Your job contains 1 sequence.
>002586
MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKI
NLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR
KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRI
SFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLR
ESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIP
DVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS
KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQ
LDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRT
KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL
VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCW
DDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREP
RKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKL
FRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYY
GIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKA
SAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNAFPALEQQFRQG
LRMY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002586
(904 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2006822 - symbol:RDR1 "AT1G14790" species:3702... 2579 3.8e-268 1
TAIR|locus:2136068 - symbol:RDR2 "RNA-dependent RNA polym... 1767 4.2e-182 1
UNIPROTKB|Q8LHH9 - symbol:SHL2 "Probable RNA-dependent RN... 1464 5.4e-150 1
TAIR|locus:2114633 - symbol:RDR6 "AT3G49500" species:3702... 1437 3.9e-147 1
UNIPROTKB|G4NJ50 - symbol:MGG_02748 "RNA-dependent RNA po... 1078 4.3e-109 1
POMBASE|SPAC6F12.09 - symbol:rdp1 "RNA-directed RNA polym... 880 4.1e-88 1
WB|WBGene00004510 - symbol:rrf-3 species:6239 "Caenorhabd... 830 8.7e-83 2
WB|WBGene00004509 - symbol:rrf-2 species:6239 "Caenorhabd... 532 2.4e-71 3
ASPGD|ASPL0000040001 - symbol:rrpC species:162425 "Emeric... 668 2.2e-68 2
WB|WBGene00004508 - symbol:rrf-1 species:6239 "Caenorhabd... 526 3.4e-68 3
DICTYBASE|DDB_G0289659 - symbol:rrpA "RNA-directed RNA po... 371 8.5e-57 2
DICTYBASE|DDB_G0291249 - symbol:rrpB "RNA-directed RNA po... 363 1.1e-56 2
WB|WBGene00001214 - symbol:ego-1 species:6239 "Caenorhabd... 526 8.9e-49 2
ASPGD|ASPL0000071805 - symbol:rrpB species:162425 "Emeric... 226 2.8e-42 4
DICTYBASE|DDB_G0280963 - symbol:rrpC "RNA-directed RNA po... 279 4.1e-26 2
TAIR|locus:2052040 - symbol:AT2G19910 species:3702 "Arabi... 144 1.5e-17 5
TAIR|locus:2052020 - symbol:AT2G19930 species:3702 "Arabi... 161 7.8e-17 5
TAIR|locus:2052030 - symbol:AT2G19920 species:3702 "Arabi... 138 5.1e-08 5
>TAIR|locus:2006822 [details] [associations]
symbol:RDR1 "AT1G14790" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0016441
"posttranscriptional gene silencing" evidence=ISS] [GO:0009615
"response to virus" evidence=IMP] [GO:0009751 "response to
salicylic acid stimulus" evidence=IEP] [GO:0060148 "positive
regulation of posttranscriptional gene silencing" evidence=IMP]
[GO:0000165 "MAPK cascade" evidence=RCA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009617 "response to
bacterium" evidence=RCA] [GO:0009862 "systemic acquired resistance,
salicylic acid mediated signaling pathway" evidence=RCA]
[GO:0009867 "jasmonic acid mediated signaling pathway"
evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0031348
"negative regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0010025
"wax biosynthetic process" evidence=IGI] InterPro:IPR007855
Pfam:PF05183 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006952
GO:GO:0010025 GO:GO:0009751 GO:GO:0003723 GO:GO:0009615
GO:GO:0031047 EMBL:AC006917 UniGene:At.70434 GO:GO:0003968
EMBL:AY148431 EMBL:AK228731 EMBL:AJ011977 IPI:IPI00542699
RefSeq:NP_172932.1 UniGene:At.27823 ProteinModelPortal:Q9LQV2
SMR:Q9LQV2 STRING:Q9LQV2 PaxDb:Q9LQV2 PRIDE:Q9LQV2
EnsemblPlants:AT1G14790.1 GeneID:838044 KEGG:ath:AT1G14790
TAIR:At1g14790 eggNOG:NOG307726 HOGENOM:HOG000239464
InParanoid:Q9LQV2 KO:K11699 OMA:YEDYITE PhylomeDB:Q9LQV2
ProtClustDB:CLSN2682981 Genevestigator:Q9LQV2 GO:GO:0060148
PANTHER:PTHR23079 Uniprot:Q9LQV2
Length = 1107
Score = 2579 (912.9 bits), Expect = 3.8e-268, P = 3.8e-268
Identities = 502/673 (74%), Positives = 563/673 (83%)
Query: 216 STLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYA 275
S LR+GI+IGD+KFEFLAFSSSQLRE+SAWMFA +TAA IR WMG+F IRNVAKYA
Sbjct: 437 SVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYA 496
Query: 276 ARLGQSFSSSKETLSVHMDEIEIIPDVKI-EIGKTKYVFSDGIGKVSAEFARKVASKCGL 334
ARLGQSFSSS+ETL+V DEIE+IPDV+I +G T+YVFSDGIGK+SAEFARKVA KCGL
Sbjct: 497 ARLGQSFSSSRETLNVRSDEIEVIPDVEIISLG-TRYVFSDGIGKISAEFARKVARKCGL 555
Query: 335 KDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNR 394
+ PSAFQIRYGGYKGVVA DP SSKKLSLR SM K+ESE TKLDVLAWSKYQPC++NR
Sbjct: 556 TEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNR 615
Query: 395 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICG 454
QLI+LLSTLG+ D +FEKKQRE V +LDAILT PL+A EAL LM+PGENTNILK L++CG
Sbjct: 616 QLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCG 675
Query: 455 YKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGA 514
YKPDAEPFLSMMLQ FRASKLLELRTKTRIFI GRSMMGCLDETRTL YGQV VQ S
Sbjct: 676 YKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDP 735
Query: 515 GYRQLHGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVF 574
G I+ G VVVAKNPCLHPGDVRVL+AVNVPAL+HMVDCVVF
Sbjct: 736 ---MRPGRRF-----------IITGPVVVAKNPCLHPGDVRVLQAVNVPALNHMVDCVVF 781
Query: 575 PQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEE 634
PQKG+RPHPNECSGSDLDGDIYFVCWD EL+PP+ PMDYTP + LDHDV IE+VEE
Sbjct: 782 PQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEE 841
Query: 635 YFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHL 694
YF NYIVNDSLGIIANAHT FAD+EP KA S+PC++LA+KFS AVDFPKTGV A IP HL
Sbjct: 842 YFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHL 901
Query: 695 YVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDG 754
YVKEYPDFMEKPDKPTYES+NVIGKLFR VK+ AP I+ FT +VA +SYD DMEVDG
Sbjct: 902 YVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKSYDKDMEVDG 961
Query: 755 FEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVR 814
FE+++D+A Y K NYD+KLGNLMDYYGIKTEAEIL+G IM+MSKSFTKRRDAE+IG AVR
Sbjct: 962 FEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVR 1021
Query: 815 ALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYD 874
ALRKE + F + S+ E++ AKASAWYHVTYH YWG YN+G+NRDHFLSF WCVYD
Sbjct: 1022 ALRKETLSLF---NASEEEENESAKASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYD 1078
Query: 875 RLVEIKKDKTSIG 887
+LV IKK T++G
Sbjct: 1079 KLVRIKK--TNLG 1089
Score = 1811 (642.6 bits), Expect = 9.1e-187, P = 9.1e-187
Identities = 354/515 (68%), Positives = 421/515 (81%)
Query: 1 MELPYRLELPDFKENFAYYKESE-DRFVLETGSAYSRSLD-LVPIVGPPDGIALPYEILF 58
+ELP L +PDF+ENFA Y E F++E+GS+YS + + LVP+V PP G +LP+EILF
Sbjct: 225 LELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILF 284
Query: 59 KINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQ 118
K+N LVQN C++GP LD +FYRL++ + ++ I+H L+KL+HL ECCYEP+ WL D+
Sbjct: 285 KLNTLVQNACLSGPALDLDFYRLLNQKKYDRAL--IDHCLEKLFHLGECCYEPAHWLRDE 342
Query: 119 YRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFL 178
Y+K+++ P SP ISLDDGLVY++RVQVTP+RVYF GPE+NVSNRVLRH+ + I+NFL
Sbjct: 343 YKKWISKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFL 402
Query: 179 RISFIDEDLDKIHSTDLSPRGSSATDXXXXXXXXXXLSTLRNGILIGDRKFEFLAFSSSQ 238
R+SF+DEDL+K+ S DLSPR S+ S LR+GI+IGD+KFEFLAFSSSQ
Sbjct: 403 RVSFVDEDLEKVRSMDLSPRSSTQR---RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQ 459
Query: 239 LRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI 298
LRE+SAWMFA +TAA IR WMG+F IRNVAKYAARLGQSFSSS+ETL+V DEIE+
Sbjct: 460 LRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV 519
Query: 299 IPDVKI-EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP 357
IPDV+I +G T+YVFSDGIGK+SAEFARKVA KCGL + PSAFQIRYGGYKGVVA DP
Sbjct: 520 IPDVEIISLG-TRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDP 578
Query: 358 TSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREA 417
SSKKLSLR SM K+ESE TKLDVLAWSKYQPC++NRQLI+LLSTLG+ D +FEKKQRE
Sbjct: 579 NSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREV 638
Query: 418 VRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLE 477
V +LDAILT PL+A EAL LM+PGENTNILK L++CGYKPDAEPFLSMMLQ FRASKLLE
Sbjct: 639 VDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLE 698
Query: 478 LRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQIS 512
LRTKTRIFI GRSMMGCLDETRTL YGQV VQ S
Sbjct: 699 LRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYS 733
>TAIR|locus:2136068 [details] [associations]
symbol:RDR2 "RNA-dependent RNA polymerase 2" species:3702
"Arabidopsis thaliana" [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
[GO:0009751 "response to salicylic acid stimulus" evidence=IEP]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA;IMP] [GO:0016458 "gene silencing" evidence=IMP]
[GO:0007267 "cell-cell signaling" evidence=RCA;IMP] [GO:0016246
"RNA interference" evidence=RCA;IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0010495 "long-distance posttranscriptional gene
silencing" evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0010014 "meristem initiation" evidence=RCA]
[GO:0010073 "meristem maintenance" evidence=RCA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR007855
Pfam:PF05183 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161531
GO:GO:0005730 GO:GO:0050832 GO:GO:0007267 GO:GO:0003723
GO:GO:0030422 EMBL:AF080120 EMBL:AL049876 GO:GO:0010495
GO:GO:0003968 HOGENOM:HOG000239464 KO:K11699
ProtClustDB:CLSN2682981 PANTHER:PTHR23079 IPI:IPI00535843
PIR:T01920 RefSeq:NP_192851.1 UniGene:At.43417
ProteinModelPortal:O82504 SMR:O82504 STRING:O82504 PaxDb:O82504
PRIDE:O82504 EnsemblPlants:AT4G11130.1 GeneID:826714
KEGG:ath:AT4G11130 TAIR:At4g11130 eggNOG:NOG252917
InParanoid:O82504 OMA:SKCAARM PhylomeDB:O82504
Genevestigator:O82504 Uniprot:O82504
Length = 1133
Score = 1767 (627.1 bits), Expect = 4.2e-182, P = 4.2e-182
Identities = 377/886 (42%), Positives = 541/886 (61%)
Query: 11 DFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPD-GIALPYEILFKINLLVQNGCV 69
D YY+E G ++ + +VP++ G+ PYEILF++N LV +
Sbjct: 249 DIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQKI 308
Query: 70 AGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTS-RSK 128
+ L ++ L+ R +S+ L KL+ CY+P ++ Q + + +
Sbjct: 309 S--LFAASDMELIKILRG-MSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHS 365
Query: 129 PSSPAISL-DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDL 187
P+S L + ++ R VTPS++Y GPE+ +N V+++F + +F+R++F++ED
Sbjct: 366 PASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDW 425
Query: 188 DKIHSTDLSPRGSSA--TDXXXXXXXXXXLSTLRNGILIGDRKFEFLAFSSSQLRESSAW 245
K+ + LS LS L GI +G ++FEFLAFS+SQLR +S W
Sbjct: 426 SKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVW 485
Query: 246 MFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE 305
MFAS + A +IREWMG FR+IR+++K AAR+GQ FS+S++TL V ++E IPD+++
Sbjct: 486 MFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVT 545
Query: 306 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL 365
Y FSDGIGK+S FA++VA KCGL + PSAFQIRYGGYKGV+A D +S +KLSL
Sbjct: 546 TDGADYCFSDGIGKISLAFAKQVAQKCGLS-HVPSAFQIRYGGYKGVIAVDRSSFRKLSL 604
Query: 366 RDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL 425
RDSM K++S L+V W++ PCFLNR++I LLSTLGI D +FE Q + L +L
Sbjct: 605 RDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNML 664
Query: 426 TDPLKAQEALELMSPGENT-NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 484
D A L+ +S GEN+ N+L ++L+ GY P +EP+LSMML+ S+L EL+++ RI
Sbjct: 665 EDRDAALNVLQKLS-GENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRI 723
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGEXXXXXXXXXXXXXIVQGLVVVA 544
+P GR ++GC+DE L YGQV+V+++ +L +V G VVV
Sbjct: 724 LVPKGRILIGCMDEMGILEYGQVYVRVT-LTKAELKSRDQSYFRKIDEETSVVIGKVVVT 782
Query: 545 KNPCLHPGDVRVLKAVNVPALHHM--VDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDD 602
KNPCLHPGD+RVL A+ +DC++FPQKG RPHPNECSG DLDGD +FV WD+
Sbjct: 783 KNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDE 842
Query: 603 ELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRK 662
++IP + DPPMDY ++ +DHDV +E++ ++F +Y+++D+LG+I+ AH V ADR+P K
Sbjct: 843 KIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEK 902
Query: 663 ARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFR 722
ARS+ CL+LA S AVDF KTG PAE+P L +E+PDF+E+ +KPTY S++V GKL+R
Sbjct: 903 ARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYR 962
Query: 723 AVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGI 782
AVK VA YD +E GFE I+ A H+ Y KL +LM YYG
Sbjct: 963 AVKSSLAQRKPEAESEDTVA---YDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGA 1019
Query: 783 KTEAEILTGSIMKMSKSFTKRRDA------EAIGMAVRALRKEARAWFKEKSGSDTEDDA 836
E EILTG I+K + + R + + I ++V+ L KEA WF EKS D E
Sbjct: 1020 ANEEEILTG-ILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWF-EKSCED-EQQK 1076
Query: 837 YAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKD 882
ASAWY+VTY+P++ ++ + FLSFPW V D L++IK +
Sbjct: 1077 KKLASAWYYVTYNPNH---RDEKLT---FLSFPWIVGDVLLDIKAE 1116
>UNIPROTKB|Q8LHH9 [details] [associations]
symbol:SHL2 "Probable RNA-dependent RNA polymerase SHL2"
species:39947 "Oryza sativa Japonica Group" [GO:0010492
"maintenance of shoot apical meristem identity" evidence=IMP]
[GO:0016246 "RNA interference" evidence=IMP] InterPro:IPR007855
Pfam:PF05183 GO:GO:0005634 GO:GO:0016246 GO:GO:0003723
GO:GO:0048440 GO:GO:0048366 GO:GO:0010492 GO:GO:0010267
EMBL:AP008207 GO:GO:0048544 GO:GO:0009616 GO:GO:0003968
eggNOG:NOG307726 HOGENOM:HOG000239464 PANTHER:PTHR23079 OMA:SCAEQGN
EMBL:AB353923 EMBL:AP004357 RefSeq:NP_001043229.1 UniGene:Os.30747
EnsemblPlants:LOC_Os01g34350.1 GeneID:4323938 Gramene:Q8LHH9
ProtClustDB:CLSN2691477 BRENDA:2.7.7.48 Uniprot:Q8LHH9
Length = 1218
Score = 1464 (520.4 bits), Expect = 5.4e-150, P = 5.4e-150
Identities = 334/858 (38%), Positives = 489/858 (56%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 111
L + +LF +N LV G + L F+ L+ V+++ + + + + C
Sbjct: 352 LKFPLLFMVNALVHKGIINQHQLTPEFFSLLGRSEENVNVAALRDFWGDKFPVFDACGRL 411
Query: 112 SRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFR 171
+ L R P + D V R+ +TP+R Y PE+ SNRVLRH+
Sbjct: 412 KKALNRVARN-------PKLLCSKVGDDHAEVRRLVITPTRAYCLPPEVERSNRVLRHYH 464
Query: 172 RDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDXXXXXXXXXXLST-------LRNGILI 224
D FLR++F+DE + +++ L+ + + L G +
Sbjct: 465 EVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFHM 524
Query: 225 GDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSS 284
RK+ FLAFSS+QLR+ SAW FA T IR+WMG F +NVAK+AAR+GQ FSS
Sbjct: 525 CGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKWMGRFTS-KNVAKHAARMGQCFSS 583
Query: 285 SKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQI 344
+ T+++ DE++ D ++ +Y+FSDGIGK++ + A +VA + L DNPPSA+QI
Sbjct: 584 TYATVTMRPDEVDESFD---DVVHNEYIFSDGIGKITPDLALEVAERLQLTDNPPSAYQI 640
Query: 345 RYGGYKGVVAA--DPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLST 402
R+ G+KGV+A +L LR SMRK+ES L+V++W+K+QP FLNRQ+I LLS+
Sbjct: 641 RFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLVLEVVSWTKFQPGFLNRQIIILLSS 700
Query: 403 LGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPF 462
L + D IF + Q + L+ IL+D A E L S ++ N +L G++P EP
Sbjct: 701 LNVPDSIFWQMQETMLSNLNNILSDRDVAFEVLTT-SCADDGNTAALMLSAGFEPRTEPH 759
Query: 463 LSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGE 522
L ML R+++L +L K RIF+P GR +MGCLDE L GQ F++ + +
Sbjct: 760 LKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGVLEQGQCFIRATVPSLNSYFVK 819
Query: 523 XXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPH 582
++ G VV+AKNPCLHPGDVR+L+AV+VP LHH+VDC+VFPQKG RPH
Sbjct: 820 HGSRFSSTDKNTEVILGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPH 879
Query: 583 PNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDHDVQIEDVEEYFTNYI 640
NE SGSDLDGD+YFV WD++LIPP + PMDY+P ++ QL V D+ ++F +
Sbjct: 880 ANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKNM 939
Query: 641 VNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYP 700
++++LG I NAH V AD A E C+ LAE + AVDFPKTG A +PPHL K YP
Sbjct: 940 ISENLGRICNAHVVHADLSEYGAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKPKVYP 999
Query: 701 DFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRS---YDPDMEVDGFED 757
DFM K D +Y+S+ ++G+L+R++++ A + + ++EV + YD D+EV G D
Sbjct: 1000 DFMGKEDGQSYKSEKILGRLYRSIQE-ASNGDVV---SQEVCTPNDLPYDIDLEVPGASD 1055
Query: 758 HIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD--AEAIGMAVRA 815
+ A K +YD +L L+ Y ++TEAE++TG I + K+ +K++ + + A A
Sbjct: 1056 FLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHITFLVKNSSKKQGDIKDRLKTAYSA 1115
Query: 816 LRKEARAWFKE------KSGSDTEDDAYA-KASAWYHVTYHPDYWGCYNQGM---NRDHF 865
LRKE ++ F+ + G D ++ Y KASAWY VTYHP W ++G+ + +
Sbjct: 1116 LRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPK-WVEKSRGILGPDGEEI 1174
Query: 866 ---LSFPWCVYDRLVEIK 880
LSF W D L IK
Sbjct: 1175 PASLSFAWIPVDYLARIK 1192
>TAIR|locus:2114633 [details] [associations]
symbol:RDR6 "AT3G49500" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0016441
"posttranscriptional gene silencing" evidence=TAS] [GO:0030422
"production of siRNA involved in RNA interference" evidence=TAS]
[GO:0048366 "leaf development" evidence=IGI] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IMP] [GO:0051607 "defense response to virus" evidence=IMP]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IMP] [GO:0009616 "virus induced gene silencing"
evidence=IMP] [GO:0031047 "gene silencing by RNA" evidence=IMP]
[GO:0048440 "carpel development" evidence=IGI] [GO:0048467
"gynoecium development" evidence=IMP] [GO:0048544 "recognition of
pollen" evidence=IMP] InterPro:IPR007855 Pfam:PF05183 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AC012329 GO:GO:0003723
GO:GO:0048440 GO:GO:0048366 GO:GO:0010492 GO:GO:0010267
GO:GO:0048544 GO:GO:0003887 GO:GO:0009616 EMBL:AL132964
GO:GO:0003968 eggNOG:NOG307726 HOGENOM:HOG000239464 KO:K11699
ProtClustDB:CLSN2682981 PANTHER:PTHR23079 EMBL:AF239718
EMBL:AF268093 IPI:IPI00524423 RefSeq:NP_190519.1 UniGene:At.65263
ProteinModelPortal:Q9SG02 SMR:Q9SG02 MINT:MINT-7014695
STRING:Q9SG02 PaxDb:Q9SG02 PRIDE:Q9SG02 EnsemblPlants:AT3G49500.1
GeneID:824112 KEGG:ath:AT3G49500 TAIR:At3g49500 InParanoid:Q9SG02
OMA:SCAEQGN PhylomeDB:Q9SG02 Genevestigator:Q9SG02 Uniprot:Q9SG02
Length = 1196
Score = 1437 (510.9 bits), Expect = 3.9e-147, P = 3.9e-147
Identities = 334/835 (40%), Positives = 481/835 (57%)
Query: 48 DGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKEC 107
+GI+ +EI+F +N ++ G L F+ L+ V+I+ ++H C
Sbjct: 324 EGIS--FEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQPKDVNIASLKHL---------C 372
Query: 108 CYEPSRWLTDQYRKY-MTSRSKPSSPAI----SLDDGLVYVHRVQVTPSRVYFCGPEINV 162
Y+ R + D Y++ + +P + + + + R+ +TP+R Y PE+ +
Sbjct: 373 TYK--RPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDISEIRRLVITPTRAYCLPPEVEL 430
Query: 163 SNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS----PRGSSATDXXXXXXXXXXL--- 215
SNRVLR ++ + FLR++F+DE + I+S LS P T
Sbjct: 431 SNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQKTYVFKRVK 490
Query: 216 STLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYA 275
S L +G + RK+ FLAFS++QLR+ SAW FA ++I+ WMG F++ +NVAK A
Sbjct: 491 SILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKFKD-KNVAKCA 549
Query: 276 ARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL 334
AR+G FSS+ T+ V E++ +PD++ + YVFSDGIG ++ + A +V K L
Sbjct: 550 ARMGLCFSSTYATVDVMPHEVDTEVPDIE----RNGYVFSDGIGTITPDLADEVMEKLKL 605
Query: 335 KDN-PPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCF 391
+ P A+QIRY G+KGVVA P+ S +L+LRDSM+K+ S+ T L++ +W+++QP F
Sbjct: 606 DVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEICSWTRFQPGF 665
Query: 392 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL 451
LNRQ+I+LLS LG+ DEIF Q + +L+ IL D A E L S E N +L
Sbjct: 666 LNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTA-SCAEQGNTAAIML 724
Query: 452 ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI 511
G+KP EP L ML + R ++L LR K+RIF+ +GR +MGCLDE L +GQ F+Q+
Sbjct: 725 SAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHGQCFIQV 784
Query: 512 SGAGYRQLHGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDC 571
S + +V+G V +AKNPCLHPGDVR+L+AV+VP LHHM DC
Sbjct: 785 SKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQLHHMYDC 844
Query: 572 VVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD--PPMDYTPAQSMQLDHDVQI 629
++FPQKG RPH NE SGSDLDGD+YFV WD +LIPP + P M Y A+ L V
Sbjct: 845 LIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSLGRAVNH 904
Query: 630 EDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAE 689
+D+ ++F + N+ LG I NAH V ADR A E CL LAE + AVDFPKTG
Sbjct: 905 QDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPKTGKIVS 964
Query: 690 IPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRS---Y 746
+P HL K YPDFM K D TY+S ++G+L+R VK++ + ++E S Y
Sbjct: 965 MPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDA--EASSEESTDPSAIPY 1022
Query: 747 DPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDA 806
D +E+ GFED I +A HK YD +L L+ Y ++ E EI+TG I M K +K++
Sbjct: 1023 DAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQGE 1082
Query: 807 --EAIGMAVRALRKEARAWFKE-----KSGSDTEDDA-YAK-ASAWYHVTYHPDY 852
E + + +L+KE R F+E ++ S+ E + Y K ASAWYHVTYHP++
Sbjct: 1083 LKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEW 1137
Score = 439 (159.6 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 114/299 (38%), Positives = 161/299 (53%)
Query: 611 PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQ 670
P M Y A+ L V +D+ ++F + N+ LG I NAH V ADR A E CL
Sbjct: 886 PAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLL 945
Query: 671 LAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPH 730
LAE + AVDFPKTG +P HL K YPDFM K D TY+S ++G+L+R VK++
Sbjct: 946 LAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDE 1005
Query: 731 TS-CIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEIL 789
+ + + + YD +E+ GFED I +A HK YD +L L+ Y ++ E EI+
Sbjct: 1006 DAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIV 1065
Query: 790 TGSIMKMSKSFTKRRDA--EAIGMAVRALRKEARAWFKE-----KSGSDTEDDA-YAK-A 840
TG I M K +K++ E + + +L+KE R F+E ++ S+ E + Y K A
Sbjct: 1066 TGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKA 1125
Query: 841 SAWYHVTYHPDYWGCYNQGMNRD---H--FLSFPWCVYDRLVEIK---KDKTSIGNAFP 891
SAWYHVTYHP++ + + D H LSF W D L IK ++ SI +A P
Sbjct: 1126 SAWYHVTYHPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARIKIRSREMGSIDSAKP 1184
>UNIPROTKB|G4NJ50 [details] [associations]
symbol:MGG_02748 "RNA-dependent RNA polymerase 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR007855 Pfam:PF05183 EMBL:CM001237
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 RefSeq:XP_003721007.1
EnsemblFungi:MGG_02748T0 GeneID:5050479 KEGG:mgr:MGG_02748
Uniprot:G4NJ50
Length = 1407
Score = 1078 (384.5 bits), Expect = 4.3e-109, P = 4.3e-109
Identities = 262/780 (33%), Positives = 406/780 (52%)
Query: 50 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 109
+ L +E+ +++ + + +A P + F + R + +E+ +D+ L Y
Sbjct: 371 VQLTWEVRYQLEACISHRMLAEPNITLEFLEKLSEMRPTKARIMLEYVVDRNVKL----Y 426
Query: 110 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 169
P + D+ S P L +V VTPS +Y P + +NRVLRH
Sbjct: 427 NPMQLFKDEG----ASTYWPDITPEELPQYCTMTRKVTVTPSTMYLSSPMVETTNRVLRH 482
Query: 170 FRRDIDNFLRISFIDE-DLDKIHSTDLSPRGSSATDXXXXXXXXXXLSTLRNGILIGDRK 228
+ D FLR+ F DE ++H+ P A D L+NGI IGDR
Sbjct: 483 YNEHKDRFLRVQFTDELPTGRLHA----PNDLGADDEIFSRVYR----VLKNGIHIGDRH 534
Query: 229 FEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 288
++FLAF SSQ+RE+S + F +T IR WMG F IRNV KYAARLGQ FS+++
Sbjct: 535 YKFLAFGSSQMRENSTYFFCDAGDVTCDSIRAWMGRFSHIRNVGKYAARLGQCFSTTRSI 594
Query: 289 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGG 348
V M I+ IPD++ K Y F+DG+GK+S+ +A ++ L D PSAFQ R GG
Sbjct: 595 DRVAMPWIKTIPDIE----KNGYCFTDGVGKISSLWAVVISENLKL-DYIPSAFQFRMGG 649
Query: 349 YKGVVAA-DPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWD 407
KGV+ + +++ +R S K+E++ ++L+V+ S + LNRQ IS+L++LG+ +
Sbjct: 650 CKGVLVVWEDVKGQEIHIRPSQLKFETDHSRLEVIRCSHFSVASLNRQTISVLTSLGVKN 709
Query: 408 EIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAEPFLSMM 466
E+FE E + + + + D A L + + + TN L L+ G+ EPF+ M
Sbjct: 710 EVFESMLAEQLAKYNRAMEDATAAMTLLTQYVDENQMTNTLARLVKAGFMESHEPFVCTM 769
Query: 467 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGEXXXX 526
L+ +R + L+ K R+ + G ++GC+DET+TL+ + S +L+G
Sbjct: 770 LRLWRTWSVKTLKEKARLVVEKGAFVLGCVDETKTLHGHFTHIPASPNQRPRLNGNMKLP 829
Query: 527 XXXX------XXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 580
++ GL +V +NP LHPGD+RV++A++VP L H+ D VVF Q G R
Sbjct: 830 EIFLQVPDGPSRDYKVITGLCLVGRNPSLHPGDIRVVQAIDVPQLRHIRDVVVFAQTGDR 889
Query: 581 PHPNECSGSDLDGDIYFVCWDDELIP-PQQD--PPMDYTPAQSMQLDHDVQIEDVEEYFT 637
P CSG DLDGD +FV WD+ L+P P Q P Y P + +LD +V +D+ ++F
Sbjct: 890 DIPGMCSGGDLDGDDFFVLWDERLLPLPSQRNYKPASYHPPPARELDREVTADDLCQFFV 949
Query: 638 NYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVK 697
Y+ N SL IA+AH AD+ A+ E CL+LA S+AVD+PKTGVPA I P L
Sbjct: 950 TYMKNFSLPRIAHAHLAQADKYG--AKDEKCLELAYLHSLAVDYPKTGVPAAIRPRLMPN 1007
Query: 698 EYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFED 757
E+P FMEK + Y S+ ++GKL+ VK + H + F ++ + D
Sbjct: 1008 EFPHFMEKA-RGRYHSRKILGKLYDQVKPVNFHPAYEMPFDVKILSLYGELSQHGDLGPK 1066
Query: 758 HIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALR 817
+ +A K YD + +M + I TE E+ + ++ + ++ + E +G L+
Sbjct: 1067 LLREARKLKTLYDQSIMRIMGQHEIATEFEVFSAFVLSSRRVGSQYKLGEIVGQQSATLK 1126
Score = 485 (175.8 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 125/371 (33%), Positives = 196/371 (52%)
Query: 536 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDI 595
++ GL +V +NP LHPGD+RV++A++VP L H+ D VVF Q G R P CSG DLDGD
Sbjct: 845 VITGLCLVGRNPSLHPGDIRVVQAIDVPQLRHIRDVVVFAQTGDRDIPGMCSGGDLDGDD 904
Query: 596 YFVCWDDELIP-PQQD--PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAH 652
+FV WD+ L+P P Q P Y P + +LD +V +D+ ++F Y+ N SL IA+AH
Sbjct: 905 FFVLWDERLLPLPSQRNYKPASYHPPPARELDREVTADDLCQFFVTYMKNFSLPRIAHAH 964
Query: 653 TVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYE 712
AD+ A+ E CL+LA S+AVD+PKTGVPA I P L E+P FMEK + Y
Sbjct: 965 LAQADKYG--AKDEKCLELAYLHSLAVDYPKTGVPAAIRPRLMPNEFPHFMEKA-RGRYH 1021
Query: 713 SQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYK 772
S+ ++GKL+ VK + H + F ++ + D + +A K YD
Sbjct: 1022 SRKILGKLYDQVKPVNFHPAYEMPFDVKILSLYGELSQHGDLGPKLLREARKLKTLYDQS 1081
Query: 773 LGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRAL----RKEARAWFKEKS 828
+ +M + I TE E+ + ++ + ++ + E +G L R++ A + S
Sbjct: 1082 IMRIMGQHEIATEFEVFSAFVLSSRRVGSQYKLGEIVGQQSATLKTVFREKCIAALETVS 1141
Query: 829 G----SDTEDDAYAK-ASAWYHVTYHP---DYWGCYNQGMNRDH----FLSFPWCVYDR- 875
G + +A+ A Y VT C +G+ + ++FPW ++D+
Sbjct: 1142 GRTGIKPRDIEAFGPFVVAMYKVTDEEIKIALHECKTRGVKANPKSMPLITFPW-IFDQI 1200
Query: 876 LVEIKKDKTSI 886
LV++ K+++
Sbjct: 1201 LVQLVTGKSNL 1211
>POMBASE|SPAC6F12.09 [details] [associations]
symbol:rdp1 "RNA-directed RNA polymerase Rdp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005721 "centromeric heterochromatin" evidence=IDA] [GO:0005724
"nuclear telomeric heterochromatin" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0030702 "chromatin silencing at
centromere" evidence=IMP] [GO:0031047 "gene silencing by RNA"
evidence=IMP] [GO:0031048 "chromatin silencing by small RNA"
evidence=IDA] [GO:0031060 "regulation of histone methylation"
evidence=IMP] [GO:0031380 "nuclear RNA-directed RNA polymerase
complex" evidence=IDA] [GO:0031934 "mating-type region
heterochromatin" evidence=IDA] [GO:0034613 "cellular protein
localization" evidence=IMP] [GO:0045141 "meiotic telomere
clustering" evidence=IMP] [GO:0071276 "cellular response to cadmium
ion" evidence=IMP] [GO:0071585 "detoxification of cadmium ion"
evidence=IMP] InterPro:IPR007855 Pfam:PF05183 PomBase:SPAC6F12.09
GO:GO:0005829 EMBL:CU329670 GO:GO:0034613 GenomeReviews:CU329670_GR
GO:GO:0071276 GO:GO:0071585 GO:GO:0003723 GO:GO:0030702
GO:GO:0000070 GO:GO:0031048 GO:GO:0005721 GO:GO:0031934
GO:GO:0005724 GO:GO:0045141 GO:GO:0031060 GO:GO:0031380
GO:GO:0003968 eggNOG:NOG307726 KO:K11699 PANTHER:PTHR23079
PIR:T11660 RefSeq:NP_593295.1 IntAct:O14227 STRING:O14227
EnsemblFungi:SPAC6F12.09.1 GeneID:2542198 KEGG:spo:SPAC6F12.09
OMA:RISAQNT OrthoDB:EOG44QX81 NextBio:20803268 Uniprot:O14227
Length = 1215
Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
Identities = 245/780 (31%), Positives = 394/780 (50%)
Query: 141 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDL-DKIHSTDLSPRG 199
+++ ++ VTP+ + + NRV+R+F+ + F+R+ DE KI RG
Sbjct: 452 IHIKKLYVTPTTLRIVEDSLEAGNRVIRNFKDFANRFMRVQITDEYYKQKI-------RG 504
Query: 200 SSATDXXXXXXXXXXLSTLRN-GILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEI 258
S D + L GI +G++ +EFLAF +SQLRE A+ FAS L A +I
Sbjct: 505 GS--DGFRNEKLYSRIQQLLTYGIKVGNQIYEFLAFGNSQLREHGAYFFASGSDLNAKQI 562
Query: 259 REWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIG 318
REWMG+F EI +V+KYAAR+GQ FS++KE +D I + D+ + + F+DG+G
Sbjct: 563 REWMGDFSEINSVSKYAARMGQCFSTTKEINRFCVD-ISLQDDIV----RNNHCFTDGVG 617
Query: 319 KVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVA-ADPTSSK--KLSL---RDSMRKY 372
S R+++ + D PSAFQ R GGYKGV++ A PT + + +L R S K+
Sbjct: 618 MASLSVIRRLSLEVKNHDMFPSAFQFRMGGYKGVLSLAPPTKLEYHQGNLVFPRRSQDKF 677
Query: 373 ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 432
+S + L+V+ S++ LN QLI+LL LG+ +F + R + +++ + K+
Sbjct: 678 KSFHSTLEVIKISRFSNAHLNMQLITLLEGLGVEKTVFLELTRSQLSKMNESINSKQKSI 737
Query: 433 EAL-ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRS 491
L + + +T I+ + + G+ + F +L + L ++ K ++ +P G
Sbjct: 738 LMLRDNVDEYHSTLIIADFIQAGFLERDDAFTENLLNLYYEWVLRLIKEKQKVSVPKGAY 797
Query: 492 MMGCLDETRTL--NYGQVFVQISGAGYRQLHGEXXXXXXXXXXX--XXIVQGLVVVAKNP 547
++G DET TL +Y + + + Q+ ++ GL +VA+NP
Sbjct: 798 LLGVADETGTLKGHYDDAVLSVPEI-FIQITDTSTSFGSYSTGKLKTRVIVGLCIVARNP 856
Query: 548 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 607
LHPGDVRV KAV L H+ + +VFP G R P CSG DLDGD Y V WD L+P
Sbjct: 857 SLHPGDVRVCKAVRCDELMHLKNVIVFPTTGDRSIPAMCSGGDLDGDEYTVIWDQRLLPK 916
Query: 608 QQD-PPM-DYTPAQSMQ-LDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFA---DREPR 661
+ PP+ + +P +S+ L+ I+ V+E+F NYI DSLG+I+NA +A D P
Sbjct: 917 IVNYPPLLESSPKKSIDFLEGKPLIDSVKEFFVNYIKYDSLGLISNAWKAWAHDHDNNPE 976
Query: 662 KARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLF 721
CL+LAE S AVDF K+GV ++ + K YPDFM+K ++ S+ +GK+F
Sbjct: 977 GIFGNVCLELAEMHSKAVDFAKSGVACKMQAKYHPKRYPDFMQKTKTRSFRSETAVGKIF 1036
Query: 722 RAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFE-DHIDDAIYHKGNYDYKLGNLMDYY 780
R + + + YDP M++ F+ ++++ A K +YD L ++M +
Sbjct: 1037 RYAARFQRESGRPATYNP-IMNTVYDPCMKLPRFKTEYLNVAEEVKKHYDNDLRSIMARF 1095
Query: 781 GIKTEAEILTGSIM---KMSKSFTKRRDAEAIGMAVRALRKEARAWFKEK---SGSDTED 834
I TE E+ T I+ ++K+ + E + L+K+ + EK S D
Sbjct: 1096 DISTEYEVYTAFILFKDDLAKTVNEYGLREEVSFQFDLLKKKYTQEYLEKCALSNQSAFD 1155
Query: 835 DA-YA-KASAWYHVTYHPDYWGCYNQGMN--RDHFLSFPWCVYDRLVEIKKDKTSIGNAF 890
+ Y + ++ TY Y N + +SFP+ RL ++ + N F
Sbjct: 1156 SSEYEERINSAVAATYDVTYDQRVKSVGNGTTEVLISFPYLFSSRLCQLSRKAMLTANNF 1215
>WB|WBGene00004510 [details] [associations]
symbol:rrf-3 species:6239 "Caenorhabditis elegans"
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007855 Pfam:PF05183 EMBL:Z48334 GO:GO:0003968
PANTHER:PTHR23079 EMBL:Z66500 GeneTree:ENSGT00390000016620
RefSeq:NP_495713.2 IntAct:G5EE53 EnsemblMetazoa:F10B5.7
GeneID:174315 KEGG:cel:CELE_F10B5.7 CTD:174315 WormBase:F10B5.7
OMA:HISKAKI Uniprot:G5EE53
Length = 1765
Score = 830 (297.2 bits), Expect = 8.7e-83, Sum P(2) = 8.7e-83
Identities = 230/728 (31%), Positives = 367/728 (50%)
Query: 118 QYRKYMTSRS-KPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN 176
QY + + S + A L V V +V VTPSR+ PE+ + NRV+R F D
Sbjct: 653 QYERLLKGESLQDVGLAKPLPKNCVSVAKVIVTPSRILLMAPEVMMVNRVVRRFGPDYA- 711
Query: 177 FLRISFIDEDLDKIHSTDLSPRGSSATDXXXXXXXXXXLSTLRNGILIGDRKFEFLAFSS 236
LR F D++L ++ D S D TL+NGI + DR + FL +S+
Sbjct: 712 -LRCVFRDDNLGRLAIRDFSINN---IDHMSNIVTEGIYLTLKNGIQVADRVYSFLGWSN 767
Query: 237 SQLRESSAWMFASRYGL-------TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 289
SQ+R+ +++A R T +IR WMG+FR+ +V K +R+GQ F+ ++ T+
Sbjct: 768 SQMRDQGCYLYAPRVNALTGEVTGTVEDIRVWMGDFRDAISVPKMMSRMGQCFTQAQPTV 827
Query: 290 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGY 349
+ + PD++ + + KY FSDG G++S + A ++ LK+ P+ FQ+R+ G+
Sbjct: 828 RLERHHWIVEPDIEGGV-ENKYCFSDGCGRISIKLATHISKILQLKE-VPACFQVRFKGF 885
Query: 350 KGVVAADPT-----SSKKLSLRDSMRKYES---ELTK--LDVLAWSKYQPCFLNRQLISL 399
KG++ DPT + K+ R S +K+ EL L+V+ ++ P LNR I++
Sbjct: 886 KGILVIDPTIDDIINMPKVIFRKSQQKFGEGGGELQDEYLEVVKYAMPSPVCLNRPFITI 945
Query: 400 LSTLG----------IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKE 449
L + I + + +RE + ++ + A+E + + + N +
Sbjct: 946 LDQVSEKQSASSHRRITNRVHYYLERELCSLSNMLINENQAAEELVNRTNLAIDWNAASK 1005
Query: 450 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQV 507
G++ +P + ML + ++ +K +IF+P GRSM G +DET L YGQV
Sbjct: 1006 R--AGFELSVDPLIRDMLFSIYRYNIIHHISKAKIFLPPSLGRSMYGVVDETGLLQYGQV 1063
Query: 508 FVQISGAGYRQLHGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH 567
F+Q S + RQ + G V++ KNPC PGDVRV AV PAL H
Sbjct: 1064 FIQYSPS-IRQTSNRPI-----------LKTGKVLITKNPCHVPGDVRVFDAVWQPALAH 1111
Query: 568 MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDV 627
+VD VVFPQ G RPHP+E +GSDLDGD Y + WD E++ + M + + + + D +
Sbjct: 1112 LVDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQEMLLDYNEEAMVFPSSSAAEEDKEP 1171
Query: 628 QIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVP 687
+D+ E+F Y+ DS+G +++AH +AD E C +A K ++AVDFPK+GVP
Sbjct: 1172 TTDDMVEFFLRYLQQDSIGRMSHAHLAYADLHG--LFHENCHAIALKCAVAVDFPKSGVP 1229
Query: 688 AE-IPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLF-TK-EVARR 744
AE + + PD+M KP Y S + G+L R + + + F T+ V R
Sbjct: 1230 AEPLSSFEQCEMTPDYMMSGGKPMYYSTRLNGQLHRKARKVE---EVLEEFETRGSVFER 1286
Query: 745 SYD----PDMEVDGF---EDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMS 797
YD P+ +VD F E + + + Y ++ L+D YGI+ EA +++G +
Sbjct: 1287 EYDKLICPE-DVDVFFGNEIKLVQTLTLRDEYVDRMQQLLDEYGIEDEASVVSGHAASIK 1345
Query: 798 KSFTKRRD 805
+ RD
Sbjct: 1346 RLAGMERD 1353
Score = 43 (20.2 bits), Expect = 8.7e-83, Sum P(2) = 8.7e-83
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 837 YAKASAWYHVTY-HPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKK 881
+ K WY V Y P N+ R S PW +D L ++++
Sbjct: 1406 HEKIRQWYFVAYVQPKI----NKA-GRCIGQSLPWVAWDALCDLRR 1446
>WB|WBGene00004509 [details] [associations]
symbol:rrf-2 species:6239 "Caenorhabditis elegans"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] InterPro:IPR007855 Pfam:PF05183 GO:GO:0003968
PANTHER:PTHR23079 GeneTree:ENSGT00390000016620 EMBL:AL132848
EMBL:Z81571 RefSeq:NP_493057.1 ProteinModelPortal:G5EFA8
EnsemblMetazoa:M01G12.12 GeneID:173092 KEGG:cel:CELE_M01G12.12
CTD:173092 WormBase:M01G12.12 NextBio:878243 Uniprot:G5EFA8
Length = 1579
Score = 532 (192.3 bits), Expect = 2.4e-71, Sum P(3) = 2.4e-71
Identities = 154/470 (32%), Positives = 238/470 (50%)
Query: 362 KLSLRDSMRKYESELTKLDVLAWSKYQ-PCF--LNRQLISLLSTLGIWDEIFEKKQREAV 418
K R S K+E + D + KY P LN+ LI++L D++ E + E
Sbjct: 691 KCVFRPSQIKFEGKQILGDQVEMVKYSSPVLVALNKPLINIL------DQVSEMQSLECH 744
Query: 419 RQLDAILTDPLKAQE---ALELMSPGENTNILKEL----------LICGYKPDAEPFLSM 465
R++ + + + + Q A ++ N LKE I G+ EPF
Sbjct: 745 RRITSRIEELMDLQTLSFAKQMTDEACFRNKLKEFPRRIDIDYLRTIWGFTLSNEPFFRS 804
Query: 466 MLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGEX 523
+++ + + K +I IP+ GRSM+G +DET L YGQVFVQ + +R +
Sbjct: 805 LVKASIKFAITKQLFKEQIQIPSELGRSMLGVVDETGILQYGQVFVQYT-KNHRNILPPR 863
Query: 524 XXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHP 583
IV G V++ KNP + PGDVR+ +AV++P LHH+ D VVFPQ G RPHP
Sbjct: 864 DSNRKVLGSE--IVTGTVLLTKNPGIVPGDVRIFEAVDIPELHHLCDVVVFPQHGPRPHP 921
Query: 584 NECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDV-EEYFTNYIVN 642
+E +GSDLDGD Y V WD +L+ + + D+ +++Q I+D+ + + Y+
Sbjct: 922 DEMAGSDLDGDEYSVIWDQKLLLERNEEAFDFAVEKNLQTYEWEDIDDLMRDVYVEYLKK 981
Query: 643 DSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAE------------- 689
D +G+IAN+H +D+ +R C+ LA+K AVDF K+G P +
Sbjct: 982 DLVGLIANSHLHNSDQYGLTSRV--CMNLAKKSCQAVDFSKSGKPPDELQTTWKTDDATG 1039
Query: 690 --IPPHLYVKEYPDFMEKPDK-PTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSY 746
IPP + PD+ D P Y S + GKLFR + I + I E +
Sbjct: 1040 EMIPPER-AERVPDYHVGSDHMPKYVSPRLCGKLFREFQGI-DNAMKISEEKSEQYKIEV 1097
Query: 747 DPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKM 796
D + VDGFE++++DA +Y+ +L + MD YGI++E EI++G I++M
Sbjct: 1098 DESIRVDGFEEYMEDAKKQLASYNGQLKSTMDTYGIQSEGEIMSGCIIEM 1147
Score = 261 (96.9 bits), Expect = 2.4e-71, Sum P(3) = 2.4e-71
Identities = 106/410 (25%), Positives = 181/410 (44%)
Query: 4 PYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDG--IALPY--EILFK 59
PY L P +++A+ + F+ + + +D I DG A+ Y E L
Sbjct: 312 PY-LRYPTSSKSYAF-----ECFIYNCFPSKMKIIDAQSI-NENDGRQFAITYLIECLLS 364
Query: 60 INLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE-PSRWLTDQ 118
+V++ + + F L+ Y C E AL+ L +L + S W
Sbjct: 365 RGAIVKDQVLTDEICWGQFLGLITHYYLENDKLC-EAALEDLIYLIDGRKRIGSIWKCFH 423
Query: 119 Y--RKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN 176
+K + + +++G V +V TP+RV + PE+ + NRVLR+F RD +
Sbjct: 424 KICQKRLVMQLTNGMSEQEIEEGYQRVRKVIFTPTRVIYTPPEMIMGNRVLRNFDRDGTH 483
Query: 177 FLRISFIDEDLDKIHST------DLSPRGSSATDXXXXXXXXXXLSTLRNGILIGDRKFE 230
LR++F D++ K+ + D+ + L + + D
Sbjct: 484 VLRVTFRDDNNRKMRANATGELLDICVKKYLEHGIVVANRDFGFLGC--SSSQMRDNGAY 541
Query: 231 FLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET-L 289
F+ ++ R +A S++ +R +GNF +I N+ K ARLGQ F+ S+ T +
Sbjct: 542 FMVKNTDN-RHKNACKMNSKFKPNIDSVRNQLGNFLQIENIPKLMARLGQCFTQSRLTGV 600
Query: 290 SVHMDEIEIIPDVK--IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYG 347
S+ D + D+ ++Y FSDG+G +S EFA++V+ + PS FQ RY
Sbjct: 601 SLGPDNYCLTHDLSGGRSSNGSEYTFSDGVGMMSYEFAQEVSRLMSFGRSVPSCFQFRYR 660
Query: 348 GYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLI 397
G KGV+A DP K+ R+ K+ L+K + Q F +Q++
Sbjct: 661 GMKGVLAIDPLLDKE---RNWQEKHGISLSKNIKCVFRPSQIKFEGKQIL 707
Score = 62 (26.9 bits), Expect = 2.4e-71, Sum P(3) = 2.4e-71
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 839 KASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDK 883
KA AWY Y C + LSF W YD + +IK+ K
Sbjct: 1221 KAVAWYRACYE-----CA-KSTREPRKLSFAWIAYDVIAKIKETK 1259
>ASPGD|ASPL0000040001 [details] [associations]
symbol:rrpC species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] InterPro:IPR007855 Pfam:PF05183
EMBL:BN001306 GO:GO:0003968 eggNOG:NOG307726 KO:K11699
PANTHER:PTHR23079 EMBL:AACD01000048 RefSeq:XP_660321.1
EnsemblFungi:CADANIAT00010398 GeneID:2874470 KEGG:ani:AN2717.2
HOGENOM:HOG000166092 OMA:KHKARIP OrthoDB:EOG4VMJPG Uniprot:Q5B9R3
Length = 1203
Score = 668 (240.2 bits), Expect = 2.2e-68, Sum P(2) = 2.2e-68
Identities = 206/697 (29%), Positives = 336/697 (48%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVD-------PYRAPVSISCIEHALDKLYHL 104
LP+ ILF++ LV NG + ++ +L R P+S++ ++ L L
Sbjct: 286 LPFGILFQLQALVYNGYLPPNIVLRLTRKLASITKTRKVQGRRPISVNSMKR-LFNLIDW 344
Query: 105 KECCYEPSRWLTDQYRKYMTSRSKP----SSPAISLDDG---LVYVHRVQVTPSRVYFCG 157
+P + + + +T K +S A +L L ++HRV VTPSR+ G
Sbjct: 345 PSPFGDPEEFSIKRLLEVITGNDKDLGEGASEAEALFQPAPHLAHIHRVVVTPSRITLHG 404
Query: 158 PEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDXXXXXXXXXXLST 217
PE NR+LR F + F+R+ F DE+ + I+ +PR +++ +
Sbjct: 405 PETEPLNRILRRFPNHHEYFIRVQFCDENGEDIY---FNPRINNSL------IFARFKNV 455
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYGLTAA--EIREWMGNFREIRNVA 272
NG I R + FL FS S LR SAW F G + I + +G F EI + A
Sbjct: 456 FANGFQIAGRTYTFLGFSHSSLRSRSAWFSAPFIDDDGSLQSYFTIIKAIGRFSEITSPA 515
Query: 273 KYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS 330
+ AAR+GQ+FS + +++ + I + IPDV++ G+ VFSDG+G +SA+ +
Sbjct: 516 RCAARIGQAFSETPFAVNLKENGIRVLRIPDVQVG-GR---VFSDGVGTISAKAVDIIHG 571
Query: 331 KCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESE-LTKLDVL-AWSKY 387
++ P+ FQIR GG KG+++ DP K+ +R SM K++++ +++ + SK
Sbjct: 572 VLPPRNGAPTCFQIRLGGAKGMLSLDPRLRGSKICIRPSMTKFQTDDQVNVEICGSGSKP 631
Query: 388 QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNIL 447
P FLNRQ+I +L +G+ E F Q + QL ++ S + +
Sbjct: 632 IPLFLNRQVIKILEDMGVDREWFMTLQELRIEQLRKATATTKNTATFVKGQSVADCVKLY 691
Query: 448 KE-LLICGYKPDAE--PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNY 504
+ LL K D + PFL +++ +L L+ K RI + G ++ G +DET LN
Sbjct: 692 RLFLLFHNLKLDYKKIPFLRAVVEAMVLRELRLLKHKARIPVHKGITLYGVMDETGFLNE 751
Query: 505 GQVFVQISGAGYRQLHGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 564
+VFV Y+ + ++V ++P LH GD++ V P
Sbjct: 752 NEVFVT-----YQAMDRLAAPPQNCR----------LLVTRSPALHNGDIQYPYNVVPPK 796
Query: 565 LHHMV---DCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSM 621
H + +C+VF QKG R P++ SG DLDGD+Y + WD P + P +Y +
Sbjct: 797 GHPLQQQRNCIVFSQKGTRDLPSQLSGGDLDGDLYNIIWDPAAAPKRVFTPANYPRNPPL 856
Query: 622 QLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDF 681
+ V+ ED+ +F ++ +D LG+IA H + AD+ C +LA+ S AVDF
Sbjct: 857 DIKRVVEREDMANFFVEFMQSDRLGVIATKHMILADQMELGTSHSDCKKLAQLHSTAVDF 916
Query: 682 PKTGVPAEIPPHLYV-KEYPDFMEK-PDKPTYESQNV 716
KTG+P + +V + PDF+ P ++ QN+
Sbjct: 917 SKTGIPVRLKEMPFVNRSRPDFLAPGPLAKIHDRQNI 953
Score = 62 (26.9 bits), Expect = 2.2e-68, Sum P(2) = 2.2e-68
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 695 YVKEYPD--FMEKPDKPTYESQNVIGKLFRAVKD 726
YV YPD P Y S+ ++GKL+RA+ +
Sbjct: 959 YVHPYPDDDIDFSPVHKYYRSEKILGKLYRAINE 992
>WB|WBGene00004508 [details] [associations]
symbol:rrf-1 species:6239 "Caenorhabditis elegans"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS;IDA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017151
"DEAD/H-box RNA helicase binding" evidence=IPI] [GO:0005844
"polysome" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] InterPro:IPR007855 Pfam:PF05183
GO:GO:0005634 GO:GO:0048471 GO:GO:0005844 GO:GO:0030422 EMBL:Z78419
GO:GO:0003968 PANTHER:PTHR23079 UniGene:Cel.19452 GeneID:172523
KEGG:cel:CELE_F26A3.8 CTD:172523 GeneTree:ENSGT00390000016620
EMBL:AF159144 RefSeq:NP_001250555.1 ProteinModelPortal:G5ECM1
EnsemblMetazoa:F26A3.8a WormBase:F26A3.8a OMA:QIQIPKE
NextBio:875887 Uniprot:G5ECM1
Length = 1601
Score = 526 (190.2 bits), Expect = 3.4e-68, Sum P(3) = 3.4e-68
Identities = 153/479 (31%), Positives = 244/479 (50%)
Query: 358 TSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFL---NRQLISLLSTLGIWDEIFEK 412
TS K K R S K++++ D + K+ L N+ I++L D++ E
Sbjct: 704 TSMKMAKCLFRPSQIKFQAKAISGDQIEMVKFSSAVLVALNKPFINIL------DQVSEM 757
Query: 413 KQREAVRQLDAILTDPLKAQEALELMSPGENT---NILKEL----------LICGYKPDA 459
+ + +++ + + + + Q E T N LKE + G+ +
Sbjct: 758 QSLDCHKRITSRIEELMDRQILSFAKQMNEETFCRNKLKEFPRRIDIDNLRTMWGFTLSS 817
Query: 460 EPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISGAGYR 517
EPF +++ + + K +I IP+ GRSM+G +DET L YGQ+FVQ + +
Sbjct: 818 EPFFRSLIKASIKFSITKQLCKEQIQIPSELGRSMLGVVDETGRLQYGQIFVQYTKNYKK 877
Query: 518 QLHGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQK 577
+L IV G V++ KNPC+ PGDVR+ +AV++P LHHM D VVFPQ
Sbjct: 878 KLPPRDSNNKVHGSE---IVTGTVLLTKNPCIVPGDVRIFEAVDIPELHHMCDVVVFPQH 934
Query: 578 GMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDV--EEY 635
G RPHP+E +GSDLDGD Y V WD EL+ + + P D+ + +++ +D + DV E+
Sbjct: 935 GPRPHPDEMAGSDLDGDEYSVIWDQELLLERNEEPFDFA-VEKIKVPYDREKLDVLMREF 993
Query: 636 FTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAE------ 689
+ Y+ DS+G I+N+H +D+ +R C+ LA+K AVDF K+G P +
Sbjct: 994 YVTYLKLDSVGQISNSHLHNSDQYGLNSRV--CMDLAKKNCQAVDFTKSGQPPDPLETKW 1051
Query: 690 ---------IPPHLYVKEYPDF-MEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTK 739
IPP + PDF M P Y S + GKLFR + I + I++ +
Sbjct: 1052 RADPVTFEVIPPE-NPERIPDFHMGNERSPMYVSPRLCGKLFREFQAI---DNVIKISEE 1107
Query: 740 --EVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKM 796
E D + V GFE +++ A +Y+ +L ++M+ YGI++E EI++G I++M
Sbjct: 1108 RDEQYNIELDETIFVTGFERYMESAQKQLSSYNGQLRSIMENYGIRSEGEIMSGCIVEM 1166
Score = 231 (86.4 bits), Expect = 3.4e-68, Sum P(3) = 3.4e-68
Identities = 73/232 (31%), Positives = 110/232 (47%)
Query: 138 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHST---D 194
+G V +V TP+RV + PE + NRVLR F +D LR++F D++ K+ S
Sbjct: 459 EGYQRVRKVIFTPTRVIYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGK 518
Query: 195 LSPRGSSATDXXXXXXXXXXLSTL--RNGILIGDRKFEFLAFSSSQL-RESSAWMFASRY 251
L R ++ L N + + + + F+ QL R AS
Sbjct: 519 LLDRTANKYLEHGVRIANREYGFLGCSNSQMRDNGAYFMMRFTDKQLDRFYKCNPTASNI 578
Query: 252 GLTAA--EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK- 308
E+R +G F EI NV K ARLGQ F+ S+ T V + + + G+
Sbjct: 579 NFKPKIDEVRFQLGRFSEIENVPKLMARLGQCFTQSRLT-GVGLGRDDYCSTYDLTGGRA 637
Query: 309 ---TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP 357
++Y FSDG+G +S +FA++V+ PS FQIR+ G KGV+A +P
Sbjct: 638 TNGSEYTFSDGVGMMSYQFAQEVSQAMQFGKAVPSCFQIRFRGNKGVIAIEP 689
Score = 69 (29.3 bits), Expect = 3.4e-68, Sum P(3) = 3.4e-68
Identities = 24/80 (30%), Positives = 34/80 (42%)
Query: 831 DTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKK------DKT 884
D + + KA AWY Y C Q LSF W YD + ++K+ ++
Sbjct: 1232 DPDQEVRKKAVAWYRACYE-----CA-QSTREVRKLSFAWIAYDVIAKVKETNVLNNERM 1285
Query: 885 SIGNAFPA---LEQQFRQGL 901
IG A P LE+ +Q L
Sbjct: 1286 QIGGANPMYTFLEEHRKQYL 1305
Score = 39 (18.8 bits), Expect = 4.1e-48, Sum P(3) = 4.1e-48
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 158 PEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIH 191
P + N + HF + +R +ID D H
Sbjct: 209 PRVEGCNTCV-HFEVNCPPLIRKGYIDNDKSSFH 241
>DICTYBASE|DDB_G0289659 [details] [associations]
symbol:rrpA "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0289659
GO:GO:0005524 GenomeReviews:CM000154_GR GO:GO:0003676
EMBL:AAFI02000148 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_636093.1
ProteinModelPortal:Q54H25 EnsemblProtists:DDB0191515 GeneID:8627305
KEGG:ddi:DDB_G0289659 InParanoid:Q54H25 Uniprot:Q54H25
Length = 2417
Score = 371 (135.7 bits), Expect = 8.5e-57, Sum P(2) = 8.5e-57
Identities = 111/410 (27%), Positives = 195/410 (47%)
Query: 460 EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQL 519
+P++ +L + K+ ++ K I I + R ++G D T +L VFVQ L
Sbjct: 1487 DPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGVCDPTNSLPPNTVFVQ--------L 1538
Query: 520 HGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGM 579
E +++GLV+V KNPC HPGDVR LKAV+ L H+ + +VF KG
Sbjct: 1539 EEEDEDDDDDGRKYEKVIEGLVMVIKNPCTHPGDVRYLKAVDNIRLRHLRNVLVFSTKGD 1598
Query: 580 RPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYF--- 636
P+ E SGSDLDGD YF C+D LI + + Y +++ ++D + + F
Sbjct: 1599 VPNFKEISGSDLDGDRYFFCYDKSLIGNRSESETAYLVVETVS-NNDKKANVFNDPFALS 1657
Query: 637 TNYIVN---DSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPH 693
+ Y N LG + ++H +D+ A + +Q++++ +D+PKTG+ IP
Sbjct: 1658 SMYSTNAERQELGKLYHSHLAISDQYG--ANHKYSIQISKECFKEIDYPKTGIHGTIPKE 1715
Query: 694 LYVK----EYPDFMEKPDKPT--YESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYD 747
+ ++ YP +M++ + Y+S+ ++GK++ + + I F + S D
Sbjct: 1716 VNIRLQTVGYPHYMQRENSTRVYYQSKKIMGKMYDQIDQLV----YIGDFLPNI---SLD 1768
Query: 748 PDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMK--MSKSFTKRRD 805
VDG+E +++ A Y ++ +L+ +Y ++E I+ G + + +S +K
Sbjct: 1769 KSNLVDGYEIYLNSAKILYSQYKLQVHSLLRHYSAESEESIMIGFLDQGFISDKVSKDIK 1828
Query: 806 AEAIGMAVRALRKEARAWFKEKSGSDTED-------DAYAKASAWYHVTY 848
E ++ + + KE E+ + K SAWYHV Y
Sbjct: 1829 GEMKNDYIKIQQTFENEFLKEFGEQHKENCLLIHRVNIEKKVSAWYHVAY 1878
Score = 313 (115.2 bits), Expect = 8.5e-57, Sum P(2) = 8.5e-57
Identities = 105/380 (27%), Positives = 179/380 (47%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS-PRGSS 201
+ V +TPSR F P + S R +R F NF+ + ++E L+ + + P +
Sbjct: 1193 IRDVFITPSRTIFIQPTLQRSCRAVRKFGSS--NFIVVKIVNESLEPLQGVNNKHPLHEN 1250
Query: 202 ATDXXXXXXXXXXLSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 261
L GIL+G + + S+SQLRE S+W +++ G +I W
Sbjct: 1251 RIK-----------PILEGGILVGGEIYSYAGNSNSQLREYSSWFVSNQIGTHTVKI--W 1297
Query: 262 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 321
G + NV K+ +G FS++ T+++ + I I D+ + + F++G G++
Sbjct: 1298 SG-IEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQDIT----RNTHEFTEGCGEIG 1352
Query: 322 AEFARKVASKCGLKDNPPSAFQIRYGGYKGVV-----AADPTSSKKLSLRDSMRKYE--- 373
E A+ + + + A+Q+R GG KGV+ A DP+ + +R SM K+
Sbjct: 1353 PELAKHLNENYNFRPST-CAYQVRIGGNKGVLVVNNQAPDPSG---IYIRPSMVKFNPID 1408
Query: 374 --SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA 431
E L++ + S C LNRQ+ISLLSTLG D +F Q + Q+ I+ D +
Sbjct: 1409 CGDEHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNAS 1468
Query: 432 QEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRS 491
++A+ P EL Y+ +P++ +L + K+ ++ K I I + R
Sbjct: 1469 KQAIVEFFPDITEG---EL----YQ---DPYIRRILISLYKLKMERIQQKCHIEIKDSRM 1518
Query: 492 MMGCLDETRTLNYGQVFVQI 511
++G D T +L VFVQ+
Sbjct: 1519 LLGVCDPTNSLPPNTVFVQL 1538
Score = 38 (18.4 bits), Expect = 6.4e-28, Sum P(2) = 6.4e-28
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 376 LTKLDVLAWSKYQPCFLNRQLISLLSTL-GIWDEI---FEK---KQREAVRQLDAILTD 427
LT+LD+L S Q L +L+ L + G +++ FEK + R+ + L+ ++D
Sbjct: 586 LTRLDLLMQSTNQENELYNKLLELRYYISGQYEDRESNFEKGSTRYRKLISSLEYAISD 644
>DICTYBASE|DDB_G0291249 [details] [associations]
symbol:rrpB "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0291249
GO:GO:0005524 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 KO:K11699
PANTHER:PTHR23079 RefSeq:XP_635263.1 ProteinModelPortal:Q54EH7
EnsemblProtists:DDB0220017 GeneID:8628208 KEGG:ddi:DDB_G0291249
InParanoid:Q54EH7 OMA:NINERTN ProtClustDB:CLSZ2429575
Uniprot:Q54EH7
Length = 2403
Score = 363 (132.8 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 111/409 (27%), Positives = 189/409 (46%)
Query: 460 EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQL 519
+P++ +L + K+ ++ K I I + R ++G D T +L VFVQ+
Sbjct: 1502 DPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGVCDPTNSLPPNTVFVQLE------- 1554
Query: 520 HGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGM 579
E +++GLV+V KNPC HPGDVR LKAV+ L H+ + +VF KG
Sbjct: 1555 --EEDEDDDDGRKYEKVIEGLVMVIKNPCTHPGDVRYLKAVDNLRLRHLRNVLVFSTKGD 1612
Query: 580 RPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQL-DHDVQI-ED---VEE 634
P+ E SGSDLDGD YF C+D LI + Y +++ D + D +
Sbjct: 1613 VPNFKEISGSDLDGDRYFFCYDKSLIGNRSKSETAYLGDETVSNNDKKANVFNDPFALSS 1672
Query: 635 YFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPH- 693
++ + LG + N+H +D A E +Q++++ +D+PKTG+ IP
Sbjct: 1673 MYSTNVERQELGKMYNSHLAISDLFG--ANHEFSIQISKECFKEIDYPKTGIHGTIPKEA 1730
Query: 694 ---LYVKEYPDFMEKPDKPT--YESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDP 748
L K YP +M++ + Y+S+ ++GK++ + + I F + S D
Sbjct: 1731 NVWLKTKGYPHYMQRENSTRVYYQSKTIMGKMYDQIDQLV----YIGDFLPNI---SLDK 1783
Query: 749 DMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMK--MSKSFTKRRDA 806
VD +E +++ A Y ++ +L+ +Y ++E I+ G + + +S +K
Sbjct: 1784 SNLVDDYEIYLNSAKILYSQYKLQVHSLLRHYSAESEESIMIGFLDQGFISDKVSKDIKG 1843
Query: 807 EAIGMAVRALRKEARAWFKEKSGSDTED-------DAYAKASAWYHVTY 848
E ++ + + KE E+ + K SAWYHV Y
Sbjct: 1844 EMKNDYIKIQQTFENEFLKEFGEQHKENCLLIHRVNIEKKVSAWYHVAY 1892
Score = 320 (117.7 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 105/380 (27%), Positives = 181/380 (47%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS-PRGSS 201
+ V +TPSR F P + S R +R F NF+ + ++E L+ + + P +
Sbjct: 1208 IRDVFITPSRTIFIQPTLQRSCRAVRKFGSS--NFIMVKIVNESLEPLQGVNNKHPLHEN 1265
Query: 202 ATDXXXXXXXXXXLSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 261
L GIL+G + + + S+SQLRE S+W +++ G +I W
Sbjct: 1266 RIK-----------PILEGGILVGGKIYSYAGNSNSQLREYSSWFVSNQIGTHTVKI--W 1312
Query: 262 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 321
G + NV K+ +G FS++ T+++ + I I D+ + +VF++G G++
Sbjct: 1313 SG-IEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQDIT----RNTHVFTEGCGEIG 1367
Query: 322 AEFARKVASKCGLKDNPPSAFQIRYGGYKGVV-----AADPTSSKKLSLRDSMRKYE--- 373
E A+ + + + A+Q+R GG KG++ A DP+ + +R SM K+
Sbjct: 1368 PELAKHLNENYNFRPST-CAYQVRIGGNKGMLVVNNQAPDPSG---IYIRPSMVKFNPIV 1423
Query: 374 --SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA 431
E L++ + S C LNRQ+ISLLSTLG D +F Q + Q+ I+ D +
Sbjct: 1424 CGDEHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNAS 1483
Query: 432 QEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRS 491
++A+ P EL Y+ +P++ +L + K+ ++ K I I + R
Sbjct: 1484 KQAIVEFFPDITEG---EL----YQ---DPYIRRILISLYKLKMERIQQKCHIEIKDSRM 1533
Query: 492 MMGCLDETRTLNYGQVFVQI 511
++G D T +L VFVQ+
Sbjct: 1534 LLGVCDPTNSLPPNTVFVQL 1553
Score = 47 (21.6 bits), Expect = 5.3e-28, Sum P(2) = 5.3e-28
Identities = 18/82 (21%), Positives = 37/82 (45%)
Query: 236 SSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDE 295
S+ + ++S +MF SR + + M +++E N+ + + K+ S +D
Sbjct: 93 STTVNDNSYYMFDSRKHDLSVQRPYLMCSYKECYNIIGF-----YHMNPFKKVFSFRLDH 147
Query: 296 IEIIPDVKIEIGKTKYVFSDGI 317
+ I D K E K+ ++ I
Sbjct: 148 AKTILDFKYEDKPWKFFLNNPI 169
>WB|WBGene00001214 [details] [associations]
symbol:ego-1 species:6239 "Caenorhabditis elegans"
[GO:0007186 "G-protein coupled receptor signaling pathway"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0007276 "gamete generation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IGI] [GO:0031081
"nuclear pore distribution" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0070090 "metaphase plate"
evidence=IDA] InterPro:IPR007855 Pfam:PF05183 GO:GO:0009792
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0010171
GO:GO:0048477 GO:GO:0007283 GO:GO:0000910 GO:GO:0007281
GO:GO:0000794 GO:GO:0043186 GO:GO:0031081 EMBL:Z78419 GO:GO:0003968
PANTHER:PTHR23079 BRENDA:2.7.7.48 GeneTree:ENSGT00390000016620
EMBL:AF159143 PIR:T21381 RefSeq:NP_492132.1 UniGene:Cel.23243
ProteinModelPortal:G5EBQ3 IntAct:G5EBQ3 EnsemblMetazoa:F26A3.3
GeneID:172524 KEGG:cel:CELE_F26A3.3 CTD:172524 WormBase:F26A3.3
OMA:LRSMMEN NextBio:875891 GO:GO:0070090 Uniprot:G5EBQ3
Length = 1632
Score = 526 (190.2 bits), Expect = 8.9e-49, Sum P(2) = 8.9e-49
Identities = 152/474 (32%), Positives = 239/474 (50%)
Query: 356 DPTSSKKLSLRDSMRKYESEL---TKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEK 412
D + S R S K+ S+ +++++ +S P LN+ I++L + + +
Sbjct: 736 DSSWSLNCMFRPSQIKFISKRHPRDQVEIVKYSSPVPVALNKPFINILDQVSEMQSL--E 793
Query: 413 KQREAVRQLDAILTDPLKAQEALELMSPGENTNILKEL----------LICGYKPDAEPF 462
R +++ +L D A +++ N LKEL G+ +EPF
Sbjct: 794 CHRRVTNRIEELL-DRQMLSFAQQMVDETFCRNRLKELPRRVDIDYLRTTWGFTLSSEPF 852
Query: 463 L-SMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISGAGYRQL 519
S++ + + S +LR K +I IP GRSM+G +DET L YGQ+FVQ + + L
Sbjct: 853 FRSLIKASIKFSITRQLR-KEQIPIPCDLGRSMLGVVDETGRLQYGQIFVQYT----KNL 907
Query: 520 HGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGM 579
++ G V++ KNPC+ GDVR+ +AV++P LHHM D VVFPQ G
Sbjct: 908 ----ALKLPPKNAARQVLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHMCDVVVFPQHGP 963
Query: 580 RPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDV-EEYFTN 638
RPHP+E +GSDLDGD Y + WD +L+ + + P D+T + + +I+D+ E++
Sbjct: 964 RPHPDEMAGSDLDGDEYSIIWDQQLLLDKNEDPYDFTSEKQKASFKEDEIDDLMREFYVK 1023
Query: 639 YIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAE--------- 689
Y+ DS+G I+N+H +D+ AR C+ LA+K AVDF K+G P +
Sbjct: 1024 YLKLDSVGQISNSHLHNSDQYGLNARV--CMDLAKKNCQAVDFTKSGQPPDELERKWRKD 1081
Query: 690 ------IPPHLYVKEYPDF-MEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVA 742
IPP + PD+ M P Y S + GKLFR K I I E
Sbjct: 1082 EETGEMIPPER-AERVPDYHMGNDHTPMYVSPRLCGKLFREFKAIDDVLK-ISEERDEQV 1139
Query: 743 RRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKM 796
S D +++DG+ +++ A Y+ +L ++M+ YGIKTE E+ +G I+ M
Sbjct: 1140 EISIDETIKIDGYTEYMASAKNDLARYNAQLRSMMENYGIKTEGEVFSGCIVDM 1193
Score = 226 (84.6 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
Identities = 99/371 (26%), Positives = 167/371 (45%)
Query: 138 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 197
+G V ++ TP+RV + PE + NRVLR + D LRI+F D+D K+ +
Sbjct: 486 EGYQRVRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTN---- 541
Query: 198 RGSSATDXXXXXXXXXXLSTL-RN-GIL------IGDRKFEFLA-FSSSQLRESSAWMFA 248
+ S+ + ++ RN G L + D F+ +SSSQ RE ++
Sbjct: 542 KTSTMLEKTVNQYLKNGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQCREYER-IYQ 600
Query: 249 SRYGLT----AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 304
+ +T R+ +G F I N+ K ARLGQ F+ S+ + V+++ + +
Sbjct: 601 IKPPITFNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLS-GVNLERCTYMTTYDL 659
Query: 305 EIGKT----KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS 360
GK +Y FSDG+G +S FA+ V+ PS FQ R+ G KGV++ +P
Sbjct: 660 TGGKNLKGDEYTFSDGVGMMSYRFAQMVSEVMDFGKGVPSCFQFRFRGMKGVISIEP--- 716
Query: 361 KKLSLRDSMRKYESE--LTK-LDVLAWSKYQPCFLNRQLISLLSTLGIWDEI----FEKK 413
L D++R++ ++K D +WS C I +S D++ +
Sbjct: 717 ----LLDNLRQWSISYNISKPSDDSSWSLN--CMFRPSQIKFISKRHPRDQVEIVKYSSP 770
Query: 414 QREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRAS 473
A+ + + D + ++LE TN ++ELL A+ M+ +TF +
Sbjct: 771 VPVALNKPFINILDQVSEMQSLECHR--RVTNRIEELLDRQMLSFAQ---QMVDETFCRN 825
Query: 474 KLLELRTKTRI 484
+L EL + I
Sbjct: 826 RLKELPRRVDI 836
Score = 69 (29.3 bits), Expect = 8.9e-49, Sum P(2) = 8.9e-49
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 839 KASAWYHVTYHPDYWGCYNQG-MNRDHF-LSFPWCVYDRLVEIKKDKT 884
KA AWY CY + + R++ LSF W YD + ++K+DK+
Sbjct: 1268 KAVAWYRA--------CYEEARITRENKKLSFAWLAYDVIAKVKQDKS 1307
>ASPGD|ASPL0000071805 [details] [associations]
symbol:rrpB species:162425 "Emericella nidulans"
[GO:0005724 "nuclear telomeric heterochromatin" evidence=IEA]
[GO:0005721 "centromeric heterochromatin" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0031380 "nuclear RNA-directed
RNA polymerase complex" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] [GO:0045141 "meiotic telomere
clustering" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0031048 "chromatin silencing by
small RNA" evidence=IEA] [GO:0031060 "regulation of histone
methylation" evidence=IEA] [GO:0071585 "detoxification of cadmium
ion" evidence=IEA] [GO:0034613 "cellular protein localization"
evidence=IEA] [GO:0071276 "cellular response to cadmium ion"
evidence=IEA] [GO:0030702 "chromatin silencing at centromere"
evidence=IEA] InterPro:IPR007855 Pfam:PF05183 EMBL:BN001303
GO:GO:0003968 PANTHER:PTHR23079 EnsemblFungi:CADANIAT00005632
Uniprot:C8VAM8
Length = 869
Score = 226 (84.6 bits), Expect = 2.8e-42, Sum P(4) = 2.8e-42
Identities = 38/71 (53%), Positives = 53/71 (74%)
Query: 536 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDI 595
I++G+ ++A+NP LHPG +RV++AVN P LHH+ D VV P+ G R + CSGSDLDGD
Sbjct: 495 IIEGICILARNPSLHPGGIRVVRAVNAPGLHHLKDIVVLPRTGDRDIASMCSGSDLDGDD 554
Query: 596 YFVCWDDELIP 606
+ V WD +L+P
Sbjct: 555 FLVIWDQDLLP 565
Score = 219 (82.2 bits), Expect = 2.8e-42, Sum P(4) = 2.8e-42
Identities = 51/139 (36%), Positives = 83/139 (59%)
Query: 311 YVFSDGIGKVSAEFARKVASKCGLKD---NPPSAFQIRYGGYKGVVAADPTSS-KKLSLR 366
Y+FSDG+G++S A+ V S+ +K PPSA+Q R G KG++ P + +++ +R
Sbjct: 343 YIFSDGVGRISKFLAQIVKSELKIKTPTKEPPSAYQFRLVGCKGMLIVFPQARPQEVHIR 402
Query: 367 DSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD-AIL 425
S K+ + L+++ WS++ LNRQLI +LSTLGI D++F K + +R LD A+
Sbjct: 403 KSQFKFAALSQGLEIIRWSQFTVASLNRQLILVLSTLGITDKVFHLKLKTMLRNLDEAME 462
Query: 426 TDPLKAQEALELMSPGENT 444
+DP A + + P + T
Sbjct: 463 SDPKAAHLLRKYVDPNQVT 481
Score = 173 (66.0 bits), Expect = 1.6e-37, Sum P(4) = 1.6e-37
Identities = 52/160 (32%), Positives = 83/160 (51%)
Query: 317 IGKVSAEFAR-KVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS-KKLSLRDSMRKYES 374
I K A+ + ++ K K+ PPSA+Q R G KG++ P + +++ +R S K+ +
Sbjct: 352 ISKFLAQIVKSELKIKTPTKE-PPSAYQFRLVGCKGMLIVFPQARPQEVHIRKSQFKFAA 410
Query: 375 ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD-AILTDPLKA-- 431
L+++ WS++ LNRQLI +LSTLGI D++F K + +R LD A+ +DP A
Sbjct: 411 LSQGLEIIRWSQFTVASLNRQLILVLSTLGITDKVFHLKLKTMLRNLDEAMESDPKAAHL 470
Query: 432 --------QEALELMSP--GENTNILKELLICGYKPDAEP 461
Q L + P GE I++ + I P P
Sbjct: 471 LRKYVDPNQVTLTIYLPKNGEKYEIIEGICILARNPSLHP 510
Score = 104 (41.7 bits), Expect = 2.8e-42, Sum P(4) = 2.8e-42
Identities = 38/128 (29%), Positives = 62/128 (48%)
Query: 161 NVSNRVLRHFRRDIDNFLRISFID-EDLDKIHSTDLSPRGSSATDXXXXXXXXXXLSTLR 219
++SN V+R + DNFLR+ F D + + +IH+T D L
Sbjct: 247 DISNCVIRRYANLADNFLRVRFTDAKHIGRIHAT---------VDNTMDEVLTRIKRALA 297
Query: 220 NGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTA--AEIREWMGN---FRE-IRNVAK 273
NGI IG ++EFLAF +S S+ + G TA +I + GN F + + ++K
Sbjct: 298 NGITIGSTRYEFLAFGNSSSCFSTTRAIS---GCTAHVKKIDDIEGNGYIFSDGVGRISK 354
Query: 274 YAARLGQS 281
+ A++ +S
Sbjct: 355 FLAQIVKS 362
Score = 83 (34.3 bits), Expect = 2.8e-42, Sum P(4) = 2.8e-42
Identities = 47/148 (31%), Positives = 65/148 (43%)
Query: 714 QNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHI-------DDAIYH- 765
QN G L K P T+ +L+ V R + P++E+D F+ I DAIY
Sbjct: 595 QNAYGSLSYTQK---PSTTTRQLYDA-VGRIDFGPNIEMD-FDKRILNCNVEVHDAIYGF 649
Query: 766 ----KGNYDYKLGNLMDYYGIKTEAEI-LTGSIMKMSKSFTKRRDAEAIGMAVRALRKEA 820
K YD + + + IKTE E+ LT + D A+ +A+R K+
Sbjct: 650 ARRLKDEYDIAIRRITAQHEIKTEFEVWLT--------YYKFHEDIGAMSLALRENFKK- 700
Query: 821 RAWFKEKSGSDTEDDAYAKASAWYHVTY 848
RA+ EK G T D A A Y VTY
Sbjct: 701 RAF--EKVGGRTFDALAPLAVAMYRVTY 726
>DICTYBASE|DDB_G0280963 [details] [associations]
symbol:rrpC "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR007855 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF05183 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280963 GO:GO:0005524
GenomeReviews:CM000152_GR EMBL:AAFI02000040 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_640790.1
ProteinModelPortal:Q54UI6 STRING:Q54UI6 EnsemblProtists:DDB0216193
GeneID:8622843 KEGG:ddi:DDB_G0280963 InParanoid:Q54UI6 OMA:YELFNDY
Uniprot:Q54UI6
Length = 2285
Score = 279 (103.3 bits), Expect = 4.1e-26, Sum P(2) = 4.1e-26
Identities = 103/392 (26%), Positives = 181/392 (46%)
Query: 134 ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHST 193
I ++G V ++ + VTPSR+ P + + NR+LR F + F+ +F DE+L+
Sbjct: 1065 IQSNNGWVLINEIFVTPSRIVLKPPRLTLGNRILRKFSPE--KFILFNFTDENLEPFRGL 1122
Query: 194 DLSPRGSSATDXXXXXXXXXXLSTLRNGILI---GDRKFEFLAFSSSQLRESSAWMFASR 250
+ S S T NGI I +K+ F+ S SQ+R SAW
Sbjct: 1123 NKS---SPLTKTIERI--------FNNGIEIIQGSGKKYFFIGCSQSQVRNYSAWFVLED 1171
Query: 251 YGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK 310
W G E + K L FS++ ++ ++ +IE+IPD+ I K
Sbjct: 1172 KVTNEKSALNWSGIKYESLQMIKVFRNLCLLFSTTLKSQVIY--KIEMIPDI---ISKEG 1226
Query: 311 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK-KLSLRDSM 369
+ F++G G + ++ + + + A+QIR GG KGV+ + + L +R SM
Sbjct: 1227 HNFTEGCGFIGSKLVELINQQNNYNSST-CAYQIRLGGSKGVLVLNENIDEMSLQIRPSM 1285
Query: 370 RKYE---------SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQ 420
K+E E L++++ S C LNRQ I+LLS G+ D F + + Q
Sbjct: 1286 SKFELDYKSGQLDEEHKTLEIVSASTTSRCKLNRQAITLLSNAGVEDSTFLQMLEVELNQ 1345
Query: 421 LDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFL-SMMLQTFRASKLLELR 479
L D ++E L G+ + E Y+ + ++ S++L+ ++ SKL++++
Sbjct: 1346 NAQTLVDVNLSKELL-----GDFFQHITE-----YELFNDYYIRSILLKLYK-SKLIKIQ 1394
Query: 480 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI 511
K I + R+++G D + TL V++++
Sbjct: 1395 DKCWIEVKESRNLLGVCDTSGTLPEDTVYIEV 1426
Score = 271 (100.5 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 96/324 (29%), Positives = 161/324 (49%)
Query: 295 EIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVA 354
+IE+IPD+ I K + F++G G + ++ + + + A+QIR GG KGV+
Sbjct: 1214 KIEMIPDI---ISKEGHNFTEGCGFIGSKLVELINQQNNYNSST-CAYQIRLGGSKGVLV 1269
Query: 355 ADPTSSK-KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKK 413
+ + L +R SM K+E LD + + +++S +T K
Sbjct: 1270 LNENIDEMSLQIRPSMSKFE-----LDYKS-GQLDEEHKTLEIVSASTTSRC------KL 1317
Query: 414 QREAVRQL-DAILTDPLKAQEA-LELMSPGE---NTNILKELL------ICGYKPDAEPF 462
R+A+ L +A + D Q +EL + + N+ KELL I Y+ + +
Sbjct: 1318 NRQAITLLSNAGVEDSTFLQMLEVELNQNAQTLVDVNLSKELLGDFFQHITEYELFNDYY 1377
Query: 463 L-SMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG 521
+ S++L+ ++ SKL++++ K I + R+++G D + TL V++++ +L
Sbjct: 1378 IRSILLKLYK-SKLIKIQDKCWIEVKESRNLLGVCDTSGTLPEDTVYIEVE-----ELDP 1431
Query: 522 EXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRP 581
++ G V V KNPC HPGDVR LKA++ P L+ + + F GM P
Sbjct: 1432 ------IDNLMKPKVIIGRVAVLKNPCHHPGDVRFLKAIDHPPLNGKRNVLFFSTNGMVP 1485
Query: 582 HPNECSGSDLDGDIYFVCWDDELI 605
+ +CSGSDLDGD YFV +D LI
Sbjct: 1486 NFKQCSGSDLDGDRYFVIYDQTLI 1509
Score = 115 (45.5 bits), Expect = 4.1e-26, Sum P(2) = 4.1e-26
Identities = 44/190 (23%), Positives = 87/190 (45%)
Query: 628 QIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGV- 686
++ D+ Y N + LG I+N H +D E K S +++A + +I VD KT V
Sbjct: 1564 KLSDI--YLKN-VDKSKLGTISNTHLAISDIE--KVSSINSIKVAIQCAIEVDSVKTSVH 1618
Query: 687 ---PAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLF----RAVKDIAPHTSCIRLFTK 739
P ++ L K YP FM+ + T+E + + + R + I + F
Sbjct: 1619 GIIPRDVKSILKEKGYPHFMKIKNGSTFEYKGGNQRKYYISDRVIGKIYDSAENLLWFGD 1678
Query: 740 EVARRSYDPDMEVDGFEDHIDDAIYHKG-NYDYKLGNLMDYYGIKTEAEILTGSIMKMSK 798
+ D + V G++++++ + +Y K+ +++ +G ++E ++L G M
Sbjct: 1679 FLPEAKVDESLLVQGYKEYLNHENFTTYMDYKSKINSILRRFGAQSEEDLLIGF---MDP 1735
Query: 799 SFTKRRDAEA 808
F+++ EA
Sbjct: 1736 QFSEKLSIEA 1745
Score = 42 (19.8 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 824 FKEKSGSDTEDDAY 837
FK+ SGSD + D Y
Sbjct: 1487 FKQCSGSDLDGDRY 1500
>TAIR|locus:2052040 [details] [associations]
symbol:AT2G19910 species:3702 "Arabidopsis thaliana"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
InterPro:IPR007855 Pfam:PF05183 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0031047 EMBL:AC005169
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 IPI:IPI00534018
PIR:F84582 RefSeq:NP_179581.2 UniGene:At.52837 PaxDb:O82190
PRIDE:O82190 EnsemblPlants:AT2G19910.1 GeneID:816510
KEGG:ath:AT2G19910 TAIR:At2g19910 eggNOG:NOG279775
InParanoid:O82190 OMA:IFYSERA PhylomeDB:O82190
Genevestigator:O82190 Uniprot:O82190
Length = 992
Score = 144 (55.7 bits), Expect = 1.5e-17, Sum P(5) = 1.5e-17
Identities = 33/73 (45%), Positives = 44/73 (60%)
Query: 537 VQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD----CVVFPQKGMRPHPNECSGSDLD 592
+ G V+V +NP LH GD+ VLKA V AL V V FPQKG R +E +G D D
Sbjct: 636 ISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFD 695
Query: 593 GDIYFVCWDDELI 605
GD+YF+ + +L+
Sbjct: 696 GDMYFISRNPKLL 708
Score = 111 (44.1 bits), Expect = 1.5e-17, Sum P(5) = 1.5e-17
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 645 LGIIANAHTVFADREPRK-ARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFM 703
LGI+ T+ + K R + L+L + + A+D PK G ++PP L +K +P +M
Sbjct: 767 LGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYM 826
Query: 704 EKPDKPTYESQNVIGKLFRAV 724
E+ K + S +++G +F V
Sbjct: 827 ERDPKRDFRSTSILGLIFDTV 847
Score = 89 (36.4 bits), Expect = 1.5e-17, Sum P(5) = 1.5e-17
Identities = 59/229 (25%), Positives = 96/229 (41%)
Query: 304 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIR--YGGY--KGVVAADPT- 358
+ I K K + S+ I + F + CG PP Q R Y GY KG +
Sbjct: 419 VNIFKGKSMRSNNIQSKNLNFEGQ--GPCG--QEPPLLIQFRIFYNGYAVKGTFLTNKKL 474
Query: 359 SSKKLSLRDSMRK-YE-------SELTKLDVLAWSKY-QPCFLNRQLISLLSTLGIWDEI 409
+ + +R SM K YE S L+V+ S + L+R L++LLS G+ ++
Sbjct: 475 PPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNLVALLSYGGVPNDF 534
Query: 410 FEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQT 469
F R + + I A +A ++ G++ ++++ G D EP+L L
Sbjct: 535 FLNILRNTLEESKTIFYSERAAFKAA--INYGDD-QYTADMILVGIPLD-EPYLKDRLSY 590
Query: 470 FRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFV-----QISG 513
++ L+ R I +MG +D T L ++ V QISG
Sbjct: 591 LLKTERNALKAG-RFPIDESYYIMGTVDPTGELKENEICVILHSGQISG 638
Score = 48 (22.0 bits), Expect = 1.5e-17, Sum P(5) = 1.5e-17
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 219 RNGILIGDRKFEFLAFSSSQLRE 241
+NGI++G R++ F F E
Sbjct: 276 KNGIMVGLRRYRFFVFKDGGKEE 298
Score = 48 (22.0 bits), Expect = 1.5e-17, Sum P(5) = 1.5e-17
Identities = 27/103 (26%), Positives = 45/103 (43%)
Query: 235 SSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMD 294
S++ + + ++FA G + E R + + ++ Y +R S +K TL V M
Sbjct: 317 STASIDMQNPYIFA---GKSMHEARMHFMHVNTLSSLPNYMSRFSLILSKTK-TLEVDMT 372
Query: 295 EI--EIIPDV-------KIEIGKT--KYVFSDGIGKVSAEFAR 326
I E I D+ K + K + SDG G +S + AR
Sbjct: 373 GITFEQIDDIHCHDQDDKDVLDKNGKPCIHSDGTGYISEDLAR 415
Score = 41 (19.5 bits), Expect = 3.9e-16, Sum P(4) = 3.9e-16
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 253 LTAAEIREWMGNFREIRNVAKYAA---RLGQSFSSSKE 287
++ +IR+W +++ V+ AA RLGQ + S KE
Sbjct: 168 ISGDQIRKW----KDLPMVSYEAAVWNRLGQRYCSPKE 201
>TAIR|locus:2052020 [details] [associations]
symbol:AT2G19930 species:3702 "Arabidopsis thaliana"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
[GO:0009410 "response to xenobiotic stimulus" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=RCA] [GO:0010014 "meristem
initiation" evidence=RCA] [GO:0010075 "regulation of meristem
growth" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0048522 "positive regulation of cellular process"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR007855 Pfam:PF05183 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0031047 EMBL:AC005169
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 EMBL:AK229381
IPI:IPI00786210 PIR:H84582 RefSeq:NP_179583.3 UniGene:At.39772
EnsemblPlants:AT2G19930.1 GeneID:816512 KEGG:ath:AT2G19930
TAIR:At2g19930 HOGENOM:HOG000082682 OMA:LANYMAR
Genevestigator:O82188 Uniprot:O82188
Length = 977
Score = 161 (61.7 bits), Expect = 7.8e-17, Sum P(5) = 7.8e-17
Identities = 46/137 (33%), Positives = 71/137 (51%)
Query: 537 VQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD----CVVFPQKGMRPHPNECSGSDLD 592
+ G V+V +NP LH GD+ +LKA V AL V V FPQKG R +E +G D D
Sbjct: 625 ISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFD 684
Query: 593 GDIYFVCWDDELIP--PQQDPPMDYTP---AQSMQLDHDVQIEDVEE-----YFT-NYIV 641
GD+YF+ + EL+ +P + TP + S + + E++EE + T +
Sbjct: 685 GDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHA 744
Query: 642 NDSLGIIANAHTVFADR 658
++ +GI A++ DR
Sbjct: 745 SNVIGIAADSWLTIMDR 761
Score = 83 (34.3 bits), Expect = 7.8e-17, Sum P(5) = 7.8e-17
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 657 DREPRKAR-SEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQN 715
DR KA + L+L + + A+D PK G +P L +P +ME+ K ++S +
Sbjct: 768 DRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKK--FQSTS 825
Query: 716 VIGKLFRAVK 725
++G +F VK
Sbjct: 826 ILGLIFDFVK 835
Score = 70 (29.7 bits), Expect = 7.8e-17, Sum P(5) = 7.8e-17
Identities = 50/200 (25%), Positives = 84/200 (42%)
Query: 337 NPPSAFQIR--YGGY--KGVVAADPT-SSKKLSLRDSMRKYE--------SELTKLDVLA 383
+PP Q R Y GY KG + + + +R SM K S L+V+
Sbjct: 435 DPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVT 494
Query: 384 WSKY-QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGE 442
S + L++ L++LLS GI +E F + + +I + A A +
Sbjct: 495 TSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMD 554
Query: 443 NTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL 502
+ N + +L+ G D EP L L ++ +L+ ++ + +MG +D T L
Sbjct: 555 DQNAAQMILV-GIPLD-EPHLKNYLSILLKTEKNDLKAG-KLPVTESYYLMGTVDPTGAL 611
Query: 503 NYGQVFVQISGAGYRQLHGE 522
+V V I +G Q+ GE
Sbjct: 612 KEDEVCV-ILESG--QISGE 628
Score = 62 (26.9 bits), Expect = 7.8e-17, Sum P(5) = 7.8e-17
Identities = 30/90 (33%), Positives = 40/90 (44%)
Query: 251 YGLTAAEIREWMGNFREIRN---VAKYAARLGQSFSSSKETLSVHM-----DEIEII--- 299
Y LT I E +F + +A Y AR S +K TL V M D+I+ I
Sbjct: 323 YILTGKSIYEARMHFMHVHRAPTLANYMARFSLILSKTK-TLEVDMTGITFDQIDDIHCH 381
Query: 300 -PDVKIEIGKTKY--VFSDGIGKVSAEFAR 326
D K + K K + SDG G +S + AR
Sbjct: 382 DQDGKDVLDKNKKPCIHSDGTGYISEDLAR 411
Score = 55 (24.4 bits), Expect = 7.8e-17, Sum P(5) = 7.8e-17
Identities = 28/134 (20%), Positives = 53/134 (39%)
Query: 109 YEPSRWLTDQY-RKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVL 167
YE + W D+ R Y + + + D G + ++ V P+ Y + +L
Sbjct: 174 YEAAVW--DRLGRHYCPQKDRRM---LQWDSGKTHYYQCNVAPNGSYTFKVLSALQGPLL 228
Query: 168 RHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDXXXXXXXXXXLSTLRNGILIGDR 227
H + L D+++ + D+ SS+T ++ +NGI+IG R
Sbjct: 229 EHTGTHLHKVLG----DDNVLTVKFADVQK--SSSTYSIDHYFTYKGIA--KNGIMIGLR 280
Query: 228 KFEFLAFSSSQLRE 241
+++F F E
Sbjct: 281 RYQFFVFKDGGKEE 294
Score = 37 (18.1 bits), Expect = 2.6e-12, Sum P(5) = 2.6e-12
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 660 PRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKP 706
P + Q + DF K+ E P + + P F ++P
Sbjct: 812 PHYMERDKKFQSTSILGLIFDFVKSQTTEEPSPSSEISKLPCFEDEP 858
>TAIR|locus:2052030 [details] [associations]
symbol:AT2G19920 species:3702 "Arabidopsis thaliana"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
InterPro:IPR007855 Pfam:PF05183 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0031047 EMBL:AC005169
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 IPI:IPI00546115
PIR:G84582 RefSeq:NP_179582.2 UniGene:At.50085 PRIDE:O82189
EnsemblPlants:AT2G19920.1 GeneID:816511 KEGG:ath:AT2G19920
TAIR:At2g19920 eggNOG:NOG266676 InParanoid:O82189 OMA:MSIHEAR
PhylomeDB:O82189 Genevestigator:O82189 Uniprot:O82189
Length = 927
Score = 138 (53.6 bits), Expect = 5.1e-08, Sum P(5) = 5.1e-08
Identities = 43/133 (32%), Positives = 66/133 (49%)
Query: 541 VVVAKNPCLHPGDVRVLKAVNVPALHHMVDC----VVFPQKGMRPHPNECSGSDLDGDIY 596
V+V +NP LH GD+ +LKA V +L V V FPQKG R +E +G D DGD+Y
Sbjct: 629 VLVYRNPGLHFGDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMY 688
Query: 597 FVCWDDELIP---PQQ----DPPMD--YTPAQSMQLDHDVQIEDVEEYF--TNYIVNDSL 645
F+ + +L+ P + P YT Q +L + E++ + F T + + +
Sbjct: 689 FISRNPKLLEHYKPSEPWVSSSPRSKIYTGRQPSELSPEQLEEELFKIFLKTGFSPSSVI 748
Query: 646 GIIANAHTVFADR 658
G A++ DR
Sbjct: 749 GQAADSWLAIMDR 761
Score = 96 (38.9 bits), Expect = 0.00089, Sum P(5) = 0.00089
Identities = 33/121 (27%), Positives = 61/121 (50%)
Query: 615 YTPAQSMQLDHDVQIEDVEEYF--TNYIVNDSLGIIANAHTVFADR------EPRKARSE 666
YT Q +L + E++ + F T + + +G A++ DR E K ++E
Sbjct: 716 YTGRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFLTLGDENVKEKAE 775
Query: 667 ---PCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRA 723
L+L + + A+D PKTG +P + V +P +ME+ +K T++S +++G +F
Sbjct: 776 MKKKMLKLTDIYYDAIDAPKTGTEVNLPLDVKVDLFPHYMER-NK-TFKSTSILGLIFDT 833
Query: 724 V 724
V
Sbjct: 834 V 834
Score = 58 (25.5 bits), Expect = 5.1e-08, Sum P(5) = 5.1e-08
Identities = 25/87 (28%), Positives = 39/87 (44%)
Query: 252 GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIP----------- 300
G++ E R + + + A Y AR S +K+ L V M EI ++
Sbjct: 331 GMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKK-LEVDMTEITVMQIDDIHCHDQSN 389
Query: 301 -DVKIEIGKTKYVFSDGIGKVSAEFAR 326
DV + GK + + SDG G +S + AR
Sbjct: 390 NDVLDKNGKPR-IHSDGTGYISEDLAR 415
Score = 56 (24.8 bits), Expect = 5.1e-08, Sum P(5) = 5.1e-08
Identities = 46/188 (24%), Positives = 78/188 (41%)
Query: 338 PPSAFQIRY----GGYKGVVAADPT-SSKKLSLRDSMRK-YE-------SELTKLDVLAW 384
PP QIR KG+ + + + +R SM K Y+ S L+V+
Sbjct: 440 PPLLIQIRMFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTT 499
Query: 385 SKY-QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN 443
S + L++ L++LLS G+ ++ F + + I A +A ++
Sbjct: 500 SNPPKRAKLSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMDD 559
Query: 444 TNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT----RIFIPNGRSMMGCLDET 499
N L ++++ G D EP+L L SKLL+L ++ I +MG +D T
Sbjct: 560 KNAL-QMIMAGIPLD-EPYLKHYL-----SKLLKLEKDDLKAGKLPIDESYYLMGTVDPT 612
Query: 500 RTLNYGQV 507
L +V
Sbjct: 613 GELKEDEV 620
Score = 49 (22.3 bits), Expect = 5.1e-08, Sum P(5) = 5.1e-08
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 219 RNGILIGDRKFEFLAF 234
+NGI++G R+++F F
Sbjct: 276 KNGIMVGLRRYQFFVF 291
Score = 40 (19.1 bits), Expect = 5.1e-08, Sum P(5) = 5.1e-08
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 805 DAEAIGMAVRALRKE--ARAWFKEKSGSDTEDDAYAKASAWYHVT 847
D ++ ++ ++E + A FKE ++ Y KA A Y+VT
Sbjct: 885 DDDSCNEVIQKYKQEFYSAAGFKESK--KILEELYPKALALYNVT 927
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.414 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 904 881 0.00086 122 3 11 22 0.38 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 629 (67 KB)
Total size of DFA: 450 KB (2214 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 74.58u 0.15s 74.73t Elapsed: 00:00:04
Total cpu time: 74.59u 0.15s 74.74t Elapsed: 00:00:04
Start: Tue May 21 17:13:36 2013 End: Tue May 21 17:13:40 2013