCCCCCccCCCCHHHHHHHHHHHH-HHHhccCccEEEeccccccccchHHHHHHhcCCCEEEEeecCCCCccc-ccCC
Q 002585 640 GDNFHAAPNIDHSQDFVRKDIKEWLC-WLRNEIGYDGWRLDFVRGFWGGYVKDYLEATEPYFAVGEYWDSLSYTY-GEMD 717 (904)
Q Consensus 640 ~~~~~~lpdlN~~np~Vr~~i~~~l~-~Wi~e~GIDGfRlD~a~~~~~~f~~~~~~~~~p~~liGE~w~~~~~l~-g~mn 717 (904)
+.....+||||++||.|++.|.++++ +|. ++|+||||+|+++++..+++. ..-...|.+-.||.|.+..+.. ..++
T Consensus 174 ~~~~~~~pDln~~n~~V~~~~~~~l~~~~~-~~gvdGfRiD~v~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~ 251 (545)
T KOG0471|consen 174 GQFAVLQPDLNYENPDVRKAIKEWLRDFWL-EKGVDGFRIDAVKGYAGENFK-NMWPDEPVFDVGEKLQDDNYVAYQYND 251 (545)
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEccccccccccc-ccccCCCcccceeEecCcchhhccccc
Confidence 66778999999999999999999999 777 999999999999999888766 3334456688999998764422 2334
Q ss_pred CCchHHH--HHHHHHHhhcCCCcccccchhhHHHHHhhhch--hhhhhhhhcCCCC------------------------
Q 002585 718 HNQDAHR--QRIIDWINAASGTAGAFDVTTKGILHSALDRC--EYWRLSDEKGKPP------------------------ 769 (904)
Q Consensus 718 y~~~~~~--~~i~~~l~~~~g~~~~fdf~l~~~l~~~l~~~--~~~~l~~~~~~~~------------------------ 769 (904)
|..+... ..+..+..........+.+.-...+....... ..+++...-....
T Consensus 252 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lt~~~~~~~~~~~~ 331 (545)
T KOG0471|consen 252 YGEDQPEIHDLIRAERFLLDDYSAAFGFGDKRILQTEAYSSLEQLLRLLENSSKPRGSDLPFNFDTLSDLGLTVASIYKE 331 (545)
T ss_pred ccccchhhhhHHHHHHhhhhhhhhcccccchhhhhhhhhccHHHHHhhhccCCCCccccccchhhhhhhhhccchHHHHH
Confidence 4333211 11111111111122223222111111110000 0111100000000
Q ss_pred ---CCcCCCC---CcceeecccCCCCCccCCCCCChhHHHHHHHHHHhCCCeeeeecCChhH------------------
Q 002585 770 ---GVVGWWP---SRAVTFIENHDTGSTQGHWRFPGGREMQGYAYILTHPGTPSVFYDHIFS------------------ 825 (904)
Q Consensus 770 ---~~~~~~P---~~~vnflenHDt~R~~t~~~~~~~~~klA~allltlPGiP~IYyGdE~~------------------ 825 (904)
..+...+ ..+...++|||..|..++++ ....++..++++|+||+|++|||+|++
T Consensus 332 ~~~~~~~~~~~~~~~a~W~~~~~~~~r~~sr~~--~~~~~~~~~l~~tlpG~~~~y~g~e~g~~~~~~~~~~~~~~~~~~ 409 (545)
T KOG0471|consen 332 VEVDWLSNHDTENRWAHWVLGNHDQARLASRFG--SDSVDLLNVLLLTLPGTPVTYYGEEIGMDDVAISGEDGEDPKLMQ 409 (545)
T ss_pred HHHHHHhcCCccCCceeeeecCccchhhHHHhc--chhHHHHhHHhcccCCCceEEEeEEeeccceeeccCCCcCcHHhc
Confidence 0000011 12445688888888888776 344788889999999999999999841
Q ss_pred ------H------------------------------------HHHHHHHHHHHHHhCccccCCCeeEEeeCCCEEEEEE
Q 002585 826 ------H------------------------------------YRQEIEALLSVRKRNKIHCRSRVEIVKAERDVYAAII 863 (904)
Q Consensus 826 ------W------------------------------------l~~~~r~Li~lRk~~paL~~G~~~~l~~~~~v~a~~r 863 (904)
| +...++++..+|+....+..|.......+++++++.|
T Consensus 410 ~rt~~~w~~~~~~gfs~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~lr~~~~~~~~g~~~~~~~~~~if~~~r 489 (545)
T KOG0471|consen 410 SRTPMQWDESTNAGFSEASKTWLPVNADYTVINVKMQSGDPQSTLKLFKRLLDLRKSERSYLHGSFVLFAATPGLFSFSR 489 (545)
T ss_pred cCCccccccccccCCCCccCcceeccccchhheeeccccCCccHHHHHHHHHHHhhhcccccccceeeecCCCceEEEEe
Confidence 2 7889999999999988788888888888889999988
Q ss_pred ---CCEEEEEEeCCCCCC
Q 002585 864 ---DEKVAMKLGPGHYEP 878 (904)
Q Consensus 864 ---~~~vlvvlnn~~~~~ 878 (904)
+...+++++|....+
T Consensus 490 ~~~~~~~~~~~~~~~~~~ 507 (545)
T KOG0471|consen 490 NWDGNERFIAVLNFGDSP 507 (545)
T ss_pred ccCCCceEEEEEecCCcc
Confidence 344445455444333
No 30
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=1.4e-36 Score=367.29 Aligned_cols=347 Identities=16% Similarity=0.191 Sum_probs=224.3
Q ss_pred CCCCCceeeeecccccCC----CCCCCHHHHHHH-------HHHHHHcCCCEEEeCCCcCCC------------------
Q 002585 503 GTGTGFEILCQGFNWESH----KSGRWYMELKEK-------ATELSSLGFSVIWLPPPTESV------------------ 553 (904)
Q Consensus 503 ~~~~~y~i~~~~F~Wd~~----~~GGdl~GI~ek-------LdYLk~LGVnaI~L~PIfes~------------------ 553 (904)
.+...||+++++|.-... .+.|+|.|++++ |+|||+||||+|+|||+|++.
T Consensus 338 ~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~ 417 (970)
T PLN02877 338 SDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELE 417 (970)
T ss_pred cccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhc
Confidence 466789999999985321 245899888776 777777799999999999852
Q ss_pred ---------------------CCCCCCcccCCCcCCCCCCH-------HHHHHHHHHHHHcCCEEEEEeecccccccCCC
Q 002585 554 ---------------------SPEGYMPRDLYNLSSRYGNI-------DELKDVVNKFHDVGMKILGDVVLNHRCAHYQN 605 (904)
Q Consensus 554 ---------------------s~hGYd~~Dy~~IDp~lGt~-------edlk~LV~aAH~~GIkVILD~V~NHt~~~~~~ 605 (904)
.||||+|..|+.++.+|++. .|||+||++||++||+||||+|+||++..+++
T Consensus 418 ~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~ 497 (970)
T PLN02877 418 KLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPF 497 (970)
T ss_pred cccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCc
Confidence 67999999999999999982 58999999999999999999999999875542
Q ss_pred CCCCcccCCCCC-CCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEecccccc
Q 002585 606 QNGVWNIFGGRL-NWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF 684 (904)
Q Consensus 606 ~~g~~~~y~g~~-~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~ 684 (904)
... +.++... .|+... +..+.+. +..+..+.+.++++||++|+++++||+++|||||||||++.++
T Consensus 498 ~~~--s~ld~~vP~YY~r~--------~~~G~~~---ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i 564 (970)
T PLN02877 498 DEN--SVLDKIVPGYYLRR--------NSDGFIE---NSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHL 564 (970)
T ss_pred chh--hcccCCCCCceEEE--------CCCCCcc---cCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccc
Confidence 110 1121111 111100 1111111 1123446788999999999999999999999999999999999
Q ss_pred ccchHHHH---HHhcC--------CC-EEEEeecCCCCc---------ccc-----cCCCCchHHHHHHHH---HHh-hc
Q 002585 685 WGGYVKDY---LEATE--------PY-FAVGEYWDSLSY---------TYG-----EMDHNQDAHRQRIID---WIN-AA 734 (904)
Q Consensus 685 ~~~f~~~~---~~~~~--------p~-~liGE~w~~~~~---------l~g-----~mny~~~~~~~~i~~---~l~-~~ 734 (904)
+.+.+.++ +++++ |. +++||.|+...- .+. .+.+..|.+|++|+. |-. ..
T Consensus 565 ~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~~g~~~~~~~~~~A~q~n~~g~gIg~FnD~~RDavkGg~~F~~~~~ 644 (970)
T PLN02877 565 MKRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWDFGEVAKNGRGVNASQFNLAGTGIGSFNDRIRDAMLGGSPFGHPLQ 644 (970)
T ss_pred cHHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCCCCCcccccccccccccccCCCceEEecchhHHHHcCCCCCCCcCC
Confidence 98866554 34442 44 799999974210 010 133444556776663 200 01
Q ss_pred CCCcccccc-----------h-------hhHHHHHhhhchhhh--hhhhhcC-----C----CCC---CcCCCCCcceee
Q 002585 735 SGTAGAFDV-----------T-------TKGILHSALDRCEYW--RLSDEKG-----K----PPG---VVGWWPSRAVTF 782 (904)
Q Consensus 735 ~g~~~~fdf-----------~-------l~~~l~~~l~~~~~~--~l~~~~~-----~----~~~---~~~~~P~~~vnf 782 (904)
.|+.+..-. . +...++..+.+ +.. .+.+..+ . ..+ -....|.+.|||
T Consensus 645 qGf~~G~~~~pn~~~~~~~~~~~~~~~~~~d~i~~glaG-nl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InY 723 (970)
T PLN02877 645 QGFVTGLFLQPNGHDQGGEDVQELMLATAKDHIQVGMAG-NLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINY 723 (970)
T ss_pred CceecccccCCcccccccchhhhhhhhhhHHHHHHHhcc-chhccccccccccccccccccccCCcccccccCHHHheee
Confidence 122211000 0 01122222211 111 0110000 0 000 112357789999
Q ss_pred cccCCCCCccCCC----CC------ChhHHHHHHHHHHhCCCeeeeecCChh--------------------HH------
Q 002585 783 IENHDTGSTQGHW----RF------PGGREMQGYAYILTHPGTPSVFYDHIF--------------------SH------ 826 (904)
Q Consensus 783 lenHDt~R~~t~~----~~------~~~~~klA~allltlPGiP~IYyGdE~--------------------~W------ 826 (904)
++.||+..+...+ .. ..++.++|++++|+..|+|+|++|+|| +|
T Consensus 724 vs~HDN~TL~D~l~~~~~~~~s~~~r~r~~~la~aiv~lsQGipF~haG~E~lRSK~~d~nSYnSgD~~N~lDw~~~~nn 803 (970)
T PLN02877 724 VSAHDNETLFDIISLKTPMEISVDERCRINHLATSIIALSQGIPFFHAGDEILRSKSLDRDSYNSGDWFNRLDFSYDSNN 803 (970)
T ss_pred eeccCCchHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhChhhHHhcchhhhcCCCCCCCCCcCchhhheeccccccCc
Confidence 9999997532211 10 124568999999999999999999996 12
Q ss_pred ------------------------------------HHHHHHHHHHHHHhCccccCCC-------eeEEeeC----CCEE
Q 002585 827 ------------------------------------YRQEIEALLSVRKRNKIHCRSR-------VEIVKAE----RDVY 859 (904)
Q Consensus 827 ------------------------------------l~~~~r~Li~lRk~~paL~~G~-------~~~l~~~----~~v~ 859 (904)
..++|+.||+||+.+|+|+-++ +.++... .+++
T Consensus 804 ~~~GlP~~~~~~~~w~~~~~~l~~~~~~p~~~~i~~~~~~~~~Li~lRks~plFrl~t~~~I~~~v~F~~~g~~~~~gvi 883 (970)
T PLN02877 804 WGVGLPPKEKNEDNWPLIKPRLADPSFKPSKEHILAALDNFLDLLRIRYSSPLFRLRTANAIQERVRFHNTGPSSIPGVI 883 (970)
T ss_pred cccCCChhHhcchhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHhhcEEeccCCCcCCCEE
Confidence 3788999999999999997554 3344432 3788
Q ss_pred EEEE
Q 002585 860 AAII 863 (904)
Q Consensus 860 a~~r 863 (904)
++..
T Consensus 884 ~~~i 887 (970)
T PLN02877 884 VMSI 887 (970)
T ss_pred EEEE
Confidence 8865
No 31
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=7.1e-36 Score=343.82 Aligned_cols=351 Identities=13% Similarity=0.050 Sum_probs=253.8
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCC---------C-CCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTES---------V-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes---------~-s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt 599 (904)
....+||++|||++|||+|++++ + .++|||+.| +.|||.|||++||++||++||++||+||+|+|+|||
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d-~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHT 155 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRIS-FDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHT 155 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCccc-CccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 45679999999999999999999 5 479999999 599999999999999999999999999999999999
Q ss_pred cccCCC---CCCCcccCCCCC-----------CCCCCCcc---------------------CCC--CCCCCCC-------
Q 002585 600 CAHYQN---QNGVWNIFGGRL-----------NWDDRAVV---------------------ADD--PHFQGRG------- 635 (904)
Q Consensus 600 ~~~~~~---~~g~~~~y~g~~-----------~W~~~~~~---------------------~~~--~~f~~~~------- 635 (904)
|..|+- ..+ +.+|.+.| -|.+.... +.. .-|..++
T Consensus 156 s~ghdF~lAr~~-~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt 234 (688)
T TIGR02455 156 GKGADFRLAELA-HGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWS 234 (688)
T ss_pred CCCcchHHHhhc-CCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCCce
Confidence 999872 122 45555533 23221111 100 1121111
Q ss_pred --------------CCCCCCCCCCCCccCCCCHH--HHHHHH-HHHHHHHhccCccEEEeccccccc-------------
Q 002585 636 --------------NKSSGDNFHAAPNIDHSQDF--VRKDIK-EWLCWLRNEIGYDGWRLDFVRGFW------------- 685 (904)
Q Consensus 636 --------------~~~~~~~~~~lpdlN~~np~--Vr~~i~-~~l~~Wi~e~GIDGfRlD~a~~~~------------- 685 (904)
++....++..+|+||+.||. ||+.|+ +++++|+ +.|+||||+|++..+-
T Consensus 235 ~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~-~lG~~GfRLDAvpfLg~e~~~~~~~~~e~ 313 (688)
T TIGR02455 235 ATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAID-CLGARGLRLDANGFLGVERRAEGTAWSEG 313 (688)
T ss_pred ecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHH-HhccccceeccccceeeecCCCCCCCCcc
Confidence 12222356899999999999 999999 8999999 9999999999975321
Q ss_pred cchHH---HHHH--hcCCC-EEEEeecCCCCcccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhh
Q 002585 686 GGYVK---DYLE--ATEPY-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYW 759 (904)
Q Consensus 686 ~~f~~---~~~~--~~~p~-~liGE~w~~~~~l~g~mny~~~~~~~~i~~~l~~~~g~~~~fdf~l~~~l~~~l~~~~~~ 759 (904)
..+.+ +++. ..++. ++++|.--. .+.+..|+.+ +.+..|||.+...+..++..++..
T Consensus 314 h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~---------------~~d~~~~~g~--~~dl~~dF~t~p~~~~AL~tgda~ 376 (688)
T TIGR02455 314 HPLSLTGNQLIAGAIRKAGGFSFQELNLT---------------IDDIAAMSHG--GADLSYDFITRPAYHHALLTGDTE 376 (688)
T ss_pred CHHHHHHHHHHHHhhhcCCeeEeeeccCC---------------HHHHHHHhCC--CcceeecccccHHHHHHHHcCCHH
Confidence 12433 3333 22455 899886321 4567888873 789999999988888888877655
Q ss_pred hhhhhcCCCCCCcCCCCCcceeecccCCCC--------------------------------------C-----------
Q 002585 760 RLSDEKGKPPGVVGWWPSRAVTFIENHDTG--------------------------------------S----------- 790 (904)
Q Consensus 760 ~l~~~~~~~~~~~~~~P~~~vnflenHDt~--------------------------------------R----------- 790 (904)
-++..+...... ..-+.+.++||.|||.- |
T Consensus 377 pLr~~L~~~~~~-gid~~~~~~~LrNHDELtlelvh~~~~~~~~~~~~~g~~~~g~~l~e~~R~~m~~~~a~d~~p~~m~ 455 (688)
T TIGR02455 377 FLRLMLKEMHAF-GIDPASLIHALQNHDELTLELVHFWTLHAHDHYHYKGQTLPGGHLREHIREEIYERLSGEHAPYNLK 455 (688)
T ss_pred HHHHHHHhhhcC-CCCchhhhhhccCccccchhhhhhcccccccccccccccCCccccCHHHHHHHHHHhcCCCccccce
Confidence 444433211111 11234678999999981 0
Q ss_pred cc----------------------CCCCCChhHHHHHHHHHHh----CCCeeeeecC--------------ChhH-----
Q 002585 791 TQ----------------------GHWRFPGGREMQGYAYILT----HPGTPSVFYD--------------HIFS----- 825 (904)
Q Consensus 791 ~~----------------------t~~~~~~~~~klA~alllt----lPGiP~IYyG--------------dE~~----- 825 (904)
+. .+..++.++++++.+++++ +||+|+|||| +|++
T Consensus 456 ~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~LL~s~na~lPG~p~L~ygdl~GalpL~~~~v~deigmGD~~ 535 (688)
T TIGR02455 456 FVTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHILLVMFNAMQPGVFALSGWDLVGALPLAAEAVAELMGDGDTR 535 (688)
T ss_pred EEeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHHHHHhhccCCCceEeecccccccccccccchhhhhccCccc
Confidence 00 0112245678999999999 9999999999 6642
Q ss_pred H-----------------------------------------HHHHHHHHHHHHHhCccccCCCeeEEeeCC-CEEEEEE
Q 002585 826 H-----------------------------------------YRQEIEALLSVRKRNKIHCRSRVEIVKAER-DVYAAII 863 (904)
Q Consensus 826 W-----------------------------------------l~~~~r~Li~lRk~~paL~~G~~~~l~~~~-~v~a~~r 863 (904)
| +...+++++++|++++++..|.+.++...+ .++++.+
T Consensus 536 wl~rggfs~~~~~p~~~~s~~~lP~~~~~Ygnv~~Ql~dp~S~l~~l~~il~vR~~~~i~~~~~~~~~~~~~~gvLa~v~ 615 (688)
T TIGR02455 536 WIHRGGYDLADLAPEAEASAEGLPKARALYGSLAEQLDEPDSFACKLKKILAVRQAYDIAASKQILIPDVQAPGLLVMVH 615 (688)
T ss_pred cccCCCcccCCCCchhhhccCCCCCCcCCCCCHHHHhhCCccHHHHHHHHHHHHHhCCcccCceeeecCCCCCcEEEEEE
Confidence 2 899999999999999999999999888765 7888866
Q ss_pred ----CCEEEEEEeCCCCCCC--------------------------CCCCCeEEEEcCCCeEEeccCC
Q 002585 864 ----DEKVAMKLGPGHYEPP--------------------------SGSQNWSFVTEGRDYKSNLANT 901 (904)
Q Consensus 864 ----~~~vlvvlnn~~~~~~--------------------------~g~~~~~~~~~g~~y~vw~~~~ 901 (904)
++..+++++|.+.++. .+.+.+++.+++++|..++.+.
T Consensus 616 ~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~~~~~~~dl~~~~~~~~~~~~~~~~i~L~~y~~~wl~~~~ 683 (688)
T TIGR02455 616 ELPAGKGIQITALNFGADAIAEEICLPGFAPGPVVDIIHESVEGDLTDDCELMINLDPYEALALRIVN 683 (688)
T ss_pred EcCCCCceEEEeeccCCCCeeeEEeccccCCCCceeccCCCccCCcCCCceeEEEecCcceEEEEecc
Confidence 2255555666554331 1345699999999999998764
No 32
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.2e-36 Score=353.24 Aligned_cols=321 Identities=22% Similarity=0.320 Sum_probs=212.1
Q ss_pred CCCCCCCCCCceeeeecccccCCC----CCCCHHHHHHH--HHHHHHcCCCEEEeCCCcCCC-----------CCCCCCc
Q 002585 498 AKISPGTGTGFEILCQGFNWESHK----SGRWYMELKEK--ATELSSLGFSVIWLPPPTESV-----------SPEGYMP 560 (904)
Q Consensus 498 ~r~~~~~~~~y~i~~~~F~Wd~~~----~GGdl~GI~ek--LdYLk~LGVnaI~L~PIfes~-----------s~hGYd~ 560 (904)
.+....+...||+++++|+--.++ ..|+|.|+++. |+|||+||||+|+||||+... .||||+|
T Consensus 165 ~~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP 244 (697)
T COG1523 165 PRIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDP 244 (697)
T ss_pred CCCCccceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCc
Confidence 334467788999999999842221 34999999999 999999999999999999865 6899999
Q ss_pred ccCCCcCCCCCCH-------HHHHHHHHHHHHcCCEEEEEeecccccccCCCCCCCcccCCCC-CCCCCCCccCCCCCCC
Q 002585 561 RDLYNLSSRYGNI-------DELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGR-LNWDDRAVVADDPHFQ 632 (904)
Q Consensus 561 ~Dy~~IDp~lGt~-------edlk~LV~aAH~~GIkVILD~V~NHt~~~~~~~~g~~~~y~g~-~~W~~~~~~~~~~~f~ 632 (904)
..||+++++|.+. .|||.||+++|++||.||||+|||||+... ..|.-.+|.+- ...+.+ . +
T Consensus 245 ~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~--~~g~t~~f~~id~~~Yyr-~-------~ 314 (697)
T COG1523 245 LNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGN--ELGPTLSFRGIDPNYYYR-L-------D 314 (697)
T ss_pred ccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCccccc--CcCcccccccCCcCceEE-E-------C
Confidence 9999999999763 499999999999999999999999998532 12333333331 010100 0 0
Q ss_pred CCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEeccccccccchH-----HHHHHhc--CC----CEE
Q 002585 633 GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYV-----KDYLEAT--EP----YFA 701 (904)
Q Consensus 633 ~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~~f~-----~~~~~~~--~p----~~l 701 (904)
..+.+. ....+...+|.++|.||++|+|+++||+++|+|||||||.|..+..+-. ..++.+. .| .-+
T Consensus 315 ~dg~~~--N~TGcGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~~~~~~l~~~~~~~p~l~~~kl 392 (697)
T COG1523 315 PDGYYS--NGTGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLFDINANLFLAGEGDPVLSGVKL 392 (697)
T ss_pred CCCCee--cCCccCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccccccCcchhhhccCCccccCcee
Confidence 111111 0112334699999999999999999999999999999999976554432 1222222 22 238
Q ss_pred EEeecCCC--CcccccCC--CC----chHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcC
Q 002585 702 VGEYWDSL--SYTYGEMD--HN----QDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVG 773 (904)
Q Consensus 702 iGE~w~~~--~~l~g~mn--y~----~~~~~~~i~~~l~~~~g~~~~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~ 773 (904)
+||.|+-. .|..|... +. .+.+++.+++|+.+..+. ...+...+.+.. ++.. ...
T Consensus 393 iAepwD~g~~gyqvG~Fpd~~~~aewng~~rD~vr~F~~G~~~~--------~~~~a~rl~gS~--d~~~-------~~~ 455 (697)
T COG1523 393 IAEPWDIGPGGYQVGNFPDSPRWAEWNGRFRDDVRRFWRGDAGL--------VGEFAKRLAGSS--DLYK-------RNG 455 (697)
T ss_pred eecchhhcCCCcccccCCCccchhhhCCcccccccceeeCCCcc--------HHHHHHHhhcCc--chhh-------ccC
Confidence 99999754 34333322 10 112344444444432221 112222221111 1111 123
Q ss_pred CCCCcceeecccCCCCCccCC------------------------CC-------C------Ch-hHHHHHHHHHHhCCCe
Q 002585 774 WWPSRAVTFIENHDTGSTQGH------------------------WR-------F------PG-GREMQGYAYILTHPGT 815 (904)
Q Consensus 774 ~~P~~~vnflenHDt~R~~t~------------------------~~-------~------~~-~~~klA~allltlPGi 815 (904)
+-|.+.|||+..||.-.+... ++ + .+ ...+...+.+|+..|+
T Consensus 456 ~~p~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG~ 535 (697)
T COG1523 456 RRPSQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQGT 535 (697)
T ss_pred CCccceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 458899999999999321110 00 0 11 2234455566677899
Q ss_pred eeeecCChh--------------------HH-------HHHHHHHHHHHHHhCccccCC
Q 002585 816 PSVFYDHIF--------------------SH-------YRQEIEALLSVRKRNKIHCRS 847 (904)
Q Consensus 816 P~IYyGdE~--------------------~W-------l~~~~r~Li~lRk~~paL~~G 847 (904)
||+-.|||+ +| +++|.+.||+|||++|+|+..
T Consensus 536 pml~~gDe~~rtq~gnnNsYcqdn~inwlDW~~~~~~~l~~f~~~lIaLRk~~~af~~~ 594 (697)
T COG1523 536 PMLLAGDEFGRTQYGNNNAYCQDNEINWLDWSTEANNDLVEFTKGLIALRKAHPAFRRR 594 (697)
T ss_pred cccccccccccccccccccccCCcccceeccCccccHHHHHHHHHHHHHhhhcchhccc
Confidence 999999995 35 899999999999999999873
No 33
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=100.00 E-value=8.1e-34 Score=339.64 Aligned_cols=186 Identities=23% Similarity=0.302 Sum_probs=147.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCCC--CCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 002585 523 GRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (904)
Q Consensus 523 GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~ 600 (904)
||+|.+++++|+||++|||++|||+|||++. ++|||++.||+.|||.|||+++|++||++||++||+||+|+|+||++
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 7899999999999999999999999999974 78999999999999999999999999999999999999999999999
Q ss_pred cc---CCC-----CCCCcccCCCC--CCCCCCCc------c-CCC------------------C-----CCC--------
Q 002585 601 AH---YQN-----QNGVWNIFGGR--LNWDDRAV------V-ADD------------------P-----HFQ-------- 632 (904)
Q Consensus 601 ~~---~~~-----~~g~~~~y~g~--~~W~~~~~------~-~~~------------------~-----~f~-------- 632 (904)
.+ +++ .+|.-++|.+. .+|.+... + .+. . +|+
T Consensus 92 ~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p~ 171 (825)
T TIGR02401 92 VHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAPG 171 (825)
T ss_pred cccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCcc
Confidence 87 332 34555555443 34542100 0 000 0 000
Q ss_pred ------------------------------------CCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEE
Q 002585 633 ------------------------------------GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 676 (904)
Q Consensus 633 ------------------------------------~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGf 676 (904)
+.-||..+.+..+|+.++.++|+|.++...++..|+++.-|||+
T Consensus 172 ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdGl 251 (825)
T TIGR02401 172 TLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDGL 251 (825)
T ss_pred chhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCceE
Confidence 01123334456789999999999999999999999966669999
Q ss_pred Eecccccc--ccchHHHHHHhcCCC-EEEEe-ecCC
Q 002585 677 RLDFVRGF--WGGYVKDYLEATEPY-FAVGE-YWDS 708 (904)
Q Consensus 677 RlD~a~~~--~~~f~~~~~~~~~p~-~liGE-~w~~ 708 (904)
|||.++++ |..+++++.++.++. +++.| ++..
T Consensus 252 RIDh~dGL~dP~~Yl~rLr~~~~~~~yivvEKIl~~ 287 (825)
T TIGR02401 252 RIDHIDGLADPEGYLRRLRELVGPARYLVVEKILAP 287 (825)
T ss_pred EeccccccCChHHHHHHHHHhcCCCceEEEEEeccC
Confidence 99999999 777999988888774 78888 5554
No 34
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-34 Score=334.29 Aligned_cols=339 Identities=19% Similarity=0.184 Sum_probs=214.4
Q ss_pred CCCCceeeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCC--CCCCCCcccCCCcCCCCCCHHHHHHHHH
Q 002585 504 TGTGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVN 581 (904)
Q Consensus 504 ~~~~y~i~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edlk~LV~ 581 (904)
..+.||+++-.|+++ ..-|+++.++++|+|||+||||+|.||||.+.+ .+|||+++-||++..+|||++|||+||+
T Consensus 144 ~~vIYElHvGs~~~~--~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD 221 (628)
T COG0296 144 PIVIYELHVGSFTPD--RFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVD 221 (628)
T ss_pred CceEEEEEeeeccCC--CCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHH
Confidence 556799999999863 446899999999999999999999999999998 6799999999999999999999999999
Q ss_pred HHHHcCCEEEEEeecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHH
Q 002585 582 KFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIK 661 (904)
Q Consensus 582 aAH~~GIkVILD~V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~ 661 (904)
+||++||.||||.|+||.+.+... . ..|++. .++....+ .. +.. ..| +.--.|+..++||+||+
T Consensus 222 ~aH~~GIgViLD~V~~HF~~d~~~---L-~~fdg~-~~~e~~~~-----~~--~~~---~~W-g~~i~~~gr~EVR~Fll 285 (628)
T COG0296 222 AAHQAGIGVILDWVPNHFPPDGNY---L-ARFDGT-FLYEHEDP-----RR--GEH---TDW-GTAIFNYGRNEVRNFLL 285 (628)
T ss_pred HHHHcCCEEEEEecCCcCCCCcch---h-hhcCCc-cccccCCc-----cc--ccC---CCc-ccchhccCcHHHHHHHH
Confidence 999999999999999999975421 1 123321 11110000 00 000 011 11224555899999999
Q ss_pred HHHHHHHhccCccEEEecccccccc------------------------chHHHHHHhc---CCC-EEEEeecCCCCccc
Q 002585 662 EWLCWLRNEIGYDGWRLDFVRGFWG------------------------GYVKDYLEAT---EPY-FAVGEYWDSLSYTY 713 (904)
Q Consensus 662 ~~l~~Wi~e~GIDGfRlD~a~~~~~------------------------~f~~~~~~~~---~p~-~liGE~w~~~~~l~ 713 (904)
+++++|+++|+|||+|+||+..|.. +|++...+.+ .|. +.|+|.|.+.+...
T Consensus 286 ~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~~t 365 (628)
T COG0296 286 ANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHVT 365 (628)
T ss_pred HHHHHHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCCce
Confidence 9999999999999999999975432 1222222222 344 68999998743210
Q ss_pred ccCCCCchHHHHHHHHHHhhcCCCcccccchhh-HHHHHhhhchhhhhhhhhcCCCCCCcC--CCCCcceeecccCCCC-
Q 002585 714 GEMDHNQDAHRQRIIDWINAASGTAGAFDVTTK-GILHSALDRCEYWRLSDEKGKPPGVVG--WWPSRAVTFIENHDTG- 789 (904)
Q Consensus 714 g~mny~~~~~~~~i~~~l~~~~g~~~~fdf~l~-~~l~~~l~~~~~~~l~~~~~~~~~~~~--~~P~~~vnflenHDt~- 789 (904)
+...+. .. .|++... ..+++.+.-.+................ ..++..+.|+.|||+-
T Consensus 366 -------------~~~~~g-G~----gf~yk~nmg~m~D~~~y~~~~~~~r~~~h~~~tf~~~y~~se~~~l~~sHDevv 427 (628)
T COG0296 366 -------------LPVAIG-GL----GFGYKWNMGWMHDTLFYFGKDPVYRKYHHGELTFGLLYAFSENVVLPLSHDEVV 427 (628)
T ss_pred -------------eeeccc-cc----chhhhhhhhhHhhHHHhcccCccccccccCCCccccccccceeEecccccccee
Confidence 000000 00 1111110 112222111000000000000000011 2345788999999995
Q ss_pred ---Ccc-CCCCC----ChhHHHHHHHHHHhCCCeeeeecCChhH------------H--------------HHHHHHHHH
Q 002585 790 ---STQ-GHWRF----PGGREMQGYAYILTHPGTPSVFYDHIFS------------H--------------YRQEIEALL 835 (904)
Q Consensus 790 ---R~~-t~~~~----~~~~~klA~allltlPGiP~IYyGdE~~------------W--------------l~~~~r~Li 835 (904)
|.. ..+.+ ..+.++.++++|+++||+|++|||+||+ | +..+.+.|.
T Consensus 428 hGk~sl~~rm~g~~~~~~a~lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~~~~~~~~w~~L~~~~~~g~~~~~~~~~~~ln 507 (628)
T COG0296 428 HGKRSLGERMPGDAWQKFANLRALAAYMWLHPGKPLLFMGEEFGQGREWNFFSSLDWLLLDQAVREGRHKEFRRLVRDLN 507 (628)
T ss_pred ecccchhccCCcchhhhHHHHHHHHHHHHhCCCceeeecchhhccCCCCcccCCCChhhhhhccccchHHHHHHHHHhhH
Confidence 211 11111 3467899999999999999999999984 4 333333333
Q ss_pred HHHHhCccc-----cCCCeeEEeeCC---CEEEEEE-----CCEEEEEEeCCCCCC
Q 002585 836 SVRKRNKIH-----CRSRVEIVKAER---DVYAAII-----DEKVAMKLGPGHYEP 878 (904)
Q Consensus 836 ~lRk~~paL-----~~G~~~~l~~~~---~v~a~~r-----~~~vlvvlnn~~~~~ 878 (904)
++-+..+++ +...+.++..++ ++++|.| .++.+|++||....+
T Consensus 508 ~~y~~~~~l~~~~~~~~~~~W~~~~~~~~~v~af~R~l~~~~~~~lv~~~n~~~~~ 563 (628)
T COG0296 508 ALYRIPDPLHEQDFQPEGFEWIDADDAENSVLAFYRRLLALRHEHLVVVNNFTPVP 563 (628)
T ss_pred HhhccCCccchhhhcccCCceeecCchhhhHHHHHHHHhhcCCceEEEEeCCCCCc
Confidence 344455544 344566666533 5777776 356688888887766
No 35
>PLN02784 alpha-amylase
Probab=100.00 E-value=5.6e-35 Score=346.06 Aligned_cols=163 Identities=27% Similarity=0.488 Sum_probs=148.8
Q ss_pred cccccccceecccCCCCCCCCCCCC-CCCC--CCCCcceeeeeeeeeeeeeeCCeEEEEEEecCCCCceEEEEEecCCCc
Q 002585 47 CSFKKLQKITVSSSTSTSTSPATST-DTTP--VRPGDVFFKETFPLKRTHAVEGKMFVRLQKGKDEKNWQLSVGCNIPGK 123 (904)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~v~~~t~~~~~ 123 (904)
..|+|+|||++|+|+++++.++.++ +.++ ..++.++|||++||.|++.|+|+|+|+|++|++++|++|+|+||+||+
T Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~v~v~~~~~~~k~~v~v~td~~~~ 308 (894)
T PLN02784 229 GALGQLSNILLKDEGSPSKEQDKSSSELDSAAERKGLKGFYEEMPIVKRVAVDNSVTVTVRKCPETAKNLVYLETDLPGD 308 (894)
T ss_pred CccccccchhccCCCCCcccCCCcccccccccccccchhhhhccceeeEEEecceEEEEEecCCCCCceEEEEEcCCCCC
Confidence 5679999999999999999888765 4444 889999999999999999999999999999999999999999999999
Q ss_pred eEEEeeeeecCCCCCCccCCCCCCCCCCccccccceeccccccccCCCceeEEEEeecCCCCceEEEEEEEeCCcchhhh
Q 002585 124 WILHWGVSFVGDNGSEWDQPPKKMRPPGSVSIKDYAIETPLKKLAEGDVFDQVNIDFDTRSDIAAINFVLKDEETGAWYQ 203 (904)
Q Consensus 124 ~~lHWgv~~~~~~~~eW~~pp~~~~P~~s~~~~~~a~~T~~~~~~~~~~~~~~~i~~~~~~~~~~~~Fvl~~~~~~~W~~ 203 (904)
||||||| ||+..+||++||++|+|+||+. |+|||||||++.+++.. ..+.|++|++++||+||||++ +|+|||
T Consensus 309 vvlHWgV--~k~~~~eW~~Pp~~~~P~~sv~-~~kA~eT~~~~~~~~~~---~~~~~~ld~~~~g~~FVLk~~-~g~W~~ 381 (894)
T PLN02784 309 VVVHWGV--CKDGAKTWEIPPEPHPPETSLF-KNKALQTMLQQKDDGNG---SSGLFSLDGELEGLLFVLKLN-EGTWLR 381 (894)
T ss_pred EEEEeEe--ccCCCCcccCCCCCCCCCccee-cccccccccccccCCCc---ceEEEecCCCeeEEEEEEECC-CCchhh
Confidence 9999999 9998899999999999999985 99999999999876633 445677899999999999998 668999
Q ss_pred cCCcceeEeCCcc
Q 002585 204 HRGRDFKVPLVDY 216 (904)
Q Consensus 204 ~~g~df~v~l~~~ 216 (904)
|+|+||||||+..
T Consensus 382 ~~G~DF~Ipl~~~ 394 (894)
T PLN02784 382 CNGNDFYVPLLTS 394 (894)
T ss_pred cCCccEEEeCCch
Confidence 9999999999974
No 36
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.96 E-value=1.1e-27 Score=288.06 Aligned_cols=82 Identities=23% Similarity=0.342 Sum_probs=78.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCCC--CCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 002585 523 GRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (904)
Q Consensus 523 GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~ 600 (904)
+++|++++++|+||++|||++|||+||+++. ++|||++.||+.|||.||+.++|++||++||++||+||+|+|+||++
T Consensus 16 ~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 16 GFTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 6789999999999999999999999999985 88999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 002585 601 AHYQ 604 (904)
Q Consensus 601 ~~~~ 604 (904)
.+++
T Consensus 96 ~~~~ 99 (879)
T PRK14511 96 VGGP 99 (879)
T ss_pred CcCc
Confidence 8763
No 37
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=99.96 E-value=7.3e-29 Score=286.42 Aligned_cols=164 Identities=29% Similarity=0.479 Sum_probs=128.5
Q ss_pred CCCCceeeeecccccCC---CCCCCHHHHHHH-HHHHHHcCCCEEEeCCCcCCC---CCCCCCcccCCCcCCCCCCHH--
Q 002585 504 TGTGFEILCQGFNWESH---KSGRWYMELKEK-ATELSSLGFSVIWLPPPTESV---SPEGYMPRDLYNLSSRYGNID-- 574 (904)
Q Consensus 504 ~~~~y~i~~~~F~Wd~~---~~GGdl~GI~ek-LdYLk~LGVnaI~L~PIfes~---s~hGYd~~Dy~~IDp~lGt~e-- 574 (904)
+-..||.++++|.=... .-|| +++.++| |++||+||+|||+|||||++. ..+||.|++||++-.+|||++
T Consensus 229 sL~IYE~HVrgfS~~E~~v~~~~g-Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~ 307 (757)
T KOG0470|consen 229 SLRIYELHVRGFSSHESKVNTRGG-YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESP 307 (757)
T ss_pred heEEEEEeeccccCCCCccccccc-hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcc
Confidence 45678999999973221 1346 9999999 999999999999999999994 479999999999999999999
Q ss_pred ----HHHHHHHHHHHcCCEEEEEeecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCC-CC-CCCCCCCCCCCCCc
Q 002585 575 ----ELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQ-GR-GNKSSGDNFHAAPN 648 (904)
Q Consensus 575 ----dlk~LV~aAH~~GIkVILD~V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~-~~-~~~~~~~~~~~lpd 648 (904)
|||.||++||..||-||||+|+||++.+.. +.++.|+|.- +..+|. ++ +..++ .+..-
T Consensus 308 ~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~---d~l~~fdGid---------~~~Yf~~~~r~~h~~----~~~r~ 371 (757)
T KOG0470|consen 308 CRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSK---DGLNMFDGID---------NSVYFHSGPRGYHNS----WCSRL 371 (757)
T ss_pred cchHHHHHHHHHHhhCCcEEehhhhhhhcccCcC---CcchhccCcC---------CceEEEeCCcccccc----ccccc
Confidence 999999999999999999999999998432 2222333310 000111 11 11111 23345
Q ss_pred cCCCCHHHHHHHHHHHHHHHhccCccEEEecccccc
Q 002585 649 IDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF 684 (904)
Q Consensus 649 lN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~ 684 (904)
+|+++++|+++|++.++||+.||+|||||||.+..|
T Consensus 372 fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm 407 (757)
T KOG0470|consen 372 FNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSM 407 (757)
T ss_pred ccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhh
Confidence 899999999999999999999999999999998643
No 38
>PLN03244 alpha-amylase; Provisional
Probab=99.96 E-value=1.4e-27 Score=279.75 Aligned_cols=281 Identities=17% Similarity=0.187 Sum_probs=174.2
Q ss_pred cccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCC--CCCC
Q 002585 560 PRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQG--RGNK 637 (904)
Q Consensus 560 ~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~--~~~~ 637 (904)
+.+||+++++|||++|||+||++||++||+||||+|+||++.+... |. +.|+|... .+|.. .+..
T Consensus 427 vt~fFApssRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~--GL-~~fDGt~~----------~Yf~~~~~g~~ 493 (872)
T PLN03244 427 VTNFFAASSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMV--GL-SLFDGSND----------CYFHTGKRGHH 493 (872)
T ss_pred cCcccccCcccCCHHHHHHHHHHHHHCCCEEEEEecCccCCCcccc--ch-hhcCCCcc----------ceeccCCCCcc
Confidence 5689999999999999999999999999999999999999976421 11 12322110 01111 1111
Q ss_pred CCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEeccccccc----------------------c---chHH--
Q 002585 638 SSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW----------------------G---GYVK-- 690 (904)
Q Consensus 638 ~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~----------------------~---~f~~-- 690 (904)
..| +...+|+.+++||++|+++++||+++|||||||+|++..|- . .|++
T Consensus 494 -~~W---Gs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~la 569 (872)
T PLN03244 494 -KHW---GTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILA 569 (872)
T ss_pred -CCC---CCceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecchhheeeccccccccCCccccccccCCchHHHHHHHH
Confidence 111 33568999999999999999999999999999999883111 0 1222
Q ss_pred -HHHHhcCCC-EEEEeecCCCCcccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHH----HHHhhhch--hhhhhh
Q 002585 691 -DYLEATEPY-FAVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGI----LHSALDRC--EYWRLS 762 (904)
Q Consensus 691 -~~~~~~~p~-~liGE~w~~~~~l~g~mny~~~~~~~~i~~~l~~~~g~~~~fdf~l~~~----l~~~l~~~--~~~~l~ 762 (904)
+.+....|. ++|||...+-+.+..- . ..+| ..||+.+.+. ....+... .-+.+.
T Consensus 570 N~~ih~~~P~~itIAEDsS~~P~vt~P---------------v-~~GG--LGFDYKWnMgwmdd~lkylk~~pderw~~~ 631 (872)
T PLN03244 570 NEILHALHPKIITIAEDATYYPGLCEP---------------T-SQGG--LGFDYYVNLSAPDMWLDFLDNIPDHEWSMS 631 (872)
T ss_pred HHHHHHhCCCeEEEEEcCCCCcCcccc---------------C-CCCC--CCccceecCcchHHHHHHHHhCCCcccCHH
Confidence 334455787 7999987653221100 0 0011 1222222111 11111110 001111
Q ss_pred hhcCCCCCCcCCCCCcceeecccCCCC----CccCC-C---------CC------ChhHHHHHHHHHHhCCCee-eeecC
Q 002585 763 DEKGKPPGVVGWWPSRAVTFIENHDTG----STQGH-W---------RF------PGGREMQGYAYILTHPGTP-SVFYD 821 (904)
Q Consensus 763 ~~~~~~~~~~~~~P~~~vnflenHDt~----R~~t~-~---------~~------~~~~~klA~allltlPGiP-~IYyG 821 (904)
...... ....++...+++|.||||.+ +.... + .. .....||+.++.+++||.| ++|||
T Consensus 632 ~ItfsL-~~nrr~~ek~~aYsESHDqaLvGdKTlaf~l~d~~~y~~~~~~~vv~Rg~aLhKMiRllt~~~~G~kkLnFMG 710 (872)
T PLN03244 632 KIVSTL-IANKEYADKMLSYAENHNQSISGGRSFAEILFGAIDEDPLGGKELLDRGCSLHKMIRLITFTIGGHAYLNFMG 710 (872)
T ss_pred HHhhhh-hcccCCcceEEEEecccceeccccchHHhhhcccccccccccchhhhhhhHHHHHHHHHHHHccCccceeecc
Confidence 111000 01123445789999999993 21111 1 00 1123466777889999988 79999
Q ss_pred ChhH----------------------H----------HHHHHHHHHHHHHhCccccCCCeeEEe--eCCCEEEEEECCEE
Q 002585 822 HIFS----------------------H----------YRQEIEALLSVRKRNKIHCRSRVEIVK--AERDVYAAIIDEKV 867 (904)
Q Consensus 822 dE~~----------------------W----------l~~~~r~Li~lRk~~paL~~G~~~~l~--~~~~v~a~~r~~~v 867 (904)
.||+ | |.+|+|.|++|++++++|..|..-+.. .++.|+||.|. .+
T Consensus 711 NEFGhpe~~dfPr~gN~~s~~~arrdW~Lld~~~hk~L~~FdrdLn~Ly~~~~aL~~gf~wI~~~d~e~kVIAF~R~-~L 789 (872)
T PLN03244 711 NEFGHPERIEFPMPSNNFSFSLANRCWDLLENEVHHHLFSFDKDLMDLDENEGILSRGLPNIHHVKDAAMVISFMRG-PF 789 (872)
T ss_pred cccCCchheeccccCCCccccccccCccccCChhHHHHHHHHHHHHHHHhcCcccccCCcEEeeecCCCCEEEEEec-CE
Confidence 9863 4 788999999999999999866543333 34589999997 47
Q ss_pred EEEEeCCCCC
Q 002585 868 AMKLGPGHYE 877 (904)
Q Consensus 868 lvvlnn~~~~ 877 (904)
|+|+|.....
T Consensus 790 LfVfNF~P~~ 799 (872)
T PLN03244 790 LFIFNFHPSN 799 (872)
T ss_pred EEEEeCCCCC
Confidence 7777776543
No 39
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.4e-25 Score=238.04 Aligned_cols=331 Identities=24% Similarity=0.406 Sum_probs=237.3
Q ss_pred CceeeeecccccCCCCCCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCC--------CCCCCCcccCCCcCCCCCCHHHHH
Q 002585 507 GFEILCQGFNWESHKSGRWYMELK-EKATELSSLGFSVIWLPPPTESV--------SPEGYMPRDLYNLSSRYGNIDELK 577 (904)
Q Consensus 507 ~y~i~~~~F~Wd~~~~GGdl~GI~-ekLdYLk~LGVnaI~L~PIfes~--------s~hGYd~~Dy~~IDp~lGt~edlk 577 (904)
+...+++.|.|. +.+|. +.-..|+--|+.+|+++|+.|.. .-.+|+|+. |+++.+-|.+++|+
T Consensus 27 ~R~tmVHLFEWK-------W~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvS-YKL~tRSGNE~eF~ 98 (504)
T KOG2212|consen 27 GRTTIVHLFEWK-------WVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNEDEFR 98 (504)
T ss_pred CcceEEEEEEee-------hHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccce-EEeeccCCCHHHHH
Confidence 456788999986 44554 44558899999999999999976 224799997 59999999999999
Q ss_pred HHHHHHHHcCCEEEEEeecccccccCC-----CCCCCcc-----cCCCCCCCCCCCccCCCCCCCC--------------
Q 002585 578 DVVNKFHDVGMKILGDVVLNHRCAHYQ-----NQNGVWN-----IFGGRLNWDDRAVVADDPHFQG-------------- 633 (904)
Q Consensus 578 ~LV~aAH~~GIkVILD~V~NHt~~~~~-----~~~g~~~-----~y~g~~~W~~~~~~~~~~~f~~-------------- 633 (904)
.||.+|.+-|+||++|+|+||++.... ...|.+. .|.| +++...+|+.
T Consensus 99 dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPG--------VPYs~~DFn~~kc~~~~~~i~~~N 170 (504)
T KOG2212|consen 99 DMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPG--------VPYSGWDFNDGKCKTGSGDIENYN 170 (504)
T ss_pred HHHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCCC--------CCcccccCCCcccCCCcccccccc
Confidence 999999999999999999999986321 1122211 1222 1222222322
Q ss_pred CCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEeccccccccchHHHHHHhcC---C--------CEEE
Q 002585 634 RGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLEATE---P--------YFAV 702 (904)
Q Consensus 634 ~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~~f~~~~~~~~~---p--------~~li 702 (904)
.......+..-+|-|||..+..||..|++.+.+++ +.||.|||.|+++|||++-+..++..++ - .|++
T Consensus 171 da~~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLi-dlGVAGFRvDAsKHMwp~Di~~I~~~l~nLnsD~f~s~srpfi~ 249 (504)
T KOG2212|consen 171 DATQVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLI-DIGVAGFRVDASKHMWPGDIKAILDKLHNLNSDWFPSGSKPFIY 249 (504)
T ss_pred chhhhhcceEeecchhhhcchHHHHHHHHHHHHHH-HhccceeeechhhccChHHHHHHHHHHhhcccccccCCCCceeh
Confidence 11112345668899999999999999999999999 9999999999999999998888776541 1 1566
Q ss_pred EeecCCCCcccccCCCCchHHHHHHH--HHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCC-cc
Q 002585 703 GEYWDSLSYTYGEMDHNQDAHRQRII--DWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPS-RA 779 (904)
Q Consensus 703 GE~w~~~~~l~g~mny~~~~~~~~i~--~~l~~~~g~~~~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~-~~ 779 (904)
-|+.+... ++|. +|+ ..|....|. +...+..++.+.+.+.+...|+..-+. .|+ ++
T Consensus 250 qEVID~Gg--------------E~v~~~dY~--g~G~~TeF~--f~~~ig~~~r~~~~~kyL~nwG~~wGf---~~s~~~ 308 (504)
T KOG2212|consen 250 QEVIDLGG--------------EPIKSSDYF--GNGRVTEFK--FGAKLGTVIRKWNKMKYLKNWGEGWGF---MPSDRA 308 (504)
T ss_pred hhhhhcCC--------------ceeeccccc--CCceeeeee--chHHHHHHHhcchhHHHHHhcCCccCc---CCCcce
Confidence 66654311 1111 122 223333444 445688888777777777777644332 343 78
Q ss_pred eeecccCCCCCccCCCC------CChhHHHHHHHHHHhCC-CeeeeecCChh----------------------------
Q 002585 780 VTFIENHDTGSTQGHWR------FPGGREMQGYAYILTHP-GTPSVFYDHIF---------------------------- 824 (904)
Q Consensus 780 vnflenHDt~R~~t~~~------~~~~~~klA~allltlP-GiP~IYyGdE~---------------------------- 824 (904)
++|++|||+.|-...-+ ...++++||.+++|..| |+|-+....-|
T Consensus 309 L~FvDNHDNQR~~gagga~VltYK~~~~YkmA~~FmLA~PyG~~RVMSSFaF~~~D~~PP~~~~~~i~SP~Fn~D~tC~~ 388 (504)
T KOG2212|consen 309 LVFVDNHDNQRGHGAGGASVLTYKDARLYKMAVGFMLAHPYGFTRVMSSFAFDVNDWVPPPNNNGVIKSPTFNPDTTCGN 388 (504)
T ss_pred EEEeccCcccccCCCCcceEEEecchhhhhhhhhhheecccCcchhheeeeeecCCCCCCCCCCcceecceeCCCCcccC
Confidence 99999999999755311 25788999999999999 99988876432
Q ss_pred HH----HHHHHHHHHHHHHhCccccCCCeeEEeeC-CCEEEEEECCEEEEEEeCCCCCC
Q 002585 825 SH----YRQEIEALLSVRKRNKIHCRSRVEIVKAE-RDVYAAIIDEKVAMKLGPGHYEP 878 (904)
Q Consensus 825 ~W----l~~~~r~Li~lRk~~paL~~G~~~~l~~~-~~v~a~~r~~~vlvvlnn~~~~~ 878 (904)
+| -...|++|.++|+.-. .-.++-.+.+ .+-++|.|+++-.+++||.++.-
T Consensus 389 GWvCEHRWrqI~~Mv~FrnAV~---~t~~~~w~d~g~nqIaF~Rg~kGF~A~Nn~~~d~ 444 (504)
T KOG2212|consen 389 GWVCEHRWRQIRNMVNFRNAVD---GTPFTNWYDNGSNQIAFGRGNRGFIAFNNDDWDF 444 (504)
T ss_pred ceeeechHHHHHHHHhhhhhcC---CccccceeeCCCcEEEEecCCccEEEEeCcchhH
Confidence 46 7788999999998752 2223333344 57899999999999999988653
No 40
>smart00642 Aamy Alpha-amylase domain.
Probab=99.90 E-value=4e-24 Score=215.82 Aligned_cols=92 Identities=33% Similarity=0.523 Sum_probs=88.1
Q ss_pred eeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCC----CCCCCCcccCCCcCCCCCCHHHHHHHHHHHHH
Q 002585 510 ILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV----SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD 585 (904)
Q Consensus 510 i~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~----s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~ 585 (904)
++++.|.|.....+|||++|+++|+||++||||+|||+||+++. ++|||++.||++|||+|||++||++||++||+
T Consensus 2 i~~~~F~~~~~~~~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~ 81 (166)
T smart00642 2 IYPDRFADGNGDGGGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHA 81 (166)
T ss_pred eeeccccCCCCCCCcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHH
Confidence 67888998877788999999999999999999999999999999 78999999999999999999999999999999
Q ss_pred cCCEEEEEeecccccc
Q 002585 586 VGMKILGDVVLNHRCA 601 (904)
Q Consensus 586 ~GIkVILD~V~NHt~~ 601 (904)
+||+||+|+|+||++.
T Consensus 82 ~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 82 RGIKVILDVVINHTSD 97 (166)
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999999994
No 41
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.79 E-value=7.8e-19 Score=223.38 Aligned_cols=81 Identities=20% Similarity=0.275 Sum_probs=77.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCC--CCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 002585 522 SGRWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (904)
Q Consensus 522 ~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt 599 (904)
.+++|++++++||||++|||++|||+|||++. ++|||++.||+.|||.||+.++|++||++||++||+||||+|+||+
T Consensus 753 ~~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~ 832 (1693)
T PRK14507 753 KDFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHM 832 (1693)
T ss_pred CCCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 36899999999999999999999999999964 8899999999999999999999999999999999999999999999
Q ss_pred ccc
Q 002585 600 CAH 602 (904)
Q Consensus 600 ~~~ 602 (904)
+.+
T Consensus 833 ~~~ 835 (1693)
T PRK14507 833 GVG 835 (1693)
T ss_pred CCC
Confidence 953
No 42
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.70 E-value=8.6e-17 Score=186.08 Aligned_cols=78 Identities=23% Similarity=0.383 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCcCCC--CCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 002585 525 WYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~~ 602 (904)
+|....+.||||++|||.++|++|||.+. |.||||++|+..|+|.+|+.+.|.+||+++|++||.+|+|+|+||++..
T Consensus 17 tF~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav~ 96 (889)
T COG3280 17 TFADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAVG 96 (889)
T ss_pred CHHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhcc
Confidence 59999999999999999999999999987 8999999999999999999999999999999999999999999999987
No 43
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.48 E-value=4.6e-14 Score=175.29 Aligned_cols=83 Identities=19% Similarity=0.263 Sum_probs=78.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCCC-CCCCCCcccCCCcCCCCC----CHHHHHHHHHHHHHc-CCEEEEEeec
Q 002585 523 GRWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYG----NIDELKDVVNKFHDV-GMKILGDVVL 596 (904)
Q Consensus 523 GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~-s~hGYd~~Dy~~IDp~lG----t~edlk~LV~aAH~~-GIkVILD~V~ 596 (904)
-|.|.++.++|+||++||+|+|||+||++.+ ++|.|++.||+.|||.|| +.+||++||++||++ ||++|+|+|+
T Consensus 128 mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~ 207 (1464)
T TIGR01531 128 LGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVF 207 (1464)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 5899999999999999999999999999555 999999999999999994 899999999999997 9999999999
Q ss_pred ccccccCCC
Q 002585 597 NHRCAHYQN 605 (904)
Q Consensus 597 NHt~~~~~~ 605 (904)
|||+.+|+|
T Consensus 208 NHTa~ds~W 216 (1464)
T TIGR01531 208 NHTANNSPW 216 (1464)
T ss_pred cccccCCHH
Confidence 999999864
No 44
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=98.69 E-value=3.2e-08 Score=112.42 Aligned_cols=84 Identities=20% Similarity=0.285 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCCC-CCCCCCcccCCCcCCCCCCH------HHHHHHHHHHH-HcCCEEEEEe
Q 002585 523 GRWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNI------DELKDVVNKFH-DVGMKILGDV 594 (904)
Q Consensus 523 GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~-s~hGYd~~Dy~~IDp~lGt~------edlk~LV~aAH-~~GIkVILD~ 594 (904)
-|.|....++|..++++|+|.|+++|+.+-+ |+..|.+.|...+||.|... ++++++|.+++ +.||..|.|+
T Consensus 18 ~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv 97 (423)
T PF14701_consen 18 MGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV 97 (423)
T ss_pred cCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE
Confidence 5899999999999999999999999999988 78999999999999998653 69999999995 7999999999
Q ss_pred ecccccccCCCC
Q 002585 595 VLNHRCAHYQNQ 606 (904)
Q Consensus 595 V~NHt~~~~~~~ 606 (904)
|+|||+.+++|-
T Consensus 98 V~NHtA~nS~Wl 109 (423)
T PF14701_consen 98 VLNHTANNSPWL 109 (423)
T ss_pred eeccCcCCChHH
Confidence 999999998763
No 45
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=98.55 E-value=2.6e-07 Score=106.88 Aligned_cols=134 Identities=19% Similarity=0.255 Sum_probs=96.2
Q ss_pred CCCCHHHHHHHHHHHHH---------------cCCCEEEeCCCcCCC---------------------------------
Q 002585 522 SGRWYMELKEKATELSS---------------LGFSVIWLPPPTESV--------------------------------- 553 (904)
Q Consensus 522 ~GGdl~GI~ekLdYLk~---------------LGVnaI~L~PIfes~--------------------------------- 553 (904)
-+|+|.|+++--..|++ .|+++|+|+||=+..
T Consensus 191 p~GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~~~~~d~~~~~~~~~~~~~~ 270 (811)
T PF14872_consen 191 PEGTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFSIRPEDEDELDPETEGVHED 270 (811)
T ss_pred CCcchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceeeecccccccccccccccccC
Confidence 36899998877766643 699999999985421
Q ss_pred ------------CCCCCCcc--cCCCcCCC-CCC--HHHHHHHHHHHHH---cCCEEEEEeecccccccCCC-CCCCccc
Q 002585 554 ------------SPEGYMPR--DLYNLSSR-YGN--IDELKDVVNKFHD---VGMKILGDVVLNHRCAHYQN-QNGVWNI 612 (904)
Q Consensus 554 ------------s~hGYd~~--Dy~~IDp~-lGt--~edlk~LV~aAH~---~GIkVILD~V~NHt~~~~~~-~~g~~~~ 612 (904)
.|||||+. -.-+.+|. ++| ++||-.||+.+|. ..|+||+|+|+.|.-..... -++.|
T Consensus 271 ~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDlVyGHADNQ~~~LLn~~f-- 348 (811)
T PF14872_consen 271 GDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDLVYGHADNQALDLLNRRF-- 348 (811)
T ss_pred ceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeeecccccchhhHhhhhhh--
Confidence 35777753 23344544 233 7899999999997 56999999999998654321 22222
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEecccccc
Q 002585 613 FGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF 684 (904)
Q Consensus 613 y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~ 684 (904)
+.| +.=| .-++|+.+|.||+-+++.-+.=+ ++|+||+|+|.+..|
T Consensus 349 lkG------------------PnMY--------GQdlnhq~P~VRAILLEmQRRK~-n~GaDGIRVDGgQDF 393 (811)
T PF14872_consen 349 LKG------------------PNMY--------GQDLNHQNPVVRAILLEMQRRKI-NTGADGIRVDGGQDF 393 (811)
T ss_pred ccC------------------Cccc--------cccccccChHHHHHHHHHHHhhc-ccCCceeEecccccc
Confidence 111 1111 23699999999999999887777 999999999999743
No 46
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=98.47 E-value=2.5e-06 Score=99.83 Aligned_cols=202 Identities=21% Similarity=0.345 Sum_probs=118.4
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHHHh---------ccCccEEEeccccccccchHHH---HHHhc----------CCCE
Q 002585 643 FHAAPNIDHSQDFVRKDIKEWLCWLRN---------EIGYDGWRLDFVRGFWGGYVKD---YLEAT----------EPYF 700 (904)
Q Consensus 643 ~~~lpdlN~~np~Vr~~i~~~l~~Wi~---------e~GIDGfRlD~a~~~~~~f~~~---~~~~~----------~p~~ 700 (904)
+--..|+|-+||.|+.+.++|+.|++. +..+||+|+||++.+..+.++. +.++. +..+
T Consensus 140 fLLaNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADlLqia~dyfkaaYgv~~~~a~An~Hl 219 (809)
T PF02324_consen 140 FLLANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADLLQIAGDYFKAAYGVDKNDANANKHL 219 (809)
T ss_dssp --SSEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THHHHHHHHHHHHHH-TTTBHHHHCTC-
T ss_pred eEEeccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHHHHHHHHHHHHHhCCCcChhhHhhhh
Confidence 344568999999999999999999995 5679999999999999887753 33332 3446
Q ss_pred EEEeecCCCCcccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchh-----hhhhhhhcC--CCCCCcC
Q 002585 701 AVGEYWDSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCE-----YWRLSDEKG--KPPGVVG 773 (904)
Q Consensus 701 liGE~w~~~~~l~g~mny~~~~~~~~i~~~l~~~~g~~~~fdf~l~~~l~~~l~~~~-----~~~l~~~~~--~~~~~~~ 773 (904)
.|-|.|.... ..|+...++....+|..++..|...|.... +..+....- +......
T Consensus 220 SilE~ws~nd-----------------~~y~~~~g~~qL~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slvnR~~d~~e 282 (809)
T PF02324_consen 220 SILEAWSSND-----------------PDYVKDTGNPQLTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLVNRSNDSTE 282 (809)
T ss_dssp -EESSSTTTH-----------------HHHHHHTTSSSBEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSSECSEE--S
T ss_pred eeeeccccCC-----------------hHHHhcCCCceeeecHHHHHHHHHHhcCCccccccHHHHhhhhhcccccCCcC
Confidence 7889998631 145555666666778877766766655431 222222110 0000001
Q ss_pred CCCCcceeecccCCCCC-----------cc---CCCCC-----------------------ChhHHHHHHHHHHhCC-Ce
Q 002585 774 WWPSRAVTFIENHDTGS-----------TQ---GHWRF-----------------------PGGREMQGYAYILTHP-GT 815 (904)
Q Consensus 774 ~~P~~~vnflenHDt~R-----------~~---t~~~~-----------------------~~~~~klA~allltlP-Gi 815 (904)
.-+...-.|+.+||.+- +. ..+.+ ..-.+..+||+|||-. .+
T Consensus 283 n~a~pNYsFvrAHDsevQ~vI~~II~~~i~~~~dg~t~t~d~l~qAf~iYnaD~~~~~K~Yt~yNiPsaYAllLtNKDTV 362 (809)
T PF02324_consen 283 NEAQPNYSFVRAHDSEVQTVIAQIIKDKINPNSDGLTFTLDQLKQAFEIYNADQKKTDKKYTQYNIPSAYALLLTNKDTV 362 (809)
T ss_dssp SESS-EEEES-BSSTTTHHHHHHHHHHHT-TTTCTTC--HHHHHHHHHHHHHHHTSSS-SSS-S-HHHHHHHHHH-SSSE
T ss_pred CcccCceeeeecccHHHHHHHHHHHHhhcCCcccCccCCHHHHHHHHHHHHHHHHHhhhhhhccccHHHHHHHHhCCCCC
Confidence 11113457999999951 00 00000 1123578999999965 99
Q ss_pred eeeecCChhH----H------HHHHHHHHHHHHHhCccccCCC-eeE--EeeC-CCEEEEEE
Q 002585 816 PSVFYDHIFS----H------YRQEIEALLSVRKRNKIHCRSR-VEI--VKAE-RDVYAAII 863 (904)
Q Consensus 816 P~IYyGdE~~----W------l~~~~r~Li~lRk~~paL~~G~-~~~--l~~~-~~v~a~~r 863 (904)
|.|||||-|. . .++-|..|++-|.++-+. |. +.. +..+ .+++.-.|
T Consensus 363 PRVYYGDLYtDdGQYMa~KSpYyDaI~tLLKaRikYvaG--GQtM~~~~~~~~~~~vLtSVR 422 (809)
T PF02324_consen 363 PRVYYGDLYTDDGQYMATKSPYYDAITTLLKARIKYVAG--GQTMAVTYLNGDNSGVLTSVR 422 (809)
T ss_dssp EEEEHHHHBESSSSTTTSB-TTHHHHHHHHHHHHHH--S---EEEEE--EEETTTSEEEEEE
T ss_pred ceEEecccccccchhhhhcCchHHHHHHHHHHHHHhhcC--CceeeeecccCCCCceEEEEe
Confidence 9999999862 1 789999999999998542 22 222 2223 46887655
No 47
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.15 E-value=1.4e-05 Score=89.10 Aligned_cols=142 Identities=15% Similarity=0.158 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCcCCC--CCCCCCcccCCCcCCCCC--CHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 002585 525 WYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYG--NIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lG--t~edlk~LV~aAH~~GIkVILD~V~NHt~ 600 (904)
+-+.+.+.|+.|+++|+|+|++-=-.... ....+.|...+......+ +-+-|+.+|++||++||+|..=+.+...+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 46789999999999999999874221111 111222211111111111 25679999999999999999877554333
Q ss_pred ccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEecc
Q 002585 601 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 680 (904)
Q Consensus 601 ~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~ 680 (904)
.... .. ......|...........+. ....+..=||..+|+||++|+++++..++.|.|||+-||-
T Consensus 97 ~~~~---~~---~~~~p~~~~~~~~~~~~~~~--------~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDd 162 (311)
T PF02638_consen 97 PDVS---HI---LKKHPEWFAVNHPGWVRTYE--------DANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDD 162 (311)
T ss_pred Cchh---hh---hhcCchhheecCCCceeecc--------cCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEecc
Confidence 2110 00 00001121000000000000 0001122389999999999999999999999999999994
No 48
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=97.91 E-value=7.6e-05 Score=72.91 Aligned_cols=125 Identities=14% Similarity=0.128 Sum_probs=78.2
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCC--CCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc--cc-cccCC
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEG--YMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN--HR-CAHYQ 604 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hG--Yd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~N--Ht-~~~~~ 604 (904)
.+-+++||++|+|+|.+.- .+-|| |-|+.-....|.++ .+-|+++|++||++||+|+.=+-++ .. ...|
T Consensus 3 ~~~~~~lk~~~v~si~i~a----~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~H- 76 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFA----KCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERH- 76 (132)
T ss_pred HHHHHHHHHhCCCEEEEEc----ccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhC-
Confidence 4567899999999999852 22233 55665677789998 7889999999999999998766655 11 1112
Q ss_pred CCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEecc
Q 002585 605 NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 680 (904)
Q Consensus 605 ~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~ 680 (904)
++|.-....+. +... ......++ ..+-.++ .++++++..++..++.|.+||+=+|.
T Consensus 77 ------------PeW~~~~~~G~-~~~~---~~~~~~~~---~~~c~ns-~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 77 ------------PEWFVRDADGR-PMRG---ERFGYPGW---YTCCLNS-PYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred ------------CceeeECCCCC-CcCC---CCcCCCCc---eecCCCc-cHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 34432111100 0000 00000111 1122223 45699999999999889999998884
No 49
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=97.62 E-value=8.8e-05 Score=87.28 Aligned_cols=77 Identities=22% Similarity=0.484 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCcCCC---------CCCCCCcccCCCcC----CCCCCHHHHHHHHHHHHHcCCEEE
Q 002585 525 WYMELKEKATELSSLGFSVIWLPPPTESV---------SPEGYMPRDLYNLS----SRYGNIDELKDVVNKFHDVGMKIL 591 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~---------s~hGYd~~Dy~~ID----p~lGt~edlk~LV~aAH~~GIkVI 591 (904)
+-.-|.+..+-+|++|||..+|.|-+.+. -..||+-.|-|.+- ..||+.+||+.-|+++|+.||+||
T Consensus 585 tN~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~ptKYGs~~dL~~AikALH~~Giqvi 664 (809)
T PF02324_consen 585 TNVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPTKYGSVEDLRNAIKALHAAGIQVI 664 (809)
T ss_dssp HHHHHHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-BTTB-HHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCCCCCCHHHHHHHHHHHHHcCcchh
Confidence 46779999999999999999999999876 24799999988885 789999999999999999999999
Q ss_pred EEeecccccc
Q 002585 592 GDVVLNHRCA 601 (904)
Q Consensus 592 LD~V~NHt~~ 601 (904)
.|.|++.+-.
T Consensus 665 aDwVpdQiYn 674 (809)
T PF02324_consen 665 ADWVPDQIYN 674 (809)
T ss_dssp EEE-TSEE--
T ss_pred hhhchHhhhC
Confidence 9999998753
No 50
>PF07821 Alpha-amyl_C2: Alpha-amylase C-terminal beta-sheet domain; InterPro: IPR012850 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C terminus. This domain is organised as a five-stranded anti-parallel beta-sheet [, ]. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0005975 carbohydrate metabolic process; PDB: 1AVA_B 1BG9_A 1AMY_A 1RP8_A 2QPU_A 3BSG_A 2QPS_A 3BSH_A 1RP9_A 1HT6_A ....
Probab=97.57 E-value=0.00016 Score=60.18 Aligned_cols=58 Identities=53% Similarity=0.960 Sum_probs=45.1
Q ss_pred hCccccCCCeeEEeeCCCEEEEEECCEEEEEEeCCCCCCCCCCCCeEEEEcCCCeEEecc
Q 002585 840 RNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWSFVTEGRDYKSNLA 899 (904)
Q Consensus 840 ~~paL~~G~~~~l~~~~~v~a~~r~~~vlvvlnn~~~~~~~g~~~~~~~~~g~~y~vw~~ 899 (904)
++...++..++++.++.++|+...+++++|.|+..+..| .+ .+|.++.+|.+|+||+.
T Consensus 2 r~gI~~~S~v~I~~Ae~d~YaA~Id~kv~~KiGp~~~~P-~~-~~w~~a~~G~dyaVWek 59 (59)
T PF07821_consen 2 RNGIHCRSKVKILAAEADLYAAIIDDKVIMKIGPRDWSP-SG-SGWKLAASGDDYAVWEK 59 (59)
T ss_dssp HTT--TT--EEEEEEETTEEEEEETTTEEEEESS-GGS-----TTEEEEEEETTEEEEEE
T ss_pred CcccCCCCceEEEEecCCcEEEEECCeEEEEECCCcccc-CC-CCcEEEeECCcEEEEeC
Confidence 344557788999999999999999999999999999888 43 46999999999999973
No 51
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.00058 Score=78.09 Aligned_cols=142 Identities=15% Similarity=0.110 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcCCC--CCCCCCcccCCC--cCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 002585 524 RWYMELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYN--LSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~--IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt 599 (904)
.+=.++.+.||.|+.||||+||..=.-... ....+.+..=.. +-..-++-+-|..+|++||++||+|+-=+-+--+
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~~ 140 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYRM 140 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhccc
Confidence 345679999999999999999954221111 111111110000 0001233466899999999999999987777666
Q ss_pred cccCCCCCCCcccCCCC-CCCCCCCccCCCCCCCCCCC-CCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEE
Q 002585 600 CAHYQNQNGVWNIFGGR-LNWDDRAVVADDPHFQGRGN-KSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWR 677 (904)
Q Consensus 600 ~~~~~~~~g~~~~y~g~-~~W~~~~~~~~~~~f~~~~~-~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfR 677 (904)
+..... .... ..|..... ++. +....++....=||-..|+||++|.+.+...++.|.|||.-
T Consensus 141 a~~~s~-------~~~~~p~~~~~~~---------~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQ 204 (418)
T COG1649 141 APPTSP-------LTKRHPHWLTTKR---------PGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQ 204 (418)
T ss_pred CCCCCh-------hHhhCCCCcccCC---------CCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCcee
Confidence 543210 0000 11211000 000 00001110233488899999999999999999999999999
Q ss_pred eccc
Q 002585 678 LDFV 681 (904)
Q Consensus 678 lD~a 681 (904)
||--
T Consensus 205 fDd~ 208 (418)
T COG1649 205 FDDY 208 (418)
T ss_pred ccee
Confidence 9964
No 52
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=97.31 E-value=0.011 Score=70.21 Aligned_cols=44 Identities=14% Similarity=-0.021 Sum_probs=35.2
Q ss_pred CCHH-HHHHHHHHHHHcCCCEEEeCCCcCCC-CCCCCCcccCCCcC
Q 002585 524 RWYM-ELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLS 567 (904)
Q Consensus 524 Gdl~-GI~ekLdYLk~LGVnaI~L~PIfes~-s~hGYd~~Dy~~ID 567 (904)
|||- ++.+-++.+++.|++.|+|+|+.... .+..|.+.+-+.+|
T Consensus 23 GDfg~dl~~~id~~~~~G~~~~qilPl~~~~~~~SPY~~~S~~aln 68 (497)
T PRK14508 23 GDFGKGAYEFIDFLAEAGQSYWQILPLGPTGYGDSPYQSFSAFAGN 68 (497)
T ss_pred cchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCcccccccC
Confidence 9995 99999999999999999999999865 33456665544444
No 53
>smart00810 Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C-terminus. This domain is organised as a five-stranded anti-parallel beta-sheet.
Probab=97.27 E-value=0.0012 Score=55.45 Aligned_cols=60 Identities=40% Similarity=0.564 Sum_probs=47.5
Q ss_pred hCccccCCCeeEEeeCCCEEEEEECCEEEEEEeCCCCCCCCCCCCeEEEEcCCCeEEecc
Q 002585 840 RNKIHCRSRVEIVKAERDVYAAIIDEKVAMKLGPGHYEPPSGSQNWSFVTEGRDYKSNLA 899 (904)
Q Consensus 840 ~~paL~~G~~~~l~~~~~v~a~~r~~~vlvvlnn~~~~~~~g~~~~~~~~~g~~y~vw~~ 899 (904)
++...++..++++.++.++|+...+++++|-|+..-....-.+.+|+++++|.+|+||+.
T Consensus 2 r~gI~~~S~v~I~~Ae~dlY~A~Id~kv~~KiGp~~~~~~~~P~~w~~a~sG~~yaVWek 61 (61)
T smart00810 2 RNGIHSRSSLKILAAEADLYVAMIDEKVIMKIGPRYDVGNLIPSGFHLAASGNDYAVWEK 61 (61)
T ss_pred ccccCCCCceEEEEecCCcEEEEeCCeEEEEECCCCCcCccCCCCCEEEEECCCEEEEeC
Confidence 344557788999999999999999999999999963222112345999999999999974
No 54
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=97.21 E-value=0.001 Score=59.97 Aligned_cols=47 Identities=9% Similarity=0.118 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhCccccCCCeeEEee----CCCEEEEEE--C-CEEEEEEeCCCC
Q 002585 830 EIEALLSVRKRNKIHCRSRVEIVKA----ERDVYAAII--D-EKVAMKLGPGHY 876 (904)
Q Consensus 830 ~~r~Li~lRk~~paL~~G~~~~l~~----~~~v~a~~r--~-~~vlvvlnn~~~ 876 (904)
+||+||+|||++|+|+.|....+.. ++.++++.| + +.++|++|.+..
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~~ 54 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSDE 54 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SSS
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCCC
Confidence 6999999999999999998877663 456777777 4 467777777664
No 55
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=97.15 E-value=0.00042 Score=83.25 Aligned_cols=81 Identities=20% Similarity=0.295 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcCCC-CCCCCCcccCCCcCCCCC------CHHHHHHHHHHHHH-cCCEEEEEee
Q 002585 524 RWYMELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYG------NIDELKDVVNKFHD-VGMKILGDVV 595 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~-s~hGYd~~Dy~~IDp~lG------t~edlk~LV~aAH~-~GIkVILD~V 595 (904)
|.|.....+|.-.|+-|.|.|+++|+.+-+ ++.-|...|-..+++.+. +.+|.++||+.+|+ -||--|-|+|
T Consensus 139 Gpl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~DvV 218 (1521)
T KOG3625|consen 139 GPLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITDVV 218 (1521)
T ss_pred CChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeehhh
Confidence 788899999999999999999999999987 888999999999999987 78999999999986 5899999999
Q ss_pred cccccccCC
Q 002585 596 LNHRCAHYQ 604 (904)
Q Consensus 596 ~NHt~~~~~ 604 (904)
+||++.++.
T Consensus 219 ~NHtAnns~ 227 (1521)
T KOG3625|consen 219 YNHTANNSK 227 (1521)
T ss_pred hhccccCCc
Confidence 999999865
No 56
>PLN02635 disproportionating enzyme
Probab=97.14 E-value=0.017 Score=68.86 Aligned_cols=58 Identities=19% Similarity=0.016 Sum_probs=40.2
Q ss_pred eeeeecccccCCCCC-CCHHH-HHHHHHHHHHcCCCEEEeCCCcCCC-----CCCCCCcccCCCcC
Q 002585 509 EILCQGFNWESHKSG-RWYME-LKEKATELSSLGFSVIWLPPPTESV-----SPEGYMPRDLYNLS 567 (904)
Q Consensus 509 ~i~~~~F~Wd~~~~G-Gdl~G-I~ekLdYLk~LGVnaI~L~PIfes~-----s~hGYd~~Dy~~ID 567 (904)
.++++-|.--+ ..| |||-. ...-+|.+++.|.+.++|+|+.... .+..|.+.+-+..|
T Consensus 31 Gvll~l~SLps-~~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs~~S~fa~N 95 (538)
T PLN02635 31 GILLHPTSLPG-PYGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYSGQDANCGN 95 (538)
T ss_pred EEEEccccCCC-CCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCcccccccccC
Confidence 35665543322 245 99977 4589999999999999999998874 34566665544433
No 57
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.58 E-value=0.018 Score=64.13 Aligned_cols=136 Identities=18% Similarity=0.184 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHHcCC--CEEEeCCCcCCCCCCCCCcccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 002585 524 RWYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~LGV--naI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~ 600 (904)
-+-+.|.+.++.++++|| ++|+|=--+... | .| +..|+ +|- +.++||+++|++|||+++=+-+ +++
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~----~--g~-f~~d~~~FP---dp~~mi~~l~~~G~k~~l~i~P-~i~ 95 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWETC----Y--GD-FDFDPTKFP---DPKGMIDQLHDLGFRVTLWVHP-FIN 95 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCcccc----C--Cc-cccChhhCC---CHHHHHHHHHHCCCeEEEEECC-eeC
Confidence 356789999999999994 677765322111 1 12 34453 554 4899999999999999998877 444
Q ss_pred ccCCCCC-CCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEec
Q 002585 601 AHYQNQN-GVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 679 (904)
Q Consensus 601 ~~~~~~~-g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD 679 (904)
.++...+ +.. ..+.-.......+ + ....|.+ ...-+|+.||++|+.+.+.++.++.+.|||||-+|
T Consensus 96 ~~s~~~~e~~~------~g~~vk~~~g~~~-~----~~~~w~g--~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D 162 (303)
T cd06592 96 TDSENFREAVE------KGYLVSEPSGDIP-A----LTRWWNG--TAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFD 162 (303)
T ss_pred CCCHHHHhhhh------CCeEEECCCCCCC-c----ccceecC--CcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeC
Confidence 4332100 000 0000000000000 0 0001111 12348899999999999999999989999999999
Q ss_pred cccc
Q 002585 680 FVRG 683 (904)
Q Consensus 680 ~a~~ 683 (904)
+...
T Consensus 163 ~~E~ 166 (303)
T cd06592 163 AGEA 166 (303)
T ss_pred CCCc
Confidence 8764
No 58
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.50 E-value=0.015 Score=65.88 Aligned_cols=144 Identities=17% Similarity=0.181 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHHHcCC--CEEEeCCCcCCCC-----CCCCCcc------cC--CCcC--CCCCCHHHHHHHHHHHHHcC
Q 002585 525 WYMELKEKATELSSLGF--SVIWLPPPTESVS-----PEGYMPR------DL--YNLS--SRYGNIDELKDVVNKFHDVG 587 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGV--naI~L~PIfes~s-----~hGYd~~------Dy--~~ID--p~lGt~edlk~LV~aAH~~G 587 (904)
+-+.+.+.++.+++.|| ++|+|=+-+.... +..|... .| +..| .+|- +.++||+++|++|
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FP---dp~~mi~~Lh~~G 98 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWP---NPKGMIDELHEQG 98 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCC---CHHHHHHHHHHCC
Confidence 57889999999999886 7888864221110 1112110 00 0111 1222 6899999999999
Q ss_pred CEEEEEeecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCC--CCCCC-C---CCCCCCCCCCccCCCCHHHHHHHH
Q 002585 588 MKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHF--QGRGN-K---SSGDNFHAAPNIDHSQDFVRKDIK 661 (904)
Q Consensus 588 IkVILD~V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f--~~~~~-~---~~~~~~~~lpdlN~~np~Vr~~i~ 661 (904)
+||++=+.+ ++..+.......+..|.. .... ..| ...+. + ..|.+ ...-+|+.||++++...
T Consensus 99 ~kv~l~v~P-~i~~~~~~~~~~~~~~~~-------~~~~--g~~vk~~~G~~~~~~~~W~g--~~~~~Dftnp~a~~Ww~ 166 (340)
T cd06597 99 VKVLLWQIP-IIKLRPHPHGQADNDEDY-------AVAQ--NYLVQRGVGKPYRIPGQWFP--DSLMLDFTNPEAAQWWM 166 (340)
T ss_pred CEEEEEecC-ccccccccccccchhHHH-------HHHC--CEEEEcCCCCccccccccCC--CceeecCCCHHHHHHHH
Confidence 999985444 222111000000000000 0000 000 00111 0 01111 22348899999999999
Q ss_pred HHHHHHHhccCccEEEeccccc
Q 002585 662 EWLCWLRNEIGYDGWRLDFVRG 683 (904)
Q Consensus 662 ~~l~~Wi~e~GIDGfRlD~a~~ 683 (904)
+.++.+++++|||||.+|+...
T Consensus 167 ~~~~~~~~~~Gidg~w~D~~E~ 188 (340)
T cd06597 167 EKRRYLVDELGIDGFKTDGGEH 188 (340)
T ss_pred HHHHHHHHhcCCcEEEecCCCc
Confidence 9999998789999999998854
No 59
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=96.45 E-value=0.027 Score=62.80 Aligned_cols=141 Identities=16% Similarity=0.080 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHHHcC--CCEEEeCCCcCCCCCCCCCcccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 002585 524 RWYMELKEKATELSSLG--FSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~LG--VnaI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~ 600 (904)
.+-+.+.+.++.+++.| +++|+|=.=+.. +|.-.| +..|+ +|.. .++||+++|++||+|++-+.+ +++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~----~~~~~~-f~~d~~~FPd---~~~~i~~l~~~G~~~~~~~~P-~i~ 91 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMK----EFQWCD-FEFDPDRFPD---PEGMLSRLKEKGFKVCLWINP-YIA 91 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEeccccc----CCccee-eEECcccCCC---HHHHHHHHHHCCCeEEEEecC-CCC
Confidence 46778999999999999 667887653321 122122 45553 6654 689999999999999999875 555
Q ss_pred ccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEecc
Q 002585 601 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 680 (904)
Q Consensus 601 ~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~ 680 (904)
.+++. |..... ..|.-.. .+...+. ...|.+ ..--+|+.||++++++.+.++.++ +.|||||-+|.
T Consensus 92 ~~~~~----~~e~~~-~g~~v~~--~~g~~~~----~~~w~g--~~~~~Dftnp~a~~w~~~~~~~~~-~~Gid~~~~D~ 157 (308)
T cd06593 92 QKSPL----FKEAAE-KGYLVKK--PDGSVWQ----WDLWQP--GMGIIDFTNPDACKWYKDKLKPLL-DMGVDCFKTDF 157 (308)
T ss_pred CCchh----HHHHHH-CCeEEEC--CCCCeee----ecccCC--CcccccCCCHHHHHHHHHHHHHHH-HhCCcEEecCC
Confidence 44321 000000 0010000 0000000 001111 123478999999999999999988 79999999999
Q ss_pred ccccccc
Q 002585 681 VRGFWGG 687 (904)
Q Consensus 681 a~~~~~~ 687 (904)
...++.+
T Consensus 158 ~e~~p~~ 164 (308)
T cd06593 158 GERIPTD 164 (308)
T ss_pred CCCCCcc
Confidence 8766543
No 60
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=96.18 E-value=0.063 Score=61.94 Aligned_cols=138 Identities=19% Similarity=0.125 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCC-CcCCCCCCCCCcccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 002585 525 WYMELKEKATELSSLGFSVIWLPP-PTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~P-Ifes~s~hGYd~~Dy~~IDp-~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~~ 602 (904)
+-+.|.+.++.++++|++.+.|== -|.......-...|+ .+|+ +|- +-|+.|++.+|++||+.=|=+-+--++.+
T Consensus 56 ~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW-~~~~~kFP--~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~ 132 (394)
T PF02065_consen 56 TEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDW-EPDPKKFP--NGLKPLADYIHSLGMKFGLWFEPEMVSPD 132 (394)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBE-CBBTTTST--THHHHHHHHHHHTT-EEEEEEETTEEESS
T ss_pred CHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCce-eEChhhhC--CcHHHHHHHHHHCCCeEEEEeccccccch
Confidence 346688888899999999887621 111111110011233 3443 553 35999999999999999999888777766
Q ss_pred CCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEecccc
Q 002585 603 YQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 682 (904)
Q Consensus 603 ~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~ 682 (904)
+.....+ ++|--.. .+..... ....--||..+|+|++++.+.+..+++++|||.+.+|...
T Consensus 133 S~l~~~h-------Pdw~l~~--~~~~~~~----------~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~ 193 (394)
T PF02065_consen 133 SDLYREH-------PDWVLRD--PGRPPTL----------GRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNR 193 (394)
T ss_dssp SCHCCSS-------BGGBTCC--TTSE-EC----------BTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS
T ss_pred hHHHHhC-------ccceeec--CCCCCcC----------cccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 5432222 3442110 0000000 0112238999999999999999988889999999999975
Q ss_pred cc
Q 002585 683 GF 684 (904)
Q Consensus 683 ~~ 684 (904)
.+
T Consensus 194 ~~ 195 (394)
T PF02065_consen 194 DI 195 (394)
T ss_dssp -T
T ss_pred CC
Confidence 43
No 61
>PLN02316 synthase/transferase
Probab=95.50 E-value=0.22 Score=63.55 Aligned_cols=96 Identities=16% Similarity=0.263 Sum_probs=60.0
Q ss_pred CCeEEEEEEecCCCCceEEEEEecC-----CCceEEEeeeeecCCCCCCccCCCCCCCCCCccccccceecccccccc-C
Q 002585 96 EGKMFVRLQKGKDEKNWQLSVGCNI-----PGKWILHWGVSFVGDNGSEWDQPPKKMRPPGSVSIKDYAIETPLKKLA-E 169 (904)
Q Consensus 96 ~~~~~v~v~~~~~~~~~~v~~~t~~-----~~~~~lHWgv~~~~~~~~eW~~pp~~~~P~~s~~~~~~a~~T~~~~~~-~ 169 (904)
++.+.|.=..-+.+...+|.+-.+. ..++++|=|. ..|...+ .-+.+.++. .
T Consensus 140 ~~~~f~~P~~~~a~~~~~v~~n~~~~~L~~~~~v~i~~gf-------N~W~~~~---------------f~~~~~k~~~~ 197 (1036)
T PLN02316 140 GNKLFVYPQVVKPDSDIEVYLNRSLSTLANEPDVLIMGAF-------NGWRWKS---------------FTERLEKTELG 197 (1036)
T ss_pred CCeEEeccccccCCCeeEEEEcCCCCccCCCCceEEEecc-------ccccccc---------------cceeccccccC
Confidence 4444444434455566777766554 4458899777 6776632 112233333 3
Q ss_pred CCceeEEEEeecCCCCceEEEEEEEeCCcchhhhcCCcceeEeCCccc
Q 002585 170 GDVFDQVNIDFDTRSDIAAINFVLKDEETGAWYQHRGRDFKVPLVDYL 217 (904)
Q Consensus 170 ~~~~~~~~i~~~~~~~~~~~~Fvl~~~~~~~W~~~~g~df~v~l~~~~ 217 (904)
|+- -..++.++ +....|.||+.++++ .|=||+|.||+++++...
T Consensus 198 g~w-w~~~v~Vp--~~A~~ldfVf~~g~~-~yDNN~~~Df~~~V~~~~ 241 (1036)
T PLN02316 198 GDW-WSCKLHIP--KEAYKMDFVFFNGQN-VYDNNDHKDFCVEIEGGM 241 (1036)
T ss_pred CCe-EEEEEecC--ccceEEEEEEeCCcc-ccccCCCCceEEEeCCCC
Confidence 411 22455555 445559999988855 899999999999998754
No 62
>PLN02316 synthase/transferase
Probab=95.45 E-value=0.37 Score=61.66 Aligned_cols=74 Identities=19% Similarity=0.266 Sum_probs=49.5
Q ss_pred CCCCeEEEeeeecCCCCCcccCCCCCCCCcceeechhhcccCcccCCCCcceeEEEecCccceeEEEEEeC--Ccccccc
Q 002585 311 LTGDVVVHWGVCRDDSKNWEIPAEPYPPETIVFKNKALRTLLQPKEGGKGCSRLFTVDEEFAGFLFVLKLN--ENTWLKC 388 (904)
Q Consensus 311 ~~~~~vlHWgv~~~~~~~W~~pp~~~~p~~~~~~~~a~~Tpf~~~~~~~~~~~~~~l~~~~~g~~fVl~~~--~~~W~k~ 388 (904)
....|-||||--+ |.-+..+++|-. +...++|......+++...---|=||+-.+ +++|=+|
T Consensus 506 ~~~ev~~~g~~Nr-----Wth~~~~~~~~~-----------m~~~~~g~~~~a~v~vP~da~~mdfvFs~~~~g~~yDn~ 569 (1036)
T PLN02316 506 GKPEVWFRGSFNR-----WTHRLGPLPPQK-----------MVPADNGSHLKATVKVPLDAYMMDFVFSEKEEGGIFDNR 569 (1036)
T ss_pred CCceEEEEccccC-----cCCCCCCCCcee-----------eeecCCCceEEEEEEccccceEEEEEEecCCCCCCcCCC
Confidence 4458899999888 998877776641 222233432234466633333378888664 6788888
Q ss_pred CCcceEEeCCCC
Q 002585 389 MENDFYIPLTSS 400 (904)
Q Consensus 389 ~g~df~i~l~~~ 400 (904)
+|.||++|...+
T Consensus 570 ~~~dyh~~v~g~ 581 (1036)
T PLN02316 570 NGLDYHIPVFGG 581 (1036)
T ss_pred CCcCCcccccCC
Confidence 999999999854
No 63
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=95.43 E-value=0.08 Score=63.45 Aligned_cols=141 Identities=16% Similarity=0.213 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCC-----CC-------CCHHHHHHHHHHHHHcCCEEE
Q 002585 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSS-----RY-------GNIDELKDVVNKFHDVGMKIL 591 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp-----~l-------Gt~edlk~LV~aAH~~GIkVI 591 (904)
.+.....+.|+.|+.+-||.|+.= +|-|.-...+.-+. .+ =..+..|.+|++||+.||+.|
T Consensus 115 ~~~~~~~~~i~~L~~yHIN~~QFY-------DW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam 187 (559)
T PF13199_consen 115 KSAEDIEAEIDQLNRYHINGLQFY-------DWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAM 187 (559)
T ss_dssp GGHHHHHHHHHHHHHTT--EEEET-------S--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEE
T ss_pred CCchhHHHHHHHHHhhCcCeEEEE-------eeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCccee
Confidence 367889999999999999999963 23332222222222 22 225789999999999999999
Q ss_pred EEeecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCC-CCccCCCCHHHHHHHHHHHHHHHhc
Q 002585 592 GDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHA-APNIDHSQDFVRKDIKEWLCWLRNE 670 (904)
Q Consensus 592 LD~V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~-lpdlN~~np~Vr~~i~~~l~~Wi~e 670 (904)
.=..+.-...+. ...|. ...|.-....... .+ ..+.....|.. +-=+|..|+.-|+||++-+...++.
T Consensus 188 ~Ynmiyaa~~~~-~~~gv------~~eW~ly~d~~~~-~~---~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~ 256 (559)
T PF13199_consen 188 AYNMIYAANNNY-EEDGV------SPEWGLYKDDSHS-NQ---DTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQN 256 (559)
T ss_dssp EEEESSEEETT---S--S------S-GGBEEESSSBT-SB----EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHH
T ss_pred hhHhhhccccCc-ccccC------CchhhhhhccCCC-cc---ceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHc
Confidence 865544222221 01111 0223211000000 00 00000011111 2337889999999999999999999
Q ss_pred cCccEEEecccc
Q 002585 671 IGYDGWRLDFVR 682 (904)
Q Consensus 671 ~GIDGfRlD~a~ 682 (904)
+|+|||-+|...
T Consensus 257 ~gFDG~hlDq~G 268 (559)
T PF13199_consen 257 FGFDGWHLDQLG 268 (559)
T ss_dssp HT--EEEEE-S-
T ss_pred cCCceEeeeccC
Confidence 999999999874
No 64
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=95.28 E-value=0.13 Score=57.65 Aligned_cols=138 Identities=13% Similarity=0.032 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHcCC--CEEEeCCCcCCCCCCCCCcccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 002585 526 YMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (904)
Q Consensus 526 l~GI~ekLdYLk~LGV--naI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~~ 602 (904)
=+.+.+.++.+++.|| ++|+|-+=+.......+ .+ +..|+ +|- +.++||+++|++|+||++-+.+ +++.+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~--~~-f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~P-~i~~~ 100 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKR--YV-FNWNKDRFP---DPAAFVAKFHERGIRLAPNIKP-GLLQD 100 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCce--ee-eecCcccCC---CHHHHHHHHHHCCCEEEEEeCC-cccCC
Confidence 4578888889999886 78887532211100000 11 34443 454 5779999999999999995544 34333
Q ss_pred CCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEecccc
Q 002585 603 YQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 682 (904)
Q Consensus 603 ~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~ 682 (904)
++. |..... ..+.-....... .+. ...|.+. ..-+|+.||+.++...+.++..+.+.|||||-+|...
T Consensus 101 ~~~----y~e~~~-~g~~v~~~~g~~-~~~----~~~w~g~--~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 101 HPR----YKELKE-AGAFIKPPDGRE-PSI----GQFWGGV--GSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred CHH----HHHHHH-CCcEEEcCCCCC-cce----ecccCCC--eEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 321 000000 000000000000 000 0011111 1238899999999999988655558999999999775
No 65
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.19 E-value=0.076 Score=48.22 Aligned_cols=66 Identities=23% Similarity=0.506 Sum_probs=36.4
Q ss_pred eEEEeeeeecCCCCCCccCCCCCCCCCCccccccceeccccccccCCCceeEEEEeecCCCCceEEEEEEEeCCcchhhh
Q 002585 124 WILHWGVSFVGDNGSEWDQPPKKMRPPGSVSIKDYAIETPLKKLAEGDVFDQVNIDFDTRSDIAAINFVLKDEETGAWYQ 203 (904)
Q Consensus 124 ~~lHWgv~~~~~~~~eW~~pp~~~~P~~s~~~~~~a~~T~~~~~~~~~~~~~~~i~~~~~~~~~~~~Fvl~~~~~~~W~~ 203 (904)
+.||+|. ..|..+|.- . +.+ .+.+-. +| .-..+|.++ +. -..|+||++++. +.|=+
T Consensus 21 v~~~~G~-------n~W~~~~~~------~--m~~-~~~~~~---~~--~~~~tv~vP-~~-a~~~dfvF~dg~-~~wDN 76 (87)
T PF03423_consen 21 VHLHGGF-------NRWTHVPGF------G--MTK-MCVPDE---GG--WWKATVDVP-ED-AYVMDFVFNDGA-GNWDN 76 (87)
T ss_dssp EEEEETT-------S-B-SSS-E------E---EE-ESS------TT--EEEEEEE---TT-TSEEEEEEE-SS-S-EES
T ss_pred EEEEecC-------CCCCcCCCC------C--cce-eeeeec---CC--EEEEEEEEc-CC-ceEEEEEEcCCC-CcEeC
Confidence 8899998 689766432 1 111 111111 12 244566665 33 447999999994 48999
Q ss_pred cCCcceeEeC
Q 002585 204 HRGRDFKVPL 213 (904)
Q Consensus 204 ~~g~df~v~l 213 (904)
|+|.||++++
T Consensus 77 N~g~nY~~~V 86 (87)
T PF03423_consen 77 NNGANYHFPV 86 (87)
T ss_dssp TTTS-EEEES
T ss_pred CCCccEEEEc
Confidence 9999999985
No 66
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=95.15 E-value=0.14 Score=57.22 Aligned_cols=133 Identities=14% Similarity=0.167 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCC---CCcccCC--CcCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 002585 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEG---YMPRDLY--NLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hG---Yd~~Dy~--~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NH 598 (904)
|+=..+.+.|+.+++-|+|++-+- -..++| |+...-. .+...-....|+++|++.+|++||.+|.=+|.
T Consensus 10 ~~~~~~~~~~~~i~~t~lNavVID----vKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~-- 83 (316)
T PF13200_consen 10 GSPERLDKLLDLIKRTELNAVVID----VKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVV-- 83 (316)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEE----EecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEE--
Confidence 455568888899999999999752 223333 3221111 11111112468999999999999999999875
Q ss_pred ccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEe
Q 002585 599 RCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (904)
Q Consensus 599 t~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRl 678 (904)
-.|......+ ++|.- . ...+ ..|.+..+..=+|..+++||+|+++++.... ..|+|..-|
T Consensus 84 -FkD~~la~~~-------pe~av---~------~~~G--~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa-~~GFdEIqf 143 (316)
T PF13200_consen 84 -FKDPVLAEAH-------PEWAV---K------TKDG--SVWRDNEGEAWVNPYSKEVWDYNIDIAKEAA-KLGFDEIQF 143 (316)
T ss_pred -ecChHHhhhC-------hhhEE---E------CCCC--CcccCCCCCccCCCCCHHHHHHHHHHHHHHH-HcCCCEEEe
Confidence 2222100000 12211 0 0000 1122223333488899999999999999998 899999999
Q ss_pred cccc
Q 002585 679 DFVR 682 (904)
Q Consensus 679 D~a~ 682 (904)
|-+.
T Consensus 144 DYIR 147 (316)
T PF13200_consen 144 DYIR 147 (316)
T ss_pred eeee
Confidence 9885
No 67
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=94.96 E-value=0.45 Score=61.86 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=49.6
Q ss_pred CCCCccCC-----CCHHHHHHHHHHHHHHHhccCccEEEeccccccccchHHHHH---HhcCCC-EEEEeecCCC
Q 002585 644 HAAPNIDH-----SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYL---EATEPY-FAVGEYWDSL 709 (904)
Q Consensus 644 ~~lpdlN~-----~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~~f~~~~~---~~~~p~-~liGE~w~~~ 709 (904)
.+..+|.| .||.+|++|.++.+-.. .=++|||||.++..|...-+.++ ++++|+ ++++|.+.+.
T Consensus 474 GDcVKLRYG~~peDsP~LW~~M~~Y~~~~A--kiF~G~RiDNCHSTPlhVaeylLd~AR~vnPnLyV~AELFTGS 546 (1464)
T TIGR01531 474 GDSVKLRYGNKPEDSPYLWQHMKEYTEMTA--RIFDGVRIDNCHSTPIHVAEYLLDAARKYNPNLYVVAELFTGS 546 (1464)
T ss_pred cceeeeccCCCCcCCHHHHHHHHHHHHHHH--HhhcceeeecccCCcHHHHHHHHHHHhhcCCCeEEEeeecCCc
Confidence 45555655 57999999999998886 57899999999988766544444 456898 7999998763
No 68
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=94.80 E-value=0.047 Score=61.34 Aligned_cols=143 Identities=15% Similarity=0.181 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHHcCC--CEEEeCCCcCCC--CCCCCCc-ccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 002585 525 WYMELKEKATELSSLGF--SVIWLPPPTESV--SPEGYMP-RDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGV--naI~L~PIfes~--s~hGYd~-~Dy~~IDp-~lGt~edlk~LV~aAH~~GIkVILD~V~NH 598 (904)
+-+.+.+.++.+++.|| ++|||- ..... ...||.. .+ +..|+ +|- +.++||+++|++|++||+-+. .+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~FP---dp~~mi~~Lh~~G~~~~~~i~-P~ 94 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERYP---GLDELIEELKARGIRVLTYIN-PY 94 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhCC---CHHHHHHHHHHCCCEEEEEec-Cc
Confidence 78899999999999876 678875 32100 1112211 11 34454 443 478999999999999999554 45
Q ss_pred ccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEe
Q 002585 599 RCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (904)
Q Consensus 599 t~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRl 678 (904)
+..++... |..-.. ..+.- ...+...+. ...|.+ ...-+|+.||++|+...+.++..+.+.|||||-+
T Consensus 95 v~~~~~~~---y~~~~~-~g~~v--k~~~g~~~~----~~~w~g--~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~ 162 (317)
T cd06594 95 LADDGPLY---YEEAKD-AGYLV--KDADGSPYL----VDFGEF--DCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMA 162 (317)
T ss_pred eecCCchh---HHHHHH-CCeEE--ECCCCCeee----eccCCC--CceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEe
Confidence 54433210 000000 00000 000000000 011111 1234889999999999998887755899999999
Q ss_pred ccccccc
Q 002585 679 DFVRGFW 685 (904)
Q Consensus 679 D~a~~~~ 685 (904)
|+...++
T Consensus 163 D~~E~~p 169 (317)
T cd06594 163 DFGEYLP 169 (317)
T ss_pred cCCCCCC
Confidence 9875443
No 69
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=94.47 E-value=0.25 Score=60.57 Aligned_cols=129 Identities=11% Similarity=0.056 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCC----CCcccCCCcCCCCCCHHHHHH-HHHHHHHcCCEEEEEeeccccc
Q 002585 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEG----YMPRDLYNLSSRYGNIDELKD-VVNKFHDVGMKILGDVVLNHRC 600 (904)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s~hG----Yd~~Dy~~IDp~lGt~edlk~-LV~aAH~~GIkVILD~V~NHt~ 600 (904)
-+.+...|+.|+++|+|+|||--+.+..++.- |-|.++.-+ -.+-|-. .-+-+|++|++|..=+.+--.+
T Consensus 333 ~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~-----r~d~f~~~aw~l~~r~~v~v~AWmp~~~~~ 407 (671)
T PRK14582 333 DRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPM-----RADLFNRVAWQLRTRAGVNVYAWMPVLSFD 407 (671)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCcccccc-----ccCCcCHHHHHHHHhhCCEEEEeccceeec
Confidence 57799999999999999999987766554333 333333222 1222222 1223999999998776553322
Q ss_pred ccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEecc
Q 002585 601 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 680 (904)
Q Consensus 601 ~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~ 680 (904)
-....... ..+.. ...+.-..+. + ...|+..+|+||+.|.++...+.+.+.|||.-||-
T Consensus 408 ~~~~~~~~--------~~~~~----~~~~~~~~~~-------~--~~rl~P~~pe~r~~i~~i~~dla~~~~~dGilf~D 466 (671)
T PRK14582 408 LDPTLPRV--------KRLDT----GEGKAQIHPE-------Q--YRRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFHD 466 (671)
T ss_pred cCCCcchh--------hhccc----cCCccccCCC-------C--CcCCCCCCHHHHHHHHHHHHHHHHhCCCceEEecc
Confidence 11000000 00000 0000000000 0 12288899999999999999999888999999963
No 70
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=93.35 E-value=0.2 Score=56.27 Aligned_cols=137 Identities=16% Similarity=0.160 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHHHc--CCCEEEeCCCcCCCCCCCCCcccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 002585 524 RWYMELKEKATELSSL--GFSVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~L--GVnaI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~ 600 (904)
.+-+.+.+.++.+++. -+++|+|=--+ ....++ . -+..|+ +|- +.++||+++|++|+|||+-+. -+++
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~--~~~~~~--~-~f~~d~~~FP---dp~~mi~~L~~~G~kv~~~i~-P~v~ 91 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIPLDVIVQDWFY--WPKQGW--G-EWKFDPERFP---DPKAMVRELHEMNAELMISIW-PTFG 91 (319)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEechh--hcCCCc--e-eEEEChhhCC---CHHHHHHHHHHCCCEEEEEec-CCcC
Confidence 4667788888888876 55777764110 011221 1 234443 454 457899999999999999553 3444
Q ss_pred ccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEecc
Q 002585 601 AHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDF 680 (904)
Q Consensus 601 ~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~ 680 (904)
.++.. |..... ..+. +... .+......|.+ ...-+|+.||+.++...+.++..+.+.|||||-+|.
T Consensus 92 ~~~~~----y~e~~~-~g~~---v~~~----~g~~~~~~w~g--~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~ 157 (319)
T cd06591 92 PETEN----YKEMDE-KGYL---IKTD----RGPRVTMQFGG--NTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDA 157 (319)
T ss_pred CCChh----HHHHHH-CCEE---EEcC----CCCeeeeeCCC--CccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecC
Confidence 33321 000000 0000 0000 00000011111 123488999999998877665444489999999999
Q ss_pred ccc
Q 002585 681 VRG 683 (904)
Q Consensus 681 a~~ 683 (904)
...
T Consensus 158 ~Ep 160 (319)
T cd06591 158 AEP 160 (319)
T ss_pred CCC
Confidence 863
No 71
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=93.11 E-value=0.43 Score=48.63 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 002585 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (904)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NH 598 (904)
-....+.+.+++++||++|.|. ...-...-+.+..++.-.-..+..+-+..+.++|.+.||+|++-+-++.
T Consensus 19 ~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 19 PAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDP 89 (166)
T ss_pred HHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCc
Confidence 5678999999999999999987 1111112233444422222236678899999999999999999887763
No 72
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=93.09 E-value=0.3 Score=55.34 Aligned_cols=133 Identities=16% Similarity=0.199 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHHcCC--CEEEeCCCcCCCCCCCCCcccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 002585 525 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGV--naI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~ 601 (904)
+-+.+.+.++.+++.|| ++|+|-.-+.. +|. .+..|+ +|- +.++|++++|++|+||++=+.+ |+..
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~---~f~~d~~~fP---dp~~m~~~l~~~g~~~~~~~~P-~v~~ 90 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMD----GYR---VFTWDKERFP---DPKELIKELHEQGFKVVTIIDP-GVKV 90 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhC----CCC---ceeeccccCC---CHHHHHHHHHHCCCEEEEEEeC-ceeC
Confidence 56778889999999886 67887543321 222 134454 554 4589999999999999977544 3322
Q ss_pred cCCCCCCCcccCCCC--CCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEec
Q 002585 602 HYQNQNGVWNIFGGR--LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 679 (904)
Q Consensus 602 ~~~~~~g~~~~y~g~--~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD 679 (904)
+.. +..|... ..+.- ...+...+. ...|.+.. --+|+.||+.++...+.++..+ +.|||||-+|
T Consensus 91 ~~~-----~~~~~e~~~~g~~v--~~~~g~~~~----~~~w~g~~--~~~Dftnp~a~~ww~~~~~~~~-~~Gvdg~w~D 156 (339)
T cd06604 91 DPG-----YDVYEEGLENDYFV--KDPDGELYI----GRVWPGLS--AFPDFTNPKVREWWGSLYKKFV-DLGVDGIWND 156 (339)
T ss_pred CCC-----ChHHHHHHHCCeEE--ECCCCCEEE----EEecCCCc--cccCCCChHHHHHHHHHHHHHh-hCCCceEeec
Confidence 110 0011000 00000 000000000 01111111 2268999999999999999888 8999999999
Q ss_pred ccc
Q 002585 680 FVR 682 (904)
Q Consensus 680 ~a~ 682 (904)
...
T Consensus 157 ~~E 159 (339)
T cd06604 157 MNE 159 (339)
T ss_pred CCC
Confidence 875
No 73
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=93.02 E-value=0.55 Score=53.30 Aligned_cols=140 Identities=13% Similarity=0.157 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHHcCC--CEEEeCCCcCCCCCCCCCcccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 002585 525 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGV--naI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~ 601 (904)
+-+.+.+.++.+++.|| ++|+|-.-+-. +|. -+..|+ +|-.+ ..++||+++|++|+||++=+.+ |+..
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~---~f~~d~~~FPdp-~~~~mi~~L~~~G~k~~~~i~P-~v~~ 92 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRR---DFTLDPVRFPGL-KMPEFVDELHANGQHYVPILDP-AISA 92 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECccccc----Ccc---ceecccccCCCc-cHHHHHHHHHHCCCEEEEEEeC-cccc
Confidence 45778888888888775 67776432111 111 123332 23222 1189999999999999997543 3332
Q ss_pred cCCCCCCCcccCCCC--CCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEec
Q 002585 602 HYQNQNGVWNIFGGR--LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 679 (904)
Q Consensus 602 ~~~~~~g~~~~y~g~--~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD 679 (904)
+.. ...+..|... ..+. ....+...+. ...|.+.. .-+|+.||++++...+.++.++.+.|||||-+|
T Consensus 93 ~~~--~~~~~~~~e~~~~g~~--v~~~~g~~~~----~~~w~g~~--~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D 162 (339)
T cd06602 93 NEP--TGSYPPYDRGLEMDVF--IKNDDGSPYI----GKVWPGYT--VFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWID 162 (339)
T ss_pred CcC--CCCCHHHHHHHHCCeE--EECCCCCEEE----EEeCCCCC--cCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEec
Confidence 210 0111111000 0000 0000000000 01111122 236899999999999999988877999999999
Q ss_pred cccc
Q 002585 680 FVRG 683 (904)
Q Consensus 680 ~a~~ 683 (904)
....
T Consensus 163 ~~Ep 166 (339)
T cd06602 163 MNEP 166 (339)
T ss_pred CCCC
Confidence 8753
No 74
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=92.89 E-value=0.17 Score=54.79 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=51.1
Q ss_pred CCceeeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCC--CC--CHHHHHHHHH
Q 002585 506 TGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSR--YG--NIDELKDVVN 581 (904)
Q Consensus 506 ~~y~i~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~--lG--t~edlk~LV~ 581 (904)
.|..+..++|... ...+. -+.+-++.||++|+|+|=|.-..+. |. .-+|. +. ..+.|+++|+
T Consensus 4 ~G~~v~~~G~n~~---w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~-----~~-----~~~~~~~~~~~~~~~ld~~v~ 69 (281)
T PF00150_consen 4 NGKPVNWRGFNTH---WYNPS-ITEADFDQLKALGFNTVRIPVGWEA-----YQ-----EPNPGYNYDETYLARLDRIVD 69 (281)
T ss_dssp TSEBEEEEEEEET---TSGGG-SHHHHHHHHHHTTESEEEEEEESTS-----TS-----TTSTTTSBTHHHHHHHHHHHH
T ss_pred CCCeEEeeeeecc---cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHH-----hc-----CCCCCccccHHHHHHHHHHHH
Confidence 4556777777642 11122 5777899999999999987644211 11 11111 22 3578999999
Q ss_pred HHHHcCCEEEEEeecc
Q 002585 582 KFHDVGMKILGDVVLN 597 (904)
Q Consensus 582 aAH~~GIkVILD~V~N 597 (904)
+|+++||+||+|+--.
T Consensus 70 ~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 70 AAQAYGIYVILDLHNA 85 (281)
T ss_dssp HHHHTT-EEEEEEEES
T ss_pred HHHhCCCeEEEEeccC
Confidence 9999999999987654
No 75
>PRK10426 alpha-glucosidase; Provisional
Probab=92.89 E-value=0.49 Score=58.11 Aligned_cols=132 Identities=18% Similarity=0.249 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHcC--CCEEEeCCCcCCCCCCCCCcccC-------CCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEee
Q 002585 526 YMELKEKATELSSLG--FSVIWLPPPTESVSPEGYMPRDL-------YNLSS-RYGNIDELKDVVNKFHDVGMKILGDVV 595 (904)
Q Consensus 526 l~GI~ekLdYLk~LG--VnaI~L~PIfes~s~hGYd~~Dy-------~~IDp-~lGt~edlk~LV~aAH~~GIkVILD~V 595 (904)
-+.+.+.++.+++.| +++|||- -. +++...+| +..|+ +|- +.++||+++|++|+|||+-+-
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~ld-dw-----~~~~~~~~g~~~~~~~~~d~~~FP---dp~~mi~~L~~~G~k~v~~i~ 290 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWAQ-DW-----SGIRMTSFGKRLMWNWKWDSERYP---QLDSRIKQLNEEGIQFLGYIN 290 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEe-cc-----cccccccccccccccceEChhhCC---CHHHHHHHHHHCCCEEEEEEc
Confidence 467888889999988 5889984 11 11111111 12232 232 578899999999999999865
Q ss_pred cccccccCCC-----CCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhc
Q 002585 596 LNHRCAHYQN-----QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNE 670 (904)
Q Consensus 596 ~NHt~~~~~~-----~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e 670 (904)
+ |+..++.. .+|.+.. ..+...|.. ..|.+.. .-+|+.||++|+...+.++..+.+
T Consensus 291 P-~v~~~~~~y~e~~~~gy~vk------------~~~g~~~~~----~~~~~~~--~~~Dftnp~ar~Ww~~~~~~~~~~ 351 (635)
T PRK10426 291 P-YLASDGDLCEEAAEKGYLAK------------DADGGDYLV----EFGEFYA--GVVDLTNPEAYEWFKEVIKKNMIG 351 (635)
T ss_pred C-ccCCCCHHHHHHHHCCcEEE------------CCCCCEEEe----EecCCCc--eeecCCCHHHHHHHHHHHHHHHhh
Confidence 4 23322210 1111100 000000000 0111111 237899999999999988655558
Q ss_pred cCccEEEeccccccc
Q 002585 671 IGYDGWRLDFVRGFW 685 (904)
Q Consensus 671 ~GIDGfRlD~a~~~~ 685 (904)
.|||||-+|+...++
T Consensus 352 ~Gvdg~w~D~~E~~p 366 (635)
T PRK10426 352 LGCSGWMADFGEYLP 366 (635)
T ss_pred cCCCEEeeeCCCCCC
Confidence 999999999865433
No 76
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=92.45 E-value=0.52 Score=55.20 Aligned_cols=134 Identities=25% Similarity=0.327 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHcCC--CEEEeCCCcCCCCCCCCCcccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 002585 525 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGV--naI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~ 601 (904)
+-..+.+-++.+++.|| ++|+|-.-+.. +|. | +..|+ +|- ++++|++.+|++|++|++-+.+ ++..
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~----~~~--~-f~~d~~~FP---d~~~~~~~l~~~G~~~~~~~~P-~v~~ 109 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD----GYG--D-FTWDPERFP---DPKQMIDELHDQGIKVVLWVHP-FVSN 109 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB----TTB--T-T-B-TTTTT---THHHHHHHHHHTT-EEEEEEES-EEET
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc----ccc--c-ccccccccc---chHHHHHhHhhCCcEEEEEeec-ccCC
Confidence 46778888888888776 55665443222 111 2 34443 333 7899999999999999998887 3443
Q ss_pred cCCCCCCCcccCCCC--CCCCCCCccCCCCCCCCCCC-C--CCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEE
Q 002585 602 HYQNQNGVWNIFGGR--LNWDDRAVVADDPHFQGRGN-K--SSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 676 (904)
Q Consensus 602 ~~~~~~g~~~~y~g~--~~W~~~~~~~~~~~f~~~~~-~--~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGf 676 (904)
++. .+..|... ..+. +. +..+. + ..|.+. ..-+|+.||++++.+.+.++.++..+|||||
T Consensus 110 ~~~----~~~~~~~~~~~~~~---v~------~~~g~~~~~~~w~g~--~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~ 174 (441)
T PF01055_consen 110 DSP----DYENYDEAKEKGYL---VK------NPDGSPYIGRVWPGK--GGFIDFTNPEARDWWKEQLKELLDDYGVDGW 174 (441)
T ss_dssp TTT----B-HHHHHHHHTT-B---EB------CTTSSB-EEEETTEE--EEEB-TTSHHHHHHHHHHHHHHHTTST-SEE
T ss_pred CCC----cchhhhhHhhcCce---ee------cccCCcccccccCCc--ccccCCCChhHHHHHHHHHHHHHhccCCceE
Confidence 332 01111000 0000 00 00010 0 001111 3347889999999999999999977799999
Q ss_pred Eecccccc
Q 002585 677 RLDFVRGF 684 (904)
Q Consensus 677 RlD~a~~~ 684 (904)
-+|.....
T Consensus 175 w~D~~E~~ 182 (441)
T PF01055_consen 175 WLDFGEPS 182 (441)
T ss_dssp EEESTTTB
T ss_pred EeecCCcc
Confidence 99996544
No 77
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=92.06 E-value=0.72 Score=55.20 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecc
Q 002585 574 DELKDVVNKFHDVGMKILGDVVLN 597 (904)
Q Consensus 574 edlk~LV~aAH~~GIkVILD~V~N 597 (904)
++++++-+.|+.+||+||.|+.+-
T Consensus 212 ~Q~~~l~~yA~~~~I~L~gDlpi~ 235 (513)
T TIGR00217 212 SQFQALKRYANDMGIGLYGDLPVF 235 (513)
T ss_pred HHHHHHHHHHhcCCcEEEEeCcce
Confidence 468888889999999999999884
No 78
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=92.03 E-value=0.48 Score=53.24 Aligned_cols=135 Identities=18% Similarity=0.146 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHHcCC--CEEEeCCCcCCCCCCCCCcccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 002585 524 RWYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~LGV--naI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~ 600 (904)
.+-+.+.+.++.+++.|| ++|+|-.=+- .+|. .+..|+ +|- +.++||+++|++|+||++=+.+ +++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~----~~~~---~f~~d~~~FP---dp~~~i~~l~~~g~k~~~~~~P-~i~ 89 (317)
T cd06600 21 YPQDKVVEVVDIMQKEGFPYDVVFLDIHYM----DSYR---LFTWDPYRFP---EPKKLIDELHKRNVKLVTIVDP-GIR 89 (317)
T ss_pred CCHHHHHHHHHHHHHcCCCcceEEEChhhh----CCCC---ceeechhcCC---CHHHHHHHHHHCCCEEEEEeec-ccc
Confidence 357788888888888775 6777753111 1221 133343 343 5679999999999999996544 333
Q ss_pred ccCCCCCCCcccCC-CC-CCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEe
Q 002585 601 AHYQNQNGVWNIFG-GR-LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (904)
Q Consensus 601 ~~~~~~~g~~~~y~-g~-~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRl 678 (904)
.+.. +..|. +. ..+.- ...+...+. ...|.+. ..-+|+.||+.++...+.++..+.+.|||||-+
T Consensus 90 ~~~~-----~~~~~~~~~~~~~v--~~~~g~~~~----~~~w~G~--~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~ 156 (317)
T cd06600 90 VDQN-----YSPFLSGMDKGKFC--EIESGELFV----GKMWPGT--TVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWL 156 (317)
T ss_pred CCCC-----ChHHHHHHHCCEEE--ECCCCCeEE----EeecCCC--ccccCCCChHHHHHHHHHHHHHhhcCCCceEEe
Confidence 2211 11110 00 00000 000000000 0111111 123789999999999999988877899999999
Q ss_pred cccc
Q 002585 679 DFVR 682 (904)
Q Consensus 679 D~a~ 682 (904)
|...
T Consensus 157 D~~E 160 (317)
T cd06600 157 DMNE 160 (317)
T ss_pred eCCC
Confidence 9875
No 79
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=91.89 E-value=3.1 Score=51.63 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=47.6
Q ss_pred CCCCCccCC-----CCHHHHHHHHHHHHHHHhccCccEEEeccccccccch---HHHHHHhcCCC-EEEEeecCCCCcc
Q 002585 643 FHAAPNIDH-----SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGY---VKDYLEATEPY-FAVGEYWDSLSYT 712 (904)
Q Consensus 643 ~~~lpdlN~-----~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~~f---~~~~~~~~~p~-~liGE~w~~~~~l 712 (904)
|.+..+|+| .+|.+|++|.+++.-=. .=+||+|+|.++..|--. +-+..++++|+ |+++|.+.+..++
T Consensus 495 WGDsVKLryG~kpeDsPyLWq~M~kY~e~tA--riFdG~RlDNcHsTPlHVaEylLd~ARk~nPnlYVvAELFtgSe~~ 571 (1521)
T KOG3625|consen 495 WGDSVKLRYGNKPEDSPYLWQHMKKYTEITA--RIFDGVRLDNCHSTPLHVAEYLLDAARKLNPNLYVVAELFTGSEDL 571 (1521)
T ss_pred ecceeeeccCCCcccChHHHHHHHHHHHHHH--HHhcceeeccCCCCchhHHHHHHHHHHhcCCCeEEEeeeccCCccc
Confidence 344556666 45889999988776543 457999999999766433 22334566898 8999999875443
No 80
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=91.59 E-value=0.42 Score=57.05 Aligned_cols=179 Identities=16% Similarity=0.211 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecccccccCC--CCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCC
Q 002585 574 DELKDVVNKFHDVGMKILGDVVLNHRCAHYQ--NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH 651 (904)
Q Consensus 574 edlk~LV~aAH~~GIkVILD~V~NHt~~~~~--~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~ 651 (904)
++++++.+.|+++||+||.|+.+- ++.++. |.+... |. .+..-. .+. ..|+..|+. .++|-.|+
T Consensus 192 ~Q~~~~~~~A~~~gI~L~gDlpig-v~~dsaDvW~~~~l--F~--~~~~aG-aPP--D~fs~~GQ~------WG~P~y~w 257 (496)
T PF02446_consen 192 KQWKAAKEYAREMGIGLIGDLPIG-VSPDSADVWANPEL--FL--LDASAG-APP--DYFSPTGQN------WGNPPYNW 257 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEESS---SSSHHHHH-GGG--B---B-EEEE-E-S--SSSSSS-EE------EEEE-B-H
T ss_pred HHHHHHHHHHHHCCCEEEEeccce-ECCCcHHHHhCHHH--Hh--CcCeeC-CCC--CCCCccccc------CCCCCcCH
Confidence 478999999999999999999874 222221 111110 10 000000 000 123333322 23454543
Q ss_pred CCHHH--HHHHHHHHHHHHhccCccEEEecccccc------cc----------------chHHHHHHhcC-CCEEEEeec
Q 002585 652 SQDFV--RKDIKEWLCWLRNEIGYDGWRLDFVRGF------WG----------------GYVKDYLEATE-PYFAVGEYW 706 (904)
Q Consensus 652 ~np~V--r~~i~~~l~~Wi~e~GIDGfRlD~a~~~------~~----------------~f~~~~~~~~~-p~~liGE~w 706 (904)
..-.- -+.+++-+++-+ ..+|+.|||.+.++ |. +++..+..+.. ...+|||..
T Consensus 258 ~~l~~~gy~ww~~rl~~~~--~~~d~lRIDH~~Gf~r~W~IP~~~~~a~~G~~~~~p~~~ll~~l~~e~~r~~~vigEDL 335 (496)
T PF02446_consen 258 DALKEDGYRWWIDRLRANM--RLFDALRIDHFRGFFRYWWIPAGGETAIDGAWVRYPGEDLLAILALESGRDCLVIGEDL 335 (496)
T ss_dssp HHHHHTTTHHHHHHHHHHH--CC-SEEEEETGGGGTEEEEEETT-SSSTT-EEEE--HHHHHHHHHHHHS-S-EEEE--T
T ss_pred HHHHHcCCHHHHHHHHHHH--HhCCchHHHHHHHHHheeEecCCCCCCCCceeecchHHHHHHHHHHHcCCCCcEEEeec
Confidence 21000 123444555554 57889999998643 21 24455455555 557999976
Q ss_pred CCCCcccccCCCCchHHHHHHHHHHhhcCCCcccccchhhHHHHHhhhchhhhhhhhhcCCCCCCcCCCCCcceeecccC
Q 002585 707 DSLSYTYGEMDHNQDAHRQRIIDWINAASGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENH 786 (904)
Q Consensus 707 ~~~~~l~g~mny~~~~~~~~i~~~l~~~~g~~~~fdf~l~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~P~~~vnflenH 786 (904)
..- ...+..-+...+ +.-..++.-... .-.........||..+|.++++|
T Consensus 336 G~v--------------p~~v~~~l~~~g-------i~g~~Vl~f~~~---------~~~~~~~~P~~~~~~sva~~~TH 385 (496)
T PF02446_consen 336 GTV--------------PPEVRELLAELG-------IPGMRVLQFEFD---------EDDGNFYLPHNYPENSVAYTGTH 385 (496)
T ss_dssp SS----------------HHHHHHHHHTT---------EEEEGGGSSS---------SSTT-TTSGGGSTSSEEEESS-T
T ss_pred CCC--------------cHHHHHHHHHcC-------CCceEEEEecCC---------CCCCCCCCcccCCCccEeeCCCC
Confidence 542 233333333221 111001100000 00011123345788999999999
Q ss_pred CCCCccCCCCCC
Q 002585 787 DTGSTQGHWRFP 798 (904)
Q Consensus 787 Dt~R~~t~~~~~ 798 (904)
|++.+..-|...
T Consensus 386 D~~Tl~gww~~~ 397 (496)
T PF02446_consen 386 DNPTLRGWWEGE 397 (496)
T ss_dssp TS--HHHHHHCS
T ss_pred CCHHHHHHHhCC
Confidence 999877665543
No 81
>PRK10658 putative alpha-glucosidase; Provisional
Probab=90.65 E-value=0.63 Score=57.44 Aligned_cols=131 Identities=12% Similarity=0.088 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHcCC--CEEEeCCCcCCCCCCCCCcccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 002585 526 YMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (904)
Q Consensus 526 l~GI~ekLdYLk~LGV--naI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~~ 602 (904)
=+.+.+-++.+++.|| ++|+|-..+- .+|.-.| +..|+ +|- +.++||+++|++|+||++-+.+ +++.+
T Consensus 282 e~~v~~~~~~~r~~~iP~d~i~lD~~w~----~~~~~~~-f~wd~~~FP---dp~~mi~~L~~~G~k~~~~i~P-~i~~~ 352 (665)
T PRK10658 282 EATVNSFIDGMAERDLPLHVFHFDCFWM----KEFQWCD-FEWDPRTFP---DPEGMLKRLKAKGLKICVWINP-YIAQK 352 (665)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEchhhh----cCCceee-eEEChhhCC---CHHHHHHHHHHCCCEEEEeccC-CcCCC
Confidence 3457777787887776 4566543221 1222122 23342 333 4578999999999999987654 33333
Q ss_pred CCC-----CCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCC-CCCCccCCCCHHHHHHHHHHHHHHHhccCccEE
Q 002585 603 YQN-----QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNF-HAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGW 676 (904)
Q Consensus 603 ~~~-----~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~-~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGf 676 (904)
++. .+|.+.. ...+..+.+..| ....-+|+.||++|+...+.++.++ +.|||||
T Consensus 353 s~~f~e~~~~gy~vk-------------------~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~-d~Gvdgf 412 (665)
T PRK10658 353 SPLFKEGKEKGYLLK-------------------RPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLL-DMGVDCF 412 (665)
T ss_pred chHHHHHHHCCeEEE-------------------CCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHH-hcCCcEE
Confidence 321 1111100 001111111111 1223488999999999999999988 8999999
Q ss_pred Eeccccccc
Q 002585 677 RLDFVRGFW 685 (904)
Q Consensus 677 RlD~a~~~~ 685 (904)
-.|....++
T Consensus 413 w~D~gE~~p 421 (665)
T PRK10658 413 KTDFGERIP 421 (665)
T ss_pred EecCCceee
Confidence 999765443
No 82
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=90.49 E-value=0.8 Score=51.77 Aligned_cols=57 Identities=19% Similarity=0.291 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt 599 (904)
.+.++.||+.|+|.|=|=-.. .+ |+ .-+-+.+...+|.++|++.||+|+||+=+.++
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv-~P----~~--------~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~ 83 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWV-NP----YD--------GGYNDLEDVIALAKRAKAAGMKVLLDFHYSDF 83 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-S-S-----TT--------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS
T ss_pred CCHHHHHHhcCCCeEEEEecc-CC----cc--------cccCCHHHHHHHHHHHHHCCCeEEEeecccCC
Confidence 567889999999998653211 11 11 44557889999999999999999999976544
No 83
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=90.49 E-value=0.59 Score=53.38 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCC-CCHHHHHHHHHHHHHcCCEEEEEeecc
Q 002585 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRY-GNIDELKDVVNKFHDVGMKILGDVVLN 597 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~l-Gt~edlk~LV~aAH~~GIkVILD~V~N 597 (904)
++....+-|.-.+++|++.|+.+= ..++..- ...+.|++|++.||++||+||+|+-..
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL---------------~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSL---------------HIPEDDPEDYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE------------------------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred CHHHHHHHHHHHHHCCCCEEECCC---------------CcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 688889999999999999998651 1111111 125789999999999999999999664
No 84
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=90.35 E-value=0.71 Score=51.89 Aligned_cols=133 Identities=11% Similarity=0.014 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHHcCC--CEEEeCCCcCCC-C-CCCCCcccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 002585 525 WYMELKEKATELSSLGF--SVIWLPPPTESV-S-PEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGV--naI~L~PIfes~-s-~hGYd~~Dy~~IDp-~lGt~edlk~LV~aAH~~GIkVILD~V~NHt 599 (904)
+-+.+.+.++.+++.|| ++|+|-.=+-.. . ...|. | +..|+ +|- +.++||+++|++|+||++-+.+ ++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~--~-f~wd~~~FP---dp~~mi~~L~~~G~k~~~~v~P-~v 94 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG--N-LDWDRKAFP---DPAGMIADLAKKGVKTIVITEP-FV 94 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCcee--e-eEeccccCC---CHHHHHHHHHHcCCcEEEEEcC-cc
Confidence 46778888888888775 677765421110 0 00111 1 33442 454 3578999999999999998753 33
Q ss_pred cccCCC-----CCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCcc
Q 002585 600 CAHYQN-----QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYD 674 (904)
Q Consensus 600 ~~~~~~-----~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GID 674 (904)
..+++. .+|.+- .. ..+...+ ....|.+... -+|+.||+.++...+.++.+. +.|||
T Consensus 95 ~~~~~~y~e~~~~g~l~--------~~---~~~~~~~----~~~~w~g~~~--~~Dftnp~a~~w~~~~~~~~~-~~Gvd 156 (317)
T cd06598 95 LKNSKNWGEAVKAGALL--------KK---DQGGVPT----LFDFWFGNTG--LIDWFDPAAQAWFHDNYKKLI-DQGVT 156 (317)
T ss_pred cCCchhHHHHHhCCCEE--------EE---CCCCCEe----eeeccCCCcc--ccCCCCHHHHHHHHHHHHHhh-hCCcc
Confidence 333321 011100 00 0000000 0011112222 367799999999999998886 89999
Q ss_pred EEEecccc
Q 002585 675 GWRLDFVR 682 (904)
Q Consensus 675 GfRlD~a~ 682 (904)
||-+|...
T Consensus 157 g~w~D~~E 164 (317)
T cd06598 157 GWWGDLGE 164 (317)
T ss_pred EEEecCCC
Confidence 99999875
No 85
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=89.60 E-value=1.1 Score=48.36 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCC
Q 002585 572 NIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH 651 (904)
Q Consensus 572 t~edlk~LV~aAH~~GIkVILD~V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~ 651 (904)
+.+.+++.|+.+|++|+|||+=+--+|.+... -..
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~---------------------------------------------~~~ 83 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGF---------------------------------------------ANN 83 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCc---------------------------------------------ccc
Confidence 46889999999999999999987665544210 001
Q ss_pred CCHHHHHHHHHHHHHHHhccCccEEEeccc
Q 002585 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFV 681 (904)
Q Consensus 652 ~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a 681 (904)
.+++-++.+.+.+..+++++|+||+=||.-
T Consensus 84 ~~~~~~~~fa~~l~~~v~~yglDGiDiD~E 113 (255)
T cd06542 84 LSDAAAKAYAKAIVDTVDKYGLDGVDFDDE 113 (255)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceEEeee
Confidence 234556666666666677999999999974
No 86
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=89.52 E-value=0.58 Score=52.12 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 002585 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~N 597 (904)
+.....++-|+-..+.|++.|..+=.......+ +-..-|++|+++||+.||+||+|+-+.
T Consensus 13 ~~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~--------------~~~~~~~ell~~Anklg~~vivDvnPs 72 (360)
T COG3589 13 SPKEKDIAYIDRMHKYGFKRIFTSLLIPEEDAE--------------LYFHRFKELLKEANKLGLRVIVDVNPS 72 (360)
T ss_pred CcchhHHHHHHHHHHcCccceeeecccCCchHH--------------HHHHHHHHHHHHHHhcCcEEEEEcCHH
Confidence 445667888888899999999865332222111 113459999999999999999998763
No 87
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=89.32 E-value=0.86 Score=60.99 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=46.9
Q ss_pred CCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEecccccccc--chHHHHH
Q 002585 637 KSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG--GYVKDYL 693 (904)
Q Consensus 637 ~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~--~f~~~~~ 693 (904)
|--+.+..+|..+..++|+|-+..-..+..|+++=-|||.|+|.++++.. .+++++.
T Consensus 1032 YRRFFdIn~L~~lRvE~~~VF~~tH~li~~L~~~G~vdGlRIDHiDGL~dP~~Yl~rLr 1090 (1693)
T PRK14507 1032 YRRFFDINSLAALRMERPDVFEATHALLFRLIAEGRIDGLRIDHPDGLADPAGYFRRLQ 1090 (1693)
T ss_pred cceeecchhheeeeccCHHHHHHHHHHHHHHHHCCCCCeEEeCCCccccCHHHHHHHHH
Confidence 44445568888889999999999999999999888999999999998754 5666653
No 88
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=89.04 E-value=3.7 Score=46.83 Aligned_cols=125 Identities=12% Similarity=0.082 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcC-------CCCCCHHHHHHHHHHHHHcCCEEEEEe-ec
Q 002585 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-------SRYGNIDELKDVVNKFHDVGMKILGDV-VL 596 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~ID-------p~lGt~edlk~LV~aAH~~GIkVILD~-V~ 596 (904)
....|..-+|.++.+.+|.++|-= .+. ..+++....|=.+- ..|=|.+|+++||+-|.++||.||-.+ ++
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~Hl-tDd-~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~P 93 (348)
T cd06562 16 SVDSIKRTIDAMAYNKLNVLHWHI-TDS-QSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDTP 93 (348)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeE-EcC-CCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccCc
Confidence 377888888999999999998730 000 11222222121111 011289999999999999999999998 66
Q ss_pred ccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhcc
Q 002585 597 NHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEI 671 (904)
Q Consensus 597 NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~ 671 (904)
.|+..-.......-. .....|.. +..-...-.||..+|++.+++.+++..+++-|
T Consensus 94 GH~~a~~~~~p~l~~--~~~~~~~~------------------~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF 148 (348)
T cd06562 94 GHTGSWGQGYPELLT--GCYAVWRK------------------YCPEPPCGQLNPTNPKTYDFLKTLFKEVSELF 148 (348)
T ss_pred hhhHHHHHhChhhhC--CCCccccc------------------cccCCCCccccCCChhHHHHHHHHHHHHHHhc
Confidence 777542110000000 00000100 00001122488999999999999998888544
No 89
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=88.87 E-value=1.6 Score=54.10 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCC--EEEEEeecc
Q 002585 574 DELKDVVNKFHDVGM--KILGDVVLN 597 (904)
Q Consensus 574 edlk~LV~aAH~~GI--kVILD~V~N 597 (904)
++++++-+.|+++|| +||.|+.+-
T Consensus 355 ~Ql~~~~~~A~~~Gm~igL~gDLpvg 380 (695)
T PRK11052 355 SQFAACWQLSQQLGMPIGLYRDLAVG 380 (695)
T ss_pred HHHHHHHHHHHHCCCceeEEEeeece
Confidence 478888999999999 679999873
No 90
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=88.00 E-value=0.86 Score=52.13 Aligned_cols=31 Identities=19% Similarity=0.092 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHHHhccCccEEEecccc
Q 002585 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 682 (904)
Q Consensus 652 ~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~ 682 (904)
.++..|+.+++.+..+++++|+||+-||--.
T Consensus 92 ~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~ 122 (358)
T cd02875 92 SNPTYRTQWIQQKVELAKSQFMDGINIDIEQ 122 (358)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEcccC
Confidence 4688899888877777789999999999753
No 91
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=86.93 E-value=1.3 Score=50.84 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCC--HHHHHHHHHHHHHcCCEEEEEeecccccccCC
Q 002585 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN--IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQ 604 (904)
Q Consensus 527 ~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt--~edlk~LV~aAH~~GIkVILD~V~NHt~~~~~ 604 (904)
..+.+-|+-+|++|||+|-|..+.- ..+.|.=|. -+.|..+|+.|+++||+|||-.. .+..
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W------------~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~-~~~~---- 72 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSW------------SWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTP-TAAP---- 72 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEH------------HHH-SBTTB---HHHHHHHHHHHCTT-EEEEEEC-TTTS----
T ss_pred HHHHHHHHHHHHcCCCEEEEEEech------------hhccCCCCeeecHHHHHHHHHHHhccCeEEEEec-cccc----
Confidence 3577888999999999999877642 222222222 24588999999999999999665 2221
Q ss_pred CCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhcc----CccEEEecc
Q 002585 605 NQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEI----GYDGWRLDF 680 (904)
Q Consensus 605 ~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~----GIDGfRlD~ 680 (904)
+.|-....+. ....+..+.. .........+..+|.+|+++...+....+.| .|-||-+|.
T Consensus 73 ------------P~Wl~~~~Pe-~~~~~~~g~~---~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~N 136 (374)
T PF02449_consen 73 ------------PAWLYDKYPE-ILPVDADGRR---RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDN 136 (374)
T ss_dssp -------------HHHHCCSGC-CC-B-TTTSB---EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECC
T ss_pred ------------ccchhhhccc-ccccCCCCCc---CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEecc
Confidence 1121000000 0000001100 0111223356788999999888776665544 477898886
Q ss_pred cc
Q 002585 681 VR 682 (904)
Q Consensus 681 a~ 682 (904)
-.
T Consensus 137 E~ 138 (374)
T PF02449_consen 137 EP 138 (374)
T ss_dssp ST
T ss_pred cc
Confidence 53
No 92
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=85.77 E-value=8.4 Score=43.66 Aligned_cols=124 Identities=12% Similarity=0.090 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcC------------CCCCCHHHHHHHHHHHHHcCCEEEE
Q 002585 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS------------SRYGNIDELKDVVNKFHDVGMKILG 592 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~ID------------p~lGt~edlk~LV~aAH~~GIkVIL 592 (904)
+.+.|.+-||.++..++|.++|--. +. ..+++....|=.+- ..+=|.+|+++||+-|.+|||.||-
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLt-D~-~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIP 93 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLT-DD-QGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVP 93 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEee-cC-CcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 4778888889999999999988432 10 11222222221111 1122799999999999999999999
Q ss_pred Ee-ecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhc
Q 002585 593 DV-VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNE 670 (904)
Q Consensus 593 D~-V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e 670 (904)
.+ ++.|+..--. .|..+.. ..+. ...+. ..-.....||..+|++.+++.+++...++-
T Consensus 94 EiD~PGH~~a~~~----~~p~l~~-~~~~-------~~~~~--------~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~ 152 (329)
T cd06568 94 EIDMPGHTNAALA----AYPELNC-DGKA-------KPLYT--------GIEVGFSSLDVDKPTTYEFVDDVFRELAAL 152 (329)
T ss_pred ecCCcHHHHHHHH----hChhhcc-CCCC-------Ccccc--------ccCCCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 97 5667653110 0000000 0000 00000 000112358999999999999999888743
No 93
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=85.51 E-value=5.8 Score=44.74 Aligned_cols=118 Identities=17% Similarity=0.129 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccC--------------------CCc--CCCCCCHHHHHHHHHH
Q 002585 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDL--------------------YNL--SSRYGNIDELKDVVNK 582 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy--------------------~~I--Dp~lGt~edlk~LV~a 582 (904)
....|.+-|+.++.+++|.++|-=- + ++++....| ... ...+=|.+|+|+||+-
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHlt-D---~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~y 90 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLN-D---NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAY 90 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeec-C---CcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHH
Confidence 4778888889999999999987200 0 111111111 111 1122289999999999
Q ss_pred HHHcCCEEEEEe-ecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHH
Q 002585 583 FHDVGMKILGDV-VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIK 661 (904)
Q Consensus 583 AH~~GIkVILD~-V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~ 661 (904)
|.++||.||-.+ ++.|+..--.. ++.... .+. ......-.||..+|++.+++.
T Consensus 91 A~~rgI~vIPEID~PGH~~a~~~~--------------~pel~~--------~~~----~~~~~~~~l~~~~~~t~~f~~ 144 (326)
T cd06564 91 AKDRGVNIIPEIDSPGHSLAFTKA--------------MPELGL--------KNP----FSKYDKDTLDISNPEAVKFVK 144 (326)
T ss_pred HHHcCCeEeccCCCcHHHHHHHHh--------------hHHhcC--------CCc----ccCCCcccccCCCHHHHHHHH
Confidence 999999999887 66777532100 000000 000 001122347889999999999
Q ss_pred HHHHHHHhccC
Q 002585 662 EWLCWLRNEIG 672 (904)
Q Consensus 662 ~~l~~Wi~e~G 672 (904)
+++...++-|.
T Consensus 145 ~l~~E~~~~f~ 155 (326)
T cd06564 145 ALFDEYLDGFN 155 (326)
T ss_pred HHHHHHHHhcC
Confidence 99998885555
No 94
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=84.67 E-value=4 Score=45.60 Aligned_cols=120 Identities=9% Similarity=0.098 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcC-----------CCCCCHHHHHHHHHHHHHcCCEEEEE
Q 002585 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-----------SRYGNIDELKDVVNKFHDVGMKILGD 593 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~ID-----------p~lGt~edlk~LV~aAH~~GIkVILD 593 (904)
+...|.+-+|.++.+++|.++|-=- +. ..+++....|=.+- ..+=|.+|+++||+-|.++||.||-.
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~-D~-~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLT-DD-QAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeee-cC-CCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEe
Confidence 4777888899999999999977411 00 11222222221111 11337899999999999999999999
Q ss_pred e-ecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHh
Q 002585 594 V-VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRN 669 (904)
Q Consensus 594 ~-V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~ 669 (904)
+ ++.|+..--.......+ .+ +.+.. . ....-.||..+|++.+++.+++..+++
T Consensus 92 iD~PGH~~a~~~~~p~l~~--------------~~---~~~~~-----~-~~~~~~l~~~~~~t~~fl~~l~~e~~~ 145 (303)
T cd02742 92 IDMPGHSTAFVKSFPKLLT--------------EC---YAGLK-----L-RDVFDPLDPTLPKGYDFLDDLFGEIAE 145 (303)
T ss_pred ccchHHHHHHHHhCHHhcc--------------Cc---cccCC-----C-CCCCCccCCCCccHHHHHHHHHHHHHH
Confidence 8 67787642110000000 00 00000 0 001124888999999999999998884
No 95
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=84.30 E-value=2 Score=54.86 Aligned_cols=133 Identities=16% Similarity=0.161 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHHcCC--CEEEeCCCcCCCCCCCCCcccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 002585 525 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGV--naI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~ 601 (904)
+-+.+.+-++.+++.|| ++|||--= .-.+|.. |..|+ +|- +.++||+++|++|+|+|.=+.+ ++..
T Consensus 199 sq~eV~eva~~fre~~IP~DvIwlDid----Ym~g~~~---FTwD~~rFP---dP~~mv~~Lh~~G~kvv~iidP-gI~~ 267 (978)
T PLN02763 199 SAKRVAEIARTFREKKIPCDVVWMDID----YMDGFRC---FTFDKERFP---DPKGLADDLHSIGFKAIWMLDP-GIKA 267 (978)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEehh----hhcCCCc---eeECcccCC---CHHHHHHHHHHCCCEEEEEEcC-CCcc
Confidence 45778888888888775 66877521 1123332 45554 554 4589999999999999764422 2221
Q ss_pred cCCCCCCCcccCCCC--CCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEec
Q 002585 602 HYQNQNGVWNIFGGR--LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 679 (904)
Q Consensus 602 ~~~~~~g~~~~y~g~--~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD 679 (904)
+..|..|+.. .+.. ....+...|.+ ..|.+.... .|+.||++|++..+.++.++ +.|||||=+|
T Consensus 268 -----d~gY~~y~eg~~~~~f--vk~~~G~~y~G----~vWpG~~~f--pDFTnP~ar~WW~~~~k~l~-d~GVDG~W~D 333 (978)
T PLN02763 268 -----EEGYFVYDSGCENDVW--IQTADGKPFVG----EVWPGPCVF--PDFTNKKTRSWWANLVKDFV-SNGVDGIWND 333 (978)
T ss_pred -----CCCCHHHHhHhhcCee--EECCCCCeeEe----eecCCCccc--cCCCCHHHHHHHHHHHHHHh-cCCCcEEEcc
Confidence 1112222110 0000 00000001110 111122222 57899999999999999888 7999999999
Q ss_pred ccc
Q 002585 680 FVR 682 (904)
Q Consensus 680 ~a~ 682 (904)
+..
T Consensus 334 mnE 336 (978)
T PLN02763 334 MNE 336 (978)
T ss_pred CCC
Confidence 853
No 96
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=84.24 E-value=2.7 Score=46.74 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHHcCC--CEEEeCCCcCC-CC----CCCCCcccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEee
Q 002585 524 RWYMELKEKATELSSLGF--SVIWLPPPTES-VS----PEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVV 595 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~LGV--naI~L~PIfes-~s----~hGYd~~Dy~~IDp-~lGt~edlk~LV~aAH~~GIkVILD~V 595 (904)
.+-+.+.+-++.+++.|| ++|+|=-=+-. .. ..+|. -+..|+ +|- +.++||+++|++|+|||+-+.
T Consensus 22 ~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~---~ft~d~~~FP---dp~~mi~~Lh~~G~k~v~~v~ 95 (292)
T cd06595 22 YSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWT---GYSWNRKLFP---DPEKLLQDLHDRGLKVTLNLH 95 (292)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcc---eeEEChhcCC---CHHHHHHHHHHCCCEEEEEeC
Confidence 356788888888888665 66776221100 00 01111 244553 453 568999999999999998886
Q ss_pred cccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccE
Q 002585 596 LNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDG 675 (904)
Q Consensus 596 ~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDG 675 (904)
+.. +.+.. ...|..+.... ...... ....-+|+.||+.++...+.+..-+.+.||||
T Consensus 96 P~~-~~~~~--~~~y~~~~~~~---------~~~~~~-----------~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg 152 (292)
T cd06595 96 PAD-GIRAH--EDQYPEMAKAL---------GVDPAT-----------EGPILFDLTNPKFMDAYFDNVHRPLEKQGVDF 152 (292)
T ss_pred CCc-ccCCC--cHHHHHHHHhc---------CCCccc-----------CCeEEecCCCHHHHHHHHHHHHHHHHhcCCcE
Confidence 642 21110 00011110000 000000 01123688999998876665544444899999
Q ss_pred EEecccc
Q 002585 676 WRLDFVR 682 (904)
Q Consensus 676 fRlD~a~ 682 (904)
|=.|+..
T Consensus 153 ~W~D~~E 159 (292)
T cd06595 153 WWLDWQQ 159 (292)
T ss_pred EEecCCC
Confidence 9999753
No 97
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=84.16 E-value=2.6 Score=47.79 Aligned_cols=109 Identities=15% Similarity=0.144 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHcCC--CEEEeCCCcCCCCCCCCCcccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 002585 525 WYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGV--naI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~ 601 (904)
+-..+.+.++.+.+.+| ++|||=.=+. .+|. .+..|+ +|-. .++|++++|++|++||+-+.+- +.
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~lDidy~----~~~~---~Ft~d~~~FPd---p~~mv~~L~~~G~klv~~i~P~-i~- 89 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHVDVDFQ----DNYR---TFTTNGGGFPN---PKEMFDNLHNKGLKCSTNITPV-IS- 89 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEcCchh----cCCC---ceeecCCCCCC---HHHHHHHHHHCCCeEEEEecCc-ee-
Confidence 56778888888887665 6777754221 1221 245554 5544 4789999999999998876532 11
Q ss_pred cCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEeccc
Q 002585 602 HYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFV 681 (904)
Q Consensus 602 ~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a 681 (904)
.| ..|.. . ... .|+.||++|++..+..+.+. +.|||||=+|+.
T Consensus 90 -----~g--------~~~~~------------~---------~~~--pDftnp~ar~wW~~~~~~l~-~~Gv~~~W~Dmn 132 (332)
T cd06601 90 -----YG--------GGLGS------------P---------GLY--PDLGRPDVREWWGNQYKYLF-DIGLEFVWQDMT 132 (332)
T ss_pred -----cC--------ccCCC------------C---------cee--eCCCCHHHHHHHHHHHHHHH-hCCCceeecCCC
Confidence 01 01110 0 012 46789999999888888887 789999999986
Q ss_pred c
Q 002585 682 R 682 (904)
Q Consensus 682 ~ 682 (904)
.
T Consensus 133 E 133 (332)
T cd06601 133 T 133 (332)
T ss_pred C
Confidence 4
No 98
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=83.87 E-value=3.3 Score=48.88 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeC--------------C-CcCCCCCCCCCcccCCCcCCCCC-------------CHHHH
Q 002585 525 WYMELKEKATELSSLGFSVIWLP--------------P-PTESVSPEGYMPRDLYNLSSRYG-------------NIDEL 576 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~--------------P-Ifes~s~hGYd~~Dy~~IDp~lG-------------t~edl 576 (904)
+...|.+-+|.++...+|.++|- | +.+.++..++...+...+-|.+| |.+|+
T Consensus 20 ~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~~di 99 (445)
T cd06569 20 SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSRADY 99 (445)
T ss_pred CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCHHHH
Confidence 47788888888999999998874 1 11122333333333333333332 78999
Q ss_pred HHHHHHHHHcCCEEEEEe-ecccccc
Q 002585 577 KDVVNKFHDVGMKILGDV-VLNHRCA 601 (904)
Q Consensus 577 k~LV~aAH~~GIkVILD~-V~NHt~~ 601 (904)
++||+-|++|||.||-.+ ++.|+..
T Consensus 100 ~eiv~yA~~rgI~VIPEID~PGH~~a 125 (445)
T cd06569 100 IEILKYAKARHIEVIPEIDMPGHARA 125 (445)
T ss_pred HHHHHHHHHcCCEEEEccCCchhHHH
Confidence 999999999999999987 6778764
No 99
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=83.24 E-value=1.9 Score=54.10 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=54.9
Q ss_pred HHHHHHHHHHcCCEEEEEeecccccccCCC-----CCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCC-CCCcc
Q 002585 576 LKDVVNKFHDVGMKILGDVVLNHRCAHYQN-----QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFH-AAPNI 649 (904)
Q Consensus 576 lk~LV~aAH~~GIkVILD~V~NHt~~~~~~-----~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~-~lpdl 649 (904)
.|+||+..|++|||+|.=+.+. ...+++. .+|-+.+ ...+....+..|. ...-+
T Consensus 323 pk~mi~~l~~~Gikl~~~i~P~-i~~d~~~~~e~~~~Gy~~k-------------------~~~g~~~~~~~w~~~~a~~ 382 (772)
T COG1501 323 PKQMIAELHEKGIKLIVIINPY-IKQDSPLFKEAIEKGYFVK-------------------DPDGEIYQADFWPGNSAFP 382 (772)
T ss_pred HHHHHHHHHhcCceEEEEeccc-cccCCchHHHHHHCCeEEE-------------------CCCCCEeeecccCCccccc
Confidence 3499999999999999877663 2333321 1111110 0011111222222 33447
Q ss_pred CCCCHHHHHHHHH-HHHHHHhccCccEEEeccccc
Q 002585 650 DHSQDFVRKDIKE-WLCWLRNEIGYDGWRLDFVRG 683 (904)
Q Consensus 650 N~~np~Vr~~i~~-~l~~Wi~e~GIDGfRlD~a~~ 683 (904)
|+.||++|+...+ ....++ ++|||||-.|+...
T Consensus 383 DFtnp~~r~Ww~~~~~~~l~-d~Gv~g~W~D~nEp 416 (772)
T COG1501 383 DFTNPDAREWWASDKKKNLL-DLGVDGFWNDMNEP 416 (772)
T ss_pred CCCCHHHHHHHHHHHHhHHH-hcCccEEEccCCCC
Confidence 8999999999994 556677 99999999999753
No 100
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=82.84 E-value=11 Score=42.33 Aligned_cols=123 Identities=13% Similarity=0.170 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcC-----CCCCCHHHHHHHHHHHHHcCCEEEEEe-eccc
Q 002585 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS-----SRYGNIDELKDVVNKFHDVGMKILGDV-VLNH 598 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~ID-----p~lGt~edlk~LV~aAH~~GIkVILD~-V~NH 598 (904)
....|.+-||.++.+++|.++|-= .+. ..+++....|=.+- ..+=|.+|+++||+-|.++||+||-.+ ++.|
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~Hl-tDd-~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PGH 93 (311)
T cd06570 16 PVAVIKRQLDAMASVKLNVFHWHL-TDD-QGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPGH 93 (311)
T ss_pred CHHHHHHHHHHHHHhCCeEEEEEE-ecC-CCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCccc
Confidence 477888889999999999887731 000 01222221221110 112388999999999999999999998 6777
Q ss_pred ccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHh
Q 002585 599 RCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRN 669 (904)
Q Consensus 599 t~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~ 669 (904)
+..--. .|..+ ..... .+. ....++. .-+.||..+|++.+++.+++..++.
T Consensus 94 ~~a~~~----~ypel----------~~~~~-~~~----~~~~~~~-~~~~l~~~~p~t~~f~~~l~~E~~~ 144 (311)
T cd06570 94 ASAIAV----AYPEL----------ASGPG-PYV----IERGWGV-FEPLLDPTNEETYTFLDNLFGEMAE 144 (311)
T ss_pred hHHHHH----hCHHh----------ccCCC-ccc----ccccccc-CCCccCCCChhHHHHHHHHHHHHHH
Confidence 763211 00000 00000 000 0000111 1135899999999999999988873
No 101
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=82.22 E-value=15 Score=40.63 Aligned_cols=65 Identities=12% Similarity=-0.010 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCC-CCC-CcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 002585 522 SGRWYMELKEKATELSSLGFSVIWLPPPTESVSP-EGY-MPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (904)
Q Consensus 522 ~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~-hGY-d~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~ 594 (904)
+|-+.+....-+|+-+++|+..|.+ +.+-+ +++ ...|+....+. .++++||+-|+++|++|+|=.
T Consensus 27 ~g~~t~~~k~yIDfAa~~G~eYvlv----D~GW~~~~~~~~~d~~~~~~~----~dl~elv~Ya~~KgVgi~lw~ 93 (273)
T PF10566_consen 27 HGATTETQKRYIDFAAEMGIEYVLV----DAGWYGWEKDDDFDFTKPIPD----FDLPELVDYAKEKGVGIWLWY 93 (273)
T ss_dssp BSSSHHHHHHHHHHHHHTT-SEEEE----BTTCCGS--TTT--TT-B-TT------HHHHHHHHHHTT-EEEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEe----ccccccccccccccccccCCc----cCHHHHHHHHHHcCCCEEEEE
Confidence 4668999999999999999999998 33311 111 24455555544 789999999999999999754
No 102
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=81.13 E-value=8.5 Score=42.07 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHHcC--CCEEEeCCCcCCCCCCCCCcccC-CCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 002585 524 RWYMELKEKATELSSLG--FSVIWLPPPTESVSPEGYMPRDL-YNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~LG--VnaI~L~PIfes~s~hGYd~~Dy-~~IDp-~lGt~edlk~LV~aAH~~GIkVILD~V~NHt 599 (904)
.+-+.+.+.++.+++.| +++|+|-.-+... | .++ +..|+ +|. +.++||+.+|++|++|++-+.+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~----~--~~f~~~~d~~~Fp---dp~~~i~~l~~~g~~~~~~~~P--- 88 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG----Y--GDFTFDWDAGKFP---NPKSMIDELHDNGVKLVLWIDP--- 88 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEECcccccC----C--ceeeeecChhhCC---CHHHHHHHHHHCCCEEEEEeCh---
Confidence 56788999999998855 4588886544332 1 111 24443 454 3688999999999999996533
Q ss_pred cccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEec
Q 002585 600 CAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 679 (904)
Q Consensus 600 ~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD 679 (904)
.|++...+.++..+.+.|||||-+|
T Consensus 89 -------------------------------------------------------~v~~w~~~~~~~~~~~~Gvdg~w~D 113 (265)
T cd06589 89 -------------------------------------------------------YIREWWAEVVKKLLVSLGVDGFWTD 113 (265)
T ss_pred -------------------------------------------------------hHHHHHHHHHHHhhccCCCCEEecc
Confidence 1155566666655448999999999
Q ss_pred ccccc
Q 002585 680 FVRGF 684 (904)
Q Consensus 680 ~a~~~ 684 (904)
.....
T Consensus 114 ~~E~~ 118 (265)
T cd06589 114 MGEPS 118 (265)
T ss_pred CCCCC
Confidence 88643
No 103
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=80.98 E-value=15 Score=42.13 Aligned_cols=125 Identities=10% Similarity=0.035 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCC-----------CcC----CCCCCCCCcc----cCCCcCC--CCCCHHHHHHHHHHH
Q 002585 525 WYMELKEKATELSSLGFSVIWLPP-----------PTE----SVSPEGYMPR----DLYNLSS--RYGNIDELKDVVNKF 583 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~P-----------Ife----s~s~hGYd~~----Dy~~IDp--~lGt~edlk~LV~aA 583 (904)
....|.+-+|.++.+++|.++|-- -++ .++..++... ......+ .+=|.+|+++||+-|
T Consensus 16 ~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA 95 (357)
T cd06563 16 PVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAYA 95 (357)
T ss_pred CHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHHH
Confidence 367788888999999999998842 111 1111111110 0011111 122689999999999
Q ss_pred HHcCCEEEEEe-ecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHH
Q 002585 584 HDVGMKILGDV-VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKE 662 (904)
Q Consensus 584 H~~GIkVILD~-V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~ 662 (904)
.++||+||-.+ ++.|+..--.. +..+. ..+. ...+.+.. ......||..+|++.+++.+
T Consensus 96 ~~rgI~VIPEID~PGH~~a~l~~----~pel~----------~~~~-----~~~~~~~~-~~~~~~L~~~~~~t~~f~~~ 155 (357)
T cd06563 96 AERGITVIPEIDMPGHALAALAA----YPELG----------CTGG-----PGSVVSVQ-GVVSNVLCPGKPETYTFLED 155 (357)
T ss_pred HHcCCEEEEecCCchhHHHHHHh----Ccccc----------CCCC-----CCcccccc-CcCCCccCCCChhHHHHHHH
Confidence 99999999997 66777532110 00000 0000 00000000 01122488899999999999
Q ss_pred HHHHHHh
Q 002585 663 WLCWLRN 669 (904)
Q Consensus 663 ~l~~Wi~ 669 (904)
++...++
T Consensus 156 ll~E~~~ 162 (357)
T cd06563 156 VLDEVAE 162 (357)
T ss_pred HHHHHHH
Confidence 9888874
No 104
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=80.89 E-value=9.4 Score=47.51 Aligned_cols=134 Identities=16% Similarity=0.188 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHHHHcCCC--EEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 002585 524 RWYMELKEKATELSSLGFS--VIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVn--aI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~ 601 (904)
+++..+.+..++..++||. ++|.- -....+ -.||.-=+-.|++ ++++++.+|++|+|+|+=+-++-.
T Consensus 308 ~nls~~~dvv~~~~~agiPld~~~~D----iDyMd~--ykDFTvd~~~fp~---~~~fv~~Lh~~G~kyvliidP~is-- 376 (805)
T KOG1065|consen 308 KNLSVVRDVVENYRAAGIPLDVIVID----IDYMDG--YKDFTVDKVWFPD---LKDFVDDLHARGFKYVLIIDPFIS-- 376 (805)
T ss_pred ccHHHHHHHHHHHHHcCCCcceeeee----hhhhhc--ccceeeccccCcc---hHHHHHHHHhCCCeEEEEeCCccc--
Confidence 6799999999999999986 55521 001111 2343322345666 999999999999998765442211
Q ss_pred cCCCCCCCcccCCCC---CCCCCCCccCCCCCCCCCCCCCCCCCCCC-CCccCCCCHHHHHHHHHHHHHHHhccCccEEE
Q 002585 602 HYQNQNGVWNIFGGR---LNWDDRAVVADDPHFQGRGNKSSGDNFHA-APNIDHSQDFVRKDIKEWLCWLRNEIGYDGWR 677 (904)
Q Consensus 602 ~~~~~~g~~~~y~g~---~~W~~~~~~~~~~~f~~~~~~~~~~~~~~-lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfR 677 (904)
.+..|.+|+.. ..|-. ...+... ..+..|++ ..=.|+.||.+.....+.+...-++.++||+=
T Consensus 377 ----~~~~y~~y~~g~~~~v~I~--------~~~g~~~-~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~w 443 (805)
T KOG1065|consen 377 ----TNSSYGPYDRGVAKDVLIK--------NREGSPK-MLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFW 443 (805)
T ss_pred ----cCccchhhhhhhhhceeee--------cccCchh-hhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccceE
Confidence 11112222110 00000 0000000 01111111 22256788988888888888777899999999
Q ss_pred eccc
Q 002585 678 LDFV 681 (904)
Q Consensus 678 lD~a 681 (904)
+|+-
T Consensus 444 iDmn 447 (805)
T KOG1065|consen 444 IDMN 447 (805)
T ss_pred EECC
Confidence 9995
No 105
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=80.26 E-value=1.8 Score=52.72 Aligned_cols=72 Identities=17% Similarity=0.137 Sum_probs=51.7
Q ss_pred HHHHHHHHHhCCCeeeeecCChh-----------------------------HH----------HHHHHHHHHHHHHhCc
Q 002585 802 EMQGYAYILTHPGTPSVFYDHIF-----------------------------SH----------YRQEIEALLSVRKRNK 842 (904)
Q Consensus 802 ~klA~allltlPGiP~IYyGdE~-----------------------------~W----------l~~~~r~Li~lRk~~p 842 (904)
...+..+-+|.||||=||.|.|. +| =.....+++.+|++++
T Consensus 708 sL~q~LlkltaPGVPD~YQGtE~wd~SLVDPDNRRpVDf~~~~~~L~~lq~~~~~l~~~~~Dg~K~~v~~~aL~lR~~~~ 787 (889)
T COG3280 708 SLAQTLLKLTAPGVPDIYQGTELWDFSLVDPDNRRPVDFATRAQALKALQEGDFELLEHWLDGIKQAVTAAALRLRREHP 787 (889)
T ss_pred HHHHHHHHHcCCCCCccccchhhhhccccCCCCCCCCcHHHHHHHHhcCCCCchhHHHHhhhhHHHHHHHHHHHHHHhch
Confidence 34455667899999999999983 11 1225678899999999
Q ss_pred c-ccCCCeeEEeeCC----CEEEEEE--C-CEEEEEEeC
Q 002585 843 I-HCRSRVEIVKAER----DVYAAII--D-EKVAMKLGP 873 (904)
Q Consensus 843 a-L~~G~~~~l~~~~----~v~a~~r--~-~~vlvvlnn 873 (904)
. +..|++..+...+ .+++|.| + +.+++++..
T Consensus 788 elF~~GdY~Pl~~~G~~a~hviAFaR~~~~~~~i~v~Pr 826 (889)
T COG3280 788 ELFAGGDYLPLFAAGPAADHVIAFARGKDDQFAITVAPR 826 (889)
T ss_pred HhhcCCCeeeecccCchhHHHHHHhhccCCceeEEeehH
Confidence 6 6899999998554 5678877 3 344555544
No 106
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=80.02 E-value=11 Score=45.20 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=24.5
Q ss_pred CCCCcceeecccCCCCCccCCCCCChhHHHHHHHH
Q 002585 774 WWPSRAVTFIENHDTGSTQGHWRFPGGREMQGYAY 808 (904)
Q Consensus 774 ~~P~~~vnflenHDt~R~~t~~~~~~~~~klA~al 808 (904)
.+|.++|.++++||++.+..-+.+.....+.-+.+
T Consensus 392 ~~~~nsva~tsTHD~ptl~gww~~~~~~~~~~~~~ 426 (520)
T COG1640 392 YYPPNSVATTSTHDLPTLRGWWEELDEELRRRLGL 426 (520)
T ss_pred hcccceeEEeccCCChhHHHHHhCCCHHHHHHHHH
Confidence 45668999999999998877776554444333333
No 107
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=78.99 E-value=3 Score=47.13 Aligned_cols=136 Identities=13% Similarity=0.174 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcC------C----CCCCHHHHHHHHHHHHHcCCEEEEEe
Q 002585 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLS------S----RYGNIDELKDVVNKFHDVGMKILGDV 594 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~ID------p----~lGt~edlk~LV~aAH~~GIkVILD~ 594 (904)
.+.-|.+-|+.++.+++|.++|--- +. ..+++....|-.+. + .+=|.+|+++||+.|+++||+||-.+
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~-D~-~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPei 93 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLS-DD-QGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEI 93 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEE-SS-TCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEe-cC-CCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeec
Confidence 5788999999999999999988421 11 00111111111000 0 03378999999999999999999998
Q ss_pred -ecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCc
Q 002585 595 -VLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGY 673 (904)
Q Consensus 595 -V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GI 673 (904)
++.|++.--.. +..+.. ..|.. + ...+...+.......+|..+|++.+++.+++..+++-+.-
T Consensus 94 d~PGH~~~~l~~----~p~~~~-~~~~~-----~------~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~ 157 (351)
T PF00728_consen 94 DTPGHAEAWLKA----YPELGC-SAWPE-----D------KSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFPS 157 (351)
T ss_dssp EESSS-HHHHHH----HHHHCC-CHTTC-----S------SSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHTS
T ss_pred cCchHHHHHHHh----Cchhhc-ccccc-----c------cccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCCC
Confidence 67888642110 000000 00000 0 0000000000111248899999999999999888865564
Q ss_pred cEEEe
Q 002585 674 DGWRL 678 (904)
Q Consensus 674 DGfRl 678 (904)
.-|-+
T Consensus 158 ~~iHi 162 (351)
T PF00728_consen 158 KYIHI 162 (351)
T ss_dssp SEEEE
T ss_pred CeEEe
Confidence 44443
No 108
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=78.97 E-value=3 Score=37.83 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=24.4
Q ss_pred eEEEecCccceeEEEEEeCCccccccCCcceEEeC
Q 002585 363 RLFTVDEEFAGFLFVLKLNENTWLKCMENDFYIPL 397 (904)
Q Consensus 363 ~~~~l~~~~~g~~fVl~~~~~~W~k~~g~df~i~l 397 (904)
..|++...-..|-||++.++++|=+|+|.||+++.
T Consensus 52 ~tv~vP~~a~~~dfvF~dg~~~wDNN~g~nY~~~V 86 (87)
T PF03423_consen 52 ATVDVPEDAYVMDFVFNDGAGNWDNNNGANYHFPV 86 (87)
T ss_dssp EEEE--TTTSEEEEEEE-SSS-EESTTTS-EEEES
T ss_pred EEEEEcCCceEEEEEEcCCCCcEeCCCCccEEEEc
Confidence 34677445557999999987899999999999985
No 109
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=77.90 E-value=6.2 Score=42.71 Aligned_cols=81 Identities=20% Similarity=0.156 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCC
Q 002585 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHS 652 (904)
Q Consensus 573 ~edlk~LV~aAH~~GIkVILD~V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~ 652 (904)
..++..++++||++|+|||+=+- ++... . + . --..
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~~-------~---~------------------~----------------~~~~ 79 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSPP-------E---F------------------T----------------AALN 79 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCCC-------c---c------------------h----------------hhhc
Confidence 35788999999999999998542 11100 0 0 0 0124
Q ss_pred CHHHHHHHHHHHHHHHhccCccEEEeccccccc-----cchHHHHHHhcCC
Q 002585 653 QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFW-----GGYVKDYLEATEP 698 (904)
Q Consensus 653 np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~-----~~f~~~~~~~~~p 698 (904)
++..|+.+++.+..+++++|+||.-||.-.... ..|++++.++.+.
T Consensus 80 ~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~~~~~~~fv~~Lr~~l~~ 130 (253)
T cd06545 80 DPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVTFGDYLVFIRALYAALKK 130 (253)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCceeEEeeccCccHhHHHHHHHHHHHHHhh
Confidence 688888888877777789999999999754221 2355555555543
No 110
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=77.54 E-value=5.3 Score=45.31 Aligned_cols=135 Identities=13% Similarity=0.110 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHHcCC--CEEEeCCCcCCCCCCCCCcccCCCcCC-CCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 002585 524 RWYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSS-RYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~LGV--naI~L~PIfes~s~hGYd~~Dy~~IDp-~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~ 600 (904)
.+-+.+.+.++.+++.|| ++|+|=.=+. .+|. .+..|+ +|- +.+.||+++|++|+|||+-+.+- +.
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~----~~~~---~f~~d~~~FP---dp~~mi~~L~~~G~k~~~~~~P~-v~ 89 (339)
T cd06603 21 KDQEDVKEVDAGFDEHDIPYDVIWLDIEHT----DGKR---YFTWDKKKFP---DPEKMQEKLASKGRKLVTIVDPH-IK 89 (339)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEChHHh----CCCC---ceEeCcccCC---CHHHHHHHHHHCCCEEEEEecCc-ee
Confidence 357788888888888775 6677653211 1222 245555 454 56889999999999999987643 22
Q ss_pred ccCCCCCCCcccCCCC--CCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHh--ccCccEE
Q 002585 601 AHYQNQNGVWNIFGGR--LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRN--EIGYDGW 676 (904)
Q Consensus 601 ~~~~~~~g~~~~y~g~--~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~--e~GIDGf 676 (904)
.+.. +..|... ..+.- ...+...|.. ..|.+. ..-+|+.||++++...+.++..+. ..|+|||
T Consensus 90 ~~~~-----~~~y~e~~~~g~~v--k~~~g~~~~~----~~w~g~--~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~ 156 (339)
T cd06603 90 RDDG-----YYVYKEAKDKGYLV--KNSDGGDFEG----WCWPGS--SSWPDFLNPEVRDWWASLFSYDKYKGSTENLYI 156 (339)
T ss_pred cCCC-----CHHHHHHHHCCeEE--ECCCCCEEEE----EECCCC--cCCccCCChhHHHHHHHHHHHHhhcccCCCceE
Confidence 2210 0001000 00000 0000000000 011111 223788999999999999988874 3699999
Q ss_pred Eecccc
Q 002585 677 RLDFVR 682 (904)
Q Consensus 677 RlD~a~ 682 (904)
=+|+..
T Consensus 157 w~D~~E 162 (339)
T cd06603 157 WNDMNE 162 (339)
T ss_pred EeccCC
Confidence 999764
No 111
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=76.75 E-value=7.8 Score=43.63 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=31.4
Q ss_pred CccCCCCHHHHHHHHHHHHHHHhccCccEEEecccccc
Q 002585 647 PNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF 684 (904)
Q Consensus 647 pdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~ 684 (904)
-.+|+.+++.++.|.+-+...+ +.|+|||-+|..+..
T Consensus 136 ~~vd~~~~~W~~il~~rl~~l~-~kGfDGvfLD~lDsy 172 (315)
T TIGR01370 136 YDVKYWDPEWKAIAFSYLDRVI-AQGFDGVYLDLIDAF 172 (315)
T ss_pred eeEecccHHHHHHHHHHHHHHH-HcCCCeEeeccchhh
Confidence 3588999999999998887776 899999999988643
No 112
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=75.89 E-value=7.8 Score=41.75 Aligned_cols=45 Identities=22% Similarity=0.477 Sum_probs=35.3
Q ss_pred HHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 002585 532 KATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (904)
Q Consensus 532 kLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~ 594 (904)
-|+++++|||++|.++= |. ..+ ..++..+||+.+|++|++|+-.+
T Consensus 76 Yl~~~k~lGf~~IEiS~--------G~-----~~i-----~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 76 YLNECDELGFEAVEISD--------GS-----MEI-----SLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred HHHHHHHcCCCEEEEcC--------Cc-----cCC-----CHHHHHHHHHHHHhCCCeEeccc
Confidence 34599999999999983 21 222 46889999999999999999653
No 113
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=74.76 E-value=44 Score=38.75 Aligned_cols=141 Identities=13% Similarity=0.074 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCCCEEEeCCCcCCC-CCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCC
Q 002585 529 LKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQN 607 (904)
Q Consensus 529 I~ekLdYLk~LGVnaI~L~PIfes~-s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~~~~~~~ 607 (904)
..+-++-+|+.|...|-|+-=.--+ .-|.=...+|..++... ..+-+++|++||+++||++-+ + |..
T Consensus 83 ~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~---Y-~S~------- 150 (384)
T smart00812 83 PEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGL---Y-HSL------- 150 (384)
T ss_pred HHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEE---E-cCH-------
Confidence 4555678899999988876432221 11111234566666544 558899999999999999988 1 222
Q ss_pred CCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHH---HHHHHHHHhccCccEEEecccccc
Q 002585 608 GVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDI---KEWLCWLRNEIGYDGWRLDFVRGF 684 (904)
Q Consensus 608 g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i---~~~l~~Wi~e~GIDGfRlD~a~~~ 684 (904)
.+|.. +.|.... ....-....+...+|+ ..-++.++.+||-|.+=+|.+-.-
T Consensus 151 ---------~DW~~-------p~y~~~~---------~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~ 205 (384)
T smart00812 151 ---------FDWFN-------PLYAGPT---------SSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWEA 205 (384)
T ss_pred ---------HHhCC-------Ccccccc---------ccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence 12321 0010000 0000112234556777 677888889999999999987432
Q ss_pred ccc-----hHHHHHHhcCCCE---EEEeec
Q 002585 685 WGG-----YVKDYLEATEPYF---AVGEYW 706 (904)
Q Consensus 685 ~~~-----f~~~~~~~~~p~~---liGE~w 706 (904)
+.. -+.+++....|.. +|.--|
T Consensus 206 ~~~~~~~~~l~~~~~~~qP~~~~vvvn~R~ 235 (384)
T smart00812 206 PDDYWRSKEFLAWLYNLSPVKDTVVVNDRW 235 (384)
T ss_pred ccchhcHHHHHHHHHHhCCCCceEEEEccc
Confidence 222 1223455556664 665444
No 114
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=74.54 E-value=7.2 Score=43.57 Aligned_cols=56 Identities=18% Similarity=0.278 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 002585 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (904)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~~ 602 (904)
-.....-+++||+||||+|-+ |.|||..-..+-++ ++.+.||.||+|+---+.+.+
T Consensus 52 ~~~C~rDi~~l~~LgiNtIRV-----------------Y~vdp~~nHd~CM~----~~~~aGIYvi~Dl~~p~~sI~ 107 (314)
T PF03198_consen 52 PEACKRDIPLLKELGINTIRV-----------------YSVDPSKNHDECMS----AFADAGIYVILDLNTPNGSIN 107 (314)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-----------------S---TTS--HHHHH----HHHHTT-EEEEES-BTTBS--
T ss_pred HHHHHHhHHHHHHcCCCEEEE-----------------EEeCCCCCHHHHHH----HHHhCCCEEEEecCCCCcccc
Confidence 345667789999999999984 68888875555444 456689999999987766554
No 115
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=72.69 E-value=12 Score=41.86 Aligned_cols=63 Identities=21% Similarity=0.360 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCC
Q 002585 572 NIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDH 651 (904)
Q Consensus 572 t~edlk~LV~aAH~~GIkVILD~V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~ 651 (904)
+.+.+++-|++||++|+|||+-+ +.. .+. ...
T Consensus 58 ~~~~~~~~i~~~q~~G~KVllSi-----GG~----~~~---------------------------------------~~~ 89 (312)
T cd02871 58 SPAEFKADIKALQAKGKKVLISI-----GGA----NGH---------------------------------------VDL 89 (312)
T ss_pred ChHHHHHHHHHHHHCCCEEEEEE-----eCC----CCc---------------------------------------ccc
Confidence 56789999999999999999875 210 000 012
Q ss_pred CCHHHHHHHHHHHHHHHhccCccEEEecccc
Q 002585 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 682 (904)
Q Consensus 652 ~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~ 682 (904)
.++.-|+.+.+.+..+++++|+||+=||--.
T Consensus 90 ~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~ 120 (312)
T cd02871 90 NHTAQEDNFVDSIVAIIKEYGFDGLDIDLES 120 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEeccc
Confidence 3456678888888888889999999999865
No 116
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=71.02 E-value=3.7 Score=46.29 Aligned_cols=59 Identities=12% Similarity=0.187 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCcCCC-CCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 002585 528 ELKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 595 (904)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~-s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V 595 (904)
-..+.|..+|++|+|+|..-=..... ...| ..|| -+..||.+|++.|+++||.|||-.=
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g--~~df-------~g~~dl~~f~~~a~~~gl~vilrpG 84 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEEG--QFDF-------TGNRDLDRFLDLAQENGLYVILRPG 84 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBTT--B----------SGGG-HHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCCC--cccc-------cchhhHHHHHHHHHHcCcEEEeccc
Confidence 35788899999999999764221111 1011 1222 2347899999999999999998743
No 117
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=70.89 E-value=13 Score=41.55 Aligned_cols=112 Identities=12% Similarity=0.039 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCC--CcCCCCCCCCCcccCCCcC--CCCCCHHHHHHHHHHHHHcCCEEEEEe-ecccc
Q 002585 525 WYMELKEKATELSSLGFSVIWLPP--PTESVSPEGYMPRDLYNLS--SRYGNIDELKDVVNKFHDVGMKILGDV-VLNHR 599 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~P--Ifes~s~hGYd~~Dy~~ID--p~lGt~edlk~LV~aAH~~GIkVILD~-V~NHt 599 (904)
+..-|.+-++.|+.+|+|.++|-= -|+.. .+-.+. ...=|.+|+++|++-|.++||.||-.+ ++.|+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~--------~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~ 86 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYE--------GEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHL 86 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecC--------CCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHH
Confidence 477788899999999999998731 11111 111111 112279999999999999999999876 56676
Q ss_pred cccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccC
Q 002585 600 CAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIG 672 (904)
Q Consensus 600 ~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~G 672 (904)
..--... . |.. ..... ...-.||..+|+..+++.+.+...++-+.
T Consensus 87 ~~~l~~~--~---~~~---------------l~~~~--------~~~~~l~~~~~~t~~fi~~li~ev~~~f~ 131 (301)
T cd06565 87 EFILKHP--E---FRH---------------LREVD--------DPPQTLCPGEPKTYDFIEEMIRQVLELHP 131 (301)
T ss_pred HHHHhCc--c---ccc---------------ccccC--------CCCCccCCCChhHHHHHHHHHHHHHHhCC
Confidence 5311100 0 100 00000 00123888899999999999888885443
No 118
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=67.29 E-value=9 Score=44.68 Aligned_cols=59 Identities=20% Similarity=0.315 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcc-cCCCcCCCCCCHH---HHHHHHHHHHHcCCEEEEEee
Q 002585 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPR-DLYNLSSRYGNID---ELKDVVNKFHDVGMKILGDVV 595 (904)
Q Consensus 529 I~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~-Dy~~IDp~lGt~e---dlk~LV~aAH~~GIkVILD~V 595 (904)
..+-+.++|+.|+|+|-++ .+|... .....+|.+=..+ -+.+.|+.|.++||+|++|+.
T Consensus 75 ~~~~~~~ik~~G~n~VRiP--------i~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H 137 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIP--------IGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLH 137 (407)
T ss_pred hhhHHHHHHHcCCcEEEcc--------cchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEec
Confidence 4777899999999999875 333332 1111455554322 466779999999999999963
No 119
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=67.18 E-value=22 Score=39.43 Aligned_cols=59 Identities=22% Similarity=0.309 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHH---HHHHHHHHcCCEEEEEeec
Q 002585 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELK---DVVNKFHDVGMKILGDVVL 596 (904)
Q Consensus 529 I~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk---~LV~aAH~~GIkVILD~V~ 596 (904)
-.+.|.-||.-|||.|-|-=.. +.||. .=++-.|+..|++ ++.++|++.||||++|+-+
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwn-----dP~ds----ngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHY 126 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWN-----DPYDS----NGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHY 126 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEec-----CCccC----CCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccc
Confidence 3566788999999998653211 11111 1122334444444 5667889999999999854
No 120
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=66.80 E-value=9.9 Score=36.27 Aligned_cols=44 Identities=23% Similarity=0.574 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 002585 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGD 593 (904)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD 593 (904)
-..+.+-++.+.++|+.++|+.|= ..-+++++.|+++||+|+..
T Consensus 65 ~~~~~~~v~~~~~~g~~~v~~~~g------------------------~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 65 PDKVPEIVDEAAALGVKAVWLQPG------------------------AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-TT------------------------S--HHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcc------------------------hHHHHHHHHHHHcCCEEEeC
Confidence 456888999999999999999983 44577889999999999854
No 121
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=66.15 E-value=62 Score=36.92 Aligned_cols=148 Identities=11% Similarity=0.051 Sum_probs=76.6
Q ss_pred HHHHHHHHHHcCCCEEEeCCCcCCC-CCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCC
Q 002585 529 LKEKATELSSLGFSVIWLPPPTESV-SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQN 607 (904)
Q Consensus 529 I~ekLdYLk~LGVnaI~L~PIfes~-s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~~~~~~~ 607 (904)
..+=++-+|++|...|-|+--.-.+ .-|.=...+|..++.. +..+-+++|+++|+++|||+.+ +-|..+
T Consensus 93 ~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~-~krDiv~El~~A~rk~Glk~G~---Y~S~~d------ 162 (346)
T PF01120_consen 93 ADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSG-PKRDIVGELADACRKYGLKFGL---YYSPWD------ 162 (346)
T ss_dssp HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGG-GTS-HHHHHHHHHHHTT-EEEE---EEESSS------
T ss_pred HHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCC-CCCCHHHHHHHHHHHcCCeEEE---EecchH------
Confidence 4555678899999999887543322 1122223344444422 2457899999999999999998 211111
Q ss_pred CCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCC-CHHHHHHHHHHHHHHHhccCccEEEecccccccc
Q 002585 608 GVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHS-QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG 686 (904)
Q Consensus 608 g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~-np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~ 686 (904)
|....... ...... ...++.... ...+.++...-++.++.+|.+|.+=+|....-..
T Consensus 163 -----------w~~~~~~~-----~~~~~~------~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~~~ 220 (346)
T PF01120_consen 163 -----------WHHPDYPP-----DEEGDE------NGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPDPD 220 (346)
T ss_dssp -----------CCCTTTTS-----SCHCHH------CC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSCCC
T ss_pred -----------hcCcccCC-----CccCCc------ccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCccc
Confidence 11000000 000000 000000000 1224446777888999999999999999864222
Q ss_pred c-----hHHHHHHhcCCCEEEEeecCC
Q 002585 687 G-----YVKDYLEATEPYFAVGEYWDS 708 (904)
Q Consensus 687 ~-----f~~~~~~~~~p~~liGE~w~~ 708 (904)
+ -+.+.+++..|..+|..-|..
T Consensus 221 ~~~~~~~~~~~i~~~qp~~ii~~r~~~ 247 (346)
T PF01120_consen 221 EDWDSAELYNWIRKLQPDVIINNRWGG 247 (346)
T ss_dssp THHHHHHHHHHHHHHSTTSEEECCCSS
T ss_pred cccCHHHHHHHHHHhCCeEEEecccCC
Confidence 1 222345566787666554443
No 122
>PLN02950 4-alpha-glucanotransferase
Probab=66.06 E-value=18 Score=46.48 Aligned_cols=69 Identities=17% Similarity=0.263 Sum_probs=53.8
Q ss_pred eeeeecccccCCC-CC-CCHHHHHHHHHHHHHcCCCEEEeCCCcCCCC-----C-CCCCcccCCCcCCCCCCHHHHH
Q 002585 509 EILCQGFNWESHK-SG-RWYMELKEKATELSSLGFSVIWLPPPTESVS-----P-EGYMPRDLYNLSSRYGNIDELK 577 (904)
Q Consensus 509 ~i~~~~F~Wd~~~-~G-Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~s-----~-hGYd~~Dy~~IDp~lGt~edlk 577 (904)
.+.++-|.-.+.. .| |||.++.+-+|.+++.|.+.|+|+|+.+... + -.|.+.+-+++||.|=+.++|-
T Consensus 263 Gi~~~l~SLrS~~s~GIGDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falNPlyI~l~~l~ 339 (909)
T PLN02950 263 GVAVPVFSIRSEEDVGVGEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALHPLYLRVQALS 339 (909)
T ss_pred EEEEecccCCCCCCCCeeCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCcccccccChhhcCHHHHH
Confidence 3555555433322 24 9999999999999999999999999988652 2 3799999999999999887663
No 123
>smart00632 Aamy_C Aamy_C domain.
Probab=65.64 E-value=9.4 Score=33.94 Aligned_cols=23 Identities=9% Similarity=-0.071 Sum_probs=19.3
Q ss_pred eCC-CEEEEEECCEEEEEEeCCCC
Q 002585 854 AER-DVYAAIIDEKVAMKLGPGHY 876 (904)
Q Consensus 854 ~~~-~v~a~~r~~~vlvvlnn~~~ 876 (904)
.++ ++|+|.|+++.+|+||++..
T Consensus 5 ~~~~~~laF~Rg~~g~VaiN~~~~ 28 (81)
T smart00632 5 DNGDNQIAFERGSKGFVAINRSDS 28 (81)
T ss_pred ECCCeEEEEECCCeEEEEEECCCC
Confidence 344 49999999999999999864
No 124
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=65.15 E-value=5.6 Score=47.64 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=35.9
Q ss_pred CCH-HHHHHHHHHHHHcCCCEEEeCCCcCCC--CCCCCCcccCCCcCCCCCCHHHHHHH
Q 002585 524 RWY-MELKEKATELSSLGFSVIWLPPPTESV--SPEGYMPRDLYNLSSRYGNIDELKDV 579 (904)
Q Consensus 524 Gdl-~GI~ekLdYLk~LGVnaI~L~PIfes~--s~hGYd~~Dy~~IDp~lGt~edlk~L 579 (904)
||| .++.+-++.+++.|+..++|.|++... ....|.+.+-+.+||.|=..+.+.+.
T Consensus 15 GDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alNPlyI~l~~l~e~ 73 (496)
T PF02446_consen 15 GDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALNPLYIDLEALPEF 73 (496)
T ss_dssp --SSHHHHHHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--GGGS-SHHHHHT
T ss_pred ecHHHHHHHHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCChHHcCHHHhhhc
Confidence 899 999999999999999999999999886 33489999999999999887765543
No 125
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=63.65 E-value=10 Score=44.28 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=40.8
Q ss_pred CCCCCccCC-----CCHHHHHHHHHHHHHHHhccCccEEEeccccccccchHHHHHH---hcCCC
Q 002585 643 FHAAPNIDH-----SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWGGYVKDYLE---ATEPY 699 (904)
Q Consensus 643 ~~~lpdlN~-----~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~~f~~~~~~---~~~p~ 699 (904)
|.+..+|+| .+|.+|++|.++.+... .-++|||||.++..|-..-+.+++ .++|+
T Consensus 360 WGDcVKLRYG~~peDsP~LW~~M~~Yt~~~A--~iF~G~RiDNCHSTPlhVaeylLd~AR~v~Pn 422 (423)
T PF14701_consen 360 WGDCVKLRYGSKPEDSPFLWKHMKEYTELMA--KIFHGFRIDNCHSTPLHVAEYLLDAARKVNPN 422 (423)
T ss_pred cCceeeecCCCCCCCCHHHHHHHHHHHHHHH--HhcCeeeeecCCCCcHHHHHHHHHHHHhhCCC
Confidence 345566665 57999999999998886 578999999999877655444444 34554
No 126
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=62.77 E-value=31 Score=39.17 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCC---HHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 002585 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN---IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (904)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt---~edlk~LV~aAH~~GIkVILD~V~NHt~~~~ 603 (904)
..++.....++=|+..|..-.+.-.....+|. -.+.+-+ .+.||+|++++|++|-+|++=+ +|.|...
T Consensus 37 ~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~------~~~~i~~d~~i~~~k~l~~~vh~~Ga~i~~QL--~H~G~~~ 107 (341)
T PF00724_consen 37 RLIAYYERRAKGGAGLIITEATAVSPEGRGFP------GQPGIWDDEQIPGLKKLADAVHAHGAKIIAQL--WHAGRQA 107 (341)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEEESSGGGSSST------TSEBSSSHHHHHHHHHHHHHHHHTTSEEEEEE--E--GGGS
T ss_pred HHHHHHHHHhhcCCceEEeccccccccccccc------ccchhchhhHHHHHHHHHHHHHhcCccceeec--ccccccc
Confidence 56666666677788888665444333211111 1112223 5689999999999999999876 7787655
No 127
>PRK15452 putative protease; Provisional
Probab=61.86 E-value=43 Score=39.58 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCC-CcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 002585 524 RWYMELKEKATELSSLGFSVIWLPP-PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~P-Ifes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVIL 592 (904)
|++..+...+ +.|+++||+-. -|.... ...+| +.++|++.|+.||++|++|.+
T Consensus 11 g~~e~l~aAi----~~GADaVY~G~~~~~~R~----~~~~f--------~~edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 11 GTLKNMRYAF----AYGADAVYAGQPRYSLRV----RNNEF--------NHENLALGINEAHALGKKFYV 64 (443)
T ss_pred CCHHHHHHHH----HCCCCEEEECCCccchhh----hccCC--------CHHHHHHHHHHHHHcCCEEEE
Confidence 5665555444 67999999953 221111 11222 568999999999999999977
No 128
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=59.26 E-value=18 Score=45.23 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecc
Q 002585 574 DELKDVVNKFHDVGMKILGDVVLN 597 (904)
Q Consensus 574 edlk~LV~aAH~~GIkVILD~V~N 597 (904)
.+++++-+.|+++||.||.|+.+-
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIg 297 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIG 297 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 478888999999999999999884
No 129
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=58.50 E-value=11 Score=42.86 Aligned_cols=28 Identities=18% Similarity=0.431 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhccCccEEEecccccc
Q 002585 657 RKDIKEWLCWLRNEIGYDGWRLDFVRGF 684 (904)
Q Consensus 657 r~~i~~~l~~Wi~e~GIDGfRlD~a~~~ 684 (904)
+..+++-|...++.||+|||=+|.-...
T Consensus 88 ~~~~a~kLv~lak~yGfDGw~iN~E~~~ 115 (339)
T cd06547 88 SFPVADKLVEVAKYYGFDGWLINIETEL 115 (339)
T ss_pred chHHHHHHHHHHHHhCCCceEeeeeccC
Confidence 4445555556666889999999987766
No 130
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=58.12 E-value=24 Score=44.02 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcCC-----CCCCCCCcccCCCcCCCCCCHHHHHHHH
Q 002585 524 RWYMELKEKATELSSLGFSVIWLPPPTES-----VSPEGYMPRDLYNLSSRYGNIDELKDVV 580 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes-----~s~hGYd~~Dy~~IDp~lGt~edlk~LV 580 (904)
|||..+.+-++.+++.|.+.+.|+|+... ..+..|.+.+-+.+||.|=..+++-++.
T Consensus 162 GDfgdl~~l~d~~a~~G~~~~qlnPlha~~p~~p~~~SPYsp~Sr~alNPlyI~~e~l~e~~ 223 (695)
T PRK11052 162 GDFGDLKQMLEDVAKRGGDFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVEDFQ 223 (695)
T ss_pred ecHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCcccccccccChHHcCHHHHhhhh
Confidence 99999999999999999999999999953 2567899999999999999888776653
No 131
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=57.74 E-value=22 Score=38.64 Aligned_cols=49 Identities=29% Similarity=0.432 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 002585 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 595 (904)
Q Consensus 529 I~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V 595 (904)
+.+-|+++++|||++|.++= |+-. + +.++..++|+.|+++|++|+-.+=
T Consensus 86 ~~~yl~~~k~lGf~~IEiSd--------Gti~-----l-----~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 86 FDEYLEECKELGFDAIEISD--------GTID-----L-----PEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp HHHHHHHHHHCT-SEEEE----------SSS-------------HHHHHHHHHHHCCTTSEEEEEES
T ss_pred HHHHHHHHHHcCCCEEEecC--------Ccee-----C-----CHHHHHHHHHHHHHCCCEEeeccc
Confidence 45668899999999999872 3222 2 367899999999999999987764
No 132
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=56.73 E-value=1.8e+02 Score=32.41 Aligned_cols=123 Identities=12% Similarity=0.090 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHH-HHHHH-HHHHHcCCEEEEEeecccccccCCC
Q 002585 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDE-LKDVV-NKFHDVGMKILGDVVLNHRCAHYQN 605 (904)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~ed-lk~LV-~aAH~~GIkVILD~V~NHt~~~~~~ 605 (904)
.+-.-++.|+++|+|+|||-++....++.-.+.. |=.+.++--.+| |-+.+ +...+.|++|..=+.. .+-+.+.
T Consensus 18 nl~~l~~ri~~~~~~tV~Lqaf~d~~gdg~~~~~--YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPv--laf~lp~ 93 (294)
T PF14883_consen 18 NLDKLIQRIKDMGINTVYLQAFADPDGDGNADAV--YFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPV--LAFDLPK 93 (294)
T ss_pred HHHHHHHHHHHcCCCEEEEEeeeCCCCCCceeeE--EcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeeh--hhccCCC
Confidence 3555567899999999999998877665544433 334444444444 55555 4555999999888765 2222111
Q ss_pred CCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEe
Q 002585 606 QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL 678 (904)
Q Consensus 606 ~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRl 678 (904)
.. .|..... .. ..-....-|...+|++|+.|.++-.-+...-.+||+=|
T Consensus 94 --~~--------~~~~~~~-------~~-------~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILF 142 (294)
T PF14883_consen 94 --VK--------RADEVRT-------DR-------PDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILF 142 (294)
T ss_pred --cc--------hhhhccc-------cC-------CCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 00 0100000 00 00112234667789999999999999985559999888
No 133
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=56.53 E-value=21 Score=40.10 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCC-EEEeCCCcCCCCCCCCCcccC-CCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 002585 530 KEKATELSSLGFS-VIWLPPPTESVSPEGYMPRDL-YNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (904)
Q Consensus 530 ~ekLdYLk~LGVn-aI~L~PIfes~s~hGYd~~Dy-~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~N 597 (904)
.++|..|++.|++ .|.|-+ ++.+ ..-. ..++..+ +.+++.+.++.+|++||+|..++.+.
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~--ES~~-----d~~L~~~inKg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G 178 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGL--ETAN-----DRIREKSINKGS-TFEDFIRAAELARKYGAGVKAYLLFK 178 (313)
T ss_pred HHHHHHHHHcCCCEEEEEec--CcCC-----HHHHHHhhCCCC-CHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 6888899999998 688764 2221 1112 2455555 88999999999999999999999996
No 134
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=56.53 E-value=26 Score=32.16 Aligned_cols=41 Identities=7% Similarity=0.111 Sum_probs=24.3
Q ss_pred EEeeCCCEEEEEE---CCEEEEEEeCCCCCCCCCCCCeEEEEcCCCe
Q 002585 851 IVKAERDVYAAII---DEKVAMKLGPGHYEPPSGSQNWSFVTEGRDY 894 (904)
Q Consensus 851 ~l~~~~~v~a~~r---~~~vlvvlnn~~~~~~~g~~~~~~~~~g~~y 894 (904)
+++.+++.+|++| +.+++++++|..... .+.+++.+++.+|
T Consensus 1 piy~d~~~~a~rKG~~g~qvi~vltN~Gs~~---~~~~~~~v~~~~f 44 (91)
T PF09260_consen 1 PIYSDDSTIAFRKGPDGSQVIVVLTNQGSNS---GGSYTLTVPNTGF 44 (91)
T ss_dssp EEEEETTEEEEEESSTTT-EEEEEE-S-T-T------EEEEESS---
T ss_pred CeEECCcEEEEEeCCCCCEEEEEEeCCCcCC---CCcEEEEEcCCCC
Confidence 4678899999999 458999999887644 3457777764333
No 135
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=55.61 E-value=17 Score=32.85 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=19.2
Q ss_pred EeeCCCEEEEEECC----EEEEEEeCCCC
Q 002585 852 VKAERDVYAAIIDE----KVAMKLGPGHY 876 (904)
Q Consensus 852 l~~~~~v~a~~r~~----~vlvvlnn~~~ 876 (904)
...++++|||.|.+ .++||+|++..
T Consensus 5 ~d~~~~v~af~R~~~~~~~~lvv~Nf~~~ 33 (95)
T PF02806_consen 5 DDNENNVIAFERKDKGDDRVLVVFNFSPE 33 (95)
T ss_dssp EEESSSEEEEEETTTETTEEEEEEESSSS
T ss_pred ccCCCCEEEEEEcCCCCCEEEEEEECCCc
Confidence 34567999999932 58999998776
No 136
>PRK15447 putative protease; Provisional
Probab=55.00 E-value=38 Score=37.86 Aligned_cols=57 Identities=7% Similarity=0.287 Sum_probs=41.2
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 002585 515 FNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (904)
Q Consensus 515 F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVIL 592 (904)
|.|- .|++.... ..|++.|+++||+.-.. -+-+ . .| +.+++++.|+.||++|.+|.+
T Consensus 10 ~~~p----~~~~~~~~---~~~~~~gaDaVY~g~~~---~~~R---~-------~f-~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 10 YYWP----KETVRDFY---QRAADSPVDIVYLGETV---CSKR---R-------EL-KVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred cCCC----CCCHHHHH---HHHHcCCCCEEEECCcc---CCCc---c-------CC-CHHHHHHHHHHHHHcCCEEEE
Confidence 6675 56666554 56788999999997211 1111 0 12 779999999999999999988
No 137
>PRK07094 biotin synthase; Provisional
Probab=54.76 E-value=20 Score=40.26 Aligned_cols=63 Identities=10% Similarity=0.060 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~ 600 (904)
.+.+..|++.|++.+.+.. ...++.-|-.+.+. .+.++..+.++.+|+.||.|..++++.+-+
T Consensus 129 ~e~l~~Lk~aG~~~v~~gl-------Es~~~~~~~~i~~~-~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpg 191 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRH-------ETADKELYAKLHPG-MSFENRIACLKDLKELGYEVGSGFMVGLPG 191 (323)
T ss_pred HHHHHHHHHcCCCEEEecc-------ccCCHHHHHHhCCC-CCHHHHHHHHHHHHHcCCeecceEEEECCC
Confidence 5678899999999998654 22223334455553 678999999999999999999999998654
No 138
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=53.99 E-value=21 Score=44.65 Aligned_cols=68 Identities=21% Similarity=0.235 Sum_probs=52.5
Q ss_pred eeeecccccCC-CCC-CCHHHHHHHHHHHHHcCCCEEEeCCCcCCCC-----C-CCCCcccCCCcCCCCCCHHHHH
Q 002585 510 ILCQGFNWESH-KSG-RWYMELKEKATELSSLGFSVIWLPPPTESVS-----P-EGYMPRDLYNLSSRYGNIDELK 577 (904)
Q Consensus 510 i~~~~F~Wd~~-~~G-Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~s-----~-hGYd~~Dy~~IDp~lGt~edlk 577 (904)
+.++-|.-.+. ..| |||-.+.+-+|.+++.|.+.|+|+|+..... + ..|.+.+-+++||.|=..+.|.
T Consensus 64 ill~l~SLrS~~s~GIGDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle~L~ 139 (745)
T PLN03236 64 MALPVFSLRSAESVGAGDFGDLEALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLKELV 139 (745)
T ss_pred eeeccccCCCCCCCCcccHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHHHhh
Confidence 44444432222 134 8999999999999999999999999988752 3 4899999999999998877663
No 139
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=53.90 E-value=22 Score=47.24 Aligned_cols=68 Identities=21% Similarity=0.115 Sum_probs=53.4
Q ss_pred eeeeecccccCC-CCC-CCHHHHHHHHHHHHHcCCCEEEeCCCcCCC-CC----CCCCcccCCCcCCCCCCHHHH
Q 002585 509 EILCQGFNWESH-KSG-RWYMELKEKATELSSLGFSVIWLPPPTESV-SP----EGYMPRDLYNLSSRYGNIDEL 576 (904)
Q Consensus 509 ~i~~~~F~Wd~~-~~G-Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~-s~----hGYd~~Dy~~IDp~lGt~edl 576 (904)
.+.+|-|.-.+. ..| |||.++.+-++.+++.|.+.|+|+|+.... .+ ..|.+.+-+.+||.|=..+.+
T Consensus 726 Gv~~~l~sLrs~~~~GiGDf~dl~~~vd~~a~~G~~~~qilPl~~~~~~~p~~~SPYsp~S~~alNplyI~~~~l 800 (1221)
T PRK14510 726 GILMHLYSLRSQRPWGIGDFEELYALVDFLAEGGQSLWGVNPLHPLGLGDPERASPYQPSSRRAGNPLLISLDLL 800 (1221)
T ss_pred EEEEccccCCCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCccchhccccChhhcCHhhc
Confidence 355555543331 234 999999999999999999999999998865 33 789999999999988876544
No 140
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=53.71 E-value=44 Score=31.69 Aligned_cols=54 Identities=26% Similarity=0.423 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 002585 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (904)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVIL 592 (904)
-.++..++..|++-|+++|+|..=.....+++.-| ..+.++++|+++= |+.||.
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP-----------~~~~~~~~I~~~~--gi~VV~ 104 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCP-----------HIDEIKKIIEEKF--GIEVVE 104 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCC-----------CHHHHHHHHHHHh--CCCEee
Confidence 56788899999999999999998555544333222 2456666665533 998874
No 141
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=53.24 E-value=1e+02 Score=33.55 Aligned_cols=49 Identities=18% Similarity=0.070 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHHHhccCccEEEecccccccc----chHHHHHHhcCCCEE
Q 002585 653 QDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGFWG----GYVKDYLEATEPYFA 701 (904)
Q Consensus 653 np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~~~----~f~~~~~~~~~p~~l 701 (904)
+++-|+.+.+.+..+++++|+||+-||--..... .+++++..+..+.++
T Consensus 93 ~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~~~~~~~ll~~Lr~~~~~~~~ 145 (256)
T cd06546 93 DDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMSLDGIIRLIDRLRSDFGPDFI 145 (256)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCceEEeeecCCCHhHHHHHHHHHHHHhCCCcE
Confidence 4555666666666677799999999997653222 344444444444443
No 142
>PLN03059 beta-galactosidase; Provisional
Probab=52.16 E-value=23 Score=44.78 Aligned_cols=60 Identities=10% Similarity=0.042 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 002585 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (904)
Q Consensus 527 ~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~ 594 (904)
+-..++|..+|++|+|+|..-=+.... --.+.. -.|.+..||.+|++.|++.||.||+=.
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~H---Ep~~G~-----~dF~G~~DL~~Fl~la~e~GLyvilRp 118 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGH---EPSPGN-----YYFEDRYDLVKFIKVVQAAGLYVHLRI 118 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeccccc---CCCCCe-----eeccchHHHHHHHHHHHHcCCEEEecC
Confidence 456888999999999999743221111 101111 134568899999999999999999853
No 143
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=51.78 E-value=35 Score=37.91 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCcCCCC-----CCCCCc--------ccCCCcCCCCCCHHHHHHHHHHHHHcCCEEE
Q 002585 525 WYMELKEKATELSSLGFSVIWLPPPTESVS-----PEGYMP--------RDLYNLSSRYGNIDELKDVVNKFHDVGMKIL 591 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~s-----~hGYd~--------~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVI 591 (904)
+...+..-|+.+|+-|||+|+++=+-+..+ ..|+.+ .|+..++|.| -+-+.+.|+.|.++||.+
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi~~- 104 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGIEA- 104 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-EE-
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCCeE-
Confidence 456677779999999999999875444321 122222 2444454433 357888999999999988
Q ss_pred EEeeccc
Q 002585 592 GDVVLNH 598 (904)
Q Consensus 592 LD~V~NH 598 (904)
++|+=|
T Consensus 105 -~lv~~w 110 (289)
T PF13204_consen 105 -ALVPFW 110 (289)
T ss_dssp -EEESS-
T ss_pred -EEEEEE
Confidence 467655
No 144
>PLN02950 4-alpha-glucanotransferase
Probab=51.70 E-value=30 Score=44.53 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCEEEEEeecc
Q 002585 574 DELKDVVNKFHDVGMKILGDVVLN 597 (904)
Q Consensus 574 edlk~LV~aAH~~GIkVILD~V~N 597 (904)
.+++++.+.|+++||+||.|+.+-
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpig 484 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIG 484 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 378889999999999999999884
No 145
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=51.45 E-value=27 Score=41.77 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCC-EEEEEeeccccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM-KILGDVVLNHRC 600 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GI-kVILD~V~NHt~ 600 (904)
.++|..|+++||+.|.|.| ...+..-+..+. +-.+.+++.+.++.|++.|+ .|-+|+.+..-+
T Consensus 269 ~e~L~~Lk~~Gv~RISIGv-------QS~~d~vLk~ig-R~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPg 332 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINP-------QTMNDETLKAIG-RHHTVEDIIEKFHLAREMGFDNINMDLIIGLPG 332 (488)
T ss_pred HHHHHHHHhcCCCeEEEcC-------CcCCHHHHHHhC-CCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCC
Confidence 6889999999999999887 222333233443 34688999999999999999 788999996543
No 146
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=51.32 E-value=54 Score=34.84 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCc-------CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 002585 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNL-------SSRYGNIDELKDVVNKFHDVGMKILG 592 (904)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~I-------Dp~lGt~edlk~LV~aAH~~GIkVIL 592 (904)
-..|.+-.+.|+++|+..|.|+|.+..+ ..-|..+ |-..=+.++++++.+.+.++|+++++
T Consensus 144 ~e~i~~ia~~l~~l~~~~~~llpyh~~g------~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 144 RENMQQALDVLIPLGIKQIHLLPFHQYG------EPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHHHHHHcCCceEEEecCCccc------hhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 4556666678888999999999975543 2222222 21223678999999999999999975
No 147
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=49.96 E-value=27 Score=39.92 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEeecccccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCA 601 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIk-VILD~V~NHt~~ 601 (904)
.++|..|+++||+.|.|.. ...+..-+..+ -+-.+.++..+.|+.+++.|+. |-+|+++..-+.
T Consensus 100 ~e~l~~l~~~Gv~risiGv-------qS~~~~~l~~l-gR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 164 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGV-------QSFRDDKLLFL-GRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQ 164 (360)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCChHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCC
Confidence 5889999999999999864 22223223344 3456789999999999999996 789999976543
No 148
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=49.57 E-value=64 Score=38.14 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEe-ecccccc
Q 002585 572 NIDELKDVVNKFHDVGMKILGDV-VLNHRCA 601 (904)
Q Consensus 572 t~edlk~LV~aAH~~GIkVILD~-V~NHt~~ 601 (904)
|.+|..++|+-|+-||||||..+ ++.|++.
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 78999999999999999999988 6778875
No 149
>TIGR03356 BGL beta-galactosidase.
Probab=49.14 E-value=37 Score=39.96 Aligned_cols=57 Identities=14% Similarity=0.274 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCC-CC-----CHHHHHHHHHHHHHcCCEEEEEee
Q 002585 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSR-YG-----NIDELKDVVNKFHDVGMKILGDVV 595 (904)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~-lG-----t~edlk~LV~aAH~~GIkVILD~V 595 (904)
+.-..+-++-||+||++++=++= ++..|-|. -| ..+-++++|++|+++||++|+++.
T Consensus 53 y~~y~eDi~l~~~~G~~~~R~si-------------~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 53 YHRYEEDVALMKELGVDAYRFSI-------------AWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred HHhHHHHHHHHHHcCCCeEEccc-------------chhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec
Confidence 56678999999999999987642 12233222 12 346688999999999999999985
No 150
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=48.99 E-value=38 Score=37.23 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NH 598 (904)
.+.+..|+++|++.|.+. ++ .+ +.-|..+.+. .+.++..+.++.+|+.||+|...+++.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~--~E-~~-----~~~~~~i~~~-~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHN--LD-TS-----QEFYSNIIST-HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHHcCCCEEEEc--cc-CC-----HHHHhhccCC-CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 677899999999999987 33 22 2223344443 5788999999999999999999988865
No 151
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=48.58 E-value=27 Score=41.07 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEE-EEeecccccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKIL-GDVVLNHRCA 601 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVI-LD~V~NHt~~ 601 (904)
.++|..|+++||+.|.|.- ...+......++-.. +.++..+.|+.+|+.||.+| +|+.++.-+.
T Consensus 141 ~e~l~~l~~~G~~rvslGv-------QS~~~~~L~~l~R~~-~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~q 205 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGV-------QSFHDSELHALHRPQ-KRADVHQALEWIRAAGFPILNIDLIYGIPGQ 205 (430)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCCHHHHHHhCCCC-CHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 5889999999999998763 122222223333333 67889999999999999865 9999876553
No 152
>PRK06256 biotin synthase; Validated
Probab=48.52 E-value=26 Score=39.52 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NH 598 (904)
.+.+..|++.|++.+.+.. ++ + ..-|-.+.+. .+.++..+.++.||+.||+|...+++.+
T Consensus 152 ~e~l~~LkeaG~~~v~~~l--Et-s-----~~~~~~i~~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHNL--ET-S-----RSYFPNVVTT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred HHHHHHHHHhCCCEEecCC--cc-C-----HHHHhhcCCC-CCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 4677889999999998753 33 2 2224455554 3788999999999999999999999976
No 153
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=48.00 E-value=31 Score=39.68 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEeecccccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCA 601 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIk-VILD~V~NHt~~ 601 (904)
.++|+.|+++||+.|.|.. ...+..-...++ +-.+.++..+.++.+++.|+. |.+|++++.-+.
T Consensus 108 ~e~l~~l~~~G~~rvslGv-------QS~~~~~L~~l~-R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgq 172 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLGM-------QSAAPHVLAVLD-RTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGE 172 (375)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCC
Confidence 4788999999999999864 112222222333 335778888999999999999 999999986543
No 154
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=47.51 E-value=9.8 Score=35.51 Aligned_cols=102 Identities=6% Similarity=-0.060 Sum_probs=57.8
Q ss_pred chhhcccCcccCCCCcceeEEEe---cCccceeEEEEEeCCccccccCCcceEEeCCCCCCCCCcccccccccCCCcccc
Q 002585 345 NKALRTLLQPKEGGKGCSRLFTV---DEEFAGFLFVLKLNENTWLKCMENDFYIPLTSSSCLPAESVQEMLIPGKAEEAT 421 (904)
Q Consensus 345 ~~a~~Tpf~~~~~~~~~~~~~~l---~~~~~g~~fVl~~~~~~W~k~~g~df~i~l~~~~~~~~~~~~~~~~~~~~~~~~ 421 (904)
+..++ ||++ + .+.|.| ......+.+++..+ + | .+. ...++|...+.+ +....|++ ++...
T Consensus 7 ~~~~~-p~ga----~--~v~irlr~~~~~v~~v~l~~~~~-~-~--~~~-~~~~~M~~~~~~---~~~~~~~~--~i~~~ 69 (116)
T cd02857 7 SEYAY-PYGA----D--TLHIRLRTKKGDVAKVYLRYGDP-Y-D--KGE-EEEVPMRKDGSD---ELFDYWEA--TLPPP 69 (116)
T ss_pred CceeE-EcCC----C--EEEEEEEecCCCccEEEEEEECC-C-C--CCC-ceEEEEEEeeeC---CceeEEEE--EEecC
Confidence 34566 8888 2 466666 44566777666655 2 1 112 247799776664 33345655 55543
Q ss_pred cccccchhhhhHHHHhhhcccCcccchhhc--ccchhhhhhhhHHH
Q 002585 422 QEVSQTAYTAGIIKEIRNLVSDFSSDISRK--TKSKEAQKSILLEI 465 (904)
Q Consensus 422 ~~~~~~~y~~~~~~~~~~~~~d~~s~~~~~--~~~~~~q~tv~~~~ 465 (904)
. +..+|+|.++.+-.....+..+-..+. .....+|+|++++.
T Consensus 70 -~-~~~~Y~F~l~~~~~~~~y~~~G~~~~~~~~~~~~Fq~t~~~~~ 113 (116)
T cd02857 70 -T-GRLRYYFELVDDGETVWYGEEGFSDEPPDTDANYFQFPYIHPA 113 (116)
T ss_pred -C-cEEEEEEEEEcCCEEEEEeCCccccccccccCCceeeCccCHH
Confidence 3 899999999743333222221111222 23567888888775
No 155
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=47.41 E-value=2.3e+02 Score=31.46 Aligned_cols=123 Identities=18% Similarity=0.275 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCC
Q 002585 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQN 605 (904)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~~~~~ 605 (904)
++-+-.++..|.+-+++.|-+=|- |...+-.=.+.+++|.+. +.|.++|.=+-+.......
T Consensus 29 ~ql~d~~~~~i~~~~f~llVVDps-------------~~g~~~~~~~~eelr~~~----~gg~~pIAYlsIg~ae~yR-- 89 (300)
T COG2342 29 YQLQDAYINEILNSPFDLLVVDPS-------------YCGPFNTPWTIEELRTKA----DGGVKPIAYLSIGEAESYR-- 89 (300)
T ss_pred hhcccchHHHHhcCCCcEEEEecc-------------ccCCCCCcCcHHHHHHHh----cCCeeEEEEEechhhhhhh--
Confidence 344567778888888888877662 122222334677888664 4677777666654333211
Q ss_pred CCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEecccccc
Q 002585 606 QNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRGF 684 (904)
Q Consensus 606 ~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~~ 684 (904)
.|=. ..|.. +.+.+-+..+. .|.+-=.+.|.+|+-++-+...+..++ +.|+||.-||.++..
T Consensus 90 ------~Ywd-~~w~~-----~~p~wLg~edP----~W~Gny~VkYW~~eWkdii~~~l~rL~-d~GfdGvyLD~VD~y 151 (300)
T COG2342 90 ------FYWD-KYWLT-----GRPDWLGEEDP----EWPGNYAVKYWEPEWKDIIRSYLDRLI-DQGFDGVYLDVVDAY 151 (300)
T ss_pred ------hHhh-hhhhc-----CCcccccCCCC----CCCCCceeeccCHHHHHHHHHHHHHHH-HccCceEEEeeechH
Confidence 1100 11211 11111111111 122222477889999999999999998 999999999999755
No 156
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=46.90 E-value=39 Score=37.65 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHhccCccEEEecccc
Q 002585 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 682 (904)
Q Consensus 652 ~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~ 682 (904)
.++..|+.+++.+..+++++|+||+-||--.
T Consensus 83 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~ 113 (313)
T cd02874 83 SNPEARQRLINNILALAKKYGYDGVNIDFEN 113 (313)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCcEEEeccc
Confidence 4678888888877777779999999999754
No 157
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=45.89 E-value=2.7e+02 Score=30.71 Aligned_cols=96 Identities=9% Similarity=0.112 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCC
Q 002585 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQN 607 (904)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~~~~~~~ 607 (904)
...+-++...+.|++.|.+. ...++ .+.++..|+.|+++|++|..-+.+-..+.
T Consensus 92 ~~~~di~~~~~~g~~~iri~---~~~~~-----------------~~~~~~~i~~ak~~G~~v~~~i~~~~~~~------ 145 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIF---DALND-----------------VRNLEVAIKAVKKAGKHVEGAICYTGSPV------ 145 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEe---ecCCh-----------------HHHHHHHHHHHHHCCCeEEEEEEecCCCC------
Confidence 35667778889999998763 11111 57899999999999999886443211100
Q ss_pred CCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEe-cccccccc
Q 002585 608 GVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL-DFVRGFWG 686 (904)
Q Consensus 608 g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRl-D~a~~~~~ 686 (904)
+ -.+++.+.++... +.|+|.+++ |.+..+.+
T Consensus 146 -----------~------------------------------------~~~~~~~~~~~~~-~~Ga~~i~l~DT~G~~~P 177 (275)
T cd07937 146 -----------H------------------------------------TLEYYVKLAKELE-DMGADSICIKDMAGLLTP 177 (275)
T ss_pred -----------C------------------------------------CHHHHHHHHHHHH-HcCCCEEEEcCCCCCCCH
Confidence 0 0356777777776 899999998 88877777
Q ss_pred chHHHHHHhcC
Q 002585 687 GYVKDYLEATE 697 (904)
Q Consensus 687 ~f~~~~~~~~~ 697 (904)
..+.++++.++
T Consensus 178 ~~v~~lv~~l~ 188 (275)
T cd07937 178 YAAYELVKALK 188 (275)
T ss_pred HHHHHHHHHHH
Confidence 77777666654
No 158
>PRK05660 HemN family oxidoreductase; Provisional
Probab=44.44 E-value=40 Score=38.90 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEE-EEEeecccccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKI-LGDVVLNHRCA 601 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkV-ILD~V~NHt~~ 601 (904)
.++|..|+++|||.|.|.. ...++.-+..+. +..+.++..+-|+.|++.|++. -+|+.+..-+.
T Consensus 107 ~e~l~~Lk~~Gv~risiGv-------qS~~~~~L~~l~-r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgq 171 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGV-------QSFSEEKLKRLG-RIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQ 171 (378)
T ss_pred HHHHHHHHHcCCCEEEecc-------CcCCHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 3899999999999999875 333333344444 3467888888999999999975 59999986553
No 159
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=43.82 E-value=82 Score=32.41 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHHhccCccEEEecccc
Q 002585 652 SQDFVRKDIKEWLCWLRNEIGYDGWRLDFVR 682 (904)
Q Consensus 652 ~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~ 682 (904)
.++..|+.+++.+..+++++|+||+-+|.-.
T Consensus 84 ~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~ 114 (210)
T cd00598 84 SDPASRAAFANSLVSFLKTYGFDGVDIDWEY 114 (210)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCceEEeeeC
Confidence 4567788888877778889999999999865
No 160
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=42.90 E-value=48 Score=34.01 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCccccCCC-------eeEEee----CCCEEEEEE
Q 002585 827 YRQEIEALLSVRKRNKIHCRSR-------VEIVKA----ERDVYAAII 863 (904)
Q Consensus 827 l~~~~r~Li~lRk~~paL~~G~-------~~~l~~----~~~v~a~~r 863 (904)
..++|+.|++||+.+|.|+-++ +.++.. ..++++...
T Consensus 43 a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~q~pGvIvM~i 90 (168)
T PF11852_consen 43 ASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPDQTPGVIVMSI 90 (168)
T ss_dssp HHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT--TTEEEEEE
T ss_pred HHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCCCCCcEEEEEe
Confidence 5789999999999999887654 333333 246777764
No 161
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=42.49 E-value=28 Score=41.04 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=45.9
Q ss_pred CCceeeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHH
Q 002585 506 TGFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD 585 (904)
Q Consensus 506 ~~y~i~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~ 585 (904)
-||++++.+|- .| -+.|-||++|-|++|-+==.|-.. -| ....+.--+..+|+-||.
T Consensus 413 aG~~IyIDDFG------TG-----YSnL~YLq~L~VDaLKIDKsFvdt--lg----------~~~a~~~I~~hII~MAk~ 469 (524)
T COG4943 413 AGHEIYIDDFG------TG-----YSNLHYLQSLPVDALKIDKSFVDT--LG----------TDSASHLIAPHIIEMAKS 469 (524)
T ss_pred cCCeEEEccCc------Cc-----chhHHHHhhCCccceeccHHHHHh--hc----------cCcccchhHHHHHHHHHH
Confidence 47889998884 12 456889999988887542221111 11 122233368899999999
Q ss_pred cCCEEEEEeec
Q 002585 586 VGMKILGDVVL 596 (904)
Q Consensus 586 ~GIkVILD~V~ 596 (904)
.||++|..+|=
T Consensus 470 L~L~iVaEGVE 480 (524)
T COG4943 470 LGLKIVAEGVE 480 (524)
T ss_pred cCCcEEeeccc
Confidence 99999999874
No 162
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=42.31 E-value=25 Score=40.72 Aligned_cols=67 Identities=15% Similarity=0.216 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeC---CCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 002585 523 GRWYMELKEKATELSSLGFSVIWLP---PPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (904)
Q Consensus 523 GGdl~GI~ekLdYLk~LGVnaI~L~---PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt 599 (904)
.++++++...|..||++||++|-+- -+.|..+...|+- .-.++|.+.+++.|+||..=+-|.-|
T Consensus 12 ~~~~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydW-------------s~Y~~l~~~vr~~GLk~~~vmsfH~c 78 (402)
T PF01373_consen 12 DNDWNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDW-------------SGYRELFEMVRDAGLKLQVVMSFHQC 78 (402)
T ss_dssp TSECHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB----------------HHHHHHHHHHHHTT-EEEEEEE-S-B
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCc-------------HHHHHHHHHHHHcCCeEEEEEeeecC
Confidence 4678899999999999999999763 1233333444543 45789999999999999999999888
Q ss_pred ccc
Q 002585 600 CAH 602 (904)
Q Consensus 600 ~~~ 602 (904)
+.+
T Consensus 79 GgN 81 (402)
T PF01373_consen 79 GGN 81 (402)
T ss_dssp SSS
T ss_pred CCC
Confidence 753
No 163
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=41.68 E-value=42 Score=39.69 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEeeccccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRC 600 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIk-VILD~V~NHt~ 600 (904)
.+.|..|+++||+.|.|.. ...++.-...++- -.+.++..+.|+.+++.|+. |-+|+.+..-+
T Consensus 152 ~e~l~~L~~~G~~rvsiGv-------QS~~~~vl~~l~R-~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPg 215 (453)
T PRK13347 152 AEMLQALAALGFNRASFGV-------QDFDPQVQKAINR-IQPEEMVARAVELLRAAGFESINFDLIYGLPH 215 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-------CCCCHHHHHHhCC-CCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCC
Confidence 6889999999999999875 2233333334443 36788999999999999997 88999987554
No 164
>PLN02803 beta-amylase
Probab=41.41 E-value=63 Score=38.72 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHcCCCEEEeC---CCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 002585 527 MELKEKATELSSLGFSVIWLP---PPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (904)
Q Consensus 527 ~GI~ekLdYLk~LGVnaI~L~---PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~~ 602 (904)
+++...|..||.+||+.|-+- -|.|..+...|+- ...++|++.+++.|+||..=+-|.-||.+
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdW-------------sgY~~l~~mvr~~GLKlq~vmSFHqCGGN 172 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNW-------------EGYAELVQMVQKHGLKLQVVMSFHQCGGN 172 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCc-------------HHHHHHHHHHHHcCCeEEEEEEecccCCC
Confidence 889999999999999999653 2334444455554 35688999999999999999999888764
No 165
>PRK09936 hypothetical protein; Provisional
Probab=40.97 E-value=75 Score=35.36 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHH-HHHHHHHHHHHcCCEEEEEeecc
Q 002585 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNID-ELKDVVNKFHDVGMKILGDVVLN 597 (904)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~e-dlk~LV~aAH~~GIkVILD~V~N 597 (904)
-....+.+..++.+|+++|.+- ..+| -|+.||+.+ -|.+++++|++.||+|++=+-++
T Consensus 37 ~~qWq~~~~~~~~~G~~tLivQ-------Wt~y-------G~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 37 DTQWQGLWSQLRLQGFDTLVVQ-------WTRY-------GDADFGGQRGWLAKRLAAAQQAGLKLVVGLYAD 95 (296)
T ss_pred HHHHHHHHHHHHHcCCcEEEEE-------eeec-------cCCCcccchHHHHHHHHHHHHcCCEEEEcccCC
Confidence 4667888899999999999875 1233 234677754 68999999999999999877665
No 166
>PRK05939 hypothetical protein; Provisional
Probab=40.70 E-value=69 Score=37.23 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=40.0
Q ss_pred HHHHcCCCEEEeCCCcCCC-----CCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 002585 535 ELSSLGFSVIWLPPPTESV-----SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (904)
Q Consensus 535 YLk~LGVnaI~L~PIfes~-----s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~ 596 (904)
.++.+|+..+++.+. +.. -..+-...-.-.+....|...+++++++.||++|+.||+|.++
T Consensus 105 ~l~~~G~~v~~v~~~-d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 105 TLRGLGVEVTMVDAT-DVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred HHHhcCCEEEEECCC-CHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 356788888877553 110 0111111112233445788899999999999999999999875
No 167
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=40.48 E-value=1.1e+02 Score=34.07 Aligned_cols=140 Identities=12% Similarity=0.221 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCC---HHHHHHHHHHHHHcCCEEEEEeecccccc
Q 002585 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN---IDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt---~edlk~LV~aAH~~GIkVILD~V~NHt~~ 601 (904)
+=+.+.++...||+-|+|++-+-== .--+.-.|...| .+....+. --|.+-+|+.|+++||.+|.-+|.=.-..
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~K-dd~G~lty~s~d--~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARiVvFKD~~ 151 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVK-DDYGELTYPSSD--EINKYTKSVNKFKDIEPVIKKAKENGIYAIARIVVFKDTI 151 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEec-CCCccEeccccc--hhhhhhhccccccccHHHHHHHHhcCeEEEEEEEEeeeee
Confidence 3455777888999999999864210 000222344333 22222232 24788899999999999999987621111
Q ss_pred cCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCC--CCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEec
Q 002585 602 HYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRG--NKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLD 679 (904)
Q Consensus 602 ~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~--~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD 679 (904)
-..+.+-...-|.+...|. .|...+ .+..+..| ++--++.+++|=+.+++.-+ ++|+|-..||
T Consensus 152 l~~~n~fk~av~~~gKpw~---------~~~ngaLrKe~~~ehW-----Vd~y~~~~WeYNvtIAKEa~-~fGfdEiQFD 216 (400)
T COG1306 152 LAKENPFKIAVYKDGKPWK---------AFTNGALRKESDGEHW-----VDAYDKNLWEYNVTIAKEAA-KFGFDEIQFD 216 (400)
T ss_pred EEeecCceEEEEcCCCcch---------hhhcccccccccceee-----ecccchhhhhhhHHHHHHHH-HcCccceeee
Confidence 0000000000011111221 111100 01111111 55667999999999999998 8999999999
Q ss_pred ccc
Q 002585 680 FVR 682 (904)
Q Consensus 680 ~a~ 682 (904)
-+.
T Consensus 217 YIR 219 (400)
T COG1306 217 YIR 219 (400)
T ss_pred EEE
Confidence 874
No 168
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=40.00 E-value=72 Score=33.61 Aligned_cols=44 Identities=25% Similarity=0.357 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEE
Q 002585 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKI 590 (904)
Q Consensus 529 I~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkV 590 (904)
+...+..|+++|++.|-..|+ .| +-..+||+++.++|-++||.+
T Consensus 137 vetAiaml~dmG~~SiKffPm------~G------------l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFFPM------GG------------LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHHHTT--EEEE---------TT------------TTTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHHcCCCeeeEeec------CC------------cccHHHHHHHHHHHHHcCcee
Confidence 677789999999999999887 22 235789999999999999987
No 169
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=39.94 E-value=47 Score=38.00 Aligned_cols=63 Identities=19% Similarity=0.164 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEeeccccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRC 600 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIk-VILD~V~NHt~ 600 (904)
.++|+.|+++|++.|.+.- ...+..-...+.- -.+.++..+.|+.+++.|+. |-+|++++.-+
T Consensus 103 ~e~l~~lk~~G~nrisiGv-------QS~~d~vL~~l~R-~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPg 166 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGV-------QSMNNNILKQLNR-THTIQDSKEAINLLHKNGIYNISCDFLYCLPI 166 (353)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCCHHHHHHcCC-CCCHHHHHHHHHHHHHcCCCcEEEEEeecCCC
Confidence 5889999999999998753 1222222223333 35788999999999999997 99999997654
No 170
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=39.58 E-value=55 Score=40.06 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 002585 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 595 (904)
Q Consensus 529 I~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V 595 (904)
..++|...|++|+|+|+.- +|-+. |--.+.-| .|.+.-||.+||++||+.|+.|+|=+=
T Consensus 51 W~~~i~k~k~~Gln~IqtY-VfWn~--Hep~~g~y-----~FsG~~DlvkFikl~~~~GLyv~LRiG 109 (649)
T KOG0496|consen 51 WPDLIKKAKAGGLNVIQTY-VFWNL--HEPSPGKY-----DFSGRYDLVKFIKLIHKAGLYVILRIG 109 (649)
T ss_pred hHHHHHHHHhcCCceeeee-eeccc--ccCCCCcc-----cccchhHHHHHHHHHHHCCeEEEecCC
Confidence 4667788899999999853 32221 11111111 467888999999999999999999764
No 171
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=38.62 E-value=29 Score=38.59 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEEee
Q 002585 572 NIDELKDVVNKFHDVGMKILGDVV 595 (904)
Q Consensus 572 t~edlk~LV~aAH~~GIkVILD~V 595 (904)
+.++++++.+-||++||+|.||+.
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CHHHHHHHHHHHHhCceEEEEehh
Confidence 478999999999999999999985
No 172
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=38.24 E-value=61 Score=35.17 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCCEEEeCCCcCCCCCC-CCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 002585 529 LKEKATELSSLGFSVIWLPPPTESVSPE-GYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (904)
Q Consensus 529 I~ekLdYLk~LGVnaI~L~PIfes~s~h-GYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVIL 592 (904)
+.+.++.++++|+++|.|.+.. .+ ...+.++ +.+++++|.+.+.++||+|..
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~~----~~~~~~~~~~--------~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVDE----SDERLARLDW--------SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecCC----cccccccccC--------CHHHHHHHHHHHHHcCCCceE
Confidence 6788899999999999996421 01 0111111 457789999999999999873
No 173
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=38.22 E-value=55 Score=38.76 Aligned_cols=64 Identities=13% Similarity=0.166 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEeecccccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCA 601 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIk-VILD~V~NHt~~ 601 (904)
.+.|..|+++|++.|.|.. ...+..-...++. -.+.++..+.++.+++.|++ |-+|+.++.-+.
T Consensus 151 ~e~l~~lk~~G~~risiGv-------qS~~~~~l~~l~r-~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGV-------QDFNKEVQQAVNR-IQPEEMIFELMNHAREAGFTSINIDLIYGLPKQ 215 (455)
T ss_pred HHHHHHHHHcCCCEEEEcC-------CCCCHHHHHHhCC-CCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCC
Confidence 5789999999999999864 2222222233433 35788899999999999997 779999876554
No 174
>PRK13561 putative diguanylate cyclase; Provisional
Probab=37.81 E-value=46 Score=40.96 Aligned_cols=72 Identities=8% Similarity=0.088 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcCCC---CCC------CCCcccCCCcCCCC-----CCHHHHHHHHHHHHHcCCE
Q 002585 524 RWYMELKEKATELSSLGFSVIWLPPPTESV---SPE------GYMPRDLYNLSSRY-----GNIDELKDVVNKFHDVGMK 589 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~---s~h------GYd~~Dy~~IDp~l-----Gt~edlk~LV~aAH~~GIk 589 (904)
.+...+.+.+..|+++||..-. - .++ ++- ..-+.||-+||..| .+..-++.+|..||..||+
T Consensus 531 ~~~~~~~~~~~~l~~~G~~i~l-d---dfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~ 606 (651)
T PRK13561 531 DDPHAAVAILRPLRNAGVRVAL-D---DFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQ 606 (651)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-E---CCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCc
Confidence 4677889999999999997553 1 111 111 12367888888554 3456799999999999999
Q ss_pred EEEEeecccc
Q 002585 590 ILGDVVLNHR 599 (904)
Q Consensus 590 VILD~V~NHt 599 (904)
||..+|=+.-
T Consensus 607 viAegVE~~~ 616 (651)
T PRK13561 607 VIAEGVETEA 616 (651)
T ss_pred EEEecCCCHH
Confidence 9999987643
No 175
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=37.73 E-value=3e+02 Score=30.16 Aligned_cols=91 Identities=13% Similarity=0.153 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCCC
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGV 609 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~~~~~~~g~ 609 (904)
++.|+...+.||+.|.+.= ..-..+..+.+|+.|+++|++|.+-+..-+..
T Consensus 85 ~~~l~~a~~~gv~~iri~~--------------------~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~--------- 135 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAF--------------------HKHEFDEALPLIKAIKEKGYEVFFNLMAISGY--------- 135 (266)
T ss_pred HHHHHHHhcCCcCEEEEec--------------------ccccHHHHHHHHHHHHHCCCeEEEEEEeecCC---------
Confidence 4556677889999887631 01157889999999999999887665542110
Q ss_pred cccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEe-ccccccccch
Q 002585 610 WNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL-DFVRGFWGGY 688 (904)
Q Consensus 610 ~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRl-D~a~~~~~~f 688 (904)
+ .+++.+.++... ++|+|.+++ |.+..+.++-
T Consensus 136 -------------------------------------------~---~~~~~~~~~~~~-~~g~~~i~l~DT~G~~~P~~ 168 (266)
T cd07944 136 -------------------------------------------S---DEELLELLELVN-EIKPDVFYIVDSFGSMYPED 168 (266)
T ss_pred -------------------------------------------C---HHHHHHHHHHHH-hCCCCEEEEecCCCCCCHHH
Confidence 0 356677777766 799999998 7777777665
Q ss_pred HHHHHHhc
Q 002585 689 VKDYLEAT 696 (904)
Q Consensus 689 ~~~~~~~~ 696 (904)
+.++++++
T Consensus 169 v~~lv~~l 176 (266)
T cd07944 169 IKRIISLL 176 (266)
T ss_pred HHHHHHHH
Confidence 66655544
No 176
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=37.69 E-value=2.2e+02 Score=32.85 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 002585 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (904)
Q Consensus 573 ~edlk~LV~aAH~~GIkVILD~V~NHt~~~~ 603 (904)
.+.||+|++++|++|-+|++=+. |.|...
T Consensus 82 i~~~~~l~~~vh~~G~~i~~QL~--H~G~~~ 110 (370)
T cd02929 82 IRNLAAMTDAVHKHGALAGIELW--HGGAHA 110 (370)
T ss_pred HHHHHHHHHHHHHCCCeEEEecc--cCCCCC
Confidence 57899999999999999988765 888643
No 177
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.49 E-value=7e+02 Score=28.77 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCC---HHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 002585 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN---IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (904)
Q Consensus 527 ~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt---~edlk~LV~aAH~~GIkVILD~V~NHt~~~~ 603 (904)
+..++.....++=|+..|..-...-+....+..+. .+.+-+ .+.||+|++++|++|=++++=+ +|.|...
T Consensus 33 ~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~-----~~~~~~d~~i~~~~~l~d~vh~~Ga~i~~QL--~H~Gr~~ 105 (361)
T cd04747 33 QDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPN-----VPRFHGEDALAGWKKVVDEVHAAGGKIAPQL--WHVGAMR 105 (361)
T ss_pred HHHHHHHHHHhcCCccEEEecceEeccccccCCCC-----CCccCCHHHHHHHHHHHHHHHhcCCEEEEec--cCCCCCc
Confidence 34455555556667777766433332111110000 011222 4689999999999999988876 7877643
No 178
>PLN02801 beta-amylase
Probab=37.43 E-value=76 Score=37.84 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeC---CCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 002585 525 WYMELKEKATELSSLGFSVIWLP---PPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~---PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~ 601 (904)
+-+++...|..||.+||++|-+- -|.|..+...|+- ...++|++.+++.|+||..=+-|..||.
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdW-------------sgY~~l~~mvr~~GLKlq~vmSFHqCGG 101 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDW-------------SAYRSLFELVQSFGLKIQAIMSFHQCGG 101 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCc-------------HHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 46789999999999999999753 2334444455554 4568899999999999999999988775
Q ss_pred c
Q 002585 602 H 602 (904)
Q Consensus 602 ~ 602 (904)
+
T Consensus 102 N 102 (517)
T PLN02801 102 N 102 (517)
T ss_pred C
Confidence 4
No 179
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=37.37 E-value=61 Score=36.96 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEeeccccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRC 600 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIk-VILD~V~NHt~ 600 (904)
.++|..|+++|||.|-|.. ...+......+ -+-.+.++..+.|+.+++.|+. |-+|++++.-+
T Consensus 98 ~e~l~~l~~~GvnRiSiGv-------QS~~~~~L~~l-gR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGV-------QSFNEDKLKFL-GRIHSQKQIIKAIENAKKAGFENISIDLIYDTPL 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCCHHHHHHc-CCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 5899999999999998753 22222223333 2345688899999999999996 66999997554
No 180
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=37.10 E-value=62 Score=38.44 Aligned_cols=60 Identities=18% Similarity=0.319 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~N 597 (904)
.+.|+.+++.|++.|.+.. |+.+. .-...++... +.++..+.++.+|+.||.|..++++.
T Consensus 287 ~e~l~~l~~aG~~~v~iGi--ES~s~-----~~L~~~~K~~-~~~~~~~~i~~~~~~Gi~v~~~~IiG 346 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGY--ESGDQ-----QILKNIKKGL-TVEIARRFTRDCHKLGIKVHGTFILG 346 (472)
T ss_pred HHHHHHHHHcCCCEEEEcC--CCCCH-----HHHHHhcCCC-CHHHHHHHHHHHHHCCCeEEEEEEEe
Confidence 5678999999999998653 33321 1122233222 67889999999999999999999984
No 181
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=37.02 E-value=3.2e+02 Score=31.64 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccc-ccc
Q 002585 573 IDELKDVVNKFHDVGMKILGDVVLNHR-CAH 602 (904)
Q Consensus 573 ~edlk~LV~aAH~~GIkVILD~V~NHt-~~~ 602 (904)
.+.||+|++++|++|-++++=+ +|. ++.
T Consensus 82 i~~~k~l~davh~~G~~i~~QL--~H~~Gr~ 110 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQL--TAGFGRV 110 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEc--cCcCCCc
Confidence 4679999999999999999665 676 654
No 182
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=36.98 E-value=1e+02 Score=34.51 Aligned_cols=67 Identities=21% Similarity=0.225 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCC---CCHHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 002585 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRY---GNIDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (904)
Q Consensus 529 I~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~l---Gt~edlk~LV~aAH~~GIkVILD~V~NHt~~~~ 603 (904)
.++.....++=|+.-|..-...-+....+| .-.+.+ ...+.+|++++++|++|-++++=+ +|.|...
T Consensus 35 ~~~~y~~ra~gg~glii~e~~~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql--~h~G~~~ 104 (327)
T cd02803 35 LIEYYEERAKGGVGLIITEAAYVDPEGKGY------PGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQL--AHAGRQA 104 (327)
T ss_pred HHHHHHHHhCcCCcEEEECcEEEcCcccCC------CCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHh--hCCCcCC
Confidence 344444445557777765544433322221 111111 135789999999999999987554 7887654
No 183
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=36.67 E-value=46 Score=29.76 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=14.2
Q ss_pred eeCCCEEEEEE--CC-EEEEEEeCCCCC
Q 002585 853 KAERDVYAAII--DE-KVAMKLGPGHYE 877 (904)
Q Consensus 853 ~~~~~v~a~~r--~~-~vlvvlnn~~~~ 877 (904)
...+++|+|.| ++ .++|++|+.+.+
T Consensus 6 ~P~~gvYvYfR~~~~~tVmVilN~n~~~ 33 (78)
T PF10438_consen 6 APQDGVYVYFRYYDGKTVMVILNKNDKE 33 (78)
T ss_dssp --BTTEEEEEEEESSEEEEEEEE-SSS-
T ss_pred CccCCEEEEEEEcCCCEEEEEEcCCCCC
Confidence 34678999988 44 555555555433
No 184
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=35.53 E-value=68 Score=37.95 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCC-EEEEEeecccccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM-KILGDVVLNHRCA 601 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GI-kVILD~V~NHt~~ 601 (904)
.++|..|+++|++.|.|.. ...+..-...+. +..+.++..+.++.+++.|| .|-+|+.++.-+.
T Consensus 151 ~e~l~~l~~aG~~risiGv-------qS~~~~~L~~l~-r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (453)
T PRK09249 151 LEMLDALRELGFNRLSLGV-------QDFDPEVQKAVN-RIQPFEFTFALVEAARELGFTSINIDLIYGLPKQ 215 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-------CCCCHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCC
Confidence 5889999999999998864 222222223333 23588899999999999999 8999999976553
No 185
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=34.99 E-value=57 Score=32.27 Aligned_cols=64 Identities=11% Similarity=0.145 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~ 600 (904)
.+.++.|+++|+..|+++- ...+...+..+...-++.++..+.|+.++++|+.|...+++..-.
T Consensus 88 ~~~~~~l~~~g~~~i~i~l-------e~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~ 151 (204)
T cd01335 88 EELLKELKELGLDGVGVSL-------DSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGD 151 (204)
T ss_pred HHHHHHHHhCCCceEEEEc-------ccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecCC
Confidence 5667888888999998874 222222233333456678899999999999999999999986443
No 186
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=34.65 E-value=62 Score=37.68 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEeeccccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRC 600 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIk-VILD~V~NHt~ 600 (904)
.++|..|+++|||.|.|-. .-.+..-...++. --+.++..+.++.+++.|+. |-+|+.++.=+
T Consensus 115 ~e~l~~l~~~GvnrislGv-------QS~~d~~L~~l~R-~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPg 178 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGV-------QAFQDELLALCGR-SHRVKDIFAAVDLIHQAGIENFSLDLISGLPH 178 (400)
T ss_pred HHHHHHHHHCCCCEEEEEc-------ccCCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCCeEEEEeecCCCC
Confidence 5789999999999999864 1122222233332 34778888899999999999 78999998554
No 187
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=34.52 E-value=1.1e+02 Score=30.99 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 002585 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~ 594 (904)
-|+.-+....+-|+++||..-- .-.|.|+ |++.+.+++++|+++|++||+=+
T Consensus 13 SD~~~mk~Aa~~L~~fgi~ye~-----~VvSAHR--------------TPe~m~~ya~~a~~~g~~viIAg 64 (162)
T COG0041 13 SDWDTMKKAAEILEEFGVPYEV-----RVVSAHR--------------TPEKMFEYAEEAEERGVKVIIAG 64 (162)
T ss_pred chHHHHHHHHHHHHHcCCCeEE-----EEEeccC--------------CHHHHHHHHHHHHHCCCeEEEec
Confidence 3677788888889999997532 0114455 89999999999999999999864
No 188
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=34.45 E-value=3.7e+02 Score=30.45 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 002585 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (904)
Q Consensus 573 ~edlk~LV~aAH~~GIkVILD~V~NHt~~~~ 603 (904)
.+.||+|++++|++|-++++=+ +|.|...
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql--~h~G~~~ 109 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQL--NHPGRQS 109 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEc--cCCCcCC
Confidence 5689999999999999998765 6877643
No 189
>PRK08114 cystathionine beta-lyase; Provisional
Probab=34.36 E-value=57 Score=38.03 Aligned_cols=71 Identities=17% Similarity=0.114 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCC----CCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcC--CEEEEEeec
Q 002585 523 GRWYMELKEKATELSSLGFSVIWLPPPTES----VSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVG--MKILGDVVL 596 (904)
Q Consensus 523 GGdl~GI~ekLdYLk~LGVnaI~L~PIfes----~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~G--IkVILD~V~ 596 (904)
|+++.-+. ..++..||+..++.|.-.. .-...-...-.-.+-...|...|++++++.||++| +.||+|-++
T Consensus 112 g~t~~l~~---~~l~~~Gi~v~~vd~~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~ 188 (395)
T PRK08114 112 EPTQDFCS---KILSKLGVTTTWFDPLIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTW 188 (395)
T ss_pred HHHHHHHH---HHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCC
Confidence 45544332 4678899999998763110 00111112222233345677789999999999985 999999887
No 190
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=34.00 E-value=69 Score=38.72 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~ 600 (904)
.++|+.|+++|++.|.|-.= + .++ .-...++. --+.++..+-++.+++.|++|.+|+.++-=+
T Consensus 206 ~e~L~~L~~~G~~rVslGVQ--S----~~d-~VL~~inR-ght~~~v~~Ai~~lr~~G~~v~~~LM~GLPg 268 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQ--T----IYN-DILERTKR-GHTVRDVVEATRLLRDAGLKVVYHIMPGLPG 268 (522)
T ss_pred HHHHHHHHHcCCCEEEEECc--c----CCH-HHHHHhCC-CCCHHHHHHHHHHHHHcCCeEEEEeecCCCC
Confidence 58899999999999998751 1 111 11222322 2367788888999999999999999997544
No 191
>TIGR03586 PseI pseudaminic acid synthase.
Probab=33.99 E-value=98 Score=35.17 Aligned_cols=70 Identities=11% Similarity=0.170 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCC------CCCCCCccc-CCCcCCCCC-------CHHHHHHHHHHHHHcC
Q 002585 522 SGRWYMELKEKATELSSLGFSVIWLPPPTESV------SPEGYMPRD-LYNLSSRYG-------NIDELKDVVNKFHDVG 587 (904)
Q Consensus 522 ~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~------s~hGYd~~D-y~~IDp~lG-------t~edlk~LV~aAH~~G 587 (904)
|.|+++-..+.++..++.|.++|=+-= |... ..-.|...+ .+.-.+.|. +.+++++|.+.|++.|
T Consensus 12 H~G~~~~A~~lI~~A~~aGAdavKFQ~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~G 90 (327)
T TIGR03586 12 HNGSLERALAMIEAAKAAGADAIKLQT-YTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELG 90 (327)
T ss_pred CCChHHHHHHHHHHHHHhCCCEEEeee-ccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhC
Confidence 679999999999999999999986542 1111 001111110 111011111 3578899999999999
Q ss_pred CEEEE
Q 002585 588 MKILG 592 (904)
Q Consensus 588 IkVIL 592 (904)
|.++-
T Consensus 91 i~~~s 95 (327)
T TIGR03586 91 LTIFS 95 (327)
T ss_pred CcEEE
Confidence 98874
No 192
>PRK01060 endonuclease IV; Provisional
Probab=33.72 E-value=73 Score=34.64 Aligned_cols=51 Identities=10% Similarity=0.154 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEE
Q 002585 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKI 590 (904)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkV 590 (904)
++.+.|+.++++|+++|.|.+-- .+.+ .+..-+.+++++|-+.+.++||+|
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~----p~~~--------~~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGN----PQQW--------KRKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCC----CCCC--------cCCCCCHHHHHHHHHHHHHcCCCC
Confidence 37788899999999999986421 1111 122237888999999999999995
No 193
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=33.66 E-value=2.6e+02 Score=31.99 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 002585 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (904)
Q Consensus 573 ~edlk~LV~aAH~~GIkVILD~V~NHt~~~~ 603 (904)
.+.+|+|++++|++|-+|+ +=++|.|...
T Consensus 77 i~~~~~l~~~vh~~G~~i~--~QL~h~G~~~ 105 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAI--LQIFHAGRMA 105 (353)
T ss_pred hHHHHHHHHHHHhCCCeEE--EEecCCCCCC
Confidence 5789999999999999988 5568887653
No 194
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=33.57 E-value=72 Score=36.72 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCC----CCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 002585 522 SGRWYMELKEKATELSSLGFSVIWLPPPTESV----SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (904)
Q Consensus 522 ~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~----s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~ 596 (904)
+||++.-+.- -|+.+||++.++-|.-... -+..=-..-.-.|--.=++.-|+.++.+-||++|+-+|+|=.|
T Consensus 111 YGGT~~lf~~---tl~~~Gi~v~fvd~~d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~ 186 (426)
T COG2873 111 YGGTYNLFSH---TLKRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTF 186 (426)
T ss_pred cCchHHHHHH---HHHhcCcEEEEeCCCCHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCC
Confidence 4777653322 2699999999998753111 0000000000011111122346899999999999999999554
No 195
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=33.51 E-value=67 Score=36.89 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEeecccccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCA 601 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIk-VILD~V~NHt~~ 601 (904)
.+.|..|+++|++.|.+.. ...+..-+..+. +-.+.++..+.|+.+++.|+. |-+|+.++.-+.
T Consensus 100 ~e~l~~l~~~G~~rvsiGv-------qS~~~~~l~~l~-r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgq 164 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGV-------QTFNDELLKKIG-RTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQ 164 (377)
T ss_pred HHHHHHHHHcCCCEEEEec-------ccCCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCC
Confidence 5889999999999998864 222222233333 345688999999999999998 678999876553
No 196
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=33.31 E-value=4.4e+02 Score=29.71 Aligned_cols=106 Identities=16% Similarity=0.180 Sum_probs=58.7
Q ss_pred eeecccccCCCCCC--CHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCC
Q 002585 511 LCQGFNWESHKSGR--WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM 588 (904)
Q Consensus 511 ~~~~F~Wd~~~~GG--dl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GI 588 (904)
++.||. |- +.+.=.+.+..+++.|.|+=.--| +...+|+-.-.+.|--+ ..++|++||++|++.||
T Consensus 3 vIEGFY------G~PWs~e~R~~l~~f~~~~kmN~YiYAP--KdDpyhr~~Wre~Yp~~----el~~l~~L~~~a~~~~V 70 (306)
T PF07555_consen 3 VIEGFY------GRPWSHEDRLDLIRFLGRYKMNTYIYAP--KDDPYHRSKWREPYPEE----ELAELKELADAAKANGV 70 (306)
T ss_dssp EEE-SS------SS---HHHHHHHHHHHHHTT--EEEE----TT-TTTTTTTTS---HH----HHHHHHHHHHHHHHTT-
T ss_pred ceeCcC------CCCCCHHHHHHHHHHHHHcCCceEEECC--CCChHHHhhhcccCCHH----HHHHHHHHHHHHHHcCC
Confidence 566775 21 356667777889999999766554 12223332222222211 35789999999999999
Q ss_pred EEEEEeecccccccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHH
Q 002585 589 KILGDVVLNHRCAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLR 668 (904)
Q Consensus 589 kVILD~V~NHt~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi 668 (904)
+.+.=+-+-. ++.+++++..+.|+.-+....
T Consensus 71 ~Fv~aisPg~-------------------------------------------------~~~~s~~~d~~~L~~K~~ql~ 101 (306)
T PF07555_consen 71 DFVYAISPGL-------------------------------------------------DICYSSEEDFEALKAKFDQLY 101 (306)
T ss_dssp EEEEEEBGTT-------------------------------------------------T--TSHHHHHHHHHHHHHHHH
T ss_pred EEEEEECccc-------------------------------------------------ccccCcHHHHHHHHHHHHHHH
Confidence 8876443310 122334566677777777777
Q ss_pred hccCccEEEe
Q 002585 669 NEIGYDGWRL 678 (904)
Q Consensus 669 ~e~GIDGfRl 678 (904)
+.||+-|-|
T Consensus 102 -~lGvr~Fai 110 (306)
T PF07555_consen 102 -DLGVRSFAI 110 (306)
T ss_dssp -CTT--EEEE
T ss_pred -hcCCCEEEE
Confidence 899999877
No 197
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=33.29 E-value=5.9e+02 Score=28.96 Aligned_cols=69 Identities=14% Similarity=0.039 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCC---HHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 002585 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN---IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (904)
Q Consensus 527 ~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt---~edlk~LV~aAH~~GIkVILD~V~NHt~~~~ 603 (904)
...++.....++=|+..|..-.++-++...+| +. .+.+-+ .+.|++|++++|++|-++++ =++|.|...
T Consensus 33 ~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~-~~-----~~~l~~d~~i~~~~~l~~~vh~~g~~~~~--Ql~H~G~~~ 104 (343)
T cd04734 33 ERYIAYHEERARGGAGLIITEGSSVHPSDSPA-FG-----NLNASDDEIIPGFRRLAEAVHAHGAVIMI--QLTHLGRRG 104 (343)
T ss_pred HHHHHHHHHHHhCCCCEEEEeeeeeCCcccCC-CC-----ccccCCHHHHHHHHHHHHHHHhcCCeEEE--eccCCCcCc
Confidence 34556666667778888866554444332221 11 122223 45899999999999999988 567877544
No 198
>PTZ00445 p36-lilke protein; Provisional
Probab=33.26 E-value=93 Score=33.20 Aligned_cols=60 Identities=20% Similarity=0.188 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCCEEEe------CCCcCCCCCCCCCcccCCCcCCCCCC--HHHHHHHHHHHHHcCCEEEE
Q 002585 527 MELKEKATELSSLGFSVIWL------PPPTESVSPEGYMPRDLYNLSSRYGN--IDELKDVVNKFHDVGMKILG 592 (904)
Q Consensus 527 ~GI~ekLdYLk~LGVnaI~L------~PIfes~s~hGYd~~Dy~~IDp~lGt--~edlk~LV~aAH~~GIkVIL 592 (904)
+.+-.-.+.|++.||.+|-+ .++. ..||+-.+ +-+..+++ ..+|++|++++++.||+|++
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D~DnTlI~~H----sgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASDFDLTMITKH----SGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEecchhhhhhhh----cccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 34444457899999999964 1211 13444332 23333433 35699999999999999975
No 199
>PRK05967 cystathionine beta-lyase; Provisional
Probab=32.95 E-value=62 Score=37.72 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 002585 569 RYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (904)
Q Consensus 569 ~lGt~edlk~LV~aAH~~GIkVILD~V~N 597 (904)
..++..|++++++.||++|+-||+|-++.
T Consensus 161 P~l~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 161 NTFEMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred CCCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 36899999999999999999999999985
No 200
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=32.86 E-value=3.5e+02 Score=30.86 Aligned_cols=102 Identities=16% Similarity=0.193 Sum_probs=68.5
Q ss_pred HHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCCCc
Q 002585 531 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVW 610 (904)
Q Consensus 531 ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~~~~~~~g~~ 610 (904)
+.|+-..+.|++.|-+.= +....+..++.|+.|+++|++|.+-+..-|...
T Consensus 92 ~dl~~a~~~gvd~iri~~--------------------~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~--------- 142 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVAT--------------------HCTEADVSEQHIGLARELGMDTVGFLMMSHMAP--------- 142 (337)
T ss_pred HHHHHHHHcCCCEEEEEE--------------------ecchHHHHHHHHHHHHHCCCeEEEEEEeccCCC---------
Confidence 345667788999887530 111235789999999999999877665432210
Q ss_pred ccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEe-ccccccccchH
Q 002585 611 NIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL-DFVRGFWGGYV 689 (904)
Q Consensus 611 ~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRl-D~a~~~~~~f~ 689 (904)
.+++.+.++... ++|+|.+++ |.+..+.++.+
T Consensus 143 ----------------------------------------------~e~l~~~a~~~~-~~Ga~~i~i~DT~G~~~P~~v 175 (337)
T PRK08195 143 ----------------------------------------------PEKLAEQAKLME-SYGAQCVYVVDSAGALLPEDV 175 (337)
T ss_pred ----------------------------------------------HHHHHHHHHHHH-hCCCCEEEeCCCCCCCCHHHH
Confidence 266777777776 899999997 88877777666
Q ss_pred HHHHHhc----CCCEEEEeecCC
Q 002585 690 KDYLEAT----EPYFAVGEYWDS 708 (904)
Q Consensus 690 ~~~~~~~----~p~~liGE~w~~ 708 (904)
.++++++ +|+.-+|=+.++
T Consensus 176 ~~~v~~l~~~l~~~i~ig~H~Hn 198 (337)
T PRK08195 176 RDRVRALRAALKPDTQVGFHGHN 198 (337)
T ss_pred HHHHHHHHHhcCCCCeEEEEeCC
Confidence 6555443 455556655554
No 201
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=32.57 E-value=79 Score=34.71 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 002585 531 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (904)
Q Consensus 531 ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NH 598 (904)
+.+..+.+-.+..|++.++... .| .+=+.+++++|++.||++|+.||+|.++..
T Consensus 123 ~~~~~~~~~~~~~v~i~~~~~~---tG-----------~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~ 176 (350)
T cd00609 123 ELLEAAKTPKTKLLYLNNPNNP---TG-----------AVLSEEELEELAELAKKHGILIISDEAYAE 176 (350)
T ss_pred HHHHhhcCccceEEEEECCCCC---CC-----------cccCHHHHHHHHHHHHhCCeEEEEecchhh
Confidence 3444445556777777663211 11 112568899999999999999999998754
No 202
>PLN02905 beta-amylase
Probab=32.53 E-value=1.1e+02 Score=37.58 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCC---CcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 002585 525 WYMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~P---Ifes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~ 601 (904)
+.+++...|..||.+||+.|-+-= |.|..+...|+- ...++|++.+++.|+||..=+-|.-||.
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdW-------------sgY~~L~~mvr~~GLKlqvVMSFHqCGG 350 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNW-------------NGYKRLFQMVRELKLKLQVVMSFHECGG 350 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCc-------------HHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 567899999999999999996532 333334445554 4568899999999999999999988876
Q ss_pred c
Q 002585 602 H 602 (904)
Q Consensus 602 ~ 602 (904)
+
T Consensus 351 N 351 (702)
T PLN02905 351 N 351 (702)
T ss_pred C
Confidence 4
No 203
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=32.48 E-value=4e+02 Score=29.18 Aligned_cols=63 Identities=21% Similarity=0.093 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 002585 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~ 600 (904)
.++..+...++||++-|..-|.|+= ....+|... +.-+. +|+.+..-.+.-++-||+|.- |++
T Consensus 133 ~t~~e~~~A~e~i~~~Gn~~i~L~e----Rg~~~Y~~~--~~n~~------dl~ai~~lk~~~~lPVivd~S--Hs~ 195 (250)
T PRK13397 133 ATIEEYLGALSYLQDTGKSNIILCE----RGVRGYDVE--TRNML------DIMAVPIIQQKTDLPIIVDVS--HST 195 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEc----cccCCCCCc--ccccc------CHHHHHHHHHHhCCCeEECCC--CCC
Confidence 5899999999999999998787762 011344422 11112 244443333446799999987 775
No 204
>PLN00197 beta-amylase; Provisional
Probab=32.44 E-value=1e+02 Score=37.11 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeC---CCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 002585 525 WYMELKEKATELSSLGFSVIWLP---PPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~---PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~ 601 (904)
+-+++...|..||.+||+.|-+- -|.|..+...|+- ...++|++.+++.|+||..=+-|.-||.
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdW-------------sgY~~L~~mvr~~GLKlq~VmSFHqCGG 191 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNW-------------GGYNELLEMAKRHGLKVQAVMSFHQCGG 191 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCc-------------HHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 45679999999999999999653 2334444455554 4568899999999999999999988875
Q ss_pred c
Q 002585 602 H 602 (904)
Q Consensus 602 ~ 602 (904)
+
T Consensus 192 N 192 (573)
T PLN00197 192 N 192 (573)
T ss_pred C
Confidence 3
No 205
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=32.16 E-value=4.8e+02 Score=28.31 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhccCccEEEe-ccccccccchHHHHHHhc
Q 002585 658 KDIKEWLCWLRNEIGYDGWRL-DFVRGFWGGYVKDYLEAT 696 (904)
Q Consensus 658 ~~i~~~l~~Wi~e~GIDGfRl-D~a~~~~~~f~~~~~~~~ 696 (904)
+++.+.++... +.|+|.+++ |.+..+.+.-+.++++.+
T Consensus 141 ~~~~~~~~~~~-~~G~d~i~l~DT~G~~~P~~v~~lv~~l 179 (263)
T cd07943 141 EELAEQAKLME-SYGADCVYVTDSAGAMLPDDVRERVRAL 179 (263)
T ss_pred HHHHHHHHHHH-HcCCCEEEEcCCCCCcCHHHHHHHHHHH
Confidence 66777777776 899999998 777777777666666654
No 206
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=31.96 E-value=79 Score=36.37 Aligned_cols=64 Identities=14% Similarity=0.116 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEeecccccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRCA 601 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIk-VILD~V~NHt~~ 601 (904)
.++|+.|+++|||.|.|.. .-.+..-...+.- --+.++..+-|+.|++.|+. |-+|++++.-+.
T Consensus 103 ~~~l~~l~~~G~nrislGv-------QS~~~~~L~~l~R-~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgq 167 (370)
T PRK06294 103 ESYIRALALTGINRISIGV-------QTFDDPLLKLLGR-THSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQ 167 (370)
T ss_pred HHHHHHHHHCCCCEEEEcc-------ccCCHHHHHHcCC-CCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 5789999999999998764 1112222233332 22577888889999999996 899999975543
No 207
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=31.90 E-value=1e+02 Score=33.26 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEE
Q 002585 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKIL 591 (904)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVI 591 (904)
-+.+.|+.++++|+++|.|.. ...|-|. +.+ +..++++|.+++.++||+|.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~----~~~~~~~--------~~~-~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWG----GRPHAFA--------PDL-KAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEcc----CCccccc--------ccc-CchHHHHHHHHHHHcCCeEE
Confidence 378899999999999999842 0111111 111 34678899999999999984
No 208
>PLN02389 biotin synthase
Probab=31.90 E-value=1e+02 Score=35.76 Aligned_cols=60 Identities=13% Similarity=0.241 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NH 598 (904)
.+.+..||+.|++.+.+ .++.. +.-|-.+-+. .+.++-.+.++.||+.||+|..=+++.|
T Consensus 178 ~E~l~~LkeAGld~~~~--~LeTs------~~~y~~i~~~-~s~e~rl~ti~~a~~~Gi~v~sg~IiGl 237 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNH--NLDTS------REYYPNVITT-RSYDDRLETLEAVREAGISVCSGGIIGL 237 (379)
T ss_pred HHHHHHHHHcCCCEEEe--eecCC------hHHhCCcCCC-CCHHHHHHHHHHHHHcCCeEeEEEEECC
Confidence 67889999999999865 22221 2234444432 2788889999999999999999999988
No 209
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=30.93 E-value=1.2e+02 Score=28.57 Aligned_cols=59 Identities=25% Similarity=0.329 Sum_probs=37.7
Q ss_pred HHHHHcCCCEEEeCCCcCCCC-CCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 002585 534 TELSSLGFSVIWLPPPTESVS-PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (904)
Q Consensus 534 dYLk~LGVnaI~L~PIfes~s-~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVIL 592 (904)
..+..+|+.++.+.+...... -......|..-+=..=|...++.++++.||++|++||.
T Consensus 20 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 20 ATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 455778999998866321110 01112223222225557788999999999999999875
No 210
>PLN02161 beta-amylase
Probab=30.92 E-value=1.2e+02 Score=36.20 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeC---CCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 002585 525 WYMELKEKATELSSLGFSVIWLP---PPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~---PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~ 601 (904)
+.+.+...|..||.+||+.|-+- -|.|..+...|+- .-.++|++.+++.|+||..=+-|..|+.
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdW-------------sgY~~l~~mvr~~GLKlq~vmSFHqCGG 181 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKW-------------SLYEELFRLISEAGLKLHVALCFHSNMH 181 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCc-------------HHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 56789999999999999999653 2334444455554 3568899999999999999999987765
Q ss_pred c
Q 002585 602 H 602 (904)
Q Consensus 602 ~ 602 (904)
.
T Consensus 182 N 182 (531)
T PLN02161 182 L 182 (531)
T ss_pred C
Confidence 3
No 211
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=30.86 E-value=1.3e+02 Score=34.60 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Q 002585 523 GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDV 594 (904)
Q Consensus 523 GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~ 594 (904)
.|++..+ ..+-+-|+++||+.=- +... .++. .+| +.++|++.|+.||++|.|+++=+
T Consensus 13 ag~l~~l----~~ai~~GADaVY~G~~-~~~~-R~~a-~nf--------s~~~l~e~i~~ah~~gkk~~V~~ 69 (347)
T COG0826 13 AGNLEDL----KAAIAAGADAVYIGEK-EFGL-RRRA-LNF--------SVEDLAEAVELAHSAGKKVYVAV 69 (347)
T ss_pred CCCHHHH----HHHHHcCCCEEEeCCc-cccc-cccc-ccC--------CHHHHHHHHHHHHHcCCeEEEEe
Confidence 4555544 4445568999998732 2221 1222 222 56789999999999999998644
No 212
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=30.10 E-value=77 Score=34.43 Aligned_cols=67 Identities=18% Similarity=0.326 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCC--------CcccCCCcCCCCCC--------HHHHHHHHHHHHHcCC
Q 002585 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGY--------MPRDLYNLSSRYGN--------IDELKDVVNKFHDVGM 588 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGY--------d~~Dy~~IDp~lGt--------~edlk~LV~aAH~~GI 588 (904)
+...+...+.+|+++||..- |= +++ -|| -+.|+-+||..|-. ..-++.+|+-||+.||
T Consensus 134 ~~~~~~~~l~~L~~~G~~ia-lD---DFG--tG~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~ 207 (256)
T COG2200 134 DLDTALALLRQLRELGVRIA-LD---DFG--TGYSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGL 207 (256)
T ss_pred CHHHHHHHHHHHHHCCCeEE-EE---CCC--CCHHHHHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCC
Confidence 45567777788888886432 21 111 222 25567777765532 3469999999999999
Q ss_pred EEEEEeecc
Q 002585 589 KILGDVVLN 597 (904)
Q Consensus 589 kVILD~V~N 597 (904)
+||..+|=+
T Consensus 208 ~vvaEGVEt 216 (256)
T COG2200 208 TVVAEGVET 216 (256)
T ss_pred EEEEeecCC
Confidence 999999865
No 213
>PLN02705 beta-amylase
Probab=30.02 E-value=1.1e+02 Score=37.29 Aligned_cols=65 Identities=11% Similarity=0.160 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCC---CcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 002585 525 WYMELKEKATELSSLGFSVIWLPP---PTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~P---Ifes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~ 601 (904)
+-+++...|..||.+||+.|-+-= |.|..+...|+- ...++|++.+++.|+||..=+-|.-||.
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdW-------------sgY~~L~~mvr~~GLKlqvVmSFHqCGG 332 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVW-------------SGYRELFNIIREFKLKLQVVMAFHEYGG 332 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCc-------------HHHHHHHHHHHHcCCeEEEEEEeeccCC
Confidence 467899999999999999996532 333334444544 4578899999999999999999987775
Q ss_pred c
Q 002585 602 H 602 (904)
Q Consensus 602 ~ 602 (904)
.
T Consensus 333 N 333 (681)
T PLN02705 333 N 333 (681)
T ss_pred C
Confidence 3
No 214
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=28.81 E-value=74 Score=30.81 Aligned_cols=60 Identities=10% Similarity=0.045 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCCcCCCCCC-----------CCCcccCCCcCCCCCCHHHHHHHHHHHHH
Q 002585 526 YMELKEKATELSSLGFSVIWLPPPTESVSPE-----------GYMPRDLYNLSSRYGNIDELKDVVNKFHD 585 (904)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s~h-----------GYd~~Dy~~IDp~lGt~edlk~LV~aAH~ 585 (904)
...+.+.|+.|.+.|++.|.+.|.+-.++-| .|.-....--.|-+.+.+|+++++++.++
T Consensus 55 ~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e~~di~~~v~~~~~~~~~i~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 55 VDTPEEALAKLAADGYTEVIVQSLHIIPGEEYEKLKREVDAFKKGFKKIKLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCeeECcHHHHHHHHHHHHHhCCCceEEEccCCCCCHHHHHHHHHHHHh
Confidence 3457888999999999999999998887322 11111111223666678888888887764
No 215
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=28.70 E-value=2.2e+02 Score=32.33 Aligned_cols=61 Identities=10% Similarity=0.164 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~N 597 (904)
.+.++.|++.|++.|.++= .|.++..+..+-..-|+-+...+.|+.+++.|++|.+-+|++
T Consensus 95 ~e~~~~L~~~g~~~v~iSl-------dg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv~ 155 (358)
T TIGR02109 95 EARLDALADAGLDHVQLSF-------QGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVIH 155 (358)
T ss_pred HHHHHHHHhCCCCEEEEeC-------cCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEec
Confidence 3567888999999998762 444433233332223445556667788899999988777663
No 216
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=28.63 E-value=1.1e+02 Score=32.80 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCE
Q 002585 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK 589 (904)
Q Consensus 527 ~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIk 589 (904)
--+...+..|+++|.+.|-..|+- | +-..+||+++.++|-++|+.
T Consensus 135 V~vetAiaml~dmG~~SiKffPM~------G------------l~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPMG------G------------LKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeecC------C------------cccHHHHHHHHHHHHHcCCc
Confidence 346778899999999999988872 2 22356777777777777765
No 217
>PRK10060 RNase II stability modulator; Provisional
Probab=28.49 E-value=55 Score=40.67 Aligned_cols=72 Identities=14% Similarity=0.135 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcCCC------CCCCCCcccCCCcCCCC--------CCHHHHHHHHHHHHHcCCE
Q 002585 524 RWYMELKEKATELSSLGFSVIWLPPPTESV------SPEGYMPRDLYNLSSRY--------GNIDELKDVVNKFHDVGMK 589 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~------s~hGYd~~Dy~~IDp~l--------Gt~edlk~LV~aAH~~GIk 589 (904)
.+...+.+.+..|+++||..-. - .++ ++-..-+.|+-+||..| ....-++.+|..||+.||+
T Consensus 538 ~~~~~~~~~l~~L~~~G~~ial-D---dfGtg~ssl~~L~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~ 613 (663)
T PRK10060 538 ENEELALSVIQQFSQLGAQVHL-D---DFGTGYSSLSQLARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQ 613 (663)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-E---CCCCchhhHHHHHhCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCc
Confidence 4577889999999999997543 1 111 11112367888888654 2345689999999999999
Q ss_pred EEEEeecccc
Q 002585 590 ILGDVVLNHR 599 (904)
Q Consensus 590 VILD~V~NHt 599 (904)
||.++|=+.-
T Consensus 614 viAeGVEt~~ 623 (663)
T PRK10060 614 VIAEGVETAK 623 (663)
T ss_pred EEEecCCCHH
Confidence 9999987643
No 218
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=28.42 E-value=1.3e+02 Score=34.35 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCCeeeeec-CCh
Q 002585 803 MQGYAYILTHPGTPSVFY-DHI 823 (904)
Q Consensus 803 klA~allltlPGiP~IYy-GdE 823 (904)
...|-++...+|||.+|| |+|
T Consensus 74 Yr~YKlL~g~~GIP~vYYFGqe 95 (449)
T KOG1165|consen 74 YRTYKLLGGTEGIPQVYYFGQE 95 (449)
T ss_pred HHHHHHHcCCCCCCceeeeccc
Confidence 445667778899999998 765
No 219
>PRK12928 lipoyl synthase; Provisional
Probab=28.03 E-value=1.9e+02 Score=32.22 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 002585 523 GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (904)
Q Consensus 523 GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~N 597 (904)
|=+...+.+.|+.|+++|++.|.+.+...... ..+-+ .+|=++++|+++-+.|.+.|.+-+.-..+=
T Consensus 215 GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~-~~~~v-------~~~~~~~~f~~~~~~~~~~g~~~~~~~p~~ 281 (290)
T PRK12928 215 GETEDEVIETLRDLRAVGCDRLTIGQYLRPSL-AHLPV-------QRYWTPEEFEALGQIARELGFSHVRSGPLV 281 (290)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCc-cCCce-------eeccCHHHHHHHHHHHHHcCCceeEecCcc
Confidence 55899999999999999999998877543222 12222 356689999999999999998877665553
No 220
>PF03714 PUD: Bacterial pullanase-associated domain; InterPro: IPR005323 Domain is found in pullanase - carbohydrate de-branching - proteins. It is found both to the N or the C-termini of of the alpha-amylase active site region. This domain contains several conserved aromatic residues that are suggestive of a carbohydrate binding function.; GO: 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2J43_A 2J44_A 2YA1_A 2FHC_A 2FHB_A 2FHF_A 2J73_B 2J72_A 2J71_A.
Probab=28.00 E-value=1e+02 Score=28.66 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=28.7
Q ss_pred eEEEEeecCCCCceEEEEEEEeCCcchhhhcCCcceeEeCCc
Q 002585 174 DQVNIDFDTRSDIAAINFVLKDEETGAWYQHRGRDFKVPLVD 215 (904)
Q Consensus 174 ~~~~i~~~~~~~~~~~~Fvl~~~~~~~W~~~~g~df~v~l~~ 215 (904)
.+...+|++......|+|+++.+.. |+.++|..|++..
T Consensus 45 ~G~~~~i~~~~~~~~igfIv~~~~~----kd~~~D~~i~~~~ 82 (103)
T PF03714_consen 45 FGAYADIPLKGGASKIGFIVRKGDW----KDQGGDRFIDLTS 82 (103)
T ss_dssp TEEEEEEEBSTSSSEEEEEEEETTE----ECSSSEEEEETTT
T ss_pred CceEEEEEeCCCCCEEEEEEEcCCC----CCCCCCEEEEecc
Confidence 3345555556666779999999855 7899999999954
No 221
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=27.58 E-value=86 Score=31.53 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=36.7
Q ss_pred HHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 002585 534 TELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (904)
Q Consensus 534 dYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~N 597 (904)
--|+.||+.+..+. .|+..++...-..+.+.++++.|++.|++|++|....
T Consensus 44 ~~l~~LG~~~~~~~-------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~ 94 (196)
T cd00287 44 VALARLGVSVTLVG-------------ADAVVISGLSPAPEAVLDALEEARRRGVPVVLDPGPR 94 (196)
T ss_pred HHHHHCCCcEEEEE-------------ccEEEEecccCcHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 34677898887777 3444444322224788999999999999999999753
No 222
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=27.24 E-value=1.1e+02 Score=32.37 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEE-----EeCCCcCCC-----------CCCCCCcccCCCcCCCCCCHHHHHHHHHHHHH
Q 002585 522 SGRWYMELKEKATELSSLGFSVI-----WLPPPTESV-----------SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHD 585 (904)
Q Consensus 522 ~GGdl~GI~ekLdYLk~LGVnaI-----~L~PIfes~-----------s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~ 585 (904)
.|-+|..+++.+.....-|+++= |-+||+..+ ..||+-+.|. .+|+-..|-.+|++
T Consensus 75 ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDl--------PpEEa~~~Rne~~k 146 (268)
T KOG4175|consen 75 NGTTLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDL--------PPEEAETLRNEARK 146 (268)
T ss_pred cCCcHHHHHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccC--------ChHHHHHHHHHHHh
Confidence 36789999999999999999973 335776654 3466555553 46777888899999
Q ss_pred cCCEEEEEeec
Q 002585 586 VGMKILGDVVL 596 (904)
Q Consensus 586 ~GIkVILD~V~ 596 (904)
+||.+|.=+.+
T Consensus 147 ~gislvpLvaP 157 (268)
T KOG4175|consen 147 HGISLVPLVAP 157 (268)
T ss_pred cCceEEEeeCC
Confidence 99998875544
No 223
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=26.94 E-value=5.4e+02 Score=29.31 Aligned_cols=102 Identities=16% Similarity=0.187 Sum_probs=67.1
Q ss_pred HHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccCCCCCCCc
Q 002585 531 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHYQNQNGVW 610 (904)
Q Consensus 531 ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~~~~~~~g~~ 610 (904)
+.|+...+.|++.|-+.= +.-..+..++.|+.|+++|+.|..-+..-|...
T Consensus 91 ~dl~~a~~~gvd~iri~~--------------------~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~--------- 141 (333)
T TIGR03217 91 HDLKAAYDAGARTVRVAT--------------------HCTEADVSEQHIGMARELGMDTVGFLMMSHMTP--------- 141 (333)
T ss_pred HHHHHHHHCCCCEEEEEe--------------------ccchHHHHHHHHHHHHHcCCeEEEEEEcccCCC---------
Confidence 446667778998887521 111224688999999999998887665543210
Q ss_pred ccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEe-ccccccccchH
Q 002585 611 NIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL-DFVRGFWGGYV 689 (904)
Q Consensus 611 ~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRl-D~a~~~~~~f~ 689 (904)
.+++.+.++... ++|+|.+.+ |.+..+.++-+
T Consensus 142 ----------------------------------------------~e~l~~~a~~~~-~~Ga~~i~i~DT~G~~~P~~v 174 (333)
T TIGR03217 142 ----------------------------------------------PEKLAEQAKLME-SYGADCVYIVDSAGAMLPDDV 174 (333)
T ss_pred ----------------------------------------------HHHHHHHHHHHH-hcCCCEEEEccCCCCCCHHHH
Confidence 256777777765 899999988 88877777655
Q ss_pred HHHHHhc----CCCEEEEeecCC
Q 002585 690 KDYLEAT----EPYFAVGEYWDS 708 (904)
Q Consensus 690 ~~~~~~~----~p~~liGE~w~~ 708 (904)
.++++++ +|+.-+|=+-++
T Consensus 175 ~~~v~~l~~~l~~~i~ig~H~Hn 197 (333)
T TIGR03217 175 RDRVRALKAVLKPETQVGFHAHH 197 (333)
T ss_pred HHHHHHHHHhCCCCceEEEEeCC
Confidence 5555443 444555555444
No 224
>PRK11059 regulatory protein CsrD; Provisional
Probab=26.81 E-value=78 Score=39.08 Aligned_cols=75 Identities=13% Similarity=0.077 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcCCC---CCCCCCcccCCCcCCCCCC--------HHHHHHHHHHHHHcCCEEEE
Q 002585 524 RWYMELKEKATELSSLGFSVIWLPPPTESV---SPEGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILG 592 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~---s~hGYd~~Dy~~IDp~lGt--------~edlk~LV~aAH~~GIkVIL 592 (904)
.++..+...+..|+++||.... -=+-... .+-..-+.||-+||+.|-. ..-++.+|+.||..||+||.
T Consensus 530 ~~~~~~~~~l~~L~~~G~~iai-ddfG~g~~s~~~L~~l~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i~viA 608 (640)
T PRK11059 530 QHISRLRPVLRMLRGLGCRLAV-DQAGLTVVSTSYIKELNVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTETQVFA 608 (640)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-ECCCCCcccHHHHHhCCCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCCeEEE
Confidence 4577888888888888886543 1110000 1112335777787766532 23489999999999999999
Q ss_pred Eeecccc
Q 002585 593 DVVLNHR 599 (904)
Q Consensus 593 D~V~NHt 599 (904)
..|=+.-
T Consensus 609 egVEt~~ 615 (640)
T PRK11059 609 TGVESRE 615 (640)
T ss_pred EEeCCHH
Confidence 9997644
No 225
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=26.55 E-value=1.3e+02 Score=30.10 Aligned_cols=63 Identities=17% Similarity=0.280 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcC-CEEEEEeeccccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVG-MKILGDVVLNHRC 600 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~G-IkVILD~V~NHt~ 600 (904)
.+.++.|+++|++.|.++.=. ...+-| ..+.+. ++.+++.+-++.++++| +.|.+.+++++..
T Consensus 100 ~~~~~~l~~~~~~~i~isl~~--~~~~~~-----~~~~~~-~~~~~~~~~i~~~~~~g~~~v~~~~~~g~~~ 163 (216)
T smart00729 100 EELLEALKEAGVNRVSLGVQS--GSDEVL-----KAINRG-HTVEDVLEAVEKLREAGPIKVSTDLIVGLPG 163 (216)
T ss_pred HHHHHHHHHcCCCeEEEeccc--CCHHHH-----HHhcCC-CCHHHHHHHHHHHHHhCCcceEEeEEecCCC
Confidence 567889999999999887532 111111 112222 45699999999999999 8999888887653
No 226
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=26.55 E-value=1.4e+02 Score=31.36 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 002585 523 GRWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (904)
Q Consensus 523 GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVIL 592 (904)
.++-...++.++.+.+.|+++|.+.|+... .+..++++|.+.||.||+
T Consensus 38 ~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~----------------------~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 38 QNDPEEQIEQIEQAISQGVDGIIVSPVDPD----------------------SLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp TTTHHHHHHHHHHHHHTTESEEEEESSSTT----------------------TTHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCEEEecCCCHH----------------------HHHHHHHHHhhcCceEEE
Confidence 567788999999999999999999987432 256788999999999998
No 227
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=26.06 E-value=1.2e+02 Score=32.93 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEE
Q 002585 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKIL 591 (904)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVI 591 (904)
.+.+.|+.++++|+++|.|.+- . ++ ..+++.--+.+++++|.+.+.++||+|.
T Consensus 17 ~~~e~l~~~~~~G~~~VEl~~~-~------~~----~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 17 CWLERLQLAKTCGFDFVEMSVD-E------TD----DRLSRLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred CHHHHHHHHHHcCCCEEEEecC-C------cc----chhhccCCCHHHHHHHHHHHHHcCCCce
Confidence 4788899999999999999532 1 10 1122222257889999999999999985
No 228
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=25.89 E-value=1.4e+02 Score=34.59 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCCC----CCCCCCcccC-------CCcC-------------------C--CC
Q 002585 523 GRWYMELKEKATELSSLGFSVIWLPPPTESV----SPEGYMPRDL-------YNLS-------------------S--RY 570 (904)
Q Consensus 523 GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~----s~hGYd~~Dy-------~~ID-------------------p--~l 570 (904)
.|=-++|.-.++-|+.-|-|.+.--|=|..- .+++-.+.-| ..|| | .-
T Consensus 133 sGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPc 212 (447)
T KOG0259|consen 133 SGCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPC 212 (447)
T ss_pred ccchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCC
Confidence 4667889999999999999988777766532 2233222211 1111 1 12
Q ss_pred C---CHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 002585 571 G---NIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (904)
Q Consensus 571 G---t~edlk~LV~aAH~~GIkVILD~V~NHt~~~ 602 (904)
| +.+-|+++.+.||+.||-||-|-|+.|+.-.
T Consensus 213 GnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg 247 (447)
T KOG0259|consen 213 GNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFG 247 (447)
T ss_pred cccccHHHHHHHHHHHHHhCCeEEehhhcceeecC
Confidence 2 5789999999999999999999999999743
No 229
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=25.59 E-value=92 Score=36.70 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=47.3
Q ss_pred CceeeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCC-----CCCCCCcccCCCcCCCCCCHHHHHHHHH
Q 002585 507 GFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLPPPTESV-----SPEGYMPRDLYNLSSRYGNIDELKDVVN 581 (904)
Q Consensus 507 ~y~i~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~-----s~hGYd~~Dy~~IDp~lGt~edlk~LV~ 581 (904)
|.+++..... ++++..-+.. .++.+|++..++.+- .-. -..+=..+-.-.+....|...|++++++
T Consensus 103 Gd~Vi~~~~~-----y~~t~~~~~~---~l~~~Gi~v~~vd~~-d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~ 173 (433)
T PRK08134 103 GSHIVASSAL-----YGGSHNLLHY---TLRRFGIETTFVKPG-DIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAA 173 (433)
T ss_pred CCEEEEeCCc-----cHHHHHHHHH---HHhhCCeEEEEECCC-CHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHH
Confidence 3456665443 2344433332 467899998888752 000 0001011111122333455689999999
Q ss_pred HHHHcCCEEEEEeec
Q 002585 582 KFHDVGMKILGDVVL 596 (904)
Q Consensus 582 aAH~~GIkVILD~V~ 596 (904)
.||++|+.||+|..+
T Consensus 174 la~~~gi~livD~t~ 188 (433)
T PRK08134 174 IAHEAGVPLLVDSTF 188 (433)
T ss_pred HHHHcCCEEEEECCC
Confidence 999999999999885
No 230
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=25.23 E-value=1.2e+02 Score=35.09 Aligned_cols=64 Identities=13% Similarity=0.123 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~ 601 (904)
.++|..|+++|||.|.|.. .-.+..-...+. +.-+.++..+.++.|++.++.|-+|++++.-+.
T Consensus 111 ~e~l~~l~~~GvnRiSiGv-------QS~~d~~L~~lg-R~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgq 174 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIGV-------QSLKEDDLKKLG-RTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQ 174 (390)
T ss_pred HHHHHHHHHCCCCEEEEEC-------CcCCHHHHHHcC-CCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCC
Confidence 4899999999999999864 111211122222 334577788888999999999999999986554
No 231
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=25.20 E-value=1.2e+02 Score=35.12 Aligned_cols=62 Identities=13% Similarity=0.122 Sum_probs=44.3
Q ss_pred HHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 002585 531 EKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (904)
Q Consensus 531 ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~ 600 (904)
++|..|+++|||.|.|-- . + .+..-...++ +--+.++..+.|+.+++.++.|-+|++++--+
T Consensus 105 e~L~~l~~~GvnrislGv-Q-S-----~~d~vL~~l~-R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPg 166 (380)
T PRK09057 105 GRFRGYRAAGVNRVSLGV-Q-A-----LNDADLRFLG-RLHSVAEALAAIDLAREIFPRVSFDLIYARPG 166 (380)
T ss_pred HHHHHHHHcCCCEEEEec-c-c-----CCHHHHHHcC-CCCCHHHHHHHHHHHHHhCccEEEEeecCCCC
Confidence 899999999999999753 1 1 1111122222 22367788888999999999999999997544
No 232
>PRK14012 cysteine desulfurase; Provisional
Probab=25.14 E-value=2.5e+02 Score=32.29 Aligned_cols=68 Identities=15% Similarity=0.289 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCcCCC----------CCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 002585 528 ELKEKATELSSLGFSVIWLPPPTESV----------SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (904)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~----------s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~ 596 (904)
....-+..++..|++.+++.+- +.. -..+-...-...+....|...+++++.+.||++|+.||+|.+-
T Consensus 106 s~~~~~~~~~~~g~~~~~v~~~-~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~ 183 (404)
T PRK14012 106 AVLDTCRQLEREGFEVTYLDPQ-SNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQ 183 (404)
T ss_pred HHHHHHHHHHhCCCEEEEEccC-CCCcCCHHHHHHhcCCCCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcch
Confidence 3333344566678887776431 111 0011111112233445789999999999999999999999984
No 233
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=25.10 E-value=1.5e+02 Score=33.81 Aligned_cols=59 Identities=19% Similarity=0.081 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 002585 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~ 600 (904)
|+..+.+.+. + .+.+|.+.|++... |.. .-+.+.+++|++.|+++|+-||.|-|....+
T Consensus 164 d~~~l~~~l~---~-~~~avivep~~~~~---G~~----------~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g 222 (389)
T PRK01278 164 DIEALKAAIT---P-NTAAILIEPIQGEG---GIR----------PAPDEFLKGLRQLCDENGLLLIFDEVQCGMG 222 (389)
T ss_pred CHHHHHHhhC---C-CeEEEEEecccCCC---CCc----------CCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 5555555443 2 57899999984322 211 1135789999999999999999999986443
No 234
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=24.98 E-value=8.3e+02 Score=28.09 Aligned_cols=29 Identities=24% Similarity=0.185 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 002585 573 IDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (904)
Q Consensus 573 ~edlk~LV~aAH~~GIkVILD~V~NHt~~~~ 603 (904)
.+.||++++++|++|-++++= ++|.|...
T Consensus 78 i~~~~~lad~vH~~Ga~i~~Q--L~H~Gr~~ 106 (362)
T PRK10605 78 IAAWKKITAGVHAEGGHIAVQ--LWHTGRIS 106 (362)
T ss_pred HHHHHHHHHHHHhCCCEEEEe--ccCCCCCC
Confidence 468999999999999999984 57988754
No 235
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=24.60 E-value=1.4e+02 Score=32.25 Aligned_cols=49 Identities=12% Similarity=0.170 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 002585 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (904)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NH 598 (904)
|+..-++.+++.|++.|-+.-. ..++++.+++.|+++||+.++=+.++-
T Consensus 92 G~~~fi~~~~~aG~~giiipDl----------------------~~ee~~~~~~~~~~~g~~~i~~i~P~T 140 (242)
T cd04724 92 GLERFLRDAKEAGVDGLIIPDL----------------------PPEEAEEFREAAKEYGLDLIFLVAPTT 140 (242)
T ss_pred CHHHHHHHHHHCCCcEEEECCC----------------------CHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4677788889999998887521 125899999999999999998776653
No 236
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=24.51 E-value=1.8e+02 Score=32.63 Aligned_cols=60 Identities=13% Similarity=0.299 Sum_probs=44.9
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEeec
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVL 596 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIk-VILD~V~ 596 (904)
.+.++.|++.|++.|.++- ++.++.-|..+-..-|+.+...+-|++|.+.|+. |-+-+|+
T Consensus 102 ~~~~~~L~~~gl~~v~ISl-------d~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv 162 (334)
T TIGR02666 102 ARHAKDLKEAGLKRVNVSL-------DSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVV 162 (334)
T ss_pred HHHHHHHHHcCCCeEEEec-------ccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 4678899999999998775 4444444445543446888899999999999997 7777665
No 237
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=24.20 E-value=1.5e+02 Score=34.22 Aligned_cols=67 Identities=15% Similarity=0.260 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCCCEEEeCCCcCCC----------CCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 002585 529 LKEKATELSSLGFSVIWLPPPTESV----------SPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (904)
Q Consensus 529 I~ekLdYLk~LGVnaI~L~PIfes~----------s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~ 596 (904)
+..-+.+++..|+..+++..- +.. -..+....-...+....|...+++++++.||++|+.|++|.+-
T Consensus 105 ~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~ 181 (402)
T TIGR02006 105 VLDTCRYLEREGFEVTYLPPK-SNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQ 181 (402)
T ss_pred HHHHHHHHHhcCCEEEEEccC-CCCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcch
Confidence 333344566678877776432 111 0111222223344555788889999999999999999999985
No 238
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=24.19 E-value=1.2e+02 Score=35.82 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=47.9
Q ss_pred CceeeeecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEeC-CCcCCC-----CCCCCCcccCCCcCCCCCCHHHHHHHH
Q 002585 507 GFEILCQGFNWESHKSGRWYMELKEKATELSSLGFSVIWLP-PPTESV-----SPEGYMPRDLYNLSSRYGNIDELKDVV 580 (904)
Q Consensus 507 ~y~i~~~~F~Wd~~~~GGdl~GI~ekLdYLk~LGVnaI~L~-PIfes~-----s~hGYd~~Dy~~IDp~lGt~edlk~LV 580 (904)
|.+++..... ++|+..-+. ..++.+|+...++- |. +.. -..+....-.-.+--..|...++++++
T Consensus 108 Gd~VI~~~~~-----y~~t~~~~~---~~l~~~Gi~v~~vd~~~-d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~ 178 (437)
T PRK05613 108 GDHIVTSPRL-----YGGTETLFL---VTLNRLGIEVTFVENPD-DPESWQAAVQPNTKAFFGETFANPQADVLDIPAVA 178 (437)
T ss_pred CCEEEECCCc-----cHHHHHHHH---HHHHhcCeEEEEECCCC-CHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHH
Confidence 3456654433 345533222 35688999999985 42 100 011111111111112235668999999
Q ss_pred HHHHHcCCEEEEEeecc
Q 002585 581 NKFHDVGMKILGDVVLN 597 (904)
Q Consensus 581 ~aAH~~GIkVILD~V~N 597 (904)
+.||++|+.||.|.+.-
T Consensus 179 ~la~~~gi~livD~t~a 195 (437)
T PRK05613 179 EVAHRNQVPLIVDNTIA 195 (437)
T ss_pred HHHHHcCCeEEEECCCc
Confidence 99999999999999963
No 239
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=24.18 E-value=1.1e+02 Score=38.22 Aligned_cols=57 Identities=7% Similarity=0.069 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCC----HHHHHHHHHHHHHcCCEEEEEeec
Q 002585 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN----IDELKDVVNKFHDVGMKILGDVVL 596 (904)
Q Consensus 527 ~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt----~edlk~LV~aAH~~GIkVILD~V~ 596 (904)
..+.+.|.-+|.+|+|++-+..+.-+- +.|.-|. .-|.. +++.|++.|+.|||==.+
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~------------~eP~eG~fdf~~~D~~-~l~~a~~~Gl~vil~t~P 90 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNL------------HEPEEGKFDFTWLDEI-FLERAYKAGLYVILRTGP 90 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeec------------cCccccccCcccchHH-HHHHHHhcCceEEEecCC
Confidence 578899999999999999987765433 2222221 22444 899999999999996544
No 240
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=24.15 E-value=1.3e+02 Score=34.51 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCE-EEEEeeccccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMK-ILGDVVLNHRC 600 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIk-VILD~V~NHt~ 600 (904)
.+.|..|+++|++.|.|.- ++. +..-...++ +-.+.++..+-++.+++.|+. |-+|+.++.-+
T Consensus 99 ~e~l~~l~~~G~~rvsiGv--qS~-----~d~~L~~l~-R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPg 162 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGL--QAW-----QNSLLKYLG-RIHTFEEFLENYKLARKLGFNNINVDLMFGLPN 162 (374)
T ss_pred HHHHHHHHHcCCCEEEEEC--ccC-----CHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC
Confidence 4789999999999998764 221 111122232 334788899999999999997 77999987544
No 241
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=24.11 E-value=1.9e+02 Score=32.51 Aligned_cols=60 Identities=17% Similarity=0.328 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCC-EEEEEeec
Q 002585 529 LKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGM-KILGDVVL 596 (904)
Q Consensus 529 I~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GI-kVILD~V~ 596 (904)
+.+.++.|++.|++.|.++- ++.++.-|..+... ++.+.+.+-|+.|.+.|+ .|.+-+|+
T Consensus 107 l~~~~~~L~~agl~~i~ISl-------ds~~~e~~~~i~~~-~~~~~vl~~i~~~~~~g~~~v~i~~vv 167 (331)
T PRK00164 107 LARRAAALKDAGLDRVNVSL-------DSLDPERFKAITGR-DRLDQVLAGIDAALAAGLTPVKVNAVL 167 (331)
T ss_pred HHHHHHHHHHcCCCEEEEEe-------ccCCHHHhccCCCC-CCHHHHHHHHHHHHHCCCCcEEEEEEE
Confidence 34678899999999998775 44445445556544 678889999999999999 77777665
No 242
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=24.08 E-value=1.5e+02 Score=33.52 Aligned_cols=19 Identities=26% Similarity=0.648 Sum_probs=15.1
Q ss_pred HHHHHHHHcCCEEEEEeec
Q 002585 578 DVVNKFHDVGMKILGDVVL 596 (904)
Q Consensus 578 ~LV~aAH~~GIkVILD~V~ 596 (904)
..|++||++|++|+-=+.+
T Consensus 46 ~widaAHrnGV~vLGTiif 64 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIF 64 (311)
T ss_dssp HHHHHHHHTT--EEEEEEE
T ss_pred hhHHHHHhcCceEEEEEEe
Confidence 3789999999999998888
No 243
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=23.98 E-value=67 Score=37.56 Aligned_cols=61 Identities=18% Similarity=0.185 Sum_probs=41.5
Q ss_pred HHHHHcCCCEEEeCCCcCCCCC----------CCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEee
Q 002585 534 TELSSLGFSVIWLPPPTESVSP----------EGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVV 595 (904)
Q Consensus 534 dYLk~LGVnaI~L~PIfes~s~----------hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V 595 (904)
..-++.|+...++..- +...- .+=...-+..+-...|+..+++++++.||++|+.|++|.+
T Consensus 130 ~~~~~~Ga~v~~i~~~-~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaa 200 (405)
T COG0520 130 ELAKRTGAKVRVIPLD-DDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAA 200 (405)
T ss_pred HHHHhcCcEEEEEecC-CCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECc
Confidence 3445569988887643 32210 1111222344456789999999999999999999999987
No 244
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.97 E-value=1.6e+02 Score=31.80 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 002585 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (904)
Q Consensus 527 ~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~N 597 (904)
.+..+-++.+++.|+++|.+. |-.+=..++.+++++.+|++||++++=+-++
T Consensus 88 ~~~~~~i~~~~~~Gadgvii~-------------------dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~ 139 (244)
T PRK13125 88 DSLDNFLNMARDVGADGVLFP-------------------DLLIDYPDDLEKYVEIIKNKGLKPVFFTSPK 139 (244)
T ss_pred hCHHHHHHHHHHcCCCEEEEC-------------------CCCCCcHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 356677888899999999873 1011123578899999999999999966553
No 245
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=23.97 E-value=6.4e+02 Score=28.46 Aligned_cols=69 Identities=16% Similarity=0.008 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCcCCCCCCC--CCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 002585 527 MELKEKATELSSLGFSVIWLPPPTESVSPEG--YMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (904)
Q Consensus 527 ~GI~ekLdYLk~LGVnaI~L~PIfes~s~hG--Yd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~~ 602 (904)
+..++.....++=|+..|..-...-++...+ +.+.-| ++ .-.+.||+|++++|++|-++++=+ +|.|..
T Consensus 33 ~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~---~d--~~~~~~~~l~~~vh~~G~~~~~QL--~H~G~~ 103 (336)
T cd02932 33 DWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLW---ND--EQIEALKRIVDFIHSQGAKIGIQL--AHAGRK 103 (336)
T ss_pred HHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeec---CH--HHHHHHHHHHHHHHhcCCcEEEEc--cCCCcC
Confidence 3445555555666888886655444332211 111100 00 125689999999999999998775 577764
No 246
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=23.62 E-value=1.4e+02 Score=31.14 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCcCCCC---CCCCCcccCCCcCCCCCC--------HHHHHHHHHHHHHcCCEEEEE
Q 002585 525 WYMELKEKATELSSLGFSVIWLPPPTESVS---PEGYMPRDLYNLSSRYGN--------IDELKDVVNKFHDVGMKILGD 593 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~s---~hGYd~~Dy~~IDp~lGt--------~edlk~LV~aAH~~GIkVILD 593 (904)
+...+.+.+..|+++||. |.|-=+-.... .-..-+.||-++|+.+-. ..-++.+++.||..|++||.+
T Consensus 131 ~~~~~~~~i~~l~~~G~~-ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 131 DDESAVATLQRLRELGVR-IALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred ChHHHHHHHHHHHHCCCE-EEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 345556778888888886 34432111110 111224677777765532 346999999999999999999
Q ss_pred eecccc
Q 002585 594 VVLNHR 599 (904)
Q Consensus 594 ~V~NHt 599 (904)
.|=+..
T Consensus 210 gVe~~~ 215 (241)
T smart00052 210 GVETPE 215 (241)
T ss_pred cCCCHH
Confidence 987654
No 247
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=23.58 E-value=2.2e+02 Score=28.59 Aligned_cols=59 Identities=14% Similarity=0.003 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHH---HcCCEEEEEeecccc
Q 002585 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFH---DVGMKILGDVVLNHR 599 (904)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH---~~GIkVILD~V~NHt 599 (904)
.+..++...+.+++|+++|.+.|.+- +..+ ++.+.+.+.+++.. +.++-||+...+.++
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~------------~~~~---~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~ 125 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIG------------SLKE---GDWEEVLEEIAAVVEAADGGLPLKVILETRGL 125 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHH------------HHhC---CCHHHHHHHHHHHHHHhcCCceEEEEEECCCC
Confidence 78899999999999999999987541 1111 13444444444443 359999998887554
No 248
>PLN02651 cysteine desulfurase
Probab=23.52 E-value=1.6e+02 Score=33.34 Aligned_cols=33 Identities=9% Similarity=0.168 Sum_probs=28.4
Q ss_pred CCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 002585 564 YNLSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (904)
Q Consensus 564 ~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~ 596 (904)
..+...-|...+++++++.||++|+.+++|.+-
T Consensus 145 ~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~ 177 (364)
T PLN02651 145 MAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQ 177 (364)
T ss_pred ECCCCCceecccHHHHHHHHHHcCCEEEEEcch
Confidence 344556788899999999999999999999885
No 249
>PRK08064 cystathionine beta-lyase; Provisional
Probab=23.47 E-value=1.5e+02 Score=34.17 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=26.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCEEEEEeec
Q 002585 566 LSSRYGNIDELKDVVNKFHDVGMKILGDVVL 596 (904)
Q Consensus 566 IDp~lGt~edlk~LV~aAH~~GIkVILD~V~ 596 (904)
+....|...+++++++.||++|+.||+|-.+
T Consensus 147 p~NptG~~~dl~~I~~la~~~g~~vvvD~a~ 177 (390)
T PRK08064 147 PSNPLLKVTDIRGVVKLAKAIGCLTFVDNTF 177 (390)
T ss_pred CCCCCcEeccHHHHHHHHHHcCCEEEEECCC
Confidence 3445788889999999999999999999774
No 250
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=23.35 E-value=1.5e+02 Score=33.19 Aligned_cols=35 Identities=9% Similarity=0.213 Sum_probs=28.5
Q ss_pred CcCCCCCCHHHHHHHHHHHHHcCCEEEEEee--cccc
Q 002585 565 NLSSRYGNIDELKDVVNKFHDVGMKILGDVV--LNHR 599 (904)
Q Consensus 565 ~IDp~lGt~edlk~LV~aAH~~GIkVILD~V--~NHt 599 (904)
.+....|...+++++++.||++|+.||+|.+ +.|.
T Consensus 146 ~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~ 182 (353)
T TIGR03235 146 HVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKI 182 (353)
T ss_pred cccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCc
Confidence 3445568888899999999999999999998 4444
No 251
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=22.86 E-value=5.4e+02 Score=28.76 Aligned_cols=51 Identities=14% Similarity=0.039 Sum_probs=33.0
Q ss_pred HHHHHcCCCEEEeCCCcCCCC---CCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 002585 534 TELSSLGFSVIWLPPPTESVS---PEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (904)
Q Consensus 534 dYLk~LGVnaI~L~PIfes~s---~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVIL 592 (904)
.+.++.|+++|-|.=+..... .|+ .. ..+.....+..-|++++++|.+||+
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~----g~----~~~~~~~~~~~~i~~lk~~G~kVii 72 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWG----GS----YPLDQGGWIKSDIAALRAAGGDVIV 72 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCC----CC----CCcccchhHHHHHHHHHHcCCeEEE
Confidence 577788999998863322211 111 00 1122466788899999999999998
No 252
>PRK09776 putative diguanylate cyclase; Provisional
Probab=22.49 E-value=96 Score=40.48 Aligned_cols=70 Identities=16% Similarity=0.103 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCC--------cccCCCcCCCCC--------CHHHHHHHHHHHHHcC
Q 002585 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYM--------PRDLYNLSSRYG--------NIDELKDVVNKFHDVG 587 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd--------~~Dy~~IDp~lG--------t~edlk~LV~aAH~~G 587 (904)
-+...+.+.+..|+++||..- |-= + ..||. +.|+-+||..|= ...-++.+++.||+.|
T Consensus 971 ~~~~~~~~~~~~l~~~G~~~~-ldd---f--g~g~~~~~~l~~~~~d~iKid~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 1044 (1092)
T PRK09776 971 NHAESASRLVQKLRLAGCRVV-LSD---F--GRGLSSFNYLKAFMADYLKLDGELVANLHGNLMDEMLISIIQGHAQRLG 1044 (1092)
T ss_pred cCHHHHHHHHHHHHHCCcEEE-EcC---C--CCCchHHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHcC
Confidence 457788899999999999643 221 1 12333 678888986652 2345888999999999
Q ss_pred CEEEEEeecccc
Q 002585 588 MKILGDVVLNHR 599 (904)
Q Consensus 588 IkVILD~V~NHt 599 (904)
|+||...|=+..
T Consensus 1045 ~~~iaegVEt~~ 1056 (1092)
T PRK09776 1045 MKTIAGPVELPL 1056 (1092)
T ss_pred CcEEecccCCHH
Confidence 999999886543
No 253
>PRK05942 aspartate aminotransferase; Provisional
Probab=22.49 E-value=1.8e+02 Score=33.41 Aligned_cols=57 Identities=7% Similarity=0.155 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeC-CCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 002585 525 WYMELKEKATELSSLGFSVIWLP-PPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~-PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~ 600 (904)
++..+.+.+. -.+..|+|+ |- ++. ...=+.+++++|++.|+++|+.||.|-++....
T Consensus 159 d~~~l~~~~~----~~~k~i~l~~P~--NPt-------------G~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~ 216 (394)
T PRK05942 159 DLSSIPEEVA----QQAKILYFNYPS--NPT-------------TATAPREFFEEIVAFARKYEIMLVHDLCYAELA 216 (394)
T ss_pred CHHHHHHhcc----ccceEEEEcCCC--CCC-------------CCcCCHHHHHHHHHHHHHcCeEEEEeccchhhc
Confidence 4555555443 268889987 51 111 112257889999999999999999999876543
No 254
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=22.44 E-value=1.3e+02 Score=33.42 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEeecccc
Q 002585 569 RYGNIDELKDVVNKFHDVGMKILGDVVLNHR 599 (904)
Q Consensus 569 ~lGt~edlk~LV~aAH~~GIkVILD~V~NHt 599 (904)
..|..++++++++.||++|+.|++|.+....
T Consensus 160 ~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~ 190 (345)
T cd06450 160 DTGAIDPLEEIADLAEKYDLWLHVDAAYGGF 190 (345)
T ss_pred CCCCCCCHHHHHHHHHHhCCeEEEechhhHH
Confidence 3566678999999999999999999996543
No 255
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=22.42 E-value=70 Score=34.22 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCC-CHHHHHHHHHHHHHcCCEEEEEeeccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYG-NIDELKDVVNKFHDVGMKILGDVVLNH 598 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lG-t~edlk~LV~aAH~~GIkVILD~V~NH 598 (904)
........++|.+.|=++.-+.... ...+. ..+++++++++||+.||+||+...+..
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~------------~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~ 136 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALG------------SGNEDEVIEEIAAVVEECHKYGLKVILEPYLRG 136 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHH------------TTHHHHHHHHHHHHHHHHHTSEEEEEEEECECH
T ss_pred HHHHHHHHHcCCceeeeeccccccc------------cccHHHHHHHHHHHHHHHhcCCcEEEEEEecCc
Confidence 5778888999999997765431110 00000 246899999999999999999977643
No 256
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=22.41 E-value=2.1e+02 Score=32.64 Aligned_cols=71 Identities=8% Similarity=0.137 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCC-----CCC-CCCcccC------CCcCCCCC-CHHHHHHHHHHHHHcCC
Q 002585 522 SGRWYMELKEKATELSSLGFSVIWLPPPTESV-----SPE-GYMPRDL------YNLSSRYG-NIDELKDVVNKFHDVGM 588 (904)
Q Consensus 522 ~GGdl~GI~ekLdYLk~LGVnaI~L~PIfes~-----s~h-GYd~~Dy------~~IDp~lG-t~edlk~LV~aAH~~GI 588 (904)
|.|+++-..+.++-.++.|+++|=+--...-. ... .|...+. |.+=..+. +.++++.|.+.|++.||
T Consensus 11 H~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi 90 (329)
T TIGR03569 11 HNGSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGI 90 (329)
T ss_pred ccCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 67999999999999999999999776421111 111 2322211 11111111 35799999999999999
Q ss_pred EEEE
Q 002585 589 KILG 592 (904)
Q Consensus 589 kVIL 592 (904)
.++-
T Consensus 91 ~~~s 94 (329)
T TIGR03569 91 EFLS 94 (329)
T ss_pred cEEE
Confidence 8874
No 257
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=22.32 E-value=1.7e+02 Score=32.77 Aligned_cols=62 Identities=18% Similarity=0.288 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCC-EEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 002585 528 ELKEKATELSSLGFS-VIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (904)
Q Consensus 528 GI~ekLdYLk~LGVn-aI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~N 597 (904)
..++.|..|++.|++ .|+|-. ++.++ .-...++.. -+.+++.+.++.++++||+|..|+.++
T Consensus 124 e~l~~L~~l~~~G~~~~i~lGl--QS~~d-----~~L~~i~Rg-~t~~~~~~ai~~l~~~gi~v~~~lI~G 186 (302)
T TIGR01212 124 EVLDLLAEYVERGYEVWVELGL--QTAHD-----KTLKKINRG-HDFACYVDAVKRARKRGIKVCSHVILG 186 (302)
T ss_pred HHHHHHHHhhhCCceEEEEEcc--CcCCH-----HHHHHHcCc-ChHHHHHHHHHHHHHcCCEEEEeEEEC
Confidence 456677777778994 566542 22211 111222222 256889999999999999999999885
No 258
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=22.29 E-value=3.5e+02 Score=28.66 Aligned_cols=103 Identities=14% Similarity=0.187 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEeC-CCcCCCCCCCCCcccCCCcCCCCCC-----HHHHHHHHHHHHHcCCEEEEEeecccc
Q 002585 526 YMELKEKATELSSLGFSVIWLP-PPTESVSPEGYMPRDLYNLSSRYGN-----IDELKDVVNKFHDVGMKILGDVVLNHR 599 (904)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~-PIfes~s~hGYd~~Dy~~IDp~lGt-----~edlk~LV~aAH~~GIkVILD~V~NHt 599 (904)
...+..-+.-+++.|++.|.+. |+.+ ..+.-.++. .+.++++|+.|+++|+.| .+.+-+.
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~------------~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v--~~~~~~~ 131 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSD------------LHIRKNLNKSREEALERIEEAVKYAKELGYEV--AFGCEDA 131 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSH------------HHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE--EEEETTT
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccH------------HHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce--EeCcccc
Confidence 4455555777788999988764 1111 111122232 567889999999999999 2222111
Q ss_pred cccCCCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEe-
Q 002585 600 CAHYQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRL- 678 (904)
Q Consensus 600 ~~~~~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRl- 678 (904)
+. + + .+++.+.++... ++|+|.+++
T Consensus 132 ~~-------------------------------------------------~-~---~~~~~~~~~~~~-~~g~~~i~l~ 157 (237)
T PF00682_consen 132 SR-------------------------------------------------T-D---PEELLELAEALA-EAGADIIYLA 157 (237)
T ss_dssp GG-------------------------------------------------S-S---HHHHHHHHHHHH-HHT-SEEEEE
T ss_pred cc-------------------------------------------------c-c---HHHHHHHHHHHH-HcCCeEEEee
Confidence 10 0 0 356777777776 889999998
Q ss_pred ccccccccchHHHHHHhc
Q 002585 679 DFVRGFWGGYVKDYLEAT 696 (904)
Q Consensus 679 D~a~~~~~~f~~~~~~~~ 696 (904)
|.+..+.+..+.++++.+
T Consensus 158 Dt~G~~~P~~v~~lv~~~ 175 (237)
T PF00682_consen 158 DTVGIMTPEDVAELVRAL 175 (237)
T ss_dssp ETTS-S-HHHHHHHHHHH
T ss_pred CccCCcCHHHHHHHHHHH
Confidence 677777776666655544
No 259
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=22.18 E-value=1.4e+02 Score=34.63 Aligned_cols=64 Identities=13% Similarity=0.041 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~ 601 (904)
.++|..|+++|||.|.|-- ++ .+..-+..++.. -+.++..+.|+.+++.+..|-+|++++.-+.
T Consensus 122 ~e~L~~l~~~GvnrisiGv--QS-----~~~~~L~~l~R~-~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgq 185 (394)
T PRK08898 122 AEKFAQFRASGVNRLSIGI--QS-----FNDAHLKALGRI-HDGAEARAAIEIAAKHFDNFNLDLMYALPGQ 185 (394)
T ss_pred HHHHHHHHHcCCCeEEEec--cc-----CCHHHHHHhCCC-CCHHHHHHHHHHHHHhCCceEEEEEcCCCCC
Confidence 4899999999999999753 11 122222233222 3567788888999999999999999986553
No 260
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=22.15 E-value=2e+02 Score=31.41 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 002585 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLN 597 (904)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~N 597 (904)
|+..-+..+++.|++.|.+... ..++..+++++|+++||+.++=+.++
T Consensus 103 G~e~f~~~~~~aGvdgviipDl----------------------p~ee~~~~~~~~~~~gl~~i~lv~P~ 150 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVADL----------------------PLEESGDLVEAAKKHGVKPIFLVAPN 150 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECCC----------------------ChHHHHHHHHHHHHCCCcEEEEECCC
Confidence 6777788899999999887621 23788999999999999998655554
No 261
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=21.80 E-value=1.9e+02 Score=31.00 Aligned_cols=48 Identities=25% Similarity=0.468 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 002585 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGD 593 (904)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD 593 (904)
.+-+-|.+.++||+++|.++ .|.-+. +.++.++||+.|-+.|..|.-.
T Consensus 91 kvdeyl~e~~~lGfe~iEIS--------~G~i~m----------~~eek~~lIe~a~d~Gf~vlsE 138 (258)
T COG1809 91 KVDEYLNEAKELGFEAIEIS--------NGTIPM----------STEEKCRLIERAVDEGFMVLSE 138 (258)
T ss_pred cHHHHHHHHHHcCccEEEec--------CCeeec----------chHHHHHHHHHHHhcccEEehh
Confidence 35667889999999999987 232222 4678999999999999988643
No 262
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=21.69 E-value=1.5e+02 Score=33.22 Aligned_cols=66 Identities=18% Similarity=0.168 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHHHHcCC--CEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccccc
Q 002585 523 GRWYMELKEKATELSSLGF--SVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRC 600 (904)
Q Consensus 523 GGdl~GI~ekLdYLk~LGV--naI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~ 600 (904)
+-|+..+.+.++..+.-++ ..|++..+. .+....=+.++++++++.|.++|+-||.|-++.-..
T Consensus 129 ~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~--------------nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~ 194 (363)
T PF00155_consen 129 HLDPEALEEALDELPSKGPRPKAVLICNPN--------------NPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLI 194 (363)
T ss_dssp EETHHHHHHHHHTSHTTTETEEEEEEESSB--------------TTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGB
T ss_pred cccccccccccccccccccccceeeecccc--------------cccccccccccccchhhhhcccccceeeeeceeccc
Confidence 4588999999998887765 667765432 222222268999999999999999999999987655
Q ss_pred cc
Q 002585 601 AH 602 (904)
Q Consensus 601 ~~ 602 (904)
..
T Consensus 195 ~~ 196 (363)
T PF00155_consen 195 FG 196 (363)
T ss_dssp SS
T ss_pred cC
Confidence 43
No 263
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=21.50 E-value=4e+02 Score=30.12 Aligned_cols=120 Identities=14% Similarity=0.102 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHc--CCEEEEEeecccccccC
Q 002585 526 YMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDV--GMKILGDVVLNHRCAHY 603 (904)
Q Consensus 526 l~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~--GIkVILD~V~NHt~~~~ 603 (904)
+..+.+.+..+.++||++|-|-|+-+.....|= .+.|| ..-..+-|+++++. .|-||-|+.+.....+.
T Consensus 60 id~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs-----~A~~~----~g~v~~air~iK~~~pdl~vi~DVcLc~YT~hG 130 (322)
T PRK13384 60 ESALADEIERLYALGIRYVMPFGISHHKDAKGS-----DTWDD----NGLLARMVRTIKAAVPEMMVIPDICFCEYTDHG 130 (322)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCcc-----cccCC----CChHHHHHHHHHHHCCCeEEEeeeecccCCCCC
Confidence 778999999999999999999999432211110 11111 11234444444444 89999999986544221
Q ss_pred CCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhccCccEEEeccccc
Q 002585 604 QNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNEIGYDGWRLDFVRG 683 (904)
Q Consensus 604 ~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e~GIDGfRlD~a~~ 683 (904)
+- +.-. +=.-.|.+..+.+.+...-.. +.|+|-. +...
T Consensus 131 -----Hc-------------------------------Gil~--~g~i~ND~Tl~~L~~~Als~A-~AGADiV---APSd 168 (322)
T PRK13384 131 -----HC-------------------------------GVLH--NDEVDNDATVENLVKQSVTAA-KAGADML---APSA 168 (322)
T ss_pred -----ce-------------------------------eecc--CCcCccHHHHHHHHHHHHHHH-HcCCCeE---eccc
Confidence 10 0000 001346677777877777776 7888754 3345
Q ss_pred cccchHHHHHHhc
Q 002585 684 FWGGYVKDYLEAT 696 (904)
Q Consensus 684 ~~~~f~~~~~~~~ 696 (904)
+.+.-+..+.+++
T Consensus 169 MMDGrV~aIR~aL 181 (322)
T PRK13384 169 MMDGQVKAIRQGL 181 (322)
T ss_pred ccccHHHHHHHHH
Confidence 5555555555544
No 264
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=21.49 E-value=1.6e+02 Score=34.89 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcC-CEEEEEeecccccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVG-MKILGDVVLNHRCA 601 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~G-IkVILD~V~NHt~~ 601 (904)
.++|..++++|||.|.|- |.... ..-...++ +--+.++..+-++.+++.| +.|.+|++++.=+.
T Consensus 163 ~e~l~~l~~aGvnRiSiG-VQSf~------d~vLk~lg-R~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgq 227 (449)
T PRK09058 163 DEKADAALDAGANRFSIG-VQSFN------TQVRRRAG-RKDDREEVLARLEELVARDRAAVVCDLIFGLPGQ 227 (449)
T ss_pred HHHHHHHHHcCCCEEEec-CCcCC------HHHHHHhC-CCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCC
Confidence 588999999999999864 22111 11111222 2235788888999999999 89999999975543
No 265
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=21.29 E-value=2e+02 Score=30.85 Aligned_cols=20 Identities=10% Similarity=0.081 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCCCEEEeCC
Q 002585 529 LKEKATELSSLGFSVIWLPP 548 (904)
Q Consensus 529 I~ekLdYLk~LGVnaI~L~P 548 (904)
+.+.|+.++++|+++|.|..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~ 36 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMF 36 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcC
Confidence 56667888889999998854
No 266
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=21.22 E-value=2.2e+02 Score=30.69 Aligned_cols=53 Identities=8% Similarity=0.012 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 002585 528 ELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILG 592 (904)
Q Consensus 528 GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVIL 592 (904)
++...+++++++|++.|.|...-. +.|. +..-+.+++++|.+.+.++||+|.+
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~----~~~~--------~~~~~~~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNP----RSWK--------GVRLSEETAEKFKEALKENNIDVSV 63 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCC----CCCC--------CCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 366789999999999999864321 1111 1134567788888888999999764
No 267
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=21.18 E-value=2e+02 Score=33.15 Aligned_cols=60 Identities=8% Similarity=-0.069 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccc
Q 002585 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCA 601 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~ 601 (904)
|+..+.+.+. + .+-+|.+.|++..... ...+.+.+++|++-|+++|+-||+|=|..+.+.
T Consensus 173 d~~~l~~~l~---~-~~aaiiiep~~~~gg~-------------~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~ 232 (403)
T PRK05093 173 DLAAVKAVID---D-HTCAVVVEPIQGEGGV-------------IPATPEFLQGLRELCDQHNALLIFDEVQTGMGR 232 (403)
T ss_pred CHHHHHHHhc---C-CeEEEEEecccCCCCC-------------ccCCHHHHHHHHHHHHHcCCEEEEechhhCCCC
Confidence 6666665553 1 4678888887643321 013567899999999999999999999766543
No 268
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=21.13 E-value=3.3e+02 Score=30.69 Aligned_cols=105 Identities=17% Similarity=0.181 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeecccccccC
Q 002585 524 RWYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNHRCAHY 603 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NHt~~~~ 603 (904)
-++..+.+-..-|+++|||+|-|+=+.... ..+-+. -.+.+++|.+.+...||||.|-+-|. +...
T Consensus 54 ~~~~R~~~YARllASiGINgvvlNNVNa~~----------~~Lt~~--~l~~v~~lAdvfRpYGIkv~LSvnFa--sP~~ 119 (328)
T PF07488_consen 54 RDLTRYRDYARLLASIGINGVVLNNVNANP----------KLLTPE--YLDKVARLADVFRPYGIKVYLSVNFA--SPIE 119 (328)
T ss_dssp S--HHHHHHHHHHHHTT--EEE-S-SS--C----------GGGSTT--THHHHHHHHHHHHHTT-EEEEEE-TT--HHHH
T ss_pred cchhHHHHHHHHHhhcCCceEEecccccCh----------hhcCHH--HHHHHHHHHHHHhhcCCEEEEEeecc--CCcc
Confidence 467788888888999999999998664333 112111 26789999999999999999987663 2110
Q ss_pred CCCCCCcccCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhc-cCccEEEeccc
Q 002585 604 QNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWLRNE-IGYDGWRLDFV 681 (904)
Q Consensus 604 ~~~~g~~~~y~g~~~W~~~~~~~~~~~f~~~~~~~~~~~~~~lpdlN~~np~Vr~~i~~~l~~Wi~e-~GIDGfRlD~a 681 (904)
..+|+..|.-+|+|++.-.+.+...-+. =++-||=+-+-
T Consensus 120 ---------------------------------------lggL~TaDPld~~V~~WW~~k~~eIY~~IPDfgGflVKAd 159 (328)
T PF07488_consen 120 ---------------------------------------LGGLPTADPLDPEVRQWWKDKADEIYSAIPDFGGFLVKAD 159 (328)
T ss_dssp ---------------------------------------TTS-S---TTSHHHHHHHHHHHHHHHHH-TT--EEEE--S
T ss_pred ---------------------------------------cCCcCcCCCCCHHHHHHHHHHHHHHHHhCCCccceEEEec
Confidence 1234456666788887776654432211 25668877654
No 269
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=20.95 E-value=1.3e+03 Score=26.60 Aligned_cols=68 Identities=22% Similarity=0.161 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCC---HHHHHHHHHHHHHcCCEEEEEeeccccccc
Q 002585 527 MELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGN---IDELKDVVNKFHDVGMKILGDVVLNHRCAH 602 (904)
Q Consensus 527 ~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt---~edlk~LV~aAH~~GIkVILD~V~NHt~~~ 602 (904)
+-.++.....+.=|+..|...=........+|. -.|.+-+ .+.||+++++.|++|=++++=+ +|.|+.
T Consensus 39 ~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~------~~~~l~~d~~i~~~~~vt~avH~~G~~i~iQL--~H~Gr~ 109 (363)
T COG1902 39 DLLAEYYAERAKGGAGLIITEATAVDPGGRGYP------GQPGLWSDAQIPGLKRLTEAVHAHGAKIFIQL--WHAGRK 109 (363)
T ss_pred HHHHHHHHHHhcCCCCEEEEeeEeeCcccccCC------CCCccCChhHhHHHHHHHHHHHhcCCeEEEEe--ccCccc
Confidence 344555555566557766655211122222221 1122222 5689999999999999999865 788854
No 270
>PRK09028 cystathionine beta-lyase; Provisional
Probab=20.91 E-value=1.1e+02 Score=35.69 Aligned_cols=28 Identities=7% Similarity=0.129 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEEeecc
Q 002585 570 YGNIDELKDVVNKFHDVGMKILGDVVLN 597 (904)
Q Consensus 570 lGt~edlk~LV~aAH~~GIkVILD~V~N 597 (904)
.|...+++++++.||++|+.||+|-++-
T Consensus 159 tg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 159 TMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 5888999999999999999999998884
No 271
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=20.78 E-value=2.5e+02 Score=30.04 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=11.5
Q ss_pred HHHHHHHHHHcCCCEEEeC
Q 002585 529 LKEKATELSSLGFSVIWLP 547 (904)
Q Consensus 529 I~ekLdYLk~LGVnaI~L~ 547 (904)
+.+.++-++++|++.|.|.
T Consensus 16 l~e~~~~~~e~G~~~vEl~ 34 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYL 34 (254)
T ss_pred HHHHHHHHHHcCCCEEEec
Confidence 4445555566677777664
No 272
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=20.78 E-value=1.6e+02 Score=35.33 Aligned_cols=61 Identities=10% Similarity=0.091 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEEeeccc
Q 002585 530 KEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGDVVLNH 598 (904)
Q Consensus 530 ~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD~V~NH 598 (904)
.+.|+.+++.|++.|.+-- |+.+. .....++.. .+.++..+.|+.++++||.+..++++..
T Consensus 287 ~ell~~l~~aG~~~v~iGi--ES~~~-----~~L~~~~K~-~t~~~~~~ai~~l~~~Gi~~~~~~I~G~ 347 (497)
T TIGR02026 287 ADILHLYRRAGLVHISLGT--EAAAQ-----ATLDHFRKG-TTTSTNKEAIRLLRQHNILSEAQFITGF 347 (497)
T ss_pred HHHHHHHHHhCCcEEEEcc--ccCCH-----HHHHHhcCC-CCHHHHHHHHHHHHHCCCcEEEEEEEEC
Confidence 4678889999999999842 33321 112233333 3678899999999999999999999853
No 273
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=20.68 E-value=3.5e+02 Score=30.11 Aligned_cols=62 Identities=19% Similarity=0.222 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCCCCCcccCCCcCCCCCCHHHHHHHHHHHHHcCCEEEEE
Q 002585 525 WYMELKEKATELSSLGFSVIWLPPPTESVSPEGYMPRDLYNLSSRYGNIDELKDVVNKFHDVGMKILGD 593 (904)
Q Consensus 525 dl~GI~ekLdYLk~LGVnaI~L~PIfes~s~hGYd~~Dy~~IDp~lGt~edlk~LV~aAH~~GIkVILD 593 (904)
+...+.+.+..+++.|++.|=+.--....... + ...-..=+.+.|++++++||++|+.|.+=
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~-----~--~~~~~~~~~e~l~~~~~~A~~~g~~v~~H 179 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPG-----D--PPPDTQFSEEELRAIVDEAHKAGLYVAAH 179 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCC-----C--CCcccCcCHHHHHHHHHHHHHcCCEEEEE
Confidence 46778889998889999999655311111101 0 01111225789999999999999997753
No 274
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=20.67 E-value=30 Score=37.39 Aligned_cols=46 Identities=24% Similarity=0.420 Sum_probs=0.0
Q ss_pred eEEEEE-cCCCCCe-------EEEeeeecCCCCCcccCCCCCCCCcce-eechhhcc
Q 002585 303 TLLNLE-TDLTGDV-------VVHWGVCRDDSKNWEIPAEPYPPETIV-FKNKALRT 350 (904)
Q Consensus 303 ~~v~~~-td~~~~~-------vlHWgv~~~~~~~W~~pp~~~~p~~~~-~~~~a~~T 350 (904)
+.+.++ ++.|+++ .|||+||+ +-+=..|-++..|.... -++-|+|+
T Consensus 93 isgqLdLs~~~e~I~~PildGLLHWaVcp--sa~A~Dpfp~~~~~~~lSPqrlaLEa 147 (257)
T PF12031_consen 93 ISGQLDLSDYPESIARPILDGLLHWAVCP--SAEAQDPFPTAGPHSPLSPQRLALEA 147 (257)
T ss_pred eeeeeecccCchHHHHHHHHHHHHHHhcc--chhccCCCCCCCCCCCCCHHHHHHHH
No 275
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=20.59 E-value=1.4e+02 Score=36.75 Aligned_cols=75 Identities=12% Similarity=0.065 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcCCC---CCCCC---CcccCCCcCCCC-----CCHHHHHHHHHHHHHcCCEEEE
Q 002585 524 RWYMELKEKATELSSLGFSVIWLPPPTESV---SPEGY---MPRDLYNLSSRY-----GNIDELKDVVNKFHDVGMKILG 592 (904)
Q Consensus 524 Gdl~GI~ekLdYLk~LGVnaI~L~PIfes~---s~hGY---d~~Dy~~IDp~l-----Gt~edlk~LV~aAH~~GIkVIL 592 (904)
.++..+...+..|+++||.. .|-=+-... .+-.. -+.||-+||..| +...-++.++.-||..||+||.
T Consensus 536 ~~~~~~~~~~~~l~~~G~~i-alDdfG~g~ss~~~L~~~~~l~~d~iKid~~~~~~~~~~~~~~~~i~~~a~~l~~~via 614 (660)
T PRK11829 536 QDLDEALRLLRELQGLGLLI-ALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNLPEDDAIARIISCVSDVLKVRVMA 614 (660)
T ss_pred cCHHHHHHHHHHHHhCCCEE-EEECCCCchhhHHHHhccCCCCCcEEEECHHHHhcccCCHHHHHHHHHHHHHcCCeEEE
Confidence 46778888999999999974 332111111 11222 567788888543 3445678888999999999999
Q ss_pred Eeecccc
Q 002585 593 DVVLNHR 599 (904)
Q Consensus 593 D~V~NHt 599 (904)
.+|=+..
T Consensus 615 egVEt~~ 621 (660)
T PRK11829 615 EGVETEE 621 (660)
T ss_pred ecCCCHH
Confidence 9987643
No 276
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=20.52 E-value=4.2e+02 Score=28.86 Aligned_cols=39 Identities=13% Similarity=-0.059 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhccCccEEEe-ccccccccchHHHHHHhc
Q 002585 657 RKDIKEWLCWLRNEIGYDGWRL-DFVRGFWGGYVKDYLEAT 696 (904)
Q Consensus 657 r~~i~~~l~~Wi~e~GIDGfRl-D~a~~~~~~f~~~~~~~~ 696 (904)
.+++.+.++... ++|+|.+++ |.+..+.+.-+.++++.+
T Consensus 142 ~~~~~~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~lv~~l 181 (268)
T cd07940 142 LDFLIEVVEAAI-EAGATTINIPDTVGYLTPEEFGELIKKL 181 (268)
T ss_pred HHHHHHHHHHHH-HcCCCEEEECCCCCCCCHHHHHHHHHHH
Confidence 366777777777 899999998 777766666666655544
Done!