BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002586
(904 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224099571|ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1133
Score = 1428 bits (3696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 679/908 (74%), Positives = 784/908 (86%), Gaps = 7/908 (0%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKI 60
+ELP L+LP+F ENF YYKE+E FVLE+G +SR+ DLVPIVGP G+ LPY ILF++
Sbjct: 227 LELPNHLQLPNFNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRV 286
Query: 61 NLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR 120
NLLVQNGC+AG +LD FYRLVDP R PV CIE+AL+KLYHLKECCYEPS+W +QY+
Sbjct: 287 NLLVQNGCLAGSMLDDIFYRLVDPNRMPVR--CIEYALEKLYHLKECCYEPSKWFNEQYK 344
Query: 121 KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRI 180
KY+TS + P SP +SLD GLVYV++VQ+TP +V+FCGPE+NVSNRVLR +R DIDNFLR+
Sbjct: 345 KYLTSGNPPRSPVLSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRV 404
Query: 181 SFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLR 240
SF+DE+L+KIHSTD+SPR SS ++ RT IY RILSTL+NGI+IGD+KFEFLAFSSSQLR
Sbjct: 405 SFVDEELEKIHSTDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLR 464
Query: 241 ESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIP 300
E+S WMFASR GLTAA+IR WMG+F +IRNVA+YAARLGQSF SS ETLSV EIEIIP
Sbjct: 465 ENSCWMFASRLGLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIP 524
Query: 301 DVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS 360
D+++ G T+Y+FSDGIGK+SAEFARKVA KCG K PSAFQIRY GYKGVVA DPTSS
Sbjct: 525 DIEVSRGGTRYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSS 584
Query: 361 KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQ 420
KKLSLR SM KYESE TKLDVLA SKYQPCFLNRQLI+LLSTLG+ D FE+KQREAV Q
Sbjct: 585 KKLSLRRSMFKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQ 644
Query: 421 LDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRT 480
LDA+LTDPL+AQEALELMSPGENTNILKE+L+CGY+PDAEPFLSMMLQTFRASKLLELRT
Sbjct: 645 LDAMLTDPLRAQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRT 704
Query: 481 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL 540
KTRIFIPNGRSMMGCLDETRTL +GQVFV+ SG+ +R L+ S +FS Q ++++G
Sbjct: 705 KTRIFIPNGRSMMGCLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGS 764
Query: 541 VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCW 600
VVVAKNPCLHPGD+R+LKAV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCW
Sbjct: 765 VVVAKNPCLHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCW 824
Query: 601 DDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREP 660
D ELIP QQ PMDYTP +QLDHDV IE+VEEYFTNYIVNDSLG+IANAHT AD+E
Sbjct: 825 DPELIPSQQISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKES 884
Query: 661 RKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKL 720
KA SEPC++LA KFSIAVDFPKTGVPAEIP +L +EYPDFMEKPDKP+YES+NVIGKL
Sbjct: 885 LKAMSEPCVELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKL 944
Query: 721 FRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYY 780
FR VKDIAP TS IR FT +VAR+ YDPDMEVDGFED+IDDA Y+K NYDYKLGNLM+YY
Sbjct: 945 FREVKDIAPRTSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYY 1004
Query: 781 GIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEK-SGSDTE-DDAYA 838
GIKTEAE+L+GS MKMSKSFTK+RDAEAIGMAVR+L+KEAR+WF EK SG D++ DD A
Sbjct: 1005 GIKTEAELLSGSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDA 1064
Query: 839 KASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTS---IGNAFPALEQ 895
KASAWYHVTYH +YWGCYN+GMNRDHFLSFPWCVYD+L++IK+ ++ P++E+
Sbjct: 1065 KASAWYHVTYHHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVER 1124
Query: 896 QFRQGLRM 903
QF +GL +
Sbjct: 1125 QFSRGLHL 1132
>gi|225424397|ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 1395 bits (3610), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 673/909 (74%), Positives = 778/909 (85%), Gaps = 13/909 (1%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKI 60
+ELPY +LP+F+ENFAYYKE++ +F+LE+GS+YS +L LVPI+GPP G +LP++ILFKI
Sbjct: 219 LELPYGSQLPNFRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKI 278
Query: 61 NLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR 120
N LVQNGC++GP LD++F+RLVDP R P+S IEHAL+KLYHLKECCYEP RWL++QYR
Sbjct: 279 NTLVQNGCLSGPTLDTSFFRLVDPERFPISF--IEHALEKLYHLKECCYEPVRWLSEQYR 336
Query: 121 KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRI 180
Y+ + SPAISLD GLVYV RVQ+TP +VYFCGPE+NVSNRVLR++ DIDNFLR+
Sbjct: 337 TYV-KKPVAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRV 395
Query: 181 SFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLR 240
SF+DE+L+KIHST +SPR S + RT +Y RILS L+NGI+IGD+KF+FLAFSSSQLR
Sbjct: 396 SFLDENLEKIHSTVISPRMSK--EGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLR 453
Query: 241 ESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIP 300
++SAWMFASR GLTAAEIR WMG+F +IRNVAKYAARLGQSFSSSKETL V DEIE IP
Sbjct: 454 DNSAWMFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIP 513
Query: 301 DVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS 360
D++I G+T YVFSDGIGK+S + A +VA KCG K + PSAFQIRYGGYKGVVA DPTSS
Sbjct: 514 DIEIHKGRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSS 573
Query: 361 KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQ 420
+KLSLR SM KYES+ T LDVLAWSKYQP FLNRQLI+LLSTLG+ D +FEKKQR AV Q
Sbjct: 574 RKLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQ 633
Query: 421 LDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRT 480
LD IL DP+ AQEALELMSPGENTN+LKE+L+CGYKPDAEPFLSMMLQTFRA+KLLELRT
Sbjct: 634 LDTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRT 693
Query: 481 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQG 539
KTRIF+PNGRSMMGCLDETRTL YG+VFVQISG G RQ G+S +F S S FI++G
Sbjct: 694 KTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEG 753
Query: 540 LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVC 599
+VVAKNPCLHPGDVRVL AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVC
Sbjct: 754 KIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVC 813
Query: 600 WDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADRE 659
WD +LIPPQQ PMDYTPA + LDHDV IE+VEEYFTNYIVNDSLGIIANAHTVFAD+E
Sbjct: 814 WDRDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKE 873
Query: 660 PRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGK 719
KA +PC +LA+ FSIAVDFPKTGVPAEIP +L VKEYPDFMEK DKPTYESQ+VIGK
Sbjct: 874 YDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGK 933
Query: 720 LFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDY 779
LFR VKDIAPH IR FT++VAR+SYDPDMEV GFED++ DA Y+K YDYKLGNLMDY
Sbjct: 934 LFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDY 993
Query: 780 YGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTE---DDA 836
YGIKTE+EIL+GSIM+MSKSF +R+DAEAIG+AV++LRKEAR WF K GS+T+ DD
Sbjct: 994 YGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFN-KMGSETDSEADDV 1052
Query: 837 YAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNA--FPALE 894
YAKASAWYHVTYHPDYWGCYN+GM+RDHFLSFPWCVYD+L+ K+ K S G + +LE
Sbjct: 1053 YAKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMS-GRSLHLSSLE 1111
Query: 895 QQFRQGLRM 903
++ QGLR+
Sbjct: 1112 RRLSQGLRL 1120
>gi|146762448|gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 1385 bits (3584), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 668/908 (73%), Positives = 763/908 (84%), Gaps = 27/908 (2%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKI 60
+ELP+ L+LP+F+ENFAYYKE+E R VLE+GS+YS +L LVPIV P I LP+EILFK+
Sbjct: 226 LELPHNLQLPNFRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKV 285
Query: 61 NLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR 120
NLLVQNGC+ GP LD FYRLVDP R + I+HAL+KLY+L+ECCYEPSRWL ++Y+
Sbjct: 286 NLLVQNGCIPGPALDDTFYRLVDPCR--MHKVYIDHALEKLYYLRECCYEPSRWLFEEYK 343
Query: 121 KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRI 180
+ SR SP ISLD+GLVYV RVQ+TPSRVYFCGPEINVSNRVLR F DIDNFLRI
Sbjct: 344 NFSRSRKYQGSPTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRI 403
Query: 181 SFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLR 240
SF+DE+L+KIHST++ RG RT IY RILSTLRNGI+IG+++FEFLAFSSSQLR
Sbjct: 404 SFVDEELEKIHSTNVQARGR------RTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLR 457
Query: 241 ESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIP 300
E+SAWMFASR GLTAA+IR WMGNF +IRNVAKYAARLGQSFSSS ETLSV DEI +IP
Sbjct: 458 ENSAWMFASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIP 517
Query: 301 DVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS 360
D++I KYVFSDGIGK+SAEFA+KVA+KC LK PSAFQIR GG+KGVVA DPTSS
Sbjct: 518 DIEIMKDGIKYVFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSS 577
Query: 361 KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQ 420
KLSLR SM KYESE TKLDVLAWSKYQPCFLNRQLI+LLSTLG+ D FEKKQRE V Q
Sbjct: 578 WKLSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQ 637
Query: 421 LDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRT 480
L+A+LTDPL+AQEALELMSPGENTNILKE+L+CGYKPDAEPFLSMML+TFRASKLLELRT
Sbjct: 638 LNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRT 697
Query: 481 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL 540
K RIF+ GRSMMGCLDETRTLNYGQVFVQ SG SRS +RFIVQG
Sbjct: 698 KARIFVQKGRSMMGCLDETRTLNYGQVFVQFSG---------------SRSERRFIVQGK 742
Query: 541 VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCW 600
V+VAKNPCLHPGDVRVL+AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCW
Sbjct: 743 VIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCW 802
Query: 601 DDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREP 660
D ELIP +Q PMDY+PA + +LDH+V IE++EEYFTNYIVNDSLGII+NAHT FADREP
Sbjct: 803 DPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREP 862
Query: 661 RKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKL 720
KA S PCL+LA+ FSIAVDFPKTGVPAEIP L VKEYPDFMEKPDKP+Y+S NVIGKL
Sbjct: 863 DKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKL 922
Query: 721 FRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYY 780
FR VK++AP+ I+ T+E +R YDPDMEV+GFED+IDDA +HK YDYKLGNLMDYY
Sbjct: 923 FREVKNLAPNECSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYY 982
Query: 781 GIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTE--DDAYA 838
G+KTEAEIL G IMKMS+SFTK+RDAEAI MAVR+LRKEAR+WF EK E DDAYA
Sbjct: 983 GVKTEAEILGGGIMKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYA 1042
Query: 839 KASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNA--FPALEQQ 896
KASAWY+VTYHP YWG YN+GMNRDHFLSFPWCVYD+L++IKK+K ++ A +LE +
Sbjct: 1043 KASAWYYVTYHPSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHR 1102
Query: 897 FRQGLRMY 904
F++GL ++
Sbjct: 1103 FQRGLHLH 1110
>gi|90823307|gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 1370 bits (3546), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 662/908 (72%), Positives = 761/908 (83%), Gaps = 27/908 (2%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKI 60
+ELP+ L+LP+F+ENFAYYKE+E R VLE+GS+YS +L LVPIV P I LP+EILFK+
Sbjct: 226 LELPHNLQLPNFRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKV 285
Query: 61 NLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR 120
NLLVQNGC+ GP LD FYRLVDP R + I+HAL+KLY+L+ECCYEPSRWL ++Y+
Sbjct: 286 NLLVQNGCIPGPALDDTFYRLVDPCR--MHKVYIDHALEKLYYLRECCYEPSRWLFEEYK 343
Query: 121 KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRI 180
+ SR SP ISLD+GLVYV RVQ+TPSRVYFCGPEINVSNRVLR F DIDNFLRI
Sbjct: 344 NFSRSRKYQGSPTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRI 403
Query: 181 SFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLR 240
SF+DE+L+KIHST++ RG RT IY RILSTLRNGI+IG+++FEFLAFSSSQLR
Sbjct: 404 SFVDEELEKIHSTNVQARGR------RTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLR 457
Query: 241 ESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIP 300
E+SAWMFASR GLTAA+IR WMGNF +IRNVAKYAARLGQSFSSS ETLSV DEI +IP
Sbjct: 458 ENSAWMFASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIP 517
Query: 301 DVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS 360
D++I KYVF DGIGK+SAEFA+KVA+KC LK PSAFQIR GG+KGVVA DPTSS
Sbjct: 518 DIEIMKDGIKYVFPDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSS 577
Query: 361 KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQ 420
KLSLR SM KYESE TKLDVLAWSKYQPCFLNRQLI+LLSTLG+ D FEKKQRE V Q
Sbjct: 578 WKLSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQ 637
Query: 421 LDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRT 480
L+A+LTDPL+AQEALELMSPGENTNILKE+L+CGYKPDAEPFLSMML+TFRASKLLELRT
Sbjct: 638 LNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRT 697
Query: 481 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL 540
K RIF+ GRSMMGCLDETRTLNYGQVFVQ SG SRS +RFIVQG
Sbjct: 698 KARIFVQKGRSMMGCLDETRTLNYGQVFVQFSG---------------SRSERRFIVQGK 742
Query: 541 VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCW 600
V+VAKNPCLHPGDVRVL+AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCW
Sbjct: 743 VIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCW 802
Query: 601 DDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREP 660
D ELIP +Q PMDY+PA + +LDH+V IE++EEYFTNYIVNDSLGII+NAHT FADREP
Sbjct: 803 DPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREP 862
Query: 661 RKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKL 720
KA S PCL+LA+ FSIAVDFPKTGVPAEIP L VKE+PDFMEKPDKP+Y+S NVIGKL
Sbjct: 863 GKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKL 922
Query: 721 FRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYY 780
FR VK++AP+ I+L T+E +R YDPDMEV+GF D+IDDA ++K YDYKLGNLMDYY
Sbjct: 923 FREVKNLAPNECSIKLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYY 982
Query: 781 GIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTE--DDAYA 838
G+KTEAEIL+G IMKMS+SFTK+RDAE+I MAVR+LRKEAR+WF EK E DDAYA
Sbjct: 983 GVKTEAEILSGGIMKMSRSFTKKRDAESISMAVRSLRKEARSWFNEKGSELDEEIDDAYA 1042
Query: 839 KASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNA--FPALEQQ 896
KASAWY+VTYH YWG YN+GMNRDHFLSFPWCVYD+L++IKK+K ++ A +LE +
Sbjct: 1043 KASAWYYVTYHHSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHR 1102
Query: 897 FRQGLRMY 904
F++G ++
Sbjct: 1103 FQRGFHLH 1110
>gi|225424395|ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 1343 bits (3476), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 650/890 (73%), Positives = 757/890 (85%), Gaps = 10/890 (1%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKI 60
+ELP+ +LP+F ENFA YKE++ +F+LE+G+++S +L LVPIVGPP G LP++ILFKI
Sbjct: 217 LELPHGSQLPNFCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKI 276
Query: 61 NLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR 120
N LVQNGC++GP LD+NF+R VDP R ++IS IEHAL+KLY+L+ECCYEP RWL +QYR
Sbjct: 277 NTLVQNGCLSGPTLDTNFFRWVDPQR--INISFIEHALEKLYYLEECCYEPVRWLHEQYR 334
Query: 121 KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRI 180
Y+ S+ SPAISLD GLVYV RVQ+TP +VYFCGPE+NVSNRVLR++ DIDNFLR+
Sbjct: 335 TYI-SKQVAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRV 393
Query: 181 SFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLR 240
SF+DE+ +KIHST +SPR S+ + RT +Y RILS L+NGI+IGD+KF+FLA SSSQLR
Sbjct: 394 SFLDENSEKIHSTVISPRMSN--EGRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLR 451
Query: 241 ESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIP 300
++SAWMFASR GLTAA+IR MG+F +IRNVAKYAARLGQSFSSSKETL V EIEIIP
Sbjct: 452 DNSAWMFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIP 511
Query: 301 DVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS 360
D++ T YVFSDGIGK+SAE A +VA KCG K++ PSAFQIRYGGYKGVVA DPTSS
Sbjct: 512 DIETHRDGTTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSS 571
Query: 361 KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQ 420
+KLSLR SM KYESE T LDVL+WSKY+PCFLNRQLI+LLSTLG+ D +FEKKQREAV Q
Sbjct: 572 RKLSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQ 631
Query: 421 LDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRT 480
LD IL DPL+AQEALELMSPGENTNILKE+L+CGYKPDAEPFLSMMLQTFRA+KLLELRT
Sbjct: 632 LDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRT 691
Query: 481 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQG 539
KTRIF+PNGRSMMGCLDETRTL YG+VFVQISG G RQ G+S +F S S FI++G
Sbjct: 692 KTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEG 751
Query: 540 LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVC 599
VVVAKNPCLHPGDVR+L AV+VPALHHMVDCVVFPQKGMRPHP+ECSGSDLDGDIYFVC
Sbjct: 752 KVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVC 811
Query: 600 WDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADRE 659
WD +LIPP+Q PMDYTPA + LDHDV IE+VEEYFTNYI ND LGIIANAHTVFAD+E
Sbjct: 812 WDHDLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKE 871
Query: 660 PRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGK 719
KA PC +LA+ FSIA++FPKTGVPAEIP HL+VKEYPDFMEK +KPTYESQ+VIGK
Sbjct: 872 YDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGK 931
Query: 720 LFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDY 779
LFR VKD+APH +R FT++VA +SYD DMEVDGFED++ DA Y+K YD+KLG+LMD
Sbjct: 932 LFREVKDVAPHNYDVRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDC 991
Query: 780 YGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDT---EDDA 836
GI+TE+EIL+GSIMKMSKSF KR+DAEAI +AVR+LRKEAR WF K GS T DD
Sbjct: 992 CGIRTESEILSGSIMKMSKSFDKRKDAEAIALAVRSLRKEARTWFN-KMGSGTYAGADDV 1050
Query: 837 YAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTSI 886
YA ASAWYHVTYHP YWGCYN+GM DHFLSFPWCVYD+L++IK+DK SI
Sbjct: 1051 YAIASAWYHVTYHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDKMSI 1100
>gi|4138282|emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 1306 bits (3381), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 632/887 (71%), Positives = 735/887 (82%), Gaps = 10/887 (1%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGS--AYSRSLDLVPIVGPPDGIALPYEILF 58
+E ++LP+F E+F YYKES ++F+L+TG ++S+ L LVPIV P+GI LPY+ILF
Sbjct: 215 LEFRNGVQLPNFSESFFYYKESMNQFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILF 274
Query: 59 KINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQ 118
KI+ L+Q+GC G L+ NF++LVDP R +I+CIEHAL+KLY+LKECCY+P RWLT+Q
Sbjct: 275 KISSLIQHGCFPGLALNFNFFQLVDPRRR--NIACIEHALEKLYYLKECCYDPVRWLTEQ 332
Query: 119 YRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFL 178
Y +Y+ R P SP I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DI+NFL
Sbjct: 333 YDEYLKGRQLPKSPPITLDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFL 392
Query: 179 RISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQ 238
R+SF+DE+ +KIHSTDL PR S+ TRT IY RILSTLRNG +IGD++FEFLAFSSSQ
Sbjct: 393 RVSFVDEEWEKIHSTDLLPRASTGNG-TRTDIYERILSTLRNGFIIGDKRFEFLAFSSSQ 451
Query: 239 LRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI 298
LR++S WMFASR GLTA +IR WMG+FR+IRNVAKYAARLGQSF SS+ETLSV E+E+
Sbjct: 452 LRDNSVWMFASRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEV 511
Query: 299 IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT 358
IPDV + T Y+FSDGIGK+SA+FA +V KCGL+ P S+FQIRYGGYKGVVA DP
Sbjct: 512 IPDVACSLHGTNYIFSDGIGKISADFAHRVTIKCGLQYTP-SSFQIRYGGYKGVVAVDPY 570
Query: 359 SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAV 418
SS KLSLR SM KYES KLDVL WSKYQPC+LNRQL++LLSTLG+ D++ E+KQ EAV
Sbjct: 571 SSMKLSLRKSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAV 630
Query: 419 RQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLEL 478
QLDAIL D LKAQEALELMSPGENTNILKE+L CGY PDAEPFLSMMLQTFRASKLL+L
Sbjct: 631 DQLDAILHDSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDL 690
Query: 479 RTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIV 537
RT+TRIFIPNGR+MMGCLDE+RTL YGQVFVQ SGAG RQ ES F+ S S FI+
Sbjct: 691 RTRTRIFIPNGRTMMGCLDESRTLEYGQVFVQFSGAGRRQFFEESHPFNDSGSANCDFIL 750
Query: 538 QGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYF 597
+G VVVAKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYF
Sbjct: 751 KGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYF 810
Query: 598 VCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFAD 657
VCWD +LIPP+Q MDYTPA + QLDHDV IE+VEEYFTNYI+NDSLGIIANAH VFAD
Sbjct: 811 VCWDPDLIPPRQVQSMDYTPAPTTQLDHDVTIEEVEEYFTNYIINDSLGIIANAHVVFAD 870
Query: 658 REPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVI 717
REP A S+PC QLA+ FSIAVDFPKTGVPAEIP L KEYPDFMEKPDKPTY S+ VI
Sbjct: 871 REPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVI 930
Query: 718 GKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLM 777
GKLF+ VK+ P S I FT++VAR+SYD DM VDGFED+ID+A Y+K YD KLGNLM
Sbjct: 931 GKLFQKVKNKTPQASSIATFTRDVARKSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLM 990
Query: 778 DYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAY 837
DYYGIKTEAEIL+G IMK SK+F +R+DAEAIG+AVR LRKEARAWFK +S DD
Sbjct: 991 DYYGIKTEAEILSGGIMKASKTFDRRKDAEAIGVAVRCLRKEARAWFKRRSDI---DDML 1047
Query: 838 AKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKT 884
AKASAWYHVTYH YWG YN+G+ RDHF+SFPWCVYD+L++IKK K
Sbjct: 1048 AKASAWYHVTYHHTYWGLYNEGLKRDHFISFPWCVYDQLIQIKKAKA 1094
>gi|157152684|gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
Length = 1117
Score = 1305 bits (3377), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 630/888 (70%), Positives = 735/888 (82%), Gaps = 11/888 (1%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYS---RSLDLVPIVGPPDGIALPYEIL 57
+E + LP+F E+F YYKES ++ +L+TG +S + L LVPIV P+GI LPY+IL
Sbjct: 215 LEFHNGVRLPNFSESFFYYKESANQVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKIL 274
Query: 58 FKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTD 117
FKI+ L+Q+GC G L+ NF++LVDP R +I+CIEHAL+KLY+LKECCY+P RWLT+
Sbjct: 275 FKISSLIQHGCFPGLALNFNFFQLVDPRRR--NIACIEHALEKLYYLKECCYDPVRWLTE 332
Query: 118 QYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNF 177
QY +Y+ R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNF
Sbjct: 333 QYDEYLKRRQLPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNF 392
Query: 178 LRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSS 237
LR+SF+DE+ +KIHSTDL PR S+ + RT IY RILSTLRNG +IGD+KFEFLAFSSS
Sbjct: 393 LRVSFVDEEWEKIHSTDLLPRASTGNGV-RTDIYLRILSTLRNGFVIGDKKFEFLAFSSS 451
Query: 238 QLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIE 297
QLR++S WMFASR GLTA +IR WMG F++IRNVAKYAARLGQSF SS+ETLSV E+E
Sbjct: 452 QLRDNSVWMFASRPGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVE 511
Query: 298 IIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP 357
+IPDV + T Y+FSDGIGK+SA+FAR+VA KCGL+ P S FQIRYGGYKGVVA DP
Sbjct: 512 VIPDVVCSLHGTNYIFSDGIGKISADFARRVAVKCGLQYTP-SCFQIRYGGYKGVVAVDP 570
Query: 358 TSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREA 417
SS KLSLR+SM KYES KLDVL WSKYQPC+LNRQL++LLSTLG+ D++FE+KQ EA
Sbjct: 571 YSSMKLSLRNSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEA 630
Query: 418 VRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLE 477
V QLDAIL D LKAQEALELMSPGENTNILKE+L CGY PDAEPFLSMMLQTFRASKLL+
Sbjct: 631 VDQLDAILHDTLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLD 690
Query: 478 LRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFI 536
LRT++RIFIPNGR+MMGCLDE+RTL YGQVFVQ +G G RQ + ES F+ S S FI
Sbjct: 691 LRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGTGRRQFYEESHPFNDSGSTNCDFI 750
Query: 537 VQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIY 596
++G VVVAKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIY
Sbjct: 751 LEGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIY 810
Query: 597 FVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFA 656
FVCWD +L+PP+Q PMDYTPA S QLDHDV IE+VEEYFTNYIVNDSLGIIANAH VFA
Sbjct: 811 FVCWDPDLVPPRQFQPMDYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFA 870
Query: 657 DREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNV 716
DREP A S+PC QLA+ FSIAVDFPKTGVPAEIP L KEYPDFMEKPDKPTY S+ V
Sbjct: 871 DREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKV 930
Query: 717 IGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNL 776
IGKLF+ VKD P S I FT +VAR+SYD DM V+GFED+ID+A Y+K YD KLGNL
Sbjct: 931 IGKLFQKVKDKTPQASSIANFTMDVARKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNL 990
Query: 777 MDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDA 836
MDYYGIKTEAEIL+G IMK SK+F +R+DA+AIG+AVR+LRKEAR WFK +S DD
Sbjct: 991 MDYYGIKTEAEILSGGIMKASKTFDRRKDADAIGVAVRSLRKEARTWFKRRSDI---DDM 1047
Query: 837 YAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKT 884
AKASAWYHVTYH YWG YN+G+ RDHF+SFPWC+YD+L++IKK K
Sbjct: 1048 LAKASAWYHVTYHHTYWGFYNEGLKRDHFISFPWCIYDQLIQIKKAKA 1095
>gi|350537951|ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase [Solanum lycopersicum]
Length = 1114
Score = 1297 bits (3357), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 625/881 (70%), Positives = 733/881 (83%), Gaps = 12/881 (1%)
Query: 7 LELPDFKENFAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLLV 64
+ LP+F+E+F +Y E E+ L+TG + S+ LVP V PP+GI++PY+ILFKI+ LV
Sbjct: 221 VRLPNFEESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILFKISSLV 280
Query: 65 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 124
Q+GC+ GP L+ F+RLVDP R +++CIEHAL+KLY++KECCY+P RWLT+QY Y+
Sbjct: 281 QHGCIPGPALNVYFFRLVDPRRR--NVACIEHALEKLYYIKECCYDPVRWLTEQYDGYLK 338
Query: 125 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 184
R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+D
Sbjct: 339 GRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVD 398
Query: 185 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 244
E+ +K++STDL P+ S+ + + RT IY RILSTLR G +IGD+KFEFLAFSSSQLR++S
Sbjct: 399 EEWEKLYSTDLLPKASTGSGV-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSV 457
Query: 245 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 304
WMFASR GLTA +IR WMG+F +I+NVAKYAARLGQSF SS+ETLSV EIE+IPDVK+
Sbjct: 458 WMFASRPGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV 517
Query: 305 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLS 364
T YVFSDGIGK+S +FA +VASKCGL+ P SAFQIRYGGYKGVV DP SS KLS
Sbjct: 518 H--GTSYVFSDGIGKISGDFAHRVASKCGLQYTP-SAFQIRYGGYKGVVGVDPDSSMKLS 574
Query: 365 LRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 424
LR SM KYES+ KLDVL WSKYQPC+LNRQLI+LLSTLG+ DE+ E+KQ+EAV QLDAI
Sbjct: 575 LRKSMSKYESDNIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDAI 634
Query: 425 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 484
L D LKAQEALELMSPGENTNILK +L CGYKPDAEPFLSMMLQTFRASKLL+LRT++RI
Sbjct: 635 LHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSRI 694
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRS-RQRFIVQGLVVV 543
FIPNGR+MMGCLDE+RTL YGQVFVQ +GAG+ + + F++SRS FI++G VVV
Sbjct: 695 FIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDLHPFNNSRSTNSNFILKGNVVV 754
Query: 544 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
AKNPCLHPGD+RVLKAVNV ALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD +
Sbjct: 755 AKNPCLHPGDIRVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQD 814
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
+IPP+Q PM+Y PA S+QLDHDV IE+VEEYFTNYIVNDSLGIIANAH VFADREP A
Sbjct: 815 MIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMA 874
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRA 723
S+PC +LAE FSIAVDFPKTGVPAEIP L KEYPDFM+KPDK +Y S+ VIGKLFR
Sbjct: 875 MSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPDKTSYISERVIGKLFRK 934
Query: 724 VKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIK 783
VKD AP S I FT++VARRSYD DMEVDGFED+ID+A +K YD KLGNLMDYYGIK
Sbjct: 935 VKDKAPQASSIATFTRDVARRSYDADMEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIK 994
Query: 784 TEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAW 843
TEAEIL+G IMK SK+F +R+DAEAI +AVRALRKEARAWFK + + DD KASAW
Sbjct: 995 TEAEILSGGIMKASKTFDRRKDAEAISVAVRALRKEARAWFKRR---NDIDDMLPKASAW 1051
Query: 844 YHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKT 884
YHVTYHP YWGCYNQG+ R HF+SFPWCVYD+L++IKKDK
Sbjct: 1052 YHVTYHPTYWGCYNQGLKRAHFISFPWCVYDQLIQIKKDKA 1092
>gi|356499585|ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
Length = 1125
Score = 1297 bits (3357), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 642/908 (70%), Positives = 738/908 (81%), Gaps = 18/908 (1%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKI 60
+ELP +LP+F+ENFAYY+ESE ++ L+TG +S++ LVPIV PP G+ + Y+ILFK+
Sbjct: 230 LELPNGRQLPNFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKV 289
Query: 61 NLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR 120
N LVQ+ C+AGP LD +FYRLVDP R P IE+AL+K+Y+ KE CYEP++WLTDQY+
Sbjct: 290 NSLVQHACLAGPALDGDFYRLVDPRRMPREF--IEYALEKIYYSKEFCYEPTKWLTDQYK 347
Query: 121 KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRI 180
Y+ S++ P SPAISLD GLVYV RVQ+TP +VYFCGPE+NVSNRVLRHFR IDNFLR+
Sbjct: 348 TYLESKNHPRSPAISLDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRV 407
Query: 181 SFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLR 240
SF+DE+LDK+ STDLS R + +T IYTRILS L+NGI++GD+KFEFLAFSSSQLR
Sbjct: 408 SFVDEELDKLFSTDLSSRSQNK----KTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLR 463
Query: 241 ESSAWMFA-SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEII 299
E+S WMFA + G TAA IR+WMGNF +IRNVAKYAARLGQSF SS ETLSVH DE+EII
Sbjct: 464 ENSLWMFAPTETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEII 523
Query: 300 PDVK-IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT 358
PDVK + +YVFSDGIGK+S EFA+KVA KCG D PSAFQIRYGGYKGVVA DP
Sbjct: 524 PDVKKLTYDGNEYVFSDGIGKISLEFAQKVAKKCGY-DCTPSAFQIRYGGYKGVVAVDPK 582
Query: 359 SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAV 418
S KLSLR SMRKY+S+ TKLDVLA SK+QPC+LNRQLISLLSTLGI D++FEKKQRE V
Sbjct: 583 SCYKLSLRKSMRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETV 642
Query: 419 RQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLEL 478
QL+ ILTD LKAQE L+LMS GE TN+LKE+LICGYKP+ EPFLSMMLQTFRASKLLEL
Sbjct: 643 NQLNTILTDSLKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLEL 702
Query: 479 RTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ 538
R K+RIFIP GR+MMGCLDETRTL YGQVFVQ S +L S F S + ++V+
Sbjct: 703 RLKSRIFIPKGRAMMGCLDETRTLEYGQVFVQFSN---NRLQNLSDDFFSYDLPKNYMVK 759
Query: 539 GLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 598
G VVVAKNPCLHPGDVRVL+AV+VP L+HMVDCVVFPQKG RPHPNECSGSDLDGDIYFV
Sbjct: 760 GKVVVAKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFV 819
Query: 599 CWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADR 658
CWD ELIP + PMDYT +++LDHDV IE+VEEYF NYIVNDSLGIIANAHTVFAD+
Sbjct: 820 CWDHELIPSRPIDPMDYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADK 879
Query: 659 EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIG 718
E KA S+ C++LA FS AVDFPKTGVPA IPP L+VKEYPDFMEKPDKPTY+S NVIG
Sbjct: 880 EHLKAMSDQCVKLARLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIG 939
Query: 719 KLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMD 778
KLFR VK+I+ I FTK VAR SYD +MEVDGF D++DDA YHK NYDYKLGNLMD
Sbjct: 940 KLFREVKEISTSAGSITSFTKLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMD 999
Query: 779 YYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEK---SGSDTEDD 835
YYGIKTEAEIL G+IMKMSKSF KRRDAEAI MAVR+LRKEARAWF E D
Sbjct: 1000 YYGIKTEAEILGGNIMKMSKSFNKRRDAEAINMAVRSLRKEARAWFNENSSGDVDSGSSD 1059
Query: 836 AYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNAFPALEQ 895
YAKASAWYHVTYHP YWGCYN+GMNRDH+LSF WCVY LV+IKK+K SI + +LE
Sbjct: 1060 VYAKASAWYHVTYHPSYWGCYNEGMNRDHYLSFSWCVYPLLVQIKKEKLSIRRS--SLEY 1117
Query: 896 QFRQGLRM 903
F GLR+
Sbjct: 1118 SF-SGLRL 1124
>gi|142942402|gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1115
Score = 1290 bits (3339), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 622/882 (70%), Positives = 734/882 (83%), Gaps = 13/882 (1%)
Query: 7 LELPDFKENFAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLLV 64
+ LP+F+E+F +Y E E+ L+TG + S+ LVP V PP+GIA+PY+ILFKI+ LV
Sbjct: 221 VHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLV 280
Query: 65 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 124
Q+GC+ GP L+ F+RLVDP R +++CIE AL+KLY+LKECCY+P RWLT+QY Y+
Sbjct: 281 QHGCIPGPALNVYFFRLVDPQRR--NVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLK 338
Query: 125 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 184
R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+D
Sbjct: 339 GRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVD 398
Query: 185 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 244
E+ +K++ST+L P+ S+ I RT IY RILSTLR G +IGD+KFEFLAFSSSQLR++S
Sbjct: 399 EEWEKLYSTELLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSV 457
Query: 245 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 304
WMFASR GLT +IR WMG+F +I+NVAKYAARLGQSF SS+ETLSV EIE+IPDVK+
Sbjct: 458 WMFASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV 517
Query: 305 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLS 364
T YVFSDGIGK+SA+FAR+VASKCGL+ P SAFQIRYGGYKGVVA DP SS KLS
Sbjct: 518 H--GTSYVFSDGIGKISADFARRVASKCGLQYTP-SAFQIRYGGYKGVVAVDPYSSMKLS 574
Query: 365 LRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 424
LR SM KYES+ KLDVL WSKYQPC+LNRQL++LLSTLG+ D++ E+KQ+EAV QLDAI
Sbjct: 575 LRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAI 634
Query: 425 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 484
L D LKAQEALELMSPGENTNILK +L CGY PDAEPFLSMMLQTFRASKLL+LRT++RI
Sbjct: 635 LHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRI 694
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVVV 543
FIPNGR+MMGCLDE+RTL YGQVFVQ +GAG+R+ + F++SRS FI++G VVV
Sbjct: 695 FIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVV 754
Query: 544 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
AKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD +
Sbjct: 755 AKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQD 814
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
+IPP+Q M+Y PA S+QLDH+V IE+VEEYFTNYIVNDSLGIIANAH VFADREP A
Sbjct: 815 MIPPRQVQAMEYPPAPSIQLDHNVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMA 874
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEK-PDKPTYESQNVIGKLFR 722
S+PC +LAE FSIAVDFPKTGVPAEIP L KEYPDFM+K PDK TY S+ VIGKLFR
Sbjct: 875 MSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFR 934
Query: 723 AVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGI 782
VKD AP S I +FT++VARRSYD D+EVDGFED+ID+A +K YD KLGNLMDYYGI
Sbjct: 935 KVKDKAPQASSIAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGI 994
Query: 783 KTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASA 842
KTEAEIL+G IMK SK+F +R+DAEAI +AVRALRKEAR WFK + + DD KASA
Sbjct: 995 KTEAEILSGGIMKASKTFDRRKDAEAISVAVRALRKEARTWFKRR---NDIDDMLPKASA 1051
Query: 843 WYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKT 884
WYHVTYHP YWGCYNQG+ RDHF+SFPWCVYD+L++IKK+K
Sbjct: 1052 WYHVTYHPTYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKA 1093
>gi|113205271|gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 1288 bits (3332), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 622/882 (70%), Positives = 734/882 (83%), Gaps = 13/882 (1%)
Query: 7 LELPDFKENFAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLLV 64
+ LP+F+E+F +Y E E+ L+TG + S+ LVP V PP+GIA+PY+ILFKI+ LV
Sbjct: 69 VHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLV 128
Query: 65 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 124
Q+GC+ GP L+ F+RLVDP R +++CIE AL+KLY+LKECCY+P RWLT+QY Y+
Sbjct: 129 QHGCIPGPALNVYFFRLVDPQRR--NVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLK 186
Query: 125 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 184
R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+D
Sbjct: 187 GRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVD 246
Query: 185 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 244
E+ +K++ST+L P+ S+ I RT IY RILSTLR G +IGD+KFEFLAFSSSQLR++S
Sbjct: 247 EEWEKLYSTELLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSV 305
Query: 245 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 304
WMFASR GLT +IR WMG+F +I+NVAKYAARLGQSF SS+ETLSV EIE+IPDVK+
Sbjct: 306 WMFASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV 365
Query: 305 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLS 364
T YVFSDGIGK+SA+FAR+VASKCGL+ P SAFQIRYGGYKGVVA DP SS KLS
Sbjct: 366 H--GTSYVFSDGIGKISADFARRVASKCGLQYTP-SAFQIRYGGYKGVVAVDPYSSMKLS 422
Query: 365 LRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 424
LR SM KYES+ KLDVL WSKYQPC+LNRQL++LLSTLG+ D++ E+KQ+EAV QLDAI
Sbjct: 423 LRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAI 482
Query: 425 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 484
L D LKAQEALELMSPGENTNILK +L CGY PDAEPFLSMMLQTFRASKLL+LRT++RI
Sbjct: 483 LHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRI 542
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVVV 543
FIPNGR+MMGCLDE+RTL YGQVFVQ +GAG+R+ + F++SRS FI++G VVV
Sbjct: 543 FIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVV 602
Query: 544 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
AKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD +
Sbjct: 603 AKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQD 662
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
+IPP+Q M+Y PA S+QLDH+V IE+VEEYFTNYIVNDSLGIIANAH VFADREP A
Sbjct: 663 MIPPRQVQAMEYPPAPSIQLDHNVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMA 722
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEK-PDKPTYESQNVIGKLFR 722
S+PC +LAE FSIAVDFPKTGVPAEIP L KEYPDFM+K PDK TY S+ VIGKLFR
Sbjct: 723 MSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFR 782
Query: 723 AVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGI 782
VKD AP S I +FT++VARRSYD D+EVDGFED+ID+A +K YD KLGNLMDYYGI
Sbjct: 783 KVKDKAPQASSIAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGI 842
Query: 783 KTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASA 842
KTEAEIL+G IMK SK+F +R+DAEAI +AVRALRKEAR WFK ++ DD KASA
Sbjct: 843 KTEAEILSGGIMKASKTFDRRKDAEAISVAVRALRKEARTWFKRRNDI---DDMLPKASA 899
Query: 843 WYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKT 884
WYHVTYHP YWGCYNQG+ RDHF+SFPWCVYD+L++IKK+K
Sbjct: 900 WYHVTYHPTYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKA 941
>gi|113205254|gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 1285 bits (3325), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 624/882 (70%), Positives = 731/882 (82%), Gaps = 13/882 (1%)
Query: 7 LELPDFKENFAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLLV 64
+ LP+F+E F +Y E E+ L+TG + S+ LVP V PP+GIA+PY+ILFKI+ LV
Sbjct: 69 VHLPNFQEKFFHYAERENNITLQTGFTFFISQKSSLVPNVQPPEGIAIPYKILFKISSLV 128
Query: 65 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 124
Q+GC+ GP L+ F+RLVDP R +++CIE AL+KLY+LKECCY+P RWLT+QY Y+
Sbjct: 129 QHGCIPGPALNVYFFRLVDPQRR--NVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLK 186
Query: 125 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 184
R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+D
Sbjct: 187 GRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVD 246
Query: 185 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 244
E+ +K++ST+L P+ S+ I RT IY RILSTLR G +IGD+K EFLAFSSSQLR++S
Sbjct: 247 EEWEKLYSTELLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKIEFLAFSSSQLRDNSV 305
Query: 245 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 304
WMFASR GLTA +IR WMG+F +I+NVAKYAARLGQSF SSKETLSV EIE+IPDVK+
Sbjct: 306 WMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKV 365
Query: 305 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLS 364
T YVFSDGIGK+SA+FAR+VASKCGL+ P SAFQIRYGGYKGVVA DP SS KLS
Sbjct: 366 H--GTSYVFSDGIGKISADFARRVASKCGLQYTP-SAFQIRYGGYKGVVAVDPYSSMKLS 422
Query: 365 LRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 424
LR SM KYES+ KLDVL WSKYQPC+LNRQLI+LLSTLG+ D++ E+KQ+EAV QLDAI
Sbjct: 423 LRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLITLLSTLGVKDDVLEQKQKEAVDQLDAI 482
Query: 425 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 484
L D LKAQEALELMSPGENTNILK +L CGY PDAEPFLSMMLQTFRASKLL+LRTK+RI
Sbjct: 483 LHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRI 542
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVVV 543
FIPNGR+MMGCLDE+RTL YGQVFVQ +GAG+R+ + F++SRS FI++G VVV
Sbjct: 543 FIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVV 602
Query: 544 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
AKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD +
Sbjct: 603 AKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQD 662
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
+IPP+Q PM+Y PA S+QLDHDV IE+VEEYFTNYIVNDSLGII+NAH VFADREP A
Sbjct: 663 MIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIISNAHVVFADREPDMA 722
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEK-PDKPTYESQNVIGKLFR 722
S+PC +LAE SIAVDFPKTGVPAEIP L KEYPDFM+K PDK TY S+ VIGKLFR
Sbjct: 723 MSDPCKKLAELCSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFR 782
Query: 723 AVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGI 782
VKD AP S +FT++VARRSYD D+EVDGFED+ID+A +K YD KLGNLMDYYGI
Sbjct: 783 KVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDSKLGNLMDYYGI 842
Query: 783 KTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASA 842
KTEAEIL+G IMK SK+F +R+DAEAI +AVRALRKEAR WFK + DD KASA
Sbjct: 843 KTEAEILSGGIMKTSKTFDRRKDAEAISIAVRALRKEARTWFKRHNDI---DDMLPKASA 899
Query: 843 WYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKT 884
WYHVTYHP YWGCYNQG+ RDHF+SFPWCVYD+L++IKK+K
Sbjct: 900 WYHVTYHPTYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKA 941
>gi|113205257|gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1139
Score = 1284 bits (3322), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/914 (68%), Positives = 735/914 (80%), Gaps = 45/914 (4%)
Query: 7 LELPDFKENFAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLLV 64
+ LP+F+E+F +Y E E+ L+TG + S+ LVP V PP+GIA+PY+ILFKI+ LV
Sbjct: 213 VHLPNFQESFFHYTERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLV 272
Query: 65 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 124
Q+GC+ GP LD F+RLVDP R +++CIE AL+KLY+LKECCY+P RWLT+QY Y+
Sbjct: 273 QHGCIPGPALDVYFFRLVDPQRR--NVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLK 330
Query: 125 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 184
R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+D
Sbjct: 331 GRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVD 390
Query: 185 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 244
E+ +K++STDL P+ S+ I RT IY RILSTLR G +IGD+KFEFLAFSSSQLR++S
Sbjct: 391 EEWEKLYSTDLLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSV 449
Query: 245 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 304
WMFASR GLTA +IR WMG+F +I+NVAKYAARLGQSF SSKETLSV EIE+IPDVK+
Sbjct: 450 WMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKV 509
Query: 305 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLS 364
T YVFSDGIGK+SA+FAR+VASKCGL+ P SAFQIRYGGYKGVVA DP SS KLS
Sbjct: 510 H--GTSYVFSDGIGKISADFARRVASKCGLQYTP-SAFQIRYGGYKGVVAVDPYSSMKLS 566
Query: 365 LRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 424
LR SM KYES+ KLDVL WSKYQPC+LNRQL++LLSTLG+ D++ E+KQ+EAV QLDAI
Sbjct: 567 LRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAI 626
Query: 425 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 484
L D LKAQEALELMSPGENT ILK +L CGY PDAEPFLSMMLQTFRASKLL+LRT++RI
Sbjct: 627 LHDSLKAQEALELMSPGENTTILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRI 686
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVVV 543
FIPNGR+MMGCLDE+RTL YGQVFVQ +GAG+R+ + F++SRS FI++G VVV
Sbjct: 687 FIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVV 746
Query: 544 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGM------------------------ 579
AKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG
Sbjct: 747 AKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRLGMYFNCLPTSEVEVKSAYTLPS 806
Query: 580 ---------RPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIE 630
RPHPNECSGSDLDGDIYFVCWD ++IPP+Q PM+Y PA S+QLDHDV IE
Sbjct: 807 SDPTLCFDDRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIE 866
Query: 631 DVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEI 690
+VEEYFTNYIVNDSLGIIANAH VFADREP A S+PC +LAE FSIAVDFPKTGVPAEI
Sbjct: 867 EVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEI 926
Query: 691 PPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDM 750
P L KEYPDFM+KPDK TY S+ VIGKLFR VKD AP S I +FT++VARRSYD D+
Sbjct: 927 PSQLRPKEYPDFMDKPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDVDL 986
Query: 751 EVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIG 810
EVDGFED+ID+A +K YD KLGNLMDYYGIKTEAEIL+G IMK SK+F +R+DAEAI
Sbjct: 987 EVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRRKDAEAIS 1046
Query: 811 MAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPW 870
+AVRALRKEAR WFK ++ DD KASAWYHVTYHP YWGCYNQG+ RDHF+SFPW
Sbjct: 1047 IAVRALRKEARTWFKRRNDI---DDMLPKASAWYHVTYHPTYWGCYNQGLKRDHFISFPW 1103
Query: 871 CVYDRLVEIKKDKT 884
CVYD+L++IKK+K
Sbjct: 1104 CVYDQLIQIKKEKA 1117
>gi|449457379|ref|XP_004146426.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|449491619|ref|XP_004158954.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase 1a [Cucumis sativus]
Length = 1130
Score = 1283 bits (3321), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 622/884 (70%), Positives = 735/884 (83%), Gaps = 8/884 (0%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRF-VLETGSAYSRSLDLVPIVGPPDGIALPYEILFK 59
++LP +LP FK+NFAYY+E E F +++ + +S DL PIV + LPY+ILFK
Sbjct: 227 LKLPNGRQLPPFKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHV-LPYKILFK 285
Query: 60 INLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQY 119
IN LVQ GC+ PLLD++FYRLV+ I +EHAL+KL+HLKEC Y+PS +LT+QY
Sbjct: 286 INALVQYGCIPWPLLDASFYRLVERI-ITTRIEFVEHALEKLFHLKECNYDPSNFLTEQY 344
Query: 120 RKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLR 179
RKY SR P+SP ISLDDGLVYV RVQ+TP +V+FCGPE+NVSNRVLRHF + IDNFLR
Sbjct: 345 RKY--SRHPPNSPVISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLR 402
Query: 180 ISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL 239
+SF+DE+ DK+ STDL PR SS ++ +T IY RILS L+NGI+IGD+ F+FLAFSSSQL
Sbjct: 403 VSFVDEEWDKMRSTDLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQL 462
Query: 240 RESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEII 299
R++S WMFAS + AA IR WMG+FR I+N AKYAARLGQSF SS E LSV +E EII
Sbjct: 463 RDNSLWMFASGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREII 522
Query: 300 PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS 359
PD++++ G+ KYVFSDGIGK+S++FA++VA+KCG + PSAFQIRYGGYKGVVA DP S
Sbjct: 523 PDIEVQQGEIKYVFSDGIGKISSKFAKEVAAKCGFQ-AVPSAFQIRYGGYKGVVAVDPYS 581
Query: 360 SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 419
+ KLSLR SM K+ES+ TKLDVL SKYQPCFLNRQLI+L+STLG+ DEIFEKKQ EAV
Sbjct: 582 TIKLSLRKSMCKFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVE 641
Query: 420 QLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 479
QLDAILTDPLKAQEALELMSPGENTNILKE+L CGY+PD EP+LSMMLQTFRASKLLELR
Sbjct: 642 QLDAILTDPLKAQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELR 701
Query: 480 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 539
TK+RIFIPNGR+MMGCLDETRTL YGQVFVQIS +R L ES F+ +++G
Sbjct: 702 TKSRIFIPNGRAMMGCLDETRTLEYGQVFVQISSGRHRNL-SESFAFNRIGREHHLVIEG 760
Query: 540 LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVC 599
V VAKNPCLHPGDVRVLKAVN+P L+HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVC
Sbjct: 761 NVTVAKNPCLHPGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVC 820
Query: 600 WDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADRE 659
WD ELIP +Q PPMDYTPA +LD DV ED++EYF NY+VNDSLGIIANAHT FAD+E
Sbjct: 821 WDTELIPSRQIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKE 880
Query: 660 PRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGK 719
KARS PCL+LA+ FS+AVDFPKTGVPA IP HLYVKE+PDFMEKPD+P+YES VIGK
Sbjct: 881 LFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGK 940
Query: 720 LFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDY 779
LFRAVKDIAP S IR FT++VARR YD DMEV+GFED+++DA YHK NYDYKLGNL+DY
Sbjct: 941 LFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDY 1000
Query: 780 YGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTE-DDAYA 838
YGIK+EAE+L+GSIM+MSKSFT+RRDAEAI +AVR+LRKEAR WF + G+D+ DD +A
Sbjct: 1001 YGIKSEAEVLSGSIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFA 1060
Query: 839 KASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKD 882
KASAWY+VTYH YWGCYN+GM RDH+LSFPWCVYD+L++IK++
Sbjct: 1061 KASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQIKEN 1104
>gi|297849898|ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1107
Score = 1280 bits (3313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 620/883 (70%), Positives = 724/883 (81%), Gaps = 25/883 (2%)
Query: 1 MELPYRLELPDFKENFAYYKESE-DRFVLETGSAYSRSLD-LVPIVGPPDGIALPYEILF 58
+ELP L +PDF+ENFA Y E +++E+GS+YS + + LVP+V PP G LP+EILF
Sbjct: 226 LELPVHLNVPDFRENFANYAEHRASTYLIESGSSYSSNANKLVPVVDPPPGFDLPFEILF 285
Query: 59 KINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQ 118
K+N LVQN C+ GP LD + Y+L++P + + + I+H L+KL++L E CYEP+RWL Q
Sbjct: 286 KLNTLVQNACLPGPALDLDVYQLLNPKK--IDRALIDHCLEKLFYLGESCYEPARWLRKQ 343
Query: 119 YRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFL 178
Y++ + P SP ISLDDGLVY++RVQVTP+RVYF GPE+NVSNRVLRH+ + I+NFL
Sbjct: 344 YKELSSKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFL 403
Query: 179 RISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQ 238
R+SF+DEDL+K+ S DLSPR S+ RT++Y RI S LR+GI+IGD+KFEFLAFSSSQ
Sbjct: 404 RVSFVDEDLEKVRSMDLSPRSSTQR---RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQ 460
Query: 239 LRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI 298
LRE+SAWMFA GLT+A IR WMG+F IRNVAKYAARLGQSFSSS+ETL+V DEIE+
Sbjct: 461 LRENSAWMFAPIEGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV 520
Query: 299 IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT 358
IPDV+I T+YVFSDGIGK+SAEFAR+VA KCGL + PSAFQIRYGGYKGVVA DP
Sbjct: 521 IPDVEIISLGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPN 580
Query: 359 SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAV 418
SSKKLSLR SM K+ESE TKLDVLAWSKYQPC++NRQLI+LLSTLG+ D +FEKKQRE V
Sbjct: 581 SSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVEDSVFEKKQREVV 640
Query: 419 RQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLEL 478
+LDAILTDPL+A EAL LM+PGENTNILK L++CGYKPDAEPFLSMMLQ FRASKLLEL
Sbjct: 641 DRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLEL 700
Query: 479 RTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ 538
RTKTRIFI GRSMMGCLDETRTL YGQV VQ S R +RFI+
Sbjct: 701 RTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYS--------------DPMRPGRRFIIT 746
Query: 539 GLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 598
G VVVAKNPCLHPGDVRVL+AVNVPAL+HMVDCVVFPQKG+RPHPNECSGSDLDGDIYFV
Sbjct: 747 GPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFV 806
Query: 599 CWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADR 658
CWD ELIPP+ PMDYTP + LDHDV IE+VEEYF NYIVNDSLGIIANAHT FAD+
Sbjct: 807 CWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADK 866
Query: 659 EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIG 718
EP KA S+PC++LA KFS+AVDFPKTGV AEIP HLYVKEYPDFMEKPDKPTYES+NVIG
Sbjct: 867 EPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLYVKEYPDFMEKPDKPTYESKNVIG 926
Query: 719 KLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMD 778
KLFR VK+ AP I+ FT +VA +SYD DMEVDGFE+++D+A ++K NYD+KLGNLMD
Sbjct: 927 KLFREVKERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLGNLMD 986
Query: 779 YYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYA 838
YYGIKTEAEIL+G IM+MSKSFTKRRDAE+IG AVRALRKE + F + E++ A
Sbjct: 987 YYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLF----NATEEENESA 1042
Query: 839 KASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKK 881
KASAWYH+TYH YWG YN+G+NRDHFLSF WCVYD+LV IKK
Sbjct: 1043 KASAWYHITYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKK 1085
>gi|297805194|ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1097
Score = 1280 bits (3311), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 622/883 (70%), Positives = 724/883 (81%), Gaps = 25/883 (2%)
Query: 1 MELPYRLELPDFKENFAYYKESEDR-FVLETGSAYSRSLD-LVPIVGPPDGIALPYEILF 58
+ELP L +PDF+ENFA Y E F++E+GS+YS + + LVP+V PP G LP+EILF
Sbjct: 216 LELPVHLNVPDFRENFANYAEHRASPFLIESGSSYSSNANKLVPVVDPPPGFDLPFEILF 275
Query: 59 KINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQ 118
K+N LVQN C+ GP LD + Y+L++P + + + I+H L+KL++L E CYEP+RWL Q
Sbjct: 276 KLNTLVQNACLPGPALDLDVYQLLNPKK--IDRALIDHCLEKLFYLGESCYEPARWLRKQ 333
Query: 119 YRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFL 178
Y++ + P SP ISLDDGLVY++RVQVTP+RVYF GPE+NVSNRVLRH+ + I+NFL
Sbjct: 334 YKELSSKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFL 393
Query: 179 RISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQ 238
R+SF+DEDL+K+ S DLSPR S+ RT++Y RI S LR+GI+IGD+KFEFLAFSSSQ
Sbjct: 394 RVSFVDEDLEKVRSMDLSPRSSTQR---RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQ 450
Query: 239 LRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI 298
LRE+SAWMFA GLT+A IR WMG+F IRNVAKYAARLGQSFSSS+ETL+V DEIE+
Sbjct: 451 LRENSAWMFAPIDGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV 510
Query: 299 IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT 358
IPDV+I T+YVFSDGIGK+SAEFAR+VA KCGL + PSAFQIRYGGYKGVVA DP
Sbjct: 511 IPDVEIISLGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPN 570
Query: 359 SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAV 418
SSKKLSLR SM K+ESE TKLDVLAWSKYQPC++NRQLI+LLSTLGI D +FEKKQRE V
Sbjct: 571 SSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGIKDSVFEKKQREVV 630
Query: 419 RQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLEL 478
+LDAILTDPL+A EAL LM+PGENTNILK L++CGYKPDAEPFLSMMLQ FRASKLLEL
Sbjct: 631 DRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLEL 690
Query: 479 RTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ 538
RTKTRIFI GRSMMGCLDETRTL YGQV VQ S R +RFI+
Sbjct: 691 RTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYS--------------DPMRPGRRFIIT 736
Query: 539 GLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 598
G VVVAKNPCLHPGDVRVL+AVNVPAL+HMVDCVVFPQKG+RPHPNECSGSDLDGDIYFV
Sbjct: 737 GPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFV 796
Query: 599 CWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADR 658
CWD ELIPP+ PMDYTP + LDHDV IE+VEEYF NYIVNDSLGIIANAHT FAD+
Sbjct: 797 CWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADK 856
Query: 659 EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIG 718
EP KA S+PC++LA KFS+AVDFPKTGV AEIP HL+VKEYPDFMEKPDKPTYES+NVIG
Sbjct: 857 EPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDKPTYESKNVIG 916
Query: 719 KLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMD 778
KLFR VK+ AP I+ FT +VA +SYD DMEVDGFE+++D+A ++K NYD+KLGNLMD
Sbjct: 917 KLFREVKERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLGNLMD 976
Query: 779 YYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYA 838
YYGIKTEAEIL+G IM+MSKSFTKRRDAE+IG AVRALRKE + F + E++ A
Sbjct: 977 YYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLF----NATEEENESA 1032
Query: 839 KASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKK 881
KASAWYHVTYH YWG YN+G+NRDHFLSF WCVYD+LV IKK
Sbjct: 1033 KASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKK 1075
>gi|15223906|ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName: Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1; AltName:
Full=RNA-directed RNA polymerase 1
gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19 [Arabidopsis thaliana]
gi|110737376|dbj|BAF00633.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|332191105|gb|AEE29226.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 1279 bits (3310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 624/889 (70%), Positives = 726/889 (81%), Gaps = 26/889 (2%)
Query: 1 MELPYRLELPDFKENFAYYKESE-DRFVLETGSAYSRSLD-LVPIVGPPDGIALPYEILF 58
+ELP L +PDF+ENFA Y E F++E+GS+YS + + LVP+V PP G +LP+EILF
Sbjct: 225 LELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILF 284
Query: 59 KINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQ 118
K+N LVQN C++GP LD +FYRL++ + ++ I+H L+KL+HL ECCYEP+ WL D+
Sbjct: 285 KLNTLVQNACLSGPALDLDFYRLLNQKKYDRAL--IDHCLEKLFHLGECCYEPAHWLRDE 342
Query: 119 YRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFL 178
Y+K+++ P SP ISLDDGLVY++RVQVTP+RVYF GPE+NVSNRVLRH+ + I+NFL
Sbjct: 343 YKKWISKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFL 402
Query: 179 RISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQ 238
R+SF+DEDL+K+ S DLSPR S+ RT++Y RI S LR+GI+IGD+KFEFLAFSSSQ
Sbjct: 403 RVSFVDEDLEKVRSMDLSPRSSTQR---RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQ 459
Query: 239 LRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI 298
LRE+SAWMFA +TAA IR WMG+F IRNVAKYAARLGQSFSSS+ETL+V DEIE+
Sbjct: 460 LRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV 519
Query: 299 IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT 358
IPDV+I T+YVFSDGIGK+SAEFARKVA KCGL + PSAFQIRYGGYKGVVA DP
Sbjct: 520 IPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPN 579
Query: 359 SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAV 418
SSKKLSLR SM K+ESE TKLDVLAWSKYQPC++NRQLI+LLSTLG+ D +FEKKQRE V
Sbjct: 580 SSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVV 639
Query: 419 RQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLEL 478
+LDAILT PL+A EAL LM+PGENTNILK L++CGYKPDAEPFLSMMLQ FRASKLLEL
Sbjct: 640 DRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLEL 699
Query: 479 RTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ 538
RTKTRIFI GRSMMGCLDETRTL YGQV VQ S R +RFI+
Sbjct: 700 RTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYS--------------DPMRPGRRFIIT 745
Query: 539 GLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 598
G VVVAKNPCLHPGDVRVL+AVNVPAL+HMVDCVVFPQKG+RPHPNECSGSDLDGDIYFV
Sbjct: 746 GPVVVAKNPCLHPGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFV 805
Query: 599 CWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADR 658
CWD EL+PP+ PMDYTP + LDHDV IE+VEEYF NYIVNDSLGIIANAHT FAD+
Sbjct: 806 CWDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADK 865
Query: 659 EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIG 718
EP KA S+PC++LA+KFS AVDFPKTGV A IP HLYVKEYPDFMEKPDKPTYES+NVIG
Sbjct: 866 EPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIG 925
Query: 719 KLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMD 778
KLFR VK+ AP I+ FT +VA +SYD DMEVDGFE+++D+A Y K NYD+KLGNLMD
Sbjct: 926 KLFREVKERAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMD 985
Query: 779 YYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYA 838
YYGIKTEAEIL+G IM+MSKSFTKRRDAE+IG AVRALRKE + F + A
Sbjct: 986 YYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEEN---ESA 1042
Query: 839 KASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTSIG 887
KASAWYHVTYH YWG YN+G+NRDHFLSF WCVYD+LV IK KT++G
Sbjct: 1043 KASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIK--KTNLG 1089
>gi|24935275|gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 1277 bits (3304), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 623/889 (70%), Positives = 725/889 (81%), Gaps = 26/889 (2%)
Query: 1 MELPYRLELPDFKENFAYYKESE-DRFVLETGSAYSRSLD-LVPIVGPPDGIALPYEILF 58
+ELP L +PDF+ENFA Y E F++E+GS+YS + + LVP+V PP G +LP+EILF
Sbjct: 225 LELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILF 284
Query: 59 KINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQ 118
K+N LVQN C++GP LD +FYRL++ + ++ I+H L+KL+HL ECCYEP+ WL D+
Sbjct: 285 KLNTLVQNACLSGPALDLDFYRLLNQKKYDRAL--IDHCLEKLFHLGECCYEPAHWLRDE 342
Query: 119 YRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFL 178
Y+K+++ P SP ISLDDGLVY++RVQVTP+RVYF GPE+NVSNRVLRH+ + I+NFL
Sbjct: 343 YKKWISKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFL 402
Query: 179 RISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQ 238
R+SF+DEDL+K+ S DLSPR S+ RT++Y RI S LR+GI+IGD+KFEFLAFSSSQ
Sbjct: 403 RVSFVDEDLEKVRSMDLSPRSSTQR---RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQ 459
Query: 239 LRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI 298
LRE+SAWMFA +TAA IR WMG+F IRNVAKYAARLGQSFSSS+ETL+V DEIE+
Sbjct: 460 LRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV 519
Query: 299 IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT 358
IPDV+I T+YVFSDGIGK+SAEFARKVA KCGL + PSAFQIRYGGYKGVVA DP
Sbjct: 520 IPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPN 579
Query: 359 SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAV 418
SSKKLSLR SM K+ESE TKLDVLAWSKYQPC++NRQLI+LLSTLG+ D +FEKKQRE V
Sbjct: 580 SSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVV 639
Query: 419 RQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLEL 478
+LDAILT PL+A EAL LM+PGENTNILK L++CGYKPDAEPFLSMMLQ FRASKLLEL
Sbjct: 640 DRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLEL 699
Query: 479 RTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ 538
RTKTRIFI GRSMMGCLDETRTL YGQV VQ S R +RFI+
Sbjct: 700 RTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYS--------------DPMRPGRRFIIT 745
Query: 539 GLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 598
G VVVAKNPCLH GDVRVL+AVNVPAL+HMVDCVVFPQKG+RPHPNECSGSDLDGDIYFV
Sbjct: 746 GPVVVAKNPCLHSGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFV 805
Query: 599 CWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADR 658
CWD EL+PP+ PMDYTP + LDHDV IE+VEEYF NYIVNDSLGIIANAHT FAD+
Sbjct: 806 CWDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADK 865
Query: 659 EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIG 718
EP KA S+PC++LA+KFS AVDFPKTGV A IP HLYVKEYPDFMEKPDKPTYES+NVIG
Sbjct: 866 EPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIG 925
Query: 719 KLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMD 778
KLFR VK+ AP I+ FT +VA +SYD DMEVDGFE+++D+A Y K NYD+KLGNLMD
Sbjct: 926 KLFREVKERAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMD 985
Query: 779 YYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYA 838
YYGIKTEAEIL+G IM+MSKSFTKRRDAE+IG AVRALRKE + F + A
Sbjct: 986 YYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEEN---ESA 1042
Query: 839 KASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTSIG 887
KASAWYHVTYH YWG YN+G+NRDHFLSF WCVYD+LV IK KT++G
Sbjct: 1043 KASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIK--KTNLG 1089
>gi|383100937|emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
Length = 1107
Score = 1276 bits (3302), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 620/883 (70%), Positives = 723/883 (81%), Gaps = 25/883 (2%)
Query: 1 MELPYRLELPDFKENFAYYKESEDR-FVLETGSAYSRSLD-LVPIVGPPDGIALPYEILF 58
+ELP L +PDF+ENFA Y E F++E+GS+YS + + LVP+V PP G LP+EILF
Sbjct: 226 LELPVHLNVPDFRENFANYAEHRASPFLIESGSSYSSNANKLVPVVDPPPGFDLPFEILF 285
Query: 59 KINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQ 118
K+N LVQN C+ GP LD + Y+L++P + + + I+H L+KL+HL E CYEP+RWL Q
Sbjct: 286 KLNTLVQNACLPGPALDLDVYQLLNPKK--YNRALIDHCLEKLFHLGESCYEPARWLRKQ 343
Query: 119 YRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFL 178
Y++ + P SP ISLDDGLVY++RVQVTP+RVYF GPE+NVSNRVLRH+ + I+NFL
Sbjct: 344 YKELSSKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFL 403
Query: 179 RISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQ 238
R+SF+DEDL+K+ S DLSPR S+ RT++Y RI S LR+GI+IGD+KFEFLAFSSSQ
Sbjct: 404 RVSFVDEDLEKVRSMDLSPRSSTQR---RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQ 460
Query: 239 LRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI 298
LRE+SAWMFA GLT+A IR WMG+F IRNVAKYAARLGQSFSSS+ETL+V DEIE+
Sbjct: 461 LRENSAWMFAPIDGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV 520
Query: 299 IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT 358
IPDV+I T+YVFSDGIGK+SAEFAR+VA KCGL + PSAFQIRYGGYKGVVA DP
Sbjct: 521 IPDVEIISLGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPN 580
Query: 359 SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAV 418
SSKKLSLR SM K+ESE TKLDVLAWSKYQPC++NRQLI+LLSTLG+ D +F+KKQRE V
Sbjct: 581 SSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVKDSVFKKKQREVV 640
Query: 419 RQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLEL 478
+LDAILTDPL+A EAL LM+PGENTNILK L++CGYKPDAEPFLSMMLQ FRASKLLEL
Sbjct: 641 DRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLEL 700
Query: 479 RTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ 538
RTKTRIFI GRSMMGCLDETRTL YGQV VQ S R +RFI+
Sbjct: 701 RTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYS--------------DPMRPGRRFIIT 746
Query: 539 GLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 598
G VVVAKNPCLHPGDVRVL+AVNVPAL+HMVDCVVFPQKG+RPHPNECSGSDLDGDIYFV
Sbjct: 747 GPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFV 806
Query: 599 CWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADR 658
CWD ELIPP+ PMDYTP + LDHDV IE+VEEYF NYIVNDSLGIIANAHT FAD+
Sbjct: 807 CWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADK 866
Query: 659 EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIG 718
EP KA S+PC++LA KFS+AVDFPKTGV AEIP HL+VKEYPDFMEKPDKPTYES+NVIG
Sbjct: 867 EPLKAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDKPTYESKNVIG 926
Query: 719 KLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMD 778
KLFR VK+ AP I+ FT +VA +SYD DMEVDGFE+++D+A ++K NYD+KLGNLMD
Sbjct: 927 KLFREVKERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLGNLMD 986
Query: 779 YYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYA 838
YYGIKTEAEIL+G IM+MSKSFTKRRDAE+IG AVRALRKE + F + E++ A
Sbjct: 987 YYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLF----NATEEENESA 1042
Query: 839 KASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKK 881
KASAWYHVTYH YWG YN+G+NRDHFL F WCVYD+LV IKK
Sbjct: 1043 KASAWYHVTYHSSYWGLYNEGLNRDHFLIFAWCVYDKLVRIKK 1085
>gi|113205326|gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1021
Score = 1259 bits (3257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 626/940 (66%), Positives = 734/940 (78%), Gaps = 71/940 (7%)
Query: 7 LELPDFKENFAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLLV 64
+ LP+F+E+F +Y E E+ L+TG + S+ LVP V PP+GIA+PY+ILFKI+ LV
Sbjct: 69 VHLPNFQESFFHYAERENNITLQTGFTFFISQKSALVPNVQPPEGIAIPYKILFKISSLV 128
Query: 65 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 124
Q+GC+ GP L+ F+RLVDP R +++CIE AL+KLY+LKECCY+P RWLT+QY Y+
Sbjct: 129 QHGCIPGPSLNVYFFRLVDPQRR--NVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLK 186
Query: 125 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 184
R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+D
Sbjct: 187 GRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVD 246
Query: 185 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 244
E+ +K++ST+L P+ S+ I RT IY RILSTLR G +IGD+KFEFLAFSSSQLR++S
Sbjct: 247 EEWEKLYSTELLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSV 305
Query: 245 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 304
WMFASR GLTA +IR WMG+F +I+NVAKYAARLGQSF SSKETLSV EIE+IPDVK+
Sbjct: 306 WMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKV 365
Query: 305 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLS 364
T YVFSDGIGK+SA+FAR+VASKCGL+ P SAFQIRYGGYKGVVA DP SS KL+
Sbjct: 366 H--GTSYVFSDGIGKISADFARRVASKCGLQYTP-SAFQIRYGGYKGVVAVDPYSSMKLT 422
Query: 365 LRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 424
LR SM KYES+ KLDVL WSKYQPCFLNRQLI+LLSTLG+ D+I E+KQ+EAV QLDAI
Sbjct: 423 LRKSMSKYESDNNKLDVLGWSKYQPCFLNRQLITLLSTLGVRDDILEQKQKEAVDQLDAI 482
Query: 425 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 484
L D LKAQEALELMSPGENTNILK +L CGY PDAEPFLSMMLQTFRASKLL+LRTK+RI
Sbjct: 483 LHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRI 542
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVVV 543
FIPNGR+MMGCLDE+RTL YGQVFVQ +GAG+R+ + F++SRS FI++G VVV
Sbjct: 543 FIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVV 602
Query: 544 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR----------------------- 580
AKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG R
Sbjct: 603 AKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRLGMYFNCFPTSEVEVKSAYTLPS 662
Query: 581 ----------PHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIE 630
PHPNECSGSDLDGDIYFVCWD ++IPP+Q PM+Y PA S+QLDHDV IE
Sbjct: 663 SDPTLWYLTGPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIE 722
Query: 631 -------------------------DVEEYFTNYIVNDSLGIIANAHTVFADREPRKARS 665
+VEEYFTNYIVNDSLGII+NAH VFADREP A S
Sbjct: 723 RGDWPVCATTVQVLRNSFSPVCLLQEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMS 782
Query: 666 EPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEK-PDKPTYESQNVIGKLFRAV 724
+PC +LAE SIAVDFPKTGVPAEIP L KEYPDFM+K PDK TY S+ VIGKLFR V
Sbjct: 783 DPCKKLAELCSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKV 842
Query: 725 KDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKT 784
KD AP S +FT++VARRSYD D+EVDGFED+ID+A +K YD KLGNLMDYYGIKT
Sbjct: 843 KDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKT 902
Query: 785 EAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWY 844
EAEIL+G IMK SK+F +R+DAEAI +AVRALRKEAR WFK ++ DD KASAWY
Sbjct: 903 EAEILSGGIMKTSKTFDRRKDAEAISIAVRALRKEARTWFKRRNDI---DDMLPKASAWY 959
Query: 845 HVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKT 884
HVTYHP YWGCYNQG+ RDHF+SFPWCVYD+L++IKK+K
Sbjct: 960 HVTYHPTYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKA 999
>gi|113205194|gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
Length = 1137
Score = 1250 bits (3235), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 609/882 (69%), Positives = 717/882 (81%), Gaps = 27/882 (3%)
Query: 7 LELPDFKENFAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLLV 64
+ LP+F+E+F +Y E E+ L+TG + S+ LVP V PP+GIA+PY+ILFKI+ LV
Sbjct: 257 VHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLV 316
Query: 65 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 124
Q+GC+ GP L+ F+RLVDP R +++CIE AL+KLY+LKECCY+P RWLT+QY Y
Sbjct: 317 QHGCIPGPALNVYFFRLVDPQRR--NVACIEQALEKLYYLKECCYDPVRWLTEQYDGYFK 374
Query: 125 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 184
R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+D
Sbjct: 375 GRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVD 434
Query: 185 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 244
E+ +K++ST+L P+ S+ I RT IY RILSTLR G +IGD+KFEFLAFSSSQLR++S
Sbjct: 435 EEWEKLYSTELLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSV 493
Query: 245 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 304
WMFASR GLTA +IR WMG+F +I+NVAKYAAR GQSF SS+ETLSV EIE+IPDVK+
Sbjct: 494 WMFASRRGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGSSRETLSVLRHEIEVIPDVKV 553
Query: 305 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLS 364
T YVFSDGIGK+SA+FARKVAS CGL+ P SAFQIRYGGYKGVVA DP SS KLS
Sbjct: 554 H--GTSYVFSDGIGKISADFARKVASNCGLQYTP-SAFQIRYGGYKGVVAVDPYSSMKLS 610
Query: 365 LRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 424
LR SM KYES+ KLDVL WSKYQPC+LNRQL++LLSTLG+ D++ E+KQ+EAV QLDAI
Sbjct: 611 LRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAI 670
Query: 425 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 484
L D LKAQEALELMSPGENTNILK +L CGY PDAEPFLSMMLQTFRASKLL+LRTK+RI
Sbjct: 671 LHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRI 730
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVVV 543
FIPNGR+MMGCLDE+RTL YGQVFVQ +GAG+R+ + F++SRS FI++G VVV
Sbjct: 731 FIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVV 790
Query: 544 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
AKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD +
Sbjct: 791 AKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQD 850
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
+IPP+Q M++ P S+QLDHDV IE+VEEYFTNYIVND LGIIANAH VFADREP A
Sbjct: 851 MIPPRQVQAMEFPPPPSIQLDHDVTIEEVEEYFTNYIVNDGLGIIANAHVVFADREPDMA 910
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEK-PDKPTYESQNVIGKLFR 722
+DFPKTGVPAEIP L KEYPDFM+K PDK TY S+ VIGKLFR
Sbjct: 911 --------------MMDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFR 956
Query: 723 AVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGI 782
VKD AP S I +FT++ ARRSYD D+EVDGFED+ID+A +K YD KLGNLMDYYGI
Sbjct: 957 KVKDKAPQASSIAIFTRDDARRSYDTDLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGI 1016
Query: 783 KTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASA 842
KTEAEIL+G IMK SK+F +R+DAEAI +AVRALRKEAR WFK ++ DD KASA
Sbjct: 1017 KTEAEILSGGIMKTSKTFDRRKDAEAISIAVRALRKEARTWFKRRNDI---DDMLPKASA 1073
Query: 843 WYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKT 884
WYHVTYHP YWGCYNQG+ RDHF+SFPWCVYD+L++IKK+K
Sbjct: 1074 WYHVTYHPTYWGCYNQGLKRDHFISFPWCVYDQLIQIKKEKA 1115
>gi|142942515|gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1065
Score = 1236 bits (3197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 603/855 (70%), Positives = 708/855 (82%), Gaps = 13/855 (1%)
Query: 7 LELPDFKENFAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLLV 64
+ LP+F+E+F +Y E E+ L+TG + S+ LVP V PP+GIA+PY+ILFKI+ LV
Sbjct: 220 VHLPNFQESFFHYAERENNITLQTGFTFFISQKSALVPNVQPPEGIAIPYKILFKISSLV 279
Query: 65 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 124
Q+GC+ GP L+ F+RLVDP R +++CIE AL+KLY+LKECCY+P RWLT+QY Y+
Sbjct: 280 QHGCIPGPSLNVYFFRLVDPQRR--NVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLK 337
Query: 125 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 184
R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+D
Sbjct: 338 GRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVD 397
Query: 185 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 244
E+ +K++ST+L P+ S+ I RT IY RILST++ G +IGD+KFEFLAFSSSQLR++S
Sbjct: 398 EEWEKLYSTELLPKASTGNGI-RTNIYERILSTMQKGFVIGDKKFEFLAFSSSQLRDNSV 456
Query: 245 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 304
WMFASR GLTA +IR WMG+F +I+NVAKYAARLGQSF SSKETLSV EIE+IPDVK+
Sbjct: 457 WMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKV 516
Query: 305 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLS 364
T YVFSDGIGK+SA+FAR+VASKCGL+ P SAFQIRYGGYKGVVA DP SS KLS
Sbjct: 517 H--GTSYVFSDGIGKISADFARRVASKCGLQYTP-SAFQIRYGGYKGVVAVDPYSSMKLS 573
Query: 365 LRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 424
LR SM KYES+ KLDVL WSKYQPC+LNRQLI+LLSTLG+ D+I E+KQ+EAV QLDAI
Sbjct: 574 LRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLITLLSTLGVKDDILEQKQKEAVDQLDAI 633
Query: 425 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 484
L D LKAQEALELMSPGENTNILK +L CGY PDAEPFLSMMLQTFRASKLL+LRTK+RI
Sbjct: 634 LHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRI 693
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVVV 543
FIPNGR+MMGCLDE+RTL YGQVFVQ +GAG+R+ + F++SRS FI++G VVV
Sbjct: 694 FIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVV 753
Query: 544 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
AKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD +
Sbjct: 754 AKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQD 813
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
+IPP+Q PM+Y PA S+QLDHDV IE+VEEYFTNYIVNDSLGII+NAH VFADREP A
Sbjct: 814 MIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIISNAHVVFADREPDMA 873
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEK-PDKPTYESQNVIGKLFR 722
S+PC +LAE SIAVDFPKTGVPAEIP KEYPDFM+K PDK TY S+ VIGKL+R
Sbjct: 874 MSDPCKKLAELCSIAVDFPKTGVPAEIPSQWRPKEYPDFMDKPPDKTTYISERVIGKLYR 933
Query: 723 AVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGI 782
VKD AP S +FT++VARRSYD D+EVDGFED+ID+A +K YD KLGNLMDYYGI
Sbjct: 934 KVKDKAPQASSTAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGI 993
Query: 783 KTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASA 842
KTEAEIL+G IMK SK+F +R+DAEAI +AVRALRKEAR WFK + + DD KASA
Sbjct: 994 KTEAEILSGGIMKTSKTFDRRKDAEAISIAVRALRKEARTWFKRR---NDIDDMLPKASA 1050
Query: 843 WYHVTYHPDYWGCYN 857
WYHVTYHP YWGCYN
Sbjct: 1051 WYHVTYHPTYWGCYN 1065
>gi|224099569|ref|XP_002311535.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222851355|gb|EEE88902.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1139
Score = 1233 bits (3191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 589/880 (66%), Positives = 716/880 (81%), Gaps = 7/880 (0%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKI 60
+ELP +LP+F+ENF YKE E RF LE GS + R DLVPI+ GI LPY+I+FK+
Sbjct: 238 LELPRSGQLPNFQENFPCYKEDEGRFFLEVGSTFCRVSDLVPILREAQGIELPYDIVFKV 297
Query: 61 NLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR 120
N LVQ+G + GP LD++FYRL++P R V+I+ I++AL+KL+H ECCY+P RWL ++YR
Sbjct: 298 NSLVQHGYLPGPALDASFYRLINPSR--VNIAHIQNALEKLHHSMECCYDPVRWLREEYR 355
Query: 121 KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRI 180
K +++ P+ PA+++DDGLV+V RVQ+TP++VYF GPE+N+SNRVLR + DIDNFLR+
Sbjct: 356 KCISTGRLPTPPAVAVDDGLVHVRRVQITPTKVYFRGPEVNLSNRVLRKYPDDIDNFLRV 415
Query: 181 SFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLR 240
SF+DEDLDK+ ST++SPR SA + +T+IY RILST RNGI+IG +KFEFL FSSSQLR
Sbjct: 416 SFVDEDLDKLFSTNISPRTFSAIEGRQTKIYQRILSTQRNGIVIGSKKFEFLGFSSSQLR 475
Query: 241 ESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIP 300
ESS WMFASR GL AA+IR WMG+FREI+NVAKYAARLGQSF SS+E+ ++ EIE IP
Sbjct: 476 ESSLWMFASRTGLRAADIRRWMGDFREIKNVAKYAARLGQSFGSSRESFNIDEKEIEKIP 535
Query: 301 DVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS 360
D+++ G YVFSDGIGK+SA A +A K G PSAFQIRYGGYKGVVA DPTS
Sbjct: 536 DIEVRSGGVDYVFSDGIGKISAALAHSIAQKFGFLSFTPSAFQIRYGGYKGVVAVDPTSL 595
Query: 361 KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQ 420
KKLSLR SM KY+S T LD+L WSKYQ C+LNR++I+LLSTLG+ D IF++KQ+EA+ Q
Sbjct: 596 KKLSLRRSMSKYKSTNTSLDILGWSKYQACYLNREVITLLSTLGVRDHIFQRKQKEAIAQ 655
Query: 421 LDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRT 480
L+AILTDP AQEALELM+PGE+TN+LKE+L CGYKP AEPFL+MMLQTF ASKLL+LRT
Sbjct: 656 LNAILTDPSSAQEALELMAPGESTNVLKEMLACGYKPGAEPFLAMMLQTFCASKLLDLRT 715
Query: 481 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL 540
+ RIFIP GR+MMGCLDETRTL YGQ FVQ S A + Q S + R+ Q I++G
Sbjct: 716 RARIFIPKGRAMMGCLDETRTLGYGQAFVQYSSARHGQFRDHSRGGEAVRNTQ--ILKGK 773
Query: 541 VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCW 600
++VAKNPCLHPGDVRVL+AVNVPALHHMVDC+VFPQKG RPH NECSGSDLDGD+YFVCW
Sbjct: 774 LIVAKNPCLHPGDVRVLEAVNVPALHHMVDCIVFPQKGKRPHANECSGSDLDGDVYFVCW 833
Query: 601 DDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREP 660
D +LIPP+ PPMDYT A + LDHDV IE+V+EYFT+Y++NDSLGII NAHTVFADR+P
Sbjct: 834 DPDLIPPRTFPPMDYTAAPTTILDHDVTIEEVQEYFTDYLLNDSLGIICNAHTVFADRDP 893
Query: 661 RKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEK-PDKPTYESQNVIGK 719
ARS+ C++LA SIAVDFPKTGVPA+IP L VKEYPDFMEK DK TYESQ V+GK
Sbjct: 894 LMARSKECIELARLSSIAVDFPKTGVPAKIPRELRVKEYPDFMEKAADKRTYESQRVLGK 953
Query: 720 LFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDY 779
LFR V+DIAP TS +R FTKE+ARRSYDPDMEVDGF+ HID+A ++K YD KLGN+MDY
Sbjct: 954 LFRDVRDIAPDTSPVRSFTKEMARRSYDPDMEVDGFQKHIDEAFHYKSVYDNKLGNMMDY 1013
Query: 780 YGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAK 839
YGIKTEAEI++GSIMK+ KSF K+RD ++I ++R+LRK+ARAWF E S DD YAK
Sbjct: 1014 YGIKTEAEIISGSIMKVGKSFDKKRDFDSINYSIRSLRKQARAWFDESDNS--PDDLYAK 1071
Query: 840 ASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEI 879
ASAWY+VTYHP YWG YN+GMNR HFLSFPWC YD+L++I
Sbjct: 1072 ASAWYYVTYHPSYWGRYNEGMNRVHFLSFPWCFYDKLIDI 1111
>gi|224111420|ref|XP_002315849.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222864889|gb|EEF02020.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1102
Score = 1229 bits (3179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/884 (65%), Positives = 709/884 (80%), Gaps = 6/884 (0%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKI 60
+ELP +LP+F+ENF YKE E F+LE GS + DLVPI+ LPY+I+FK+
Sbjct: 222 LELPPNSQLPNFQENFVCYKEDEGHFILEKGSTFCCKSDLVPILSAAQVSELPYDIVFKV 281
Query: 61 NLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR 120
N LVQ+GC+ GP LD+ F+RL++P + ++ + I+HAL+KL HLKECCY+P+RWL +QY+
Sbjct: 282 NSLVQHGCLPGPALDARFFRLINPSKIRIAHAYIQHALEKLSHLKECCYDPARWLREQYQ 341
Query: 121 KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRI 180
KY+T+ P+ PAI++DDGLV++ RVQ+TP+++YFCGP++N+SNRVLR + DIDNFLR+
Sbjct: 342 KYLTTGRLPTPPAIAVDDGLVFLRRVQITPTKLYFCGPDVNLSNRVLRKYPGDIDNFLRV 401
Query: 181 SFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLR 240
SF+DEDLDK+ S ++SPR SA + +T IY RILS RNGI IG +KFEFL FS SQ+R
Sbjct: 402 SFVDEDLDKLFSANISPRTFSAIEGRQTNIYQRILSVQRNGITIGSKKFEFLGFSQSQVR 461
Query: 241 ESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIP 300
ESS WMFASR GLTAA+IREWMG+FREI+NVAKYAARLGQSFSSS+E+ ++ EIEIIP
Sbjct: 462 ESSLWMFASRPGLTAADIREWMGDFREIKNVAKYAARLGQSFSSSRESFNIDRHEIEIIP 521
Query: 301 DVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS 360
D++++ G YVFSDGIGK+SAE A +A K L+ PSAFQIRYGGYKGVVA DPTSS
Sbjct: 522 DIEVKSGGVNYVFSDGIGKISAELADSIARKLRLRSFTPSAFQIRYGGYKGVVAVDPTSS 581
Query: 361 KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQ 420
KLSLR SM KY+S T LD+L WSKY+ CFLNR++I LLSTLG+ D++FE+KQ+EA+ Q
Sbjct: 582 MKLSLRRSMSKYKSTNTSLDILDWSKYRACFLNREVIILLSTLGVKDQVFERKQKEAIAQ 641
Query: 421 LDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRT 480
LDAILTDP+KAQEALELM+ GEN +L +L CGYKP AEPFL+MML+TFRA KLL+LRT
Sbjct: 642 LDAILTDPIKAQEALELMAGGENARVLNGMLACGYKPGAEPFLAMMLETFRALKLLDLRT 701
Query: 481 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQR-FIVQG 539
K+RIF+PNGR+M GCLDETRTL YGQ FVQ S A + H F ++ Q IV+G
Sbjct: 702 KSRIFVPNGRAMTGCLDETRTLEYGQAFVQYSRARLSKSHDH---FKGGKTDQHTLIVRG 758
Query: 540 LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVC 599
+VVAKNPCLHPGDV++LKAV+VPALHHMVDC+VFPQKG RPH NECSGSDLDGD+YFVC
Sbjct: 759 KIVVAKNPCLHPGDVQILKAVDVPALHHMVDCIVFPQKGKRPHTNECSGSDLDGDVYFVC 818
Query: 600 WDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADRE 659
WD +LIPPQ+ PPMDYT Q+ LDHDV IE+V+EYF +Y++NDSLGII AH VFAD E
Sbjct: 819 WDTDLIPPQKFPPMDYTAPQTTILDHDVTIEEVQEYFADYLLNDSLGIICTAHVVFADSE 878
Query: 660 PRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKP--DKPTYESQNVI 717
P ARSE C++LA+ SIAVDFPKTGVPA+IP L VKEYPDFMEK TY SQ V+
Sbjct: 879 PDMARSEKCIELAQLSSIAVDFPKTGVPAKIPKELRVKEYPDFMEKAAYKHTTYVSQRVL 938
Query: 718 GKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLM 777
GKLFRAV+DIAP TS +R FTKE A+RSYDPDMEVDGF+D+I++A Y+K YD KLGN+M
Sbjct: 939 GKLFRAVRDIAPDTSPVRPFTKEAAKRSYDPDMEVDGFKDYINEAFYYKSEYDNKLGNMM 998
Query: 778 DYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAY 837
DYYGIKTEAEI+ G IM+M +SF K++D E I +V +LRK+ARAWF E ++ DD Y
Sbjct: 999 DYYGIKTEAEIIGGCIMRMGRSFDKKKDLEGINFSVSSLRKQARAWFNESGSKESPDDVY 1058
Query: 838 AKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKK 881
KASAWYHVTYHP +WG YN+GM+R HFLSFPWCV+D+L EIKK
Sbjct: 1059 RKASAWYHVTYHPRFWGLYNEGMDRVHFLSFPWCVHDKLFEIKK 1102
>gi|449457381|ref|XP_004146427.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|449491623|ref|XP_004158955.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989901|gb|ADU77016.1| RNA-dependent RNA polymerase 1b [Cucumis sativus]
Length = 1115
Score = 1224 bits (3166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/892 (65%), Positives = 718/892 (80%), Gaps = 14/892 (1%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKI 60
+E+PY +LP+F + FAY+KE + +F L +GS YS +++LVP+V PP I LPY ILFKI
Sbjct: 226 LEIPYGRQLPNFHDKFAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKI 285
Query: 61 NLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR 120
NLLVQ GC+ GP LD +FY++VD + + I+HAL KL HLKECCY PS+WL ++YR
Sbjct: 286 NLLVQQGCLPGPALDISFYQMVD--SQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYR 343
Query: 121 KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRI 180
KY ++ P P ++L++GLVYVHRVQVTP +VYFCGPE+N+SNRVLR + IDNFLR+
Sbjct: 344 KYFKLKNPPQPPILTLNEGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRV 403
Query: 181 SFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLR 240
SF+DE+L K++ST+LSPR SS+ + +T+I+ RILS LR+GI IGD+KFEFLA+SSSQLR
Sbjct: 404 SFVDEELGKMYSTELSPRASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLR 463
Query: 241 ESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIP 300
E++AWMFA + LTAA+IR+WMG+F IRNVAKYAARLGQSF SS ETLSV E+++IP
Sbjct: 464 ENAAWMFAPKNELTAAKIRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIP 523
Query: 301 DVKIEIGK-TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS 359
D+++E G YVFSDGIGK++A FARKVA KCG++ + PSAFQIRY G+KGV++ DPTS
Sbjct: 524 DIEVESGSGVNYVFSDGIGKIAASFARKVAKKCGIR-HTPSAFQIRYAGFKGVISVDPTS 582
Query: 360 SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 419
S KLSLR+SM KYES TKLDVL+WSKY PCFLNRQLI+LLSTLG+ D +FE KQ+E +
Sbjct: 583 SVKLSLRNSMLKYESTDTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELID 642
Query: 420 QLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 479
+LD I +DPLKAQ+ALELMSPGENT ILKE+++CGYKPD+EPFL MML TFR SKL+ELR
Sbjct: 643 ELDTIFSDPLKAQQALELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELR 702
Query: 480 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 539
K+RIFIPNGR+MMGCLDETR L YG+VFVQ S ++QLH + +F +S + FIV G
Sbjct: 703 MKSRIFIPNGRAMMGCLDETRNLEYGEVFVQCSA--HQQLHDDRVIFKRIKSNRHFIVTG 760
Query: 540 LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVC 599
VVVAKNPCLHPGDVRVL AV+VP+LHHM+DCVVFPQKG RPHPNECSGSDLDGDIYFVC
Sbjct: 761 TVVVAKNPCLHPGDVRVLTAVDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVC 820
Query: 600 WDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADRE 659
WD +LIPPQQ PMDYTP S LDHDV +E+V+EYF NY+VNDSLGIIANAHT FAD+E
Sbjct: 821 WDPDLIPPQQVEPMDYTPVPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKE 880
Query: 660 PRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGK 719
P+KA S PC+QLA+ FSIAVDFPKTGVPA IP +L VKEYPDFM+K DK TYES+NV+GK
Sbjct: 881 PKKAMSNPCIQLAKLFSIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGK 940
Query: 720 LFRAVKDIAPHTSCIRLF--TKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLM 777
LFR + I P+ IR F T E+AR+ YDPDMEV+GFE+++DDAIYHK NYD +LGNLM
Sbjct: 941 LFRMLDSIGPNIKNIRSFNYTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLM 1000
Query: 778 DYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKS----GSDTE 833
Y+ IKTEAE+++G + S SFT + +AE+I +AV++LRKEAR WF EK+ G T
Sbjct: 1001 HYHKIKTEAELISGGSLTSSLSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHT- 1059
Query: 834 DDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTS 885
+ YA+ASAWY VTYH YWG + N HFLSFPWCVYD+L+ IK K +
Sbjct: 1060 -NVYARASAWYFVTYHHTYWGWSDGRKNHGHFLSFPWCVYDKLIRIKHRKIN 1110
>gi|377347180|dbj|BAL63010.1| RNA-dependent RNA polymerase 1 [Cucumis sativus]
Length = 1115
Score = 1212 bits (3136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/892 (65%), Positives = 714/892 (80%), Gaps = 14/892 (1%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKI 60
+E+ Y +LP+F + FAY+KE + +F L +GS YS +++LVP+V PP I LPY ILFKI
Sbjct: 226 LEILYGRQLPNFHDKFAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKI 285
Query: 61 NLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR 120
NLLVQ GC+ GP LD +FY++VD + + I+HAL KL HLKECCY PS+WL ++YR
Sbjct: 286 NLLVQQGCLPGPALDISFYQMVD--SQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYR 343
Query: 121 KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRI 180
KY ++ P P ++L++GLVYVHRVQVTP +VYFCGPE+N+SNRVLR + IDNFLR+
Sbjct: 344 KYFKLKNPPQPPILTLNEGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRV 403
Query: 181 SFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLR 240
SF+DE+L K++ST+LSPR SS+ + +T+I RILS LR+GI IGD+KFEFLA+SSSQLR
Sbjct: 404 SFVDEELGKMYSTELSPRASSSLEDGKTKILKRILSVLRDGITIGDKKFEFLAYSSSQLR 463
Query: 241 ESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIP 300
E++AWMFA + LTAA+IR+WMG+F IRNVAKYAARLGQ F SS ETLSV E+++IP
Sbjct: 464 ENAAWMFAPKNELTAAKIRQWMGDFHNIRNVAKYAARLGQPFGSSTETLSVSRREVKVIP 523
Query: 301 DVKIEIGK-TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS 359
D+++E G YVFSDGIGK++A FARKVA KCG++ + PSAFQIRY G+KGV++ DPTS
Sbjct: 524 DIEVESGSGVNYVFSDGIGKIAASFARKVAKKCGIR-HTPSAFQIRYAGFKGVISVDPTS 582
Query: 360 SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 419
S KLSLR+SM KYES TKLDVL+WSKY PCFLNRQLI+LLSTLG+ D +FE KQ+E +
Sbjct: 583 SVKLSLRNSMLKYESTDTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELID 642
Query: 420 QLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 479
+LD I +DPLKAQ+ALELMSPGENT ILKE+++CGYKPD+EPFL MML TFR SKL+ELR
Sbjct: 643 ELDTIFSDPLKAQQALELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELR 702
Query: 480 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 539
K+RIFIPNGR+MMGCLDETR L YG+VF Q S ++QLH + +F +S + FIV G
Sbjct: 703 MKSRIFIPNGRAMMGCLDETRNLEYGEVFWQCSA--HQQLHDDRVIFKRIKSNRHFIVTG 760
Query: 540 LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVC 599
VVVAKNPCLHPGDVRVL AV+VP+LHHM+DCVVFPQKG RPHPNECSGSDLDGDIYFVC
Sbjct: 761 TVVVAKNPCLHPGDVRVLTAVDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVC 820
Query: 600 WDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADRE 659
WD +LIPPQQ PMDYTP S LDHDV +E+V+EYF NY+VNDSLGIIANAHT FAD+E
Sbjct: 821 WDPDLIPPQQVEPMDYTPVPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKE 880
Query: 660 PRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGK 719
P+KA S PC+QLA+ FSIAVDFPKTGVPA IP +L VKEYPDFM+K DK TYES+NV+GK
Sbjct: 881 PKKAMSNPCIQLAKLFSIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGK 940
Query: 720 LFRAVKDIAPHTSCIRLF--TKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLM 777
LFR + I P+ IR F T E+AR+ YDPDMEV+GFE+++DDAIYHK NYD +LGNLM
Sbjct: 941 LFRMLDSIGPNIKNIRSFNYTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLM 1000
Query: 778 DYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKS----GSDTE 833
Y+ IKTEAE+++G + S SFT + +AE+I +AV++LRKEAR WF EK+ G T
Sbjct: 1001 HYHKIKTEAELISGGSLTSSLSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHT- 1059
Query: 834 DDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTS 885
+ YA+ASAWY VTYH YWG + N HFLSFPWCVYD+L+ IK K +
Sbjct: 1060 -NVYARASAWYFVTYHHTYWGWSDGRKNHGHFLSFPWCVYDKLIRIKHRKIN 1110
>gi|4138343|emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
Length = 775
Score = 1191 bits (3080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/783 (73%), Positives = 657/783 (83%), Gaps = 9/783 (1%)
Query: 93 CIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSR 152
CIEHAL+KLY+LKECCY+P RWLT QY +Y+ R P SP+I+LDDGL+YV RV VTP +
Sbjct: 1 CIEHALEKLYNLKECCYDPVRWLTKQYDEYLKRRQLPKSPSITLDDGLMYVRRVLVTPCK 60
Query: 153 VYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYT 212
VYF GPE+NVSNRVLR++ DIDNFLR+SF+DE+ +KI S DL PR + + RT IY
Sbjct: 61 VYFLGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIFSMDLLPRANR--NGIRTDIYE 118
Query: 213 RILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVA 272
RILSTL+NG++IG +KFEFLAFSSSQLR++S WMFASR GLTA +IR WMG+F++IRNVA
Sbjct: 119 RILSTLQNGLVIGAKKFEFLAFSSSQLRDNSVWMFASRPGLTAYDIRTWMGDFQQIRNVA 178
Query: 273 KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC 332
KYAARLGQSF SS+ETLSV EI+ IPDV E+ T YVFSDGIGK+SA+FA +VA KC
Sbjct: 179 KYAARLGQSFGSSRETLSVGRHEIKYIPDV--EVHGTNYVFSDGIGKISADFAHRVAKKC 236
Query: 333 GLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFL 392
GL+ + PSAFQIRYGGYKGVVA DP S KLSLR SM KYES TKLDVL WSKYQPC+L
Sbjct: 237 GLQ-HTPSAFQIRYGGYKGVVAVDPYSPMKLSLRKSMLKYESNNTKLDVLGWSKYQPCYL 295
Query: 393 NRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLI 452
NRQL++L+STLG+ DE+F++KQ EAV QLDAIL D LKAQEAL+LMSPGENTNILKE+L
Sbjct: 296 NRQLVTLMSTLGVKDEVFKRKQNEAVAQLDAILHDSLKAQEALDLMSPGENTNILKEMLN 355
Query: 453 CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQIS 512
CGY PDAEPFLSMMLQTFRASKLL+LRT+TRIFIP GRSMMGCLDE+RTL YGQVFVQ +
Sbjct: 356 CGYLPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPKGRSMMGCLDESRTLEYGQVFVQFT 415
Query: 513 GAGYRQLHGESSLFSSSRSRQ-RFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDC 571
GAG RQ + ES F+ S S FI++G VVVAKNPCLHPGD+RVLKAV+VPALHHMVDC
Sbjct: 416 GAGGRQFYEESHHFNDSGSANYNFILKGNVVVAKNPCLHPGDIRVLKAVDVPALHHMVDC 475
Query: 572 VVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIED 631
VVFPQKG RPHPNECSGSDLDGDIYFVCWD +LIPP+Q PMDYTPA S+QLDHDV IE+
Sbjct: 476 VVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQPMDYTPAPSIQLDHDVTIEE 535
Query: 632 VEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIP 691
VEEYFTNY+VND LG+IANAH VFADREP A S+PC++LA+ FSIAVDFPKTGVPAEIP
Sbjct: 536 VEEYFTNYMVNDGLGVIANAHVVFADREPNMAMSDPCIELAQLFSIAVDFPKTGVPAEIP 595
Query: 692 PHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDME 751
L KEYPDFMEKPDK TY S+ VIGKLFR VKD S I FT++VARRSYD D+E
Sbjct: 596 SQLRPKEYPDFMEKPDKTTYHSEKVIGKLFREVKDKTTQASSITTFTRDVARRSYDTDLE 655
Query: 752 VDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGM 811
VDGFED+ID+A +K YD KLGNLMDYYGIKTEAE L+G IMK SK+F +RRDAEAIG+
Sbjct: 656 VDGFEDYIDEAFDYKSEYDKKLGNLMDYYGIKTEAETLSGGIMKASKTFDRRRDAEAIGV 715
Query: 812 AVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWC 871
AVR+LRKEAR WFK +S DD AKASAWYHV YHP YWGCYN+G+ RDHF+SFPWC
Sbjct: 716 AVRSLRKEARTWFKRRSDI---DDLLAKASAWYHVAYHPTYWGCYNEGLKRDHFISFPWC 772
Query: 872 VYD 874
VYD
Sbjct: 773 VYD 775
>gi|356519367|ref|XP_003528344.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
Length = 1135
Score = 1189 bits (3077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/893 (64%), Positives = 707/893 (79%), Gaps = 17/893 (1%)
Query: 1 MELPYRLELPDFKENFAYYKESEDR-FVLETGSAYSRSLDLVPIVGPPDGIALPYEILFK 59
ELP +E+P F +++ Y E +D F LE +S + VPIV PP+G LPY+ILFK
Sbjct: 217 FELPQSIEVPKFNQHYRNYSEVDDSIFTLEKHLGFSSNFKFVPIVIPPEGFNLPYKILFK 276
Query: 60 INLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQY 119
IN L+Q+GC+ +D N + LVDP R V + IE AL KL +KECCYEP++WL QY
Sbjct: 277 INSLIQHGCLPVLAIDINLFHLVDPRR--VRLEYIESALHKLDQMKECCYEPAQWLEKQY 334
Query: 120 RKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLR 179
KY T+ P S AISLDDGLVYVHRVQVTPS++YFCGPE+N+SNRVLR++ D DNFLR
Sbjct: 335 NKYSTNSLVPLSSAISLDDGLVYVHRVQVTPSKIYFCGPEVNLSNRVLRNYPEDTDNFLR 394
Query: 180 ISFIDEDLDKIHSTDLSPRGSSATDITR-TRIYTRILSTLRNGILIGDRKFEFLAFSSSQ 238
+SF+DED+DK+HS DL PR SS+TD+ R T+++ R+LSTL+NGI IGD+KFEFLAFS SQ
Sbjct: 395 VSFVDEDMDKLHSADLVPR-SSSTDVDRETKLHERVLSTLKNGIAIGDKKFEFLAFSPSQ 453
Query: 239 LRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI 298
LR++S WMFASR GLTA++IR+WMG F EIRNVAKYAARLGQSFSSS+ET+SV EIEI
Sbjct: 454 LRDNSVWMFASRTGLTASDIRKWMGEFHEIRNVAKYAARLGQSFSSSRETVSVGEHEIEI 513
Query: 299 IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNP-PSAFQIRYGGYKGVVAADP 357
IPD+++ G+TKY F+DGIGK+S+E A++VA KCG +DN PSAFQIRYGGYKGVVA DP
Sbjct: 514 IPDIELRRGETKYCFTDGIGKISSELAQEVAKKCGCRDNNIPSAFQIRYGGYKGVVAIDP 573
Query: 358 TSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREA 417
TSS KLSLR SM KY+SE TKLDVLAWSKY+PC+LNRQ+I+LLSTLG+ D +F KKQRE
Sbjct: 574 TSSTKLSLRKSMFKYKSENTKLDVLAWSKYKPCYLNRQIITLLSTLGVKDRVFRKKQREI 633
Query: 418 VRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLE 477
+ QL I T PL L+LM GE TNIL+E+LICG+ EPFLSMMLQT ASKL E
Sbjct: 634 LNQLKMISTKPLMV---LDLMFTGEITNILREMLICGFHQTKEPFLSMMLQTLCASKLQE 690
Query: 478 LRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSR---SRQR 534
L+ KTRI + GR+++GCLDETRTL YG+VFVQI+ +Q+H SL SS+R ++ +
Sbjct: 691 LQLKTRILVKKGRALLGCLDETRTLKYGEVFVQIAHQRNKQIHAMPSL-SSNRYGGNKSK 749
Query: 535 FIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGD 594
IV+G VVVAKNPCLHPGDVR+L+AV+VP+LHHMVDCVVFPQKG RPHPNECSGSDLDGD
Sbjct: 750 HIVKGKVVVAKNPCLHPGDVRILRAVDVPSLHHMVDCVVFPQKGRRPHPNECSGSDLDGD 809
Query: 595 IYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTV 654
IYFV WD +LIPP Q+ PMD+ P+Q M +DHDV +++V+EYF +YIV D LGI+A+AHTV
Sbjct: 810 IYFVSWDPDLIPPHQENPMDHAPSQVMNVDHDVTLQEVQEYFAHYIVEDRLGIVASAHTV 869
Query: 655 FADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQ 714
FAD++P KA S C +LA+ SIAVDF K+GVPAEIP HL V+EYPDFMEKPDKP+Y+S
Sbjct: 870 FADKDPEKAMSPACTELAKLHSIAVDFAKSGVPAEIPQHLRVEEYPDFMEKPDKPSYQSN 929
Query: 715 NVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLG 774
++IGKL+R V+++A H + + FT+ VAR+SYDPDME+DGFE + A +K YD+KLG
Sbjct: 930 SIIGKLYREVRNVAQHKNLNKTFTRRVARQSYDPDMEIDGFEKYTATACEYKNMYDFKLG 989
Query: 775 NLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFK---EKSGSD 831
NLMDYYGI+TEAEI++G+I+KMSKSF +R+D E I AV +LRKE R+WF KS S
Sbjct: 990 NLMDYYGIETEAEIISGNILKMSKSFNERKDLEGINHAVMSLRKETRSWFNVMVNKSNSQ 1049
Query: 832 TEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKT 884
DAYA ASAWY VTYHP YWG YNQG+NR HFLSFPWCV+D L++IKKDK
Sbjct: 1050 GR-DAYAIASAWYLVTYHPRYWGSYNQGLNRGHFLSFPWCVHDTLIQIKKDKV 1101
>gi|307135834|gb|ADN33705.1| RNA-dependent RNA polymerase [Cucumis melo subsp. melo]
Length = 1137
Score = 1174 bits (3037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/901 (63%), Positives = 695/901 (77%), Gaps = 21/901 (2%)
Query: 9 LPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGC 68
LP F + YK + D F+L GS++ + +LVPI+ PP + Y+ILFKIN L+Q G
Sbjct: 253 LPPFFQTLVGYKVTYDPFILRKGSSFVSNSNLVPIITPPQAFDISYKILFKINALLQRGY 312
Query: 69 VAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSK 128
++GP LD F+RLVD R IEHAL+KL++LKECCY+P +WL DQY Y S
Sbjct: 313 LSGPTLDDEFFRLVDSSR--FHPDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYVSNQL 370
Query: 129 PSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD 188
P P +SLDDGLVYVHRVQ+TP +VYFCGPE N+SNRV+R F DIDNFLR+SF+DE+LD
Sbjct: 371 PWKPNVSLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIDDIDNFLRVSFVDEELD 430
Query: 189 KIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA 248
K+HS DL+PR SS + TRTR+Y R++S L+NGI+IGD+KFEFLAFS+SQLRE+S WMFA
Sbjct: 431 KLHSIDLAPRSSSPENNTRTRVYDRVVSVLKNGIVIGDKKFEFLAFSASQLRENSFWMFA 490
Query: 249 SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK 308
SR GL+AA+IREWMG+FR+IRNVAKYAARLGQSF SS++TL V EIE+IPDV++E
Sbjct: 491 SRKGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVKEHEIEVIPDVEVERKN 550
Query: 309 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDS 368
Y FSDGIGK+S A+KVA KCGL + PSAFQIRY GYKGVVA DPTS KKLSLR S
Sbjct: 551 IMYCFSDGIGKISKTLAKKVAKKCGLTGHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKS 610
Query: 369 MRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 428
M KY S T+LDVL WSKYQPCFLNRQ+I+LLSTLGI D++F KKQ+EA+ QLD+IL DP
Sbjct: 611 MLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDP 670
Query: 429 LKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN 488
+A E LELMSPGE T+ILKELL Y P+ EPFL+MML TFRA+KLL+L+TK+RIF+P
Sbjct: 671 SRALEVLELMSPGEMTSILKELL-SFYMPNEEPFLNMMLWTFRANKLLDLKTKSRIFVPR 729
Query: 489 GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 548
GR+MMGCLDETRTL YGQVFV S G S F+V+G VVVAKNPC
Sbjct: 730 GRTMMGCLDETRTLEYGQVFVHCSVPG-------------RSSEGNFVVKGKVVVAKNPC 776
Query: 549 LHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQ 608
LHPGDVR+L A++V ALHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD EL +
Sbjct: 777 LHPGDVRLLDAIDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDSELTCIK 836
Query: 609 QDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPC 668
Q PM Y PA S+QLDHDV IE+V++YF NY+VND LG IANAHTVFAD+ +KA S C
Sbjct: 837 QVKPMSYEPAPSIQLDHDVTIEEVQKYFANYMVNDGLGAIANAHTVFADKNSKKAMSAEC 896
Query: 669 LQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIA 728
++LA+ FSIAVDFPKTGVPA +P +L V EYPDFM+KPDKPTY S V+GKLFR VKD++
Sbjct: 897 IKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPDKPTYVSNGVLGKLFRGVKDVS 956
Query: 729 PHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEI 788
+ +FTKEVA + YDPDMEVDGFE ++ +A +K YD+KLGNLMDYYGIKTE E+
Sbjct: 957 SDVNTFEIFTKEVATKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPEL 1016
Query: 789 LTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSG----SDTEDDAYAKASAWY 844
++G+I+KM+KSF KR D E I A+++LRKE R+WF E D EDD YA+ASAWY
Sbjct: 1017 VSGNILKMAKSFDKRNDLEQIAFAMKSLRKEVRSWFNENESKYTYEDIEDDEYARASAWY 1076
Query: 845 HVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNAFPALEQQFR-QGLRM 903
VTYHPDYWG YN+G RDHFLSFPWCV D+L++IK++K S+ N+ P Q+ G+ +
Sbjct: 1077 CVTYHPDYWGRYNEGTQRDHFLSFPWCVADKLIQIKREKMSLRNSSPMSSLQYNFDGMSL 1136
Query: 904 Y 904
Y
Sbjct: 1137 Y 1137
>gi|242066062|ref|XP_002454320.1| hypothetical protein SORBIDRAFT_04g028630 [Sorghum bicolor]
gi|241934151|gb|EES07296.1| hypothetical protein SORBIDRAFT_04g028630 [Sorghum bicolor]
Length = 1114
Score = 1156 bits (2991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/895 (63%), Positives = 691/895 (77%), Gaps = 24/895 (2%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKI 60
+E+P + ELP + F YYKE F G +YS LVPIV PD I +PYEILFKI
Sbjct: 233 LEVPQQCELPRIGDYFVYYKERNLDFECRNGYSYSCGNCLVPIVKSPDYIEVPYEILFKI 292
Query: 61 NLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR 120
N LVQNG ++GP +D +F+ V P P I I+ AL K+ +LK C P+ WL+ QY
Sbjct: 293 NHLVQNGTLSGPTVDHSFFCHVSPEFEP--IDHIKRALLKMSYLKSTCLNPTNWLSVQYS 350
Query: 121 KYMTSR-SKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLR 179
+ SR + S ISLDDGLVYVHRVQVTP++VYF GPEINVSNRV+R+F DIDNFLR
Sbjct: 351 RIRRSRHASQRSSNISLDDGLVYVHRVQVTPAKVYFYGPEINVSNRVVRNFSADIDNFLR 410
Query: 180 ISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL 239
ISF+DED +K+ S DLSPR +S D RT +Y R+LS L NGI IGD+ FEFLAFSSSQL
Sbjct: 411 ISFVDEDCEKLRSLDLSPRSTSGNDARRTALYNRVLSVLSNGINIGDKHFEFLAFSSSQL 470
Query: 240 RESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEII 299
R++SAWMFASR GLTA++IR+WMG+FR+IRNVAKYAARLGQSFSSS ETL V E+E I
Sbjct: 471 RDNSAWMFASRQGLTASDIRKWMGDFRDIRNVAKYAARLGQSFSSSTETLIVRKHEVEQI 530
Query: 300 PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS 359
PD+K T Y+FSDG+GK+SA FA++VA KC L+ PS FQIRYGGYKGVVA DP S
Sbjct: 531 PDIK---NGTNYIFSDGVGKISANFAKEVAMKCKLRRFAPSVFQIRYGGYKGVVAVDPRS 587
Query: 360 SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 419
++KLSLR SM K++SE LDVLA+SKYQPCFLNRQLI+LLSTLG+ D +FE KQ+EA++
Sbjct: 588 NRKLSLRRSMLKFQSENITLDVLAYSKYQPCFLNRQLITLLSTLGVGDNVFELKQKEAIK 647
Query: 420 QLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 479
QL+ ++T+P A+EA+ELM GE TN++KELL CGY+PD EP+LSM+LQTFRASKLLEL+
Sbjct: 648 QLNRMVTEPQAAREAVELMPMGEVTNVVKELLSCGYQPDHEPYLSMLLQTFRASKLLELK 707
Query: 480 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 539
TK+RIFI GR+MMGCLDETRTL YGQVF+Q S + + +V G
Sbjct: 708 TKSRIFITQGRAMMGCLDETRTLKYGQVFIQAS--------------YCADDHHKIVVTG 753
Query: 540 LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVC 599
VVVAKNPCLHPGD+RVL+AV+VP+LHHM DCVVFPQ+G RPHPNECSGSDLDGDIYFV
Sbjct: 754 KVVVAKNPCLHPGDIRVLQAVDVPSLHHMFDCVVFPQQGPRPHPNECSGSDLDGDIYFVS 813
Query: 600 WDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADRE 659
WD +LIP + PMDYTPA + LDHDV IE+++EYFTNYIVN+SLGIIANAH V+AD+E
Sbjct: 814 WDPDLIPSHMEDPMDYTPAPAETLDHDVTIEEIQEYFTNYIVNESLGIIANAHVVYADKE 873
Query: 660 PRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGK 719
KA+S PCL+LA+ FSIAVDFPKTGVPA IPP L+VKEYPDFMEK DK TYES+ VIGK
Sbjct: 874 DLKAKSRPCLELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFMEKLDKATYESKGVIGK 933
Query: 720 LFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDY 779
L+R +K PH IR FT+EVA+RSYD D+ VDG+ED+I +AI K YD++LGNLMD+
Sbjct: 934 LYREIKKHTPH---IRHFTREVAKRSYDTDLIVDGYEDYITEAIEFKEEYDFRLGNLMDH 990
Query: 780 YGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAY-A 838
YGIK+EAEI++G +KM+K+FTK DA+AI MAVR+LRKEAR+WF E S S+ + DA A
Sbjct: 991 YGIKSEAEIISGCFLKMAKNFTKSSDADAIRMAVRSLRKEARSWFNEMSTSEDDQDATEA 1050
Query: 839 KASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNAFPAL 893
KASAWYHVTY P YWG YN+G +R H +SFPWCVYD+LV IK+ + P L
Sbjct: 1051 KASAWYHVTYDPQYWGNYNEGYDRPHLISFPWCVYDKLVIIKQRRNFFTQMDPNL 1105
>gi|413938756|gb|AFW73307.1| putative RNA-dependent RNA polymerase [Zea mays]
Length = 933
Score = 1142 bits (2954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/886 (64%), Positives = 686/886 (77%), Gaps = 24/886 (2%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKI 60
+E+P + ELP + F YYKE F G +YS +LVPIV PD I +PYEILFKI
Sbjct: 58 LEVPQQCELPRIGDYFVYYKEQNLDFECRNGYSYSCGSNLVPIVKSPDYIEVPYEILFKI 117
Query: 61 NLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR 120
N LVQNG ++GP +D +F+R V P P I I+ AL K+ +LK C P+ WL+ QY
Sbjct: 118 NHLVQNGTLSGPTVDHSFFRHVSPKFEP--IDHIKRALLKMTYLKSTCLNPTDWLSVQYS 175
Query: 121 KYMTSRSKPSSPA-ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLR 179
+ SR + ISLDDGLVYVHRVQVTP++VYF GPEINVSNRV+RHF DIDNFLR
Sbjct: 176 RIRKSRHASQKLSNISLDDGLVYVHRVQVTPAKVYFYGPEINVSNRVVRHFSADIDNFLR 235
Query: 180 ISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL 239
ISF+DED +K+ S DLSPR +S D RT +Y R+LS L NGI IGD+ FEFLAFSSSQL
Sbjct: 236 ISFVDEDCEKLRSADLSPRSTSGNDARRTALYNRVLSVLSNGINIGDKHFEFLAFSSSQL 295
Query: 240 RESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEII 299
R++SAWMFASR GLTA++IR+WMG+FR+IRNVAKYAARLGQSFSSS ETL VH E+E I
Sbjct: 296 RDNSAWMFASRQGLTASDIRKWMGDFRDIRNVAKYAARLGQSFSSSTETLKVHKSEVERI 355
Query: 300 PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS 359
PD+ TKY+FSDG+GK+SA FA +VA KC LK PS FQIRYGGYKGVVA D S
Sbjct: 356 PDI---TNGTKYIFSDGVGKISANFAVEVAMKCKLKRFAPSVFQIRYGGYKGVVAVDTRS 412
Query: 360 SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 419
+ KLSLR SM K++SE LDVLA+SKYQPCFLNRQLI+LLSTLG+ D +FE KQ+EA+R
Sbjct: 413 NHKLSLRKSMSKFQSENITLDVLAYSKYQPCFLNRQLITLLSTLGVSDNVFELKQKEALR 472
Query: 420 QLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 479
QL+ ++T+P A+EA+ELM GE TN++KELL CGY+PD EP+LSM+LQTFRASKLLEL+
Sbjct: 473 QLNRMVTEPQAAREAVELMPMGEVTNVVKELLSCGYQPDHEPYLSMLLQTFRASKLLELK 532
Query: 480 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 539
TK+RIFI GR+MMGCLDET TL YGQVFVQ S S+ ++ +V G
Sbjct: 533 TKSRIFITQGRAMMGCLDETCTLKYGQVFVQAS--------------YSADDHRKVVVTG 578
Query: 540 LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVC 599
VVVAKNPCLHPGD+RVL+AV+VPALHH+ DCVVFPQ+G RPHPNECSGSDLDGDIYFV
Sbjct: 579 KVVVAKNPCLHPGDIRVLQAVDVPALHHLFDCVVFPQQGPRPHPNECSGSDLDGDIYFVS 638
Query: 600 WDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADRE 659
WD LIP + PMDYTPA + LDHDV IE+++EYFTNYIVN+SLGIIANAH VFAD+E
Sbjct: 639 WDPHLIPSRLVDPMDYTPASAETLDHDVTIEEIQEYFTNYIVNESLGIIANAHVVFADQE 698
Query: 660 PRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGK 719
KA S PC+QLA+ FSIAVDFPKTGVPA IP L+VKEYPDFMEK DK TYES+ VIGK
Sbjct: 699 RMKAESPPCVQLAKLFSIAVDFPKTGVPALIPHELHVKEYPDFMEKLDKVTYESKGVIGK 758
Query: 720 LFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDY 779
L+R +K PH I+ FT+EVARRSYD D+ VDG+ED+I +AI K YD++LGNLMD+
Sbjct: 759 LYREIKKHTPH---IKHFTREVARRSYDTDLIVDGYEDYITEAIEFKEEYDFRLGNLMDH 815
Query: 780 YGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKS-GSDTEDDAYA 838
YGIK+EAEI++G I+KM+K+FTK DA+AI MAVR+LRKEAR+WF E S G D +D A
Sbjct: 816 YGIKSEAEIISGCILKMAKNFTKSSDADAIRMAVRSLRKEARSWFNEMSTGEDGQDAMEA 875
Query: 839 KASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKT 884
KASAWYHVTYH YWG YN+G +R H +SFPWCVYD+LV IK+ +
Sbjct: 876 KASAWYHVTYHQQYWGSYNEGYDRPHLISFPWCVYDKLVAIKQGRN 921
>gi|197223664|gb|ACH53360.1| RNA-directed RNA polymerase 1a [Hordeum vulgare]
Length = 1114
Score = 1135 bits (2937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/888 (62%), Positives = 686/888 (77%), Gaps = 26/888 (2%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKI 60
+ELP LP+ +E FAYYK F G +YS + VPIV +PYEILFKI
Sbjct: 231 LELPADCYLPNIREYFAYYKNHNHDFHCMRGHSYSSNSCFVPIVKSQYFTDVPYEILFKI 290
Query: 61 NLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR 120
N LVQNG ++GP LD NFYRLV P V I I+HAL+ + +LK+ C P WL+++Y+
Sbjct: 291 NNLVQNGILSGPTLDDNFYRLVSP--GYVCIDHIKHALENMSYLKKTCLNPINWLSEKYK 348
Query: 121 KYMTSRSKPSSPAISLDD-GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLR 179
+ SR +SP I+LDD GL YV+RVQ+TP++VYF GPEINVSNRV+R++ D++NFLR
Sbjct: 349 EIQISRHMLTSPNIALDDDGLAYVYRVQITPAKVYFYGPEINVSNRVVRNYSADLENFLR 408
Query: 180 ISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL 239
ISF+DED +K+ STDLSPR + + +RT +Y RILS L NGI IG++ FEFLAFSSSQL
Sbjct: 409 ISFVDEDCEKLRSTDLSPRYAPGNNASRTALYNRILSVLSNGITIGNKHFEFLAFSSSQL 468
Query: 240 RESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEII 299
R++SAWMFASR GL+A++IREWMGNFR IRNVAKYAARLGQSFS+S ETL VH E++ +
Sbjct: 469 RDNSAWMFASRTGLSASDIREWMGNFRNIRNVAKYAARLGQSFSASTETLKVHKYEVQAL 528
Query: 300 PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS 359
P+V TKYVFSDGIG +SA+FA +V+ KC L PSAFQIRYGGYKGVVA DP S
Sbjct: 529 PEVT---NGTKYVFSDGIGTISADFADEVSRKCKLARFTPSAFQIRYGGYKGVVAIDPRS 585
Query: 360 SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 419
KLSLR SM K+ SE LDVLA+SKYQPCFLNRQLI+LLSTLG+ D IFE KQ+ AV
Sbjct: 586 HWKLSLRSSMSKFPSENITLDVLAYSKYQPCFLNRQLITLLSTLGVRDNIFELKQQAAVM 645
Query: 420 QLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 479
QL+ ++T+P A +A+ELM GE TN++KELL+CGY+PD EP+LSM+LQTFRASKLLEL+
Sbjct: 646 QLNRLVTEPQAAIDAIELMPMGEITNVVKELLLCGYQPDVEPYLSMILQTFRASKLLELK 705
Query: 480 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 539
TK+RIFIP GR+MMGCLDETRTL YG+VF+Q S +S+ +F+V G
Sbjct: 706 TKSRIFIPEGRAMMGCLDETRTLKYGEVFIQAS--------------NSANESDKFVVTG 751
Query: 540 LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVC 599
VVVAKNPCLHPGD+R+LKAV P L HMV+CVVFPQ+G RPHPNECSGSDLDGDIYFV
Sbjct: 752 KVVVAKNPCLHPGDIRILKAVYTPVLDHMVNCVVFPQQGPRPHPNECSGSDLDGDIYFVS 811
Query: 600 WDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADRE 659
WD +LIP + PMDYTPA + LDHDV IE+V EYF NYIVN+SLGIIANAH VFAD+E
Sbjct: 812 WDPDLIPTRMVAPMDYTPAPTETLDHDVVIEEVHEYFANYIVNESLGIIANAHVVFADKE 871
Query: 660 PRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGK 719
KA S C++LAE FSIAVD+PKTGVPA+IP L+V+EYPDFMEK D+ TY S+ VIGK
Sbjct: 872 SLKAESTQCIKLAELFSIAVDYPKTGVPAQIPSELHVREYPDFMEKLDRATYISKGVIGK 931
Query: 720 LFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDY 779
L+R +K +PH I FTK+VARRSYD D+ VDG++D+I +A++ KG YD+KLGNLM++
Sbjct: 932 LYREIKKQSPH---IGHFTKDVARRSYDTDLIVDGYQDYITEAVWFKGEYDFKLGNLMEH 988
Query: 780 YGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSG---SDTEDDA 836
YGIK+EAEI++G I+KM+K+FTK DA+AI +AV++LRKEAR+WF + S D + +
Sbjct: 989 YGIKSEAEIISGCILKMAKNFTKSSDADAIRLAVKSLRKEARSWFSDMSADESGDVHEAS 1048
Query: 837 YAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKT 884
YAKASAWYHVTYHP+Y+GCYN+ R H +SFPWCVYD+L+ IK+ K+
Sbjct: 1049 YAKASAWYHVTYHPEYYGCYNKIYERPHLISFPWCVYDKLLHIKQRKS 1096
>gi|40794967|gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare subsp. vulgare]
Length = 1115
Score = 1130 bits (2924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/888 (62%), Positives = 684/888 (77%), Gaps = 26/888 (2%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKI 60
+ELP LP+ +E F YYK F G +YS + VPIV +PYEILFKI
Sbjct: 231 LELPADCYLPNIREYFVYYKNHNHDFHCMRGHSYSSNSCFVPIVKSQYFTDVPYEILFKI 290
Query: 61 NLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR 120
N LVQNG ++GP LD NFY LV P V I I+HAL+ + +LK+ C P WL+++Y+
Sbjct: 291 NNLVQNGILSGPTLDDNFYSLVSP--GYVCIDHIKHALENMSYLKKTCLNPINWLSEKYK 348
Query: 121 KYMTSRSKPSSPAISLDD-GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLR 179
+ SR +SP I+LDD GL YV+RVQ+TP++VYF GPEINVSNRV+R++ D++NFLR
Sbjct: 349 EIQISRHMLTSPNIALDDDGLAYVYRVQITPAKVYFYGPEINVSNRVVRNYSADLENFLR 408
Query: 180 ISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL 239
ISF+DED +K+ STDLSPR + + +RT +Y RILS L NGI IG++ FEFLAFSSSQL
Sbjct: 409 ISFVDEDCEKLRSTDLSPRSAPGNNASRTALYNRILSVLSNGITIGNKHFEFLAFSSSQL 468
Query: 240 RESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEII 299
R++SAWMFASR GL+A++IREWMGNFR IRNVAKYAARLGQSFS+S ETL VH E++ +
Sbjct: 469 RDNSAWMFASRTGLSASDIREWMGNFRNIRNVAKYAARLGQSFSASTETLKVHKYEVQAL 528
Query: 300 PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS 359
P+V TKYVFSDGIG +SA+FA +V+ KC L PSAFQIRYGGYKGVVA DP S
Sbjct: 529 PEVT---NGTKYVFSDGIGTISADFADEVSRKCKLARFTPSAFQIRYGGYKGVVAIDPRS 585
Query: 360 SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 419
KLSLR SM K+ SE LDVLA+SKYQPCFLNRQLI+LLSTLG+ D IFE KQ+ AV
Sbjct: 586 HWKLSLRSSMSKFPSENITLDVLAYSKYQPCFLNRQLITLLSTLGVRDNIFELKQQAAVM 645
Query: 420 QLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 479
QL+ ++T+P A +A+ELM GE TN++KELL+CGY+PD EP+LSM+LQTFRASKLLEL+
Sbjct: 646 QLNRLVTEPQAAIDAIELMPMGEITNVVKELLLCGYQPDVEPYLSMILQTFRASKLLELK 705
Query: 480 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 539
TK+RIFIP GR+MMGCLDETRTL YG+VF+Q S +S+ +F+V G
Sbjct: 706 TKSRIFIPEGRAMMGCLDETRTLKYGEVFIQAS--------------NSANESDKFVVTG 751
Query: 540 LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVC 599
VVVAKNPCLHPGD+R+L+AV P L HMV+CVVFPQ+G RPHPNECSGSDLDGDIYFV
Sbjct: 752 KVVVAKNPCLHPGDIRILEAVYTPVLDHMVNCVVFPQQGPRPHPNECSGSDLDGDIYFVS 811
Query: 600 WDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADRE 659
WD +LIP + PMDYTPA + LDHDV IE+V EYF NYIVN+SLGIIANAH VFAD+E
Sbjct: 812 WDPDLIPTRMVAPMDYTPAPTETLDHDVVIEEVHEYFANYIVNESLGIIANAHVVFADKE 871
Query: 660 PRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGK 719
KA S C++LAE FSIAVD+PKTGVPA+IP L+V+EYPDFMEK D+ TY S+ VIGK
Sbjct: 872 SLKAESTQCIKLAELFSIAVDYPKTGVPAQIPSKLHVREYPDFMEKLDRATYISKGVIGK 931
Query: 720 LFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDY 779
L+R +K +PH I FTK+VARRSYD D+ VDG++D+I +A++ KG YD+KLGNLM++
Sbjct: 932 LYREIKKQSPH---IGHFTKDVARRSYDTDLIVDGYQDYITEAVWFKGEYDFKLGNLMEH 988
Query: 780 YGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSG---SDTEDDA 836
YGIK+EAEI++G I+KM+K+FTK DA+AI +AV++LRKEAR+WF + S D + +
Sbjct: 989 YGIKSEAEIISGCILKMAKNFTKSSDADAIRLAVKSLRKEARSWFSDMSADESGDVHEAS 1048
Query: 837 YAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKT 884
YAKASAWYHVTYHP+Y+GCYN+ R H +SFPWCVYD+L+ IK+ K+
Sbjct: 1049 YAKASAWYHVTYHPEYYGCYNKIYERPHLISFPWCVYDKLLHIKQRKS 1096
>gi|308080205|ref|NP_001183933.1| putative RNA-dependent RNA polymerase [Zea mays]
gi|254838301|gb|ACT83377.1| putative RNA-dependent RNA polymerase [Zea mays]
Length = 1108
Score = 1130 bits (2922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/879 (64%), Positives = 677/879 (77%), Gaps = 24/879 (2%)
Query: 8 ELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNG 67
ELP + F YYKE F G +YS LVPIV PD I +PYEILFKIN LVQNG
Sbjct: 240 ELPRIGDYFVYYKEQNLDFECRNGYSYSCGSSLVPIVKSPDYIEVPYEILFKINHLVQNG 299
Query: 68 CVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRS 127
++G +D +F+R V P P I I+ AL K+ +LK C P+ WL+ QY + SR
Sbjct: 300 TLSGSTVDHSFFRHVSPKFEP--IDHIKRALLKMTYLKSTCLNPTDWLSVQYSRIRKSRH 357
Query: 128 KPSSPA-ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED 186
+ ISLDDGLVYVHRVQVTP++VYF GPEINVSNRV+RHF DIDNFLRISF+DED
Sbjct: 358 ASQKLSNISLDDGLVYVHRVQVTPAKVYFYGPEINVSNRVVRHFSADIDNFLRISFVDED 417
Query: 187 LDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM 246
+K+ S DLSPR +S D RT +Y R+LS L NGI IGD+ FEFLAFSSSQLR++SAWM
Sbjct: 418 CEKLRSADLSPRSTSGNDARRTALYNRVLSVLSNGINIGDKHFEFLAFSSSQLRDNSAWM 477
Query: 247 FASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEI 306
FASR GLTA++IR+WMG+FR+IRNVAKYAA LGQSFSSS ETL VH E+E IPD+
Sbjct: 478 FASRQGLTASDIRKWMGDFRDIRNVAKYAAILGQSFSSSTETLKVHKSEVERIPDI---T 534
Query: 307 GKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLR 366
TKY+FSDG+GK+SA FA +VA KC LK PS FQIRYGGYKGVVA D S+ KLSLR
Sbjct: 535 NGTKYIFSDGVGKISANFAVEVAMKCKLKRFAPSVFQIRYGGYKGVVAVDTRSNHKLSLR 594
Query: 367 DSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT 426
SM K++SE LDVLA+SKYQPCFLNRQLI+LLSTLG+ D +FE KQ+EA+RQL+ ++T
Sbjct: 595 KSMSKFQSENITLDVLAYSKYQPCFLNRQLITLLSTLGVSDNVFELKQKEALRQLNRMVT 654
Query: 427 DPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 486
+P A+EA+ELM GE TN++KELL CGY+PD EP+LSM+LQTFRASKLLEL+TK+RIFI
Sbjct: 655 EPQAAREAVELMPMGEVTNVVKELLSCGYQPDHEPYLSMLLQTFRASKLLELKTKSRIFI 714
Query: 487 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 546
GR+MMGCLDET TL YGQVFVQ S S+ ++ +V G VVVAKN
Sbjct: 715 TQGRAMMGCLDETCTLKYGQVFVQAS--------------YSADDHRKVVVTGKVVVAKN 760
Query: 547 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIP 606
PCLHPGD+RVL+AV+VPALHH+ DCVVFPQ+G RPHPNECSGSDLDGDIYFV WD LIP
Sbjct: 761 PCLHPGDIRVLQAVDVPALHHLFDCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPHLIP 820
Query: 607 PQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSE 666
+ PMDYTPA + LDHDV IE+++EYFTNYIVN+SLGIIANAH VF D+E KA S
Sbjct: 821 SRLVDPMDYTPASAETLDHDVTIEEIQEYFTNYIVNESLGIIANAHVVFTDQERMKAESP 880
Query: 667 PCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKD 726
PC+QLA+ FSIAVDFPKTGVPA IP L+VKEYPDFMEK DK TYES+ VIGKL+R +K
Sbjct: 881 PCVQLAKLFSIAVDFPKTGVPALIPHELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKK 940
Query: 727 IAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEA 786
PH I+ FT+EVARRSYD D+ VDG+ED+I +AI K YD++LGNLMD+YGIK+EA
Sbjct: 941 HTPH---IKHFTREVARRSYDTDLIVDGYEDYITEAIEFKEEYDFRLGNLMDHYGIKSEA 997
Query: 787 EILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKS-GSDTEDDAYAKASAWYH 845
EI++G I+KM+K+FTK DA+AI MAVR+LRKEAR+WF E S G D +D AKASAWYH
Sbjct: 998 EIISGCILKMAKNFTKSSDADAIRMAVRSLRKEARSWFNEMSTGEDGQDAMEAKASAWYH 1057
Query: 846 VTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKT 884
VTYH YWG YN+G +R H +SFPWCVYD+LV IK+ +
Sbjct: 1058 VTYHQQYWGSYNEGYDRPHLISFPWCVYDKLVAIKQGRN 1096
>gi|197223666|gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]
Length = 1115
Score = 1126 bits (2913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/906 (61%), Positives = 695/906 (76%), Gaps = 31/906 (3%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKI 60
+ELP+ LP+ +E F YY+ D F L+ G +YS + VP+V +PYEILFKI
Sbjct: 231 LELPHICYLPNIREYFVYYEVHNDIFNLQPGYSYSSNTCFVPVVKSHYFTDVPYEILFKI 290
Query: 61 NLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR 120
N LVQNG ++GP LD NFYRLV P I I+ AL+K+ +LK+ C P+ WL++QY+
Sbjct: 291 NHLVQNGTLSGPTLDDNFYRLVSP--GYERIDRIKRALEKMSYLKKTCLNPTNWLSEQYK 348
Query: 121 KYMTSRSKPSSPAISLDD-GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLR 179
K SR +SP I+LDD GLVYV+RVQ+TP++VYF GPEINVSNRV+R++ D+DNFLR
Sbjct: 349 KMRRSRVL-TSPNITLDDDGLVYVYRVQITPAKVYFYGPEINVSNRVVRNYAADLDNFLR 407
Query: 180 ISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL 239
ISF+DED +K+ STDLS R + + RT +Y R+LS L NGI IGD+ F+FLAFSSSQL
Sbjct: 408 ISFVDEDCEKLRSTDLSQRSAPGNNTRRTALYNRVLSVLSNGITIGDKHFDFLAFSSSQL 467
Query: 240 RESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEII 299
R++SAWMFASR GL+A++IREWMGNFR IRNVAKYAARLGQSFSSS ETL VH E++
Sbjct: 468 RDNSAWMFASRPGLSASDIREWMGNFRNIRNVAKYAARLGQSFSSSTETLKVHKYEVKEA 527
Query: 300 PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS 359
PDV T+YVFSDGIG +SA+FA +V+ KC L PSAFQIRYGGYKGVVA DPTS
Sbjct: 528 PDVT---NGTEYVFSDGIGTISADFADEVSKKCNLTRFTPSAFQIRYGGYKGVVAIDPTS 584
Query: 360 SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 419
KLSLR SM K++S+ LDVLA+SKYQPCFLNRQLI+LLSTLG+ D IFE KQ+EAV+
Sbjct: 585 QWKLSLRKSMSKFQSDNITLDVLAYSKYQPCFLNRQLITLLSTLGVIDSIFELKQQEAVQ 644
Query: 420 QLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 479
QL+ ++ +P A +A+ELM GE TNI+KELL+CGY+PD EP++SM+LQTFRASKLLEL+
Sbjct: 645 QLNRMVAEPQAAIDAIELMPMGEITNIVKELLLCGYRPDVEPYVSMLLQTFRASKLLELK 704
Query: 480 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 539
T++RIF+P GR+MMGCLDETRTL YGQVF+Q S +S+ R + +V G
Sbjct: 705 TRSRIFVPKGRAMMGCLDETRTLKYGQVFIQAS--------------NSADDRGKSVVTG 750
Query: 540 LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVC 599
V+VAKNPC+HPGD+R+L+AV+ P L HMV+CVVFPQ G RPHPNECSGSDLDGDIYFV
Sbjct: 751 KVIVAKNPCIHPGDIRILQAVHSPLLGHMVNCVVFPQLGPRPHPNECSGSDLDGDIYFVS 810
Query: 600 WDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADRE 659
WD +LIP + PMDYTPA + LDHDV IE+V EYFTNYIVN+SLGIIANAH VFADR+
Sbjct: 811 WDPDLIPTRMVAPMDYTPAPTETLDHDVMIEEVHEYFTNYIVNESLGIIANAHVVFADRQ 870
Query: 660 PRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGK 719
KA S C++LAE FSIAVD+PKTGVPA+IP L+VKEYPDFMEK D+ TY S+ VIGK
Sbjct: 871 SLKAESTQCIKLAELFSIAVDYPKTGVPAQIPHELHVKEYPDFMEKLDRATYVSEGVIGK 930
Query: 720 LFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDY 779
L+R +K PH IR FTK+VA SYD D+ VDG++D+I +A++ K YD+KLGNLM++
Sbjct: 931 LYREIKKQNPH---IRHFTKDVATLSYDTDLIVDGYQDYITEAVWFKEEYDFKLGNLMEH 987
Query: 780 YGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAY-- 837
YGI +EAEI++G I+KM+K+FTK+ DA+AI +AV++LRKEAR+WF E GSD D +
Sbjct: 988 YGINSEAEIISGCILKMAKNFTKKSDADAIRLAVKSLRKEARSWFSEM-GSDESGDGHKA 1046
Query: 838 --AKASAWYHVTYHPDYWGCYNQGMN-RDHFLSFPWCVYDRLVEIKKDKTSIGNAFPALE 894
AKASAWYHVTYHP YWGCYN+G + R H +SFPWCVYD+L+ IK+ K +I L+
Sbjct: 1047 LVAKASAWYHVTYHPQYWGCYNKGYDHRPHLISFPWCVYDKLILIKQKK-NIARKMLDLQ 1105
Query: 895 QQFRQG 900
+ R+
Sbjct: 1106 NRMRRN 1111
>gi|40794965|gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]
Length = 1115
Score = 1126 bits (2912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/906 (61%), Positives = 695/906 (76%), Gaps = 31/906 (3%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKI 60
+ELP+ LP+ +E F YY+ D F L+ G +YS + VP+V +PYEILFKI
Sbjct: 231 LELPHICYLPNIREYFVYYEVHNDIFNLQPGYSYSSNTCFVPVVKSHYFTDVPYEILFKI 290
Query: 61 NLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR 120
N LVQNG ++GP LD NFYRLV P I I+ AL+K+ +LK+ C P+ WL++QY+
Sbjct: 291 NHLVQNGTLSGPTLDDNFYRLVSP--GYERIDRIKRALEKMSYLKKTCLNPTNWLSEQYK 348
Query: 121 KYMTSRSKPSSPAISLDD-GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLR 179
K SR +SP I+LDD GLVYV+RVQ+TP++VYF GPEINVSNRV+R++ D+DNFLR
Sbjct: 349 KMRRSRVL-TSPNITLDDDGLVYVYRVQITPAKVYFYGPEINVSNRVVRNYAADLDNFLR 407
Query: 180 ISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL 239
ISF+DED +K+ STDLS R + + RT +Y R+LS L NGI IGD+ F+FLAFSSSQL
Sbjct: 408 ISFVDEDCEKLRSTDLSQRSAPGNNTRRTALYNRVLSVLSNGITIGDKHFDFLAFSSSQL 467
Query: 240 RESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEII 299
R++SAWMFASR GL+A++IREWMGNFR IRNVAKYAARLGQSFSSS ETL VH E++
Sbjct: 468 RDNSAWMFASRPGLSASDIREWMGNFRNIRNVAKYAARLGQSFSSSTETLKVHKYEVKEA 527
Query: 300 PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS 359
PDV T+YVFSDGIG +SA+FA +V+ KC L PSAFQIRYGGYKGVVA DPTS
Sbjct: 528 PDVT---NGTEYVFSDGIGTISADFADEVSKKCNLTRFTPSAFQIRYGGYKGVVAIDPTS 584
Query: 360 SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 419
KLSLR SM K++S+ LDVLA+SKYQPCFLNRQLI+LLSTLG+ D IFE KQ+EAV+
Sbjct: 585 QWKLSLRKSMSKFQSDNITLDVLAYSKYQPCFLNRQLITLLSTLGVIDSIFELKQQEAVQ 644
Query: 420 QLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 479
QL+ ++ +P A +A+ELM GE TNI+KELL+CGY+PD EP++SM+LQTFRASKLLEL+
Sbjct: 645 QLNRMVAEPQAAIDAIELMPMGEITNIVKELLLCGYRPDVEPYVSMLLQTFRASKLLELK 704
Query: 480 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 539
T++RIF+P GR+MMGCLDETRTL YGQVF+Q S +S+ R + +V G
Sbjct: 705 TRSRIFVPKGRAMMGCLDETRTLKYGQVFIQAS--------------NSADDRGKSVVTG 750
Query: 540 LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVC 599
V+VAKNPC+HPGD+R+L+AV+ P L HMV+CVVFPQ G RPHPNECSGSDLDGDIYFV
Sbjct: 751 KVIVAKNPCIHPGDIRILQAVHSPLLGHMVNCVVFPQLGPRPHPNECSGSDLDGDIYFVS 810
Query: 600 WDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADRE 659
WD +LIP + PMDYTPA + LDHDV IE+V EYFTNYIVN+SLGIIANAH VFADR+
Sbjct: 811 WDPDLIPTRMVAPMDYTPAPTETLDHDVMIEEVHEYFTNYIVNESLGIIANAHVVFADRQ 870
Query: 660 PRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGK 719
KA S C++LAE FSIAVD+PKTGVPA+IP L+VKEYPDFMEK D+ TY S+ VIGK
Sbjct: 871 SLKAESTQCIKLAELFSIAVDYPKTGVPAQIPHELHVKEYPDFMEKLDRATYVSEGVIGK 930
Query: 720 LFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDY 779
L+R +K PH IR FTK+VA SYD D+ VDG++D+I +A++ K YD+KLGNLM++
Sbjct: 931 LYREIKKQNPH---IRHFTKDVATLSYDTDLIVDGYQDYITEAVWFKEEYDFKLGNLMEH 987
Query: 780 YGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAY-- 837
YGI +EAEI++G I+KM+K+FTK+ DA+AI +AV++LRKEAR+WF E GSD D +
Sbjct: 988 YGINSEAEIISGCILKMAKNFTKKSDADAIRLAVKSLRKEARSWFSEM-GSDESGDGHKA 1046
Query: 838 --AKASAWYHVTYHPDYWGCYNQGMN-RDHFLSFPWCVYDRLVEIKKDKTSIGNAFPALE 894
AKASAWYHVTYHP YWGCYN+G + R H +SFPWCVYD+L+ IK+ K +I L+
Sbjct: 1047 LVAKASAWYHVTYHPQYWGCYNEGYDHRPHLISFPWCVYDKLILIKQ-KKNIARKMLDLQ 1105
Query: 895 QQFRQG 900
+ R+
Sbjct: 1106 NRMRRN 1111
>gi|147853646|emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
Length = 654
Score = 1030 bits (2664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/664 (75%), Positives = 563/664 (84%), Gaps = 17/664 (2%)
Query: 246 MFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE 305
MFASR GLTAAEIR WMG+F +IRNVAKYAARLGQSFSSSKETL V DEIE IPD++I
Sbjct: 1 MFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIH 60
Query: 306 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL 365
+T YVFSDGIGK+S + A +VA KCG K + PSAFQIRYGGYKGVVA DPTSS+KLSL
Sbjct: 61 KXRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSL 120
Query: 366 RDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL 425
R SM KYES+ T LDVLAWSKYQP FLNRQLI+LLSTLG+ D +FEKKQR AV QLD IL
Sbjct: 121 RKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTIL 180
Query: 426 TDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 485
DP+ AQEALELMSPGENTN+LKE+L+CGYKPDAEPFLSMMLQTFRA+KLLELRTKTRIF
Sbjct: 181 KDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIF 240
Query: 486 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVVVA 544
+PNGRSMMGCLDETRTL YG+VFVQISG G RQ G+S +F S S FI++G +VVA
Sbjct: 241 VPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVA 300
Query: 545 KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDEL 604
KNPCLHPGDVRVL AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD +L
Sbjct: 301 KNPCLHPGDVRVLXAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDL 360
Query: 605 IPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKAR 664
IPPQQ PMDYTPA + ++VEEYFTNYIVNDSLGIIANAHTVFAD+E KA
Sbjct: 361 IPPQQINPMDYTPAPT---------KEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAY 411
Query: 665 SEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAV 724
+PC +LA+ FSIAVDFPKTGVPAEIP +L VKEYPDFMEK DKPTYESQ+VIGKLFR V
Sbjct: 412 CDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREV 471
Query: 725 KDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKT 784
KDIAPH IR FT++VAR+SYDPDMEV GFED++ DA Y+K YDYKLGNLMDYYGIKT
Sbjct: 472 KDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKT 531
Query: 785 EAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTE---DDAYAKAS 841
E+EIL+GSIM+MSKSF +R+DAEAIG+AV++LRKEAR WF K GS+T+ DD YAKAS
Sbjct: 532 ESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFN-KMGSETDSEADDVYAKAS 590
Query: 842 AWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNA--FPALEQQFRQ 899
AWYHVTYHPDYWGCYN+GM+RDHFLSFPWCVYD+L+ K+ K S G + +LE++ Q
Sbjct: 591 AWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMS-GRSLHLSSLERRLSQ 649
Query: 900 GLRM 903
GLR+
Sbjct: 650 GLRL 653
>gi|119370382|gb|ABL68088.1| putative RNA-directed RNA polymerase 1 [Nicotiana attenuata]
Length = 1044
Score = 1016 bits (2626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/886 (60%), Positives = 634/886 (71%), Gaps = 80/886 (9%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGS-AYSRSLDLVPIVGPPDGIALPYEILFK 59
+E + LP+F +F YYKES + + + ++ + L LVPIV P+G+ LPY+ILFK
Sbjct: 215 LEFHNGVRLPNFSGSFFYYKESGPSYFTDWFTFSFVQKLSLVPIVHLPEGVELPYKILFK 274
Query: 60 INLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQY 119
I+ L+Q+GC G L+ NF++LVDP R +I+CIEHAL+KLY+LKECCY+P RWLT+QY
Sbjct: 275 ISSLIQHGCFPGLALNFNFFQLVDPRRR--NIACIEHALEKLYYLKECCYDPVRWLTEQY 332
Query: 120 RKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLR 179
+Y+ R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR
Sbjct: 333 DEYLKHRQLPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLR 392
Query: 180 ISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL 239
+SF+DE+ +KIHSTDL PR S+ I RT IY RILSTLRNG +IGD+KFEFLAFSSSQL
Sbjct: 393 VSFVDEEWEKIHSTDLLPRASTGNGI-RTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQL 451
Query: 240 RESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEII 299
R++S WMFASR GLTA +IR WMG+FR+IRNVAKYAARLGQSF SS+ETLSV E+E+I
Sbjct: 452 RDNSVWMFASRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVSRHEVEVI 511
Query: 300 PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS 359
PDV + T Y+FSDGIGK+SA+FA+ S + F IRYGGYKGVVA DP S
Sbjct: 512 PDVVCSLHGTNYIFSDGIGKISADFAKMRPSVYSI------FFSIRYGGYKGVVAVDPYS 565
Query: 360 SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 419
S KLSLR+SM KYES KLDVL WSKYQPC+LNRQL++LLSTLG+ D++FE+KQ EAV
Sbjct: 566 SMKLSLRNSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVD 625
Query: 420 QLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 479
QLDAIL D LKAQEALELMSPGENTNILKE+L CGY PDAEPFLSMMLQTFRASKLL+LR
Sbjct: 626 QLDAILHDSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLR 685
Query: 480 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFS-SSRSRQRFIVQ 538
T++RIFI + + L YGQVFVQ +G G RQ + ES F+ S + F ++
Sbjct: 686 TRSRIFIAKWDAWL----NPEPLEYGQVFVQFTGTGRRQFYEESHPFNDSGSTNCNFTLE 741
Query: 539 GLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 598
G+V V K P LH GDI +
Sbjct: 742 -------------GNVVVAKN---PCLH-------------------------PGDIRVL 760
Query: 599 CWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADR 658
D PA L H +V EYFTNYIVN SLGIIANAH VFADR
Sbjct: 761 RAVD-------------VPA----LHH----MEVGEYFTNYIVNGSLGIIANAHVVFADR 799
Query: 659 EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIG 718
EP A S PC QLA+ FSIAV FPKTGVPA IP L +YPDFMEKPDKPTY S+ VIG
Sbjct: 800 EPAMAMSAPCKQLAQLFSIAVAFPKTGVPAGIPSQLRPTDYPDFMEKPDKPTYHSEKVIG 859
Query: 719 KLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMD 778
KLFR VKD P + I FT +VAR+SY DM V+GFED+ D+A Y+K YD KLGNLMD
Sbjct: 860 KLFRKVKDKTPQATSIATFTMDVARKSYAGDMIVNGFEDYTDEAFYYKSEYDNKLGNLMD 919
Query: 779 YYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYA 838
YYGIKTEAEIL+G +MK SK+F +R+DAEAIG+AVR+LRKEAR WFK++S DD A
Sbjct: 920 YYGIKTEAEILSGGVMKASKTFDRRKDAEAIGVAVRSLRKEARTWFKKRSDI---DDMLA 976
Query: 839 KASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKT 884
KASAWYHVTYH YWG YN+G+ RDHF+SFPWCVYD+L++IKK K
Sbjct: 977 KASAWYHVTYHHTYWGLYNEGLRRDHFISFPWCVYDQLIQIKKAKA 1022
>gi|251765121|sp|Q0DXS3.2|RDR1_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 1; Short=OsRDR1
Length = 740
Score = 1011 bits (2613), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/746 (65%), Positives = 589/746 (78%), Gaps = 23/746 (3%)
Query: 151 SRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRI 210
S VYF GPEINVSNRV+R+F DI+NFLRISF+DED +K+ +TDLSPR +S D RT +
Sbjct: 7 STVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTAL 66
Query: 211 YTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRN 270
Y R+LS L +GI IG + FEFLAFSSSQLR++SAWMFASR GL A++IR WMG+FR IRN
Sbjct: 67 YKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRN 126
Query: 271 VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS 330
VAKYAARLGQSFSSS ETL V E+E I D+K T++VFSDGIGK+S+ FA +VA
Sbjct: 127 VAKYAARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEVAM 183
Query: 331 KCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPC 390
KC LK PSAFQIRYGGYKGVVA DPTS KLSLR SM K++S+ +DVLA+SKYQP
Sbjct: 184 KCNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPG 243
Query: 391 FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKEL 450
FLNRQLI+LLSTLG+ D +FE+KQ EAV QL+ ++TDP A EA+ELM GE TN +KEL
Sbjct: 244 FLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKEL 303
Query: 451 LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQ 510
L+CGY+PD EP+LSM+LQTFRASKLLEL+TK+RI IP GR+MMGCLDETRTL YGQVF++
Sbjct: 304 LLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIR 363
Query: 511 ISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD 570
+ S RF V G VV+AKNPCLHPGD+R+L AV+VP LHHM +
Sbjct: 364 AT--------------SGVNDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFN 409
Query: 571 CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIE 630
CVVFPQ+G RPHPNECSGSDLDGDIYFV WD LIPP+ PMDYTPA + LDHDV IE
Sbjct: 410 CVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIE 469
Query: 631 DVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEI 690
+VEEYFTNYIVN+SLG+IANAH VFAD+E KA S PC++LA+ FSIAVDFPKTGVPA I
Sbjct: 470 EVEEYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALI 529
Query: 691 PPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDM 750
PP L+VKEYPDFMEK DK TYES+ VIGKL+R +K PH I+ FT+EVARRSYD DM
Sbjct: 530 PPELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPH---IKHFTREVARRSYDTDM 586
Query: 751 EVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIG 810
VDG+ED+I +A+ K YD+KLGNLMD+YGIK+EAEI++G I+KM+K+FTK+ DA+AI
Sbjct: 587 IVDGYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIR 646
Query: 811 MAVRALRKEARAWFKEKSGSDT---EDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLS 867
+AVR+LRKEAR+ F E S D D + AKASAWYHVTYHP++WGCYN+G R HF+S
Sbjct: 647 LAVRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFIS 706
Query: 868 FPWCVYDRLVEIKKDKTSIGNAFPAL 893
FPWC+Y++L+ IK+ + + P L
Sbjct: 707 FPWCIYEKLLRIKQRRKFVRKMQPEL 732
>gi|147860348|emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]
Length = 697
Score = 999 bits (2584), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/647 (76%), Positives = 555/647 (85%), Gaps = 5/647 (0%)
Query: 246 MFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE 305
MFASR GLTAA+IR MG+F +IRNVAKYAARLGQSFSSSKETL V EIEIIPD++I
Sbjct: 1 MFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIEIH 60
Query: 306 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL 365
T YVFSDGIGK+SAE A +VA KCG K + PSAFQIRYGGYKGVVA DPTSS+KLSL
Sbjct: 61 RDGTTYVFSDGIGKISAELAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSL 120
Query: 366 RDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL 425
R SM KYESE T LDVL+WSKY+PCFLNRQLI+LLSTLG+ D +FEKKQREAV QLD IL
Sbjct: 121 RKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTIL 180
Query: 426 TDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 485
DPL+AQEALELMSPGENTNILKE+L+CGYKPDAEPFLSMMLQTFRA+KLLELRTKTRIF
Sbjct: 181 KDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIF 240
Query: 486 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVVVA 544
+PNGRSMMGCLDETRTL YG+VFVQISG G RQ G+S +F S S FI++G VVVA
Sbjct: 241 VPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVA 300
Query: 545 KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDEL 604
KNPCLHPGDVR+L AV+VPALHHMVDCVVFPQKGMRPHP+ECSGSDLDGDIYFVCWD +L
Sbjct: 301 KNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDL 360
Query: 605 IPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKAR 664
IPP+Q PMDYTPA + LDHDV IE+VEEYFTNYI ND LGIIANAHTVFAD+E KA
Sbjct: 361 IPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKAL 420
Query: 665 SEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAV 724
PC +LA+ FSIA++FPKTGVPAEIP HL+VKEYPDFMEK +KPTYESQ+VIGKLFR V
Sbjct: 421 CPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREV 480
Query: 725 KDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKT 784
KD+APH IR FT++VA +SYD DMEVDGFED++ DA Y+K YD+KLG+LMD YGI+T
Sbjct: 481 KDVAPHNYDIRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCYGIRT 540
Query: 785 EAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDT---EDDAYAKAS 841
E+EIL+GS+MKMSKSF KR+DAEAI +AVR+LRKEAR WF K GS T DD YA AS
Sbjct: 541 ESEILSGSLMKMSKSFDKRKDAEAIALAVRSLRKEARTWFN-KMGSGTYAGADDVYAIAS 599
Query: 842 AWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTSIGN 888
AWYHVTYHP YWGCYN+GM DHFLSFPWCVYD+L++IK+DK SI +
Sbjct: 600 AWYHVTYHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDKMSISH 646
>gi|142942403|gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 935
Score = 963 bits (2490), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/680 (68%), Positives = 554/680 (81%), Gaps = 9/680 (1%)
Query: 7 LELPDFKENFAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLLV 64
+ LP+F+E+F +Y E E+ L+TG + S+ LVP V PP+GIA+PY+ILFKI+ LV
Sbjct: 221 VHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLV 280
Query: 65 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 124
Q+GC+ GP L+ F+RLVDP R +++CIE AL+KLY+LKECCY+P RWLT+QY Y
Sbjct: 281 QHGCIPGPALNVYFFRLVDPQRR--NVACIEQALEKLYYLKECCYDPVRWLTEQYDGYFK 338
Query: 125 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 184
R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+D
Sbjct: 339 GRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVD 398
Query: 185 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 244
E+ +K++ST+L P+ S+ I RT IY RILSTLR G +IGD+KFEFLAFSSSQLR++S
Sbjct: 399 EEWEKLYSTELLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSV 457
Query: 245 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 304
WMFASR GLTA +IR WMG+F +I+NVAKYAAR GQSF SS+ETLSV EIE+IPDVK+
Sbjct: 458 WMFASRRGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGSSRETLSVLRHEIEVIPDVKV 517
Query: 305 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLS 364
T YVFSDGIGK+SA+FARKVAS CGL+ P SAFQIRYGGYKGVVA DP SS KLS
Sbjct: 518 H--GTSYVFSDGIGKISADFARKVASNCGLQYTP-SAFQIRYGGYKGVVAVDPYSSMKLS 574
Query: 365 LRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 424
LR SM KYES+ KLDVL WSKYQPC+LNRQL++LLSTLG+ D++ E+KQ+EAV QLDAI
Sbjct: 575 LRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAI 634
Query: 425 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 484
L D LKAQEALELMSPGENTNILK +L CGY PDAEPFLSMMLQTFRASKLL+LRTK+RI
Sbjct: 635 LHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRI 694
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVVV 543
FIPNGR+MMGCLDE+RTL YGQVFVQ +GAG+R+ + F++SRS FI++G VVV
Sbjct: 695 FIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVV 754
Query: 544 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
AKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD +
Sbjct: 755 AKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQD 814
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
+IPP+Q M++ P S+QLDHDV IE+VEEYFTNYIVND LGIIANAH VFADREP A
Sbjct: 815 MIPPRQVQAMEFPPPPSIQLDHDVTIEEVEEYFTNYIVNDGLGIIANAHVVFADREPDMA 874
Query: 664 RSEPCLQLAEKFSIAVDFPK 683
S L F + F +
Sbjct: 875 MSNHAKNLLSSFQLQWTFQR 894
>gi|142942513|gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 841
Score = 911 bits (2355), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/627 (70%), Positives = 524/627 (83%), Gaps = 9/627 (1%)
Query: 7 LELPDFKENFAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLLV 64
+ LP+F+E+F +Y E E+ L+TG + S+ LVP V PP+GIA+PY+ILFKI+ LV
Sbjct: 221 VHLPNFQESFFHYTERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLV 280
Query: 65 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 124
Q+GC+ GP L+ F+RLVDP R +++CIE AL+KLY+LKECCY+P RWLT+QY Y+
Sbjct: 281 QHGCIPGPALNVYFFRLVDPQRR--NVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLK 338
Query: 125 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 184
R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+D
Sbjct: 339 GRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVD 398
Query: 185 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 244
E+ +K++STDL P+ S+ I RT IY RILSTLR G +IGD+KFEFLAFSSSQLR++S
Sbjct: 399 EEWEKLYSTDLLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSV 457
Query: 245 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 304
WMFASR GLTA +IR WMG+F +I+NVAKYAARLGQSF SSKETLSV EIE+IPDVK+
Sbjct: 458 WMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKV 517
Query: 305 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLS 364
T YVFSDGIGK+SA+FAR+VASKCGL+ P SAFQIRYGGYKGVVA DP SS KLS
Sbjct: 518 H--GTSYVFSDGIGKISADFARRVASKCGLQYTP-SAFQIRYGGYKGVVAVDPYSSMKLS 574
Query: 365 LRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 424
LR SM KYES+ KLDVL WSKYQPC+LNRQL++LLSTLG+ D++ E+KQ+EAV QLDAI
Sbjct: 575 LRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAI 634
Query: 425 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 484
L D LKAQEALELMSPGENTNILK +L CGY PDAEPFLSMMLQTFRASKLL+LRT++RI
Sbjct: 635 LHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRI 694
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVVV 543
FIPNGR+MMGCLDE+RTL YGQVFVQ +GAG+R+ + F++SRS FI++G VVV
Sbjct: 695 FIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVV 754
Query: 544 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
AKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD +
Sbjct: 755 AKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQD 814
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIE 630
+IPP+Q PM+Y PA S+QLDHDV IE
Sbjct: 815 MIPPRQVQPMEYPPAPSIQLDHDVTIE 841
>gi|113205325|gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1180
Score = 909 bits (2350), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/627 (70%), Positives = 523/627 (83%), Gaps = 9/627 (1%)
Query: 7 LELPDFKENFAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLLV 64
+ LP+F+E F +Y E E+ L+TG + S+ LVP V PP+GIA+PY+ILFKI+ LV
Sbjct: 187 VHLPNFQEIFFHYTERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLV 246
Query: 65 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 124
Q+GC+ GP LD F+RLVDP R +++CIE AL+KLY+LKECCY+P RWLT+QY Y+
Sbjct: 247 QHGCIPGPALDVYFFRLVDPQRR--NVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLK 304
Query: 125 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 184
R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+D
Sbjct: 305 GRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVD 364
Query: 185 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 244
E+ +K++STDL P+ S+ I RT IY RILSTLR G +IGD+KFEFLAFSSSQLR++S
Sbjct: 365 EEWEKLYSTDLLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSV 423
Query: 245 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 304
WMFASR GLTA +IR WMG+F +I+NVAKYAARLGQSF SSKETLSV EIE+IPDVK+
Sbjct: 424 WMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKV 483
Query: 305 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLS 364
T YVFSDGIGK+SA+FAR+VASKCGL+ P SAFQIRYGGYKGVVA DP SS KLS
Sbjct: 484 H--GTSYVFSDGIGKISADFARRVASKCGLQYTP-SAFQIRYGGYKGVVAVDPYSSMKLS 540
Query: 365 LRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 424
LR SM KYES+ KLDVL WSKYQPC+LNRQL++LLSTLG+ D++ E+KQ+EAV QLDAI
Sbjct: 541 LRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAI 600
Query: 425 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 484
L D LKAQEALELMSPGENTNILK +L CGY PDAEPFLSMMLQTFRASKLL+LRT++RI
Sbjct: 601 LHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRI 660
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVVV 543
FIPNGR+MMGCLDE+RTL YGQVFVQ +GAG+R+ + F++SRS FI++G VVV
Sbjct: 661 FIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVV 720
Query: 544 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
AKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD +
Sbjct: 721 AKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQD 780
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIE 630
+IPP+Q PM+Y PA S+QLDHDV IE
Sbjct: 781 MIPPRQVQPMEYPPAPSIQLDHDVTIE 807
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/256 (73%), Positives = 214/256 (83%), Gaps = 3/256 (1%)
Query: 629 IEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPA 688
+++VEEYFTNYIVNDSLGIIANAH VFADREP A S+PC +LAE FSIAVDFPKTGVPA
Sbjct: 906 LQEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPA 965
Query: 689 EIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDP 748
EIP L KEYPDFM+KPDK TY S+ VIGKLFR VKD AP S I +FT++VARRSYD
Sbjct: 966 EIPSQLRPKEYPDFMDKPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDA 1025
Query: 749 DMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEA 808
D+EVDGFED+ID+A +K YD KLGNLMDYYGIKTEAEIL+G IMK SK+F +R+DAEA
Sbjct: 1026 DLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRRKDAEA 1085
Query: 809 IGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSF 868
I +AVRALRKEAR WFK + + DD KASAWYHVTYHP YWGCYNQG+ RDHF+SF
Sbjct: 1086 ISVAVRALRKEARTWFKRR---NDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRDHFISF 1142
Query: 869 PWCVYDRLVEIKKDKT 884
PWCVYD+L++IKK+K
Sbjct: 1143 PWCVYDQLIQIKKEKA 1158
>gi|168044164|ref|XP_001774552.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162674107|gb|EDQ60620.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 843
Score = 827 bits (2136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/841 (50%), Positives = 569/841 (67%), Gaps = 20/841 (2%)
Query: 57 LFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLT 116
+F++N L+Q + G LDS FY L+ P P + + L++L C++P + +
Sbjct: 1 MFQVNQLLQTSKLIGETLDSRFYHLLQPDVTPHEQAKL--VLERLGKRVGPCWDPVKEIQ 58
Query: 117 DQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN 176
++ + S P S +I L G+ +V RV VTP++VY GPE++ SNRV R F D
Sbjct: 59 EELGNMKETLSSPRSVSIKLASGMTWVRRVLVTPTKVYCTGPEVDTSNRVTRQFASHSDR 118
Query: 177 FLRISFIDEDLDKIHSTDLS-PRGSSA---TDITRTRIYTRILSTLRNGILIGDRKFEFL 232
F+R+SF+DE+L+ + S LS PR A D R+ +Y R+L TL+ GI+IGD KFEFL
Sbjct: 119 FMRMSFVDENLEPLSSVALSVPRRGGAQDGVDAERSLLYNRVLKTLKEGIVIGDHKFEFL 178
Query: 233 AFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVH 292
AFSSSQLRE S WMFAS LTA IR WMG+F IRNVAK AAR+GQ FSSSK TL V
Sbjct: 179 AFSSSQLREHSVWMFASYAQLTATMIRAWMGDFLTIRNVAKCAARMGQCFSSSKPTLEVP 238
Query: 293 MDEIEIIPDVKIE--IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYK 350
E+E IPD++ E G +KY FSDGIGK+S EFA++VA + + + PSAFQIRYGGYK
Sbjct: 239 EQEVEQIPDIEREDEFGMSKYCFSDGIGKISKEFAKEVAKRLQM-EVVPSAFQIRYGGYK 297
Query: 351 GVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIF 410
GVVA DP S K+SLR SMRK+ S+ LD+LA S++ P +LNRQ+I LLSTLGI D +F
Sbjct: 298 GVVAVDPHSDFKISLRPSMRKFASKHVGLDILASSRFLPSYLNRQIILLLSTLGIEDSVF 357
Query: 411 EKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTF 470
E+ Q V +L+ +L D A++ L++ GE L ++L GY+P EPF+ M+L+ F
Sbjct: 358 EQMQHRMVSELNDMLKDGDVARDMLQINHAGEMHTRLIDMLAAGYQPQTEPFVKMLLEAF 417
Query: 471 RASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGA-----GYR---QLHGE 522
RAS+L++LR ++RI P GR +MGCLDET++L+YG++F+Q++ A G R +
Sbjct: 418 RASQLVDLRKRSRILEPKGRVLMGCLDETKSLSYGEIFLQVTPALGRRKGLRDGLETFDS 477
Query: 523 SSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPH 582
+ S++ ++V G V+VAKNPCLHPGD+R LKAV+ P L HMVDC+VFPQKG RPH
Sbjct: 478 YPIGSAANQNIAYVVTGWVIVAKNPCLHPGDIRKLKAVDGPGLRHMVDCLVFPQKGHRPH 537
Query: 583 PNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVN 642
PNECSGSDLDGD+YFV WD++LIP D PMDYT +M LDH V IE+++E+F Y+V
Sbjct: 538 PNECSGSDLDGDLYFVSWDEDLIPLNTDEPMDYTSPGAMTLDHHVTIEEIQEFFVKYMVT 597
Query: 643 DSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDF 702
DSLG+I+NAH V AD EP ARS C +LA+ S+AVDFPKTGVPA IP +L +YPDF
Sbjct: 598 DSLGVISNAHVVNADIEPAMARSTACQELAKLVSLAVDFPKTGVPAIIPQNLRPTKYPDF 657
Query: 703 MEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDA 762
MEK DK TY+S+ V+GKLFR VKD + + +E R++DP M + G+E+ ID A
Sbjct: 658 MEKGDKETYKSERVLGKLFRQVKDASLEKLPCEI-PREDIERAFDPVMVITGYEEFIDMA 716
Query: 763 IYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD--AEAIGMAVRALRKEA 820
+HK YD KL LM+ YGI+TEAE ++G ++ +++ + KRR+ E I AVR+L EA
Sbjct: 717 KFHKNEYDRKLIGLMNQYGIETEAEAVSGYMLNLARQYVKRREDVVERIRDAVRSLINEA 776
Query: 821 RAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIK 880
R F E + +DD YAKASAWYHVTYHP++ G H +SFPW +Y+ L++IK
Sbjct: 777 RQRFDENADDMVDDDIYAKASAWYHVTYHPEHIKVSATGRREVHLISFPWVIYNVLLQIK 836
Query: 881 K 881
K
Sbjct: 837 K 837
>gi|4375829|emb|CAA09894.1| RNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 513
Score = 826 bits (2133), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/527 (75%), Positives = 443/527 (84%), Gaps = 14/527 (2%)
Query: 258 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGI 317
IR WMG+F IRNVAKYAARLGQSFSSS+ETL+V DEIE+IPDV+I T+YVFSDGI
Sbjct: 1 IRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGI 60
Query: 318 GKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELT 377
GK+SAEFARKVA KCGL + PSAFQIRYGGYKGVVA DP SSKKLSLR SM K+ESE T
Sbjct: 61 GKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESENT 120
Query: 378 KLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL 437
KLDVLAWSKYQPC++NRQLI+LLSTLG+ D +FEKKQRE V +LDAILT PL+A EAL L
Sbjct: 121 KLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGL 180
Query: 438 MSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLD 497
M+PGENTNILK L++CGYKPDAEPFLSMMLQ FRASKLLELRTKTRIFI GRSMMGCLD
Sbjct: 181 MAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLD 240
Query: 498 ETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 557
ETRTL YGQV VQ S R +RFI+ G VVVAKNPCLH GDVRVL
Sbjct: 241 ETRTLEYGQVVVQYS--------------DPMRPGRRFIITGPVVVAKNPCLHSGDVRVL 286
Query: 558 KAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTP 617
+AVNVPAL+HMVDCVVFPQKG+RPHPNECSGSDLDGDIYFVCWD EL+PP+ PMDYTP
Sbjct: 287 QAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTP 346
Query: 618 AQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSI 677
+ LDHDV IE+VEEYF NYIVNDSLGIIANAHT FAD+EP KA S+PC++LA+KFS
Sbjct: 347 EPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFST 406
Query: 678 AVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLF 737
AVDFPKTGV A IP HLYVKEYPDFMEKPDKPTYES+NVIGKLFR VK+ AP I+ F
Sbjct: 407 AVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSF 466
Query: 738 TKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKT 784
T +VA +SYD DMEVDGFE+++D+A Y K NYD+KLGNLMDYYGIKT
Sbjct: 467 TLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKT 513
>gi|113205403|gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tuberosum]
Length = 1050
Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/577 (70%), Positives = 479/577 (83%), Gaps = 9/577 (1%)
Query: 7 LELPDFKENFAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLLV 64
+ LP+F+E+F +Y E E+ L+TG + S+ LVP V PP+GIA+PY+ILFKI+ LV
Sbjct: 69 VHLPNFQESFFHYAERENNITLQTGFTFFISQKSALVPNVQPPEGIAIPYKILFKISSLV 128
Query: 65 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 124
Q+GC+ GP L+ F+RLVDP R +++CIE AL+KLY+LKECCY+P RWLT+QY Y+
Sbjct: 129 QHGCIPGPSLNVYFFRLVDPQRR--NVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLK 186
Query: 125 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 184
R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+D
Sbjct: 187 GRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVD 246
Query: 185 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 244
E+ +K++ST+L P+ S+ I RT IY RILSTLR G +IGD+KFEFLAFSSSQLR++S
Sbjct: 247 EEWEKLYSTELLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSV 305
Query: 245 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 304
WMFASR GLTA +IR WMG+F +I+NVAKYAARLGQSF SS ETLSV EIE+IPDVK+
Sbjct: 306 WMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSTETLSVLRHEIEVIPDVKV 365
Query: 305 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLS 364
T YVFSDGIGK+SA+FAR+VASKCGL+ P SAFQIRYGGYKGVVA DP SS KLS
Sbjct: 366 H--GTSYVFSDGIGKISADFARRVASKCGLQYTP-SAFQIRYGGYKGVVAVDPYSSMKLS 422
Query: 365 LRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 424
LR SM KYES+ KLDVL WSKYQPCFLNRQLI+LLSTLG+ D+I E+KQ+EAV QLDAI
Sbjct: 423 LRKSMSKYESDNNKLDVLGWSKYQPCFLNRQLITLLSTLGVKDDILEQKQKEAVDQLDAI 482
Query: 425 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 484
L D LKAQEALELMSPGENTNILK +L CGY PDAEPFLSMMLQTFRASKLL+LRTK+RI
Sbjct: 483 LHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRI 542
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVVV 543
FIPNGR+MMGCLDE+RTL YGQVFVQ +GAG+R+ + F++SRS FI++G VVV
Sbjct: 543 FIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVV 602
Query: 544 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 580
AKNPCLHPGD+RVL+AVNVPALHHMVDCVVFPQKG R
Sbjct: 603 AKNPCLHPGDIRVLRAVNVPALHHMVDCVVFPQKGKR 639
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 243/437 (55%), Positives = 293/437 (67%), Gaps = 49/437 (11%)
Query: 477 ELRTKTRIFIPNGRSMMGCL---DETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ 533
++R + +P M+ C+ + + Y ++V+I QL +L+ SR
Sbjct: 612 DIRVLRAVNVPALHHMVDCVVFPQKGKRRLYSNLWVEIIFLLATQLFQLVTLYKCSRLGM 671
Query: 534 RFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDG 593
F CL +V V A +P+ D ++ G PHPNECSGSDLDG
Sbjct: 672 YFY-----------CLPTSEVEVKSAYTLPS----SDSTLWYLTG--PHPNECSGSDLDG 714
Query: 594 DIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIE----------------------- 630
DIYFVCWD ++IPP+Q PM+Y PA S+QLDHDV IE
Sbjct: 715 DIYFVCWDPDMIPPRQVQPMEYPPAPSIQLDHDVTIERGDWPVCATTVQVLRNSFSPVCL 774
Query: 631 --DVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPA 688
+VEEYFTNYIVNDSLGII+NAH VFADREP A S+PC +LAE SIAVDFPKTGVPA
Sbjct: 775 LQEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPA 834
Query: 689 EIPPHLYVKEYPDFMEKP-DKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYD 747
EIP L KEYPDFM+KP DK TY S+ VIGKLFR VKD AP S +FT++VARRSYD
Sbjct: 835 EIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSTAIFTRDVARRSYD 894
Query: 748 PDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAE 807
D+EVDGFED+ID+A +K YD KLGNLM+YYGIKTEAEIL+G IMK SK+F +R+DAE
Sbjct: 895 ADLEVDGFEDYIDEAFDYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKTSKTFDRRKDAE 954
Query: 808 AIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLS 867
AI +AVRALRKEAR WFK ++ DD KASAWYHVTYHP YWGCYNQG+ RDHF+S
Sbjct: 955 AISIAVRALRKEARTWFKRRNDI---DDMLPKASAWYHVTYHPTYWGCYNQGLKRDHFIS 1011
Query: 868 FPWCVYDRLVEIKKDKT 884
FPWCVYD+L++IKK+K
Sbjct: 1012 FPWCVYDQLIQIKKEKA 1028
>gi|326522592|dbj|BAK07758.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 597
Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/597 (63%), Positives = 470/597 (78%), Gaps = 23/597 (3%)
Query: 291 VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYK 350
VH E++ +P+V TKYVFSDGIG +SA+FA +V+ KC L PSAFQIRYGGYK
Sbjct: 2 VHKYEVQALPEVT---NGTKYVFSDGIGTISADFADEVSRKCKLARFTPSAFQIRYGGYK 58
Query: 351 GVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIF 410
GVVA DP S KLSLR SM K+ SE LDVLA+SKYQPCFLNRQLI+LLSTLG+ D IF
Sbjct: 59 GVVAIDPRSHWKLSLRSSMSKFPSENITLDVLAYSKYQPCFLNRQLITLLSTLGVRDNIF 118
Query: 411 EKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTF 470
E KQ+ AV QL+ ++T+P A +A+ELM GE TN++KELL+CGY+PD EP+LSM+LQTF
Sbjct: 119 ELKQQAAVMQLNRLVTEPQAAIDAIELMPMGEITNVVKELLLCGYQPDVEPYLSMILQTF 178
Query: 471 RASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSR 530
RASKLLEL+TK+RIFIP GR+MMGCLDETRTL YG+VF+Q S +S+
Sbjct: 179 RASKLLELKTKSRIFIPEGRAMMGCLDETRTLKYGEVFIQAS--------------NSAN 224
Query: 531 SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSD 590
+F+V G VVVAKNPCLHPGD+R+LKAV P L HMV+CVVFPQ+G RPHPNECSGSD
Sbjct: 225 ESDKFVVTGKVVVAKNPCLHPGDIRILKAVYTPVLDHMVNCVVFPQQGPRPHPNECSGSD 284
Query: 591 LDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIAN 650
LDGDIYFV WD +LIP + PMDYTPA + LDHDV IE+V EYF NYIVN+SLGIIAN
Sbjct: 285 LDGDIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDVVIEEVHEYFANYIVNESLGIIAN 344
Query: 651 AHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPT 710
AH VFAD+E KA S C++LAE FSIAVD+PKTGVPA+IP L+V+EYPDFMEK D+ T
Sbjct: 345 AHVVFADKESLKAESTQCIKLAELFSIAVDYPKTGVPAQIPSELHVREYPDFMEKLDRAT 404
Query: 711 YESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYD 770
Y S+ VIGKL+R +K +PH I FTK+VARRSYD D+ VDG++D+I +A++ KG YD
Sbjct: 405 YISKGVIGKLYREIKKQSPH---IGHFTKDVARRSYDTDLIVDGYQDYITEAVWFKGEYD 461
Query: 771 YKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSG- 829
+KLGNLM++YGIK+EAEI++G I+KM+K+FTK DA+AI +AV++LRKEAR+WF + S
Sbjct: 462 FKLGNLMEHYGIKSEAEIISGCILKMAKNFTKSSDADAIRLAVKSLRKEARSWFSDMSAD 521
Query: 830 --SDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKT 884
D + +YAKASAWYHVTYHP+Y+GCYN+ R H +SFPWCVYD+L+ IK+ K+
Sbjct: 522 ESGDVHEASYAKASAWYHVTYHPEYYGCYNKIYERPHLISFPWCVYDKLLHIKQRKS 578
>gi|302786286|ref|XP_002974914.1| hypothetical protein SELMODRAFT_150191 [Selaginella moellendorffii]
gi|300157073|gb|EFJ23699.1| hypothetical protein SELMODRAFT_150191 [Selaginella moellendorffii]
Length = 834
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/867 (47%), Positives = 564/867 (65%), Gaps = 42/867 (4%)
Query: 26 FVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPY 85
VL G +S VP++ G LP E+ FK+N L+QNG V+ L F+ L+
Sbjct: 1 MVLRRGQPFSVRQLAVPVLSSTCGFDLPLEVEFKVNYLIQNGHVSPAGLTREFFGLLSEN 60
Query: 86 RAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTS---RSKPSSPAISLDDGLVY 142
+S AL L ++ C P+ Q R YM + R + A++ D+ +Y
Sbjct: 61 TPAWCLS----ALSNLERCEKTCLNPA----SQIRNYMRTSNRRRERYLGAVAADESQIY 112
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
V R+ VTP +VYF GPE+ SNRV RHF +DNFLR++F+DED D ++S LS S+
Sbjct: 113 VKRLLVTPLKVYFLGPELEESNRVTRHFSHKLDNFLRVTFVDEDFDSLNSYVLS----SS 168
Query: 203 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM 262
T+T +Y R+L+ LR GI + + F+FLAFS+SQLRE+S WMFA +T IR+WM
Sbjct: 169 RGRTKTEVYYRLLAILRLGIKLCGKDFQFLAFSASQLRENSLWMFADDDEVTGEYIRQWM 228
Query: 263 GNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK-IEIGKTKYVFSDGIGKVS 321
G+F IRNVAK AAR+GQSFS+S TL V E+ + DV+ + KY FSDGIG +S
Sbjct: 229 GDFLSIRNVAKCAARMGQSFSTSTRTLDVPRGEVRQLSDVETFTMDGHKYCFSDGIGTIS 288
Query: 322 AEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDV 381
EFA +VA +C PSAFQIRYGGYKGVVA DP S KLSLR SM K+ SE T LDV
Sbjct: 289 REFATRVARRCR-ASTVPSAFQIRYGGYKGVVAVDPASCFKLSLRPSMSKFPSEQTTLDV 347
Query: 382 LAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPG 441
L ++Y P +LNR++ISLLSTL + D +FE+ Q V LD +L D + L ++ G
Sbjct: 348 LEKTRYIPSYLNREIISLLSTLEVPDGVFERMQAHQVELLDRMLLDSAATYDVLRVLYAG 407
Query: 442 ENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRT 501
E +L +++ G+ P EP++ +LQ FRA++LL L K+RIF+P GR +MGCLDE R
Sbjct: 408 ECHKLLVSMVLAGFSPVTEPYMRSLLQAFRAAQLLSLEKKSRIFVPKGRLLMGCLDEQRV 467
Query: 502 LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 561
L YGQ FVQ+S L ++R+ Q F+V G VVVAKNPCLHPGDV VL+AV+
Sbjct: 468 LRYGQCFVQVS-----------PLQVTARN-QAFVVTGSVVVAKNPCLHPGDVLVLEAVD 515
Query: 562 VPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSM 621
VP LHHMVDC+VFPQ+G RPHPNECSGSDLDGD YFV WD LIPP++ PPM+Y ++
Sbjct: 516 VPELHHMVDCIVFPQQGPRPHPNECSGSDLDGDQYFVSWDSALIPPKRHPPMNYEAPPAV 575
Query: 622 QLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDF 681
+LDH V++E+++E+F N+I +DSLG+IA+AH +D +AR C++LA +S+AVDF
Sbjct: 576 ELDHSVRLEEIQEFFVNWITSDSLGVIAHAHLALSDWSDLQARDPKCMELARLYSVAVDF 635
Query: 682 PKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEV 741
PKTGVPA +PP L ++YPDFMEK +K TY S VIGKL+R++++ T+ L ++
Sbjct: 636 PKTGVPAVMPPELRPEQYPDFMEKRNKRTYISTRVIGKLYRSIRESHRDTNTSPLVSERS 695
Query: 742 ARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFT 801
+ YD + V G++ H+++A + K YD KL +++++Y + +EAEI++GS+ +++ ++
Sbjct: 696 FDQQYDRALVVQGYQSHLEEAKFFKECYDSKLTSILNHYKV-SEAEIMSGSVRSLAR-YS 753
Query: 802 KRRDAEAIG---MAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQ 858
+RR +A+ +A +AL KEAR WF + G TE++A AKA AWYHVTYHP +
Sbjct: 754 RRRQGDAMARVVLAAKALVKEARGWF-DDGGEITENEACAKAFAWYHVTYHP-------E 805
Query: 859 GMNRDHFLSFPWCVYDRLVEIKKDKTS 885
+ LSFPW V D+LV IKK ++
Sbjct: 806 ARKKSDLLSFPWVVSDKLVAIKKRNSA 832
>gi|255540733|ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223550546|gb|EEF52033.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
Length = 983
Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/915 (45%), Positives = 580/915 (63%), Gaps = 34/915 (3%)
Query: 2 ELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKIN 61
E+ LE D ++F YY E+ + +LE G + + ++VP+V LPYEILF++N
Sbjct: 84 EIEEGLEASDIFKSFPYYTEAREEVILEDGEEWGSASEIVPLVKCGSDSKLPYEILFQLN 143
Query: 62 LLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRK 121
LV ++ +D+N + ++I L KL+ L CY+P ++ Q
Sbjct: 144 SLVHTQKISLAAVDTNLITTL----GSLTIDTATMILQKLHKLAVTCYDPLAFIKKQLHV 199
Query: 122 YMTSRSKP--SSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLR 179
+ +P SS ++ ++ HR +TPS++Y GPE+ SN V+++F +F+R
Sbjct: 200 PGRNLKRPFFSSSKNLVNHNIMSCHRALITPSKIYCLGPELESSNYVVKNFASYASDFMR 259
Query: 180 ISFIDEDLDKIHSTDLS---PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSS 236
++F++ED K+ + +S RG A RT IY RILS LR+GI+IG +KFEFLAFS+
Sbjct: 260 VTFVEEDWSKLPANAISMSIQRGIFAKPF-RTGIYHRILSILRDGIVIGAKKFEFLAFSA 318
Query: 237 SQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEI 296
SQLR +S WMFAS A EIREWMG F +I +++K AAR+GQ FSSSK+T V ++
Sbjct: 319 SQLRSNSVWMFASNDKKKAEEIREWMGCFNKIHSISKCAARMGQLFSSSKQTFIVSPQDM 378
Query: 297 EIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAAD 356
EIIPD+++ Y FSDGIGK+S FAR+VA KCGL + PSAFQIRYGGYKGV+A D
Sbjct: 379 EIIPDIEVTSDGINYCFSDGIGKISLSFARQVAQKCGL-NRTPSAFQIRYGGYKGVIAVD 437
Query: 357 PTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQRE 416
S +KLSLRDSM K+ESE L+V WS+ PC+LNR++I+LL+TLG+ DEIFE Q++
Sbjct: 438 RNSFRKLSLRDSMCKFESENRMLNVTKWSESMPCYLNREIITLLTTLGVKDEIFEGLQQQ 497
Query: 417 AVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLL 476
++ L+ +LT+ A LE ++ NIL ++L+ GY+P+ EP+LSMMLQ + + L+
Sbjct: 498 QLQLLNRMLTNRESALNVLENLAWANCKNILIKMLVQGYEPNVEPYLSMMLQAYHENLLV 557
Query: 477 ELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFI 536
ELR++ RIF+P GR ++GCLDETR L+YGQV+V+I+ + + F +
Sbjct: 558 ELRSRCRIFVPKGRILIGCLDETRILDYGQVYVRITMTKAELQDADQASFHRV-DETTAV 616
Query: 537 VQGLVVVAKNPCLHPGDVRVLKAVNVPALHH--MVDCVVFPQKGMRPHPNECSGSDLDGD 594
V G V+V KNPCLHPGD+RVL+AV L +VDC++FPQKG RPHPNECSG DLDGD
Sbjct: 617 VTGKVIVTKNPCLHPGDIRVLEAVYEVELEEKGLVDCILFPQKGERPHPNECSGGDLDGD 676
Query: 595 IYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTV 654
+F+ WD LIP + + PMDY + ++DHDV +E+++++F +Y++ND+LG I+ AH V
Sbjct: 677 QFFISWDKGLIPGETESPMDYQGRRPRKMDHDVTLEEIQKFFIDYMINDTLGAISTAHLV 736
Query: 655 FADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQ 714
ADREP KARS CLQLAE S+AVDF KTG PAE+P L KE+PDFME+ DK Y S
Sbjct: 737 HADREPDKARSSKCLQLAELHSMAVDFAKTGAPAEMPKALKPKEFPDFMERIDKKMYISG 796
Query: 715 NVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLG 774
V+GKL+R D ++T+ +A +YD D+EV GFE+ ++ AI HK Y KL
Sbjct: 797 GVLGKLYRGTLDSTRQQRSKFVWTENIAEATYDHDLEVKGFEEFVEIAISHKDMYVEKLS 856
Query: 775 NLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIG-------MAVRALRKEARAWFKEK 827
LMDYY K E EILTG++ +K+ +RD G ++V++L+KEA+ WF+
Sbjct: 857 GLMDYYEAKKEDEILTGNL--QNKAMYLQRDNRRYGDTKDRILISVKSLQKEAKEWFESC 914
Query: 828 SGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIK--KDKTS 885
+ + ASAWYHVTYHP Y + +G+ LSFPW V D L+ IK K
Sbjct: 915 CQAKEKQRL---ASAWYHVTYHPSY---FQEGIT---CLSFPWIVADILLNIKSANSKNL 965
Query: 886 IGNAFPALEQQFRQG 900
++ P +E ++
Sbjct: 966 KTSSVPCIEDATKEA 980
>gi|224133496|ref|XP_002321582.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222868578|gb|EEF05709.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1110
Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/891 (45%), Positives = 576/891 (64%), Gaps = 36/891 (4%)
Query: 2 ELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKIN 61
E+ LE D NF YY+E +R LE G + + + VP++ L YE+LF++N
Sbjct: 237 EIGEGLEASDTFRNFPYYQEDMNRLDLEDGEEFCSASETVPLIRCGSD-KLAYEVLFQLN 295
Query: 62 LLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRK 121
LV ++ +DS+ +++ +I L KL+ LK CY+P ++ R+
Sbjct: 296 SLVHTQKISLAAVDSDLIKILRNLTVNTAII----ILQKLHKLKMTCYDPLSFVKQSLRE 351
Query: 122 YMTSRSKPSSPAISL-DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRI 180
+ SSP SL ++ ++ HR +TPS+++ GPE SN V++HF + +F+R+
Sbjct: 352 SL------SSPPKSLTENNIMSCHRALITPSKIFCLGPEYETSNYVVKHFAQYASDFIRV 405
Query: 181 SFIDEDLDKIHSTDLSP---RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSS 237
+F++ED K+ + +S RG A RT IY RILS LR+G +IG ++FEFLAFS+S
Sbjct: 406 TFVEEDWSKLPANAISTSIQRGIFAKPF-RTGIYHRILSILRDGFVIGAKRFEFLAFSAS 464
Query: 238 QLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIE 297
QLR +S WMFAS G+ A +IR+WMG F +IR+V+K AAR+GQ FSSS +T V + ++E
Sbjct: 465 QLRSNSVWMFASNNGVKAEDIRKWMGCFDKIRSVSKCAARMGQLFSSSLQTFVVPVQDVE 524
Query: 298 IIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP 357
IIPD+++ Y FSDGIGK+S FA++VA KCGL + PSAFQIRYGGYKGVVA D
Sbjct: 525 IIPDIEVTTDGIDYCFSDGIGKISLSFAKQVAHKCGL-SHTPSAFQIRYGGYKGVVAVDR 583
Query: 358 TSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREA 417
S +KLSLR SM K++SE L+V WS+ PC+LNR++ISLLSTLG+ DEIF+ Q++
Sbjct: 584 NSFRKLSLRSSMLKFDSENRMLNVTKWSESMPCYLNREIISLLSTLGVADEIFQALQQKQ 643
Query: 418 VRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLE 477
+ +L +LT+ A + LE ++ ++ NIL ++L+ GY+P+ EP+LSMMLQ + + L+E
Sbjct: 644 LYRLRKMLTNKESALDVLENLAWADSKNILVQMLLQGYEPNVEPYLSMMLQAYHENSLME 703
Query: 478 LRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIV 537
LR++ RIF+P GR ++GCLDE+ L+YGQV+V+I+ + S F I+
Sbjct: 704 LRSRCRIFVPKGRILIGCLDESGILDYGQVYVRITMTKAELQCCDQSFFRKVDESTSTII 763
Query: 538 QGLVVVAKNPCLHPGDVRVLKAVNVPALHH--MVDCVVFPQKGMRPHPNECSGSDLDGDI 595
G V V KNPCLHPGD+RVL+AV L +VDC++FPQ G RPHPNECSG DLDGD
Sbjct: 764 -GEVAVTKNPCLHPGDIRVLEAVYDVELEEKGLVDCIIFPQNGGRPHPNECSGGDLDGDQ 822
Query: 596 YFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVF 655
+F+ WD+ L+P + PMDY + +DH+V +E+++ +F +Y++ND+LG I+ AH V
Sbjct: 823 FFISWDEGLLPCHTEAPMDYVGGRQRIMDHNVTLEEIQRFFVDYMINDTLGAISTAHLVH 882
Query: 656 ADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQN 715
AD EP KARSE CLQLA S+AVDF KTG PAE+P +L +E+PDFME+ +K Y S
Sbjct: 883 ADCEPDKARSEKCLQLATLHSMAVDFAKTGAPAEMPLYLKPREFPDFMERAEKQMYISDG 942
Query: 716 VIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGN 775
V+GKL+R + D +++K++A +YD D+EV GFED + A +K Y K+
Sbjct: 943 VLGKLYRDIHDSTRQERSNFMWSKKIAEATYDQDLEVKGFEDFLGIASIYKEKYMEKMST 1002
Query: 776 LMDYYGIKTEAEILTGSIMKMSKSFTKRRD------AEAIGMAVRALRKEARAWFKEKSG 829
LMDYYG KTE EILTG+ ++ ++ +R + + I ++++ L+KEA+ WF E S
Sbjct: 1003 LMDYYGAKTEDEILTGN-LRHRPTYLQRDNRKYGDVKDRILVSLKNLKKEAKEWF-ESSC 1060
Query: 830 SDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIK 880
+ TE ASAWYHVTYHP Y +++ MN LSFPW V D L+ IK
Sbjct: 1061 NPTEHQCM--ASAWYHVTYHPTY---FHERMN---CLSFPWIVGDILLNIK 1103
>gi|242073398|ref|XP_002446635.1| hypothetical protein SORBIDRAFT_06g019330 [Sorghum bicolor]
gi|241937818|gb|EES10963.1| hypothetical protein SORBIDRAFT_06g019330 [Sorghum bicolor]
Length = 1128
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/893 (44%), Positives = 571/893 (63%), Gaps = 37/893 (4%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKI 60
++L + + D E+ + E E+ + + A+ S ++VP+V P+G ++PYE+LF++
Sbjct: 239 LKLSKGVPVSDILESLPFSGELEE-LAISSMLAFGSSSNVVPLVDCPNGFSVPYEVLFRL 297
Query: 61 NLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR 120
N LV G + ++++ +++++ +SI + +K+ LK CYEP +++ ++
Sbjct: 298 NSLVHMGKLVARHVNADLFKVLEE----LSIDTLRRIFEKMSKLKSTCYEPLQFI--RHE 351
Query: 121 KYMTSRSKPSSPAISLDDG-LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLR 179
+ S+SK + + D G L+ +R+ +TPS++Y GPE VSN V+++ +F R
Sbjct: 352 AHSMSKSKKAFLSNKKDGGKLMRCYRIHITPSKIYCLGPEEEVSNYVVKYHSEYASDFAR 411
Query: 180 ISFIDEDLDKIHSTDLSPRGSSATDIT--RTRIYTRILSTLRNGILIGDRKFEFLAFSSS 237
++F+DED K+ LS R T +T +Y RILS L+ G IG +K+EFLAFS+S
Sbjct: 412 VTFVDEDWSKLSPNALSARTEQGFFSTPLKTGLYHRILSILKEGFCIGPKKYEFLAFSAS 471
Query: 238 QLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIE 297
QLR +S WMFAS LTA IR WMG+F +IR+V+K AAR+GQ FSSS++T + ++E
Sbjct: 472 QLRGNSVWMFASNNSLTAESIRRWMGHFEDIRSVSKCAARMGQLFSSSRQTFEISSYDVE 531
Query: 298 IIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK-DNPPSAFQIRYGGYKGVVAAD 356
+IPD+++ TKY+FSDGIGK+S FAR++A GL +PPSAFQIRYGGYKGV+ D
Sbjct: 532 VIPDIEVTSDGTKYIFSDGIGKISTRFARQIAKLFGLDPAHPPSAFQIRYGGYKGVITID 591
Query: 357 PTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQRE 416
PTS LSLR SM+K+ES+ T L++ WSK QPC++NR++ISLLSTLGI DE+FE Q++
Sbjct: 592 PTSFFNLSLRPSMKKFESKSTMLNITNWSKSQPCYVNREIISLLSTLGIKDEVFESMQQD 651
Query: 417 AVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLL 476
+ + D +LT+ A L + G +T E+++ GY+P +EP+L M+L+ RA++L
Sbjct: 652 DMHESDGMLTNKEAALSVLGKIG-GADTKTASEMVLQGYEPSSEPYLLMILKAHRANRLT 710
Query: 477 ELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFI 536
++RT+ +I + GR ++GCLDET TL+YGQV+++I+ Q + E F + + I
Sbjct: 711 DIRTRCKIHVQKGRVLIGCLDETCTLDYGQVYIRITKNRKEQKYSEQPFFCNDDGKTAVI 770
Query: 537 VQGLVVVAKNPCLHPGDVRVLKAVNVPAL--HHMVDCVVFPQKGMRPHPNECSGSDLDGD 594
V G V V KNPCLHPGDVRVL+AV PAL ++DCVVFPQ+G RPHPNECSG DLDGD
Sbjct: 771 V-GKVAVTKNPCLHPGDVRVLEAVYDPALDARGLIDCVVFPQRGERPHPNECSGGDLDGD 829
Query: 595 IYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTV 654
++F+ WDD+LIP + D PMDYT + +DH V +E+++++F NY++ND+LG+I+ AH +
Sbjct: 830 LFFITWDDKLIPEKVDAPMDYTATRPRIMDHAVTLEEIQKHFVNYMINDALGVISTAHLI 889
Query: 655 FADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQ 714
ADR P KARS CLQLA S+AVDF KTG PAE+P L +E+PDFME+ ++P Y S
Sbjct: 890 HADRNPLKARSPECLQLAALHSMAVDFAKTGAPAEMPVALRPREFPDFMERWERPMYVST 949
Query: 715 NVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLG 774
+V+GKL+RA + + L R YDPD+EV GF+ +D A Y KLG
Sbjct: 950 SVLGKLYRAA--LRHEENAEALLPAGPPRCVYDPDLEVAGFDKFLDTAEEQYEVYAEKLG 1007
Query: 775 NLMDYYGIKTEAEILTGSIMKMSKSFTKRRD-------AEAIGMAVRALRKEARAWFKEK 827
LM YY + E EILTG+I +K RRD + I AV AL E R W + +
Sbjct: 1008 TLMTYYSAEHEDEILTGNI--RNKLVYLRRDNKRYFEMKDRIIAAVDALHAEVRGWLRAR 1065
Query: 828 SGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIK 880
EDDA ASAWYHVTYHPD G F SFPW D L+ IK
Sbjct: 1066 K----EDDASKLASAWYHVTYHPDRRG-------EKRFWSFPWVACDTLLAIK 1107
>gi|225457089|ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
gi|297733815|emb|CBI15062.3| unnamed protein product [Vitis vinifera]
Length = 1127
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/883 (45%), Positives = 560/883 (63%), Gaps = 31/883 (3%)
Query: 11 DFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVA 70
D +F YYK+ + LE G + LVP+V G L YEILF++N LV ++
Sbjct: 244 DIFASFPYYKDLTE-LTLEQGEGFCSDSGLVPLVKCESGPKLAYEILFQLNSLVHAQKIS 302
Query: 71 GPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR--KYMTSRSK 128
+D++ ++ PV + + L KL+ K Y+P ++ Q
Sbjct: 303 LAAVDTDLIEILS--NLPVDTAIM--ILQKLHKRKSTRYDPISFIKAQAHIINMNIKNLP 358
Query: 129 PSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD 188
PSS + ++ ++ HRV VTPS++Y GPE+ SN V++H+ +F+R+SF++ED
Sbjct: 359 PSSHSRLTNNNVMSCHRVLVTPSKIYCLGPELESSNYVVKHYAAYASDFVRVSFVEEDWS 418
Query: 189 KIHSTDLSP--RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM 246
K+ S LS R + D RT IY RILS LR GI+IG ++F+FLAFS+SQLR +S WM
Sbjct: 419 KLPSNALSMSIRKAFFADPFRTEIYHRILSILREGIVIGAKRFQFLAFSASQLRSNSVWM 478
Query: 247 FASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEI 306
FAS + +IREWMG F++IR+V+K AAR+GQ FSSS +TL V + ++E+IPD+++
Sbjct: 479 FASNDKVRVDDIREWMGCFKKIRSVSKCAARMGQLFSSSVQTLPVPVQDVEVIPDIEVTS 538
Query: 307 GKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLR 366
Y FSDGIGK+S FA++VA KCGL P SAFQIRYGGYKGV+A D S +KLSLR
Sbjct: 539 DGFGYCFSDGIGKISLSFAKQVAQKCGLHQTP-SAFQIRYGGYKGVIAVDRNSFRKLSLR 597
Query: 367 DSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT 426
SM K+ES+ L+V WS+ PC+LNR+++SLLSTLG+ DE FE E + LD +LT
Sbjct: 598 SSMLKFESQNRMLNVTKWSESTPCYLNREIVSLLSTLGVEDENFEALLNEQMHLLDKMLT 657
Query: 427 DPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 486
+ A + LE M +N NIL ++L+ GY+P+ EP+LSMMLQ +R S+L ++RT+ RIF+
Sbjct: 658 NRQAALDVLESMGGIDNKNILAKMLLQGYEPNVEPYLSMMLQAYRESQLSDIRTRCRIFV 717
Query: 487 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 546
P R ++GCLDET LNYGQV+V+++ S F ++ G V+V KN
Sbjct: 718 PKARVLIGCLDETGILNYGQVYVRVTMTKAEHKCRNQSFFQKVDDTTSVVI-GKVIVTKN 776
Query: 547 PCLHPGDVRVLKAVNVPALHH--MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDEL 604
PCLHPGD+RVL AV L +VDC++FPQKG RPHPNECSG DLDGD +F+CWD+ L
Sbjct: 777 PCLHPGDIRVLDAVYEVELEEKGLVDCILFPQKGERPHPNECSGGDLDGDQFFICWDEGL 836
Query: 605 IPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKAR 664
IP Q + PMDYT + +DHDV +E+++++F +Y++ND+LG+I+ AH V ADREP KAR
Sbjct: 837 IPSQTEAPMDYTSRRPRIMDHDVTLEEIQKFFVDYMINDTLGVISTAHLVHADREPEKAR 896
Query: 665 SEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAV 724
S+ CL+LA S+AVDF KTG PAE+P L KE+PDFME+ DKP Y S +GKL+RA
Sbjct: 897 SKKCLELATLHSMAVDFAKTGAPAEMPRVLKPKEFPDFMERVDKPMYISNGALGKLYRAT 956
Query: 725 KDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKT 784
+ +++ + +YD D+EVDGFE ++ A HK Y K+ LM++YG ++
Sbjct: 957 IASRVNEKSSFVWSGTIPGAAYDHDLEVDGFETFLEIAKLHKEMYAEKMATLMNFYGAES 1016
Query: 785 EAEILTGS-------IMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAY 837
E E+LTG+ + + ++ FT+ +D I ++V++L+KEA+ W GS
Sbjct: 1017 EDEMLTGNLRNKLMYLQRDNRRFTEMKD--RILISVKSLQKEAKEWL---YGSCKPHQHQ 1071
Query: 838 AKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIK 880
ASAWYHVTYH + +FLSFPW V + L+ IK
Sbjct: 1072 KMASAWYHVTYHSTF------SSQTPNFLSFPWIVGEVLLVIK 1108
>gi|449518949|ref|XP_004166498.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
Length = 1117
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/898 (45%), Positives = 569/898 (63%), Gaps = 43/898 (4%)
Query: 2 ELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKIN 61
E+ L+ D F +YKE++ VLE G + + ++VP++ G L YE+ +++N
Sbjct: 235 EVEEDLQASDIFSCFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLN 294
Query: 62 LLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRK 121
LV ++ L + L+D + + I + L +L+ LK CY+P +L Q
Sbjct: 295 SLVHMQKIS---LSAANQDLID-FLCTLDIDTALNVLQRLHQLKFVCYDPLSFLKTQLHV 350
Query: 122 YM-TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRI 180
Y +S P S L + ++ +RV VTPSR+Y GPE+ SN V+++F +F+R+
Sbjct: 351 YKRNCKSLPPSSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRV 410
Query: 181 SFIDEDLDKIHSTDLSPRGSSATDITR--------TRIYTRILSTLRNGILIGDRKFEFL 232
+F++ED K+ P G+ T I R T IY RI++ LR+GI+IG ++FEFL
Sbjct: 411 TFVEEDWSKL------PAGAVTTSIQRGILSKPYRTEIYHRIMTVLRDGIVIGAKRFEFL 464
Query: 233 AFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVH 292
AFS+SQLR +S WMFAS L A EIR+WMG F +IR+++K AAR+GQ FSSS +TL V
Sbjct: 465 AFSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVP 524
Query: 293 MDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV 352
++EIIPD+++ Y FSDGIGK+S FAR+VA KCG+ ++ PSAFQIRYGGYKGV
Sbjct: 525 TRDVEIIPDIEVNTDGIDYCFSDGIGKISLSFARQVADKCGV-NHIPSAFQIRYGGYKGV 583
Query: 353 VAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEK 412
+A D S +KLSLRDSM K+ES+ L+V PC+LNR++ +LLSTLG+ DE FE
Sbjct: 584 IAVDRNSFRKLSLRDSMLKFESKNKMLNVTKCCDSMPCYLNREIATLLSTLGVKDESFEA 643
Query: 413 KQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRA 472
Q+E + L +LTD A LE ++ NIL ++L GY+P+ EP+LSMMLQ
Sbjct: 644 LQQEQLHLLKRMLTDKDVALNVLENFHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYW 703
Query: 473 SKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSR 532
+ +LR++ RIF+P GR ++GCLDET LNYGQV+ I+ +L + + +
Sbjct: 704 NLFSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTK-SELQNRNQNYFHTIDE 762
Query: 533 QRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH--MVDCVVFPQKGMRPHPNECSGSD 590
+ I+ G VVV KNPCLHPGDVRVL+A+ L +VDC++FPQKG RPH NECSG D
Sbjct: 763 TKSILLGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGARPHTNECSGGD 822
Query: 591 LDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIAN 650
LDGD+YF+ WD+ LIPP+ + PMDYT + +DHDV++E+++++F +Y++ND+LG I+
Sbjct: 823 LDGDLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVKLEEIQKFFVDYMINDTLGAIST 882
Query: 651 AHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPT 710
AH V ADREP+KA S CL+LA S+AVDF KTG PAE+P L +E+PDFME+ DKP
Sbjct: 883 AHLVHADREPKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPM 942
Query: 711 YESQNVIGKLFR-AVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNY 769
Y S NV+GKL+R AVK I S + ++++E AR YD D+EVDGFE ++ A +K Y
Sbjct: 943 YISSNVLGKLYRAAVKSIEQERSRL-VWSEEAARAIYDYDLEVDGFEAFLEIAETYKEMY 1001
Query: 770 DYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIG-------MAVRALRKEARA 822
K+ LM+YYG + E EIL G + S++ +RD G ++V+ LRKE +
Sbjct: 1002 IEKMSILMNYYGAEYEDEILMGDL--RSRASYLQRDNRKYGDMKDRILLSVKNLRKEVKE 1059
Query: 823 WFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIK 880
WF+ S + ASAWYHVTYHP Y + + M +LSFPW V D L+ IK
Sbjct: 1060 WFE---NSCDPLNRRMMASAWYHVTYHPSY---FKEDM---FYLSFPWAVSDVLLNIK 1108
>gi|449440690|ref|XP_004138117.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase 2 [Cucumis sativus]
Length = 1117
Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/898 (45%), Positives = 568/898 (63%), Gaps = 43/898 (4%)
Query: 2 ELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKIN 61
E+ L+ D F +YKE++ VLE G + + ++VP++ G L YE+ +++N
Sbjct: 235 EVEEDLQASDIFSCFPFYKETQKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLN 294
Query: 62 LLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRK 121
LV ++ L + L+D + + I + L +L+ LK CY+P +L Q
Sbjct: 295 SLVHMQKIS---LSAANQDLID-FLCTLDIDTALNVLQRLHQLKFVCYDPLSFLKTQLHV 350
Query: 122 YM-TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRI 180
Y +S P S L + ++ +RV VTPSR+Y GPE+ SN V+++F +F+R+
Sbjct: 351 YKRNCKSLPPSSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRV 410
Query: 181 SFIDEDLDKIHSTDLSPRGSSATDITR--------TRIYTRILSTLRNGILIGDRKFEFL 232
+F++ED K+ P G+ T I R T IY RI++ LR+GI+IG ++FEFL
Sbjct: 411 TFVEEDWSKL------PAGAVTTSIQRGILSKPYRTEIYHRIMTVLRDGIVIGAKRFEFL 464
Query: 233 AFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVH 292
AFS+SQLR +S WMFAS L A EIR+WMG F +IR+++K AAR+GQ FSSS +TL V
Sbjct: 465 AFSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVP 524
Query: 293 MDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV 352
++EIIPD+++ Y FSDGIGK+S FAR+VA KCG+ ++ PSAFQIRYGGYKGV
Sbjct: 525 TRDVEIIPDIEVNTDGIDYCFSDGIGKISLSFARQVADKCGV-NHIPSAFQIRYGGYKGV 583
Query: 353 VAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEK 412
+A D S +KLSLRDSM K+ES+ L+V PC+LNR++ +LLSTLG+ DE FE
Sbjct: 584 IAVDRNSFRKLSLRDSMLKFESKNKMLNVTKCCDSMPCYLNREIATLLSTLGVKDESFEA 643
Query: 413 KQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRA 472
Q+E + L +LTD A LE ++ NIL ++L GY+P+ EP+LSMMLQ
Sbjct: 644 LQQEQLHLLKRMLTDKDVALNVLENFHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYW 703
Query: 473 SKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSR 532
+ +LR++ RIF+P GR ++GCLDET LNYGQV+ I+ +L + + +
Sbjct: 704 NLFSDLRSRCRIFVPKGRILLGCLDETGILNYGQVYACITLTK-SELQSRNQNYFHTIDE 762
Query: 533 QRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH--MVDCVVFPQKGMRPHPNECSGSD 590
+ I+ G VVV KNPCLHPGDVRVL+A+ L +VDC++FPQKG RPH NECSG D
Sbjct: 763 TKSILLGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGARPHTNECSGGD 822
Query: 591 LDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIAN 650
LDGD+YF+ WD+ LIPP+ + PMDYT + +DHDV++E+++++F +Y++ND+LG I+
Sbjct: 823 LDGDLYFISWDENLIPPKTEAPMDYTGRRPRIMDHDVKLEEIQKFFVDYMINDTLGAIST 882
Query: 651 AHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPT 710
AH V ADREP+KA S CL+LA S+AVDF KTG PAE+P L +E+PDFME+ DKP
Sbjct: 883 AHLVHADREPKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPM 942
Query: 711 YESQNVIGKLFR-AVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNY 769
Y S NV+GKL+R AVK I S + ++++E AR YD D+EVDGFE ++ A +K Y
Sbjct: 943 YISSNVLGKLYRAAVKSIEQERSRL-VWSEEAARAIYDYDLEVDGFEAFLEIAETYKEMY 1001
Query: 770 DYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIG-------MAVRALRKEARA 822
K+ LM+YYG + E EIL G + S++ +RD G ++V+ LRKE +
Sbjct: 1002 IEKMSILMNYYGAEYEDEILMGDL--RSRASYLQRDNRKYGDMKDRILLSVKNLRKEVKE 1059
Query: 823 WFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIK 880
WF+ S + ASAWYHVTYHP Y + + M + SFPW V D L+ IK
Sbjct: 1060 WFE---NSCDPLNRRMMASAWYHVTYHPSY---FKEDM---FYFSFPWAVSDVLLNIK 1108
>gi|357164043|ref|XP_003579930.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Brachypodium
distachyon]
Length = 1140
Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/857 (45%), Positives = 560/857 (65%), Gaps = 32/857 (3%)
Query: 41 VPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDK 100
VP+V P G ++ YE+LF++N LV G + +++ + ++ + P+ IS +K
Sbjct: 278 VPLVDCPHGCSVSYEVLFRLNSLVHMGKIVAKHVNAKLFAFLE--QVPLHIS--RRIFEK 333
Query: 101 LYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEI 160
+ L+ CYEP +++ + + +T + SS + L+ +R+ +TPS++Y GPE
Sbjct: 334 MSKLESTCYEPLQFIESELK--LTHNALLSSKREG-EGKLMRCYRIHITPSKIYCLGPEE 390
Query: 161 NVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA--TDITRTRIYTRILSTL 218
SN V++H +F+R++F+DED K+ +S R + +T +Y RILS L
Sbjct: 391 EASNYVVKHHSEYASDFVRVTFVDEDWSKLSVNAISARIEQGFFSQPFKTGLYYRILSIL 450
Query: 219 RNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARL 278
+ G +IG +KFEFLAFS+SQLRE S WMFAS L A IR WMG+F EIR+V+K AAR+
Sbjct: 451 KEGFIIGPKKFEFLAFSASQLREGSVWMFASNDSLNAESIRRWMGHFEEIRSVSKCAARM 510
Query: 279 GQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL-KDN 337
GQ FSSS++T+ V ++E IPD+++ TKY+FSDGIGK+S FAR++A + GL N
Sbjct: 511 GQLFSSSRQTVEVRPWDVEEIPDIEVTTNNTKYIFSDGIGKMSVRFAREIAYRIGLDHTN 570
Query: 338 PPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLI 397
PPSAFQIR+GGYKGV+A DP+S + LSLR SMRK+ES+ L++ +WSK QPC++NR++I
Sbjct: 571 PPSAFQIRFGGYKGVIAVDPSSFRNLSLRPSMRKFESDCRMLNITSWSKSQPCYVNREII 630
Query: 398 SLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKP 457
SLLSTLGI DE+FE Q++ +R+LD +LT+ A L + E T ++L+ GY+P
Sbjct: 631 SLLSTLGIRDEVFELMQQDDMRELDEMLTNKEVALSVLGKIGSAE-TKTAADMLLQGYEP 689
Query: 458 DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR 517
+EP+L M+L+ + ++L ++R+K +I +P GR ++GCLDET L YGQV+++I+
Sbjct: 690 ISEPYLLMILKAHQDNRLTDIRSKFKIHVPKGRVLLGCLDETGKLKYGQVYIRITKNNKE 749
Query: 518 QLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH--HMVDCVVFP 575
Q E FS + +V G V V+KNPCLHPGDVRVL+AV P LH +VDCVVFP
Sbjct: 750 QKENEQPYFSEDDGKTVTLV-GKVAVSKNPCLHPGDVRVLEAVYDPGLHAKKLVDCVVFP 808
Query: 576 QKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEY 635
Q+G RPHPNECSG DLDGD+YFV WDD+LIP + D PMDYT A+ +DH V +E+++++
Sbjct: 809 QRGERPHPNECSGGDLDGDLYFVTWDDKLIPEKADAPMDYTGARPRIMDHVVTLEEIQQH 868
Query: 636 FTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLY 695
NY+++DSLG I+NAH + ADR+P KARS CLQLA S+AVDF KTG PAE+P L
Sbjct: 869 VVNYMLSDSLGAISNAHLIHADRDPMKARSPECLQLAALHSMAVDFAKTGAPAELPRSLR 928
Query: 696 VKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGF 755
+E+PDFME+ DKP Y S V+GKL+RA ++ S L ++ + +YD ++ V GF
Sbjct: 929 PREFPDFMERWDKPMYISNGVLGKLYRAA--VSRMESSHALASQVQSSPTYDRELAVPGF 986
Query: 756 EDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSI-------MKMSKSFTKRRDAEA 808
E+ ++DA H Y KL LM+YYG + E EILTG+I K K ++ +D
Sbjct: 987 EEFLEDAEKHYDLYVEKLTTLMNYYGAEHEDEILTGNIRNRLLYLRKDRKRYSDMKD--R 1044
Query: 809 IGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSF 868
I +V AL +E R WF K+ E++A ASAWY V YHPD+ + + F SF
Sbjct: 1045 IFDSVNALHEEVRGWF--KNCLKAEEEASRVASAWYRVAYHPDH-----RRPEKKQFWSF 1097
Query: 869 PWCVYDRLVEIKKDKTS 885
PW + D+L+ IK K++
Sbjct: 1098 PWIICDKLLAIKATKSN 1114
>gi|308080784|ref|NP_001183867.1| uncharacterized protein LOC100502460 [Zea mays]
gi|89473792|gb|ABD72708.1| RNA-dependent RNA polymerase [Zea mays]
gi|374257933|gb|AEZ01781.1| RNA-dependent DNA polymerase [Zea mays]
gi|414586834|tpg|DAA37405.1| TPA: mediator of paramutation1 [Zea mays]
Length = 1127
Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/859 (45%), Positives = 546/859 (63%), Gaps = 35/859 (4%)
Query: 34 YSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISC 93
+ S ++VP+V P+G ++PYE+LF++N LV G + ++++ +++++ +SI
Sbjct: 271 FGSSSNVVPLVDCPNGFSVPYEVLFRLNSLVHMGKLVARHVNADLFKVLED----LSIDT 326
Query: 94 IEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRV 153
+ +K+ LK CYEP +++ + M R K S L+ +R+ +TPS++
Sbjct: 327 LRRIFEKMSKLKSTCYEPLQFIRHEAHS-MNMRKKALSNKRE-SGKLMRCYRIHITPSKI 384
Query: 154 YFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA--TDITRTRIY 211
Y GPE VSN V+++ +F R++F+DED K+ LS R + +T +Y
Sbjct: 385 YCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALSARTEQGFFSKPLKTGLY 444
Query: 212 TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNV 271
RILS L+ G IG +K+EFLAFS+SQLR +S WMFAS LTA IR WMG+F +IR+V
Sbjct: 445 HRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNSSLTAENIRRWMGHFEDIRSV 504
Query: 272 AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASK 331
+K AAR+GQ FSSS++T V ++E+IPD+++ TKY+FSDGIGK+S FAR+VA
Sbjct: 505 SKCAARMGQLFSSSRQTFEVSSYDVEVIPDIEVTTDGTKYIFSDGIGKISTRFARQVAKL 564
Query: 332 CGLK-DNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPC 390
GL +PPSAFQIRYGGYKGV+ DPTS LSLR SM+K+ES+ T L++ WSK QPC
Sbjct: 565 IGLDPAHPPSAFQIRYGGYKGVITIDPTSFFNLSLRPSMKKFESKSTMLNITNWSKSQPC 624
Query: 391 FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKEL 450
++NR++ISLLSTLGI DE+FE Q++ + + D +LT+ A L + G +T ++
Sbjct: 625 YVNREIISLLSTLGIKDEVFESMQQDDMHESDGMLTNKEAALSVLGKIG-GGDTKTAADM 683
Query: 451 LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQ 510
L+ GY+P +EP+L M+L+ RA++L ++RT+ +I + GR ++GCLDET L YGQV+++
Sbjct: 684 LLQGYEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQKGRVLIGCLDETCKLEYGQVYIR 743
Query: 511 ISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL--HHM 568
I+ Q + E F + + IV G V + KNPCLHPGDVRVL+AV P L +
Sbjct: 744 ITKNHKEQKYSEQPFFCNDDGKTAVIV-GKVAITKNPCLHPGDVRVLEAVYDPGLDARGL 802
Query: 569 VDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQ 628
+DCVVFPQ+G RPHPNECSG DLDGD++F+ WDD+LIP + D PMDYT + +DH V
Sbjct: 803 IDCVVFPQRGERPHPNECSGGDLDGDLFFITWDDKLIPEKVDAPMDYTATRPRIMDHAVT 862
Query: 629 IEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPA 688
+E+++++F +Y++ND+LG I+ AH + ADR+P KARS C+QLA S+AVDF KTG PA
Sbjct: 863 LEEIQKHFVSYMINDTLGAISTAHLIHADRDPLKARSPECVQLAALHSMAVDFAKTGAPA 922
Query: 689 EIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDP 748
E+P L +E+PDFME+ ++P Y S V+GKL+RA + L YDP
Sbjct: 923 EMPLALRPREFPDFMERWERPMYVSNGVLGKLYRAA--LRHEEDAEALLPAGPPSCVYDP 980
Query: 749 DMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD--- 805
D+EV GF++ +D A Y +LG LM YY + E EILTG+I +K RRD
Sbjct: 981 DLEVAGFDEFLDAAEERYEAYAERLGALMTYYSAEREDEILTGNI--RNKLVYLRRDNKR 1038
Query: 806 ----AEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMN 861
+ I AV AL E R W + + EDDA ASAWYHVTYHPD G
Sbjct: 1039 YFEMKDRIIAAVDALHAEVRGWLR----ACKEDDASRVASAWYHVTYHPDRRG------- 1087
Query: 862 RDHFLSFPWCVYDRLVEIK 880
F SFPW + D L+ IK
Sbjct: 1088 EKRFWSFPWIICDTLLAIK 1106
>gi|357477317|ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase [Medicago truncatula]
Length = 1308
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/884 (43%), Positives = 558/884 (63%), Gaps = 29/884 (3%)
Query: 11 DFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVA 70
D +F Y+E+ LE G + + VP+V LPYE LF++N LV ++
Sbjct: 247 DVFRSFPLYRENLKDLSLEDGEKFCSPTETVPLVKCRLDSKLPYESLFQLNSLVHTQKIS 306
Query: 71 GPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSK-- 128
++ L+ A + KL+ + CYEP +++ Q +
Sbjct: 307 LASVNDELIDLLASLDAETKAVIFQ----KLHKMNSTCYEPLKYVRTQLHVLSIKKKSVL 362
Query: 129 PSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD 188
PS +D+ ++ HR +TPS++Y GPE+ SN V++HF +F+RI+F++ED
Sbjct: 363 PSQQKRLVDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAAYASDFMRITFVEEDWS 422
Query: 189 KI--HSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM 246
K+ ++ ++ + + RT IY R+L+ LR+GILIG ++FEFLAFS+SQLR +S W+
Sbjct: 423 KLPNNAISITLKKGMFSRPLRTEIYKRVLNILRDGILIGSKRFEFLAFSASQLRSNSVWL 482
Query: 247 FASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEI 306
FAS + AA+IREWMG+F IR+V+K AAR+GQ FSSS++T + ++++IPD++I
Sbjct: 483 FASNDKVKAADIREWMGSFNNIRSVSKCAARMGQLFSSSRQTFEMAPQDVDLIPDIEITS 542
Query: 307 GKTKYVFSDGIGKVSAEFARKVASKCGLKDNP-PSAFQIRYGGYKGVVAADPTSSKKLSL 365
Y FSDGIGK+S FAR++A K L +N PSAFQIRYGGYKGV+A D S KKLSL
Sbjct: 543 DGIDYCFSDGIGKISQSFARQLAEKLKLDENRIPSAFQIRYGGYKGVIAVDRHSFKKLSL 602
Query: 366 RDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL 425
R SM K+ES+ L V WS+ PCFLNR++ISLLSTLGI DE Q + ++ L +L
Sbjct: 603 RKSMLKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGIKDEALLALQEDQLQLLGKML 662
Query: 426 TDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 485
TD A + LE ++ ++ +IL ++L Y+P++EP+LSMML+ +L +L+++ RIF
Sbjct: 663 TDKEAALDVLESLNGADSNSILVKMLHRFYEPNSEPYLSMMLKAHYTYQLSDLKSRCRIF 722
Query: 486 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 545
+P GR ++GCLDET LNYGQVFV+I+ A ++ G+ +L + I+ G VVV K
Sbjct: 723 VPKGRVLIGCLDETGLLNYGQVFVRITVAKTKEKFGDENLRNVDGDDSTRIIVGKVVVTK 782
Query: 546 NPCLHPGDVRVLKAVNVPALHH--MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
NPCLHPGD+RVL AV L + DC+VFPQKG RPHPNECSG DLDGD++F+ WD +
Sbjct: 783 NPCLHPGDIRVLDAVYSEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKD 842
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
LIP Q + PMDYT + +DH V +E++ ++F +Y++ND+LG I+ AH V ADRE KA
Sbjct: 843 LIPAQTENPMDYTGRRPRIMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREHDKA 902
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRA 723
+S CL+LAE S+AVDF KTG PAE+P L +E+PDFME+ +KP Y S+ V+GKL+RA
Sbjct: 903 KSRKCLELAELHSMAVDFAKTGAPAEMPRSLKPREFPDFMERFEKPMYISKGVLGKLYRA 962
Query: 724 VKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIK 783
D + +++ A+ +YD +EVDGFE ++ A+ H+ Y K+ +LM +YG
Sbjct: 963 TIDSNLQVRFDMVMSEKFAKEAYDHQLEVDGFEVFLETALSHRDMYAQKMISLMSFYGAT 1022
Query: 784 TEAEILTGSIMKMSKSFTKRRD------AEAIGMAVRALRKEARAWFKEKSGSDTEDDAY 837
TE E+LTG++ + S+ +R + + I ++V+ L+ EA+ WF+ SD + Y
Sbjct: 1023 TEDEMLTGNLQNRA-SYLQRDNRRYGDMKDRILISVKDLQLEAKEWFE----SDCQPHEY 1077
Query: 838 A-KASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIK 880
ASAWYHVTYHP Y+ + FLSFPW V D L+ IK
Sbjct: 1078 QLMASAWYHVTYHPKYY------IESSTFLSFPWIVGDILLHIK 1115
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 70/102 (68%)
Query: 623 LDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFP 682
L H + ++F +Y++ D+LG I+ AH V AD E KA+S CL+LAE S+AVDF
Sbjct: 1111 LLHIKSANKIHKFFVDYMIKDTLGAISTAHLVHADCESNKAKSRKCLELAELHSMAVDFA 1170
Query: 683 KTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAV 724
KTG AE+P L KE+PDFME+ +KP Y S+ V+GKL+RA+
Sbjct: 1171 KTGALAEMPRVLKPKEFPDFMERFEKPMYVSKGVLGKLYRAL 1212
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 16/103 (15%)
Query: 789 LTGSIMKMSKSFTKR-----RDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYA-KASA 842
L S M+++ +F + I + + L+ E + WF+ SD + + ASA
Sbjct: 1212 LVESTMQLTSNFVSSGNFLSKKHMIINLKLMDLQLEVKEWFE----SDCQPHEHQLMASA 1267
Query: 843 WYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTS 885
WYHV +HP Y Y++ N F+SFPW V D L+ +K TS
Sbjct: 1268 WYHVIHHPKY---YHKSSN---FVSFPWIVGDILLYVKHANTS 1304
>gi|302814495|ref|XP_002988931.1| hypothetical protein SELMODRAFT_235652 [Selaginella moellendorffii]
gi|300143268|gb|EFJ09960.1| hypothetical protein SELMODRAFT_235652 [Selaginella moellendorffii]
Length = 755
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/759 (50%), Positives = 511/759 (67%), Gaps = 25/759 (3%)
Query: 133 AISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS 192
A++ D+G +YV RV VTP +VYF GPE+ SNRV RHF +DNFLR++F+DED D + S
Sbjct: 14 AVAADEGQIYVKRVLVTPLKVYFIGPELEESNRVTRHFSHKLDNFLRVTFVDEDFDSLSS 73
Query: 193 TDLSP-RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY 251
LS RG T T +Y R+L+ LR GI + + F+FLAFS+SQLRE+S WMFA
Sbjct: 74 YVLSSSRGR-----TNTEVYYRLLAILRLGIKLCGKDFQFLAFSASQLRENSLWMFADDD 128
Query: 252 GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKT-K 310
+T IR+WMG+F IRNVAK AAR+GQSFS+S TL V E+ + DV+ + K
Sbjct: 129 EVTGEYIRQWMGDFLSIRNVAKCAARMGQSFSTSTRTLDVPRGEVRQLSDVETFTPEGHK 188
Query: 311 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMR 370
Y FSDGIG +S EFA +VA +C PSAFQIRYGGYKGVVA DP S KLSLR SM
Sbjct: 189 YCFSDGIGTISTEFATRVARRCR-ASTVPSAFQIRYGGYKGVVAVDPASCFKLSLRPSMS 247
Query: 371 KYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 430
K+ SE T LDVL ++Y P +LNR++ISLLSTL + DE+FE+ Q V LD +L D
Sbjct: 248 KFPSEQTTLDVLEKTRYIPSYLNREIISLLSTLEVPDEVFERMQAHQVELLDRMLLDSAA 307
Query: 431 AQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 490
+ L ++ GE +L +++ G+ P EP++ +LQ FRA++LL L K+RIF+P GR
Sbjct: 308 TYDVLRVLYAGECHKLLVSMVLAGFSPVTEPYMRSLLQAFRAAQLLSLEKKSRIFVPKGR 367
Query: 491 SMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSR-QRFIVQGLVVVAKNPCL 549
+MGCLDE R L YGQ FVQ+S + E +R Q F V G VVVAKNPCL
Sbjct: 368 LLMGCLDEQRVLRYGQCFVQVSPLQGVPVEEEIHCDRGVTARNQAFAVTGSVVVAKNPCL 427
Query: 550 HPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ 609
HPGDV VL+AV+VP LHHMVDC+VFPQ+G RPHPNECSGSDLDGD YFV WD LIPP++
Sbjct: 428 HPGDVLVLEAVDVPELHHMVDCIVFPQQGPRPHPNECSGSDLDGDQYFVSWDSALIPPKR 487
Query: 610 DPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCL 669
PPM+Y +M+LDH V++E+++E+F N+I +DSLG+IA+AH +D + R C+
Sbjct: 488 HPPMNYEAPPAMELDHSVRLEEIQEFFVNWITSDSLGVIAHAHLALSDWSELQTRDPKCM 547
Query: 670 QLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAP 729
+LA +S+AVDFPKTGVPA +PP L ++YPDFMEK +K TY S VIGKL+R++++
Sbjct: 548 ELARLYSVAVDFPKTGVPAVMPPELRPEQYPDFMEKRNKRTYISTRVIGKLYRSIRESHR 607
Query: 730 HTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEIL 789
T+ L ++ + YD + V G++ H+++A + K Y+ KL +++++Y + +EAEI+
Sbjct: 608 DTNTSPLVSERSFDQQYDRALVVQGYQSHLEEAKFFKECYNSKLTSILNHYKV-SEAEIM 666
Query: 790 TGSIMKMSKSFTKRRDAEAIG---MAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHV 846
+GSI +++ +++RR +A+ +A +AL KEAR WF + G TE++A AKA AWYHV
Sbjct: 667 SGSIRSLAR-YSRRRQGDAMARVVLAAKALVKEARGWF-DDGGEITENEACAKAFAWYHV 724
Query: 847 TYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTS 885
TYHP + LSFPW V LV IKK ++
Sbjct: 725 TYHP-------EARKESDLLSFPWVV---LVAIKKRNSA 753
>gi|326493668|dbj|BAJ85295.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1127
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/874 (44%), Positives = 553/874 (63%), Gaps = 41/874 (4%)
Query: 26 FVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPY 85
V+ + + S +VP+V P G ++ YE+LF++N LV G + ++++ ++ ++
Sbjct: 263 LVISSMDFFGSSSKVVPLVDCPSGCSVSYEVLFRLNSLVHMGKLVAKHVNADLFKALE-- 320
Query: 86 RAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHR 145
PV IS +K+ L+ CYEP +++ + S S + L+ +R
Sbjct: 321 EIPVHIS--RRIFEKMSKLEFTCYEPLQFIQQEAHSRKRSHDALLSSKTEGEGKLMMCYR 378
Query: 146 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA--T 203
+ +TPS++Y GPE VSN V++H ++ +F R++F+DED K+ +S R +
Sbjct: 379 IHITPSKIYCLGPEEEVSNYVVKHHKQYASDFTRVTFVDEDWSKLFPDAISARTGRGFFS 438
Query: 204 DITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMG 263
+T +Y RILS L+ G IG +K+EFLAFS+SQLR SS WMFAS L A +IR WMG
Sbjct: 439 QPLKTGLYYRILSILKEGFSIGPKKYEFLAFSASQLRGSSVWMFASNDSLKAEDIRRWMG 498
Query: 264 NFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAE 323
NF EIR+V+K AAR+GQ FSSS++TL + ++E IPD+++ TKY+FSDGIGK+S
Sbjct: 499 NFEEIRSVSKCAARMGQLFSSSRQTLDILPRDVEEIPDIEVTTDGTKYIFSDGIGKISER 558
Query: 324 FARKVASKCGLK-DNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVL 382
FA+++A + GL NPPSAFQIRYGGYKGVVA DP S + LSLR SM+K+ES+ ++
Sbjct: 559 FAKEMACRIGLDYTNPPSAFQIRYGGYKGVVAVDPDSFRNLSLRPSMKKFESKSRMFNIT 618
Query: 383 AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGE 442
+ SK QPC++NR++ISLLSTLGI DEIFE Q+ +R+LD +LT+ A L + E
Sbjct: 619 STSKSQPCYMNREIISLLSTLGIRDEIFELMQQHDMRELDEMLTNREAALSVLGKIGSAE 678
Query: 443 NTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL 502
T ++L+ GY+P EP+L M+L+ + ++L ++RT+ +I +P GR ++GCLDET L
Sbjct: 679 -TKTASKILLQGYEPSLEPYLLMILKAHQDNRLTDIRTRCKIHVPKGRVLIGCLDETGEL 737
Query: 503 NYGQVFVQISGAGYRQLHGESSLFSSSRSRQRF-IVQGLVVVAKNPCLHPGDVRVLKAVN 561
YGQV+++I+ Q FS + + +V G V V+KNPCLHPGD+RVL+AV
Sbjct: 738 EYGQVYIRITKNSKEQKDNCQPYFSEDNGKDKTAVVVGKVAVSKNPCLHPGDIRVLEAVY 797
Query: 562 VPALH--HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQ 619
L+ ++VDCVVFPQ+G RPHPNECSG DLDGD+YF+ WD++LIP + D PMDYT A+
Sbjct: 798 DHGLYSKNLVDCVVFPQRGERPHPNECSGGDLDGDLYFITWDEKLIPEKVDSPMDYTAAR 857
Query: 620 SMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAV 679
+DH V +E++++YF +Y++NDSLG I+ AH V ADR P KARS CLQLA S+AV
Sbjct: 858 PRIMDHVVTLEEIQKYFVDYMINDSLGAISTAHLVHADRHPMKARSPECLQLAALHSMAV 917
Query: 680 DFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKD-----IAPHTSCI 734
DF K+G PAE+P L KEYPDFME+ DKPTY S +GKL+RA AP +S
Sbjct: 918 DFAKSGAPAEMPRSLRPKEYPDFMERWDKPTYISNGPLGKLYRAAASRMQSAPAPSSSAQ 977
Query: 735 RLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSI- 793
+ ++DPD+EV GFE+ + A Y KL LM YYG + E EILTG+I
Sbjct: 978 PI-------PAFDPDLEVPGFEEFLVSAEECYDLYAEKLSTLMSYYGTEHEDEILTGNIR 1030
Query: 794 ------MKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVT 847
K +K + + +D I +V L KE R WF + + +A +ASAWYH+
Sbjct: 1031 NRLLYLKKDNKRYFEMKD--RIIDSVEGLHKEVRGWFTSRPKA----EAARRASAWYHMA 1084
Query: 848 YHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKK 881
YHPD+ + G R F SFPW + D L+ IK+
Sbjct: 1085 YHPDH---HQPGKRR--FWSFPWIICDELLTIKE 1113
>gi|315307478|gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/886 (44%), Positives = 560/886 (63%), Gaps = 30/886 (3%)
Query: 7 LELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQN 66
+ D Y+E LE +S ++VP+V P L YEILF++N LV
Sbjct: 242 FSISDMSTYLPCYREDIQSPSLEARGEFSSPSEIVPLVKFPSDSKLAYEILFQLNALVHT 301
Query: 67 GCVAGPLLDSNFYRLVD--PYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 124
++ +D++ ++ P V I L KL L+ CY P ++ +
Sbjct: 302 QKISIAAVDTDLIGILSVLPVETAVMI------LQKLRLLQSPCYNPVSFVKAKLPTGKN 355
Query: 125 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 184
R S + ++ HR +TP+++Y GPE+ +N V+++F +F+R++F++
Sbjct: 356 FRIPLSVSERLKNHNVMSCHRALITPTKIYCLGPELETANYVVKNFAEYASDFMRVTFVE 415
Query: 185 EDLDKIHSTDLSPRGSSATDITR---TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRE 241
ED K+ + +S G +R T+IY RILS L+NGI+IGD++F+FLAFS+SQLR
Sbjct: 416 EDWSKLSANAIST-GVHLGVFSRPFKTKIYDRILSILQNGIVIGDKRFKFLAFSASQLRS 474
Query: 242 SSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPD 301
+S WMFAS + A +IREWMG F++IR+++K A+R+GQ FSSS TL V + ++EII D
Sbjct: 475 NSVWMFASNDEVKAEDIREWMGCFKKIRSISKCASRMGQLFSSSMPTLVVPVQDVEIIDD 534
Query: 302 VKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK 361
++++ Y FSDGIGK+S FAR+VA KCGL ++ PSAFQIRYGGYKGVVA D S
Sbjct: 535 IEVKTDGINYCFSDGIGKISLPFARQVAEKCGL-NHIPSAFQIRYGGYKGVVAVDRNSFW 593
Query: 362 KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL 421
K+SLRDSM K+ES++ L+V WS+ PCFLNR++++L STLGI DE+FE+ Q E + L
Sbjct: 594 KMSLRDSMLKFESKVRMLNVTKWSESMPCFLNREIVTLFSTLGIKDEVFERMQEEQLCLL 653
Query: 422 DAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTK 481
+LT+ A + L+ + + NIL E+L +P+ +P+LSMMLQ + L +L+++
Sbjct: 654 GKMLTNREAALDTLQSLGGVNSKNILVEMLQFD-EPNVQPYLSMMLQAHYENLLSDLKSR 712
Query: 482 TRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLV 541
RIF+P GR ++GCLDET TLNYGQV++ I + S F + IV G V
Sbjct: 713 CRIFVPKGRILIGCLDETGTLNYGQVYLCIKMKKAELECADQSYFRKV-DEETAIVIGKV 771
Query: 542 VVAKNPCLHPGDVRVLKAVNVPALHH--MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVC 599
VV KNPCLHPGDVRVL+AV P L +VDC+VFP+KG RPHPNECSG DLDGD +F+
Sbjct: 772 VVTKNPCLHPGDVRVLEAVYEPQLEEKGLVDCLVFPEKGERPHPNECSGGDLDGDQFFIS 831
Query: 600 WDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADRE 659
WD +LIP Q +PPMDYT + +DH+V +E+++++F +Y++ND+LG I+ AH V ADRE
Sbjct: 832 WDKDLIPCQTEPPMDYTGRRPRIMDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADRE 891
Query: 660 PRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGK 719
P KARSE CL LA S+AVDF KTG PAE+P L +E+PDFM++ +KP Y S V+GK
Sbjct: 892 PYKARSENCLALATLHSMAVDFAKTGAPAEMPRALKPREFPDFMQRGNKPMYTSSGVLGK 951
Query: 720 LFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDY 779
L+RA + ++TKE+A +YD D+EV+GFE I A HK Y+ ++ LM Y
Sbjct: 952 LYRATINSTVQIRSKFVWTKEMAELAYDHDLEVNGFESLISVAETHKEMYEERMSLLMSY 1011
Query: 780 YGIKTEAEILTGSIMKMSKSFTK--RRDAEA---IGMAVRALRKEARAWFKEKSGSDTED 834
Y ++ E EILTG++ ++ + RR E I ++V+ L++EA+ WF KS D
Sbjct: 1012 YDVEYEDEILTGNMYNKAQFLLRDNRRYGEMKERIVLSVKDLQREAKEWF--KSSCSKAD 1069
Query: 835 DAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIK 880
+ ASAWY+VTYHP+Y + + MN LSFPW V D L+ IK
Sbjct: 1070 EHQKLASAWYYVTYHPNY---FEERMNS---LSFPWIVGDILLRIK 1109
>gi|356513586|ref|XP_003525493.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1262
Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/889 (43%), Positives = 563/889 (63%), Gaps = 40/889 (4%)
Query: 11 DFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVA 70
D ++F YKE+ LE G + S + VP+V LPYE LF++N LV ++
Sbjct: 246 DVFKSFPLYKENLRDLALEDGEEFCSSTEAVPLVKRASQSKLPYEALFQLNSLVHTQKIS 305
Query: 71 GPLLDSNFYRLV----DPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSR 126
+D L+ + RA + + KL+ + CYEP +++ Q ++ S
Sbjct: 306 LASVDDELIDLLAGLDEETRAVIFL--------KLHKMSFTCYEPLKFVKTQL--HVLSN 355
Query: 127 SKPSSPAIS----LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISF 182
K P S D ++ HR +TP+++Y GPE+ SN V++HF +F+RI+F
Sbjct: 356 KKKGLPQSSQKRLTDSNIMSCHRALITPTKIYCLGPELETSNHVVKHFASHASDFMRITF 415
Query: 183 IDEDLDKIHSTDLSPRGSSA--TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLR 240
++E+ +K+ + +S + +T IY RIL+ LR+GI+IG ++FEFLAFS+SQLR
Sbjct: 416 VEENWNKLPTNAVSTGVQKGLFSKPLKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLR 475
Query: 241 ESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIP 300
+S W+FAS L AA+IREWMG F IR+V+K AAR+GQ FSSS +T V ++EIIP
Sbjct: 476 SNSVWLFASNDNLKAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVVSQDVEIIP 535
Query: 301 DVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS 360
DV++ Y FSDGIGK+S FAR+VA K L D+ PSAFQIRYGG+KGV+A D S
Sbjct: 536 DVEVISDGVSYCFSDGIGKISQSFARQVAQKLKL-DHTPSAFQIRYGGFKGVIAVDRRSF 594
Query: 361 KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQ 420
+KLSLR SM K+ES+ + L V WS+ PCFLNR++ISLLSTLG+ DE+ Q + +
Sbjct: 595 RKLSLRSSMLKFESKNSMLCVTKWSESMPCFLNREIISLLSTLGVKDEVLLAMQHDQLDL 654
Query: 421 LDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRT 480
L +LTD A E LE ++ ++ +IL ++L +P++EP+LSMML+ + A +L +L++
Sbjct: 655 LGRMLTDSKAALEVLESLNGADSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKS 714
Query: 481 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL 540
+ RIF+P GR ++GCLDET LNYGQVFV+I+ R+ G+ +L I+ G
Sbjct: 715 RCRIFVPKGRVLVGCLDETGLLNYGQVFVRITVTKTREKFGDENLRKVDGDDNTCIIVGK 774
Query: 541 VVVAKNPCLHPGDVRVLKAVNVPALHH--MVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 598
VVV KNPCLHPGD+RVL A+ L + DC+VFPQKG RPHPNECSG DLDGD++F+
Sbjct: 775 VVVTKNPCLHPGDIRVLDAIYSEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFI 834
Query: 599 CWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADR 658
WD +LIP Q + PMDYT + +DH V +E+++++F +Y++ND+LG I+ AH V ADR
Sbjct: 835 SWDKDLIPCQTEAPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADR 894
Query: 659 EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIG 718
E KA+S CL+LAE S+AVDF KTG PA +P L +E+PDFME+ DKP Y S+ V+G
Sbjct: 895 EQDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVDKPMYISKGVLG 954
Query: 719 KLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMD 778
KL+RA+ + +++++ A +YD +EV+GFE ++ A HK Y K+ +LMD
Sbjct: 955 KLYRAIIESQMQIRYSFVWSEKHAEEAYDRSLEVNGFEAFLETASTHKEMYAEKMSSLMD 1014
Query: 779 YYGIKTEAEILTGSIMKMSKSFTKRRD------AEAIGMAVRALRKEARAWFKEKSGSDT 832
+YG +TE E+L G++ + S+ +R + + I ++V+ L++EA+ WF+ +
Sbjct: 1015 FYGAETEDEMLLGNLQNRA-SYLQRDNRRYGDMKDRILLSVKNLQREAKEWFE----TSC 1069
Query: 833 EDDAYA-KASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIK 880
E Y ASAWYHVTYHP Y+ C FLSFPW V + L++I+
Sbjct: 1070 EPHEYKPMASAWYHVTYHPSYY-CRESPC----FLSFPWIVGEILLQIR 1113
>gi|315307484|gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/884 (44%), Positives = 559/884 (63%), Gaps = 26/884 (2%)
Query: 7 LELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQN 66
+ D Y+E LE +S ++VP+V P L YEILF++N LV
Sbjct: 242 FSISDMSTYLPCYREDIQSPSLEARREFSSPSEIVPLVKFPSDSKLAYEILFQLNALVHT 301
Query: 67 GCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSR 126
++ +D++ ++ PV + + L KL L+ CY P ++ + R
Sbjct: 302 QKISIAAVDTDLIGILSGL--PVETAVM--ILQKLRLLQSPCYNPVSFVKAKLPTGKNYR 357
Query: 127 SKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED 186
S + ++ R +TP+++Y GPE+ +N V+++F +F+R++F++ED
Sbjct: 358 IPLSVSERLKNHNVMSCRRALITPTKIYCLGPELETANYVVKNFVEYASDFMRVTFVEED 417
Query: 187 LDKIHSTDLSPRGSSATDITR---TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS 243
K+ + +S G +R T+IY RIL L+NGI+IGD++FEFLAFS+SQLR +S
Sbjct: 418 WSKLSANAIST-GVHLGVFSRPFKTKIYDRILYVLQNGIVIGDKRFEFLAFSASQLRSNS 476
Query: 244 AWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 303
WMFAS + A +IREWMG F++IR+++K A+R+GQ FSSS TL V + ++EII D++
Sbjct: 477 VWMFASNDEVKAEDIREWMGCFKKIRSISKCASRMGQLFSSSMPTLVVPVQDVEIIDDIE 536
Query: 304 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL 363
++ Y FSDGIGK+S FAR+VA KCGL ++ PSAFQIRYGGYKGVVA D S K+
Sbjct: 537 VKTDGINYCFSDGIGKISLPFARQVAEKCGL-NHIPSAFQIRYGGYKGVVAVDRNSFWKM 595
Query: 364 SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 423
SLRDSM K+ES++ L+V WS+ PCFLNR++++L STLGI DE+FE+ Q E + L
Sbjct: 596 SLRDSMLKFESKVRMLNVTKWSESMPCFLNREIVTLFSTLGIKDEVFERMQEEQLCLLGK 655
Query: 424 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 483
+LT+ A + L+ + + NIL E+L Y+P+ +P+LSMMLQ + L +L+++ R
Sbjct: 656 MLTNREAALDTLQSLGGVNSKNILVEMLQF-YEPNVQPYLSMMLQAHYENLLSDLKSRCR 714
Query: 484 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVV 543
IF+P GR ++GCLDET TLNYGQV++ I + S F + IV G VVV
Sbjct: 715 IFVPKGRILIGCLDETGTLNYGQVYLCIKMKKAELECADQSYFRKV-DEETAIVIGKVVV 773
Query: 544 AKNPCLHPGDVRVLKAVNVPALHH--MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWD 601
KNPCLHPGDVRVL+AV P L +VDC+VFPQKG RPHPNECSG DLDGD +F+ WD
Sbjct: 774 TKNPCLHPGDVRVLEAVYEPQLEEKGLVDCLVFPQKGERPHPNECSGGDLDGDQFFISWD 833
Query: 602 DELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPR 661
+LIP Q +PPMDYT + +DH+V +E+++++F +Y++ND+LG I+ AH V ADREP
Sbjct: 834 KDLIPCQTEPPMDYTGRRPRIMDHEVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPD 893
Query: 662 KARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLF 721
KA SE CL LA S+AVDF KTG PAE+P L +E+PDFM++ +KP Y S V+GKL+
Sbjct: 894 KACSENCLALATLHSMAVDFAKTGAPAEMPRALKPREFPDFMQRGNKPMYTSSGVLGKLY 953
Query: 722 RAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYG 781
RA + T ++TKE+A YD D+EV+GFE I A HK Y+ ++ LM YY
Sbjct: 954 RATINSTVQTRSKFVWTKEMAELVYDHDLEVNGFESLISVAETHKEMYEERMSLLMSYYD 1013
Query: 782 IKTEAEILTGSIMKMSKSFTK--RRDAEA---IGMAVRALRKEARAWFKEKSGSDTEDDA 836
++ E EILTG+I ++ + RR E I ++V+ L++EA+ WF KS D+
Sbjct: 1014 VEYEDEILTGNIYNKAQFLLRDNRRYGEMKERIVLSVKDLQREAKEWF--KSSCSKADEH 1071
Query: 837 YAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIK 880
ASAWY+VTYHP+Y + + MN LSFPW V D L+ +K
Sbjct: 1072 QKLASAWYYVTYHPNY---FQERMNS---LSFPWIVGDILLRVK 1109
>gi|357117510|ref|XP_003560510.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Brachypodium
distachyon]
Length = 1138
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/861 (44%), Positives = 557/861 (64%), Gaps = 32/861 (3%)
Query: 37 SLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH 96
S +VP+V P G ++ YE+LF++N LV G + +++N + ++ + P+ IS
Sbjct: 271 SSKVVPLVDCPHGCSVSYEVLFRLNSLVHTGKIVAKHVNANLFTFLE--QVPLHIS--RK 326
Query: 97 ALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFC 156
+K+ L+ CYEP +++ + + +T + SS + L+ +R+ +TPS++Y
Sbjct: 327 IFEKMSKLESTCYEPLQFIESELK--LTQNALLSSKREG-EGKLMRCYRIHITPSKIYCL 383
Query: 157 GPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA--TDITRTRIYTRI 214
GP+ SN V++H +F+R++F+DED K+ +S R + +T +Y RI
Sbjct: 384 GPQEEASNYVVKHHSEYASDFVRVTFVDEDWSKLSVNAISARIEQGFFSQPFKTGLYYRI 443
Query: 215 LSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKY 274
LS L+ G +IG +KF+FLAFS+SQLRE S WMFAS L A IR WMG+F EI +V+K
Sbjct: 444 LSILKEGFIIGPKKFKFLAFSASQLREGSVWMFASNDSLNAEGIRRWMGHFEEICSVSKC 503
Query: 275 AARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL 334
AAR+GQ FSSS++T+ V ++E IPD+++ KY+FSDGIGK+S FA+++A + GL
Sbjct: 504 AARMGQLFSSSRQTVEVRPKDVEEIPDIEVITNNMKYIFSDGIGKMSVRFAKEIAYRIGL 563
Query: 335 -KDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLN 393
NPPSAF+IR+GGYKGV+A DP+S + LSLR SMRK+ES+ L++ +WSK QPC +N
Sbjct: 564 DHKNPPSAFEIRFGGYKGVIAVDPSSYRNLSLRPSMRKFESDCRMLNITSWSKSQPCHVN 623
Query: 394 RQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLIC 453
R++ISLLSTLGI DE+FE Q++ + +LD +LT+ A L + E T ++L+
Sbjct: 624 REIISLLSTLGIRDEVFELMQQDDMCELDEMLTNKEIALSVLGKIGSAE-TKTAADMLLQ 682
Query: 454 GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISG 513
GYKP +EP+L M+L+ + ++L ++R+K +I +P GR ++GCLDET L YGQV+++I+
Sbjct: 683 GYKPISEPYLLMILKAHQDNRLTDIRSKFKIHVPKGRVLLGCLDETGILKYGQVYIRITK 742
Query: 514 AGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH--HMVDC 571
Q E F + +V G V V+KNPCLHPGDVRVL+AV LH +VDC
Sbjct: 743 NNKEQKENEQPYFCKDDGKTVTLV-GKVAVSKNPCLHPGDVRVLEAVCDLELHATKLVDC 801
Query: 572 VVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIED 631
VVFPQ+G RPHPNECSG DLDGD+YFV WDD LIP + D PMDYT A+ +DH V +E+
Sbjct: 802 VVFPQRGERPHPNECSGGDLDGDLYFVTWDDRLIPEKADTPMDYTAARPRIMDHVVTLEE 861
Query: 632 VEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIP 691
++++ NY+++DSLG I+NAH + ADR+P KARS CL+LA S+AVDF KTG PAE+P
Sbjct: 862 IQQHVVNYMLSDSLGAISNAHLIHADRDPMKARSPECLRLAALHSMAVDFAKTGAPAELP 921
Query: 692 PHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDME 751
L +E+PDFME+ DKP Y S V+GKL+RA ++ S L ++ + +YD ++E
Sbjct: 922 RSLRPREFPDFMERWDKPMYISTGVLGKLYRAA--VSRMESSHALASQVQSSPTYDRELE 979
Query: 752 VDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSI-------MKMSKSFTKRR 804
V GFE+ ++DA H Y KL LM+Y G + E E+LTG+I K K ++ +
Sbjct: 980 VPGFEEFLEDADKHYDLYVEKLTTLMNYDGAEHEDEMLTGNIRNRLLYLRKDRKRYSDMK 1039
Query: 805 DAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDH 864
D I +V AL +E R WF S E++A ASAWY VTYHPD+ + +
Sbjct: 1040 D--RIVDSVNALHEEVRGWF--HSCLKAEEEASRVASAWYRVTYHPDH-----RRPEKKQ 1090
Query: 865 FLSFPWCVYDRLVEIKKDKTS 885
F SFPW + D+L+ IK+ K++
Sbjct: 1091 FWSFPWIICDKLLAIKESKSN 1111
>gi|125548642|gb|EAY94464.1| hypothetical protein OsI_16234 [Oryza sativa Indica Group]
Length = 1136
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/863 (44%), Positives = 545/863 (63%), Gaps = 42/863 (4%)
Query: 37 SLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH 96
S ++VP+V P ++PYE+LF++N L+ G + ++++ ++ + PV +S
Sbjct: 272 SSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAKHVNADLFKALQ--ELPVDVS--RR 327
Query: 97 ALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDG-------LVYVHRVQVT 149
+K++ L+ CYEP +++ Q Y RS + ++G L+ +RV +T
Sbjct: 328 IFEKMHKLESTCYEPLQFI--QQEAYSMKRSHN---VLLSNEGEGEGERKLMKCYRVNIT 382
Query: 150 PSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA--TDITR 207
PS+++ GPE V+N V++H +F+R++F+DED K+ S +S R + +
Sbjct: 383 PSKIFCLGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSNAISARIEQGFFSKPFK 442
Query: 208 TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFRE 267
T +Y RILS L+ G IG + FEFLAFS+SQLR +S WMFAS L A IR WMG+F
Sbjct: 443 TGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNASLNAGGIRRWMGHFEN 502
Query: 268 IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARK 327
IR+V+K AAR+GQ FSSS++T V ++E+IPD++I +KY+FSDGIGK+S FA++
Sbjct: 503 IRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTDGSKYIFSDGIGKISLRFAKR 562
Query: 328 VASKCGLK-DNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSK 386
VA GL N PSAFQIRYGGYKGV+A DP SS LSLR SM+K+ESE L++ +WSK
Sbjct: 563 VAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPSMKKFESESRMLNITSWSK 622
Query: 387 YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI 446
QPC++NR++ISLLSTLGI DEIF Q++ +R+ + +LT+ A L + G T
Sbjct: 623 SQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVALSVLGKLG-GSETKT 681
Query: 447 LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQ 506
++L+ GY+P +EP+LSM+L+ + ++L ++RT+ +I +P GR ++GCLDET L YGQ
Sbjct: 682 AVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRVLIGCLDETGVLEYGQ 741
Query: 507 VFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH 566
V+++I+ Q S F + + +V G V + KNPCLHPGD+RVL+A+ P L
Sbjct: 742 VYIRITKNSKEQKDSNQSYFYNDDGKTATVV-GKVAITKNPCLHPGDIRVLEAIYDPDLV 800
Query: 567 HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHD 626
MVDC+VFPQ+G RPHPNECSG DLDGD+YF+ WDD+LIP + D PMDYT + +DH
Sbjct: 801 GMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTPMDYTATRPRIMDHV 860
Query: 627 VQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGV 686
V +E+++++F +Y++NDSLG I+ AH + ADR P KARS CLQLA S+AVDF KTG
Sbjct: 861 VTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGA 920
Query: 687 PAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRS- 745
PAE+P L +EYPDFME+ +KP Y S V+GKL+R+ + + A+ S
Sbjct: 921 PAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPSP 980
Query: 746 -YDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRR 804
YDPD+EV G ++ + A + Y+ KL LM+YY + E EILTG+I +K +R
Sbjct: 981 TYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAEHEDEILTGNI--RNKMLYLKR 1038
Query: 805 D-------AEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYN 857
D + I AV AL +EAR W S E+DA ASAWY VTYHPD
Sbjct: 1039 DNKRYFEMKDRIVAAVDALHREARGWLLS---SRKEEDASRMASAWYRVTYHPD----RR 1091
Query: 858 QGMNRDHFLSFPWCVYDRLVEIK 880
+G F SFPW D L+ IK
Sbjct: 1092 RG---KRFWSFPWIACDNLLAIK 1111
>gi|51989474|gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
Length = 1120
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/874 (43%), Positives = 550/874 (62%), Gaps = 31/874 (3%)
Query: 24 DRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVD 83
D + E G YS S +LVP+ P + LPYEILF++N L+ ++ + ++ ++
Sbjct: 260 DLVLDEVGDIYSAS-ELVPLASFPSDLKLPYEILFQLNSLIHTHKISLGAVKTDLIEVLS 318
Query: 84 PYRAPVSISCIEHALDKLYHLKECCYEPSRWL-TDQYRKYMTSRSKPSSPAISL-DDGLV 141
++ L K++ L+ C+EP ++ T + S+++PSS L + ++
Sbjct: 319 KLELDTAM----MILQKMHKLQSTCFEPVPFIKTRLHVLGKNSKNQPSSSYSRLVNQNMM 374
Query: 142 YVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKI--HSTDLSPRG 199
VHRV VTPS+VY GPE+ SN ++++F +FLR++F++ED K+ ++ +S
Sbjct: 375 SVHRVLVTPSKVYCLGPELETSNYIVKNFALHASDFLRVTFVEEDWGKLSPNAISMSVEQ 434
Query: 200 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 259
RT+IY RILS LR+G++IG ++F FLAFS+SQLR +S WMFAS + A +IR
Sbjct: 435 GIFAKPYRTKIYHRILSILRDGLVIGSKRFLFLAFSASQLRSNSVWMFASNEHVKAEDIR 494
Query: 260 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 319
EWMG F +IR+V+K AAR+GQ FS+S +T+ V +EI+PD+++ Y FSDGIGK
Sbjct: 495 EWMGCFNKIRSVSKCAARMGQLFSTSFQTMEVQSPHVEILPDIEVTSDGVSYCFSDGIGK 554
Query: 320 VSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKL 379
+S FA +VA KCGL PSAFQIRYGGYKGV+A D S +KLSLR SM K+ES+ L
Sbjct: 555 ISQAFASQVAQKCGL-SYTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFESKNRML 613
Query: 380 DVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMS 439
++ WS PC+LNR+++ LLSTLG+ D++FE + L +LT A + LE +
Sbjct: 614 NITKWSDAMPCYLNREIVILLSTLGVEDKVFEDLLDNHLHLLGKMLTTNEAALDVLESIG 673
Query: 440 PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET 499
G+ IL +L GY P+ EP+LSMMLQ+ ++L +LR++ RIFI GR ++GCLDET
Sbjct: 674 GGDVKKILMRMLHQGYAPNLEPYLSMMLQSHFENQLSDLRSRCRIFIHKGRVLVGCLDET 733
Query: 500 RTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 559
LNYGQV+ +I+ + S F +V+G VVV KNPCLHPGDVRVL+A
Sbjct: 734 GILNYGQVYARITMTKAELQSAQQSFFQKV-DETTAVVRGNVVVTKNPCLHPGDVRVLEA 792
Query: 560 VNVPALHH--MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTP 617
V AL VDC++FPQKG RPHPNECSG DLDGD+YF+ WD+ LIP Q PMDYT
Sbjct: 793 VYEVALEEKAWVDCIIFPQKGERPHPNECSGGDLDGDLYFISWDENLIPRQTVTPMDYTG 852
Query: 618 AQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSI 677
++ +DH+V +++++ +F +Y+++D+LG I+ AH V ADREP KA + CLQLA S+
Sbjct: 853 RRTRIMDHEVTLQEIQRFFVDYMISDTLGAISTAHLVHADREPDKALNPKCLQLATLHSM 912
Query: 678 AVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLF 737
AVDF KTG AE+P L +E+PDF+E+ DKP Y S+ V+GKL+RA+ + + ++ L
Sbjct: 913 AVDFAKTGAAAEMPRFLKPREFPDFLERWDKPMYISEGVLGKLYRAIVNSSVRSNSDDLG 972
Query: 738 TKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMS 797
+ + +YD + DG+E I+ A HK Y ++ +L++YYG + E EILTG++ +
Sbjct: 973 SVRAIQDAYDHALLFDGYEAFIETAKNHKETYLDRMNSLLNYYGAEKEVEILTGNLRQ-- 1030
Query: 798 KSFTKRRD-------AEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHP 850
KS +RD + I ++ ++L+KE + WF +G ED+ ASAWYHVTYHP
Sbjct: 1031 KSVYLQRDNRRYFELKDRILVSAKSLQKEVKGWF---TGCCKEDEHKKLASAWYHVTYHP 1087
Query: 851 DYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKT 884
Y C + L FPW V D L++IK T
Sbjct: 1088 SY--CEGSA----NCLGFPWVVGDILLDIKLHNT 1115
>gi|75327281|sp|Q7XM31.1|RDR2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 2; Short=OsRDR2
gi|32492169|emb|CAE04828.1| OSJNBb0048E02.13 [Oryza sativa Japonica Group]
Length = 1136
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/863 (44%), Positives = 544/863 (63%), Gaps = 42/863 (4%)
Query: 37 SLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH 96
S ++VP+V P ++PYE+LF++N L+ G + ++++ ++ + PV +S
Sbjct: 272 SSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAKHVNADLFKALQ--ELPVDVS--RR 327
Query: 97 ALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDG-------LVYVHRVQVT 149
+K++ L+ CY P +++ Q Y RS + ++G L+ +RV +T
Sbjct: 328 IFEKMHKLESTCYGPLQFI--QQEAYSMKRSHN---VLLSNEGEGEGERKLMKCYRVNIT 382
Query: 150 PSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA--TDITR 207
PS+++ GPE V+N V++H +F+R++F+DED K+ S +S R + +
Sbjct: 383 PSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSNAISARIEQGFFSKPFK 442
Query: 208 TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFRE 267
T +Y RILS L+ G IG + FEFLAFS+SQLR +S WMFAS L A IR WMG+F
Sbjct: 443 TGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNASLNAGGIRRWMGHFEN 502
Query: 268 IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARK 327
IR+V+K AAR+GQ FSSS++T V ++E+IPD++I +KY+FSDGIGK+S FA++
Sbjct: 503 IRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTDGSKYIFSDGIGKISLRFAKR 562
Query: 328 VASKCGLK-DNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSK 386
VA GL N PSAFQIRYGGYKGV+A DP SS LSLR SM+K+ESE L++ +WSK
Sbjct: 563 VAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPSMKKFESESRMLNITSWSK 622
Query: 387 YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI 446
QPC++NR++ISLLSTLGI DEIF Q++ +R+ + +LT+ A L + G T
Sbjct: 623 SQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVALSVLGKLG-GSETKT 681
Query: 447 LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQ 506
++L+ GY+P +EP+LSM+L+ + ++L ++RT+ +I +P GR ++GCLDET L YGQ
Sbjct: 682 AVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRVLIGCLDETGVLEYGQ 741
Query: 507 VFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH 566
V+++I+ Q S F + + +V G V + KNPCLHPGD+RVL+A+ P L
Sbjct: 742 VYIRITKNSKEQKDSNQSYFYNDDGKTATVV-GKVAITKNPCLHPGDIRVLEAIYDPDLV 800
Query: 567 HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHD 626
MVDC+VFPQ+G RPHPNECSG DLDGD+YF+ WDD+LIP + D PMDYT + +DH
Sbjct: 801 GMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTPMDYTATRPRIMDHV 860
Query: 627 VQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGV 686
V +E+++++F +Y++NDSLG I+ AH + ADR P KARS CLQLA S+AVDF KTG
Sbjct: 861 VTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGA 920
Query: 687 PAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRS- 745
PAE+P L +EYPDFME+ +KP Y S V+GKL+R+ + + A+ S
Sbjct: 921 PAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPSP 980
Query: 746 -YDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRR 804
YDPD+EV G ++ + A + Y+ KL LM+YY + E EILTG+I +K +R
Sbjct: 981 TYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDEILTGNI--RNKMLYLKR 1038
Query: 805 D-------AEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYN 857
D + I AV AL +EAR W S E+DA ASAWY VTYHPD
Sbjct: 1039 DNKRYFEMKDRIVAAVDALHREARGWLLS---SRKEEDASRMASAWYRVTYHPD----RR 1091
Query: 858 QGMNRDHFLSFPWCVYDRLVEIK 880
+G F SFPW D L+ IK
Sbjct: 1092 RG---KRFWSFPWIACDNLLAIK 1111
>gi|297809335|ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
gi|297318388|gb|EFH48810.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
Length = 1134
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/888 (42%), Positives = 548/888 (61%), Gaps = 36/888 (4%)
Query: 11 DFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPD-GIALPYEILFKINLLVQNGCV 69
D YY+E G ++ +VP++ G+ PYEILF++N LV +
Sbjct: 250 DVFSGLPYYREETLSLTFVDGKNFASVSQIVPLLNAAILGLEFPYEILFQLNALVHAQKI 309
Query: 70 AGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTS-RSK 128
+ L ++ L++ +R +S+ L KL+ CY+P ++ Q + + +
Sbjct: 310 S--LFAASNMELINIFRG-LSLETTLVILKKLHQQSSICYDPLFFVKTQMQSVVKKMKHS 366
Query: 129 PSSPAISL-DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDL 187
P+S L + ++ R VTPS++Y GPE+ +N V+++F + +F+R++F++ED
Sbjct: 367 PASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDW 426
Query: 188 DKIHSTDLSPRGSSATDIT--RTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAW 245
K+ + L+ + RT IY R+LS L GI +G ++FEFLAFS+SQLR +S W
Sbjct: 427 SKLPANALTVNSKEGYFVKPFRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVW 486
Query: 246 MFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE 305
MFAS + A +IREWMG FR+IR+++K AAR+GQ FS+S++TL+V ++E IPD+++
Sbjct: 487 MFASNEKIKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLNVRAQDVEQIPDIEVT 546
Query: 306 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL 365
Y FSDGIGK+S FA++VA KCGL + PSAFQIRYGGYKGV+A D +S +K+SL
Sbjct: 547 TDGADYCFSDGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVIAVDRSSFRKMSL 605
Query: 366 RDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL 425
RDSM K++S L+V W++ PCFLNR++I LLSTLGI D +FE Q + L +L
Sbjct: 606 RDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAVFEAMQAVHLSMLGNML 665
Query: 426 TDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 485
D A L+ +S + N+L ++L+ GY P +EP+LSMML+ S+L EL+++ RI
Sbjct: 666 EDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRIL 725
Query: 486 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 545
+P GR ++GC+DE L YGQVFV+++ E S F + +V G VVV K
Sbjct: 726 VPKGRILIGCMDEMGILEYGQVFVRVTLTKAELKSREQSYFHKI-DEETSVVIGKVVVTK 784
Query: 546 NPCLHPGDVRVLKAVNVPALHH--MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
NPCLHPGD+RVL A+ +DC++FPQKG RPHPNECSG DLDGD +FV WD++
Sbjct: 785 NPCLHPGDIRVLDAIYEVNFEEKGFLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEK 844
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
LIP Q DPPMDY ++ +DHDV +E++ ++F +Y+++D+LG+I+ AH V ADR+P KA
Sbjct: 845 LIPSQMDPPMDYAGSRPRIMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKA 904
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRA 723
RS+ CL+LA S AVDF KTG PAE+P L +E+PDF+E+ +KPTY S++V GKL+RA
Sbjct: 905 RSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRA 964
Query: 724 VKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIK 783
V+ + + +YD +E GFE I+ A H+ Y KL +LM YYG
Sbjct: 965 VRSSLAQR---KPEAESDGTLTYDATLEEAGFESFIETAKAHRDMYAEKLTSLMIYYGAV 1021
Query: 784 TEAEILTGSIMKMSKSFTKRRD------AEAIGMAVRALRKEARAWFKEKSGSDTEDDAY 837
E EILTG I+K + + R + + I ++V+ L KEA WF +KS D E
Sbjct: 1022 NEEEILTG-ILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWF-DKSCED-EQQKK 1078
Query: 838 AKASAWYHVTYHPDYWGCYNQGMNRDH---FLSFPWCVYDRLVEIKKD 882
ASAWY+VTY+P + RD FLSFPW V D L++IK +
Sbjct: 1079 KLASAWYYVTYNPSH---------RDEKLTFLSFPWIVGDVLLDIKAE 1117
>gi|356565022|ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1120
Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/887 (43%), Positives = 558/887 (62%), Gaps = 36/887 (4%)
Query: 11 DFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVA 70
D +F YKE+ LE + VP+V LPYE +F++N LV ++
Sbjct: 245 DVFTSFPLYKENLRDLALEDREELCSLTEAVPLVKHATQSKLPYEAVFQLNSLVHTQKIS 304
Query: 71 GPLLDSNFYRLV----DPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSR 126
+D L+ + RA V KL+ + CYEP +++ Q ++++
Sbjct: 305 LASVDDELIDLLADLDEETRAVV--------FQKLHKMSFTCYEPLKFVKTQLH-VLSNK 355
Query: 127 SKP--SSPAISL-DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI 183
K SP L D ++ HR +TP+++Y GPE+ SN V++HF +F+RI+F+
Sbjct: 356 KKGLLQSPQNRLTDSNIMSCHRALITPTKIYCLGPELETSNHVVKHFASLASDFMRITFV 415
Query: 184 DEDLDKIHSTDLSPRGSSA--TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRE 241
+E+ +K+ + +S + +T IY RIL+ LR+GI+IG ++FEFLAFS+SQLR
Sbjct: 416 EENWNKLPTNAVSTGVQKGIFSKPLKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRS 475
Query: 242 SSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPD 301
+S W+FAS L AA+IREWMG F IR+V+K AAR+GQ FSSS +T V +++E+IPD
Sbjct: 476 NSVWLFASNDNLKAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVASEDVEMIPD 535
Query: 302 VKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK 361
+++ Y FSDGIGK+S FAR+VA K L D+ PSAFQIRYGG+KGV+A D S +
Sbjct: 536 IEVTSDGVSYCFSDGIGKISQCFARQVAQKLNL-DHTPSAFQIRYGGFKGVIAIDRHSFR 594
Query: 362 KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL 421
KLSLR SM K+ES L V WS+ PCFLNR++ISLL+TLG+ DE+ Q++ + L
Sbjct: 595 KLSLRSSMLKFESNNRMLCVTKWSESMPCFLNREIISLLTTLGVKDEVLLAMQQDQLDLL 654
Query: 422 DAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTK 481
+LTD A + LE ++ ++ +IL ++L +P++EP+LSMML+ + A +L +L+++
Sbjct: 655 GRMLTDSKAALDVLESLNGADSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSR 714
Query: 482 TRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLV 541
RIF+P GR ++GCLDET LNYGQVFV+I+ A R+ G+ +L I+ G V
Sbjct: 715 CRIFVPKGRVLVGCLDETGLLNYGQVFVRITVAKTRENFGDENLRKVDGDDSTRIIVGKV 774
Query: 542 VVAKNPCLHPGDVRVLKAVNVPALHH--MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVC 599
VV KNPCLHPGD+RVL A+ L + DC+VFPQKG RPHPNECSG DLDGD++F+
Sbjct: 775 VVTKNPCLHPGDIRVLDAIYSKELEENGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFLS 834
Query: 600 WDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADRE 659
WD +LIP Q + PMDYT + +DH V +E+++++F +Y++ND+LG I+ AH V ADRE
Sbjct: 835 WDKDLIPCQTEAPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADRE 894
Query: 660 PRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGK 719
KA+S CL+LAE S+AVDF KTG PA +P L +E+PDFME+ DKP Y S+ V+GK
Sbjct: 895 QDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVDKPMYISKGVLGK 954
Query: 720 LFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDY 779
L+ A+ + +++++ A +YD +EV+GFE ++ A HK Y K+ +LMD+
Sbjct: 955 LYHAIIESQMQIRYSFVWSEKHAEEAYDRSLEVNGFEAFLETASTHKEMYAEKMSSLMDF 1014
Query: 780 YGIKTEAEILTGSIMKMSKSFTKRRD------AEAIGMAVRALRKEARAWFKEKSGSDTE 833
YG +TE E+L G++ + S+ +R + + I ++V+ L++EA+ WF+ S
Sbjct: 1015 YGAETEDEMLLGNVQNRA-SYLQRDNRRYGDMKDRILLSVKNLQREAKEWFET---SCQP 1070
Query: 834 DDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIK 880
+ ASAWYHVTYH ++ C FLSFPW V D L++I+
Sbjct: 1071 REYKPMASAWYHVTYHRSHY-CQESPC----FLSFPWIVGDILLQIR 1112
>gi|302819337|ref|XP_002991339.1| hypothetical protein SELMODRAFT_448382 [Selaginella moellendorffii]
gi|300140919|gb|EFJ07637.1| hypothetical protein SELMODRAFT_448382 [Selaginella moellendorffii]
Length = 1134
Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/894 (45%), Positives = 555/894 (62%), Gaps = 47/894 (5%)
Query: 17 AYYKESEDR-FVLETGSAYSRSLDLVPI--VGPPDGIALPYEILFKINLLVQNGCVAGPL 73
Y S DR L G +Y+ +L PI + DG LP++I++KIN LVQ+G ++
Sbjct: 263 GYDTSSMDRALTLVAGESYALQQELSPILSITEDDGAPLPFDIVYKINFLVQSGYMSPAS 322
Query: 74 LDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPA 133
+ + L+ + + +S ALDKL + + Y K RS+ P
Sbjct: 323 VTRELFTLLQGFPEKLCLS----ALDKLVSPAGNVSLDAFSTIESYLKCHHRRSELVEP- 377
Query: 134 ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHST 193
D G YV R+ VTP++VY GPE+ SN V R ++ NFLR+SF+DE+ + +++
Sbjct: 378 ---DGGYTYVKRLVVTPAKVYCTGPELERSNGVTRRYKDFAANFLRVSFVDENFETLYAD 434
Query: 194 DLSPRGSSATDITR----TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS 249
+ + I + +Y R+L+ +R+G+ IG +KF+FL FS+SQLRE S WMFA
Sbjct: 435 AVRLPTKVSVQIGLLPEPSSVYHRVLAVVRDGVTIGGKKFKFLGFSASQLREHSLWMFAG 494
Query: 250 RYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKT 309
+TA IR WMG+F N+AK AAR+GQSFSSS+ +L V DE+ + D+ T
Sbjct: 495 AGSVTAESIRAWMGDFGGFTNIAKCAARIGQSFSSSRSSLEVLEDELSSVEDIYC---GT 551
Query: 310 KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSM 369
+Y FSDGIGK+S FA VA C + PSA QIRY GYKGVVA DPT S KLSLR SM
Sbjct: 552 RYCFSDGIGKISKAFATSVARACNMP-VVPSALQIRYAGYKGVVAVDPTCSTKLSLRPSM 610
Query: 370 RKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 429
K+ SE T LDVL S+Y P +LNRQ I L++TLG+ DE+FE+ Q E ++ LD +L DP
Sbjct: 611 LKFPSERTGLDVLKASQYAPYYLNRQSIILMTTLGVPDEVFERMQNEELKILDEMLRDPQ 670
Query: 430 KAQEALELMSPG-ENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN 488
A E L S G E +I+ +L GYKP EPFL +L FR+ +L LRTK+RI++P
Sbjct: 671 TAIEVLRSSSSGGEVHSIMVAMLQAGYKPAHEPFLRRLLDNFRSLQLYLLRTKSRIYVPK 730
Query: 489 GRSMMGCLDETRTLNYGQVFVQISGA-GYRQ-----LHGESSLFSSSRSRQRFIVQGLVV 542
GR ++GCLDET L+YGQVFVQ+S G R+ L +RS +V G VV
Sbjct: 731 GRCLLGCLDETGVLDYGQVFVQVSPTPGTRRVVDDGLDDARPRRGVTRSESACVVLGKVV 790
Query: 543 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDD 602
V KNPCLHPGD+ VL+AV+VP LHHM+DCVVFPQ+G RPHPNECSGSDLDGD+YFV WD
Sbjct: 791 VTKNPCLHPGDLLVLEAVDVPGLHHMIDCVVFPQRGKRPHPNECSGSDLDGDLYFVTWDK 850
Query: 603 ELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRK 662
L+PP PMDY P + +LDH V +E+++++F + +V+DSLG+I+NAH V AD+E +
Sbjct: 851 SLVPPVTHEPMDYEPGTAAKLDHSVTLEEIQQFFVDSMVHDSLGVISNAHLVHADKELER 910
Query: 663 ARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFR 722
A+ CL+LA S AVDF KTG+PA IP L ++YPDFME K TY SQ+V+GKL+R
Sbjct: 911 AKDPKCLELARLASTAVDFAKTGIPAVIPVDLRPRDYPDFMENEFKSTYTSQSVLGKLYR 970
Query: 723 AVKD----IAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMD 778
+++ + +S + KE+ +D + VDG+E H+ +A K YD KL L+
Sbjct: 971 SLQSNGRIFSQRSSAVAASPKEM-DEEFDRSLIVDGYEQHVAEARLLKELYDTKLERLLR 1029
Query: 779 YYGIKTEAEILTGSIMKMSKSF--TKRRDA-EAIGMAVRALRKEARAWFKEKSGSDTEDD 835
+Y I TEAEI+TG+++ + K+ TKR D + I A+++L KEA WF+ + +
Sbjct: 1030 HYEI-TEAEIVTGNVLCLGKANEKTKRNDTRDRIACAMKSLAKEAGRWFE----AGLNEH 1084
Query: 836 AYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPW---CVYDRLVEIKKDKTSI 886
AKA AWYHVTYHP+ + +G N + LSFPW V ++LV +K+ K+ I
Sbjct: 1085 QLAKACAWYHVTYHPE----FRKGSNVES-LSFPWVVPAVVEKLVSLKRAKSWI 1133
>gi|302812554|ref|XP_002987964.1| hypothetical protein SELMODRAFT_126929 [Selaginella moellendorffii]
gi|300144353|gb|EFJ11038.1| hypothetical protein SELMODRAFT_126929 [Selaginella moellendorffii]
Length = 1052
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/891 (45%), Positives = 552/891 (61%), Gaps = 62/891 (6%)
Query: 17 AYYKESEDR-FVLETGSAYSRSLDLVPI--VGPPDGIALPYEILFKINLLVQNGCVAGPL 73
Y S DR L G +Y+ +L PI + DG LP++I++KIN LVQ+G ++
Sbjct: 202 GYDTSSMDRALTLVAGESYALQQELSPILSITEDDGAPLPFDIVYKINFLVQSGYMSPAS 261
Query: 74 LDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPA 133
+ + L+ + + +S ALDKL + + Y K RS+ P
Sbjct: 262 VTRELFTLLQGFPEKLCLS----ALDKLVSPAGNVSLDAFSTIESYLKCHHRRSELVEP- 316
Query: 134 ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHST 193
D G YV R+ VTP++VY GPE+ SN V R ++ NFLR+SF+DE+ + +++
Sbjct: 317 ---DGGYTYVKRLVVTPTKVYCTGPELERSNGVTRRYKDFAANFLRVSFVDENFETLYAD 373
Query: 194 DLSPRGSSATDITR----TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS 249
+ + I + +Y R+L+ +R+G+ IG +KF+FL FS+SQLRE S WMFA
Sbjct: 374 AVRLPTKVSVQIGLLPEPSSVYHRVLAVVRDGVTIGGKKFKFLGFSASQLREHSLWMFAD 433
Query: 250 RYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKT 309
+TA IR WMG+F N+AK AAR+GQSFSSS+ +L V DE+ + D+ T
Sbjct: 434 AGSVTAESIRAWMGDFGGFTNIAKCAARIGQSFSSSRSSLEVLEDELSSVEDIYC---GT 490
Query: 310 KYVFSDGIGKVSAEFARKVASKCGLKDNPP---SAFQIRYGGYKGVVAADPTSSKKLSLR 366
+Y FSDG+GK+S FA VA C N P SA QIRY GYKGVVA DPT S KLSLR
Sbjct: 491 RYCFSDGVGKISKAFATSVARAC----NMPVVLSALQIRYAGYKGVVAVDPTCSTKLSLR 546
Query: 367 DSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT 426
SM K+ SE T LDVL S+Y P +LNRQ I L++TLG+ DE+FE+ Q+E ++ LD +L+
Sbjct: 547 PSMLKFPSERTGLDVLKASQYAPYYLNRQSIILMTTLGVPDEVFERMQKEELKILDEMLS 606
Query: 427 DPLKAQEALELMSPG-ENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 485
DP A E L S G E +I+ +L GYKP EPFL +L FR+ +L LRTK+RI+
Sbjct: 607 DPQTAIEVLRSSSSGGEAHSIMVAMLQAGYKPAHEPFLRRLLDNFRSLQLYLLRTKSRIY 666
Query: 486 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 545
+P GR ++GCLDET L+YGQVFVQ+ +RS +V G VVV K
Sbjct: 667 VPKGRCLLGCLDETGVLDYGQVFVQVG---------------VTRSESACVVLGKVVVTK 711
Query: 546 NPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
NPCLHPGD+ VL+AV+VP LHHM+DCVVFPQ+G RPHPNECSGSDLDGD+YFV WD L+
Sbjct: 712 NPCLHPGDLLVLEAVDVPGLHHMIDCVVFPQRGKRPHPNECSGSDLDGDLYFVTWDKSLV 771
Query: 606 PPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARS 665
PP PMDY P + +LDH V +E+++ +F + +V+DSLG+I+NAH V AD+E +A+
Sbjct: 772 PPVTHEPMDYEPGTAAKLDHSVTLEEIQRFFVDSMVHDSLGVISNAHLVHADKELERAKD 831
Query: 666 EPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVK 725
CL+LA S AVDF KTG+PA IP L ++YPDFME K TY SQ+V+GKL+R+++
Sbjct: 832 PKCLELARLASTAVDFAKTGIPAVIPVDLRPRDYPDFMENEFKSTYTSQSVLGKLYRSLQ 891
Query: 726 D----IAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYG 781
+ +S + KE+ + +D + VDG+E H+ +A K YD KL L+ +Y
Sbjct: 892 SNGRIFSQRSSAVAASPKEM-DQEFDRSLTVDGYEQHVSEARSLKELYDTKLERLLRHYE 950
Query: 782 IKTEAEILTGSIMKMSKSF--TKRRDA-EAIGMAVRALRKEARAWFKEKSGSDTEDDAYA 838
I TEAEI+TG+++ + K+ TKR D + I A+++L KEA WF+ + + A
Sbjct: 951 I-TEAEIVTGNVLCLGKANEKTKRNDTRDRIACAMKSLAKEAGRWFE----AGLNEHQLA 1005
Query: 839 KASAWYHVTYHPDYWGCYNQGMNRDHFLSFPW---CVYDRLVEIKKDKTSI 886
KA AWYHVTYHP+ + +G N + LSFPW V ++LV +K+ K+ I
Sbjct: 1006 KACAWYHVTYHPE----FRKGSNVES-LSFPWVVPAVVEKLVSLKRAKSWI 1051
>gi|15237051|ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
gi|75318859|sp|O82504.1|RDR2_ARATH RecName: Full=RNA-dependent RNA polymerase 2; Short=AtRDRP2; AltName:
Full=Protein SILENCING MOVEMENT DEFICIENT 1; AltName:
Full=RNA-directed RNA polymerase 2
gi|3600048|gb|AAC35535.1| similar to hypothetical proteins in Schizosaccharomyces pombe
(GB:Z98533) and C. elegans (GB:Z48334 and Z78419)
[Arabidopsis thaliana]
gi|4850292|emb|CAB43048.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|7267812|emb|CAB81214.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|332657576|gb|AEE82976.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
Length = 1133
Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/885 (43%), Positives = 545/885 (61%), Gaps = 30/885 (3%)
Query: 11 DFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPD-GIALPYEILFKINLLVQNGCV 69
D YY+E G ++ + +VP++ G+ PYEILF++N LV +
Sbjct: 249 DIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQKI 308
Query: 70 AGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTS-RSK 128
+ L ++ L+ R +S+ L KL+ CY+P ++ Q + + +
Sbjct: 309 S--LFAASDMELIKILRG-MSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHS 365
Query: 129 PSSPAISL-DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDL 187
P+S L + ++ R VTPS++Y GPE+ +N V+++F + +F+R++F++ED
Sbjct: 366 PASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDW 425
Query: 188 DKIHSTDLSPRGSSATDI--TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAW 245
K+ + LS + +RT IY R+LS L GI +G ++FEFLAFS+SQLR +S W
Sbjct: 426 SKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVW 485
Query: 246 MFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE 305
MFAS + A +IREWMG FR+IR+++K AAR+GQ FS+S++TL V ++E IPD+++
Sbjct: 486 MFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVT 545
Query: 306 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL 365
Y FSDGIGK+S FA++VA KCGL + PSAFQIRYGGYKGV+A D +S +KLSL
Sbjct: 546 TDGADYCFSDGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVIAVDRSSFRKLSL 604
Query: 366 RDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL 425
RDSM K++S L+V W++ PCFLNR++I LLSTLGI D +FE Q + L +L
Sbjct: 605 RDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNML 664
Query: 426 TDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 485
D A L+ +S + N+L ++L+ GY P +EP+LSMML+ S+L EL+++ RI
Sbjct: 665 EDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRIL 724
Query: 486 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 545
+P GR ++GC+DE L YGQV+V+++ + S F + +V G VVV K
Sbjct: 725 VPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKI-DEETSVVIGKVVVTK 783
Query: 546 NPCLHPGDVRVLKAVNVPALHH--MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
NPCLHPGD+RVL A+ +DC++FPQKG RPHPNECSG DLDGD +FV WD++
Sbjct: 784 NPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEK 843
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
+IP + DPPMDY ++ +DHDV +E++ ++F +Y+++D+LG+I+ AH V ADR+P KA
Sbjct: 844 IIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKA 903
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRA 723
RS+ CL+LA S AVDF KTG PAE+P L +E+PDF+E+ +KPTY S++V GKL+RA
Sbjct: 904 RSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRA 963
Query: 724 VKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIK 783
VK VA YD +E GFE I+ A H+ Y KL +LM YYG
Sbjct: 964 VKSSLAQRKPEAESEDTVA---YDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAA 1020
Query: 784 TEAEILTGSIMKMSKSFTKRRD------AEAIGMAVRALRKEARAWFKEKSGSDTEDDAY 837
E EILTG I+K + + R + + I ++V+ L KEA WF EKS D E
Sbjct: 1021 NEEEILTG-ILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWF-EKSCED-EQQKK 1077
Query: 838 AKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKD 882
ASAWY+VTY+P N + FLSFPW V D L++IK +
Sbjct: 1078 KLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIKAE 1116
>gi|125541045|gb|EAY87440.1| hypothetical protein OsI_08849 [Oryza sativa Indica Group]
Length = 1067
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 319/515 (61%), Positives = 392/515 (76%), Gaps = 8/515 (1%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGS-AYSRSLDLVPIVGPPDGIALPYEILFK 59
+E+P R +LP+ ++ F YY E F +G YS VPIV + PYEILFK
Sbjct: 233 LEVPRRCDLPNIRDYFFYYHEYNHDFECRSGGYPYSSDTRFVPIVKSRGYV--PYEILFK 290
Query: 60 INLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQY 119
IN LVQNG ++GP +D +F+RLV P A V I I+ AL+ + +LK+ C P+ WL++QY
Sbjct: 291 INHLVQNGTLSGPTVDDSFFRLVSP--AFVPIDHIKRALEMMSYLKKTCLNPTSWLSEQY 348
Query: 120 RKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLR 179
K+ SR SP ISLDDGLVYV+RVQVTP++VYF GPEINVSNRV+R+F DI+NFLR
Sbjct: 349 SKFRRSRYVQPSPNISLDDGLVYVYRVQVTPAKVYFYGPEINVSNRVVRNFSSDIENFLR 408
Query: 180 ISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL 239
ISF+DED +K+ +TDLSPR +S D RT +Y R+L L +GI IG + FEFLAFSSSQL
Sbjct: 409 ISFVDEDCEKLRATDLSPRSASGHDANRTALYKRVLLVLSDGITIGGKNFEFLAFSSSQL 468
Query: 240 RESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEII 299
R++SAWMFASR GL A++IR WMG+FR IRNVAKYAARLGQSFSSS ETL V E+E I
Sbjct: 469 RDNSAWMFASRQGLAASDIRTWMGDFRNIRNVAKYAARLGQSFSSSTETLKVQKYEVEEI 528
Query: 300 PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS 359
D+K T++VFSDGIGK+S+ FA +VA KC LK PSAFQIRYGGYKGVVA DPTS
Sbjct: 529 SDIK---NGTQHVFSDGIGKISSAFANEVAMKCNLKRFAPSAFQIRYGGYKGVVAVDPTS 585
Query: 360 SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 419
KLSLR SM K++S+ +DVLA+SKYQP FLNRQLI+LLSTLG+ D +FE+KQ EAV
Sbjct: 586 RWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFLNRQLITLLSTLGVRDSVFEQKQEEAVN 645
Query: 420 QLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 479
QL+ ++TDP A EA+ELM GE TN +KELL+CGY+PD EP+LSM+LQTFRASKLLEL+
Sbjct: 646 QLNKMVTDPQAAIEAIELMPMGEITNAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELK 705
Query: 480 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGA 514
TK+RI IP GR+MMGCLDETRTL YGQVF++ +
Sbjct: 706 TKSRILIPKGRAMMGCLDETRTLKYGQVFIRATSG 740
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 210/317 (66%), Positives = 254/317 (80%), Gaps = 6/317 (1%)
Query: 580 RPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNY 639
RPHPNECSGSDLDGDIYFV WD LIPP+ PMDYTPA + LDHDV IE+VEEYFTNY
Sbjct: 746 RPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVEEYFTNY 805
Query: 640 IVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEY 699
IVN+SLG+IANAH VFAD+E KA S PC++LA+ FSIAVDFPKTGVPA IPP L+VKEY
Sbjct: 806 IVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEY 865
Query: 700 PDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHI 759
PDFMEK DK TYES+ VIGKL+R +K PH I+ FT+EVARRSYD DM VDG+ED+I
Sbjct: 866 PDFMEKLDKVTYESKGVIGKLYREIKKHTPH---IKHFTREVARRSYDTDMIVDGYEDYI 922
Query: 760 DDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKE 819
+A+ K YD+KLGNLMD+YGIK+EAEI++G I+KM+K+FTK+ DA+AI +AVR+LRKE
Sbjct: 923 TEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAVRSLRKE 982
Query: 820 ARAWFKEKSGSDT---EDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRL 876
AR+ F E S D D + AKASAWYHVTYHP++WGCYN+G R HF+SFPWC+Y++L
Sbjct: 983 ARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFISFPWCIYEKL 1042
Query: 877 VEIKKDKTSIGNAFPAL 893
+ IK+ + + P L
Sbjct: 1043 LRIKQRRKFVRKMQPEL 1059
>gi|115448543|ref|NP_001048051.1| Os02g0736200 [Oryza sativa Japonica Group]
gi|113537582|dbj|BAF09965.1| Os02g0736200, partial [Oryza sativa Japonica Group]
Length = 476
Score = 630 bits (1625), Expect = e-177, Method: Compositional matrix adjust.
Identities = 308/469 (65%), Positives = 365/469 (77%), Gaps = 17/469 (3%)
Query: 140 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 199
L Y+ + S VYF GPEINVSNRV+R+F DI+NFLRISF+DED +K+ +TDLSPR
Sbjct: 23 LTYLWMMDWFMSTVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRS 82
Query: 200 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 259
+S D RT +Y R+LS L +GI IG + FEFLAFSSSQLR++SAWMFASR GL A++IR
Sbjct: 83 ASGHDANRTALYKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIR 142
Query: 260 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 319
WMG+FR IRNVAKYAARLGQSFSSS ETL V E+E I D+K T++VFSDGIGK
Sbjct: 143 TWMGDFRNIRNVAKYAARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGK 199
Query: 320 VSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKL 379
+S+ FA +VA KC LK PSAFQIRYGGYKGVVA DPTS KLSLR SM K++S+ +
Sbjct: 200 ISSAFANEVAMKCNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITV 259
Query: 380 DVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMS 439
DVLA+SKYQP FLNRQLI+LLSTLG+ D +FE+KQ EAV QL+ ++TDP A EA+ELM
Sbjct: 260 DVLAYSKYQPGFLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMP 319
Query: 440 PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET 499
GE TN +KELL+CGY+PD EP+LSM+LQTFRASKLLEL+TK+RI IP GR+MMGCLDET
Sbjct: 320 MGEITNAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDET 379
Query: 500 RTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 559
RTL YGQVF++ + S RF V G VV+AKNPCLHPGD+R+L A
Sbjct: 380 RTLKYGQVFIRAT--------------SGVNDNDRFTVTGKVVIAKNPCLHPGDIRILHA 425
Query: 560 VNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQ 608
V+VP LHHM +CVVFPQ+G RPHPNECSGSDLDGDIYFV WD LIPP+
Sbjct: 426 VDVPVLHHMFNCVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPR 474
>gi|297737619|emb|CBI26820.3| unnamed protein product [Vitis vinifera]
Length = 919
Score = 613 bits (1581), Expect = e-172, Method: Compositional matrix adjust.
Identities = 300/434 (69%), Positives = 339/434 (78%), Gaps = 45/434 (10%)
Query: 475 LLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQR 534
LLELRTKTRIF+PNG S
Sbjct: 525 LLELRTKTRIFVPNG--------------------------------------SGSHHDN 546
Query: 535 FIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGD 594
FI++G +VVAKNPCLHPGDVRVL AVNVP LHHMVDCVVFPQKG RPHPNECSGSDLDGD
Sbjct: 547 FILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGD 606
Query: 595 IYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTV 654
IYFVCWD +LIPPQQ PMDYTPA + LDHDV IE+VEEYFTNYIVNDSLGIIANAHTV
Sbjct: 607 IYFVCWDRDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTV 666
Query: 655 FADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQ 714
FAD+E KA +PC +LA+ FSIAVDFPKTGVPAEIP +L VKEYPDFMEK DKPTYESQ
Sbjct: 667 FADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQ 726
Query: 715 NVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLG 774
+VIGKLFR VKDIAPH IR FT++VAR+SYDPDMEV GFED++ DA Y+K YDYKLG
Sbjct: 727 SVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLG 786
Query: 775 NLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTE- 833
NLMDYYGIKTE+EIL+GSIM+MSKSF +R+DAEAIG+AV++LRKEAR WF K GS+T+
Sbjct: 787 NLMDYYGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFN-KMGSETDS 845
Query: 834 --DDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNA-- 889
DD YAKASAWYHVTYHPDYWGCYN+GM+RDHFLSFPWCVYD+L+ K+ K S G +
Sbjct: 846 EADDVYAKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMS-GRSLH 904
Query: 890 FPALEQQFRQGLRM 903
+LE++ QGLR+
Sbjct: 905 LSSLERRLSQGLRL 918
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 242/382 (63%), Positives = 292/382 (76%), Gaps = 38/382 (9%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKI 60
+ELPY +LP+F+ENFAYYKE++ +F+LE+GS+YS +L LVPI+GPP G +LP++ILFKI
Sbjct: 183 LELPYGSQLPNFRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKI 242
Query: 61 NLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR 120
N LVQNGC++GP LD++F+RLVDP R P+S IEHAL+KLYHLKECCYEP RWL++QYR
Sbjct: 243 NTLVQNGCLSGPTLDTSFFRLVDPERFPISF--IEHALEKLYHLKECCYEPVRWLSEQYR 300
Query: 121 KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRI 180
Y+ + SPAISLD GLVYV RVQ+TP
Sbjct: 301 TYV-KKPVAGSPAISLDTGLVYVRRVQITPY----------------------------- 330
Query: 181 SFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLR 240
E+L+KIHST +SPR S + RT +Y RILS L+NGI+IGD+KF+FLAFSSSQLR
Sbjct: 331 ----ENLEKIHSTVISPRMSK--EGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLR 384
Query: 241 ESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIP 300
++SAWMFASR GLTAAEIR WMG+F +IRNVAKYAARLGQSFSSSKETL V DEIE IP
Sbjct: 385 DNSAWMFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIP 444
Query: 301 DVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS 360
D++I G+T YVFSDGIGK+S + A +VA KCG K + PSAFQIRYGGYKGVVA DPTSS
Sbjct: 445 DIEIHKGRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSS 504
Query: 361 KKLSLRDSMRKYESELTKLDVL 382
+KLSLR SM KYES+ T LD+L
Sbjct: 505 RKLSLRKSMFKYESDNTNLDLL 526
>gi|296082033|emb|CBI21038.3| unnamed protein product [Vitis vinifera]
Length = 1035
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 350/878 (39%), Positives = 507/878 (57%), Gaps = 65/878 (7%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 110
+ + ++F +N ++ G + L F+ L+ + ++I+ ++H C Y
Sbjct: 167 GIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQQKDINIAALKHI---------CSYR 217
Query: 111 PSRWLTDQYR------KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSN 164
+ D Y+ K++ K LDD +V V R+ +TPS+ Y PE+ +SN
Sbjct: 218 HP--VFDAYQRLKLVHKWLLKNPKLLKSPKELDD-IVEVRRLVITPSKAYCLPPEVELSN 274
Query: 165 RVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDIT-------RTRIYTRILST 217
RVLR+++ D FLR++F+DE + I++ L+ + + +TR++ R+ +
Sbjct: 275 RVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNSFPQKTRVFKRVKTI 334
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAAR 277
L +G + RK+ FLAFSS+QLR+ SAW FA + I+ WMG F RNVAK AAR
Sbjct: 335 LTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMGKFTN-RNVAKCAAR 393
Query: 278 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 337
+GQ FSS+ T+ V E++ +PD+K + Y FSDGIGK+ + A +VA K L +
Sbjct: 394 MGQCFSSTYATVEVPSWEVKELPDIK----RNGYDFSDGIGKIVPDLAMEVAEKLKL-EG 448
Query: 338 PPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQ 395
PSA+QIRY G KGVVA P+ + +LS R SM K+ S+ T L++ +W+++QP FLNRQ
Sbjct: 449 TPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTRFQPGFLNRQ 508
Query: 396 LISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGY 455
+++LLS L + D+IF K Q + +L+ +LTD A + L + S E N +L G+
Sbjct: 509 IVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVL-IASCAEQGNTAAIMLSAGF 567
Query: 456 KPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG 515
KP EP L ML RA++ LR K RIF+P+GR +MGCLDE L GQ F+Q+S
Sbjct: 568 KPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSSPS 627
Query: 516 YRQL---HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCV 572
HG S FS+ ++ + +++G+V +AKNPCLHPGDVR+L+AV+ P L H+VDC+
Sbjct: 628 LENCFLKHG--SRFSAQKNLK--VIKGIVAIAKNPCLHPGDVRILEAVDAPGLEHLVDCL 683
Query: 573 VFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP--QQDPPMDYTPAQSMQLDHDVQIE 630
VFPQKG RPH NE SGSDLDGD+YFV W++ LIPP Q PPM Y A++ L +V
Sbjct: 684 VFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALAREVTSL 743
Query: 631 DVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEI 690
D+ ++FT +VN++LG I NAH V ADR A E CL LAE+ + AVDFPKTG +
Sbjct: 744 DIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFPKTGKLVTL 803
Query: 691 PPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPH---TSCIRLFTKEVARRSYD 747
PP+L K YPDFM K + TY S ++GK++R +KD S ++F + + +D
Sbjct: 804 PPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGAD--KVPFD 861
Query: 748 PDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD-- 805
D+ + G D I+DA HK +YD +L L+ Y +K E E++TG + M K ++++
Sbjct: 862 EDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRKQGEL 921
Query: 806 AEAIGMAVRALRKEARAWFKEKSGSD----TEDDAY----AKASAWYHVTYHPDYWGCYN 857
E + A +L+KE R F EK SD T+D+ KASAWY VTYHP +
Sbjct: 922 TERLKHAYSSLKKEFRQIF-EKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVKKSL 980
Query: 858 QGMNRDH------FLSFPWCVYDRLVEIKKDKTSIGNA 889
+ N D LSF W D L IK + GN
Sbjct: 981 ELQNPDEVFGERVMLSFAWITADYLARIKIRRKGTGNV 1018
>gi|255548928|ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
Length = 1203
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 361/877 (41%), Positives = 504/877 (57%), Gaps = 79/877 (9%)
Query: 54 YEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH-------ALDKLYHLKE 106
+ ++F +N ++ G L +F+ L+ V+I+ + H D LK
Sbjct: 330 FNLMFLVNAVMHKGIFNQHQLSDSFFDLLRNQPLDVNIAALRHICSYKHPVFDAHKRLKA 389
Query: 107 CCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRV 166
+WL + + +S+ LDD +V + R+ +TP+R Y PE+ +SNRV
Sbjct: 390 V----QQWLLKNPKLFRSSKQ--------LDD-IVEIRRLAITPTRAYCLPPEVELSNRV 436
Query: 167 LRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSAT-DIT------RTRIYTRILSTLR 219
LR ++ D FLR++F+DE L +++ L+ + DIT +TRI+ R+ S L
Sbjct: 437 LRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNSFSQKTRIFKRVKSILT 496
Query: 220 NGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLG 279
+G + RK+ FLAFSS+QLR+ SAW FA + ++IR WMG F RN+AK AAR+G
Sbjct: 497 DGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMGKFTN-RNIAKCAARMG 555
Query: 280 QSFSSSKETLSVHMDE-IEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNP 338
Q FSS+ T+ V E I +PD++ + Y+FSDGIG ++ + A++VA K L+ NP
Sbjct: 556 QCFSSTYATVEVPSAEAILDLPDIE----RNNYIFSDGIGMITPDLAKEVAEKLKLEVNP 611
Query: 339 PSAFQIRYGGYKGVVAADPT--SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQL 396
P A+QIRY G KGVVA P +LSLR SM K+ S T L++ +W+++QP FLNRQ+
Sbjct: 612 PCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWTRFQPGFLNRQI 671
Query: 397 ISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYK 456
I+LLSTL + DEIF K Q V +L+ + D A + + S E N +L G+
Sbjct: 672 ITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVT-ASCAEQGNTAAIMLSAGFN 730
Query: 457 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGY 516
P EP L ML RA++L LR KTRIF+P+GR +MGCLDE L +GQ F+Q+S
Sbjct: 731 PKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQCFIQVSNPSL 790
Query: 517 RQL---HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVV 573
HG S FS S+ + + +V+G VVVAKNPCLHPGD+R+L+AV+ P LHH+ DC+V
Sbjct: 791 ESCFWKHG--SRFSESKKKLQ-VVKGTVVVAKNPCLHPGDIRILEAVDAPELHHLHDCLV 847
Query: 574 FPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDHDVQIED 631
FPQKG RPH NE SGSDLDGD+YFV WD+ LIPP + PM Y A++ QL+ V +D
Sbjct: 848 FPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLNRPVNHQD 907
Query: 632 VEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIP 691
+ ++F +VN++LG I NAH V AD A E C++LAE + AVDFPKTG +P
Sbjct: 908 IIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKTGKLVTMP 967
Query: 692 PHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVK----------DIAPHTSCIRLFTKEV 741
PHL K YPDFM K D +Y S ++G+L+R VK D A +S + L ++
Sbjct: 968 PHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSELNLVRGDI 1027
Query: 742 ARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFT 801
YD D+EV G D+I DA K +YD +L L+ Y +K E E++TG I M K +
Sbjct: 1028 P---YDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWSMPKCNS 1084
Query: 802 KRRD--AEAIGMAVRALRKEARAWFKEKSGSD----TEDDAY----AKASAWYHVTYHPD 851
+++ E + + +L+KE R F EK SD TED+ KASAWY V YHP
Sbjct: 1085 RKQGELKERLKQSYHSLKKEFRQVF-EKMDSDFEQLTEDEKNLLYEQKASAWYQVAYHPK 1143
Query: 852 YWGCYNQGMNRDH--------FLSFPWCVYDRLVEIK 880
+ N+ M LSF W D L IK
Sbjct: 1144 W---VNKSMELQEPDAAGCASMLSFAWIAADYLARIK 1177
>gi|224141893|ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1200
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 349/880 (39%), Positives = 507/880 (57%), Gaps = 63/880 (7%)
Query: 48 DGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKEC 107
+GIA +E+LF +N ++ G L ++F+ L+ V++S ++H C
Sbjct: 329 EGIA--FEVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQHTEVNVSALKHI---------C 377
Query: 108 CYEPSRWLTDQYRK------YMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEIN 161
Y R + + YR+ ++ L D +V + R+ +TP++ Y PE+
Sbjct: 378 TYR--RPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGD-VVEIRRLVITPTKAYCLPPEVE 434
Query: 162 VSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSAT-DIT------RTRIYTRI 214
+SNRVLR ++ D FLR++F+DE L +++S L+ + DIT +TRI+ R+
Sbjct: 435 LSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSNSFPQKTRIFKRV 494
Query: 215 LSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKY 274
S L G + R++ FLAFS++QLR+ SAW F+ ++ +++ WMG F RN+AK
Sbjct: 495 RSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKSWMGKFTN-RNIAKC 553
Query: 275 AARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCG 333
AAR+GQ FSS+ T+ V +E+ +PD++ + YVFSDGIG ++ + AR+VA K
Sbjct: 554 AARMGQCFSSTYATIEVPPEEVNSDLPDIE----RNGYVFSDGIGIITPDLAREVAEKLK 609
Query: 334 LKDNPPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCF 391
L +PP A+QIRY G KGVVA P +LSLR SM K++S T L++ +W+++QP F
Sbjct: 610 LDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEICSWTRFQPGF 669
Query: 392 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL 451
LNRQ+I+LLSTL + D +F K Q V +L+ + + A + L S + N+ +L
Sbjct: 670 LNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLT-ASCADQGNVAAIML 728
Query: 452 ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI 511
G+KPD EP L ML RA++L +LR KTRIF+P+GR +MGCLDE L GQ F+Q+
Sbjct: 729 SAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLEQGQCFIQV 788
Query: 512 SGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDC 571
S + + + S + +++G VV+AKNPCLHPGDVRVL+AV+VP LHH+ DC
Sbjct: 789 SNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVPGLHHLYDC 848
Query: 572 VVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDHDVQI 629
+VFPQKG RPH NE SGSDLDGD+YFV WD+ LIPP + PM Y A++ L V
Sbjct: 849 LVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKLLARPVNH 908
Query: 630 EDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAE 689
+D+ E+F +VND+LG I NAH V AD A + CL LAE + AVDFPKTG
Sbjct: 909 QDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDFPKTGKVVS 968
Query: 690 IPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDI----APHTSCIRLFTKEVARRS 745
+PP+L K YPDFM K + +Y+S+ ++G+L+R +KD +S + L ++
Sbjct: 969 MPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLVPGDIP--- 1025
Query: 746 YDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD 805
YD D+EV G D+I DA K +YD +L L+ Y +K E E++TG I M K ++ R+
Sbjct: 1026 YDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPK-YSSRKQ 1084
Query: 806 AEA---IGMAVRALRKEARAWFKE-----KSGSDTEDDAY--AKASAWYHVTYHPDYWGC 855
E + + +L+KE R F++ + D E + KASAWY V YHP +W
Sbjct: 1085 GELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHP-HWVK 1143
Query: 856 YN------QGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNA 889
+ G LSF W D L IK GN
Sbjct: 1144 KSLELQDPDGAGTSVMLSFAWIAADYLARIKIRHRETGNV 1183
>gi|225430281|ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
Length = 1197
Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust.
Identities = 350/878 (39%), Positives = 507/878 (57%), Gaps = 65/878 (7%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 110
+ + ++F +N ++ G + L F+ L+ + ++I+ ++H C Y
Sbjct: 329 GIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQQKDINIAALKHI---------CSYR 379
Query: 111 PSRWLTDQYR------KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSN 164
+ D Y+ K++ K LDD +V V R+ +TPS+ Y PE+ +SN
Sbjct: 380 HP--VFDAYQRLKLVHKWLLKNPKLLKSPKELDD-IVEVRRLVITPSKAYCLPPEVELSN 436
Query: 165 RVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDIT-------RTRIYTRILST 217
RVLR+++ D FLR++F+DE + I++ L+ + + +TR++ R+ +
Sbjct: 437 RVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNSFPQKTRVFKRVKTI 496
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAAR 277
L +G + RK+ FLAFSS+QLR+ SAW FA + I+ WMG F RNVAK AAR
Sbjct: 497 LTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMGKFTN-RNVAKCAAR 555
Query: 278 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 337
+GQ FSS+ T+ V E++ +PD+K + Y FSDGIGK+ + A +VA K L +
Sbjct: 556 MGQCFSSTYATVEVPSWEVKELPDIK----RNGYDFSDGIGKIVPDLAMEVAEKLKL-EG 610
Query: 338 PPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQ 395
PSA+QIRY G KGVVA P+ + +LS R SM K+ S+ T L++ +W+++QP FLNRQ
Sbjct: 611 TPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTRFQPGFLNRQ 670
Query: 396 LISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGY 455
+++LLS L + D+IF K Q + +L+ +LTD A + L + S E N +L G+
Sbjct: 671 IVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVL-IASCAEQGNTAAIMLSAGF 729
Query: 456 KPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG 515
KP EP L ML RA++ LR K RIF+P+GR +MGCLDE L GQ F+Q+S
Sbjct: 730 KPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSSPS 789
Query: 516 YRQL---HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCV 572
HG S FS+ ++ + +++G+V +AKNPCLHPGDVR+L+AV+ P L H+VDC+
Sbjct: 790 LENCFLKHG--SRFSAQKNLK--VIKGIVAIAKNPCLHPGDVRILEAVDAPGLEHLVDCL 845
Query: 573 VFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP--QQDPPMDYTPAQSMQLDHDVQIE 630
VFPQKG RPH NE SGSDLDGD+YFV W++ LIPP Q PPM Y A++ L +V
Sbjct: 846 VFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALAREVTSL 905
Query: 631 DVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEI 690
D+ ++FT +VN++LG I NAH V ADR A E CL LAE+ + AVDFPKTG +
Sbjct: 906 DIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFPKTGKLVTL 965
Query: 691 PPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPH---TSCIRLFTKEVARRSYD 747
PP+L K YPDFM K + TY S ++GK++R +KD S ++F + + +D
Sbjct: 966 PPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGAD--KVPFD 1023
Query: 748 PDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD-- 805
D+ + G D I+DA HK +YD +L L+ Y +K E E++TG + M K ++++
Sbjct: 1024 EDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRKQGEL 1083
Query: 806 AEAIGMAVRALRKEARAWFKEKSGSD----TEDDAY----AKASAWYHVTYHPDYWGCYN 857
E + A +L+KE R F EK SD T+D+ KASAWY VTYHP +
Sbjct: 1084 TERLKHAYSSLKKEFRQIF-EKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVKKSL 1142
Query: 858 QGMNRDH------FLSFPWCVYDRLVEIKKDKTSIGNA 889
+ N D LSF W D L IK + GN
Sbjct: 1143 ELQNPDEVFGERVMLSFAWITADYLARIKIRRKGTGNV 1180
>gi|242057591|ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
gi|241929916|gb|EES03061.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
Length = 1207
Score = 596 bits (1536), Expect = e-167, Method: Compositional matrix adjust.
Identities = 355/877 (40%), Positives = 498/877 (56%), Gaps = 54/877 (6%)
Query: 36 RSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIE 95
R DL V +G+ P +LF +N LV G + L F+ L+ V+++ +
Sbjct: 327 RMQDLFFCVQHSEGLKFP--VLFLVNALVHKGVINQHHLTPEFFGLLQRKEDDVNVAALR 384
Query: 96 HALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYF 155
+ + + C L D+ +Y P + D V R+ VTP++ Y
Sbjct: 385 EFWGDKFPVFDACGRLKN-LQDRVARY------PKLLRNKIGDDNSEVRRLVVTPTKAYC 437
Query: 156 CGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS-------SATDITRT 208
PE+ SNRV+RH+R D FLR++F+DE + ++S L+ + S + + +T
Sbjct: 438 LPPEVERSNRVIRHYREVTDRFLRVTFMDEGMQLLNSNVLNFSAAQIVKDLMSNSFLHKT 497
Query: 209 RIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREI 268
+Y RI + L G + RK+ FLAFSS+QLR+ SAW FA T IR+WMG F
Sbjct: 498 TVYKRIKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDRMRTVETIRKWMGRFTS- 556
Query: 269 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV 328
+NVAK+AAR+GQ FSS+ T+ + E+ + E+ + Y+FSDGIGK++ + A +V
Sbjct: 557 KNVAKHAARMGQCFSSTYATVVMQPHEVN---ECLEEVERNGYIFSDGIGKITCDLALEV 613
Query: 329 ASKCGLKDNPPSAFQIRYGGYKGVVAA--DPTSSKKLSLRDSMRKYESELTKLDVLAWSK 386
A K L DNPPSA+QIRY G+KGV+A +LSLR SM K+ES L+V++W+K
Sbjct: 614 AQKLRLTDNPPSAYQIRYAGFKGVIAVWEGENDGIRLSLRPSMHKFESNHNVLEVVSWTK 673
Query: 387 YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI 446
+QP FLNRQ+I+LLS+L + D IF + Q + L+ IL+D A + + S E N
Sbjct: 674 FQPGFLNRQIITLLSSLNVPDAIFSQMQEAMLSNLNNILSDTDVAFDIVT-TSCAEQGNT 732
Query: 447 LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQ 506
+L G P EP L ML R+S+LL L KTRIF+P GR +MGCLDE L GQ
Sbjct: 733 AALMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPKGRWLMGCLDELGILEQGQ 792
Query: 507 VFVQISGAGYRQ-LHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 565
F++ S L FSS+ IV G +V+AKNPCLHPGDVR+L+AV+VP L
Sbjct: 793 CFIRASSPSLNNCLVKHGPRFSSANKNAETIV-GTIVMAKNPCLHPGDVRILEAVDVPEL 851
Query: 566 HHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQL 623
HH+VDC+VFP+KG RPH NE SGSDLDGD+YFV WD+ LIPP + PMDY+P ++ QL
Sbjct: 852 HHLVDCLVFPKKGERPHANEASGSDLDGDLYFVTWDENLIPPGKKSWNPMDYSPTEAKQL 911
Query: 624 DHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPK 683
V D+ ++F +VN+ LG I+NAH V AD A E C+QLAE + AVDFPK
Sbjct: 912 PRAVSPHDIVDFFLKNMVNEKLGPISNAHVVHADMSEYGAMDEKCIQLAELAATAVDFPK 971
Query: 684 TGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVK-----DIAPHTSCIRLFT 738
TG +PP L K YPDFM K D +Y+S+ ++G+L+R+++ D+ P +C
Sbjct: 972 TGKIVSMPPSLRPKLYPDFMGKEDAISYKSEKILGRLYRSIQEASSGDLVPEETCT---- 1027
Query: 739 KEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSK 798
+ YD DMEV G D + A K +Y+ +L L++ YG++TEAE++T I + K
Sbjct: 1028 --LNDLPYDADMEVPGATDFLSSAWECKCSYETQLNALLNQYGVRTEAELVTEHIWSLPK 1085
Query: 799 SFTKRRD--AEAIGMAVRALRKEARAWFKEKSGSDTE--DDAY-----AKASAWYHVTYH 849
++++ E + A AL K+ R+ F+ TE DD KASAWY VTYH
Sbjct: 1086 YSSRKQGDIKERLKNAYSALHKDFRSIFESFVTDQTEISDDEKIRFYEMKASAWYQVTYH 1145
Query: 850 PDYWGCYNQGMNRDHF------LSFPWCVYDRLVEIK 880
P W ++ M + F LSF W + L IK
Sbjct: 1146 PK-WVQKSREMLKPDFEDMPARLSFAWIGVEHLARIK 1181
>gi|356507732|ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max]
Length = 1204
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 363/879 (41%), Positives = 503/879 (57%), Gaps = 82/879 (9%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 111
+ ++I+F +N +V G L F+ L+ ++++ ++H L K ++
Sbjct: 330 IAFDIMFLVNAIVHKGIFNQHRLSDRFFELLRNQPKELNVAALKH----LCSYKRPVFDA 385
Query: 112 SR-------WLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSN 164
++ WL + Y S+ LDD +V V R+ VTPS+ Y PE+ +SN
Sbjct: 386 TKRLKIVQEWLLRNPKLYQISKQ--------LDD-IVEVRRLVVTPSKAYCIPPEVELSN 436
Query: 165 RVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS-------PRGSSATDITRTRIYTRILST 217
RVLR FR D FLR++F+DE + I+ L+ +S + +T+IY R+ +
Sbjct: 437 RVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSFSQKTKIYKRVKTI 496
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAAR 277
L G RK+ FLAFSS+QLR+ SAW FA + +IR WMG F + RNVAK AAR
Sbjct: 497 LEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAED-KIRCDDIRNWMGKFNQ-RNVAKCAAR 554
Query: 278 LGQSFSSSKETLSVHMDEIE-IIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD 336
+GQ FSS+ T+ V +E+ ++PDV+ + Y+FSDGIG ++ + AR+VA K L D
Sbjct: 555 MGQCFSSTYATVEVAANEVNSMLPDVE----RNNYIFSDGIGVITHDLAREVAEKLKL-D 609
Query: 337 NPPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNR 394
N PSA+QIRY G+KGVVA+ P +LSLR SM K++S L++ AW+++QP FLNR
Sbjct: 610 NVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNILEICAWTRFQPGFLNR 669
Query: 395 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICG 454
Q+I+LLS LG+ DEIF + Q + +L+ +L D A + L S E+ N +L CG
Sbjct: 670 QIITLLSALGVPDEIFWQMQEAMLLKLNQMLVDADIAFDVLT-KSCAEHGNAAAIMLSCG 728
Query: 455 YKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGA 514
+ P EP L ML + RA++L LR K+RIF+ +GR +MG LDE L GQ FVQ+S
Sbjct: 729 FSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTP 788
Query: 515 GYRQL---HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDC 571
HG S FS +++ +V+G VV+AKNPCLHPGDVRVL+AV+ P LHH+ DC
Sbjct: 789 SLENCFSKHG--SRFSETKNLH--VVKGFVVIAKNPCLHPGDVRVLEAVDAPDLHHLNDC 844
Query: 572 VVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDHDVQI 629
+VFPQKG RPH NE SGSDLDGD+YFV WD+ LIPP + PM+Y P +S L V
Sbjct: 845 LVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESKLLTRQVMT 904
Query: 630 EDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAE 689
D+ E+F +VN+ LG I NAH V AD A E C+ LAE + AVDFPKTG
Sbjct: 905 RDIIEFFVRNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGKLVT 964
Query: 690 IPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDI------APHTSCIRLFTKEVAR 743
+PPHL K YPDFM K +Y S ++G+L+R +KD AP+ + T ++
Sbjct: 965 MPPHLKPKLYPDFMGKERHQSYRSNKILGRLYRHIKDAYDEDIEAPY---LNFVTGDIP- 1020
Query: 744 RSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKR 803
YD D+EV G D I DA K +YD +L L+ Y +K E E++TG I M K +++
Sbjct: 1021 --YDKDLEVPGSADFIADAWEQKCSYDGQLSGLIGQYKVKREEEVVTGQIWSMPKYNSRK 1078
Query: 804 RD--AEAIGMAVRALRKEARAWFKEKSGSD----TEDDAY----AKASAWYHVTYHPDYW 853
+ E + + AL+KE R F EK SD +E++ KASAWY VTYHP++
Sbjct: 1079 QGELKERLKHSYSALKKEFRYTF-EKLNSDVGELSEEEKNLLYEQKASAWYQVTYHPEWV 1137
Query: 854 ---------GCYNQ---GMNRDHFLSFPWCVYDRLVEIK 880
NQ + LSFPW D L K
Sbjct: 1138 KKSLDLQDKSSENQEADSLGSTVMLSFPWIAVDYLARTK 1176
>gi|356515444|ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max]
Length = 1204
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 360/879 (40%), Positives = 503/879 (57%), Gaps = 82/879 (9%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 111
+ ++I+F +N +V G L F+ L+ ++++ ++H L K ++
Sbjct: 330 IAFDIMFLVNAIVHKGIFNQHRLSDRFFELLKNQPKELNVAALKH----LCSYKRPVFDA 385
Query: 112 SR-------WLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSN 164
++ WL + Y S+ LDD +V V R+ +TPS+ Y PE+ +SN
Sbjct: 386 TKRLKIVQEWLLRNPKLYQISKQ--------LDD-IVEVRRLVITPSKAYCIPPEVELSN 436
Query: 165 RVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS-------PRGSSATDITRTRIYTRILST 217
RVLR FR D FLR++F+DE + I+ L+ +S + RT+IY R+ +
Sbjct: 437 RVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSFSQRTKIYKRVKTI 496
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAAR 277
L G RK+ FLAFSS+QLR+ SAW FA + +IR WMG F + RNVAK AAR
Sbjct: 497 LEQGFYFCGRKYSFLAFSSNQLRDRSAWFFAED-KIRCDDIRNWMGKFNQ-RNVAKCAAR 554
Query: 278 LGQSFSSSKETLSVHMDEIE-IIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD 336
+GQ FSS+ T+ V +E+ ++PDV+ + Y+FSDGIG ++ + AR+VA K L D
Sbjct: 555 MGQCFSSTYATVEVAANEVNSMLPDVE----RNNYIFSDGIGVITHDLAREVAEKLKL-D 609
Query: 337 NPPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNR 394
N PSA+QIRY G+KGVVA+ P +LSLR SM K++S L++ AW+++QP FLNR
Sbjct: 610 NVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNILEICAWTRFQPGFLNR 669
Query: 395 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICG 454
Q+I+LLS LG+ DE+F + Q + +L+ +L D A + L S E+ N +L CG
Sbjct: 670 QIITLLSALGVPDEVFWQMQEAMLLKLNQMLVDADIAFDVLT-KSCAEHGNAAAIMLSCG 728
Query: 455 YKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGA 514
+ P EP L ML + RA++L LR K+RIF+ +GR +MG LDE+ L GQ FVQ+S
Sbjct: 729 FSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDESGVLEQGQCFVQVSTP 788
Query: 515 GYRQL---HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDC 571
HG S FS +++ +V+G V++AKNPCLHPGDVRVL+AV+ P LHH+ DC
Sbjct: 789 SLENCFSKHG--SRFSETKNLH--VVKGFVIIAKNPCLHPGDVRVLEAVDAPDLHHLNDC 844
Query: 572 VVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDHDVQI 629
+VFPQKG RPH NE SGSDLDGD+YFV WD+ LIPP + PM+Y P +S V
Sbjct: 845 LVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESKLKTRQVMT 904
Query: 630 EDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAE 689
D+ E+F +VN+ LG I NAH V AD A E C+ LAE + AVDFPKTG
Sbjct: 905 RDIIEFFVRNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGKLVT 964
Query: 690 IPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDI------APHTSCIRLFTKEVAR 743
+PPHL K YPDFM K +Y S+ ++G+L+R +KD AP+ + T ++
Sbjct: 965 MPPHLKPKLYPDFMGKERHQSYRSKKILGRLYRRIKDAYDEDIDAPY---LNFVTGDIP- 1020
Query: 744 RSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKR 803
YD D+EV G D I DA K +YD +L L+ Y +K E E++TG I M K +++
Sbjct: 1021 --YDKDLEVPGSADFIADAWEQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNSRK 1078
Query: 804 RD--AEAIGMAVRALRKEARAWFKEKSGSDT------EDDAY--AKASAWYHVTYHPDYW 853
+ E + + AL+KE R F EK SD E + + KASAWY VTYHP++
Sbjct: 1079 QGELKERLKHSYSALKKEFRHTF-EKLNSDVGELSEEEKNLFYEQKASAWYQVTYHPEWV 1137
Query: 854 ---------GCYNQ---GMNRDHFLSFPWCVYDRLVEIK 880
NQ + LSFPW D L K
Sbjct: 1138 KKSLDLQDKSSENQEADSLGSTVMLSFPWIAVDYLARTK 1176
>gi|295885030|gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
Length = 1196
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 345/863 (39%), Positives = 503/863 (58%), Gaps = 51/863 (5%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 110
+P+EI+F +N ++ G L +F+RL+ V+++ ++H +Y + Y+
Sbjct: 326 GIPFEIMFLVNAVLHKGIFNQHQLSMDFFRLLRNQSMEVNVAALKH----IYSYRHPVYD 381
Query: 111 PSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF 170
L D + + + SP LDD +V + R+ +TP++ Y PE+ +SNRVLR +
Sbjct: 382 AYERLKDVHDWLLKNPKLFKSPP-QLDD-IVEIRRLVITPTKAYCLLPEVELSNRVLRKY 439
Query: 171 RRDIDNFLRISFIDEDLDKIHSTDLSPRGSSAT-DIT------RTRIYTRILSTLRNGIL 223
+ D FLR++F+DE + +++ L+ ++ D+T +T ++ R+ S L +G
Sbjct: 440 KDVADRFLRVTFMDEGMQIMNANVLTYYNAAIVRDVTSTSFSQKTGVFKRVKSILTDGFY 499
Query: 224 IGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFS 283
+ RK+ FLAFS++QLR+ +AW FA + +I WMG F RN+AK AAR+GQ FS
Sbjct: 500 LCGRKYSFLAFSANQLRDRAAWFFAEDGKINVLQIIGWMGKFTN-RNIAKCAARMGQCFS 558
Query: 284 SSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAF 342
S+ T+ V ++ + +PD+K + Y FSDGIGK++ + A +VA K L NPP A+
Sbjct: 559 STYATVEVPSGQVNMHLPDIK----RNGYDFSDGIGKITPDLAMEVAQKLKLDLNPPCAY 614
Query: 343 QIRYGGYKGVVAADPTSSKK--LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLL 400
QIRY G KGVVA P + LSLR SM K+ S T L++ +W+++QP FLNRQ+I+LL
Sbjct: 615 QIRYAGCKGVVACWPEEGDRIRLSLRSSMIKFFSHHTTLEICSWTRFQPGFLNRQIITLL 674
Query: 401 STLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAE 460
STLG+ DE+F Q V +LD +L D A E + + S GE + +L G+KP E
Sbjct: 675 STLGVPDEVFWGMQNSMVSKLDKVLVDTDAAFEVV-ISSCGEQGHTPAIMLSAGFKPQTE 733
Query: 461 PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQL- 519
P L ML RAS+L LR K+RIFI +GR +MG LDE L GQ F+Q+S +
Sbjct: 734 PHLRGMLTCVRASQLWGLREKSRIFIHSGRWLMGVLDELGVLEQGQCFIQVSNPSLQNCF 793
Query: 520 --HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQK 577
HG S F+ ++ +++GLVV+AKNPCLHPGD+R+L+AV+ P LHH+ DC+VFPQK
Sbjct: 794 LKHG--SRFAETKKNFE-VIKGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQK 850
Query: 578 GMRPHPNECSGSDLDGDIYFVCWDDELIPP--QQDPPMDYTPAQSMQLDHDVQIEDVEEY 635
G RPH NE SGSDLDGD+YFV W++ LIPP + PM Y +L+ V +D+ E+
Sbjct: 851 GERPHTNEASGSDLDGDLYFVTWEEALIPPSKKSSQPMQYDLDAPRELNRSVTHKDIIEF 910
Query: 636 FTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLY 695
F+ +VN+ LG I NAH V +D A E C+ LAE +IAVDFPKTG +P L
Sbjct: 911 FSKNMVNEHLGSICNAHVVHSDLSEHGASDEKCIHLAELAAIAVDFPKTGKIVSMPAQLK 970
Query: 696 VKEYPDFMEKPDKPTYESQNVIGKLFRAVKDI----APHTSCIRLFTKEVARRSYDPDME 751
K YPDFM K + +Y+S ++G+L+R +KD +S + ++ +YD D+E
Sbjct: 971 PKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDKDVSESSELNFGASDI---NYDADLE 1027
Query: 752 VDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD--AEAI 809
+ G D+I DA K +YD +L L+ Y +K E E++TG I M K +K+ E +
Sbjct: 1028 ITGSADYITDAWAKKCSYDGQLIGLLKQYKVKREEEVVTGQIWSMPKYASKKLGDLKEKL 1087
Query: 810 GMAVRALRKEARAWFK------EKSGSDTEDDAYA-KASAWYHVTYHPDYWGCYNQGMNR 862
G + +LRKE R F+ E+ D ++ Y KASAWY VTYHP++ +
Sbjct: 1088 GHSYGSLRKEFRQLFENMDSEFEQLNEDEKNKLYERKASAWYQVTYHPEWVQKKLEFQKP 1147
Query: 863 DH-----FLSFPWCVYDRLVEIK 880
D LSF W D L IK
Sbjct: 1148 DGDEGVVMLSFAWIAADYLARIK 1170
>gi|206598331|gb|ACI16098.1| RNA-directed RNA polymerase 6a [Hordeum vulgare]
Length = 1047
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 360/890 (40%), Positives = 510/890 (57%), Gaps = 70/890 (7%)
Query: 36 RSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIE 95
R DL V G+ P +LF +N LV G V+ L FY L+ V+++
Sbjct: 157 RMQDLFFCVQHAQGLKFP--VLFLVNALVHKGVVSQHQLTPEFYGLLQRREDDVNVA--- 211
Query: 96 HALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYF 155
AL + + +K ++ R L + + + P + D V R+ +TP+ Y
Sbjct: 212 -ALKEFWGIKFPVFDACRRLKNLQDRVARN---PKLLHSKIGDDHSEVRRLVITPTTAYC 267
Query: 156 CGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITR-------- 207
P++ SNRV+RH+R D FL+++F+DE + +++S L+ SA I +
Sbjct: 268 LPPQVERSNRVVRHYRDAADRFLKVTFMDEGMQQLNSNVLN---FSAAQIVKDLMSNSFL 324
Query: 208 ---TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA---SRYGLTAAEIREW 261
T +Y R+ + L G + RK+ FLAFSS+QLR+ SAW FA + T IR+W
Sbjct: 325 QHKTTVYKRVKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDRTDRTRTVESIRKW 384
Query: 262 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEI-EIIPDVKIEIGKTKYVFSDGIGKV 320
MG F +NVAK+ AR+GQ FSS+ T+ +H E+ E + DV+ + YVFSDGIGK+
Sbjct: 385 MGRFTS-KNVAKHTARMGQCFSSTYATVVMHPHEVNECLEDVE----RNGYVFSDGIGKI 439
Query: 321 SAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAA--DPTSSKKLSLRDSMRKYESELTK 378
+ E A +VA K L DNPPSA+QIRY G+KGV+A +LSLR SM K+ES T
Sbjct: 440 TQELALEVAKKLQLTDNPPSAYQIRYAGFKGVIAVWEGENDGIQLSLRPSMHKFESPHTV 499
Query: 379 LDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELM 438
L+V++W+K+QP FLNRQ+I+LLS+L + D IF + Q++ + L+ ILTD A + +
Sbjct: 500 LEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFSQMQKDMLSNLNNILTDTDVAFDVVT-T 558
Query: 439 SPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 498
S + N +L G P EP L +L R+++LL L K+RIF+P GR +MGCLDE
Sbjct: 559 SCADEGNTAALMLSAGILPGTEPHLKALLLAIRSTQLLGLLEKSRIFVPKGRWLMGCLDE 618
Query: 499 TRTLNYGQVFVQISGAGYRQ-LHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 557
L GQ F++ S L FSS+ + IV G VV+AKNPCLHPGDVR+L
Sbjct: 619 LGILEQGQCFIRASSPVLNNSLVKHGPRFSSANNNAETIV-GTVVMAKNPCLHPGDVRIL 677
Query: 558 KAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDY 615
+A++VPALHH+VDC+VFP+ G RPH NE SGSDLDGD+YFV WD++LIPP + PMDY
Sbjct: 678 EAIDVPALHHLVDCLVFPKNGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDY 737
Query: 616 TPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKF 675
+PA++ QL V D+ ++F +VN+ LG I+NAH V AD A E C+QLAE
Sbjct: 738 SPAEAKQLPRQVTQSDIVDFFLKNMVNEKLGPISNAHVVHADMSEYGAMDEKCIQLAELA 797
Query: 676 SIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVK-----DIAPH 730
+ AVDFPKTG +PP L K YPDFM K D +Y+S+ ++G+L+R+++ D+ P
Sbjct: 798 AFAVDFPKTGKIVSMPPALRPKLYPDFMGKDDAISYKSEKILGRLYRSIQEASSSDLVPE 857
Query: 731 TSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILT 790
+C + YD DMEV G D + A K +Y+ +L L+ YG++TEAE++T
Sbjct: 858 ETCT------LNDLPYDTDMEVPGAADFLSSAWQCKCSYEAQLDALLKQYGVRTEAELVT 911
Query: 791 GSIMKMSKSFTKRRD--AEAIGMAVRALRKEARAWFK--EKSGS--------DTEDDAY- 837
I + K ++++ E + A ALRKE RA F+ E G D + Y
Sbjct: 912 EHIWSLPKYNSRKQGDIKERLKNAYSALRKEYRAIFESVEAPGQAKAVALDDDERNRVYE 971
Query: 838 AKASAWYHVTYHPDYWGCYNQGM---NRDH----FLSFPWCVYDRLVEIK 880
KASAWY VTYHP + + + +R+ LSF W + L IK
Sbjct: 972 MKASAWYQVTYHPKWVERSREALLEPDREEDTPARLSFAWIPVEHLARIK 1021
>gi|357466249|ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355492457|gb|AES73660.1| Rna-dependent RNA polymerase [Medicago truncatula]
Length = 1188
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 353/874 (40%), Positives = 500/874 (57%), Gaps = 71/874 (8%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALD---KLYHLKECC 108
+ ++I+F IN +V G L + F+ L+ V+++ ++H ++ +
Sbjct: 315 ISFDIMFLINAIVHRGIFNQYSLSNKFFELLKNQPKDVNVAALKHICTYKHPVFDAAKRL 374
Query: 109 YEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLR 168
+WL + Y S+ D ++ V R+ VTP++ Y PE+ +SNRVLR
Sbjct: 375 EAVQKWLLRNPKFYQISKQS---------DDVMEVRRLVVTPTKAYCISPEVELSNRVLR 425
Query: 169 HFRRDIDNFLRISFIDEDLDKIHSTDLS-------PRGSSATDITRTRIYTRILSTLRNG 221
FR D FLR++F+DE +++ L+ +S + +TRIY R+ + L +G
Sbjct: 426 RFREVSDRFLRVTFMDEGQQTLNNYALNYYVAPIVKEITSNSFQQKTRIYKRVKTILDDG 485
Query: 222 ILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQS 281
RK+ FLAFSS+QLR+ SAW FA +T +IR WMG F + +NVAK AAR+GQ
Sbjct: 486 FYFCGRKYSFLAFSSNQLRDRSAWFFAEDKDITCDDIRNWMGRFNQ-KNVAKCAARMGQC 544
Query: 282 FSSSKETLSVHMDEIE-IIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPS 340
FSS+ ++ V +E+ ++PDV+ + YVFSDGIG ++ + A +VA K L D PS
Sbjct: 545 FSSTYASVEVPANEVNSMLPDVE----RNNYVFSDGIGIITTDLAVEVAEKLKL-DKAPS 599
Query: 341 AFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLIS 398
A+QIRY G+KGVVA P KLSLR SM K++S T L++ AW+++QP FLNRQ+I+
Sbjct: 600 AYQIRYAGFKGVVACWPAKGDGIKLSLRPSMNKFQSTHTTLEICAWTRFQPGFLNRQIIT 659
Query: 399 LLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPD 458
LLS L + DEIF K Q + L+ +L D A + L S E+ N +L CG+ P
Sbjct: 660 LLSALDVPDEIFWKMQEGMISSLNQMLVDRDVAYDVLT-KSCAEHGNAAAIMLSCGFSPK 718
Query: 459 AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQ 518
EP L ML + RA++L LR K+RIF+ +GR +MG LDE L GQ FVQ+S
Sbjct: 719 TEPHLRGMLNSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLEN 778
Query: 519 L---HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFP 575
HG S FS +++ +V+G+VV+AKNPCLHPGDVRVL+AV+VP LHH+ DCVVFP
Sbjct: 779 CFSKHG--SRFSETKTVH--VVKGIVVIAKNPCLHPGDVRVLEAVDVPDLHHLYDCVVFP 834
Query: 576 QKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD--PPMDYTPAQSMQLDHDVQIEDVE 633
QKG RPH +E SGSDLDGD+YFV WD LIPP + PPM+Y +S V ++D+
Sbjct: 835 QKGERPHTDEASGSDLDGDLYFVTWDGNLIPPSKRSWPPMEYAAQESRLQTRQVTVQDII 894
Query: 634 EYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPH 693
++F +VN+ LG I NAH V AD A E C+ LAE + AVDFPKTG +P +
Sbjct: 895 DFFVRNMVNEQLGSICNAHVVHADSSDYGALDENCVHLAELAATAVDFPKTGKLVTMPSN 954
Query: 694 LYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDI------APHTSCIRLFTKEVARRSYD 747
L K YPDFM K +Y+S+ ++G+L+R +KD AP +C+ + ++ YD
Sbjct: 955 LKPKLYPDFMGKEHHQSYKSKKILGRLYRRIKDAYDKDIDAPEFNCV---SSDIL---YD 1008
Query: 748 PDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD-- 805
D+EV G + I DA + +YD +L L+ Y +KTE E++TG I M K ++++
Sbjct: 1009 TDLEVPGSSEFIADAWEQRCSYDGQLSGLLGQYKVKTEEEVVTGQIWSMPKYNSRKQGEL 1068
Query: 806 AEAIGMAVRALRKEARAWFKEKSG-----SDTEDDAY--AKASAWYHVTYHPDYW----- 853
E + + AL+KE R F++ SD E + KASAWY VTYHP +
Sbjct: 1069 KERLKHSYSALKKEFRQIFEKLKSDVGELSDKEKNLLYEQKASAWYQVTYHPKWVKKSLD 1128
Query: 854 ----GCYNQ---GMNRDHFLSFPWCVYDRLVEIK 880
NQ + LSFPW D L K
Sbjct: 1129 LQLKSSDNQSADSLGNMVMLSFPWIAVDYLACTK 1162
>gi|357119219|ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
[Brachypodium distachyon]
Length = 1208
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 354/871 (40%), Positives = 505/871 (57%), Gaps = 49/871 (5%)
Query: 39 DLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHAL 98
DL V +G+ P +LF +N LV G + L F L+ V+++ AL
Sbjct: 332 DLFFCVQHAEGLKFP--VLFLVNALVHKGIINQHQLTPEFLSLLSGRDDDVNVA----AL 385
Query: 99 DKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGP 158
+ + K + + L +R+ ++ S + D+ V V R+ +TP+ P
Sbjct: 386 KEFWGDKFPVFNARKRLEHAHRRVASNPKLLRSGKVGDDN--VEVRRLVITPTSASCLPP 443
Query: 159 EINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITR-------TRIY 211
+I +SNRVLRH+ D FLR++F+DE + +++ L+ + R T +Y
Sbjct: 444 QIELSNRVLRHYHEVADRFLRVTFMDEGMQSLNNNVLNFYTAPIVKALRPNSFQQKTAVY 503
Query: 212 TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNV 271
R+ L G + RK+ FLAFSS+QLR+ SAW FA T IR+WMG F +NV
Sbjct: 504 KRVKMFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDSKTTVESIRKWMGRFTS-KNV 562
Query: 272 AKYAARLGQSFSSSKETLSVHMDEI-EIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS 330
AK+AAR+GQ FSS+ T+ V DE+ E + DV+ + Y FSDGIGK++ + A +VA
Sbjct: 563 AKHAARMGQCFSSTYATVMVKPDEVNESLEDVE----RNNYTFSDGIGKITPDLAMEVAE 618
Query: 331 KCGLKDNPPSAFQIRYGGYKGVVAA--DPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQ 388
K L D+PPSA+QIRY GYKGV+A + +LSLR SM+K+ES+ + L+V++W+++Q
Sbjct: 619 KLQLMDSPPSAYQIRYAGYKGVIAVWQGNNNGIRLSLRPSMKKFESKHSVLEVVSWTRFQ 678
Query: 389 PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILK 448
P FLNRQ+I LLS+L + D+IF + Q + L+ IL D A E + S E N
Sbjct: 679 PGFLNRQIILLLSSLNVSDDIFSQMQESMLFNLNKILLDSDVAFEVVT-TSCAEQGNTAA 737
Query: 449 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 508
+L G+ P EP L ML R+++L +L KTRIF+P GR +MGCLDE L GQ F
Sbjct: 738 LMLSAGFGPGTEPHLRGMLLAIRSAQLQDLLEKTRIFVPKGRWLMGCLDELGVLEQGQCF 797
Query: 509 VQISGAGY-RQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH 567
VQ S A R S FS++++ I+ G VV+AKNPCLHPGDVR+L+AV+VP LHH
Sbjct: 798 VQASAASLDRCFLKHGSRFSANKNTD--IIVGTVVIAKNPCLHPGDVRILEAVDVPELHH 855
Query: 568 MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDH 625
+VDC+VFPQKG RPHPNE SGSDLDGD+YFV WD++L+PP + PMDY+PA++ Q
Sbjct: 856 LVDCLVFPQKGERPHPNEASGSDLDGDLYFVTWDEKLVPPGKKSWNPMDYSPAEAKQQQR 915
Query: 626 DVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTG 685
V D+ ++F +VN++LG I NAH V AD A E C++LAE + AVDFPKTG
Sbjct: 916 QVSQHDIVDFFLKNMVNENLGPICNAHVVHADLSEYGAMDEKCIRLAELAATAVDFPKTG 975
Query: 686 VPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRS 745
+PP L K YPDFM K + +Y+S+ ++G+L+R++++ S L ++E +
Sbjct: 976 KLVTMPPELRPKIYPDFMLKEESRSYKSEKILGRLYRSIQE----ASGGDLVSEEACTLN 1031
Query: 746 ---YDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTK 802
YD D+EV G + A K NY+ +L L++ + TEAE++TG + + K ++
Sbjct: 1032 DLLYDTDLEVPGASRFLTSAWECKCNYEGQLNVLLNQSRVCTEAELVTGHVWSLPKYNSR 1091
Query: 803 RRDA--EAIGMAVRALRKEARAWFKEKSG----SDTEDDAY--AKASAWYHVTYHPDYWG 854
++ E I A AL+KE R+ F+ + +D E + KASAWY VTYHP +
Sbjct: 1092 KQGEIRERIKNAYAALQKEYRSVFESLTDQCQITDDEKNLLYERKASAWYQVTYHPKWVE 1151
Query: 855 CY-----NQGMNRDHFLSFPWCVYDRLVEIK 880
G R LSF W D LV IK
Sbjct: 1152 KLRAMLDEDGEERPARLSFAWIAVDYLVRIK 1182
>gi|106733035|gb|ABF82437.1| putative RNA-dependent RNA polymerase 6 [Physcomitrella patens subsp.
patens]
gi|106733051|gb|ABF82438.1| putative RNA-dependent RNA polymerase 6 [Physcomitrella patens subsp.
patens]
Length = 1152
Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust.
Identities = 357/879 (40%), Positives = 493/879 (56%), Gaps = 73/879 (8%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 110
+P+E++F +N LV G + L FY V RA VS+ ++H L + +
Sbjct: 287 GVPFELMFLVNALVHRGIINMTSLTQEFYETVMSDRA-VSLFALQHMLTYTHPVFNAVLR 345
Query: 111 PSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF 170
Q +++ K +L G + ++RV TP+R P ++ SNRVLRH+
Sbjct: 346 -----VQQVQEWTRKNDKFRQGEKALAFGSILMYRVLFTPTRGICTLPVVSRSNRVLRHY 400
Query: 171 RRDIDNFLRISFIDEDLDKIHSTDL------SPRGSSAT-DITRTRIYTRILSTLRNGIL 223
D FLR+SF+DEDL +I L S R S+T + RT I+ RIL + NG
Sbjct: 401 HTLSDRFLRVSFVDEDLHQISPGSLTVPVSRSVRCLSSTYEYNRTEIHRRILDIVENGFK 460
Query: 224 IGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFS 283
+ R++ FLAFSSSQ+R SAW FAS + IR+WMG F +NVAKYAAR+GQ FS
Sbjct: 461 LCGRQYSFLAFSSSQMRGGSAWFFASTGNVNTHLIRQWMGKFPS-QNVAKYAARMGQCFS 519
Query: 284 SSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQ 343
S TL V + +PDV + Y+FSDG G ++ +FA +V+ L D PS +Q
Sbjct: 520 CSFPTLPVLKAMVRKLPDVV----RNGYIFSDGCGMIAPDFALRVSLSLKL-DYTPSVYQ 574
Query: 344 IRYGGYKGVVAADPTSSKK--LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLS 401
IRY GYKGVV+ P + L LRDSM+K+ES T+L+V+ WSKY PC+LNRQ+I LLS
Sbjct: 575 IRYAGYKGVVSTWPIPGRHSHLGLRDSMKKFESGHTELEVVNWSKYLPCYLNRQIICLLS 634
Query: 402 TLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEP 461
TL + + +F+ Q V +L A+L DP +A E + S ++ + +L G+ P EP
Sbjct: 635 TLKVENAVFKSLQDAQVARLKAMLGDPNQAYEIVT-TSCSDSHSTAATMLRGGFLPLKEP 693
Query: 462 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQ-LH 520
L +L + + S L +L +K RIF+PNGR ++GC+DET LNYGQ F+ +SG + L
Sbjct: 694 HLYELLVSIKFSLLEDLVSKARIFVPNGRWVIGCMDETGLLNYGQCFIHVSGPVSKACLG 753
Query: 521 GESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 580
G+ + S Q ++ G V++ KNPCLHPGD+R+L+AV++P LH MVDC+V PQ G R
Sbjct: 754 GDGNNLGHSGLLQ--VITGKVIMVKNPCLHPGDIRILEAVDLPELHSMVDCLVLPQNGPR 811
Query: 581 PHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDHDVQIEDVEEYFTN 638
PHPNE SGSDLDGD+YF CWD LIPP + PM+Y S L I+DV+ +F N
Sbjct: 812 PHPNEVSGSDLDGDVYFTCWDPNLIPPSGESWEPMEYAAHDSKILYRPANIKDVKNFFVN 871
Query: 639 YIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKE 698
++ND LG I+NAH AD+ P A CL+LA SIAVDFPKTG A +P L V E
Sbjct: 872 SMMNDKLGFISNAHVARADKSPEGALDSDCLRLAHLASIAVDFPKTGKNATMPHDLRVNE 931
Query: 699 YPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRS-----------YD 747
+PDFMEK TY+S VIG+L+R+V + EV + YD
Sbjct: 932 WPDFMEKEGAVTYQSNKVIGELYRSVT---------KFLKAEVEQHQHADNAVDLDSIYD 982
Query: 748 PDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSF--TKRRD 805
D++V G+E ++DDA K +YD +L +M ++ ++ EA ++ + + S R
Sbjct: 983 YDLQVPGYEVYLDDAWTKKISYDRQLRCMMTHFNVQREAALIASWLKRGSPGLRSVNRNR 1042
Query: 806 AEAIGMAVRALRKEARAWFKE-KSGSD----TED-------------DAYAKASAWYHVT 847
+A + L +E RA F+ K G D +ED D AKASAWYHVT
Sbjct: 1043 GDAFAQSYGVLYEEFRAQFEGLKKGLDPDGYSEDMVESSSSEIKGPTDFAAKASAWYHVT 1102
Query: 848 YHPDYWG-----CYNQGMNRDH-FLSFPWCVYDRLVEIK 880
YHP++ N G + LSFPW L IK
Sbjct: 1103 YHPEWKQKALEIFENSGESSPRPLLSFPWITASVLSNIK 1141
>gi|168067479|ref|XP_001785643.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162662723|gb|EDQ49541.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 1049
Score = 587 bits (1512), Expect = e-164, Method: Compositional matrix adjust.
Identities = 357/879 (40%), Positives = 493/879 (56%), Gaps = 73/879 (8%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 110
+P+E++F +N LV G + L FY V RA VS+ ++H L + +
Sbjct: 194 GVPFELMFLVNALVHRGIINMTSLTQEFYETVMSDRA-VSLFALQHMLTYTHPVFNAVLR 252
Query: 111 PSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF 170
Q +++ K +L G + ++RV TP+R P ++ SNRVLRH+
Sbjct: 253 -----VQQVQEWTRKNDKFRQGEKALAFGSILMYRVLFTPTRGICTLPVVSRSNRVLRHY 307
Query: 171 RRDIDNFLRISFIDEDLDKIHSTDL------SPRGSSAT-DITRTRIYTRILSTLRNGIL 223
D FLR+SF+DEDL +I L S R S+T + RT I+ RIL + NG
Sbjct: 308 HTLSDRFLRVSFVDEDLHQISPGSLTVPVSRSVRCLSSTYEYNRTEIHRRILDIVENGFK 367
Query: 224 IGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFS 283
+ R++ FLAFSSSQ+R SAW FAS + IR+WMG F +NVAKYAAR+GQ FS
Sbjct: 368 LCGRQYSFLAFSSSQMRGGSAWFFASTGNVNTHLIRQWMGKFPS-QNVAKYAARMGQCFS 426
Query: 284 SSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQ 343
S TL V + +PDV + Y+FSDG G ++ +FA +V+ L D PS +Q
Sbjct: 427 CSFPTLPVLKAMVRKLPDVV----RNGYIFSDGCGMIAPDFALRVSLSLKL-DYTPSVYQ 481
Query: 344 IRYGGYKGVVAADPTSSKK--LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLS 401
IRY GYKGVV+ P + L LRDSM+K+ES T+L+V+ WSKY PC+LNRQ+I LLS
Sbjct: 482 IRYAGYKGVVSTWPIPGRHSHLGLRDSMKKFESGHTELEVVNWSKYLPCYLNRQIICLLS 541
Query: 402 TLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEP 461
TL + + +F+ Q V +L A+L DP +A E + S ++ + +L G+ P EP
Sbjct: 542 TLKVENAVFKSLQDAQVARLKAMLGDPNQAYEIVT-TSCSDSHSTAATMLRGGFLPLKEP 600
Query: 462 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQ-LH 520
L +L + + S L +L +K RIF+PNGR ++GC+DET LNYGQ F+ +SG + L
Sbjct: 601 HLYELLVSIKFSLLEDLVSKARIFVPNGRWVIGCMDETGLLNYGQCFIHVSGPVSKACLG 660
Query: 521 GESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 580
G+ + S Q ++ G V++ KNPCLHPGD+R+L+AV++P LH MVDC+V PQ G R
Sbjct: 661 GDGNNLGHSGLLQ--VITGKVIMVKNPCLHPGDIRILEAVDLPELHSMVDCLVLPQNGPR 718
Query: 581 PHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDHDVQIEDVEEYFTN 638
PHPNE SGSDLDGD+YF CWD LIPP + PM+Y S L I+DV+ +F N
Sbjct: 719 PHPNEVSGSDLDGDVYFTCWDPNLIPPSGESWEPMEYAAHDSKILYRPANIKDVKNFFVN 778
Query: 639 YIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKE 698
++ND LG I+NAH AD+ P A CL+LA SIAVDFPKTG A +P L V E
Sbjct: 779 SMMNDKLGFISNAHVARADKSPEGALDSDCLRLAHLASIAVDFPKTGKNATMPHDLRVNE 838
Query: 699 YPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRS-----------YD 747
+PDFMEK TY+S VIG+L+R+V + EV + YD
Sbjct: 839 WPDFMEKEGAVTYQSNKVIGELYRSVT---------KFLKAEVEQHQHADNAVDLDSIYD 889
Query: 748 PDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSF--TKRRD 805
D++V G+E ++DDA K +YD +L +M ++ ++ EA ++ + + S R
Sbjct: 890 YDLQVPGYEVYLDDAWTKKISYDRQLRCMMTHFNVQREAALIASWLKRGSPGLRSVNRNR 949
Query: 806 AEAIGMAVRALRKEARAWFKE-KSGSD----TED-------------DAYAKASAWYHVT 847
+A + L +E RA F+ K G D +ED D AKASAWYHVT
Sbjct: 950 GDAFAQSYGVLYEEFRAQFEGLKKGLDPDGYSEDMVESSSSEIKGPTDFAAKASAWYHVT 1009
Query: 848 YHPDYWG-----CYNQGMNRDH-FLSFPWCVYDRLVEIK 880
YHP++ N G + LSFPW L IK
Sbjct: 1010 YHPEWKQKALEIFENSGESSPRPLLSFPWITASVLSNIK 1048
>gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
Length = 1197
Score = 586 bits (1511), Expect = e-164, Method: Compositional matrix adjust.
Identities = 360/920 (39%), Positives = 526/920 (57%), Gaps = 60/920 (6%)
Query: 10 PDFKENFAYYKESEDRFVLETGSAYSR---SLDLVPIVGPP-------DGIALPYEILFK 59
P FK+ Y++ES V+E G R D V P +GI+ +++LF
Sbjct: 279 PSFKKAMNYFRESRVP-VVEQGEQMLRVRNEPDFGESVSEPFFCFQNHEGIS--FKVLFL 335
Query: 60 INLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQY 119
+N ++ G V + + F+ L+ ++ V+++ ++H ++ K + R L
Sbjct: 336 VNAVLHKGIVNQHQMTAEFFSLLRKHQEGVNLAALKH----IFSYKRPVNDAIRKLA-SV 390
Query: 120 RKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLR 179
+K++ + LDD +V V R+ +TP++ Y P + +SNRVLR ++ D FLR
Sbjct: 391 QKWLFNNPNLLERTGQLDD-VVEVRRLVITPTKAYCLPPTVELSNRVLRKYKHISDRFLR 449
Query: 180 ISFIDEDLDKIHSTDLSPRG-------SSATDITRTRIYTRILSTLRNGILIGDRKFEFL 232
++F+DE + ++ L+ +S+++ RT I+ R+ + G + R++ FL
Sbjct: 450 VTFMDEGMRNLNRNALTYYAANIVREITSSSNPQRTGIFQRVKIIVNKGFYLCGRRYSFL 509
Query: 233 AFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVH 292
AFS++QLR+ SAW FA + I WMG F RNVAK AAR+GQ FSS+ T+ V
Sbjct: 510 AFSANQLRDRSAWFFAETPEIRVTSIINWMGKFGN-RNVAKCAARMGQCFSSTYATVEVL 568
Query: 293 MDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKG 351
E+ +PD++ + YVFSDGIG ++A+ + +VA+K L NPP A+QIRY G KG
Sbjct: 569 PSEVNSELPDIE----RNGYVFSDGIGMMTADLSIEVAAKLQLSVNPPCAYQIRYAGCKG 624
Query: 352 VVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEI 409
VVA P +LSLR SM+K++S T L++ +W++ QP FLNRQ+I+LLS+L + DE+
Sbjct: 625 VVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSWTRLQPGFLNRQIITLLSSLEVKDEM 684
Query: 410 FEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQT 469
F + Q+E + +LD IL D A + + S E N +L G+KP +EP L ML +
Sbjct: 685 FWEMQKEMLSKLDKILVDSDVAFDVIT-ASCAEAGNTAAIMLSAGFKPQSEPHLRGMLAS 743
Query: 470 FRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSS 529
RA++L +LR KTR+F+ +GR +MGCLDE L GQ F+Q+S + S
Sbjct: 744 IRAAQLGDLRNKTRMFVTSGRWLMGCLDELGELEQGQCFIQVSSPSLETCFVKHGPEFSE 803
Query: 530 RSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGS 589
+ +V+GLVV+AKNPCLHPGDVR+L+AV+VP LHH+ DC+VFPQKG RPH NE SGS
Sbjct: 804 IKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGS 863
Query: 590 DLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGI 647
DLDGD+YFV WD+ LIPP + PM Y PA++ QL VQ D+ ++F +V +SLG
Sbjct: 864 DLDGDLYFVTWDENLIPPSKKSWMPMAYAPAEAKQLGRQVQHTDIIDFFLKNMVQESLGE 923
Query: 648 IANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPD 707
I NAH V AD A E CL+LAE ++AVDFPKTG +P L K YPDFM K
Sbjct: 924 ICNAHVVHADLSEFGAMDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEP 983
Query: 708 KPTYESQNVIGKLFRAVKDI----APHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAI 763
+YES+ ++GKL+R V D+ +S + K++ YD ++E+ G+ED IDDA
Sbjct: 984 FQSYESKKILGKLYRQVIDVYDAEGGESSGLEYVPKDIP---YDTNLEIPGYEDFIDDAW 1040
Query: 764 YHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD--AEAIGMAVRALRKEAR 821
HK +YD +L L+ Y + E E++TG I M K K++ E + A LRKE R
Sbjct: 1041 NHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAKKQGELKERLKHAYNMLRKEFR 1100
Query: 822 AWFKEKSGS------DTEDDAYA-KASAWYHVTYHPDYWGCYN------QGMNRDHFLSF 868
F++ D ++D Y KA AWY VTYHP +W + ++ LSF
Sbjct: 1101 NVFEQMEPDFDLLPIDEKNDMYERKAFAWYRVTYHP-HWVTRSLELQLPDAVSNGVMLSF 1159
Query: 869 PWCVYDRLVEIKKDKTSIGN 888
W D + IK + + N
Sbjct: 1160 AWIAADYIARIKIRQRGMQN 1179
>gi|242080895|ref|XP_002445216.1| hypothetical protein SORBIDRAFT_07g006150 [Sorghum bicolor]
gi|241941566|gb|EES14711.1| hypothetical protein SORBIDRAFT_07g006150 [Sorghum bicolor]
Length = 1220
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 363/915 (39%), Positives = 511/915 (55%), Gaps = 63/915 (6%)
Query: 10 PDFKENFAYYKESE-DRFVLETGSAYSRSLDLVPIVGPPDGI--------ALPYEILFKI 60
P K+ AY KE V + GS R D P + L + +LF +
Sbjct: 314 PKMKDALAYMKEKRVPAVVCDIGSPGFRVHDEPEFGKPMQDLFLCVQHVEELQFSVLFLV 373
Query: 61 NLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR 120
N+LV G V L S F+ L+ V+++ + L + + + C W +
Sbjct: 374 NVLVHKGIVNEHQLTSKFFSLLKREEEQVNVAALTELLGENSQVFDVC-----WRLKNVQ 428
Query: 121 KYMTSRSK---PSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNF 177
++ K P S D V R+ +TP+R Y P++ SNRV+RH+ D F
Sbjct: 429 DWVAKNPKLIHPRSRGKVAGDYNAVVRRLVITPTRAYCMPPQVERSNRVIRHYHHVADRF 488
Query: 178 LRISFIDEDLDKIHSTDLSPRGSSATDIT-------RTRIYTRILSTLRNGILIGDRKFE 230
LR++F+DE + +++ LS + +TRIY R+ + + G + RK+
Sbjct: 489 LRVTFMDEGMQLLNNNALSFHAAPIVQSMMSKLFQHKTRIYRRVHTLMTKGFHLCGRKYS 548
Query: 231 FLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLS 290
FLAFSS+Q+++ SAW FA TAA IREWMG F RNVAK+AAR+G F+SS T+
Sbjct: 549 FLAFSSNQMKDRSAWFFAEEGTTTAATIREWMGQFPS-RNVAKHAARMGLCFTSSYATVV 607
Query: 291 VHMDEI-EIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGG 348
+E+ E++ D++ + Y FSDGIGK++ + A +VA++ L D PPSA+QIRY G
Sbjct: 608 TRPNEVNELLEDIE----RNGYNFSDGIGKITPDLAIEVAARLPLIDRYPPSAYQIRYAG 663
Query: 349 YKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIW 406
+KGV+A P + +LSLR SMRK+ES + ++V++W+K+QP FLNRQ+I LL +LG+
Sbjct: 664 FKGVIAVWPGQNDGIRLSLRPSMRKFESTHSVIEVVSWTKFQPAFLNRQIIILLMSLGVP 723
Query: 407 DEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMM 466
+ IF + Q ++ LD IL+D A + + P E I + +L G+ P EP L M
Sbjct: 724 EAIFWEMQEAMLKNLDRILSDREIAYKVVTNSCP-ERGTIARLMLSAGFSPATEPHLKAM 782
Query: 467 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR-QLHGESSL 525
L ++S+L L KT+IF+P GR +MGCLDE L GQ F+Q S S
Sbjct: 783 LLAIKSSQLKGLLKKTKIFVPKGRWLMGCLDELGILEQGQCFIQASSLSINNHFMKHGSR 842
Query: 526 FSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNE 585
FSS+ IV G VVVAKNPCLHPGDVRVL+AV+VP LHH+VDC+VFP+KG RPHPNE
Sbjct: 843 FSSANKNAVTIV-GTVVVAKNPCLHPGDVRVLEAVDVPELHHLVDCLVFPKKGERPHPNE 901
Query: 586 CSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDHDVQIEDVEEYFTNYIVND 643
SGSDLDGD+YFV WD L+PP + MDY+PA++ QL V D+ ++F + ++
Sbjct: 902 ASGSDLDGDVYFVTWDKNLVPPGKRSWKAMDYSPAEAKQLQRRVLQHDLIDFFLKNMASE 961
Query: 644 SLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFM 703
++G I+NAH V AD A E C+QLAE + AVDFPKTG +PP L +YPDFM
Sbjct: 962 NIGRISNAHVVHADISEYGAMDEKCIQLAELAATAVDFPKTGKIVRMPPSLRPTKYPDFM 1021
Query: 704 EKPDKPTYESQNVIGKLFRAVKDI---APHTSCIRLFTKEVARRSYDPDMEVDGFEDHID 760
EK D +Y+S+ +IGKL+R V+ P S I+ +YD D+EV G
Sbjct: 1022 EKDDAISYKSEKIIGKLYRTVRYYILGMPLESLIK-----DGMPAYDIDLEVPGASHFFL 1076
Query: 761 DAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEA---IGMAVRALR 817
DA K Y+ +L L++ Y TEAE++TG I ++ KR+ EA A L
Sbjct: 1077 DAWQWKCAYESRLNALLNQYSGCTEAELVTGVIWSLADG-RKRKKHEANEKFSHAYPELH 1135
Query: 818 KEARAWF------KEKSGSDTEDDAY-AKASAWYHVTYHPDYWGCYNQ-----GMNRDHF 865
+E R F +++ + ++ Y KASAWY VTYHP+ W +++ G R
Sbjct: 1136 QEFRRVFENIAADQDRMSDEKKNLVYEMKASAWYQVTYHPE-WIRFSREKEPHGEERPAR 1194
Query: 866 LSFPWCVYDRLVEIK 880
LSFPW D L IK
Sbjct: 1195 LSFPWIAIDYLACIK 1209
>gi|75330108|sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase SHL2; AltName:
Full=Protein SHOOTLESS 2
gi|21328146|dbj|BAC00725.1| putative RNA-dependent RNA polymerase [Oryza sativa Japonica Group]
gi|157279691|dbj|BAF80151.1| SHOOTLESS2 [Oryza sativa Japonica Group]
Length = 1218
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 348/862 (40%), Positives = 499/862 (57%), Gaps = 52/862 (6%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 110
L + +LF +N LV G + L F+ L+ V+++ + + + + C
Sbjct: 351 GLKFPLLFMVNALVHKGIINQHQLTPEFFSLLGRSEENVNVAALRDFWGDKFPVFDACGR 410
Query: 111 PSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF 170
+ L R P + D V R+ +TP+R Y PE+ SNRVLRH+
Sbjct: 411 LKKALNRVARN-------PKLLCSKVGDDHAEVRRLVITPTRAYCLPPEVERSNRVLRHY 463
Query: 171 RRDIDNFLRISFIDEDLDKIHSTDL-SPRGSSATDIT------RTRIYTRILSTLRNGIL 223
D FLR++F+DE + +++ L S D+ +T +Y R+ L G
Sbjct: 464 HEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFH 523
Query: 224 IGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFS 283
+ RK+ FLAFSS+QLR+ SAW FA T IR+WMG F +NVAK+AAR+GQ FS
Sbjct: 524 MCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKWMGRFTS-KNVAKHAARMGQCFS 582
Query: 284 SSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQ 343
S+ T+++ DE++ D ++ +Y+FSDGIGK++ + A +VA + L DNPPSA+Q
Sbjct: 583 STYATVTMRPDEVDESFD---DVVHNEYIFSDGIGKITPDLALEVAERLQLTDNPPSAYQ 639
Query: 344 IRYGGYKGVVAA--DPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLS 401
IR+ G+KGV+A +L LR SMRK+ES L+V++W+K+QP FLNRQ+I LLS
Sbjct: 640 IRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLVLEVVSWTKFQPGFLNRQIIILLS 699
Query: 402 TLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEP 461
+L + D IF + Q + L+ IL+D A E L S ++ N +L G++P EP
Sbjct: 700 SLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVLT-TSCADDGNTAALMLSAGFEPRTEP 758
Query: 462 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI---SGAGYRQ 518
L ML R+++L +L K RIF+P GR +MGCLDE L GQ F++ S Y
Sbjct: 759 HLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGVLEQGQCFIRATVPSLNSYFV 818
Query: 519 LHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 578
HG S FSS+ I+ G VV+AKNPCLHPGDVR+L+AV+VP LHH+VDC+VFPQKG
Sbjct: 819 KHG--SRFSSTDKNTEVIL-GTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKG 875
Query: 579 MRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDHDVQIEDVEEYF 636
RPH NE SGSDLDGD+YFV WD++LIPP + PMDY+P ++ QL V D+ ++F
Sbjct: 876 ERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFF 935
Query: 637 TNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYV 696
+++++LG I NAH V AD A E C+ LAE + AVDFPKTG A +PPHL
Sbjct: 936 LKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKP 995
Query: 697 KEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRS---YDPDMEVD 753
K YPDFM K D +Y+S+ ++G+L+R++++ S + ++EV + YD D+EV
Sbjct: 996 KVYPDFMGKEDGQSYKSEKILGRLYRSIQE----ASNGDVVSQEVCTPNDLPYDIDLEVP 1051
Query: 754 GFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD--AEAIGM 811
G D + A K +YD +L L+ Y ++TEAE++TG I + K+ +K++ + +
Sbjct: 1052 GASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHITFLVKNSSKKQGDIKDRLKT 1111
Query: 812 AVRALRKEARAWFKEKS------GSDTEDDAY-AKASAWYHVTYHPDYWGCYNQGM---- 860
A ALRKE ++ F+ + G D ++ Y KASAWY VTYHP W ++G+
Sbjct: 1112 AYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPK-WVEKSRGILGPD 1170
Query: 861 --NRDHFLSFPWCVYDRLVEIK 880
LSF W D L IK
Sbjct: 1171 GEEIPASLSFAWIPVDYLARIK 1192
>gi|167995454|gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
Length = 1197
Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust.
Identities = 344/861 (39%), Positives = 500/861 (58%), Gaps = 47/861 (5%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 110
+ ++++F +N ++ G V + + F+ L+ ++ V+++ ++H + + + +
Sbjct: 327 GISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSHQEEVNLAALKHMFSYKWPVNDAIQK 386
Query: 111 PSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF 170
RK++ K LDD +V V R+ +TP++ Y P + +SNRVLR++
Sbjct: 387 -----LVGIRKWLLKNPKLLERTGELDD-IVEVRRLVITPTKAYCLPPTVELSNRVLRNY 440
Query: 171 RRDIDNFLRISFIDEDLDKIHSTDLSPRG-------SSATDITRTRIYTRILSTLRNGIL 223
+ D FLR++F+DE + ++ L+ +S ++ RT I+ R+ S L G
Sbjct: 441 KHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFH 500
Query: 224 IGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFS 283
+ RK+ FLAFS++QLR+ SAW FA + I WMG F RNVAK AAR+GQ FS
Sbjct: 501 LCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFS 559
Query: 284 SSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAF 342
S+ T+ V E+ +PD++ + YVFSDGIG +SA+ A +VA K L NPPSA+
Sbjct: 560 STYATVEVPSSEVNSELPDIE----RNGYVFSDGIGMISADLAVEVAEKLHLSVNPPSAY 615
Query: 343 QIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLL 400
QIRY G KGVVA PT + +LSLR SM+K++S T L++ +W+++QP FLNRQ+++LL
Sbjct: 616 QIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLL 675
Query: 401 STLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAE 460
S+L + D IF + Q+E + LD +L D A + + S E N +L G+KP +E
Sbjct: 676 SSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVIT-ASCAEAGNTAAIMLSAGFKPQSE 734
Query: 461 PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLH 520
P L ML + RAS+L +LR K RIF+P+GR +MGCLDE L GQ F+Q+S
Sbjct: 735 PHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCF 794
Query: 521 GESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 580
+ S + +V+GLVV+AKNPCLHPGDVR+L+AV+VP LHH+ DC+VFPQKG R
Sbjct: 795 IKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDR 854
Query: 581 PHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDHDVQIEDVEEYFTN 638
PH NE SGSDLDGD+YFV WD+ LIPP + PM+Y PA+ Q+ V D+ ++F+
Sbjct: 855 PHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQMGRQVNHMDIIDFFSK 914
Query: 639 YIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKE 698
+V +SLG I NAH V AD A E CL+LAE ++AVDFPKTG +P L K
Sbjct: 915 NMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKM 974
Query: 699 YPDFMEKPDKPTYESQNVIGKLFRAVKDIAPH----TSCIRLFTKEVARRSYDPDMEVDG 754
YPDFM K + +Y+S+ ++GKL+R VKD+ ++ + L ++ YD +E+ G
Sbjct: 975 YPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPNDIP---YDSSLEIPG 1031
Query: 755 FEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD--AEAIGMA 812
IDDA K +YD +L L+ Y + E E++TG I M K K++ E + A
Sbjct: 1032 STAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHA 1091
Query: 813 VRALRKEARAWFKEKS------GSDTEDDAYA-KASAWYHVTYHPDYWGCYN------QG 859
LRKE R F+ D ++D Y KASAWY VTY+P +W +
Sbjct: 1092 YNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYNP-HWVARSLELQLPDA 1150
Query: 860 MNRDHFLSFPWCVYDRLVEIK 880
++ LSF W D L IK
Sbjct: 1151 VSSTVMLSFAWIAADYLARIK 1171
>gi|297737620|emb|CBI26821.3| unnamed protein product [Vitis vinifera]
Length = 943
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 282/415 (67%), Positives = 321/415 (77%), Gaps = 42/415 (10%)
Query: 475 LLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQR 534
LLELRTKTRIF+PNG S
Sbjct: 559 LLELRTKTRIFVPNG--------------------------------------SGSHHDN 580
Query: 535 FIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGD 594
FI++G VVVAKNPCLHPGDVR+L AV+VPALHHMVDCVVFPQKGMRPHP+ECSGSDLDGD
Sbjct: 581 FILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGD 640
Query: 595 IYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTV 654
IYFVCWD +LIPP+Q PMDYTPA + LDHDV IE+VEEYFTNYI ND LGIIANAHTV
Sbjct: 641 IYFVCWDHDLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTV 700
Query: 655 FADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQ 714
FAD+E KA PC +LA+ FSIA++FPKTGVPAEIP HL+VKEYPDFMEK +KPTYESQ
Sbjct: 701 FADKEYDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQ 760
Query: 715 NVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLG 774
+VIGKLFR VKD+APH +R FT++VA +SYD DMEVDGFED++ DA Y+K YD+KLG
Sbjct: 761 SVIGKLFREVKDVAPHNYDVRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLG 820
Query: 775 NLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDT-- 832
+LMD GI+TE+EIL+GSIMKMSKSF KR+DAEAI +AVR+LRKEAR WF K GS T
Sbjct: 821 SLMDCCGIRTESEILSGSIMKMSKSFDKRKDAEAIALAVRSLRKEARTWFN-KMGSGTYA 879
Query: 833 -EDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTSI 886
DD YA ASAWYHVTYHP YWGCYN+GM DHFLSFPWCVYD+L++IK+DK SI
Sbjct: 880 GADDVYAIASAWYHVTYHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDKMSI 934
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 260/382 (68%), Positives = 317/382 (82%), Gaps = 5/382 (1%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKI 60
+ELP+ +LP+F ENFA YKE++ +F+LE+G+++S +L LVPIVGPP G LP++ILFKI
Sbjct: 184 LELPHGSQLPNFCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKI 243
Query: 61 NLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR 120
N LVQNGC++GP LD+NF+R VDP R ++IS IEHAL+KLY+L+ECCYEP RWL +QYR
Sbjct: 244 NTLVQNGCLSGPTLDTNFFRWVDPQR--INISFIEHALEKLYYLEECCYEPVRWLHEQYR 301
Query: 121 KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRI 180
Y+ S+ SPAISLD GLVYV RVQ+TP +VYFCGPE+NVSNRVLR++ DIDNFLR+
Sbjct: 302 TYI-SKQVAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRV 360
Query: 181 SFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLR 240
SF+DE+ +KIHST +SPR S+ + RT +Y RILS L+NGI+IGD+KF+FLA SSSQLR
Sbjct: 361 SFLDENSEKIHSTVISPRMSN--EGRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLR 418
Query: 241 ESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIP 300
++SAWMFASR GLTAA+IR MG+F +IRNVAKYAARLGQSFSSSKETL V EIEIIP
Sbjct: 419 DNSAWMFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIP 478
Query: 301 DVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS 360
D++ T YVFSDGIGK+SAE A +VA KCG K++ PSAFQIRYGGYKGVVA DPTSS
Sbjct: 479 DIETHRDGTTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSS 538
Query: 361 KKLSLRDSMRKYESELTKLDVL 382
+KLSLR SM KYESE T LD+L
Sbjct: 539 RKLSLRKSMFKYESENTNLDLL 560
>gi|297748117|gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 580 bits (1495), Expect = e-162, Method: Compositional matrix adjust.
Identities = 345/858 (40%), Positives = 497/858 (57%), Gaps = 41/858 (4%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 110
+ + +LF +N ++ G V + + F+ L+ ++ V+ + ++H + + + +
Sbjct: 327 GISFRVLFLVNAVLHKGIVNQHQMANEFFYLLRSHQEEVNSAALKHMFSYKWPVNDAIQK 386
Query: 111 PSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF 170
+ +K++ K LDD +V V R+ +TP++ Y P + +SNRVLR++
Sbjct: 387 LA-----GIQKWLLKNPKLLDRTGELDD-IVEVRRLVITPTKAYCLPPTVELSNRVLRNY 440
Query: 171 RRDIDNFLRISFIDEDLDKIHSTDLSPRG-------SSATDITRTRIYTRILSTLRNGIL 223
+ D FLR++F+DE + ++ L+ +S ++ RT I+ R+ S L G
Sbjct: 441 KHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFH 500
Query: 224 IGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFS 283
+ RK+ FLAFS++QLR+ SAW FA + I WMG F RNVAK AAR+GQ FS
Sbjct: 501 LCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFS 559
Query: 284 SSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAF 342
S+ T+ V E+ +PD++ + YVFSDGIG +SA+ A +VA K L NPPSA+
Sbjct: 560 STYATVEVPSSEVNSELPDIE----RNGYVFSDGIGMISADLAIEVAEKLHLSVNPPSAY 615
Query: 343 QIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLL 400
QIRY G KGVVA PT + +LSLR SM+K++S T L++ +W+++QP FLNRQ+++LL
Sbjct: 616 QIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLL 675
Query: 401 STLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAE 460
S+L + D IF + Q+E + LD +L D A + + S E N +L G+KP +E
Sbjct: 676 SSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVIT-ASCAEAGNTAALMLSAGFKPQSE 734
Query: 461 PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLH 520
P L ML + RAS+L +LR K RIF+P+GR +MGCLDE L GQ F+Q+S
Sbjct: 735 PHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCF 794
Query: 521 GESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 580
+ S + +V+GLVV+AKNPCLHPGDVR+L+AV+VP+L H+ DC+VFPQKG R
Sbjct: 795 VKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDR 854
Query: 581 PHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDHDVQIEDVEEYFTN 638
PH NE SGSDLDGD+YFV WD+ LIPP + PM+Y PA+ QL V D+ ++F+
Sbjct: 855 PHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSK 914
Query: 639 YIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKE 698
+V +SLG I NAH V AD A E CL+LAE ++AVDFPKTG +P L K
Sbjct: 915 NMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKM 974
Query: 699 YPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARR-SYDPDMEVDGFED 757
YPDFM K + +Y+S+ ++GKL+R VKD+ + + V + YD +E+ G
Sbjct: 975 YPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDTTLEILGSTT 1034
Query: 758 HIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD--AEAIGMAVRA 815
IDDA K +YD +L L+ Y + E E++TG I M K K++ E + A
Sbjct: 1035 FIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSMPKYNAKKQGELKERLKHAYNT 1094
Query: 816 LRKEARAWFKEKS------GSDTEDDAYA-KASAWYHVTYHPDYWGCYN------QGMNR 862
LRKE R F+ D ++D Y KASAWY VTYHP +W + ++
Sbjct: 1095 LRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHP-HWVARSLELQLADAVSN 1153
Query: 863 DHFLSFPWCVYDRLVEIK 880
LSF W D L IK
Sbjct: 1154 TVMLSFAWIAADYLARIK 1171
>gi|224089239|ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1198
Score = 579 bits (1492), Expect = e-162, Method: Compositional matrix adjust.
Identities = 346/879 (39%), Positives = 496/879 (56%), Gaps = 60/879 (6%)
Query: 48 DGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKEC 107
+GIA +++LF +N ++ G L ++F+ L+ V+++ ++H
Sbjct: 326 EGIA--FDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPTEVNVAALKH----------- 372
Query: 108 CYEPSRWLTDQYRK------YMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEIN 161
Y R + D Y+K ++ K LDD + + R+ +TP++ Y PE+
Sbjct: 373 IYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDD-IAEIRRLVITPTKAYCLPPEVE 431
Query: 162 VSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL----SPRGSSATDIT---RTRIYTRI 214
+SNRVLR ++ D FLR++F+DE L ++S L +P + T + +TRI+ R+
Sbjct: 432 LSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYSFPQKTRIFKRV 491
Query: 215 LSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKY 274
S L G + R++ FLAFSS+QLR+ SAW FA + I+ WMG F +N+AK
Sbjct: 492 RSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMGKFTN-KNIAKC 550
Query: 275 AARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCG 333
AAR+GQ FSS+ T+ V +E+ +PD+K + Y FSDGIG ++ + AR+VA K
Sbjct: 551 AARMGQCFSSTYATIEVPPEEVNSDLPDIK----RNGYDFSDGIGMITPDLAREVAEKLK 606
Query: 334 LKDNPPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCF 391
+PP A+QIRY G KGVVA P +LSLR SM K++S T L++ +W+++QP F
Sbjct: 607 FDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWTRFQPGF 666
Query: 392 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL 451
LNRQ+I+LLS L + D +F K Q V +L+ +L D A + L S E N+ +L
Sbjct: 667 LNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLT-ASCAEQGNVAAIML 725
Query: 452 ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI 511
G+KP EP L ML RA++L LR K RIF+P+GR +MGCLDE L GQ F+Q+
Sbjct: 726 SAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQV 785
Query: 512 SGAGYRQL---HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 568
S + HG S FS ++ + +V+G VV+AKNPCLHPGD+R+L+AV+ P LHH+
Sbjct: 786 SNSYLENCFVKHG--SKFSETKKNLQ-VVKGTVVIAKNPCLHPGDIRILEAVDAPGLHHL 842
Query: 569 VDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDHD 626
DC+VFPQKG RPH NE SGSDLDGD+YFV WD+ LIPP + PM Y A++ QL
Sbjct: 843 YDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLTRP 902
Query: 627 VQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGV 686
V +D+ E+F + N++LG I NAH V AD A E CL LAE + AVDFPKTG
Sbjct: 903 VNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKTGK 962
Query: 687 PAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRS- 745
+P L K YPDFM K + +Y+S+ ++G+L+R +KD R
Sbjct: 963 IVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRGDI 1022
Query: 746 -YDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRR 804
YD D+EV G D I DA K +YD +L L+ Y +K E E++TG + M K ++++
Sbjct: 1023 PYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSRKQ 1082
Query: 805 D--AEAIGMAVRALRKEARAWFKE------KSGSDTEDDAYA-KASAWYHVTYHPDYWGC 855
E + + L++E R F++ + D ++ Y KASAWY VTYHP +
Sbjct: 1083 GDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWIQK 1142
Query: 856 Y-----NQGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNA 889
+ G LSF W D L IK + IGN
Sbjct: 1143 SLELQDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNV 1181
>gi|226596555|gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
Length = 1197
Score = 579 bits (1492), Expect = e-162, Method: Compositional matrix adjust.
Identities = 347/861 (40%), Positives = 502/861 (58%), Gaps = 47/861 (5%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 110
+ +++LF N ++ G V + + F+ L+ ++ V+++ ++H + + + +
Sbjct: 327 GISFKVLFLANAVLHKGIVNQHQMINEFFYLLRSHQEEVNLAALKHMFSYKWPVNDAIQK 386
Query: 111 PSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF 170
+ +K++ K LDD +V V R+ +TP++ Y P + +SNRVLR++
Sbjct: 387 LA-----GIQKWLLKNPKLLERTGELDD-IVEVRRLVITPTKAYCLPPTVELSNRVLRNY 440
Query: 171 RRDIDNFLRISFIDEDLDKIHSTDLSPRG-------SSATDITRTRIYTRILSTLRNGIL 223
+ D FLR++F+DE + ++ L+ +S ++ RT I+ R+ S L G
Sbjct: 441 KHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFH 500
Query: 224 IGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFS 283
+ RK+ FLAFS++QLR+ SAW FA + I WMG F RNVAK AAR+GQ FS
Sbjct: 501 LCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFS 559
Query: 284 SSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAF 342
S+ T+ V E+ +PD++ + YVFSDGIG +SA+ A +VA K L NPP+A+
Sbjct: 560 STYATVEVPSSEVNSELPDIE----RNGYVFSDGIGMISADLAIEVAEKLHLSVNPPAAY 615
Query: 343 QIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLL 400
QIRY G KGVVA PT + +LSLR SM+K++S T L++ +W+++QP FLNRQ+++LL
Sbjct: 616 QIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLL 675
Query: 401 STLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAE 460
S+L + D IF + Q+E + LD +L D A + + S E N +L G+KP +E
Sbjct: 676 SSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVIT-ASCAEAGNTAALMLSAGFKPQSE 734
Query: 461 PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQL- 519
P L ML + RAS+L +LR K RIF+P+GR +MGCLDE L GQ F+Q+S
Sbjct: 735 PHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCF 794
Query: 520 --HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQK 577
HG S FS + + +V+GLVV+AKNPCLHPGDVR+L+AV+VP+L H+ DC+VFPQK
Sbjct: 795 VKHG--SKFSDIKKNLQ-VVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQK 851
Query: 578 GMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDHDVQIEDVEEY 635
G RPH NE SGSDLDGD+YFV WD+ +IPP + PM+Y PA+ QL V D+ ++
Sbjct: 852 GDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDF 911
Query: 636 FTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLY 695
F+ +V +SLG I NAH V AD A E CL+LAE ++AVDFPKTG +P L
Sbjct: 912 FSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLK 971
Query: 696 VKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARR-SYDPDMEVDG 754
K YPDFM K + +Y+S+ ++GKL+R VKD+ + + V + YD +E+ G
Sbjct: 972 PKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDTTLEILG 1031
Query: 755 FEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD--AEAIGMA 812
IDDA K +YD +L L+ Y + E E++TG I M K K++ E + A
Sbjct: 1032 STTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHA 1091
Query: 813 VRALRKEARAWFKEKS------GSDTEDDAYA-KASAWYHVTYHPDYWGCYN------QG 859
LRKE R F+ D ++D Y KASAWY VTYHP +W +
Sbjct: 1092 YNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHP-HWVARSLELQIPDA 1150
Query: 860 MNRDHFLSFPWCVYDRLVEIK 880
++ LSF W D L IK
Sbjct: 1151 VSSTVMLSFAWIAADYLARIK 1171
>gi|449499234|ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
Length = 1197
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 343/866 (39%), Positives = 488/866 (56%), Gaps = 58/866 (6%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH-------ALDKLYHL 104
+ +EILF +N ++ G + + F+ L+ V+++ + H LD L
Sbjct: 327 ISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQPNEVNLAALSHIHAFRRPVLDACKKL 386
Query: 105 KECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSN 164
K WL + RSK L D +V + R+ +TPS+ Y PE+ +SN
Sbjct: 387 KLV----QEWLLKN--PTLLKRSK------ELVD-IVEIRRLVITPSKAYCFPPEVELSN 433
Query: 165 RVLRHFRRDIDNFLRISFIDEDLDKIHS-------TDLSPRGSSATDITRTRIYTRILST 217
RVLR ++ D FLR++F+DE + KI+S + +S++ +T+I+ R+
Sbjct: 434 RVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSFPQKTKIFARMKHI 493
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAAR 277
L++G + RK+ FLA+SS+QLR+ SAW FA ++ I WMG F +NVAK AAR
Sbjct: 494 LKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKSISVDAILGWMGKFTN-KNVAKCAAR 552
Query: 278 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 337
+GQ FSS+ T+ V + + D+ ++ + YVFSDGIG ++ + A++VA K + +
Sbjct: 553 IGQCFSSTYATIEVPRNMVN--HDLS-DVERNGYVFSDGIGTITPDLAQEVADKLKMDGS 609
Query: 338 PPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQ 395
PP A+QIRY GYKGVVA P+ +L+LR SM K+ES L++ +W+++QP FLNRQ
Sbjct: 610 PPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFESNHRILEICSWTRFQPGFLNRQ 669
Query: 396 LISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGY 455
+I+LLSTL + DEIF Q + +LD ++TD A E L S E N +L G+
Sbjct: 670 IITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLT-ASCAEQGNAAAIMLSAGF 728
Query: 456 KPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG 515
+P EP L ML RA++L LR K RIF+ GR MGC DE+ L GQ F+Q+S
Sbjct: 729 EPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQCFIQVSTPL 788
Query: 516 YRQL---HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCV 572
+ HG SLF+ +++ +V+G VV+AKNPCLHPGDVR+L+AV+ P LHH+ DC+
Sbjct: 789 LEKCFSKHG--SLFAETKNNLT-VVRGTVVIAKNPCLHPGDVRILEAVDAPELHHLYDCL 845
Query: 573 VFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD--PPMDYTPAQSMQLDHDVQIE 630
VFP+ G RPH NE SGSDLDGD+YF WD LIPP + PPM+Y PA+ L +
Sbjct: 846 VFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWPPMEYAPAEVKTLQRKITRW 905
Query: 631 DVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEI 690
D+ E+F ++N+SLG I NAH V ADR A E C+QL+E + AVDFPKTG +
Sbjct: 906 DIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQLSELAATAVDFPKTGKLVTM 965
Query: 691 PPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCI--RLFTKEVARRSYDP 748
PPHL K YPDFM K +Y+S ++GK++R ++D I R YD
Sbjct: 966 PPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGDVHYDV 1025
Query: 749 DMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD--A 806
D+EV G ED I +A K +YD +L L+ Y + E EI+TG I M K ++++
Sbjct: 1026 DLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRKQGELK 1085
Query: 807 EAIGMAVRALRKEARAWFK------EKSGSDTEDDAY-AKASAWYHVTYHPDYWGCYNQG 859
E + + L+K+ R F+ E+ D + Y KASAWY V YHP + +
Sbjct: 1086 EKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQVAYHPTWLKKSLEL 1145
Query: 860 MNRDH-----FLSFPWCVYDRLVEIK 880
D LSFPW D L IK
Sbjct: 1146 REPDAPEAVPMLSFPWIAADYLARIK 1171
>gi|449441914|ref|XP_004138727.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase 6 [Cucumis sativus]
Length = 1197
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 343/866 (39%), Positives = 488/866 (56%), Gaps = 58/866 (6%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH-------ALDKLYHL 104
+ +EILF +N ++ G + + F+ L+ V+++ + H LD L
Sbjct: 327 ISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQPNEVNLAALSHIHAFRRPVLDACKKL 386
Query: 105 KECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSN 164
K WL + RSK L D +V + R+ +TPS+ Y PE+ +SN
Sbjct: 387 KLV----QEWLLKN--PTLLKRSK------ELVD-IVEIRRLVITPSKAYCFPPEVELSN 433
Query: 165 RVLRHFRRDIDNFLRISFIDEDLDKIHS-------TDLSPRGSSATDITRTRIYTRILST 217
RVLR ++ D FLR++F+DE + KI+S + +S++ +T+I+ R+
Sbjct: 434 RVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEITSSSFPQKTKIFARMKHI 493
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAAR 277
L++G + RK+ FLA+SS+QLR+ SAW FA ++ I WMG F +NVAK AAR
Sbjct: 494 LKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKSISVDAILGWMGKFTN-KNVAKCAAR 552
Query: 278 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 337
+GQ FSS+ T+ V + + D+ ++ + YVFSDGIG ++ + A++VA K + +
Sbjct: 553 IGQCFSSTYATIEVPRNMVN--HDLS-DVERNGYVFSDGIGTITPDLAQEVADKLKMDGS 609
Query: 338 PPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQ 395
PP A+QIRY GYKGVVA P+ +L+LR SM K+ES L++ +W+++QP FLNRQ
Sbjct: 610 PPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFESNHRILEICSWTRFQPGFLNRQ 669
Query: 396 LISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGY 455
+I+LLSTL + DEIF Q + +LD ++TD A E L S E N +L G+
Sbjct: 670 IITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVLT-ASCAEQGNAAAIMLSAGF 728
Query: 456 KPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG 515
+P EP L ML RA++L LR K RIF+ GR MGC DE+ L GQ F+Q+S
Sbjct: 729 EPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFDESGVLQEGQCFIQVSTPL 788
Query: 516 YRQL---HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCV 572
+ HG SLF+ +++ +V+G VV+AKNPCLHPGDVR+L+AV+ P LHH+ DC+
Sbjct: 789 LEKCFSKHG--SLFAETKNNLT-VVRGTVVIAKNPCLHPGDVRILEAVDAPELHHLYDCL 845
Query: 573 VFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD--PPMDYTPAQSMQLDHDVQIE 630
VFP+ G RPH NE SGSDLDGD+YF WD LIPP + PPM+Y PA+ L +
Sbjct: 846 VFPRNGERPHTNEASGSDLDGDLYFTTWDGNLIPPSKKSWPPMEYAPAEVKTLQRKITRW 905
Query: 631 DVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEI 690
D+ E+F ++N+SLG I NAH V ADR A E C+QL+E + AVDFPKTG +
Sbjct: 906 DIMEFFAKNMINESLGTICNAHVVHADRSKHGALDENCIQLSELAATAVDFPKTGKLVTM 965
Query: 691 PPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCI--RLFTKEVARRSYDP 748
PPHL K YPDFM K +Y+S ++GK++R ++D I R YD
Sbjct: 966 PPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRDAYDDDDMITSRELNFTPGDVHYDV 1025
Query: 749 DMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD--A 806
D+EV G ED I +A K +YD +L L+ Y + E EI+TG I M K ++++
Sbjct: 1026 DLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNREEEIVTGHIWSMPKYVSRKQGELK 1085
Query: 807 EAIGMAVRALRKEARAWFK------EKSGSDTEDDAY-AKASAWYHVTYHPDYWGCYNQG 859
E + + L+K+ R F+ E+ D + Y KASAWY V YHP + +
Sbjct: 1086 EKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNALYEKKASAWYQVAYHPTWLKKSLEL 1145
Query: 860 MNRDH-----FLSFPWCVYDRLVEIK 880
D LSFPW D L IK
Sbjct: 1146 REPDAPEAVPMLSFPWIAADYLARIK 1171
>gi|163930853|dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 344/858 (40%), Positives = 496/858 (57%), Gaps = 41/858 (4%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 110
+ ++++F +N ++ G V + + F+ L+ + V+ + ++H + + + +
Sbjct: 327 GISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSRQEEVNSAALKHMFSYKWPVNDAIQK 386
Query: 111 PSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF 170
+K++ K LDD +V V R+ +TP++ Y P + +SNRVLR++
Sbjct: 387 -----LVGIQKWLLKNPKLLDRTGELDD-IVEVRRLVITPTKAYCLPPTVELSNRVLRNY 440
Query: 171 RRDIDNFLRISFIDEDLDKIHSTDLSPRG-------SSATDITRTRIYTRILSTLRNGIL 223
+ D FLR++F+DE + ++ L+ +S ++ RT I+ R+ S L G
Sbjct: 441 KHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFH 500
Query: 224 IGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFS 283
+ RK+ FLAFS++QLR+ SAW FA + I WMG F RNVAK AAR+GQ FS
Sbjct: 501 LCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFS 559
Query: 284 SSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAF 342
S+ T+ V E+ +PD++ + YVFSDGIG +SA+ A +VA K L NPPSA+
Sbjct: 560 STYATVEVPSREVNSELPDIE----RNGYVFSDGIGMISADLAIEVAEKLHLSVNPPSAY 615
Query: 343 QIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLL 400
QIRY G KGVVA PT + +LSLR SM+K++S T L++ +W+++QP FLNRQ+++LL
Sbjct: 616 QIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLL 675
Query: 401 STLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAE 460
S+L + D IF + Q+E + LD +L D A + + S E N +L G+KP +E
Sbjct: 676 SSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVIT-ASCAEAGNTAAIMLSAGFKPQSE 734
Query: 461 PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLH 520
P L ML + RAS+L +LR K RIF+P+GR +MGCLDE L GQ F+Q+S
Sbjct: 735 PHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCF 794
Query: 521 GESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 580
+ S + +V+GLVV+AKNPCLHPGDVR+L+AV+VP+L H+ DC+VFPQKG R
Sbjct: 795 VKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDR 854
Query: 581 PHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDHDVQIEDVEEYFTN 638
PH NE SGSDLDGD+YFV WD+ LIPP + PM+Y PA+ QL V D+ ++F+
Sbjct: 855 PHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSK 914
Query: 639 YIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKE 698
+V +SLG I NAH V AD A E CL+LAE ++AVDFPKTG +P L K
Sbjct: 915 NMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKM 974
Query: 699 YPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARR-SYDPDMEVDGFED 757
YPDFM K + +Y+S+ ++GKL+R VKD+ + + V + YD +E+ G
Sbjct: 975 YPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDSTLEILGSTA 1034
Query: 758 HIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD--AEAIGMAVRA 815
IDDA K +YD +L L+ Y + E E++TG I M K K++ E + A
Sbjct: 1035 FIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNT 1094
Query: 816 LRKEARAWFKE------KSGSDTEDDAYA-KASAWYHVTYHPDYWGCYN------QGMNR 862
LRKE R F+ D ++D Y KASAWY VTYHP +W + ++
Sbjct: 1095 LRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYHP-HWVARSLELQLPDAVSN 1153
Query: 863 DHFLSFPWCVYDRLVEIK 880
LSF W D L IK
Sbjct: 1154 TVMLSFAWIAADYLARIK 1171
>gi|194719815|emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 343/858 (39%), Positives = 496/858 (57%), Gaps = 41/858 (4%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 110
+ ++++F +N ++ G V + + F+ L+ + V+++ ++H + + + +
Sbjct: 327 GISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSRQEEVNLAALKHMFSYKWPVNDAIQK 386
Query: 111 PSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF 170
+K++ K LDD +V V R+ +TP++ Y P + +SNRVLR++
Sbjct: 387 -----LVGIQKWLLKNPKLLERTGELDD-IVEVRRLVITPTKAYCLPPTVELSNRVLRNY 440
Query: 171 RRDIDNFLRISFIDEDLDKIHSTDLSPRG-------SSATDITRTRIYTRILSTLRNGIL 223
+ D FLR++F+DE + ++ L+ +S ++ RT I+ R+ S L G
Sbjct: 441 KHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFH 500
Query: 224 IGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFS 283
+ RK+ FLAFS++QLR+ SAW FA + I WMG F RNVAK AAR+GQ FS
Sbjct: 501 LCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFS 559
Query: 284 SSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAF 342
S+ T+ V E+ +PD++ + YVFSDGIG +SA+ A +VA K L NPPSA+
Sbjct: 560 STYATVEVPSSEVNSELPDIE----RNGYVFSDGIGMISADLAIEVAEKLHLNVNPPSAY 615
Query: 343 QIRYGGYKGVVAADPTSSKK--LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLL 400
QIRY GYKGVVA PT + LSLR SM+K++S T L++ +W+++QP FLNRQ+++LL
Sbjct: 616 QIRYAGYKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLL 675
Query: 401 STLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAE 460
S+L + D IF + Q+E + LD +L D A + + S E N +L G+KP +E
Sbjct: 676 SSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVIT-ASCAEAGNTAALMLSAGFKPQSE 734
Query: 461 PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLH 520
P L ML + RAS+L +LR K RIF+P+GR +MGCLDE L GQ F+Q+S
Sbjct: 735 PHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCF 794
Query: 521 GESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 580
+ S + +V+GLVV+AKNPCLHPGDVR+L+AV+VP+L H+ DC+VFPQKG R
Sbjct: 795 VKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDR 854
Query: 581 PHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDHDVQIEDVEEYFTN 638
PH NE SGSDLDGD+YFV WD+ LIPP + PM+Y PA+ QL V D+ ++F+
Sbjct: 855 PHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSK 914
Query: 639 YIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKE 698
+V +SLG I NAH V AD A E CL+LAE ++AVDFPKTG +P L K
Sbjct: 915 NMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKM 974
Query: 699 YPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARR-SYDPDMEVDGFED 757
YPDFM K + +Y+S+ ++GKL+R VKD+ + + V + YD + + G
Sbjct: 975 YPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPKDIPYDTTLVIPGSTV 1034
Query: 758 HIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD--AEAIGMAVRA 815
IDDA K +YD +L L+ Y + E E++TG I M K K++ E + A
Sbjct: 1035 FIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHAYNT 1094
Query: 816 LRKEARAWFKE------KSGSDTEDDAYA-KASAWYHVTYHPDYWGCYN------QGMNR 862
LRKE R F+ D ++D Y KASAWY VTY+P +W + ++
Sbjct: 1095 LRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNP-HWVARSLELQLPDAISS 1153
Query: 863 DHFLSFPWCVYDRLVEIK 880
LSF W D L IK
Sbjct: 1154 TVMLSFAWIAADYLARIK 1171
>gi|297819596|ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
Length = 1197
Score = 574 bits (1479), Expect = e-160, Method: Compositional matrix adjust.
Identities = 344/875 (39%), Positives = 501/875 (57%), Gaps = 57/875 (6%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 110
+ +EI+F +N ++ G L F+ L+ V+I+ ++H C Y+
Sbjct: 325 GISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQPKDVNIASLKHL---------CTYK 375
Query: 111 PSRWLTDQYRKY-MTSRSKPSSPAI----SLDDGLVYVHRVQVTPSRVYFCGPEINVSNR 165
R + D Y++ + +P + + + + R+ +TP+R Y PE+ +SNR
Sbjct: 376 --RPVFDAYKRLKLVQEWILKNPKLLGGHEQSEDISEIRRLVITPTRAYCLPPEVELSNR 433
Query: 166 VLRHFRRDIDNFLRISFIDEDLDKIHSTDLS-------PRGSSATDITRTRIYTRILSTL 218
VLR +R + FLR++F+DE + I+S LS +S++ +T ++ R+ S L
Sbjct: 434 VLRKYRAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQKTYVFKRVKSIL 493
Query: 219 RNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARL 278
+G + RK+ FLAFS++QLR+SSAW FA ++I+ WMG F++ +NVAK AAR+
Sbjct: 494 TDGFKLCGRKYSFLAFSANQLRDSSAWFFAEDGKTRVSDIKAWMGKFKD-KNVAKCAARM 552
Query: 279 GQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 337
G FSS+ T+ V +E+ +PD++ + YVFSDGIG ++ + A +V K L +
Sbjct: 553 GLCFSSTYATVDVMPNEVNTELPDIE----RNGYVFSDGIGTITPDLADEVMEKLKLDLH 608
Query: 338 -PPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNR 394
P A+QIRY G+KGVVA P+ +L+LRDSM+K+ S+ T L++ +W+++QP FLNR
Sbjct: 609 CTPCAYQIRYAGFKGVVARWPSKGDGIRLALRDSMKKFNSKHTILEICSWTRFQPGFLNR 668
Query: 395 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICG 454
Q+I+LLS LG+ DEIF Q + +L+ IL D A E L S E N +L G
Sbjct: 669 QIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLT-ASCAEQGNTAAIMLSAG 727
Query: 455 YKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGA 514
+KP EP L ML + R ++L LR K+RIF+ +GR +MGCLDE L +GQ F+Q+S
Sbjct: 728 FKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGKLEHGQCFIQVSKP 787
Query: 515 GYRQL---HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDC 571
HG S F +++ +V+G V +AKNPCLHPGDVR+L+AV+VP LHHM DC
Sbjct: 788 SIENCFSKHG--SRFKETKTDLE-VVKGYVAIAKNPCLHPGDVRILEAVDVPQLHHMYDC 844
Query: 572 VVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD--PPMDYTPAQSMQLDHDVQI 629
++FP+KG RPH NE SGSDLDGD+YFV WD +LIPP + P M Y A+ L V
Sbjct: 845 LIFPKKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKTLGRAVNH 904
Query: 630 EDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAE 689
+D+ ++F + N+ LG I NAH V ADR A E C+ LAE + AVD PKTG
Sbjct: 905 QDIIDFFARNMANEHLGTICNAHVVHADRSEYGAMDEECVLLAELAATAVDSPKTGKIVS 964
Query: 690 IPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARR-SYDP 748
+P HL K YPDFM K D TY+S ++G+L+R VK++ + YD
Sbjct: 965 MPFHLKPKLYPDFMGKEDYQTYKSSKILGRLYRRVKEVYDEDAEASSEESSDPSDIPYDI 1024
Query: 749 DMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD--A 806
D+E+ GFED I +A HK +YD +L L+ Y ++ E EI+TG I M K +K++
Sbjct: 1025 DLEIPGFEDLIPEAWGHKCSYDRQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQCDLK 1084
Query: 807 EAIGMAVRALRKEARAWFKE-----KSGSDTEDDAY--AKASAWYHVTYHPDYWGCYNQG 859
E + + +L+KE R F+E + S+ E + KASAWYHVTYHP + +
Sbjct: 1085 ERLKHSYNSLKKEFRKVFEETILDHEELSEEEKNILYEKKASAWYHVTYHPKWVKKSLEL 1144
Query: 860 MNRDH------FLSFPWCVYDRLVEIKKDKTSIGN 888
+ D LSF W D L +IK +GN
Sbjct: 1145 QDPDEPSSHAVMLSFAWIAADYLAKIKIRSGEMGN 1179
>gi|242093792|ref|XP_002437386.1| hypothetical protein SORBIDRAFT_10g025950 [Sorghum bicolor]
gi|241915609|gb|EER88753.1| hypothetical protein SORBIDRAFT_10g025950 [Sorghum bicolor]
Length = 1239
Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust.
Identities = 351/852 (41%), Positives = 492/852 (57%), Gaps = 44/852 (5%)
Query: 57 LFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLK-ECCYEP-SRW 114
L+ +N+L+ N V L S F+ L+ V+++ AL +L+ K + C P SR
Sbjct: 388 LYLVNVLIHNRIVNLHQLTSEFFSLLRRAHEDVNVA----ALTELFGAKLQVCSNPCSRL 443
Query: 115 LTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDI 174
Q R + L D V R+ +TP+R Y P++ SNRV RH+ +
Sbjct: 444 KNAQDRATKNLNLLFHGSSRKLGDFNAEVRRLIITPTRTYCMPPQLERSNRVTRHYHQLS 503
Query: 175 DNFLRISFIDEDLDKIHSTDLSPR--------GSSATDITRTRIYTRILSTLRNGILIGD 226
D FLR++F+DE + +++ LS + SS T T +Y R+ + L G +
Sbjct: 504 DRFLRVAFVDEGMLPLNANALSLQVVPLVKDLMSSPTQ-QMTTVYRRVQTILTEGFTMCG 562
Query: 227 RKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSK 286
RK+ FLAFS+SQL++ SAW FA T A ++EWMG F IRN AK+AAR+G F+SS
Sbjct: 563 RKYSFLAFSTSQLKQKSAWFFAEDGTTTVASMKEWMGQF-PIRNPAKHAARMGLCFTSSY 621
Query: 287 ETLSVHMDEI-EIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD-NPPSAFQI 344
T+++ E+ E + DV I G Y FSDGIG ++ + A +VA + L D PS +QI
Sbjct: 622 ATVTMQPCEVDEYLEDV-IHNG---YNFSDGIGMITQDLALEVAKRLQLTDIYAPSTYQI 677
Query: 345 RYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLST 402
RY G+KGVVA + ++SLR SMRK+ES + L+VL+W+K+QP FLNRQ+I+LL++
Sbjct: 678 RYAGFKGVVAVSTGQNDGMRMSLRPSMRKFESAHSVLEVLSWTKFQPSFLNRQIITLLTS 737
Query: 403 LGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPF 462
LG+ D +F + Q + L IL+D A E + P E+ + +L G+ P EP
Sbjct: 738 LGVPDAVFWQMQEAMLGNLKRILSDNNVAYEVVTNSCP-EHGSTAGLMLSAGFAPATEPH 796
Query: 463 LSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLH-G 521
L ML AS++ L KTRIF+P GR +MGCLDE L GQ F+Q+S +
Sbjct: 797 LRAMLLAICASQMQGLLDKTRIFVPKGRWLMGCLDELGILEQGQCFIQVSTPSLNNCYVN 856
Query: 522 ESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRP 581
S+F S I+ G VV+AKNPCLHPGDVR+L+AV+VP LHH+VDC+VFPQKG RP
Sbjct: 857 RGSIFPSEYKNNAEIIVGTVVMAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERP 916
Query: 582 HPNECSGSDLDGDIYFVCWDDELIPP--QQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNY 639
H NE SGSDLDGDIYFV WD+ L+PP Q PMDY PA++ QL +V D+ +++
Sbjct: 917 HANEASGSDLDGDIYFVTWDENLVPPGRQSGTPMDYFPAKTKQLPREVHQSDIIDFYLES 976
Query: 640 IVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEY 699
+VND+LG I NAH V ADR A C+QLA+ +IAVD KTG +PP L KEY
Sbjct: 977 MVNDNLGRICNAHVVHADRSDDGAMDPKCIQLAKLAAIAVDSAKTGEIVRMPPSLSPKEY 1036
Query: 700 PDFMEKPDKPTYESQNVIGKLFRAV-----KDIAPHTSCIRLFTKEVARRSYDPDMEVDG 754
PDFM K D +Y+S+ ++G+L+R++ D +CI T YD D+EV G
Sbjct: 1037 PDFMGKGDAISYKSKKILGRLYRSILRENGDDFVSQGTCISNETP------YDIDLEVPG 1090
Query: 755 FEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKM-SKSFTKRRDAEAIGMAV 813
++DA K Y+ +L L+ YG+++EAE++TG I + + + + E I A
Sbjct: 1091 ALSFLEDAWQCKCLYEAQLNTLLSQYGLRSEAELVTGEIWPLVGYNKYQYQLKERINYAY 1150
Query: 814 RALRKEARAWFK--EKSGSDTEDDAY-AKASAWYHVTYHPDYWGCYNQGMNRDHF-LSFP 869
L +E R+ F+ + S D ++ AY KASAWY VTYHP++ + LSF
Sbjct: 1151 SKLHQEFRSIFESIDISYCDNKNLAYEMKASAWYQVTYHPEFIRLREPDDEKTPARLSFA 1210
Query: 870 WCVYDRLVEIKK 881
W D L +IKK
Sbjct: 1211 WIAVDYLAQIKK 1222
>gi|51989472|gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
Length = 1197
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 340/860 (39%), Positives = 497/860 (57%), Gaps = 47/860 (5%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 110
+ ++++F +N ++ G V + + F+ L+ ++ V+++ ++H + + + +
Sbjct: 327 GISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSHQEEVNLAALKHMFSYKWPVNDAIQK 386
Query: 111 PSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF 170
+K++ K LDD +V V R+ +TP++ Y P + +SNRVLR++
Sbjct: 387 -----LVGIQKWLLKNPKLLERTGELDD-IVEVRRLVITPTKAYCLPPTVELSNRVLRNY 440
Query: 171 RRDIDNFLRISFIDEDLDKIHSTDLSPRG-------SSATDITRTRIYTRILSTLRNGIL 223
+ D FLR++F+DE + ++ L+ +S ++ RT I+ R+ S L G
Sbjct: 441 KHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFH 500
Query: 224 IGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFS 283
+ RK+ FLAFS++QLR+ SAW FA + I WMG F RNVAK AAR+GQ FS
Sbjct: 501 LCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNVAKCAARMGQCFS 559
Query: 284 SSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAF 342
S+ T+ V E+ +PD++ + YVFSDGIG +SA+ A +VA K L NPPSA+
Sbjct: 560 STYATVEVPSSEVNSELPDIE----RNGYVFSDGIGMISADLALEVAEKLHLSVNPPSAY 615
Query: 343 QIRYGGYKGVVAADPTSSKK--LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLL 400
QIRY G KGVVA PT + LSLR SM+K++S T L++ +W+++QP FLNRQ+++LL
Sbjct: 616 QIRYAGCKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLL 675
Query: 401 STLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAE 460
S+L + D IF + Q+E + L+ +L D A + + S E N +L G+KP +E
Sbjct: 676 SSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVIT-ASCAEAGNTAAIMLSAGFKPQSE 734
Query: 461 PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLH 520
P L ML + RAS+L +LR K RIF+P+GR +MGCLDE L GQ F+Q+S
Sbjct: 735 PHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCF 794
Query: 521 GESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 580
+ S + +V+GLVV+AKNPCLHPGDVR+L+AV+VP LHH+ DC+VFPQKG R
Sbjct: 795 IKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDR 854
Query: 581 PHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDHDVQIEDVEEYFTN 638
PH NE SGSDLDGD+YFV WD+ LIPP + PM+Y PA+ QL V D+ ++F+
Sbjct: 855 PHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSK 914
Query: 639 YIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKE 698
+V +SLG I NAH V AD A E CL+LAE ++AVDFPKTG +P L K
Sbjct: 915 NMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKM 974
Query: 699 YPDFMEKPDKPTYESQNVIGKLFRAVKDIAPH----TSCIRLFTKEVARRSYDPDMEVDG 754
YPDFM K + +Y+S+ ++GKL+R VKD+ ++ + L ++ YD +E+ G
Sbjct: 975 YPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPNDIP---YDSSLEIPG 1031
Query: 755 FEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD--AEAIGMA 812
+ DA K +YD +L L+ Y + E E++TG I M K K++ E + A
Sbjct: 1032 STVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKKQGELKERLKHA 1091
Query: 813 VRALRKEARAWFKE------KSGSDTEDDAYA-KASAWYHVTYHPDYWGCYN------QG 859
LRKE R F+ D ++D Y KASAWY VTY+P +W +
Sbjct: 1092 YNMLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNP-HWVARSLELQLPDA 1150
Query: 860 MNRDHFLSFPWCVYDRLVEI 879
++ LSF W D L I
Sbjct: 1151 VSSTVMLSFAWIAADYLARI 1170
>gi|222623633|gb|EEE57765.1| hypothetical protein OsJ_08301 [Oryza sativa Japonica Group]
Length = 1027
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 294/515 (57%), Positives = 362/515 (70%), Gaps = 48/515 (9%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGS-AYSRSLDLVPIVGPPDGIALPYEILFK 59
+E+P R +LP+ ++ F YY E F +G YS VPIV + PYEILFK
Sbjct: 233 LEVPRRCDLPNIRDYFFYYHEYNHDFECRSGGYPYSSDTRFVPIVKSRGYV--PYEILFK 290
Query: 60 INLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQY 119
IN LVQNG ++GP +D +F+RLV P A V I I+ AL+ + +LK+ C P+
Sbjct: 291 INHLVQNGTLSGPTVDDSFFRLVSP--AFVPIDHIKRALEMMSYLKKTCLNPT------- 341
Query: 120 RKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLR 179
+YF GPEINVSNRV+R+F DI+NFLR
Sbjct: 342 ---------------------------------MYFYGPEINVSNRVVRNFSSDIENFLR 368
Query: 180 ISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL 239
ISF+DED +K+ +TDLSPR +S D RT +Y R+LS L +GI IG + FEFLAFSSSQL
Sbjct: 369 ISFVDEDCEKLRATDLSPRSASGHDANRTALYKRVLSVLSDGITIGGKNFEFLAFSSSQL 428
Query: 240 RESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEII 299
R++SAWMFASR GL A++IR WMG+FR IRNVAKYAARLGQSFSSS ETL V E+E I
Sbjct: 429 RDNSAWMFASRQGLAASDIRTWMGDFRNIRNVAKYAARLGQSFSSSTETLKVQKYEVEEI 488
Query: 300 PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS 359
D+K T++VFSDGIGK+S+ FA +VA KC LK PSAFQIRYGGYKGVVA DPTS
Sbjct: 489 SDIK---NGTQHVFSDGIGKISSAFANEVAMKCNLKRFAPSAFQIRYGGYKGVVAVDPTS 545
Query: 360 SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 419
KLSLR SM K++S+ +DVLA+SKYQP FLNRQLI+LLSTLG+ D +FE+KQ EAV
Sbjct: 546 RWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFLNRQLITLLSTLGVRDSVFEQKQEEAVN 605
Query: 420 QLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 479
QL+ ++TDP A EA+ELM GE TN +KELL+CGY+PD EP+LSM+LQTFRASKLLEL+
Sbjct: 606 QLNKMVTDPQAAIEAIELMPMGEITNAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELK 665
Query: 480 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGA 514
TK+RI IP GR+MMGCLDETRTL YGQVF++ +
Sbjct: 666 TKSRILIPKGRAMMGCLDETRTLKYGQVFIRATSG 700
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 210/317 (66%), Positives = 254/317 (80%), Gaps = 6/317 (1%)
Query: 580 RPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNY 639
RPHPNECSGSDLDGDIYFV WD LIPP+ PMDYTPA + LDHDV IE+VEEYFTNY
Sbjct: 706 RPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVEEYFTNY 765
Query: 640 IVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEY 699
IVN+SLG+IANAH VFAD+E KA S PC++LA+ FSIAVDFPKTGVPA IPP L+VKEY
Sbjct: 766 IVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEY 825
Query: 700 PDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHI 759
PDFMEK DK TYES+ VIGKL+R +K PH I+ FT+EVARRSYD DM VDG+ED+I
Sbjct: 826 PDFMEKLDKVTYESKGVIGKLYREIKKHTPH---IKHFTREVARRSYDTDMIVDGYEDYI 882
Query: 760 DDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKE 819
+A+ K YD+KLGNLMD+YGIK+EAEI++G I+KM+K+FTK+ DA+AI +AVR+LRKE
Sbjct: 883 TEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAVRSLRKE 942
Query: 820 ARAWFKEKSGSDT---EDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRL 876
AR+ F E S D D + AKASAWYHVTYHP++WGCYN+G R HF+SFPWC+Y++L
Sbjct: 943 ARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFISFPWCIYEKL 1002
Query: 877 VEIKKDKTSIGNAFPAL 893
+ IK+ + + P L
Sbjct: 1003 LRIKQRRKFVRKMQPEL 1019
>gi|242093794|ref|XP_002437387.1| hypothetical protein SORBIDRAFT_10g025970 [Sorghum bicolor]
gi|241915610|gb|EER88754.1| hypothetical protein SORBIDRAFT_10g025970 [Sorghum bicolor]
Length = 1251
Score = 560 bits (1444), Expect = e-156, Method: Compositional matrix adjust.
Identities = 343/862 (39%), Positives = 502/862 (58%), Gaps = 48/862 (5%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLY--HLKECC 108
L + L+ +N+L+ NG V L S F+ L+ + V+++ AL +L+ L + C
Sbjct: 399 GLRFPELYLVNVLIHNGIVNPHQLTSEFFSLLRRAQEDVNVA----ALTELFGTKLHQVC 454
Query: 109 YEP-SRWLTDQYRKYMTSRSKPSSPAISLDDGLVY-VHRVQVTPSRVYFCGPEINVSNRV 166
+P SR Q R +S + D V+ V R+ +TP+R Y P++ SNRV
Sbjct: 455 NDPCSRLKNAQVRAAKNLNLLSNSSSRKFGDYNVFEVRRLIITPTRAYCMPPQVERSNRV 514
Query: 167 LRHFRRDIDNFLRISFIDEDLDKIHSTDLSPR-------GSSATDITRTRIYTRILSTLR 219
RH+R+ D FLR++F+DE + ++S LS S++ T +Y R+ + L
Sbjct: 515 TRHYRQVSDRFLRVTFVDEGMLPLNSHALSLHVVPFVKDSMSSSSQQMTTVYRRVQTILT 574
Query: 220 NGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLG 279
G + RK+ FLAFS+SQL++ SAW FA T A ++EWMG F IRN AK+AAR+G
Sbjct: 575 EGFTMCGRKYSFLAFSTSQLKQKSAWFFAEDGTTTVASMKEWMGQF-PIRNPAKHAARMG 633
Query: 280 QSFSSSKETLSVHMDEI-EIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD-N 337
F+SS T+++ E+ E + DV I G Y FSDGIG ++ + A +VA + L D
Sbjct: 634 LCFTSSYATVTMQPCEVNEYLEDV-IHNG---YNFSDGIGIITQDLALEVAKRLPLTDIY 689
Query: 338 PPSAFQIRYGGYKGVVAADPTSS---KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNR 394
PSA+QIRY G+KGVVA P + + +SLR SMRK+ES ++V++W+K+QP FLNR
Sbjct: 690 APSAYQIRYAGFKGVVAVSPRHNDGMRMMSLRPSMRKFESVHPVIEVVSWTKFQPAFLNR 749
Query: 395 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICG 454
Q+I+LL++LG+ D++F + Q + L IL++ A + + P E+ + +L G
Sbjct: 750 QIITLLTSLGVPDDVFWQMQEAMLGNLKRILSNTDVAYKIVTSSCP-EHGSTAGLMLTAG 808
Query: 455 YKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGA 514
+ P EP L ML AS++ L KT IF+P GR +MGCLDE L GQ F+++S
Sbjct: 809 FAPATEPHLRAMLLAICASQMKGLLDKTWIFVPKGRWLMGCLDELGILEQGQCFIRVSTP 868
Query: 515 GYRQLHGESSLFSSSRSRQRF-IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVV 573
+ S S + I+ G VV+AKNPCLHPGDVR+L+AV+VP LHH+VDC+V
Sbjct: 869 SLNNHYMNRGSISPSEYKNNAEIIVGTVVMAKNPCLHPGDVRILEAVDVPELHHLVDCLV 928
Query: 574 FPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDHDVQIED 631
FP+KG RPH NE SGSDLDGD+YFV WD+ L+PP + PMDY+P++S QL +V +D
Sbjct: 929 FPKKGERPHSNEASGSDLDGDVYFVTWDENLVPPGRKSCTPMDYSPSKSKQLPREVHQQD 988
Query: 632 VEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIP 691
+++ +VND+LG I NAH ADR A C++LAE +IAVD KTG ++P
Sbjct: 989 TIDFYLESMVNDNLGRICNAHVAHADRSDDGAMDTKCVELAELAAIAVDSAKTGEIVKMP 1048
Query: 692 PHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAV-----KDIAPHTSCIRLFTKEVARRSY 746
P L KEYPDFM K D +Y+S+ ++G+L+R++ D+ +CI Y
Sbjct: 1049 PSLSPKEYPDFMGKEDAISYKSKKILGRLYRSILMENSGDLLSQVTCIS------NENQY 1102
Query: 747 DPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD- 805
D D+EV G ++DA K Y+ +L L++ +G+ +EAE++TG I + + K+
Sbjct: 1103 DTDLEVPGALSFLEDAWKCKCLYEAQLNTLLNQFGVHSEAELVTGEIWSLV-GYNKKYQY 1161
Query: 806 --AEAIGMAVRALRKEARAWFK--EKSGSDTEDDAY-AKASAWYHVTYHPDYWGCYNQGM 860
E + A L +E R+ F+ + S D+++ AY KASAWY VTYHP++
Sbjct: 1162 QLKERLNYAYSKLHQEFRSIFESIDVSYGDSKNLAYEMKASAWYQVTYHPEFIRLRELDD 1221
Query: 861 NRDHF-LSFPWCVYDRLVEIKK 881
+ LSF W D L +IKK
Sbjct: 1222 EKTPARLSFAWIPVDYLAQIKK 1243
>gi|15229153|ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
gi|75337188|sp|Q9SG02.1|RDR6_ARATH RecName: Full=RNA-dependent RNA polymerase 6; Short=AtRDRP6; AltName:
Full=Protein SILENCING DEFECTIVE 1; AltName: Full=Protein
SUPPRESSOR OF GENE SILENCING 2; AltName:
Full=RNA-directed RNA polymerase 6
gi|12324444|gb|AAG52184.1|AC012329_11 putative RNA-directed RNA polymerase; 73997-69985 [Arabidopsis
thaliana]
gi|6899955|emb|CAB71285.1| RNA-directed RNA polymerase-like protein [Arabidopsis thaliana]
gi|8164028|gb|AAF73959.1| SGS2 [Arabidopsis thaliana]
gi|332645029|gb|AEE78550.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
Length = 1196
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 349/883 (39%), Positives = 509/883 (57%), Gaps = 63/883 (7%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 110
+ +EI+F +N ++ G L F+ L+ V+I+ ++H C Y+
Sbjct: 325 GISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQPKDVNIASLKHL---------CTYK 375
Query: 111 PSRWLTDQYRKY-MTSRSKPSSPAI----SLDDGLVYVHRVQVTPSRVYFCGPEINVSNR 165
R + D Y++ + +P + + + + R+ +TP+R Y PE+ +SNR
Sbjct: 376 --RPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDISEIRRLVITPTRAYCLPPEVELSNR 433
Query: 166 VLRHFRRDIDNFLRISFIDEDLDKIHSTDLS-------PRGSSATDITRTRIYTRILSTL 218
VLR ++ + FLR++F+DE + I+S LS +S++ +T ++ R+ S L
Sbjct: 434 VLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQKTYVFKRVKSIL 493
Query: 219 RNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARL 278
+G + RK+ FLAFS++QLR+ SAW FA ++I+ WMG F++ +NVAK AAR+
Sbjct: 494 TDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKFKD-KNVAKCAARM 552
Query: 279 GQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 337
G FSS+ T+ V E++ +PD++ + YVFSDGIG ++ + A +V K L +
Sbjct: 553 GLCFSSTYATVDVMPHEVDTEVPDIE----RNGYVFSDGIGTITPDLADEVMEKLKLDVH 608
Query: 338 -PPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNR 394
P A+QIRY G+KGVVA P+ S +L+LRDSM+K+ S+ T L++ +W+++QP FLNR
Sbjct: 609 YSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEICSWTRFQPGFLNR 668
Query: 395 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICG 454
Q+I+LLS LG+ DEIF Q + +L+ IL D A E L S E N +L G
Sbjct: 669 QIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLT-ASCAEQGNTAAIMLSAG 727
Query: 455 YKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGA 514
+KP EP L ML + R ++L LR K+RIF+ +GR +MGCLDE L +GQ F+Q+S
Sbjct: 728 FKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHGQCFIQVSKP 787
Query: 515 GYRQL---HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDC 571
HG S F +++ +V+G V +AKNPCLHPGDVR+L+AV+VP LHHM DC
Sbjct: 788 SIENCFSKHG--SRFKETKTDLE-VVKGYVAIAKNPCLHPGDVRILEAVDVPQLHHMYDC 844
Query: 572 VVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD--PPMDYTPAQSMQLDHDVQI 629
++FPQKG RPH NE SGSDLDGD+YFV WD +LIPP + P M Y A+ L V
Sbjct: 845 LIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSLGRAVNH 904
Query: 630 EDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAE 689
+D+ ++F + N+ LG I NAH V ADR A E CL LAE + AVDFPKTG
Sbjct: 905 QDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPKTGKIVS 964
Query: 690 IPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRS---Y 746
+P HL K YPDFM K D TY+S ++G+L+R VK++ + ++E S Y
Sbjct: 965 MPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDA--EASSEESTDPSAIPY 1022
Query: 747 DPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD- 805
D +E+ GFED I +A HK YD +L L+ Y ++ E EI+TG I M K +K++
Sbjct: 1023 DAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQGE 1082
Query: 806 -AEAIGMAVRALRKEARAWFKE-----KSGSDTEDDAY--AKASAWYHVTYHPDYWGCYN 857
E + + +L+KE R F+E ++ S+ E + KASAWYHVTYHP++
Sbjct: 1083 LKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWVKKSL 1142
Query: 858 QGMNRDH-----FLSFPWCVYDRLVEIK---KDKTSIGNAFPA 892
+ + D LSF W D L IK ++ SI +A P
Sbjct: 1143 ELQDPDESSHAAMLSFAWIAADYLARIKIRSREMGSIDSAKPV 1185
>gi|413955011|gb|AFW87660.1| hypothetical protein ZEAMMB73_096378 [Zea mays]
Length = 1901
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 343/868 (39%), Positives = 497/868 (57%), Gaps = 49/868 (5%)
Query: 49 GIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLK-EC 107
G L + L+ +N+L+ NG V + F+ L+ R V+++ AL +L+ K
Sbjct: 1047 GAGLRFPELYLVNVLMHNGVVNPHQMTPEFFGLLMRTREDVNVA----ALTELFGAKLGV 1102
Query: 108 CYEPSRWL---TDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSN 164
C P L D+ K + + SS D V R+ VTP+R Y P++ SN
Sbjct: 1103 CDNPCWRLKNAQDKAAKNLDLVCRSSSSRRKASDCDAEVRRLIVTPTREYCMPPQVERSN 1162
Query: 165 RVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG-----SSATDITRTRIYTRILSTLR 219
RV+RH+ D FLR++F DE + ++ L+ R + +T T +Y R+ + L
Sbjct: 1163 RVIRHYHELSDRFLRVTFTDEGMLPLNPNALTLRAVPSTSTPSTSRQMTSVYRRVQTALT 1222
Query: 220 NGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLG 279
G+++ R++ FLAFS+SQL++ SAW FA T A I+EWMG F IRN AK+AAR+G
Sbjct: 1223 EGLIMCGRRYSFLAFSASQLKQKSAWFFAEDGATTVAGIKEWMGQF-PIRNPAKHAARMG 1281
Query: 280 QSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN-P 338
F+SS T+++ E++ D++ ++ + Y FSDGIG ++ + A +VA L D
Sbjct: 1282 LCFTSSYATVTMQPGEVD--EDLE-DVTRNGYNFSDGIGVITEDLALEVAEMLPLADRFA 1338
Query: 339 PSAFQIRYGGYKGVVAADPTS-------SKKLSLRDSMRKYESELTKLDVLAWSKYQPCF 391
PSA+QIRY G+KGVVA P ++++SLR SMRK+ES L+V++W+K+QP F
Sbjct: 1339 PSAYQIRYAGFKGVVAVSPPGPGQEDRGTRRMSLRPSMRKFESTHNVLEVVSWTKFQPAF 1398
Query: 392 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL 451
LNRQ+I+LL+TLG+ D+ F + Q + +L +L+D A E + P E + +L
Sbjct: 1399 LNRQIITLLTTLGVPDDSFWQLQEAMLGKLRRVLSDSDVAYEVVTNSCP-EQGSTAGLML 1457
Query: 452 ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI 511
G+ P EP L ML S++ L KT IF+P GR +MGCLDE L GQ F+++
Sbjct: 1458 GAGFAPATEPHLRAMLLAICTSQMQGLLNKTWIFVPKGRWLMGCLDEFGILEQGQCFLRV 1517
Query: 512 S--GAGYRQLHGESSLFSSS--RSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH 567
S G R ++ S +F S ++ G VV+AKNPCLHPGDVR+L+AV+VP L+H
Sbjct: 1518 STPSLGSRCVN-RSPIFPSEYKGDANAQVITGTVVMAKNPCLHPGDVRILEAVDVPDLYH 1576
Query: 568 MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDH 625
+VDC VFP+KG RPH +E SGSDLDGD+YFV WD+ L+PP + PMDY+PA++ QL H
Sbjct: 1577 LVDCFVFPKKGERPHADEASGSDLDGDVYFVTWDESLVPPGRKSCTPMDYSPAKTKQLPH 1636
Query: 626 DVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTG 685
DV +D +++ +V D+LG I NAH ADR A C++LA SIAVD KTG
Sbjct: 1637 DVHQQDTIDFYLESMVYDNLGRICNAHAAHADRSDDGAMDPKCIELARLASIAVDSAKTG 1696
Query: 686 VPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAV-----KDIAPHTSCIRLFTKE 740
+PP L KEYPDFM K D +Y S+ ++G+L+R+V D +CI + E
Sbjct: 1697 EIVRMPPALSPKEYPDFMGKEDAISYRSEKILGRLYRSVLGENDGDFLSRGACI---SDE 1753
Query: 741 VARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSF 800
+ YD D+EV G D + DA + Y+ +L L+D Y +++EAE++TG I ++
Sbjct: 1754 I---RYDADLEVPGASDFLQDAWRCRCLYEARLNALLDQYNVRSEAELVTGEIWSLAGCS 1810
Query: 801 TKRRDA--EAIGMAVRALRKEARAWFKEKSGS-DTEDDAY-AKASAWYHVTYHPDYWGCY 856
K + E I A + +E R F+ S D ++ AY KASAWY VTYHP+
Sbjct: 1811 KKYQHQLKERINYAYSKVHQEFRIIFESIGASTDNKNLAYEMKASAWYQVTYHPEIIRSR 1870
Query: 857 NQG-MNRDHFLSFPWCVYDRLVEIKKDK 883
G + LSF W D L +IK +
Sbjct: 1871 EPGDEDAPTRLSFAWIAVDYLAQIKMKR 1898
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/332 (31%), Positives = 166/332 (50%), Gaps = 62/332 (18%)
Query: 49 GIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLK-EC 107
G L + +L+ +N+L+ NG V + F+ L+ R V+++ AL +L+ K
Sbjct: 398 GAGLRFPVLYLVNVLMHNGVVNPHQMTPEFFGLLMRTREDVNVA----ALTELFGAKLGV 453
Query: 108 CYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVL 167
C P +R+Y C P + SNRV+
Sbjct: 454 CDNPC------WREY---------------------------------CMP-VERSNRVI 473
Query: 168 RHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG-----SSATDITRTRIYTRILSTLRNGI 222
RH+ D FLR++F DE + ++ L+ R + +T T +Y R+ + L G+
Sbjct: 474 RHYHELSDRFLRVTFTDEGMLPLNPNALTLRAVPSTSTPSTSRQMTSVYRRVQTALTEGL 533
Query: 223 LIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSF 282
++ R++ FLAFS+SQL++ SAW FA T A I+EWMG F IRN AK+AAR+G F
Sbjct: 534 IMCGRRYSFLAFSASQLKQKSAWFFAEDGATTVAGIKEWMGQF-PIRNPAKHAARMGLCF 592
Query: 283 SSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN-PPSA 341
+SS T+++ E++ D++ ++ + Y FSDGIG ++ + A +VA L D PSA
Sbjct: 593 TSSYATVTMQPGEVD--EDLE-DVTRNGYNFSDGIGVITEDLALEVAEMLPLADRFAPSA 649
Query: 342 FQIRYGGYKGVVAA-------DPTSSKKLSLR 366
+QIR ++ A P S+++L+ R
Sbjct: 650 YQIRREVFEETRVAMARSRTRSPESTRRLAHR 681
>gi|8248473|gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidopsis thaliana]
Length = 1196
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 345/880 (39%), Positives = 503/880 (57%), Gaps = 57/880 (6%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 110
+ +EI+F +N ++ G L F+ L+ V+I+ ++H C Y+
Sbjct: 325 GISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQPKDVNIASLKHL---------CTYK 375
Query: 111 PSRWLTDQYRKY-MTSRSKPSSPAI----SLDDGLVYVHRVQVTPSRVYFCGPEINVSNR 165
R + D Y++ + +P + + + + R+ +TP+R Y PE+ +SNR
Sbjct: 376 --RPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDISEIRRLVITPTRAYCLPPEVELSNR 433
Query: 166 VLRHFRRDIDNFLRISFIDEDLDKIHSTDLS-------PRGSSATDITRTRIYTRILSTL 218
VLR ++ + FLR++F+DE + I+S LS +S++ +T ++ R+ S L
Sbjct: 434 VLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQKTYVFKRVKSIL 493
Query: 219 RNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARL 278
+G + RK+ FLAFS++QLR+ SAW FA ++I+ WMG F++ +NVAK AAR+
Sbjct: 494 TDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKFKD-KNVAKCAARM 552
Query: 279 GQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 337
G FSS+ T+ V E++ +PD++ + YVFSDGIG ++ + A +V K L +
Sbjct: 553 GLCFSSTYATVDVMPHEVDTEVPDIE----RNGYVFSDGIGTITPDLAGEVMEKLKLDVH 608
Query: 338 -PPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNR 394
P A+QIRY G+KGVVA P+ S +L+LRDSM+K S+ T L++ +W+++QP FLNR
Sbjct: 609 YSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKIFSKHTILEICSWTRFQPGFLNR 668
Query: 395 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICG 454
Q+I+LLS LG+ EIF Q + +LD IL D A E L S E N +L G
Sbjct: 669 QIITLLSVLGVPVEIFWDMQESMLYKLDRILVDTDVAFEVLT-ASCAEQGNTAAIMLSAG 727
Query: 455 YKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGA 514
+KP EP L ML + R ++L LR K+RIF+ +GR +MGCLDE L +GQ F+Q+S
Sbjct: 728 FKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHGQCFIQVSKP 787
Query: 515 GYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVF 574
+ + +V+G V +AKNPCLHPGDVR+L+AV+VP LHHM DC++F
Sbjct: 788 SIENCFSKHGSRFKETKKDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQLHHMYDCLIF 847
Query: 575 PQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD--PPMDYTPAQSMQLDHDVQIEDV 632
PQKG RPH NE SGSDLDGD+YFV WD +LIPP + P M Y A+ L V +D+
Sbjct: 848 PQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSLGRAVNHQDI 907
Query: 633 EEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPP 692
++F + N+ LG I NAH V ADR A E CL LAE + AVDFPKTG +P
Sbjct: 908 IDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPKTGKIVSMPF 967
Query: 693 HLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRS---YDPD 749
HL K YPDFM K D TY+S ++G+L+R VK++ + ++E S YD
Sbjct: 968 HLKPKLYPDFMGKEDYQTYKSNKILGRLYRPVKEVYDEDA--EASSEESTDPSAIPYDAV 1025
Query: 750 MEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD--AE 807
+E+ GFED I +A HK +YD +L L+ Y ++ E EI+TG I M K +K++ E
Sbjct: 1026 LEIPGFEDLIPEAWGHKCSYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQGELKE 1085
Query: 808 AIGMAVRALRKEARAWFKE-----KSGSDTEDDAY--AKASAWYHVTYHPDYWGCYNQGM 860
+ + +L+KE R F+E ++ S+ E + KASAWYHVTYHP++ +
Sbjct: 1086 RLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWVKKSLELQ 1145
Query: 861 NRDH-----FLSFPWCVYDRLVEIK---KDKTSIGNAFPA 892
+ D LSF W D L IK ++ SI +A P
Sbjct: 1146 DPDESSHAAMLSFAWIAADYLARIKIRSREMGSIDSAKPV 1185
>gi|413954935|gb|AFW87584.1| hypothetical protein ZEAMMB73_985632 [Zea mays]
Length = 1241
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 343/868 (39%), Positives = 497/868 (57%), Gaps = 51/868 (5%)
Query: 48 DGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLK-E 106
D L + L+ +N+L+ NG V + F+ L+ R V+++ AL +L+ K
Sbjct: 384 DDAGLRFPELYLVNVLMHNGVVNPHQMTPEFFGLLMRTREDVNVA----ALTELFGAKLG 439
Query: 107 CCYEPSRWLTDQYRKY-----MTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEIN 161
C P L + + + RS SS D V R+ VTP+R Y P++
Sbjct: 440 VCDNPCWRLKNAQDRAAKNLDLVCRSSSSSRRRKASDCDAEVRRLIVTPTREYCIPPQVE 499
Query: 162 VSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG-----SSATDITRTRIYTRILS 216
SNRV+RH+ D FLR++F DE + ++ L+ R + +T T +Y R+ +
Sbjct: 500 RSNRVIRHYHELSDRFLRVTFTDEGMLPLNPNALTLRAVPSTSTPSTSRQMTSVYRRVQT 559
Query: 217 TLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAA 276
L G+++ R++ FLAFS+SQL++ SAW FA T A I+EWMG F IRN AK+AA
Sbjct: 560 ALTEGLIMCGRRYSFLAFSASQLKQKSAWFFAEDGATTVAGIKEWMGQF-PIRNPAKHAA 618
Query: 277 RLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD 336
R+G F+SS T+++ E++ D++ ++ + Y FSDGIG ++ + A +VA L D
Sbjct: 619 RMGLCFTSSYATVTMQPGEVD--EDLE-DVTRNGYNFSDGIGVITEDLALEVAEMLPLAD 675
Query: 337 N-PPSAFQIRYGGYKGVVAADPTS-------SKKLSLRDSMRKYESELTKLDVLAWSKYQ 388
PSA+QIRY G+KGVVA P ++++SLR SMRK+ES T L+V++W+K+Q
Sbjct: 676 RFAPSAYQIRYAGFKGVVAVWPPGPGQEDRGTRRMSLRPSMRKFESTHTVLEVVSWTKFQ 735
Query: 389 PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILK 448
P FLNRQ+I+LL+TLG+ D+ F + Q + +L +L+D A E + P E +
Sbjct: 736 PAFLNRQIITLLTTLGVPDDAFWQLQEAMLGKLRRVLSDSDVAYEVVINSCP-EQGSTAG 794
Query: 449 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 508
+L G+ P EP L ML S++ L KT IF+P GR +MGCLDE L GQ F
Sbjct: 795 LMLGAGFAPATEPHLRAMLLAICTSQMQGLLNKTWIFVPKGRWLMGCLDEFGILEQGQCF 854
Query: 509 VQIS--GAGYRQLHGESSLFSSS--RSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 564
+++S G R ++ S +F S ++ G VV+AKNPCLHPGDVR+L+AV+VP
Sbjct: 855 LRVSTPSVGSRCVN-RSPIFPSEYKGDADAQVITGTVVMAKNPCLHPGDVRILEAVDVPD 913
Query: 565 LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQ 622
L+H+VDC VFP+KG RPH +E SGSDLDGD+YFV WD+ L+PP + PMDY+PA++ Q
Sbjct: 914 LYHLVDCFVFPKKGERPHADEASGSDLDGDVYFVTWDESLVPPGRKSCTPMDYSPAKTKQ 973
Query: 623 LDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFP 682
L DV +D +++ +V D+LG I NAH ADR A C++LA SIAVD
Sbjct: 974 LPRDVHQQDTIDFYLESMVYDNLGRICNAHAAHADRSDDGAMDPKCIELARLASIAVDSA 1033
Query: 683 KTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAV-----KDIAPHTSCIRLF 737
KTG +PP L KEYPDFM K D +Y S+ ++G+L+R+V D +CI
Sbjct: 1034 KTGEIVRMPPALSPKEYPDFMGKEDAISYRSEKILGRLYRSVLGENDGDFLSRDACI--- 1090
Query: 738 TKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMS 797
+ E+ YD D+EV G D + DA + Y+ +L L+D Y + +EAE++TG I ++
Sbjct: 1091 SDEI---RYDADLEVLGASDFLQDAWRCRCLYEARLNALLDQYDVCSEAELVTGEIWSLA 1147
Query: 798 KSFTK--RRDAEAIGMAVRALRKEARAWFKE-KSGSDTEDDAY-AKASAWYHVTYHPDYW 853
K + E I A L +E R+ F+ + +D ++ AY KASAWY VTYHP+
Sbjct: 1148 GCSKKYHHQLKERINYAYSNLHQEFRSIFESIDASTDNKNLAYEMKASAWYQVTYHPEII 1207
Query: 854 GCYNQG-MNRDHFLSFPWCVYDRLVEIK 880
G + LSF W D L +IK
Sbjct: 1208 RSREPGDEDAPTRLSFAWIAVDYLAQIK 1235
>gi|449467491|ref|XP_004151456.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
Length = 401
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 258/403 (64%), Positives = 309/403 (76%), Gaps = 16/403 (3%)
Query: 492 MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 551
MMGCLDET+TL YGQVFV S G S F+V+G +VVAKNPCLHP
Sbjct: 1 MMGCLDETQTLEYGQVFVHCSIPG-------------RSSEGNFVVKGKIVVAKNPCLHP 47
Query: 552 GDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP 611
GDVRVL AV+V ALHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD EL +Q
Sbjct: 48 GDVRVLDAVDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQVK 107
Query: 612 PMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQL 671
PM Y PA ++QLDHDV IE+V+EYF NY+VND LG IANAHTVFAD+ +KA S C++L
Sbjct: 108 PMSYKPAPTIQLDHDVTIEEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSVECIKL 167
Query: 672 AEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHT 731
A+ FSIAVDFPKTGVPA +P +L V EYPDFM+KP+KPTY S V+GKLFR VKD++
Sbjct: 168 AKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDV 227
Query: 732 SCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTG 791
S +FT+EVA + YDPDMEVDGFE ++ +A +K YD+KLGNLMDYYGIKTE E+++G
Sbjct: 228 SAFEIFTREVATKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSG 287
Query: 792 SIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTED---DAYAKASAWYHVTY 848
+I+KM+KSF KR+D E I A+++LRKE R WF E T D D YA+ASAWY VTY
Sbjct: 288 NILKMAKSFDKRKDLEQIAFAMKSLRKEVRFWFNENESKSTYDDIQDEYARASAWYCVTY 347
Query: 849 HPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNAFP 891
HPDYWGCYN+G RDHFLSFPWCV D+L++IK++K S+ N+ P
Sbjct: 348 HPDYWGCYNEGTKRDHFLSFPWCVADKLIQIKREKMSMRNSSP 390
>gi|316989903|gb|ADU77017.1| RNA-dependent RNA polymerase 1c [Cucumis sativus]
Length = 400
Score = 527 bits (1357), Expect = e-146, Method: Compositional matrix adjust.
Identities = 255/402 (63%), Positives = 307/402 (76%), Gaps = 16/402 (3%)
Query: 493 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 552
MGCLDET+TL YGQVFV S G S F+V+G VVVAKNPCLHPG
Sbjct: 1 MGCLDETQTLEYGQVFVHCSIPG-------------RSSEGNFVVKGKVVVAKNPCLHPG 47
Query: 553 DVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPP 612
DVR+L A++V ALHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD EL +Q P
Sbjct: 48 DVRLLDAIDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQVKP 107
Query: 613 MDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLA 672
M Y PA ++QLDHDV IE+V+EYF NY+VND LG IANAHTVFAD+ +KA S C++LA
Sbjct: 108 MSYKPAPTIQLDHDVTIEEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLA 167
Query: 673 EKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTS 732
+ FSIAVDFPKTGVPA +P +L V EYPDFM+KP+K TY S V+GKLFR VKD++ S
Sbjct: 168 KLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKATYVSNGVLGKLFRGVKDVSSDVS 227
Query: 733 CIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGS 792
+FT+EVA + YDPDMEVDGFE ++ +A +K YD+KLGNLMDYYGIKTE E+++G+
Sbjct: 228 AFEIFTREVATKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGN 287
Query: 793 IMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTED---DAYAKASAWYHVTYH 849
I+KM+KSF KR+D E I A+++LRKE R WF E T D D YA+ASAWY VTYH
Sbjct: 288 ILKMAKSFDKRKDLEQIAFAMKSLRKEVRFWFNENESKSTYDDIQDEYARASAWYCVTYH 347
Query: 850 PDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNAFP 891
PDYWGCYN+G RDHFLSFPWCV D+L++IK++K S+ N+ P
Sbjct: 348 PDYWGCYNEGTKRDHFLSFPWCVADKLIQIKREKMSMRNSSP 389
>gi|260803900|ref|XP_002596827.1| hypothetical protein BRAFLDRAFT_99723 [Branchiostoma floridae]
gi|229282087|gb|EEN52839.1| hypothetical protein BRAFLDRAFT_99723 [Branchiostoma floridae]
Length = 1922
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 322/783 (41%), Positives = 445/783 (56%), Gaps = 66/783 (8%)
Query: 125 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 184
+R+ + A L D VY +V VTP+++ F PE V NRV+R + +DNF+R++F D
Sbjct: 390 ARTTGPNDADDLPDHYVYARKVVVTPTQMLFLKPEPIVENRVVREY--GVDNFIRVAFRD 447
Query: 185 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 244
ED +K+ +P +S +T TR+ L+ GI IG R FE+L S+SQ+RE
Sbjct: 448 EDFNKL----TAPNPNSIKCVT-----TRVKDVLQRGIRIGGRHFEYLGSSNSQMREHGC 498
Query: 245 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDE--IEIIPDV 302
WM+A+ T ++IR WMG+ R VA Y +RLGQ FSSS++ ++V +++ + +I DV
Sbjct: 499 WMYAAEDETTTSDIRAWMGDLSHERCVATYVSRLGQFFSSSRDAVNVSVEDRSVALIDDV 558
Query: 303 KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT--SS 360
+ +Y FSDGIGK+S A KVA+ G+ PSAFQIRYGG KGV+A DP+ +
Sbjct: 559 TS--SQRRYTFSDGIGKISVPLAEKVAAALGVSP-VPSAFQIRYGGCKGVLAQDPSLGHT 615
Query: 361 KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQ 420
+ +R SM+K+ESE L+V + + LNRQ I+LLS LG+ DE F K Q + Q
Sbjct: 616 DLIHIRGSMKKFESEHKTLEVTSVTTPGSLSLNRQAITLLSGLGVPDEEFFKLQERVLNQ 675
Query: 421 LDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRT 480
L +L A +AL G N L I EPF ML +++ EL
Sbjct: 676 LAEMLLLDGAAVKALSGARVGINFQALHNSRIS---LTTEPFFRSMLLAVYRNQMGELLR 732
Query: 481 KTRIFIP--NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ 538
+TRI +P GR MMG +DET L YGQVF+Q S R ++ + Q
Sbjct: 733 RTRIQLPAGEGRIMMGTMDETGKLQYGQVFLQYSRETDRP------------QAEKIVHQ 780
Query: 539 GLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 598
G V V KNPC HPGD+R AV+VP L HMVDC+VFP +G RPHP+E SGSDLDGD+YFV
Sbjct: 781 GQVTVTKNPCFHPGDMRKFTAVDVPELRHMVDCIVFPSRGPRPHPDEMSGSDLDGDMYFV 840
Query: 599 CWDDELIPPQQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFAD 657
W + LI P+++ P MD+T L VQ+ D+ E+F YI ND LG+IANAH V AD
Sbjct: 841 TWREGLILPRENIPAMDFTAQPKKVLRRPVQVSDMIEFFAEYIRNDQLGLIANAHLVHAD 900
Query: 658 REPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVI 717
+E + SE C++LA+ S AVDFPKTG E+ L +YPDFM K DKP Y S+ +I
Sbjct: 901 KETKGIFSERCMELAKLHSDAVDFPKTGQCPELKGDLRPDKYPDFMMKSDKPQYRSEKII 960
Query: 718 GKLFRAVKDIAPHTSCIRLFTKE--VARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGN 775
GKLFR + + + F+ + V D D+ +GFE + DDA Y+ K+ +
Sbjct: 961 GKLFRQCQAL----DNAQRFSPDPVVEDDGVDQDLIREGFESYTDDAQTQLNIYNTKIRS 1016
Query: 776 LMDYYGIKTEAEILTGSIMKMSKSFTKRRD-----AEAIGMAVRALRKEARAWF------ 824
+M YGI +E E+++G I+K+ + ++ E + + L ++ RA F
Sbjct: 1017 IMSLYGISSEGEVVSGCILKVKQRLGLLKNERFEVTEYVRARFKTLWRKTRAEFFRQFDE 1076
Query: 825 KEKSGSD-TEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDH-----FLSFPWCVYDRLVE 878
KE+S +D ++ KASAWY VTY DY N+ H LSFPW VYD L
Sbjct: 1077 KEESSTDRRREEQLKKASAWYMVTYSDDY-------NNKPHGASPKLLSFPWVVYDVLGG 1129
Query: 879 IKK 881
+KK
Sbjct: 1130 LKK 1132
>gi|222618586|gb|EEE54718.1| hypothetical protein OsJ_02054 [Oryza sativa Japonica Group]
Length = 1571
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 320/862 (37%), Positives = 465/862 (53%), Gaps = 87/862 (10%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 110
L + +LF +N LV G + L F+ L+ V+++ + + + + C
Sbjct: 739 GLKFPLLFMVNALVHKGIINQHQLTPEFFSLLGRSEENVNVAALRDFWGDKFPVFDACGR 798
Query: 111 PSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF 170
+ L R P + D V R+ +TP+R Y PE+ SNRVLRH+
Sbjct: 799 LKKALNRVARN-------PKLLCSKVGDDHAEVRRLVITPTRAYCLPPEVERSNRVLRHY 851
Query: 171 RRDIDNFLRISFIDEDLDKIHSTDL-SPRGSSATDIT------RTRIYTRILSTLRNGIL 223
D FLR++F+DE + +++ L S D+ +T +Y R+ L G
Sbjct: 852 HEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFH 911
Query: 224 IGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFS 283
+ RK+ FLAFSS+QLR+ SAW FA T IR+WMG F +NVAK+AAR+GQ FS
Sbjct: 912 MCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKWMGRFTS-KNVAKHAARMGQCFS 970
Query: 284 SSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQ 343
S+ T+++ DE++ D ++ +Y+FSDGIGK++ + A +VA + L DNPPSA+Q
Sbjct: 971 STYATVTMRPDEVDESFD---DVVHNEYIFSDGIGKITPDLALEVAERLQLTDNPPSAYQ 1027
Query: 344 IRYGGYKGVVAA--DPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLS 401
IR+ G+KGV+A +L LR SMRK+ES L+V++W+K+QP FLNRQ+I LLS
Sbjct: 1028 IRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLVLEVVSWTKFQPGFLNRQIIILLS 1087
Query: 402 TLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEP 461
+L + D IF + Q + L+ IL+D A E L S ++ N +L G++P EP
Sbjct: 1088 SLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVLT-TSCADDGNTAALMLSAGFEPRTEP 1146
Query: 462 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI---SGAGYRQ 518
L ML R+++L +L K RIF+P GR +MGCLDE L GQ F++ S Y
Sbjct: 1147 HLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGVLEQGQCFIRATVPSLNSYFV 1206
Query: 519 LHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 578
HG S FSS+ I+ G V KG
Sbjct: 1207 KHG--SRFSSTDKNTEVIL-GTV-----------------------------------KG 1228
Query: 579 MRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDHDVQIEDVEEYF 636
RPH NE SGSDLDGD+YFV WD++LIPP + PMDY+P ++ QL V D+ ++F
Sbjct: 1229 ERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFF 1288
Query: 637 TNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYV 696
+++++LG I NAH V AD A E C+ LAE + AVDFPKTG A +PPHL
Sbjct: 1289 LKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKP 1348
Query: 697 KEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRS---YDPDMEVD 753
K YPDFM K D +Y+S+ ++G+L+R++++ S + ++EV + YD D+EV
Sbjct: 1349 KVYPDFMGKEDGQSYKSEKILGRLYRSIQE----ASNGDVVSQEVCTPNDLPYDIDLEVP 1404
Query: 754 GFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD--AEAIGM 811
G D + A K +YD +L L+ Y ++TEAE++TG I + K+ +K++ + +
Sbjct: 1405 GASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHITFLVKNSSKKQGDIKDRLKT 1464
Query: 812 AVRALRKEARAWFKEKS------GSDTEDDAY-AKASAWYHVTYHPDYWGCYNQGM---- 860
A ALRKE ++ F+ + G D ++ Y KASAWY VTYHP W ++G+
Sbjct: 1465 AYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPK-WVEKSRGILGPD 1523
Query: 861 --NRDHFLSFPWCVYDRLVEIK 880
LSF W D L IK
Sbjct: 1524 GEEIPASLSFAWIPVDYLARIK 1545
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 99/212 (46%), Gaps = 14/212 (6%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 110
L + +LF +N LV G + L F+ L+ V+++ + + + + C
Sbjct: 306 GLKFPLLFMVNALVHKGIINQHQLTPEFFSLLGRSEENVNVAALRDFWGDKFPVFDACGR 365
Query: 111 PSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF 170
+ L R P + D V R+ +TP+R Y PE+ SNRVLRH+
Sbjct: 366 LKKALNRVARN-------PKLLCSKVGDDHAEVRRLVITPTRAYCLPPEVERSNRVLRHY 418
Query: 171 RRDIDNFLRISFIDEDLDKIHSTDL-SPRGSSATDIT------RTRIYTRILSTLRNGIL 223
D FLR++F+DE + +++ L S D+ +T +Y R+ L G
Sbjct: 419 HEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFH 478
Query: 224 IGDRKFEFLAFSSSQLRESSAWMFASRYGLTA 255
+ RK+ FLAFSS+QLR+ SAW FA TA
Sbjct: 479 MCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTA 510
>gi|260789117|ref|XP_002589594.1| hypothetical protein BRAFLDRAFT_81564 [Branchiostoma floridae]
gi|229274774|gb|EEN45605.1| hypothetical protein BRAFLDRAFT_81564 [Branchiostoma floridae]
Length = 1867
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 308/779 (39%), Positives = 433/779 (55%), Gaps = 77/779 (9%)
Query: 136 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 195
L D VY +V VTP+++ F PE V NRV+R + +DNF+R++F DED K+
Sbjct: 379 LPDHYVYARKVVVTPTQMLFLKPEPIVENRVVREY--GVDNFIRVAFRDEDFSKL----- 431
Query: 196 SPRGSSATDITRTRIYT-RILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS--RYG 252
+ T+ R T R+ L GI IG+R F++L S+SQ+RE WM+A+ +
Sbjct: 432 -----AVTNPNSIRCVTSRVKDVLEKGIRIGERNFKYLGSSNSQMREHGCWMYAAADKTT 486
Query: 253 LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDE--IEIIPDVKIEIGKTK 310
+ ++IR WMG+ R VA Y +RLGQ FSSS +SV +++ +E+I DV+ G
Sbjct: 487 TSTSDIRGWMGDLSHERCVATYVSRLGQFFSSSWNAVSVSVEDRSVELIADVETSSGT-- 544
Query: 311 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT--SSKKLSLRDS 368
+ FSDGIGK+S A+KVA+ G+ PSAFQIRY G KGV+A DPT ++ ++ +R S
Sbjct: 545 HTFSDGIGKISVPLAKKVAAALGVSP-VPSAFQIRYAGCKGVLAQDPTLGNTDRIQIRGS 603
Query: 369 MRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 428
M+K+ESE L+V + + LNRQ I+LLS L + D F K Q + QL +L
Sbjct: 604 MKKFESEHKTLEVTSVTTPGVLSLNRQAITLLSGLNVPDMEFLKLQERVLNQLAEMLILD 663
Query: 429 LKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP- 487
A +AL G + L + G EPF ML +++ EL +TRI IP
Sbjct: 664 EAAVKALSGARVGMDIRALHD---SGISLTTEPFFRSMLLAVYRNRMGELLRRTRIEIPA 720
Query: 488 -NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 546
GR MMG +DET L YGQVF+Q S R++ + + + QG V V KN
Sbjct: 721 GEGRIMMGTMDETGKLQYGQVFIQYS----REVDKPQA--------DKVVHQGQVTVTKN 768
Query: 547 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIP 606
PC HPGD+R AV+VP L HMVDC+VFP +G RPHP+E SGSDLDGD+YFV W + LI
Sbjct: 769 PCFHPGDMRKFTAVDVPELRHMVDCIVFPSRGPRPHPDEMSGSDLDGDMYFVTWREGLIL 828
Query: 607 PQQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARS 665
P+++ P MD+T L VQ D+ E+F YI ++ LG+IANAH V AD+E + S
Sbjct: 829 PRENRPAMDFTAQPKRVLHRPVQESDMIEFFAEYIGSNQLGLIANAHLVHADKEDQGIFS 888
Query: 666 EPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVK 725
+ C+ LA+ S AVD PKTG E+ L + YPDFM K DKP Y S+ +IG+LFR +
Sbjct: 889 QKCIDLAQLHSDAVDAPKTGQCPELKGDLRPEVYPDFMMKSDKPQYRSERIIGRLFRKCQ 948
Query: 726 ------------DIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKL 773
DI HTS I D D+ +GF+ +I+DA Y+ +
Sbjct: 949 ELDSANQRSGTDDIVYHTSGI------------DHDLVREGFDSYIEDAQTQLNIYNNMM 996
Query: 774 GNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD-----AEAIGMAVRALRKEARAWF---- 824
++M YGI +E E+++G I+K+ + ++ E + + L ++ RA F
Sbjct: 997 MSIMSLYGITSEGEVVSGCILKVKQRLGLLKNERFEVTEYVRARFKTLWRKTRAEFFKQF 1056
Query: 825 --KEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKK 881
+E S +++ +ASAWY VTY Y + + LSFPW VYD L +KK
Sbjct: 1057 DVEELSEERRKEEQLKRASAWYMVTYSDAYDEKPHDPSPK--LLSFPWVVYDVLASLKK 1113
>gi|384245028|gb|EIE18524.1| RdRP-domain-containing protein, partial [Coccomyxa subellipsoidea
C-169]
Length = 723
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 299/748 (39%), Positives = 426/748 (56%), Gaps = 63/748 (8%)
Query: 159 EINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYT-RILST 217
++ +SNRV+RH R+ D FLR++F +E+ ++ A DI R Y R+
Sbjct: 1 QVELSNRVIRHHRQYSDRFLRVTFCEENGGRL---------CFANDIPRLEDYMDRMEGI 51
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESSAWMFAS-RYGLTAAEIREWMGNFREIRNVAKYAA 276
L++G+ + DR F+ LAFSS Q+RE SAW +A+ G TAA+IR WMG+F IR VAK+ A
Sbjct: 52 LKDGLELADRHFDLLAFSSGQVREQSAWFWAAPDSGPTAADIRAWMGDFDAIRCVAKFTA 111
Query: 277 RLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC-GLK 335
R+GQ FSS+ +TL + ++ +PDV+ + Y FSDG+G++S E +R VA + L
Sbjct: 112 RMGQCFSSTVDTLKLQAYTVQTVPDVE----RNGYCFSDGVGRISVELSRAVADRLEQLG 167
Query: 336 DNP----PSAFQIRYGGYKGVVAAD-PTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPC 390
P P A+QIRY G KG+V+ K+ +R SM K+E+ L++ +++Y P
Sbjct: 168 RCPAGWLPRAYQIRYAGCKGMVSLHMGLRGKRFEVRPSMNKFEASAQMLEICDYARYVPG 227
Query: 391 FLNRQLISLL--STLGIWDEIFEKKQ-REAVRQLDAILTDPLKAQEALELMSPGENTNIL 447
+LNRQ+++LL LG+ + +F++ Q R A+ L+ + L+ L L+ G+ +L
Sbjct: 228 YLNRQIVTLLMQKCLGVPNSVFQRLQARTALFNLNK--SGQLRC-FCLNLIKWGDAAIML 284
Query: 448 K--ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYG 505
+ ++ G+ EP+L +L RA L +L+ KTR+ +P +MG +DE L G
Sbjct: 285 EAAHIIRAGFDVGTEPYLKSILLCLRAHLLQDLKAKTRVRVPKAALLMGVMDEEGVLEPG 344
Query: 506 QVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA---VNV 562
QVF+ ++ L IV G VVVAKNPC HPGDVR +A
Sbjct: 345 QVFLSVNSLPTMALPA--------------IVTGTVVVAKNPCFHPGDVRKFQARPLFRS 390
Query: 563 PALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI-PPQQDPPMDYTPAQSM 621
P LHH+V+C+VFPQKG RPHP+ECSGSDLDGD YFV W+ L+ P PM + +Q
Sbjct: 391 PELHHLVNCLVFPQKGQRPHPDECSGSDLDGDQYFVSWEPGLLFPGPNREPMSFH-SQDP 449
Query: 622 QLDHDVQ---IEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIA 678
L + Q + DV ++F +YI ND LGIIANAH AD +P A+ CLQLA S A
Sbjct: 450 VLIPEGQASLVGDVAQFFMDYIFNDLLGIIANAHLATADIKPDGAQCSQCLQLARLHSNA 509
Query: 679 VDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFT 738
VDF K+G PAE L YPDFM K +K T+ES +IG+LFRA+ P L +
Sbjct: 510 VDFTKSGRPAEFSRDLRPLSYPDFMMKKNKETHESSTIIGQLFRAITVPTPP-----LLS 564
Query: 739 KEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSK 798
+ DPD+ V+GF+ I A + Y++ L +M+ YG+ EAEI++G I K +K
Sbjct: 565 DIASETQPDPDIMVEGFQQFIPAAQEARTRYEHALVQIMNQYGVHNEAEIVSGCISKFAK 624
Query: 799 SFTKRRDAEAIGM-AVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDY--WGC 855
K+ D + + + AVRALRK+ RA F + + A KA AWYHVTY P Y +G
Sbjct: 625 HRRKKGDVKTMIIDAVRALRKKNRAEFPGPLAARSR-RALQKACAWYHVTYSPAYSGYGP 683
Query: 856 YNQGMNRD---HFLSFPWCVYDRLVEIK 880
R+ +SFPW + D L IK
Sbjct: 684 AAALSTRELDARLISFPWILTDHLAVIK 711
>gi|291228412|ref|XP_002734181.1| PREDICTED: RNA-dependent RNA polymerase Family family member
(rrf-3)-like [Saccoglossus kowalevskii]
Length = 1491
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 302/780 (38%), Positives = 440/780 (56%), Gaps = 86/780 (11%)
Query: 142 YVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSS 201
Y+ RV VTPSR+ F PE+ NRVLR + + R+ F DE+ + LS S
Sbjct: 383 YLRRVMVTPSRLIFLQPELMFENRVLRRYSEEY--CARLVFKDENYQR-----LSNPVSI 435
Query: 202 ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS-RYGLTAAEIRE 260
++D+ +I+STL+NG + DR +EFLA S+SQLRE W +A +G TAA IRE
Sbjct: 436 SSDVA-----NKIISTLQNGFQVADRNYEFLACSNSQLREHGCWFYAKDNHGNTAANIRE 490
Query: 261 WMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI--IPDVK--IEIGKTKYVFSDG 316
WMG+F +IR VA Y +R+GQ FS+S+ET++V ++++ + I D+ ++I + Y FSDG
Sbjct: 491 WMGDFSKIRCVATYMSRMGQCFSTSEETVNVTVEDVTVSNIEDITGGMDINQKPYCFSDG 550
Query: 317 IGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESE 375
IGK+S + K+ K K SA+QIRY G KG+VA DP+ + +++ +R SM K+ SE
Sbjct: 551 IGKISKQLIEKICEKTE-KHVVASAYQIRYAGSKGMVALDPSLTGEQIMIRKSMLKFPSE 609
Query: 376 LTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL 435
++++ +K LNRQ+I++LS LGI D++F K Q R L+ + LK A
Sbjct: 610 HDNIEIMNLTKPARLHLNRQVITILSGLGIEDKVFLKLQH---RMLNNLANMFLKEDVAA 666
Query: 436 ELMSPGENTNI-LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSM 492
+S I K ++ CG EPF +LQ S L ELR + RI +P R+M
Sbjct: 667 AWLSRRSQIGINFKHMMTCGISLTTEPFFKSLLQAVYKSLLGELRRRARIILPPQFARNM 726
Query: 493 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 552
MG +DET L YGQVF+Q S ++L +++ + G VVV K PC HPG
Sbjct: 727 MGVIDETGALQYGQVFIQYS----KKL--------DKPQKEKIVHSGPVVVTKFPCYHPG 774
Query: 553 DVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD-P 611
DVR +AV++PAL+H++DC+VFP++G RPHPNE +GSDLDGD YFV W EL+ +++
Sbjct: 775 DVRKFQAVDIPALYHLIDCIVFPRQGPRPHPNEMAGSDLDGDEYFVTWLPELLFDRENHE 834
Query: 612 PMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQL 671
M + A +L + V++ D+ ++ T YI ND LG++ANAH AD++ S+ CL +
Sbjct: 835 AMPFPAAVKKELTNPVEVADMIKFVTEYIQNDCLGLMANAHLAMADQQSDGIFSDMCLNI 894
Query: 672 AEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHT 731
+ S AVDF KTG + + YPDFM K DK Y+S++++GKL+R + T
Sbjct: 895 CKLLSEAVDFAKTGNCPTLDKNQQPNTYPDFMGKQDKTNYKSKHILGKLYRHCWSLESAT 954
Query: 732 SCIRLFTKEVARRSYDPD-------MEVD------GFEDHIDDAIYHKGNYDYKLGNLMD 778
++ SY D +EVD G+E+H+ A Y+ +L LM
Sbjct: 955 ------IPKLRAHSYHKDSDYDVRNVEVDQSLLYPGYEEHLSFANKSLKKYNNQLRLLMS 1008
Query: 779 YYGIKTEAEILTGSIMKMSKSFT---KRRDAEAIGMAVRA-LRKEARAWF------KEKS 828
YGI++EAE ++G I K++K T +R DAE + A A LR R F +
Sbjct: 1009 QYGIESEAEAISGCITKLNKRITGKGERFDAEKVIRAKLAHLRSVTRREFDSSFGDEANG 1068
Query: 829 GSDTEDD-------AYAKASAWYHVTYHPDYWGCYNQGMNRD-HFLSFPWCVYDRLVEIK 880
GSD +D+ AKASA+Y+VTY RD +SFPW V D L +++
Sbjct: 1069 GSDNDDEDEERNDKILAKASAFYYVTYS-----------QRDTQLISFPWVVADLLRKVR 1117
>gi|312283345|dbj|BAJ34538.1| unnamed protein product [Thellungiella halophila]
Length = 998
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 280/685 (40%), Positives = 402/685 (58%), Gaps = 41/685 (5%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 110
+ +EI+F +N ++ G + L F+ L+ V+I+ ++H C Y
Sbjct: 325 GISFEIMFLVNSVLHRGVLNQFQLTERFFDLLRNQPKDVNIASLKHL---------CTY- 374
Query: 111 PSRWLTDQYRKY-MTSRSKPSSPAISLD----DGLVYVHRVQVTPSRVYFCGPEINVSNR 165
+R + D Y++ + +P + + D + + R+ +TP+R Y PE+ +SNR
Sbjct: 375 -NRPVFDAYKRLKLVQEWVLKNPKLLVSHERSDDISEIRRLVITPTRAYCLPPEVELSNR 433
Query: 166 VLRHFRRDIDNFLRISFIDEDLDKIHSTDLS-------PRGSSATDITRTRIYTRILSTL 218
VLR ++ + FLR++F+DE + ++S LS +S++ +T ++ R+ + L
Sbjct: 434 VLRKYKAVSERFLRVTFMDESMQTMNSNVLSYFVAPIVKDLTSSSFSQKTHVFKRVKTLL 493
Query: 219 RNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARL 278
+G + RK+ FLAFSS+QLR+ SAW F+ ++I+ WMG F++ +NVAK AAR+
Sbjct: 494 TDGFKLCGRKYSFLAFSSNQLRDRSAWFFSEDGNTRVSDIKIWMGKFKD-KNVAKCAARM 552
Query: 279 GQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 337
G FSS+ T+ V E++ +P EI + Y FSDGIG +S + A +V K L +
Sbjct: 553 GLCFSSTYATVDVMPHEVDTELP----EIERNGYTFSDGIGTISPDLADEVMEKLKLDVH 608
Query: 338 -PPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNR 394
P A+QIRY G+KGVVA P+ +L+LR SM K+ S+ T L++ +W+++QP FLNR
Sbjct: 609 YTPCAYQIRYAGFKGVVARWPSKGDGIRLALRHSMNKFHSKHTILEICSWTRFQPGFLNR 668
Query: 395 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICG 454
Q+ISLLS LG+ DEIF Q + +L+ IL D A E L S E N +L G
Sbjct: 669 QIISLLSVLGVPDEIFWDMQESMLCKLNRILDDIDVAFEVLT-TSCAEQGNTAAIMLSAG 727
Query: 455 YKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGA 514
+KP EP L ML + R ++L LR K+RIF+ +GR +MGCLDE L GQ F+Q+S
Sbjct: 728 FKPKIEPHLRGMLSSVRTAQLWGLREKSRIFVSSGRWLMGCLDEAGILEQGQCFIQVSKP 787
Query: 515 GYRQL---HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDC 571
HG S F S++ + +V+G V +AKNPCLHPGDVR+L+AV+VP LH M DC
Sbjct: 788 SIENCFSRHG--SRFKESKADMQ-VVKGYVAIAKNPCLHPGDVRILEAVDVPQLHDMYDC 844
Query: 572 VVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDHDVQI 629
++FPQ G RPH NE SGSDLDGD+YFV WD +LIPP ++ M Y A+ L V
Sbjct: 845 LIFPQNGDRPHTNEASGSDLDGDLYFVAWDQKLIPPSRESWHAMQYDAAKEKTLGRPVNH 904
Query: 630 EDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAE 689
+D+ ++F + N+ LG I NAH V ADR A E CL LAE + AVDFPKTG
Sbjct: 905 QDIIDFFVKNMANEHLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPKTGKIVS 964
Query: 690 IPPHLYVKEYPDFMEKPDKPTYESQ 714
+P HL K YPDFM K D TY S+
Sbjct: 965 MPFHLKPKLYPDFMGKEDYQTYLSK 989
>gi|260801473|ref|XP_002595620.1| hypothetical protein BRAFLDRAFT_64730 [Branchiostoma floridae]
gi|229280867|gb|EEN51632.1| hypothetical protein BRAFLDRAFT_64730 [Branchiostoma floridae]
Length = 1282
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 312/787 (39%), Positives = 421/787 (53%), Gaps = 87/787 (11%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
V RV VTP+R+ F PEI NR+LR + D NF+R+S DED K+ SA
Sbjct: 257 VRRVFVTPTRLMFMHPEIVRDNRILRKYGED--NFMRVSIRDEDFCKL----------SA 304
Query: 203 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM 262
+TR+ L++G+L+GDRK+ FLA S+SQLRE + W FAS TA IR+ M
Sbjct: 305 VGGEEETTFTRVKKFLQDGLLVGDRKYVFLAASNSQLREHNVWFFASDGKNTAESIRKDM 364
Query: 263 GNFREIRNVAKYAARLGQSFSSSKETLS--VHMDEIEIIPDVKIEIGKTKYVFSDGIGKV 320
G+F +I+ A AR+GQ FS+++ +++ + E+ IP+VK Y FSDGIGK+
Sbjct: 365 GDFSDIKCPATVLARMGQCFSNTEPSVTALISAGEVVRIPEVKGGYPNV-YCFSDGIGKI 423
Query: 321 SAEFARKVASKCGL---KDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESEL 376
S A+KV + + + PSA+QIRYGG KGVVA DP+ S + +R SM K+ S
Sbjct: 424 SQSLAQKVNERRAIGRGETEVPSAYQIRYGGVKGVVAVDPSLDSDVMEVRPSMMKFLSFD 483
Query: 377 TKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE 436
++++ S +LNRQ+I++LS LG+ D+ F++ Q ++ L +L A E+++
Sbjct: 484 QQIEICMTSHPGRLYLNRQVITILSALGVPDQTFQQLQEAMLQNLSDMLVREDVAFESMK 543
Query: 437 LMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP--NGRSMMG 494
+ L L CG EPF MLQ L ELR + RI IP GR+M+G
Sbjct: 544 RRAQPLGLP-LGRLSRCGLHVTTEPFFRAMLQKMFTCFLGELRRRARIEIPPEYGRNMLG 602
Query: 495 CLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDV 554
LDET TL YGQVFVQ + E +++ V G VVV +NPC HPGD+
Sbjct: 603 VLDETGTLEYGQVFVQYT---------EDITDKGGQTK----VTGDVVVTRNPCFHPGDL 649
Query: 555 RVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP-PM 613
R L+AV++P+LHHMVD +VFP KG RPHPNE SG DLDGD +FV W LI P+ + PM
Sbjct: 650 RKLRAVDIPSLHHMVDVIVFPSKGPRPHPNEMSGGDLDGDQFFVTWYPGLIFPKPNQGPM 709
Query: 614 DYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAE 673
D+T +L V+ D+ ++ YI ND LG IANAH FA E S CL LA+
Sbjct: 710 DFTAQPKKELP-SVETHDIIDFIVEYIANDRLGQIANAHLAFAHTEKEGIFSSKCLGLAK 768
Query: 674 KFSIAVDFPKTGVPAEIPPHLYVKEYPDFM-EKPDKPTYESQNVIGKLFRAVKDIAPHTS 732
K S AVDFPKTGV + EYPDFM +K K + S+ V GK++R
Sbjct: 769 KHSDAVDFPKTGVCPTLKMEERPLEYPDFMGKKKGKTSRRSEAVQGKMYR---------E 819
Query: 733 CIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDY-------------KLGNLMDY 779
C+R+ E D + G ID HK Y KL +LM
Sbjct: 820 CLRI---ERVCSHLHKDKDTGGKNIEIDPDFTHKDRKRYAVSSRQAKDDFYDKLQDLMSQ 876
Query: 780 YGIKTEAEILTGSIMKMSKSFT---KRRDAEAIGM-AVRALRKEARA-WFKEKSGSDTED 834
YGI TEAE ++G ++M +R +AE I + LRK+ R +F E G D+ D
Sbjct: 877 YGIDTEAEAVSGCFVRMHHHMEDRYERFEAERIAKDRIAHLRKQTRQEFFAEFGGEDSID 936
Query: 835 ------DAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTSIGN 888
+ AKASAWYH +Y + LSFPW V D L E+KK T
Sbjct: 937 LDHCPENVMAKASAWYHASY----------STGNPNLLSFPWVVADVLAELKKRAT---R 983
Query: 889 AFPALEQ 895
+ P +EQ
Sbjct: 984 SSPIVEQ 990
>gi|238015130|gb|ACR38600.1| unknown [Zea mays]
Length = 525
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 239/521 (45%), Positives = 330/521 (63%), Gaps = 26/521 (4%)
Query: 369 MRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 428
M+K+ES+ T L++ WSK QPC++NR++ISLLSTLGI DE+FE Q++ + + D +LT+
Sbjct: 1 MKKFESKSTMLNITNWSKSQPCYVNREIISLLSTLGIKDEVFESMQQDDMHESDGMLTNK 60
Query: 429 LKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN 488
A L + G +T ++L+ GY+P +EP+L M+L+ RA++L ++RT+ +I +
Sbjct: 61 EAALSVLGKIGGG-DTKTAADMLLQGYEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQK 119
Query: 489 GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 548
GR ++GCLDET L YGQV+++I+ Q + E F + + IV G V + KNPC
Sbjct: 120 GRVLIGCLDETCKLEYGQVYIRITKNHKEQKYSEQPFFCNDDGKTAVIV-GKVAITKNPC 178
Query: 549 LHPGDVRVLKAVNVPAL--HHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIP 606
LHPGDVRVL+AV P L ++DCVVFPQ+G RPHPNECSG DLDGD++F+ WDD+LIP
Sbjct: 179 LHPGDVRVLEAVYDPGLDARGLIDCVVFPQRGERPHPNECSGGDLDGDLFFITWDDKLIP 238
Query: 607 PQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSE 666
+ D PMDYT + +DH V +E+++++F +Y++ND+LG I+ AH + ADR+P KARS
Sbjct: 239 EKVDAPMDYTATRPRIMDHAVTLEEIQKHFVSYMINDTLGAISTAHLIHADRDPLKARSP 298
Query: 667 PCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKD 726
C+QLA S+AVDF KTG PAE+P L +E+PDFME+ ++P Y S V+GKL+RA
Sbjct: 299 ECVQLAALHSMAVDFAKTGAPAEMPLALRPREFPDFMERWERPMYVSNGVLGKLYRAA-- 356
Query: 727 IAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEA 786
+ L YDPD+EV GF++ +D A Y +LG LM YY + E
Sbjct: 357 LRHEEDAEALLPAGPPSCVYDPDLEVAGFDEFLDAAEERYEAYAERLGALMTYYSAERED 416
Query: 787 EILTGSIMKMSKSFTKRRD-------AEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAK 839
EILTG+I +K RRD + I AV AL E R W + + EDDA
Sbjct: 417 EILTGNI--RNKLVYLRRDNKRYFEMKDRIIAAVDALHAEVRGWLR----ACKEDDASRV 470
Query: 840 ASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIK 880
ASAWYHVTYHPD G F SFPW + D L+ IK
Sbjct: 471 ASAWYHVTYHPDRRG-------EKRFWSFPWIICDTLLAIK 504
>gi|317151427|ref|XP_001824654.2| RNA-directed RNA polymerase (Sad-1) [Aspergillus oryzae RIB40]
Length = 1403
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 283/814 (34%), Positives = 437/814 (53%), Gaps = 48/814 (5%)
Query: 50 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 109
+ LP+++ +++ + + NG ++ + F + ++ +EH K K+ Y
Sbjct: 384 VHLPFQVRYQLEVCISNGYLSEFTMTREFAVKLSELGETQAVKLLEHVSAK----KQVYY 439
Query: 110 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 169
+P + ++ K +T P Y+H ++TPS +Y+ P +++SNRV+R
Sbjct: 440 DPMKIFDLKFIKGVTQAKIPPY--------CCYMHSARITPSTIYYNTPTVDISNRVIRR 491
Query: 170 FRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKF 229
F D FLR+ F DE L R +S TD T I+TRI L NGI+IGDR++
Sbjct: 492 FIEHADRFLRVRFTDEKL--------LGRINSTTDSTMDEIFTRIKRALTNGIVIGDRRY 543
Query: 230 EFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 289
EFLAF +SQ RE A+ FA LTAA IR WMG+F IRNVAK+AARLGQ FS+++
Sbjct: 544 EFLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAIA 603
Query: 290 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD---NPPSAFQIRY 346
+D ++I ++ + Y FSDG+G++S A+ S+ +K PPSAFQ R
Sbjct: 604 GCPVDVVKI-----EDVERNGYNFSDGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFRL 658
Query: 347 GGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGI 405
GG KG++A + ++ + +R S K+ + L+++ WS++ LNRQLI +LSTLGI
Sbjct: 659 GGCKGMLAVSSEAQRQEVHIRKSQFKFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLGI 718
Query: 406 WDEIFEKKQREAVRQLD-AILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLS 464
D++F K ++ LD A+ +DP + + P + T + ++++ G++ EPFL+
Sbjct: 719 PDQVFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFLT 778
Query: 465 MMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESS 524
+L +RA L L+ K RI + G ++GC+DET L G ++ G ++
Sbjct: 779 SVLTLWRAWHLKYLKEKARIAVDQGACLLGCMDETGLLQ-GYFHDKVPGNDASVEEKTAA 837
Query: 525 L----FSSSR---SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQK 577
L SR ++ +++G+ ++A+NP LHPGD+RV++AVNVP L H+ D VV PQ
Sbjct: 838 LPEIFVQVSRPEADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQLRHLQDVVVLPQT 897
Query: 578 GMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ-DPPMDYTPAQSMQLDHDVQIEDVEEYF 636
G R + CSG DLDGD Y V WD +L+P PM YT ++ LD DV + D+ +F
Sbjct: 898 GDRDIASMCSGGDLDGDDYIVIWDQDLLPKDWFREPMKYTSNKAQDLDRDVTVNDITSFF 957
Query: 637 TNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYV 696
Y+ ND L IA+AH AD E C++LA+ S AVD+ KTG+PA + +L
Sbjct: 958 VTYMKNDFLPRIAHAHLALADFLEDGVNEEKCIRLAQLHSDAVDYNKTGIPAILTRNLEP 1017
Query: 697 KEYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVD 753
+++P FMEK +KP Y S ++G+L+ AV+ I S F K + + E++
Sbjct: 1018 RKWPHFMEKFNKPKDRIYHSNKILGQLYDAVERIDFVPSLEMPFDKRLL------NCEIE 1071
Query: 754 GFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAV 813
+D + A KG YD + +M + IKTE EI + ++ + + + E IG
Sbjct: 1072 VPDDLLTFAKNLKGQYDDAMRRIMAQHEIKTEFEIWSTFVLGHANTSKDYKFHEEIGAIS 1131
Query: 814 RALRKEARAWFKEKSGSDTEDDAYAKASAWYHVT 847
LR + EK G D A A Y VT
Sbjct: 1132 ATLRDTFKKQCYEKVGGRNFDQLAPLALAMYRVT 1165
>gi|238505489|ref|XP_002383969.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus flavus
NRRL3357]
gi|220690083|gb|EED46433.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus flavus
NRRL3357]
Length = 1353
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 283/814 (34%), Positives = 437/814 (53%), Gaps = 48/814 (5%)
Query: 50 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 109
+ LP+++ +++ + + NG ++ + F + ++ +EH K K+ Y
Sbjct: 334 VHLPFQVRYQLEVCISNGYLSEFTMTREFAVKLSELGETQAVKLLEHVSAK----KQVYY 389
Query: 110 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 169
+P + ++ K +T P Y+H ++TPS +Y+ P +++SNRV+R
Sbjct: 390 DPMKIFDLKFIKGVTQAKIPPY--------CCYMHSARITPSTIYYNTPTVDISNRVIRR 441
Query: 170 FRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKF 229
F D FLR+ F DE L R +S TD T I+TRI L NGI+IGDR++
Sbjct: 442 FIEHADRFLRVRFTDEKL--------LGRINSTTDSTMDEIFTRIKRALTNGIVIGDRRY 493
Query: 230 EFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 289
EFLAF +SQ RE A+ FA LTAA IR WMG+F IRNVAK+AARLGQ FS+++
Sbjct: 494 EFLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAIA 553
Query: 290 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD---NPPSAFQIRY 346
+D ++I ++ + Y FSDG+G++S A+ S+ +K PPSAFQ R
Sbjct: 554 GCPVDVVKI-----EDVERNGYNFSDGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFRL 608
Query: 347 GGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGI 405
GG KG++A + ++ + +R S K+ + L+++ WS++ LNRQLI +LSTLGI
Sbjct: 609 GGCKGMLAVSSEAQRQEVHIRKSQFKFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLGI 668
Query: 406 WDEIFEKKQREAVRQLD-AILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLS 464
D++F K ++ LD A+ +DP + + P + T + ++++ G++ EPFL+
Sbjct: 669 PDQVFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFLT 728
Query: 465 MMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESS 524
+L +RA L L+ K RI + G ++GC+DET L G ++ G ++
Sbjct: 729 SVLTLWRAWHLKYLKEKARIAVDQGACLLGCMDETGLLQ-GYFHDKVPGNDASVEEKTAA 787
Query: 525 L----FSSSR---SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQK 577
L SR ++ +++G+ ++A+NP LHPGD+RV++AVNVP L H+ D VV PQ
Sbjct: 788 LPEIFVQVSRPEADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQLRHLQDVVVLPQT 847
Query: 578 GMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ-DPPMDYTPAQSMQLDHDVQIEDVEEYF 636
G R + CSG DLDGD Y V WD +L+P PM YT ++ LD DV + D+ +F
Sbjct: 848 GDRDIASMCSGGDLDGDDYIVIWDQDLLPKDWFREPMKYTSNKAQDLDRDVTVNDITSFF 907
Query: 637 TNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYV 696
Y+ ND L IA+AH AD E C++LA+ S AVD+ KTG+PA + +L
Sbjct: 908 VTYMKNDFLPRIAHAHLALADFLEDGVNEEKCIRLAQLHSDAVDYNKTGIPAILTRNLEP 967
Query: 697 KEYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVD 753
+++P FMEK +KP Y S ++G+L+ AV+ I S F K + + E++
Sbjct: 968 RKWPHFMEKFNKPKDRIYHSNKILGQLYDAVERIDFVPSLEMPFDKRLL------NCEIE 1021
Query: 754 GFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAV 813
+D + A KG YD + +M + IKTE EI + ++ + + + E IG
Sbjct: 1022 VPDDLLTFAKNLKGQYDDAMRRIMAQHEIKTEFEIWSTFVLGHANTSKDYKFHEEIGAIS 1081
Query: 814 RALRKEARAWFKEKSGSDTEDDAYAKASAWYHVT 847
LR + EK G D A A Y VT
Sbjct: 1082 ATLRDTFKKQCYEKVGGRNFDQLAPLALAMYRVT 1115
>gi|391863075|gb|EIT72389.1| RNA-directed RNA polymerase QDE-1 [Aspergillus oryzae 3.042]
Length = 1458
Score = 454 bits (1168), Expect = e-124, Method: Compositional matrix adjust.
Identities = 283/814 (34%), Positives = 437/814 (53%), Gaps = 48/814 (5%)
Query: 50 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 109
+ LP+++ +++ + + NG ++ + F + ++ +EH K K+ Y
Sbjct: 439 VHLPFQVRYQLEVCISNGYLSEFTMTREFAVKLSELGETQAVKLLEHVSAK----KQVYY 494
Query: 110 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 169
+P + ++ K +T P Y+H ++TPS +Y+ P +++SNRV+R
Sbjct: 495 DPMKIFDLKFIKGVTQAKIPPY--------CCYMHSARITPSTIYYNTPTVDISNRVIRR 546
Query: 170 FRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKF 229
F D FLR+ F DE L R +S TD T I+TRI L NGI+IGDR++
Sbjct: 547 FIEHADRFLRVRFTDEKL--------LGRINSTTDSTMDEIFTRIKRALTNGIVIGDRRY 598
Query: 230 EFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 289
EFLAF +SQ RE A+ FA LTAA IR WMG+F IRNVAK+AARLGQ FS+++
Sbjct: 599 EFLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAIA 658
Query: 290 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD---NPPSAFQIRY 346
+D ++I ++ + Y FSDG+G++S A+ S+ +K PPSAFQ R
Sbjct: 659 GCPVDVVKI-----EDVERNGYNFSDGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFRL 713
Query: 347 GGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGI 405
GG KG++A + ++ + +R S K+ + L+++ WS++ LNRQLI +LSTLGI
Sbjct: 714 GGCKGMLAVSSEAQRQEVHIRKSQFKFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLGI 773
Query: 406 WDEIFEKKQREAVRQLD-AILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLS 464
D++F K ++ LD A+ +DP + + P + T + ++++ G++ EPFL+
Sbjct: 774 PDQVFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFLT 833
Query: 465 MMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESS 524
+L +RA L L+ K RI + G ++GC+DET L G ++ G ++
Sbjct: 834 SVLTLWRAWHLKYLKEKARIAVDQGACLLGCMDETGLLQ-GYFHDKVPGNDASVEEKTAA 892
Query: 525 L----FSSSR---SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQK 577
L SR ++ +++G+ ++A+NP LHPGD+RV++AVNVP L H+ D VV PQ
Sbjct: 893 LPEIFVQVSRPEADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQLRHLQDVVVLPQT 952
Query: 578 GMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ-DPPMDYTPAQSMQLDHDVQIEDVEEYF 636
G R + CSG DLDGD Y V WD +L+P PM YT ++ LD DV + D+ +F
Sbjct: 953 GDRDIASMCSGGDLDGDDYIVIWDQDLLPKDWFREPMKYTSNKAQDLDRDVTVNDITSFF 1012
Query: 637 TNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYV 696
Y+ ND L IA+AH AD E C++LA+ S AVD+ KTG+PA + +L
Sbjct: 1013 VTYMKNDFLPRIAHAHLALADFLEDGVNEEKCIRLAQLHSDAVDYNKTGIPAILTRNLEP 1072
Query: 697 KEYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVD 753
+++P FMEK +KP Y S ++G+L+ AV+ I S F K + + E++
Sbjct: 1073 RKWPHFMEKFNKPKDRIYHSNKILGQLYDAVERIDFVPSLEMPFDKRLL------NCEIE 1126
Query: 754 GFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAV 813
+D + A KG YD + +M + IKTE EI + ++ + + + E IG
Sbjct: 1127 VPDDLLTFAKNLKGQYDDAMRRIMAQHEIKTEFEIWSTFVLGHANTSKDYKFHEEIGAIS 1186
Query: 814 RALRKEARAWFKEKSGSDTEDDAYAKASAWYHVT 847
LR + EK G D A A Y VT
Sbjct: 1187 ATLRDTFKKQCYEKVGGRNFDQLAPLALAMYRVT 1220
>gi|83773394|dbj|BAE63521.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1458
Score = 454 bits (1167), Expect = e-124, Method: Compositional matrix adjust.
Identities = 283/814 (34%), Positives = 437/814 (53%), Gaps = 48/814 (5%)
Query: 50 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 109
+ LP+++ +++ + + NG ++ + F + ++ +EH K K+ Y
Sbjct: 439 VHLPFQVRYQLEVCISNGYLSEFTMTREFAVKLSELGETQAVKLLEHVSAK----KQVYY 494
Query: 110 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 169
+P + ++ K +T P Y+H ++TPS +Y+ P +++SNRV+R
Sbjct: 495 DPMKIFDLKFIKGVTQAKIPPY--------CCYMHSARITPSTIYYNTPTVDISNRVIRR 546
Query: 170 FRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKF 229
F D FLR+ F DE L R +S TD T I+TRI L NGI+IGDR++
Sbjct: 547 FIEHADRFLRVRFTDEKL--------LGRINSTTDSTMDEIFTRIKRALTNGIVIGDRRY 598
Query: 230 EFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 289
EFLAF +SQ RE A+ FA LTAA IR WMG+F IRNVAK+AARLGQ FS+++
Sbjct: 599 EFLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAIA 658
Query: 290 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD---NPPSAFQIRY 346
+D ++I ++ + Y FSDG+G++S A+ S+ +K PPSAFQ R
Sbjct: 659 GCPVDVVKI-----EDVERNGYNFSDGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFRL 713
Query: 347 GGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGI 405
GG KG++A + ++ + +R S K+ + L+++ WS++ LNRQLI +LSTLGI
Sbjct: 714 GGCKGMLAVSSEAQRQEVHIRKSQFKFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLGI 773
Query: 406 WDEIFEKKQREAVRQLD-AILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLS 464
D++F K ++ LD A+ +DP + + P + T + ++++ G++ EPFL+
Sbjct: 774 PDQVFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFLT 833
Query: 465 MMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESS 524
+L +RA L L+ K RI + G ++GC+DET L G ++ G ++
Sbjct: 834 SVLTLWRAWHLKYLKEKARIAVDQGACLLGCMDETGLLQ-GYFHDKVPGNDASVEEKTAA 892
Query: 525 L----FSSSR---SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQK 577
L SR ++ +++G+ ++A+NP LHPGD+RV++AVNVP L H+ D VV PQ
Sbjct: 893 LPEIFVQVSRPEADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQLRHLQDVVVLPQT 952
Query: 578 GMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ-DPPMDYTPAQSMQLDHDVQIEDVEEYF 636
G R + CSG DLDGD Y V WD +L+P PM YT ++ LD DV + D+ +F
Sbjct: 953 GDRDIASMCSGGDLDGDDYIVIWDQDLLPKDWFREPMKYTSNKAQDLDRDVTVNDITSFF 1012
Query: 637 TNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYV 696
Y+ ND L IA+AH AD E C++LA+ S AVD+ KTG+PA + +L
Sbjct: 1013 VTYMKNDFLPRIAHAHLALADFLEDGVNEEKCIRLAQLHSDAVDYNKTGIPAILTRNLEP 1072
Query: 697 KEYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVD 753
+++P FMEK +KP Y S ++G+L+ AV+ I S F K + + E++
Sbjct: 1073 RKWPHFMEKFNKPKDRIYHSNKILGQLYDAVERIDFVPSLEMPFDKRLL------NCEIE 1126
Query: 754 GFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAV 813
+D + A KG YD + +M + IKTE EI + ++ + + + E IG
Sbjct: 1127 VPDDLLTFAKNLKGQYDDAMRRIMAQHEIKTEFEIWSTFVLGHANTSKDYKFHEEIGAIS 1186
Query: 814 RALRKEARAWFKEKSGSDTEDDAYAKASAWYHVT 847
LR + EK G D A A Y VT
Sbjct: 1187 ATLRDTFKKQCYEKVGGRNFDQLAPLALAMYRVT 1220
>gi|115402503|ref|XP_001217328.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114189174|gb|EAU30874.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1309
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 284/816 (34%), Positives = 438/816 (53%), Gaps = 49/816 (6%)
Query: 48 DGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKEC 107
D I LP+ + +++ + + NG ++ + F + + +EH + K
Sbjct: 365 DYIHLPFSVRYQLEVCISNGYLSEYAMTREFAVKLSELGETQATKLLEHVATQ----KRV 420
Query: 108 CYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVL 167
Y+P + ++ K T+ P Y+ +VTPS VY+ P +++SNR++
Sbjct: 421 YYDPMKIFDLKFIKGATNAKIPPY--------CCYIRSARVTPSTVYYETPSMDMSNRII 472
Query: 168 RHFRRDIDNFLRISFIDEDL-DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGD 226
RH+ D FLR+ F DE L +I+ST TD T ++TR+ L NGI+IGD
Sbjct: 473 RHYIEYADRFLRVRFTDEKLLGRIYST---------TDNTMDEVFTRVKRALANGIVIGD 523
Query: 227 RKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSK 286
R++EFLAF +SQ RE A+ FA LTAA IR WMG+F +IRNVAK+AARLGQ FS+++
Sbjct: 524 RRYEFLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFDDIRNVAKHAARLGQCFSTTR 583
Query: 287 ETLS--VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD---NPPSA 341
+ + EI+ +I + Y FSDG+G++S A+ V S+ +K PPS
Sbjct: 584 AIFGCPIKVQEID-------DIVRNGYRFSDGVGRISKFLAQMVMSELKIKTPSGEPPSV 636
Query: 342 FQIRYGGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLL 400
FQ R GG KG++ P + ++ + +R S K+ + L+++ WS++ LNRQLI +L
Sbjct: 637 FQFRLGGCKGILTVSPQAQRQEVHIRKSQAKFTATHNGLEIIRWSQFTAASLNRQLIIVL 696
Query: 401 STLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDA 459
STLGI D IF +K R + L+ L + KA L + P + T + ++++ G++
Sbjct: 697 STLGIRDRIFHEKLRAVLWGLNEALKNDAKAIHLLRRYVDPNQRTLTISQMVVDGFRRTE 756
Query: 460 EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL-NYGQVFVQISGAGYRQ 518
EPF + +L +RA L L+ K +I I G + GC+DET TL Y + A + Q
Sbjct: 757 EPFATSVLTLWRAWHLKYLKDKAKITIDKGACVFGCMDETGTLKGYFHEKIPDRDAPFEQ 816
Query: 519 -LHGESSLF----SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVV 573
+F + + + ++QG+ ++A+NP LH GD+RV+KAV+VPAL H+ D VV
Sbjct: 817 RFAALPEIFLQIPNQDKGGKYEVIQGMCILARNPSLHSGDIRVVKAVDVPALRHLQDVVV 876
Query: 574 FPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ-DPPMDYTPAQSMQLDHDVQIEDV 632
PQ G R + CSG DLDGD Y V WD +LIP PPM+YT ++ LD DV ++++
Sbjct: 877 LPQTGDRDIASMCSGGDLDGDDYVVIWDQDLIPKDWFRPPMNYTTNKARDLDRDVTVDEI 936
Query: 633 EEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPP 692
+F Y+ ND L IA+AH +ADR E C++LA+ S AVD+ K G PA +
Sbjct: 937 TSFFVTYMKNDCLPTIAHAHLAWADRLDNGVDEEKCIRLAQLHSDAVDYNKNGTPAHMTR 996
Query: 693 HLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEV 752
+L K +P FMEK + Y+S ++G+L+ AV+ + + + K RR + + V
Sbjct: 997 NLEPKLWPHFMEKKTEKVYKSGKILGQLYDAVERV----NFVPSLEKPFDRRILNSRIPV 1052
Query: 753 DGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMA 812
ED A K +YD L +M + IKTE E+ + ++ + + E IGM
Sbjct: 1053 A--EDLYQFARDMKKDYDIALRRIMAQHEIKTEFEVWSTFVLSHANMSKDYKFHEEIGML 1110
Query: 813 VRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTY 848
+LR+ + +K G D A A Y +T+
Sbjct: 1111 SSSLREGFKRECYDKVGGRGFDRVAPLALAMYRITH 1146
>gi|302505092|ref|XP_003014767.1| hypothetical protein ARB_07328 [Arthroderma benhamiae CBS 112371]
gi|291178073|gb|EFE33864.1| hypothetical protein ARB_07328 [Arthroderma benhamiae CBS 112371]
Length = 1296
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 270/815 (33%), Positives = 439/815 (53%), Gaps = 52/815 (6%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 111
+ Y + +++ + + +G ++ +D +F + ++ +E+ + K ++P
Sbjct: 227 ISYAVRYQLEVCISHGFLSEYTIDKDFAKKLESLGERDGKDLLEYVAQE----KTVYHDP 282
Query: 112 SRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFR 171
Q+ +T+R P Y+ VTPS +YF P ++ SNRV+RH+
Sbjct: 283 MEIFNIQFFSGVTNRRIPKY--------CCYMRSATVTPSTIYFNTPTVDTSNRVIRHYI 334
Query: 172 RDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEF 231
D FLR+ F DE + R +S + ++TR+ T+ NGI +GDR +EF
Sbjct: 335 EYADRFLRVRFTDEKYEG--------RINSTYNNCMDEVFTRVKRTMTNGITVGDRHYEF 386
Query: 232 LAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLS- 290
LAF +SQ RE A+ FAS LTAA IR WMG+F +I+ VAK+AARLGQ FS+++
Sbjct: 387 LAFGNSQFREHGAYFFASLPNLTAANIRAWMGHFSDIKIVAKHAARLGQCFSTTRAVTGC 446
Query: 291 -VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIRY 346
V + EI+ E+ + Y+FSDG+G++S A+ + ++ L+ + PPS FQ R
Sbjct: 447 PVTVREID-------EVERNGYIFSDGVGRISKFLAQMIMTEFKLQTPSEEPPSVFQFRL 499
Query: 347 GGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGI 405
GG KG++ P + ++ + +R S K+ + L+++ WS++ LNRQLI +LS LG+
Sbjct: 500 GGCKGILTVSPEAQRREVHIRKSQYKFAAIHNGLEIIRWSQFAAAHLNRQLIVVLSALGV 559
Query: 406 WDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYKPDAEPFLS 464
D IF +K R + L+ +T KA L+ + P + T +L +++ G++ +PF+
Sbjct: 560 SDNIFIEKLRLMLEDLEQAMTSETKAMSMLQKRVDPNQMTLLLAQMVHDGFQGSCDPFVK 619
Query: 465 MMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN--YGQVFVQISGAGYRQLHGE 522
+L+ +RA ++ L+ K ++FI G + GCLDET TL Y + I +L
Sbjct: 620 SLLELWRAWQIKYLKEKAKVFIDQGACLFGCLDETATLKGYYEKKRPSIEATYEERLEYL 679
Query: 523 SSLF----SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 578
+F + ++ +++G ++A+NP LHPGD+RV++AVNVPALHH+ D +VFPQ G
Sbjct: 680 PEIFVQVFDNEEEKKYRVIEGPCILARNPSLHPGDIRVVRAVNVPALHHLKDVIVFPQTG 739
Query: 579 MRPHPNECSGSDLDGDIYFVCWDDELIPPQQD---PPMDYTPAQSMQLDHDVQIEDVEEY 635
R P+ CSG DLDGD Y V WD +L+P +D PMDYT + + L DV + D+ +
Sbjct: 740 DRDVPSTCSGGDLDGDDYIVIWDQDLVPLPKDWFREPMDYTASNAQSLTRDVTVNDITSF 799
Query: 636 FTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLY 695
F Y+ ND L IA+AH FAD E C+QLA+ S AVD+ K+G+PA + L
Sbjct: 800 FVTYMKNDRLPQIAHAHLAFADYLEDGVNDERCIQLAQLHSAAVDYNKSGIPANMTRDLV 859
Query: 696 VKEYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEV 752
+++P FMEK KP Y+S+ ++G+++ V+ + F + R + D+ V
Sbjct: 860 PRKWPHFMEKKYKPKEAQYQSKKILGQIYDIVERVEFRPKLEAPFDE----RILNCDISV 915
Query: 753 DGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMA 812
E+ + A KG YD + +M + IKTE E+ + ++ + + E +G
Sbjct: 916 S--EEMVLAAKKLKGLYDADMRRIMAQHEIKTEFEVWSTFVLGHANMSKDYKFHEELGQI 973
Query: 813 VRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVT 847
ALR+ + ++++G A A Y VT
Sbjct: 974 SSALRERFLSMCQDEAGGRDFQHLAPLAVAMYRVT 1008
>gi|315047102|ref|XP_003172926.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
gi|311343312|gb|EFR02515.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
Length = 1455
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 273/815 (33%), Positives = 439/815 (53%), Gaps = 52/815 (6%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 111
+ Y + +++ + + +G ++ +D F + ++ + +E+ + H K ++P
Sbjct: 396 ISYVVRYQLEVCISHGLLSEYAIDKEFAKKLESLGERDAKDLLEY----VAHEKVVYHDP 451
Query: 112 SRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFR 171
+ Q+ +T+R P Y+ VTPS +YF P ++ SNRV+RH+
Sbjct: 452 MKIFDIQFFSGVTNRRIPKY--------CCYMRSATVTPSTIYFHTPTVDTSNRVIRHYI 503
Query: 172 RDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEF 231
D FLR+ F DE + R +S + ++TR+ T+ NG+++GDR +EF
Sbjct: 504 EYADRFLRVRFTDEKYEG--------RINSTYNNCMDEVFTRVKRTMTNGVIVGDRHYEF 555
Query: 232 LAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLS- 290
LAF +SQ RE A+ FAS LTA+ IR WMG+F +I+ VAK+AARLGQ FSS+K
Sbjct: 556 LAFGNSQFREHGAYFFASLPNLTASNIRAWMGHFSDIKIVAKHAARLGQCFSSTKAVTGC 615
Query: 291 -VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIRY 346
V + EI+ EI + Y FSDG+G++S A+ + ++ LK + PPS FQ R
Sbjct: 616 PVTIREID-------EIERNGYTFSDGVGRISKFLAQMIMTEFKLKTPSEEPPSVFQFRL 668
Query: 347 GGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGI 405
GG KG++ P + ++ + ++ S K+ + L+++ WS++ +LNRQLI +LS LG+
Sbjct: 669 GGCKGILTVSPEAQRREVHIKKSQYKFAAVHNGLEIIRWSQFAAAYLNRQLIVVLSALGV 728
Query: 406 WDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYKPDAEPFLS 464
DEIF KK R + ++ +T KA L+ + P + T +L +++ G++ ++PF++
Sbjct: 729 TDEIFIKKLRLMLEDMEQAMTSETKAMSLLQKQVDPNQMTLLLAQMVHDGFQGTSDPFVT 788
Query: 465 MMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL-NYGQVFVQISGAGYRQLHGE- 522
+L+ +RA ++ L+ K +I I G + GCLDET TL Y + A Y + G
Sbjct: 789 SLLELWRAWQIKYLKEKAKICIDGGACLFGCLDETATLKGYHEKTRPSIDATYEERLGYL 848
Query: 523 ----SSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 578
+F + R I++G ++A+NP LHPGD+RV++AVNVPALHH+ D +VF Q G
Sbjct: 849 PEIFVQVFDAEAERNYKIIEGPCILARNPSLHPGDIRVVRAVNVPALHHLKDVIVFSQTG 908
Query: 579 MRPHPNECSGSDLDGDIYFVCWDDELIPPQQD---PPMDYTPAQSMQLDHDVQIEDVEEY 635
R P+ CSG DLDGD Y V WD +L+P +D PMDYT + + L DV + D+ +
Sbjct: 909 DRDVPSTCSGGDLDGDDYIVIWDQDLVPLPKDWFRQPMDYTASNAQSLTRDVTVNDITSF 968
Query: 636 FTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLY 695
F Y+ ND L IA+AH FAD + C+QLA+ S AVD+ K+G+PA + L
Sbjct: 969 FVTYMKNDRLPQIAHAHLAFADFLEDGVNDKRCVQLAQLHSAAVDYNKSGIPANMTRDLV 1028
Query: 696 VKEYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEV 752
+++P FMEK KP Y S+ ++G+++ V+ + F + R + D+ V
Sbjct: 1029 PRKWPHFMEKKYKPKEAQYHSKKILGQIYDIVERVEFRPKLEAPFDE----RILNCDISV 1084
Query: 753 DGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMA 812
E+ + A K YD + +M + IKTE E+ + ++ + + E +G
Sbjct: 1085 S--EEMVLAAKKLKALYDADMRRIMAQHEIKTEFEVWSTFVLGHANMSKDYKFHEELGQI 1142
Query: 813 VRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVT 847
ALR+ +++G A A Y VT
Sbjct: 1143 SSALRERFLLMCHDEAGGKDFQHLAPLAVAMYRVT 1177
>gi|302658845|ref|XP_003021121.1| hypothetical protein TRV_04770 [Trichophyton verrucosum HKI 0517]
gi|291185002|gb|EFE40503.1| hypothetical protein TRV_04770 [Trichophyton verrucosum HKI 0517]
Length = 1587
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 266/815 (32%), Positives = 437/815 (53%), Gaps = 52/815 (6%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 111
+ Y + +++ + + +G ++ +D +F + ++ +E+ + K ++P
Sbjct: 518 ISYAVRYQLEVCISHGFLSEYTIDKDFAKKLESLGERDGKDLLEYVAQE----KTVYHDP 573
Query: 112 SRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFR 171
Q+ +T+R P Y+ VTPS +YF P ++ SNRV+RH+
Sbjct: 574 MEIFNIQFFSGVTNRRIPKY--------CCYMRSATVTPSTIYFNTPTVDTSNRVIRHYI 625
Query: 172 RDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEF 231
D FLR+ F DE + R +S + ++TR+ T+ NGI +GDR +EF
Sbjct: 626 EYADRFLRVRFTDEKYEG--------RINSTYNNCMDEVFTRVKRTMTNGITVGDRHYEF 677
Query: 232 LAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLS- 290
LAF +SQ RE A+ FAS LTAA IR WMG+F +I+ AK+AARLGQ FS+++
Sbjct: 678 LAFGNSQFREHGAYFFASLPNLTAANIRAWMGHFSDIKIAAKHAARLGQCFSTTRAVTGC 737
Query: 291 -VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIRY 346
V + EI+ E+ + Y+FSDG+G++S A+ + ++ L+ + PPS FQ R
Sbjct: 738 PVTVREID-------EVERNGYIFSDGVGRISKFLAQMIMTEFKLQTPSEEPPSVFQFRL 790
Query: 347 GGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGI 405
GG KG++ P + ++ + +R S K+ + L+++ WS++ LNRQLI +LS LG+
Sbjct: 791 GGCKGILTVSPEAQRREVHIRKSQYKFAAIHNGLEIIRWSQFAAAHLNRQLIVVLSALGV 850
Query: 406 WDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYKPDAEPFLS 464
D IF +K R + L+ +T KA L+ + P + T +L +++ G++ +PF+
Sbjct: 851 SDNIFIEKLRLMLEDLEQAMTSETKAMSMLQKRVDPNQMTLLLAQMVHDGFQGSCDPFVK 910
Query: 465 MMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN--YGQVFVQISGAGYRQLHGE 522
+L+ +RA ++ L+ K ++FI G + GCLDET TL Y + I +L
Sbjct: 911 SLLELWRAWQIKYLKEKAKVFIDQGACLFGCLDETATLKGYYEKKRPSIEATYEERLEYL 970
Query: 523 SSLF----SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 578
+F + ++ +++G ++A+NP LHPGD+RV++AVNVPALHH+ D +VFPQ G
Sbjct: 971 PEIFVQVFDNEEEKKYRVIEGPCILARNPSLHPGDIRVVRAVNVPALHHLKDVIVFPQTG 1030
Query: 579 MRPHPNECSGSDLDGDIYFVCWDDELIPPQQD---PPMDYTPAQSMQLDHDVQIEDVEEY 635
R P+ CSG DLDGD Y V WD +L+P +D PMDYT + + L DV + D+ +
Sbjct: 1031 DRDVPSTCSGGDLDGDDYIVIWDQDLVPLSKDWFREPMDYTASNAQSLTRDVTVNDITSF 1090
Query: 636 FTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLY 695
F Y+ ND L IA+AH FAD E C+QLA+ S AVD+ K+G+PA + L
Sbjct: 1091 FVTYMKNDRLPQIAHAHLAFADYLEDGVNDERCIQLAQLHSAAVDYNKSGIPANMTRDLV 1150
Query: 696 VKEYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEV 752
+++P FMEK KP Y+S+ ++G+++ V+ + F + + + ++
Sbjct: 1151 PRKWPHFMEKKYKPKEAQYQSKKILGQIYDIVERVEFRPKLEAPFDERIL------NCDI 1204
Query: 753 DGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMA 812
E+ + A KG YD + +M + IKTE E+ + ++ + + E +G
Sbjct: 1205 SVSEEMVLAAKKLKGLYDADMRRIMAQHEIKTEFEVWSTFVLGHANMSKDYKFHEELGQI 1264
Query: 813 VRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVT 847
ALR+ + ++++G A A Y VT
Sbjct: 1265 SSALRERFLSMCQDEAGGRDFQHLAPLAVAMYRVT 1299
>gi|119493033|ref|XP_001263772.1| RNA-directed RNA polymerase (Sad-1), putative [Neosartorya fischeri
NRRL 181]
gi|119411932|gb|EAW21875.1| RNA-directed RNA polymerase (Sad-1), putative [Neosartorya fischeri
NRRL 181]
Length = 1599
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 290/866 (33%), Positives = 460/866 (53%), Gaps = 62/866 (7%)
Query: 44 VGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYH 103
+G + LP+ + +++ + + + ++ + F + ++ +EH K
Sbjct: 578 LGDESYVHLPFPVRYQLEVCLSHNYLSEFTMTREFAVKLLELGESEAVKLLEHVAIK--- 634
Query: 104 LKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVS 163
KE ++P + ++ K T PS Y+ ++TP+ +Y+ P +++S
Sbjct: 635 -KEVYHDPMKIFDLKFAKGSTRAKIPSY--------CCYMRSARITPTTIYYNTPSVDIS 685
Query: 164 NRVLRHFRRDIDNFLRISFIDEDL-DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGI 222
NRV+R++ D FLR+ F DE L +I+ST D T ++TRI L NGI
Sbjct: 686 NRVIRYYIEYADRFLRVRFTDEKLLGRINST---------VDNTMDEVFTRIKRALANGI 736
Query: 223 LIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSF 282
+IGDR++EFLAF +SQ RE A+ FA LTAA IR WMG F +IRNVAK+AARLGQ F
Sbjct: 737 VIGDRRYEFLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGTFNDIRNVAKHAARLGQCF 796
Query: 283 SSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPP 339
S+++ + +I +I DV ++ G Y FSDG+G++S A+ AS+ +K D+PP
Sbjct: 797 STTRAIAGCPV-QIRLIDDV-VQNG---YTFSDGVGRISKFLAQMAASELKIKTPSDDPP 851
Query: 340 SAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLIS 398
SAFQ R GG KG++ P + ++ + +R S K+ + L+++ WS+Y LNRQLI
Sbjct: 852 SAFQFRLGGCKGMLTVSPEAQRQEVHIRKSQYKFAAVHNGLEIIRWSQYSMATLNRQLII 911
Query: 399 LLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKP 457
+LS+LGI D +F K R ++ L+ + +A L + + P + T ++ ++++ G++
Sbjct: 912 VLSSLGIQDRVFHDKLRAMLQSLNEAMESDSQALCWLKKYVDPNQMTLVVSQMVLDGFRS 971
Query: 458 DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG-Y 516
EPF++ +++ ++A L L+ K +I I G +++GC+DET L V GA
Sbjct: 972 SREPFVTSIMRLWKAWHLKYLKEKAKIVIEKGANLLGCMDETGILRGYSERVPAKGASDE 1031
Query: 517 RQLHGESSLFSSSR---SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVV 573
+L +F + + +++G+ ++A+NP LHPGD+RV++AVNVP L H+ D VV
Sbjct: 1032 EKLAALPEIFVQIHRPDTGKCEVIEGVCILARNPSLHPGDIRVVRAVNVPQLSHLKDVVV 1091
Query: 574 FPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ-DPPMDYTPAQSMQLDHDVQIEDV 632
FPQ G R P+ CSG DLDGD Y V WD +L+P M YT ++ LD DV + +
Sbjct: 1092 FPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLVPEDWFRKAMKYTSDKAQDLDQDVTVNHI 1151
Query: 633 EEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPP 692
+F Y+ ND L IA+AH +ADR E C++LA+ S AVD+ KTG PA +
Sbjct: 1152 TSFFVLYMKNDFLPRIAHAHLAWADRLEDGVNEEKCIRLAQLHSDAVDYNKTGKPANMTR 1211
Query: 693 HLYVKEYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPD 749
L K +P FMEK KP Y+S ++G+L+ AV+ I S F + + S +
Sbjct: 1212 SLQPKVWPHFMEKKHKPKERIYKSNKILGQLYDAVERIDFVPSLEMPFDERILTCSLGVN 1271
Query: 750 MEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAI 809
++ F + K +YD + +M + IKTE E+ + ++ S + E +
Sbjct: 1272 DDLVQFARDL------KADYDAAMHRIMAQHEIKTEFEVWSTFVLSHSNMSKDYKFHEEL 1325
Query: 810 GMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYH--------------PDYWGC 855
G+ +LR R EK G T + A A Y VT+ PD
Sbjct: 1326 GLISSSLRDMYRKKCYEKVGGRTFELLAPLAVAMYRVTHEEMTSALVKYRAENPPDGKLF 1385
Query: 856 YNQGMNRDH--FLSFPWCVYDRLVEI 879
+ DH F+SFPW +++ L +I
Sbjct: 1386 HKPTPRIDHLPFISFPWILHNILGKI 1411
>gi|146323311|ref|XP_754927.2| RNA-directed RNA polymerase (Sad-1) [Aspergillus fumigatus Af293]
gi|129558353|gb|EAL92889.2| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus fumigatus
Af293]
Length = 1423
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 282/860 (32%), Positives = 454/860 (52%), Gaps = 62/860 (7%)
Query: 50 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 109
+ LP+ + +++ + + + ++ + F + ++ +EH K +E +
Sbjct: 408 VHLPFPVRYQLEVCLSHNYLSEFTMSREFAVKLLNLGESEAVKLLEHVAIK----EEVYH 463
Query: 110 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 169
+P + ++ K T PS Y+ ++TP+ +Y+ P +++SNRV+R+
Sbjct: 464 DPMKIFDLKFAKGSTRAKIPSY--------CCYMRSARITPTTIYYNTPSVDISNRVIRY 515
Query: 170 FRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKF 229
+ D FLR+ F DE L R +S D T ++TRI L NGI+IGDR++
Sbjct: 516 YIEYADRFLRVRFTDEKLLG--------RINSTIDNTMDEVFTRIKRALANGIVIGDRRY 567
Query: 230 EFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 289
EFLAF +SQ RE A+ FA LTAA IR WMG F +IRNVAK+AARLGQ FS+++
Sbjct: 568 EFLAFGNSQFREHGAYFFAPLPSLTAANIRAWMGTFNDIRNVAKHAARLGQCFSTTRAIA 627
Query: 290 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD---NPPSAFQIRY 346
+ +I +I DV + Y FSDG+G++S A+ AS+ ++ +PPSAFQ R
Sbjct: 628 GCPV-QIRLIDDVV----RNGYTFSDGVGRISKFLAQMAASELKIRTPSGDPPSAFQFRL 682
Query: 347 GGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGI 405
GG KG++ P + ++ + +R S K+ S L+++ WS+Y LNRQLI +LS+LGI
Sbjct: 683 GGCKGMLTVSPEAQRQEVHIRKSQYKFASVHNGLEIIRWSQYSMATLNRQLIIVLSSLGI 742
Query: 406 WDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAEPFLS 464
D +F K R ++ L+ + +A L + + P + T ++ ++++ G++ EPF++
Sbjct: 743 QDSVFHDKLRAMLQSLNESMESDSQALCWLKKYVDPNQMTLVVSQMVLDGFRSSREPFVT 802
Query: 465 MMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG-YRQLHGES 523
+++ ++A L L+ K +I I G +++GC+DET L ++ GA +L
Sbjct: 803 SIMRLWKAWHLKYLKEKAKIVIEKGANLLGCMDETGILRGYSEWIPAKGASDEEKLAALP 862
Query: 524 SLFSSSR---SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 580
+F + + +++G+ ++A+NP LHPGD+RV++AVNVP L H+ D VVFPQ G R
Sbjct: 863 EIFVQIHHPDTGKCEVIEGVCILARNPSLHPGDIRVVRAVNVPQLSHLKDVVVFPQTGDR 922
Query: 581 PHPNECSGSDLDGDIYFVCWDDELIPPQQ-DPPMDYTPAQSMQLDHDVQIEDVEEYFTNY 639
P+ CSG DLDGD Y V WD +L+P PM YT ++ LD DV + + +F Y
Sbjct: 923 DIPSTCSGGDLDGDDYLVIWDQDLVPEDWFRKPMKYTSDKAQDLDQDVTVNHITSFFVLY 982
Query: 640 IVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEY 699
+ ND L IA+AH +ADR E C++LA+ S AVD+ KTG PA + L K +
Sbjct: 983 MKNDFLPRIAHAHLAWADRLEDGVNEEKCIRLAQLHSDAVDYNKTGKPANMARSLQPKVW 1042
Query: 700 PDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFE 756
P FMEK KP Y+S ++G+L+ AV+ I S F + + S ++ F
Sbjct: 1043 PHFMEKKHKPKEMIYKSNKILGQLYDAVERIDFVPSLEMPFDERILTCSLGVSDDLVQFA 1102
Query: 757 DHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRAL 816
+ K +YD + +M + I TE E+ + ++ S + E +G+ +L
Sbjct: 1103 RDL------KADYDAAMHRIMAQHEITTEFEVWSTFVLSHSNMSKDYKFHEELGLISSSL 1156
Query: 817 RKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDH------------ 864
R R EK G + + A A Y VT H + + +++H
Sbjct: 1157 RDMYRKKCYEKVGGRSFELLAPLAVAMYRVT-HEEMTSALEKCRSKNHSDGQLFHKPTPK 1215
Query: 865 -----FLSFPWCVYDRLVEI 879
F+SFPW +Y+ L +I
Sbjct: 1216 IDQLPFISFPWILYNILGKI 1235
>gi|121704872|ref|XP_001270699.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus clavatus
NRRL 1]
gi|119398845|gb|EAW09273.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus clavatus
NRRL 1]
Length = 1428
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 288/874 (32%), Positives = 453/874 (51%), Gaps = 90/874 (10%)
Query: 50 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 109
+ LP+ + +++ + + + ++ + F + ++ +EH K KE +
Sbjct: 415 VHLPFPVRYQLEVCISHNYLSEFTMTRGFAIKLSGLGEAEALRLLEHVATK----KEVFH 470
Query: 110 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 169
P + ++ K +T PS Y+ ++TP+ +Y+ P +++SNRV+RH
Sbjct: 471 NPMKIFDLKFVKGVTHAKIPSY--------CCYMRSARITPTTIYYNTPSVDISNRVIRH 522
Query: 170 FRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKF 229
+ D FLR+ F DE L R +S D T ++TRI L NGI++GDR++
Sbjct: 523 YIEFADRFLRVRFTDEKL--------FGRINSTMDDTMDEVFTRIKRALANGIVVGDRRY 574
Query: 230 EFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 289
EFLAF +SQ RE A+ FA LTAA IR WMG F +IRNVAK+AARLGQ FS+++ +
Sbjct: 575 EFLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGTFNDIRNVAKHAARLGQCFSTTR-AI 633
Query: 290 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIRY 346
S +I I DV + Y FSDG+G++S A+ VAS+ +K D PPSAFQ R
Sbjct: 634 SGCPVQIHKIDDVV----RNGYTFSDGVGRISRFLAQMVASELKIKTPIDEPPSAFQFRL 689
Query: 347 GGYKGVVAADPTSSK-KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGI 405
GG KG++ P + + ++ +R S K+ + L+++ WS++ LNRQLI +LS+LGI
Sbjct: 690 GGCKGMLTVSPEAQRHEVHIRKSQYKFAAAHNGLEIIRWSQFSMATLNRQLIIVLSSLGI 749
Query: 406 WDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAEPFLS 464
D++F +K + +R L+ + +A L + + P + T + ++++ G++ EPF++
Sbjct: 750 PDQVFHEKLQAMLRSLNEAMESDSQAIYWLKKYVDPNQMTLTVSQMVLDGFRRTQEPFVT 809
Query: 465 MMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL-------------------NYG 505
+L+ +RA L L+ K +I I G +++GC+DET L +
Sbjct: 810 SVLRLWRAWHLKYLKEKAKIAIDKGANLLGCMDETGILKGYFENVPAKDAPREKKLTSLP 869
Query: 506 QVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 565
+VFVQI LH ES + I++G+ ++A+NP LHPGD+RV++AVNVP L
Sbjct: 870 EVFVQI-------LHPESGKYQ--------IIEGVCILARNPSLHPGDIRVVRAVNVPEL 914
Query: 566 HHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ-DPPMDYTPAQSMQLD 624
H+ D VVFPQ G R P+ CSG DLDGD Y V WD +LIP PM YT ++ L+
Sbjct: 915 SHLKDVVVFPQTGDRDVPSMCSGGDLDGDDYLVIWDQDLIPKDWFRIPMKYTSDKAQDLN 974
Query: 625 HDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKT 684
DV ++ + +F Y+ ND L IA+AH +ADR C++LA+ S AVD+ KT
Sbjct: 975 QDVTVDHITSFFVIYMKNDFLPRIAHAHLAWADRLEYGVNEGKCIRLAQLHSDAVDYNKT 1034
Query: 685 GVPAEIPPHLYVKEYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIRLFTKEV 741
G PA + L K +P FMEK KP Y S ++G+L+ AV+ + S F + +
Sbjct: 1035 GRPANMTRSLQPKMWPHFMEKKHKPKERIYRSGKILGQLYDAVERVDFVPSLEMPFDERI 1094
Query: 742 ARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFT 801
+ + +D + A K +YD + +M + I+TE E+ + ++ +
Sbjct: 1095 LK------CRLQVSDDLMQTARDLKADYDAAMHRIMAQHEIRTEFEVWSTFVLSHANMSK 1148
Query: 802 KRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMN 861
+ E +GM +LR R EK G + + A A Y VT+
Sbjct: 1149 DYKFHEELGMLSLSLRGIYRKKCYEKVGGRSFELLAPLAVAMYRVTHEEMTTALQKYRAE 1208
Query: 862 RDH----------------FLSFPWCVYDRLVEI 879
H F+SFPW + + L ++
Sbjct: 1209 NPHDEKLFHKPTPKIDQLPFISFPWVLQNILGKV 1242
>gi|159127939|gb|EDP53054.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus fumigatus
A1163]
Length = 1423
Score = 444 bits (1142), Expect = e-121, Method: Compositional matrix adjust.
Identities = 282/860 (32%), Positives = 453/860 (52%), Gaps = 62/860 (7%)
Query: 50 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 109
+ LP+ + +++ + + + ++ + F + ++ +EH K +E +
Sbjct: 408 VHLPFPVRYQLEVCLSHNYLSEFTMSREFAVKLLNLGESEAVKLLEHVAIK----EEVYH 463
Query: 110 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 169
+P + ++ K T PS Y+ ++TP+ +Y+ P +++SNRV+R+
Sbjct: 464 DPMKIFDLKFAKGSTRAKIPSY--------CCYMRSARITPTTIYYNTPSVDISNRVIRY 515
Query: 170 FRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKF 229
+ D FLR+ F DE L R +S D T ++TRI L NGI+IGDR++
Sbjct: 516 YIEYADRFLRVRFTDEKLLG--------RINSTIDNTMDEVFTRIKRALANGIVIGDRRY 567
Query: 230 EFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 289
EFLAF +SQ RE A+ FA LTAA IR WMG F +IRNVAK+AARLGQ FS+++
Sbjct: 568 EFLAFGNSQFREHGAYFFAPLPSLTAANIRAWMGTFNDIRNVAKHAARLGQCFSTTRAIA 627
Query: 290 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD---NPPSAFQIRY 346
+ +I +I DV + Y FSDG+G++S A+ AS+ ++ +PPSAFQ R
Sbjct: 628 GCPV-QIRLIDDVV----RNGYTFSDGVGRISKFLAQMAASELKIRTPSGDPPSAFQFRL 682
Query: 347 GGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGI 405
GG KG++ P + ++ + +R S K+ S L+++ WS+Y LNRQLI +LS+LGI
Sbjct: 683 GGCKGMLTVSPEAQRQEVHIRKSQYKFASVHNGLEIIRWSQYSMATLNRQLIIVLSSLGI 742
Query: 406 WDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAEPFLS 464
D +F K R ++ L+ + +A L + + P + T ++ ++++ G++ EPF++
Sbjct: 743 QDSVFHDKLRAMLQSLNESMESDSQALCWLKKYVDPNQMTLVVSQMVLDGFRSSREPFVT 802
Query: 465 MMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG-YRQLHGES 523
+++ ++A L L+ K +I I G +++GC+DET L ++ GA +L
Sbjct: 803 SIMRLWKAWHLKYLKEKAKIVIEKGANLLGCMDETGILRGYSEWIPAKGASDEEKLAALP 862
Query: 524 SLFSSSR---SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 580
+F + + +++G+ ++A+NP LHPGD+RV++AVNVP L H+ D VVFPQ G R
Sbjct: 863 EIFVQIHHPDTGKCEVIEGVCILARNPSLHPGDIRVVRAVNVPQLSHLKDVVVFPQTGDR 922
Query: 581 PHPNECSGSDLDGDIYFVCWDDELIPPQQ-DPPMDYTPAQSMQLDHDVQIEDVEEYFTNY 639
P+ CSG DLDGD Y V WD +L+P PM YT ++ LD DV + + +F Y
Sbjct: 923 DIPSTCSGGDLDGDDYLVIWDQDLVPEDWFRKPMKYTSDKAQDLDQDVTVNHITSFFVLY 982
Query: 640 IVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEY 699
+ ND L IA+AH +ADR E C++LA+ S AVD+ KTG PA + L K +
Sbjct: 983 MKNDFLPRIAHAHLAWADRLEDGVNEEKCIRLAQLHSDAVDYNKTGKPANMARSLQPKVW 1042
Query: 700 PDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFE 756
P FMEK KP Y+S ++G+L+ AV+ I S F + + S ++ F
Sbjct: 1043 PHFMEKKHKPKEMIYKSNKILGQLYDAVERIDFVPSLEMPFDERILTCSLGVSDDLVQFA 1102
Query: 757 DHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRAL 816
+ K +YD + +M + I TE E+ + ++ S + E +G+ +L
Sbjct: 1103 RDL------KADYDAAMHRIMAQHEITTEFEVWSTFVLSHSNMSKDYKFHEELGLISSSL 1156
Query: 817 RKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDH------------ 864
R R EK G + + A A Y VT H + + + +H
Sbjct: 1157 RDMYRKKCYEKVGGRSFELLAPLAVAMYRVT-HEEMTSALEKCRSENHSDGQLFHKPTPK 1215
Query: 865 -----FLSFPWCVYDRLVEI 879
F+SFPW +Y+ L +I
Sbjct: 1216 IDQLPFISFPWILYNILGKI 1235
>gi|258573507|ref|XP_002540935.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901201|gb|EEP75602.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 1521
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 297/882 (33%), Positives = 456/882 (51%), Gaps = 99/882 (11%)
Query: 48 DGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH-ALDKLYHLKE 106
D I LPY + +++ + + +G ++ + +F + + +EH A +KL +
Sbjct: 488 DYIPLPYSVRYQLEVCLSHGLLSEYTIGKDFTTTLAALGETNARELLEHVAGEKLVY--- 544
Query: 107 CCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRV 166
Y+P + + K TSR P Y+ +VTPS VYF P +++SNRV
Sbjct: 545 --YDPMKIFDILFVKPATSRRIPKY--------CCYMRTARVTPSTVYFNTPSVDISNRV 594
Query: 167 LRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGD 226
+RH+ D FLR+ F DE + R S + + T ++TRI + NGI +GD
Sbjct: 595 IRHYIEYADRFLRVRFTDERFEG--------RISPSHNNTMDEVFTRIKRAMMNGITLGD 646
Query: 227 RKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSK 286
R +EFLAF +SQ RE A+ FAS LTA+ IR WMG+F +I+ +A++AARLGQ FS+++
Sbjct: 647 RHYEFLAFGNSQFREHGAYFFASLPHLTASNIRAWMGHFSDIKEIARHAARLGQCFSTTR 706
Query: 287 ETLS--VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFAR------KVASKCGLKDNP 338
V + EIE +I + + FSDG+G++S A+ K+ + CG P
Sbjct: 707 AVTGCPVQIREIE-------DIERNGHTFSDGVGRISRFLAQMIMTEFKIKTPCG---EP 756
Query: 339 PSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLI 397
PS FQ R GG KG++ P + ++ + +R S K+ + L+V+ S + LNRQLI
Sbjct: 757 PSVFQFRLGGCKGILTVSPEAQRREVHIRKSQYKFPAIHNGLEVIRHSHFSMASLNRQLI 816
Query: 398 SLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYK 456
+LS L + DEIF +K R + L+ ++ +A L + + P + T +L E++ G++
Sbjct: 817 VVLSALEVPDEIFIEKLRVMLENLELAMSSEAQAIHLLHKYVDPNQMTLVLAEMVQDGFQ 876
Query: 457 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL-NYGQVFVQISGAG 515
EPF++ +L+ +RA ++ L+ K +I I +G + GCLDET TL + + + A
Sbjct: 877 ASKEPFVTSLLELWRAWQIKYLKEKAKIIIEDGACLFGCLDETGTLKGFFNDKIPAANAS 936
Query: 516 YRQ-LHGESSLF---SSSRSRQRF-IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD 570
Y + L +F S + + ++ +++G +VA+NP LHPGD+RV+KAVNVPALHH+ D
Sbjct: 937 YEEKLESLPEVFVQISRADNGGKYEVIEGPCIVARNPSLHPGDIRVVKAVNVPALHHLKD 996
Query: 571 CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ-DPPMDYTPAQSMQ-LDHDVQ 628
VVFPQ G + P+ CSG DLDGD Y + WD +L+P PMDY P+ L DV
Sbjct: 997 VVVFPQTGDKDVPSMCSGGDLDGDDYLIIWDQDLLPKNWFRQPMDYVPSTKAHCLSRDVT 1056
Query: 629 IEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPA 688
+ D+ +F Y+ ND L IA AH +AD R C+QLAE S AVD+ KTG+PA
Sbjct: 1057 VNDITSFFVTYMKNDRLPQIALAHLAWADYLERGVNDPKCMQLAELHSAAVDYNKTGIPA 1116
Query: 689 EIPPHLYVKEYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRS 745
++ L +++P FMEK KP Y SQ ++G+L+ + R
Sbjct: 1117 KMTKDLIPRKWPHFMEKKHKPKEAQYISQKILGQLY-----------------DRLERVD 1159
Query: 746 YDPDMEVDGFEDHI--------DD----AIYHKGNYDYKLGNLMDYYGIKTEAEILTGSI 793
Y P +E D F++ I DD A K YD + +M + I TE E+ + +
Sbjct: 1160 YRPKLEAD-FDERILSSGIETSDDLLAMATELKTLYDADMRRIMAQHEINTEFEVWSTFV 1218
Query: 794 MKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVT------ 847
+ + + E IG ALR+ R EK+G + A A Y VT
Sbjct: 1219 LSHANMSKDYKFHEEIGQIASALRERFRVLCFEKAGGKDFEHLAPLAVAMYKVTCNEMTQ 1278
Query: 848 -------YHPDYWGCYNQGMNRDH---FLSFPWCVYDRLVEI 879
+ D G + + + F+SFPW + L +I
Sbjct: 1279 ALAASKARYSDETGIQSVSIKHEEKLPFISFPWVLQPVLGKI 1320
>gi|326471540|gb|EGD95549.1| RNA-directed RNA polymerase [Trichophyton tonsurans CBS 112818]
Length = 1605
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 266/829 (32%), Positives = 436/829 (52%), Gaps = 80/829 (9%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 111
+ Y + +++ + + +G ++ +D +F + ++ +E+ + K +P
Sbjct: 537 ISYAVRYQLEVCISHGFLSEYTIDKDFAKKLESLGERDGKDLLEYVAQE----KTVYLDP 592
Query: 112 SRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFR 171
Q+ +T+R P Y+ VTPS +YF P ++ SNRV+RH+
Sbjct: 593 MEIFNIQFFSGVTNRRIPKY--------CCYMRSATVTPSTIYFNTPTVDTSNRVIRHYI 644
Query: 172 RDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEF 231
D FLR+ F DE + R +S + ++TR+ T+ NGI +GDR +EF
Sbjct: 645 EYADKFLRVRFTDEKYEG--------RINSTYNNCMDEVFTRVKRTMTNGITVGDRHYEF 696
Query: 232 LAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLS- 290
LAF +SQ RE A+ FAS LTAA IR WMG+F +I+ VAK+AARLG+ FS+++
Sbjct: 697 LAFGNSQFREHGAYFFASLPNLTAANIRAWMGHFSDIKIVAKHAARLGRCFSTTRAVTGC 756
Query: 291 -VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIRY 346
V + EI+ E+ + Y+FSDG+G++S A+ + ++ L+ + PPS FQ R
Sbjct: 757 PVTVREID-------EVERNGYIFSDGVGRISKFLAQMIMTEFKLQTPSEEPPSVFQFRL 809
Query: 347 GGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGI 405
GG KG++ P + ++ + +R S K+ + L+++ WS++ LNRQLI +LS LG+
Sbjct: 810 GGCKGILTVSPEAQRREVHIRKSQYKFAAIHNGLEIIRWSQFAAAHLNRQLIVVLSALGV 869
Query: 406 WDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYKPDAEPFLS 464
DEIF +K R + ++ +T KA L+ + P + T IL +++ G++ +PF+
Sbjct: 870 SDEIFIQKLRLMLEDMEQAMTSETKAMSMLQKRVDPNQMTLILAQMVHDGFQGSCDPFVK 929
Query: 465 MMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN--------------------Y 504
+L+ +RA ++ L+ K ++FI G + GCLDET TL
Sbjct: 930 SLLELWRAWQIKYLKEKAKVFIDQGACLFGCLDETATLKGYHEKKRPSIEATYEERLEYL 989
Query: 505 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 564
++FVQ+ F + ++ +++G ++A+NP LHPGD+RV++AV+VPA
Sbjct: 990 PEIFVQV--------------FDNEEEKKYRVIEGPCILARNPSLHPGDIRVVRAVDVPA 1035
Query: 565 LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD---PPMDYTPAQSM 621
LHH+ D +VFPQ G R P+ CSG DLDGD Y V WD +L+P +D PMDYT + +
Sbjct: 1036 LHHLKDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVPLPKDWFREPMDYTASNAQ 1095
Query: 622 QLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDF 681
L DV + D+ +F Y+ ND L IA+AH FAD E C+QLA+ S AVD+
Sbjct: 1096 SLTRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADYLEDGVNDERCIQLAQLHSAAVDY 1155
Query: 682 PKTGVPAEIPPHLYVKEYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIRLFT 738
K+G+PA + L +++P FMEK KP Y+S+ ++G+++ V+ + F
Sbjct: 1156 NKSGIPANMTRDLVPRKWPHFMEKKYKPKEAQYQSKKILGQIYDIVERVEFRPKLEAPFD 1215
Query: 739 KEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSK 798
+ + + ++ ED + A K YD + +M + IKTE E+ + ++ +
Sbjct: 1216 ERIL------NCDISVSEDMVLAAKKLKALYDADMRRIMAQHEIKTEFEVWSTFVLGHAN 1269
Query: 799 SFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVT 847
+ E +G ALR + ++++G A A Y VT
Sbjct: 1270 MSKDYKFHEELGQISSALRDRFLSMCQDEAGGRDFQHLAPLAVAMYRVT 1318
>gi|327305981|ref|XP_003237682.1| RNA-directed RNA polymerase [Trichophyton rubrum CBS 118892]
gi|326460680|gb|EGD86133.1| RNA-directed RNA polymerase [Trichophyton rubrum CBS 118892]
Length = 1604
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 263/813 (32%), Positives = 434/813 (53%), Gaps = 48/813 (5%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 111
+ Y + +++ + + +G ++ +D +F + ++ +E+ + K ++P
Sbjct: 536 ISYAVRYQLEVCISHGFLSEYTIDKDFAKKLESLGERDGKDLLEYVAQE----KTVYHDP 591
Query: 112 SRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFR 171
Q+ +T+R P Y+ VTPS +YF P ++ SNRV+RH+
Sbjct: 592 MEIFNIQFFSGVTNRRIPKY--------CCYMRSATVTPSTIYFNTPTVDTSNRVIRHYI 643
Query: 172 RDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEF 231
D FLR+ F DE + R +S + ++TR+ T+ NGI +GDR +EF
Sbjct: 644 EYADRFLRVRFTDEKYEG--------RINSTYNNCMDEVFTRVKRTMTNGITVGDRHYEF 695
Query: 232 LAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSV 291
LAF +SQ RE A+ FAS LTAA IR WMG+F +I+ VAK+AARLGQ FS+++
Sbjct: 696 LAFGNSQFREHGAYFFASLPNLTAANIRAWMGHFSDIKIVAKHAARLGQCFSTTRAVTGC 755
Query: 292 HMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIRYGG 348
+ I E+ + Y+FSDG+G++S A+ + ++ L+ + PPS FQ R GG
Sbjct: 756 PVTVRTID-----EVERNGYIFSDGVGRISKFLAQMIMTEFKLQTPSEEPPSVFQFRLGG 810
Query: 349 YKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWD 407
KG++ P + ++ + +R S K+ + L+++ WS++ LNRQLI +LS LG+ D
Sbjct: 811 CKGILTVSPEAQRREVHIRKSQYKFAAIHNGLEIIRWSQFAAAHLNRQLIVVLSALGVSD 870
Query: 408 EIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYKPDAEPFLSMM 466
EIF +K R + ++ +T KA L+ + P + T + +++ G++ +PF+ +
Sbjct: 871 EIFIQKLRLMLEDMEQAMTSETKAMSMLQKRVDPNQMTLLPAQMVHDGFQGSCDPFVKSL 930
Query: 467 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN--YGQVFVQISGAGYRQLHGESS 524
L+ +RA ++ L+ K ++FI G + GCLDET TL Y + I +L
Sbjct: 931 LELWRAWQIKYLKEKAKVFIDQGACLFGCLDETATLKGYYEKKRPSIEATYEERLEYLPE 990
Query: 525 LF----SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 580
+F + ++ +++G ++A+NP LHPGD+RV++AVNVPALHH+ D +VFPQ G R
Sbjct: 991 IFVQVFDNEEEKKYRVIEGPCILARNPSLHPGDIRVVRAVNVPALHHLKDVIVFPQTGDR 1050
Query: 581 PHPNECSGSDLDGDIYFVCWDDELIPPQQD---PPMDYTPAQSMQLDHDVQIEDVEEYFT 637
P+ CSG DLDGD Y V WD +L+P +D PMDYT + + L+ DV + D+ +F
Sbjct: 1051 DVPSTCSGGDLDGDDYIVIWDQDLVPLPKDWFREPMDYTASNAQSLNRDVTVNDITSFFV 1110
Query: 638 NYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVK 697
Y+ ND L IA+AH FAD E C+QLA+ S AVD+ K+G+PA + L +
Sbjct: 1111 TYMKNDRLPQIAHAHLAFADYLEDGVNDERCIQLAQLHSAAVDYNKSGIPANMTRDLVPR 1170
Query: 698 EYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDG 754
+P FMEK KP Y+S+ ++G+++ V+ + F + + + ++
Sbjct: 1171 RWPHFMEKKYKPKEAQYQSKKILGQIYDIVERVEFRPKLEAPFDERIL------NCDISV 1224
Query: 755 FEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVR 814
+D + A K YD + +M + IKTE E+ + ++ + + E +G
Sbjct: 1225 SQDMVLAAKKLKALYDADMRRIMAQHEIKTEFEVWSTFVLGHANMSKDYKFHEELGQISS 1284
Query: 815 ALRKEARAWFKEKSGSDTEDDAYAKASAWYHVT 847
ALR+ + ++++G A A Y VT
Sbjct: 1285 ALRERFLSMCQDEAGGRDFQHLAPLAVAMYRVT 1317
>gi|392864142|gb|EAS35051.2| RNA-directed RNA polymerase [Coccidioides immitis RS]
Length = 1403
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 280/832 (33%), Positives = 434/832 (52%), Gaps = 79/832 (9%)
Query: 48 DGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKEC 107
D LP+ + +++ + + +G + + F + + +EH + K
Sbjct: 367 DYTPLPFSVRYQLEVCLSHGLLNEYTIGKEFVAALVALGETKARELLEHVASE----KHV 422
Query: 108 CYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVL 167
Y+P + + K TSR P Y+ +VTPS VYF P ++++NRV+
Sbjct: 423 YYDPKKIFDILFVKPATSRRIPKY--------CCYMRTARVTPSTVYFGTPSVDITNRVI 474
Query: 168 RHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDR 227
RH+ D FLR+ F DE + R + + T ++TR+ T+ NGI +GDR
Sbjct: 475 RHYIEYADRFLRVRFTDEKFEG--------RIQPSHNNTMDEVFTRVKRTMMNGITLGDR 526
Query: 228 KFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKE 287
+EFLAF +SQ RE A+ FAS LTAA IR WMG+F +I+ +A++AARLGQ FS+++
Sbjct: 527 HYEFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARLGQCFSTTRA 586
Query: 288 TLS--VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD---NPPSAF 342
V + EIE +I + Y FSDG+G++S A+ V ++ +K PPS F
Sbjct: 587 VTGCPVQIREIE-------DIQRNGYTFSDGVGRISRFLAQMVMTEFKIKTPCGEPPSVF 639
Query: 343 QIRYGGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLS 401
Q R GG KG++ P + ++ + +R S K+ + L+V+ S + LNRQLI +LS
Sbjct: 640 QFRLGGCKGILTVSPEAQRQQVHIRKSQYKFPAIHNGLEVIRHSHFCMASLNRQLIVVLS 699
Query: 402 TLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAE 460
+L + DE+F +K R + L+ +T +A L + + P + T +L E++ G++ E
Sbjct: 700 SLEVPDEVFLEKLRMMLGNLELAMTSETQAIHLLHKYIDPNQMTLVLAEMIQDGFQSSKE 759
Query: 461 PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN----------------- 503
PF++ +L+ +RA ++ L+ K +I I G + GCLDET TL
Sbjct: 760 PFVTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKGLFHDNIPSKDASYEER 819
Query: 504 ---YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAV 560
++FVQIS A + + I++G ++A+NP LHPGD+RV+KAV
Sbjct: 820 LACLPEIFVQISRA--------------NNDGKYEIIEGPCIIARNPSLHPGDIRVVKAV 865
Query: 561 NVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ-DPPMDYTPA- 618
N PALHH+ D +VFPQ G R P+ CSG DLDGD Y V WD +L+P PM+Y P+
Sbjct: 866 NAPALHHLRDVIVFPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLLPKDWFKQPMNYAPSV 925
Query: 619 QSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIA 678
++++L DV + D+ +F Y+ ND L IA++H +AD + C++LAE S A
Sbjct: 926 KALRLSRDVTVNDITSFFVTYMKNDRLAQIAHSHLAWADYLEKGVNDSKCIRLAELHSAA 985
Query: 679 VDFPKTGVPAEIPPHLYVKEYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIR 735
VD+ KTG+PA++ L +++P FMEK KP Y SQ ++GKL+ DI +
Sbjct: 986 VDYNKTGIPAKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILGKLY----DIVERVNYRP 1041
Query: 736 LFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMK 795
R + +EV+ +D + A K YD + +M + IKTE E+ + ++
Sbjct: 1042 KLEAPFDDRILNSGIEVN--DDLLAVAAELKVLYDADMCRIMAQHEIKTEFEVWSTFVLS 1099
Query: 796 MSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVT 847
S + E IG ALR+ R EK+G + A A Y VT
Sbjct: 1100 HSNMSKDYKFHEEIGQISCALRERFRNLCCEKAGGKNFEHLAPLAVAMYKVT 1151
>gi|119192036|ref|XP_001246624.1| hypothetical protein CIMG_00395 [Coccidioides immitis RS]
Length = 1492
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 287/847 (33%), Positives = 437/847 (51%), Gaps = 109/847 (12%)
Query: 48 DGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKEC 107
D LP+ + +++ + + +G + + F + + +EH + K
Sbjct: 456 DYTPLPFSVRYQLEVCLSHGLLNEYTIGKEFVAALVALGETKARELLEHVASE----KHV 511
Query: 108 CYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVL 167
Y+P + + K TSR P Y+ +VTPS VYF P ++++NRV+
Sbjct: 512 YYDPKKIFDILFVKPATSRRIPKY--------CCYMRTARVTPSTVYFGTPSVDITNRVI 563
Query: 168 RHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDR 227
RH+ D FLR+ F DE + R + + T ++TR+ T+ NGI +GDR
Sbjct: 564 RHYIEYADRFLRVRFTDEKFEG--------RIQPSHNNTMDEVFTRVKRTMMNGITLGDR 615
Query: 228 KFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKE 287
+EFLAF +SQ RE A+ FAS LTAA IR WMG+F +I+ +A++AARLGQ FS+++
Sbjct: 616 HYEFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARLGQCFSTTRA 675
Query: 288 TLS--VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFAR------KVASKCGLKDNPP 339
V + EIE +I + Y FSDG+G++S A+ K+ + CG PP
Sbjct: 676 VTGCPVQIREIE-------DIQRNGYTFSDGVGRISRFLAQMVMTEFKIKTPCG---EPP 725
Query: 340 SAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLIS 398
S FQ R GG KG++ P + ++ + +R S K+ + L+V+ S + LNRQLI
Sbjct: 726 SVFQFRLGGCKGILTVSPEAQRQQVHIRKSQYKFPAIHNGLEVIRHSHFCMASLNRQLIV 785
Query: 399 LLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKP 457
+LS+L + DE+F +K R + L+ +T +A L + + P + T +L E++ G++
Sbjct: 786 VLSSLEVPDEVFLEKLRMMLGNLELAMTSETQAIHLLHKYIDPNQMTLVLAEMIQDGFQS 845
Query: 458 DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN-------------- 503
EPF++ +L+ +RA ++ L+ K +I I G + GCLDET TL
Sbjct: 846 SKEPFVTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKGLFHDNIPSKDASY 905
Query: 504 ------YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 557
++FVQIS A + + I++G ++A+NP LHPGD+RV+
Sbjct: 906 EERLACLPEIFVQISRA--------------NNDGKYEIIEGPCIIARNPSLHPGDIRVV 951
Query: 558 KAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ-DPPMDYT 616
KAVN PALHH+ D +VFPQ G R P+ CSG DLDGD Y V WD +L+P PM+Y
Sbjct: 952 KAVNAPALHHLRDVIVFPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLLPKDWFKQPMNYA 1011
Query: 617 PA-QSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKF 675
P+ ++++L DV + D+ +F Y+ ND L IA++H +AD + C++LAE
Sbjct: 1012 PSVKALRLSRDVTVNDITSFFVTYMKNDRLAQIAHSHLAWADYLEKGVNDSKCIRLAELH 1071
Query: 676 SIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTS 732
S AVD+ KTG+PA++ L +++P FMEK KP Y SQ ++GKL+ DI
Sbjct: 1072 SAAVDYNKTGIPAKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILGKLY----DI----- 1122
Query: 733 CIRLFTKEVARRSYDPDMEVDGFEDHI--------DD----AIYHKGNYDYKLGNLMDYY 780
V R +Y P +E F+D I DD A K YD + +M +
Sbjct: 1123 --------VERVNYRPKLEAP-FDDRILNSGIEVNDDLLAVAAELKVLYDADMCRIMAQH 1173
Query: 781 GIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKA 840
IKTE E+ + ++ S + E IG ALR+ R EK+G + A
Sbjct: 1174 EIKTEFEVWSTFVLSHSNMSKDYKFHEEIGQISCALRERFRNLCCEKAGGKNFEHLAPLA 1233
Query: 841 SAWYHVT 847
A Y VT
Sbjct: 1234 VAMYKVT 1240
>gi|414877742|tpg|DAA54873.1| TPA: hypothetical protein ZEAMMB73_768916 [Zea mays]
Length = 937
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 256/623 (41%), Positives = 361/623 (57%), Gaps = 29/623 (4%)
Query: 36 RSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIE 95
R DL V +G+ P +LF +N LV G ++ L F+ L+ V+++ +
Sbjct: 327 RMQDLFFCVQHAEGLKFP--VLFLVNALVHKGVISQHHLTPEFFGLLQRKEDDVNVAALR 384
Query: 96 HALDKLYHLKECCYEPSRWLTDQYRKYMTS-RSKPSSPAISLDDGLVYVHRVQVTPSRVY 154
+ + + C L D+ +Y+ R+K + D V R+ +TP++ Y
Sbjct: 385 EFWGDKFPVFDACGRLKN-LQDRVARYLKHLRNK-------IGDVNSEVRRLVITPTKAY 436
Query: 155 FCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS-------SATDITR 207
PE+ SNRV+RH+ D FLR++F+DE + ++S L+ + S + + +
Sbjct: 437 CMPPEVERSNRVIRHYSEVSDRFLRVTFMDERMQMLNSNVLNFSAAQIVKDLMSNSFLHK 496
Query: 208 TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFRE 267
T +Y R+ + L G + RK+ FLAFSS+QLR+ SAW FA T IR+WMG F
Sbjct: 497 TTVYKRVKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDRTTTVETIRKWMGRFTS 556
Query: 268 IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARK 327
+NVAK+AAR+GQ FSS+ T+ + E+ D E+ Y+FSDGIGK++ + A +
Sbjct: 557 -KNVAKHAARMGQCFSSTYATVVLQPHEVNECLD---EVEHNGYIFSDGIGKITCDLALE 612
Query: 328 VASKCGLKDNPPSAFQIRYGGYKGVVAA--DPTSSKKLSLRDSMRKYESELTKLDVLAWS 385
VA K L DNPPSA+QIRY G+KGV++ +LSLR SM K+ES T L+V++W+
Sbjct: 613 VAQKLQLTDNPPSAYQIRYAGFKGVISVWEGKNDGIRLSLRPSMHKFESNHTVLEVVSWT 672
Query: 386 KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTN 445
K+QP FLNRQ+I+LLS+L + D IF + Q + L+ IL+D A + + S E
Sbjct: 673 KFQPGFLNRQIITLLSSLNVPDAIFAQMQEAMLSNLNNILSDSDVAFDIVT-ASCAEQGT 731
Query: 446 ILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYG 505
+L G P EP L ML R+S+LL L KTRIF+P GR +MGCLDE L G
Sbjct: 732 TAALMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPKGRWLMGCLDELGILEQG 791
Query: 506 QVFVQISGAGYRQ-LHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 564
Q F++ S L S S++ + I+ G +V+AKNPCLHPGDVR+L+AV+VP
Sbjct: 792 QCFIRASSPSLNNCLVKYGSRLSAANTNAETIL-GTIVMAKNPCLHPGDVRILEAVDVPE 850
Query: 565 LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQ 622
LHH+VDC+VFP+KG RPH NE SGSDLDGD+YFV WD+ LIPP + PMDY+PA++ Q
Sbjct: 851 LHHLVDCLVFPKKGERPHANEASGSDLDGDLYFVTWDENLIPPGKKSWNPMDYSPAEAKQ 910
Query: 623 LDHDVQIEDVEEYFTNYIVNDSL 645
L V YIV SL
Sbjct: 911 LPRAVSQHFWTMSLYGYIVFYSL 933
>gi|303313157|ref|XP_003066590.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240106252|gb|EER24445.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 1445
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 280/832 (33%), Positives = 434/832 (52%), Gaps = 79/832 (9%)
Query: 48 DGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKEC 107
D LP+ + +++ + + +G + + F + + +EH + K
Sbjct: 409 DYTPLPFTVRYQLEVCLSHGFLNEYTIGKEFVTALVALGETKARELLEHVASE----KHV 464
Query: 108 CYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVL 167
Y+P + + K TSR P Y+ +VTPS VYF P ++++NRV+
Sbjct: 465 YYDPKKIFDILFVKPATSRRIPKY--------CCYMRTARVTPSTVYFGTPSVDITNRVI 516
Query: 168 RHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDR 227
RH+ D FLR+ F DE + R + + T ++TR+ T+ NGI +GDR
Sbjct: 517 RHYIEYADRFLRVRFTDEKFEG--------RIQPSHNNTMDEVFTRVKRTMMNGITLGDR 568
Query: 228 KFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKE 287
+EFLAF +SQ RE A+ FAS LTAA IR WMG+F +I+ +A++AARLGQ FS+++
Sbjct: 569 HYEFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARLGQCFSTTRA 628
Query: 288 TLS--VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD---NPPSAF 342
V + EIE +I + Y FSDG+G++S A+ V ++ +K PPS F
Sbjct: 629 VTGCPVQIREIE-------DIQRNGYTFSDGVGRISRFLAQMVMTEFKIKTPCGEPPSVF 681
Query: 343 QIRYGGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLS 401
Q R GG KG++ P + ++ + +R S K+ + L+V+ S + LNRQLI +LS
Sbjct: 682 QFRLGGCKGILTVSPEAQRQQVHIRKSQYKFPAIHNGLEVIRHSHFCMASLNRQLIVVLS 741
Query: 402 TLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAE 460
+L + DE+F +K R + L+ +T +A L + + P + T +L E++ G++ E
Sbjct: 742 SLEVPDEVFLEKLRMMLGNLELAMTSETQAIHLLYKYIDPNQMTLVLAEMIQDGFQSSKE 801
Query: 461 PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN----------------- 503
PF++ +L+ +RA ++ L+ K +I I G + GCLDET TL
Sbjct: 802 PFVTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKGFFHDNIPSKDASYEER 861
Query: 504 ---YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAV 560
++FVQIS A + + I++G ++A+NP LHPGD+RV+KAV
Sbjct: 862 LACLPEIFVQISRA--------------NNDGKYEIIEGPCIIARNPSLHPGDIRVVKAV 907
Query: 561 NVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ-DPPMDYTPA- 618
N PALHH+ D +VFPQ G R P+ CSG DLDGD Y V WD +L+P PM+Y P+
Sbjct: 908 NAPALHHLRDVIVFPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLLPKDWFKQPMNYAPSV 967
Query: 619 QSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIA 678
++++L DV + D+ +F Y+ ND L IA++H +AD + C++LAE S A
Sbjct: 968 KALRLSRDVTVNDITSFFVTYMKNDRLAQIAHSHLAWADYLEKGVNDSKCIRLAELHSAA 1027
Query: 679 VDFPKTGVPAEIPPHLYVKEYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIR 735
VD+ KTG+PA++ L +++P FMEK KP Y SQ ++GKL+ DI +
Sbjct: 1028 VDYNKTGIPAKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILGKLY----DIVERVNYRP 1083
Query: 736 LFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMK 795
R + +EV+ +D + A K YD + +M + IKTE E+ + ++
Sbjct: 1084 KLEAPFDDRILNSGIEVN--DDLLAVAAELKVLYDADMCRIMAQHEIKTEFEVWSTFVLS 1141
Query: 796 MSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVT 847
S + E IG ALR+ R EK+G + A A Y VT
Sbjct: 1142 HSNMSKDYKFHEEIGQISCALRERFRNLCCEKAGGKNFEHLAPLAVAMYKVT 1193
>gi|320036523|gb|EFW18462.1| RNA-directed RNA polymerase Rdp1 [Coccidioides posadasii str.
Silveira]
Length = 1444
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 286/847 (33%), Positives = 436/847 (51%), Gaps = 109/847 (12%)
Query: 48 DGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKEC 107
D LP+ + +++ + + +G + + F + + +EH + K
Sbjct: 408 DYTPLPFSVRYQLEVCLSHGFLNEYTIGKEFVTALVALGETKARELLEHVASE----KHV 463
Query: 108 CYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVL 167
Y+P + + K SR P Y+ +VTPS VYF P ++++NRV+
Sbjct: 464 YYDPKKIFDILFVKPAMSRRIPKY--------CCYMRTARVTPSTVYFGTPSVDITNRVI 515
Query: 168 RHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDR 227
RH+ D FLR+ F DE + R + + T ++TR+ T+ NGI +GDR
Sbjct: 516 RHYIEYADRFLRVRFTDEKFEG--------RIQPSHNNTMDEVFTRVKRTMMNGITLGDR 567
Query: 228 KFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKE 287
+EFLAF +SQ RE A+ FAS LTAA IR WMG+F +I+ +A++AARLGQ FS+++
Sbjct: 568 HYEFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARLGQCFSTTRA 627
Query: 288 TLS--VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFAR------KVASKCGLKDNPP 339
V + EIE +I + Y FSDG+G++S A+ K+ + CG PP
Sbjct: 628 VTGCPVQIREIE-------DIQRNGYTFSDGVGRISRFLAQMVMTEFKIKTPCG---EPP 677
Query: 340 SAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLIS 398
S FQ R GG KG++ P + ++ + +R S K+ + L+V+ S + LNRQLI
Sbjct: 678 SVFQFRLGGCKGILTVSPEAQRQQVHIRKSQYKFPAIHNGLEVIRHSHFCMASLNRQLIV 737
Query: 399 LLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKP 457
+LS+L + DE+F +K R + L+ +T +A L + + P + T +L E++ G++
Sbjct: 738 VLSSLEVPDEVFLEKLRMMLGNLELAMTSETQAIHLLHKYIDPNQMTLVLAEMIQDGFQS 797
Query: 458 DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN-------------- 503
EPF++ +L+ +RA ++ L+ K +I I G + GCLDET TL
Sbjct: 798 SKEPFVTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKGFFHDNIPSKDASY 857
Query: 504 ------YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 557
++FVQIS A + + I++G ++A+NP LHPGD+RV+
Sbjct: 858 EERLACLPEIFVQISRA--------------NNDGKYEIIEGPCIIARNPSLHPGDIRVV 903
Query: 558 KAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ-DPPMDYT 616
KAVN PALHH+ D +VFPQ G R P+ CSG DLDGD Y V WD +L+P PM+Y
Sbjct: 904 KAVNAPALHHLRDVIVFPQTGDRDIPSMCSGGDLDGDDYLVIWDQDLLPKDWFKQPMNYA 963
Query: 617 PA-QSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKF 675
P+ ++++L DV + D+ +F Y+ ND L IA++H +AD + C++LAE
Sbjct: 964 PSVKALRLSRDVTVNDITSFFVTYMKNDRLAQIAHSHLAWADYLEKGVNDSKCIRLAELH 1023
Query: 676 SIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTS 732
S AVD+ KTG+PA++ L +++P FMEK KP Y SQ ++GKL+ DI
Sbjct: 1024 SAAVDYNKTGIPAKMTKDLAPRKWPHFMEKKHKPKDAQYISQKILGKLY----DI----- 1074
Query: 733 CIRLFTKEVARRSYDPDMEVDGFEDHI--------DD----AIYHKGNYDYKLGNLMDYY 780
V R +Y P +E F+D I DD A K YD + +M +
Sbjct: 1075 --------VERVNYRPKLEAP-FDDRILNSGIEVNDDLLAVAAELKVLYDADMCRIMAQH 1125
Query: 781 GIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKA 840
IKTE E+ + ++ S + E IG ALR+ R EK+G + A
Sbjct: 1126 EIKTEFEVWSTFVLSHSNMSKDYKFHEEIGQISCALRERFRNLCCEKAGGKNFEHLAPLA 1185
Query: 841 SAWYHVT 847
A Y VT
Sbjct: 1186 VAMYKVT 1192
>gi|212544602|ref|XP_002152455.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces marneffei
ATCC 18224]
gi|210065424|gb|EEA19518.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces marneffei
ATCC 18224]
Length = 1359
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 273/817 (33%), Positives = 435/817 (53%), Gaps = 54/817 (6%)
Query: 50 IALPYEILFKINLLVQNGCVAGPLLDS-NFYRLVDPYRAPVSISCIEHALDKLYHLKECC 108
I LP+ I +++ + + +G ++ F + + +++ +EH K+
Sbjct: 433 IHLPFAIRYQLEVCISHGYISEYTASKPEFVQRLKDMEERKALTLLEHVATD----KKIY 488
Query: 109 YEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLR 168
++ + + K +T R+ PS + + VTPS +Y+ P + ++NRVLR
Sbjct: 489 WDAMKIFDILFPKGVTRRNIPSYCCM--------IRTATVTPSTIYWNTPSMEITNRVLR 540
Query: 169 HFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 228
+ D FLR+ F DE + R +S T I+ RI T+ NGI++GDRK
Sbjct: 541 RYSEHADRFLRVRFKDEKFEG--------RINSTHHDTMDEIFARIKRTMSNGIILGDRK 592
Query: 229 FEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 288
+EFLAF +SQ RE A+ FAS +TAA IR WMG F EIRN+AKYAARLGQ FS+++
Sbjct: 593 YEFLAFGNSQFREHGAYFFASEAHVTAANIRAWMGEFSEIRNIAKYAARLGQCFSTTR-A 651
Query: 289 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIR 345
++ E++ IPDV+ + Y FSDG+G++S A+ + +K PPSA+Q R
Sbjct: 652 INTCTVELKRIPDVE----RGGYTFSDGVGRISRFLAQMTQQELKIKTPDKEPPSAYQFR 707
Query: 346 YGGYKG-VVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLG 404
GG KG +V +D +++ +R S K+ + L+++ WS++ LNRQLI++LS+LG
Sbjct: 708 LGGCKGMLVLSDVPRGREIQIRPSQEKFPANHQGLEIIRWSQFSSATLNRQLIAVLSSLG 767
Query: 405 IWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYKPDAEPFL 463
+ DE+F +K R V L+ D A L+ + P E T +L +++ G+ +PF+
Sbjct: 768 VSDEVFHEKLRRMVSNLEEATRDDRAAMRLLQKYIDPNEMTLVLSKMVSDGFLQSRDPFV 827
Query: 464 SMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGES 523
+ ++ ++A + L+ K +I I +G ++G LDET TL G + ++ L ES
Sbjct: 828 TSIITLWKAWSIKYLKEKAKITIEDGACLLGVLDETATLQ-GFSYEKVKKP---HLSRES 883
Query: 524 SLFS---------SSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVF 574
L + + ++ +++G+ ++A+NP LHPGD+RV++AV+ P L H+ D VV
Sbjct: 884 KLDALPEIFLQVYRADEKKYCVIKGVCILARNPSLHPGDIRVVRAVDRPELAHLKDVVVL 943
Query: 575 PQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ-DPPMDYTPAQSMQLDHDVQIEDVE 633
PQ G R + CSG DLDGD Y V WD +L+P Q PMDY P + + LD V + D+
Sbjct: 944 PQLGDRDIASMCSGGDLDGDDYLVIWDKDLVPNQWFRAPMDYAPIKGVNLDRSVTVNDIT 1003
Query: 634 EYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPH 693
+F NY+ NDSL IA+AH ++D S C++LA+ S AVD+ KTG PA +P
Sbjct: 1004 TFFVNYMKNDSLPRIAHAHLAWSDFLMNGVESPKCIRLAQLHSNAVDYNKTGEPAYLPRD 1063
Query: 694 LYVKEYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDM 750
L + +P FMEK KP TY+S+ ++G+L+ AV + H F K V
Sbjct: 1064 LRPRRWPHFMEKNYKPKDQTYQSKKILGQLYDAVDRVDFHPDFDVPFDKRVLESGVSVTD 1123
Query: 751 EVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIG 810
+ F + K +YD L +M + I+TE E+ + ++ + + E +G
Sbjct: 1124 NIMQFAREL------KVDYDLALKRIMAQHEIRTEFEVWSTFVLSHANLSKDYKFHEELG 1177
Query: 811 MAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVT 847
+AL++ + +K G + A A Y VT
Sbjct: 1178 GITKALKERFQKECYDKVGGRDFNHIKPMAVAIYSVT 1214
>gi|296804254|ref|XP_002842979.1| RNA-directed RNA polymerase Rdp1 [Arthroderma otae CBS 113480]
gi|238845581|gb|EEQ35243.1| RNA-directed RNA polymerase Rdp1 [Arthroderma otae CBS 113480]
Length = 1473
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 271/829 (32%), Positives = 425/829 (51%), Gaps = 80/829 (9%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 111
+ Y + +++ + + +G ++ + F + + +EH + K ++P
Sbjct: 405 ISYTVRYQLEVCISHGLLSEYTITKEFAERLQSLGEDDARDLLEHVSRE----KAVYHDP 460
Query: 112 SRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFR 171
+ ++ +T R P + Y+ VTPS +YF P ++ SNRVLR++
Sbjct: 461 MKIFDIEFFSGVTGRKIPKN--------CCYMRSATVTPSTIYFHTPTVDTSNRVLRYYI 512
Query: 172 RDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEF 231
D FLR+ F DE + R +S+ + ++TR+ T+ NGI +GDR +EF
Sbjct: 513 EHADRFLRVRFADEKYEG--------RINSSYNNCMDELFTRVKRTMTNGITVGDRHYEF 564
Query: 232 LAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLS- 290
LAF +SQ RE A+ FAS LTAA IR WMG+F +I+ VAK+AARLGQ FS++K
Sbjct: 565 LAFGNSQFREHGAYFFASLPTLTAANIRAWMGHFSDIKIVAKHAARLGQCFSATKAVTGC 624
Query: 291 -VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIRY 346
V + EI+ EI + Y+FSDG+G++S A+ + ++ ++ D PPS FQ R
Sbjct: 625 PVIVQEID-------EIERNGYIFSDGVGRISNFLAQMIRTELNIQTPSDEPPSVFQFRL 677
Query: 347 GGYKGVVAADPTSS-KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGI 405
GG KG++ P + +++ +R S K+ + L+V+ SK+ LNRQLI +LS LG+
Sbjct: 678 GGCKGILTVSPEAQHREVHIRKSQYKFAAVHNGLEVIRHSKFAGAHLNRQLIMVLSALGV 737
Query: 406 WDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYKPDAEPFLS 464
DEIF KK + + +T+ KA L+ + P + T +L ++ G++ EPF+
Sbjct: 738 TDEIFLKKLHLVLEDMQDAMTNESKAITLLQKRVDPNQMTFLLAHMVNDGFQASCEPFVK 797
Query: 465 MMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL--------------------NY 504
+L+ +RA + L+ K +I I G ++GC+DET TL N
Sbjct: 798 SLLELWRAWDIKYLKEKAKIHIEKGACLLGCIDETATLKGYYEKERPASDATIEERLDNL 857
Query: 505 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 564
++FVQ+ F + + I++G ++A+NP LHPGD+RV++AVNVPA
Sbjct: 858 PEIFVQV--------------FDTEEETKYKIIEGPCILARNPSLHPGDIRVVRAVNVPA 903
Query: 565 LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD---PPMDYTPAQSM 621
LHH+ D +VFPQ G R + CSG DLDGD Y V WD +LIP +D PMDYT + +
Sbjct: 904 LHHLKDVIVFPQTGDRDVSSTCSGGDLDGDDYIVIWDPDLIPLPKDWFCEPMDYTASNAQ 963
Query: 622 QLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDF 681
L DV + D+ +F Y+ ND L IA++H FAD E C+QLA+ S AVD+
Sbjct: 964 SLTRDVTVNDITSFFVTYMKNDHLPQIAHSHLAFADYVEDGVNDERCMQLAQLHSAAVDY 1023
Query: 682 PKTGVPAEIPPHLYVKEYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIRLFT 738
KTG+PA + L +++P FMEK KP Y S+ ++G+++ V+ + F
Sbjct: 1024 NKTGIPANMSRDLIPRKWPHFMEKNHKPKEAQYYSRKILGQIYDIVERVEFRPKLEAPFD 1083
Query: 739 KEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSK 798
K + + + +D I A K YD + +M + +KTE E+ + + +
Sbjct: 1084 KRIL------NSHIPVSDDLIQIAKKMKVLYDADMRRIMAQHEVKTEFEVWSTFALGHAN 1137
Query: 799 SFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVT 847
R E +G LR +++G A A Y VT
Sbjct: 1138 MTKDYRFHEELGQISSGLRNRFLMMCHDEAGGHDFQHLAPLAIAMYRVT 1186
>gi|145245289|ref|XP_001394912.1| RNA-directed RNA polymerase (Sad-1) [Aspergillus niger CBS 513.88]
gi|134079610|emb|CAK40827.1| unnamed protein product [Aspergillus niger]
Length = 1382
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 270/762 (35%), Positives = 416/762 (54%), Gaps = 54/762 (7%)
Query: 142 YVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSS 201
++ +TPS VY+ P +++SNR++R + D FLR+ F DE L R ++
Sbjct: 464 HMRSATITPSTVYYNLPSVDISNRIIRRYMEHADRFLRVRFTDEKL--------YGRINA 515
Query: 202 ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 261
+D + I+TRI L NGI+IGDR++EFLAF +SQ RE A+ FA LTAA IR W
Sbjct: 516 RSDNSNDEIFTRIKRALANGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPDLTAANIRAW 575
Query: 262 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 321
MG+F +IRNVAKYAARLGQ FS+++ + +I IPDV+ + Y FSDG+GK+S
Sbjct: 576 MGHFSDIRNVAKYAARLGQCFSTTRAVAGCPV-QIRNIPDVE----RNGYTFSDGVGKIS 630
Query: 322 AEFARKVASKCGLKD---NPPSAFQIRYGGYKGVVAADPTSS-KKLSLRDSMRKYESELT 377
A+ ++ +K PPSAFQ R GG KG++A + +++ +R+S K+ +
Sbjct: 631 RFLAQMAMTELKIKTPTGEPPSAFQFRLGGCKGMLAVSSDAQPQEIHIRESQNKFPTVHN 690
Query: 378 KLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-E 436
LD++ WS++ LNRQLI ++STLG+ DE+F K + +R LD + +A E L +
Sbjct: 691 GLDIIRWSQFSMATLNRQLILVMSTLGVPDEVFHAKLKSMLRALDEAMESDSRAIEVLKK 750
Query: 437 LMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL 496
+ P + T + +++ G++ EPFL+ +L +R + L+ K +I I G +++G +
Sbjct: 751 YVDPNQTTLTVSQMVSDGFRRSKEPFLTSILALWRTWHIKYLKEKAKIVIDKGTNLLGVM 810
Query: 497 DETRTLNYGQVFVQI---SGAGYRQLHGESSLF-------SSSRSRQRFIVQGLVVVAKN 546
DET L G + +I + ++L +F +S +++GL ++A+N
Sbjct: 811 DETGILK-GYFYDKIPKKDASLEQKLAALPEIFLQIPRSEASEDGATYEVIEGLCILARN 869
Query: 547 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIP 606
P LHPGD+RV++AVNVP LH + D VV PQ G R + CSG DLDGD Y + WD +LI
Sbjct: 870 PSLHPGDIRVVRAVNVPELHSLRDVVVLPQTGDRDIASMCSGGDLDGDDYLIIWDQDLI- 928
Query: 607 PQQD---PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
+D PM YT ++ LDHDV +++V +F Y+ NDSL IA+AH +AD+
Sbjct: 929 -HKDWFLDPMRYTSNKAQDLDHDVTVDEVTSFFVMYMKNDSLPTIAHAHVAWADQLEDGV 987
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKP---TYESQNVIGKL 720
E C++LA+ S AVD+ KTG PA + +L + +P FMEKP KP Y S+ ++G+L
Sbjct: 988 NEEKCIRLAQLHSDAVDYNKTGRPAIMTRNLQPRRWPHFMEKP-KPKDLIYHSEKILGQL 1046
Query: 721 FRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYY 780
+ AV+ + S F + + S + + ++ F ++ K +D + +M +
Sbjct: 1047 YDAVERVDFVPSLEMPFDERILNCSIEVNEDLYTFAKNL------KVEHDTAIRRIMAQH 1100
Query: 781 GIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKA 840
IKTE EI + I+ S+ + E IG A R+ R K T + A
Sbjct: 1101 EIKTEFEIWSTFILNHSQMSKDYKFHEEIGAISAAHRETFRKQCYNKVEGRTFELLAPLA 1160
Query: 841 SAWYHVTYHPDYWGCYNQ----------GMNRDHFLSFPWCV 872
A Y VT+ +N+ +SFPW +
Sbjct: 1161 VAMYRVTHEEMTQALRKHREKSPQHGTPKINQLPLISFPWIL 1202
>gi|389646751|ref|XP_003721007.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae 70-15]
gi|351638399|gb|EHA46264.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae 70-15]
Length = 1407
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 286/871 (32%), Positives = 448/871 (51%), Gaps = 52/871 (5%)
Query: 50 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 109
+ L +E+ +++ + + +A P + F + R + +E+ +D+ L Y
Sbjct: 371 VQLTWEVRYQLEACISHRMLAEPNITLEFLEKLSEMRPTKARIMLEYVVDRNVKL----Y 426
Query: 110 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 169
P + D+ S P L +V VTPS +Y P + +NRVLRH
Sbjct: 427 NPMQLFKDE----GASTYWPDITPEELPQYCTMTRKVTVTPSTMYLSSPMVETTNRVLRH 482
Query: 170 FRRDIDNFLRISFIDE-DLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 228
+ D FLR+ F DE ++H+ P A D I++R+ L+NGI IGDR
Sbjct: 483 YNEHKDRFLRVQFTDELPTGRLHA----PNDLGADD----EIFSRVYRVLKNGIHIGDRH 534
Query: 229 FEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 288
++FLAF SSQ+RE+S + F +T IR WMG F IRNV KYAARLGQ FS+++
Sbjct: 535 YKFLAFGSSQMRENSTYFFCDAGDVTCDSIRAWMGRFSHIRNVGKYAARLGQCFSTTRSI 594
Query: 289 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGG 348
V M I+ IPD++ K Y F+DG+GK+S+ +A ++ L D PSAFQ R GG
Sbjct: 595 DRVAMPWIKTIPDIE----KNGYCFTDGVGKISSLWAVVISENLKL-DYIPSAFQFRMGG 649
Query: 349 YKGV-VAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWD 407
KGV V + +++ +R S K+E++ ++L+V+ S + LNRQ IS+L++LG+ +
Sbjct: 650 CKGVLVVWEDVKGQEIHIRPSQLKFETDHSRLEVIRCSHFSVASLNRQTISVLTSLGVKN 709
Query: 408 EIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAEPFLSMM 466
E+FE E + + + + D A L + + + TN L L+ G+ EPF+ M
Sbjct: 710 EVFESMLAEQLAKYNRAMEDATAAMTLLTQYVDENQMTNTLARLVKAGFMESHEPFVCTM 769
Query: 467 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSL- 525
L+ +R + L+ K R+ + G ++GC+DET+TL+ + S +L+G L
Sbjct: 770 LRLWRTWSVKTLKEKARLVVEKGAFVLGCVDETKTLHGHFTHIPASPNQRPRLNGNMKLP 829
Query: 526 -----FSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 580
SR ++ GL +V +NP LHPGD+RV++A++VP L H+ D VVF Q G R
Sbjct: 830 EIFLQVPDGPSRDYKVITGLCLVGRNPSLHPGDIRVVQAIDVPQLRHIRDVVVFAQTGDR 889
Query: 581 PHPNECSGSDLDGDIYFVCWDDELIP-PQQD--PPMDYTPAQSMQLDHDVQIEDVEEYFT 637
P CSG DLDGD +FV WD+ L+P P Q P Y P + +LD +V +D+ ++F
Sbjct: 890 DIPGMCSGGDLDGDDFFVLWDERLLPLPSQRNYKPASYHPPPARELDREVTADDLCQFFV 949
Query: 638 NYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVK 697
Y+ N SL IA+AH AD+ A+ E CL+LA S+AVD+PKTGVPA I P L
Sbjct: 950 TYMKNFSLPRIAHAHLAQADK--YGAKDEKCLELAYLHSLAVDYPKTGVPAAIRPRLMPN 1007
Query: 698 EYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFED 757
E+P FMEK + Y S+ ++GKL+ VK + H + F ++ + D
Sbjct: 1008 EFPHFMEKA-RGRYHSRKILGKLYDQVKPVNFHPAYEMPFDVKILSLYGELSQHGDLGPK 1066
Query: 758 HIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRAL- 816
+ +A K YD + +M + I TE E+ + ++ + ++ + E +G L
Sbjct: 1067 LLREARKLKTLYDQSIMRIMGQHEIATEFEVFSAFVLSSRRVGSQYKLGEIVGQQSATLK 1126
Query: 817 ---RKEARAWFKEKSGSD----TEDDAYAK-ASAWYHVT---YHPDYWGCYNQGMNRD-- 863
R++ A + SG + +A+ A Y VT C +G+ +
Sbjct: 1127 TVFREKCIAALETVSGRTGIKPRDIEAFGPFVVAMYKVTDEEIKIALHECKTRGVKANPK 1186
Query: 864 --HFLSFPWCVYDRLVEIKKDKTSIGNAFPA 892
++FPW LV++ K+++ P+
Sbjct: 1187 SMPLITFPWIFDQILVQLVTGKSNLPCLTPS 1217
>gi|440466934|gb|ELQ36175.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae Y34]
gi|440478755|gb|ELQ59556.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae P131]
Length = 1977
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 286/871 (32%), Positives = 448/871 (51%), Gaps = 52/871 (5%)
Query: 50 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 109
+ L +E+ +++ + + +A P + F + R + +E+ +D+ L Y
Sbjct: 941 VQLTWEVRYQLEACISHRMLAEPNITLEFLEKLSEMRPTKARIMLEYVVDRNVKL----Y 996
Query: 110 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 169
P + D+ S P L +V VTPS +Y P + +NRVLRH
Sbjct: 997 NPMQLFKDEG----ASTYWPDITPEELPQYCTMTRKVTVTPSTMYLSSPMVETTNRVLRH 1052
Query: 170 FRRDIDNFLRISFIDE-DLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 228
+ D FLR+ F DE ++H+ P A D I++R+ L+NGI IGDR
Sbjct: 1053 YNEHKDRFLRVQFTDELPTGRLHA----PNDLGADD----EIFSRVYRVLKNGIHIGDRH 1104
Query: 229 FEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 288
++FLAF SSQ+RE+S + F +T IR WMG F IRNV KYAARLGQ FS+++
Sbjct: 1105 YKFLAFGSSQMRENSTYFFCDAGDVTCDSIRAWMGRFSHIRNVGKYAARLGQCFSTTRSI 1164
Query: 289 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGG 348
V M I+ IPD++ K Y F+DG+GK+S+ +A ++ L D PSAFQ R GG
Sbjct: 1165 DRVAMPWIKTIPDIE----KNGYCFTDGVGKISSLWAVVISENLKL-DYIPSAFQFRMGG 1219
Query: 349 YKGV-VAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWD 407
KGV V + +++ +R S K+E++ ++L+V+ S + LNRQ IS+L++LG+ +
Sbjct: 1220 CKGVLVVWEDVKGQEIHIRPSQLKFETDHSRLEVIRCSHFSVASLNRQTISVLTSLGVKN 1279
Query: 408 EIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAEPFLSMM 466
E+FE E + + + + D A L + + + TN L L+ G+ EPF+ M
Sbjct: 1280 EVFESMLAEQLAKYNRAMEDATAAMTLLTQYVDENQMTNTLARLVKAGFMESHEPFVCTM 1339
Query: 467 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSL- 525
L+ +R + L+ K R+ + G ++GC+DET+TL+ + S +L+G L
Sbjct: 1340 LRLWRTWSVKTLKEKARLVVEKGAFVLGCVDETKTLHGHFTHIPASPNQRPRLNGNMKLP 1399
Query: 526 -----FSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 580
SR ++ GL +V +NP LHPGD+RV++A++VP L H+ D VVF Q G R
Sbjct: 1400 EIFLQVPDGPSRDYKVITGLCLVGRNPSLHPGDIRVVQAIDVPQLRHIRDVVVFAQTGDR 1459
Query: 581 PHPNECSGSDLDGDIYFVCWDDELIP-PQQD--PPMDYTPAQSMQLDHDVQIEDVEEYFT 637
P CSG DLDGD +FV WD+ L+P P Q P Y P + +LD +V +D+ ++F
Sbjct: 1460 DIPGMCSGGDLDGDDFFVLWDERLLPLPSQRNYKPASYHPPPARELDREVTADDLCQFFV 1519
Query: 638 NYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVK 697
Y+ N SL IA+AH AD+ A+ E CL+LA S+AVD+PKTGVPA I P L
Sbjct: 1520 TYMKNFSLPRIAHAHLAQADK--YGAKDEKCLELAYLHSLAVDYPKTGVPAAIRPRLMPN 1577
Query: 698 EYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFED 757
E+P FMEK + Y S+ ++GKL+ VK + H + F ++ + D
Sbjct: 1578 EFPHFMEKA-RGRYHSRKILGKLYDQVKPVNFHPAYEMPFDVKILSLYGELSQHGDLGPK 1636
Query: 758 HIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRAL- 816
+ +A K YD + +M + I TE E+ + ++ + ++ + E +G L
Sbjct: 1637 LLREARKLKTLYDQSIMRIMGQHEIATEFEVFSAFVLSSRRVGSQYKLGEIVGQQSATLK 1696
Query: 817 ---RKEARAWFKEKSGSDT----EDDAYAK-ASAWYHVT---YHPDYWGCYNQGMNRD-- 863
R++ A + SG + +A+ A Y VT C +G+ +
Sbjct: 1697 TVFREKCIAALETVSGRTGIKPRDIEAFGPFVVAMYKVTDEEIKIALHECKTRGVKANPK 1756
Query: 864 --HFLSFPWCVYDRLVEIKKDKTSIGNAFPA 892
++FPW LV++ K+++ P+
Sbjct: 1757 SMPLITFPWIFDQILVQLVTGKSNLPCLTPS 1787
>gi|296420862|ref|XP_002839987.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636195|emb|CAZ84178.1| unnamed protein product [Tuber melanosporum]
Length = 1542
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 283/814 (34%), Positives = 429/814 (52%), Gaps = 49/814 (6%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH-ALDKLYHLKECCYE 110
L Y + +++ + + + C++ + F + +I +EH A ++ H Y+
Sbjct: 575 LSYPVRYQLEVCISHNCLSEYNITCEFIDRLAALPKEAAIPLLEHIAERRIRH-----YD 629
Query: 111 PSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF 170
P T Q T K L D + + VTPS VYF P + ++NRV+R +
Sbjct: 630 PMDIFTIQGVTKGTINLK-------LPDHCQLLRKANVTPSTVYFTTPTVEITNRVVRQY 682
Query: 171 RRDIDNFLRISFIDE-DLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKF 229
ID FLR+ F+DE +I+STD T ++TR+ + L +GI IGDRKF
Sbjct: 683 SEHIDRFLRVQFVDEKSQGRINSTDKK---------TMHEVFTRVKAALDHGITIGDRKF 733
Query: 230 EFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 289
EFLAF +SQ+RE A+ FAS L+AA+IR WMG+F EIR VAK+AARLGQ FS+++
Sbjct: 734 EFLAFGNSQIREHGAYFFASDDHLSAADIRAWMGSFSEIRIVAKHAARLGQCFSTTRAIN 793
Query: 290 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL----KDNPPSAFQIR 345
V +D + D+ + Y FSDG+GK+S AR + ++ L K+ PS FQ R
Sbjct: 794 GVRVD-VRTTEDI---VNAEGYNFSDGVGKISEFLARLITTELRLRLVDKEPVPSCFQFR 849
Query: 346 YGGYKGVVAADPTSS-KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLG 404
GG KGV+A P ++ +++ +R S K+E+ L+V+ WSK+ LNRQLI +L++LG
Sbjct: 850 LGGRKGVLAVSPDANHREVYIRPSQLKFEARHNILEVIRWSKFATAALNRQLIIVLTSLG 909
Query: 405 IWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAEPFL 463
D FE K + ++ + + DP A L + P E+T + ++ G+ EPF+
Sbjct: 910 APDHYFEDKLQFMLKSYEVAMVDPGVAVRLLCRNVDPNESTLAIAAMIRAGFMDRREPFV 969
Query: 464 SMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGES 523
+L+ +RA + L+ K +I I G ++G +DET TL+ G + Q G+ + E+
Sbjct: 970 MSLLKLWRAWTIKYLKEKAKIMIEEGAFVLGVVDETGTLD-GYYYSQDEGSTEDADNPET 1028
Query: 524 SL-------FSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQ 576
SL R + I++G V+A+NP LHPGDVR + AVN LHH+ + VVF Q
Sbjct: 1029 SLPQIFLQVTDPDRPGESRIIEGPCVIARNPSLHPGDVRKVMAVNAKELHHLRNVVVFSQ 1088
Query: 577 KGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD-PPMDYTPAQSMQLDHDVQIEDVEEY 635
KG R PN SG DLDGD Y + WD +L + PM+Y+ +L DV+I D+ ++
Sbjct: 1089 KGDRDLPNMLSGGDLDGDDYIIIWDKKLTSCVNNYEPMNYSAQTPRELARDVEIGDITKF 1148
Query: 636 FTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLY 695
F NY+ ND LG IANAH +AD+ +S+ C +LA S AVD+ K+G PA +PP L
Sbjct: 1149 FVNYMKNDKLGTIANAHLAWADKRDEGVKSDECFRLAILHSHAVDYVKSGEPAIMPPELR 1208
Query: 696 VKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGF 755
K +P FMEK + TY S ++G L+ +V I + L + +Y + E+
Sbjct: 1209 RKTFPHFMEKKPEETYRSDKILGVLYDSVSKID-FVPALELEFDDRILNAYTLNEEI--- 1264
Query: 756 EDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRA 815
++ A K YD + +M + I TE E+++ IM S + + E I
Sbjct: 1265 ---LEVARAIKIRYDAAMRRIMAQHDIHTEFEVISIFIMHHSMATKDYKFHEDIASVCNG 1321
Query: 816 LRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYH 849
L+ + E S + +A Y VT+
Sbjct: 1322 LKDTFKKIIYEVVASKDDIIMGPFIAAMYFVTHQ 1355
>gi|86196450|gb|EAQ71088.1| hypothetical protein MGCH7_ch7g495 [Magnaporthe oryzae 70-15]
Length = 1952
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 286/871 (32%), Positives = 448/871 (51%), Gaps = 52/871 (5%)
Query: 50 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 109
+ L +E+ +++ + + +A P + F + R + +E+ +D+ L Y
Sbjct: 916 VQLTWEVRYQLEACISHRMLAEPNITLEFLEKLSEMRPTKARIMLEYVVDRNVKL----Y 971
Query: 110 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 169
P + D+ S P L +V VTPS +Y P + +NRVLRH
Sbjct: 972 NPMQLFKDEG----ASTYWPDITPEELPQYCTMTRKVTVTPSTMYLSSPMVETTNRVLRH 1027
Query: 170 FRRDIDNFLRISFIDE-DLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 228
+ D FLR+ F DE ++H+ P A D I++R+ L+NGI IGDR
Sbjct: 1028 YNEHKDRFLRVQFTDELPTGRLHA----PNDLGADD----EIFSRVYRVLKNGIHIGDRH 1079
Query: 229 FEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 288
++FLAF SSQ+RE+S + F +T IR WMG F IRNV KYAARLGQ FS+++
Sbjct: 1080 YKFLAFGSSQMRENSTYFFCDAGDVTCDSIRAWMGRFSHIRNVGKYAARLGQCFSTTRSI 1139
Query: 289 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGG 348
V M I+ IPD++ K Y F+DG+GK+S+ +A ++ L D PSAFQ R GG
Sbjct: 1140 DRVAMPWIKTIPDIE----KNGYCFTDGVGKISSLWAVVISENLKL-DYIPSAFQFRMGG 1194
Query: 349 YKGV-VAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWD 407
KGV V + +++ +R S K+E++ ++L+V+ S + LNRQ IS+L++LG+ +
Sbjct: 1195 CKGVLVVWEDVKGQEIHIRPSQLKFETDHSRLEVIRCSHFSVASLNRQTISVLTSLGVKN 1254
Query: 408 EIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAEPFLSMM 466
E+FE E + + + + D A L + + + TN L L+ G+ EPF+ M
Sbjct: 1255 EVFESMLAEQLAKYNRAMEDATAAMTLLTQYVDENQMTNTLARLVKAGFMESHEPFVCTM 1314
Query: 467 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSL- 525
L+ +R + L+ K R+ + G ++GC+DET+TL+ + S +L+G L
Sbjct: 1315 LRLWRTWSVKTLKEKARLVVEKGAFVLGCVDETKTLHGHFTHIPASPNQRPRLNGNMKLP 1374
Query: 526 -----FSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 580
SR ++ GL +V +NP LHPGD+RV++A++VP L H+ D VVF Q G R
Sbjct: 1375 EIFLQVPDGPSRDYKVITGLCLVGRNPSLHPGDIRVVQAIDVPQLRHIRDVVVFAQTGDR 1434
Query: 581 PHPNECSGSDLDGDIYFVCWDDELIP-PQQD--PPMDYTPAQSMQLDHDVQIEDVEEYFT 637
P CSG DLDGD +FV WD+ L+P P Q P Y P + +LD +V +D+ ++F
Sbjct: 1435 DIPGMCSGGDLDGDDFFVLWDERLLPLPSQRNYKPASYHPPPARELDREVTADDLCQFFV 1494
Query: 638 NYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVK 697
Y+ N SL IA+AH AD+ A+ E CL+LA S+AVD+PKTGVPA I P L
Sbjct: 1495 TYMKNFSLPRIAHAHLAQADK--YGAKDEKCLELAYLHSLAVDYPKTGVPAAIRPRLMPN 1552
Query: 698 EYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFED 757
E+P FMEK + Y S+ ++GKL+ VK + H + F ++ + D
Sbjct: 1553 EFPHFMEKA-RGRYHSRKILGKLYDQVKPVNFHPAYEMPFDVKILSLYGELSQHGDLGPK 1611
Query: 758 HIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRAL- 816
+ +A K YD + +M + I TE E+ + ++ + ++ + E +G L
Sbjct: 1612 LLREARKLKTLYDQSIMRIMGQHEIATEFEVFSAFVLSSRRVGSQYKLGEIVGQQSATLK 1671
Query: 817 ---RKEARAWFKEKSGSDT----EDDAYAK-ASAWYHVT---YHPDYWGCYNQGMNRD-- 863
R++ A + SG + +A+ A Y VT C +G+ +
Sbjct: 1672 TVFREKCIAALETVSGRTGIKPRDIEAFGPFVVAMYKVTDEEIKIALHECKTRGVKANPK 1731
Query: 864 --HFLSFPWCVYDRLVEIKKDKTSIGNAFPA 892
++FPW LV++ K+++ P+
Sbjct: 1732 SMPLITFPWIFDQILVQLVTGKSNLPCLTPS 1762
>gi|350631624|gb|EHA19995.1| hypothetical protein ASPNIDRAFT_179412 [Aspergillus niger ATCC 1015]
Length = 1201
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 269/762 (35%), Positives = 416/762 (54%), Gaps = 54/762 (7%)
Query: 142 YVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSS 201
++ +TPS VY+ P +++SNR++R + D FLR+ F DE L R ++
Sbjct: 455 HMRSATITPSTVYYNLPSVDISNRIIRRYMEHADRFLRVRFTDEKL--------YGRINA 506
Query: 202 ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 261
+D + I+TRI L NGI+IGDR++EFLAF +SQ RE A+ FA LTAA IR W
Sbjct: 507 RSDNSNDEIFTRIKRALANGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPDLTAANIRAW 566
Query: 262 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 321
MG+F +IRNVAKYAARLGQ FS+++ + +I IPDV+ + Y FSDG+GK+S
Sbjct: 567 MGHFSDIRNVAKYAARLGQCFSTTRAVAGCPV-QIRNIPDVE----RNGYTFSDGVGKIS 621
Query: 322 AEFARKVASKCGLKD---NPPSAFQIRYGGYKGVVAADPTSS-KKLSLRDSMRKYESELT 377
A+ ++ +K PPSAFQ R GG KG++A + +++ +R+S K+ +
Sbjct: 622 RFLAQMAMTELKIKTPTGEPPSAFQFRLGGCKGMLAVSSDAQPQEIHIRESQNKFPTVHN 681
Query: 378 KLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-E 436
L+++ WS++ LNRQLI ++STLG+ DE+F K + +R LD + +A E L +
Sbjct: 682 GLEIIRWSQFSMATLNRQLILVMSTLGVPDEVFHAKLKSMLRALDEAMESDSRAIEVLKK 741
Query: 437 LMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL 496
+ P + T + +++ G++ EPFL+ +L +R + L+ K +I I G +++G +
Sbjct: 742 YVDPNQTTLTVSQMVSDGFRRSKEPFLTSILALWRTWHIKYLKEKAKIVIDKGTNLLGVM 801
Query: 497 DETRTLNYGQVFVQI---SGAGYRQLHGESSLF-------SSSRSRQRFIVQGLVVVAKN 546
DET L G + +I + ++L +F +S +++GL ++A+N
Sbjct: 802 DETGILK-GYFYDKIPKKDASLEQKLAALPEIFLQIPRSEASEDGATYEVIEGLCILARN 860
Query: 547 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIP 606
P LHPGD+RV++AVNVP LH + D VV PQ G R + CSG DLDGD Y + WD +LI
Sbjct: 861 PSLHPGDIRVVRAVNVPELHSLRDVVVLPQTGDRDIASMCSGGDLDGDDYLIIWDQDLI- 919
Query: 607 PQQD---PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
+D PM YT ++ LDHDV +++V +F Y+ NDSL IA+AH +AD+
Sbjct: 920 -HKDWFLDPMRYTSNKAQDLDHDVTVDEVTSFFVMYMKNDSLPTIAHAHVAWADQLEDGV 978
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKP---TYESQNVIGKL 720
E C++LA+ S AVD+ KTG PA + +L + +P FMEKP KP Y S+ ++G+L
Sbjct: 979 NEEKCIRLAQLHSDAVDYNKTGRPAIMTRNLQPRRWPHFMEKP-KPKDLIYHSEKILGQL 1037
Query: 721 FRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYY 780
+ AV+ + S F + + S + + ++ F ++ K +D + +M +
Sbjct: 1038 YDAVERVDFVPSLEMPFDERILNCSIEVNEDLYTFAKNL------KVEHDTAIRRIMAQH 1091
Query: 781 GIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKA 840
IKTE EI + I+ S+ + E IG A R+ R K T + A
Sbjct: 1092 EIKTEFEIWSTFILNHSQMSKDYKFHEEIGAISAAHRETFRKQCYNKVEGRTFELLAPLA 1151
Query: 841 SAWYHVTYHPDYWGCYNQ----------GMNRDHFLSFPWCV 872
A Y VT+ +N+ +SFPW +
Sbjct: 1152 VAMYRVTHEEMTQALRKHREKSPQHGTPKINQLPLISFPWIL 1193
>gi|402075074|gb|EJT70545.1| RNA-dependent RNA polymerase 1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1551
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 289/906 (31%), Positives = 448/906 (49%), Gaps = 100/906 (11%)
Query: 40 LVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALD 99
++ I+ + I LP+E+ +++ + + + + F + + + +E+ +D
Sbjct: 333 MLQILSDSERINLPWEVRYQLEVCISRRHLLESSITLEFLQQLSKMTPREARMVLEYPID 392
Query: 100 KLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPE 159
+ Y+P L + +R P L + + + + VTPS VY P
Sbjct: 393 RRVKF----YDPMLLLQEARE----ARYAPDVHPELLPEYCILMRKAIVTPSTVYLNSPT 444
Query: 160 INVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLR 219
+ +NRVLRH+ D F+RI F DE +H ++ ++ +YTR+ LR
Sbjct: 445 VETTNRVLRHYYDFRDRFMRIQFTDE----LHRGRIN---ATQDQRVNDELYTRVYRVLR 497
Query: 220 NGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLG 279
NGI IGDR ++FLAF +SQ+RESSA+ FA+ +T IR WMG+FR IRNV KYAARLG
Sbjct: 498 NGIFIGDRHYQFLAFGNSQMRESSAYFFAAVGDVTCDSIRAWMGDFRHIRNVGKYAARLG 557
Query: 280 QSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPP 339
Q FS+++ S + I+ IPD++ + Y FSDG+GK+S ++ +++ + L + P
Sbjct: 558 QCFSTTRNIDSTSVQWIKSIPDIE----ENGYCFSDGVGKISQFWSTRISQRLSL-NTYP 612
Query: 340 SAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLIS 398
SAFQ R GG KG++ P + +R S K+++E ++L+V+ S+Y LNRQ I
Sbjct: 613 SAFQFRMGGRKGILTVWPDVKGMDIHVRPSQEKFQTEHSRLEVIRCSQYAVATLNRQTIP 672
Query: 399 LLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL-MSPGENTNILKELLICGYKP 457
+LS LGI D +FE + + D + DP+ A L L + + T L +L++ G
Sbjct: 673 ILSALGIEDHVFEDMLADQLASYDKAMEDPVAAMSLLNLYVDENQMTKALSQLIMAGLMK 732
Query: 458 DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRT---------------- 501
EPF+ ML+ +R + L+ K RI + G ++GC+DET
Sbjct: 733 SQEPFVWTMLRLWRTWSIKSLKEKARIVVEKGAFVLGCVDETGKLRGHYARVKTHPDQRP 792
Query: 502 -LNYG---QVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 557
LN+ Q+F+Q+ G + L+ +V G VV +NP LHPGD+R++
Sbjct: 793 RLNHSELPQIFLQVPD-------GPNGLYK--------VVTGTCVVGRNPSLHPGDLRIV 837
Query: 558 KAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD---PPMD 614
+AV+VP L H+ D VVFP+ G R P+ CSG DLDGD YF+ WD+ L+PP ++ PPM+
Sbjct: 838 EAVDVPELRHLRDVVVFPKSGDRDIPSMCSGGDLDGDDYFIIWDERLVPPPEERSYPPMN 897
Query: 615 YTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEK 674
Y +S+ D DV +D+ +F ++ N SL IA+AH AD +SE C++LA
Sbjct: 898 YEAEKSLDPDRDVTADDLRRFFVLHMKNHSLPTIAHAHLAHAD--CLGVKSEVCIELARL 955
Query: 675 FSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCI 734
S AVD+PKTG+PA + L K+YP FMEK + TY S ++GKL+ V +
Sbjct: 956 HSQAVDYPKTGIPAVVRRGLIPKQYPHFMEKSTRRTYHSGRILGKLYDKVHQATFDPAYE 1015
Query: 735 RLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIM 794
+F + + Y D + A K YD + +M I TE E+ + ++
Sbjct: 1016 MVFDSRILNK-YKLDAAT------LRKARQMKTKYDQAMRRIMGQGDIGTEFEVFSSFVL 1068
Query: 795 KMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTE-DDAYAKAS------------ 841
+ + E +G L+ R E + E DDA
Sbjct: 1069 SRPRVGNAYKHQENVGRESATLKSLFRTKCIEAAAELAEGDDAKGGGGVKIPPSLLRHNL 1128
Query: 842 --------AWYHVT---YHPDYWGCYNQGMNRD----HFLSFPWCVYDRLVEIKKDKTSI 886
A Y VT C ++G + ++FPW L EI TS+
Sbjct: 1129 DVMGPFVVAMYRVTDEEVRIALHECKSRGARPNPKSMPLITFPWIFDTVLTEI---ATSV 1185
Query: 887 GNAFPA 892
GN P+
Sbjct: 1186 GNKPPS 1191
>gi|295667341|ref|XP_002794220.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226286326|gb|EEH41892.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1273
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 269/760 (35%), Positives = 417/760 (54%), Gaps = 43/760 (5%)
Query: 139 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE-DLDKIHSTDLSP 197
G Y+ +VTPS +Y+ P I+ NRVLR +R D FL + F DE ++ KI
Sbjct: 460 GCCYMRSAEVTPSTIYYKPPSIDTGNRVLRRYREYADRFLHVRFTDEKNMGKIFPY---- 515
Query: 198 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAE 257
S+A + +YTR+ T++NGI IGDR +EFLAFS++QLRE +A+ FAS LTAA
Sbjct: 516 --SNANIVCMNEVYTRVTLTMKNGITIGDRCYEFLAFSNAQLREHAAYFFASLPHLTAAN 573
Query: 258 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGI 317
IR +G F +IRNVAK+AARLGQ FSS++ + +EI +I + Y FSDG+
Sbjct: 574 IRAQLGKFNQIRNVAKHAARLGQCFSSTRALNGCPVQIVEI-----DDIERNGYTFSDGV 628
Query: 318 GKVSAEFARKVASKCG---LKDNPPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKYE 373
G +S A+ + S+ L PPS FQ R GG KG++ + ++ + +R S K+
Sbjct: 629 GLISTFLAQMIQSEFAIETLSGEPPSVFQFRLGGCKGILTVSSKAHRREVHIRKSQYKFA 688
Query: 374 SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 433
+ L+++ S + LNRQLI +LS+LGI DEIF KK + + L+ +T +A
Sbjct: 689 APHNGLEIIRHSSFCFASLNRQLIIVLSSLGIPDEIFVKKLQVMLENLELAMTSQEQAVN 748
Query: 434 ALEL-MSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 492
L+ + P + T +L ++++ G++ +PF++ +L+ +R ++ L+ K +I I G +
Sbjct: 749 LLQTYVDPNQMTLVLADMVLDGFQQSQDPFVTSLLELWRVWQIKYLKAKAKIAIDKGAFL 808
Query: 493 MGCLDETRTL-NYGQVFVQISGAGYRQ-LHGESSLFS--SSRSRQRF-IVQGLVVVAKNP 547
+GCLDET +L Y + GA Y Q L +F S S + +++GL ++A+NP
Sbjct: 809 LGCLDETGSLKGYFRSKRPGGGATYEQKLDCLPEIFVQISRHSEDTYEVIEGLCILARNP 868
Query: 548 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 607
LHPGD+RV+KAV++P LHH+ D VV PQ G R + CSG DLDGD Y V WD +L+P
Sbjct: 869 SLHPGDIRVVKAVDIPDLHHLKDVVVLPQTGDRDIASMCSGGDLDGDDYVVIWDQDLLPK 928
Query: 608 QQ-DPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSE 666
+ PMDY+ +S LD DV ++D+ ++F +Y+ ND L IA AH AD + E
Sbjct: 929 DWFEEPMDYSAPKSEVLDRDVTVDDIIKFFVSYMQNDRLPQIAPAHLAIADYSDDGVQDE 988
Query: 667 PCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEK---PDKPTYESQNVIGKLFRA 723
CL+LA S AVD+ K+G+P + L K++P FME+ Y S+ ++G+L+
Sbjct: 989 KCLRLATLHSAAVDYNKSGMPVHMNRDLKPKKWPHFMERKFAKKDSQYTSRKILGQLYDI 1048
Query: 724 VK----DIAPHTSCIRL-FTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMD 778
++ PH++ RL F + + +++ D ++ F + K YD + +M
Sbjct: 1049 AGGVYLNLQPHSAKRRLPFDQRILNANFEIDDKLLSFAKEL------KAEYDADIRRIMA 1102
Query: 779 YYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYA 838
+ I++E E+ + ++ + + E IG+ ALR++ R EK+G
Sbjct: 1103 QHEIQSEEEVWSTFVLSHANMSKDYKFHEEIGLISSALRQKFRMLCHEKAGGKDFKSLAP 1162
Query: 839 KASAWYHVTYH------PDYWGCYNQGMNRDHFLSFPWCV 872
A A Y VT + C R +SFPW +
Sbjct: 1163 LAVAMYRVTSEQMEKAKAAHSHCTLGEEQRMPLISFPWVL 1202
>gi|407918335|gb|EKG11606.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina phaseolina
MS6]
Length = 1511
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 278/829 (33%), Positives = 424/829 (51%), Gaps = 111/829 (13%)
Query: 50 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 109
I L +E+ +++ + + N + + F + ++ S +E A+DK K +
Sbjct: 350 IKLEFEVRYQLEVCLSNNILNEHNVTREFVERLAQMDKKMAKSVLEAAMDK----KRRFF 405
Query: 110 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 169
EP RK + P+ VY +TPS + F P + +SNR++R
Sbjct: 406 EPMDIFKLPLRKEAMLKQTPAH--------CVYSRSANITPSTITFASPTMEISNRIIRE 457
Query: 170 FRRDIDNFLRISFIDEDLDKIHSTDLSPRGS--SATDITRTRIYTRILSTLRNGILIGDR 227
+ R D FLR+ F +E PRG S+ D T ++TR+ TLRNGI IGDR
Sbjct: 458 YLRFSDRFLRVKFTEE----------KPRGKIRSSRDDKDTELFTRVWRTLRNGIAIGDR 507
Query: 228 KFEFLAFSSSQLRESSAWMFA-------SRYGLTAAEIREWMGNFREIRNVAKYAARLGQ 280
+EFLAF +SQ RE A+ FA +T ++IR MG+F EI+ VA+YA+R+GQ
Sbjct: 508 HYEFLAFGNSQFREHGAYFFAPIEDDLCDENNITPSDIRMLMGDFDEIQEVARYASRMGQ 567
Query: 281 SFSSSKETLSV--HMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCG---LK 335
FS+++E SV H+ E +I + Y+F+DG+GK+SA A K+A + G
Sbjct: 568 CFSTTREATSVKAHVSGHE-------DIMRNGYIFTDGVGKISAALAVKIAQEFGHPTAV 620
Query: 336 DNPPSAFQIRYGGYKGVVA-ADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNR 394
++PPS FQ R GG KGV+A + + ++ +R S K+ + L+++ WS++ LNR
Sbjct: 621 EDPPSVFQFRLGGCKGVLAVSKELGADEIHIRRSQDKFPAPSEGLEIIKWSQFATATLNR 680
Query: 395 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI-LKELLIC 453
QLI +L G+ + +F KK ++ + L +T + A L+ ++ L +++
Sbjct: 681 QLIIILDARGVPNGVFMKKLQDQLSDLKKAMTSEVVALRLLQRFVDSNQVSLTLAGMVLD 740
Query: 454 GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN---------- 503
G+ EPFL +L +R + L+ K R+F+ G ++GCLDET +L+
Sbjct: 741 GFMGIKEPFLMSVLHLWRTWSIKYLKEKARLFVGEGAFLLGCLDETASLHGHFYSEQNWK 800
Query: 504 ------YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 557
Q+FVQ+S + + I++G+ +VA+NP LHPGDVRV+
Sbjct: 801 SLQTNLLPQIFVQVSDINHPGRYK--------------IIEGVCIVARNPSLHPGDVRVV 846
Query: 558 KAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTP 617
+AVN P LHH+ + VVFPQ G R PN CSG DLDGD Y V WD ELIP + PMD+TP
Sbjct: 847 QAVNQPKLHHLKNVVVFPQTGDRDIPNMCSGGDLDGDDYMVVWDKELIPQKNYKPMDFTP 906
Query: 618 AQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSI 677
Q ++ V +E + ++F YI NDSLG+IANAH AD E S+ CL+LA S
Sbjct: 907 PQKQTVEK-VTMEHITKFFVEYIKNDSLGVIANAHLAAADFEDEGVMSKRCLELARIHST 965
Query: 678 AVDFPKTGVPAEIPPHLYVKEYPDFMEK-----PDKPTYESQNVIGKLFRAVKDIAPHTS 732
AVD+PK+GV A + L + YP FM+ + YES+ ++G+LF AVK++
Sbjct: 966 AVDYPKSGVAAIMDKRLAPRRYPHFMQNNFRNLENGRCYESKKILGQLFDAVKEV----- 1020
Query: 733 CIRLFTKEVARRSYDPDMEVDGFEDHIDDA-------IYHKGN----YDYKLGNLMDYYG 781
+DP + F+ I +A + G YD + LM +
Sbjct: 1021 ------------DFDPQYDAP-FDSRILNAYNLEPATLARAGALKVLYDAAVRRLMAQHD 1067
Query: 782 IKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKE-ARAWFKEKSG 829
I+TE E+ + I+K + E G LR+ + F+E +G
Sbjct: 1068 IQTEFEVWSTFILKHNNEIRDYSLQEDFGRIWDGLRERFQKLCFEEAAG 1116
>gi|440633273|gb|ELR03192.1| hypothetical protein GMDG_01175 [Geomyces destructans 20631-21]
Length = 1568
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 266/814 (32%), Positives = 425/814 (52%), Gaps = 52/814 (6%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 111
LP+E+ +++ + C++ +L+ + + P S ++ ++ + E E
Sbjct: 419 LPFEVRYQLEV-----CISRNILEVHN---ITPEFVKELASLVDTDKERATCILEYISEQ 470
Query: 112 SRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFR 171
+ + D + + SP + Y + VTP+ +YF P + SNRV+R F
Sbjct: 471 GKRIYDVMSIFKDPDALAHSPKSKIPTYCAYTRKATVTPTTIYFSSPTVETSNRVIRKFS 530
Query: 172 RDIDNFLRISFIDEDLD-KIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFE 230
D FLR+ F DE + +I++ A I +++TR+ TL+NGI IGDR FE
Sbjct: 531 AHGDRFLRVQFTDELFEGRINA--------CADKIRNDQLFTRVYRTLKNGIRIGDRHFE 582
Query: 231 FLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLS 290
FLAF +SQ RE+ A+ F GL+ +IR+WMG F I VAKYAARLG FS+++ +
Sbjct: 583 FLAFGNSQFRENGAYFFCPTDGLSCVQIRDWMGKFHHINVVAKYAARLGLCFSTTRAIRN 642
Query: 291 VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYK 350
M +E+ E+ + Y F+DG+GK+S + +A++ L + PS Q R GG K
Sbjct: 643 TGMTVLELQ-----EVERNGYNFTDGVGKISPFLMKMIATELHLL-HEPSVVQFRMGGCK 696
Query: 351 GVVAADPTS-SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEI 409
G++A P + +++ +R S K+ +E L+++ S + LNRQ I++LS LG+ D +
Sbjct: 697 GILAISPDAKGQEIHIRKSQTKFTAEYMGLEIIRTSSHSVATLNRQTITILSALGVEDHV 756
Query: 410 FEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAEPFLSMMLQ 468
F + E + + DP KA E L + T ++ +++ G+ EPF+ +L
Sbjct: 757 FNRMLDEQLSNYMDAMNDPDKALELLGRYVDDNHMTMMIASMVLDGFMRTKEPFVLSLLH 816
Query: 469 TFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGES----- 523
+R+ + L+ K +I + G ++GC DET+TL + + + AG + E
Sbjct: 817 LWRSWSIKLLKEKAKIIVEKGAFVLGCTDETQTL---RGHSKTTNAGKGTITAEDIDKLP 873
Query: 524 ----SLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGM 579
+ R I++GL +V +NP LHPGD+RV++AV+VPALHH+ D VVF Q G
Sbjct: 874 QIYLQVTDRKDPRHNVIIEGLCLVGRNPSLHPGDIRVVQAVDVPALHHLRDVVVFSQLGD 933
Query: 580 RPHPNECSGSDLDGDIYFVCWDDELIPPQQDP-PMDYTPAQSMQLDHDVQIEDVEEYFTN 638
R P CSG DLDGD +FV WD +L+P + + PMDYT ++LD V+I DV +F
Sbjct: 934 RDVPGMCSGGDLDGDDFFVIWDQDLLPREWNAEPMDYTAPPPVKLDRPVEINDVMSFFVK 993
Query: 639 YIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKE 698
Y+ +D+L IA+AH +D+ R CL+LA S AVDF K+G+PAE+P +L ++
Sbjct: 994 YMKSDTLPTIAHAHLALSDQLDFSVRDPKCLELAALHSKAVDFVKSGIPAEMPKYLRPRK 1053
Query: 699 YPDFMEKPDKP---TYESQNVIGKLFRAVK--DIAPHTSCIRLFTKEVARRSYDPDMEVD 753
+P FMEK KP Y S+ ++G+L+ V+ D PH F K + R+Y D +
Sbjct: 1054 WPHFMEKKHKPKEQIYVSKKILGQLYDKVESVDFIPHYESP--FDKRIL-RAYPEDRAIL 1110
Query: 754 GFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAV 813
I K YD + +M + I+TE E+ T ++ + + + E +G+
Sbjct: 1111 KLARQI------KSQYDTAMRRIMAQHDIETEFEVWTSFVLSKPRVGSDYKVQEEMGIIS 1164
Query: 814 RALRKEARAWFKEKSGSDTEDDAYAKASAWYHVT 847
L+ + E +G A+A Y VT
Sbjct: 1165 STLKARFKEICVEAAGGSDFKALGPFATAMYQVT 1198
>gi|378728086|gb|EHY54545.1| RNA-directed RNA polymerase [Exophiala dermatitidis NIH/UT8656]
Length = 1461
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 289/876 (32%), Positives = 451/876 (51%), Gaps = 81/876 (9%)
Query: 49 GIALPYEILFKINLLVQNGCVAGPLLDSNFY-RLVDPYRAPVSISCIEHALDKLYHL--- 104
I L +++ +++ + + G + +D F RL R + A L H+
Sbjct: 375 AIHLDFDLRYQLEVCISQGWLNEYTIDKEFLQRLTSLPR--------QRAKQMLIHVDSY 426
Query: 105 KECCYEPSRWLTD-QYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVS 163
+E Y+P D +Y K + +R+ P++ ++ VT S V F P + ++
Sbjct: 427 QERIYDPMTIFKDLRYSKPVRARALPTN--------CNEIYHATVTASGVLFHTPSVEIT 478
Query: 164 NRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSS----ATDITRTRIYTRILSTLR 219
NR++R + R D FLR+ F D+ S RG S AT+ ++ R+ TL+
Sbjct: 479 NRIIRKYERYNDRFLRVRFEDD----------SYRGKSRLYPATNGRMRLLFERVRRTLK 528
Query: 220 NGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLG 279
+GI+I DR +EFLA+ +SQLRE A+ FAS + +T IR MG F + VAK AAR+G
Sbjct: 529 HGIIIADRHYEFLAWGNSQLREHGAYFFASTHDITPDTIRRSMGIFDSEKVVAKRAARMG 588
Query: 280 QSFSSSK--ETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 337
Q FS+++ LS +I DV I + F+DG+GK+S A+ V S L+
Sbjct: 589 QCFSTTRAVSVLSKRAFHKRLIDDVII----NGHTFTDGVGKISMLGAQLVCSSLKLRGK 644
Query: 338 PPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQL 396
PSA+Q R GG KGV+A DP + +R S K++SE +L+++ S++ FLNRQL
Sbjct: 645 VPSAYQFRLGGCKGVLALDPLLPGVDIKIRPSQYKFQSESDELEIIRVSEFWQPFLNRQL 704
Query: 397 ISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGY 455
I +LS LG+ DE+F +KQ + ++ LD + D A AL + + P T + ++ G+
Sbjct: 705 ILVLSDLGVPDEVFLQKQEDCIKALDRAMVDDTAALRALRDNVDPNLTTLSIAAMIEDGF 764
Query: 456 KPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG 515
+ E F++ +L+ +RA L L+ K +I +P G ++G +DET L + FV G+
Sbjct: 765 RQSNEIFVTSLLRLYRAWTLKYLKEKAKIPVPQGAFVLGVVDETNKLRGHEPFVS-PGSE 823
Query: 516 YRQLHGESSLF---SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCV 572
L +F + + QR IV+G+ ++A+NP LH GD+RV+ AV++PALHH+ D V
Sbjct: 824 PPTLQDLPQIFMQYTDQHTGQRRIVEGVCIIARNPSLHRGDIRVVHAVDIPALHHLCDVV 883
Query: 573 VFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD---PPMDYTPAQSMQLDHDVQI 629
V P +G R P+ CSG DLDGD Y V WD +LIPPQ++ P Y + + D ++
Sbjct: 884 VMPIQGERDLPSMCSGGDLDGDDYVVIWDPDLIPPQEEWFVEPFSYAAPKPVGKD-EITT 942
Query: 630 EDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAE 689
+D+ +F +Y+ ND LG IA+AH AD RS+ CL L S AVD+PKTGVPAE
Sbjct: 943 DDIINFFCDYMQNDFLGRIAHAHLAAADYLDEGIRSDVCLSLVNLHSKAVDYPKTGVPAE 1002
Query: 690 IPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPD 749
+P L ++P FMEK P Y+S ++G+L+ AV+ +A + F + + + P
Sbjct: 1003 MPRELERNKWPHFMEKRRAPQYKSHKILGQLYDAVERVAFEPNWEGSFDQRILKHQLPP- 1061
Query: 750 MEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAI 809
E +++ K +YD + +M + I TE E+ + ++ SK+ + E I
Sbjct: 1062 ------ESVVEEVRRLKKSYDEGMRRIMAQHQINTEFEVWSTFVLHHSKAARDFKFHEEI 1115
Query: 810 GMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYH------------------PD 851
G R L+++ E +G + A A YH+TY D
Sbjct: 1116 GQHARTLKEQYYDVLVEHAGGRDFEKLMPMAVAAYHITYDEFRQAQEAVDGSVIDEVFSD 1175
Query: 852 YWGCYNQGMNRDH-----FLSFPWCVYDRLVEIKKD 882
G F+SFPW + D L I ++
Sbjct: 1176 AAGSRASSAGGPQAKEMPFISFPWVLQDILGRIARN 1211
>gi|261204627|ref|XP_002629527.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
gi|239587312|gb|EEQ69955.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
Length = 1633
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 288/883 (32%), Positives = 451/883 (51%), Gaps = 92/883 (10%)
Query: 44 VGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH-ALDKLY 102
+G + I LP+ + +++ + + + + ++ F R + + +EH A++K
Sbjct: 557 LGEDEYIPLPFSVRYQLEVCMSHRYINEYTIEETFVRRLVQLGEKKAKELLEHVAMNKTI 616
Query: 103 HLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINV 162
+ Y+P + K T+ P Y+ VTPS + + P ++
Sbjct: 617 Y-----YDPMGIFNIPFPKGATNGRIPGH--------CCYIRSADVTPSTICYDIPSVDT 663
Query: 163 SNRVLRHFRRDIDNFLRISFIDED-LDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNG 221
SNRV R+ R D FLR+ F DE + KI+ + S ++Y R+L TL++G
Sbjct: 664 SNRVFRYHREHADRFLRVRFCDEKYIGKIYPNN------SGNSQCMEKVYARVLRTLQHG 717
Query: 222 ILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQS 281
I IGDR++EFLAF +SQLRE A+ FAS LTAA IR MG+ IR VAKYAARLGQ
Sbjct: 718 ITIGDRRYEFLAFGNSQLREHGAYFFASLPHLTAANIRAQMGDLNNIRVVAKYAARLGQC 777
Query: 282 FSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD---NP 338
FS+++ S + +I+ I D++ + YVFSDG+G++S + + S G+K P
Sbjct: 778 FSTTRAVTSCPV-QIKKIDDIE----RNGYVFSDGVGRLSHFLTQMIQSDLGIKTPSGEP 832
Query: 339 PSAFQIRYGGYKGVVAADPTS-SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLI 397
PS FQ R GG KG++A P + +++ +R S K+ + L+++ +S + LNRQLI
Sbjct: 833 PSVFQFRLGGCKGILAVSPEARQREVHIRRSQFKFPASHNGLEIIRYSHFSYATLNRQLI 892
Query: 398 SLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYK 456
+LS LG DE+F K + L+ +TD KA L+ + P + T +L +++ G++
Sbjct: 893 LILSALGTPDEVFIAKLSMMLANLEQAMTDEDKAVSLLQKYVDPNQMTLVLADMIRDGFQ 952
Query: 457 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN------------- 503
EPF+S +L+ +R ++ L+ K +I I G ++GC+DET+TL
Sbjct: 953 GSREPFVSSLLELWRTWQIKYLKEKAKIAIDEGAFLLGCIDETKTLKGYFRSARPKANST 1012
Query: 504 -------YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRV 556
++FVQ+ +R G+ + +++GL ++A+NP LHPGD+RV
Sbjct: 1013 YQERVDCLPEIFVQV----WRHSEGKYA-----------VIEGLCILARNPSLHPGDIRV 1057
Query: 557 LKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ-DPPMDY 615
+KAV+ PALHH+ D VV PQ G R N CSG DLDGD Y V WD ++P PMD
Sbjct: 1058 VKAVDAPALHHLRDVVVLPQTGDRDLANICSGGDLDGDDYIVIWDKSMLPTDWFHEPMDN 1117
Query: 616 TPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKF 675
+ LD DV ++D+ +++ NY+ N L IA AH AD + + E C+QLA
Sbjct: 1118 CAPKPEVLDRDVTVDDITKFYVNYMQNCCLSQIARAHMALADFQEDGVKDEKCIQLAALH 1177
Query: 676 SIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDK---PTYESQNVIGKLFRAVKDIAPHT- 731
S AVD+ K+G+P + +L K +P FME+ K Y S ++G+L+ D+A H
Sbjct: 1178 SAAVDYNKSGIPVRMTRNLKPKVWPHFMERKMKNKNAEYRSAKILGQLY----DMASHID 1233
Query: 732 --SCIRLFTKE----VARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTE 785
S I+ + E +R +EVD E + A K YD + +M + I+TE
Sbjct: 1234 IRSKIQFLSPEERPQFDKRILKSGIEVD--EKLLSVATDLKMQYDTDMRRIMARHEIETE 1291
Query: 786 AEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYH 845
E+ + ++ S+ + E IG ALR++ +EK+G + + A A Y
Sbjct: 1292 LEVWSTFVLSHSEMSNDYKFHEDIGRISSALREKFSTLCQEKAGGNDFEHLAPLAVAMYK 1351
Query: 846 VTYHPDYWGCY---------NQGMNRDHFLSFPWCVYDRLVEI 879
VT N+ R +SFPW + L +I
Sbjct: 1352 VTSEQMEAAMAEKSAVLIENNKMEKRLPLISFPWVLQQVLGKI 1394
>gi|326481841|gb|EGE05851.1| hypothetical protein TEQG_04860 [Trichophyton equinum CBS 127.97]
Length = 1579
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 263/828 (31%), Positives = 422/828 (50%), Gaps = 104/828 (12%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 111
+ Y + +++ + + +G ++ +D +F + ++ +E+ + K +P
Sbjct: 537 ISYAVRYQLEVCISHGFLSEYTIDKDFAKKLESLGERDGKDLLEYVAQE----KTVYLDP 592
Query: 112 SRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFR 171
Q+ +T+R P Y+ VTPS +YF P ++ SNRV+RH+
Sbjct: 593 MEIFNIQFFSGVTNRRIPKY--------CCYMRSATVTPSTIYFNTPTVDTSNRVIRHYI 644
Query: 172 RDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEF 231
D FLR+ F DE + R +S + ++TR+ T+ NGI +GDR +EF
Sbjct: 645 EYADRFLRVRFTDEKYEG--------RINSTYNNCMDEVFTRVKRTMTNGITVGDRHYEF 696
Query: 232 LAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLS- 290
LAF +SQ RE A+ FAS LTAA IR WMG+F +I+ VAK+AARLGQ FS+++
Sbjct: 697 LAFGNSQFREHGAYFFASLPNLTAANIRAWMGHFSDIKIVAKHAARLGQCFSTTRAVTGC 756
Query: 291 -VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIRY 346
V + EI+ E+ + Y+FSDG+G++S A+ + ++ L+ + PPS FQ R
Sbjct: 757 PVTVREID-------EVERNGYIFSDGVGRISKFLAQMIMTEFKLQTPSEEPPSVFQFRL 809
Query: 347 GGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIW 406
GG S L+++ WS++ LNRQLI +LS LG+
Sbjct: 810 GG-------------------------SIHNGLEIIRWSQFAAAHLNRQLIVVLSALGVS 844
Query: 407 DEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYKPDAEPFLSM 465
DEIF +K R + ++ +T KA L+ + P + T IL +++ G++ +PF+
Sbjct: 845 DEIFIQKLRLMLEDMEQAMTSETKAMSMLQKRVDPNQMTLILAQMVHDGFQGSCDPFVKS 904
Query: 466 MLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN--------------------YG 505
+L+ +RA ++ L+ K ++FI G + GCLDET TL
Sbjct: 905 LLELWRAWQIKYLKEKAKVFIDQGACLFGCLDETATLKGYHEKKRPSIEATYEERLEYLP 964
Query: 506 QVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 565
++FVQ+ F + ++ +++G ++A+NP LHPGD+RV++AVNVPAL
Sbjct: 965 EIFVQV--------------FDNEEEKKYRVIEGPCILARNPSLHPGDIRVVRAVNVPAL 1010
Query: 566 HHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD---PPMDYTPAQSMQ 622
HH+ D +VFPQ G R P+ CSG DLDGD Y V WD +L+P +D PMDYT + +
Sbjct: 1011 HHLKDVIVFPQTGDRDVPSTCSGGDLDGDDYIVIWDQDLVPLPKDWFREPMDYTASNAQS 1070
Query: 623 LDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFP 682
L DV + D+ +F Y+ ND L IA+AH FAD E C+QLA+ S AVD+
Sbjct: 1071 LTRDVTVNDITSFFVTYMKNDRLPQIAHAHLAFADYLEDGVNDERCIQLAQLHSAAVDYN 1130
Query: 683 KTGVPAEIPPHLYVKEYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIRLFTK 739
K+G+PA + L +++P FMEK KP Y+S+ ++G+++ V+ + F +
Sbjct: 1131 KSGIPANMTRDLVPRKWPHFMEKKYKPKEAQYQSKKILGQIYDIVERVEFRPKLEAPFDE 1190
Query: 740 EVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKS 799
+ + ++ ED + A K YD + +M + IKTE E+ + ++ +
Sbjct: 1191 RIL------NCDISVSEDMVLAAKKLKSLYDADMRRIMAQHEIKTEFEVWSTFVLGHANM 1244
Query: 800 FTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVT 847
+ E +G ALR + ++++G A A Y VT
Sbjct: 1245 SKDYKFHEELGQISSALRDRFLSMCQDEAGGRDFQHLAPLAVAMYRVT 1292
>gi|327353920|gb|EGE82777.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1672
Score = 421 bits (1081), Expect = e-114, Method: Compositional matrix adjust.
Identities = 287/883 (32%), Positives = 450/883 (50%), Gaps = 92/883 (10%)
Query: 44 VGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH-ALDKLY 102
+G + I LP+ + +++ + + + + ++ F R + + +EH A++K
Sbjct: 596 LGEDEYIPLPFSVRYQLEVCMSHRYINEYTIEETFVRRLVQLGEKKAKELLEHVAMNKTI 655
Query: 103 HLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINV 162
+ Y+P + K T+ P Y+ VTPS + + P ++
Sbjct: 656 Y-----YDPMEIFNIPFPKGATNGRIPGH--------CCYIRSADVTPSTICYDIPSVDT 702
Query: 163 SNRVLRHFRRDIDNFLRISFIDED-LDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNG 221
SNRV R+ R D FLR+ F DE + KI+ + S ++Y R+L TL++G
Sbjct: 703 SNRVFRYHREHADRFLRVRFCDEKYIGKIYPNN------SGNSQCMEKVYARVLRTLQHG 756
Query: 222 ILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQS 281
I IGDR++EFLAF +SQLRE A+ FAS LTAA IR MG+ IR VAKYAARLGQ
Sbjct: 757 ITIGDRRYEFLAFGNSQLREHGAYFFASLPHLTAANIRAQMGDLNNIRVVAKYAARLGQC 816
Query: 282 FSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD---NP 338
FS+++ S + +I+ I D++ + YVFSDG+G++S + + S G+K P
Sbjct: 817 FSTTRAVTSCPV-QIKKIDDIE----RNGYVFSDGVGRLSHFLTQMIQSDLGIKTPSGEP 871
Query: 339 PSAFQIRYGGYKGVVAADPTS-SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLI 397
PS FQ R GG KG++A P + +++ +R S K+ + L+++ S + LNRQLI
Sbjct: 872 PSVFQFRLGGCKGILAVSPEARQREVHIRRSQFKFPASHNGLEIIRHSHFSYATLNRQLI 931
Query: 398 SLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYK 456
+LS LG DE+F K + L+ +TD KA L+ + P + T +L +++ G++
Sbjct: 932 LILSALGTPDEVFIAKLSMMLANLEQAMTDEDKAVSLLQKYVDPNQMTLVLADMIRDGFQ 991
Query: 457 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN------------- 503
EPF+S +L+ +R ++ L+ K +I I G ++GC+DE++TL
Sbjct: 992 GSREPFVSSLLELWRTWQIKYLKEKAKIAIDEGAFLLGCIDESKTLKGYFRSARPKANST 1051
Query: 504 -------YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRV 556
++FVQ+ +R G+ + +++GL ++A+NP LHPGD+RV
Sbjct: 1052 YQERVDCLPEIFVQV----WRHSEGKYA-----------VIEGLCILARNPSLHPGDIRV 1096
Query: 557 LKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ-DPPMDY 615
+KAV+ PALHH+ D VV PQ G R N CSG DLDGD Y V WD ++P PMD
Sbjct: 1097 VKAVDAPALHHLRDVVVLPQTGDRDLANICSGGDLDGDDYIVIWDKSMLPTDWFHEPMDN 1156
Query: 616 TPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKF 675
+ LD DV ++D+ +++ NY+ N L IA AH AD + + E C+QLA
Sbjct: 1157 CAPKPEVLDRDVTVDDITKFYVNYMQNCCLSQIARAHMALADFQEDGVKDEKCIQLAALH 1216
Query: 676 SIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDK---PTYESQNVIGKLFRAVKDIAPHT- 731
S AVD+ K+G+P + +L K +P FME+ K Y S ++G+L+ D+A H
Sbjct: 1217 SAAVDYNKSGIPVRMTRNLKPKVWPHFMERKMKNKNAEYRSAKILGQLY----DMASHID 1272
Query: 732 --SCIRLFTKE----VARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTE 785
S I+ + E +R +EVD E + A K YD + +M + I+TE
Sbjct: 1273 IRSKIQFLSPEERPQFDKRILKSGIEVD--EKLLSVATDLKMQYDTDMRRIMARHEIETE 1330
Query: 786 AEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYH 845
E+ + ++ S+ + E IG ALR++ +EK+G + + A A Y
Sbjct: 1331 LEVWSTFVLSHSEMSNDYKFHEDIGRISSALREKFSTLCQEKAGGNDFEHLAPLAVAMYK 1390
Query: 846 VTYHPDYWGCY---------NQGMNRDHFLSFPWCVYDRLVEI 879
VT N+ R +SFPW + L +I
Sbjct: 1391 VTSEQMEAAMAEKSAVLIENNKMEKRLPLISFPWVLQQVLGKI 1433
>gi|242812975|ref|XP_002486072.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces stipitatus
ATCC 10500]
gi|218714411|gb|EED13834.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces stipitatus
ATCC 10500]
Length = 1341
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 271/815 (33%), Positives = 436/815 (53%), Gaps = 50/815 (6%)
Query: 50 IALPYEILFKINLLVQNGCVAG-PLLDSNFYRLVDPYRAPVSISCIEH-ALDKLYHLKEC 107
I LP+ I +++ + + +G ++ F + + +++ +EH A+DK +
Sbjct: 419 IHLPFAIRYQLEVCISHGYISEYTAAKPEFIQRLKDMEERKALALLEHVAMDK-----KV 473
Query: 108 CYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVL 167
++ + + T R+ PS + V VTPS +Y+ P + ++NRVL
Sbjct: 474 YWDAMNIFDILFPRGTTRRNIPSYCCM--------VRTATVTPSMIYWNTPSMEITNRVL 525
Query: 168 RHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDR 227
R + D FLR+ F DE + R +S T I++RI T+ NGI++GDR
Sbjct: 526 RRYSEHADRFLRVRFKDEKFEG--------RINSTHHDTMDEIFSRIKRTMTNGIVLGDR 577
Query: 228 KFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKE 287
K+EFLAF +SQ RE A+ FAS +TA+ IR WMG F +I+NVAKYAARLGQ FS+++
Sbjct: 578 KYEFLAFGNSQFREHGAYFFASDAHVTASNIRAWMGEFSDIKNVAKYAARLGQCFSTTRA 637
Query: 288 TLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQI 344
+ + E++ IPDV+ + Y FSDG+G++S A+ + ++ PPSA+Q
Sbjct: 638 INTCRV-ELKRIPDVE----RGPYTFSDGVGRISRFLAQMTQQELNIRTADQEPPSAYQF 692
Query: 345 RYGGYKG-VVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTL 403
R GG KG +V +D +++ +R S K+ + L+++ WS++ LNRQLI++LS+L
Sbjct: 693 RLGGCKGMLVLSDEPRGREIEIRPSQEKFPANHQGLEIIRWSQFSSATLNRQLIAVLSSL 752
Query: 404 GIWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYKPDAEPF 462
GI D++F K + V L+ A L+ + P E T ++ +++ G+ +PF
Sbjct: 753 GIEDKVFHGKLQRMVSNLEEATHYDRAAMHLLQKYIDPNEMTLVISKIVSDGFLQARDPF 812
Query: 463 LSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL---NYGQVFVQISGAGYRQL 519
++ ++ ++A ++ L+ K +I I +G ++G +DET TL +Y V ++ + +L
Sbjct: 813 ITSVITLWKAWQIKYLKEKAKITIEDGACVLGVMDETATLKGFSYENV-EKVHLSRDSKL 871
Query: 520 HGESSLFSS---SRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQ 576
+F + ++ +V+G+ ++A+NP LHPGD+RV++AVN L H+ D VV PQ
Sbjct: 872 DALPEIFLQVYRADEKKYGVVEGVCILARNPSLHPGDIRVVRAVNRSELAHLKDVVVLPQ 931
Query: 577 KGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ-DPPMDYTPAQSMQLDHDVQIEDVEEY 635
G R + CSG DLDGD Y V WD +LIP Q PMDYT + + L+ V + D+ +
Sbjct: 932 VGDRDIASMCSGGDLDGDDYLVIWDQDLIPSQWFRTPMDYTAIKGVNLNRAVTVNDITTF 991
Query: 636 FTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLY 695
F NY+ NDSL IA+AH +AD S C++LA+ S AVD+ KTG PA +P L
Sbjct: 992 FVNYMKNDSLPKIAHAHMAWADYLEDGVESAKCIRLAQLHSNAVDYNKTGEPAYLPRDLR 1051
Query: 696 VKEYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEV 752
+++P FMEK KP Y S+ ++G+L+ AV + H R F K V + E+
Sbjct: 1052 PRKWPHFMEKNYKPKDQIYHSEKILGQLYDAVDRVDFHPDFDRPFDKRVLEAGIEVTDEI 1111
Query: 753 DGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMA 812
F + K +YD L +M + I+TE EI + ++ + + E +G
Sbjct: 1112 LQFVKEL------KVDYDLSLKRIMAQHEIRTEFEIWSTFVLGHANLSKDYKFHEELGGI 1165
Query: 813 VRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVT 847
+A++ + K G D A A Y VT
Sbjct: 1166 TKAIKDRFQGECYAKVGGRDFDRIAPVAVAIYRVT 1200
>gi|391331492|ref|XP_003740179.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Metaseiulus
occidentalis]
Length = 1286
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 284/774 (36%), Positives = 416/774 (53%), Gaps = 71/774 (9%)
Query: 139 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPR 198
G VYV RV VTP+R+ +++ NR+LRHF D + +R+ F D++LDK+ + L+ R
Sbjct: 326 GTVYVRRVFVTPTRMILRFADLHTQNRILRHF--DSEYAIRVCFRDDNLDKLTFSVLNMR 383
Query: 199 GSSATDITRTRIYTRILST-LRNGILIGDRKFEFLAFSSSQLRESSAWMFA-SRYGLTAA 256
+ ++ +R+GI IGDRK+ ++A SSSQLR+ W +A G AA
Sbjct: 384 -------EKLPFLNHVVGDHIRSGITIGDRKYMYVAASSSQLRDHGVWFYALDPSGFDAA 436
Query: 257 EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSV------HMDEIEIIPDVKIEIGKTK 310
IR+WMG+F I NVA AR+GQ FSS++ET+ V H D+I P+ K
Sbjct: 437 SIRQWMGDFSNISNVATRMARMGQCFSSTQETVEVTPLEEVHEDDI-WYPEQVHPTSKKP 495
Query: 311 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSM 369
Y FSDG GK+S +V + PSA QIRY G KG+V DP+ ++L LR SM
Sbjct: 496 YCFSDGCGKISPSLLSEVWGSLPHTISQPSALQIRYRGCKGMVCLDPSLEGRQLVLRKSM 555
Query: 370 RKYESELT-KLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL-DAILTD 427
K+E KL+V+ WS FLNR I++L G+ ++F + + E + Q+ D+++ +
Sbjct: 556 VKFECNSNRKLEVIKWSAPMNMFLNRPFIAILEHHGVKIDVFLRLELEMILQIADSLVCE 615
Query: 428 PLKAQEALELMSPGENTNI-LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 486
AL +++ T I L G++ +PF + ML + L+ L+ K I I
Sbjct: 616 A----SALRVLTSFVKTPIPFYGLAETGWQLVQDPFFTQMLFDLLKTSLMSLKEKANIAI 671
Query: 487 P--NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 544
P GR+M+G +DET L YGQVF+Q + S+ F S++R R +V VVV
Sbjct: 672 PVNEGRNMLGVVDETGLLEYGQVFIQFT-------EMPSAPFQISQARTR-VVDADVVVT 723
Query: 545 KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDEL 604
K PCLHPGDVR L+AV++P LHH+ DC+VFP KG PHP E SGSDLDGD Y W ++L
Sbjct: 724 KCPCLHPGDVRRLRAVDIPELHHVRDCIVFPAKGKAPHPFEMSGSDLDGDEYICIWKEDL 783
Query: 605 IPPQQDPPMDY--TPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRK 662
I + P Y P ++ + + +V + +YI ND +GII+NAH +AD+ R
Sbjct: 784 IFEENVEPYLYDDKPLGVVK-PYQRPVHEV-SFLCSYIANDMIGIISNAHLAWADQ--RG 839
Query: 663 ARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPD-KPTYESQNVIGKLF 721
S+ CL L +K S A+DF KTG ++ P+ + +PDFMEK D K +Y+S +G L+
Sbjct: 840 LISDECLALVDKASKALDFAKTGHSVDLHPNEKPERFPDFMEKGDHKHSYQSNKALGILY 899
Query: 722 RAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYG 781
R V+ I T+ + + P +EV G++ DDA Y+ +L N+MD +G
Sbjct: 900 RTVRQIMSVND-----TQLSSGHKFSP-LEVPGWQMFRDDAYAAMRRYNQRLANIMDQHG 953
Query: 782 IKTEAEILTGSIMKMSKSFTKRRDAEAIGMAV----RALRKEARAWFKEKSGSD------ 831
I +E E+ +G I ++ R + ++ + V AL +E R F + +D
Sbjct: 954 IMSEGEVFSGRIGTLNTFDASRAEKASVALLVDRQKTALMEETREQFFAELKNDCIVLGA 1013
Query: 832 --TEDD---AYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIK 880
ED KASAW+ Y Q + F SFPWC+ L+E K
Sbjct: 1014 HAAEDRRMLRLQKASAWFMAAYAL-------QPLTGGAFYSFPWCIAHVLLEAK 1060
>gi|451852221|gb|EMD65516.1| hypothetical protein COCSADRAFT_354694 [Cochliobolus sativus ND90Pr]
Length = 1365
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 259/723 (35%), Positives = 405/723 (56%), Gaps = 41/723 (5%)
Query: 146 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI 205
V +TP+ ++ P + SNR++R + D D F+R+ F DE + + R +
Sbjct: 484 VTITPTMMHVATPVMETSNRIIRKYEADADRFIRVRFTDEKSEGQLRNQPNGRAEA---- 539
Query: 206 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNF 265
++ R+ ++NGI++ R +EFLAF +SQ RE+ A+ +A +A +IR +G F
Sbjct: 540 ----VFDRVFRAMKNGIVVAGRYYEFLAFGNSQFRENGAYFYAPTASKSANDIRMSLGEF 595
Query: 266 REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFA 325
IR V+K+AARLGQ FS+++ + V + ++ I+PDV+ + +VF+DG+GK+S A
Sbjct: 596 DHIRTVSKFAARLGQCFSTTR-AMGVTV-KLVIVPDVE----RNGFVFTDGVGKLSPFLA 649
Query: 326 RKVASKCGLKD---NPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDV 381
+ A + GL + +PPS FQ R GG KGV+A DP + ++ +R S K+ + T L++
Sbjct: 650 QMAAQELGLTNAFTDPPSLFQFRLGGSKGVLALDPNLNGNEVHIRRSQYKFRAPHTGLEI 709
Query: 382 LAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSP 440
+ S + + NRQ+I +LS LG+ D +F +KQ + + + +TD + A + L + +
Sbjct: 710 IRSSSFATPYFNRQIILVLSYLGVQDAVFLRKQEDMMNDYSSAMTDEIIALQKLRKNIDI 769
Query: 441 GENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETR 500
+ T + +++ G+ EPF+ +L +RA + L+ K RI I NG ++GC+DET
Sbjct: 770 NQITLTMAAMVLDGFMGSREPFIMSLLALWRACTIKNLKEKARIAIDNGAFLLGCVDETG 829
Query: 501 TLNYGQVFVQISGAGYR--QLHGESSLF---SSSRSRQRFIV-QGLVVVAKNPCLHPGDV 554
TL Q R +L +F S S+ +I+ +G+ ++A+NP LHPGDV
Sbjct: 830 TLKGHLNDPQSRRDATRDEKLATLPEIFLRVSDPESKGHYIIIEGICILARNPSLHPGDV 889
Query: 555 RVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQ-QDPPM 613
RV++AVNVPALHH+ + VVFPQ G R N CSG DLDGD Y V WD +L+P +PPM
Sbjct: 890 RVVRAVNVPALHHLKNVVVFPQTGDRDLANMCSGGDLDGDDYMVLWDRDLVPELINEPPM 949
Query: 614 DYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAE 673
D+TP + +++D + D+ ++F NYI ND+LG IA+AH AD + CL+LAE
Sbjct: 950 DFTPEKPLEIDGPISAMDMSKFFVNYIKNDALGPIAHAHLAQADFNEKCIGDAICLELAE 1009
Query: 674 KFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEK----PDKPTYESQNVIGKLFRAVKDIAP 729
S AVDFPK+G+PAE+ L +++P FMEK P + Y S+ ++G L+ VK I
Sbjct: 1010 LHSRAVDFPKSGIPAEMKRELRPRKWPHFMEKKYLSPHQ-IYNSKKILGLLYDEVKLIDF 1068
Query: 730 HTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEIL 789
F K + ++D D E+ +D A K +YD L LM +GIKTE E
Sbjct: 1069 EPQWENPFDKRIL-EAFDLDQEL------LDKAASLKLSYDEALRRLMAKHGIKTEFEAW 1121
Query: 790 TGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSG-SDTEDDAYAK--ASAWYHV 846
+ ++ + + AE G + AL+ + R + + SD D A +A Y V
Sbjct: 1122 SVFVLVHNHESGDYKFAEEFGRTIAALKHQFRGECRTAAELSDNNDWARLGPFVAAMYTV 1181
Query: 847 TYH 849
T H
Sbjct: 1182 TAH 1184
>gi|260801457|ref|XP_002595612.1| hypothetical protein BRAFLDRAFT_64722 [Branchiostoma floridae]
gi|229280859|gb|EEN51624.1| hypothetical protein BRAFLDRAFT_64722 [Branchiostoma floridae]
Length = 1207
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 286/777 (36%), Positives = 407/777 (52%), Gaps = 90/777 (11%)
Query: 134 ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHST 193
+SL L YV RV VTP+ + F PEI NR+LR + + FLR+SF+DE K+
Sbjct: 278 MSLPATLRYVRRVIVTPTTLLFLQPEIMFENRMLRDYGEEF--FLRVSFLDEGFQKL--- 332
Query: 194 DLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL 253
+G AT + I+ R+ + L+ G+ +G+R + FLA S+SQLR+ W F+
Sbjct: 333 ----QGGIATGLEEEDIFARVRNVLQTGVRVGERYYRFLAASNSQLRQHGVWFFSDDGKN 388
Query: 254 TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLS-VHMDEIEI--IPDVKIEIGKTK 310
TA IR MG+F R A Y AR+GQ FS+++ T++ V + +EI I + +
Sbjct: 389 TAESIRAEMGDFSGCRCPATYLARMGQCFSTTEPTVANVGNNAVEISDITGGYDPVNRKP 448
Query: 311 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMR 370
Y FSDGIGK+S + ARK + + R SM
Sbjct: 449 YCFSDGIGKISKDLARK--------------------------------GEIMQYRSSMN 476
Query: 371 KYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 430
K+ S +++ S FLNRQ+I++LS LG+ D +F++ Q+E + +L +
Sbjct: 477 KFWSLHDVIEICTTSHPGRLFLNRQVITILSQLGVPDIVFQQLQQERLFELADMFLLETS 536
Query: 431 AQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP--N 488
A EAL + + + LL G + EPF MLQ S + E+R + RI IP
Sbjct: 537 AAEALCQRAQMKGLP-YRRLLKMGVQLTTEPFFRSMLQKIYKSSVGEIRRRARIGIPPEY 595
Query: 489 GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 548
GR M+G LDET TL YGQVFVQ + E + R +++G VVV + PC
Sbjct: 596 GRIMLGVLDETGTLEYGQVFVQYT---------EDIANQDGKVR---VLEGDVVVTRTPC 643
Query: 549 LHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI--- 605
LHPGDVR L+A++VPAL+HMVD +VFP KG RPHPNE +G DLDGD +FV W +LI
Sbjct: 644 LHPGDVRKLQAIDVPALYHMVDVIVFPAKGPRPHPNEMTGGDLDGDDFFVTWLPDLIFNG 703
Query: 606 PPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARS 665
P +Q PM + ++ +V I+ + ++ +YI ND LG+IANAH VFAD EP S
Sbjct: 704 PNEQ--PMHFRSPTKREVP-NVTIKHLIDFIVDYIKNDRLGLIANAHLVFADTEPMGIFS 760
Query: 666 EPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVK 725
+ C +LA K S AVDFPKTGV ++ EYPDFM K DK T S+ V+GK++R +
Sbjct: 761 DVCQRLAVKHSDAVDFPKTGVCPDLDKTERPLEYPDFMGKRDKTTRRSERVLGKMYRECQ 820
Query: 726 DIAPHTSCIRLFTKEVARRSY-DPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKT 784
I C ++ K + + D + + ++ A + Y+ +L +LM YGI+T
Sbjct: 821 MI--ENVCTQVERKGTVEQVHPDYGLVIGEHVSYVKKARRSRDRYNDQLRSLMAQYGIET 878
Query: 785 EAEILTGSIMKMSKSFTKRRDAEAI----GMAVRALRKEARAWFKEKSGSDTEDD----- 835
E+E ++G I+K+ K R + I + + LRK R F E+ G + +
Sbjct: 879 ESEAVSGCIVKLHKHMDDRYERYEIERVAKVRIEDLRKRTRQDFFEEFGGEESVELDHPH 938
Query: 836 AYAKASAWYHVTYH-PDYWGCYNQGMNRDHFLSFPWCVYDRLVEIK-KDKTSIGNAF 890
KASAWY VTY PD LSFPW + D L + K T+ AF
Sbjct: 939 VLKKASAWYTVTYSDPD-----------AKLLSFPWVIGDILGILNLKTATTARTAF 984
>gi|391341002|ref|XP_003744822.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
[Metaseiulus occidentalis]
Length = 1356
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 286/796 (35%), Positives = 416/796 (52%), Gaps = 54/796 (6%)
Query: 118 QYRKYMTSRSKPSSPAISLDD------GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFR 171
Q+RK+ + I+ D G+ +++V +TPSR PE + NR+LR
Sbjct: 372 QFRKFRVQEREKKRKGIADCDSERSLQGMAIIYKVFLTPSRTILRPPEEHGENRILRQVS 431
Query: 172 RDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEF 231
RD LR++F D++L+K+ G R + + LR+GI I +R +E+
Sbjct: 432 RDY--MLRVAFRDDNLEKLTHNLTREEG-------RNFLEYFLKGFLRDGIEIENRTYEY 482
Query: 232 LAFSSSQLRESSAWMFAS-RYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLS 290
LA SSSQLR+ W +A +G + IRE MG+F +I+NV K AR G FSS+ ET+
Sbjct: 483 LAASSSQLRDHGCWYYAKDEHGRDSKSIREEMGSFDDIKNVGKKMAREGLCFSSTIETVK 542
Query: 291 VHMDEIEIIPDVK---IEIGKTKYVFSDGIGKVSAEFARKV--ASKCGLKDNPPSAFQIR 345
V DE I D+ E Y FSDGIGK+SAE V A K L+D PSAFQIR
Sbjct: 543 VSEDECTIEEDITGGAHEKSNKPYTFSDGIGKISAELRDDVCEALKDSLRDKKPSAFQIR 602
Query: 346 YGGYKGVVAADPT-SSKKLSLRDSMRKYES-ELTKLDVLAWSKYQPCFLNRQLISLLSTL 403
+ G KG+VA DP ++L LR SM K+ S + +V+ +S+ + LN+Q+I++L L
Sbjct: 603 FRGAKGMVAFDPCLEGRRLVLRKSMVKFASTSSSSFEVIKYSEDRSLTLNKQIITILEQL 662
Query: 404 GIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNIL--KELLICGYKPDAEP 461
G+ EIF + Q + L +A E L + ++ + G +P
Sbjct: 663 GVPAEIFLRYQEANIIDFADALLFENQAHERLTASIKKDPDCVIDFSKFREFGMSVVRDP 722
Query: 462 FLSMMLQTFRASKLLELRTKTRIFIP--NGRSMMGCLDETRTLNYGQVFVQ------ISG 513
+ ML + LR K RI IP GR+++G +DET L YGQV+V+ SG
Sbjct: 723 YFRAMLIELYRYIITNLRDKARISIPWGLGRNLLGVIDETGKLEYGQVYVRYTPREDTSG 782
Query: 514 AGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVV 573
+ + + R +V+G V+V K PC+HPGDVR+L+AV++P L H+VD +V
Sbjct: 783 PDIK-VDNNTDEDGVPRQAGTEVVKGRVLVTKCPCVHPGDVRMLEAVDIPELAHLVDVIV 841
Query: 574 FPQKGMRPHPNECSGSDLDGDIYFVCWDDE-LIPPQQDPPM--DYTPAQSMQLDHDVQIE 630
FPQKG RPHPNE +GSDLDGD Y V WD PM D PA+ + +++E
Sbjct: 842 FPQKGPRPHPNEMAGSDLDGDEYAVIWDQNFFFADGNHRPMIFDDAPAEPSE---SLELE 898
Query: 631 DVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEI 690
D + +I+ND+ G I+NAH ADRE S+ CL+LAEK S+ +DF KTG ++
Sbjct: 899 DYYNFICQFILNDNKGTISNAHLAHADREEDGIFSDKCLRLAEKVSMTLDFAKTGRLTQL 958
Query: 691 PPHLYVKEYPDFMEKPD-KPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPD 749
P VK YPDFM+K D K TY S+ V+GKL+RA + + ++ + R + +
Sbjct: 959 EPSEVVKVYPDFMQKQDHKATYRSEKVLGKLYRASRALE---ITVKQGSSGCEERYVNEN 1015
Query: 750 MEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKR-RDAEA 808
E++G+E+ DA+ Y+++L N+M GI++EAEI+ + ++SK +K D E
Sbjct: 1016 FELEGWEEKKQDALIFVEKYEHRLTNIMGRMGIQSEAEIMVSIVTQVSKYMSKSFHDLEE 1075
Query: 809 IGMAVRALRKEARAWFKEKSGSDTEDDAYAK---ASAWYHVTYHPDYWGCYNQGMNRDHF 865
+ + R KE T D K ASA Y + Y P G F
Sbjct: 1076 LQEQLERQRFFLNLKMKEDFERMTRGDKDQKMLLASAIYMLVYDPP------GGEKLTPF 1129
Query: 866 LSFPWCVYDRLVEIKK 881
PW V+D+L + K
Sbjct: 1130 YGAPWIVFDQLSDCSK 1145
>gi|154290540|ref|XP_001545863.1| hypothetical protein BC1G_15614 [Botryotinia fuckeliana B05.10]
Length = 1173
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 261/807 (32%), Positives = 420/807 (52%), Gaps = 43/807 (5%)
Query: 29 ETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAP 88
+T A RSLD + + LP+E+ +++ + + V +D F + A
Sbjct: 121 KTTQAGLRSLDPSSV-----KVNLPFEVRYQLEVCISREIVNEYNIDEKFINSL----AE 171
Query: 89 VSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQV 148
+S A + L ++ E + S+ L D + S + S + + + V
Sbjct: 172 LSAQDPAKARNLLEYVAE--HYSSKRLYDPSSIFTNSEALSFSALTDIPHYCAFSRKATV 229
Query: 149 TPSRVYFCGPEINVSNRVLRHFRRDIDN--FLRISFIDEDLD-KIHSTDLSPRGSSATDI 205
TP+ + F P + +NRVLRH+ ++ FLR+ F DE + +I+S A I
Sbjct: 230 TPTSILFNSPTVETTNRVLRHYSKENQEGRFLRVQFTDEKFEGRINSC--------ADKI 281
Query: 206 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNF 265
I+TR+ + NGI IGDR +EFLAF +SQ RE+ A+ F L+ +IR+WMG F
Sbjct: 282 RNDAIFTRVFRVISNGIRIGDRHYEFLAFGNSQFRENGAYFFCPSANLSCNDIRQWMGTF 341
Query: 266 REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFA 325
I VAKYAARLGQ FS+++ + +I IPD++ + +Y F+DG+GK+S A
Sbjct: 342 SHINVVAKYAARLGQCFSTTRAIKGLSAPDIVKIPDIE----RGRYCFTDGVGKISPYLA 397
Query: 326 RKVASKCGLK-DNPPSAFQIRYGGYKGVVAADPTSS-KKLSLRDSMRKYESELTKLDVLA 383
+ +AS+ L+ D PSAFQ R GG KG++ P + ++ +R S +K+ + L+++
Sbjct: 398 QMIASELKLRVDLAPSAFQFRLGGCKGILVVSPDAKDNEVHIRKSQQKFTAAYNGLEIIR 457
Query: 384 WSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN 443
S++ LNRQ I++LS LG+ DE+F K + + +++ A L +
Sbjct: 458 CSQFSSATLNRQTITILSALGVKDEVFLKMLSRQLSDYQSAMSNNAIALGLLNRYIDDNH 517
Query: 444 TNI-LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL 502
I + +++ G+ + EPF+ +L +RA + L+ K +I + NG ++GC+DET TL
Sbjct: 518 MTINIAGMILNGFMSEKEPFVLSLLHLWRAWSIKLLKEKAKIIVENGAFVLGCVDETNTL 577
Query: 503 NYGQVFVQISGAGYRQLHGESSLFS---SSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 559
G Y++ + Q +++G+ +V +NP LHPGD+RV++A
Sbjct: 578 RGYTKPTVAYGTTYKETELPQIFIQVPDRENTTQYNVIEGICLVGRNPSLHPGDLRVVQA 637
Query: 560 VNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD-PPMDYTPA 618
VN+PALHH+ D VVFPQ G R P+ CSG DLDGD +FV WD +L P + + PM Y
Sbjct: 638 VNIPALHHLRDVVVFPQSGERDVPSMCSGGDLDGDDFFVIWDKDLQPTEWNCEPMSYAAL 697
Query: 619 QSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIA 678
+ L V + D++++F Y+ NDSL IA+AH AD + + + CL+LAE S A
Sbjct: 698 DPVALKRPVVVTDLQKFFVKYMKNDSLPSIAHAHLAQADYQKQGIKDPKCLKLAELHSKA 757
Query: 679 VDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPT---YESQNVIGKLFRAVKDIAPHTSCIR 735
VD+ KTG PA + +L ++P FMEK +P Y SQ ++G+L+ V+ +
Sbjct: 758 VDYVKTGQPATMQKYLAPPKWPHFMEKIHQPASKQYHSQKILGQLYDKVESVDFVPQYEE 817
Query: 736 LFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMK 795
F K + R+Y+ D + A K YD + ++ IKTE E+ + I+
Sbjct: 818 PFDKRIL-RAYELDNAT------LKAARQTKTKYDTAMRRILAQQDIKTEFEVWSTFILS 870
Query: 796 MSKSFTKRRDAEAIGMAVRALRKEARA 822
K + + E + + AL+ R+
Sbjct: 871 KPKVGSDYKLQEDMAVITGALKDRFRS 897
>gi|367042188|ref|XP_003651474.1| hypothetical protein THITE_2048877 [Thielavia terrestris NRRL 8126]
gi|346998736|gb|AEO65138.1| hypothetical protein THITE_2048877 [Thielavia terrestris NRRL 8126]
Length = 1511
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 289/900 (32%), Positives = 453/900 (50%), Gaps = 77/900 (8%)
Query: 29 ETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFY-RLVD--PY 85
ET S ++ L L+ P I+LP+++ +++ + + + + + +F +L++ P
Sbjct: 404 ETASPWNNDLALL---SPTGKISLPFDVRYQLEVCISHEILCEYNIQRDFLEKLLELGPN 460
Query: 86 RAPVSISCIEHALDKLYHLKECCYEPSRWLTD--QYRKYMTSRSKPSSPAISLDDGLVYV 143
RA + +E+A DK E Y P L D Y T+ + + D V
Sbjct: 461 RARL---ILEYAADK----GETIYNPLELLKDPGALTYYPTT--------LHIPDYCALV 505
Query: 144 HRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD-KIHSTDLSPRGSSA 202
+V VTP+R+YF P + +NR++R +++ D+F+R+ F DE L+ +I A
Sbjct: 506 RKVIVTPTRIYFNTPTVETTNRIVRRYKQVQDHFIRVQFTDELLEGRIR----------A 555
Query: 203 TDITRT-RIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG---LTAAEI 258
++ R +YTR+ + GI +G ++FLAF +SQ+RE+ A+ F G +T I
Sbjct: 556 CEVDRDDELYTRVYRVMMQGIRMGRWHWKFLAFGNSQIRENGAFFFCQAEGYPDITCDTI 615
Query: 259 REWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIG 318
R+WMGNF I VAK AARLGQ FS+++ + I IPDV+ K + F+DG+G
Sbjct: 616 RQWMGNFSHISTVAKLAARLGQCFSTTRLLRCISSPWIVKIPDVE----KGGFCFTDGVG 671
Query: 319 KVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS-SKKLSLRDSMRKYESELT 377
K+S A V+ + PPSAFQ R GG KGV+ P + ++ +R S K+ +E
Sbjct: 672 KISMVLASLVSQDWKIYP-PPSAFQFRMGGCKGVLVTWPDAKGMEVHIRPSQEKFSAEYN 730
Query: 378 KLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE- 436
L+++ S++ LNRQ I +LS LG+ D++F E + DA +TD KA E L
Sbjct: 731 GLEIIRCSQFSCATLNRQTILILSCLGVPDDVFTSMMDEQISNYDAAMTDKDKAVELLSS 790
Query: 437 LMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL 496
+ + + +++ G+ EPF+ +LQ +R+ + L+ K R+ + G ++GC+
Sbjct: 791 YVDENMTSTTIARMVLNGFMHTQEPFVRTLLQLWRSWSIKGLKEKARLIVDQGAFVLGCV 850
Query: 497 DETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRF---IVQGLVVVAKNPCLHPGD 553
DET +L G Q H R R ++ GL +V +NP LHPGD
Sbjct: 851 DETGSLR-GHSKATEGRKKIAQHHLPQIFLQVPDPRDRGAYKVITGLCLVGRNPSLHPGD 909
Query: 554 VRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQ-QDPP 612
+RV++AV++P L H+ D VVFP G R P+ CSG DLDGD +FV WD +LIPP+ PP
Sbjct: 910 IRVVEAVDLPQLRHLRDVVVFPLSGDRDIPSMCSGGDLDGDDFFVIWDPKLIPPEWSHPP 969
Query: 613 MDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLA 672
M+Y+ +S+ + + +F ++ ND L +IA+AH AD E A+ CLQLA
Sbjct: 970 MNYSAPKSLTEPRASTAKSLATFFVLFMKNDRLPLIAHAHLATADYEVEGAKHRKCLQLA 1029
Query: 673 EKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIA-PHT 731
E S AVD+ KTGVPAE L ++YP FMEKP +Y S +V+GKL+ V + ++
Sbjct: 1030 ELHSTAVDYVKTGVPAEWNKKLDPRKYPHFMEKPKSKSYHSTSVLGKLYDMVDRVVFDNS 1089
Query: 732 SCIRL-FTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILT 790
+L F + R + + + +A K YD + +M I+TE E+ T
Sbjct: 1090 DNYKLPFDDRILSRFHPLGSNI------LKEARKIKTQYDIAMRRIMGQLEIRTEFEVWT 1143
Query: 791 GSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHP 850
++ + T + E +G L+K+ R K + D A+A Y VT+
Sbjct: 1144 AFVLSKPRVGTDYKVQEKVGREAAGLKKQFRD-LCLKVAEEHHFDRLEFAAAMYRVTWEE 1202
Query: 851 DYWGCYNQ-----------GMNRDH-----FLSFPWCVYDRL--VEIKKDKTSIGNAFPA 892
Y G+ R +SFPW + L + I ++ S N F A
Sbjct: 1203 TRIALYEARQPHVLPDGTVGLRRISARSMPLISFPWLFPNELGRIAIGAERLSSLNDFVA 1262
>gi|451997457|gb|EMD89922.1| hypothetical protein COCHEDRAFT_1138647 [Cochliobolus heterostrophus
C5]
Length = 1228
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 252/722 (34%), Positives = 396/722 (54%), Gaps = 39/722 (5%)
Query: 146 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI 205
V +TP+ ++ P + SNR++R + D D F+R+ F DE + + R +
Sbjct: 395 VTITPTMMHVATPVMETSNRIIRKYEADADRFIRVRFTDEKNEGQLRNQPNGRAEA---- 450
Query: 206 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNF 265
++ R+ ++NGI++ R +EFLAF +SQ RE+ A+ +A +A +IR +G F
Sbjct: 451 ----VFDRVFRAMKNGIVVAGRYYEFLAFGNSQFRENGAYFYAPTSSKSANDIRISLGEF 506
Query: 266 REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFA 325
I+ V+K+AARLGQ FS+++ + V + E+ PD K ++F+DG+GK+S A
Sbjct: 507 DHIKTVSKFAARLGQCFSTTR-AMGVTV-ELTTTPDKK----HNNFIFTDGVGKLSPFLA 560
Query: 326 RKVASKCGLKD---NPPSAFQIRYGGYKGVVAADPTSSK-KLSLRDSMRKYESELTKLDV 381
+ A + GL + +PPS FQ R GG KGV+A DP + ++ +R S K+ + T L++
Sbjct: 561 QMAAQELGLANAFTDPPSLFQFRLGGSKGVLALDPKLKRNQVKIRPSQYKFRAPYTGLEI 620
Query: 382 LAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSP 440
+ S + + NRQ+I +LS LG+ D +F +KQ + + + D A + L + +
Sbjct: 621 IRSSSFATPYFNRQIILVLSYLGVQDAVFLRKQEDMMNDYSRAMADETTALQKLRKNIDI 680
Query: 441 GENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETR 500
+ T + +++ G+ EPF+ +L +RA + L+ K RI I NG ++GC+DET+
Sbjct: 681 NQTTLTMAAMVLDGFMGSREPFIMSLLALWRACTIKNLKEKARIAIDNGAFLLGCVDETK 740
Query: 501 TL--NYGQVFVQISGAGYRQLHGESSLF---SSSRSRQRFIV-QGLVVVAKNPCLHPGDV 554
L ++ + +L +F S S+ +I+ +G+ +VA+NP LHPGDV
Sbjct: 741 KLKGHFNDPQSRRDATRDEKLATLPEIFLQVSDPNSKGHYIIIEGICIVARNPSLHPGDV 800
Query: 555 RVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQ-QDPPM 613
RV++AVNV LHH+ + VVFPQ G R N CSG DLDGD Y V WD +L+P + +PPM
Sbjct: 801 RVVRAVNVEELHHLKNVVVFPQTGDRDLANMCSGGDLDGDDYMVLWDTDLLPERINEPPM 860
Query: 614 DYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAE 673
D+TP +++++D + D+ +F NYI ND+LG IA+AH AD CL+LAE
Sbjct: 861 DFTPEKAVEIDGPISALDMARFFVNYIKNDALGPIAHAHLAQADFNENGVGDPICLELAE 920
Query: 674 KFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEK---PDKPTYESQNVIGKLFRAVKDIAPH 730
S AVDFPK+G+PAE+ L K++P FMEK Y+S+ ++G L+ VK I
Sbjct: 921 LHSRAVDFPKSGIPAEMKRELRPKKWPHFMEKKYLSQHQIYKSKKILGLLYDEVKLIDFE 980
Query: 731 TSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILT 790
F K + ++D D E+ +D A K +YD L LM +GIKTE E +
Sbjct: 981 PQWENPFDKRIL-EAFDLDQEL------LDKAASLKLSYDEALRRLMAKHGIKTEFEAWS 1033
Query: 791 GSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSG-SDTEDDAYAK--ASAWYHVT 847
++ + + AE G + AL+ + R+ + SD D A +A Y VT
Sbjct: 1034 VFVLVHNHESGDYKFAEEFGRTIAALKHQFRSECSNAAELSDNNDWARLGPFVAAMYTVT 1093
Query: 848 YH 849
H
Sbjct: 1094 AH 1095
>gi|391332207|ref|XP_003740528.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Metaseiulus
occidentalis]
Length = 1437
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 284/805 (35%), Positives = 435/805 (54%), Gaps = 93/805 (11%)
Query: 128 KPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDL 187
+PS S G Y+ R+ +TP+R F PE++ NR+LR+F + D +R+ F D++L
Sbjct: 396 EPSDEEHSHIPGTAYIRRIFITPTRKIFRFPELHTQNRILRNF--EPDYAIRVCFRDDNL 453
Query: 188 DKIHSTDLSPRGSSATDITRTRIYTRILST-LRNGILIGDRKFEFLAFSSSQLRESSAWM 246
+K+ + + T+ ++ L G+ IG R+++F+A SSSQLR+ W+
Sbjct: 454 EKLTFAIFNMK-------TKESFLKEVVGRHLCEGLKIGSRRYDFVAASSSQLRDHGVWV 506
Query: 247 FA-SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSV------HMDEIEII 299
+A ++G A IR WMG+F +I NVA AR+GQ FSS++ET+ + H +I
Sbjct: 507 YARDQFGFEAETIRGWMGDFHDINNVATRMARMGQCFSSTQETVEILPEEELHWRDITHF 566
Query: 300 PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNP----PSAFQIRYGGYKGVVAA 355
V G+ Y FSDG GK+S E ++V C L + PSA QIRY G KG+++
Sbjct: 567 ESVHPLSGR-PYCFSDGCGKISQELMQQVW--CTLPHHAMELHPSALQIRYRGCKGMISL 623
Query: 356 DPT-SSKKLSLRDSMRKYE-SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKK 413
D T +KL LR+SM K++ + KL+V+ WS FLNR LI++L GI ++F +
Sbjct: 624 DTTLPGRKLVLRESMIKFQCTSPRKLEVIKWSAPMNMFLNRSLIAILEHHGIRTDVFLRL 683
Query: 414 QREAVRQL-DAILTDPLKAQEALELMSPGENTNI-LKELLICGYKPDAEPFLSMMLQTFR 471
Q E + Q+ D+++ + AL +++ T + L G++ +PF+ ML
Sbjct: 684 QLEMIMQVADSLVCEA----SALRVLTSFVKTPVPFAGLAEVGWELVRDPFIIQMLYDLL 739
Query: 472 ASKLLELRTKTRIFIP--NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSS 529
+ L+ L+ K + IP GR+M+G +DET L+YGQVF+Q + Y + S++
Sbjct: 740 KNALVNLKVKANVAIPVNEGRNMLGVVDETGILDYGQVFIQFTEMPYTDV-------SNA 792
Query: 530 RSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGS 589
R R IV+G VV+ K PC+HPGDVR L+AV+VP L H+ DCVVFP +G PHP E SGS
Sbjct: 793 RVR---IVEGDVVITKCPCMHPGDVRRLRAVDVPQLRHIRDCVVFPSRGKAPHPFEMSGS 849
Query: 590 DLDGDIYFVCWDDELIPPQQDPPMDY--TPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGI 647
DLDGD Y W +ELI + P Y P H+ D +F NYI ND +GI
Sbjct: 850 DLDGDEYVCIWSEELIFERNAMPYVYDDKPFGVNPFKHN---SDETNFFCNYIGNDIIGI 906
Query: 648 IANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPD 707
I+NAH +AD+ SE CL L K S A+DF KTG A++ P+ +++PDFMEK D
Sbjct: 907 ISNAHLAWADQA--GIASEKCLALVGKASKALDFAKTGDAADLYPNEKPEKFPDFMEKGD 964
Query: 708 -KPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHK 766
K +Y+SQ +G L+R V+ I + +++ + P +EV G++ + A
Sbjct: 965 HKHSYQSQKALGILYRTVRQIMAVNDTM------LSKGNIAP-LEVPGWQMFRERAQAAL 1017
Query: 767 GNYDYKLGNLMDYYGIKTEAEILTGSIMKMS-----KSFTKRRDAEAIGMAVR----ALR 817
Y+ +L ++M+ +G+ +E E+ +G I ++ + + R + I + + L
Sbjct: 1018 QRYNERLAHIMEQHGVVSEGEVFSGVIGTVNTFDAVSTSSFRAEKANIALLIERQKCVLM 1077
Query: 818 KEARAWFKEK-------SGSDTEDDAYA----KASAWYHVTYHPDYWGCYNQGMNRDHFL 866
+E + F+ + G+ TE+D + KASAWY VTY D +
Sbjct: 1078 EETKQQFQCEFEEDCALFGARTEEDRHMIRIQKASAWYMVTYTED-----------AAYF 1126
Query: 867 SFPWCVYDRLVEIK---KDKTSIGN 888
SFPW + L+E K +D +S GN
Sbjct: 1127 SFPWSIGHALLEAKRWIRDFSSHGN 1151
>gi|322705481|gb|EFY97066.1| suppressor of ascus dominance [Metarhizium anisopliae ARSEF 23]
Length = 1315
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 265/821 (32%), Positives = 426/821 (51%), Gaps = 56/821 (6%)
Query: 43 IVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLY 102
++ P I LP+E+ +++ + + G + + +F + ++ + + +E+ +D+
Sbjct: 360 LLSMPQKIHLPFEVRYQLEVCISRGVLNEYAIGIDFLQELNNLQTMDATHRLEYLVDQ-- 417
Query: 103 HLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINV 162
E ++P + + + PA + YV + +T + + F P +
Sbjct: 418 --NEILFDP-------MKLFSMEDATAFVPAARIPHYCTYVRKASITATTIRFNSPTVET 468
Query: 163 SNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGI 222
SNRV+R + D FLR+ F++E ++L G T +I+ R+ L GI
Sbjct: 469 SNRVVRKYSHLQDRFLRVQFVEE-------SELVRLGK--TKYKNDKIWKRVERALSQGI 519
Query: 223 LIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSF 282
IGDR++EFLAF SSQLR+SSA+ F L+ +IR WMG F I+ VAKYAAR+GQ F
Sbjct: 520 RIGDRQYEFLAFGSSQLRQSSAYFFCPTGHLSCEDIRAWMGQFDHIKCVAKYAARIGQCF 579
Query: 283 SSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD-NPPSA 341
S++++ + + +I+ I D++ + F+DG+G +S ++ + + L + P+A
Sbjct: 580 STTRDIKGIWVPDIKYIDDIQ----RNDQCFTDGVGLISKFLSQLIMEEMTLDIFDKPTA 635
Query: 342 FQIRYGGYKGVVAADPTSSK-KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLL 400
FQ R GG KGV+A P + ++ +R+S K++S+ L+++ + LNRQ I++L
Sbjct: 636 FQFRMGGCKGVLAVWPQAQGMEVHIRNSQEKFKSDFQGLEIVRCAARSTATLNRQTITIL 695
Query: 401 STLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDA 459
+LG+ ++F +E + + D +A + L + + +++ +L ELL G+ D
Sbjct: 696 ESLGVPKKMFMALLKEQISWYENAAKDTSEAIKLLTKFVDENQSSLVLAELLKAGFMTDN 755
Query: 460 --EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFV-----QIS 512
EPF + + LR KTRI +P ++GC+DE+ +L + Q++
Sbjct: 756 VREPFTLNTFNLWLSWSFRLLREKTRIHVPKSAFVLGCVDESGSLRGHSIETEGCSDQLN 815
Query: 513 GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCV 572
Q+ + L S + I+QG +V +NP LHPGD+RV++AVN P L H+ D +
Sbjct: 816 ENKLPQIFLQ--LTDPSHEGKTNIIQGKCIVGRNPSLHPGDIRVVQAVNNPKLRHLKDVI 873
Query: 573 VFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD-PPMDYTPAQSMQLDHDVQIED 631
VFP KG RP P SG DLDGD +F+ WDD LIP + + PMDY QLD DV ++D
Sbjct: 874 VFPSKGDRPVPAMLSGGDLDGDDFFIIWDDRLIPKEWNHKPMDYQAPNPRQLDRDVTVDD 933
Query: 632 VEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIP 691
+ E+F NY+ ND+LG+IA AH FAD K S+ CL+LAE S AVD+ KTG PAE
Sbjct: 934 LREFFVNYMKNDNLGLIAVAHLAFADMHGPK--SQICLRLAELHSQAVDYAKTGEPAEFG 991
Query: 692 PHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIR-----LFTKEVARRSY 746
+ + +P FMEK K TY S +G LF ++A HT R F K + R Y
Sbjct: 992 HKMQPERWPHFMEK--KSTYRSNKALGALF---DEVAKHTFQFRPEWEHPFDKRILER-Y 1045
Query: 747 DPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDA 806
+ DM + A K YD + LM Y ++TE E+ TG +M + + +
Sbjct: 1046 EFDMST------LTTAREIKAQYDSAIRRLMVQYHVETEYELYTGWVMSNTSISSNYKRQ 1099
Query: 807 EAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVT 847
E +G+ +++ R +G +A Y VT
Sbjct: 1100 EDLGLEFDVVKQRFREQCCNVAGGSEAPQLDKFVAAMYKVT 1140
>gi|425783248|gb|EKV21105.1| RNA-directed RNA polymerase (Sad-1), putative [Penicillium digitatum
Pd1]
Length = 1347
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 274/842 (32%), Positives = 443/842 (52%), Gaps = 55/842 (6%)
Query: 12 FKENFAYYKESEDR------FVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQ 65
F + +++ E DR ++ + S +++ L+ +G + I LP+++ +++ + +
Sbjct: 336 FIRDGSHFVEKTDRPVPVWHWIDFSESKSNKASALLQDLGDQNYIHLPFKVRYQLEVCLS 395
Query: 66 NGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTS 125
G ++ + F V + +E + K+ +P ++ K +T
Sbjct: 396 QGYLSEFSMSREFVEKVKDLGDDQATRLLEFVATE----KKQYLDPMEIFDLKFFKRVTD 451
Query: 126 RSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF--RRDIDNFLRISFI 183
PS ++H +VTP+ +Y+ P +++SNRV+R + + FLR+ F
Sbjct: 452 SKIPSY--------CCFMHTARVTPTTIYYNTPTVDISNRVVREWSTKSAPGRFLRVRFT 503
Query: 184 DEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS 243
DE + R +++ + IYTR+ TL NGI IGDR +EFLAF +SQ RE
Sbjct: 504 DERTEG--------RINASLGDSNDEIYTRVKRTLANGISIGDRHYEFLAFGNSQFREHG 555
Query: 244 AWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 303
A+ FA G++AA IR WMG F IRNVAKYAARLGQ FS+++ + ++ DV
Sbjct: 556 AYFFAPDAGVSAATIRAWMGQFNHIRNVAKYAARLGQCFSTTRAFTGSSV-QVATCNDVV 614
Query: 304 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIRYGGYKG--VVAADPT 358
+ + FSDG+GKVS A+ V S+ +K PSAFQ R GG KG VV+ DP
Sbjct: 615 ----RNGFTFSDGVGKVSKFLAQMVTSQHNIKTLTGESPSAFQFRLGGAKGMLVVSPDPM 670
Query: 359 SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAV 418
+++ +R S +K+E+ L+++ WS+Y LNRQLI +LS LGI D++F K +
Sbjct: 671 -PQEVHIRPSQQKFETTQAGLEIIRWSQYSLATLNRQLILVLSALGIPDKVFHSKLNSML 729
Query: 419 RQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLE 477
++ + KA L+ + P + T IL +++ G++ + EPF + ML+ +++ L
Sbjct: 730 GSFHRVMCNDSKAINLLQKYIDPNQTTLILAQMVSDGFRQNEEPFANTMLELWKSWHLKH 789
Query: 478 LRTKTRIFIPNGRSMMGCLDETRTL-NYGQVFVQISGAGYRQ-LHGESSLFSS----SRS 531
L+ K +I I G +++G +DET L Y + + GA Y Q L +F +
Sbjct: 790 LKEKAKIAIDQGANLLGVMDETGVLKGYFKNTLPRRGASYAQKLAALPEIFVQICRLEGN 849
Query: 532 RQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDL 591
+ +++GL ++A+NP LHPGD+RV++AVN P L + D VV PQ G + + CSG DL
Sbjct: 850 GEYEVIEGLCILARNPSLHPGDIRVVRAVNRPELKGLRDVVVLPQTGDQDIASMCSGGDL 909
Query: 592 DGDIYFVCWDDELIPPQQ-DPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIAN 650
DGD Y + WD +LIP + MDY +++ LDHDV ++++ +F Y+ ND L IA+
Sbjct: 910 DGDDYLIIWDPDLIPTRWFVECMDYKGSKAPDLDHDVTVDEITSFFVTYMKNDCLPRIAH 969
Query: 651 AHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDK-- 708
AH +ADR PR E C++LA+ S AVD+ K+G A + L K +P FMEK K
Sbjct: 970 AHLAWADRLPRGVWEEKCIRLAQLHSDAVDYNKSGAHARMARSLDPKFWPHFMEKRFKRP 1029
Query: 709 -PTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKG 767
Y+S ++G+L+ AV + P+ + K R + + E +I+ A K
Sbjct: 1030 SSIYKSTKILGQLYDAV--VTPN--FVPKLGKPFDSRILESPL-ASASETYIEYARELKA 1084
Query: 768 NYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEK 827
+D + +M Y I TE E+ + +++ + E +G V LR+ R +K
Sbjct: 1085 EFDMNMRQIMAQYEINTEFEVWSTFVLRHGFVIRDYKMQEDLGRIVGTLRRGFRHQCYDK 1144
Query: 828 SG 829
G
Sbjct: 1145 VG 1146
>gi|336463319|gb|EGO51559.1| suppressor of ascus dominance [Neurospora tetrasperma FGSC 2508]
gi|350297473|gb|EGZ78450.1| suppressor of ascus dominance [Neurospora tetrasperma FGSC 2509]
Length = 1633
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 288/926 (31%), Positives = 445/926 (48%), Gaps = 136/926 (14%)
Query: 23 EDRFVLETGSAYSRSL--DLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYR 80
+DR+ E SRS D + PP I+LP+++ +++ + + G + +D F
Sbjct: 418 DDRYGHEIQQVSSRSWGNDFSLLAAPPR-ISLPFDVRYQLEVCISQGIINEHNIDRPFLE 476
Query: 81 LV-------DPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQ--YRKYMTSRSKPSS 131
+ + + + +E+ D+ + + ++P D + TS P+
Sbjct: 477 KLMEFCDNDNSFGKDRARLILEYVADE--YAGKRIFDPMELFKDNAALTYFPTSFMIPNH 534
Query: 132 PAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIH 191
A +V RV +TP+R+YF P + +NRV+R +R D F+RI F DE L+
Sbjct: 535 CA--------WVRRVTITPTRIYFSTPCVEPTNRVIRQWRHAQDYFIRIQFTDEVLE--- 583
Query: 192 STDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY 251
G + ++ R+ L G+ +G ++FLAF +SQ+RE+ A+MF +
Sbjct: 584 -------GRIKSGEAELPLFLRVYRVLEKGVAMGPWHWKFLAFGNSQIREAGAFMFCEQS 636
Query: 252 GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY 311
LT +R WMG F I+ +AKYAARLGQ FS+++ + I IPDV+ K +
Sbjct: 637 NLTCDMMRAWMGRFSHIKVIAKYAARLGQCFSTTRLVPGIPAPRIITIPDVE----KDGF 692
Query: 312 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMR 370
F+DGIGK+S A+ VA + D PPSA+Q R GG KGV+ P ++ +R S
Sbjct: 693 CFTDGIGKISPLLAKIVAHDWSI-DPPPSAYQFRMGGCKGVLVTWPDVKGMEVHIRKSQE 751
Query: 371 KYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 430
K+ +E L+V+ S++ LNRQ+I++LS+LG+ D++F + + +A + D K
Sbjct: 752 KFVAEFNGLEVVRCSQFSTATLNRQIIAVLSSLGVPDQVFVDMMEQQLSDFNAAMEDKQK 811
Query: 431 AQEALE-LMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 489
A L+ + T I+ E+L G+ EPF+ +LQ +R+ + L+ K R+ +
Sbjct: 812 ATAILKTFIDENHMTPIIAEMLAYGFMESQEPFVRTLLQLWRSWSIKTLKEKARLNVEKS 871
Query: 490 RSMMGCLDETRTLN----------------YGQVFVQIS---GAGYRQLHGESSLFSSSR 530
++GC+DET TL Q+F+QI GYR
Sbjct: 872 AFVLGCVDETGTLKGHMKVTEDWKDVPSEKLPQIFLQIPDDVNGGYR------------- 918
Query: 531 SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSD 590
++ G VV +NP LHPGD+RV++AV+VPAL H+ D VVFP G R P+ CSG D
Sbjct: 919 -----VITGTCVVGRNPSLHPGDIRVVEAVDVPALRHLRDVVVFPLAGDRDVPSMCSGGD 973
Query: 591 LDGDIYFVCWDDELIPPQQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIA 649
LDGD +FV WD LIP ++ PPM P +L + + ++ +F Y+ ++L +IA
Sbjct: 974 LDGDDFFVIWDPLLIPKERSHPPMTSEPIAGKELATEPTVNNLITFFVLYMKYNNLPLIA 1033
Query: 650 NAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKP 709
+AH AD E +S CL+LA S+AVD+ KTGV AE P L K +P FMEK ++
Sbjct: 1034 HAHLATADAEVEGVKSPKCLELASLHSMAVDYVKTGVAAEFPRRLDPKTWPHFMEK-NRH 1092
Query: 710 TYESQNVIGKLFRAVK----------------DIAPHTSC--IRLFTKEVARRSYDPDME 751
TY S +GKL+ VK I HT C +R T ARR
Sbjct: 1093 TYHSVTALGKLYDMVKRETFDMKENYQLPFDNRILKHTKCRALRDETLTKARRI------ 1146
Query: 752 VDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGM 811
K YD + +M I TE E+ T +M + + + + +G
Sbjct: 1147 --------------KSQYDTAMRRVMCQLEITTEFEVWTAFVMSKPRVGSDYKLQDNVGR 1192
Query: 812 AVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYH---------------PD-YWGC 855
L++ FK++ ++ D + SA Y VTY PD G
Sbjct: 1193 ESSVLKQH----FKDQCKNEAGGDLLSFVSAMYRVTYEEVRIALFEAKQPHVRPDGRLGT 1248
Query: 856 YNQGMNRDHFLSFPWCVYDRLVEIKK 881
+SFPW +D+L E+ +
Sbjct: 1249 RKITPKTMPLVSFPWLFWDKLGELAR 1274
>gi|310791166|gb|EFQ26695.1| RNA dependent RNA polymerase [Glomerella graminicola M1.001]
Length = 1269
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 255/748 (34%), Positives = 392/748 (52%), Gaps = 44/748 (5%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD-KIHSTDLSPRGSS 201
+ ++ VTPS ++FC P + SNRVLR + D FLR+ F DE K+++
Sbjct: 442 IRKITVTPSTMHFCSPNVESSNRVLRKYNSYQDRFLRVQFTDELYKGKVYNN-------- 493
Query: 202 ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 261
T I+ RI L+ GI IG+R +EFLAF +SQ+RE + + F T +IR+W
Sbjct: 494 ----AGTEIFNRIYRVLKQGIKIGNRVYEFLAFGNSQIRECAVYFFCPTAYTTCDDIRQW 549
Query: 262 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 321
MG F IRNVAKYAAR+GQ FS+++E V + I D++ + Y FSDG+GK+S
Sbjct: 550 MGEFSHIRNVAKYAARIGQCFSTTREIRGVTVPRIVQAEDIE----RGGYCFSDGVGKIS 605
Query: 322 AEFARKVASKCGLKD-NPPSAFQIRYGGYKGVVAADPTSSK-KLSLRDSMRKYESELTKL 379
A V ++ G + PSAFQ R GG KG++A P + ++ +R S K++++ L
Sbjct: 606 KLLAEMVVNEMGQESVGIPSAFQFRMGGCKGMLAVWPDAKGLEVHIRPSQEKFKAQFNGL 665
Query: 380 DVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMS 439
+++ +++Y LNRQ I++L+TLG+ E + ++ V+ + + D + A L
Sbjct: 666 EIIRFAQYSVATLNRQTITILATLGVESEPILQLAKQQVQNYEKAMRDRVAAAGLLGRYV 725
Query: 440 PGENTNILKELLICGYKPDAE---PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL 496
T++ + L+C D E PF+ +L +R + L+ K R+ + ++GCL
Sbjct: 726 DENMTSLTIKDLVCWGFMDTEVQEPFVLTILNLWRIWSVKLLKEKARVIVEQSAFLLGCL 785
Query: 497 DETRTLNYGQVFVQISGAGYRQLHGESSLF---SSSRSRQRFIVQGLVVVAKNPCLHPGD 553
DET TL + G R + +F + + + V G+ +V +NP LHPGD
Sbjct: 786 DETGTLRGHSKATE--GRETRNIEDIPQIFLQIPNPDDGKFYCVTGVCIVGRNPSLHPGD 843
Query: 554 VRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQ-QDPP 612
+RV++AV+VPAL H+ + VVFP G R P+ SG DLDGD +FV W+ LIPPQ PP
Sbjct: 844 IRVVEAVDVPALRHLKNVVVFPSIGDRDVPSMLSGGDLDGDDFFVIWNPALIPPQWHQPP 903
Query: 613 MDYTPAQSMQLDHD-VQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQL 671
MDY +++ L V++ D+ +F Y+ ND L ++A AH AD+ AR C++L
Sbjct: 904 MDYVASKAPVLKRGFVKVSDLRTFFVRYMQNDCLALVAVAHLAQADQSQAGARDGKCIKL 963
Query: 672 AEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHT 731
AE S AVD+ KT PA+ PP+L K +P FM + K TY+S + IG+++ ++D A
Sbjct: 964 AELHSKAVDYVKTADPADFPPYLQPKRWPHFMNR--KNTYKSLSPIGQIYDMIQDQALDP 1021
Query: 732 SCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTG 791
+ F + R D D + A K YD + LM Y +KTE E TG
Sbjct: 1022 LYEKKFDNRILNRFTLTD-------DLLQKARKVKRQYDTSMRRLMSYRDVKTEFEAWTG 1074
Query: 792 SIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPD 851
++ + + + E IG AL++ R ++GS DD +A Y VT
Sbjct: 1075 FVLSRPRVGSDYKQQEDIGRESAALKQRFREICYNEAGSRNYDDFAPFVAAMYKVTEEQV 1134
Query: 852 YWGCYNQGMNRDH------FLSFPWCVY 873
+ + +H +SFPW +
Sbjct: 1135 NAALAKEYEDEEHKRQSMPLISFPWIFH 1162
>gi|345566166|gb|EGX49112.1| hypothetical protein AOL_s00079g66 [Arthrobotrys oligospora ATCC
24927]
Length = 1475
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 292/882 (33%), Positives = 449/882 (50%), Gaps = 113/882 (12%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYR---LVDPYRAPVSISCIEHALD--KLYH-- 103
+L Y + +++ + GCV+ + F ++ +++ +E +D K Y+
Sbjct: 525 SLTYPLRYQLEACISQGCVSEYNVSKEFIDELIAIEEREPNLAVRILETVVDSGKRYYDP 584
Query: 104 LKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVS 163
++ +P R T Q KY V + +TP+ +Y+ P + S
Sbjct: 585 MEILDIKPERRSTAQIPKY-----------------CVETRKATITPTMIYYANPVVETS 627
Query: 164 NRVLRHFRRDIDNFLRISFIDEDL-DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGI 222
RV+RHF D FLR+ F DE L KI +T+L T ++TR+ L NGI
Sbjct: 628 YRVIRHFFNHKDRFLRVQFTDEKLHGKISATELD---------TSHELFTRVSKALNNGI 678
Query: 223 LIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSF 282
IGDR F+FLAF +SQLR+ A+ FA LT +IR+WMG F +I+ VAK++AR GQ F
Sbjct: 679 KIGDRHFQFLAFGNSQLRQHGAYFFADGPDLTCDDIRKWMGKFEKIKVVAKFSARYGQCF 738
Query: 283 SSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL-KDNP-PS 340
S+++ + +I IPDV+ + + F+DG G +S+ A+ +A++ + +++P P
Sbjct: 739 STTRAMNGFKVKDI-TIPDVE----RNGFCFTDGCGTISSSAAQLIAAEYRIPRESPLPC 793
Query: 341 AFQIRYGGYKGVVAADPTSSK--------KLSLRDSMRKYESELTKLDVLAWSKYQPCFL 392
AFQ R GG KGV+ DP K ++ +R S RK++++ L+++ +S + L
Sbjct: 794 AFQFRLGGCKGVLVVDPNIKKVETGEAGFQVCIRPSQRKFDADHNSLEIIRYSDFSVATL 853
Query: 393 NRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELL 451
NRQLI +LS LG+ D +F K +R L+ + D A++ L + + T + LL
Sbjct: 854 NRQLIQVLSDLGLEDTVFLDKLHSQLRDLNLAMEDKEAARKILMKNVDANGGTIQIAGLL 913
Query: 452 ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI 511
G+ EPF+ +L +RA + L+ K RI I NG ++G +DET L G +
Sbjct: 914 SDGFMTSQEPFVQCLLHLWRAWSIKMLKEKARITIENGCFLLGVVDETGILK-GHFDKEH 972
Query: 512 SGAGYRQLHGES-----------SLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAV 560
+ +GE+ + I+QG ++A+NP LHPGD+RV+ AV
Sbjct: 973 EELKKSRANGEALRCDLLPEIFVQIPDYENKGHYKIIQGPCLLARNPSLHPGDLRVVNAV 1032
Query: 561 NVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQ-QDPPMDYTPAQ 619
+ P L H+ + VVFPQ G +P N CSG DLDGD Y V WD IPP+ + PMDYTP +
Sbjct: 1033 DCPDLRHLRNVVVFPQTGDKPIANMCSGGDLDGDDYIVIWDGTFIPPKVNESPMDYTPPK 1092
Query: 620 SMQLDH-DVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIA 678
++ +V +ED+ ++F Y+ ND+LG IANAH ADR P S+ C++LA S+A
Sbjct: 1093 PVEAKSGNVTLEDIRKFFVRYMKNDTLGTIANAHLATADRLPAGVFSQECVELAGLHSLA 1152
Query: 679 VDFPKTGVPAEIPPHLYVKEYPDFMEK---PDKPTYESQNVIGKLFRAVKDIAPHTSCIR 735
VDFPKTGV A++ L ++++P F EK K Y S ++G+L+ AV+ +A
Sbjct: 1153 VDFPKTGVDAKMRKELRIRDWPHFFEKHIGTKKRFYVSSEILGQLYDAVEKVA------- 1205
Query: 736 LFTKEVARRSYDPDMEVDG---------FEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEA 786
+E A+ D++ DG E H++ A K YD + LM IKTE
Sbjct: 1206 FRPEECAK-----DLKFDGRILTAFNDINEKHLNMARDLKAKYDAAIRRLMAQNDIKTEF 1260
Query: 787 EI---------LTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAY 837
EI L GS K + + RD G+ R +E R + TED+
Sbjct: 1261 EIWSTFALSHALIGSDYKFHEDMKEMRD----GLMDR-FDQEIRVEIR------TEDEYT 1309
Query: 838 AK--ASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLV 877
+A Y +T + +Y G +SFPW V+D L+
Sbjct: 1310 LGRFVAAIYQIT-NEEYTRAVENGEPMP-LISFPW-VHDELL 1348
>gi|322701339|gb|EFY93089.1| suppressor of ascus dominance [Metarhizium acridum CQMa 102]
Length = 1296
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 258/796 (32%), Positives = 418/796 (52%), Gaps = 58/796 (7%)
Query: 43 IVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLY 102
++ P I LP+E+ +++ + + G + + +F + ++ R + +E+ +D+
Sbjct: 327 LLSMPQKIHLPFEVRYQLEVCISRGVLNEYTIGIDFLQELNNLRTMDATHRLEYLVDQ-- 384
Query: 103 HLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINV 162
E ++P + + + PA + YV + +TP+ + F P +
Sbjct: 385 --NEILFDP-------MKLFSMEDATAFVPAARIPHYCTYVRKASITPTTIRFNSPTVET 435
Query: 163 SNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGI 222
SNRV+R + D FLR+ F++E ++L G T +++ R+ L GI
Sbjct: 436 SNRVVRKYSHVQDRFLRVQFVEE-------SELVRLGK--TKYNNVKVWKRVERALSQGI 486
Query: 223 LIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSF 282
IGDR++EFLAF SSQLR+SSA+ F L+ +IR WMG F I+ VAKYAARLGQ F
Sbjct: 487 RIGDRQYEFLAFGSSQLRQSSAYFFCPTDHLSCEDIRAWMGQFDHIKCVAKYAARLGQCF 546
Query: 283 SSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD-NPPSA 341
S++++ + + +I+ I D++ + F+DG+G +S ++ + + L + P+A
Sbjct: 547 STTRDIKGIWVPDIKYIDDIQ----RNGQCFTDGVGLISKFLSQLIMEEMTLDIFDKPTA 602
Query: 342 FQIRYGGYKGVVAADPTSSK-KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLL 400
FQ R GG KGV+A P + ++ +R S K++S L+++ + LNRQ I++L
Sbjct: 603 FQFRMGGCKGVLAVWPQAQGMEVHIRKSQEKFKSNFQALEIVRCAARSTATLNRQTITIL 662
Query: 401 STLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPD- 458
+LG+ +IF + +E + + D +A + L + + +++ +L ELL G+K D
Sbjct: 663 ESLGVRKKIFMELLKEQISWYENATKDTSEAIKLLTKFVDENQSSLVLAELLKAGFKTDN 722
Query: 459 -AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR 517
E F + + + L+ KTRI +P ++GC+DE+ +L + S
Sbjct: 723 IQESFTLNIFNLWLSWSFRLLKEKTRIHVPKSAFVLGCVDESGSLRGHSTETEGSSD--- 779
Query: 518 QLHGES------SLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDC 571
QL+ + L S + +QG +V +NP LHPGD+RV++AVN P L H+ D
Sbjct: 780 QLNEKQLPQIFLQLTDPSHEGKTNTIQGKCIVGRNPSLHPGDIRVVQAVNNPKLRHLKDV 839
Query: 572 VVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD-PPMDYTPAQSMQLDHDVQIE 630
+VFP KG RP P SG DLDGD +F+ WDD LIP + + PMDY QLD DV ++
Sbjct: 840 IVFPSKGDRPVPAMLSGGDLDGDDFFIIWDDRLIPEEWNHKPMDYEAPSPRQLDRDVTVD 899
Query: 631 DVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEI 690
D+ E+F NY+ ND+LG+IA AH FAD +S+ CL+LAE S AVD+ KTG PAE
Sbjct: 900 DLREFFVNYMKNDNLGLIAVAHLAFADM--YGPKSQICLRLAELHSQAVDYAKTGEPAEF 957
Query: 691 PPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIR-----LFTKEVARRS 745
+ + +P FMEK K TY S+ +G L+ ++A HT R F + + R
Sbjct: 958 GYKMQPERWPHFMEK--KSTYRSKKALGALY---DEVAKHTFQFRPEWGHSFDERILER- 1011
Query: 746 YDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD 805
Y+ D + A K YD + LM Y ++TE E+ TG +M + + +
Sbjct: 1012 YEFDKST------LTAAREIKAQYDSAIRRLMVQYHVETEYELYTGWVMSNTSISSNYKR 1065
Query: 806 AEAIGMAVRALRKEAR 821
E +G+ +++ R
Sbjct: 1066 QEDLGLEFDVVKQRFR 1081
>gi|13641451|gb|AAK31733.1| suppressor of ascus dominance [Neurospora crassa]
Length = 1638
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 285/929 (30%), Positives = 443/929 (47%), Gaps = 142/929 (15%)
Query: 23 EDRFVLETGSAYSRSL--DLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYR 80
+DR+ + SRS D + PP I+LP+++ +++ + + G + +D F
Sbjct: 414 DDRYGHDIQQVSSRSWSNDFSLLAAPPR-ISLPFDVRYQLEVCISQGIINEHNIDRPFLE 472
Query: 81 LV------------DPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSK 128
+ D R + E+A +++ E ++ +
Sbjct: 473 KLMEFCDNDNSFGKDRARLILEYVADEYAGKRIFDPMEL-----------FKDHAALAYF 521
Query: 129 PSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD 188
P+S + + +V RV +TP+R+YF P + +NRV+R ++ D F+RI F DE L+
Sbjct: 522 PTS--FMIPNHCAWVRRVTITPTRIYFSTPCVEPTNRVIRQWKHAQDYFIRIQFTDEVLE 579
Query: 189 KIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA 248
G + ++ R+ L G+ +G ++FLAF +SQ+RE+ A+MF
Sbjct: 580 ----------GRIKSGEAELPLFLRVYRVLEKGVAMGPWHWKFLAFGNSQIREAGAFMFC 629
Query: 249 SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK 308
+ LT +R WMG F I+ +AKYAARLGQ FS+++ + I IPDV+ K
Sbjct: 630 EQSNLTGDMMRAWMGRFSHIKVIAKYAARLGQCFSTTRLVPGIPAPRIVTIPDVE----K 685
Query: 309 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRD 367
+ F+DG+GK+S A+ VA + D PPSA+Q R GG KGV+ P ++ +R
Sbjct: 686 DGFCFTDGVGKISPLLAKIVAHDWSI-DPPPSAYQFRMGGCKGVLVTWPDVKGMEVHIRK 744
Query: 368 SMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 427
S K+ +E L+V+ S++ LNRQ+I++LS+LG+ D++F + + +A + D
Sbjct: 745 SQEKFVAEFNGLEVVRCSQFSTATLNRQIIAVLSSLGVPDQVFVDMMEQQLSDFNAAMED 804
Query: 428 PLKAQEALE-LMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 486
KA L+ + T I+ E+L G+ EPF+ +LQ +R+ + L+ K R+ +
Sbjct: 805 KQKATAILKTFIDENHMTPIIAEMLAYGFMGSQEPFVRTLLQLWRSWSIKTLKEKARLNV 864
Query: 487 PNGRSMMGCLDETRTLN----------------YGQVFVQIS---GAGYRQLHGESSLFS 527
++GC+DET TL Q+F+QI GYR
Sbjct: 865 EKSAFVLGCVDETGTLKGHMKVIEDWKDVSSEKLPQIFLQIPDDVNGGYR---------- 914
Query: 528 SSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECS 587
++ G VV +NP LHPGD+RV++AV+VPAL H+ D VVFP G R P+ CS
Sbjct: 915 --------VITGTCVVGRNPSLHPGDIRVVEAVDVPALRHLRDVVVFPLTGDRDVPSMCS 966
Query: 588 GSDLDGDIYFVCWDDELIPPQQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLG 646
G DLDGD +FV WD LIP ++ PPM P +L + + ++ +F Y+ ++L
Sbjct: 967 GGDLDGDDFFVIWDPLLIPKERSHPPMISEPIAGKELATEPTVNNLITFFVLYMKYNNLP 1026
Query: 647 IIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKP 706
+IA+AH AD E +S CL+LA S+AVD+ KTGV AE P L K +P FMEK
Sbjct: 1027 LIAHAHLATADAEVEGVKSPKCLELASLHSMAVDYVKTGVAAEFPRRLDPKTWPHFMEK- 1085
Query: 707 DKPTYESQNVIGKLFRAVK----------------DIAPHTSC--IRLFTKEVARRSYDP 748
++ TY S +GKL+ VK I HT C +R T ARR
Sbjct: 1086 NRHTYHSVTALGKLYDMVKRETFDMKENYQLPFDNRILKHTKCRALRDGTLAKARRI--- 1142
Query: 749 DMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEA 808
K YD + +M I TE E+ T +M + + + +
Sbjct: 1143 -----------------KSQYDTAMRRVMCQLEIATEFEVWTAFVMSKPRVGSDYKLQDN 1185
Query: 809 IGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYH---------------PD-Y 852
+G AL++ FK++ + D + SA Y VTY PD
Sbjct: 1186 VGRESSALKQH----FKDQCKKEAGGDLLSFVSAMYRVTYEEVRIALFEAKQPHVRPDGR 1241
Query: 853 WGCYNQGMNRDHFLSFPWCVYDRLVEIKK 881
G +SFPW +D+L E+ +
Sbjct: 1242 LGTRKITPKTMPLVSFPWLFWDKLGELAR 1270
>gi|226490831|ref|NP_001142097.1| uncharacterized protein LOC100274261 [Zea mays]
gi|194707104|gb|ACF87636.1| unknown [Zea mays]
Length = 552
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 229/534 (42%), Positives = 311/534 (58%), Gaps = 30/534 (5%)
Query: 369 MRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 428
M K+ES T L+V++W+K+QP FLNRQ+I+LLS+L + D IF + Q + L+ IL+D
Sbjct: 1 MHKFESNHTVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFAQMQEAMLSNLNNILSDS 60
Query: 429 LKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN 488
A + + S E +L G P EP L ML R+S+LL L KTRIF+P
Sbjct: 61 DVAFDIVT-ASCAEQGTTAALMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPK 119
Query: 489 GRSMMGCLDETRTLNYGQVFVQISGAGYRQ-LHGESSLFSSSRSRQRFIVQGLVVVAKNP 547
GR +MGCLDE L GQ F++ S L S S++ + I+ G +V+AKNP
Sbjct: 120 GRWLMGCLDELGILEQGQCFIRASSPSLNNCLVKYGSRLSAANTNAETIL-GTIVMAKNP 178
Query: 548 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 607
CLHPGDVR+L+AV+VP LHH+VDC+VFP+KG RPH NE SGSDLDGD+YFV WD+ LIPP
Sbjct: 179 CLHPGDVRILEAVDVPELHHLVDCLVFPKKGERPHANEASGSDLDGDLYFVTWDENLIPP 238
Query: 608 QQDP--PMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARS 665
+ PMDY+PA++ QL V D+ +F +VN+ LG I+NAH V AD A
Sbjct: 239 GKKSWNPMDYSPAEAKQLPRAVSQHDIVGFFLKNMVNEKLGPISNAHVVHADMSEYGAMD 298
Query: 666 EPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVK 725
E C+QLAE + AVDFPKTG +P L K YPDFM K D +Y S+ ++G+L+R+++
Sbjct: 299 EKCIQLAELAATAVDFPKTGKIVSMPASLRPKLYPDFMGKEDAISYRSEKILGRLYRSIQ 358
Query: 726 -----DIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYY 780
D+ P +C YD DMEV G D + A K +Y+ +L L++ Y
Sbjct: 359 EASSDDLVPEETCTS------NNLPYDADMEVAGAADFLSSAWQCKCSYETQLNALLNQY 412
Query: 781 GIKTEAEILTGSIMKMSKSFTKRRD--AEAIGMAVRALRKEARAWFKEKSGSDTE--DDA 836
G++TEAE++T I + K ++R+ E + A AL KE R+ F+ TE DD
Sbjct: 413 GVRTEAELVTEHIWSLPKYSSRRQGDIKERLKNAYYALHKEFRSIFESIVTDQTEISDDE 472
Query: 837 YA-----KASAWYHVTYHPDYWGCYNQGMNRD-----HFLSFPWCVYDRLVEIK 880
+ KASAWY VTYHP++ + D LSF W + L IK
Sbjct: 473 KSRFYEMKASAWYQVTYHPEWVQKSREMFKSDCEDMPARLSFAWIAVEHLARIK 526
>gi|398388269|ref|XP_003847596.1| RNA-directed RNA polymerase, partial [Zymoseptoria tritici IPO323]
gi|339467469|gb|EGP82572.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
Length = 959
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 261/820 (31%), Positives = 408/820 (49%), Gaps = 106/820 (12%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 111
L + + +++ + + G + +D F + + ++ +E D+ + Y+P
Sbjct: 153 LAFSVHYQLEVCISVGALHESNIDRAFLQRLSTIETVRAVKMLEKIADEGKRI----YKP 208
Query: 112 SRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFR 171
S + R + + +P+ + +TP+ +YF P + SNRV+R+++
Sbjct: 209 SDIFSLHNRVSVVEKKRPAY--------CTKIPAANITPTTIYFATPVLETSNRVVRNYK 260
Query: 172 RDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEF 231
+ D F+R+ F DE H L + A + +++RI + +GI + DR +EF
Sbjct: 261 KYEDRFMRVKFTDEK----HKGQLQSQDGQAMN----EVFSRIKQAMTHGIRVADRHYEF 312
Query: 232 LAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSV 291
LAF ++Q RE A+ FAS L A IR+WMGNF +I+NVAKY +RLGQ +++++
Sbjct: 313 LAFGNAQFREHGAYFFASTPDLNANMIRQWMGNFTQIKNVAKYISRLGQCYTTTRAI--P 370
Query: 292 HMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKG 351
H +E IPDV+ + Y F+DG+GK+S AR VA L DN PS +Q R G KG
Sbjct: 371 HSVNVERIPDVE----RNGYCFTDGVGKISPLLARMVADHFRL-DNCPSVYQFRMAGCKG 425
Query: 352 VVAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIF 410
V+A DP+ + +R S K+ +E L++ S++ LN QLI ++S+LG+ D +F
Sbjct: 426 VLAVDPSLKGMTVQIRPSQEKFPAEFHGLEICKMSQFSAANLNVQLILVMSSLGVPDNVF 485
Query: 411 EKKQREAVRQLDAILTDPLKAQEALELMSPGENTN----ILKELLICGYKPDAEPFLSMM 466
K R+ + L +TD + AL+L+ + N L +++ G+ +PF
Sbjct: 486 VNKYRDMLADLALAMTD---EEMALKLLQKNIDFNQMTIYLATIILDGFMATKDPFTISC 542
Query: 467 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL------------------NYGQVF 508
L+ +R+ L L+ K R+F+ G + G DET TL Q+F
Sbjct: 543 LRLWRSWNLKYLKEKARVFVDQGAFVFGVTDETGTLQGQFDGFKTDEGDMAVPPTLPQIF 602
Query: 509 VQI----SGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 564
+QI + GY ++QG + A+NP LHPGD+R+++AV+VPA
Sbjct: 603 LQIPDPNAKGGYT------------------VIQGPCLFARNPSLHPGDIRMVEAVDVPA 644
Query: 565 LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLD 624
LHH+ DCVV PQ G R N CSG DLDGD Y +CWD +L PP D
Sbjct: 645 LHHLKDCVVLPQTGDRDLANMCSGGDLDGDDYLICWDADLFPPVSDT------------- 691
Query: 625 HDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKT 684
V ++D+ +F NYI N+ LG IA+ H +AD+E ++E CLQLA S+AVD+ KT
Sbjct: 692 GPVTVDDMTSFFVNYIKNNKLGQIASHHRFWADKEDDGVKNEKCLQLANLHSLAVDYVKT 751
Query: 685 GVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVK--DIAPHTSC---IRLFTK 739
GVPA +P L VK P + E + +Y S+ V+G+L+ VK + P R+ T
Sbjct: 752 GVPATLPVELKVKARPHWAEARGQ-SYTSRKVLGQLYDEVKLDNFQPAWELPFDARILTA 810
Query: 740 EVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKS 799
+ P E+ I A K YD + +M YGI E E+ T +
Sbjct: 811 DT------PTPEL------IAGATEVKAEYDETMRRIMKQYGITNEFEVFTTFVQSHHND 858
Query: 800 FTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAK 839
+ E IG LR + + K+G+D+ ++K
Sbjct: 859 INDYKFYEKIGEVSMNLRDQFKEICYTKAGTDSVQREWSK 898
>gi|358393612|gb|EHK43013.1| hypothetical protein TRIATDRAFT_225118 [Trichoderma atroviride IMI
206040]
Length = 1272
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 265/779 (34%), Positives = 407/779 (52%), Gaps = 72/779 (9%)
Query: 95 EHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVY 154
+H L+ L +E + P R+ M P PA + V + VTP+ +
Sbjct: 405 KHRLEVLVDQEEVVHNPMDIFA---RRTMA----PYRPATRIPHYCVLARKATVTPTSLL 457
Query: 155 FCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRI 214
P + SNRVLR+F + D FLR+ F+DE S ++ + + I+ ++
Sbjct: 458 LSSPAVETSNRVLRYFNQAQDRFLRVQFVDE----AESGRMTMNSHN-----KEEIWKKL 508
Query: 215 LSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKY 274
L TL GI IGDR++EFLAF SSQLR+S A+ F ++ +IR+WMG IR VAKY
Sbjct: 509 LRTLYEGIQIGDRRYEFLAFGSSQLRQSGAYFFCPTDHISCQDIRQWMGQVSHIRIVAKY 568
Query: 275 AARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL 334
AARLGQ FS+++E V + ++ I D++ + Y F+DG+G +S AR + + L
Sbjct: 569 AARLGQCFSTTREMKGVPIPDVRPIADIE----RNGYCFTDGVGMISGFMARMIVEELTL 624
Query: 335 KD-NPPSAFQIRYGGYKGVVAADPTSSK-KLSLRDSMRKYESELTKLDVLAWSKYQPCFL 392
+ N PSAFQ R GG KGV+ P + K ++ +R+S K++++ L+++ +KY L
Sbjct: 625 EVFNDPSAFQFRMGGCKGVLVVWPQAKKSEVYIRESQEKFKADAKNLEIIKCAKYTSATL 684
Query: 393 NRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELL 451
NRQ I++L LG+ + F + + + D A L+ + ++T +L ELL
Sbjct: 685 NRQTITILEHLGVPKKAFMDILEKQISLYEEAAKDNRVAVGMLKKCVDENQSTLVLAELL 744
Query: 452 ICGYKPD--AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL------- 502
G+K EPF+ +L +R+ L L+ K RI I ++GC+DET TL
Sbjct: 745 QAGFKTKNCQEPFVVNLLNLWRSWSLKLLKEKARIAIEQSAFVLGCVDETGTLRGHSNAT 804
Query: 503 ---------NYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGD 553
Q+F+Q+S +S ++ +++ +++G+ VV +NP LHPGD
Sbjct: 805 EGTSDKDVNKLPQIFLQVS---------DSKIYDTTK-----VIKGICVVGRNPSLHPGD 850
Query: 554 VRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD-PP 612
+RV++AV++P LHH+ D VVFP G RP PN SG DLDGD +FV W+ LIP + + P
Sbjct: 851 IRVVEAVDIPELHHLKDVVVFPSTGDRPVPNMLSGGDLDGDDFFVIWEPSLIPEKWNHPA 910
Query: 613 MDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADR-EPRKARSEPCLQL 671
M+Y+ +LD DV + D+ ++F NY+ ND L +IA AH ADR +P S CL+L
Sbjct: 911 MNYSSPPPPKLDRDVNVNDLRDFFVNYMKNDVLPLIATAHLALADRFDP---ASPICLRL 967
Query: 672 AEKFSIAVDFPKTGVPAEIPPHLY-VKEYPDFMEKPDKPTYESQNVIGKLF-RAVKD-IA 728
AE S AVD+PKTG PAE +Y + +P FMEK + Y+S +G ++ R +K I
Sbjct: 968 AELHSKAVDYPKTGDPAEFNHDMYNPQSWPHFMEKQQR--YKSARALGAIYDRVIKQTIE 1025
Query: 729 PHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEI 788
F K + R Y D + + A KG YD + ++ ++ + TE E+
Sbjct: 1026 FRPDWENAFDKRILNR-YQLDTGM------LKSARQIKGQYDAAVRRILSHHNLGTEFEL 1078
Query: 789 LTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVT 847
T M + + E +G A++ R E +G ED +A Y +T
Sbjct: 1079 YTSWAMTKPAIGSDYKRQEELGREFDAIKDRFRGLCFEAAGGRDEDKIDIFVAAMYKIT 1137
>gi|46128677|ref|XP_388892.1| hypothetical protein FG08716.1 [Gibberella zeae PH-1]
Length = 1295
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 262/778 (33%), Positives = 405/778 (52%), Gaps = 50/778 (6%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
V R +TP+ V + P I VSNRV+R FR D FLRI F +E + +
Sbjct: 486 VRRAVITPTTVRYSTPNIEVSNRVMRRFRHIQDRFLRIQFTEE---------MEKGKITV 536
Query: 203 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM 262
IY RIL T+ GI IGDR +EFLAF +SQLR + A+ F ++ +IR+WM
Sbjct: 537 NKDQNDEIYKRILRTMYEGIRIGDRLYEFLAFGNSQLRSNGAYFFCPTEYVSCDDIRQWM 596
Query: 263 GNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSA 322
G F I+ VAKYAARLGQ FS++++ + IPDV+ + Y F+DG+GK+S
Sbjct: 597 GQFSHIKVVAKYAARLGQCFSTTRDVRGISSPNCLQIPDVE----RNGYCFTDGVGKISV 652
Query: 323 EFARKVASKCGLKD-NPPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKL 379
A+ V + PSAFQ R GG KGV+A P +K ++ +R+S +K+ES+ L
Sbjct: 653 FLAKLVGEDMAIDICADPSAFQFRMGGCKGVLAVWPEDAKGTEVHVRESQKKFESDSKGL 712
Query: 380 DVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LM 438
+++ W++Y LN Q I +L LG+ + F + ++Q + + D A E LE
Sbjct: 713 EIIRWARYATATLNLQTILILECLGVPIKSFTTLLDQQLKQYELAMRDNDVAIEMLERFR 772
Query: 439 SPGENTNILKELLICGYKPDA--EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL 496
N + L +LL +K + EPF+ ++ +++ + L+ K RI +P ++GC+
Sbjct: 773 DEQHNHSCLADLLRADFKTETFQEPFVVNVINLWQSWSIKSLKEKARIHVPKSAFVLGCV 832
Query: 497 DETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRF----IVQGLVVVAKNPCLHPG 552
DET TL G F G+ + +H +F +++ I++G VV +NP LHPG
Sbjct: 833 DETGTLR-GHSF-DTEGSKEKDVHRLPQIFLQISDPKKYNKTSIIRGPCVVGRNPSLHPG 890
Query: 553 DVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD-P 611
D+RV++AV+ ALHH+ D VVFP G RP PN SG DLDGD +FV WD L+P + + P
Sbjct: 891 DIRVVEAVDCKALHHLTDVVVFPSTGDRPVPNMLSGGDLDGDDFFVIWDPSLMPSEWNHP 950
Query: 612 PMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQL 671
PM+Y+P ++L DV ++D+ +F Y+ ND L +IA +H FAD +S CL+L
Sbjct: 951 PMNYSPLDPIELKRDVNVDDLRNFFVKYLKNDKLPLIAMSHRAFADE--LGPKSSKCLEL 1008
Query: 672 AEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAV--KDIAP 729
AE S AVD+PKTG PA + +++P +MEK + +Y S+ +G ++ V K +
Sbjct: 1009 AELHSKAVDYPKTGNPAVLRQDQQPRKWPHWMEK--RHSYHSRKALGVIYDKVAHKKVEF 1066
Query: 730 HTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEIL 789
+ R F K + +R ++ D E G I K YD + ++ +KTE E+
Sbjct: 1067 NPVWDRPFDKRITKR-FELDNETLGVARKI------KAEYDTAVRRILSQNSLKTEFELF 1119
Query: 790 TGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYH 849
T + + + AE + R++++ + + +G + +A Y VT
Sbjct: 1120 TSFPLTRPAVGSDYKFAEDLSCEFRSIKEHYQDVCIKAAGGKDAEKLEPFVAAMYTVTEE 1179
Query: 850 P---DYWGCYNQGMNRDH--FLSFPWCVYDRLVEIKKD-----KTSIGNAFPALEQQF 897
+ QG+ +SFPW + + I + +T+IG EQ F
Sbjct: 1180 QIKNEESILQPQGLEPKSMPLISFPWIFHGVMCRIATEGAVDPRTNIG-THGTTEQSF 1236
>gi|380480880|emb|CCF42174.1| RNA dependent RNA polymerase [Colletotrichum higginsianum]
Length = 1271
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 248/747 (33%), Positives = 393/747 (52%), Gaps = 42/747 (5%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
+ +V VTPS ++FC P + SNRVLR + D F+R+ F DE +G
Sbjct: 444 IRKVIVTPSTMHFCSPSVEASNRVLRKYSSHQDRFIRVQFTDELY----------KGKIY 493
Query: 203 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM 262
D ++ RI L+ GI IG+R +EFLAF +SQ+RE + + F +T +IR+WM
Sbjct: 494 ND-AGDEVFDRIYRALKRGIKIGNRIYEFLAFGNSQIRECAVYFFCPTDYVTCDDIRKWM 552
Query: 263 GNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSA 322
G F I+NVAKYAAR+GQ FS+++E + + IE D++ + +Y FSDG+GK+S
Sbjct: 553 GEFNHIKNVAKYAARIGQCFSTTREIRGITVPRIEQAKDIQ----RGEYCFSDGVGKISK 608
Query: 323 EFARKVASKCGLKD-NPPSAFQIRYGGYKGVVAADPTSSK-KLSLRDSMRKYESELTKLD 380
A V ++ G + PSAFQ R GG KG++A P + ++ +R S K++++ L+
Sbjct: 609 LLAEMVVNEMGQEAVGIPSAFQFRMGGCKGMLAVWPDAKGLEVHIRPSQEKFKAQFNGLE 668
Query: 381 VLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMS 439
++ ++Y LNRQ I++L+TLG+ E K ++ ++ + + D + A L + +
Sbjct: 669 IIKSAQYSVATLNRQTITILTTLGVKSEPILKLAKQQIQNYEKAMDDQVAATGLLGKYID 728
Query: 440 PGENTNILKELLICGY--KPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLD 497
+ +K+L+ G+ K EPF+ +L +R + L+ K R+ I ++GCLD
Sbjct: 729 ENMTSLTIKDLVCWGFMDKEVQEPFVLTILNLWRIWSMKLLKEKARVIIEQSAFLLGCLD 788
Query: 498 ETRTLNYGQVFVQISGAGYRQLHGESSLF---SSSRSRQRFIVQGLVVVAKNPCLHPGDV 554
ET L + G R +H +F +S + + V G+ +V +NP LHPGD+
Sbjct: 789 ETGILRGHSKATE--GKTTRNIHDLPQIFLQIPNSEDGKHYCVTGVCIVGRNPSLHPGDI 846
Query: 555 RVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQ-QDPPM 613
RV++AV+VP LHH+ + VVFP G R P+ SG DLDGD +FV W+ +LIP + PPM
Sbjct: 847 RVVEAVDVPTLHHLKNVVVFPSIGDRDVPSMLSGGDLDGDDFFVIWNPDLIPREWHHPPM 906
Query: 614 DYTPAQSMQLDHD-VQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLA 672
+Y ++ L V++ D+ +F YI ND L ++A AH AD A+ CL+LA
Sbjct: 907 NYIAPRAKVLRRGFVKVSDLRTFFVRYIQNDCLALVATAHLALADHSRVGAKDHRCLKLA 966
Query: 673 EKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTS 732
E S AVD+ KT PA+ PP L+ K +P FM + + TY S + +G+++ ++D + +
Sbjct: 967 ELHSKAVDYVKTADPAKFPPDLHPKAWPHFMNR--RCTYRSSSALGQIYDMIQDQSLNPL 1024
Query: 733 CIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGS 792
F + R D + + A K YD L LM + ++TE E TG
Sbjct: 1025 YGNKFDTRILTRFPLSD-------EILRKARKVKTQYDTSLRRLMSHRDVQTEFEAWTGF 1077
Query: 793 IMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDY 852
++ + + + E IG AL++ R +++GS DD +A Y VT
Sbjct: 1078 VLSKPRVGSDYKQHEDIGRESSALKQRYREICYKEAGSRHYDDFAPFVAAMYKVTEEQVN 1137
Query: 853 WGCYNQGMNRDH------FLSFPWCVY 873
+ + +H SFPW +
Sbjct: 1138 AALAKEYEDEEHKRHSMPLTSFPWIFH 1164
>gi|336264581|ref|XP_003347067.1| hypothetical protein SMAC_05269 [Sordaria macrospora k-hell]
gi|380093080|emb|CCC09317.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1703
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 284/901 (31%), Positives = 455/901 (50%), Gaps = 86/901 (9%)
Query: 23 EDRF--VLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFY- 79
+DR+ ++ S+ S + D + PP I+LP+++ +++ + + G + +D F
Sbjct: 414 DDRYGHAIQPASSQSWNNDFSLLAAPPR-ISLPFDVRYQLEVCISQGIINEHNIDRPFLE 472
Query: 80 RLVDPYRAPVSIS------CIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPA 133
+L + S++ +E+A D+ + + ++P D R PS+
Sbjct: 473 KLTEFCNDDNSLNKDRARLILEYAADE--YAGKRIFDPMGLFKDS----AAMRYFPST-- 524
Query: 134 ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHST 193
+ + V RV +TP+R+YF P + +NRV+R +R D F+RI F DE L+
Sbjct: 525 FIIPNYCALVRRVTITPTRIYFSTPYVEPTNRVIRQWRFAQDYFIRIQFTDEVLE----- 579
Query: 194 DLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL 253
G + ++ R L+ GI +G ++FLAF +SQ+RE+ A+MF + L
Sbjct: 580 -----GRIRSGEAELPLFLRAYRVLQEGIAMGLWHWKFLAFGNSQIREAGAYMFCEQSDL 634
Query: 254 TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 313
T +R WMG F I+ +AKYAARLGQ FS+++ + I IPDV+ K + F
Sbjct: 635 TCDMMRSWMGRFSHIKVIAKYAARLGQCFSTTRLVPGIPAPRIVTIPDVE----KDGFCF 690
Query: 314 SDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKY 372
+DG+GK+S A+ + + L D PSAFQ R GG KGV+ P ++ +R S K+
Sbjct: 691 TDGVGKISPLLAKIITHEWSL-DRLPSAFQFRMGGCKGVLVTWPDVKGMEVHIRKSQEKF 749
Query: 373 ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 432
+E L+V+ S + LNRQ I++LS+LG+ D++F + + +A + D KA
Sbjct: 750 VAEFNGLEVIKCSAFATATLNRQTIAVLSSLGVPDQVFVDMMEKQLSDYNAAMVDKRKAT 809
Query: 433 EAL-ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRS 491
E L + + T I+ ++L G+ EPF+ +LQ +R+ + L+ K R+ +
Sbjct: 810 EYLRKYVDENHITPIIAQMLSYGFMESQEPFVRTLLQLWRSWSIKTLKEKARLSVEKSAF 869
Query: 492 MMGCLDETRTLNYGQVFVQISGAGYRQLHGES--SLF---SSSRSRQRFIVQGLVVVAKN 546
++GC+DE+RTL ++ G++ + E +F + + ++ G VV +N
Sbjct: 870 VLGCVDESRTLKGHMKVIE----GWKDVPSEKLPQIFLQIPDNVNDGYKVITGTCVVGRN 925
Query: 547 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIP 606
P LHPGD+RV++AV+VPAL H+ D VVFP G R P+ CSG DLDGD +FV WD L+P
Sbjct: 926 PSLHPGDIRVVEAVDVPALRHIRDVVVFPLTGDRDVPSMCSGGDLDGDDFFVIWDPLLVP 985
Query: 607 PQQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARS 665
++ PPM P +L ++ + ++ +F Y+ +++L +IA+AH AD E +S
Sbjct: 986 NERSHPPMINEPVVGKELANEPTVNNLVTFFVLYMKHNNLPLIAHAHMATADAEMDGVKS 1045
Query: 666 EPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVK 725
CL+LA S+AVD+ KTGVPA P L K +P FMEK K Y S +GKL+ VK
Sbjct: 1046 SKCLELAILHSMAVDYVKTGVPAVFPKRLDPKSWPHFMEK-KKRDYHSATALGKLYDMVK 1104
Query: 726 ----DIA-----PHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNL 776
D+ P S I TK A R ++ + A K YD + +
Sbjct: 1105 RETFDMKENYELPFDSRILKHTKCRALR-----------DETLTKARRIKSQYDTAMRRV 1153
Query: 777 MDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDA 836
M I TE E+ T +M + ++ + E +G AL++ R ++++G D
Sbjct: 1154 MCQLEIATEFEVWTAFVMSKPRVGSEYKLQENVGRESSALKQHFRDQCRKEAGGDL---- 1209
Query: 837 YAKASAWYHVTYH---------------PD-YWGCYNQGMNRDHFLSFPWCVYDRLVEIK 880
+ SA Y VTY PD G +SFPW +D+L E+
Sbjct: 1210 LSFVSAMYRVTYEEVRIALHEAKQPHIRPDGSLGTRRITPKTMPLVSFPWLFWDKLGELA 1269
Query: 881 K 881
+
Sbjct: 1270 R 1270
>gi|260801475|ref|XP_002595621.1| hypothetical protein BRAFLDRAFT_64731 [Branchiostoma floridae]
gi|229280868|gb|EEN51633.1| hypothetical protein BRAFLDRAFT_64731 [Branchiostoma floridae]
Length = 1492
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 256/639 (40%), Positives = 354/639 (55%), Gaps = 57/639 (8%)
Query: 267 EIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK----TKYVFSDGIGKVSA 322
++R A Y AR+GQ FS+++ +++V ++ I D IE G+ Y FSDGIGK+S
Sbjct: 587 QVRCPATYLARMGQCFSTTESSVTVRPGQVSRIAD--IEGGRDPDGKSYCFSDGIGKISR 644
Query: 323 EFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDV 381
+ A++V K + + PSAFQ+RY G KG++A DPT + + R SM K+ SE +++
Sbjct: 645 DLAKEVCEKTQ-RSHEPSAFQVRYAGVKGMLAVDPTLTGLAMQYRKSMEKFSSEHNNIEI 703
Query: 382 LAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPG 441
+ S +LNRQ+IS+LS LGI DE+F+ Q + +R+L ++ +A +AL +
Sbjct: 704 CSESHPARFYLNRQIISILSGLGIPDEVFQVLQEDQLRKLASMFLLENRAVDALNQRAQL 763
Query: 442 ENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDET 499
K L CG EPF ML+ S + + R K RI IP GR+M+G LDET
Sbjct: 764 SGVPYQK-LSNCGVYMTREPFFKGMLRRVYKSGIGDTRRKARIEIPPEYGRNMLGVLDET 822
Query: 500 RTLNYGQVFVQ----ISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR 555
TL YGQVFVQ I+ G GE+ + + G VVV++NPC HPGDVR
Sbjct: 823 GTLEYGQVFVQYTEDITDKG-----GETKVLT-----------GDVVVSRNPCFHPGDVR 866
Query: 556 VLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI--PPQQDPPM 613
L+AV+VPALHHMVD +VFP KG RPHPNE SG DLDGD +FV W +L+ P D PM
Sbjct: 867 KLRAVDVPALHHMVDVIVFPSKGPRPHPNEMSGGDLDGDQFFVTWHPDLLFQRPNAD-PM 925
Query: 614 DYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAE 673
+ + ++L+ V I D++ + +YI +D LG+IANAH F+D+E S+ CL LAE
Sbjct: 926 HFKAPKKIELE-IVTISDLQNFIVDYIKSDILGVIANAHLAFSDKEEDGVFSQVCLNLAE 984
Query: 674 KFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTY-ESQNVIGKLFRAVKDIAPHTS 732
K S AVDFPKTGVP + K YPDFM+K K T S+ +G+++R + I S
Sbjct: 985 KHSDAVDFPKTGVPVGLSDDERPKAYPDFMDKSHKKTVRRSEKAMGEMYRECQAIENICS 1044
Query: 733 CIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGS 792
T E DP + + + + A +G Y+ +L LMD YGI+TEAE ++G
Sbjct: 1045 APEK-TDEAETIEPDPYLILPTHQRYKRQAEQSRGRYNDQLKYLMDRYGIETEAEAMSGC 1103
Query: 793 IMKMSKSFTKRRDAEAIGMA----VRALRKEARAWF-------KEKSGSDTEDDAYAKAS 841
I ++ K R D + ++ LR+ R F K SD + AKAS
Sbjct: 1104 IGRIHKHMDNRYDRHEVERVFKERIKDLRRRTREEFFVEFGGEKNVKKSDYPPEVQAKAS 1163
Query: 842 AWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIK 880
AWY VTY N + LSFPW V D L IK
Sbjct: 1164 AWYVVTY---------SDANENRLLSFPWIVGDILAVIK 1193
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 129/215 (60%), Gaps = 13/215 (6%)
Query: 135 SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTD 194
+L L V RV VTP+R+ F PEI NRVLR F D+FLR+ F DED K+ +T
Sbjct: 384 TLPATLQVVARVIVTPTRLVFLQPEIMYGNRVLREF--GTDHFLRVVFRDEDFSKLQATG 441
Query: 195 LSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLT 254
+ RG+ + +I+ R+ L+ GI +G+R +EFLA S+SQLRE W FAS
Sbjct: 442 -TGRGNGDEE---EKIFVRVRKVLKKGIKVGNRLYEFLAASNSQLREHGLWFFASDGRNR 497
Query: 255 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK----TK 310
A IR+WMG+F R A Y AR+GQ FS+++ +++V ++ I D IE G+
Sbjct: 498 ADSIRDWMGDFSNSRCPATYLARMGQCFSTTESSVTVRPGQVSRIAD--IEGGRDPDGKS 555
Query: 311 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIR 345
Y FSDGIGK+S + A++V K + + PSAFQ+R
Sbjct: 556 YCFSDGIGKISRDLAKEVCEKTQ-RSHEPSAFQVR 589
>gi|189202022|ref|XP_001937347.1| RNA-directed RNA polymerase Rdp1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187984446|gb|EDU49934.1| RNA-directed RNA polymerase Rdp1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 1604
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 253/770 (32%), Positives = 410/770 (53%), Gaps = 58/770 (7%)
Query: 146 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD-KIHSTDLSPRGSSATD 204
V +TP+ ++ P + SNR++R + D D F+R+ F DE + ++ S P G S
Sbjct: 653 VVITPTMMHVASPVMETSNRIIRKYAADSDRFIRVKFSDEKTEGQLRSM---PNGKSGA- 708
Query: 205 ITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGN 264
++ R+ +R+GI++ R ++FLAF +SQ RE A+ FA ++A +IR +G+
Sbjct: 709 -----VFDRVRRAMRHGIVVAGRYYDFLAFGNSQFREHGAYFFAPTSSMSANDIRLSLGD 763
Query: 265 FREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEF 324
F ++ VAK+ ARLGQ FS+++ +S + I+ IP EI + Y F+DG+GK+S
Sbjct: 764 FTNVKTVAKFGARLGQCFSTTR-AMSQKVS-IKPIP----EIMRNGYTFTDGVGKLSPFV 817
Query: 325 ARKVASKCGLK---DNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLD 380
A+ A + GL D+PPS FQ R GG KGV+A DPT + ++ +R S +K++++ L+
Sbjct: 818 AKMAAEELGLSNAFDDPPSLFQFRLGGCKGVLALDPTITGTEVHIRPSQQKFQAKFMGLE 877
Query: 381 VLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD-PLKAQEALELMS 439
++ S + F NRQ+I +LS LG+ D + KKQ+E V + +TD + Q+ + +
Sbjct: 878 IIRSSAFATPFFNRQIIVVLSHLGVPDHVIIKKQQEMVNDYETAMTDESVAIQKLRKHID 937
Query: 440 PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET 499
+ T + +++ G+ +PF+ +L+ +RA + L+ K RI I +G ++GC+DET
Sbjct: 938 MNQTTLAMAAMVLDGFMKVQDPFMMSLLKLWRACTIKNLKEKARIAIEDGAFVLGCVDET 997
Query: 500 RTL--NYGQVFVQISGAGYRQLHGESSLF----SSSRSRQRFIVQGLVVVAKNPCLHPGD 553
L + ++ +L +F +++ I++G+ ++A+NP LHPGD
Sbjct: 998 AKLKGHMNDPQSRLDATRDEKLATLPEIFLQVDDTNKKGHYKIIEGVCILARNPSLHPGD 1057
Query: 554 VRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD-PP 612
+RV++AVN+P L H+ + VV PQ G R N CSG DLDGD Y V WD LIP + PP
Sbjct: 1058 LRVVRAVNIPELQHLKNVVVLPQTGDRDLANMCSGGDLDGDDYMVLWDTALIPKTINAPP 1117
Query: 613 MDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLA 672
MD+TP + +++ + + E+F Y+ ND+LG IA+AH AD + CL LA
Sbjct: 1118 MDFTPEKPEEIEGPIGAAHMGEFFVTYMKNDTLGQIAHAHLAQADSRDDGVNDQTCLALA 1177
Query: 673 EKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEK---PDKPTYESQNVIGKLFRAVKDIAP 729
E S AVDFPK+G+PAE+ L K++P FMEK P+ Y S ++G L+ V+ +
Sbjct: 1178 ELHSKAVDFPKSGLPAEMNRELRPKKWPHFMEKKHMPEYKIYHSTKILGMLYDQVQLVDF 1237
Query: 730 HTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEIL 789
F K + D+E E +A K +YD L LM +GI+TE E
Sbjct: 1238 KPQWENPFDKRILNAF---DLE----ETMKVEAAKIKSSYDDALRRLMAKHGIRTEFEAW 1290
Query: 790 TGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAK----ASAWYH 845
+ ++ + + +E G V L+ + R ++ +G D E +++ +A Y
Sbjct: 1291 SVFVLAHNHESRDYKFSEEFGRTVATLKDQYRGECRKAAGRDNELADWSRLGPFVAAMYT 1350
Query: 846 VT---YHPDYWGCYN-----------QGMNRDH--FLSFPWCVYDRLVEI 879
VT C+ + M +H +SFPW L +I
Sbjct: 1351 VTAQEMEAALVECHTTKTVGGQEAPARAMEPEHMPLISFPWLFPSELGKI 1400
>gi|406868525|gb|EKD21562.1| RNA-dependent RNA polymerase 1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1494
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 272/838 (32%), Positives = 431/838 (51%), Gaps = 84/838 (10%)
Query: 35 SRSLDLVPIVGP--------------PDGIALPYEILFKINLLVQNGCVAGPLLDSNFYR 80
SR DL P++ P LP+E+ +++ + C++ +L N Y
Sbjct: 367 SREPDLWPLIDPRHSADASGDLQYLSEGAYVLPFEVRYQLEV-----CISREIL--NEYN 419
Query: 81 LVDPYRAPVS-ISCIEHA-----LDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAI 134
+ + +S I+ ++ A L+ + ++ Y+P DQ T++++
Sbjct: 420 VTRGFVKKLSEIASVDAAKARNILEYVAGQEKRVYDPMTIFEDQEALAFTAKTE------ 473
Query: 135 SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN--FLRISFIDEDLDKIHS 192
+ Y + +TPS +YF P + +NRVLRH+ R+ + FLR+ F DE +
Sbjct: 474 -IPHYCAYSRKATITPSTMYFSSPTVETTNRVLRHYARENRDGRFLRVQFTDELAEG--- 529
Query: 193 TDLSPRGSSATDITRT-RIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY 251
R ++ D + ++TRI TL NGI IGDR +EFLAF +SQ RE+ A+ F
Sbjct: 530 -----RINACVDNQKNDELFTRIYRTLFNGIQIGDRHYEFLAFGNSQFRENGAYFFCPTE 584
Query: 252 GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY 311
L+ +IR WMG+F +I+ VAKYAARLGQ FS+++ + +I I DV+ Y
Sbjct: 585 HLSCDDIRGWMGHFSDIKVVAKYAARLGQCFSTTRAINGLSKPDIVKIADVE----NNGY 640
Query: 312 VFSDGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADPTS-SKKLSLRDSM 369
F+DG+GK+S A+ ++++ GL+ N PSAFQ R GG KGV+ P + K++ +R S
Sbjct: 641 TFTDGVGKISPFLAQMISAELGLRTNTAPSAFQFRLGGCKGVLVVWPDAKEKEVHIRMSQ 700
Query: 370 RKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD-AILTDP 428
+K+ + L+++ +++ LNRQ I++LS LG+ DE+F K E + A+ D
Sbjct: 701 QKFTAVYNGLEIIRCARFSCATLNRQTITILSALGVPDEVFLKMLSEQLANYQTAMDNDD 760
Query: 429 LKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN 488
L + + T + ++ G+ + +PF+ +L +R+ + L+ K +I I N
Sbjct: 761 AAVSLLLRYIDDNQMTINIATMIRNGFMAEKDPFVLSLLHLWRSWSIKLLKEKAKIIIEN 820
Query: 489 GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFS-------SSRSRQRFIVQGLV 541
G ++GC+DET TL IS A + + E L S + I+ G+
Sbjct: 821 GAFVLGCVDETFTLRG----YTISTAPHGEQVAEEELPQIFLQVPDKSDPNRYNIITGIC 876
Query: 542 VVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWD 601
+V +NP LHPGD+RV++AV+VPALHH+ D VVFP G R P+ CSG DLDGD +FV WD
Sbjct: 877 LVGRNPSLHPGDLRVVQAVDVPALHHLRDVVVFPASGDRDVPSMCSGGDLDGDDFFVIWD 936
Query: 602 DELIPPQQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREP 660
+ L P + + PM+Y + + VQI D+ ++F ++ NDSL IA+AH +D
Sbjct: 937 EALRPREWNCQPMNYIAPKPKLHNQPVQIVDLMKFFVRFMKNDSLPAIAHAHLAQSDALQ 996
Query: 661 RKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKP---TYESQNVI 717
+ C++LA S AVD+ KTG A++P HL +++P FMEK KP Y S ++
Sbjct: 997 MSVKDPKCIELASLHSKAVDYVKTGEAAQMPKHLRPRKWPHFMEKKHKPKTAQYHSNEIL 1056
Query: 718 GKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYH-----KGNYDYK 772
G+L+ V+ + F K + + +DDAI K YD
Sbjct: 1057 GQLYDKVETVDFKPQYEGPFDKRILKAYI------------LDDAILKTVRQIKSKYDTA 1104
Query: 773 LGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGS 830
+ LM IKTE EI + ++ + + + E I AL+ + RA K+GS
Sbjct: 1105 MKRLMAQQEIKTEFEIWSTFVLSRPRVGSDYKVQEEIARLSDALKDQFRAECIGKAGS 1162
>gi|408392756|gb|EKJ72076.1| hypothetical protein FPSE_07701 [Fusarium pseudograminearum CS3096]
Length = 1206
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 259/769 (33%), Positives = 400/769 (52%), Gaps = 49/769 (6%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
V R +TP+ V + P I VSNRV+R FR D FLRI F +E + +
Sbjct: 397 VRRAVITPTTVRYSTPNIEVSNRVMRRFRHIQDRFLRIQFTEE---------MEKGKITV 447
Query: 203 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM 262
IY RIL T+ GI IGDR +EFLAF +SQLR + A+ F ++ +IR+WM
Sbjct: 448 NKDQNDEIYKRILRTMYEGIRIGDRLYEFLAFGNSQLRSNGAYFFCPTEYVSCDDIRQWM 507
Query: 263 GNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSA 322
G F I+ VAKYAARLGQ FS++++ + IPDV+ + Y F+DG+GK+S
Sbjct: 508 GQFSHIKVVAKYAARLGQCFSTTRDVRGISSPNCLQIPDVE----RNGYCFTDGVGKISV 563
Query: 323 EFARKVASKCGLKD-NPPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKL 379
A+ V + PSAFQ R GG KGV+A P +K ++ +R+S +K+ES+ L
Sbjct: 564 FLAKLVGEDMAIDICADPSAFQFRMGGCKGVLAVWPEDAKGTEVHVRESQKKFESDSKGL 623
Query: 380 DVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LM 438
+++ W++Y LN Q I +L LG+ F + +RQ + + D A E LE
Sbjct: 624 EIIRWARYATATLNLQTILILECLGVPIRSFTTLLDQQLRQYELAMRDNDVAIEMLERFR 683
Query: 439 SPGENTNILKELLICGYKPDA--EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL 496
N + L +LL +K + EPF+ ++ +++ + L+ K RI +P ++GC+
Sbjct: 684 DEQHNHSCLADLLRADFKTETFQEPFVVNVINLWQSWSIKSLKEKARIHVPKSAFVLGCV 743
Query: 497 DETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRF----IVQGLVVVAKNPCLHPG 552
DET TL G F G+ + +H +F +++ I++G VV +NP LHPG
Sbjct: 744 DETGTLR-GHSF-DTEGSKEKDVHRLPQIFLQISDPKKYNKTSIIRGPCVVGRNPSLHPG 801
Query: 553 DVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD-P 611
D+RV++AV+ ALHH+ D VVFP G RP PN SG DLDGD +FV WD L+P + + P
Sbjct: 802 DIRVVEAVDCKALHHLTDVVVFPSTGDRPVPNMLSGGDLDGDDFFVIWDPSLMPSEWNHP 861
Query: 612 PMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQL 671
PM+Y+P ++L DV ++D+ +F Y+ ND L +IA +H FAD +S CL+L
Sbjct: 862 PMNYSPLDPIELKRDVNVDDLRNFFVKYLKNDKLPLIAMSHRAFADE--LGPKSSKCLEL 919
Query: 672 AEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAV--KDIAP 729
AE S AVD+PKTG PA + +++P +MEK + +Y S+ +G ++ V K +
Sbjct: 920 AELHSKAVDYPKTGNPAVLRQDQQPRKWPHWMEK--RYSYHSRKALGVIYDKVAHKKVEF 977
Query: 730 HTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEIL 789
+ F K + +R ++ D E G I K YD + ++ +KTE E+
Sbjct: 978 NPVWDSSFDKRITKR-FELDNETLGVARKI------KAEYDTAVRRVLSQNALKTEFELF 1030
Query: 790 TGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYH 849
T + + + AE + R++++ + + +G + +A Y VT
Sbjct: 1031 TSFPLTRPAVGSDYKFAEDLSCEFRSIKEHYQDVCIKAAGGKDAEKLEPFVAAMYTVTEE 1090
Query: 850 P---DYWGCYNQGMNRDH--FLSFPWCVYDRLVEIKKD-----KTSIGN 888
+ QG+ +SFPW + + I + +T+IG
Sbjct: 1091 QIKNEESILQPQGLEPKSMPLISFPWIFHGVMCRIATEGAVDPRTNIGT 1139
>gi|449301850|gb|EMC97859.1| hypothetical protein BAUCODRAFT_67567, partial [Baudoinia
compniacensis UAMH 10762]
Length = 1035
Score = 394 bits (1013), Expect = e-106, Method: Compositional matrix adjust.
Identities = 240/721 (33%), Positives = 395/721 (54%), Gaps = 48/721 (6%)
Query: 148 VTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITR 207
+TP+ + P + +NR++R + +D+FLR+ F DE + + +D +
Sbjct: 291 ITPTSLIISTPVVETTNRIIRKYEHIVDHFLRVKFTDERY--------KGKVMNNSDNNQ 342
Query: 208 TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFRE 267
I+TR+ TL+NGI I R ++FLAF +SQ RE+ A+ FAS L+AA+IR MG F
Sbjct: 343 DEIFTRVKRTLQNGIQIAGRHYDFLAFGNSQFRENGAYFFASTPDLSAADIRVAMGTFTH 402
Query: 268 IRNVAKYAARLGQSFSSSKE-TLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFAR 326
I VAKYA+RLGQ FS+++ + V +D + +I + Y F+DG+GKVS A+
Sbjct: 403 ITTVAKYASRLGQCFSTTRGLSYRVRVDALA-------DITRNGYTFTDGVGKVSPFIAQ 455
Query: 327 KVASKCGLKD---NPPSAFQIRYGGYKGVVAADPTSSKK----LSLRDSMRKYESELTKL 379
VA G + + PS Q R GGYKGV+A DPT + K + R S K+ + L
Sbjct: 456 MVAQTFGFPNAFVDYPSVIQFRLGGYKGVLAVDPTLTGKDNMVIQTRPSQMKFPAVYHGL 515
Query: 380 DVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELM 438
++ S++ +LN+Q+I +LS G+ D++F K ++A++ L + D KA++ L + +
Sbjct: 516 EICRLSQFTAAYLNQQIILVLSARGVEDKVFVVKVQQALKDLQDAMIDEDKAKDQLCKKI 575
Query: 439 SPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 498
T +L +++ G+ +PF+ ++ +R+ + L+ K RIF+ G ++GC DE
Sbjct: 576 DYNHTTLVLAQMIDDGFMAVRDPFMMSCMRLWRSWMVKYLKEKARIFVDEGAFVLGCTDE 635
Query: 499 TRTL----NYGQVFVQISGAG-----YRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 549
T TL N V ++ A + Q+ ++ V+G+ ++A+NP L
Sbjct: 636 TTTLRGDFNADNHTVDLTDATPLPEIFLQIP------DVAKKGSYVAVKGVCLLARNPSL 689
Query: 550 HPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ 609
HPGD+RV++A++VPALHH+ +CVV PQ G R N CSG DLDGD + V WD +LIPP+
Sbjct: 690 HPGDIRVVRAIDVPALHHLKNCVVLPQTGDRDLANMCSGGDLDGDDFLVIWDKQLIPPEW 749
Query: 610 -DPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADRE-PRKARSEP 667
PMDY + ++ + + ++ + +F Y+ ++++GIIA AH AD +
Sbjct: 750 YHSPMDYQAPEPVKAELPITVDAITSFFVTYMKHNNVGIIACAHRYTADDGFSEGVKDFK 809
Query: 668 CLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDI 727
CLQLA+ S+AVD+ KTGVPA +P L V++YP + E+P K +Y S+ V+G+L+ AV+ I
Sbjct: 810 CLQLAQLHSMAVDYMKTGVPAVMPNELRVRKYPHWAERPGKSSYHSRRVLGQLYDAVQRI 869
Query: 728 APHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAE 787
+ F + + +Y D + + A K YD + +M YG++ E E
Sbjct: 870 DLQPAWDLPFDERIL-SAYQLDAVL------LQAASEVKVRYDEAVQRIMAQYGVENEFE 922
Query: 788 ILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVT 847
I T + ++ + E +G V L++ + EK+G+ ++ + K + +
Sbjct: 923 IWTTFVRSHNQDENDYKFTEKLGETVTTLKQYYQETCYEKAGTSAQERDWTKIAPFIAAM 982
Query: 848 Y 848
Y
Sbjct: 983 Y 983
>gi|255944161|ref|XP_002562848.1| Pc20g02950 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587583|emb|CAP85624.1| Pc20g02950 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1368
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 262/773 (33%), Positives = 404/773 (52%), Gaps = 57/773 (7%)
Query: 142 YVHRVQVTPSRVYFCGPEINVSNRVLRHF--RRDIDNFLRISFIDEDLDKIHSTDLSPRG 199
++ ++TP+ +Y+ P +++SNRV+R + + FLR+ F DE + + S RG
Sbjct: 465 FMRTARITPTTIYYNTPTVDISNRVVREWSTKGTPGRFLRVRFTDEKTEG--RINASQRG 522
Query: 200 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 259
+ +YTR+ TL NGI IGDR +EFLAF +SQ RE A+ A G++A IR
Sbjct: 523 CN------DEVYTRVKRTLANGIAIGDRHYEFLAFGNSQFREHGAYFVAPDAGISAGTIR 576
Query: 260 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 319
WMG F IRNVAKY ARLGQ FS+++ + ++ IP +I + + FSDG+GK
Sbjct: 577 AWMGQFNHIRNVAKYTARLGQCFSTTR---AFTGSSVQTIP--CDDIIRNGFTFSDGVGK 631
Query: 320 VSAEFARKVASKCGLK---DNPPSAFQIRYGGYKG--VVAADPTSSKKLSLRDSMRKYES 374
+S A+ V S+ +K PPSAFQ R GG KG VV+ DP +++ +R S +K+E+
Sbjct: 632 ISKFLAQMVTSQHDIKTLTGEPPSAFQFRLGGAKGMLVVSTDPL-PQEVHIRPSQQKFET 690
Query: 375 ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEA 434
L+++ WS+Y LNRQ+I +LS LGI DE+F K + + + KA
Sbjct: 691 SQAGLEIIRWSQYSLATLNRQIILVLSALGIPDEVFHSKLNTMLGSFHRAMLNDSKAINL 750
Query: 435 LE-LMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 493
L+ + P + T L +++ G++ + EPF++ ML+ +++ L L+ K +I I G +++
Sbjct: 751 LQKYIDPNQMTLTLAQMVSDGFRRNEEPFVNTMLELWKSWHLKHLKEKAKIAIDQGANVL 810
Query: 494 GCLDETRTL-NYGQVFVQISGAGY-RQLHGESSLFSS----SRSRQRFIVQGLVVVAKNP 547
G +DET L Y + + A Y +L +F + +++GL ++A+NP
Sbjct: 811 GVMDETGVLKGYFRKELPSRRASYAEKLAALPEIFVQVCRLDGGGEYEVIEGLCILARNP 870
Query: 548 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 607
LHPGD+RV++AVN LH + D VV PQ G + + CSG DLDGD Y V WD LIP
Sbjct: 871 SLHPGDIRVVRAVNRSELHALRDVVVLPQTGDQDIASMCSGGDLDGDDYLVIWDPNLIPA 930
Query: 608 QQ-DPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSE 666
MDY +++ LDHDV ++++ +F Y+ ND L IA+AH +ADR PR +
Sbjct: 931 NWFVECMDYKGSKAPDLDHDVTVDEITSFFVTYMKNDCLPRIAHAHLAWADRLPRGVWED 990
Query: 667 PCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDK---PTYESQNVIGKLFRA 723
C++LA+ S AVD+ K+G A + L K +P FMEK K Y+S ++G+L+ A
Sbjct: 991 KCIRLAQLHSDAVDYNKSGAHARMARSLDPKFWPHFMEKRFKRPSSIYKSTKILGQLYDA 1050
Query: 724 V--KDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYG 781
V D P + F + P E +++ A K +D + +M Y
Sbjct: 1051 VITPDFVPKLE--KPFDSRILESPLAPASEA-----YMEYARELKAEFDMNMRQIMAQYE 1103
Query: 782 IKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKAS 841
I TE E+ + +++ + E +G V LR+ R +K G D + A
Sbjct: 1104 INTEFEVWSTFVLRHGFVIKDYKMQEDLGRIVGTLRRGFRHQCYDKVGRDG-GNIPALVI 1162
Query: 842 AWYHVTYHPDYWGC---YNQGMNRDH------------FLSFPWCVYDRLVEI 879
A Y VT N+ + R+ +SFPW D L ++
Sbjct: 1163 AMYRVTQEQVAAALEARRNEALQREDVSIAEVNSTELPLISFPWIFPDVLGDV 1215
>gi|429860171|gb|ELA34917.1| suppressor of ascus dominance [Colletotrichum gloeosporioides Nara
gc5]
Length = 1353
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 257/763 (33%), Positives = 390/763 (51%), Gaps = 70/763 (9%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDL-DKIHSTDLSPRGSS 201
+ +V VTP+ VY+ P + SNRVLR F D FLR+ F DE KI+S
Sbjct: 522 IRKVVVTPTTVYYSSPGVESSNRVLRKFSEYQDRFLRVQFTDELYYGKIYSD-------- 573
Query: 202 ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 261
+ +++R+ TL GI IG R +EFLAF +SQ+RE + + F + IR+W
Sbjct: 574 ----SGEELFSRVYRTLAKGITIGSRHYEFLAFGNSQIRECAVYFFCPTDHRSCDCIRDW 629
Query: 262 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 321
MG+F I+NVAKYAAR+GQ FS+++E + I I DV+ + + FSDG+GK+S
Sbjct: 630 MGDFGHIKNVAKYAARIGQCFSTTREIPGTTVANIVPIEDVE----RNGFCFSDGVGKIS 685
Query: 322 AEFARKVASKCGLKD---NPPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKYESELT 377
A V + D + PSAFQ R GG KG++A P + ++ + +R S K+++
Sbjct: 686 QLLAHIVVVEMSSDDACISVPSAFQFRMGGCKGMLAVWPDAKRQEVHIRPSQEKFKATFN 745
Query: 378 KLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-E 436
L+++ ++++ LNRQ I++L++LG+ E K ++ + D + A L +
Sbjct: 746 GLEIIKYAQHSIATLNRQTITVLTSLGVRAETILKLAERQIKNYQKAMNDRVAAASLLGQ 805
Query: 437 LMSPGENTNILKELLICGY-KPD-AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMG 494
+ + +K+L+ G+ P+ EPF+ +L +R + L+ K R+ + ++G
Sbjct: 806 YIDENLTSLTIKDLVGWGFMDPEIQEPFVLTILDLWRIWSMKLLKEKARVIVEESAFLLG 865
Query: 495 CLDETRTL----------------NYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ 538
CLDET +L + QVF+Q+ S S S + V
Sbjct: 866 CLDETGSLRGYSTATEGKKTNNIEDLPQVFLQVE--------------SPSGSGKFTCVT 911
Query: 539 GLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 598
GL +V +NP LHPGD+RV++AV+VP LHH+ + VVFP+ G R P+ SG DLDGD +FV
Sbjct: 912 GLCIVGRNPSLHPGDLRVVEAVDVPQLHHLRNVVVFPRNGDRDVPSMMSGGDLDGDDFFV 971
Query: 599 CWDDELIPPQ-QDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFAD 657
W+ +LIP PPM+YT L DVQ++D+ +F Y+ NDSL +IA AH AD
Sbjct: 972 MWNQDLIPKDWHQPPMNYTQPTPAVLRRDVQVKDLRTFFVRYMQNDSLALIATAHLAHAD 1031
Query: 658 REPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVI 717
+ + + CLQLA S AVD+ KTG PA++PP L KE P F+ + TY S +
Sbjct: 1032 KSLLGVKDQKCLQLAALHSKAVDYVKTGDPAKLPPALNPKERPHFLGSRGQ-TYHSSTAL 1090
Query: 718 GKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLM 777
GKL+ ++D+ + + F V R + ED + A K YD + LM
Sbjct: 1091 GKLYDMIQDVGFNPLYEKRFDNRVLNR-------FNLTEDLLSKARAVKVQYDMAMRRLM 1143
Query: 778 DYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARA-WFKEKSGSDTEDDA 836
I TE EI TG + + + + E IG L+ R ++E GS D+
Sbjct: 1144 GQRDIDTEFEIWTGFALSKPRVGSDYKQQEEIGRESSLLKHRFREICYQEAGGSRVFDNI 1203
Query: 837 YAKASAWYHVTYHPDYWGCYNQGMNRDH------FLSFPWCVY 873
+A Y VT + + +H +SFPW +
Sbjct: 1204 GPFVAAMYKVTQDEVNAALAGEYEDEEHKRQSMPLISFPWIFH 1246
>gi|156035913|ref|XP_001586068.1| hypothetical protein SS1G_13161 [Sclerotinia sclerotiorum 1980]
gi|154698565|gb|EDN98303.1| hypothetical protein SS1G_13161 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1404
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 255/793 (32%), Positives = 409/793 (51%), Gaps = 54/793 (6%)
Query: 50 IALPYEILFKINLLVQNGCVAGPLLDSNF-YRLV-----DPYRAPVSISCIEHALDKLYH 103
+ LP+E+ +++ + + + +D F Y L DP +A + +E+ + Y
Sbjct: 364 VPLPFEVRYQLEVCISREIINEYNIDEKFIYSLAKVAAQDPAKAR---NLLEYVAEN-YS 419
Query: 104 LKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVS 163
K Y PS T+ +S + + + + VTPS +YF P + +
Sbjct: 420 SKRL-YNPSSIFTNNDALSFSSMT-------DIPHYCAFSRKATVTPSSIYFSSPTVETT 471
Query: 164 NRVLRHFRRDIDN--FLRISFIDEDLD-KIHSTDLSPRGSSATDITRTRIYTRILSTLRN 220
NRVLR++ ++ FLR+ F DE + +I++ A I ++TR+ + N
Sbjct: 472 NRVLRNYSKENKEGRFLRVQFTDEKAEGRINAC--------ADKIRNDGLFTRVFRVISN 523
Query: 221 GILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQ 280
GI IGDR +EFLAF +SQ RE+ A+ F L+ +IR+WMG F I VAKYAARLGQ
Sbjct: 524 GIRIGDRHYEFLAFGNSQFRENGAYFFCPPAYLSCDDIRQWMGTFSHINVVAKYAARLGQ 583
Query: 281 SFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN-PP 339
FS+++ + ++ IPD++ + Y F+DG+GK+S A+ +A + L+ N P
Sbjct: 584 CFSTTRAIRGLSAPDLVKIPDIE----RNGYCFTDGVGKISPFLAQMIAEELKLRTNSAP 639
Query: 340 SAFQIRYGGYKGVVAADPTS-SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLIS 398
SAFQ R GG KG++ P + + ++ +R S +K+ + L+++ S++ LNRQ I+
Sbjct: 640 SAFQFRLGGCKGILVVSPDAKNNEVHIRKSQQKFTAVYNGLEIIRCSQFSSATLNRQTIT 699
Query: 399 LLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI-LKELLICGYKP 457
+LS+LG+ DE+F E + +++ A L I + +++ G+
Sbjct: 700 ILSSLGVKDEVFLNMLSEQLSDYQNAMSNNTIALNLLNRYIDDNYMTINIASMILNGFMT 759
Query: 458 DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR 517
+ EPF+ +L +RA + L+ K +I + NG ++GC+DET TL G Y+
Sbjct: 760 EKEPFVLSLLHLWRAWSIKLLKEKAKIIVENGAFVLGCVDETNTLRGYTKPTVACGTTYK 819
Query: 518 QLHGESSLF---SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVF 574
+ + + Q +++G+ +V +NP LHPGD+RV++AVNVPALHH+ D VVF
Sbjct: 820 EDELPQIFIQVPNRENTGQYNVIEGICLVGRNPSLHPGDLRVVQAVNVPALHHLRDVVVF 879
Query: 575 PQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD-PPMDYTPAQSMQLDHDVQIEDVE 633
PQ G R P+ CSG DLDGD +FV WD L P + + PM Y + L V++ D+
Sbjct: 880 PQSGERDVPSMCSGGDLDGDDFFVIWDKNLQPSEWNCEPMSYAALAPVTLKRPVKVRDLL 939
Query: 634 EYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPH 693
++F Y+ NDSL IA+AH AD + CL+LAE S AVD+ KTG PA + +
Sbjct: 940 KFFVKYMKNDSLPTIAHAHLAQADLLGNGIKDPKCLELAELHSKAVDYVKTGQPANMSRY 999
Query: 694 LYVKEYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVAR--RSYDP 748
L +++P FMEK KP Y S ++G+L+ V+ + F K + R + +P
Sbjct: 1000 LAPQKWPHFMEKTHKPLSKQYHSTKILGQLYDKVESLHFVPQYEEPFDKRILRAYKLENP 1059
Query: 749 DMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEA 808
+E A K YD + ++ IKTE E+ + I+ K + + E
Sbjct: 1060 ILEA---------ARQTKTKYDTAMRRILAQQDIKTEFEVWSTFILSKPKVGSDYKLQEE 1110
Query: 809 IGMAVRALRKEAR 821
+ AL+ R
Sbjct: 1111 MASITGALKDRFR 1123
>gi|340521639|gb|EGR51873.1| predicted protein [Trichoderma reesei QM6a]
Length = 1161
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 252/723 (34%), Positives = 388/723 (53%), Gaps = 45/723 (6%)
Query: 141 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 200
V + VTP+ + P + SNRVLR+F D FLR+ F++E T+
Sbjct: 338 VLARKAAVTPTTILLSTPVVETSNRVLRYFNHIQDRFLRVQFVEE-------TEFGRMAM 390
Query: 201 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIRE 260
S + + ++ +IL TL GI IGDR ++FLAF SSQLR+ A+ F ++ +IR
Sbjct: 391 SCRN--KEDVWKKILRTLYQGIQIGDRHYQFLAFGSSQLRQCGAYFFCPTDHISCDDIRR 448
Query: 261 WMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKV 320
WMG IR VAKYAARLGQ FS+++E + + ++ IPDV+ + Y F+DG+G +
Sbjct: 449 WMGEVGHIRIVAKYAARLGQCFSTTREMRGLPIPDVRSIPDVE----RNGYCFTDGVGII 504
Query: 321 SAEFARKVASKCGLKD-NPPSAFQIRYGGYKGVVAADPTSSK-KLSLRDSMRKYESELTK 378
S A+ + + L PSAFQ R GG KGV+ P ++K ++ +R S K+++E+
Sbjct: 505 SDFMAQMIMEELTLDVYAEPSAFQFRMGGCKGVLVVWPQATKGEVCIRQSQEKFKAEVKN 564
Query: 379 LDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELM 438
L+++ +KY LNRQ I++L LG+ + F E +R + + K A+E++
Sbjct: 565 LEIIKCAKYSSATLNRQTITILECLGVTKKAFLDILEEQIRLYEEAMG---KNDVAIEML 621
Query: 439 S----PGENTNILKELLICGYKPD--AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 492
+ ++T IL ELL G+K D EPF++ +L +R+ L L+ K RI + +
Sbjct: 622 TNCVDENQSTLILAELLQAGFKTDKVQEPFVANLLSLWRSWSLKLLKEKARIPVDKSAFV 681
Query: 493 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLF----SSSRSRQRFIVQGLVVVAKNPC 548
+GC+DET TL G F+ G+ + + +F S + +V+GL VV +NP
Sbjct: 682 LGCVDETSTLR-GH-FIATEGSSDKDISKLPQIFLQVSDSKIYNKTHVVKGLCVVGRNPS 739
Query: 549 LHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP- 607
LHPGD+RV++AV++P LHH+ D VVFP G RP PN SG DLDGD +FV W+ L+P
Sbjct: 740 LHPGDIRVVEAVDIPGLHHLKDVVVFPSTGDRPVPNMLSGGDLDGDDFFVIWEPTLLPEI 799
Query: 608 QQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEP 667
P M+YT LD +V ++D+ ++F Y+ ND L +IA AH ADR S+
Sbjct: 800 WNHPAMNYTSPSPETLDREVNVDDLRDFFVKYMKNDVLPLIATAHLALADR--LGPLSKI 857
Query: 668 CLQLAEKFSIAVDFPKTGVPAEIPPHLY-VKEYPDFMEKPDKPTYESQNVIGKLFRAVKD 726
CL LA+ S AVD+PKTG PAE ++ +++P FMEK K +Y S +G ++ VK
Sbjct: 858 CLHLADLHSQAVDYPKTGQPAEWNAAMHNPQQWPHFMEK--KNSYISPKALGDIYNRVKQ 915
Query: 727 --IAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKT 784
I F + + R ++PD + DA K YD + ++ ++ ++T
Sbjct: 916 QSIQFQPDWETAFDRRILDR-FEPDNAT------LRDARRIKSQYDGAVRRILVHHNLET 968
Query: 785 EAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWY 844
E E+ T M ++ + E +G A+++ R E +G E +A Y
Sbjct: 969 EFELYTSWAMSKPPLGSEYKRQEDLGKEFDAVKQRFRDACIEAAGGHDEAKIDRFVAAMY 1028
Query: 845 HVT 847
+T
Sbjct: 1029 KIT 1031
>gi|340975703|gb|EGS22818.1| RNA-directed RNA polymerase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 1626
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 274/857 (31%), Positives = 437/857 (50%), Gaps = 101/857 (11%)
Query: 26 FVLETGSAYSRSL---DLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFY--- 79
LE +A S SL DLV ++G P +LP++I +++ + + G + + F
Sbjct: 457 MTLEAPAASSNSLCFSDLV-LLGFPTNTSLPFDIRYQLEVCLSRGVLCEYNITQEFLDKL 515
Query: 80 -RLVDPYRAPVSIS--CIEHALDKLYHLKECCYEPSRWLTDQYRKYM--TSRSKPSSPAI 134
L P VS + +E+A D+ + ++P +DQ T+ PS A+
Sbjct: 516 LELSKPDGMEVSRARLILEYAADQGKRI----WDPMSLFSDQAALSYCPTTLHIPSHCAL 571
Query: 135 SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD-KIHST 193
V +V +TP+R+YF P + +NRV+RH+ R D F+R+ F DE ++ +I S
Sbjct: 572 --------VRKVTITPTRIYFSTPTVETTNRVVRHYGRFRDYFIRVQFTDEVMEGRIRS- 622
Query: 194 DLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----S 249
S TD +Y R+ LR+GI +G ++FLA+ +SQ+RE ++ F +
Sbjct: 623 -------SYTD-REDNVYARVFRVLRHGIRMGKWHWKFLAYGNSQIRECGSFFFCEPEEA 674
Query: 250 RYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKT 309
+T IREWMG F I+++AK AARLGQ FS+++ + I DV+ +
Sbjct: 675 HGTITCDSIREWMGRFSHIKSIAKLAARLGQCFSTTRPLPGITAPTIIKTQDVE----RN 730
Query: 310 KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS-SKKLSLRDS 368
Y F+DG+GK+S A +A + P SAFQ R GG KGV+ P + ++ +R S
Sbjct: 731 GYCFTDGVGKISPLLAFFIAEDWKVYPTP-SAFQFRMGGCKGVLVTWPDAKGTEVHIRPS 789
Query: 369 MRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 428
K+ +E L+++ S + LNRQ I++LS LG+ +F E + DA + DP
Sbjct: 790 QEKFSAEFNGLEIIRCSHFSCATLNRQTITILSCLGVPSYVFLDMMEEQLANYDAAMEDP 849
Query: 429 LKAQEALEL-MSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 487
KA + L + T + E+++ G+ EPF+ +LQ +RA + L+ K R+ +
Sbjct: 850 DKAIDLLTTYVDENMTTLTMSEMVLDGFMETREPFVRSLLQLWRAWSIKALKEKARLVVK 909
Query: 488 NGRSMMGCLDETRTL--------------------NYGQVFVQI----SGAGYRQLHGES 523
G ++GC+DET TL Q+F+Q+ +G Y+
Sbjct: 910 KGAFVLGCVDETGTLRGHSRATEGTKNQPKEVRRDQLPQIFLQVPDHENGGTYK------ 963
Query: 524 SLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHP 583
++ GL +V +NP LHPGD+R+++AV+VP L H+ D VVFP +G R P
Sbjct: 964 ------------VITGLCLVGRNPSLHPGDIRMVEAVDVPQLRHLRDVVVFPLQGDRDVP 1011
Query: 584 NECSGSDLDGDIYFVCWDDELIPPQQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVN 642
+ CSG DLDGD YFV WD++L P + PPM+Y ++ + + ++ E+F ++ N
Sbjct: 1012 SMCSGGDLDGDDYFVIWDEKLFPKEWSYPPMNYEAPKAPEEKEVMVANNLAEFFVLFMKN 1071
Query: 643 DSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDF 702
D L +IA+AH AD+ P A++E CL+LA+ S AVD+ KTGV A+ L + YP F
Sbjct: 1072 DRLPLIAHAHLATADKHPEGAKTEKCLELAQLHSTAVDYVKTGVAAKWEKRLDPRTYPHF 1131
Query: 703 MEKPDKPTYESQNVIGKLF----RAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDH 758
MEK TY S++V+G+L+ R V DI + F + + +R Y+ + +D
Sbjct: 1132 MEKSRARTYYSKSVLGQLYDMVERQVFDIQENYKLP--FDERIIKR-YELN------DDL 1182
Query: 759 IDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRK 818
+ A K YD + +M I+TE E+ T +M + T + E +G L+K
Sbjct: 1183 LRQARKLKSQYDIAMRRIMGQLEIRTEFEVWTAFVMSKPRVGTDYKVQEKVGREAACLKK 1242
Query: 819 EARAWFKEKSGSDTEDD 835
+ R + +G+ D
Sbjct: 1243 QFRDLCLKAAGASDRGD 1259
>gi|361125379|gb|EHK97425.1| putative RNA-dependent RNA polymerase 1 [Glarea lozoyensis 74030]
Length = 1213
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 262/812 (32%), Positives = 415/812 (51%), Gaps = 76/812 (9%)
Query: 50 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 109
I+LP+E+ +++ + + + LD F + A S + L+ + + Y
Sbjct: 162 ISLPFEVRYQLEVCISRELLNEYNLDREFIEKLAEL-AKSDASTARNILEYVAENDKRIY 220
Query: 110 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGL----VYVHRVQVTPSRVYFCGPEINVSNR 165
EP + P + A S+ + Y + +TPS + F P + +NR
Sbjct: 221 EPLHLF-----------NSPEALAFSVKTDIPHYCAYSRKATITPSTILFSSPTVETTNR 269
Query: 166 VLRHFRRDIDN--FLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGIL 223
VLRH+ R+ + FLR+ F DE + + +S I+TR+ TL NGI
Sbjct: 270 VLRHYSRENHDGRFLRVQFTDESFEG--------KINSCVKQRNDEIFTRVYRTLANGIR 321
Query: 224 IGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFS 283
IGDR ++FLAF +SQ RE+ A+ F LT +IR+WMGNF I AKYAARLGQ FS
Sbjct: 322 IGDRHYKFLAFGNSQFRENGAYFFCEDEHLTCNDIRDWMGNFTHINVPAKYAARLGQCFS 381
Query: 284 SSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK-DNPPSAF 342
+++ + I IPD IE GK Y +SDG+GK+S A+ + ++ GL + PSAF
Sbjct: 382 TTRAINGLSAPTIVTIPD--IEHGK--YTYSDGVGKISPFLAQMITAELGLHVAHEPSAF 437
Query: 343 QIRYGGYKGVVAADPTSS-KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLS 401
Q R GG KG++ P + +++ +R S +K+ + L+++ S+Y LNRQ I+LLS
Sbjct: 438 QFRLGGCKGILVTWPDAKDREVHIRKSQQKFTAVYNGLEIIRCSQYSCATLNRQTITLLS 497
Query: 402 TLGIWDEIFEKKQREAVRQL-DAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAE 460
LG+ D +F K +E + +A+ D L + + T + +++ K +
Sbjct: 498 NLGVGDGVFLKMMKEQLSGYQNAMENDNLAIELLCRFIDDNRMTINIAKMISSDIK---D 554
Query: 461 PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL----------------NY 504
PF+S +L +R+ + L+ K +I + G + GC+DET TL
Sbjct: 555 PFVSSLLHLWRSWSIKLLKEKAKIVVEKGAFVFGCVDETHTLRGYKAPSTEGDAIPEEQL 614
Query: 505 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 564
Q+F+Q+ +HG ++ +++G+ +V +NP LHPGD+R+ +A++VPA
Sbjct: 615 PQIFIQVP------VHG-----CDPKNPVYNVIEGICLVGRNPSLHPGDLRICQAIDVPA 663
Query: 565 LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD-PPMDYTPAQSMQL 623
LHH+ D VVFP G R P+ CSG DLDGD YFV WD +L P + + PMDY +
Sbjct: 664 LHHLRDVVVFPSCGDRDVPSMCSGGDLDGDDYFVIWDKDLQPHEWNCSPMDYDAPPAKSQ 723
Query: 624 DHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPK 683
+ V ++D+ ++F Y+ NDSL IA+AH AD+ P A++ C+QLA S AVD+ K
Sbjct: 724 RNPVAVKDLMQHFVRYMKNDSLPQIAHAHLAQADQLPGGAKNPKCIQLAHLHSKAVDYVK 783
Query: 684 TGVPAEIPPHLYVKEYPDFMEKPDK---PTYESQNVIGKLFRAVKDIAPHTSCIRLFTKE 740
+G AE+P L + +P FMEK K YES ++G+L+ V+ I F +
Sbjct: 784 SGHAAEMPKDLQPRRWPHFMEKRHKRKDQLYESTTILGQLYNQVERINFLPQWKVPFDRR 843
Query: 741 VARRSYDPDMEVDGFED-HIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKS 799
+ + FED + A K YD + +M IKTE E+ + ++ +
Sbjct: 844 I--------LTAYKFEDAALKKARQLKSKYDVHMRRIMAQQEIKTEFEVWSTFVLSKPRV 895
Query: 800 FTKRRDAEAIGMAVRALRKEARAWFKEKSGSD 831
+ + E +G L+++ RA E +G +
Sbjct: 896 GSDYKLGEEMGRISEGLKEQFRALVIEYAGKE 927
>gi|325088329|gb|EGC41639.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
Length = 1522
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 266/875 (30%), Positives = 428/875 (48%), Gaps = 147/875 (16%)
Query: 50 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH-ALDKLYHLKECC 108
I LP+ + +++ + + GC+ +LD F + + +EH A++K +
Sbjct: 529 IPLPFTVRYQLEVCISQGCLNEYILDETFVLQLAQLGEKKAKELLEHVAMNKAVY----- 583
Query: 109 YEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLR 168
Y P + +T P + Y+ +TPS +++ P ++ SNRV R
Sbjct: 584 YSPMEIFDIPFPDGVTHGRIP--------EHCCYMRSADITPSTIHYDIPSVDTSNRVFR 635
Query: 169 HFRRDIDNFLRISFIDED-LDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDR 227
+ R D FLR+ F DE + +I+S S+ ++ + +Y R+ L++GI+IGDR
Sbjct: 636 YHREHADRFLRVRFCDEKYMGRIYSN------SNGNNLCMSEVYARVTRILQHGIIIGDR 689
Query: 228 KFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKE 287
+EFLAF +SQ RE A+ FAS LTAA IR MG+ I+ VAKYAARLGQ FS+++
Sbjct: 690 HYEFLAFGNSQFREHGAFFFASLPHLTAANIRAQMGDLNNIKVVAKYAARLGQCFSTTRA 749
Query: 288 TLS--VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD---NPPSAF 342
S V + E++ +I + YVFSDG+G++S + + S G+ PPSAF
Sbjct: 750 VTSCPVQLKEVD-------DIERNGYVFSDGVGRLSHFLTQMIRSDLGINTPSGQPPSAF 802
Query: 343 QIRYGGYKGVVAADPTS-SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLS 401
Q R GG KG++A + +++ +R S K+ + L+++ S + LNRQLI +LS
Sbjct: 803 QFRLGGCKGILAVSSDAHGQEVHIRKSQYKFAAAHHGLEIIRHSHFSLATLNRQLILVLS 862
Query: 402 TLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL-MSPGENTNILKELLICGYKPDAE 460
LG+ D++F K R + +L+ +T+ +A L+ + P + T IL +++ G++ E
Sbjct: 863 CLGVPDKVFIAKLRMMMDKLEQAMTNEEQAVHLLQTHVDPNQMTLILADMVRDGFQGSKE 922
Query: 461 PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN----------------- 503
PF+S +L+ +R ++ L+ K +I + G ++GC+DET+TL
Sbjct: 923 PFVSSLLELWRTWQIKYLKEKAKIAVDEGAFLLGCIDETKTLKGYFRSSRPGQDATYEER 982
Query: 504 ---YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAV 560
++FVQ+ +R G + I++G+ ++A+NP LHPGD+RV+KAV
Sbjct: 983 VACLPEIFVQV----WRHSEG-----------KYVIIEGVCILARNPSLHPGDIRVVKAV 1027
Query: 561 NVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ-DPPMDYTPAQ 619
N P+LHH+ D VV PQ G R + CSG DLDGD Y V WD +++P PMDY +
Sbjct: 1028 NAPSLHHLRDVVVLPQTGDRDISSMCSGGDLDGDDYVVIWDQDILPTDWFHDPMDYAAPK 1087
Query: 620 SMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAV 679
LD DV ++D+ +++ NY+ ND L IA AH AD ++E CLQLA S AV
Sbjct: 1088 PEVLDRDVTVDDITKFYVNYMQNDRLPQIALAHLALADYMEEGVKNEKCLQLAALHSAAV 1147
Query: 680 DFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTK 739
D+ K+G+P ++ +++ P + L T+
Sbjct: 1148 DYNKSGIPVKL---------------------------------TRNLKPRSFATNLKTQ 1174
Query: 740 EVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKS 799
YD DM +M + IKTE E+ + ++ S+
Sbjct: 1175 ------YDADMR-----------------------RIMAQHEIKTELEVWSTFVLSHSEM 1205
Query: 800 FTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGC---- 855
+ E IG +LR++ R EK+G + A A Y VT + W
Sbjct: 1206 IKDYKFHEDIGRISSSLREKFRIMCHEKAGGKEFEHLAPLAVAMYKVT--SEQWEIAVAV 1263
Query: 856 -YNQGMNRDHF-------LSFPWCVYDRLVEIKKD 882
++ ++ HF +SFPW + L I +
Sbjct: 1264 QHDVFIDNSHFQERKLPLISFPWVLQPILGRIANE 1298
>gi|18656898|gb|AAL78034.1|AF468822_2 putative RNA-dependent RNA polymerase RDP-1 [Diaporthe perjuncta]
Length = 1484
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 245/716 (34%), Positives = 384/716 (53%), Gaps = 35/716 (4%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE-DLDKIHSTDLSPRGSS 201
V R +TP+ +YF P + ++NR+LR + D FLR+ F DE KI S+ S + +
Sbjct: 552 VRRAVITPTTIYFKTPCVELTNRILRKYSDLNDRFLRVQFTDEVTFGKIFSSQDSNKDDN 611
Query: 202 ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 261
+YTR+ ++NG++IGDR ++FLAFS+SQ RE+ A+ F +T A IR W
Sbjct: 612 --------LYTRVHRVMQNGVIIGDRHYKFLAFSNSQFRENGAFFFCETDHVTCASIRNW 663
Query: 262 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 321
MG+FR IR+V K+AAR+GQ F+++++ + + +I I D++ G + F+DG+GK+S
Sbjct: 664 MGDFRHIRSVGKFAARMGQCFTTTRQVNGISIPKIRQIGDIQRRSGDNIWNFTDGVGKIS 723
Query: 322 AEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELTKLD 380
FAR +AS+ L + PS FQ+R GG KGVV P + ++ +R S K+++ L+
Sbjct: 724 VFFARMIASERDLPET-PSCFQMRMGGCKGVVVVWPDIPANEVHIRPSQEKFKAVYNGLE 782
Query: 381 VLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSP 440
++ S + LN+Q+I +L LG+ D +F + + +++ D L D +KA E L
Sbjct: 783 IIKTSTFAHATLNKQVIPVLIALGVDDAVFVRMLDDELKEYDEALADSMKAGELLRSQVD 842
Query: 441 GENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETR 500
T + ++ + EPFL +L+ ++ L L+ K I + N + G +DET
Sbjct: 843 ENQTTLTMAEMVDTFMDSEEPFLWTLLRLWKCWVLKRLKQKFAISVKNSAMIFGVVDETG 902
Query: 501 TL-NYGQVFVQISGAGYRQLHGESSLF-------SSSRSRQRF-IVQGLVVVAKNPCLHP 551
L + Q G G+ + +F S +S + ++ G+ VV +NP LHP
Sbjct: 903 VLRGHSQ---DTEGKGFNNIESLPQIFLQVPIEGSDGKSTTNYEVITGICVVGRNPALHP 959
Query: 552 GDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD- 610
GDVRV++AV+VP L H+ + VVFP+ G R P+ CSG D+DGD YFV WD+ LIP + D
Sbjct: 960 GDVRVVEAVDVPELRHLKNVVVFPKTGDRDVPSMCSGGDMDGDDYFVYWDERLIPSEWDH 1019
Query: 611 PPMDYTPAQSM-QLDH--DVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEP 667
PP+D+ S LD DV DV +F Y+ NDSLG IA AH AD+ +
Sbjct: 1020 PPLDHDADSSTPGLDSPADVTNGDVTRFFAQYMKNDSLGRIATAHFAQADQLAGGVKHPK 1079
Query: 668 CLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDI 727
C++LA+ S AVD+ K+G PA + HL + +P +ME+ K +Y S+ +G+++ +K
Sbjct: 1080 CIELAKLHSKAVDYIKSGKPAVMKRHLQPRNWPHWMERDKKSSYHSRGALGQIYDRIKIE 1139
Query: 728 APHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIK-TEA 786
H + F + R Y + ED + A K YD + L + TE
Sbjct: 1140 EFHAAYEMSFDTRILSR-YQLE------EDTLAKASEIKAAYDIAMRRLTGQHEAPVTEF 1192
Query: 787 EILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASA 842
EI + I+ + + + E +G + AL+ RA E D + A AS+
Sbjct: 1193 EIWSTFILTKPRVGSDYKLQENVGREMAALKARFRAVCMEAVTGDEQTPTCASASS 1248
>gi|452987327|gb|EME87083.1| hypothetical protein MYCFIDRAFT_202751 [Pseudocercospora fijiensis
CIRAD86]
Length = 1276
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 273/816 (33%), Positives = 410/816 (50%), Gaps = 62/816 (7%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 111
LP+++ +++ + + G + +D +F + + A + ++ L+K+ KE YEP
Sbjct: 235 LPFKLRYQLEVCLSLGLLLECNIDRDFLKRL----AEMDLTRAVKVLEKVADNKERVYEP 290
Query: 112 SRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFR 171
Q + + ++ KP D + V VTPS +Y SNRV+R F+
Sbjct: 291 MTIFRLQNQVSVVTKKKP--------DYCTEIGSVVVTPSTIYAATMVRETSNRVIRQFK 342
Query: 172 RDIDNFLRISFIDEDLD-KIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFE 230
D FLR+ F DE KI S+D D +++RI T+ +GI IGDR +E
Sbjct: 343 DYEDRFLRVKFTDERYKGKIWSSD---------DNRMNEVFSRIKRTMTHGIQIGDRHYE 393
Query: 231 FLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLS 290
FLAF +SQ RE A+ FA LTA IREWMG F IR +AKY +RLGQ FS+++
Sbjct: 394 FLAFGNSQFREHGAYFFAPTEKLTAEMIREWMGRFSHIRVIAKYVSRLGQCFSTTRAIPH 453
Query: 291 VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL---KDNPPSAFQIRYG 347
++++ V IE + Y F+DG G +S AR +A + ++N PSA Q R
Sbjct: 454 ----KVDLGRSVDIE--RNGYCFTDGAGTMSPFLARMIALHHNVPNSEENFPSAVQFRLA 507
Query: 348 GYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIW 406
G KGV+A DP + +R S K+ +E L++ S++ LN Q+I +LS LGI
Sbjct: 508 GCKGVLAVDPALKGFAIQIRPSQEKFPAEYHGLEICRISQFSTANLNMQIILVLSALGID 567
Query: 407 DEIFEKKQREAVRQLDAILTDPLKAQEALEL-MSPGENTNILKELLICGYKPDAEPFLSM 465
DE+F K R + + ++D KA E L+ + + T +L ++ G+ +PF+
Sbjct: 568 DEVFLGKMRAMLVDIKEAMSDERKALELLQKNIDYSQTTILLATMIFDGFMETKDPFMIT 627
Query: 466 MLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL--NYGQ-VFVQISGAGYRQLH-- 520
L+ +R+ L L+ K RI++ G + DET TL +Y + V A H
Sbjct: 628 CLRLWRSWCLKYLKEKARIYVEQGFFGLAVPDETGTLRGHYDKPVSADSDNADTSDEHDA 687
Query: 521 GESSLFSSSRSRQRF-------------IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH 567
G + S + F ++ + ++A+NP LHPGDVR ++AV+ P LHH
Sbjct: 688 GSDEIASDEDLPEIFLQVPDPDAPGKYRVILSICILARNPSLHPGDVRKVRAVDKPELHH 747
Query: 568 MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIP-PQQDPPMDYTPAQSMQLDHD 626
+ D VV P G R N CSG DLDGD + V WD IP PPMDYT + D
Sbjct: 748 LRDVVVIPTTGDRDLANMCSGGDLDGDDFMVIWDPNFIPHGASHPPMDYTSPDPVTSDGP 807
Query: 627 VQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGV 686
V ++D+ +F +I ND+L IA AH +AD+ + C++LA+ S AVD+PKTGV
Sbjct: 808 VSVDDMTTFFVKHIKNDNLSSIAVAHRYWADQLADGVKDAKCIELAQLHSKAVDYPKTGV 867
Query: 687 PAEIPPHLYVKEYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVAR 743
PA + P L V+++P + E +K Y S V+GKL+ VK H + F + +
Sbjct: 868 PAVMTPGLKVQKWPHWSEPKNKSKSKIYHSNRVLGKLYDEVKKEPFHAAWDLPFDQRILT 927
Query: 744 RSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKR 803
D + DA K YD + +M +GIKTE EI T ++ +
Sbjct: 928 ACEPSDR-------MLADAREVKAEYDEAIQRIMTQHGIKTEFEIWTTFVLDHHQEIGDY 980
Query: 804 RDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAK 839
+ +E IG V AL +E R KEK+G + + AK
Sbjct: 981 KFSETIGAIVTALVEEHRERCKEKAGIKSSNKEAAK 1016
>gi|452837097|gb|EME39040.1| hypothetical protein DOTSEDRAFT_110589, partial [Dothistroma
septosporum NZE10]
Length = 1155
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 266/828 (32%), Positives = 423/828 (51%), Gaps = 79/828 (9%)
Query: 50 IALPYEILFKINLLVQNGCVAGPLLDSNFYR---LVDPYRAPVSISCIEHALDKLYHLKE 106
+ LP+ + +++ + + G + + +F + ++P RA L+K+ ++
Sbjct: 326 VQLPFALRYQLEVCLSIGVLHEVNMSQDFLKRLAAMEPERAV-------KVLEKIADGRQ 378
Query: 107 CCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRV 166
Y+P L Q + + + +P+ + V VTPS ++F P + SNRV
Sbjct: 379 RYYDPYEILRLQSQVSVVEKKRPAY--------CTKIPAVTVTPSTLHFATPVLETSNRV 430
Query: 167 LRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGD 226
+R +++ D FLR+ F DE +H + P+ D + + +++RI + +G+ IGD
Sbjct: 431 VRQYQQYQDRFLRVKFRDE----LHKGKIFPQD----DHSESEVFSRISRAMTHGVKIGD 482
Query: 227 RKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSK 286
R +EFLAF SSQ RE A+ FAS LTAA+IR+WMGNF I+ VAKY ARLGQ FS+++
Sbjct: 483 RIYEFLAFGSSQFREHGAYFFASTAALTAADIRKWMGNFTHIKVVAKYCARLGQCFSTTR 542
Query: 287 ETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL---KDNPPSAFQ 343
H IE I D++ + + F+DG GK+S AR +A GL D+ PSAFQ
Sbjct: 543 SI--PHAVNIETISDIE----RNGHCFTDGSGKISPFLARLIAHHYGLPNSDDDHPSAFQ 596
Query: 344 IRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLST 402
R G KGV++ DP + +R S +K+ +E L++ S+Y +LN Q+I +LS
Sbjct: 597 FRLAGCKGVLSVDPALRGLTIQIRPSQQKFAAEAFGLEICRISQYSAAYLNMQIILVLSA 656
Query: 403 LGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL-MSPGENTNILKELLICGYKPDAEP 461
LG+ DE+F + R ++ D + KA L+ + + T L +++ G+ +P
Sbjct: 657 LGVPDEVFIARVRTMLKDFDEAMKSEDKALILLQKNIDYNQMTLTLASMIMDGFMETKDP 716
Query: 462 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL-----------------NY 504
F + L+ +RA L L+ K R+ + G + DET L +
Sbjct: 717 FTTTCLRLWRAWSLKYLKEKARVLVEEGFFGIASPDETGILRGYSDDSPSVDEVQKDGDL 776
Query: 505 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 564
++F+QI + ++ G+ +A+NP LHPGDVRV++AV+VP
Sbjct: 777 PEIFLQIP--------------DPDTPGKYIVLLGVCALARNPSLHPGDVRVVRAVDVPE 822
Query: 565 LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD-PPMDYTPAQSMQL 623
LHH + V+ P G RP N CSG DLDGD + V WD +LIPP+++ PMDYT
Sbjct: 823 LHHKKNEVILPITGDRPLANMCSGGDLDGDDFMVIWDKDLIPPERNHEPMDYTSPTPATS 882
Query: 624 DHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPK 683
+ V + D+ +F NYI ND+L IA AH +AD + + CL LA S+AVD+ K
Sbjct: 883 EGVVTVADMSRFFVNYIKNDNLARIATAHRYWADWQDDGVKDPKCLALANLHSMAVDYVK 942
Query: 684 TGVPAEIPPHLYVKEYPDFME---KPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKE 740
TGVPA +P L VK +P + E K + Y S+ V+G+L+ VK + + F
Sbjct: 943 TGVPAYMPADLKVKMWPHWSEPKGKSKRKVYTSKKVLGQLYDEVKRESVVAAWDMPFDDR 1002
Query: 741 VARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSF 800
+ D E +DDA K YD + M +GIKTE E+ T +++ +
Sbjct: 1003 ILS-------ACDPTESMLDDAREIKALYDEAVRRAMAQHGIKTEFEVFTTFVLEHHQDI 1055
Query: 801 TKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTY 848
+ AE +G LR++ + E++G+D++ + + ++ Y
Sbjct: 1056 NDYKFAETMGEVASNLRQQHQELCYERAGTDSKSRDWERMRSFLVAMY 1103
>gi|17227102|gb|AAL38011.1|AF443073_1 putative RNA-dependent RNA polymerase [Phomopsis sp. CMW 5588]
Length = 1122
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 254/776 (32%), Positives = 399/776 (51%), Gaps = 59/776 (7%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE-DLDKIHSTDLSPRGSS 201
V R +TP+ +YF P + ++NR+LR + D FLR+ F DE KI S+ S + +
Sbjct: 172 VRRAVITPTTIYFKTPCVELTNRILRKYSDLNDRFLRVQFTDEITFGKIFSSQDSNKDDN 231
Query: 202 ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 261
+Y R+ ++NGI IGDR + FLAFS+SQ RE+ A+ F +T IREW
Sbjct: 232 --------LYIRVHRVMQNGISIGDRHYRFLAFSNSQFRENGAFFFCETDHVTCDSIREW 283
Query: 262 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 321
MG+FR IR+V K+AAR+GQ F+++++ + + I I D++ + G + F+DG+GK+S
Sbjct: 284 MGDFRHIRSVGKFAARMGQCFTTTRQVNGISIPNIRKIDDIERQTGDHTWNFTDGVGKIS 343
Query: 322 AEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELTKLD 380
FA+ +AS+ L + PS FQ+R GG KGV+ P ++ +R S K+++ L+
Sbjct: 344 NFFAKLIASERDLPET-PSCFQMRIGGGKGVLVVWPDVPPSEVHVRPSQEKFKAVYNVLE 402
Query: 381 VLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSP 440
++ + N+Q+I +L LG+ + +F + +R+ D L D +KA E L
Sbjct: 403 IIKTFAFSHATFNKQVIPVLVALGVDNSVFVSMLDDELREYDEALADSMKAGELLRSQVD 462
Query: 441 GENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETR 500
T + ++ + EPFL +L+ ++ L L+ K I + + G +DE
Sbjct: 463 ENQTTLTMAEMVDTFMDSKEPFLWTLLRLWKCWILKRLKHKFAISVKKSAMVFGVVDEIG 522
Query: 501 TL-NYGQVFVQISGAGYRQLHGESSLF-------SSSRSRQRF-IVQGLVVVAKNPCLHP 551
L + Q G GY + +F S RS + ++ G+ VV +NP LHP
Sbjct: 523 VLRGHSQA---TEGRGYNSIESLPQIFLQVPIEGSDGRSTTNYEVITGICVVGRNPSLHP 579
Query: 552 GDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD- 610
GDVRV++AV+VP L H+ + VVFP+ G R P+ CSG D+DGD YFV WD+ LIP + D
Sbjct: 580 GDVRVVEAVDVPELRHLKNVVVFPKTGDRDIPSMCSGGDMDGDDYFVYWDERLIPTEWDH 639
Query: 611 PPMDYTPAQSMQLDH--DVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPC 668
PP+++ A S LD DV IEDV +F Y+ NDSLG IA AH AD+ ++ C
Sbjct: 640 PPLNHD-AGSSTLDKPADVTIEDVTRFFAQYMKNDSLGRIATAHFAQADQLSGGVKNPKC 698
Query: 669 LQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIA 728
++LA+ S+AVD+ K+G PA + HL +++P +MEK K Y S + +GK++ +K
Sbjct: 699 IELAKLHSMAVDYIKSGRPAVMKRHLQPRKWPHWMEKEKKSNYRSYSALGKIYDRIKIEE 758
Query: 729 PHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIK-TEAE 787
H + F + R +E D + A K YD + LM + TE E
Sbjct: 759 FHAAYEMPFDARILSRY---QLEADT----LAKASKIKATYDIAMRRLMGQHEAPVTEFE 811
Query: 788 ILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKAS------ 841
I + I+ + + + E +G + AL+ RA E + + + +A AS
Sbjct: 812 IWSTFILSRPRVGSDYKLQENVGRELAALKLRFRAECMEAVTGNIQTEGFAPASSVVNLE 871
Query: 842 -------AWYHVTYHPDYWGCYNQGMNRDH-----------FLSFPWCVYDRLVEI 879
A Y VT++ + M + + +SFPW + L +
Sbjct: 872 KLDRFVAAMYTVTHNDVRAALRERSMPKPNGEGGSEEIQMPLISFPWLFHRELARV 927
>gi|396468594|ref|XP_003838211.1| hypothetical protein LEMA_P117350.1 [Leptosphaeria maculans JN3]
gi|312214778|emb|CBX94732.1| hypothetical protein LEMA_P117350.1 [Leptosphaeria maculans JN3]
Length = 1004
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 255/829 (30%), Positives = 422/829 (50%), Gaps = 66/829 (7%)
Query: 96 HALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYF 155
H L+++ + YEP + + R + + + D V V +TP+ +Y
Sbjct: 8 HILERVVDKQHVYYEPMDVFSLKIRGSLKRK---------VPDYCVLQRSVVITPTMMYV 58
Query: 156 CGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRIL 215
P + SNR+ R + D D F+R+ F DE + + R + +++R+
Sbjct: 59 ASPLMETSNRITRKYAADADRFIRVKFSDEKNEGVLRNMPGNRAEA--------VFSRVH 110
Query: 216 STLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYA 275
+ G+++ R +EFLAF +SQ RE A+ +A +A +IR +G F I+ VAK+
Sbjct: 111 HAMTQGVVVAGRYYEFLAFGNSQFREHGAYFYAPTSSKSADDIRISLGKFDHIKTVAKFG 170
Query: 276 ARLGQSFSSSKETL-SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL 334
AR+GQ FS++++ SV + EI+ ++ + + F+DG+GK+S A+ A + GL
Sbjct: 171 ARIGQCFSTTRKMRNSVILQEID-------DVERNGHTFTDGVGKLSLFIAQMAAKELGL 223
Query: 335 K---DNPPSAFQIRYGGYKGVVAADPTSSK-KLSLRDSMRKYESELTKLDVLAWSKYQPC 390
D+PP+ FQ R GGYKGV+A DP+ K ++ +R S K+ +E + L+++ S
Sbjct: 224 PNPFDDPPTLFQFRLGGYKGVLALDPSIQKSEVHVRPSQHKFVAEYSGLEIIRSSALATP 283
Query: 391 FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP-LKAQEALELMSPGENTNILKE 449
F NRQ+I +LS LG+ D +F +KQ+ V + ++D + Q+ + + + T +
Sbjct: 284 FFNRQIIMVLSNLGVSDHVFIRKQQNMVNDYENAMSDEQIAVQKLRKHIDMNQTTLTMAG 343
Query: 450 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL--NYGQV 507
+++ G+ EPF+ +L +R+ + L+ K RI + +G ++GC+DE+ L +
Sbjct: 344 MVLDGFMKSQEPFVMSLLMLWRSHTIKNLKEKARIAVEDGAFVLGCVDESALLKGHMDDP 403
Query: 508 FVQISGAGYRQLHGESSLF----SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP 563
++ +L +F +++ I++GL V+A+NP LHPGD+RV++AV++P
Sbjct: 404 QSRLDATRDEKLATLPEIFMQVDDTTKPGHYKIIEGLCVLARNPSLHPGDLRVVRAVDIP 463
Query: 564 ALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD-PPMDYTPAQSMQ 622
AL H+ + VV PQ G R + CSG DLDGD Y V WD L+P + PPMD+TP + ++
Sbjct: 464 ALRHLRNVVVLPQTGERDLASMCSGGDLDGDDYMVLWDSHLLPKIINVPPMDFTPEKPIE 523
Query: 623 LDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFP 682
+ + ED+ ++F Y+ NDSLG IA+AH AD CL+LA+ S AVD+P
Sbjct: 524 TEKPITSEDISDFFVTYMKNDSLGQIAHAHLAQADISADGINDPVCLELAKLHSQAVDYP 583
Query: 683 KTGVPAEIPPHLYVKEYPDFMEK---PDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTK 739
K+G+PA + L K+YP FMEK P Y S+ ++G L+ V+ + F K
Sbjct: 584 KSGIPAMMDRELRPKKYPHFMEKKHLPSNKIYRSRKILGMLYDQVQLVDFQPQWENRFDK 643
Query: 740 EVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKS 799
V +YD D + + I K YD L LM +GI+TE E + ++ +
Sbjct: 644 RVL-EAYDLDGSLLQRAEGI------KVAYDEALRRLMAKHGIQTEFEAWSVFVLAHNHE 696
Query: 800 FTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKA---SAWYHVTYHP-DYWGC 855
+ AE G V AL+ + R + + S D +A Y VT + C
Sbjct: 697 SRDYKFAEEFGRTVSALKAQYREVCCQSADSSGVADWSHLGPFVAAMYTVTAKEMEAALC 756
Query: 856 YNQG-------------MNRDH--FLSFPWCVYDRLVEIKKDKTSIGNA 889
Q M+++H +SFPW L +I ++ N+
Sbjct: 757 ECQATKTVAGQQVSARTMDQEHMPLISFPWIFASELGKIATSVSAAHNS 805
>gi|156379597|ref|XP_001631543.1| predicted protein [Nematostella vectensis]
gi|156218585|gb|EDO39480.1| predicted protein [Nematostella vectensis]
Length = 523
Score = 384 bits (987), Expect = e-103, Method: Compositional matrix adjust.
Identities = 223/540 (41%), Positives = 306/540 (56%), Gaps = 30/540 (5%)
Query: 258 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGI 317
IR WMG+F IR V Y +R+GQ FS+S +T+ + +D IE + I+ + Y F+DGI
Sbjct: 1 IRRWMGDFSSIRCVGTYVSRMGQCFSTSLDTVGITVDGIECLEKDDIQTEEKSYTFTDGI 60
Query: 318 GKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESEL 376
G +S++ ARKV K G KD PSAFQIRY G KGV+A D + K+L R SMRK++S
Sbjct: 61 GGISSQLARKVTIKIG-KDFIPSAFQIRYAGCKGVLAVDKSLGEKQLFCRPSMRKFQSSH 119
Query: 377 TKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE 436
+L+VL S+ Q +LN Q+I LLS LGI D++F + + L L D A +
Sbjct: 120 RRLEVLQTSRPQAVYLNHQVIMLLSNLGISDDVFMSLLEKTLDNLGGTLLDERLAMR--Q 177
Query: 437 LMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP--NGRSMMG 494
L S + ++L G EPF + +L++L K R+ +P + R MMG
Sbjct: 178 LSSAVKRGISYRDLFDAGVHLTVEPFFRSLNAAVYRDRLMQLLMKARMQLPLESARLMMG 237
Query: 495 CLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDV 554
+DET L YGQVFVQ S A + S R +++G VVV +NPCLHPGDV
Sbjct: 238 VVDETGVLEYGQVFVQYSAASNDPRSDKEFELSDKR-----VLKGPVVVTRNPCLHPGDV 292
Query: 555 RVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP--- 611
R L A++ P L H+VDCVVFP+ G RPHP+E +G DLDGD+YFVCW LIP Q+
Sbjct: 293 RRLVAIDTPKLRHLVDCVVFPKTGQRPHPSEMAGGDLDGDLYFVCWYKPLIPSQEISLYD 352
Query: 612 PMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQL 671
PMDY + ++ D+ +Y +YI D LG+I N+H AD+ + +SE CL L
Sbjct: 353 PMDYKAPPKREDRTEITSADMTQYIVDYIRMDILGVIDNSHKALADKLKKGVQSEECLFL 412
Query: 672 AEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVK------ 725
AE S AVD PKTG ++ K YPDFM K DKPTY S+ ++GKL+R+ +
Sbjct: 413 AEAHSYAVDAPKTGQWPDLNGLKLPKSYPDFMMKTDKPTYRSKKLLGKLYRSCRSFKKLA 472
Query: 726 -DIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKT 784
D AP KE+ + DP++ V G+ +D+A Y +L ++M YGI T
Sbjct: 473 EDSAP---------KEITKPCLDPNLLVAGYRRFLDEAKNVYQEYCLRLDHIMGIYGINT 523
>gi|116193483|ref|XP_001222554.1| hypothetical protein CHGG_06459 [Chaetomium globosum CBS 148.51]
gi|88182372|gb|EAQ89840.1| hypothetical protein CHGG_06459 [Chaetomium globosum CBS 148.51]
Length = 1572
Score = 384 bits (987), Expect = e-103, Method: Compositional matrix adjust.
Identities = 261/799 (32%), Positives = 414/799 (51%), Gaps = 68/799 (8%)
Query: 50 IALPYEILFKINLLVQNGCVAGPLLDSNFY---------RLVDPYRAPVSISCIEHALDK 100
I+LPYE+ +++ + + G ++ + +F R + P RA + +E+A D+
Sbjct: 401 ISLPYEVRYQLEVCISRGILSEYNIRRDFLEKLFEMSKPRDLKPNRARL---VLEYAADE 457
Query: 101 LYHLKECCYEPSRWLTDQ--YRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGP 158
+ Y P D+ Y T+ + + D V +V VTP+R++F P
Sbjct: 458 ----GKPVYNPMELFEDRGAMAYYPTT--------LHIPDYCALVRKVTVTPTRIFFSTP 505
Query: 159 EINVSNRVLRHFRRDIDNFLRISFIDEDLD-KIHSTDLSPRGSSATDITRTRIYTRILST 217
+ +NRV+R ++ D+F+R+ F DE LD +I ++D+ +Y R+
Sbjct: 506 TVETTNRVVRRYKDVQDHFIRVQFTDELLDGRIRASDVD---------RDDELYARVCRV 556
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY--GLTAAEIREWMGNFREIRNVAKYA 275
+ GI +G ++FLAF +SQ+RE+ A+ F T IREWMGNF I +VAK A
Sbjct: 557 MTQGIRMGKWHWKFLAFGNSQIRENGAFFFCEPEDGTTTCHSIREWMGNFDHISSVAKLA 616
Query: 276 ARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK 335
ARLGQ FS+++ + I IPD++ G + F+DG+GK+S A V+ +
Sbjct: 617 ARLGQCFSTTRLLNCISAPRIVKIPDIESNDG---FCFTDGVGKISFPLASLVSEAWKI- 672
Query: 336 DNPPSAFQIRYGGYKGVVAADPTS-SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNR 394
D PSAFQ R GG KGV+ P + ++ +R S K+ +E L+++ S++ LNR
Sbjct: 673 DTRPSAFQFRMGGCKGVLVTWPDAKGTEVHVRPSQEKFSAEYNGLEIIRCSQFSCPTLNR 732
Query: 395 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL--- 451
Q I +LS LG+ D++F + D +T+ A+EL+S + N+ +
Sbjct: 733 QTILILSCLGVPDDVFIDMMAGQIASYDTAMTN---QDRAIELLSKYVDGNMTTTTIATM 789
Query: 452 -ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL-NYGQVFV 509
+ G+ EPF+ +LQ +R+ + L+ K R+ + G ++GC+DET TL + +
Sbjct: 790 ILNGFMHTREPFVRTLLQLWRSWSIKGLKEKARLVVDQGAFLLGCVDETGTLRGHSRATE 849
Query: 510 QISGAGYRQLHGESSLFSSSRSRQRF-IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 568
+G L + R + +V G+ +V +NP LHPGD+RV++AV+VP L H+
Sbjct: 850 GRNGITQNDLPQIFLQVPDRKDRGAYKVVTGICIVGRNPSLHPGDIRVVEAVDVPELRHL 909
Query: 569 VDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQ-QDPPMDYTPAQSMQLDHDV 627
D VVFP KG R P+ CSG DLDGD +FV WD +LIPP+ PPM+YT + + +
Sbjct: 910 RDVVVFPLKGDRDVPSMCSGGDLDGDDFFVIWDPKLIPPEWSHPPMNYTAPEPLNESQES 969
Query: 628 QIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVP 687
+ + +F ++ ND L +IA+AH AD E A+ CLQLA SIAVD+ KTG+P
Sbjct: 970 IVNSLAFFFVLFMKNDRLPLIAHAHLATADYEVTGAKHWKCLQLASLHSIAVDYVKTGIP 1029
Query: 688 AEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAV-KDIAPHTSCIRL-FTKEVARRS 745
A L ++YP FMEK +Y S +V+GKL+ + K++ + +L F + +R
Sbjct: 1030 ARWNKKLDPRKYPHFMEKAKAKSYRSTSVLGKLYDMIDKEVFDNRDNYKLPFDDRILKR- 1088
Query: 746 YDPDMEVDGFE-DH--IDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTK 802
FE H + +A K YD + +M I+TE EI +M + T
Sbjct: 1089 ---------FELGHPLLKEARKIKTQYDISMRRIMGQLEIRTEFEIWAAFVMSKPRVGTD 1139
Query: 803 RRDAEAIGMAVRALRKEAR 821
+ E +G L+K+ R
Sbjct: 1140 YKVQEKVGRESAGLKKQFR 1158
>gi|330935167|ref|XP_003304850.1| hypothetical protein PTT_17559 [Pyrenophora teres f. teres 0-1]
gi|311318353|gb|EFQ87064.1| hypothetical protein PTT_17559 [Pyrenophora teres f. teres 0-1]
Length = 1458
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 235/700 (33%), Positives = 379/700 (54%), Gaps = 38/700 (5%)
Query: 146 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD-KIHSTDLSPRGSSATD 204
V +TP+ ++ P + SNR++R + D D F+R+ F DE + ++ S P G S
Sbjct: 575 VVITPTMMHVASPVMETSNRIIRKYAADSDRFIRVKFSDEKTEGQLRSM---PNGKSEA- 630
Query: 205 ITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGN 264
++ R+ +R+GI++ R +EFLAF +SQ RE A+ +A +A +IR +G+
Sbjct: 631 -----VFDRVRRAMRHGIVVAGRYYEFLAFGNSQFREHGAYFYAPTSSKSADDIRLSLGD 685
Query: 265 FREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEF 324
F +I+ VAK+ ARLGQ FS+++ ++++I P IE + + F+DG+GK+S
Sbjct: 686 FTQIKTVAKFGARLGQCFSTTR----AMREKVKITPIPDIE--RNGHTFTDGVGKLSPFV 739
Query: 325 ARKVASKCGLK---DNPPSAFQIRYGGYKGVVAAD-PTSSKKLSLRDSMRKYESELTKLD 380
A+ A + GL D+PPS FQ R GG KGV+A D + ++ +R S +K+ ++ L+
Sbjct: 740 AKMAAKELGLSNAFDDPPSLFQFRLGGCKGVLALDLNITGTEVHIRPSQQKFHAKFMGLE 799
Query: 381 VLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD-PLKAQEALELMS 439
++ S F NRQ+I +LS LG+ D + KKQ+E V + +TD + Q+ + +
Sbjct: 800 IIRSSALATPFFNRQIIVVLSHLGVPDHVIIKKQQEMVNDYETAMTDESIALQKLRKHID 859
Query: 440 PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET 499
++T + +++ G+ +PF+ +L+ +RA + L+ K RI I +G ++GC+DET
Sbjct: 860 MNQSTLTMAAMVLDGFMKIQDPFMMSLLKLWRACTIKNLKEKARIAIEDGAFVLGCVDET 919
Query: 500 RTL--NYGQVFVQISGAGYRQLHGESSLF----SSSRSRQRFIVQGLVVVAKNPCLHPGD 553
L + ++ +L +F + + I++G+ ++A+NP LHPGD
Sbjct: 920 AKLKGHMNDPQSRLDATRDEKLATLPEIFLQVDDTDKKGHYKIIEGVCILARNPSLHPGD 979
Query: 554 VRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD-PP 612
+RV++AVN+P L H+ + VV PQ G R N CSG DLDGD Y V WD LIP + PP
Sbjct: 980 LRVVRAVNIPELRHLKNVVVLPQTGDRDLANMCSGGDLDGDDYMVLWDAALIPKTINVPP 1039
Query: 613 MDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLA 672
MD+TP + ++D + D+ E+F Y+ ND+LG IA+AH AD E CL LA
Sbjct: 1040 MDFTPEKPEEIDGPISAADIGEFFVTYMKNDTLGQIAHAHLAQADFRADGVNDETCLALA 1099
Query: 673 EKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYE---SQNVIGKLFRAVKDIAP 729
E S AVDFPK+G+PAE+ L +++P FMEK Y+ S ++G L+ V+ +
Sbjct: 1100 ELHSKAVDFPKSGLPAEMDRELRPRKWPHFMEKKHISQYKIYRSTKILGMLYDQVQLVDF 1159
Query: 730 HTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEIL 789
F K V ++D D + I K +YD L LM +GI+TE E
Sbjct: 1160 KPQWENPFDKRVL-DAFDLDATMKAKAAEI------KSSYDDSLRRLMAKHGIRTEFEAW 1212
Query: 790 TGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSG 829
+ ++ + + +E G V L+ R + +G
Sbjct: 1213 SVFVLAHNHESRDYKFSEEFGRTVGILKAHYRGECRIAAG 1252
>gi|358384867|gb|EHK22464.1| hypothetical protein TRIVIDRAFT_28428 [Trichoderma virens Gv29-8]
Length = 1158
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 246/732 (33%), Positives = 386/732 (52%), Gaps = 63/732 (8%)
Query: 141 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 200
V + +TP+ + P + SNRVLR+F D FLR+ F++E +
Sbjct: 330 VLARKAAITPTSILLSSPIVETSNRVLRYFNHIQDRFLRVQFVEE---------MESGRI 380
Query: 201 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIRE 260
+ T + ++ +IL TL GI IGDR++EFLAF SSQLR+ A+ F ++ +IR
Sbjct: 381 AMTSRNKEDVWKKILRTLYEGIQIGDRRYEFLAFGSSQLRQCGAYFFCPTDHISCDDIRR 440
Query: 261 WMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKV 320
WMG IR VAK+AARLGQ FS+++E + + ++ IPD++ + Y F+DG+G +
Sbjct: 441 WMGEVGHIRIVAKHAARLGQCFSTTREMRGLPVPDVRRIPDIE----RNGYCFTDGVGMI 496
Query: 321 SAEFARKVASKCGLKD-NPPSAFQIRYGGYKGVVAADPTSSK-KLSLRDSMRKYESELTK 378
S AR + + L P+AFQ R GG KGV+ P + K ++ +R+S K+++++
Sbjct: 497 SEFMARMIIEEMTLDVYTEPTAFQFRMGGCKGVLVVWPQAKKGEVYIRESQEKFKADVKG 556
Query: 379 LDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-EL 437
L+++ +KY LNRQ I++L LG+ F + + + + + A L +
Sbjct: 557 LEIIKCAKYSSATLNRQTITILECLGVSTPAFLAILEKQISLYEEAMKNNNVAVNILTKC 616
Query: 438 MSPGENTNILKELLICGYKPDA--EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGC 495
+ ++T IL ELL G+K D EPF++ +L +R+ L LR K RI I ++GC
Sbjct: 617 VDENQSTLILAELLQSGFKTDTVQEPFVTNLLALWRSWSLKLLRDKARIPIEKSAFVLGC 676
Query: 496 LDETRTL----------------NYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 539
+DET L Q+F+Q+S +S ++ + + ++G
Sbjct: 677 VDETGILRGHSNATEGTVDKDINKLPQIFLQVS---------DSKVYDQANA-----IEG 722
Query: 540 LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVC 599
+ +V +NP LHPGD+RV++AV++P LHH+ D VVFP G RP PN SG DLDGD +F+
Sbjct: 723 VCIVGRNPSLHPGDIRVVEAVDIPELHHLKDVVVFPSTGDRPVPNMLSGGDLDGDDFFII 782
Query: 600 WDDELIPPQQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADR 658
W+ LIP + + P M+Y+ LD DV D+ ++F Y+ ND L +IA AH AD
Sbjct: 783 WEPTLIPTEWNHPAMNYSSPSPATLDRDVNANDLRDFFVRYMQNDVLPLIATAHLGLADS 842
Query: 659 EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLY-VKEYPDFMEKPDKPTYESQNVI 717
+ K S+ CL+LAE S AVD+PKTG PAE P L+ KE+P FM+K K Y+S+ +
Sbjct: 843 DGPK--SDICLRLAELHSQAVDYPKTGEPAEWNPGLHNPKEWPHFMDK--KVCYKSKKAL 898
Query: 718 GKLFRAV--KDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGN 775
G ++ V + I F + + +R ++D + DA K YD +
Sbjct: 899 GAIYNRVIKQSIQFRPDWENAFDQRILKR-----FQLDN--AMLKDARIIKSQYDIAVRR 951
Query: 776 LMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDD 835
++ + ++TE E+ T M + + E +G A+++ R E +G E
Sbjct: 952 ILLQHKLETEFELYTSWAMSKPSVGSDYKRQEELGKEFDAVKQRFREACFEAAGGYDEAK 1011
Query: 836 AYAKASAWYHVT 847
+A Y VT
Sbjct: 1012 IDKFVAAMYKVT 1023
>gi|342879234|gb|EGU80489.1| hypothetical protein FOXB_08949 [Fusarium oxysporum Fo5176]
Length = 1391
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 261/836 (31%), Positives = 423/836 (50%), Gaps = 97/836 (11%)
Query: 47 PDGIA-LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLK 105
PD I LP+EI +++ + + G + ++ F + + + C+E D
Sbjct: 390 PDSIVHLPFEIRYQLEVCLSRGYLNEHMIGREFLERLANMKPAKARLCLESVADN----A 445
Query: 106 ECCYEPSRWLTD-QYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSN 164
+ +P L + Q + PS + + + +TP+ + + P + +SN
Sbjct: 446 QVVIDPMAILEESQIDGSIIMSRIPSHCCL--------IRKAVITPTTIRYTTPTVEMSN 497
Query: 165 RVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRT-RIYTRILSTLRNGIL 223
RV+R ++ D FL+I F +E +G A + + IY R+L ++ G+
Sbjct: 498 RVMRRYKHYEDRFLKIQFTEE----------MEKGRIAVNKDQNDEIYKRVLRSMYKGVR 547
Query: 224 IGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFS 283
IGDR +EFLAF +SQLR + A+ F L+ +IR WMG F I+ VAKYAARLGQ FS
Sbjct: 548 IGDRFYEFLAFGNSQLRVNGAYFFCPTEHLSCDDIRRWMGQFSHIKVVAKYAARLGQCFS 607
Query: 284 SSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNP-PSAF 342
+++E ++ + IPD++ + Y F+DGIGK+S+ A+ ++ L PSAF
Sbjct: 608 TTRELHAISAPATQQIPDIE----RNGYCFTDGIGKISSFLAQLISEDMILDVVARPSAF 663
Query: 343 QIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLL 400
Q R GG KGV+A P +K ++ +R+S +K+ES+ L+++ + LNRQ I++L
Sbjct: 664 QFRMGGCKGVLAIWPNDTKVMEVHIRESQKKFESDSKGLEIIRSAAMATATLNRQTITIL 723
Query: 401 STLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPD-- 458
LG+ F +R + + D A+++++ + N + +LL G+K D
Sbjct: 724 ECLGVPIASFTNLLDHQLRSYELAMED---NDVAIDMLTKFVDENNISDLLRAGFKTDDL 780
Query: 459 AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN--------------- 503
EPF+ +L+ +R+ L L+ K RI + ++GC+DET TL
Sbjct: 781 QEPFVVNVLKLWRSWSLKLLKEKARIQVQKSAFVLGCVDETGTLRGHSSETEGSEDKATD 840
Query: 504 -YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNV 562
Q+F+Q+S A + ++ ++ ++ G+ ++ +NP LHPGD+RV++AV+
Sbjct: 841 RLPQIFIQLSDATH---------YNKTQ-----VISGVCIIGRNPSLHPGDIRVVEAVDC 886
Query: 563 PALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD-PPMDYTPAQSM 621
PALHH+ D VVFP G +P PN SG DLDGD +FV W+ LIP + + PPM+Y + +
Sbjct: 887 PALHHLRDVVVFPSTGDQPVPNMLSGGDLDGDDFFVIWEPTLIPRRWNYPPMNYLAPKPI 946
Query: 622 QLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDF 681
+LD DV ++D+ +F Y+ ND L +IA +H F+D S CL+LAE S AVD+
Sbjct: 947 ELDRDVTVDDLRNFFVKYLKNDKLPLIATSHLAFSDD--LGPMSPKCLELAELHSKAVDY 1004
Query: 682 PKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEV 741
PKTG PA + +++P FMEK K +Y S+ +G +F VK K+V
Sbjct: 1005 PKTGDPAVLRRDQQPRKWPHFMEK--KNSYTSRKALGVIFDKVKG------------KQV 1050
Query: 742 ARRSYDPDME-------VDGFE---DHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTG 791
+DP + + FE D + A K YD + L+ + +KTE E+ TG
Sbjct: 1051 ---KFDPIWDSPFDQRIIKKFELNRDTLKSARKIKTQYDTSVRRLLSQHALKTEFELWTG 1107
Query: 792 SIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVT 847
M + + E + L+ R + +GS + +A Y VT
Sbjct: 1108 FAMSKPAVGSDYKVQEELRREYNNLKAAFRQLCIDTAGSKNAEKLEPFVAAMYKVT 1163
>gi|156361828|ref|XP_001625486.1| predicted protein [Nematostella vectensis]
gi|156212322|gb|EDO33386.1| predicted protein [Nematostella vectensis]
Length = 531
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 229/555 (41%), Positives = 324/555 (58%), Gaps = 53/555 (9%)
Query: 258 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDE---IEIIPDVKIE--------I 306
IR +G+ EIR VA + +R+GQ FSS+K+++ V +D IE IPDV+ E
Sbjct: 1 IRSKLGDLEEIRCVAVFVSRMGQCFSSTKKSVEVSLDNGVRIEKIPDVEKEYNNVLFPCC 60
Query: 307 GKTK---YVFSDGIGKVSAEFARKVASKCGLK--DNPPSAFQIRYGGYKGVVAADPT-SS 360
G + Y+FSDGIGK+S + A KVA GL+ + PSA+QIRY G KG++A DP+
Sbjct: 61 GNVRSGVYIFSDGIGKISKDLANKVAKSLGLEAVEMFPSAYQIRYAGCKGMLAVDPSLRG 120
Query: 361 KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQ 420
+ L RDSM+K++S L++ S+ + NRQ I+LLS LG+ D+ F + Q + +
Sbjct: 121 EVLQYRDSMKKFQSSHKALEICEPSRPSELYFNRQCITLLSGLGVPDDEFIRLQDKMLMD 180
Query: 421 LDAILTDPLKAQEALELMSPGENTNILKELLI--CGYKPDAEPFLSMMLQTFRASKLLEL 478
L ++L A E+L +S LK LI G EPF ML S+L +L
Sbjct: 181 LASMLLYETSALESLGRISIAGG---LKVSLIRHSGIVVTCEPFFRSMLLAIYRSRLGDL 237
Query: 479 RTKTRIFIP--NGRSMMGCLDETRTLNYGQVFVQIS------GAGYRQLHGESSLFSSSR 530
+ RI IP +GR +MG LDET +L+YG+VF++ + G GY L G+
Sbjct: 238 LRRARIAIPESHGRLLMGVLDETGSLDYGEVFIRYTTELGNPGQGYTILTGD-------- 289
Query: 531 SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSD 590
VVV+KNPC HPGD+R AV++PAL+H+VDC+VFP KG RPH +E SGSD
Sbjct: 290 ----------VVVSKNPCFHPGDMRKFNAVDIPALYHLVDCIVFPAKGPRPHTDEMSGSD 339
Query: 591 LDGDIYFVCWDDELIPPQ-QDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIA 649
LDGD YF W +IP + +PPMD+ P + L+ +++ D+ ++ +YI ND LG+IA
Sbjct: 340 LDGDKYFATWLRGIIPDRDNEPPMDFYPPKKKMLNRPIEVSDMIQFVADYIKNDQLGVIA 399
Query: 650 NAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKP 709
NAH V AD E S+ C++LA S AVDFPKTG E+ L ++YPDFM KPDKP
Sbjct: 400 NAHLVHADSEQDGIFSDKCIKLAHMHSDAVDFPKTGECPELTKELRPEQYPDFMMKPDKP 459
Query: 710 TYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARR-SYDPDMEVDGFEDHIDDAIYHKGN 768
Y S NV+GKLF+ + R T + + + D DM ++G + +++DAI +
Sbjct: 460 RYVSHNVLGKLFQKCNSL---ERARRFMTGDSTKDITVDQDMILEGHQSYLEDAIEQRDR 516
Query: 769 YDYKLGNLMDYYGIK 783
Y+ KL LM YG++
Sbjct: 517 YNAKLEALMARYGLE 531
>gi|320586448|gb|EFW99118.1| RNA-directed RNA polymerase [Grosmannia clavigera kw1407]
Length = 2177
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 262/819 (31%), Positives = 417/819 (50%), Gaps = 66/819 (8%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 111
L +E+ +++ + + G + LD F + + +E+ ++ + Y+P
Sbjct: 1016 LSFEVSYQLEVCISRGILQEHSLDVVFLESLAALSPDRACRVLEYVAER----DKRIYQP 1071
Query: 112 SRWLTDQYRKYMTSRSKPSSPAISLD-DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF 170
D S + + P +LD D VY+ + VTP+ + F P + NRVLRH+
Sbjct: 1072 HNIFRD---PKAASYWRKTPPEATLDKDRAVYIRKAIVTPTTIVFSTPALEAGNRVLRHY 1128
Query: 171 RRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRT-RIYTRILSTLRNGILIGDRKF 229
R D FLR+ F DE +H LS D TRT +TR L+NGI +G R F
Sbjct: 1129 REHHDRFLRVQFTDE----LHIGRLS----GGPDTTRTDECFTRAFRALKNGIRVGGRHF 1180
Query: 230 EFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 289
+FLAF +SQLRE+ A+ FA +T ++R+WMG+F I+ VAKYAARLGQ S+++
Sbjct: 1181 KFLAFGNSQLRENGAYFFAPTELVTCQDVRDWMGDFSNIKTVAKYAARLGQCLSTTRPVP 1240
Query: 290 SVHM-DEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGG 348
+ + ++ IPDV+ + F+DG+GK+S +AR +AS + + PSAFQ R GG
Sbjct: 1241 TFGVPTTVQHIPDVE----GGGFCFTDGVGKISKWWARVIASHLRVSEV-PSAFQFRMGG 1295
Query: 349 YKG--VVAADPTSSKKLSLRDSMRKYES--ELTKLDVLAWSKYQPCFLNRQLISLLSTLG 404
KG VV D S + + +R S K+ + + L+++ S+ LN+Q I LL+ LG
Sbjct: 1296 CKGVLVVWPDVPSGQVVQVRPSQEKFPTSDKANVLEIVRCSETATATLNQQTILLLTCLG 1355
Query: 405 IWDEIFEKKQREAVRQLDAILTDPLKAQEALEL-MSPGENTNILKELLICGYKPDAEPFL 463
I +F + E + +DA++ D KA + L + + T+ L +++ G+ EPF+
Sbjct: 1356 IPTSVFLELLNEELTGIDAVMKDARKAVDQLMVRVDQNHTTHALADMVKAGFMDSDEPFV 1415
Query: 464 SMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL--------------------- 502
+LQ +R+ L L+ K RI + ++GC+DET TL
Sbjct: 1416 WALLQLWRSWTLKALKEKARITVERSAFVLGCVDETDTLRGHTNEPERPTNEDTRDKIDD 1475
Query: 503 ------NYGQVFVQISGA-GYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR 555
Q+F+Q+ SS+ + + ++ GL +V +NP LHPGD+R
Sbjct: 1476 KENKIARLPQIFLQVPDLDAVTAGQVRSSIDQDAGHGKYKVIVGLCLVGRNPSLHPGDLR 1535
Query: 556 VLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD---PP 612
V++AV+VPALHH+ D VVFP+ G R P CSG DLDGD YFV WD L+PP +
Sbjct: 1536 VVEAVDVPALHHLRDVVVFPRVGDRDIPGMCSGGDLDGDDYFVFWDKRLLPPHRVWNYEA 1595
Query: 613 MDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLA 672
M+Y ++ +D V + + +F ++ +D+L IA +H FAD+ A CL+LA
Sbjct: 1596 MNYEASREPDVDR-VTLRHLISFFVQHMKHDTLPRIALSHRGFADQLDGGAMHPRCLELA 1654
Query: 673 EKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTS 732
+ S AVD+ KTG+PA +P L K++P +M + K TY S +GK++ VK + +
Sbjct: 1655 QLHSQAVDYAKTGIPALLPHRLNPKQWPHWMNRIQKHTYRSPTALGKIYDRVKVDSFEPA 1714
Query: 733 CIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGS 792
+ F + + PD+++ D + A K YD L M I +E E+ TG
Sbjct: 1715 YDKPFDVRILH--HYPDLDI----DLLRRARRIKTQYDLALRRAMAQKEIGSEFEMWTGF 1768
Query: 793 IMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSD 831
+ + + + +E IG + + R ++G +
Sbjct: 1769 SIHRPRVGSDYKASEDIGRIFKVIMSRFRRLCVREAGDE 1807
>gi|425780985|gb|EKV18967.1| RNA-directed RNA polymerase (Sad-1), putative [Penicillium digitatum
PHI26]
Length = 1533
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 236/636 (37%), Positives = 355/636 (55%), Gaps = 27/636 (4%)
Query: 210 IYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIR 269
IYTR+ TL NGI IGDR +EFLAF +SQ RE A+ FA G++AA IR WMG F IR
Sbjct: 708 IYTRVKRTLANGISIGDRHYEFLAFGNSQFREHGAYFFAPDAGVSAATIRAWMGQFNHIR 767
Query: 270 NVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVA 329
NVAKYAARLGQ FS+++ + ++ DV + + FSDG+GKVS A+ V
Sbjct: 768 NVAKYAARLGQCFSTTRAFTGSSV-QVATCNDVV----RNGFTFSDGVGKVSKFLAQMVT 822
Query: 330 SKCGLK---DNPPSAFQIRYGGYKG--VVAADPTSSKKLSLRDSMRKYESELTKLDVLAW 384
S+ +K PSAFQ R GG KG VV+ DP +++ +R S +K+E+ L+++ W
Sbjct: 823 SQHNIKTLTGESPSAFQFRLGGAKGMLVVSPDPM-PQEVHIRPSQQKFETTQAGLEIIRW 881
Query: 385 SKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGEN 443
S+Y LNRQLI +LS LGI D++F K + ++ + KA L+ + P +
Sbjct: 882 SQYSLATLNRQLILVLSALGIPDKVFHSKLNSMLGSFHRVMCNDSKAINLLQKYIDPNQT 941
Query: 444 TNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL- 502
T IL +++ G++ + EPF + ML+ +++ L L+ K +I I G +++G +DET L
Sbjct: 942 TLILAQMVSDGFRQNEEPFANTMLELWKSWHLKHLKEKAKIAIDQGANLLGVMDETGVLK 1001
Query: 503 NYGQVFVQISGAGYRQ-LHGESSLFSS----SRSRQRFIVQGLVVVAKNPCLHPGDVRVL 557
Y + + GA Y Q L +F + + +++GL ++A+NP LHPGD+RV+
Sbjct: 1002 GYFKNTLPRRGASYAQKLAALPEIFVQICRLEGNGEYEVIEGLCILARNPSLHPGDIRVV 1061
Query: 558 KAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ-DPPMDYT 616
+AVN P L + D VV PQ G + + CSG DLDGD Y + WD +LIP + MDY
Sbjct: 1062 RAVNRPELKGLRDVVVLPQTGDQDIASMCSGGDLDGDDYLIIWDPDLIPTRWFVECMDYK 1121
Query: 617 PAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFS 676
+++ LDHDV ++++ +F Y+ ND L IA+AH +ADR PR E C++LA+ S
Sbjct: 1122 GSKAPDLDHDVTVDEITSFFVTYMKNDCLPRIAHAHLAWADRLPRGVWEEKCIRLAQLHS 1181
Query: 677 IAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDK---PTYESQNVIGKLFRAVKDIAPHTSC 733
AVD+ K+G A + L K +P FMEK K Y+S ++G+L+ AV + P+
Sbjct: 1182 DAVDYNKSGAHARMARSLDPKFWPHFMEKRFKRPSSIYKSTKILGQLYDAV--VTPN--F 1237
Query: 734 IRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSI 793
+ K R + + E +I+ A K +D + +M Y I TE E+ + +
Sbjct: 1238 VPKLGKPFDSRILESPL-ASASETYIEYARELKAEFDMNMRQIMAQYEINTEFEVWSTFV 1296
Query: 794 MKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSG 829
++ + E +G V LR+ R +K G
Sbjct: 1297 LRHGFVIRDYKMQEDLGRIVGTLRRGFRHQCYDKVG 1332
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 84/183 (45%), Gaps = 22/183 (12%)
Query: 12 FKENFAYYKESEDR------FVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQ 65
F + +++ E DR ++ + S +++ L+ +G + I LP+++ +++ + +
Sbjct: 336 FIRDGSHFVEKTDRPVPVWHWIDFSESKSNKASALLQDLGDQNYIHLPFKVRYQLEVCLS 395
Query: 66 NGCVAGPLLDSNFYRLVDPYRAPVSISCIEH-ALDKLYHLKECCYEPSRWLTDQYRKYMT 124
G ++ + F V + +E A +K +L +P ++ K +T
Sbjct: 396 QGYLSEFSMSREFVEKVKDLGDDQATRLLEFVATEKKQYL-----DPMEIFDLKFFKRVT 450
Query: 125 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF--RRDIDNFLRISF 182
PS ++H +VTP+ +Y+ P +++SNRV+R + + FLR+ F
Sbjct: 451 DSKIPSY--------CCFMHTARVTPTTIYYNTPTVDISNRVVREWSTKSAPGRFLRVRF 502
Query: 183 IDE 185
DE
Sbjct: 503 TDE 505
>gi|302918417|ref|XP_003052653.1| hypothetical protein NECHADRAFT_91974 [Nectria haematococca mpVI
77-13-4]
gi|256733593|gb|EEU46940.1| hypothetical protein NECHADRAFT_91974 [Nectria haematococca mpVI
77-13-4]
Length = 1250
Score = 377 bits (968), Expect = e-101, Method: Compositional matrix adjust.
Identities = 255/743 (34%), Positives = 378/743 (50%), Gaps = 64/743 (8%)
Query: 131 SPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKI 190
SP + V +V VTP+ + F P + +SNRV+R ++ D FLRI F++E +
Sbjct: 408 SPIARIPQYCALVRKVVVTPTTIRFNSPAVEMSNRVMRQYKHIQDRFLRIQFVEE----L 463
Query: 191 HSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASR 250
+T ++ +I Y R+L T+ GI IGDR +EFLAF SSQLR + A+ F
Sbjct: 464 ENTRIAINKDQNDEI-----YKRVLRTMYQGIRIGDRVYEFLAFGSSQLRVNGAYFFCPT 518
Query: 251 YGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK 310
+ +IR+WMG F I+ VAKYAARLGQ FS+++E + I IPD++ +
Sbjct: 519 EHTSCDDIRKWMGQFSHIKVVAKYAARLGQCFSTTREVRGISSPAIREIPDIE----RNG 574
Query: 311 YVFSDGIGKVSAEFARKVASKCGLKD-NPPSAFQIRYGGYKGVVAADPTS-SKKLSLRDS 368
+ FSDG+GK+S A+ V L + PSAFQ R GG KGV+ P + ++ +R+S
Sbjct: 575 HCFSDGVGKISPFVAQLVNEDMALDIFDKPSAFQFRMGGCKGVLTVWPDAKGMEVHVRES 634
Query: 369 MRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 428
+K+E++ L+++ + + LNRQ I +L +LG+ + F + + + + D
Sbjct: 635 QKKFEADSKGLEIIRCAGFATATLNRQTIIILESLGVPIKAFTDLLDQQLGSYEQAMQDN 694
Query: 429 LKAQEALELMSPGENTN-ILKELLICGYKPDA--EPFLSMMLQTFRASKLLELRTKTRIF 485
A E L TN ++ ELL +K D EPF+ +L +RA L L+ K RI
Sbjct: 695 GVAIEMLAKFVDEHQTNLVIAELLKAEFKTDELREPFVINVLSLWRAWSLKILKEKARIQ 754
Query: 486 IPNGRSMMGCLDETRTLN----------------YGQVFVQISGA-GYRQLHGESSLFSS 528
+ ++GC+DET TL Q+F+QI+ + Y + H
Sbjct: 755 VEKSAFVLGCVDETETLRGHSKDSEGSKPKDVNMLPQIFLQITDSRNYNKTH-------- 806
Query: 529 SRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSG 588
I+QG+ +V +NP LHPGD+RV++AV+ L H+ D VVFP G RP PN SG
Sbjct: 807 -------IIQGVCIVGRNPSLHPGDIRVVEAVDCSKLRHIKDVVVFPATGDRPVPNMLSG 859
Query: 589 SDLDGDIYFVCWDDELIPPQQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGI 647
DLDGD +FV W+ LIP + PMDY + +LD DV ++D+ +F Y+ ND L +
Sbjct: 860 GDLDGDDFFVIWEPSLIPKTWNYSPMDYAAPKPKELDRDVNVDDLRNFFVKYLKNDKLPL 919
Query: 648 IANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPD 707
IA +H FAD+ S CL+LAE S AVD+PKTG PA + +++P FMEK
Sbjct: 920 IATSHLGFADQ--LGPMSPKCLELAELHSKAVDYPKTGEPATLRRDQQPRKWPHFMEK-- 975
Query: 708 KPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARR---SYDPDMEVDGFEDHIDDAIY 764
K Y S +G ++ V + A ++ R Y D E+ + A
Sbjct: 976 KQFYHSDKALGVIYDKVVNKAKVIQFNPIWDSPFDDRITKKYKLDNEL------LKAARK 1029
Query: 765 HKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWF 824
K YD + L+ + +KTE E+ TG M T + E++ AL+ R
Sbjct: 1030 VKSQYDTAVRRLLSQHDLKTEFELWTGFAMSKPAVGTDYKLQESLSHEYDALKYRFRDIC 1089
Query: 825 KEKSGSDTEDDAYAKASAWYHVT 847
E +G D +A Y VT
Sbjct: 1090 YEAAGGKLTDQVDRFVAAMYTVT 1112
>gi|171685025|ref|XP_001907454.1| hypothetical protein [Podospora anserina S mat+]
gi|170942473|emb|CAP68125.1| unnamed protein product [Podospora anserina S mat+]
Length = 1493
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 254/737 (34%), Positives = 379/737 (51%), Gaps = 78/737 (10%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
V +V VTP+++ F P + +NRV+RH+ + F+RI F DE L+ RGS A
Sbjct: 529 VRKVMVTPTKIIFSTPTVETTNRVIRHYWTFQNYFMRIQFTDEQLEG------RVRGSDA 582
Query: 203 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF------ASRYGLTAA 256
+YTR+ L GI +G ++FLAF +SQ+RE+ A+MF A +
Sbjct: 583 D--RDDDLYTRVYRVLFWGIRMGKWHWKFLAFGNSQVRENGAFMFCQPDSHAGDMVPSCD 640
Query: 257 EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDG 316
+IR WMGNF I+ VAKYAARLGQ FS+++ I I D+ GK + F+DG
Sbjct: 641 DIRRWMGNFEHIKVVAKYAARLGQCFSTTRVLRGGTFPPIVEIEDINTADGK--HCFTDG 698
Query: 317 IGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV-VAADPTSSKKLSLRDSMRKYESE 375
+G++S +R VA + PPSA+Q R GG KGV V ++ +R S K+ +
Sbjct: 699 VGRISPLLSRLVAEDWQVYP-PPSAYQFRMGGCKGVLVGWKHAKGTEVHIRPSQEKFSAA 757
Query: 376 LTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL 435
L+V+ S + LNRQ I++LS+LG+ D +F RE + + D +TD A + L
Sbjct: 758 YNGLEVVRCSSFSCATLNRQTITILSSLGVPDHVFVDLMREQLSRFDRAMTDGKSAVDML 817
Query: 436 -ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMG 494
+ T + ++ G+ EPF+ +LQ +RA L L+ K R+ + G ++G
Sbjct: 818 TSFVDENMTTVSIARMIKSGFMDSNEPFVKTVLQLWRAWSLKTLKEKARLAVEKGAFVLG 877
Query: 495 CLDETRTL----------------NYGQVFVQISG----AGYRQLHGESSLFSSSRSRQR 534
C+DET TL Q+F+QI +GY+
Sbjct: 878 CVDETGTLRGHSKATEGRQRIRRDQLPQIFLQIPDRDDPSGYKA---------------- 921
Query: 535 FIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGD 594
+ GL ++ +NP LHPGD+RV++AV+VPAL H+ D VVFP +G R P+ CSG DLDGD
Sbjct: 922 --IAGLCIIGRNPSLHPGDIRVVEAVDVPALRHLRDVVVFPLEGDRDVPSMCSGGDLDGD 979
Query: 595 IYFVCWDDELIPPQ-QDPPMDYTPAQSMQLDHDVQI-EDVEEYFTNYIVNDSLGIIANAH 652
+FV WD++L+P + PPMD+TP + D I E + +F ++ ND L IA+AH
Sbjct: 980 DFFVIWDEKLLPTEWSHPPMDHTPQPPVTSDSKKSIMESLASFFVLFMKNDRLPFIAHAH 1039
Query: 653 TVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYE 712
AD EP+ A+SE CL+LAE TGVPAE L + +P FME+ K +Y
Sbjct: 1040 LATADAEPQGAKSEKCLKLAE---------MTGVPAEWSKKLNPRSWPHFMER-QKGSYH 1089
Query: 713 SQNVIGKLFRAV--KDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYD 770
S+ +G+L+ V +D + F + + R Y D EV + A K YD
Sbjct: 1090 SKTALGQLYDMVHTQDFDSTKNYQSPFDRRILSR-YMLDQEV------LKTARKIKTQYD 1142
Query: 771 YKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGS 830
+ ++ I+TE E+ TG +M + + + E +G ALR++ RA + +G
Sbjct: 1143 IAMRRILGMLEIRTEFEVWTGFVMFKPRVGSDYKVQEKVGREAAALREQFRAECIKAAGD 1202
Query: 831 DTEDDAYAKASAWYHVT 847
+ +A Y VT
Sbjct: 1203 RHFEKLGPFVAAMYQVT 1219
>gi|34447177|dbj|BAC84970.1| RNA-directed RNA Polymerase [Vigna unguiculata]
Length = 257
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/252 (73%), Positives = 207/252 (82%), Gaps = 5/252 (1%)
Query: 632 VEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIP 691
VEEYFTNYIVNDSLGIIANAHTVFAD +PRKA SE CL+LA+ FS AVDFPKTGVPA IP
Sbjct: 1 VEEYFTNYIVNDSLGIIANAHTVFADNQPRKAMSEECLKLAKLFSTAVDFPKTGVPAVIP 60
Query: 692 PHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDI--APHTSCIRLFTKEVARRSYDPD 749
LYVKEYPDFMEK DK TY S NVIGKL+R V + + I FT+EVAR SYD D
Sbjct: 61 RVLYVKEYPDFMEKSDKETYISPNVIGKLYREVIEAISSSDGGSISSFTREVARTSYDFD 120
Query: 750 MEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAI 809
MEVDGF D++DDA YHK NYDYKLGNLMDYYGIKTEAEIL+G+I+K+SK F KRRDAEAI
Sbjct: 121 MEVDGFLDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILSGNIIKLSKCFNKRRDAEAI 180
Query: 810 GMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFP 869
AV +LRK+AR+WF E + DD YAKASAWYHVTYHP YWGCYNQGM RDH+LSFP
Sbjct: 181 NKAVTSLRKDARSWFNEGNNG---DDEYAKASAWYHVTYHPSYWGCYNQGMGRDHYLSFP 237
Query: 870 WCVYDRLVEIKK 881
WCV+ +L++IKK
Sbjct: 238 WCVFPQLLQIKK 249
>gi|15422180|gb|AAK95829.1| putative RNA-dependent RNA polymerase [Diaporthe ambigua]
Length = 1483
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 266/894 (29%), Positives = 438/894 (48%), Gaps = 91/894 (10%)
Query: 37 SLDL-VPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFY-RLV--DPYRAPVSIS 92
S DL + ++G D L + + +++ + + +G + + + F RL+ D RA + +
Sbjct: 457 STDLTLELLGSTDAYHLDFPVRYQLEVCISHGLLDEYSIGAQFLGRLISFDTDRARMLLE 516
Query: 93 CIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSR 152
+ A + + E +P + +R+ P + V R +TP+
Sbjct: 517 GVAEANRQFFEPMEIFDDPK-----ILHYWPNARTPPYA---------TLVRRAVITPTA 562
Query: 153 VYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYT 212
+YF P + ++NR+LR + D FLR+ F DE I S + S D ++T
Sbjct: 563 IYFKSPCVELTNRILRKYSDLNDRFLRVQFTDE----ITSGKIFSSQDSTKD---DNLFT 615
Query: 213 RILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVA 272
R+ +RNGI+IGDR + FLAFS+SQ RE+ A+ F + +T IREWMG+FR IR+V
Sbjct: 616 RVHRVMRNGIVIGDRHYRFLAFSNSQFRENGAFFFCNTDHVTCESIREWMGDFRHIRSVG 675
Query: 273 KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC 332
K+AAR+GQ F+++++ + + +I I D++ + G + F+DG+GK+S A +A++
Sbjct: 676 KFAARMGQCFTTTRQVNGISIPKIRQIGDIQQQTGDHIWNFTDGVGKISPFLATLIANER 735
Query: 333 GLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCF 391
L + PS FQIR GG KGVV P ++ +R S K+++ L+++ S +
Sbjct: 736 NLPET-PSCFQIRMGGCKGVVVTWPDVPPSEVHVRPSQEKFKAVYNGLEIIKTSAFSHAT 794
Query: 392 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL 451
LN+Q+I +L LG+ +F + + + L D ++A E L T + +
Sbjct: 795 LNKQVIPVLVALGVDKSVFVSMLDSELTEYEEALADSMRAGELLRSQVDENQTTLTLAEM 854
Query: 452 ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL--------- 502
+ + EPFL +L+ ++ L L+ K I + N + G +DE L
Sbjct: 855 VDTFMDSEEPFLWTLLRLWKCWVLKRLKQKFAISVKNSAMVFGVVDEIGVLRGHSQATEG 914
Query: 503 -------NYGQVFVQISGAGYRQLHGESSLFSSSRSRQRF-IVQGLVVVAKNPCLHPGDV 554
+ Q+F+Q+ G S +S + ++ GL VV +NP LHPGDV
Sbjct: 915 RRDNNIESLPQIFLQVPVEG-----------SDGKSTTNYEVITGLCVVGRNPSLHPGDV 963
Query: 555 RVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ-DPPM 613
RV++AV+ L H+ + VVFP+ G R P+ CSG D+DGD YFV WD+ LIP + PP+
Sbjct: 964 RVVEAVDALELRHLKNVVVFPRTGDRDIPSMCSGGDMDGDDYFVYWDERLIPLEWYHPPL 1023
Query: 614 DYTPAQS---MQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQ 670
D+ S + DV IEDV +F Y+ NDSLG IA AH AD+ ++ C++
Sbjct: 1024 DHDAESSTPGLDKPEDVTIEDVTRFFAQYMKNDSLGRIATAHFAQADQLSGGVKNPKCIE 1083
Query: 671 LAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPH 730
LA+ S AVD+ K+G PA + HL +++P +ME+ K +Y S + +G+++ +K H
Sbjct: 1084 LAKLHSKAVDYIKSGKPAVMQRHLQPRKWPHWMEREKKSSYPSVSALGQIYNRIKIEEFH 1143
Query: 731 TSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIK-TEAEIL 789
+ F + R D D + +A K YD + LM + TE EI
Sbjct: 1144 AAYEMPFDVRILSRYQLED-------DTLAEAGKIKEAYDIAMRRLMGQHEAPVTEFEIW 1196
Query: 790 TGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKAS-------- 841
+ I+ + + + E +G + AL++ RA + +T+ + +S
Sbjct: 1197 STFILSKPRVGSDYKLQENVGREMAALKERFRAECMTAATGNTQAQEFTFSSSMVNLEKL 1256
Query: 842 -----AWYHVTYHPDYWGCYNQGMNR-DH----------FLSFPWCVYDRLVEI 879
A Y VT++ + M R DH +SFPW + L +
Sbjct: 1257 DRFVAAMYTVTHNEVRAAARERSMPRPDHDGEPEEVQMPLISFPWLFHRELARV 1310
>gi|346325393|gb|EGX94990.1| RNA-directed RNA polymerase (Sad-1) [Cordyceps militaris CM01]
Length = 1102
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 274/890 (30%), Positives = 425/890 (47%), Gaps = 98/890 (11%)
Query: 50 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 109
I L + + +++ + V G + LD+ F + A + ++ LD + +
Sbjct: 132 IYLDFAVRYRLEVCVSRGYLREYALDAVFLEKL----ASLDVAKASRMLDYIADQELQVE 187
Query: 110 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 169
+P + D K++ + +K P V +V +TP+ + P + SNRV+R
Sbjct: 188 DPMQIFEDA--KFLCAPAKKRIPHYC-----SLVLKVNITPTCLKLNLPNVESSNRVMRK 240
Query: 170 FRRDIDNFLRISFIDE-DLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 228
+ D FLR+ F+ E + D+I + ++ R+L L GI IGDR
Sbjct: 241 YNNLHDRFLRVQFLSETESDRI----------AKDRYNNDDVWKRLLRALHKGIRIGDRT 290
Query: 229 FEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 288
+EFLAF +SQLRE S F L+ +IR+W+GNF IRN+AK+ AR+GQ FS+++E
Sbjct: 291 YEFLAFGNSQLREGSVTFFCPTAYLSCDDIRKWLGNFDHIRNIAKFGARIGQCFSTTREV 350
Query: 289 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK-DNPPSAFQIRYG 347
+ + + +I D++ E FSDG+G +S + V + L PSAFQ R G
Sbjct: 351 RGIRVPTVRLIDDIETE----GECFSDGVGIISGLLGKLVVDEMKLDVVGEPSAFQFRMG 406
Query: 348 GYKGVVAADPTSSKK---LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLG 404
G KGV+A P K + +R S K+ +E L+++ +K LNRQ I +L LG
Sbjct: 407 GAKGVLAVWPREYAKHMEVCVRKSQIKFTTEANTLEIVKCAKTTTATLNRQTIIILEHLG 466
Query: 405 IWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAEPFL 463
+ F + ++Q + +TD A + L + + + T I+ ELL ++ +PF+
Sbjct: 467 VSCGAFLELLNAHIKQYEEAMTDRTAAIDLLTKFVDENQTTVIIAELLKADFQ---DPFV 523
Query: 464 SMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL----------------NYGQV 507
+L+ +R+ L ++ K RI + +MGC+DET TL + Q+
Sbjct: 524 KNLLKLWRSWSLKLMKEKCRIHVEKSAFVMGCVDETGTLQGHSKKTEGSNTKRMDDLPQI 583
Query: 508 FVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH 567
F+QIS YR + I++GL ++ +NP LH GD+RV++AV++ L H
Sbjct: 584 FLQISNRKYRN--------------KTTIIKGLCLIGRNPSLHAGDIRVVQAVDMQCLRH 629
Query: 568 MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD-PPMDYTPAQSMQLDHD 626
+ D VVFP KG R P+ SG DLDGD YFV W+ L+P + PPM P LD D
Sbjct: 630 LKDVVVFPSKGDRSLPSMLSGGDLDGDDYFVIWEPTLMPKVWNTPPMHSEPVNPQNLDRD 689
Query: 627 VQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGV 686
V++ D+ + Y+ ND LG+IA +H AD+ + S CLQLAE S AVD+PKTG+
Sbjct: 690 VEVNDLRNFVVKYMKNDFLGLIAYSHLAHADK--KGVNSPMCLQLAELHSQAVDYPKTGI 747
Query: 687 PAEIPPHLYV-KEYPDFMEKPDKPTYESQNVIGKLFRAVK----DIAPHTSCIRLFTKEV 741
PAE Y KE+P FM+ P TY S+ +GKL+ V D P SC F V
Sbjct: 748 PAEWTRAKYQPKEWPHFMQ-PKSRTYHSRRALGKLYDRVAHENFDYVP--SCEDEFDSRV 804
Query: 742 ARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFT 801
++ + D D + A K YD L+ + + TE E+ +G M +
Sbjct: 805 SQGIHLTD-------DILAIARDIKTEYDQAARRLLKQFRLATEFELYSGWAMSKPAVGS 857
Query: 802 KRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMN 861
+ E +G AL++ R + +G +A Y VT D C+
Sbjct: 858 DYKRQEDLGQQFGALKQRFRDMCIQAAGEAGGGQLEVLVAAMYKVTQ--DEVKCFLAAAE 915
Query: 862 RDH---------FLSFPWCVYDRLVEIKKDKTSIGNAFPALEQQFRQGLR 902
+ FPW + LV+I ++G + LE +R
Sbjct: 916 GGDLTCSSKPMPLIGFPWIFHWVLVKI-----AMGRDYKPLETSLAAAVR 960
>gi|169595008|ref|XP_001790928.1| hypothetical protein SNOG_00237 [Phaeosphaeria nodorum SN15]
gi|111070612|gb|EAT91732.1| hypothetical protein SNOG_00237 [Phaeosphaeria nodorum SN15]
Length = 1523
Score = 370 bits (950), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 261/790 (33%), Positives = 406/790 (51%), Gaps = 77/790 (9%)
Query: 50 IALPYEILFKINLLVQNGCVAGPLLDSNFY-RLV-DPYRAPVSISCIEHALDKLYHLKEC 107
I L + I +++ + NG + + + F RL +P RA + +E +DK +E
Sbjct: 526 IYLSFPIRYQLEACLSNGYLKEHTVTAEFLERLAKNPRRA---VYLLEKVVDK----QET 578
Query: 108 CYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVL 167
Y+P + R + + P+ L +TPS ++ P + SNR+
Sbjct: 579 YYDPMEIFEIRTRGSLEKKV----PSYCL-----LQRSAIITPSTIHVASPIMETSNRIT 629
Query: 168 RHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDR 227
R + D FLR+ F DE + + + P G + D T + R+ ++NGI++ R
Sbjct: 630 REYAAIADRFLRVKFSDEKTEGVLRS--IPNGKA--DAT----FDRVRRAMKNGIVVAGR 681
Query: 228 KFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKE 287
+EFLAF +SQ RE A+ +A +A +IR +G F I+ VAK+ ARLGQ FS+++
Sbjct: 682 YYEFLAFGNSQFREHGAYFYAPTSTKSADDIRSSLGRFDHIKTVAKFGARLGQCFSTTR- 740
Query: 288 TLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQI 344
+ V + ++I PD++ + Y F+DG+GK+S A+ A + GL D+PPS +Q
Sbjct: 741 AMRVKVTIVKI-PDIE----RNGYCFTDGVGKLSLFLAQMAAQELGLSNAFDDPPSLYQF 795
Query: 345 RYGGYKGVVAADP-TSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTL 403
R GG KGV+A DP + ++ +R S K+E++ L+++ S F NRQ+I +LS L
Sbjct: 796 RLGGCKGVLALDPKITGNEVHIRPSQLKFEAKFLGLEIIRSSALATPFFNRQIIVVLSDL 855
Query: 404 GIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAEPF 462
G+ D + +KQ+E V + +TD A L + + + T + ++I G+ EPF
Sbjct: 856 GVPDNVLIQKQQEMVNDYEQAMTDKDTAIAKLRKHIDMNQTTLTMAGMVIDGFMESREPF 915
Query: 463 LSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQ--LH 520
+ +L+ +RA+ + L+ K RI I +G ++GC+DE+ TL Q RQ +
Sbjct: 916 MMSLLRLWRAATIKNLKEKARIAIEDGAFVLGCVDESGTLKGHLNDPQSRSDASRQDKMQ 975
Query: 521 GESSLF-----SSSRSRQRF-IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVF 574
+F + + R + IV+G+ V+A+NP LHPGD+RV++AV+VPALHH+ + VV
Sbjct: 976 TLPEIFLQVDDTEANKRGHYKIVKGVCVLARNPSLHPGDLRVVRAVDVPALHHLKNVVVL 1035
Query: 575 PQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEE 634
PQ G R N CSG DLDGD Y V WD +LIP + + D+ +
Sbjct: 1036 PQTGDRDLANMCSGGDLDGDDYMVLWDKDLIPEL------------------ITLSDISD 1077
Query: 635 YFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHL 694
+F Y+ NDSLG IA AH AD S CL+LA+ S AVD+PK+G+PA++ L
Sbjct: 1078 FFVTYMQNDSLGQIAYAHLAQADVNHEGVGSGTCLELAKLHSQAVDYPKSGIPAQMSQDL 1137
Query: 695 YVKEYPDFMEKPD---KPTYESQNVIGKLFRAVK--DIAPHTSCIRLFTKEVARRSYDPD 749
K +P FMEK Y S V+GKL+ V+ D P F R D
Sbjct: 1138 RPKRWPHFMEKKHLQAHKIYRSTRVLGKLYDQVELVDFKPQWENAFDF------RILDA- 1190
Query: 750 MEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAI 809
EVD E+ + A K YD LM +GI+TE E + ++ ++ + AE
Sbjct: 1191 YEVD--EELLSKATDIKALYDEAFKRLMAKHGIRTEFEAWSVFVLAHNQESRDYKFAEEF 1248
Query: 810 GMAVRALRKE 819
G + AL+ +
Sbjct: 1249 GRTMGALKAQ 1258
>gi|19114207|ref|NP_593295.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces pombe 972h-]
gi|59800170|sp|O14227.1|RDR1_SCHPO RecName: Full=RNA-dependent RNA polymerase 1; Short=Protein rdp1
gi|2330856|emb|CAB11093.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces pombe]
Length = 1215
Score = 364 bits (935), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 245/785 (31%), Positives = 401/785 (51%), Gaps = 56/785 (7%)
Query: 141 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 200
+++ ++ VTP+ + + NRV+R+F+ + F+R+ DE + RG
Sbjct: 452 IHIKKLYVTPTTLRIVEDSLEAGNRVIRNFKDFANRFMRVQITDEYYKQ------KIRGG 505
Query: 201 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIRE 260
S ++Y+RI L GI +G++ +EFLAF +SQLRE A+ FAS L A +IRE
Sbjct: 506 S-DGFRNEKLYSRIQQLLTYGIKVGNQIYEFLAFGNSQLREHGAYFFASGSDLNAKQIRE 564
Query: 261 WMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKV 320
WMG+F EI +V+KYAAR+GQ FS++KE ++ + ++ +I + + F+DG+G
Sbjct: 565 WMGDFSEINSVSKYAARMGQCFSTTKE-----INRFCVDISLQDDIVRNNHCFTDGVGMA 619
Query: 321 SAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL------RDSMRKYES 374
S R+++ + D PSAFQ R GGYKGV++ P + + R S K++S
Sbjct: 620 SLSVIRRLSLEVKNHDMFPSAFQFRMGGYKGVLSLAPPTKLEYHQGNLVFPRRSQDKFKS 679
Query: 375 ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEA 434
+ L+V+ S++ LN QLI+LL LG+ +F + R + +++ + K+
Sbjct: 680 FHSTLEVIKISRFSNAHLNMQLITLLEGLGVEKTVFLELTRSQLSKMNESINSKQKSILM 739
Query: 435 L-ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 493
L + + +T I+ + + G+ + F +L + L ++ K ++ +P G ++
Sbjct: 740 LRDNVDEYHSTLIIADFIQAGFLERDDAFTENLLNLYYEWVLRLIKEKQKVSVPKGAYLL 799
Query: 494 GCLDETRT---------LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 544
G DET T L+ ++F+QI+ +S+ + + R IV GL +VA
Sbjct: 800 GVADETGTLKGHYDDAVLSVPEIFIQITDTS-----TSFGSYSTGKLKTRVIV-GLCIVA 853
Query: 545 KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDEL 604
+NP LHPGDVRV KAV L H+ + +VFP G R P CSG DLDGD Y V WD L
Sbjct: 854 RNPSLHPGDVRVCKAVRCDELMHLKNVIVFPTTGDRSIPAMCSGGDLDGDEYTVIWDQRL 913
Query: 605 IPPQQD--PPMDYTPAQSMQ-LDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFA---DR 658
+P + P ++ +P +S+ L+ I+ V+E+F NYI DSLG+I+NA +A D
Sbjct: 914 LPKIVNYPPLLESSPKKSIDFLEGKPLIDSVKEFFVNYIKYDSLGLISNAWKAWAHDHDN 973
Query: 659 EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIG 718
P CL+LAE S AVDF K+GV ++ + K YPDFM+K ++ S+ +G
Sbjct: 974 NPEGIFGNVCLELAEMHSKAVDFAKSGVACKMQAKYHPKRYPDFMQKTKTRSFRSETAVG 1033
Query: 719 KLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFE-DHIDDAIYHKGNYDYKLGNLM 777
K+FR + + + YDP M++ F+ ++++ A K +YD L ++M
Sbjct: 1034 KIFRYAARFQRESGRPATYN-PIMNTVYDPCMKLPRFKTEYLNVAEEVKKHYDNDLRSIM 1092
Query: 778 DYYGIKTEAEILTGSIM---KMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSG----- 829
+ I TE E+ T I+ ++K+ + E + L+K+ + EK
Sbjct: 1093 ARFDISTEYEVYTAFILFKDDLAKTVNEYGLREEVSFQFDLLKKKYTQEYLEKCALSNQS 1152
Query: 830 ----SDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTS 885
S+ E+ + +A Y VTY N + +SFP+ RL ++ +
Sbjct: 1153 AFDSSEYEERINSAVAATYDVTYDQRVKSVGNG--TTEVLISFPYLFSSRLCQLSRKAML 1210
Query: 886 IGNAF 890
N F
Sbjct: 1211 TANNF 1215
>gi|151370755|gb|ABS11001.1| RNA-dependent RNA polymerase 1 [Nicotiana clevelandii]
Length = 243
Score = 354 bits (909), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 177/245 (72%), Positives = 204/245 (83%), Gaps = 2/245 (0%)
Query: 191 HSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASR 250
HSTDL PR S+ I RT IY RILSTLRNG +IGD++FEFLAFSSSQLR++S WMFASR
Sbjct: 1 HSTDLLPRASTGNGI-RTDIYLRILSTLRNGFVIGDKRFEFLAFSSSQLRDNSVWMFASR 59
Query: 251 YGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK 310
GLTA +IR+WMG F++IRNVAKYAARLGQSF SS+ETLSV E+E+IPDV + T
Sbjct: 60 PGLTANDIRKWMGEFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTN 119
Query: 311 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMR 370
Y+FSDGIGK+SA+FAR+VA KCGL+ P S FQIRYGGYKGVVA DP SS KLSLR+SM
Sbjct: 120 YIFSDGIGKISADFARRVAIKCGLQYTPFS-FQIRYGGYKGVVAVDPYSSMKLSLRNSML 178
Query: 371 KYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 430
KYES KLDVL WSKYQPC+LNRQL++LLSTLG+ D++FE+KQ EAV QLDAIL D LK
Sbjct: 179 KYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDSLK 238
Query: 431 AQEAL 435
AQEAL
Sbjct: 239 AQEAL 243
>gi|105990552|gb|ABF81698.1| RNA-dependent RNA polymerase [Zea mays]
Length = 459
Score = 349 bits (895), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 179/397 (45%), Positives = 262/397 (65%), Gaps = 9/397 (2%)
Query: 34 YSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISC 93
+ S ++VP+V P+G ++PYE+LF++N LV G + ++++ +++++ +SI
Sbjct: 65 FGSSSNVVPLVDCPNGFSVPYEVLFRLNSLVHMGKLVARHVNADLFKVLED----LSIDT 120
Query: 94 IEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRV 153
+ +K+ LK CYEP +++ + M R K S L+ +R+ +TPS++
Sbjct: 121 LRRIFEKMSKLKSTCYEPLQFIRHEAHS-MNMRKKALSNKRE-SGKLMRCYRIHITPSKI 178
Query: 154 YFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA--TDITRTRIY 211
Y GPE VSN V+++ +F R++F+DED K+ LS R + +T +Y
Sbjct: 179 YCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALSARTEQGFFSKPLKTGLY 238
Query: 212 TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNV 271
RILS L+ G IG +K+EFLAFS+SQLR +S WMFAS LTA IR WMG+F +IR+V
Sbjct: 239 HRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNSSLTAENIRRWMGHFEDIRSV 298
Query: 272 AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASK 331
+K AAR+GQ FSSS++T V ++E+IPD+++ TKY+FSDGIGK+S FAR+VA
Sbjct: 299 SKCAARMGQLFSSSRQTFEVSSYDVEVIPDIEVTTDGTKYIFSDGIGKISTRFARQVAKL 358
Query: 332 CGLK-DNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPC 390
GL +PPSAFQIRYGGYKGV+ DPTS LSLR SM+K+ES+ T L++ WSK QPC
Sbjct: 359 IGLDPAHPPSAFQIRYGGYKGVITIDPTSFFNLSLRPSMKKFESKSTMLNITNWSKSQPC 418
Query: 391 FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 427
++NR++ISLLSTLGI DE FE Q++ + + D +LT+
Sbjct: 419 YVNREIISLLSTLGIKDEAFESMQQDDMHESDGMLTN 455
>gi|302420105|ref|XP_003007883.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261353534|gb|EEY15962.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 1465
Score = 346 bits (888), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 234/730 (32%), Positives = 357/730 (48%), Gaps = 91/730 (12%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
V +V VTP+ +Y P + SNRV+R ++ D FLR+ F DE + +S R
Sbjct: 490 VRKVVVTPTTIYLSSPGVEASNRVIRKYQHVSDRFLRVQFTDE----LTRGRISTRAKME 545
Query: 203 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM 262
D ++ R+ T+ NGI IGDR ++FLAF +SQ+RE A+ F L E+R+WM
Sbjct: 546 LD---HYVFKRVYLTMINGIRIGDRHYKFLAFGNSQIRECGAYFFCETVHLKCTEMRQWM 602
Query: 263 GNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSA 322
GNF I VAK+AARLGQ FS+++E S+ I+IIPD++ + + F+DG+GK+S+
Sbjct: 603 GNFNHIHIVAKFAARLGQCFSTTREIRSIRAPNIQIIPDIE----RNGHCFTDGVGKISS 658
Query: 323 EFARKVASKCGLKD-NPPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLD 380
A V + GL+ PSAFQ R GG KGV+A P + + +R S K+++ L+
Sbjct: 659 FLASMVLEEMGLETVETPSAFQFRMGGCKGVLAVWPEAKGMYVHIRKSQEKFKATFNGLE 718
Query: 381 VLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSP 440
++ +++ LNRQ I++L++LGI E+F + + + + D A L
Sbjct: 719 IIRCARFSAATLNRQTITILTSLGIKSEVFMDLLQRQLHSYEKAMNDQGAAAVLLGRHID 778
Query: 441 GENTNI-LKELLICGY-KPDA-EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLD 497
+T++ L++L+ G+ + D EPF+ +LQ +R + LR K RI + G ++GC+D
Sbjct: 779 ENHTSLALRDLINWGFMRHDVQEPFVLTILQLWRVWSMKLLRDKARIVVDKGAFVLGCVD 838
Query: 498 ETRTLN-----------------YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL 540
ET TL Q+F+QI R +++G+
Sbjct: 839 ETATLRGHNRASEGQTTSRNVELLPQIFLQIPDPDDRHFFN--------------VIKGV 884
Query: 541 VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCW 600
+V +NP LHPGD+RV++AV+VP L HM + VVFP G P+ SG DLDGD +FV W
Sbjct: 885 CIVGRNPSLHPGDIRVVEAVDVPQLRHMKNVVVFPSTGDVDVPSMLSGGDLDGDDFFVIW 944
Query: 601 DDELIPPQQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADRE 659
D +LIPP + PMD Q+ LD DV +D+
Sbjct: 945 DPDLIPPVWNFRPMDNAAPQTKVLDRDVNTKDL--------------------------- 977
Query: 660 PRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFM--EKPDKPTYESQNVI 717
LQLA+ S AVD+ K+G PAE+ L + +P FM + Y S +
Sbjct: 978 --------SLQLAKLHSKAVDYVKSGDPAELGRELRARRWPHFMGGRRNKNSIYHSYTAL 1029
Query: 718 GKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLM 777
G+++ ++D+ + + F + + R D V + A K YD + LM
Sbjct: 1030 GQIYDRIQDVPFNPLYEKKFDRRILTRFAPIDNAV------LKQARRLKSTYDTAMRRLM 1083
Query: 778 DYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAY 837
+ TE EI TG + + + +E IG L++ R G D
Sbjct: 1084 AQREVSTEFEIWTGFPLSRPRVGNAYKHSEDIGRDAGLLKQSFRDEVHALVGGSGYDKVA 1143
Query: 838 AKASAWYHVT 847
+A Y VT
Sbjct: 1144 PFVAAMYQVT 1153
>gi|170582151|ref|XP_001896001.1| RNA dependent RNA polymerase family protein [Brugia malayi]
gi|158596891|gb|EDP35156.1| RNA dependent RNA polymerase family protein [Brugia malayi]
Length = 1475
Score = 343 bits (881), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 261/846 (30%), Positives = 408/846 (48%), Gaps = 134/846 (15%)
Query: 135 SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTD 194
S D+G V + +TP+R+ PE+ + NRVLR F D+ LRI F D+D +
Sbjct: 462 SADEGFQRVRKAVITPTRMLLVIPELLMGNRVLREFDESGDDALRIQFRDDDGAHLR--- 518
Query: 195 LSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLT 254
R + I T ++ +L G+ I DR F +LA S+SQ+R++ + F
Sbjct: 519 ---RSRAGLYIIETTVHNSLL----RGVYISDRHFVYLASSNSQMRDNGCYFFNDGDDGK 571
Query: 255 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKET-LSVHMDEIEIIPDV---KIEIGKTK 310
IR+ +G F N+ K +R+GQ F+ SKET +++ + DV K G+
Sbjct: 572 VKMIRDKLGKFDHT-NIPKLMSRMGQCFTQSKETDVTLKRRKYNKTHDVIGGKDSCGEP- 629
Query: 311 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK-------- 362
++FSDG+GK+S +FA ++A+ GL PS FQ RY G KGV++ DP ++
Sbjct: 630 FIFSDGVGKLSEDFAEQIANDLGLAKCVPSCFQFRYRGLKGVLSVDPALRQRRLWAERNG 689
Query: 363 ---------------LSLRDSMRKYESELTKL-DVLAWSKYQPCFLNRQLISLLSTLG-- 404
+ R S K+ + ++ +++ +S +LNR LI++L +
Sbjct: 690 LEDKHAKTAKVNDLDIIFRPSQDKFHAPRKEIIEIVKYSSPTSVYLNRPLINILDQVSDM 749
Query: 405 --------IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYK 456
I + I R+ ++ DA++++ + +E L N L + G+
Sbjct: 750 QGFDVHSRIVNRIHGLLDRQLLKLSDALMSED-RCRERLAEFPRRINVQYLS--VARGFT 806
Query: 457 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISGA 514
EPF +L L + +K I IP GR+M G LDET L YGQVFVQ +
Sbjct: 807 LTQEPFFHGLLIASVRFTLQKQLSKEHIQIPANLGRTMFGILDETGLLQYGQVFVQFTND 866
Query: 515 GYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVF 574
+ L + ++ + IV+G V++ KNP + GDVR+ +AV++P L H+VD VVF
Sbjct: 867 VF--------LKTPPKAAAKTIVKGFVLITKNPSIVAGDVRIFEAVDLPELRHLVDVVVF 918
Query: 575 PQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYT----PAQSMQLDHDVQIE 630
PQ G RPH +E +GSDLDGD Y V WDD+++ + PMD++ P ++ D V+
Sbjct: 919 PQHGPRPHTDEMAGSDLDGDEYSVIWDDQMLFSHNEEPMDFSKLIRPPDILKEDEVVR-- 976
Query: 631 DVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAE- 689
++ ++ Y++ DS+GIIANA V +D S+ C+ +AEK S +VDFPKTG P +
Sbjct: 977 EMRRFYVEYVMQDSIGIIANAFLVNSD--TFGIASDVCMSIAEKHSQSVDFPKTGQPPKP 1034
Query: 690 -------------IPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRL 736
IPP + +PDFM K +P+Y S ++G+LFR ++ I + R
Sbjct: 1035 LVKEWSNGPDGKMIPPE-RPERWPDFMCKTHEPSYVSTRLVGQLFRRIRLIDDVLTITRA 1093
Query: 737 FTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKM 796
+ ++ + DP +E G+E + +DA + Y + LMD YGI+ E ++ +G K+
Sbjct: 1094 HETQ-SKVTVDPLLEYSGWESYENDATLNLIAYSAHIRALMDNYGIEDECQLYSGCFCKV 1152
Query: 797 ---------------SKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDD------ 835
+ SF R I M R A F + +DD
Sbjct: 1153 RNRISDRDGDDMSQFNTSFIIERKLTNIFMCFRC---NFFAEFGDFMSCTQQDDDLRNKD 1209
Query: 836 -------------AYAKASAWYHVTYHPDYWGCYNQGMNR--DHFLSFPWCVYDRLVEIK 880
KASA+Y V CY + M + LSFPW V+D L +IK
Sbjct: 1210 VIERRYCKYPTVEMKKKASAYYIV--------CYRKVMKEKGERLLSFPWIVWDILADIK 1261
Query: 881 KDKTSI 886
K+ +
Sbjct: 1262 KENAVL 1267
>gi|268530338|ref|XP_002630295.1| C. briggsae CBR-RRF-3 protein [Caenorhabditis briggsae]
Length = 1766
Score = 340 bits (873), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 252/835 (30%), Positives = 410/835 (49%), Gaps = 85/835 (10%)
Query: 118 QYRKYMTSRS-KPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN 176
QY + + S + A L V V +V V+PSRV PE+ + NRV+R F D
Sbjct: 654 QYERLLNGESLQDVGLARPLPKNCVSVAKVIVSPSRVLLMAPEVMMVNRVVRRFGPDYA- 712
Query: 177 FLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSS 236
LR F D++L ++ D S + D + I +TL+NGI + DR + FL +S+
Sbjct: 713 -LRCVFRDDNLGRLAIRDFS---INNIDHMSNVVTEAIYNTLKNGIQVADRHYSFLGWSN 768
Query: 237 SQLRESSAWMFASRY-------GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 289
SQ+R+ +++A R T +IR WMG+FRE +V K +R+GQ F+ ++ T+
Sbjct: 769 SQMRDQGCYLYAPRVDPISGKVSGTVEDIRVWMGDFREAVSVPKMMSRMGQCFTQAQPTV 828
Query: 290 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGY 349
+ + PD++ G K+ FSDG G++S + A ++ K LK+ P+ FQ+R+ G+
Sbjct: 829 KLARHHWLVEPDMEGGPG-NKFCFSDGCGRISYKLAGQITRKLKLKE-IPACFQVRFKGF 886
Query: 350 KGVVAADPT-----SSKKLSLRDSMRKY-----ESELTKLDVLAWSKYQPCFLNRQLISL 399
KG++ DPT + K+ R S +K+ + + L+V+ ++ P LNR +++
Sbjct: 887 KGILVIDPTIDDIINMPKVIFRKSQQKFGEGGGDQQDESLEVVKYAMPSPVCLNRPFVTI 946
Query: 400 LSTLG----------IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKE 449
L + I + + +RE + +L + A+E + + + N+ +
Sbjct: 947 LDQVSKKQSAKCHQRITNRVHYYLERELSSLSNMLLNENQAAEELVNRTNLPIDWNLASK 1006
Query: 450 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQV 507
G++ +P + ML ++ +K +IF+P GRSM G +DET L YGQV
Sbjct: 1007 R--AGFQLSVDPLIRSMLFAIYRYNIIHHISKAKIFLPPSLGRSMYGVVDETGLLQYGQV 1064
Query: 508 FVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH 567
F+Q S RQ E L + G V++ KNPC PGDVRV AV PAL H
Sbjct: 1065 FIQYSPT-IRQTSPEPLLKT-----------GKVLITKNPCHVPGDVRVFDAVWQPALAH 1112
Query: 568 MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDV 627
+VD VVFP+ G RPHP+E +GSDLDGD Y + WD E++ + M + +Q+ + D +
Sbjct: 1113 LVDVVVFPRHGPRPHPDEMAGSDLDGDEYSIIWDQEMLLDYNETAMVFPSSQAQEEDKEP 1172
Query: 628 QIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVP 687
+D+ E+F Y+ DS+G ++NAH V+AD SE C +A+K ++AVDFPK+GVP
Sbjct: 1173 TTDDMVEFFLRYMQQDSIGRMSNAHLVYADLH--GLFSENCASIAQKCAVAVDFPKSGVP 1230
Query: 688 AE-IPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDI----APHTSCIRLFTKEVA 742
AE + PD+M KP Y S ++ G+L R + + + S +F E
Sbjct: 1231 AEPLTGFEQCDVTPDYMMSGGKPMYYSASLNGQLHRKARKVEEVLEEYESKGSIFEGEYD 1290
Query: 743 RRSYDPDMEV-DGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFT 801
+ D +V G E + + + Y ++ L+D YGI+ EA +++G + +
Sbjct: 1291 KMICPDDADVFFGSEPKLVQTMNIRDEYIDRMQQLLDEYGIEDEASVVSGHAASIKRLAG 1350
Query: 802 KRRD-------AEAIGMAVRALRKEARAWFKEKSGSD---TEDDA-----------YAKA 840
RD + + + L RA F E+ G + T +D + K
Sbjct: 1351 MERDDYSFYHTDKVVELRYEKLYSVFRAKFFEEFGGEEAHTVNDGKGSRVVCIPAMHEKV 1410
Query: 841 SAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKD-KTSIGNAFPALE 894
WY Y + + + S PW +D L ++++ I +A P ++
Sbjct: 1411 RQWYFAAYVQPKKNKTGKYIGQ----SLPWVAWDVLCDLRRTLMLQIDDAIPRVK 1461
>gi|341885460|gb|EGT41395.1| CBN-RRF-3 protein [Caenorhabditis brenneri]
Length = 1736
Score = 340 bits (872), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 253/835 (30%), Positives = 409/835 (48%), Gaps = 85/835 (10%)
Query: 118 QYRKYMTSRS-KPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN 176
QY + ++ S + A L V V +V VTPSR+ PE+ + NR++R F D
Sbjct: 623 QYERLLSGESLQDVGLAKPLPKNCVQVAKVIVTPSRILLMAPEVMMVNRIVRRFGPDYA- 681
Query: 177 FLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSS 236
LR F D++L ++ D S + D + I +TL+ G+ + DRK+ FL +S+
Sbjct: 682 -LRCVFRDDNLGRLAIRDFS---VNNIDHLSNIVTESIFNTLKYGVQVADRKYSFLGWSN 737
Query: 237 SQLRESSAWMFA-------SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 289
SQ+R+ +++A R T EIR+WMG+FRE +V K +R+GQ F+ ++ T+
Sbjct: 738 SQMRDQGCYLYAPRVDPATGRVSGTVEEIRKWMGDFREAVSVPKMMSRMGQCFTQAQPTV 797
Query: 290 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGY 349
+ + PDV+ + KY FSDG G++S + A + LK+ P + FQ+R+ G+
Sbjct: 798 RLERRHWIVEPDVEGGLSG-KYCFSDGCGRISVKLANHITRILELKETP-ACFQVRFKGF 855
Query: 350 KGVVAADPT-----SSKKLSLRDSMRKY-----ESELTKLDVLAWSKYQPCFLNRQLISL 399
KG++ DPT K+ R S +K+ + + L+V+ ++ P LNR I++
Sbjct: 856 KGILVIDPTIDDIIGMPKVIFRKSQQKFGEGGGDQQDEYLEVVKYAMPSPVCLNRPFITI 915
Query: 400 LSTLG----------IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKE 449
L + I + I +RE + +L + A+E + + + N K
Sbjct: 916 LDQVSAKQSASSHRRITNRIHYYLERELCSLSNMLLNENQAAEELVNRTNLPIDWN--KA 973
Query: 450 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQV 507
G++ +P + ML + ++ +K +IF+P GRSM G +DET L YGQV
Sbjct: 974 SKHAGFQLSKDPLIRSMLFSIYRYNIIHHISKAKIFLPPDLGRSMYGVVDETGLLQYGQV 1033
Query: 508 FVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH 567
F+Q S + RQ S + G V++ KNPC PGDVRV +AV PAL H
Sbjct: 1034 FIQYSQS-IRQT-----------SATPILKTGKVLITKNPCHVPGDVRVFEAVWQPALAH 1081
Query: 568 MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDV 627
+VD VVFP+ G RPHP+E +GSDLDGD Y + WD E++ + M Y + + + D +
Sbjct: 1082 LVDVVVFPRHGPRPHPDEMAGSDLDGDEYSIIWDQEMLLDYNEEAMIYPSSTAPEEDKEP 1141
Query: 628 QIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVP 687
+D+ E+F Y+ DS+G ++NAH +AD E C +A K ++AVDFPK+GVP
Sbjct: 1142 TTDDMVEFFLRYLQQDSIGRMSNAHLTYADLH--GLFHENCRNIALKCAVAVDFPKSGVP 1199
Query: 688 AE-IPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDI----APHTSCIRLFTKEVA 742
AE + + PD+M KP Y S + G+L R + + + + +F E
Sbjct: 1200 AEPLASFEQCEMTPDYMATGGKPMYYSPRLNGQLHRKARKVEEVLEEYETRGSIFEGEYD 1259
Query: 743 RRSYDPDMEV-DGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFT 801
+ D +V G E + A+ + Y ++ L+D YGI+ EA +++G + +
Sbjct: 1260 KIICPDDADVFFGSEAKLVQAMMIRDEYIDRMQQLLDEYGIEDEASVVSGHAASIKRLAG 1319
Query: 802 KRRD-------AEAIGMAVRALRKEARAWFKEKSGSDTE---DDAYA-----------KA 840
RD + + + L RA F E+ G + +D K
Sbjct: 1320 MERDDYSFYHTDKIVELRYEKLYHVFRAKFFEEFGGEAAHLVNDGSKMRLNCTKAMREKV 1379
Query: 841 SAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKD-KTSIGNAFPALE 894
WY V+Y + + + S PW V+D L +++++ S NA P ++
Sbjct: 1380 RQWYFVSYVQPKKNKTGKFIGQ----SLPWVVWDALCDLRRELMVSKTNAIPRVK 1430
>gi|118386404|ref|XP_001026321.1| RNA dependent RNA polymerase family protein [Tetrahymena thermophila]
gi|89308088|gb|EAS06076.1| RNA dependent RNA polymerase family protein [Tetrahymena thermophila
SB210]
Length = 1439
Score = 338 bits (868), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 240/759 (31%), Positives = 370/759 (48%), Gaps = 124/759 (16%)
Query: 137 DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS 196
D ++ RV +TPS + + E+ +SNRVLR F+ D+F+R +F D+ L+
Sbjct: 546 DVKVIATRRVSITPSGLIYNLKELELSNRVLRIFQDSTDSFIRGTFQDDSLENAKHMKYV 605
Query: 197 PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAF--SSSQLRESSAWMFASRYGLT 254
+R + + L + + +L +EF+ F S+SQLR SS+W F L
Sbjct: 606 -----------SRYFRQKLKSFK--VL----NWEFINFGWSASQLRNSSSWFFHETEVLK 648
Query: 255 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI-----EIG-- 307
++ +G+F I AK +AR+GQ FSSS + IE I D+ E+
Sbjct: 649 KQDVITRIGDFSGINPPAKKSARIGQCFSSSTPYILKERPNIEFIDDITTPSAVQEVDAN 708
Query: 308 -------KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS 360
+ K VF+DGIG +S + RK++ L A Q+RYGG KGV+ D S
Sbjct: 709 GNICYFRQKKKVFTDGIGTISQDLIRKISD--HLNAFFMCAIQVRYGGAKGVLTIDYKSD 766
Query: 361 KK--LSLRDSMRKY----ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQ 414
KK + LR+SM KY E + +D+L +KY+ +LNRQ+I LL +LGI +E F + Q
Sbjct: 767 KKNTIQLRESMIKYKITDEQDELIIDILDRNKYRFGYLNRQVIILLRSLGIENEQFIQAQ 826
Query: 415 REAVRQLDAILTDPLKAQEALELMSPGEN---------TNILKELLICGYKPDAEPFLSM 465
+E + +L+ LK L + + T++L+ + + F
Sbjct: 827 QEYIEELNK---SALKDASIFTLFNTDYSKDGTRLFPITHLLRSMQTSRIDMAQDIFCKG 883
Query: 466 MLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSL 525
++ T + LR K+ IF+ +MG +DE L +VF IS E S
Sbjct: 884 VIHTLKKRGFYILRKKSNIFLKKSARLMGVIDEYNVLEQDEVFAYISQ------DSEKSF 937
Query: 526 FSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH------------MVDCVV 573
F V+G V+V KNPCLHPGD+R LKAV + + + + ++
Sbjct: 938 FQ---------VEGDVIVVKNPCLHPGDIRKLKAVTLETISQRLGEGKINPFKKLRNILI 988
Query: 574 FPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDY------TPAQSMQLDHDV 627
FPQKG P ++ +GSDLDGD YF+CWD IP +Q P +Y Q Q +D+
Sbjct: 989 FPQKGKEPITSQIAGSDLDGDCYFICWDQRFIPLEQKEPFNYDEDDNSQKKQISQEQYDI 1048
Query: 628 QI---------------------EDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSE 666
+I E + ++F ++I N++LG I N+H VFAD+ P A
Sbjct: 1049 EISKKPNTQFKTKNPVREVIDDNEQMLDFFIDFINNENLGKIDNSHLVFADKSPLYAEDP 1108
Query: 667 PCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKD 726
CL+LA + AVD+ KTG+ ++P +L +KEYPDFMEK DKP+Y+SQ+++G L+R VKD
Sbjct: 1109 KCLKLASLHAQAVDYAKTGISPQLPKNLAIKEYPDFMEKDDKPSYQSQSILGILYRQVKD 1168
Query: 727 IAPHTSCIRLFTKEVARRSYDPDMEVDG----------------FEDHIDDAIYHKGNYD 770
C + ++ D ++ + E ID AI ++
Sbjct: 1169 -QYEKHCKNDIEGDRSQTFIDNNLIFNPPTFVNEIVDEQENKTYLEQEIDFAIEANNQWN 1227
Query: 771 YKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAI 809
++ NL ++G + E EI TG+ K+ K K++ + I
Sbjct: 1228 IEINNLKQFFGAQNEFEIYTGNFSKLIKVERKKKMSAEI 1266
>gi|111610628|gb|ABH11712.1| RNA-dependent RNA polymerase [Tetrahymena thermophila]
Length = 1434
Score = 338 bits (867), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 240/759 (31%), Positives = 370/759 (48%), Gaps = 124/759 (16%)
Query: 137 DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS 196
D ++ RV +TPS + + E+ +SNRVLR F+ D+F+R +F D+ L+
Sbjct: 541 DVKVIATRRVSITPSGLIYNLKELELSNRVLRIFQDSTDSFIRGTFQDDSLENAKHMKYV 600
Query: 197 PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAF--SSSQLRESSAWMFASRYGLT 254
+R + + L + + +L +EF+ F S+SQLR SS+W F L
Sbjct: 601 -----------SRYFRQKLKSFK--VL----NWEFINFGWSASQLRNSSSWFFHETEVLK 643
Query: 255 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI-----EIG-- 307
++ +G+F I AK +AR+GQ FSSS + IE I D+ E+
Sbjct: 644 KQDVITRIGDFSGINPPAKKSARIGQCFSSSTPYILKERPNIEFIDDITTPSAVQEVDAN 703
Query: 308 -------KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS 360
+ K VF+DGIG +S + RK++ L A Q+RYGG KGV+ D S
Sbjct: 704 GNICYFRQKKKVFTDGIGTISQDLIRKISD--HLNAFFMCAIQVRYGGAKGVLTIDYKSD 761
Query: 361 KK--LSLRDSMRKY----ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQ 414
KK + LR+SM KY E + +D+L +KY+ +LNRQ+I LL +LGI +E F + Q
Sbjct: 762 KKNTIQLRESMIKYKITDEQDELIIDILDRNKYRFGYLNRQVIILLRSLGIENEQFIQAQ 821
Query: 415 REAVRQLDAILTDPLKAQEALELMSPGEN---------TNILKELLICGYKPDAEPFLSM 465
+E + +L+ LK L + + T++L+ + + F
Sbjct: 822 QEYIEELNK---SALKDASIFTLFNTDYSKDGTRLFPITHLLRSMQTSRIDMAQDIFCKG 878
Query: 466 MLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSL 525
++ T + LR K+ IF+ +MG +DE L +VF IS E S
Sbjct: 879 VIHTLKKRGFYILRKKSNIFLKKSARLMGVIDEYNVLEQDEVFAYISQ------DSEKSF 932
Query: 526 FSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH------------MVDCVV 573
F V+G V+V KNPCLHPGD+R LKAV + + + + ++
Sbjct: 933 FQ---------VEGDVIVVKNPCLHPGDIRKLKAVTLETISQRLGEGKINPFKKLRNILI 983
Query: 574 FPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDY------TPAQSMQLDHDV 627
FPQKG P ++ +GSDLDGD YF+CWD IP +Q P +Y Q Q +D+
Sbjct: 984 FPQKGKEPITSQIAGSDLDGDCYFICWDQRFIPLEQKEPFNYDEDDNSQKKQISQEQYDI 1043
Query: 628 QI---------------------EDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSE 666
+I E + ++F ++I N++LG I N+H VFAD+ P A
Sbjct: 1044 EISKKPNTQFKTKNPVREVIDDNEQMLDFFIDFINNENLGKIDNSHLVFADKSPLYAEDP 1103
Query: 667 PCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKD 726
CL+LA + AVD+ KTG+ ++P +L +KEYPDFMEK DKP+Y+SQ+++G L+R VKD
Sbjct: 1104 KCLKLASLHAQAVDYAKTGISPQLPKNLAIKEYPDFMEKDDKPSYQSQSILGILYRQVKD 1163
Query: 727 IAPHTSCIRLFTKEVARRSYDPDMEVDG----------------FEDHIDDAIYHKGNYD 770
C + ++ D ++ + E ID AI ++
Sbjct: 1164 -QYEKHCKNDIEGDRSQTFIDNNLIFNPPTFVNEIVDEQENKTYLEQEIDFAIEANNQWN 1222
Query: 771 YKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAI 809
++ NL ++G + E EI TG+ K+ K K++ + I
Sbjct: 1223 IEINNLKQFFGAQNEFEIYTGNFSKLIKVERKKKMSAEI 1261
>gi|164429758|ref|XP_964248.2| hypothetical protein NCU02178 [Neurospora crassa OR74A]
gi|157073607|gb|EAA35012.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 1049
Score = 338 bits (867), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 215/682 (31%), Positives = 344/682 (50%), Gaps = 83/682 (12%)
Query: 23 EDRFVLETGSAYSRSL--DLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYR 80
+DR+ + SRS D + PP I+LP+++ +++ + + G + +D F
Sbjct: 414 DDRYGHDIQQVSSRSWSNDFSLLAAPPR-ISLPFDVRYQLEVCISQGIINEHNIDRPFLE 472
Query: 81 LV------------DPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSK 128
+ D R + E+A +++ E ++ +
Sbjct: 473 KLMEFCDNDNSFGKDRARLILEYVADEYAGKRIFDPMEL-----------FKDHAALAYF 521
Query: 129 PSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD 188
P+S + + +V RV +TP+R+YF P + +NRV+R ++ D F+RI F DE L+
Sbjct: 522 PTS--FMIPNHCAWVRRVTITPTRIYFSTPCVEPTNRVIRQWKHAQDYFIRIQFTDEVLE 579
Query: 189 KIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA 248
G + ++ R+ L G+ +G ++FLAF +SQ+RE+ A+MF
Sbjct: 580 ----------GRIKSGEAELPLFLRVYRVLEKGVAMGPWHWKFLAFGNSQIREAGAFMFC 629
Query: 249 SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK 308
+ LT +R WMG F I+ +AKYAARLGQ FS+++ + I IPDV+ K
Sbjct: 630 EQSNLTGDMMRAWMGRFSHIKVIAKYAARLGQCFSTTRLVPGIPAPRIVTIPDVE----K 685
Query: 309 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRD 367
+ F+DG+GK+S A+ VA + D PPSA+Q R GG KGV+ P ++ +R
Sbjct: 686 DGFCFTDGVGKISPLLAKIVAHDWSI-DPPPSAYQFRMGGCKGVLVTWPDVKGMEVHIRK 744
Query: 368 SMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 427
S K+ +E L+V+ S++ LNRQ+I++LS+LG+ D++F + + +A + D
Sbjct: 745 SQEKFVAEFNGLEVVRCSQFSTATLNRQIIAVLSSLGVPDQVFVDMMEQQLSDFNAAMED 804
Query: 428 PLKAQEALE-LMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 486
KA L+ + T I+ E+L G+ EPF+ +LQ +R+ + L+ K R+ +
Sbjct: 805 KQKATAILKTFIDENHMTPIIAEMLAYGFMGSQEPFVRTLLQLWRSWSIKTLKEKARLNV 864
Query: 487 PNGRSMMGCLDETRTLN----------------YGQVFVQIS---GAGYRQLHGESSLFS 527
++GC+DET TL Q+F+QI GYR
Sbjct: 865 EKSAFVLGCVDETGTLKGHMKVIEDWKDVSSEKLPQIFLQIPDDVNGGYR---------- 914
Query: 528 SSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECS 587
++ G VV +NP LHPGD+RV++AV+VPAL H+ D VVFP G R P+ CS
Sbjct: 915 --------VITGTCVVGRNPSLHPGDIRVVEAVDVPALRHLRDVVVFPLTGDRDVPSMCS 966
Query: 588 GSDLDGDIYFVCWDDELIPPQQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLG 646
G DLDGD +FV WD LIP ++ PPM P +L + + ++ +F Y+ ++L
Sbjct: 967 GGDLDGDDFFVIWDPLLIPKERSHPPMISEPIAGKELATEPTVNNLITFFVLYMKYNNLP 1026
Query: 647 IIANAHTVFADREPRKARSEPC 668
+IA+AH AD E +S C
Sbjct: 1027 LIAHAHLATADAEVEGVKSPKC 1048
>gi|324500541|gb|ADY40252.1| RNA-dependent RNA polymerase EGO-1 [Ascaris suum]
gi|333440978|gb|AEF32764.1| RdRP1 [Ascaris suum]
Length = 1644
Score = 338 bits (867), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 260/840 (30%), Positives = 411/840 (48%), Gaps = 135/840 (16%)
Query: 138 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 197
DG V +V +TP+R+ F PE+ + NRVLR+F +D + LR+ F D+D ++ + P
Sbjct: 540 DGYQRVRKVVITPTRMLFVVPELLMGNRVLRNFDKDGNGSLRVQFRDDDSSQLRRNTVGP 599
Query: 198 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAE 257
I + + +TL GI IG R F +L S+SQLR++ + F G A
Sbjct: 600 ----------FLIQSTVFNTLTRGIHIGSRHFVYLGSSNSQLRDNGCYFFDDGKGGHAQW 649
Query: 258 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK----YVF 313
IR +G F + N+ K +R+GQ F+ +K+ +V + + + G+ Y+F
Sbjct: 650 IRTQLGKF-DRGNIPKMMSRMGQCFTQAKQC-AVVLKRHKYNKTWDVIGGRDSRGEPYIF 707
Query: 314 SDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK----------- 362
SDG+G++S EFA K+A L + PS FQIR+ G KGV++ DP +
Sbjct: 708 SDGVGRLSQEFAEKIAKDINLANAVPSCFQIRHRGMKGVLSVDPLLDDRKQWAIAHGIKD 767
Query: 363 ------------LSLRDSMRKYESELTK-LDVLAWSKYQPCFLNRQLISLLST------- 402
+ R S K+++ + ++++ +S LNR +IS+L
Sbjct: 768 GSMATSRINDLAVVFRPSQDKFKAPRDEAIEIVKYSSPTCVSLNRPMISILDQVSSMQGH 827
Query: 403 ---LGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDA 459
+ + + I E + + +L I D + ++ L + N + L L+ G+
Sbjct: 828 TVHMTVTERIHELLDMQLM-ELAEIFLDEDRCRDKLNELPRLMNVDRLS--LVRGFALTQ 884
Query: 460 EPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISGAGYR 517
EPF +L+ L + K +I IP+ GRSM G +DET L GQ+FVQ + +
Sbjct: 885 EPFFRSLLRASVRYTLKKQLAKEQILIPSHLGRSMFGVMDETGQLQSGQIFVQYTNNVW- 943
Query: 518 QLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQK 577
L + + I++G V++ KNPC+ GDVR+L+AV++P LHH+VD VVFPQ
Sbjct: 944 -------LKNPPPRAAKTILKGPVLMTKNPCIVAGDVRLLEAVDIPELHHLVDVVVFPQY 996
Query: 578 GMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVE---- 633
G RPHP+E +GSDLDGD Y V WD +L+ + + P+D+T + M+ +V + V+
Sbjct: 997 GPRPHPDEMAGSDLDGDEYSVIWDKKLMFIRNENPLDFT--KRMRKYEEVGTDKVDLEMR 1054
Query: 634 EYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAE---- 689
++F NYI DS+G IANA V AD SE C +A+K S AVDFPKTG E
Sbjct: 1055 KFFVNYIKQDSIGSIANAFLVNADL--YGITSEICENIAKKHSQAVDFPKTGDAPEPLTR 1112
Query: 690 ----------IPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVK---DIAPHTSCIRL 736
+PP + +PDFM K +P+Y S ++G+L+R ++ D+ TS +
Sbjct: 1113 VWTIGKDGSFVPPE-RSERWPDFMCKNHEPSYISPRLVGQLYRRIRLVDDVLTLTSAL-- 1169
Query: 737 FTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKM 796
EV DP ++ G+E + ++A +Y+ + ++D YGI+ E ++L+G I +
Sbjct: 1170 --DEVTELELDPMLQYPGWEKYAENARLQLDSYNAHIRAILDNYGIQDEGQLLSGCISVI 1227
Query: 797 SKSFTKR--------RDAEAIGMAVRALRKEAR-AWFKEKSG-------------SDTED 834
+ R I V ++ + R A+F+E G SD D
Sbjct: 1228 RNRISDRDVDDMSFFNTNHVIEKKVASIFRMFRHAFFREFGGYERCTEVDREGATSDNGD 1287
Query: 835 D-----------AYAKASAWYHVTYHPDYWGCYNQGM-NRDHFLSFPWCVYDRLVEIKKD 882
D KASA+Y V CY + + LSF W +D L +K++
Sbjct: 1288 DERRVCLNPTYSMRCKASAYYVV--------CYQEAAESTRRLLSFGWLAWDVLSHVKQE 1339
>gi|303322200|ref|XP_003071093.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240110792|gb|EER28948.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 1195
Score = 337 bits (865), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 271/897 (30%), Positives = 423/897 (47%), Gaps = 117/897 (13%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLY--------- 102
+P+ + F+I LV NG ++ P+ FY + R + + AL KL
Sbjct: 318 IPFTLKFQIAKLVWNGEMS-PMKALQFYPFIKRSRDIHGLEVVIEALKKLTTNLEYPSPD 376
Query: 103 -HLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEIN 161
H + L DQ + + + + ++ V VHR QVTPS Y GP I
Sbjct: 377 THESDVDVIALGTLLDQMIERVDFQDSTRLNLVHPNN--VKVHRAQVTPSGTYLYGPNIE 434
Query: 162 VSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNG 221
NRVLR + I+NFLR+ F+DE D ++ P+ S + R L+ G
Sbjct: 435 TKNRVLRQYNDHINNFLRVEFVDETGDPVY---FDPQAS-----LHNIFHERFKGVLKQG 486
Query: 222 ILIGDRKFEFLAFSSSQLRESSAWMFA-----SRYGLTAAEIREWMGNFREIRNVAKYAA 276
I IG F FL FS S LR + W A S A I + +G+F I + AK AA
Sbjct: 487 IKIGGCHFSFLGFSHSSLRSQTCWFVAPFTTSSGERFDAQSIIQGLGSFSHIYSPAKLAA 546
Query: 277 RLGQSFSSSKETLSVHMDEIEII-PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK 335
R+GQ+FS ++ ++++ D + + PDVK + VFSDG+G S K+ S+ L+
Sbjct: 547 RIGQTFSETQTSIAIPEDAVFLNEPDVK----RNGRVFSDGVGTFSPRLLYKIWSEYALR 602
Query: 336 DN-PPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELT-KLDVLAWS-KYQPCF 391
+ P+ FQIR+ G KG+V+ D ++L LR+SM K+ + ++V + P +
Sbjct: 603 EKVKPTVFQIRFAGAKGMVSLDTRLKGEQLRLRESMVKFSARRAFNIEVCGSGIRALPFY 662
Query: 392 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI--LKE 449
LN Q+I +L LG+ F K Q + + +L ++ K + LE S + + L E
Sbjct: 663 LNAQIIKILEDLGVPPTGFIKLQSDEIERLLSVGKSASKTSQFLEESSIAKEVRVPWLIE 722
Query: 450 LLI-CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 508
+L G+ D +PFL ++Q K+ +L+ + RI +P ++ G +DET LN G++F
Sbjct: 723 ILHGLGFHHDQDPFLRSVVQLAIFFKMRDLKYRARIRVPEAVTLYGIMDETGYLNEGEIF 782
Query: 509 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA---L 565
F + + +V+ V+V + P LHPGDV+ KAV+VP L
Sbjct: 783 CT---------------FLNEEGGREILVRDQVIVTRAPALHPGDVQYAKAVDVPENSPL 827
Query: 566 HHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDH 625
+ +CV+F Q G R P+ SG DLDGD+Y V +D+ L+PP PP +Y + LD
Sbjct: 828 RSLHNCVIFSQHGFRDLPSMLSGGDLDGDLYNVIYDERLMPPCTYPPANYPKVEEKLLDR 887
Query: 626 DVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTG 685
+V +D+ ++F ++ D LG IA H AD+ P CL LAE S+AVDF K+G
Sbjct: 888 EVVRDDIIDFFVTFMQQDQLGRIATIHQAIADQRPAGTLDRDCLLLAELHSVAVDFSKSG 947
Query: 686 VPAE---IPPHLYVKEYPDFM------------------------------EKPDKPTYE 712
+P + IP + YPDFM E+P + Y+
Sbjct: 948 IPVDLTRIPKR--PRYYPDFMAPSPRIKIADSIEVVEEEQYLAEDEDDDEDERPQRRYYK 1005
Query: 713 SQNVIGKLFRAVK-----DIAPHTSCIRLFTKEVARRSYD-PDMEVDGFE-DH-IDDAIY 764
S ++G ++R + + + S +R + +D E +GF+ DH ++D
Sbjct: 1006 SNRILGVMYRNINEQEFLNAVRNASKLRRDDNTLLNAIWDYVASETEGFQWDHLVEDGRK 1065
Query: 765 HKGNYDYKLGNLMDYYGIK------TEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRK 818
K Y+ KL +M Y TE E++ GSI+ + S RRD E A +++R+
Sbjct: 1066 VKDIYEDKLREIMQQYSKTPWKSSLTEVEVVMGSILGQN-SKQSRRDKE----ASQSMRE 1120
Query: 819 EARAWFKEKSGSDTE-----DDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPW 870
E + T+ DD+ ++ A + H Y G +Q + LSFPW
Sbjct: 1121 EYQELVNFTISMLTDRDSGGDDSLERSIACFWHALHGKYSGSRSQ--KKVALLSFPW 1175
>gi|324500457|gb|ADY40216.1| RNA-dependent RNA polymerase RRF-3 [Ascaris suum]
gi|333440982|gb|AEF32766.1| RdRP3 [Ascaris suum]
Length = 1640
Score = 337 bits (865), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 250/808 (30%), Positives = 407/808 (50%), Gaps = 106/808 (13%)
Query: 141 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 200
V + +V TP R+ PE+ ++NRV+RHF + LR F D++ ++ D + RG
Sbjct: 563 VLIRKVMATPLRLILMPPEVMMTNRVVRHFGEEYA--LRCVFRDDNGQRLVVNDFT-RGR 619
Query: 201 SATDITRTRIYTRIL-STLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL------ 253
+ + ++ I R++ TL GI I R ++FLA+S+SQ+R+ +M+++ +
Sbjct: 620 AVQE--QSLIIQRLVYKTLSEGIHIASRHYKFLAWSNSQMRDHGCYMYSATKVIDDVSGK 677
Query: 254 ----TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDV-----KI 304
+IR WMG+F +NV K +R+GQ F+ ++ T+ + + + D+
Sbjct: 678 ERIYEIEDIRRWMGDFTASKNVPKLMSRMGQCFTQAQPTIVLERKDWRMEEDIVGGLPHP 737
Query: 305 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT----SS 360
E G+ + FSDG G++SA++A VA+K L+ PPS FQ+R+ G+KGV+ DP+ +
Sbjct: 738 ETGEL-FNFSDGAGRISAKYASLVAAKLDLRP-PPSCFQVRFKGFKGVLCVDPSLDLENK 795
Query: 361 KKLSLRDSMRKYE---SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREA 417
+ + R S +K+E SE +L+V+ S L+R LI +L D++ E++ RE
Sbjct: 796 ENVVFRRSQKKFEEDESEAAELEVVKHSMPSFVCLSRPLIMIL------DQVSERQNREL 849
Query: 418 ------------VRQLDAILTDPLKAQEALELMSPGENTNI-LKELLICGYKPDAEPFLS 464
++L+ + L + A E +S + +I ++L G+ EPF
Sbjct: 850 HQRLCWRIHCLLEKELNTLAEMLLDEEVAAEALSSRLSLSIDFRQLHDSGFTFTNEPFFR 909
Query: 465 MMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGE 522
+L + + +K +IF+P GR+M G +D+T L YGQVFVQ S +
Sbjct: 910 SLLVAVHHYNIKQHLSKLKIFLPGSMGRTMYGVIDDTGVLQYGQVFVQYSPS-------- 961
Query: 523 SSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPH 582
+ S++ G V+V KNPCL GDVR+ AV +L H+ D +VFP+ G RPH
Sbjct: 962 ----VRTPSKKVITHVGPVLVTKNPCLVGGDVRMFTAVYQSSLSHLRDVIVFPRYGPRPH 1017
Query: 583 PNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVN 642
+E +GSDLDGD Y V +D +L + M + + D ED+ ++F Y+
Sbjct: 1018 TDEMAGSDLDGDEYIVIFDKDLFLDHNEEAMHFPKPVASDYDTPPTAEDMIDFFLKYLSQ 1077
Query: 643 DSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKE--YP 700
DS+G ++NAH + +DR E C +A K SIAVDFPK+G PAE P + + P
Sbjct: 1078 DSIGRMSNAHLIMSDR--LGLFHEICDGIARKCSIAVDFPKSGEPAE-PLSSFEQSDIVP 1134
Query: 701 DFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRL--FTKEVARRSYDPDMEVDGFEDH 758
DFM+K +P+Y S ++G+L+R VK + ++ FT + YD + F+ H
Sbjct: 1135 DFMQKSFRPSYRSHRLVGRLYRKVKKVENIVELAQMIPFTDTFDPQLYDESL----FDTH 1190
Query: 759 ---IDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVR- 814
+ ++I+ + Y+ K+ LMD YGI EA +++G + + + +D + + R
Sbjct: 1191 PCLVRNSIHLRNQYNAKVQQLMDEYGITDEASVVSGHSVTIRRITDMEKDDYSYYHSDRI 1250
Query: 815 ----------ALRKEARAWFKEKSGSDTED-----------DAYAKASAWYHVTYHPDYW 853
+ R+E F E+S T D KA WY V Y
Sbjct: 1251 VEMRYSRIYESFRREFFMEFGEESDFITVDAFGQRGIRWNSALITKAKVWYAVCYG---- 1306
Query: 854 GCYNQGMNRDHFLSFPWCVYDRLVEIKK 881
+ M F SFPW V+D L+ +K+
Sbjct: 1307 ---KRAMCPSKFRSFPWIVWDLLLIVKR 1331
>gi|339242799|ref|XP_003377325.1| RNA dependent RNA polymerase family protein [Trichinella spiralis]
gi|316973886|gb|EFV57430.1| RNA dependent RNA polymerase family protein [Trichinella spiralis]
Length = 1417
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 255/783 (32%), Positives = 402/783 (51%), Gaps = 92/783 (11%)
Query: 141 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 200
V V +V +TP+RV P+ +SNR+LR F D+ LR+ F DE +I
Sbjct: 396 VSVRKVVITPTRVLLSVPDKMMSNRILRQFGSDLA--LRVIFRDEGGTRI---------- 443
Query: 201 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIRE 260
A+ + T + + + + G+ IG R ++FL +S+SQLR+ + +AS + EIR
Sbjct: 444 PASKFSLTSLKQIVTTVMMKGLAIGPRLYQFLGWSNSQLRDHGCYFYASTEQVNVEEIRR 503
Query: 261 WMGNFREIRNVAKYAARLGQSFSSSKETLSV--HMDEIEIIPDVKIEIGKTKYVFSDGIG 318
WMG+F IR+V K +R+GQ F+ + ++ + D E++ + I+ +K+ FSDGIG
Sbjct: 504 WMGDFSSIRSVPKLMSRMGQCFTQAFAITAIPFNPDSKEVLIETDIQSSDSKFCFSDGIG 563
Query: 319 KVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP--TSSKKLSLRDSMRKYESE- 375
++S + A +VA + L PSAFQIRY G+KG++ DP K+ R SM K+ +E
Sbjct: 564 RMSTKLAEEVAERLELWP-VPSAFQIRYAGFKGMLCVDPRLDGDVKMVFRQSMHKFHTEG 622
Query: 376 LTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEI--FEKKQREAVRQLDAILTDP--- 428
L+++ S QPC LNR LI +L + + + + Q ++ LD + +
Sbjct: 623 AHTLEIVKHS--QPCEVNLNRPLIMILDQVAFKEGVPVNGRVQNRIMQLLDQQICELSQM 680
Query: 429 -LKAQEALELMSPGENTNI-LKELLICGYKPDAEPFLSMMLQTFRASKLLE--LRTKTRI 484
L +A ++S ++ + ++L G++ EPF ML K+ E R K I
Sbjct: 681 LLFEDQAKSVLSATMHSEMNFEKLADAGFRFTEEPFFRNMLLACYKFKVKEKLFRMKIEI 740
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 544
GR+M G +DE L+ GQVF+Q S R GE + ++ G V+V
Sbjct: 741 DPSLGRTMYGVMDELGLLHPGQVFIQCSANILRP--GED----------KRVITGKVMVT 788
Query: 545 KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDEL 604
K+P + PGDVR+L AV++ H++ D +VFP+ G RP ++ +GSDLDGD Y V WD+EL
Sbjct: 789 KSPSVVPGDVRILTAVDLEIYHYLNDVIVFPKIGYRPVTDQMAGSDLDGDEYAVIWDEEL 848
Query: 605 IPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKAR 664
+ P M Y S ++D D+ + + ++F +YI +DS+G IA AH V +D
Sbjct: 849 MFCNNYPAMLYEKVISSEIDGDITSDKMVDFFLHYICSDSIGRIAIAHLVASDSYGIFDD 908
Query: 665 SEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKE----YPDFMEKPDKPTYESQNVIGKL 720
C +A K S+AVDFPK+GV PP L E YPD++ K Y S+ ++G L
Sbjct: 909 VSNC--IARKHSMAVDFPKSGVT---PPKLENDEIPLKYPDYIPKCYNSLYRSKWLLGSL 963
Query: 721 FRAV---KDIAPHTSCIRLFTKEVARRSYDPDM---EVDGFEDHIDDAIYHKGNYDYKLG 774
+R V IA + ++V DP + E FE+ AI+ + Y +L
Sbjct: 964 YRKVYMLNSIAELS-----LARKVTTGKSDPHLKIAEAKNFEEKA-RAIFQR--YKSELH 1015
Query: 775 NLMDYYGIKTEAEILTGSIMKMSK--------SFTKRRDAEAIGMAVRALRKEARAWF-- 824
+L+D YGI+ E +++TG I KM F+ + + + + L+K+ + F
Sbjct: 1016 SLLDEYGIENEFQLITGKITKMHSRLSDGERDDFSYYNTEKVLKVRLGMLQKKYKKLFVS 1075
Query: 825 -------KEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLV 877
KE+ + TE A ASAWY V Y + ++ LSFPW V++ L+
Sbjct: 1076 QFSSVVSKEQLANYTE--VQAAASAWYSVAYR-------DAEISNRTALSFPWLVWEVLL 1126
Query: 878 EIK 880
++K
Sbjct: 1127 DLK 1129
>gi|392861850|gb|EAS37560.2| hypothetical protein CIMG_02715 [Coccidioides immitis RS]
Length = 1195
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 270/897 (30%), Positives = 424/897 (47%), Gaps = 117/897 (13%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLY--------- 102
+P+ + F+I LV NG ++ P+ FY + R + + AL KL
Sbjct: 318 IPFTLKFQIAKLVWNGEMS-PMKALQFYPFIKRSRDIHGLEVVIEALKKLTTNLEYPSPD 376
Query: 103 -HLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEIN 161
H + L DQ + + + + ++ V VHR QVTPS Y GP I
Sbjct: 377 THESDVDVIALGTLLDQMIERVDFQDSTRLNLVHPNN--VKVHRAQVTPSGTYLYGPNIE 434
Query: 162 VSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNG 221
NRVLR + I+NFLR+ F+DE D ++ P+ S + R L+ G
Sbjct: 435 TKNRVLRQYNDHINNFLRVEFVDETGDPVY---FDPQAS-----LHNIFHERFKGVLKQG 486
Query: 222 ILIGDRKFEFLAFSSSQLRESSAWMFA-----SRYGLTAAEIREWMGNFREIRNVAKYAA 276
I IG F FL FS S LR + W A S A I + +G+F I + AK AA
Sbjct: 487 IKIGGCHFSFLGFSHSSLRSQTCWFVAPFTTSSGERFDAQSIIQGLGSFSHIYSPAKLAA 546
Query: 277 RLGQSFSSSKETLSVHMDEIEII-PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK 335
R+GQ+FS ++ ++++ D + + PD+K + VFSDG+G S K+ S+ L+
Sbjct: 547 RIGQTFSETQTSIAIPEDAVFLNEPDMK----RNGRVFSDGVGTFSPRLLYKIWSEYALR 602
Query: 336 DN-PPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELT-KLDVLAWS-KYQPCF 391
+ P+ FQIR+ G KG+V+ D ++L LR+SM K+ + ++V + P +
Sbjct: 603 EKVKPTVFQIRFAGAKGMVSLDTRLKGEQLRLRESMVKFSARRAFNIEVCGSGIRALPFY 662
Query: 392 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI--LKE 449
LN Q+I +L LG+ F K Q + + +L ++ K + LE S + + L E
Sbjct: 663 LNAQIIKILEDLGVPPTGFIKLQSDEIERLLSVGKSASKTSQFLEESSIAKEVRVPWLIE 722
Query: 450 LLI-CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 508
+L G+ D +PFL ++Q K+ +L+ + RI +P ++ G +DET LN G++F
Sbjct: 723 ILHGLGFHHDQDPFLRSVVQLAIFFKMRDLKYRARIRVPEAVTLYGIMDETGYLNEGEIF 782
Query: 509 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA---L 565
F + + +V+ V+V + P LHPGDV+ KAV+VP L
Sbjct: 783 CT---------------FLNEEGGREILVRDQVIVTRAPALHPGDVQYAKAVDVPENSPL 827
Query: 566 HHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDH 625
+ +CV+F Q G R P+ SG DLDGD+Y V +D+ L+PP PP +Y + LD
Sbjct: 828 RSLHNCVIFSQHGFRDLPSMLSGGDLDGDLYNVIYDERLMPPCTYPPANYPKVEEKLLDR 887
Query: 626 DVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTG 685
+V +D+ ++F ++ D LG IA H AD+ P + CL LAE S+AVDF K+G
Sbjct: 888 EVVRDDIIDFFVTFMQQDQLGRIATIHQAIADQRPAGTLDQDCLLLAELHSVAVDFSKSG 947
Query: 686 VPAE---IPPHLYVKEYPDFM------------------------------EKPDKPTYE 712
+P + IP + YPDFM E+P + Y+
Sbjct: 948 IPVDLTRIPKR--PRYYPDFMAPSPRIKIADSIEVVEEEQYLAEDEDDDEDERPQRRYYK 1005
Query: 713 SQNVIGKLFRAVK-----DIAPHTSCIRLFTKEVARRSYD-PDMEVDGFE-DH-IDDAIY 764
S ++G ++R + + + S +R + +D E +GF+ DH ++D
Sbjct: 1006 SNRILGVMYRNINEQEFLNAVRNASKLRRDDNTLLNAIWDYVASETEGFQWDHLVEDGRK 1065
Query: 765 HKGNYDYKLGNLMDYYGIK------TEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRK 818
K Y+ KL +M Y TE E++ GSI+ + S RRD E A +++R+
Sbjct: 1066 VKDIYEDKLREIMQQYSKTPWKSSLTEVEVVMGSILGQN-SKQSRRDKE----ASQSMRE 1120
Query: 819 EARAWFKEKSGSDTE-----DDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPW 870
E + T+ DD+ ++ A + H Y G +Q + LSFPW
Sbjct: 1121 EYQELVNFTISMLTDRDSGGDDSLERSIASFWHALHAKYSGSRSQ--KKVALLSFPW 1175
>gi|213407476|ref|XP_002174509.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces japonicus
yFS275]
gi|212002556|gb|EEB08216.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces japonicus
yFS275]
Length = 1213
Score = 336 bits (861), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 245/797 (30%), Positives = 391/797 (49%), Gaps = 61/797 (7%)
Query: 126 RSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE 185
+++ S+ GL V +V +TP+ V + NRV+RHF + D FLRI +E
Sbjct: 434 QNQSSASGKKFTSGLNSVKKVCITPTTVKVMDNSLEAGNRVIRHFSQYNDRFLRIQITEE 493
Query: 186 DLD-KIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 244
+ KI S + + S +Y R+ + +GI+IG FEFLAF +SQLRE A
Sbjct: 494 NTKRKIRSNPDALKQES--------VYARVYQLMSHGIIIGKTHFEFLAFGNSQLREHGA 545
Query: 245 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 304
+ FAS +A IR WMG+F +VAKYAAR+GQ FS++K+ + ++ + +
Sbjct: 546 YFFASGEDESADSIRNWMGDFSNNESVAKYAARMGQCFSTTKD-----LKRFQVKVEKRN 600
Query: 305 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS----- 359
+I + F+DG+G S ++ AS+ ++ PSA Q R GGYKGV++ P +
Sbjct: 601 DIIRNDSCFTDGVGMASLSVMKRTASEMDNEEMFPSAVQFRMGGYKGVLSLAPPTLLEYH 660
Query: 360 -SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAV 418
+ RDS K++S T L+V+ S++ LN QLI+LL LG+ +F + +
Sbjct: 661 KGNLVFTRDSQEKFKSNFTVLEVIKVSRFSHAHLNMQLITLLEGLGVPTSLFVDLAKNEL 720
Query: 419 RQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLE 477
++L L DP +A L + +T IL +L+ CG+ + F ++ + +
Sbjct: 721 KELTISLKDPRRAVTLLRNHVDEYRSTLILADLIACGFMQRNDSFTKNLINLYFEWVVRT 780
Query: 478 LRTKTRIFIPNGRSMMGCLDETRTL--NYG-------QVFVQISGAGYRQLHGESSLFSS 528
++ K R+ + G +MG DET TL +Y +VF+QI+ + ++++
Sbjct: 781 IKEKQRLRVKEGAFLMGVADETGTLKGHYNDSVLPIPEVFIQITDPSK---NADATVTGK 837
Query: 529 SRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSG 588
++ I+ GL VV +NP LHPGDVRV +AV L H+ + +VFP G C+G
Sbjct: 838 IKTT---IIMGLCVVVRNPALHPGDVRVCRAVRCNELLHLKNVIVFPTTGDLSVTEMCAG 894
Query: 589 SDLDGDIYFVCWDDELIPPQQD--PPMDYTPAQSMQLDHDV-QIEDVEEYFTNYIVNDSL 645
DLDGD Y V WD +P + P +D + + V IE ++ +F YI +SL
Sbjct: 895 GDLDGDEYTVIWDPNFLPKIVNYPPYIDNAAKRILTFKEGVPPIESIKAFFVRYIKYESL 954
Query: 646 GIIANAHTVFA-DR--EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDF 702
G+I+N+ +A DR P CL+L+ S AVD+PK+GV A +P K YPDF
Sbjct: 955 GLISNSWKAWAHDRVNNPDGIFGSICLKLSALHSTAVDYPKSGVAAIMPQEYRPKAYPDF 1014
Query: 703 MEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGF-EDHIDD 761
MEK + ++ + +G+++R A + + YD M++ + + +I+
Sbjct: 1015 MEKEFR-SFPAMTAVGEIYRYAS--AFQSQYFKKAYSSKLNNDYDETMKLPPYKQQYIEI 1071
Query: 762 AIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD---AEAIGMAVRALRK 818
A K YD L ++M ++ IKTE EI T ++ T + E I AL+K
Sbjct: 1072 AKKSKEQYDNDLRSVMTHFDIKTEYEIFTSFLLLNKDKETIINEYALREEIAFQFSALKK 1131
Query: 819 E-----------ARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLS 867
A + K+ S + E + +A Y V H + +G + S
Sbjct: 1132 HHTENYFALCGLAPSSVKDMSKQEYEQRIDSAVAAAYDVM-HEEKIAAIAEGTDDLVLTS 1190
Query: 868 FPWCVYDRLVEIKKDKT 884
FP+ + L I + T
Sbjct: 1191 FPYIFHKVLCRIARRHT 1207
>gi|312081788|ref|XP_003143174.1| hypothetical protein LOAG_07593 [Loa loa]
Length = 1450
Score = 336 bits (861), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 257/834 (30%), Positives = 405/834 (48%), Gaps = 127/834 (15%)
Query: 138 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 197
+G V +V +TP+RV PE+ + NRVLR F +D + LRI F D+D
Sbjct: 365 EGYQRVRKVVITPTRVLLVVPELLMGNRVLRTFDKDGNGALRIQFRDDD----------- 413
Query: 198 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAE 257
G+ +T F +L S+SQ+R++ + + G A +
Sbjct: 414 -GTPST-------------------------FVYLGSSNSQMRDNGCYFYDDGKGGQAHK 447
Query: 258 IREWMGNFREIRNVAKYAARLGQSFSSSKE-TLSVHMDEIEIIPDV--KIEIGKTKYVFS 314
IRE +G F N+ K +R+GQ F+ +K T+++ + DV + + Y+FS
Sbjct: 448 IREQLGKFDRC-NIPKMMSRMGQCFTQAKRCTVTLKRHKYNKTYDVIGGRDTNQAFYIFS 506
Query: 315 DGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT--------SSKKLSLR 366
DG GKVS EFA K+A GL + PS +QIR+ G KGV++ DP+ ++ +
Sbjct: 507 DGAGKVSKEFAEKIALDIGLGTSVPSCYQIRHRGIKGVLSVDPSLDQRKHWAAANNVVDN 566
Query: 367 DSMRKYESELTKL----------------DVLAWSKYQPCFLNRQLISLLSTL-GIWDEI 409
+ M +++L L +++ +S LNR +IS+L + G+
Sbjct: 567 NKMTNKQNDLAVLFRPSQDKFKAPRDEYIEIVKYSTPTSVCLNRPMISILDQVSGMQGFS 626
Query: 410 FEKKQREAVRQLDAI----LTDPLKAQEAL--ELMSPGENTNILKELLICGYKPDAEPFL 463
++ R+ + L I L D L ++E +L N+ + L G+ EPF
Sbjct: 627 VHERIRKRIHDLLDIQMTQLADMLMSEEKCREKLNELPWRVNVSRLTLARGFALTQEPFF 686
Query: 464 SMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG 521
+L+ L +L K +I +P GRSM G +DET L +GQVFVQ + + +
Sbjct: 687 RSLLRANIKCTLKKLIAKVQIQVPPHFGRSMFGVMDETGQLQWGQVFVQCTRSIW----- 741
Query: 522 ESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRP 581
L + S+S + I+ G V++ KNPC+ GDVRV +AV++P LHH+VD VVFPQ G RP
Sbjct: 742 ---LKTPSKSAAKIILVGKVMLTKNPCIVAGDVRVFEAVDIPELHHLVDVVVFPQHGPRP 798
Query: 582 HPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQS-MQLDHDVQIE-DVEEYFTNY 639
HP+E +GSDLDGD Y V WD EL+ +PP+D+T + S ++ + Q++ ++ ++F NY
Sbjct: 799 HPDEMAGSDLDGDEYSVIWDPELMFEHNEPPLDFTKSASDNKIVEEEQVDLEMRKFFVNY 858
Query: 640 IVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVP------------ 687
I DS+G I+NA V AD SE C+ +A K S AVDFPKTG
Sbjct: 859 IKQDSIGTISNAFLVNADL--YGITSEVCINIARKHSKAVDFPKTGNAPSPLTRQWTQGK 916
Query: 688 -AEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSY 746
I P + +PDFM K +P+Y S ++G+L+R ++ + + V
Sbjct: 917 NGNILPPERAERWPDFMCKNHEPSYISSRLVGQLYRRIRLLDDALNLTAAMEGSVT-IML 975
Query: 747 DPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKR--- 803
DPD+E G+E + + A +Y + ++M+ YGI+ E ++ +G I + + R
Sbjct: 976 DPDLEYPGWEQYQNVAKIQLDSYHSHIRSIMENYGIEDEGQLFSGFISVIRNRISDRDTD 1035
Query: 804 -----RDAEAIGMAVRALRKEARAWFKEKSGSDTE------DDAYAKASAWYHVTYHPD- 851
I V A+ + R F ++ G E DD + + + HP
Sbjct: 1036 DMSFYNTNHIIEKKVSAVFRAYRHRFFDEFGGFLESTLPDYDDNQSGNAQERRICIHPSL 1095
Query: 852 ---------YWGCY-NQGMNRDH-FLSFPWCVYDRLVEIKKDKTSIGNAFPALE 894
Y CY N M+ + LSF W V+D L +K++ +G A P ++
Sbjct: 1096 DMKRKASAYYILCYRNASMDTSYRILSFGWLVWDILCHVKQE-VRLGRAKPIMQ 1148
>gi|320034943|gb|EFW16885.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira]
Length = 1195
Score = 336 bits (861), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 270/897 (30%), Positives = 423/897 (47%), Gaps = 117/897 (13%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLY--------- 102
+P+ + F+I LV NG ++ P+ FY + R + + AL KL
Sbjct: 318 IPFTLKFQIAKLVWNGEMS-PMKALQFYPFIKRSRDIHGLEVVIEALKKLTTNLEYPSPD 376
Query: 103 -HLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEIN 161
H + L DQ + + + + ++ V VHR QVTPS Y GP I
Sbjct: 377 THESDVDVIALGTLLDQMIERVDFQDSTRLNLVHPNN--VKVHRAQVTPSGTYLYGPNIE 434
Query: 162 VSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNG 221
NRVLR + I+NFLR+ F+DE D ++ P+ S + R L+ G
Sbjct: 435 TKNRVLRQYNDHINNFLRVEFVDETGDPVY---FDPQAS-----LHNIFHERFKGVLKQG 486
Query: 222 ILIGDRKFEFLAFSSSQLRESSAWMFA-----SRYGLTAAEIREWMGNFREIRNVAKYAA 276
I IG F FL FS S LR + W A S A I + +G+F I + AK AA
Sbjct: 487 IKIGGCHFSFLGFSHSSLRSQTCWFVAPFTTSSGERFDAQSIIQGLGSFSHIYSPAKLAA 546
Query: 277 RLGQSFSSSKETLSVHMDEIEII-PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK 335
R+GQ+FS ++ ++++ D + + PD+K + VFSDG+G S K+ S+ L+
Sbjct: 547 RIGQTFSETQTSIAIPEDAVFLNEPDMK----RNGRVFSDGVGTFSPRLLYKIWSEYALR 602
Query: 336 DN-PPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELT-KLDVLAWS-KYQPCF 391
+ P+ FQIR+ G KG+V+ D ++L LR+SM K+ + ++V + P +
Sbjct: 603 EKVKPTVFQIRFAGAKGMVSLDTRLKGEQLRLRESMVKFSARRAFNIEVCGSGIRALPFY 662
Query: 392 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI--LKE 449
LN Q+I +L LG+ F K Q + + +L ++ K + LE S + + L E
Sbjct: 663 LNAQIIKILEDLGVPPTGFIKLQSDEIERLLSVGKSASKTSQFLEESSIAKEVRVPWLIE 722
Query: 450 LLI-CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 508
+L G+ D +PFL ++Q K+ +L+ + RI +P ++ G +DET LN G++F
Sbjct: 723 ILHGLGFHHDQDPFLRSVVQLAIFFKMRDLKYRARIRVPEAVTLYGIMDETGYLNEGEIF 782
Query: 509 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA---L 565
F + + +V+ V+V + P LHPGDV+ KAV+VP L
Sbjct: 783 CT---------------FLNEEGGREILVRDQVIVTRAPALHPGDVQYAKAVDVPENSPL 827
Query: 566 HHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDH 625
+ +CV+F Q G R P+ SG DLDGD+Y V +D+ L+PP PP +Y + LD
Sbjct: 828 RSLHNCVIFSQHGFRDLPSMLSGGDLDGDLYNVIYDERLMPPCTYPPANYPKVEEKLLDR 887
Query: 626 DVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTG 685
+V +D+ ++F ++ D LG IA H AD+ P CL LAE S+AVDF K+G
Sbjct: 888 EVLRDDIIDFFVTFMQQDQLGRIATIHQAIADQRPAGTLDRDCLLLAELHSVAVDFSKSG 947
Query: 686 VPAE---IPPHLYVKEYPDFM------------------------------EKPDKPTYE 712
+P + IP + YPDFM E+P + Y+
Sbjct: 948 IPVDLTRIPKR--PRYYPDFMAPSPRIKIADSIEVVEEEQYLAEDEDDDEDERPQRRYYK 1005
Query: 713 SQNVIGKLFRAVK-----DIAPHTSCIRLFTKEVARRSYD-PDMEVDGFE-DH-IDDAIY 764
S ++G ++R + + + S +R + +D E +GF+ DH ++D
Sbjct: 1006 SNRILGVMYRNINEQEFLNAVRNASKLRRDDNTLLNAIWDYVASETEGFQWDHLVEDGRK 1065
Query: 765 HKGNYDYKLGNLMDYYGIK------TEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRK 818
K Y+ KL +M Y TE E++ GSI+ + S RRD E A +++R+
Sbjct: 1066 VKDIYEDKLREIMQQYSKTPWKSSLTEVEVVMGSILGQN-SKQSRRDKE----ASQSMRE 1120
Query: 819 EARAWFKEKSGSDTE-----DDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPW 870
E + T+ DD+ ++ A + H Y G +Q + LSFPW
Sbjct: 1121 EYQELVNFTISMLTDRDSGGDDSLERSIASFWHALHGKYSGSRSQ--KKVALLSFPW 1175
>gi|367021614|ref|XP_003660092.1| hypothetical protein MYCTH_2297939 [Myceliophthora thermophila ATCC
42464]
gi|347007359|gb|AEO54847.1| hypothetical protein MYCTH_2297939 [Myceliophthora thermophila ATCC
42464]
Length = 1033
Score = 335 bits (860), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 221/644 (34%), Positives = 335/644 (52%), Gaps = 29/644 (4%)
Query: 35 SRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCI 94
S S DL I+ P IALP+++ +++ + V G ++ + + + + P +
Sbjct: 409 SWSNDLA-ILSPSTHIALPFDVRYQLEVCVSRGILSEYNIGREWLEKLSSFSGPANWG-- 465
Query: 95 EHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPA-ISLDDGLVYVHRVQVTPSRV 153
A ++ + E + R + D + + PA + + D + R VTP+R+
Sbjct: 466 --AANRARLILEYAADQGRPIHDPLELFKDHGAMTYYPATLHIPDYCALIRRAIVTPTRM 523
Query: 154 YFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD-KIHSTDLSPRGSSATDITRT-RIY 211
YF P + SNRV+R ++ D+FLR+ F DE LD +I A ++ R +Y
Sbjct: 524 YFSTPTVETSNRVVRRYQHIQDHFLRVQFTDELLDGRIR----------ACEVDRDDELY 573
Query: 212 TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY--GLTAAEIREWMGNFREIR 269
R+ + GI +G ++FLAF +SQ+RES+A+ F +T IR+WMGNF I
Sbjct: 574 ARVCRVMTQGIRMGKWHWKFLAFGNSQIRESAAFFFCEPEDGSVTCDSIRQWMGNFDHIT 633
Query: 270 NVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVA 329
+VAK AARLGQ FS+++ + I IPDV+ E G + F+DGIGK+S A VA
Sbjct: 634 SVAKLAARLGQCFSTTRLLHCISSPRIARIPDVESENG---FCFTDGIGKISLPLACLVA 690
Query: 330 SKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELTKLDVLAWSKYQ 388
L D PPSA Q R GG KGV+ P ++ +R S K+ +E L+++ S++
Sbjct: 691 EDWKL-DRPPSAVQFRMGGCKGVLVQWPNVKGTEIHIRPSQEKFCAEYNGLEIIRCSQFS 749
Query: 389 PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNIL 447
LNRQ I +LS LG+ DE+F + DA +TD A E L+ + T +
Sbjct: 750 CATLNRQTILILSCLGVSDEVFIDMMASQIANFDAAMTDKDTAVELLDNYVDENLTTTTI 809
Query: 448 KELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL-NYGQ 506
+L G+ EPF+ +LQ +R+ + L+ K R+ + G ++GC+DET TL Y +
Sbjct: 810 ASMLRNGFMHTREPFVRTVLQLWRSWSIKALKEKARLVVEQGAFVLGCVDETGTLRGYSR 869
Query: 507 VFVQISGAGYRQLHGESSLFSSSRSRQRF-IVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 565
S QL R + +V GL +V +NP LHPGD+RV++AV+VP L
Sbjct: 870 ATEGQSNVSRDQLPQIFFQVPDRDHRHAYKVVTGLCIVGRNPSLHPGDIRVVEAVDVPQL 929
Query: 566 HHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD-PPMDYTPAQSMQLD 624
H+ D VVFP +G R P+ CSG DLDGD +FV WD L+P + PPM+Y+ Q
Sbjct: 930 RHLRDVVVFPLRGDRDVPSMCSGGDLDGDDFFVIWDPRLLPAEWGHPPMNYSAPQPPIES 989
Query: 625 HDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPC 668
+ + +F ++ ND L +IA+AH AD E A+ C
Sbjct: 990 RASLAKSLAFFFVLFMKNDRLPLIAHAHLARADYELEGAKHWKC 1033
>gi|290974592|ref|XP_002670029.1| RNA-directed RNA polymerase [Naegleria gruberi]
gi|284083583|gb|EFC37285.1| RNA-directed RNA polymerase [Naegleria gruberi]
Length = 663
Score = 335 bits (859), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 215/640 (33%), Positives = 334/640 (52%), Gaps = 51/640 (7%)
Query: 262 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 321
MG+F +I+ AK AAR GQ +S+ ++ + D IE + D++ + + F+DGIGK+S
Sbjct: 1 MGDFTDIKTPAKVAARFGQCLTSTTPSIEITKD-IEPVEDIE----RNGFTFTDGIGKIS 55
Query: 322 AEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLD 380
E ++V K L ++ SA Q R GG KGV+A DPT +++ R S K+ S +L+
Sbjct: 56 EEMMQRVKEKLQLGESLLSAIQFRCGGGKGVLAIDPTLKGEQIVFRKSQFKFTSIQKQLE 115
Query: 381 VLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSP 440
++ +SK + FLNRQ I++L+ LGI DEIF KQRE +R + +I D KA E L +
Sbjct: 116 IVDYSKRRSGFLNRQFITILTALGIKDEIFMTKQREMIRSILSITDDVSKAYEWLSIYHS 175
Query: 441 GENTNILKELLICGYKPD---AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLD 497
+ +L Y P+ +E F+ ML +++ L LR KT+I+I +MG +D
Sbjct: 176 NHTRTFICHVL--KYVPEIATSENFIMNMLSSYKEQLLKGLRDKTKIYIEKSAYLMGAID 233
Query: 498 ETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 557
E L ++FV +S H ++ F +V+G +V KNP LH GD+R++
Sbjct: 234 EYGVLEENEIFVNLSPI----FHRPNAEFG--------VVKGRCIVGKNPSLHKGDLRIV 281
Query: 558 KAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTP 617
AV+ P L+H+ D VVF +KG RP N +GSDLDGD +FV WD +LIP PMDY+
Sbjct: 282 TAVDRPELYHLNDVVVFSKKGKRPITNMITGSDLDGDQFFVYWDPDLIPESDSEPMDYSV 341
Query: 618 AQSMQ---------LDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPC 668
+ ++ ++ +D+ ++F +I ++LG+IAN H +D S+ C
Sbjct: 342 GAVAKPTNKKDEEEEEYKIKQDDIIDFFIEFITRNNLGLIANTHLANSDFRKNGLTSKEC 401
Query: 669 LQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIA 728
L L E S AVD K+G A IP + + EYP FM K Y+S+ V+GKLF +
Sbjct: 402 LTLCELHSTAVDSAKSGKFAIIPSKVKLYEYPHFMISSMKRKYKSKKVLGKLFDETQ--- 458
Query: 729 PHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEI 788
+ T + ++ + VDGF+ ++ + H NY + + M YG++ E++I
Sbjct: 459 -----FKHETPGKCNKKHNSLLIVDGFDKYLKEIEPHYYNYSRFVNSDMVKYGVEDESQI 513
Query: 789 LTGSIMKMSKSFTKRRD--AEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHV 846
++G I K F + E I + + K R F+E E + A ASAWY++
Sbjct: 514 ISGWINTNIKCFGHKEHDIHETIAITISFYLKHFRNVFEEMVRKYGESERLAIASAWYYI 573
Query: 847 TYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTSI 886
T+ N+ + SF W + LV I + I
Sbjct: 574 THTEK---------NQFNIFSFGWINFKELVMIATKEKEI 604
>gi|301106324|ref|XP_002902245.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
gi|262098865|gb|EEY56917.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
Length = 2680
Score = 335 bits (858), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 262/827 (31%), Positives = 401/827 (48%), Gaps = 99/827 (11%)
Query: 115 LTDQYRKYM-----TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 169
+TDQ+ ++ T +SP+++ + V++V VTPSR+ +C P+ SNRV RH
Sbjct: 1071 ITDQFSSFLKEERSTLEGLCTSPSLNPES---IVYKVIVTPSRIVYCPPDPAPSNRVFRH 1127
Query: 170 FRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILI----G 225
+ + NF+ + F D++++++ D I RI + L+NGI I G
Sbjct: 1128 WGSE--NFMYVYFRDDNMERL-------------DFRSVTILERIRNVLKNGIEIPHVSG 1172
Query: 226 DRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSS 285
KF FL S SQ+R SSA +F L +R W+G+ + + AKY RLGQ+FSS+
Sbjct: 1173 GLKFRFLGCSLSQVRNSSA-IFTR---LDHHAVRLWIGDLSLLTSPAKYLKRLGQAFSST 1228
Query: 286 KETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIR 345
K+T V ++ D +I +YVF+DG G++ A + + L PSAFQ+R
Sbjct: 1229 KDTFEVSRSVLDNPVD---DIENDQYVFTDGCGEIGLVGAESIVRELQLS-YTPSAFQVR 1284
Query: 346 YGGYKGVVAA------DPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISL 399
GG KGV+ D + + + LR SM K+ S T L+++A + +L RQ + +
Sbjct: 1285 LGGAKGVLVVSDLGNPDISREEAVVLRKSMSKFSSNHTMLEIVACAGKSEAYLTRQSVLI 1344
Query: 400 LSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGE---NTNILKELLICGYK 456
L+ LGI +++F + Q E + L +++ A L+ + P ++L L K
Sbjct: 1345 LNDLGINEDVFMEMQEEFLSDLRSLIASDSGAYFGLKAVLPPSVIWRIDVLVRKL--EVK 1402
Query: 457 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGY 516
+ +LS + +T +L + RI I GR++MG D T TL YG+VFVQ S
Sbjct: 1403 ILVDEYLSSLARTIYHYRLANTVMRARIPIAKGRTLMGVADFTGTLEYGEVFVQYSDTD- 1461
Query: 517 RQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKA-VNVP-ALHHMVDCVV 573
+ + ++ G+ V V ++PC HPGD+RVL+ +VP L + DC+V
Sbjct: 1462 ----------EETGNDSYVLLDGIDVAVHRSPCHHPGDIRVLRCRTDVPPQLRQLKDCIV 1511
Query: 574 FPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP--QQDPPMDY-------TPAQSMQLD 624
FP KG RPHP+EC+G DLDGD++ V WD+ LIP Q PM + T + +
Sbjct: 1512 FPSKGPRPHPDECTGGDLDGDMFVVIWDERLIPSRTQVHEPMAFDEDNGGDTSPRGEEYH 1571
Query: 625 HDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKT 684
+ +++ + I +D LGI +NAH D + + LA S VD +
Sbjct: 1572 QSTDDAGLIDFYIHSIQDDILGIASNAHLALCDSSNDGSLDDNAKILARICSKQVDSLRA 1631
Query: 685 GVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARR 744
EI +L K YPDFM+ +KP+Y S+ ++GK++R K I T TK V+R
Sbjct: 1632 EKDLEIVRNLAPKSYPDFMQNKEKPSYPSKKILGKMYRRCKAIFDTT-----MTKSVSRM 1686
Query: 745 SY-DPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKR 803
D V G+ D+++ A Y +L L+ G +TEAE+ TG I++ +
Sbjct: 1687 PIRDDHFLVAGYTDYVEQANLLYRQYKLRLRALLLMSGAQTEAELATGMIVEPQSEYKAD 1746
Query: 804 --RDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMN 861
R E A AL+ R+ F + + + ASA Y VT H D +
Sbjct: 1747 YFRFGEQCKDAFYALQAGFRSQFDSDTSTFAAGENLKLASACYFVT-HDD-----SDATT 1800
Query: 862 RDHFLSFPWCVYDRLVEIKKDK--------------TSIGNAFPALE 894
R LSFPW V D L IK +SIG P L+
Sbjct: 1801 R--CLSFPWIVIDLLTTIKTSNASKTHYKEWKPVRSSSIGQTIPKLQ 1845
>gi|393908637|gb|EJD75145.1| CBR-RRF-1 protein [Loa loa]
Length = 1689
Score = 333 bits (855), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 262/852 (30%), Positives = 405/852 (47%), Gaps = 146/852 (17%)
Query: 135 SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTD 194
S ++G V + +TP+R+ PE+ + NRVLR F D LRI F D+D
Sbjct: 578 SANEGFQRVRKAVITPTRMLLVVPELLMGNRVLREFDEHGDRALRIQFRDDD-------- 629
Query: 195 LSPRGSSATDITRTRIYTRILST-----LRNGILIGDRKFEFLAFSSSQLRESSAWMFAS 249
T + R ++ + I+ T L +GI I + F +LA S+SQ+R++ + F
Sbjct: 630 -------GTHLRRNKVGSYIIETTVHNCLLHGIYISNSHFVYLASSNSQMRDNGCYFFND 682
Query: 250 RYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKT 309
+IRE +G F N+ K +R+GQ F+ SKE+ V + + + GK
Sbjct: 683 GDDGRVGKIREKLGKFDRT-NIPKLMSRMGQCFTQSKES-DVVLKRKKYNKTYDVIGGKD 740
Query: 310 K----YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL-- 363
++FSDG+GK+S +FA ++A GL PS FQ R G KGV++ DP ++
Sbjct: 741 SCGEPFIFSDGVGKLSEDFAERIAKDLGLNKCVPSCFQFRLRGLKGVLSVDPALRQRRLW 800
Query: 364 ----SLRDSMRKYESELTKLDVL-------------------AWSKYQPCFLNRQLISLL 400
+ D RK E ++ LDVL +S P LNR I++L
Sbjct: 801 AECNDVEDKNRKTE-KVNDLDVLFRPSQDKFHAPRKEMIEIVKYSSPTPVCLNRPFINIL 859
Query: 401 STLG----------IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKEL 450
+ I I R+ ++ DA++++ K +E L N L
Sbjct: 860 DQVSDMQGFDVHRRIVHRIHGLLDRQLLQLSDALMSEN-KCRERLAEFPRRINVQYLS-- 916
Query: 451 LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVF 508
L G+ EPF +L L + K +I IP GR+M G LDET L YGQVF
Sbjct: 917 LARGFTLTQEPFFRGLLIASVRFTLQKQLFKEQIQIPANLGRTMFGILDETGLLQYGQVF 976
Query: 509 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 568
VQ + SL + S++ + IV+G V++ KNP + GDVRV +A+++P L H+
Sbjct: 977 VQFTN--------NVSLKTPSKAAAKTIVKGPVLITKNPSIVAGDVRVFEAIDLPELRHL 1028
Query: 569 VDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQ--LDHD 626
VD VVFPQ G RPH +E +GSDLDGD Y V WDD+++ + PMD++ L+ D
Sbjct: 1029 VDVVVFPQHGPRPHTDEMAGSDLDGDEYSVIWDDQMLFDHNEEPMDFSKLVRPPDLLEED 1088
Query: 627 VQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGV 686
+ ++ ++ YI+ DS+G+IANA A+ + S+ C +AEK S +VDFPKTG
Sbjct: 1089 EVVREMRRFYVKYIMQDSVGVIANA--FLANSDMFGIASDICTSIAEKHSQSVDFPKTGW 1146
Query: 687 P-------------AEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSC 733
P +I P + +PDFM K +P+Y S ++G+LFR ++ +
Sbjct: 1147 PPRPLVKEWSKGPDGKIMPPERPERWPDFMCKTHEPSYVSTRLVGQLFRRIR-LVHDVLT 1205
Query: 734 IRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSI 793
I ++ ++ DP +E G+E + ++A + Y + LMD YGI+ E ++ +G
Sbjct: 1206 ITAVSEGHSQIVVDPLLEYHGWESYENNANLNLIAYSAHIKALMDNYGIEDEYQLFSGCF 1265
Query: 794 MKMSKSFTKR---------------RDAEAIGMAVRALRKEARAWFKE----KSGSDTED 834
K+ + R + I M+ R+ ++F E S ++ +D
Sbjct: 1266 SKIRNRISDRDTDDMSQFNTNFFIEQKLTNIFMSFRS------SFFAEFGDFMSCTEPDD 1319
Query: 835 DAYA------------------KASAWYHVTYHPDYWGCYNQGMN--RDHFLSFPWCVYD 874
D ++ KASA+Y V CY + +N + LSFPW +D
Sbjct: 1320 DFHSKDMTERRYCKCPTMEMKKKASAYYIV--------CYRKAVNGIGERLLSFPWIAWD 1371
Query: 875 RLVEIKKDKTSI 886
L EIKK+ I
Sbjct: 1372 ILAEIKKENCVI 1383
>gi|312082346|ref|XP_003143407.1| RNA dependent RNA polymerase [Loa loa]
Length = 1312
Score = 333 bits (854), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 260/846 (30%), Positives = 402/846 (47%), Gaps = 134/846 (15%)
Query: 135 SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTD 194
S ++G V + +TP+R+ PE+ + NRVLR F D LRI F D+D
Sbjct: 214 SANEGFQRVRKAVITPTRMLLVVPELLMGNRVLREFDEHGDRALRIQFRDDD-------- 265
Query: 195 LSPRGSSATDITRTRIYTRILST-----LRNGILIGDRKFEFLAFSSSQLRESSAWMFAS 249
T + R ++ + I+ T L +GI I + F +LA S+SQ+R++ + F
Sbjct: 266 -------GTHLRRNKVGSYIIETTVHNCLLHGIYISNSHFVYLASSNSQMRDNGCYFFND 318
Query: 250 RYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKT 309
+IRE +G F N+ K +R+GQ F+ SKE+ V + + + GK
Sbjct: 319 GDDGRVGKIREKLGKFDRT-NIPKLMSRMGQCFTQSKES-DVVLKRKKYNKTYDVIGGKD 376
Query: 310 K----YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL-- 363
++FSDG+GK+S +FA ++A GL PS FQ R G KGV++ DP ++
Sbjct: 377 SCGEPFIFSDGVGKLSEDFAERIAKDLGLNKCVPSCFQFRLRGLKGVLSVDPALRQRRLW 436
Query: 364 ----SLRDSMRKYESELTKLDVL-------------------AWSKYQPCFLNRQLISLL 400
+ D RK E ++ LDVL +S P LNR I++L
Sbjct: 437 AECNDVEDKNRKTE-KVNDLDVLFRPSQDKFHAPRKEMIEIVKYSSPTPVCLNRPFINIL 495
Query: 401 STLG----------IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKEL 450
+ I I R+ ++ DA++++ K +E L N L
Sbjct: 496 DQVSDMQGFDVHRRIVHRIHGLLDRQLLQLSDALMSEN-KCRERLAEFPRRINVQYLS-- 552
Query: 451 LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVF 508
L G+ EPF +L L + K +I IP GR+M G LDET L YGQVF
Sbjct: 553 LARGFTLTQEPFFRGLLIASVRFTLQKQLFKEQIQIPANLGRTMFGILDETGLLQYGQVF 612
Query: 509 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 568
VQ + SL + S++ + IV+G V++ KNP + GDVRV +A+++P L H+
Sbjct: 613 VQFTN--------NVSLKTPSKAAAKTIVKGPVLITKNPSIVAGDVRVFEAIDLPELRHL 664
Query: 569 VDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQ--LDHD 626
VD VVFPQ G RPH +E +GSDLDGD Y V WDD+++ + PMD++ L+ D
Sbjct: 665 VDVVVFPQHGPRPHTDEMAGSDLDGDEYSVIWDDQMLFDHNEEPMDFSKLVRPPDLLEED 724
Query: 627 VQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGV 686
+ ++ ++ YI+ DS+G+IANA A+ + S+ C +AEK S +VDFPKTG
Sbjct: 725 EVVREMRRFYVKYIMQDSVGVIANA--FLANSDMFGIASDICTSIAEKHSQSVDFPKTGW 782
Query: 687 P-------------AEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSC 733
P +I P + +PDFM K +P+Y S ++G+LFR ++ +
Sbjct: 783 PPRPLVKEWSKGPDGKIMPPERPERWPDFMCKTHEPSYVSTRLVGQLFRRIR-LVHDVLT 841
Query: 734 IRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSI 793
I ++ ++ DP +E G+E + ++A + Y + LMD YGI+ E ++ +G
Sbjct: 842 ITAVSEGHSQIVVDPLLEYHGWESYENNANLNLIAYSAHIKALMDNYGIEDEYQLFSGCF 901
Query: 794 MKMSKSFTKRRD------------AEAIGMAVRALRKEARAWFKE-KSGSDTEDDAYA-- 838
K+ + R + + + R A F + S ++ +DD ++
Sbjct: 902 SKIRNRISDRDTDDMSQFNTNFFIEQKLTNIFMSFRSSFFAEFGDFMSCTEPDDDFHSKD 961
Query: 839 ----------------KASAWYHVTYHPDYWGCYNQGMN--RDHFLSFPWCVYDRLVEIK 880
KASA+Y V CY + +N + LSFPW +D L EIK
Sbjct: 962 MTERRYCKCPTMEMKKKASAYYIV--------CYRKAVNGIGERLLSFPWIAWDILAEIK 1013
Query: 881 KDKTSI 886
K+ I
Sbjct: 1014 KENCVI 1019
>gi|392890785|ref|NP_495713.2| Protein RRF-3 [Caenorhabditis elegans]
gi|316979926|emb|CAA88315.2| Protein RRF-3 [Caenorhabditis elegans]
Length = 1765
Score = 333 bits (854), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 248/825 (30%), Positives = 403/825 (48%), Gaps = 92/825 (11%)
Query: 118 QYRKYMTSRS-KPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN 176
QY + + S + A L V V +V VTPSR+ PE+ + NRV+R F D
Sbjct: 653 QYERLLKGESLQDVGLAKPLPKNCVSVAKVIVTPSRILLMAPEVMMVNRVVRRFGPDYA- 711
Query: 177 FLRISFIDEDLDKIHSTDLSPRG-SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFS 235
LR F D++L ++ D S ++I IY TL+NGI + DR + FL +S
Sbjct: 712 -LRCVFRDDNLGRLAIRDFSINNIDHMSNIVTEGIYL----TLKNGIQVADRVYSFLGWS 766
Query: 236 SSQLRESSAWMFASRYGL-------TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 288
+SQ+R+ +++A R T +IR WMG+FR+ +V K +R+GQ F+ ++ T
Sbjct: 767 NSQMRDQGCYLYAPRVNALTGEVTGTVEDIRVWMGDFRDAISVPKMMSRMGQCFTQAQPT 826
Query: 289 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGG 348
+ + + PD++ + + KY FSDG G++S + A ++ LK+ P+ FQ+R+ G
Sbjct: 827 VRLERHHWIVEPDIEGGV-ENKYCFSDGCGRISIKLATHISKILQLKE-VPACFQVRFKG 884
Query: 349 YKGVVAADPT-----SSKKLSLRDSMRKY-----ESELTKLDVLAWSKYQPCFLNRQLIS 398
+KG++ DPT + K+ R S +K+ E + L+V+ ++ P LNR I+
Sbjct: 885 FKGILVIDPTIDDIINMPKVIFRKSQQKFGEGGGELQDEYLEVVKYAMPSPVCLNRPFIT 944
Query: 399 LLSTLG----------IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILK 448
+L + I + + +RE + ++ + A+E + + + N
Sbjct: 945 ILDQVSEKQSASSHRRITNRVHYYLERELCSLSNMLINENQAAEELVNRTNLAIDWNAAS 1004
Query: 449 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQ 506
+ G++ +P + ML + ++ +K +IF+P GRSM G +DET L YGQ
Sbjct: 1005 KR--AGFELSVDPLIRDMLFSIYRYNIIHHISKAKIFLPPSLGRSMYGVVDETGLLQYGQ 1062
Query: 507 VFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH 566
VF+Q S + RQ S + + G V++ KNPC PGDVRV AV PAL
Sbjct: 1063 VFIQYSPS-IRQT-----------SNRPILKTGKVLITKNPCHVPGDVRVFDAVWQPALA 1110
Query: 567 HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHD 626
H+VD VVFPQ G RPHP+E +GSDLDGD Y + WD E++ + M + + + + D +
Sbjct: 1111 HLVDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQEMLLDYNEEAMVFPSSSAAEEDKE 1170
Query: 627 VQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGV 686
+D+ E+F Y+ DS+G +++AH +AD E C +A K ++AVDFPK+GV
Sbjct: 1171 PTTDDMVEFFLRYLQQDSIGRMSHAHLAYADLH--GLFHENCHAIALKCAVAVDFPKSGV 1228
Query: 687 PAE-IPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTK--EVAR 743
PAE + + PD+M KP Y S + G+L R + + + F V
Sbjct: 1229 PAEPLSSFEQCEMTPDYMMSGGKPMYYSTRLNGQLHRKARKVE---EVLEEFETRGSVFE 1285
Query: 744 RSYDPDM---EVDGF---EDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMS 797
R YD + +VD F E + + + Y ++ L+D YGI+ EA +++G +
Sbjct: 1286 REYDKLICPEDVDVFFGNEIKLVQTLTLRDEYVDRMQQLLDEYGIEDEASVVSGHAASIK 1345
Query: 798 KSFTKRRD-------AEAIGMAVRALRKEARAWFKEKSGS---DTEDDA----------- 836
+ RD + + + L RA F E+ G + E+D
Sbjct: 1346 RLAGMERDDYSFYHTDKVVELRYEKLYAVFRAKFFEEFGGEEINIENDGKNTRLKCTKAM 1405
Query: 837 YAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKK 881
+ K WY V Y + + + S PW +D L ++++
Sbjct: 1406 HEKIRQWYFVAYVQPKINKAGRCIGQ----SLPWVAWDALCDLRR 1446
>gi|17508365|ref|NP_493057.1| Protein RRF-2 [Caenorhabditis elegans]
gi|13655331|emb|CAC35914.1| Protein RRF-2 [Caenorhabditis elegans]
Length = 1579
Score = 333 bits (853), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 260/854 (30%), Positives = 410/854 (48%), Gaps = 121/854 (14%)
Query: 136 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 195
+++G V +V TP+RV + PE+ + NRVLR+F RD + LR++F D++ K+ +
Sbjct: 443 IEEGYQRVRKVIFTPTRVIYTPPEMIMGNRVLRNFDRDGTHVLRVTFRDDNNRKMRA--- 499
Query: 196 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA------- 248
+ T + + L +GI++ +R F FL SSSQ+R++ A+
Sbjct: 500 --------NATGELLDICVKKYLEHGIVVANRDFGFLGCSSSQMRDNGAYFMVKNTDNRH 551
Query: 249 -------SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET-LSVHMDEIEIIP 300
S++ +R +GNF +I N+ K ARLGQ F+ S+ T +S+ D +
Sbjct: 552 KNACKMNSKFKPNIDSVRNQLGNFLQIENIPKLMARLGQCFTQSRLTGVSLGPDNYCLTH 611
Query: 301 DVK--IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT 358
D+ ++Y FSDG+G +S EFA++V+ + PS FQ RY G KGV+A DP
Sbjct: 612 DLSGGRSSNGSEYTFSDGVGMMSYEFAQEVSRLMSFGRSVPSCFQFRYRGMKGVLAIDPL 671
Query: 359 SSK----------------KLSLRDSMRKYESELTKLDVLAWSKYQP---CFLNRQLISL 399
K K R S K+E + D + KY LN+ LI++
Sbjct: 672 LDKERNWQEKHGISLSKNIKCVFRPSQIKFEGKQILGDQVEMVKYSSPVLVALNKPLINI 731
Query: 400 LSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE---ALELMSPGENTNILKEL------ 450
L D++ E + E R++ + + + + Q A ++ N LKE
Sbjct: 732 L------DQVSEMQSLECHRRITSRIEELMDLQTLSFAKQMTDEACFRNKLKEFPRRIDI 785
Query: 451 ----LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNY 504
I G+ EPF +++ + + K +I IP+ GRSM+G +DET L Y
Sbjct: 786 DYLRTIWGFTLSNEPFFRSLVKASIKFAITKQLFKEQIQIPSELGRSMLGVVDETGILQY 845
Query: 505 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 564
GQVFVQ + +R + S+ + IV G V++ KNP + PGDVR+ +AV++P
Sbjct: 846 GQVFVQYT-KNHRNILPPRD--SNRKVLGSEIVTGTVLLTKNPGIVPGDVRIFEAVDIPE 902
Query: 565 LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLD 624
LHH+ D VVFPQ G RPHP+E +GSDLDGD Y V WD +L+ + + D+ +++Q
Sbjct: 903 LHHLCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQKLLLERNEEAFDFAVEKNLQTY 962
Query: 625 HDVQIEDV-EEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPK 683
I+D+ + + Y+ D +G+IAN+H +D+ +R C+ LA+K AVDF K
Sbjct: 963 EWEDIDDLMRDVYVEYLKKDLVGLIANSHLHNSDQYGLTSRV--CMNLAKKSCQAVDFSK 1020
Query: 684 TGVP--------------AEIPPHLYVKEYPDFMEKPDK-PTYESQNVIGKLFRAVKDIA 728
+G P E+ P + PD+ D P Y S + GKLFR + I
Sbjct: 1021 SGKPPDELQTTWKTDDATGEMIPPERAERVPDYHVGSDHMPKYVSPRLCGKLFREFQGI- 1079
Query: 729 PHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEI 788
+ I E + D + VDGFE++++DA +Y+ +L + MD YGI++E EI
Sbjct: 1080 DNAMKISEEKSEQYKIEVDESIRVDGFEEYMEDAKKQLASYNGQLKSTMDTYGIQSEGEI 1139
Query: 789 LTGSIMKMSKSFTKR--------RDAEAIGMAVRALRKEARAWFKEKSGSDTE-----DD 835
++G I++M + I + AL + R F ++ G E D
Sbjct: 1140 MSGCIIEMRNRISDSDQDDMSFYNTNRMIETKMTALVSKFRTIFFQQFGGFQEVCTLLPD 1199
Query: 836 AYAKASAWYHVTYHPD----------YWGCYN--QGMNRDHFLSFPWCVYDRLVEIKKDK 883
AY +++ + +P+ Y CY + LSF W YD + +IK+ K
Sbjct: 1200 AYNESNFFNFRCENPNEEIRKKAVAWYRACYECAKSTREPRKLSFAWIAYDVIAKIKETK 1259
Query: 884 T------SIGNAFP 891
+IG A P
Sbjct: 1260 VLENVEMNIGGANP 1273
>gi|45861741|gb|AAS78669.1| RdRp1m truncated protein [Nicotiana benthamiana]
Length = 479
Score = 332 bits (851), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 161/259 (62%), Positives = 206/259 (79%), Gaps = 5/259 (1%)
Query: 1 MELPYRLELPDFKENFAYYKESEDRFVLETGS--AYSRSLDLVPIVGPPDGIALPYEILF 58
+E + LP+F+E+F YYKES ++ +L TG ++S+ L LVPIV P+G+ LPY+ILF
Sbjct: 215 LEFHNGIRLPNFRESFFYYKESGNQVILRTGFTFSFSQKLALVPIVHLPNGVDLPYKILF 274
Query: 59 KINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQ 118
KI+ L+Q+GC G L+ NF++LVDP R +I+CIEHAL+KLY+LKECCY+P RWLT+Q
Sbjct: 275 KISSLIQHGCFPGVALNFNFFQLVDPRRR--NIACIEHALEKLYYLKECCYDPVRWLTEQ 332
Query: 119 YRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFL 178
Y +Y+ R P SP+I+LDDGLVYV RV VTP +VYF GPE+NVSNRVLR++ DIDNFL
Sbjct: 333 YDEYLKRRQLPKSPSITLDDGLVYVRRVVVTPCKVYFSGPEVNVSNRVLRNYSEDIDNFL 392
Query: 179 RISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQ 238
R+SF+DE+ +KIHSTDL PR S+ + RT IY RILSTLRNG +IGD+KFEFLAFSSSQ
Sbjct: 393 RVSFVDEEWEKIHSTDLLPRASTGNGM-RTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQ 451
Query: 239 LRESSAWMFASRYGLTAAE 257
LR++S WMFASR GLTA +
Sbjct: 452 LRDNSVWMFASRPGLTAND 470
>gi|348680026|gb|EGZ19842.1| hypothetical protein PHYSODRAFT_558487 [Phytophthora sojae]
Length = 2706
Score = 331 bits (848), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 259/805 (32%), Positives = 391/805 (48%), Gaps = 91/805 (11%)
Query: 115 LTDQYRKYMTSR-----SKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 169
+ +Q+ Y+ S SSP SL G V V++V VTPSRV FC P+ SNRV RH
Sbjct: 1088 IAEQFSAYLKEERSVLESMCSSP--SLGSGAV-VYKVIVTPSRVVFCPPDPAPSNRVFRH 1144
Query: 170 FRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK- 228
+ + NF+ + F D++++++ D T I RI + L+ GI + +
Sbjct: 1145 WGSE--NFMYMYFRDDNMERL-------------DYTSGNILRRIRNVLKKGIEVPHARD 1189
Query: 229 ---FEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSS 285
F FL S SQ+R SSA L E+R W+G+ + + AKY RLGQ+FSS+
Sbjct: 1190 GCRFNFLGCSLSQVRNSSAIFTL----LDHHEVRSWIGDLSHLTSPAKYLKRLGQAFSST 1245
Query: 286 KETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIR 345
KET +V ++ + +I YVF+DG G+++ A + + L PSAFQIR
Sbjct: 1246 KETFNVSQS---VLDNPVEDITNDDYVFTDGCGEIAKIGAESIVRELNLS-YTPSAFQIR 1301
Query: 346 YGGYKGVVAA------DPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISL 399
GG KGV+ + T + + LR+SM K+ S T L+++A + +L RQ + +
Sbjct: 1302 LGGAKGVLVVSDQDNPEVTREESILLRESMSKFASNHTMLEIVACAGKSEAYLTRQSVLI 1361
Query: 400 LSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENT---NILKELLICGYK 456
LS LGI +++ + Q + + +L ++ A L+ + P + ++L L G K
Sbjct: 1362 LSDLGINEDVLMEMQEQFLSELRTLIASDDGAYFELKAVLPPKVIWWIDVLTRKL--GVK 1419
Query: 457 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGY 516
+ FLS + +T +L + RI I GR++MG D T TL+YG+VFVQ S
Sbjct: 1420 ILDDEFLSSLARTIYHYRLANTVMRARIPIAQGRTLMGVADFTGTLDYGEVFVQYS---- 1475
Query: 517 RQLHGESSLFSSSRSRQRFIVQGLVVVA--KNPCLHPGDVRVLKA-VNVP-ALHHMVDCV 572
+ R++ V VA ++PC HPGD+RVL+ +VP L + DC+
Sbjct: 1476 --------VTEEETGADRYVTLDEVDVAVHRSPCHHPGDIRVLRCRADVPRQLRQLKDCI 1527
Query: 573 VFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP--QQDPPMDY-------TPAQSMQL 623
VFP +G RPHP+EC+G DLDGD++ V WD LIP Q PM + T + +
Sbjct: 1528 VFPCQGPRPHPDECTGGDLDGDMFVVIWDKRLIPSRTQVHEPMAFDEENEGDTSPRGGEF 1587
Query: 624 DHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPK 683
+ + +++ + I +D LG+ +NAH D + E LA S VD +
Sbjct: 1588 YQSTDDDGLIDFYVHSIQDDILGVASNAHLALCDSSHEGSLDESAKALARICSKQVDSLR 1647
Query: 684 TGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVAR 743
+ EI L K YPDFM+ +KP+Y S+ V+GK+FR K I T TK V +
Sbjct: 1648 SEKDLEIVRSLAPKNYPDFMQNKEKPSYPSKKVLGKMFRRCKAIFDTT-----MTKGVTQ 1702
Query: 744 RSY-DPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTK 802
D G+ D++D A Y +L L+ G +TEAE+ TG I++ +
Sbjct: 1703 MPVRDDHFLTAGYTDYVDHAKMLYRQYKLRLRALLLMSGAQTEAELATGMIVEPPSVY-- 1760
Query: 803 RRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAK----ASAWYHVTYHPDYWGCYNQ 858
+ D G + + E + F+ + DT A + ASA Y V Y+
Sbjct: 1761 KADYFRFGEQCKDVFYELQTAFRAQFNGDTSTLASGEELKLASACYFVA--------YDD 1812
Query: 859 GMNRDHFLSFPWCVYDRLVEIKKDK 883
LSF W V D L IK +
Sbjct: 1813 SDASTRSLSFTWIVIDLLTTIKTNN 1837
>gi|119196681|ref|XP_001248944.1| hypothetical protein CIMG_02715 [Coccidioides immitis RS]
Length = 1155
Score = 328 bits (841), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 255/830 (30%), Positives = 397/830 (47%), Gaps = 106/830 (12%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLY--------- 102
+P+ + F+I LV NG ++ P+ FY + R + + AL KL
Sbjct: 318 IPFTLKFQIAKLVWNGEMS-PMKALQFYPFIKRSRDIHGLEVVIEALKKLTTNLEYPSPD 376
Query: 103 -HLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEIN 161
H + L DQ + + + + ++ V VHR QVTPS Y GP I
Sbjct: 377 THESDVDVIALGTLLDQMIERVDFQDSTRLNLVHPNN--VKVHRAQVTPSGTYLYGPNIE 434
Query: 162 VSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNG 221
NRVLR + I+NFLR+ F+DE D ++ P+ S + R L+ G
Sbjct: 435 TKNRVLRQYNDHINNFLRVEFVDETGDPVY---FDPQAS-----LHNIFHERFKGVLKQG 486
Query: 222 ILIGDRKFEFLAFSSSQLRESSAWMFA-----SRYGLTAAEIREWMGNFREIRNVAKYAA 276
I IG F FL FS S LR + W A S A I + +G+F I + AK AA
Sbjct: 487 IKIGGCHFSFLGFSHSSLRSQTCWFVAPFTTSSGERFDAQSIIQGLGSFSHIYSPAKLAA 546
Query: 277 RLGQSFSSSKETLSVHMDEIEII-PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK 335
R+GQ+FS ++ ++++ D + + PD+K + VFSDG+G S K+ S+ L+
Sbjct: 547 RIGQTFSETQTSIAIPEDAVFLNEPDMK----RNGRVFSDGVGTFSPRLLYKIWSEYALR 602
Query: 336 DN-PPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELT-KLDVLAWS-KYQPCF 391
+ P+ FQIR+ G KG+V+ D ++L LR+SM K+ + ++V + P +
Sbjct: 603 EKVKPTVFQIRFAGAKGMVSLDTRLKGEQLRLRESMVKFSARRAFNIEVCGSGIRALPFY 662
Query: 392 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI--LKE 449
LN Q+I +L LG+ F K Q + + +L ++ K + LE S + + L E
Sbjct: 663 LNAQIIKILEDLGVPPTGFIKLQSDEIERLLSVGKSASKTSQFLEESSIAKEVRVPWLIE 722
Query: 450 LLI-CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 508
+L G+ D +PFL ++Q K+ +L+ + RI +P ++ G +DET LN G++F
Sbjct: 723 ILHGLGFHHDQDPFLRSVVQLAIFFKMRDLKYRARIRVPEAVTLYGIMDETGYLNEGEIF 782
Query: 509 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA---L 565
F + + +V+ V+V + P LHPGDV+ KAV+VP L
Sbjct: 783 CT---------------FLNEEGGREILVRDQVIVTRAPALHPGDVQYAKAVDVPENSPL 827
Query: 566 HHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDH 625
+ +CV+F Q G R P+ SG DLDGD+Y V +D+ L+PP PP +Y + LD
Sbjct: 828 RSLHNCVIFSQHGFRDLPSMLSGGDLDGDLYNVIYDERLMPPCTYPPANYPKVEEKLLDR 887
Query: 626 DVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTG 685
+V +D+ ++F ++ D LG IA H AD+ P + CL LAE S+AVDF K+G
Sbjct: 888 EVVRDDIIDFFVTFMQQDQLGRIATIHQAIADQRPAGTLDQDCLLLAELHSVAVDFSKSG 947
Query: 686 VPAE---IPPHLYVKEYPDFM------------------------------EKPDKPTYE 712
+P + IP + YPDFM E+P + Y+
Sbjct: 948 IPVDLTRIPKR--PRYYPDFMAPSPRIKIADSIEVVEEEQYLAEDEDDDEDERPQRRYYK 1005
Query: 713 SQNVIGKLFRAVK-----DIAPHTSCIRLFTKEVARRSYD-PDMEVDGFE-DH-IDDAIY 764
S ++G ++R + + + S +R + +D E +GF+ DH ++D
Sbjct: 1006 SNRILGVMYRNINEQEFLNAVRNASKLRRDDNTLLNAIWDYVASETEGFQWDHLVEDGRK 1065
Query: 765 HKGNYDYKLGNLMDYYGIK------TEAEILTGSIMKMSKSFTKRRDAEA 808
K Y+ KL +M Y TE E++ GSI+ + S RRD EA
Sbjct: 1066 VKDIYEDKLREIMQQYSKTPWKSSLTEVEVVMGSILGQN-SKQSRRDKEA 1114
>gi|241997884|ref|XP_002433585.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215495344|gb|EEC04985.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 528
Score = 326 bits (836), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 210/549 (38%), Positives = 293/549 (53%), Gaps = 45/549 (8%)
Query: 258 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE------------ 305
IR+ +G+ IR+V K AR+GQ+FS S ++V + DV+
Sbjct: 1 IRQGIGDLSSIRSVPKLMARMGQAFSQSLGFVTVPRQYTAVEADVRCRAPPGASAAALAE 60
Query: 306 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNP-PSAFQIRYGGYKGVVAADPT-SSKKL 363
K Y+FSDGIG++S RKV L+D P A QIRYGG KG++ DPT + +++
Sbjct: 61 AAKRDYIFSDGIGRISPALMRKVYRSLELEDGEEPCAVQIRYGGCKGMLLVDPTMAGRRI 120
Query: 364 SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 423
R SM K+ S+ L VL SK + +LNR +I++L GI + F Q R LD+
Sbjct: 121 VFRTSMCKFPSDHEDLYVLKTSKPRVLYLNRPMITILEQSGIRAKAFLALQN---RVLDS 177
Query: 424 ILTDPLKAQEALELMSPGENTNI-LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT 482
+ L A EA +++ + KEL G EPF +++ L E TK
Sbjct: 178 FINSMLDAHEAAQVLCGYCALRLPYKELAGVGVDLTVEPFFRGLIRAVNRKVLSEWLTKA 237
Query: 483 RIFIP--NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL 540
RI +P GR+M G LDET TL YGQVFVQ S + +F + I++G
Sbjct: 238 RILVPPEKGRTMFGVLDETDTLEYGQVFVQYS----------NDMFRYKATDPATILKGD 287
Query: 541 VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCW 600
V+V KNPC+HPGD+R L AV+VP LHH+ DC+VFP KG RPHP+E SGSDLDGD Y V W
Sbjct: 288 VIVTKNPCMHPGDIRRLTAVDVPRLHHVRDCIVFPAKGERPHPDEMSGSDLDGDEYSVLW 347
Query: 601 DDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREP 660
++LI PM Y + ++++D+ ++F YI D +G+IANAH V+AD
Sbjct: 348 YEDLIFRNNCSPMHYYSDPPKERKAPIEVQDMIDFFCQYIKGDKIGLIANAHLVWADMLD 407
Query: 661 RKARSEPCLQLAEKFSIAVDFPKTG-----VPAEIPPHLYVKEYPDFMEKPD-KPTYESQ 714
S C LA K ++ +DF K G +E PP YPDFMEK D K TY S+
Sbjct: 408 GGINSRRCRDLARKCAVNLDFAKRGDLKGFQNSEKPPM-----YPDFMEKLDTKNTYCSK 462
Query: 715 NVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLG 774
V+G+L+R K + T C+ + + DP + +DG E+ I+ A Y K+
Sbjct: 463 KVLGQLYRNCKKVELSTECLEVVEDSLP----DPRLLLDGREEFIESARTSYRRYAMKIR 518
Query: 775 NLMDYYGIK 783
L+ YGI+
Sbjct: 519 ALLKSYGIE 527
>gi|268563038|ref|XP_002638736.1| C. briggsae CBR-EGO-1 protein [Caenorhabditis briggsae]
Length = 1631
Score = 324 bits (831), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 260/866 (30%), Positives = 408/866 (47%), Gaps = 159/866 (18%)
Query: 136 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 195
+ +G V ++ TP+RV + PE + NRVLR + D LRI+F D+D K+
Sbjct: 484 MREGYQRVRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMR---- 539
Query: 196 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTA 255
T+ T T + + + L NGI + R F +L S+SQ+R++ A+ F +Y ++
Sbjct: 540 -------TNKTSTLLEKTVNTYLMNGITVAGRNFGYLGSSNSQMRDNGAY-FMEKY--SS 589
Query: 256 AEIREW----------------------MGNFREIRNVAKYAARLGQSFSSSKETLSVHM 293
++ RE+ +G F I N+ K ARLGQ F+ S+ + V++
Sbjct: 590 SQCREYEKMCRMAPPITFNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLS-GVNL 648
Query: 294 DEIEIIPDVKIEIGKT----KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGY 349
D + + GK +Y FSDG+G +S FA+ V+ PS FQ R+ G
Sbjct: 649 DRCTYVTMYDLTGGKNIKGDEYTFSDGVGMMSMNFAQMVSQVMDFGKGVPSCFQFRFRGM 708
Query: 350 KGVVAADP--TSSKKLSLRDSMRKYESELT----------------------KLDVLAWS 385
KGV+A +P ++ S+ + +++ + +++++ +S
Sbjct: 709 KGVIAVEPFLDDLRQWSIENDIQEVSEDTAWGLNCVFRPSQIKFISKRHPRDQVEIVKYS 768
Query: 386 KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE---ALELMSPGE 442
P LN+ I++L D++ E + E R++ + + L Q A +++
Sbjct: 769 SPVPVSLNKPFINIL------DQVSEMQSLECHRRVTNRIEELLDRQMLSFAQQMIDETF 822
Query: 443 NTNILKEL----------LICGYKPDAEPFL-SMMLQTFRASKLLELRTKTRIFIPN--G 489
N LKEL G+ +EPF S++ + + S +LR K +I IP G
Sbjct: 823 CRNRLKELPRRIDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITKQLR-KEQIPIPADLG 881
Query: 490 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 549
RSM+G +DET L YGQ+FVQ + R L + S+SRS ++ G V++ KNPC+
Sbjct: 882 RSMLGVVDETGRLQYGQIFVQYT----RNLALKLPPKSASRS----VLTGTVLLTKNPCI 933
Query: 550 HPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ 609
GDVR+ +AV++P LHHM D VVFPQ G RPHP+E +GSDLDGD Y + WD +L+ +
Sbjct: 934 VAGDVRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDRN 993
Query: 610 DPPMDYTPAQSMQLDHDVQIEDV-EEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPC 668
+ P D+T + + +I+D+ E++ Y+ DS+G I+N+H +D+ AR C
Sbjct: 994 EDPFDFTSEKQKSSFKEEEIDDLMREFYVKYLKLDSVGTISNSHLHNSDQYGLNARV--C 1051
Query: 669 LQLAEKFSIAVDFPKTGVPAE---------------IPPHLYVKEYPDF-MEKPDKPTYE 712
+ LA+K AVDF K+G P E IPP + PD+ M P Y
Sbjct: 1052 MDLAKKNCQAVDFTKSGQPPEELERKWRKDEVTGEMIPPE-RAERVPDYHMGNDHTPMYV 1110
Query: 713 SQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYK 772
S + GKLFR K I I E + D + VDG+++++ A Y+ +
Sbjct: 1111 SPRLCGKLFREFKAIDDVLK-ISEERDEQVEITIDETIMVDGYKEYMHSAREDLARYNAQ 1169
Query: 773 LGNLMDYYGIKTEAEILTGSIMKMSKSFTKR--------RDAEAIGMAVRALRKEAR--- 821
L ++M+ YGIKTE E+ +G I+ M + + + I V L K+ R
Sbjct: 1170 LRSMMENYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFYNTNQMIETKVTNLYKKYREHF 1229
Query: 822 ------AWFKEKSG-----SDTE----------DDAYAKASAWYHVTYHPDYWGCYNQG- 859
AW G SDT + KA AWY CY +
Sbjct: 1230 FEEFEGAWEANTEGTSRGESDTNILQRHCRAPTQNMMKKAVAWYR--------ACYEEAR 1281
Query: 860 -MNRDHFLSFPWCVYDRLVEIKKDKT 884
+ LSF W +YD L +K+ K+
Sbjct: 1282 VTRENKKLSFAWLMYDVLAMVKQTKS 1307
>gi|407917163|gb|EKG10484.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina phaseolina
MS6]
Length = 1221
Score = 320 bits (821), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 246/778 (31%), Positives = 381/778 (48%), Gaps = 96/778 (12%)
Query: 140 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 199
+ +HRV +TP+ Y GPE VSNRVLR + DNFLR+ F+DE+ D I P+
Sbjct: 426 IALIHRVIITPAGTYLEGPEPEVSNRVLRKYPEHTDNFLRVQFVDEEGDAIR---YEPK- 481
Query: 200 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYGLTAA 256
+S +I + R S L I IG F FL FS S LR + W F + L AA
Sbjct: 482 TSLGEI----FHNRFKSVLDGEINIGGHSFAFLGFSHSSLRSQTCWFMAPFVQKLSLIAA 537
Query: 257 -EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSD 315
E+ + +G+F +IR+ AK AAR+GQ+FS + T++V+ + I++I DV+ + G ++FSD
Sbjct: 538 QEVIKGLGDFSKIRSPAKCAARIGQAFSDTSGTVTVNEEIIKMIDDVRNDRG---HIFSD 594
Query: 316 GIGKVSAEFARKVASKCG-LKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYE 373
G+GK+S + ++V + + P+ QIR+GG KGVV+ D ++L LR SM K+
Sbjct: 595 GVGKISYKLLKRVWKEYQQARGQRPTCLQIRFGGAKGVVSLDDRLPGEQLVLRPSMVKFY 654
Query: 374 SELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA 431
T + + ++P +LNRQ I +L LG+ ++F Q V QL I P+ A
Sbjct: 655 GAGTWNIEICGANFRPLPMYLNRQFIKILEDLGVPAQVFLDLQSAMVEQLRRITKSPVNA 714
Query: 432 QEALELMSPGENT---NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN 488
LE G+ T ++L+ L G+ + + FLS +++ S+L +++ ++RI +
Sbjct: 715 ATFLEHARVGQATRMPHLLRMLDELGFSFNEDEFLSHVVEIAALSQLRDIKHRSRIQVDR 774
Query: 489 GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 548
G ++ G +DET L +++ I G + R ++ + G V+V ++P
Sbjct: 775 GVTLYGIMDETGFLGEDEIYCVIERIG-----------DNGRPKRTVLSGGEVIVTRSPA 823
Query: 549 LHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
+HPGDV+ +AV+VP L + + VVF KG R P++ SG DLDGD+Y V +D L+
Sbjct: 824 MHPGDVQKARAVDVPPDSPLQALSNVVVFSSKGQRDLPSQLSGGDLDGDLYNVIFDRRLM 883
Query: 606 PPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARS 665
P P DY + + V +D+ ++F ++ D LG I+N H ADR P
Sbjct: 884 PRVTYQPADYKKVPPLDIGRPVTRQDITDFFVKFMETDQLGRISNIHMQLADRRPNGTLD 943
Query: 666 EPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEY-PDFMEK------------------- 705
CL+LAE SIAVDF KTG+P ++ V PDFM
Sbjct: 944 PDCLKLAEMASIAVDFSKTGIPVDMSQCPRVDMIRPDFMANGPRVIVEKKGAVFQDEDED 1003
Query: 706 -------------PDKPT---YESQNVIGKLFRAV-------------KDIAPHTSCIRL 736
PD T YES+ V+G+L+RA+ + H + L
Sbjct: 1004 DLLDDDDAVGALDPDFKTFRYYESERVLGQLYRAIDEKKIFQEMQRYATETKSHLGGLNL 1063
Query: 737 FTKEVARRSYDPDM-EVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIK-----TEAEILT 790
+ A + + + DG++ A K Y+ L ++M Y +E E+
Sbjct: 1064 MDQVWAYVLREAALIQWDGYKPL---ARSIKETYESNLLDIMSDYSTHSQYPLSELEVFG 1120
Query: 791 GSIMKMSKSFTKRRDAE-AIGMAVRALRKEARAWFKEKSGSDTE-DDAYAKASAWYHV 846
G+I+ S RR E + M R R A + G D + D+A A+A A V
Sbjct: 1121 GNIIGKSTGAQNRRTRERTMEMNERFERDVAFTVERITHGDDGDRDEALARAIACLAV 1178
>gi|308510538|ref|XP_003117452.1| CRE-RRF-3 protein [Caenorhabditis remanei]
gi|308242366|gb|EFO86318.1| CRE-RRF-3 protein [Caenorhabditis remanei]
Length = 1779
Score = 319 bits (817), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 245/836 (29%), Positives = 399/836 (47%), Gaps = 99/836 (11%)
Query: 118 QYRKYMTSRS-KPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN 176
QY + ++ S + A L V V +V V+PSRV PE+ + NR++R F D
Sbjct: 652 QYERLLSGESLQDVGLAKPLPKNCVSVAKVIVSPSRVLLMAPEVMMVNRIVRRFGPDYA- 710
Query: 177 FLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSS 236
LR F D++L ++ D S + D + I +TL++GI I DR + FL +S+
Sbjct: 711 -LRCVFRDDNLGRLAIRDFS---VNNIDHMSNVVTEAIYNTLKSGIKIADRVYSFLGWSN 766
Query: 237 SQLRESSAWMFASRYGL-------TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 289
SQ+R+ +++A R T +IR WMG+FR+ +V K +R+GQ F+ ++ T+
Sbjct: 767 SQMRDQGCYLYAPRVDPITGAVTGTVEDIRIWMGDFRDAVSVPKMMSRMGQCFTQAQPTV 826
Query: 290 SVH--MDEIEIIPDVKIEIGK------------TKYVFSDGIGKVSAEFARKVASKCGLK 335
V + ++ + VK++ K+ FSDG G++S + A ++ LK
Sbjct: 827 RVSPILFQLNFLFQVKLQRHHWIVEPDMEGGPDNKFCFSDGCGRISYKLAGHISKILDLK 886
Query: 336 DNPPSAFQIRYGGYKGVVAADPT-----SSKKLSLRDSMRKY-----ESELTKLDVLAWS 385
P+ FQ+R+ G+KG++ DPT + K+ R S +K+ + + L+V+ ++
Sbjct: 887 -AIPACFQVRFKGFKGILVIDPTIDDIMNMPKVIFRKSQQKFGEGGGDLQDEYLEVVKYA 945
Query: 386 KYQPCFLNRQLISLLSTLG----------IWDEIFEKKQREAVRQLDAILTDPLKAQEAL 435
P LNR I++L + I + +RE + +L + A+E +
Sbjct: 946 MPSPVCLNRPFITILDQVSAKQSTASHRRITKRVHYYLERELCSLSNMLLNENQAAEELV 1005
Query: 436 ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMM 493
+ + N+ + G++ +P + ML ++ +K +IF+P GRSM
Sbjct: 1006 NRTNLPIDWNLASKR--AGFQLSTDPLVRSMLFAIYRYNIIHHISKAKIFLPPNLGRSMY 1063
Query: 494 GCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGD 553
G +DET L YGQVF+Q S RQ S + G V++ KNPC PGD
Sbjct: 1064 GVVDETGLLQYGQVFIQYSPT-IRQT-----------SDTPILKTGKVLITKNPCHVPGD 1111
Query: 554 VRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPM 613
VRV +AV PAL H+VD VVFP+ G RPHP+E +GSDLDGD Y + WD +++ + M
Sbjct: 1112 VRVFEAVWQPALAHLVDVVVFPRHGPRPHPDEMAGSDLDGDEYSIIWDQDMLLDYNETAM 1171
Query: 614 DYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAE 673
+ + S + D + +D+ E+F Y+ DS+G ++NAH V+AD E C +A
Sbjct: 1172 VFPSSSSQEEDKEPTTDDMVEFFLRYLQQDSIGRMSNAHLVYADLN--GLFHENCHSIAL 1229
Query: 674 KFSIAVDFPKTGVPAE-IPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDI----A 728
K ++AVDFPK+GVPAE + H PD+M KP Y S + G+L R + +
Sbjct: 1230 KCAVAVDFPKSGVPAEPLTSHEQCDVTPDYMISGGKPMYYSARLNGQLHRKARKVEEVLE 1289
Query: 729 PHTSCIRLFTKEVARRSYDPDMEV-DGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAE 787
+ S +F E + +++V G E + + + Y ++ L+D YGI+ EA
Sbjct: 1290 EYESRGSIFEGEYDKLICPENVDVFFGSESKLVQVMTLRDEYIDRMQQLLDEYGIEDEAS 1349
Query: 788 ILTGSIMKMSKSFTKRRD-------AEAIGMAVRALRKEARAWFKEKSGSDTEDDA---- 836
+++G + + RD + + + L RA F E+ G + +
Sbjct: 1350 VVSGHAASIKRLAGMERDDYSFYHTDKVVELRYEKLYSVFRAKFFEEFGGEEANTVHDGK 1409
Query: 837 ----------YAKASAWYHVTY-HPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKK 881
+ K WY V Y P R S PW +D L +++
Sbjct: 1410 DTRVACTPAMHEKIRQWYFVAYVQPK-----KNKTGRYIGQSLPWVAWDVLCSLRR 1460
>gi|392886219|ref|NP_001250556.1| Protein RRF-1, isoform b [Caenorhabditis elegans]
gi|345107385|emb|CCD31066.1| Protein RRF-1, isoform b [Caenorhabditis elegans]
Length = 1520
Score = 319 bits (817), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 263/876 (30%), Positives = 420/876 (47%), Gaps = 141/876 (16%)
Query: 138 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 197
+G V +V TP+RV + PE + NRVLR F +D LR++F D++ K+ S
Sbjct: 378 EGYQRVRKVIFTPTRVIYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRS----- 432
Query: 198 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY------ 251
++T + L +G+ I +R++ FL S+SQ+R++ A+ F R+
Sbjct: 433 ------NVTGKLLDRTANKYLEHGVRIANREYGFLGCSNSQMRDNGAY-FMMRFTDKQLD 485
Query: 252 -----GLTAA---------EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIE 297
TA+ E+R +G F EI NV K ARLGQ F+ S+ T V + +
Sbjct: 486 RFYKCNPTASNINFKPKIDEVRFQLGRFSEIENVPKLMARLGQCFTQSRLT-GVGLGRDD 544
Query: 298 IIPDVKIEIGK----TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVV 353
+ G+ ++Y FSDG+G +S +FA++V+ PS FQIR+ G KGV+
Sbjct: 545 YCSTYDLTGGRATNGSEYTFSDGVGMMSYQFAQEVSQAMQFGKAVPSCFQIRFRGNKGVI 604
Query: 354 AADP--------------TSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFL---NR 394
A +P TS K K R S K++++ D + K+ L N+
Sbjct: 605 AIEPFLDEIRKWALVNGVTSMKMAKCLFRPSQIKFQAKAISGDQIEMVKFSSAVLVALNK 664
Query: 395 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENT---NILKEL- 450
I++L D++ E + + +++ + + + + Q E T N LKE
Sbjct: 665 PFINIL------DQVSEMQSLDCHKRITSRIEELMDRQILSFAKQMNEETFCRNKLKEFP 718
Query: 451 ---------LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDET 499
+ G+ +EPF +++ + + K +I IP+ GRSM+G +DET
Sbjct: 719 RRIDIDNLRTMWGFTLSSEPFFRSLIKASIKFSITKQLCKEQIQIPSELGRSMLGVVDET 778
Query: 500 RTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 559
L YGQ+FVQ + ++L S +++ IV G V++ KNPC+ PGDVR+ +A
Sbjct: 779 GRLQYGQIFVQYTKNYKKKLPPRDS---NNKVHGSEIVTGTVLLTKNPCIVPGDVRIFEA 835
Query: 560 VNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQ 619
V++P LHHM D VVFPQ G RPHP+E +GSDLDGD Y V WD EL+ + + P D+ +
Sbjct: 836 VDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQELLLERNEEPFDFA-VE 894
Query: 620 SMQLDHDVQIEDV--EEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSI 677
+++ +D + DV E++ Y+ DS+G I+N+H +D+ +R C+ LA+K
Sbjct: 895 KIKVPYDREKLDVLMREFYVTYLKLDSVGQISNSHLHNSDQYGLNSRV--CMDLAKKNCQ 952
Query: 678 AVDFPKTGVPAE---------------IPPHLYVKEYPDF-MEKPDKPTYESQNVIGKLF 721
AVDF K+G P + IPP + PDF M P Y S + GKLF
Sbjct: 953 AVDFTKSGQPPDPLETKWRADPVTFEVIPPE-NPERIPDFHMGNERSPMYVSPRLCGKLF 1011
Query: 722 RAVKDIAPHTSCIRLFTK--EVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDY 779
R + I + I++ + E D + V GFE +++ A +Y+ +L ++M+
Sbjct: 1012 REFQAI---DNVIKISEERDEQYNIELDETIFVTGFERYMESAQKQLSSYNGQLRSIMEN 1068
Query: 780 YGIKTEAEILTGSIMKMSKSFTKR--------RDAEAIGMAVRALRKEARAWFKEKSGSD 831
YGI++E EI++G I++M + + + I + +L + R F E+ G
Sbjct: 1069 YGIRSEGEIMSGCIVEMRNRISDKDQDDMSFYNTNQMIETKMTSLVCKFRETFFEEFGGF 1128
Query: 832 TED-----DAYAKASAWYHVTYHPD----------YWGCYN--QGMNRDHFLSFPWCVYD 874
T +AY + + PD Y CY Q LSF W YD
Sbjct: 1129 TVKCTLLPNAYDNGNCLNYRCEDPDQEVRKKAVAWYRACYECAQSTREVRKLSFAWIAYD 1188
Query: 875 RLVEIKK------DKTSIGNAFPA---LEQQFRQGL 901
+ ++K+ ++ IG A P LE+ +Q L
Sbjct: 1189 VIAKVKETNVLNNERMQIGGANPMYTFLEEHRKQYL 1224
>gi|384495849|gb|EIE86340.1| hypothetical protein RO3G_11051 [Rhizopus delemar RA 99-880]
Length = 1099
Score = 319 bits (817), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 199/554 (35%), Positives = 298/554 (53%), Gaps = 39/554 (7%)
Query: 50 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 109
+ L ++ L+ + + + LD FY+ + + S + L+ + K +
Sbjct: 578 LGLDFDTLYSLESAISYNFLNVYNLDRTFYQAL----KALECSAVREYLEMVVIRKTRLW 633
Query: 110 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 169
+P L+DQ ++ PS V++V +TP+ V+ + V NRVLRH
Sbjct: 634 DPLADLSDQQKRLGAIHKVPSR--------CFLVNKVIITPTSVFIEPRSLEVGNRVLRH 685
Query: 170 FRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKF 229
F+ ID FLR+ F+D+ +++ + D +Y RI G+ IGDR +
Sbjct: 686 FQDHIDRFLRVQFLDDGFNRVCAV------RKPGDRMNEALYVRIRKLFDQGLQIGDRYY 739
Query: 230 EFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 289
EFLA+SSSQLRE W FAS LTA IR WMG+F + V+KYAAR+GQ FSSS
Sbjct: 740 EFLAYSSSQLREHGCWFFASGKDLTAEMIRRWMGDFSREKVVSKYAARMGQCFSSSVAIC 799
Query: 290 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGY 349
S H DE+E IPD+K Y+FSDG+GK+S A+K ++ L + PSA Q+R GG
Sbjct: 800 SFHADEVETIPDMK----HNGYIFSDGVGKMSLALAKKTRNQMNLGVD-PSALQVRLGGS 854
Query: 350 KGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWD 407
KGV+A DP K + LR S K++++ +L+V+ + Y+ +LNRQ+I L+S LG+ D
Sbjct: 855 KGVLAVDPNLPKGVHVQLRPSQIKFDTDHLELEVVKIATYRNGYLNRQIIILMSALGVRD 914
Query: 408 EIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENT-NILKELLICGYKPDAEPFLSMM 466
+ ++ + ILTDPL+A AL S T N+L + G+ +P++ +
Sbjct: 915 AYVLELVNTMLQNTEKILTDPLEALYALSPRSDDFGTSNMLVNAIQAGFLKSGDPYIQNI 974
Query: 467 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLF 526
L FR S L EL+ K ++ +P ++G +DET L +VFVQ+
Sbjct: 975 LVLFRCSLLKELKKKAKVLVPKSACLIGVVDETGLLESNEVFVQVWD------------- 1021
Query: 527 SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNEC 586
+S+ ++ V + +NP LHPGD+RVL+AV++P LHH+ + VVF KG R P+ C
Sbjct: 1022 NSATGNINQVITDRVSIFRNPSLHPGDLRVLQAVDIPELHHLKNVVVFSSKGERDVPSMC 1081
Query: 587 SGSDLDGDIYFVCW 600
SG DLDGD Y W
Sbjct: 1082 SGGDLDGDEYTYEW 1095
>gi|392886217|ref|NP_001250555.1| Protein RRF-1, isoform a [Caenorhabditis elegans]
gi|8886070|gb|AAF80368.1|AF159144_1 RRF-1 [Caenorhabditis elegans]
gi|14530419|emb|CAC42290.1| Protein RRF-1, isoform a [Caenorhabditis elegans]
Length = 1601
Score = 318 bits (816), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 263/876 (30%), Positives = 420/876 (47%), Gaps = 141/876 (16%)
Query: 138 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 197
+G V +V TP+RV + PE + NRVLR F +D LR++F D++ K+ S
Sbjct: 459 EGYQRVRKVIFTPTRVIYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRS----- 513
Query: 198 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY------ 251
++T + L +G+ I +R++ FL S+SQ+R++ A+ F R+
Sbjct: 514 ------NVTGKLLDRTANKYLEHGVRIANREYGFLGCSNSQMRDNGAY-FMMRFTDKQLD 566
Query: 252 -----GLTAA---------EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIE 297
TA+ E+R +G F EI NV K ARLGQ F+ S+ T V + +
Sbjct: 567 RFYKCNPTASNINFKPKIDEVRFQLGRFSEIENVPKLMARLGQCFTQSRLT-GVGLGRDD 625
Query: 298 IIPDVKIEIGK----TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVV 353
+ G+ ++Y FSDG+G +S +FA++V+ PS FQIR+ G KGV+
Sbjct: 626 YCSTYDLTGGRATNGSEYTFSDGVGMMSYQFAQEVSQAMQFGKAVPSCFQIRFRGNKGVI 685
Query: 354 AADP--------------TSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFL---NR 394
A +P TS K K R S K++++ D + K+ L N+
Sbjct: 686 AIEPFLDEIRKWALVNGVTSMKMAKCLFRPSQIKFQAKAISGDQIEMVKFSSAVLVALNK 745
Query: 395 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENT---NILKEL- 450
I++L D++ E + + +++ + + + + Q E T N LKE
Sbjct: 746 PFINIL------DQVSEMQSLDCHKRITSRIEELMDRQILSFAKQMNEETFCRNKLKEFP 799
Query: 451 ---------LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDET 499
+ G+ +EPF +++ + + K +I IP+ GRSM+G +DET
Sbjct: 800 RRIDIDNLRTMWGFTLSSEPFFRSLIKASIKFSITKQLCKEQIQIPSELGRSMLGVVDET 859
Query: 500 RTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 559
L YGQ+FVQ + ++L S +++ IV G V++ KNPC+ PGDVR+ +A
Sbjct: 860 GRLQYGQIFVQYTKNYKKKLPPRDS---NNKVHGSEIVTGTVLLTKNPCIVPGDVRIFEA 916
Query: 560 VNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQ 619
V++P LHHM D VVFPQ G RPHP+E +GSDLDGD Y V WD EL+ + + P D+ +
Sbjct: 917 VDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQELLLERNEEPFDFA-VE 975
Query: 620 SMQLDHDVQIEDV--EEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSI 677
+++ +D + DV E++ Y+ DS+G I+N+H +D+ +R C+ LA+K
Sbjct: 976 KIKVPYDREKLDVLMREFYVTYLKLDSVGQISNSHLHNSDQYGLNSRV--CMDLAKKNCQ 1033
Query: 678 AVDFPKTGVPAE---------------IPPHLYVKEYPDF-MEKPDKPTYESQNVIGKLF 721
AVDF K+G P + IPP + PDF M P Y S + GKLF
Sbjct: 1034 AVDFTKSGQPPDPLETKWRADPVTFEVIPPE-NPERIPDFHMGNERSPMYVSPRLCGKLF 1092
Query: 722 RAVKDIAPHTSCIRLFTK--EVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDY 779
R + I + I++ + E D + V GFE +++ A +Y+ +L ++M+
Sbjct: 1093 REFQAI---DNVIKISEERDEQYNIELDETIFVTGFERYMESAQKQLSSYNGQLRSIMEN 1149
Query: 780 YGIKTEAEILTGSIMKMSKSFTKR--------RDAEAIGMAVRALRKEARAWFKEKSGSD 831
YGI++E EI++G I++M + + + I + +L + R F E+ G
Sbjct: 1150 YGIRSEGEIMSGCIVEMRNRISDKDQDDMSFYNTNQMIETKMTSLVCKFRETFFEEFGGF 1209
Query: 832 TED-----DAYAKASAWYHVTYHPD----------YWGCYN--QGMNRDHFLSFPWCVYD 874
T +AY + + PD Y CY Q LSF W YD
Sbjct: 1210 TVKCTLLPNAYDNGNCLNYRCEDPDQEVRKKAVAWYRACYECAQSTREVRKLSFAWIAYD 1269
Query: 875 RLVEIKK------DKTSIGNAFPA---LEQQFRQGL 901
+ ++K+ ++ IG A P LE+ +Q L
Sbjct: 1270 VIAKVKETNVLNNERMQIGGANPMYTFLEEHRKQYL 1305
>gi|17506499|ref|NP_492132.1| Protein EGO-1 [Caenorhabditis elegans]
gi|8886068|gb|AAF80367.1| RNA-directed RNA polymerase related EGO-1 [Caenorhabditis elegans]
gi|14530420|emb|CAB01701.2| Protein EGO-1 [Caenorhabditis elegans]
Length = 1632
Score = 318 bits (815), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 253/865 (29%), Positives = 406/865 (46%), Gaps = 157/865 (18%)
Query: 136 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 195
+ +G V ++ TP+RV + PE + NRVLR + D LRI+F D+D K+
Sbjct: 484 MREGYQRVRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMR---- 539
Query: 196 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTA 255
T+ T T + + L+NGI + R F +L S+SQ+R++ A+ F +Y ++
Sbjct: 540 -------TNKTSTMLEKTVNQYLKNGITVAGRNFGYLGSSNSQMRDNGAY-FMEKY--SS 589
Query: 256 AEIREW----------------------MGNFREIRNVAKYAARLGQSFSSSKETLSVHM 293
++ RE+ +G F I N+ K ARLGQ F+ S+ + V++
Sbjct: 590 SQCREYERIYQIKPPITFNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLS-GVNL 648
Query: 294 DEIEIIPDVKIEIGKT----KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGY 349
+ + + GK +Y FSDG+G +S FA+ V+ PS FQ R+ G
Sbjct: 649 ERCTYMTTYDLTGGKNLKGDEYTFSDGVGMMSYRFAQMVSEVMDFGKGVPSCFQFRFRGM 708
Query: 350 KGVVAADP---------------------TSSKKLSLRDSMRKYESEL---TKLDVLAWS 385
KGV++ +P + S R S K+ S+ +++++ +S
Sbjct: 709 KGVISIEPLLDNLRQWSISYNISKPSDDSSWSLNCMFRPSQIKFISKRHPRDQVEIVKYS 768
Query: 386 KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE---ALELMSPGE 442
P LN+ I++L D++ E + E R++ + + L Q A +++
Sbjct: 769 SPVPVALNKPFINIL------DQVSEMQSLECHRRVTNRIEELLDRQMLSFAQQMVDETF 822
Query: 443 NTNILKEL----------LICGYKPDAEPFL-SMMLQTFRASKLLELRTKTRIFIPN--G 489
N LKEL G+ +EPF S++ + + S +LR K +I IP G
Sbjct: 823 CRNRLKELPRRVDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITRQLR-KEQIPIPCDLG 881
Query: 490 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 549
RSM+G +DET L YGQ+FVQ + +L ++ R ++ G V++ KNPC+
Sbjct: 882 RSMLGVVDETGRLQYGQIFVQYTK--------NLALKLPPKNAARQVLTGTVLLTKNPCI 933
Query: 550 HPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ 609
GDVR+ +AV++P LHHM D VVFPQ G RPHP+E +GSDLDGD Y + WD +L+ +
Sbjct: 934 VAGDVRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDKN 993
Query: 610 DPPMDYTPAQSMQLDHDVQIEDV-EEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPC 668
+ P D+T + + +I+D+ E++ Y+ DS+G I+N+H +D+ AR C
Sbjct: 994 EDPYDFTSEKQKASFKEDEIDDLMREFYVKYLKLDSVGQISNSHLHNSDQYGLNARV--C 1051
Query: 669 LQLAEKFSIAVDFPKTGVP--------------AEIPPHLYVKEYPDF-MEKPDKPTYES 713
+ LA+K AVDF K+G P E+ P + PD+ M P Y S
Sbjct: 1052 MDLAKKNCQAVDFTKSGQPPDELERKWRKDEETGEMIPPERAERVPDYHMGNDHTPMYVS 1111
Query: 714 QNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKL 773
+ GKLFR K I I E S D +++DG+ +++ A Y+ +L
Sbjct: 1112 PRLCGKLFREFKAIDDVLK-ISEERDEQVEISIDETIKIDGYTEYMASAKNDLARYNAQL 1170
Query: 774 GNLMDYYGIKTEAEILTGSIMKMSKSFTKR--------RDAEAIGMAVRALRKEARAWFK 825
++M+ YGIKTE E+ +G I+ M + + + I + L K+ R F
Sbjct: 1171 RSMMENYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFFNTNQMIETKLTNLFKKYREIFF 1230
Query: 826 E--KSGSDTEDDAYA----------------------KASAWYHVTYHPDYWGCYNQG-- 859
E + G + +A++ KA AWY CY +
Sbjct: 1231 EEFEGGWEGNTEAFSRYGRDSNILQRQCRAPTVQMMKKAVAWYR--------ACYEEARI 1282
Query: 860 MNRDHFLSFPWCVYDRLVEIKKDKT 884
+ LSF W YD + ++K+DK+
Sbjct: 1283 TRENKKLSFAWLAYDVIAKVKQDKS 1307
>gi|308474534|ref|XP_003099488.1| hypothetical protein CRE_01169 [Caenorhabditis remanei]
gi|308266677|gb|EFP10630.1| hypothetical protein CRE_01169 [Caenorhabditis remanei]
Length = 1637
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 262/883 (29%), Positives = 409/883 (46%), Gaps = 170/883 (19%)
Query: 138 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 197
+G V ++ TP+RV + PE + NRVLR + RD LRI F D+D K+
Sbjct: 486 EGYQRVRKIIFTPTRVVYVAPETLMGNRVLRRYDRDGCRVLRIMFRDDDNQKMR------ 539
Query: 198 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAE 257
T+ T T + T + LR+GI + + F +L S+SQ+R+S A+ F +Y ++A+
Sbjct: 540 -----TNKTSTLLETTVHRYLRDGITVAGKNFGYLGSSNSQMRDSGAY-FMEKY--SSAQ 591
Query: 258 IREW----------------------MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDE 295
RE+ +G F I N+ K ARLGQ F+ S+ + V+++
Sbjct: 592 CREYEEKYKLKPPIDFNPKIQSARKNLGRFETIDNIPKMMARLGQCFTQSRLS-GVNLER 650
Query: 296 IEIIPDVKIEIGKT----KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKG 351
I + GK +Y FSDG+G +S FA+ V+ L PS FQ R+ G KG
Sbjct: 651 CTYITTFDLTGGKNVKRDEYTFSDGVGLMSHLFAKMVSEVMDLGKGVPSCFQFRFRGMKG 710
Query: 352 VVAADP-------------------TSSKKLS--LRDSMRKYESEL---TKLDVLAWSKY 387
V+A +P +S LS R S K+ S+ +++++ +S
Sbjct: 711 VIAVEPLLDNIRLWCVENNVPEVSEETSWGLSCVFRPSQIKFISKRHPRDQVEIVKYSAP 770
Query: 388 QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE---ALELMSPGENT 444
P LN+ I++L D++ E + E R++ + + L Q A +++
Sbjct: 771 VPVSLNKPFINIL------DQVSEMQSLECHRRVTNRIEELLDRQMLQFAQQMVDETFCR 824
Query: 445 NILKEL----------LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSM 492
N LKEL G+ +EPF +++ + K +I IP GRSM
Sbjct: 825 NRLKELPRRVDIDYLRTTWGFTLSSEPFFRSLIKASIKFLITRQLRKEQIPIPADLGRSM 884
Query: 493 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 552
+G +DET L YGQ+FVQ++ +L ++ R ++ G V++ KNPC+ G
Sbjct: 885 LGVVDETGRLQYGQIFVQLTK--------NLALKIPPKTAARQVLTGTVLLTKNPCIVAG 936
Query: 553 DVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPP 612
DVR+ +AV++P LHHM D VVFPQ G RPHP+E +GSDLDGD Y + WD +L+ + + P
Sbjct: 937 DVRIYEAVDIPELHHMNDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDKNEDP 996
Query: 613 MDYTPAQSMQLDHDVQIEDV-EEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQL 671
D+T + + +I+ + +++ Y+ DS+G I+N+H +D+ +R C+ L
Sbjct: 997 FDFTSEKQKSSFKEEEIDGLMRDFYVTYLKLDSVGTISNSHLHNSDQYGLNSRV--CMDL 1054
Query: 672 AEKFSIAVDFPKTGVPAE---------------IPPHLYVKEYPDF-MEKPDKPTYESQN 715
A+K AVDF K+G+P E IPP + PD+ M P Y S
Sbjct: 1055 AKKNCQAVDFTKSGIPPEELEKKWRKDDETGEMIPPE-RAERVPDYHMGNDHSPMYVSPR 1113
Query: 716 VIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGN 775
+ GKLFR K I I E S DP M +DG+++++ A Y+ +L +
Sbjct: 1114 LCGKLFREFKAIDDVVK-ISEERDEQIEISIDPTMTIDGYDEYMQSAREDLARYNAQLRS 1172
Query: 776 LMDYYGIK--------TEAEILTGSIMKMSKSFTKR--------RDAEAIGMAVRALRKE 819
+M+ YGIK TE EI +G I+ M + + + I V L K+
Sbjct: 1173 VMENYGIKKINDRYFQTEGEIFSGCIVDMRNRISDKDQDDMSFYNTNQLIETKVSNLFKK 1232
Query: 820 ARAWFKE-------------KSGSDTE----------DDAYAKASAWYHVTYHPDYWGCY 856
R F + ++G++T + KA AWY CY
Sbjct: 1233 YREHFFDEFDGGWQTNTECTRNGNETNILQRQCRAPTNKMMRKAVAWYK--------ACY 1284
Query: 857 NQG--MNRDHFLSFPWCVYDRLVEIKK------DKTSIGNAFP 891
+ + LSF W YD L +K+ D+ +G A P
Sbjct: 1285 EEARVTRENKKLSFAWLAYDVLASVKQQSCLAADEIILGGANP 1327
>gi|341891711|gb|EGT47646.1| CBN-EGO-1 protein [Caenorhabditis brenneri]
Length = 1632
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 258/878 (29%), Positives = 404/878 (46%), Gaps = 163/878 (18%)
Query: 136 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 195
+ +G V ++ TP+RV + PE + NRVLR + D LRI+F D+D K+
Sbjct: 484 MREGYQRVRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMR---- 539
Query: 196 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTA 255
T+ T T + + + L +GI + R F +L S+SQ+R++ A+ F +Y ++
Sbjct: 540 -------TNKTSTLLEKTVNNYLHSGITVAGRNFGYLGSSNSQMRDNGAY-FMEKY--SS 589
Query: 256 AEIREW----------------------MGNFREIRNVAKYAARLGQSFSSSKETLSVHM 293
++ RE+ +G F I N+ K ARLGQ F+ S+ + V++
Sbjct: 590 SQCREYEAIHHVKPPITYNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLS-GVNL 648
Query: 294 DEIEIIPDVKIEIGKT----KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGY 349
D + + GK +Y FSDG+G +S FA+ V+ PS FQ R+ G
Sbjct: 649 DRCTYMTMYDLTGGKNIKRDEYTFSDGVGMMSLRFAQMVSQVMDFGKGVPSCFQFRFRGM 708
Query: 350 KGVVAADPTSS--KKLSLRDSMRKYESELT----------------------KLDVLAWS 385
KGV+A +P +K SL ++ K ++ +++++ +S
Sbjct: 709 KGVIAVEPLLDMIRKWSLEFALEKPSDDVAWGLNCVFRPSQIKFISKRHPRDQVEIVKYS 768
Query: 386 KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENT- 444
P LN+ I++L D++ E + E R++ + + L Q L + T
Sbjct: 769 SPVPVSLNKPFINIL------DQVSEMQSLECHRRVTNRIEELLDRQMLLFAQQMVDETF 822
Query: 445 --NILKEL----------LICGYKPDAEPFL-SMMLQTFRASKLLELRTKTRIFIPN--G 489
N LKEL G+ +EPF S++ + + S +LR K +I IP G
Sbjct: 823 CRNRLKELPRRVDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITKQLR-KEQIPIPQDLG 881
Query: 490 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 549
RSM+G +DET L YGQ+FVQ + +L ++ R ++ G V++ KNPC+
Sbjct: 882 RSMLGVVDETGRLQYGQIFVQYTK--------NLALKLPPKNAARQVLTGTVLLTKNPCI 933
Query: 550 HPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ 609
GDVR+ +AV++P LHHM D VVFPQ G RPHP+E +GSDLDGD Y + WD +L+ +
Sbjct: 934 VAGDVRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDKN 993
Query: 610 DPPMDYTPAQSMQLDHDVQIEDV-EEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPC 668
+ P D+T + + +I+D+ E++ Y+ DS+G I+N+H +D+ AR C
Sbjct: 994 EDPFDFTSEKQKSSFKEEEIDDLMREFYVKYLKLDSVGTISNSHLHNSDQYGLNARV--C 1051
Query: 669 LQLAEKFSIAVDFPKTGVP--------------AEIPPHLYVKEYPDF-MEKPDKPTYES 713
+ LA+K AVDF K+G P E+ P + PD+ M P Y S
Sbjct: 1052 MDLAKKNCQAVDFTKSGQPPDELERKWRKDEETGEMIPPERCERVPDYHMGNDHTPMYVS 1111
Query: 714 QNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKL 773
+ GKLFR K I I E S D ++ +DG+E ++ A Y+ +L
Sbjct: 1112 PRLCGKLFREFKAIDDVLK-ISEERDEQVEISIDENIMMDGYESYMHSARDELSRYNAQL 1170
Query: 774 GNLMDYYGIKTEAEILTGSIMKMSKSFTKR--------RDAEAIGMAVRALRKEARAWFK 825
++M+ YGIKTE E+ +G I+ M + + + I V L K+ R F
Sbjct: 1171 RSMMENYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFYNTNQMIETKVTNLFKKYREHFF 1230
Query: 826 E--------------KSGSDTE----------DDAYAKASAWYHVTYHPDYWGCYNQG-- 859
E + GSD KA AWY CY +
Sbjct: 1231 EEFEGGWEANTESSSRIGSDANILQRQCRAPTQKMMRKAVAWYR--------ACYEEARI 1282
Query: 860 MNRDHFLSFPWCVYDRLVEIKK------DKTSIGNAFP 891
+ LSF W +D + +K+ D +G A P
Sbjct: 1283 TRENKKLSFAWIAFDVIAMVKQTRSLASDDVQMGGANP 1320
>gi|242809058|ref|XP_002485290.1| RNA-dependent RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
gi|218715915|gb|EED15337.1| RNA-dependent RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
Length = 1207
Score = 317 bits (812), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 254/841 (30%), Positives = 392/841 (46%), Gaps = 140/841 (16%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNF--YRLVDPYRAPVSISCIEHALDKLYHLK--- 105
P+ + F++ +LV NG + + S F R + + P+ ++ I L + H
Sbjct: 314 VFPFAVQFQLRMLVSNGELPPEKVISLFPYVRTLLARKRPLVVAKILKGLPRRLHHPDPH 373
Query: 106 --------ECCYEPSRWLTD-QYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFC 156
E E + + + Q +Y+ +P P L + +HR+ VTP+ +Y
Sbjct: 374 ADSADVSLEAIIETLKEIEEMQALEYV----QPGQPGY-LHHNQMEIHRLSVTPTGIYLD 428
Query: 157 GPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYT-RIL 215
GP + NRVLR +R D F+R+ FI+E D + D+S S D RI+ R
Sbjct: 429 GPNVEAENRVLRKYRHQSDYFIRVRFIEESGDPM-MYDIS----SNLD----RIFKDRFG 479
Query: 216 STLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG-----LTAAEIREWMGNFREIRN 270
LR+G++I DR + FL FS S LR S W A + +T + +G+F IR+
Sbjct: 480 EVLRDGVIIADRHYRFLGFSHSSLRSRSCWFMAEFHDSEGQLITVNSLISKLGDFSHIRS 539
Query: 271 VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS 330
AK+AARLGQ+FS + ++SV D ++ I DV+ + VFSDG G +S E ++
Sbjct: 540 PAKFAARLGQTFSDTLTSISVDRDMVKRIDDVE----RNGRVFSDGCGTISKEVLWRI-- 593
Query: 331 KCGLKDNP------PSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELTKLDVLA 383
+D P P+ FQ+R G KG+++ DP + LRDSM K+ +E +
Sbjct: 594 ---YRDYPRNAAVRPTVFQVRISGAKGMLSLDPRLKGPTICLRDSMIKFRAEADHNIEIC 650
Query: 384 WSKYQ--PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPG 441
S PC+LN LI +L LG+ ++F + QRE V+ L + P +A L+
Sbjct: 651 GSGIHSLPCYLNAPLIKILEDLGVARDLFLELQREEVQNLRLAIRSPRQAASFLDQAHIT 710
Query: 442 ENTNI---LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 498
++T + + L G + + FL ++ KL +L+ + RI +P ++ G +DE
Sbjct: 711 KSTRLSWLITVLQSMGLNYNQDKFLKRAVELVILMKLRDLKYRARILVPEAVTLYGIMDE 770
Query: 499 TRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLK 558
T L G++FV I + R+ +VQ V++ ++P HPGDV+++
Sbjct: 771 TGYLQEGEIFVPI--------------LNEVTKRRNILVQNKVLITRSPAFHPGDVQMVN 816
Query: 559 AVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDY 615
AVNVP L + +CVVF QKG R P++ SG DLDGDI+ + +D + P DY
Sbjct: 817 AVNVPEASPLRKLHNCVVFSQKGERDLPSQLSGGDLDGDIFNIIYDPRFRLQRLARPADY 876
Query: 616 TPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKF 675
A LD VQ+ED++++F ++ D LG IA H + AD++ CL LA
Sbjct: 877 PRAPGTVLDRPVQMEDIQKFFIEFMQQDQLGRIATTHKILADQQAAGTFDPNCLTLAHLH 936
Query: 676 SIAVDFPKTGVPAEI------PPHLYVKEYPDFME------------------------- 704
S AVDF KTG P +I PP+ PDFM
Sbjct: 937 STAVDFSKTGTPVDIKQIPKYPPY-----RPDFMAPGPRVRVAESIEVLDDGREHIWDDG 991
Query: 705 ----------KPDKPTYESQNVIGKLFRAVKDI---------APHTSCIRLFTKEV---- 741
+P Y+SQ V+G L+R + + +P+ + +K V
Sbjct: 992 GSIIDDDDDVRPPLRYYKSQRVLGALYRTINERDFIRELEWDSPNHQQQKQSSKSVNVLA 1051
Query: 742 ARRSYDPDMEVDGFE-DH-IDDAIYHKGNYDYKLGNLMDYYG------IKTEAEILTGSI 793
A Y E GF DH + DA Y + Y+ + +LM Y TE E+ G+I
Sbjct: 1052 AVWEY-VKCETAGFLWDHCVKDAYYIRDVYEDSIQDLMYQYSDAPWKTCLTEVEVFIGNI 1110
Query: 794 M 794
M
Sbjct: 1111 M 1111
>gi|212537491|ref|XP_002148901.1| RNA-dependent RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
gi|210068643|gb|EEA22734.1| RNA-dependent RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
Length = 1207
Score = 316 bits (809), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 200/591 (33%), Positives = 304/591 (51%), Gaps = 70/591 (11%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIH---STDLSPRG 199
+HR+ VTP+ +Y GP + NRVLR +R D F+R+ FI+E D + S++L P
Sbjct: 417 IHRLSVTPTGLYLDGPNVEAENRVLRKYRNQSDQFIRVRFIEESGDPLMYDISSNLDP-- 474
Query: 200 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG------L 253
I+ R LR+G++I DR + FL FS S LR S W A + +
Sbjct: 475 ----------IFDRFREVLRDGVIIADRHYRFLGFSHSSLRSRSCWFMAEFHDSVTGEFI 524
Query: 254 TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 313
T ++ +G+F I+ +K+AARLGQ+FS + ++SV D ++ I DV+ + VF
Sbjct: 525 TVNKLISKLGDFDHIKAPSKFAARLGQTFSDTLTSISVDKDMVKRIDDVE----RNGRVF 580
Query: 314 SDGIGKVSAEFARKVASKCGLKDNP------PSAFQIRYGGYKGVVAADPT-SSKKLSLR 366
SDG G +S E ++ +D P P+ FQ+R G KG+++ DPT + LR
Sbjct: 581 SDGCGTISKEILWRI-----YRDYPRNAAVRPTVFQVRISGAKGMLSLDPTLKGPTICLR 635
Query: 367 DSMRKYESELTKLDVLAWSKYQ--PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 424
DSM K+ +E + S PC+LN LI +L LG+ ++F + QRE V L
Sbjct: 636 DSMIKFRAEADNNIEICGSGIHSLPCYLNAPLIKILEDLGVPRDLFLELQREEVESLRQT 695
Query: 425 LTDPLKAQEALELMSPGENTNI---LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTK 481
+ P A L+ ++T + + L G + + FL ++ KL +L+ K
Sbjct: 696 VRSPQHAAVFLDQAHISKSTRLSWLITLLQSMGVNYNQDGFLKRAVELVILMKLRDLKYK 755
Query: 482 TRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLV 541
RI +P+G ++ G +DET L G++FV I + R+ +VQ V
Sbjct: 756 ARILVPDGVTLYGIMDETGYLKEGEIFVPI--------------LNEETKRRDILVQDDV 801
Query: 542 VVAKNPCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 598
++ ++P HPGDV++ AVNVP L + +CVVF QKG R P++ SG DLDGDI+ +
Sbjct: 802 LITRSPAFHPGDVQLANAVNVPEDSPLRKLHNCVVFSQKGTRDLPSQLSGGDLDGDIFNI 861
Query: 599 CWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADR 658
+D + P DY +L VQI+D++++F ++ D LG IA H + AD+
Sbjct: 862 IYDPRFRLRRLAKPADYPRVPGTELGRPVQIDDIQDFFVTFMQQDQLGRIATTHKILADQ 921
Query: 659 EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEI------PPHLYVKEYPDFM 703
+ + CL LA+ S AVDF KTG P +I PP+ PDFM
Sbjct: 922 QVKGTFDPNCLTLAQLHSTAVDFSKTGTPVDIKMIPRYPPY-----RPDFM 967
>gi|115458854|ref|NP_001053027.1| Os04g0465700 [Oryza sativa Japonica Group]
gi|113564598|dbj|BAF14941.1| Os04g0465700, partial [Oryza sativa Japonica Group]
Length = 377
Score = 315 bits (808), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 172/353 (48%), Positives = 222/353 (62%), Gaps = 21/353 (5%)
Query: 537 VQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIY 596
V G V + KNPCLHPGD+RVL+A+ P L MVDC+VFPQ+G RPHPNECSG DLDGD+Y
Sbjct: 12 VVGKVAITKNPCLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLY 71
Query: 597 FVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFA 656
F+ WDD+LIP + D PMDYT + +DH V +E+++++F +Y++NDSLG I+ AH + A
Sbjct: 72 FITWDDKLIPEKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHA 131
Query: 657 DREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNV 716
DR P KARS CLQLA S+AVDF KTG PAE+P L +EYPDFME+ +KP Y S V
Sbjct: 132 DRSPLKARSPECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGV 191
Query: 717 IGKLFRAVKDIAPHTSCIRLFTKEVARRS--YDPDMEVDGFEDHIDDAIYHKGNYDYKLG 774
+GKL+R+ + + A+ S YDPD+EV G ++ + A + Y+ KL
Sbjct: 192 LGKLYRSAMGHMEKSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLT 251
Query: 775 NLMDYYGIKTEAEILTGSIMKMSKSFTKRRD-------AEAIGMAVRALRKEARAWFKEK 827
LM+YY + E EILTG+I +K +RD + I AV AL +EAR W
Sbjct: 252 TLMNYYRAELEDEILTGNI--RNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWLL-- 307
Query: 828 SGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIK 880
S E+DA ASAWY VTYHPD +G F SFPW D L+ IK
Sbjct: 308 -SSRKEEDASRMASAWYRVTYHPD----RRRG---KRFWSFPWIACDNLLAIK 352
>gi|268561564|ref|XP_002646475.1| Hypothetical protein CBG19448 [Caenorhabditis briggsae]
Length = 1606
Score = 315 bits (807), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 279/957 (29%), Positives = 438/957 (45%), Gaps = 170/957 (17%)
Query: 54 YEILFKINLLVQNGCVAGP--LLDSNFYR--LVDPYRA-PVSISCIEHALDKLYHLKEC- 107
+ I + I L+ G V LLD +R L +R V E AL+ L HL +
Sbjct: 369 FSITYLIECLISRGAVVKDQILLDEQHWRSFLGIIWRYYKVDDKLCESALEDLIHLVDGR 428
Query: 108 --------CYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPE 159
C++ Q R+ M + S I G V +V TP+RV + PE
Sbjct: 429 KRIGSIIKCFDK----ICQKRQRMQLINCLSESEIR--SGFQRVRKVIFTPTRVIYISPE 482
Query: 160 INVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLR 219
+ NRVLR F +D +RI+F D++ +++ + D ++T + L
Sbjct: 483 TIMGNRVLRKFDKDGTRVIRITFRDDNNNQMRANDTG----DLLEMTANKF-------LG 531
Query: 220 NGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTA---------------------AEI 258
GI I +R+F FL S+SQ+R++ A+ F ++Y + E+
Sbjct: 532 EGIRIANREFGFLGCSNSQMRDNGAY-FMAKYSQSQLEKFLRTRPNEAQLKAFKPRIMEV 590
Query: 259 REWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKT----KYVFS 314
R+ +G F ++ N+ K AR+GQ F+ S+ T V ++ + I E GK Y FS
Sbjct: 591 RKHLGKFDKLENIPKLMARMGQCFTQSRLT-GVELNRSDYIRIPDFEGGKNLAGKPYTFS 649
Query: 315 DGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP----------------- 357
DG+G +S FA+KVA + ++ PS+FQIR+ G KG++A DP
Sbjct: 650 DGVGIMSYRFAQKVAHAMQMGNSVPSSFQIRFRGMKGMIAIDPYMDLIHQWNVSYDIPYQ 709
Query: 358 --TSSKKLSLRDSMRKYESELTKLDVLAWSKYQP---CFLNRQLISLLSTLGIWDEIFEK 412
K + R S K+E++ D + KY LN+ I++L D++ E
Sbjct: 710 VPNLELKCAFRPSQIKFEAKSLPGDQIEMVKYSAPVMVALNKPFINIL------DQVSEM 763
Query: 413 KQREAVRQLDAILTDPLKAQE---ALELMSPGENTNILKELL----------ICGYKPDA 459
+ E +++ + + + Q A ++ N LKE + G+ +
Sbjct: 764 QSLECHKRVTGRVEELMDRQILSFARQMNDETYCRNRLKEFPRRIDIDFLRPMWGFTLSS 823
Query: 460 EPFL-SMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISGAGY 516
EPF S++ + + S +LR K +I IP GRSM+G +DET L YGQ+FVQ +
Sbjct: 824 EPFFRSLIKASIKFSITKQLR-KEQIQIPKELGRSMLGVVDETGQLQYGQIFVQYTQNAA 882
Query: 517 RQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQ 576
++L + ++ IV G V+V KNPC+ GDVRV +AV++P LHHM D VVFPQ
Sbjct: 883 KKLPMRGPNMTVPDAK---IVTGTVLVTKNPCIVTGDVRVFEAVDIPELHHMCDVVVFPQ 939
Query: 577 KGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDV-QIEDV-EE 634
G RPHP+E +GSDLDGD Y + WD +L+ + + P D++ + + D QI+D+ +
Sbjct: 940 HGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDRNEDPFDFSVEKKDPVPFDFDQIDDLMRD 999
Query: 635 YFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVP------- 687
++ Y+ DS+G I+N H +D+ S C+ LA+K S AVDF K+G P
Sbjct: 1000 FYVKYLKLDSVGTISNNHLHNSDQ--YGLTSTVCMNLAKKNSQAVDFTKSGDPPAPLTRE 1057
Query: 688 --------AEIPPHLYVKEYPDF-MEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFT 738
IPP + PD+ M P Y S + G+LFR + I + I++
Sbjct: 1058 WGKDPETGENIPPE-GAERIPDYHMANERVPVYVSPRLCGRLFREFQAI---DNVIKISE 1113
Query: 739 K--EVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKM 796
+ E D + + G+E +++ A NY+ +L +M+ YGI+TE EI++ I+ M
Sbjct: 1114 ERDEQFEVQIDETLMIQGYEAYMEGARKDLANYNGQLRAIMETYGIRTEGEIMSDCILDM 1173
Query: 797 SKSFTKRRDAEAIGMAVRALRKEARA----------WFKEKSG--------SDTEDDA-- 836
+ R + + E R +FKE G ++ D
Sbjct: 1174 RNRISDRDQDDKMSFYNTNQMIETRTTALFCRFRENFFKEFHGFQAACTEIQNSNDSTNP 1233
Query: 837 ------------YAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKK 881
KA AWY Y + Q LSF W V+D L ++K+
Sbjct: 1234 LNFRCDGPSVPMLQKAVAWYRACYE------FAQSSRETRKLSFAWIVFDVLAKVKE 1284
>gi|341891713|gb|EGT47648.1| hypothetical protein CAEBREN_06166 [Caenorhabditis brenneri]
Length = 1640
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 281/977 (28%), Positives = 436/977 (44%), Gaps = 162/977 (16%)
Query: 54 YEILFKINLLVQNGCVAGP--LLDS----NFYRLVDPYRAPVSISCIEHALDKLYHL--- 104
+ I + I L+ G V LL+ NF +++ Y C E AL+ L HL
Sbjct: 391 FAITYLIECLLSRGAVVKDQLLLNEIHWENFLKIIILYYKKNDKLC-EAALEDLIHLIDG 449
Query: 105 --KECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINV 162
+ C Q R+ M + S I DG V +V TP+RV + PE +
Sbjct: 450 RKRIGCIMKCLDKICQKRERMQLINGLSEKEIH--DGFQIVRKVVFTPTRVIYVAPEAIM 507
Query: 163 SNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGI 222
NRVLR F +D LRI+F D++ G T+ T + R G+
Sbjct: 508 GNRVLRRFDKDGTKVLRITFRDDN-----------NGKMRTNTTEELLEKTANKFFREGV 556
Query: 223 LIGDRKFEFLAFSSSQLRESSAWMF-----------------ASR-----YGLTAAEIRE 260
+ +R F FL S+SQ+R+S A+ A+R Y E+R
Sbjct: 557 RVANRDFGFLGCSNSQMRDSGAYFMLKATPSQLERFYRKNPRATREQLLNYKPLIDEVRL 616
Query: 261 WMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK----YVFSDG 316
+G F E+ NV K AR+GQ F+ S+ T V ++ E GK Y FSDG
Sbjct: 617 NLGKFSEVENVPKMIARMGQCFTQSRLT-GVALERKNYCKIFDYEGGKNSKQATYTFSDG 675
Query: 317 IGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK--------------- 361
+G +S FA+ +A + PS FQIR+ G KGV+A +P
Sbjct: 676 VGMMSCRFAKIMAQSMNYDRSVPSCFQIRFRGNKGVIAMEPQLDDLRNWAIRHALEEIIP 735
Query: 362 --KLSLRDSMRKYESELTKLDVLAWSKYQ---PCFLNRQLISLLSTLGIWDEIFEKKQRE 416
++ R S K++++ + D + K P LN+ LI++L + + K+
Sbjct: 736 EINVAFRPSQIKFQAKHIEGDQIEMVKPAGPVPVSLNKPLINILDQVSEMQGVVCHKR-- 793
Query: 417 AVRQLDAILTDPLKAQEALELMSPGENTNILKEL----------LICGYKPDAEPFLSMM 466
V +++ ++ +++ A ++ N LKE G+ EPF +
Sbjct: 794 MVSRIEELMDRQVQSF-AKQMNDETYCRNRLKEFPRRVDIDYLRTTWGFTLSREPFFRSL 852
Query: 467 LQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESS 524
++ + + K +I IP GR++ G +DET L YGQVFVQ S L+
Sbjct: 853 IKAAIKFSITKQLRKEQIQIPKELGRTLFGVVDETGRLQYGQVFVQYSS---NILNKHPV 909
Query: 525 LFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPN 584
+ + +V G ++++KNPC+ PGDVR+ +AV++P LHHM D VVFPQ G RPHP+
Sbjct: 910 RLADQSVQNGVVVTGKILISKNPCIVPGDVRIFEAVDIPELHHMCDVVVFPQAGPRPHPD 969
Query: 585 ECSGSDLDGDIYFVCWDDELIPPQQDPPMDYT-PAQSMQLDHDVQIEDVEEYFTNYIVND 643
E +GSDLDGD Y V WD +++ +P D++ Q ++ D + + E++ Y+ D
Sbjct: 970 EMAGSDLDGDEYSVIWDPQMLLEWNEPAFDFSVEKQRIEWDPNEVDNLMREFYVQYLKLD 1029
Query: 644 SLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPA--------------E 689
S+G I+NAH +D+ S C+ LA+K S AVDF K+G+P E
Sbjct: 1030 SVGQISNAHLHNSDQ--YGLMSTVCMNLAKKNSQAVDFTKSGIPPADMTRKWEKDPITDE 1087
Query: 690 IPPHLYVKEYPDF-MEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTK--EVARRSY 746
+ P + PDF M P Y S + G+LFR + I + I++ + E+
Sbjct: 1088 MVPPENPERIPDFHMGNERNPQYVSPRLCGRLFREFQAI---DNVIKISEEKDELYDIEI 1144
Query: 747 DPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDA 806
D D+ + G+E + +A NY+ +L ++M+ YGI TE EI++G I++M + +D
Sbjct: 1145 DEDIMIYGYERFMVEARTELANYNGQLRSIMETYGIATEGEIMSGCIIEMRNRISD-KDQ 1203
Query: 807 EAIGMAVRALRKEARAW-----FKEK---------------SGSDTEDD---AY------ 837
+ + L E R F+EK +D + AY
Sbjct: 1204 DDMSFFNTNLMIETRVTTLICRFREKFFEPFGGYQSCCSIIENADENNSTCLAYRCRSAT 1263
Query: 838 ----AKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIK------KDKTSIG 887
KA AWY Y + Q LSF W VYD + +++ ++ IG
Sbjct: 1264 NSMMQKAVAWYRACYE------FAQSNRETRKLSFAWIVYDVIAKVREAAMLSQENLQIG 1317
Query: 888 NAFPA---LEQQFRQGL 901
A P LE+ +Q L
Sbjct: 1318 GANPMYTFLEKHRKQYL 1334
>gi|341880571|gb|EGT36506.1| hypothetical protein CAEBREN_02888 [Caenorhabditis brenneri]
Length = 1640
Score = 313 bits (803), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 266/928 (28%), Positives = 411/928 (44%), Gaps = 163/928 (17%)
Query: 91 ISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTP 150
I CI LDK+ C Q R+ M + S I DG V +V TP
Sbjct: 453 IGCITKCLDKI------C---------QKRERMQLINGLSEKEIH--DGFQIVRKVVFTP 495
Query: 151 SRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRI 210
+RV + PE + NRVLR F +D LRI+F D++ K+ T+ T +
Sbjct: 496 TRVIYVAPEAIMGNRVLRRFDKDGTKVLRITFRDDNNSKMR-----------TNTTEELL 544
Query: 211 YTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS--------------------- 249
R G+ + +R F FL S+SQ+R+S A+
Sbjct: 545 EKTANKFFREGVRVANRDFGFLGCSNSQMRDSGAYFMLKATPGQLERFYRKYPRHTREQL 604
Query: 250 -RYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK 308
Y E+R +G F E+ NV K AR+GQ F+ S+ T V ++ E GK
Sbjct: 605 LSYKPWIDEVRLNLGKFSEVENVPKMIARMGQCFTQSRLT-GVALERKNYCKIFDYEGGK 663
Query: 309 TK----YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK--- 361
Y FSDG+G +S FA+ +A + PS FQIR+ G KGV+A +P
Sbjct: 664 NSKKAAYTFSDGVGMMSCRFAKIMAQSMNYDRSVPSCFQIRFRGNKGVIAMEPQLDDLRN 723
Query: 362 --------------KLSLRDSMRKYESELTKLDVLAWSKYQ---PCFLNRQLISLLSTLG 404
K++ R S K++++ + D + K P LN+ LI++L +
Sbjct: 724 WSIRHQLDDLIPEIKVAFRPSQIKFQAKHIEGDQIEMVKPAGPVPVSLNKPLINILDQVS 783
Query: 405 IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKEL----------LICG 454
+ K+ V +++ ++ +++ A ++ N LKE G
Sbjct: 784 EMQGVLCHKR--MVSRIEELMDRQVQSF-AKQMNDETYCRNRLKEFPRRVDIDYLRTTWG 840
Query: 455 YKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQIS 512
+ EPF +++ + + K +I IP GR++ G +DET L YGQVFVQ S
Sbjct: 841 FTLSREPFFRSLIKAAIKFSITKQLRKEQIPIPKELGRTLFGVVDETGRLQYGQVFVQYS 900
Query: 513 GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCV 572
L+ + + +V G ++++KNPC+ PGDVR+ +AV++P LHHM D V
Sbjct: 901 S---NILNKHPVRLADQSVQNGVVVTGPILISKNPCIVPGDVRIFEAVDIPELHHMCDVV 957
Query: 573 VFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYT-PAQSMQLDHDVQIED 631
VFPQ G RPHP+E +GSDLDGD Y V WD +++ +P D++ Q ++ D +
Sbjct: 958 VFPQSGPRPHPDEMAGSDLDGDEYSVIWDPQMLLEWNEPAFDFSVEKQRIEWDPNEVDNL 1017
Query: 632 VEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPA--- 688
+ E++ Y+ DS+G I+NAH +D+ S C+ LA+K S AVDF K+G+P
Sbjct: 1018 MREFYVQYLKLDSVGQISNAHLHNSDQ--YGLMSTVCMNLAKKNSQAVDFTKSGIPPAEM 1075
Query: 689 -----------EIPPHLYVKEYPDF-MEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRL 736
E+ P + PDF M P Y S + G+LFR + I + I++
Sbjct: 1076 TRDWRRDPITDEMVPPENPERIPDFHMGNERNPQYVSPRLCGRLFREFQAI---DNVIKI 1132
Query: 737 FTK--EVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIM 794
+ E+ D D+ + G+E + +A NY+ +L ++M+ YGI TE EI++G I+
Sbjct: 1133 SEEKDELYDIEIDEDIMIYGYERFMVEARTELANYNGQLRSIMETYGIATEGEIMSGCII 1192
Query: 795 KMSKSFTKRRDAE--------AIGMAVRALRKEARAWFKEKSGS---------------- 830
+M + + + I V L R F E+ G
Sbjct: 1193 EMRNRISDKDQDDMSFFNTNLMIETRVTTLICRFREKFFEQFGGYQSCCSIIENADENNS 1252
Query: 831 --------DTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIK-- 880
+ KA AWY Y + Q LSF W VYD + +++
Sbjct: 1253 SCLAYRCRSATNSMMQKAVAWYRACYE------FAQSNRETRKLSFAWIVYDVIAKVREA 1306
Query: 881 ----KDKTSIGNAFPA---LEQQFRQGL 901
++ IG A P LE+ +Q L
Sbjct: 1307 AMLSQENLQIGGANPMYTFLEKHRKQYL 1334
>gi|241633126|ref|XP_002410398.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215503415|gb|EEC12909.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 529
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 208/543 (38%), Positives = 290/543 (53%), Gaps = 31/543 (5%)
Query: 258 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMD--EIEIIPDV---KIEIGKTKYV 312
IR WMG+F I +VAK AR+GQ FSS++E++ V +D +E PD+ K ++
Sbjct: 1 IRRWMGDFSNIPSVAKKMARMGQCFSSTEESVKVPLDGKAVEDRPDIVGGKHPRSGRPFI 60
Query: 313 FSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRK 371
FSDGIG +S KV K + PSA QIRY GYKG++ +P KL LR+SMRK
Sbjct: 61 FSDGIGMISQPLLEKVCKKLEMA-QIPSAIQIRYAGYKGMLCVNPLLPGDKLVLRESMRK 119
Query: 372 YE-SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL-DAILTDPL 429
+ S L+V+ S +P LNR LI++L LG+ +F Q++ V DA++ +
Sbjct: 120 FTCSSSDSLEVIKVSAPRPVCLNRPLITILEQLGVPSRVFLCLQQKMVLMFADALVCEST 179
Query: 430 KAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP-- 487
Q +S L+ +C + PF+ +L T S + L TK+RI +P
Sbjct: 180 ALQVLCTYLSGALPFRRLRMHGLCLTR---NPFVRSLLYTVYKSTMDGLHTKSRIAVPLN 236
Query: 488 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNP 547
GR+M+G LDET TL YGQVFVQ + G G+ +R G V+V K P
Sbjct: 237 KGRNMLGVLDETDTLKYGQVFVQYTALG-PDTEGQDDGLPKTRI---IFCTGAVLVTKCP 292
Query: 548 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 607
CLHPGDVR AV+VPALHH+ DCVVFP +G RPHPNE +GSDLDGD Y V W +L+ P
Sbjct: 293 CLHPGDVRKFTAVDVPALHHVKDCVVFPARGPRPHPNEMAGSDLDGDEYVVIWKKDLLFP 352
Query: 608 QQDPPMDYTPAQSMQLDHDVQ-IEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSE 666
+ S D + +E + ++ NYI ND++GI++NAH +AD S+
Sbjct: 353 GPNRKAMVFSDHSAPCDANKSLLEGMIQFVCNYIKNDNVGIMSNAHLAWADSLEDGIFSK 412
Query: 667 PCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEK-PDKPTYESQNVIGKLFRAVK 725
CLQ+A K S +DF KTG + + +YPDFMEK K TY S+ V+G L+R
Sbjct: 413 QCLQIARKISTCLDFAKTGETSYLNKDEKPIQYPDFMEKGSSKDTYRSKRVLGHLYRL-- 470
Query: 726 DIAPHTSCIRLFTKEVARRSYDPDMEVD-----GFEDHIDDAIYHKGNYDYKLGNLMDYY 780
H S + + D D + G+E++ A + NY ++ + Y
Sbjct: 471 ----HRSLEAVVGTDFQTCVEDGDADCSLFALPGWEEYAAAAESVRANYASQMARIRRQY 526
Query: 781 GIK 783
GIK
Sbjct: 527 GIK 529
>gi|261191013|ref|XP_002621915.1| RNA dependent RNA polymerase [Ajellomyces dermatitidis SLH14081]
gi|239590959|gb|EEQ73540.1| RNA dependent RNA polymerase [Ajellomyces dermatitidis SLH14081]
Length = 1239
Score = 312 bits (800), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 255/837 (30%), Positives = 389/837 (46%), Gaps = 120/837 (14%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYH---LKECC 108
LPY++ F++ LV NG ++ P +F V ++ + AL +L
Sbjct: 321 LPYQVRFQLQKLVWNGDIS-PAKAISFASRVQAALVTENLDVVVQALMRLRQNIKWPSPD 379
Query: 109 YEPSR----WLTDQYRKYMTS---RSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEIN 161
EPS L +R + + K +S + V +HRVQVTP +Y GP +
Sbjct: 380 VEPSEVDVSALVATFRNALEAAVREHKMASTNRHTNPNHVSIHRVQVTPCGIYLDGPYME 439
Query: 162 VSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNG 221
NRVLR + +D+FLR+ F+DE D + PR S D+ R L+NG
Sbjct: 440 SKNRVLRRYANHVDHFLRVEFMDESGDPVR---YDPRAS--IDLI---FQQRFKGVLKNG 491
Query: 222 ILIGDRKFEFLAFSSSQLRESSAWMFASRYG----LTAAEIREWMGNFREIRNVAKYAAR 277
I I RKFEFL FS S LR + W A Y A I + +G F I + AK AAR
Sbjct: 492 INIAGRKFEFLGFSHSSLRSQTCWFVAPFYADGILYNATTIIQNLGRFDHINSPAKQAAR 551
Query: 278 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 337
+GQ+FS + ++ + + I ++ DVK + VFSDG+G +S + L+
Sbjct: 552 IGQTFSETLTSIPISEEIISVVQDVK----RNDRVFSDGVGTISPSVMYMIWKDYSLRTM 607
Query: 338 -PPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELT----KLDVLAWS-KYQPC 390
P+ FQIR G KG+V+ D + L LR SM K+ + +++ + P
Sbjct: 608 VKPTVFQIRIAGAKGMVSLDSRNKGESLVLRPSMIKFPVTTSFNAYNIEICGSGIRSLPF 667
Query: 391 FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKE- 449
FLN QLI +L LG+ +F K QR+ + +L A T +A + LE +TNI K
Sbjct: 668 FLNAQLIKILEDLGVDGNVFLKLQRDEILRLRATATSTTQAAKFLE------DTNIAKSV 721
Query: 450 --------LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRT 501
L G + + FL +++ KL +L+ + RI +P ++ G +DET
Sbjct: 722 GLPWLISILEALGLRHSDDEFLRRVMELVVLIKLRDLKYRARIRVPKAVTLFGIMDETGY 781
Query: 502 LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 561
L G++F +SL S + R+ ++ VVV ++P +HPGDV++ KAV+
Sbjct: 782 LKEGEIFC-------------TSL--SDKGRREVLLNPKVVVTRSPAMHPGDVQIAKAVD 826
Query: 562 VPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPA 618
VPA L + +C+ F Q G R P+ SG DLDGD+Y V + D LIP PP Y
Sbjct: 827 VPADSPLRQLHNCIAFSQHGDRDLPSMLSGGDLDGDLYNVIFKDTLIPRVISPPAQYPRV 886
Query: 619 QSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIA 678
Q LD V +D+ ++F ++ D LG IA H AD++ CL LAE S A
Sbjct: 887 QEKVLDRPVVRDDIIDFFVTFMQQDQLGRIATVHQTIADQKALGTFDPQCLLLAELHSTA 946
Query: 679 VDFPKTGVP---AEIP-------------PHLYVKEYPDFMEKPDKPT------------ 710
VDF K+GVP A IP P + + E +E+ D+ T
Sbjct: 947 VDFSKSGVPVDLARIPKFPRYRPDFQAPGPRVRIAESLSLLEEHDQMTVLDDEEEEEDER 1006
Query: 711 -----YESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDM----------EVDGF 755
Y+S+ ++GKL+RA+ ++ + +A + P + E GF
Sbjct: 1007 PTARYYKSEKILGKLYRAIDEVEFLQHRQNAIERSMAMAA--PSVLKGVWAFVQSETVGF 1064
Query: 756 --EDHIDDAIYHKGNYDYKLGNLMDYYGIK------TEAEILTGSIMKMSKSFTKRR 804
+ H+++A+ + Y+ L +M Y TE E+ G+I+ + T R+
Sbjct: 1065 LWDHHVENALEIRQIYEDNLLEIMARYSSTPWKSSITEYEVFVGTILGHGQKITHRQ 1121
>gi|308476834|ref|XP_003100632.1| CRE-RRF-1 protein [Caenorhabditis remanei]
gi|308264650|gb|EFP08603.1| CRE-RRF-1 protein [Caenorhabditis remanei]
Length = 1680
Score = 312 bits (800), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 272/958 (28%), Positives = 438/958 (45%), Gaps = 169/958 (17%)
Query: 54 YEILFKINLLVQNGCVAGP--LLD----SNFYRLVDPYRAPVSISCIEHALDKLYHLKEC 107
+ I + I L+ G V LLD SNF ++ Y C E AL+ L H+ +
Sbjct: 418 FAITYLIECLISRGAVVKDQILLDEGQWSNFLEIIIHYYKIDDKLC-EAALEDLIHMVDG 476
Query: 108 ---------CYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGP 158
C++ Q R+ M + + I DG V ++ TP+RV + P
Sbjct: 477 RKRIGSILKCFDR----ICQKRQQMNLVNGLTENEIR--DGFQRVRKIVFTPTRVIYIAP 530
Query: 159 EINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTL 218
E + NRVLR F +D +R++F D+ ++ + S G D T + ++
Sbjct: 531 ETIMGNRVLRRFDKDGTRVIRVTFRDDSNGRLRA---STTGEELIDKTAMKFFS------ 581
Query: 219 RNGILIGDRKFEFLAFSSSQLRESSAWM-----FASRYGLTAA--------------EIR 259
G+ + +R + FL S+SQ+R++ A+ F R L E+R
Sbjct: 582 -EGVKVANRDYGFLGCSNSQMRDNGAYFMEKSTFGQRQRLLKNNPNANLIGFQPKILEVR 640
Query: 260 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK------YVF 313
+G F I NV K ARLGQ F+ S+ T V ++ + E KTK Y +
Sbjct: 641 RHLGRFETIENVPKMMARLGQCFTQSRLT-GVELERSDYCTTFDYEGAKTKPIVGKCYTY 699
Query: 314 SDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK------------ 361
SDG+G +S FA+++A + PS QIR+ G KGV+A DP +
Sbjct: 700 SDGVGIMSYGFAQRLARSMNFGISVPSCLQIRFRGMKGVIAIDPFYDEVSEWAQANGIQS 759
Query: 362 --------KLSLRDSMRKYESELTKLDVLAWSKYQ-PCF--LNRQLISLLSTL------- 403
K R S K+ ++ D + K+ P LN+ I++L +
Sbjct: 760 YDVPNLDLKCQFRPSQIKFPAKSIPGDQIEMVKFSSPVLVALNKPFINILDQVSEMQSIE 819
Query: 404 ------GIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKP 457
G +E+ +++ +Q++ D L + L+ + + LK + G+
Sbjct: 820 CHRRVTGRIEELMDRQIVSFAKQMN----DELYCRNKLKEFPRRIDIDFLKRMW--GFTL 873
Query: 458 DAEPFL-SMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISGA 514
EPF S++ + + S +LR K +I IP GRSM+G +DET L YGQ+FVQ +
Sbjct: 874 CNEPFFRSLIKASIKFSITKQLR-KEQIQIPKELGRSMLGIVDETGRLQYGQIFVQYTRN 932
Query: 515 GYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVF 574
+L S++ + + +V G V++ KNPC+ GDVR+ +AV++P LHH+ D VVF
Sbjct: 933 SNEKLPPRSNM-QHMKVQGSQVVTGTVLLTKNPCIVTGDVRIFEAVDIPELHHLCDVVVF 991
Query: 575 PQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYT-PAQSMQLDHDVQIEDVE 633
PQ G RPHP+E +GSDLDGD Y V WD +L+ + + P D+T + M D ++ + +
Sbjct: 992 PQHGPRPHPDEMAGSDLDGDEYSVIWDQQLLLDKNEAPFDFTVEKKEMPYDREMIDQLMH 1051
Query: 634 EYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVP------ 687
E++ Y+ DS+G I+N H +D+ +R C+ LA+K AVDF K+G P
Sbjct: 1052 EFYVKYLKLDSVGTISNNHLHNSDQYGLNSRV--CMDLAKKNCQAVDFTKSGEPPAPLTK 1109
Query: 688 ---------AEIPPHLYVKEYPDFMEKPDK-PTYESQNVIGKLFR---AVKDIAPHTSCI 734
+PP L + PD+ D P Y + + G+LFR A+ D+ I
Sbjct: 1110 KWARDPETGEAVPPEL-AERVPDYHVGNDNAPVYVTPRLCGRLFREFQAIDDVIR----I 1164
Query: 735 RLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIM 794
+E D ++++G+E+++ A NY+ +L ++M+ YGI++E EI++G I+
Sbjct: 1165 SEEREEQYEIEIDESIKMEGYENYLTCAEKELANYNGQLRSIMETYGIQSEGEIMSGCIL 1224
Query: 795 KMSKSFTKR--------RDAEAIGMAVRALRKEARAWFKEKSGS---------DTEDDAY 837
+M + + + I + +L E R F E+ G +T D
Sbjct: 1225 EMRNRISDKDQDDMSFFNTNQMIETRMTSLVCEFRKRFFEEFGGYLAVCTQLPNTFDANN 1284
Query: 838 A--------------KASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKK 881
+ KA+AWY Y + Q LSF W YD L ++K+
Sbjct: 1285 SLTYRCEMPSELMMQKATAWYRACYK------FAQKSRETRKLSFGWIAYDVLAKVKE 1336
>gi|239613137|gb|EEQ90124.1| RNA-dependent RNA polymerase [Ajellomyces dermatitidis ER-3]
Length = 1154
Score = 312 bits (799), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 254/837 (30%), Positives = 390/837 (46%), Gaps = 120/837 (14%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYH---LKECC 108
LPY++ F++ LV NG ++ P +F V ++ + AL +L
Sbjct: 236 LPYQVRFQLQKLVWNGDIS-PAKAISFASRVQAALVTENLDVVVQALMRLRQNIKWPSPD 294
Query: 109 YEPSR----WLTDQYRKYMTS---RSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEIN 161
EPS L +R + + K +S + V +HRVQVTP +Y GP +
Sbjct: 295 VEPSEVDVSALVATFRNALEAAVREHKMASTNRHTNPNHVSIHRVQVTPCGIYLDGPYME 354
Query: 162 VSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNG 221
NRVLR + +D+FLR+ F+DE D + PR S D+ R L+NG
Sbjct: 355 SKNRVLRRYANHVDHFLRVEFMDESGDPVR---YDPRAS--IDLI---FQQRFKGVLKNG 406
Query: 222 ILIGDRKFEFLAFSSSQLRESSAWMFASRYG----LTAAEIREWMGNFREIRNVAKYAAR 277
I I RKFEFL FS S LR + W A Y A I + +G F I + AK AAR
Sbjct: 407 INIAGRKFEFLGFSHSSLRSQTCWFVAPFYADGILYNATTIIQNLGRFDHINSPAKQAAR 466
Query: 278 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 337
+GQ+FS + ++ + + I ++ DV+ + VFSDG+G +S + L+
Sbjct: 467 IGQTFSETLTSIPISEEIISVVQDVR----RNDRVFSDGVGTISPSVMYMIWKDYSLRTM 522
Query: 338 -PPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELT----KLDVLAWS-KYQPC 390
P+ FQIR G KG+V+ D + L LR SM K+ + +++ + P
Sbjct: 523 VKPTVFQIRIAGAKGMVSLDSRNKGESLVLRPSMIKFPVTTSFNAYNIEICGSGIRSLPF 582
Query: 391 FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKE- 449
FLN QLI +L LG+ +F K QR+ + +L A T +A + LE +TNI K
Sbjct: 583 FLNAQLIKILEDLGVDGNVFLKLQRDEILRLRATATSTTQAAKFLE------DTNIAKSV 636
Query: 450 --------LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRT 501
L G + + FL +++ KL +L+ + RI +P ++ G +DET
Sbjct: 637 GLPWLISILEALGLRHSDDEFLRRVMELVVLIKLRDLKYRARIRVPKAVTLFGIMDETGY 696
Query: 502 LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 561
L G++F +SL S + R+ ++ VVV ++P +HPGDV++ KAV+
Sbjct: 697 LKEGEIFC-------------TSL--SDKGRREVLLNPKVVVTRSPAMHPGDVQIAKAVD 741
Query: 562 VPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPA 618
VPA L + +C+ F Q G R P+ SG DLDGD+Y V ++D LIP PP Y
Sbjct: 742 VPADSPLRQLHNCIAFSQHGDRDLPSMLSGGDLDGDLYNVIFEDTLIPRVISPPAQYPRV 801
Query: 619 QSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIA 678
Q LD V +D+ ++F ++ D LG IA H AD++ CL LAE S A
Sbjct: 802 QEKVLDRPVVRDDIIDFFVTFMQQDQLGRIATVHQTIADQKALGTFDPQCLLLAELHSTA 861
Query: 679 VDFPKTGVP---AEIP-------------PHLYVKEYPDFMEKPDKPT------------ 710
VDF K+GVP A IP P + + E +E+ D+ T
Sbjct: 862 VDFSKSGVPVDLARIPKFPRYRPDFQAPGPRVRIAESLSLLEEHDQMTVLDDDDEEEDER 921
Query: 711 -----YESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDM----------EVDGF 755
Y+S+ ++GKL+RA+ ++ + +A + P + E GF
Sbjct: 922 PTARYYKSEKILGKLYRAIDEVEFLQHRQNAIERSMAMAA--PSVLKGVWAFVQSETVGF 979
Query: 756 --EDHIDDAIYHKGNYDYKLGNLMDYYGIK------TEAEILTGSIMKMSKSFTKRR 804
+ H+++A+ + Y+ L +M Y TE E+ G+I+ + T R+
Sbjct: 980 LWDHHVENALEIRQIYEDNLLEIMARYSSTPWKSSITEYEVFVGTILGHGQKITHRQ 1036
>gi|226291786|gb|EEH47214.1| predicted protein [Paracoccidioides brasiliensis Pb18]
Length = 1257
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 236/760 (31%), Positives = 353/760 (46%), Gaps = 154/760 (20%)
Query: 139 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE-DLDKIHSTDLSP 197
G Y+ +VTPS +Y+ P I+ NR+ R + D FLR+ F DE ++ KI
Sbjct: 399 GYYYMRSAEVTPSTIYYKPPSIDTGNRIFRRYLEYADRFLRVRFTDEKNMGKIFPY---- 454
Query: 198 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAE 257
S+A + +YTR+ T++NGI IGDR +EFLAFS++QLRE +A+ FAS LTAA
Sbjct: 455 --SNANIVCMNEVYTRVTLTMKNGITIGDRCYEFLAFSNAQLREHAAYFFASLPHLTAAN 512
Query: 258 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGI 317
I + V +D+IE + Y FSDG+
Sbjct: 513 ILQI-----------------------------VEIDDIE----------RNGYTFSDGV 533
Query: 318 GKVSAEFARKVASKCG---LKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYES 374
G +S A+ + S+ L PPS FQ R GG K +
Sbjct: 534 GLISKFLAQMIQSEFAIETLSGEPPSVFQFRLGGCK-----------------------A 570
Query: 375 ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEA 434
L+++ S + LNRQLI +LS+LGI DE+F KK + + L+ +T +A +
Sbjct: 571 PHNGLEIIRHSSFCFASLNRQLIIVLSSLGIPDEMFVKKLQAMLENLELAMTSQEQAIDL 630
Query: 435 LEL-MSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 493
L+ + P + T +L ++ G ++
Sbjct: 631 LQTYVDPNQMTLVLADM--------------------------------------GAFLL 652
Query: 494 GCLDETRTL-NYGQVFVQISGAGYRQ-LHGESSLFS--SSRSRQRF-IVQGLVVVAKNPC 548
GCLDET +L Y + GA Y Q L +F S S + +++GL ++A+NP
Sbjct: 653 GCLDETGSLKGYFRSKRPGGGATYEQKLDCLPEIFVQISRHSEGTYEVIEGLCILARNPS 712
Query: 549 LHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQ 608
LHPGD+RV+KAV++P LHH+ D VV PQ G R + CSG DLDGD Y V WD +L+P
Sbjct: 713 LHPGDIRVVKAVDIPGLHHLKDVVVLPQTGDRDIASMCSGGDLDGDDYVVIWDQDLLPKD 772
Query: 609 Q-DPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEP 667
+ PMDY+ +S LD DV ++D+ ++F +Y+ ND L IA AH AD + E
Sbjct: 773 WFEEPMDYSAPKSKVLDRDVTVDDIIKFFVSYMQNDRLPQIALAHLTIADYSDDGVQDEK 832
Query: 668 CLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKP---DKPTYESQNVIGKLFRAV 724
CL+LA S AVD+ K+G+P + L K++P FME+ Y S+ ++G+L+
Sbjct: 833 CLRLATLHSAAVDYNKSGIPVRMNQDLRPKKWPHFMERKFAMKDSQYTSRKILGQLYDIA 892
Query: 725 K----DIAPHTSCIRL-FTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDY 779
++ H++ RL F + + +++ D ++ F + KG YD L +M
Sbjct: 893 GGVYLNLQSHSAKGRLPFDQRILNANFEIDEKLLSFAKEL------KGEYDADLRRIMAQ 946
Query: 780 YGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAK 839
+ I++E + E IG ALR++ R EK+G
Sbjct: 947 HEIQSE----------------DYKFHEEIGRISSALRQKFRMLCHEKAGGKDFKSLAPL 990
Query: 840 ASAWYHVTYH-------PDYWGCYNQGMNRDHFLSFPWCV 872
A A Y VT + C R +SFPW +
Sbjct: 991 AIAMYRVTSEQMEKAKAAAHSHCTPGEEERMPLISFPWVL 1030
>gi|308476844|ref|XP_003100637.1| hypothetical protein CRE_20435 [Caenorhabditis remanei]
gi|308264655|gb|EFP08608.1| hypothetical protein CRE_20435 [Caenorhabditis remanei]
Length = 1685
Score = 310 bits (793), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 256/865 (29%), Positives = 407/865 (47%), Gaps = 157/865 (18%)
Query: 136 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 195
+ +G V ++ TP+RV + PE + NRVLR + D LRI+F D+D K+ +
Sbjct: 538 MREGYQRVRKIVFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTN-- 595
Query: 196 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM--------- 246
+ S D T + + LR+GI + R F +L S+SQ+R++ A+
Sbjct: 596 --KTSMLLDKT-------VHTYLRDGITVAGRDFGYLGSSNSQMRDNGAYFMEKYSSSQC 646
Query: 247 --FASRYGLT--------AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEI 296
+ SR G+ R+ +G F I N+ K ARLGQ F+ S+ + V+++
Sbjct: 647 REYQSRTGVKPPIDFNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLS-GVNLERC 705
Query: 297 EIIPDVKIEIGKT----KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV 352
+ + GK +Y FSDG+G +S FA+ V+ PS FQ R+ G KGV
Sbjct: 706 TYMTTYDLTGGKNVKRDEYTFSDGVGMMSHHFAQMVSHVMDFGKGVPSCFQFRFRGMKGV 765
Query: 353 VAADP---------------TSSKKLS------LRDSMRKYESEL---TKLDVLAWSKYQ 388
+A +P +S++ S R S K+ S+ +++++ +S
Sbjct: 766 IAVEPLLDNIRQWFLENGIPEASEETSWNLNCVFRPSQIKFISKRHPRDQVEIVKYSSPV 825
Query: 389 PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE---ALELMSPGENTN 445
P LN+ I++L D++ E + E R++ + + L Q A +++ N
Sbjct: 826 PVALNKPFINIL------DQVSEMQSLECHRRVTNRIEELLDRQMLSFAQQMVDETFCRN 879
Query: 446 ILKEL----------LICGYKPDAEPFL-SMMLQTFRASKLLELRTKTRIFIPN--GRSM 492
LKEL G+ +EPF S++ + + S +LR K +I IP+ GRSM
Sbjct: 880 RLKELPRRIDIDYLRTSWGFTLSSEPFFRSLIKASIKFSITRQLR-KEQIPIPSELGRSM 938
Query: 493 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 552
+G +DET L YGQ+FVQ + +L ++ R ++ G V++ KNPC+ G
Sbjct: 939 LGVVDETGRLQYGQIFVQYTK--------NLALKLPPKNAAREVLTGTVLLTKNPCIVAG 990
Query: 553 DVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPP 612
DVRV +AV++P LHHM D VVFPQ G RPHP+E +GSDLDGD Y + WD +L+ + + P
Sbjct: 991 DVRVFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQQLLLDKNEIP 1050
Query: 613 MDYTPAQSMQLDHDVQIEDVE----EYFTNYIVNDSLGIIANAHTVFADREPRKARSEPC 668
D+T S + + + ED++ E++ Y+ DS+G I+N+H +D+ +R C
Sbjct: 1051 FDFT---SEKQKTEFKEEDIDALMREFYVKYLKLDSVGTISNSHLHNSDQYGLNSRV--C 1105
Query: 669 LQLAEKFSIAVDFPKTGVP--------------AEIPPHLYVKEYPDF-MEKPDKPTYES 713
+ LA+K AVDF K+G P E+ P + PD+ M P Y S
Sbjct: 1106 MDLAKKNCQAVDFTKSGQPPDELEKKWRRDEETGEMIPPERAERVPDYHMGNDHAPMYVS 1165
Query: 714 QNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKL 773
+ GKLFR K I I E + D M +DG+++++ A Y+ +L
Sbjct: 1166 PRLCGKLFREFKAIDDVLK-ISEERDEQVEITIDETMMIDGYKEYMHSAREDLSRYNAQL 1224
Query: 774 GNLMDYYGIKTEAEILTGSIMKMSKSFTKR--------RDAEAIGMAVRALRKEARAWFK 825
++M+ YGIKTE E+ +G I+ M + + + I V L K+ R F
Sbjct: 1225 RSMMENYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFYNTNQMIETKVTNLFKKYREHFF 1284
Query: 826 E--------------KSGSDTE----------DDAYAKASAWYHVTYHPDYWGCYNQG-- 859
E + GS+T + KA AWY CY +
Sbjct: 1285 EEFEGGWQANTEVTSRHGSETNILQRQCRAPSNRMMRKAVAWYR--------ACYEEARI 1336
Query: 860 MNRDHFLSFPWCVYDRLVEIKKDKT 884
+ LSF W ++D L +K+ ++
Sbjct: 1337 TRENKKLSFAWLMFDVLGMVKQIRS 1361
>gi|296810484|ref|XP_002845580.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
gi|238842968|gb|EEQ32630.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
Length = 1152
Score = 309 bits (792), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 237/804 (29%), Positives = 385/804 (47%), Gaps = 107/804 (13%)
Query: 141 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 200
V VHR VTP +Y GP V NR+LR + + D FLR+ F+DE+ D + P +
Sbjct: 363 VLVHRAMVTPCGIYLLGPYAEVKNRILRKYLGNTDYFLRVEFLDENGDPVF---FDPNAN 419
Query: 201 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG------LT 254
+ R ++ GI + R F FL FS S LR + W FA+ + L
Sbjct: 420 -----LEKIFHERFSGVMKRGIEVAGRNFNFLGFSHSSLRSQTCW-FAAPFTTPDGEYLD 473
Query: 255 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVF 313
A I +G+F IR+ +K AAR+GQ+FS + ++SV + + + +PDV+ + +F
Sbjct: 474 ARTIINSIGHFDHIRSPSKQAARIGQAFSDTLTSISVSKEAVRLRVPDVE----RNGRIF 529
Query: 314 SDGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRK 371
SDG+G +S E K+ ++ L++ P+ FQIR G KG+V+ D + + L LR+SM K
Sbjct: 530 SDGVGVISRELMYKIWNEYALREKVKPTVFQIRIAGAKGMVSLDTSRQGEFLMLRESMVK 589
Query: 372 YESELT-KLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 429
+ ++ + +++ A K P +LN Q+I +L LG+ F + Q++ + L +
Sbjct: 590 FPTDDSYNIEICGAGIKALPFYLNSQIIKILEDLGVPFAAFHQLQQDEILSLYSTFNSTE 649
Query: 430 KAQEALE---LMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 486
+A + LE + +L L G + +PFL +++ KL +L+ + RI +
Sbjct: 650 QAAKFLEDSPVPRSLRLPWLLLVLKGLGLRYTLDPFLHRIMELTTLLKLRDLKYRARIRV 709
Query: 487 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 546
PN ++ G +DET L +++ +F S R+ +V+ VVV ++
Sbjct: 710 PNAVTLYGIMDETGYLKENEIYC---------------VFLSEDGRREILVRDNVVVTRS 754
Query: 547 PCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
P LHPGDV+V+ AV+VPA L + +CV F Q G+R P+ SG DLDGD+Y + +D
Sbjct: 755 PALHPGDVQVVNAVDVPANSPLRRLHNCVAFSQHGVRDLPSMLSGGDLDGDLYNIIYDTR 814
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
LIP Q PP DY ++ +L+ V+ D+ ++F ++ D LG IA H AD+
Sbjct: 815 LIPQQTFPPADYPLVKTRELNRKVESNDIIDFFVTFMQQDQLGRIATTHQAIADQSSLGT 874
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPA---EIPPHLYVKEYPDFM----------------- 703
R E CL+LA S+AVD+ K+G+P +IP ++ PDFM
Sbjct: 875 RDETCLKLAHLHSVAVDYSKSGIPVNVLDIPRAPRIR--PDFMAPSPRILIEDSIEDSIE 932
Query: 704 -----------------EKPDKPTYESQNVIGKLFRAV---------KDIAPHTSCIRLF 737
++P Y+S N++G+L+R++ +D+ + R
Sbjct: 933 HIIRETEKTVQEDDDDNDRPRIRYYKSHNILGRLYRSIDEQSFLRRLRDVGTVNNDSRKS 992
Query: 738 TKEVARRSYDPDMEVDGFEDHIDDAIYH--KGNYDYKLGNLMDYYGIK------TEAEIL 789
+ R + EVDGF + I H K Y+ +L LM Y TE E++
Sbjct: 993 VLQSIWRYV--EKEVDGFFWNHLTGICHDIKEIYEDQLRELMRQYSATPWKSSITEYEVV 1050
Query: 790 TGSIMKMSKSFTKRRDAEA---IGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHV 846
G+I+ +RRD E + + L + + ++ TE + A W +
Sbjct: 1051 VGTILGPGHK-QRRRDKETSKEMRASYSRLVEFTISMIRDTESGGTEALERSIACFWVAI 1109
Query: 847 TYHPDYWGCYNQGMNRDHFLSFPW 870
+ N++ LSFPW
Sbjct: 1110 NEQSFSQKPGFRNANQEKLLSFPW 1133
>gi|225678504|gb|EEH16788.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 1262
Score = 309 bits (792), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 264/881 (29%), Positives = 403/881 (45%), Gaps = 166/881 (18%)
Query: 49 GIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKL------- 101
G LPY ++F++ LV NG ++ P+ +F V + + ALDKL
Sbjct: 315 GGDLPYRVMFQLQKLVWNGAIS-PVNAISFAYRVGKELVDADLDVVVQALDKLERDIQWS 373
Query: 102 ---YHLKEC-CYEPSRWLTDQYRKYMTSRS-KPSSPAISLDDGLVYVHRVQVTPSRVYFC 156
E + + + R+ S+ I L++ + +HR QVTP +Y
Sbjct: 374 SPDVQASEVDVVALMKLFANALEIVLRERALSRSNRQIHLNN--ILIHRAQVTPCGIYLY 431
Query: 157 GPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILS 216
GP++ NRVLR + ++D+FLR+ F+DE D I R S + +R
Sbjct: 432 GPQLETKNRVLRIYEANVDHFLRVEFVDESGDPI-------RYDSRASVDAI-FQSRFKG 483
Query: 217 TLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYGL-TAAEIREWMGNFREIRNVA 272
L+ GI I RKFEFL FS S LR + W F S L A I + +G F I + A
Sbjct: 484 VLKEGITIAGRKFEFLGFSHSSLRSQTCWFVAPFVSGGTLYNATVIIQNLGRFDHIHSPA 543
Query: 273 KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC 332
K AAR+GQ+FS + ++ + D + + DV+ + VFSDG+G +S ++
Sbjct: 544 KQAARIGQTFSDTLTSIPISFDMLSVGEDVE----RNGRVFSDGVGTISPSLMYEIWKDH 599
Query: 333 GLKDN-PPSAFQIR-----------------------YGGYKGVVAADPT-SSKKLSLRD 367
L+ P+ FQIR + G KG++A D T + K L LR
Sbjct: 600 SLRAKVKPTVFQIRVAAPEPLLAGFHAYRGILLTETWFIGAKGMIALDSTKTGKSLMLRK 659
Query: 368 SMRKYE--SELTKLDV-LAWS--KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD 422
SM K+ + L++ L S K P FLN QLI +L LG+ F K Q + + +L
Sbjct: 660 SMVKFPVPETVGGLNIELCGSGLKALPFFLNAQLIKILEDLGVEQSAFLKLQADEIERLR 719
Query: 423 AILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRAS--------- 473
A T P AQ A L E+T+I K + + P+L +L+ FR S
Sbjct: 720 A--TAPSTAQAARFL----EDTHIAKSIGL--------PWLISILEGFRLSHTNDEFLRR 765
Query: 474 --------KLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF-VQISGAGYRQLHGESS 524
KL +L+ + RI +PN ++ G +DET L G++F V +S G+R++
Sbjct: 766 VMELAVLIKLRDLKYRARIRVPNAVTLFGIMDETGILKEGEIFCVTLSEDGHREV----- 820
Query: 525 LFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRP 581
+V+ VVV ++P +HPGDV+V +AV+VPA L + +C+ F Q G R
Sbjct: 821 -----------LVRPRVVVTRSPAMHPGDVQVARAVDVPADSPLRQLHNCIAFSQYGDRD 869
Query: 582 HPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIV 641
P+ SG DLDGD+Y V +D+ LIP PP +Y + L+ V +D+ ++F ++
Sbjct: 870 LPSMLSGGDLDGDLYNVIYDETLIPKITVPPAEYPRVEEKVLNRPVVTDDIIDFFVTFMQ 929
Query: 642 NDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVP---AEIPPHLYVKE 698
D LG IA H AD+ R E CL LAE S AVDF K+GVP A IP + +
Sbjct: 930 QDQLGRIATIHQAIADQRDRGTFDEQCLLLAELHSTAVDFSKSGVPVDLARIPK--FPRY 987
Query: 699 YPDFM-------------------------------EKPDKPTYESQNVIGKLFRAVKDI 727
PDF E+P Y+S ++GKL+R++ ++
Sbjct: 988 RPDFQAHGPRVRIAESLSLHEEDEETTVHDLDDEDDERPPTRFYKSYKILGKLYRSIDEV 1047
Query: 728 ---------APHTSCIRLFTKEVARRSYDPDMEVDGF--EDHIDDAIYHKGNYDYKLGNL 776
S + + + +Y E GF + HI++A Y + Y+ L L
Sbjct: 1048 DFLHKWQHATQRPSGLAAPSVLMGVWAY-VQAETKGFLWDHHIENARYIREIYEDNLWGL 1106
Query: 777 MDYY------GIKTEAEILTGSIMKMSKSFTKRRDAEAIGM 811
M Y +E E+ G+I+ + ++R+ + M
Sbjct: 1107 MHRYSSTPWKSFISEYEVFVGNILGHGQKLSQRQKDASTEM 1147
>gi|327354796|gb|EGE83653.1| RNA-dependent RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1240
Score = 308 bits (790), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 255/838 (30%), Positives = 390/838 (46%), Gaps = 121/838 (14%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYH---LKECC 108
LPY++ F++ LV NG ++ P +F V ++ + AL +L
Sbjct: 321 LPYQVRFQLQKLVWNGDIS-PAKAISFASRVQAALVTENLDVVVQALMRLRQNIKWPSPD 379
Query: 109 YEPSR----WLTDQYRKYMTS---RSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEIN 161
EPS L +R + + K +S + V +HRVQVTP +Y GP +
Sbjct: 380 VEPSEVDVSALVATFRNALEAAVREHKMASTNRHTNPNHVSIHRVQVTPCGIYLDGPYME 439
Query: 162 VSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNG 221
NRVLR + +D+FLR+ F+DE D + PR S D+ R L+NG
Sbjct: 440 SKNRVLRRYANHVDHFLRVEFMDESGDPVR---YDPRAS--IDLI---FQQRFKGVLKNG 491
Query: 222 ILIGDRKFEFLAFSSSQLRESSAWMFASRYG----LTAAEIREWMGNFREIRNVAKYAAR 277
I I RKFEFL FS S LR + W A Y A I + +G F I + AK AAR
Sbjct: 492 INIAGRKFEFLGFSHSSLRSQTCWFVAPFYADGILYNATTIIQNLGRFDHINSPAKQAAR 551
Query: 278 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 337
+GQ+FS + ++ + + I ++ DVK + VFSDG+G +S + L+
Sbjct: 552 IGQTFSETLTSIPISEEIISVVQDVK----RNDRVFSDGVGTISPSVMYMIWKDYSLRTM 607
Query: 338 -PPSAFQIRYG-GYKGVVAADP-TSSKKLSLRDSMRKYESELT----KLDVLAWS-KYQP 389
P+ FQIR G KG+V+ D + L LR SM K+ + +++ + P
Sbjct: 608 VKPTVFQIRIAAGAKGMVSLDSRNKGESLVLRPSMIKFPVTTSFNAYNIEICGSGIRSLP 667
Query: 390 CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKE 449
FLN QLI +L LG+ +F K QR+ + +L A T +A + LE +TNI K
Sbjct: 668 FFLNAQLIKILEDLGVDGNVFLKLQRDEILRLRATATSTTQAAKFLE------DTNIAKS 721
Query: 450 ---------LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETR 500
L G + + FL +++ KL +L+ + RI +P ++ G +DET
Sbjct: 722 VGLPWLISILEALGLRHSDDEFLRRVMELVVLIKLRDLKYRARIRVPKAVTLFGIMDETG 781
Query: 501 TLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAV 560
L G++F +SL S + R+ ++ VVV ++P +HPGDV++ KAV
Sbjct: 782 YLKEGEIFC-------------TSL--SDKGRREVLLNPKVVVTRSPAMHPGDVQIAKAV 826
Query: 561 NVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTP 617
+VPA L + +C+ F Q G R P+ SG DLDGD+Y V ++D LIP PP Y
Sbjct: 827 DVPADSPLRQLHNCIAFSQHGDRDLPSMLSGGDLDGDLYNVIFEDTLIPRVISPPAQYPR 886
Query: 618 AQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSI 677
Q LD V +D+ ++F ++ D LG IA H AD++ CL LAE S
Sbjct: 887 VQEKVLDRPVVRDDIIDFFVTFMQQDQLGRIATVHQTIADQKALGTFDPQCLLLAELHST 946
Query: 678 AVDFPKTGVP---AEIP-------------PHLYVKEYPDFMEKPDKPT----------- 710
AVDF K+GVP A IP P + + E +E+ D+ T
Sbjct: 947 AVDFSKSGVPVDLARIPKFPRYRPDFQAPGPRVRIAESLSLLEEHDQMTVLDDDDDEEDE 1006
Query: 711 ------YESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDM----------EVDG 754
Y+S+ ++GKL+RA+ ++ + +A + P + E G
Sbjct: 1007 RPTARYYKSEKILGKLYRAIDEVEFLQHRQNAIERSMAMAA--PSVLKGVWAFVQSETVG 1064
Query: 755 F--EDHIDDAIYHKGNYDYKLGNLMDYYGIK------TEAEILTGSIMKMSKSFTKRR 804
F + H+++A+ + Y+ L +M Y TE E+ G+I+ + T R+
Sbjct: 1065 FLWDHHVENALEIRQIYEDNLLEIMARYSSTPWKSSITEYEVFVGTILGHGQKITHRQ 1122
>gi|440476070|gb|ELQ44707.1| RNA-dependent rna polymerase [Magnaporthe oryzae Y34]
gi|440486893|gb|ELQ66719.1| RNA-dependent rna polymerase [Magnaporthe oryzae P131]
Length = 1338
Score = 308 bits (790), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 218/709 (30%), Positives = 345/709 (48%), Gaps = 70/709 (9%)
Query: 49 GIALPYEILFKINLLVQNG----CVAGPLLDSNFYRLVD------PYRAPVSISCIEHAL 98
G +LP+ LF + L NG +L F R + + AP ++ + A
Sbjct: 345 GKSLPHSHLFVLQALFYNGYLHPATVLEILHQLFRRFYEDRLSGRTFIAPEAVKSLMDA- 403
Query: 99 DKLYHLKECCYEPSRWLTDQY------RKYMTSRSKPSSPAISLDDG-------LVYVHR 145
EC PS + +Y K++ +++ L G L +++R
Sbjct: 404 -------ECIPWPSPYEDPEYFEVSSLMKWIYEKNEEFQGGFDLRTGQLRQNSNLTHIYR 456
Query: 146 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI 205
V VTP+R+ GPEI NRVLR + + D F+R+ F DE+ I SP+ I
Sbjct: 457 VVVTPTRITLHGPEIENKNRVLRKYPKHQDCFVRVQFCDENTQDIR---FSPK------I 507
Query: 206 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL----TAAEIREW 261
+ R+Y+R L L GI I R + FL FS S LR SAW A + T A I +
Sbjct: 508 SYDRVYSRFLDVLNRGIQIAGRVYNFLGFSHSSLRTHSAWFSAPFFDQGSQHTHASIIKS 567
Query: 262 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEII---PDVKIEIGKTKYVFSDGIG 318
+G F I+ AK AAR+GQ+FS + + + ++E++ PD+ G VFSDG+G
Sbjct: 568 LGEFSSIQCPAKCAARIGQAFSETPSVVDLRDHDVEVVTHFPDITNRDGSR--VFSDGVG 625
Query: 319 KVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESE-L 376
K+S + +K N P+ FQ+R+GG KG++A D T K+ RDSM K+ES+ +
Sbjct: 626 KISESMMHIIWENIPMKKNAPTCFQVRWGGAKGMLALDMTLKGTKVCFRDSMTKFESDDV 685
Query: 377 TKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL 435
+L++ + SK P LNRQ+I +L +G F + Q +++L +I L
Sbjct: 686 HQLEICDSGSKPIPLVLNRQMIKILEDMGTDRSWFMRLQSYRLQELRSITASAYNTWHFL 745
Query: 436 ELMSPGENTNILKELLIC---GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 492
+ + G+ + K + G + F+ +++ +L L+ K RI + G+++
Sbjct: 746 DAQNVGQAIKLGKFINFADKHGMDYRTDDFMRSVVEAVVLRELRLLKHKARIPVKYGKTL 805
Query: 493 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 552
G +DET L G+V + G+ Q GE + +V+V ++P LHPG
Sbjct: 806 FGIIDETGYLREGEVVISF---GFSQT-GEDQPTPPQDGQ-------IVIVTRSPALHPG 854
Query: 553 DVRVLKAVNVPALH---HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ 609
D+++ K V P H H ++C++F Q G R P++ SG DLDGDIY V WD + +P +
Sbjct: 855 DIQIAKQVVPPPSHPLSHHINCIIFSQHGQRDLPSQLSGGDLDGDIYNVIWDGDAMPKET 914
Query: 610 DPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCL 669
P DY ++ + V D+ ++F +++ D LG+IA H + AD+ S+ C
Sbjct: 915 FDPADYPRVEAQDIGRRVVSADMAQFFIDFMKTDHLGVIATRHVILADQLDDGTLSQECR 974
Query: 670 QLAEKFSIAVDFPKTGVPAEIPPHLYVKEY-PDFMEKPDKPTYESQNVI 717
LA S AVDF K+G+PAE+ ++ PDF+ Y + I
Sbjct: 975 TLAGLHSTAVDFSKSGIPAELKALPRANKFRPDFLSPGPITNYHDKGKI 1023
>gi|389628880|ref|XP_003712093.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
gi|351644425|gb|EHA52286.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
Length = 1292
Score = 308 bits (789), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 218/709 (30%), Positives = 345/709 (48%), Gaps = 70/709 (9%)
Query: 49 GIALPYEILFKINLLVQNG----CVAGPLLDSNFYRLVD------PYRAPVSISCIEHAL 98
G +LP+ LF + L NG +L F R + + AP ++ + A
Sbjct: 345 GKSLPHSHLFVLQALFYNGYLHPATVLEILHQLFRRFYEDRLSGRTFIAPEAVKSLMDA- 403
Query: 99 DKLYHLKECCYEPSRWLTDQY------RKYMTSRSKPSSPAISLDDG-------LVYVHR 145
EC PS + +Y K++ +++ L G L +++R
Sbjct: 404 -------ECIPWPSPYEDPEYFEVSSLMKWIYEKNEEFQGGFDLRTGQLRQNSNLTHIYR 456
Query: 146 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI 205
V VTP+R+ GPEI NRVLR + + D F+R+ F DE+ I SP+ I
Sbjct: 457 VVVTPTRITLHGPEIENKNRVLRKYPKHQDCFVRVQFCDENTQDIR---FSPK------I 507
Query: 206 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL----TAAEIREW 261
+ R+Y+R L L GI I R + FL FS S LR SAW A + T A I +
Sbjct: 508 SYDRVYSRFLDVLNRGIQIAGRVYNFLGFSHSSLRTHSAWFSAPFFDQGSQHTHASIIKS 567
Query: 262 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEII---PDVKIEIGKTKYVFSDGIG 318
+G F I+ AK AAR+GQ+FS + + + ++E++ PD+ G VFSDG+G
Sbjct: 568 LGEFSSIQCPAKCAARIGQAFSETPSVVDLRDHDVEVVTHFPDITNRDGSR--VFSDGVG 625
Query: 319 KVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESE-L 376
K+S + +K N P+ FQ+R+GG KG++A D T K+ RDSM K+ES+ +
Sbjct: 626 KISESMMHIIWENIPMKKNAPTCFQVRWGGAKGMLALDMTLKGTKVCFRDSMTKFESDDV 685
Query: 377 TKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL 435
+L++ + SK P LNRQ+I +L +G F + Q +++L +I L
Sbjct: 686 HQLEICDSGSKPIPLVLNRQMIKILEDMGTDRSWFMRLQSYRLQELRSITASAYNTWHFL 745
Query: 436 ELMSPGENTNILKELLIC---GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 492
+ + G+ + K + G + F+ +++ +L L+ K RI + G+++
Sbjct: 746 DAQNVGQAIKLGKFINFADKHGMDYRTDDFMRSVVEAVVLRELRLLKHKARIPVKYGKTL 805
Query: 493 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 552
G +DET L G+V + G+ Q GE + +V+V ++P LHPG
Sbjct: 806 FGIIDETGYLREGEVVISF---GFSQT-GEDQPTPPQDGQ-------IVIVTRSPALHPG 854
Query: 553 DVRVLKAVNVPALH---HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ 609
D+++ K V P H H ++C++F Q G R P++ SG DLDGDIY V WD + +P +
Sbjct: 855 DIQIAKQVVPPPSHPLSHHINCIIFSQHGQRDLPSQLSGGDLDGDIYNVIWDGDAMPKET 914
Query: 610 DPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCL 669
P DY ++ + V D+ ++F +++ D LG+IA H + AD+ S+ C
Sbjct: 915 FDPADYPRVEAQDIGRRVVSADMAQFFIDFMKTDHLGVIATRHVILADQLDDGTLSQECR 974
Query: 670 QLAEKFSIAVDFPKTGVPAEIPPHLYVKEY-PDFMEKPDKPTYESQNVI 717
LA S AVDF K+G+PAE+ ++ PDF+ Y + I
Sbjct: 975 TLAGLHSTAVDFSKSGIPAELKALPRANKFRPDFLSPGPITNYHDKGKI 1023
>gi|240276859|gb|EER40370.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H143]
Length = 1240
Score = 308 bits (788), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 257/844 (30%), Positives = 392/844 (46%), Gaps = 135/844 (15%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 111
+PY + F++ LV NG ++ P +F V RA + I ++ + L L P
Sbjct: 321 MPYRVRFQLQKLVWNGDIS-PAKAISFASRV---RAALVIEDLDIVVRALMRLSSDVKWP 376
Query: 112 SR----------WLTDQYR---------KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSR 152
S L + ++ + MT ++P P + +HR Q+TP
Sbjct: 377 SPDVEASEVDVPALVEVFKNALESTAREREMTRSNRPMHP------NHISIHRAQITPCG 430
Query: 153 VYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYT 212
Y GP NRVLRH+ +D+FLR+ F+DE D + PR S D+ +
Sbjct: 431 TYLDGPHAETKNRVLRHYSSHVDHFLRVEFVDETGDPVR---YDPRAS--IDMI---FES 482
Query: 213 RILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG----LTAAEIREWMGNFREI 268
R + L++GI I RKFEFL FS S LR + W A Y A+ I + +G F I
Sbjct: 483 RFKTVLKSGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYKDRILYNASTIIQNLGRFDHI 542
Query: 269 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV 328
++ AK AAR+GQ+FS + ++ + I I DV+ + VFSDG+G +S +
Sbjct: 543 QSPAKQAARIGQTFSDTLTSIPISDKYISIGKDVE----RNGRVFSDGVGTISPSVMYMI 598
Query: 329 ASKCGLKDN-PPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYE--SELTKLDV-LA 383
L+ P+ FQIR G KG+++ D K L LR SM K+ + ++ +
Sbjct: 599 WKDHSLRTVVKPTVFQIRLAGAKGMISLDSRKKGKSLVLRPSMIKFHLPNSYNAFNIEIC 658
Query: 384 WSKYQPC--FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPG 441
S +P FLN QLI +L LG+ D +F + Q + + +L A T KA LE
Sbjct: 659 GSGLKPLPFFLNAQLIKILEDLGVDDSVFLRLQADEISRLRATATSTAKAARFLE----- 713
Query: 442 ENTNILKELLI---------CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 492
+TNI K + + G + + FL +++ KL +L+ + RI +PN ++
Sbjct: 714 -DTNIAKSVGLPWLINILEGFGLRHSNDEFLRRVMELAVLIKLRDLKYRARIRVPNAVTL 772
Query: 493 MGCLDETRTLNYGQVF-VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 551
G +DET L G+VF +S G R++ +V VVV ++P +HP
Sbjct: 773 FGIMDETGILKEGEVFCTSLSDKGVREV----------------LVNPRVVVTRSPAMHP 816
Query: 552 GDVRVLKAVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQ 608
GDV++ +AV+VPA L + +C+ F Q G R P+ SG DLDGD+Y V +D+ L+P +
Sbjct: 817 GDVQIARAVDVPADSPLRQLHNCIAFSQHGHRDLPSMLSGGDLDGDLYNVIFDNTLLPKR 876
Query: 609 QDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPC 668
P +Y Q L V ED+ ++F ++ D LG IA H ADR P C
Sbjct: 877 IARPAEYPRVQEKVLGRAVVREDIIDFFVTFMQQDQLGRIATIHQALADRRPLGTFDPEC 936
Query: 669 LQLAEKFSIAVDFPKTGVP---AEIP-------------PHLYVKEYPDFME-------- 704
L LAE S AVDF KTGVP A IP P + + E +E
Sbjct: 937 LLLAELHSTAVDFSKTGVPVDLARIPKFPSCRPDFQAPSPRIRIAENLSLLEGDMDAVQD 996
Query: 705 --------KPDKPTYESQNVIGKLFRA---VKDIAPHTSCIRLFTKEVARRSYDP----- 748
+P Y+S+N++GKL+R+ VK + S + L + A
Sbjct: 997 GGDEDDDERPAVRFYKSENILGKLYRSIDEVKFLQHRQSAMELPSAMGAPSVLQGVWEFV 1056
Query: 749 DMEVDGF--EDHIDDAIYHKGNYDYKLGNLMDYYGIK------TEAEILTGSIMKMSKSF 800
E +GF + HI+ A+ + Y+ L +M Y TE E+ G+I+ +
Sbjct: 1057 QREAEGFLWDHHIEHALDIRQIYEDNLLEIMARYSSTPWKSSITEYEVFVGTILGHGQKL 1116
Query: 801 TKRR 804
++R+
Sbjct: 1117 SQRQ 1120
>gi|225554768|gb|EEH03063.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus G186AR]
Length = 1240
Score = 308 bits (788), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 257/844 (30%), Positives = 390/844 (46%), Gaps = 135/844 (15%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 111
+PY + F++ LV NG ++ P +F V RA + I ++ + L L P
Sbjct: 321 MPYRVRFQLQKLVWNGDIS-PAKAISFASRV---RATLVIEDLDIVVRALMRLSSDVKWP 376
Query: 112 SR----------WLTDQYR---------KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSR 152
S L + ++ + MT ++P P V +HR Q+TP
Sbjct: 377 SPDVEASEVDVPALVEVFKNALESTAREREMTRSNRPMHP------NHVSIHRAQITPCG 430
Query: 153 VYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYT 212
Y GP NRVLRH+ +D+FLR+ F+DE D + PR S D+ +
Sbjct: 431 TYLDGPHAETKNRVLRHYSSHVDHFLRVEFVDETGDPVR---YDPRAS--IDMI---FES 482
Query: 213 RILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG----LTAAEIREWMGNFREI 268
R + L++GI I RKFEFL FS S LR + W A Y A I + +G F I
Sbjct: 483 RFKTVLKSGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYKDRILYNATTIIQNLGRFDHI 542
Query: 269 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV 328
++ AK AAR+GQ+FS + ++ + I + DV+ + VFSDG+G +S +
Sbjct: 543 QSPAKQAARIGQTFSDTLTSIPISEKYISVGKDVE----RNGRVFSDGVGTISPSVMYMI 598
Query: 329 ASKCGLKDN-PPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELT----KLDVL 382
L+ P+ FQIR G KG+++ D K L LR SM K+ + +++
Sbjct: 599 WKDHSLRTVVKPTVFQIRLAGAKGMISLDSRKKGKSLVLRPSMIKFHLPHSYNAFNIEIC 658
Query: 383 AWS-KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPG 441
K P FLN QLI +L LG+ D +F + Q + + +L A T KA LE
Sbjct: 659 GSGLKPLPFFLNAQLIKILEDLGVDDSVFLRLQADEISRLRATATSTAKAARFLE----- 713
Query: 442 ENTNILKELLI---------CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 492
+TNI K + + G + + FL +++ KL +L+ + RI +PN ++
Sbjct: 714 -DTNIAKSVGLPWLINILEGFGLRHSNDEFLRRVMELAVLIKLRDLKYRARIRVPNAVTL 772
Query: 493 MGCLDETRTLNYGQVF-VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 551
G +DET L G+VF +S G R++ +V VVV ++P +HP
Sbjct: 773 FGIMDETGILKEGEVFCTSLSDKGVREV----------------LVNPRVVVTRSPAMHP 816
Query: 552 GDVRVLKAVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQ 608
GDV++ +AV+VPA L + +C+ F Q G R P+ SG DLDGD+Y V +D+ L+P +
Sbjct: 817 GDVQIARAVDVPADSPLRQLHNCIAFSQHGHRDLPSMLSGGDLDGDLYNVIFDNTLLPKR 876
Query: 609 QDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPC 668
P +Y Q L V ED+ ++F ++ D LG IA H ADR P C
Sbjct: 877 IARPAEYPRVQEKVLGRAVVREDIIDFFVTFMQQDQLGRIATIHQALADRRPLGTFDPEC 936
Query: 669 LQLAEKFSIAVDFPKTGVP---AEIP-------------PHLYVKEYPDFME-------- 704
L LAE S AVDF KTGVP A IP P + + E +E
Sbjct: 937 LLLAELHSTAVDFSKTGVPVDLARIPKFPSCRPDFQAPSPRIRIAENLSLLEGDMDAVQD 996
Query: 705 --------KPDKPTYESQNVIGKLFRA---VKDIAPHTSCIRLFTKEVARRSYDP----- 748
+P Y+S+N++GKL+R+ VK + S + L + A
Sbjct: 997 GGDEDDDERPAVRFYKSENILGKLYRSIDEVKFLQHRQSAMELPSAMGAPSVLQGVWEFV 1056
Query: 749 DMEVDGF--EDHIDDAIYHKGNYDYKLGNLMDYYGIK------TEAEILTGSIMKMSKSF 800
E +GF + HI+ A+ + Y+ L +M Y TE E+ G+I+ +
Sbjct: 1057 QREAEGFLWDHHIEHALDIRQIYEDNLLEIMARYSSTPWKSSITEYEVFVGTILGHGQKL 1116
Query: 801 TKRR 804
++R+
Sbjct: 1117 SQRQ 1120
>gi|384499712|gb|EIE90203.1| hypothetical protein RO3G_14914 [Rhizopus delemar RA 99-880]
Length = 595
Score = 306 bits (784), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 278/480 (57%), Gaps = 39/480 (8%)
Query: 418 VRQLDAILTDPLKAQEALELMSPGE--NTNILKELLICGYKPDAEPFLSMMLQTFRASKL 475
+R++D IL P +A L L + E +++ ++ G+ +P++ +L FR + L
Sbjct: 5 LREIDKILARPEEAIRVL-LNNADEAGTAHMMASIIQAGFLERGDPYIKNLLNLFRVNVL 63
Query: 476 LELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRF 535
EL+ K +I +P G ++G +DET TL+ G+V++Q+ +S +
Sbjct: 64 KELKKKAKILVPQGAFLLGVMDETGTLDEGEVYIQVWD-------------NSHSGTMKQ 110
Query: 536 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDI 595
++ G V +NPC HPGDVRV+ AV+ P L H+V+ VVFP KG R P+ CSG DLDGD
Sbjct: 111 VITGECAVFRNPCFHPGDVRVVTAVDRPNLSHLVNVVVFPAKGYRDIPSMCSGGDLDGDD 170
Query: 596 YFVCWDDELIPPQQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTV 654
Y + WD +LIP ++D PMDYT + +++ DV+I D++ +F NYI ND+LG IANAH
Sbjct: 171 YTIFWDPKLIPTRKDVAPMDYTASDPRKVE-DVKIRDIQRFFVNYINNDNLGQIANAHLA 229
Query: 655 FADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQ 714
AD + A C+ LA+ S AVDFPK+G PA + L V+ +PDFM+K DK +Y S+
Sbjct: 230 TADFSEKGAMDGRCILLAQLHSEAVDFPKSGKPATLSEDLIVRTFPDFMQKKDKESYASK 289
Query: 715 NVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLG 774
V+G +FR++ D + + + + T+E YD M + G +I +A + +Y+ L
Sbjct: 290 KVLGHIFRSI-DKSDYKNYMSKLTEEAV---YDTRMHLSGMAYYIGEARTLRRDYNRDLL 345
Query: 775 NLMDYYGIKTEAEILTGSI---MKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSD 831
LM+ G++TEAEI++G I +K KS T+ ++ A+++ + R F+++ D
Sbjct: 346 ALMNQNGVQTEAEIMSGYIIKWLKKGKSKTRYEQHDSTMKAIKSFKDLWRKEFEKEFMDD 405
Query: 832 TE---DDAY-----AKASAWYHVTYHPD--YWGCYNQGMNRDHFLSFPWCVYDRLVEIKK 881
T+ D A+ AKA+AWY+VTYHP QG FLSFPW ++D + EI K
Sbjct: 406 TQKTVDPAHRASMDAKAAAWYYVTYHPSERQRDFSEQG----GFLSFPWVIHDYVCEIAK 461
>gi|241620373|ref|XP_002408656.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215503015|gb|EEC12509.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 529
Score = 305 bits (781), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 202/544 (37%), Positives = 299/544 (54%), Gaps = 32/544 (5%)
Query: 258 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK--TKYVFSD 315
+R +G+ IR +KY ARLGQ+FS S ++V + D+ ++ K KY FSD
Sbjct: 1 VRAAIGDLSSIRVPSKYMARLGQAFSQSMGYVTVPQACTRVDRDILLKGRKPGIKYNFSD 60
Query: 316 GIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYES 374
G+G++S +V + + PSA QIRYGG KG++ DPT ++ RDSM KY S
Sbjct: 61 GVGRISPSVLARVHAALP-AEGKPSAIQIRYGGCKGMLVLDPTLEGDQIVFRDSMFKYPS 119
Query: 375 ELTKLDVLAWSKYQPCFLNRQLISLLS-------TLGIWDEIFEKKQREAVRQ-LDAILT 426
+ +L +L S+ + LNR +I++LS I D +F + Q++ + LD++
Sbjct: 120 QSEELFILKTSRPRVVKLNRPMITILSQKMTRSGVQDIEDGVFMRMQQDCLEPYLDSLFN 179
Query: 427 DPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 486
D K AL L S +EL G AEPF +L L +L+ K I +
Sbjct: 180 D--KGTAAL-LQSESSLRMPYRELAEAGLDLHAEPFFRSLLWALHHRCLKDLKDKMNILV 236
Query: 487 PN--GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESS---LFSSSRSRQRFIVQGLV 541
P GR+M G LDET TL YGQV+V+ S R + S L ++ R R G V
Sbjct: 237 PPRFGRTMFGVLDETATLQYGQVYVRYSTDLDRFGPDDESQYRLCTTFRLRA-----GRV 291
Query: 542 VVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWD 601
+V KNPC+HPGD+R+L+AV+VPAL H+ DCVVFPQ G RPHP+E +GSDLDGD Y V W
Sbjct: 292 MVTKNPCIHPGDIRLLEAVDVPALSHIRDCVVFPQIGKRPHPDEMAGSDLDGDEYSVIWY 351
Query: 602 DELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPR 661
+ L+ + D PMD+ +++++ + VQ+ED+ ++ YIVND +G++ +AH +AD +
Sbjct: 352 EPLLFKRNDDPMDFYSSEALEKEGTVQVEDMVDFMCTYIVNDIVGLMGSAHLAWADLLKQ 411
Query: 662 KARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEK-PDKPTYESQNVIGKL 720
+S+ CL LA+K S VDF KTG + YPDFMEK +K TY S+ +G L
Sbjct: 412 GVKSQRCLVLAKKCSECVDFAKTGSSTRLAQSEKPPRYPDFMEKHAEKYTYPSKRALGLL 471
Query: 721 FRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYY 780
+R +K + ++ V D + V G E+ ++ A Y L +++ Y
Sbjct: 472 YRNLKGMVADSA------GPVGDVRPDRRLLVPGREEFVEGAREALREYKLALCSILTSY 525
Query: 781 GIKT 784
G+ +
Sbjct: 526 GVGS 529
>gi|393904650|gb|EJD73758.1| RNA dependent RNA polymerase [Loa loa]
Length = 1022
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 228/733 (31%), Positives = 363/733 (49%), Gaps = 90/733 (12%)
Query: 239 LRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKE-TLSVHMDEIE 297
+R++ + + G A +IRE +G F N+ K +R+GQ F+ +K T+++ +
Sbjct: 1 MRDNGCYFYDDGKGGQAHKIREQLGKFDRC-NIPKMMSRMGQCFTQAKRCTVTLKRHKYN 59
Query: 298 IIPDV--KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAA 355
DV + + Y+FSDG GKVS EFA K+A GL + PS +QIR+ G KGV++
Sbjct: 60 KTYDVIGGRDTNQAFYIFSDGAGKVSKEFAEKIALDIGLGTSVPSCYQIRHRGIKGVLSV 119
Query: 356 DPT--------SSKKLSLRDSMRKYESELTKL----------------DVLAWSKYQPCF 391
DP+ ++ + + M +++L L +++ +S
Sbjct: 120 DPSLDQRKHWAAANNVVDNNKMTNKQNDLAVLFRPSQDKFKAPRDEYIEIVKYSTPTSVC 179
Query: 392 LNRQLISLLSTL-GIWDEIFEKKQREAVRQLDAI----LTDPLKAQEAL--ELMSPGENT 444
LNR +IS+L + G+ ++ R+ + L I L D L ++E +L
Sbjct: 180 LNRPMISILDQVSGMQGFSVHERIRKRIHDLLDIQMTQLADMLMSEEKCREKLNELPWRV 239
Query: 445 NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTL 502
N+ + L G+ EPF +L+ L +L K +I +P GRSM G +DET L
Sbjct: 240 NVSRLTLARGFALTQEPFFRSLLRANIKCTLKKLIAKVQIQVPPHFGRSMFGVMDETGQL 299
Query: 503 NYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNV 562
+GQVFVQ + + + L + S+S + I+ G V++ KNPC+ GDVRV +AV++
Sbjct: 300 QWGQVFVQCTRSIW--------LKTPSKSAAKIILVGKVMLTKNPCIVAGDVRVFEAVDI 351
Query: 563 PALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQS-M 621
P LHH+VD VVFPQ G RPHP+E +GSDLDGD Y V WD EL+ +PP+D+T + S
Sbjct: 352 PELHHLVDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDPELMFEHNEPPLDFTKSASDN 411
Query: 622 QLDHDVQIE-DVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVD 680
++ + Q++ ++ ++F NYI DS+G I+NA V AD SE C+ +A K S AVD
Sbjct: 412 KIVEEEQVDLEMRKFFVNYIKQDSIGTISNAFLVNADL--YGITSEVCINIARKHSKAVD 469
Query: 681 FPKTGVP-------------AEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDI 727
FPKTG I P + +PDFM K +P+Y S ++G+L+R ++ +
Sbjct: 470 FPKTGNAPSPLTRQWTQGKNGNILPPERAERWPDFMCKNHEPSYISSRLVGQLYRRIRLL 529
Query: 728 APHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAE 787
+ V DPD+E G+E + + A +Y + ++M+ YGI+ E +
Sbjct: 530 DDALNLTAAMEGSVT-IMLDPDLEYPGWEQYQNVAKIQLDSYHSHIRSIMENYGIEDEGQ 588
Query: 788 ILTGSIMKMSKSFTKR--------RDAEAIGMAVRALRKEARAWFKEKSGSDTE------ 833
+ +G I + + R I V A+ + R F ++ G E
Sbjct: 589 LFSGFISVIRNRISDRDTDDMSFYNTNHIIEKKVSAVFRAYRHRFFDEFGGFLESTLPDY 648
Query: 834 DDAYAKASAWYHVTYHPD----------YWGCY-NQGMNRDH-FLSFPWCVYDRLVEIKK 881
DD + + + HP Y CY N M+ + LSF W V+D L +K+
Sbjct: 649 DDNQSGNAQERRICIHPSLDMKRKASAYYILCYRNASMDTSYRILSFGWLVWDILCHVKQ 708
Query: 882 DKTSIGNAFPALE 894
+ +G A P ++
Sbjct: 709 E-VRLGRAKPIMQ 720
>gi|341885452|gb|EGT41387.1| hypothetical protein CAEBREN_32717 [Caenorhabditis brenneri]
Length = 1562
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 241/835 (28%), Positives = 389/835 (46%), Gaps = 126/835 (15%)
Query: 118 QYRKYMTSRS-KPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN 176
QY + ++ S + A L V V +V VTPSR+ PE+ + NR++R F D
Sbjct: 653 QYERLLSGESLQDVGLAKPLPKNCVQVAKVIVTPSRILLMAPEVMMVNRIVRRFGPDYA- 711
Query: 177 FLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSS 236
LR F D++L + +S+
Sbjct: 712 -LRCVFRDDNLGR--------------------------------------------WSN 726
Query: 237 SQLRESSAWMFA-------SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 289
SQ+R+ +++A R T EIR+WMG+FRE +V K +R+GQ F+ ++ T+
Sbjct: 727 SQMRDQGCYLYAPRVDPGTGRVSGTVEEIRKWMGDFREAVSVPKMMSRMGQCFTQAQPTV 786
Query: 290 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGY 349
+ + PDV+ + KY FSDG G++S + A + LK+ P + FQ+R+ G+
Sbjct: 787 RLERRHWIVEPDVEGGLS-GKYCFSDGCGRISVKLANHITKILELKETP-ACFQVRFKGF 844
Query: 350 KGVVAADPT-----SSKKLSLRDSMRKY-----ESELTKLDVLAWSKYQPCFLNRQLISL 399
KG++ DPT K+ R S +K+ + + L+V+ ++ P LNR I++
Sbjct: 845 KGILVIDPTIDDIIGMPKVVFRKSQQKFGEGGGDQQDEYLEVVKYAMPSPVCLNRPFITI 904
Query: 400 LSTLG----------IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKE 449
L + I + I +RE + +L + A+E + + + N K
Sbjct: 905 LDQVSAKQSASSHRRITNRIHYYLERELCSLSNMLLNENQAAEELVNRTNLPIDWN--KA 962
Query: 450 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQV 507
G++ +P + ML + ++ +K +IF+P GRSM G +DET L YGQV
Sbjct: 963 SKHAGFRLSKDPLIRSMLFSIYRYNIIHHISKAKIFLPPDLGRSMYGVVDETGLLQYGQV 1022
Query: 508 FVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH 567
F+Q S + RQ S + G V++ KNPC PGDVRV +AV PAL H
Sbjct: 1023 FIQYSQS-IRQT-----------SATPILKTGKVLITKNPCHVPGDVRVFEAVWQPALAH 1070
Query: 568 MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDV 627
+VD VVFP+ G RPHP+E +GSDLDGD Y + WD E++ + M Y + + + D +
Sbjct: 1071 LVDVVVFPRHGPRPHPDEMAGSDLDGDEYSIIWDQEMLLDYNEEAMIYPSSTAPEEDKEP 1130
Query: 628 QIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVP 687
+D+ E+F Y+ DS+G ++NAH +AD E C +A K ++AVDFPK+GVP
Sbjct: 1131 TTDDMVEFFLRYLQQDSIGRMSNAHLTYADLH--GLFHENCRNIALKCAVAVDFPKSGVP 1188
Query: 688 AE-IPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDI----APHTSCIRLFTKEVA 742
AE + + PD+M KP Y S + G+L R + + + + +F E
Sbjct: 1189 AEPLASFEQCEMTPDYMATGGKPMYYSPRLNGQLHRKARKVEEVLEEYETRGSIFEGEYD 1248
Query: 743 RRSYDPDMEV-DGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFT 801
+ D +V G E + A+ + Y ++ L+D YGI+ EA +++G + +
Sbjct: 1249 KIICPDDADVFFGSEAKLVQAMMIRDEYIDRMQQLLDEYGIEDEASVVSGHAASIKRLAG 1308
Query: 802 KRRD-------AEAIGMAVRALRKEARAWFKEKSGSDTE---DDAYA-----------KA 840
RD + + + L RA F E+ G + +D K
Sbjct: 1309 MERDDYSFYHTDKIVELRYEKLYHVFRAKFFEEFGGEAAHLVNDGSKMRLNCTKAMREKV 1368
Query: 841 SAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKD-KTSIGNAFPALE 894
WY V+Y + + + S PW V+D L +++++ S NA P ++
Sbjct: 1369 RQWYFVSYVQPKRNKTGKFIGQ----SLPWVVWDALCDLRRELMVSKTNAIPRVK 1419
>gi|396482889|ref|XP_003841572.1| similar to rna-dependent rna polymerase [Leptosphaeria maculans JN3]
gi|312218147|emb|CBX98093.1| similar to rna-dependent rna polymerase [Leptosphaeria maculans JN3]
Length = 1248
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 203/582 (34%), Positives = 305/582 (52%), Gaps = 40/582 (6%)
Query: 140 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 199
L ++ +TP+ + GP+ +VSNRVLR + + + F+R+ F DED + PR
Sbjct: 442 LALTYKATITPTGMLLRGPDWDVSNRVLRKYGKHTECFMRVFFADEDGLSVF---FDPRA 498
Query: 200 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----SRYGLTA 255
S + R+Y R LRNGI + R+F+FL FS + LR AW + A
Sbjct: 499 S------QDRVYERFRGVLRNGITVAGRRFDFLGFSHASLRSHQAWFMTPFIKDGISICA 552
Query: 256 AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSD 315
+I E +G+F IR A+ AAR+GQ+FS + SV + + + + K+++ + FSD
Sbjct: 553 RDIIEDLGDFSHIRCSARCAARIGQAFSDT--IFSVRVPDSAYVTESKVDVKRNGRYFSD 610
Query: 316 GIGKVSAEFARKV--ASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKY 372
G G +S E RKV A ++ P+ QIRY G KGV++ D + ++L +R SM KY
Sbjct: 611 GCGTISLELMRKVWNALPPERREQRPTVLQIRYRGAKGVLSLDTSLVGEQLHVRQSMTKY 670
Query: 373 ESELTKLDV-LAWSKYQP--CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 429
++ D+ L + Y+P FLN Q I +L LG+ + F+ Q EAV L I P+
Sbjct: 671 IAKEGWKDLELCGAAYKPLTVFLNHQFIKILEDLGVPERNFKAIQNEAVDTLKLITEHPI 730
Query: 430 KAQEALELM--SPGENTNILKELL-ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 486
A LE S T L EL+ G A+ FL+ +++ S L L+ + RI I
Sbjct: 731 NAASFLEYSHSSVYARTPRLFELMHQIGLSFHADRFLTDIVEVAAMSNLRSLKYRARIPI 790
Query: 487 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 546
G + G +DET L G+V+V ++ SR + ++ V++ +
Sbjct: 791 SQGYLLYGIMDETGILKEGEVYVATKS--------HDAIGHKSR---KILIGDRVIITRA 839
Query: 547 PCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
P LHPGDV+++KAV+VP L + +CVVF Q+G R P++ SG DLDGD++ + +D
Sbjct: 840 PALHPGDVQIVKAVDVPEYSPLRALHNCVVFSQQGARDLPSQLSGGDLDGDLFHIIYDSR 899
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
LIP PP DY L VQ+ D+ ++F Y+ D LG I+N H + AD +P
Sbjct: 900 LIPDFTVPPADYKSEPPKDLGRPVQVNDMVDFFVEYMNMDRLGQISNKHKIRADIKPNGT 959
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEY--PDFM 703
R C+ LA+ S AVDF K+G PA+I ++ PDFM
Sbjct: 960 RDPDCILLAQLASDAVDFSKSGNPADINKVPRGSDWIRPDFM 1001
>gi|403346586|gb|EJY72692.1| Rna-dependent RNA polymerase [Oxytricha trifallax]
Length = 1470
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 208/640 (32%), Positives = 327/640 (51%), Gaps = 82/640 (12%)
Query: 145 RVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATD 204
R+ +TP+ Y+ + +NRV+R +R + F+R+SF++E L+K G +D
Sbjct: 561 RLFITPTLDYYQPAYEDETNRVIRQYRDHLSRFVRVSFVNEYLEK---------GYYFSD 611
Query: 205 ITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASR--------YGLTAA 256
+ + L NGI +G+ +FL++S+SQ++ S WM + L
Sbjct: 612 -QMNWLLGYLHHVLVNGIQLGNYVLKFLSYSNSQIKNHSCWMLVESLVPNKDFDFPLNEN 670
Query: 257 EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSD 315
I MG+F + +N+ K AR GQ FS++K L + E+ +PDVK + ++F+D
Sbjct: 671 IIMRSMGDFSQEKNMLKRYARRGQCFSTTKFILQLDKSEVTYNLPDVK----RNGFIFTD 726
Query: 316 GIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYES 374
G G +S E A+ +A + K + SAFQIR+GG KGV+ +P +++ LRDS K++S
Sbjct: 727 GCGYISPELAQLIAEQFSFKRS--SAFQIRFGGTKGVLMLNPRLEGRQIQLRDSQIKFQS 784
Query: 375 ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR--QLDAILTDPLK-A 431
L+V+ Y FLNRQ+I L++ LG+ + +F + QR+A Q+ I + +K
Sbjct: 785 NDLGLNVVRCGTYSQGFLNRQIIILMNCLGVPESVFLELQRKAKEYAQVQEIYNNLIKKT 844
Query: 432 QEALELMSPGENTN----------------------ILKELLICGYKPDAEPFLSMMLQT 469
+A++ +N + LK L+CGY +P S +L T
Sbjct: 845 SKAIKAFKLSQNKSKSLQQITKLINLSLGPSKWFEQSLKTALLCGYNIPNDPIFSSILYT 904
Query: 470 FRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR----------QL 519
+ S + L+ K RI IP+ ++G +DE L +VF+Q+ Y L
Sbjct: 905 MQLSSFMNLKKKARIIIPDSCVLLGIVDEFGILEEDEVFIQVKQDNYSLKKKPWLWDINL 964
Query: 520 HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGM 579
+ + L S+ Q I Q V+V +NPC HPGD+R+LKAVN P L H+ + VVF KG
Sbjct: 965 NNQEELEKDSKPLQ--ICQD-VIVTRNPCTHPGDIRLLKAVNKPELSHLFNVVVFSSKGE 1021
Query: 580 RPHPNECSGSDLDGDIYFVCWDDELIP-----PQQDPPMDYTPAQSMQLDHDVQIEDVEE 634
RP N+ +G DLDGD+YFVCWD ++ Q+P P ++ + + E + +
Sbjct: 1022 RPQCNKMAGGDLDGDVYFVCWDSLILSHIKKENIQEPATYVKP--TLISEQPIDSEHIAD 1079
Query: 635 YFTNYIVNDSLGIIANAHTVFADR----EPRKARSEPCLQLAEKFSIAVDFPKTG--VPA 688
YF Y+ D LG +AN H D+ P K E C +L+ SIAVDF K G V
Sbjct: 1080 YFIFYLQRDVLGKLANMHLALCDQIGVDGPLK---EECQELSALQSIAVDFAKHGESVDK 1136
Query: 689 EIPPHL--YVKEYPDFMEKPDKPTYESQNVIGKLFRAVKD 726
+ HL + +PDF EK ++ S+ V+G L+R + +
Sbjct: 1137 KNFEHLQKMLDNWPDFFEKSNQKMRVSEGVLGMLYRDINN 1176
>gi|345563096|gb|EGX46100.1| hypothetical protein AOL_s00110g264 [Arthrobotrys oligospora ATCC
24927]
Length = 1279
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 207/627 (33%), Positives = 322/627 (51%), Gaps = 63/627 (10%)
Query: 110 EPSRWLTDQYRK----YMTSRSKPSSPAISLD----DGLVYVHRVQVTPSRVYFCGPEIN 161
+P WL++ +K + ++ K + + + V +HR+ +TP+ ++ GP +
Sbjct: 422 DPQIWLSENIQKDFLEALETKQKSQEYMVRMKFYRKENQVLIHRMSITPTGMFPGGPNLE 481
Query: 162 VSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIY-TRILSTL-- 218
NRVLR + +++FLR+S ++ED DL R S D IY R L L
Sbjct: 482 PKNRVLREYHDYLNHFLRVSLVEED-----GGDL--RFESGVD--GKYIYDGRFLPFLMP 532
Query: 219 -RNGILIGDRKFEFLAFSSSQLRESSAWMFAS----RYGLTAAEIREWMGNFREIRNVAK 273
N + I R F+FL FS S LR +AW A+ R +T + E +G+F+ I+ K
Sbjct: 533 ESNLLKIAGRTFKFLGFSQSSLRSHTAWFMATISTPRRTITVDGVIERLGDFKSIKIPGK 592
Query: 274 YAARLGQSFSSSKETLSVHMDEIEIIPD---VKIEIGKTKYVFSDGIGKVSAEFARKVAS 330
AAR+GQ+F+ + ++ +D+ I +KI G KY FSDG G VS +
Sbjct: 593 CAARIGQAFTDT--VANIKIDDFMIAQKRDIIKIAPGGKKYTFSDGCGTVSKPLIELIWK 650
Query: 331 KCGLKDNP-PSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVL--AWSK 386
K +P P+ FQIR+ G KGVVA D T L L DSM K++ K+ + +++K
Sbjct: 651 KGEFTSDPKPTVFQIRFRGAKGVVALDSTQRDPILCLYDSMVKFDGLKNKVFEICRSFTK 710
Query: 387 YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI 446
P +LNR +I +L G+ + F Q A+ L P A L+ + NI
Sbjct: 711 PLPFYLNRCIIKILEDRGVPIKNFMDLQGRALATLRERTFTPDSAAHFLDYQNRCTQANI 770
Query: 447 ---LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN 503
++EL G+ + FL +++ + L +++ + RI + G +++G LDET L
Sbjct: 771 PFLIRELFALGWDYKEDNFLRKVVEFTMLTTLRDMKYRARIQVDKGFTLVGVLDETGYLQ 830
Query: 504 YGQVFVQIS-GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNV 562
G+++ I G R+ H +G+V + +NP LHPGD++++ AV V
Sbjct: 831 EGEIYCPIQREGGKREAH-----------------RGVVAICRNPALHPGDIQIVTAVEV 873
Query: 563 P---ALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQ 619
P L +++CVVF Q+G R P+ SG DLDGDI+ + W+ L+P P D+ +
Sbjct: 874 PYDSPLRDLMNCVVFSQRGQRDLPSMLSGGDLDGDIFHIWWEPSLMPRFSSAPSDFPAVE 933
Query: 620 SMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAV 679
++ D DV D+ ++F +++ ND LG+I+ AH V AD+EP RS CL A S AV
Sbjct: 934 ALNYDRDVTQADIGKFFLDFMENDKLGVISVAHMVLADQEPAGVRSAACLTCARMASQAV 993
Query: 680 DFPKTGVP---AEIPPHLYVKEYPDFM 703
DFPKTGVP +E+P K PDF+
Sbjct: 994 DFPKTGVPVRMSELP--RTPKARPDFL 1018
>gi|328872313|gb|EGG20680.1| RNA-directed RNA polymerase [Dictyostelium fasciculatum]
Length = 2876
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 248/781 (31%), Positives = 377/781 (48%), Gaps = 121/781 (15%)
Query: 141 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 200
VY+ +V VTP+R+ F PEI NR +R F D F+++ F++E+LD H +L +
Sbjct: 1268 VYIKKVFVTPTRIIFQKPEIMQCNRSIRLF--GADRFMQVQFVEENLD--HRIELQQSLA 1323
Query: 201 SATDITRTRIYTRILSTLRNGILI-GDRKFEFLAFSSSQLRESSAWMFASRYGLTAA--- 256
S T+ S ++ GI + G F +L SSSQ R++ +W + A
Sbjct: 1324 SYTN-----------SMMKKGIHVPGFGTFHYLGNSSSQARKNMSWFYCQDKMENAKADG 1372
Query: 257 ---------EIRE-WMGNFREIRNVAKYAARLGQSFSSSKETLSV-HMDEIEIIPDVKIE 305
+R+ +G F N KY + F+S+ ++ + D E IPDV +
Sbjct: 1373 GEEQVYSLDHVRDTLLGEFTNFENPRKYLRAINLVFASTMPSIVIAEEDYHEDIPDVIV- 1431
Query: 306 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL 365
Y F++GIG + + A+KV C + AFQIR GG KGVV P + L
Sbjct: 1432 ---NGYNFTEGIGYIGWKTAQKVNEACEYIQST-CAFQIRIGGNKGVVVVRPDIQNGVYL 1487
Query: 366 RDSMRKYESELTK----LDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL 421
R SM+K+ + + L++++ Y+PC LNRQ+I+LLS LG+ D F +++ +L
Sbjct: 1488 RKSMKKFSTTSNEWSRTLEIVSIPAYKPCTLNRQVINLLSGLGVPDRCFLTLLSQSLNEL 1547
Query: 422 DAILTDPLKAQEAL--ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 479
++L P A+ AL +L + IL ++P + L +L+E R
Sbjct: 1548 ASLLHLPKVAKRALSSDLFDDVSDGEIL-----------SDPMIRGTLHRIYCKRLVEYR 1596
Query: 480 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 539
K I I R+++G D+T +L GQVF+Q+S +GE IV G
Sbjct: 1597 DKCFIPIDTARTLLGVTDDTASLKEGQVFLQVSDE-----NGELQ-----------IVTG 1640
Query: 540 LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVC 599
V VAKNPCLH GDVR+++AV++PALHH+VD V F Q G P ECSGSDLDGD YFV
Sbjct: 1641 PVAVAKNPCLHAGDVRIVQAVDIPALHHLVDVVCFSQNGSVPTFQECSGSDLDGDRYFVL 1700
Query: 600 WDDELIP--PQQDPPMDYTPAQSMQLDHDVQIED---VEEYFTNYIVNDSLGIIANAHTV 654
+D E+I Q D + ++ D D I + +Y TN I +LG+IA AH
Sbjct: 1701 FDREMIGEIKQHDA---FLGEDAVAADSDPTITQSSLIAQYITN-IQKGTLGMIALAHLA 1756
Query: 655 FAD-REPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLY------VKEYPDFMEK-- 705
D P+ + + LA + VD KTGV EIP ++ ++P+FMEK
Sbjct: 1757 VCDVHSPKHPLA---IALAIEHFKEVDRVKTGVGGEIPTDVFQILGEQFDKFPNFMEKSL 1813
Query: 706 PDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYH 765
P K +ES ++G+L+ + + IR F EV DP + G+E + DAI
Sbjct: 1814 PQKSYWESDKILGRLYAQCVSLQ---NVIR-FMPEV---KVDPHLLTPGWETYQADAIET 1866
Query: 766 KGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFK 825
Y +++G+L+ Y I+ E ++L I + ++ + + + M + + F+
Sbjct: 1867 YRRYRHQVGSLLKRYDIENEEDVL---IQYVDETMSGHTLDKVVVMEIFNHYTVIQNTFR 1923
Query: 826 E------KSGSDTEDDAYA--------KASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWC 871
E + +T D K SAWYH Y N+ + + FLSF W
Sbjct: 1924 EQFLRPFQRAGETIDQTITTHQHEIEKKVSAWYHTAYSD------NKKLTK--FLSFYWI 1975
Query: 872 V 872
V
Sbjct: 1976 V 1976
>gi|170584472|ref|XP_001897023.1| RNA dependent RNA polymerase family protein [Brugia malayi]
gi|158595558|gb|EDP34101.1| RNA dependent RNA polymerase family protein [Brugia malayi]
Length = 1542
Score = 299 bits (766), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 253/845 (29%), Positives = 402/845 (47%), Gaps = 147/845 (17%)
Query: 133 AISLDD---GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDK 189
A SL D V + +V TP R+ PE+ ++NRV+RHF + LR F D++ +
Sbjct: 460 AASLSDLPQNCVLIRKVIATPLRLLLLPPEVMMTNRVIRHFGEEYA--LRCVFRDDNGQR 517
Query: 190 IHSTDLSPRGSSATD---ITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM 246
+ + + RG S D I +Y RIL T G+ I R ++FLA+S+SQ+R+ +M
Sbjct: 518 LVPKEFT-RGRSLQDQSLIIPDLVY-RILGT---GLRIASRHYQFLAWSNSQMRDGGCYM 572
Query: 247 FA---------SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIE 297
++ +IR WMG+F + V K +R+GQ F+ ++ T+ + D+ +
Sbjct: 573 YSDAIVNDEVHGEVVCNVEDIRRWMGDFTASKTVPKLMSRMGQCFTQAQPTIKLKKDDWK 632
Query: 298 IIPD-----VKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV 352
+ D V E G+ + FSDG+G++S ++A ++A GL P S +Q+R+ G+KGV
Sbjct: 633 VEDDIMGGIVHPETGEV-FNFSDGVGRISKKYADRIAKTLGLYPTP-SCYQVRFKGFKGV 690
Query: 353 VAADPTSSK----KLSLRDSMRKYESE---LTKLDVLAWSKYQPCFLNRQLISLLSTLGI 405
+ DP + + R S +K+E + +++V+ +S P LNR LI +L
Sbjct: 691 LCIDPLLDELDQVNIVFRKSQKKFEEDDESAAEVEVVKYSMPSPVRLNRPLIMIL----- 745
Query: 406 WDEIFEKKQREA-------VRQLDAILTDPLKAQEALELMSPGENTNILK------ELLI 452
D++ +K+ R + L + D L A E ++ E ++ L +L
Sbjct: 746 -DQVSDKQGRHLHKKVCNRIHSLLELELDKLAAMMFDENVATEELSSRLSLPIDFHQLHS 804
Query: 453 CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP--NGRSMMGCLDETRTLNYGQVFVQ 510
G EPF +L + +K++IF+P GR+M G +D+T L YGQVFVQ
Sbjct: 805 NGITFTNEPFFRSLLTAIHRYNIKLHLSKSKIFLPCSMGRTMYGVIDDTGLLQYGQVFVQ 864
Query: 511 ISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD 570
S + S ++ + G V+V KNPC GDVR+ +AV AL H+ D
Sbjct: 865 YSSS------------MQYVSAKKIVYTGSVMVTKNPCHVAGDVRMFEAVYQDALLHLCD 912
Query: 571 CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIE 630
+VFP+ G RPH +E +GSDLDGD Y V +D EL + M + + +
Sbjct: 913 VIVFPRYGPRPHSDEMAGSDLDGDEYTVIFDKELFFENNERAMFFPNSLPTEYGTPATTG 972
Query: 631 DVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAE- 689
D+ ++F Y+ DS+G ++NAH + E C +A K ++AVDFPKTGV A+
Sbjct: 973 DMIDFFLKYLSQDSIGRMSNAHLII----------EVCDDIARKCAVAVDFPKTGVAAKP 1022
Query: 690 IPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPD 749
+ H + PD+M+ KP+Y S+ ++G+L+R ARR D
Sbjct: 1023 LLSHEQCEVMPDYMQNMIKPSYRSKRLLGELYRK------------------ARRVEDIS 1064
Query: 750 MEVDG--FEDH-----IDDAIYH------------KGNYDYKLGNLMDYYGIKTEAEILT 790
V G F D+ D++++H + Y ++ LMD YGI EA +++
Sbjct: 1065 EIVQGTKFADYCDPQLCDESLFHEQSELIQESLRLRDEYHSRIQQLMDEYGISDEASVIS 1124
Query: 791 GSIMKMSKSFTKRRDAEAIGMA--------VRALRKEARAWFKEKSG-SDTED-DAYA-- 838
G M + + +D + + R +FKE G SD + DA+
Sbjct: 1125 GHSMTIKRIIEMEKDDYSFYNSDKIVELRYSRIFSYFRHEFFKEFGGESDFQTVDAFGKR 1184
Query: 839 ----------KASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTSIGN 888
KA AWY VTY + + F SFPW V+D L+ IK+ + ++
Sbjct: 1185 EMRWNVALIRKAKAWYTVTYTSAF-------RSSSEFRSFPWIVWDILLIIKR-QIALTL 1236
Query: 889 AFPAL 893
PAL
Sbjct: 1237 KSPAL 1241
>gi|451855231|gb|EMD68523.1| hypothetical protein COCSADRAFT_178332 [Cochliobolus sativus ND90Pr]
Length = 1244
Score = 299 bits (766), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 200/584 (34%), Positives = 302/584 (51%), Gaps = 44/584 (7%)
Query: 140 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED-LDKIHSTDLSPR 198
L ++ VTP+ + GP+ +VSNRVLR + + F+R+ F DED L H + S
Sbjct: 445 LALTYKATVTPTGILLRGPDWDVSNRVLRRYTTRTEYFMRVFFADEDGLSVFHDSRAS-- 502
Query: 199 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEI 258
+ ++Y R + L+NGI + R F+FL FS + LR AW F + + + + +
Sbjct: 503 --------QNQVYERFRNVLQNGISVAGRTFQFLGFSHASLRNHQAW-FMAPFEMDGSLV 553
Query: 259 R-----EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 313
R + +G+F I AK AAR+GQ+FS + SV + E + +VK ++ + F
Sbjct: 554 RARNVIQDLGDFSHIHCSAKCAARIGQAFSDT--IFSVPVPETAYVTEVKDDVERNGRTF 611
Query: 314 SDGIGKVSAEFARKV--ASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMR 370
SDG G +S E R V A + P+ QIRY G KGV++ D + S ++L +R SM
Sbjct: 612 SDGCGTISLELLRTVWRALPPERRQQRPTVLQIRYRGAKGVLSLDASLSGQQLHVRKSMT 671
Query: 371 KYESELTKLDV-LAWSKYQP--CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 427
KY ++ T D+ L + Y+P FLN Q I +L LG+ E F Q EAV+ L I
Sbjct: 672 KYIAKETWRDLELCGAAYKPLSVFLNHQFIKILEDLGVPAEKFLDVQDEAVKILKLITEH 731
Query: 428 PLKAQEALELMSP---GENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 484
PL A L + + + + G A+ FL+ +++ S L L+ + RI
Sbjct: 732 PLNAASFLAYSHSCVFAKVPQLFEMMHRIGLSFHADRFLTDIVEVAAMSSLRSLKYRARI 791
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 544
I G + G +DET TL YG+V++ + + ++ +V +VV
Sbjct: 792 PIEKGYLLYGVMDETNTLKYGEVYIATEDHD-----------KTGKLKRSILVGNQIVVT 840
Query: 545 KNPCLHPGDVRVLKAVNVP---ALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWD 601
+ P LHPGDV+++ AV+VP L + +CVVF Q+G R P++ SG DLDGD++ + +D
Sbjct: 841 RAPALHPGDVQLVNAVDVPDDSPLRALHNCVVFSQQGPRDLPSQLSGGDLDGDLFHIIYD 900
Query: 602 DELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPR 661
LIP P +Y + L V+ D+ ++F Y+ D LG I+N H + AD +P
Sbjct: 901 QRLIPAYTVEPAEYDKVPANDLGRPVEANDIVDFFIEYMKMDRLGQISNKHKIRADVKPN 960
Query: 662 KARSEPCLQLAEKFSIAVDFPKTGVPAEIP--PHLYVKEYPDFM 703
R CL LA+ S AVDF KTGVPA++ P PDFM
Sbjct: 961 GTRHPDCLILAKLASDAVDFSKTGVPADMSLIPKGIDHFRPDFM 1004
>gi|330921324|ref|XP_003299375.1| hypothetical protein PTT_10351 [Pyrenophora teres f. teres 0-1]
gi|311326958|gb|EFQ92511.1| hypothetical protein PTT_10351 [Pyrenophora teres f. teres 0-1]
Length = 1237
Score = 299 bits (766), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 203/583 (34%), Positives = 306/583 (52%), Gaps = 41/583 (7%)
Query: 140 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED-LDKIHSTDLSPR 198
L ++ VTP+ + GP+ +VSNR+LR + + F+R+ F DED L H PR
Sbjct: 438 LALTYKATVTPTGILLRGPDWDVSNRILRKYGTRTEYFMRVFFADEDGLSVFHD----PR 493
Query: 199 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----SRYGLT 254
S + +Y R S LRNGI + +R ++FL FS + LR AW A +
Sbjct: 494 AS------QDNVYERFRSVLRNGISVSERTYQFLGFSHASLRTHQAWFMAPFEMNGTRFR 547
Query: 255 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFS 314
A +I +G+F I A+ +AR+GQ+FS + SV + + + K +I + FS
Sbjct: 548 ARDIISDLGDFSHIHCSARCSARIGQAFSDT--IFSVPVSSTAYVTETKPDIVRNGRTFS 605
Query: 315 DGIGKVSAEFARKVASKC--GLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRK 371
DG G +S E RKV + K P+ QIR+ G KGV++ D + + ++L +R SM K
Sbjct: 606 DGCGTISLEILRKVWNTLPPERKTQRPTILQIRFRGAKGVLSLDESLAGEQLHIRQSMTK 665
Query: 372 YESELTKLDV-LAWSKYQP--CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 428
Y ++ T D+ L + Y+P FLN Q I +L LG+ F+ Q EAV L I P
Sbjct: 666 YIAKETWRDLELCGAAYKPLQVFLNHQFIKILEDLGVPARNFKAVQDEAVNALKMITEHP 725
Query: 429 LKAQEALELMSPGENTNI--LKELL-ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 485
L A LE G + L EL+ G A+ FL+ +++ + L L+ + RI
Sbjct: 726 LNAASFLEYSHSGVYAKVPRLFELMHQIGLSFHADRFLTDIVEVAAMTNLRSLKYRARIP 785
Query: 486 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 545
I G + G +DET L GQV+ I+ Y + S + ++R +V +V+ +
Sbjct: 786 IEQGHLLYGIMDETNFLQEGQVY--IATQDYEK-------SGSGKLQRRILVGERIVITR 836
Query: 546 NPCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDD 602
P LHPGDV+++ AV+VPA L + +CVVF Q+G R P++ SG DLDGD++ + +D
Sbjct: 837 APALHPGDVQLVTAVDVPANSSLRALHNCVVFSQRGARDLPSQLSGGDLDGDLFHIIYDQ 896
Query: 603 ELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRK 662
L+P PP DY + L V++ D+ ++F ++ D LG I+N H + AD+
Sbjct: 897 RLVPDFTVPPADYKSNGARDLGRPVEVNDIVDFFIEHMNMDRLGQISNKHKIRADKSTGT 956
Query: 663 ARSEPCLQLAEKFSIAVDFPKTGVPAEIP--PHLYVKEYPDFM 703
E CL LA+ S AVDF K+G+PA+I P + PDFM
Sbjct: 957 KDPE-CLLLAQLASDAVDFSKSGIPADISKIPRGFDHIRPDFM 998
>gi|402590834|gb|EJW84764.1| RNA-dependent RNA polymerase, partial [Wuchereria bancrofti]
Length = 1136
Score = 296 bits (759), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 244/831 (29%), Positives = 395/831 (47%), Gaps = 123/831 (14%)
Query: 126 RSKPSSPAISLDD---GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISF 182
R + A SL D V + +V TP R+ PE+ ++NRV+RHF + LR F
Sbjct: 42 RISDDNEAASLSDLPQNCVLIRKVMATPLRLLLLPPEVMMTNRVIRHFGEEYA--LRCVF 99
Query: 183 IDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRES 242
D++ ++ + + RG S D + I I TL G+ I R ++FLA+S+SQ+R+
Sbjct: 100 RDDNGQRLVPKEFT-RGRSLQDQSLI-IPDLIYRTLGTGLHIASRHYQFLAWSNSQMRDG 157
Query: 243 SAWMFA---------SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHM 293
+M++ +IR WMG+F +NV K +R+GQ F+ ++ T+ +
Sbjct: 158 GCYMYSDATVNDEVHGEMVYNVEDIRRWMGDFTASKNVPKLMSRMGQCFTQAQPTIMLKK 217
Query: 294 DEIEIIPD-----VKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGG 348
D+ ++ D V E G+ + FSDG+G++S ++A ++A GL P S +Q+R+ G
Sbjct: 218 DDWKVEDDILGGIVHPETGEV-FNFSDGVGRISKKYADRIAKTLGLCPTP-SCYQVRFKG 275
Query: 349 YKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDE 408
+KGV+ DP + RK T+++V+ +S P LNR LI +L D+
Sbjct: 276 FKGVLCIDPLLDELDQANIVFRK-----TEVEVVKYSMPSPVCLNRPLIMIL------DQ 324
Query: 409 IFEKKQRE---------------AVRQLDAILTDPLKAQEAL-----------ELMSPG- 441
+ EK+ R + +L A++ D A E L +L S G
Sbjct: 325 VSEKQGRHLHKKVCNRIHSLLELELDKLAAMMFDENIATEELSSRLSLPIDFHQLHSNGI 384
Query: 442 --ENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI--FIP--NGRSMMGC 495
N + LLI ++ + FL++ + A+ ++ +I F+P GR+M G
Sbjct: 385 TFTNEPFFRSLLIAVHRYNISWFLTLYEYSNIATGIIFRIASKQIQNFLPCSMGRTMYGV 444
Query: 496 LDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR 555
+D+T L YGQVF+Q S + L ++ + G V+V KNPC GDVR
Sbjct: 445 IDDTGLLQYGQVFIQYSSSMQYVL------------TKKIVYTGSVMVTKNPCHVAGDVR 492
Query: 556 VLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDY 615
+ +AV AL H+ D +VFP+ G RPH +E +GSDLDGD Y V +D EL + M +
Sbjct: 493 MFEAVYQDALLHLCDVIVFPRYGPRPHSDEMAGSDLDGDEYTVIFDKELFFENNERAMFF 552
Query: 616 TPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKF 675
+ + D+ ++F Y+ DS+G ++NAH + E C +A K
Sbjct: 553 PKSIPSECGTPPTTGDMIDFFLKYLSQDSIGRMSNAHLII----------EICDDIARKC 602
Query: 676 SIAVDFPKTGVPAE-IPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCI 734
++AVDFPKTGV A+ + H + PD+M+ +P+Y S+ ++G+L+R + + + +
Sbjct: 603 AVAVDFPKTGVAAKPLLSHEQCEVMPDYMQNMIRPSYRSKRLLGELYRKARRVEDISEIV 662
Query: 735 R--LFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGS 792
+ F + YD + + E I +++ + Y ++ LMD YGI EA +++G
Sbjct: 663 QGTKFADYCDPQLYDESLFHEQSE-LIQESLRLRDEYHSRIQQLMDEYGISDEASVISGH 721
Query: 793 IMKMSKSFTKRRDAEAIGMA--------VRALRKEARAWFKEKSGSD--TEDDAYA---- 838
M + + +D + + R R +FKE G DA+
Sbjct: 722 SMTIKRIIEMEKDDYSFYHSDKIVELRYSRIFSYFRREFFKEFGGESDFLTVDAFGKREM 781
Query: 839 --------KASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKK 881
KA AWY VT Y F SFPW V+D L+ IK+
Sbjct: 782 RWNMALITKAKAWYAVT--------YTSAFRSSEFRSFPWIVWDILLIIKR 824
>gi|189200837|ref|XP_001936755.1| RNA-dependent RNA polymerase [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187983854|gb|EDU49342.1| RNA-dependent RNA polymerase [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 953
Score = 296 bits (758), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 202/583 (34%), Positives = 302/583 (51%), Gaps = 43/583 (7%)
Query: 140 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED-LDKIHSTDLSPR 198
L ++ VTP+ + GP+ +VSNR+LR + + F+R+ F DED L H PR
Sbjct: 132 LALTYKATVTPTGILLRGPDWDVSNRILRKYGTRTEYFMRVFFADEDGLSVFHD----PR 187
Query: 199 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----SRYGLT 254
S +Y R S L++GI + R ++FL FS + LR AW A +
Sbjct: 188 ASQGN------VYERFRSVLQHGIFVAGRTYQFLGFSHASLRSHQAWFMAPFEMNGTMFR 241
Query: 255 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFS 314
A +I +G+F I A+ +AR+GQ+FS + SV + + + K +I + FS
Sbjct: 242 ARDIISDLGDFSHIHCSARCSARIGQAFSDT--IFSVPVPSTAYVTETKADIARNGRTFS 299
Query: 315 DGIGKVSAEFARKVASKC--GLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRK 371
DG G +S E RKV + K P+ QIR+ G KGV++ D + ++L +R SM K
Sbjct: 300 DGCGTISLEILRKVWNTLPPERKAQRPTILQIRFRGAKGVLSLDESLVGEQLHIRQSMTK 359
Query: 372 YESELTKLDV-LAWSKYQP--CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 428
Y ++ T D+ L + Y+P FLN Q I +L LG+ F+ Q EAV L I P
Sbjct: 360 YIAKETWRDLELCGAAYKPLQVFLNHQFIKILEDLGVPARNFKAVQDEAVNALKMITEHP 419
Query: 429 LKAQEALELMSPGENTNI--LKELL-ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 485
L A LE G + L EL+ G A+ FL+ +++ + L L+ + RI
Sbjct: 420 LNAASFLEYSHSGVYAKVPRLFELMHQIGLSFHADRFLTDIVEVAAMTNLRSLKYRARIP 479
Query: 486 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 545
I G + G +DET L GQV+ I+ Y + S + R+R +V +V+ +
Sbjct: 480 IEQGHLLYGIMDETNFLQEGQVY--IATQDYDK---------SGKLRRRILVGERIVITR 528
Query: 546 NPCLHPGDVRVLKAVNVP---ALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDD 602
P LHPGDV+++ AV+VP +L + +CVVF Q+G R P++ SG DLDGD++ + +D
Sbjct: 529 APALHPGDVQLVTAVDVPEHSSLRALHNCVVFSQRGARDLPSQLSGGDLDGDLFHIIYDQ 588
Query: 603 ELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRK 662
LIP PP DY + L V++ D+ ++F Y+ D LG I+N H + AD+
Sbjct: 589 RLIPDFTMPPADYKSNGAKDLGRPVEVNDIVDFFIEYMNMDRLGQISNKHKIRADKSTGT 648
Query: 663 ARSEPCLQLAEKFSIAVDFPKTGVPAEIP--PHLYVKEYPDFM 703
E CL LA+ S AVDF K+G+ A+I P + PDFM
Sbjct: 649 NDPE-CLLLAQLASDAVDFSKSGISADISKIPRGFDHIRPDFM 690
>gi|409039622|gb|EKM49158.1| hypothetical protein PHACADRAFT_201955 [Phanerochaete carnosa
HHB-10118-sp]
Length = 908
Score = 296 bits (758), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 238/799 (29%), Positives = 367/799 (45%), Gaps = 120/799 (15%)
Query: 140 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD-----KIHSTD 194
L V R VTP+R P SN +LR +D FLR+ F+D+D D + D
Sbjct: 163 LTAVRRCLVTPTRCVLNPPTWETSNEMLRDHEHYVDRFLRVQFVDDDGDFPVVGETLVID 222
Query: 195 LSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLT 254
+G R ++ R+ L +G++I R + F FS SQ +E WM A T
Sbjct: 223 DEMQG-------REGVFARVRRALSDGLVIAGRHYVFATFSESQAKERGCWMIAEDGPFT 275
Query: 255 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFS 314
+ + MG+ + R +AK+AAR S K T++ +D+I+ + YVF+
Sbjct: 276 VSAVLAKMGDLSQERIIAKHAARQRGSMPK-KITINRALDDIK----------RNSYVFT 324
Query: 315 DGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAA---DPTSSKKLSLRDSMRK 371
DG+G S A+ A G + P SA QIR GG KGV+A + ++ LR SM K
Sbjct: 325 DGVGHFSHSLAQACAKTLGYRLIPVSAAQIRIGGAKGVLAVVQDETLGENEVRLRPSMIK 384
Query: 372 YESELTK--LDVLAWSKYQPCFLNRQLISLLSTLGIWDE----IFEKKQREAVRQLDAIL 425
+ + L+++ + Y LNRQ I L+ G+ + IF +++R ++ L++
Sbjct: 385 LQGVKPEPTLNIIKVATYSKATLNRQAILLMEDRGVSSDTLFDIFTQEKRR-IQGLESGF 443
Query: 426 TDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 485
DP++ T L L K +P + + + L +L+ K I
Sbjct: 444 -DPMRLASV--------TTFPLARALRHDIK---DPVVQNVTSLVKCRLLCDLKWKAWIE 491
Query: 486 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 545
+ +MG DET +L G++F QI +G +++ + +
Sbjct: 492 LSESAYLMGIADETDSLQEGEIFCQIHPSG----------------SDPQVIEARCTIYR 535
Query: 546 NPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
NPCLHPGDVR++ AV+ P L H+ + +VF +G R PN +G DLDGD Y + WD L+
Sbjct: 536 NPCLHPGDVRLVTAVDCPKLRHLRNVIVFSTRGCRDLPNMLAGGDLDGDCYSLIWDPRLL 595
Query: 606 PPQ--QDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
P+ + PMDYTP +++ ++ V IE +++F + + ND LG + NAH AD
Sbjct: 596 IPEGGEYEPMDYTPPPAVRSEYPVTIEQTKQHFLDTMKNDVLGRVCNAHMALADLH--GP 653
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKP----------TYES 713
C +LA S AVDF KTGV + ++EYPDFM K K +Y S
Sbjct: 654 SDFQCRELASLASQAVDFSKTGVAVQQSEIPRLEEYPDFMGKEYKSIRIFKKQEIRSYSS 713
Query: 714 QNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDM----EVDGFEDHIDDAIYHKGNY 769
+ V+G++FR + D P +E + DP + E GF +++ +A HK Y
Sbjct: 714 EKVLGRMFREI-DPEP-------IFEEAVELAGDPRLLEAGEETGFREYLQEAAMHKARY 765
Query: 770 DYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVR--------ALRKEAR 821
+++L L+ Y I E E + G +++ K+ K + +AVR A A
Sbjct: 766 EFELTGLLRRYNI-NETECVAGLLLRSPKTRLKVEKDYDLRVAVRDAYSHIIAATIARAD 824
Query: 822 AWFKEKSGS-DTEDDAYAKASAWYHVTYHPDY-------WGCYNQGM-------NRDHF- 865
+ KE S D+ A A A Y +TY +Y WG ++ + D F
Sbjct: 825 GYIKEHPVSEDSTQYRLAWAIAAYKLTYDQEYSTYLKIDWGKVDEAIWGGGYDETLDEFE 884
Query: 866 --------LSFPWCVYDRL 876
LSFPW D L
Sbjct: 885 EVESSERRLSFPWVSADSL 903
>gi|299470095|emb|CBN78124.1| RNA-dependent RNA polymerase 1 [Ectocarpus siliculosus]
Length = 1102
Score = 296 bits (757), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 243/754 (32%), Positives = 351/754 (46%), Gaps = 142/754 (18%)
Query: 139 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIH-STDLSP 197
G V V R VTP RV PE +SN V R F D FL ++F+DE++ ++ S L+P
Sbjct: 260 GNVMVPRASVTPLRVVCQPPEQEMSNGVTRRFAEHSDRFLGVNFVDENMGRLQLSPLLAP 319
Query: 198 RGSSATDITRTRIYTRILSTLR--NGILIGDRKFEF-LAFSSSQLRESSAWMFASRYGLT 254
+ + T R + L+ +L+ + SQLR + + +A G
Sbjct: 320 SDCWSIGLACTPFGQRHQTFLKVHPALLVSCVVLSPPVRPRKSQLRGHACFFYAE--GGE 377
Query: 255 AAEIRE---------WMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE 305
+I E WMG+ I V K+AARLGQS SS+ T+ V +++PD K
Sbjct: 378 VDQISESGSEPAVFHWMGDMSGIDVVGKHAARLGQSLSSTTSTVEVPPALKKLVPDKK-- 435
Query: 306 IGKTKYVFSDGIGKVSAEFARKVASKCG--LKDNPPSAFQIRYGGYKGVVAADPTS---- 359
Y F+DG G +S AR+VA G + PPSAFQIR GG KG++A P S
Sbjct: 436 --AGPYEFTDGCGMMSEGLAREVADVLGHSVSQPPPSAFQIRMGGCKGMLAVWPDSVMRS 493
Query: 360 -----SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQ 414
K+ +R SM+K+ SE L+V+ +++ PC+LNRQ I+LL TLG+ D++ E++
Sbjct: 494 VSGRGGYKVLVRPSMQKFPSERNTLEVIQYARQLPCYLNRQFITLLGTLGVPDKVIEERY 553
Query: 415 REAVRQLDAI----LTDPLKAQEAL----ELMSPGEN----TNILKELLI---CGYKPDA 459
V LD + L+DP +A+ AL + S G+ L E L G
Sbjct: 554 SAMVSTLDKVLRTMLSDPAEAEMALVRYYNITSGGKTGRKQVGPLWEALAMVRAGINIRT 613
Query: 460 EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQL 519
EPFL +L R +++LR +TRIF+P+ ++G +DET L GQ + G R +
Sbjct: 614 EPFLQSVLHATRDKAMIDLRHRTRIFVPDASCLLGIVDETGFLQPGQASDSL---GCRSV 670
Query: 520 HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGM 579
+ ++++R+ M + F Q
Sbjct: 671 NH----YTANRA----------------------------------SIMTNADRFGQ--C 690
Query: 580 RPHPNECSGSDLDGDIYFVCWDDELIPPQQD---------------PPMDYTPAQSMQLD 624
P P++ SG DLDGD+Y V WD +L+PP+++ P M Y P + +
Sbjct: 691 TPEPSKMSGGDLDGDLYSVVWDQDLLPPEREGVAGVQGDSENGFNFPAMGYEPPEKPKTS 750
Query: 625 -----HDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAV 679
V ++++ ++F YI ND+LG IANAH V AD P AR + CLQLA S AV
Sbjct: 751 ASSSGKGVDMKEIADFFLKYIQNDNLGKIANAHLVRADLSPLGARCDECLQLAALHSKAV 810
Query: 680 DFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTK 739
DFPK+GVPA P L V YPDFM K D TY S+ +IG+LFR D P +
Sbjct: 811 DFPKSGVPAVFPDELKVDSYPDFMCKEDNMTYLSKKLIGRLFR---DTPPAGAA------ 861
Query: 740 EVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKS 799
RR + + GFE +D ++ G D+ + E E G ++K
Sbjct: 862 NPQRRQQQDERFLGGFE--LDQSLLAPGYEDFL---------EEAEVERFGGRMLKR--- 907
Query: 800 FTKRRDAEA----------IGMAVRALRKEARAW 823
TK DA+ + M RAL W
Sbjct: 908 -TKLEDAQGRLNLEFLRMFMPMHARALDGRGSVW 940
>gi|452004258|gb|EMD96714.1| hypothetical protein COCHEDRAFT_106396 [Cochliobolus heterostrophus
C5]
Length = 931
Score = 296 bits (757), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 199/584 (34%), Positives = 303/584 (51%), Gaps = 44/584 (7%)
Query: 140 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED-LDKIHSTDLSPR 198
L ++ VTP+ + GP+ +VSNRVLR + + F+R+ F DED L H + S
Sbjct: 132 LALTYKATVTPTGILLRGPDWDVSNRVLRKYSTRTEYFMRVFFADEDGLSVFHDSRAS-- 189
Query: 199 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEI 258
+ ++Y R + L+NGI + R F+FL FS + LR AW F + + + + +
Sbjct: 190 --------QNQVYERFRNVLQNGISVAGRTFQFLGFSHASLRNHQAW-FMAPFEMDGSLV 240
Query: 259 R-----EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 313
R + +G+F I AK AAR+GQ+FS + SV + E + +VK ++ + F
Sbjct: 241 RARNVIQDLGDFSHIHCSAKCAARIGQAFSDT--IFSVPVPETAYVTEVKDDVERNSRTF 298
Query: 314 SDGIGKVSAEFARKV--ASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMR 370
SDG G +S E R V A + P+ QIRY G KGV++ D + S ++L +R SM
Sbjct: 299 SDGCGTISLELLRTVWRALPPERRQQRPTVLQIRYRGAKGVLSLDASLSDQQLHVRKSMT 358
Query: 371 KYESELTKLDV-LAWSKYQP--CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 427
KY ++ T D+ L + Y+P FLN Q I +L LG+ E F Q EAV L I
Sbjct: 359 KYIAKETWRDLELCGAAYKPLSVFLNHQFIKILEDLGVPAENFLHVQDEAVNTLKLITEH 418
Query: 428 PLKAQEALELMSP---GENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 484
PL A L + + + + G A+ FL+ +++ S L L+ + RI
Sbjct: 419 PLNAASFLAYSHSCIFAKVPQLFEMMHRIGLPFHADRFLTDIVEVAAMSSLRSLKYRARI 478
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 544
I G + G +DET TL YG+V++ Q H ++ + ++ +V ++V
Sbjct: 479 PIEKGYLLYGVMDETNTLKYGEVYIAT------QDHDKTG-----KLKRSILVGNQIIVT 527
Query: 545 KNPCLHPGDVRVLKAVNV---PALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWD 601
+ P LHPGD++++ AV+V L + +C+VF Q+G R P++ SG DLDGD++ + +D
Sbjct: 528 RAPALHPGDIQLVDAVDVTDDSPLRALHNCIVFSQQGPRDLPSQLSGGDLDGDLFHIIYD 587
Query: 602 DELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPR 661
LIP P +Y A + L V+ D+ +F Y+ D LG I+N H + AD +P
Sbjct: 588 QRLIPAYTVEPAEYDKAPAKDLGRPVEANDIVGFFIEYMKMDRLGQISNKHKIRADVKPN 647
Query: 662 KARSEPCLQLAEKFSIAVDFPKTGVPAEIP--PHLYVKEYPDFM 703
R CL LA+ S AVDF KTGVPA++ P PDFM
Sbjct: 648 GTRHPDCLTLAKLASDAVDFSKTGVPADMSRIPKGIDHFRPDFM 691
>gi|156045453|ref|XP_001589282.1| hypothetical protein SS1G_09915 [Sclerotinia sclerotiorum 1980]
gi|154694310|gb|EDN94048.1| hypothetical protein SS1G_09915 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1184
Score = 295 bits (755), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 221/696 (31%), Positives = 340/696 (48%), Gaps = 71/696 (10%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
VHRV +TP+ Y GPE +NR+LR + NF+R++F DED +I A
Sbjct: 420 VHRVTITPAGFYLEGPEAESNNRILRKYAGSHGNFVRVNFCDEDGGRIQY---------A 470
Query: 203 TDITRTRIYTRIL-STLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLT----AAE 257
+++ I+ + + L+NG I +K+E+L S S LR S W A + A
Sbjct: 471 SNVANDEIFDGVFKNILKNGFSIASQKYEYLGSSHSSLRTQSCWFVAPFFNKEGYHDAQH 530
Query: 258 IREWMGNFREIRNVAKYAARLGQSFSSSKE--TLSVHMDEIEIIPDVKIEIGKTKYVFSD 315
I +GNF IR+ AK AAR+GQ+FS + TL IE IPDV+ + VFSD
Sbjct: 531 IIHDLGNFTAIRSPAKCAARIGQAFSDTPNAITLDKRTVTIERIPDVE----RNGRVFSD 586
Query: 316 GIGKVSAEFARKVASKC-GLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYE 373
G+G +S K+ K K P+ FQIRY G KG+++ D L LR+SM K++
Sbjct: 587 GVGTMSESLMHKIWEKLPNKKFVKPTCFQIRYQGAKGMISLDTRLPGDHLRLRESMIKFD 646
Query: 374 SELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA 431
++ + Y+P +LNRQ I +L LG+ E F K Q + V +L AI + A
Sbjct: 647 GSISNDLEICGGAYKPLSMYLNRQFIKILEDLGVEPEYFMKLQEKEVTRLRAITANTYNA 706
Query: 432 QEALELMSPGENTNILKELLICGYKP---DAEPFLSMMLQTFRASKLLELRTKTRIFIPN 488
LE G+ + + C Y + FL +L+ +L L+ K RI +
Sbjct: 707 STFLERKRVGDVVLLPYLIEHCSYLNLDFRNDVFLRDVLEMAVLIELRTLKHKARIPVEK 766
Query: 489 GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 548
G + G +DET L G+++ G R +VQ VV+ + P
Sbjct: 767 GYHLHGIMDETGILKEGEIYCCWLEDGKRTT----------------LVQSSVVITRAPA 810
Query: 549 LHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
LHPGDV++ AV+VP+ L + +C+ F QKG R P++ SG DLDGD+Y+V +D E+
Sbjct: 811 LHPGDVQLANAVDVPSNSPLKRLYNCICFSQKGARDLPSQLSGGDLDGDLYYVMFDPEMK 870
Query: 606 PPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARS 665
+ P DY + + V +D+ + F ++ D LG+I+N H V+AD+ +
Sbjct: 871 LKKTVIPADYPRLPPLDIGRSVTQQDMADNFLTFMKTDQLGVISNRHQVYADQNVMGTQC 930
Query: 666 EPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVK 725
+ CL LAE S AVDF KTG+ AE P ++ + E + YESQ G L+RA+
Sbjct: 931 QQCLILAELCSTAVDFSKTGI-AEYAP---IEAMDEEDEVSNIKYYESQKTCGMLYRAID 986
Query: 726 DIAPHTSCIRLFTKEVARRSYDPDMEVDGFE-----------DHI-DDAIYHKGNYDYKL 773
+ RL + + PD+ +E H+ +DA+ K Y+ +
Sbjct: 987 ERQVFEDIQRLDMQA----NDTPDVMQHVWEFVKSRSQGILWQHLRNDAMEIKDIYENNM 1042
Query: 774 GNLMDYYGIK-----TEAEILTGSIMKMSKSFTKRR 804
++M +Y +E E+ G+I+ + S +K++
Sbjct: 1043 LDIMHHYSEHPSRPVSEREVFVGNILGKAGSVSKKQ 1078
>gi|408389379|gb|EKJ68835.1| hypothetical protein FPSE_11001 [Fusarium pseudograminearum CS3096]
Length = 1277
Score = 294 bits (753), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 204/633 (32%), Positives = 315/633 (49%), Gaps = 67/633 (10%)
Query: 141 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 200
++V + VTP+R+ GPE NRVLR + D FLR+ F +ED + P+
Sbjct: 438 IWVFKALVTPTRLLLDGPEAESKNRVLRKYADYNDYFLRVLFCEEDGQDLR---FHPK-- 492
Query: 201 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----SRYGLTAA 256
+ IY++ + +GI I RKF+FL FS S LR SAW A + L +
Sbjct: 493 ----VDNEPIYSQFRRMMDHGIQIAGRKFDFLGFSHSSLRSHSAWFSAPFVDKDHQLQSP 548
Query: 257 E-IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEI--EIIPDVKIEIGKTKYVF 313
E I + +G+FR+IR AK AAR+GQ+FS + + + + I IPDVK E G VF
Sbjct: 549 EAILQALGDFRDIRVPAKCAARIGQAFSETPYAVPISENNIVPRYIPDVKSEDGSR--VF 606
Query: 314 SDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL--RDSMRK 371
SDG+G +S E + + P+ QIR+GG KG+++ D K+ ++SM K
Sbjct: 607 SDGVGTISQEALESIWPYLSMNSAAPTCLQIRWGGCKGMLSLDTRLEGKVFCIRQESMMK 666
Query: 372 YESELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 429
++SE T + + +P LNRQ+I +L +G DE F + Q A+ L + D
Sbjct: 667 FKSEDTGELGICDTASKPLRLVLNRQMIKILEDMGTRDEWFFELQNNALDILRNVTADAT 726
Query: 430 KAQEALELMSPGENTNI---LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 486
LE + G N + +K+L + FL ++ +L L+ K RI +
Sbjct: 727 NTSSFLEHHAIGINMGLPRLVKQLEKMDIDYRRDKFLKAAVEHVVLRELRLLKHKARIPV 786
Query: 487 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 546
NG ++ G +DET L G+V+V Y + +G ++ R + + G ++V ++
Sbjct: 787 DNGVTLFGIMDETGFLKEGEVYVT-----YDKTYGRNN----GRGIKSTLTDGEIIVTRS 837
Query: 547 PCLHPGDVRVLKAVNVP---ALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
P LHPGD++++K V P +L + +C++F QKG R P+ SG DLDGDIY + WD E
Sbjct: 838 PALHPGDIQLVKQVTPPQGHSLRSLQNCIIFSQKGKRDLPSMLSGGDLDGDIYNIIWDPE 897
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
+P + P DY LD V+ +D+ ++F N++ D LG+IA H + AD +
Sbjct: 898 AMPSRVFRPADYPRVTPQPLDRQVEPKDIADFFINFMRTDILGVIATRHVILADYNDLGS 957
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAEI------------------PPHLYVK-------- 697
C+ LAE S AVDF KTG+P + P LY K
Sbjct: 958 IDRDCIALAELHSTAVDFSKTGIPVNVKALPRAPRFRPDFLATAPPLKLYDKGQLAHIGE 1017
Query: 698 ----EYPDFMEKPDKPTYESQNVIGKLFRAVKD 726
+ D M + Y+S+ ++G+L+R V +
Sbjct: 1018 DDEMDNADDMARTKTNYYQSEKILGQLYRNVDE 1050
>gi|402078468|gb|EJT73733.1| RNA-dependent RNA polymerase [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1287
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 201/604 (33%), Positives = 310/604 (51%), Gaps = 43/604 (7%)
Query: 140 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 199
L + R VTP+R+ GPE+ NRVLR D FLR+ F DE S DL
Sbjct: 440 LTNIFRAVVTPTRITLHGPEVETKNRVLRKHPGHQDYFLRVQFCDEG-----SRDLR--- 491
Query: 200 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG------L 253
T ++ R+Y R L +GI + R + FL FS S LR SS W A+ +
Sbjct: 492 -FETGVSVERVYQRFKDVLLSGIRLPGRIYNFLGFSHSSLRTSSVWFCAAFRDKETGKLV 550
Query: 254 TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET--LSVHMD-EIEIIPDVKIEIGKTK 310
I E +G F IR AK AAR+GQ+FS + LS + D I+ +PD+ G+
Sbjct: 551 NHKSIIEGLGEFGHIRCPAKLAARIGQAFSETPSVVPLSGYSDILIKHVPDIYSADGRR- 609
Query: 311 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSM 369
FSDG+G VS E R + + +K N P+ FQIR+ G KG++A D T S K + RDSM
Sbjct: 610 -CFSDGVGSVSEEMMRIIWAHVPMKKNAPTCFQIRHAGCKGMLALDTTLSGKIIYFRDSM 668
Query: 370 RKYES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 427
+K++S + L++ SK P LNRQ+I +L +G + F K Q +++L A+ +
Sbjct: 669 KKFDSIDQEDLEICDTGSKAIPLVLNRQMIKILEDMGADHKWFLKLQSYRLKELQAVTAN 728
Query: 428 PLKAQEALELMSPGENTNILKELL---ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 484
Q L + G+ ++ K + + G +PFL +++ +L L+ K RI
Sbjct: 729 AYNVQTFLHTANVGQPISLGKFIYWAHLNGMDYKKDPFLRGVVEALVLQELRLLKHKARI 788
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 544
+ G+++ G +DET L GQV+V + ++ G S+S V+V
Sbjct: 789 PVSKGKTLFGLIDETGLLREGQVYVTFAS---EKIPGFQKPPRHSQS---------VIVT 836
Query: 545 KNPCLHPGDVRVLKAVNVPALHHMV---DCVVFPQKGMRPHPNECSGSDLDGDIYFVCWD 601
++P LHPGD++++ + P H + + + F + G R P+ SG DLDGDIY + WD
Sbjct: 837 RSPALHPGDIQIVTNIIPPPDHPLAAHRNSIFFSRHGSRDLPSMLSGGDLDGDIYNIIWD 896
Query: 602 DELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPR 661
E++P Q+ P DY+ A + V+ ED+ ++F +++ ND+LG IA H + AD+
Sbjct: 897 KEVLPKQRFHPADYSNAPPQDIGRPVEREDIVQHFVDFMKNDNLGAIATRHMILADQMVE 956
Query: 662 KARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEY-PDFME-KPDKPTYESQNVIGK 719
C +LAE S AVDF KTG+P ++ + PDF+ P ++ ++ +
Sbjct: 957 GTLHPDCQKLAELHSTAVDFSKTGIPVDMKELPRTNRFRPDFLSPGPIANLHDKDEILME 1016
Query: 720 LFRA 723
+RA
Sbjct: 1017 QYRA 1020
>gi|397600982|gb|EJK57779.1| hypothetical protein THAOC_22138 [Thalassiosira oceanica]
Length = 1292
Score = 293 bits (750), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 196/592 (33%), Positives = 308/592 (52%), Gaps = 67/592 (11%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRD----IDNFLRISFIDEDLDKIHSTDLSPR 198
V R+ +TP+R+ G +SNR++R F +D ++F+R++ DE+ DK++S D++
Sbjct: 449 VPRLLLTPTRLVVTGFHFEISNRMIRKFIQDHNFMSESFVRLTLGDENSDKLYSDDIT-- 506
Query: 199 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEI 258
++ RI + GI I + ++FLA+SSSQL+E S W+ + G T +
Sbjct: 507 ---------VQVEERIKEFVLGGIDIVGKHYKFLAYSSSQLKEQSLWLVSPERGWTVDGM 557
Query: 259 REWMGNFREIRNVAKYAARLGQSFS--------SSKETLSVHMDEI-------EIIPDVK 303
RE MG+F + +KYAAR+GQ FS S + MD+ + + D+
Sbjct: 558 RESMGDFSMCKTPSKYAARIGQCFSTTVSVAEGSGSRNIFSAMDKTTDWLRVKDDLEDIT 617
Query: 304 IEIGKTKYVFSDGIGKVSAEFARKVASKC--GLKDNPP-SAFQIRYGGYKGVVAA----- 355
+ SDG+G + E + + G +D SA QIR GG KGV+
Sbjct: 618 SRWNGLEMQHSDGVGLIRKEVLQNAIKQVPFGPRDKTHISAIQIRLGGAKGVLVGWSFDQ 677
Query: 356 -----DPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIF 410
+ + + LR S K+ + L+V+ + P FLNR ++ L S LGI D IF
Sbjct: 678 LNHLKNEIRNFDICLRPSQVKFSAPYMSLEVVNLATRIPYFLNRNVVLLGSHLGIQDGIF 737
Query: 411 EKKQREAVRQLDAILTDPLKAQEALELMSPGENT--NILKELLICGYKPDAEPFLSMMLQ 468
Q+E ++ L+ +L D A L +S + + + L +L+ G KP+ +PFL L
Sbjct: 738 LCLQKEMIQDLNLLLYDADHALRFLPSLSGPDCSLVSTLMSMLLAGMKPNIDPFLFSCLH 797
Query: 469 TFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSS 528
T RA ++ LR K RIF+ +G +MGCLDET + VF+Q+ H S
Sbjct: 798 TTRAHHMMTLRKKARIFVKDGAVLMGCLDETGLVPENSVFIQVK-------HDNGSFKP- 849
Query: 529 SRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSG 588
++G V+V K+P +HPGD+R+L+AVN+P L +M D ++F + G RP ++ SG
Sbjct: 850 --------IEGKVMVTKHPVMHPGDMRMLEAVNIPELKNMKDIIIFSRHGSRPEADKMSG 901
Query: 589 SDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSM-QLDHDVQIEDVEEYFTNYIVNDSLGI 647
SDLDGD++ V WD L Q PM+Y+P ++ Q + + +F + ND+LG
Sbjct: 902 SDLDGDLFAVTWDKRLFLRQSLDPMEYSPPPTLGQETPPINDSSLLAHFVGHAKNDNLGR 961
Query: 648 IANAHTVFADREPRK--ARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVK 697
I+ ++ D K A C++LA+ SIAVDFPK+G+ A +P L +K
Sbjct: 962 IS---MLWLDHAVTKGGAGCHECVRLAKLASIAVDFPKSGISATLPDDLKIK 1010
>gi|347830482|emb|CCD46179.1| similar to rna-dependent rna polymerase [Botryotinia fuckeliana]
Length = 1203
Score = 292 bits (748), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 221/740 (29%), Positives = 360/740 (48%), Gaps = 107/740 (14%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
+HRV +TP+ Y GPE +NR+LR + + NF+R++F DED D++ A
Sbjct: 421 IHRVTITPAGFYLDGPEPESNNRILRKYAGNHSNFVRVTFCDEDGDRLQY---------A 471
Query: 203 TDITRTRIYTRIL-STLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----SRYGLTAAE 257
++ + IY + L++G IG +K+E+L S S LR S W A + A
Sbjct: 472 SNASNDEIYDGVFRKVLQDGFSIGKQKYEYLGSSHSSLRTQSCWFVAPFTQNDIYYDALH 531
Query: 258 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGI 317
I + +G F +IR+ AK AAR+GQ+FS + TL+ +DE + V +I + VFSDG+
Sbjct: 532 ITQDLGRFGDIRSPAKCAARIGQAFSDTPNTLT--LDETVTVETVA-DIERNGRVFSDGV 588
Query: 318 GKVSAEFARKVASKCGLKDN---PPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYE 373
G +S + K+ + L D P+ FQIRY G KG+++ D KL LR+SM K+E
Sbjct: 589 GTMSEKLMEKIWDR--LPDKYLVKPTCFQIRYRGAKGMISLDSRLPGVKLRLRESMIKFE 646
Query: 374 SELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA 431
+ + Y+P +LNRQ I +L LG+ E F + Q + V +L I A
Sbjct: 647 GSTSNDLEICGGAYKPLPMYLNRQFIKILEDLGVEPEYFMRLQAKEVSRLREITASAYNA 706
Query: 432 QEALELMSPGENTNILKELLICG-----YKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 486
L+ G+ + + + C ++ D FL +L+ +L L+ K RI +
Sbjct: 707 STFLQSKRVGDVVLLPQLIEHCSALDLDFRNDL--FLRDILEMTVLIELRTLKHKARIPV 764
Query: 487 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 546
G + G +DET L G+++ G R ++L S+ VV+ +
Sbjct: 765 ERGYHLHGIMDETGILEEGEIYCCWIEDGKR-----TTLVGSN-----------VVITRA 808
Query: 547 PCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
P LHPGD+++ AVNVP+ L+ + +CV F QKG R P++ SG DLDGD+Y+V +D++
Sbjct: 809 PALHPGDIQLANAVNVPSDSPLNRLYNCVCFSQKGARDLPSQLSGGDLDGDLYYVIFDED 868
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
+ + P DY+ + + + V+ ED+ ++F ++ D LG+I+N H V+AD++
Sbjct: 869 MKLKRTVKPADYSRSLPLDIGRPVKQEDMADFFLTFMKTDQLGVISNRHQVYADQDVMGT 928
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAEI------------------PPHLYVKEYPD---- 701
CL+LAE S AVD+ KTG+P ++ PH+ + PD
Sbjct: 929 ECSDCLKLAELCSTAVDYSKTGIPPKLNDPSVPRHSLWRPDFMAPGPHVKISHRPDDRLG 988
Query: 702 ---------FMEKPDKPT----YESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDP 748
M++ D+ T YES+ G+L+RA+ + K + + P
Sbjct: 989 FAEKYIPIEVMDEEDEVTNIKYYESKKACGQLYRAIDE----RKVFEDIQKLNVQANDSP 1044
Query: 749 DMEVDGFE-----------DHI-DDAIYHKGNYDYKLGNLMDYYGIK-----TEAEILTG 791
D+ +E H+ DA+ + YD + ++M Y +E E+ G
Sbjct: 1045 DVIQHMWEFVKSRSQGIQWQHLRKDALEIQEIYDNNMLDIMHQYSEHPTRPISEREVFVG 1104
Query: 792 SIMKMSKSFTKRRDAEAIGM 811
+I+ S +K++ I M
Sbjct: 1105 NILGKVGSVSKKQRELCISM 1124
>gi|389747663|gb|EIM88841.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 890
Score = 292 bits (748), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 198/579 (34%), Positives = 302/579 (52%), Gaps = 56/579 (9%)
Query: 141 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD-----KIHSTDL 195
+ + R V P+R+ P++ SN +LR F+ D FLR+ FI E+ D + + D
Sbjct: 345 MMIRRCLVAPTRLILMPPQMETSNNLLRTFKDHADRFLRVQFIQEESDLTVTRETNEIDD 404
Query: 196 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTA 255
+ +G ++ R+ TL+ GI + RK+ FL F SQL+ WM A + G +
Sbjct: 405 ALQGGRG-------LFARVRRTLKYGIHVAGRKYVFLCFGESQLKSKGCWMIAEKEGFSV 457
Query: 256 AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMD-EIEIIPDV-KIEIGKTKYVF 313
I +WMG+ + R +AK+AAR G S+S+ ++ +D ++E I D+ + + +YVF
Sbjct: 458 QGILKWMGDLDKERVIAKHAARQGLCLSTSR---AIPLDLQVEFIHDITRTDSQGKEYVF 514
Query: 314 SDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYG-GYKGV--VAADPT---SSKKLSLRD 367
+DG+G S E A A G++ + SA Q+RYG G KGV V+ DP + L +RD
Sbjct: 515 TDGMGDCSQEVANVCARFMGIEGDV-SAVQVRYGTGIKGVISVSEDPLMRGNPYTLRVRD 573
Query: 368 SMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIW-DEIFE--KKQREAVRQLDAI 424
SM K++S L+ L + Y P LNRQ+I L+ +LG+ D + + K ++ ++ L+A
Sbjct: 574 SMVKFKSSNPGLNALKVATYSPATLNRQVILLMESLGVSPDTLLDIFKTEKTKIQGLEAS 633
Query: 425 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 484
QE L S L++ L G+K D P ++ +++ + L +L+ K I
Sbjct: 634 F-----GQERLSRASAFP----LEKALDSGFKDD--PLVASIVRLVKCRLLSDLKWKAWI 682
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 544
IP +MG +D T TL G++F QI +SS S +V G
Sbjct: 683 EIPKSAFLMGVVDPTGTLQEGEIFCQIQPP------------NSSPS----VVVGDCTAY 726
Query: 545 KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDEL 604
+NPCLHPGDVR +KAV+ ++ H+ + +VF G RP PN G D+DGD + + WDD
Sbjct: 727 RNPCLHPGDVRSVKAVDYMSMRHLRNVIVFSTLGHRPLPNMMGGGDVDGDFFSLIWDDRF 786
Query: 605 IPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKAR 664
+ PMDYT ++ V ++ +++F ++I ND LG + N H AD
Sbjct: 787 RLGSEYEPMDYTGPTPVKSILPVTVDQTKKFFVDFIRNDLLGAVCNTHMALADEH--GPY 844
Query: 665 SEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFM 703
+ CL+LA S AVDF KTGVP V EYPDFM
Sbjct: 845 HDDCLKLAALASQAVDFVKTGVPVSHNDIPKVDEYPDFM 883
>gi|46109400|ref|XP_381758.1| hypothetical protein FG01582.1 [Gibberella zeae PH-1]
Length = 1467
Score = 292 bits (747), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 198/584 (33%), Positives = 297/584 (50%), Gaps = 44/584 (7%)
Query: 141 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE---DLDKIHSTDLSP 197
++V + VTP+R+ GPE NRVLR + D FLR+ F +E DL D P
Sbjct: 438 IWVFKALVTPTRLLLDGPEAESKNRVLRKYADYNDYFLRVLFCEEGGQDLRFHPKVDNEP 497
Query: 198 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA-----SRYG 252
IY++ + +GI I RKF+FL FS S LR SAW A R
Sbjct: 498 ------------IYSQFRRMMDHGIQIAGRKFDFLGFSHSSLRSHSAWFSAPFIDKDRQL 545
Query: 253 LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEI--EIIPDVKIEIGKTK 310
+ I + +G+FR+IR AK AAR+GQ+FS + + + + I IPDVK E G
Sbjct: 546 QSPEAILQALGDFRDIRVPAKCAARIGQAFSETPYAVPIFENNIVPRYIPDVKSEDGSR- 604
Query: 311 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL--RDS 368
VFSDG+G +S E + + P+ QIR+GG KG+++ D K+ ++S
Sbjct: 605 -VFSDGVGTISQEALEAIWPYLSMNSAAPTCLQIRWGGCKGMLSLDTRLEGKVFCIRQES 663
Query: 369 MRKYESELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT 426
M K++SE T + + +P LNRQ+I +L +G DE F + Q A+ L +
Sbjct: 664 MMKFKSEDTGELGICDTASKPLRLVLNRQMIKILEDMGTRDEWFFELQNNALDILRNVTA 723
Query: 427 DPLKAQEALELMSPGENTNI---LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 483
D LE + G N + +K+L + FL ++ +L L+ K R
Sbjct: 724 DATNTSSFLEHQAIGINMGLPRLVKQLEKMDIDYRRDKFLKAAVEHVVLRELRLLKHKAR 783
Query: 484 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVV 543
I + NG ++ G +DET L G+V+V Y + +G ++ SR + + G ++V
Sbjct: 784 IPVDNGVTLFGIMDETGFLKEGEVYVT-----YDKTYGRNN----SRGIKSTLTDGEIIV 834
Query: 544 AKNPCLHPGDVRVLKAVNVP---ALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCW 600
++P LHPGD++++K V P +L + +C+VF QKG R P+ SG DLDGDIY + W
Sbjct: 835 TRSPALHPGDIQLVKQVTPPQGHSLRSLQNCIVFSQKGKRDLPSMLSGGDLDGDIYNIIW 894
Query: 601 DDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREP 660
D E +P + P DY LD V+ +D+ ++F N++ D LG+IA H + AD
Sbjct: 895 DPEAMPSRVFRPADYPRVTPQPLDRQVEPKDIADFFINFMRTDILGVIATRHVILADYND 954
Query: 661 RKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEY-PDFM 703
+ C+ LAE S AVDF KTG+P + + PDF+
Sbjct: 955 LGSIDRDCIALAELHSTAVDFSKTGIPVNVKALPRAPRFRPDFL 998
>gi|336273462|ref|XP_003351485.1| hypothetical protein SMAC_00026 [Sordaria macrospora k-hell]
Length = 1226
Score = 291 bits (746), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 206/647 (31%), Positives = 324/647 (50%), Gaps = 69/647 (10%)
Query: 132 PAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIH 191
P + GL ++R VTP+R+ GPE+ NR+LR F D+FLR+ F +ED
Sbjct: 403 PNDEIPSGLTKIYRALVTPTRIELHGPELEAMNRILRKFPEHQDHFLRVQFGEED----- 457
Query: 192 STDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FA 248
DL + + D+ IY R L GI +G R + FL FS S LR S W+ F
Sbjct: 458 GQDLFFNSTVSMDV----IYQRFKDVLTKGISVGGRVYRFLGFSHSSLRAHSLWLSAPFI 513
Query: 249 SRYGLTAAE-IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIG 307
L +E I E +G+FR IR+ A+ AAR+GQ+FS + ++S+H I +I ++ G
Sbjct: 514 HNGVLRISENIIEGLGDFRNIRSPARRAARIGQAFSETPYSVSLHDHGIAVIRQNDVKRG 573
Query: 308 KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLR 366
K VFSDG+GK+S + + P+ Q+R+ G KG++A D +++ +R
Sbjct: 574 KR--VFSDGVGKISQGALEVIHREIPASKGYPNCLQVRWAGAKGMLALDARLPGRQICIR 631
Query: 367 DSMRKY----ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD 422
DSM K+ E L D+ SK P LNRQ+I +L +G + F + Q + +++L
Sbjct: 632 DSMEKFRSHDEEHLEICDMA--SKPIPLMLNRQMIKILEDMGAPAKWFVRLQEKELQRLR 689
Query: 423 AILTDPLKAQEALELMSPGENTNI---LKELLICGYKPDAEPFLSMMLQTFRASKLLELR 479
AI L+L G++ ++ LK++ + FL ++++ +L L+
Sbjct: 690 AITNSVHNVAAFLKLQCVGDSVHLGQFLKDVHKMNIDYRKDQFLRGIVESVVLRELRLLK 749
Query: 480 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 539
K RI +P G ++ G +DET L G+V+V R +S G
Sbjct: 750 HKARIPVPRGITLFGVMDETGLLREGEVYVTYETVDDRFKDPPTS--------------G 795
Query: 540 LVVVAKNPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRPHPNECSGSDLDGDIY 596
VVV ++P LHPGD+++ + V PA H + +C+VF Q G R P++ SG DLDGD +
Sbjct: 796 SVVVTRSPALHPGDIQIAQNVIPPAGHPLRELKNCIVFSQNGERDLPSQLSGGDLDGDTF 855
Query: 597 FVCWDDELIPPQQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVF 655
V WD +++ + DY +L+ +++ +D+ ++F ++ D LG+IA H +
Sbjct: 856 NVIWDQKIVSKLETFAAADYPRVTPRELNREIESKDMADFFVEFMKADHLGVIAVRHMIL 915
Query: 656 ADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEI-----PPH---------LYVKEYPD 701
AD + E CL+LAE S AVDF K+G+ +I PP ++ K D
Sbjct: 916 ADVRDQGTGDEDCLKLAELHSQAVDFSKSGIHVDITELPRPPRYRPDLPDVKIHDKSKID 975
Query: 702 FMEKPDKPT------------YESQNVIGKLFRAVKDIAPHTSCIRL 736
E+ KP Y S+ ++GKL+RAV + T I+L
Sbjct: 976 LEEQYLKPDNDDDDDTPRYKYYASKKLLGKLYRAVDETKIWTRDIKL 1022
>gi|154290300|ref|XP_001545747.1| hypothetical protein BC1G_15659 [Botryotinia fuckeliana B05.10]
Length = 1080
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 220/740 (29%), Positives = 360/740 (48%), Gaps = 107/740 (14%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
+HRV +TP+ Y GPE +NR+LR + + NF+R++F DED D++ A
Sbjct: 288 IHRVTITPAGFYLDGPEPESNNRILRKYAGNHSNFVRVTFCDEDGDRLQY---------A 338
Query: 203 TDITRTRIYTRIL-STLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----SRYGLTAAE 257
++ + IY + L++G IG +K+E+L S S LR S W A + A
Sbjct: 339 SNASNDEIYDGVFRKVLQDGFSIGKQKYEYLGSSHSSLRTQSCWFVAPFTQNDIYYDALH 398
Query: 258 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGI 317
I + +G F +IR+ AK AAR+GQ+FS + TL+ +DE + V +I + VFSDG+
Sbjct: 399 ITQDLGRFGDIRSPAKCAARIGQAFSDTPNTLT--LDETVTVETVA-DIERNGRVFSDGV 455
Query: 318 GKVSAEFARKVASKCGLKDN---PPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYE 373
G +S + K+ + L D P+ FQIRY G KG+++ D +L LR+SM K+E
Sbjct: 456 GTMSEKLMEKIWDR--LPDKYLVKPTCFQIRYRGAKGMISLDSRLPGVQLRLRESMIKFE 513
Query: 374 SELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA 431
+ + Y+P +LNRQ I +L LG+ E F + Q + V +L I A
Sbjct: 514 GSTSNDLEICGGAYKPLPMYLNRQFIKILEDLGVEPEYFMRLQAKEVSRLREITASAYNA 573
Query: 432 QEALELMSPGENTNILKELLICG-----YKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 486
L+ G+ + + + C ++ D FL +L+ +L L+ K RI +
Sbjct: 574 STFLQSKRVGDVVLLPQLIEHCSALDLDFRNDL--FLRDILEMTVLIELRTLKHKARIPV 631
Query: 487 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 546
G + G +DET L G+++ G R ++L S+ VV+ +
Sbjct: 632 ERGYHLHGIMDETGILEEGEIYCCWIEDGKR-----TTLVGSN-----------VVITRA 675
Query: 547 PCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
P LHPGD+++ AVNVP+ L+ + +CV F QKG R P++ SG DLDGD+Y+V +D++
Sbjct: 676 PALHPGDIQLANAVNVPSDSPLNRLYNCVCFSQKGARDLPSQLSGGDLDGDLYYVIFDED 735
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
+ + P DY+ + + + V+ ED+ ++F ++ D LG+I+N H V+AD++
Sbjct: 736 MKLKRTVKPADYSRSLPLDIGRPVKQEDMADFFLTFMKTDQLGVISNRHQVYADQDVMGT 795
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAEI------------------PPHLYVKEYPD---- 701
CL+LAE S AVD+ KTG+P ++ PH+ + PD
Sbjct: 796 ECSDCLKLAELCSTAVDYSKTGIPPKLNDPSVPRHSLWRPDFMAPGPHVKISHRPDDRLG 855
Query: 702 ---------FMEKPDKPT----YESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDP 748
M++ D+ T YES+ G+L+RA+ + K + + P
Sbjct: 856 FAEKYIPIEVMDEEDEVTNIKYYESKKACGQLYRAIDE----RKVFEDIQKLNVQANDSP 911
Query: 749 DMEVDGFE-----------DHI-DDAIYHKGNYDYKLGNLMDYYGIK-----TEAEILTG 791
D+ +E H+ DA+ + YD + ++M Y +E E+ G
Sbjct: 912 DVIQHMWEFVKSRSQGIQWQHLRKDALEIQEIYDNNMLDIMHQYSEHPTRPISEREVFVG 971
Query: 792 SIMKMSKSFTKRRDAEAIGM 811
+I+ S +K++ I M
Sbjct: 972 NILGKVGSVSKKQRELCISM 991
>gi|453080014|gb|EMF08066.1| RdRP-domain-containing protein, partial [Mycosphaerella populorum
SO2202]
Length = 446
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 172/440 (39%), Positives = 248/440 (56%), Gaps = 34/440 (7%)
Query: 202 ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 261
A D +++R+ + GI +G R +EFLAF ++Q R+ A+ FAS G+TAA+IR+W
Sbjct: 3 ADDAGMNEVFSRVKRAMAQGINVGGRHYEFLAFGNAQFRDHGAYFFASTTGVTAADIRDW 62
Query: 262 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 321
MG+F IR +AKY +RLGQ FS+++ H +E I DV+ + + F+DG+GK+S
Sbjct: 63 MGDFTSIRIIAKYVSRLGQCFSTTRAI--PHAVNVEKIDDVE----RNGFCFTDGVGKIS 116
Query: 322 AEFARKVASKCGLKDNP---PSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELT 377
AR +A G+ ++ PS FQIR G KGV+A DP K+ +R S +K+ ++
Sbjct: 117 PFLARMIAHHYGMANSEQDYPSVFQIRLAGCKGVLAVDPRLKGMKIQIRPSQQKFPAKSN 176
Query: 378 KLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL 437
L++ S++ LN QLI +LS LG+ DE+F K R + L L Q+ALEL
Sbjct: 177 GLEICRISQFSTASLNVQLILVLSALGVPDEVFLNKLRNMLSDLQEALD---SEQKALEL 233
Query: 438 MSPGENTNILKELLIC----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 493
+ + N + L C G+ +PF+ L+ +R+ L L+ K RIFI G ++
Sbjct: 234 LQKNVDFNQMTISLACMIFDGFMATKDPFVMTCLRLWRSWNLKYLKEKARIFIDQGAFLL 293
Query: 494 GCLDETRTLN---------YGQVFVQISGAGYRQLHGESSLFS-------SSRSRQRFIV 537
GC DE+ TL G + Q S H ES+L + + +V
Sbjct: 294 GCTDESATLRGHFKSVADPNGILKDQQSTEADVDKHDESALPEIFLQIPDAEKPGSYKVV 353
Query: 538 QGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYF 597
G+VV+A+NP LHPGD+RV+KAV+ AL H+ +CVV PQ G R N CSG DLDGD +
Sbjct: 354 TGIVVLARNPSLHPGDIRVVKAVDNAALRHLKNCVVLPQTGDRDVANMCSGGDLDGDDFI 413
Query: 598 VCWDDELIPPQQD-PPMDYT 616
V WD ELIPP+ + PMDYT
Sbjct: 414 VMWDKELIPPEWNHEPMDYT 433
>gi|169625035|ref|XP_001805922.1| hypothetical protein SNOG_15784 [Phaeosphaeria nodorum SN15]
gi|160705585|gb|EAT76879.2| hypothetical protein SNOG_15784 [Phaeosphaeria nodorum SN15]
Length = 1234
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 233/802 (29%), Positives = 370/802 (46%), Gaps = 114/802 (14%)
Query: 138 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 197
D +V H+ +TP+ ++ GP+ + SNR+LR + + D F+R+SF DED + P
Sbjct: 429 DHVVLTHKATITPTGIFLRGPDADTSNRILRKYSQYTDYFMRVSFTDEDGVSVFH---DP 485
Query: 198 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS----RYGL 253
+ S + +Y R LR GI + R FEFL FS + LR W AS +
Sbjct: 486 KAS------QHEVYERFRKILREGIHVAGRHFEFLGFSHASLRCHQVWFMASFIFKGLPI 539
Query: 254 TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 313
A ++ + +G+F A+ AAR+GQ+FS + +V + I + K +I + VF
Sbjct: 540 CARDVIQNLGDFNGFTCSARCAARIGQAFSDT--IFAVQIPSTATILETKEDITRNNRVF 597
Query: 314 SDGIGKVSAEFARKVASKCG--LKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMR 370
SDG G +S E + + K + P+ QIR G KGV++ D + ++L +R SM
Sbjct: 598 SDGCGTMSLELFQLLWRKLNPQQRRKRPTVLQIRCRGAKGVLSLDSSLVGEELHIRKSMT 657
Query: 371 KY--ESELTKLDVLAWSKYQP--CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT 426
K+ SE L++ + + Y+P +LN Q I +L LG+ + F K Q EA +QL+ I+
Sbjct: 658 KFIAGSEWRDLEICS-AAYRPLRVYLNHQFIKILEDLGVPPQNFIKVQNEARKQLELIVK 716
Query: 427 DPLKAQEALELMSPGENTNI---------------LKELL-ICGYKPDAEPFLSMMLQTF 470
PL A + L TNI L EL+ G + FL +++
Sbjct: 717 HPLNAADFLR----KHKTNIRTGYSHSADHAKIPRLFELMHYAGLSFQTDQFLCEIVEVA 772
Query: 471 RASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSR 530
S + +L+ + RI + +G + G +DET TL G+V+V S R
Sbjct: 773 AMSSIRDLKYRARIPVESGHLLYGIMDETNTLKEGEVYVATEDET-----------PSGR 821
Query: 531 SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP---ALHHMVDCVVFPQKGMRPHPNECS 587
+ ++ VVV + P LHPGDV+++ AVNVP L + +C+VF Q+G R P++ S
Sbjct: 822 REKNILIGDRVVVTRAPALHPGDVQLVSAVNVPDGSPLRSLHNCIVFSQQGARDLPSQLS 881
Query: 588 GSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGI 647
G DLDGD++ V WD LIP P DY A L V++ D+ ++F ++ ND LG
Sbjct: 882 GGDLDGDLFHVIWDPLLIPKYTVPAADYAAAAPFNLGRPVEVNDIVDFFIGFMQNDKLGQ 941
Query: 648 IANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPA---EIPPHLYVKEYPDFM- 703
I+N H + AD+ C+ LA+ S AVDF K+GVPA +IP + + PDFM
Sbjct: 942 ISNMHKIRADKRENGTFDSDCILLAKLASDAVDFSKSGVPAKTSDIPRDIDIIR-PDFMA 1000
Query: 704 -----------------------EKPDKPT-----------YESQNVIGKLFRAVKD--- 726
E PD + Y S+ +G L+RA+ +
Sbjct: 1001 PGHNFVINDLGSTELQDLEIEDIEDPDSLSILDHDMSRVRYYRSKKALGHLYRAIDEREF 1060
Query: 727 --------IAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMD 778
A +S L + + D + + + H A + Y++ + ++MD
Sbjct: 1061 FDHMKSDFAAMQSSTPGLSLMQKLEQYIDRETHLVQWAHHTTFAEELREYYEFNMIDIMD 1120
Query: 779 YYGIK-----TEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTE 833
+ TE E+ +G+I+ + + R +A ++ + D E
Sbjct: 1121 TMRVHRRSPLTELEVFSGNILGKKERASTRFIRQANEDVQERFNRDVSGIVSDIVRGDGE 1180
Query: 834 DDAYA--KASAWYHVTYHPDYW 853
DA A +A A + V + W
Sbjct: 1181 GDAEALPRAIACFKVALQTEGW 1202
>gi|302907308|ref|XP_003049617.1| hypothetical protein NECHADRAFT_123067 [Nectria haematococca mpVI
77-13-4]
gi|256730553|gb|EEU43904.1| hypothetical protein NECHADRAFT_123067 [Nectria haematococca mpVI
77-13-4]
Length = 1261
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 209/639 (32%), Positives = 318/639 (49%), Gaps = 69/639 (10%)
Query: 136 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 195
L D V+V + VTP+RV GP+ NRVLR F + D+FLR+ F DED + +
Sbjct: 421 LPDHQVWVFKALVTPTRVLLHGPDAESKNRVLRMFPDNNDSFLRVIFCDEDGQDL---NF 477
Query: 196 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY---- 251
+PR I ++R + +GI I RK+ FL FS S LR SAW FAS +
Sbjct: 478 NPR------IDNEDTFSRYRKVMDDGIDIAGRKYTFLGFSHSSLRSHSAW-FASPFVDGN 530
Query: 252 --GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIEIG 307
T + I E +G+F++IR AK AAR+GQ+FS + + + + I IPD+K G
Sbjct: 531 YQSQTISVILEALGDFQDIRVPAKCAARIGQAFSETPYAVPLFENSITTRHIPDIKTADG 590
Query: 308 KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLR 366
VFSDG+G +S + V ++ P+ QIR+GG KG+++ D K +R
Sbjct: 591 SR--VFSDGVGTISQDALEDVWMYLPMRSAAPTCLQIRWGGCKGMLSLDTRLEGKTFCIR 648
Query: 367 -DSMRKYES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 423
+SM K+ S +LT+L + SK LNRQ+I +L +G ++ F Q +A+ L
Sbjct: 649 KESMMKFPSNDLTELGICDTSSKPLRLVLNRQMIKILEDMGTQNDWFFDLQNKALNVLRG 708
Query: 424 ILTDPLKAQEALELMSPGENTNI---LKELLICGYKPDAEPFLSMMLQTFRASKLLELRT 480
+ LE + G N + +K+L G + FL ++ +L L+
Sbjct: 709 VTASAHNTSTFLEYQTIGVNMGLPKLVKQLDRMGIDYRRDKFLRSAVEHVVLRELRLLKH 768
Query: 481 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL 540
K RI + G ++ G +DET L QV+V Y + +G + R + G+
Sbjct: 769 KARIPVEKGVTLFGVMDETGFLKERQVYVT-----YDKTYG----VKNGRRINATLEDGI 819
Query: 541 VVVAKNPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRPHPNECSGSDLDGDIYF 597
++V ++P LHPGD++V + V P H ++ +C+VF QKG R P++ SG DLDGD+Y
Sbjct: 820 ILVTRSPALHPGDIQVAEMVTPPKGHPLRNLQNCIVFSQKGDRDLPSQLSGGDLDGDLYN 879
Query: 598 VCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFAD 657
+ WD+ +P + P DY + LD V +D+ ++F N++ D LG+IA H + AD
Sbjct: 880 IIWDERAMPEKVFEPADYPRVTPVPLDRPVTPKDIADFFINFMRTDILGMIATRHVMLAD 939
Query: 658 REPRKARSEPCLQLAEKFSIAVDFPKTGVPAEI------------------PPHLY---- 695
C+ LAE S AVDF KTG+P E+ P LY
Sbjct: 940 SHDLGTLHPECISLAEMHSTAVDFSKTGIPVEVKKLPKPPRFRPDFLAMAPPLKLYDLGQ 999
Query: 696 ------VKEY--PDFMEKPDKPTYESQNVIGKLFRAVKD 726
+EY D M + Y+S ++G L+R+V +
Sbjct: 1000 IDHIGDPEEYDEDDMMARAKPKYYKSTKILGHLYRSVDE 1038
>gi|315045169|ref|XP_003171960.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
gi|311344303|gb|EFR03506.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
Length = 1204
Score = 291 bits (744), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 238/812 (29%), Positives = 380/812 (46%), Gaps = 124/812 (15%)
Query: 141 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 200
V VHR VTP +Y GP NR+LR + +ID F+R+ F+DE D + P +
Sbjct: 416 VLVHRAMVTPCGIYLSGPYTETKNRILRKYLDNIDYFIRVEFLDETGDPVF---FDPSAN 472
Query: 201 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTA 255
+ + R ++ GI I R FE+L FS S LR + W F + G L A
Sbjct: 473 -----LESIFHQRFAGVMKRGIEIAGRVFEYLGFSHSSLRSQTCWFAAPFTTANGDYLDA 527
Query: 256 AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFS 314
I +G+F IR+ +K AAR+GQ+FS + ++SV + +++ PDVK + VFS
Sbjct: 528 KTIIGNIGHFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVKMKAPDVK----RNGRVFS 583
Query: 315 DGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKY 372
DG+G +S E ++ ++ L++ P+ FQIR G KG+V+ D + L LR+SM K+
Sbjct: 584 DGVGVISRELMYRIWNEYALRERVKPTVFQIRIAGAKGMVSLDTRKKGEFLMLRESMVKF 643
Query: 373 ESE-LTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 430
++ L +++ A + P +LN Q+I +L LG+ E F + Q++ + L + + +
Sbjct: 644 PTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQLQQDEISFLYSTFSSIER 703
Query: 431 AQEALELMSPGENTNILKELLI----CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 486
A LE SP + L LL+ G + +PFL +++ +L +L+ + RI +
Sbjct: 704 AANFLE-ESPVPRSLRLPWLLLVLKSLGIRYSQDPFLQRVMELTMLLRLRDLKYRARIRV 762
Query: 487 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 546
PN ++ G +DET L +++ ++ + R+ +V+ VV+ ++
Sbjct: 763 PNAVTLYGIMDETGYLKENEIYC---------------VYLAENGRREILVRDNVVITRS 807
Query: 547 PCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
P LHPGDV+V AV+VPA L + +CV F Q G R P+ SG DLDGD+Y + +D
Sbjct: 808 PALHPGDVQVANAVDVPANSPLRKLHNCVAFSQFGTRDLPSMLSGGDLDGDLYNIIYDTR 867
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
L+P + P DY A++ +LD V+ ED+ ++F ++ D LG IA H AD+ R
Sbjct: 868 LLPQKTFSPADYPRAEAKELDRKVETEDIIDFFVTFMQQDQLGRIAITHQAIADQSERGT 927
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAE---IPPHLYVKEYPDFM----------------- 703
CL LA S AVD+ K+G+ + IP V+ PDFM
Sbjct: 928 LDGVCLTLARLHSTAVDYSKSGIAVDVMSIPKAPRVR--PDFMAPSPRIRVEDSIESILR 985
Query: 704 EKPDKPT--------------YESQNVIGKLFRAVK--------------DIAPHTSCIR 735
EK Y+S N++G+L+R++ D S ++
Sbjct: 986 EKESTVQDDDDDDNDRAKIRYYKSHNILGRLYRSIDEQSFLHQLRDAGAVDNNNRNSVLK 1045
Query: 736 LFTKEVARRSYDPDMEVDGFEDHIDDAIYH--KGNYDYKLGNLMDYYGIK------TEAE 787
+ V + EVDGF + I H K Y+ KL L+ Y +E E
Sbjct: 1046 SIWRYV-------ESEVDGFLWNHLTGICHDIKDIYEDKLRELLHKYSSTPLKSSISEYE 1098
Query: 788 ILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEAR-------AWFKEKSGSDTEDDAYAKA 840
+ G+I+ +RRD E +R E + ++ TE + A
Sbjct: 1099 LFVGTILGHGHK-QRRRDKE----NANEMRDEYNRLVEFTISMIRDTESGGTEALERSIA 1153
Query: 841 SAWYHVTYHP--DYWGCYNQGMNRDHFLSFPW 870
W + G + +++ LSFPW
Sbjct: 1154 CFWVAINEQSAGQKAGLRSAHTHQEKLLSFPW 1185
>gi|302510543|ref|XP_003017223.1| hypothetical protein ARB_04100 [Arthroderma benhamiae CBS 112371]
gi|291180794|gb|EFE36578.1| hypothetical protein ARB_04100 [Arthroderma benhamiae CBS 112371]
Length = 1233
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 191/583 (32%), Positives = 307/583 (52%), Gaps = 50/583 (8%)
Query: 141 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 200
V VHR VTP+ +Y GP NR+LR + +ID F+R+ F+DE D + P +
Sbjct: 416 VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGDPVF---FDPSAN 472
Query: 201 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTA 255
+ R ++ GI I R+FEFL FS S LR + W F + G L A
Sbjct: 473 -----LEQIFHQRFAGVMKRGIEIAGREFEFLGFSHSSLRAQTCWFAAPFTTANGDYLNA 527
Query: 256 AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFS 314
I +G F IR+ +K AAR+GQ+FS + ++SV + + + PDVK + +FS
Sbjct: 528 RTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMRAPDVK----RNDRIFS 583
Query: 315 DGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKY 372
DG+G +S + ++ ++ L++ P+ FQIR G KG+V+ D + L LR+SM K+
Sbjct: 584 DGVGVISCDLMHRIWNEYALRERVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESMVKF 643
Query: 373 ESE-LTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 430
++ L +++ A + P +LN Q+I +L LG+ E F + QR+ + L + + +
Sbjct: 644 PTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQLQRDEINFLYSTFSSTER 703
Query: 431 AQEALELMSPGENTNILKELLIC----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 486
A + LE SP + L L + G + +PFL +++ +L +L+ + RI +
Sbjct: 704 AAKFLE-DSPVPRSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKYRARIRV 762
Query: 487 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 546
PN ++ G +DET L +++ ++ R+ +V+ VV+ ++
Sbjct: 763 PNAVTLYGIMDETGYLKENEIYC---------------VYLGENGRREILVRDNVVITRS 807
Query: 547 PCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
P LHPGD++V+ AV+VPA L + +CV F Q G R P+ SG DLDGD+Y + +D
Sbjct: 808 PALHPGDIQVVNAVDVPANSPLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIYDTR 867
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
L+P + PP DY ++ +LD V+ ED+ ++F ++ D LG IA H AD+
Sbjct: 868 LVPRKTIPPADYPRVEAKELDRKVETEDIIDFFVTFMQQDQLGRIATTHQTIADQSEFGT 927
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAE---IPPHLYVKEYPDFM 703
+ CL+LA S+AVD+ K+G+ IP V+ PDFM
Sbjct: 928 LDQACLKLAHLHSVAVDYSKSGIAVNVLSIPRAPRVR--PDFM 968
>gi|380095764|emb|CCC05810.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1230
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 208/655 (31%), Positives = 326/655 (49%), Gaps = 81/655 (12%)
Query: 132 PAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIH 191
P + GL ++R VTP+R+ GPE+ NR+LR F D+FLR+ F +ED
Sbjct: 403 PNDEIPSGLTKIYRALVTPTRIELHGPELEAMNRILRKFPEHQDHFLRVQFGEED----- 457
Query: 192 STDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FA 248
DL + + D+ IY R L GI +G R + FL FS S LR S W+ F
Sbjct: 458 GQDLFFNSTVSMDV----IYQRFKDVLTKGISVGGRVYRFLGFSHSSLRAHSLWLSAPFI 513
Query: 249 SRYGLTAAE-IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIG 307
L +E I E +G+FR IR+ A+ AAR+GQ+FS + ++S+H I +I ++ G
Sbjct: 514 HNGVLRISENIIEGLGDFRNIRSPARRAARIGQAFSETPYSVSLHDHGIAVIRQNDVKRG 573
Query: 308 KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLR 366
K VFSDG+GK+S + + P+ Q+R+ G KG++A D +++ +R
Sbjct: 574 KR--VFSDGVGKISQGALEVIHREIPASKGYPNCLQVRWAGAKGMLALDARLPGRQICIR 631
Query: 367 DSMRKY----ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD 422
DSM K+ E L D+ SK P LNRQ+I +L +G + F + Q + +++L
Sbjct: 632 DSMEKFRSHDEEHLEICDMA--SKPIPLMLNRQMIKILEDMGAPAKWFVRLQEKELQRLR 689
Query: 423 AILTDPLKAQEALELMSPGENTNI---LKELLICGYKPDAEPFLSMMLQTFRASKLLELR 479
AI L+L G++ ++ LK++ + FL ++++ +L L+
Sbjct: 690 AITNSVHNVAAFLKLQCVGDSVHLGQFLKDVHKMNIDYRKDQFLRGIVESVVLRELRLLK 749
Query: 480 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 539
K RI +P G ++ G +DET L G+V+V R +S G
Sbjct: 750 HKARIPVPRGITLFGVMDETGLLREGEVYVTYETVDDRFKDPPTS--------------G 795
Query: 540 LVVVAKNPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRPHPNECSGSDLDGDIY 596
VVV ++P LHPGD+++ + V PA H + +C+VF Q G R P++ SG DLDGD +
Sbjct: 796 SVVVTRSPALHPGDIQIAQNVIPPAGHPLRELKNCIVFSQNGERDLPSQLSGGDLDGDTF 855
Query: 597 FVCWDDELIPPQQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVF 655
V WD +++ + DY +L+ +++ +D+ ++F ++ D LG+IA H +
Sbjct: 856 NVIWDQKIVSKLETFAAADYPRVTPRELNREIESKDMADFFVEFMKADHLGVIAVRHMIL 915
Query: 656 ADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEI-----PPHLYVKEYPDFM-EKPD-- 707
AD + E CL+LAE S AVDF K+G+ +I PP + PDF+ +PD
Sbjct: 916 ADVRDQGTGDEDCLKLAELHSQAVDFSKSGIHVDITELPRPP----RYRPDFLVNRPDVK 971
Query: 708 --------------KPT------------YESQNVIGKLFRAVKDIAPHTSCIRL 736
KP Y S+ ++GKL+RAV + T I+L
Sbjct: 972 IHDKSKIDLEEQYLKPDNDDDDDTPRYKYYASKKLLGKLYRAVDETKIWTRDIKL 1026
>gi|327295881|ref|XP_003232635.1| hypothetical protein TERG_06627 [Trichophyton rubrum CBS 118892]
gi|326464946|gb|EGD90399.1| hypothetical protein TERG_06627 [Trichophyton rubrum CBS 118892]
Length = 1207
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 234/814 (28%), Positives = 382/814 (46%), Gaps = 125/814 (15%)
Query: 141 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIH---STDLSP 197
V VHR VTP+ +Y GP NR+LR + +ID F+R+ F+DE D + +L P
Sbjct: 416 VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGDPVFFDPHANLEP 475
Query: 198 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG-- 252
+ R ++ GI I R FEFL FS S LR + W F + G
Sbjct: 476 I-----------FHQRFAGVMKRGIEIAGRGFEFLGFSHSSLRAQTCWFAAPFTTADGDY 524
Query: 253 LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKY 311
L A I +G F IR+ +K AAR+GQ+FS + ++SV + + + PDVK +
Sbjct: 525 LNARTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMRAPDVK----RNDR 580
Query: 312 VFSDGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSM 369
+FSDG+G +S + ++ ++ L++ P+ FQIR G KG+V+ D + L LR+SM
Sbjct: 581 IFSDGVGVMSRDLMYRIWNEYALREKVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESM 640
Query: 370 RKYESE-LTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 427
K+ ++ L +++ A + P +LN Q+I +L LG+ E F + Q++ + L +
Sbjct: 641 VKFPTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQLQQDEINFLYSTFNS 700
Query: 428 PLKAQEALELMSPGENTNILKELLIC----GYKPDAEPFLSMMLQTFRASKLLELRTKTR 483
+A + LE SP + L L + G + +PFL +++ +L +L+ + R
Sbjct: 701 TERAAKFLE-DSPVPRSLRLPWLFLVLKGLGIRYTRDPFLKRVMELTTLLRLRDLKYRAR 759
Query: 484 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVV 543
I +PN ++ G +DET L +++ ++ R+ +V+ VV+
Sbjct: 760 IRVPNAVTLYGIMDETGYLKENEIYC---------------VYLGENGRREILVRDNVVI 804
Query: 544 AKNPCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCW 600
++P LHPGD++V+ AV+VPA L + +CV F Q G R P+ SG DLDGD+Y + +
Sbjct: 805 TRSPALHPGDIQVVNAVDVPANSPLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIY 864
Query: 601 DDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREP 660
D LIP + PP +Y ++ +LD V+ ED+ ++F ++ D LG IA H AD+
Sbjct: 865 DTRLIPRKTIPPANYPRVEAKELDRKVETEDIIDFFVTFMQQDQLGRIATTHQTIADQSE 924
Query: 661 RKARSEPCLQLAEKFSIAVDFPKTGVPAE---IPPHLYVKEYPDFMEKP----------- 706
+ CL+LA S+AVD+ K+G+ + IP V+ PDFM +
Sbjct: 925 FGTLDQACLKLAHLHSVAVDYSKSGIAVDVLSIPRAPRVR--PDFMAQSPRFRVADSIES 982
Query: 707 ----DKPT-------------------YESQNVIGKLFRAVK--------------DIAP 729
K T Y+S N++G+L+R++ D
Sbjct: 983 IIGEKKSTMQEDDDEDEDDSDRRRIRYYKSNNILGRLYRSIDERSFLCQLRDAGAVDTNT 1042
Query: 730 HTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYH--KGNYDYKLGNLMDYYGIK---- 783
+T+ +R V EVDGF I+H + Y+ +L LM Y
Sbjct: 1043 NTNVLRSIWNYVLS-------EVDGFLWTHLTGIFHDTRDIYEDELRELMRKYSATPLKS 1095
Query: 784 --TEAEILTGSIMKMSKSFTKRRD---AEAIGMAVRALRKEARAWFKEKSGSDTEDDAYA 838
+E E+ G+I+ +RRD A+ + L + + ++ TE +
Sbjct: 1096 SISEYELFVGTILGHGHK-QRRRDKDNAKEMRDEYNRLVEFTISMIRDTESGGTEALERS 1154
Query: 839 KASAWYHVTYHPDYW--GCYNQGMNRDHFLSFPW 870
A W + G + +++ LSFPW
Sbjct: 1155 IACFWVAINGKSSGQKPGLRSAHAHQEKLLSFPW 1188
>gi|342878783|gb|EGU80072.1| hypothetical protein FOXB_09347 [Fusarium oxysporum Fo5176]
Length = 1277
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 200/608 (32%), Positives = 305/608 (50%), Gaps = 49/608 (8%)
Query: 133 AISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS 192
+ + D +Y+ + VTP+RV GPE + NRVLR + + D FLR+ F +ED +
Sbjct: 429 GVKIPDHQIYIFKAMVTPTRVLLSGPEPDSKNRVLRKYHENNDYFLRVLFCEEDGQDL-- 486
Query: 193 TDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA---- 248
+ P+ + I+ R + GI I RKF+FL FS S LR SAW A
Sbjct: 487 -NFHPK------VDNEPIFARFRHVMDEGITIAGRKFDFLGFSHSSLRSHSAWFSAPFTD 539
Query: 249 SRYG-LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEI--EIIPDVKIE 305
S + T A I + +G+F EIR AK AAR+GQ+FS + + + I IPDVK E
Sbjct: 540 SNFERQTPAAILQALGDFSEIRVPAKCAARIGQAFSETPYAIPIFETGICHRFIPDVKSE 599
Query: 306 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL 365
G VFSDG+G +S E ++ ++ P+ QIR+GG KG+++ D ++
Sbjct: 600 DGTR--VFSDGVGTISREALEEIWPYLSMRAAAPTCLQIRWGGCKGMLSLDTRLKGRVFC 657
Query: 366 --RDSMRKYESE-LTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL 421
++SM K+ S+ L +L + A SK LNRQ+I +L +G ++ F + Q A+ L
Sbjct: 658 IRQESMMKFPSDDLRELGICDASSKPLRLVLNRQMIKILEDMGTTNDWFFRLQNNALDIL 717
Query: 422 DAILTDPLKAQEALELMSPGENTNI---LKELLICGYKPDAEPFLSMMLQTFRASKLLEL 478
D L+ + G N + +K+L G + FL ++ +L L
Sbjct: 718 RNATADATNTSYFLDYQAIGVNMGLPKLVKQLEKMGIDYRRDKFLKSAVEHVVFRELRLL 777
Query: 479 RTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ 538
+ K RI + G ++ G +DET L+ +VFV Y + HG R +
Sbjct: 778 KHKARIPVDKGVTLFGVMDETGFLDADEVFVT-----YDKTHG----VYRGRRINSTLKD 828
Query: 539 GLVVVAKNPCLHPGDVRVLKAVNVP---ALHHMVDCVVFPQKGMRPHPNECSGSDLDGDI 595
G ++V ++P LHPGD++++ V P +L + +C+VF QKG R P+ SG DLDGD+
Sbjct: 829 GQIIVTRSPALHPGDIQIVNQVTPPQGHSLRSLQNCIVFSQKGKRDLPSMLSGGDLDGDL 888
Query: 596 YFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVF 655
Y + WD + +P P DY + LD V+ +D+ ++F +++ D LG+IA H V
Sbjct: 889 YNIIWDPDALPDNYFLPADYPRVKPKPLDRPVKPQDIADFFVDFMRTDILGMIATRHVVL 948
Query: 656 ADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEI------PPHLYVKEYPDFM-EKPDK 708
AD + C+ LA S AVDF KTG+P ++ PP PDF+ P
Sbjct: 949 ADYHEQGTTHPDCISLAGMHSTAVDFSKTGIPVDVKALPKNPPF-----RPDFLAAAPPL 1003
Query: 709 PTYESQNV 716
TYE +
Sbjct: 1004 KTYEKGQI 1011
>gi|358366477|dbj|GAA83098.1| rna-dependent rna polymerase [Aspergillus kawachii IFO 4308]
Length = 1212
Score = 289 bits (740), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 200/697 (28%), Positives = 333/697 (47%), Gaps = 68/697 (9%)
Query: 39 DLVPIVGPPDGI-------------------ALPYEILFKINLLVQNGCVAGPLLDSNFY 79
D++PI PP G +LP+ ILF++ L N + + S
Sbjct: 283 DILPINTPPKGAFQVQLKALMDELATCTRNNSLPFGILFQLQALAYNAYLLPRTVQSLTQ 342
Query: 80 RLVDPYR-------APVSISCIEHALDKL----YHLKECCYEPSRWLT--DQYRKYMTSR 126
LV YR P+S+ ++ D + H YE + Q +K +
Sbjct: 343 ELVKAYREDTAAQRKPISVLALKKLFDMIDWPSPHSNPTDYEVGALMAALKQNQKDVLQD 402
Query: 127 SKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED 186
S + + L +H+V VTP+RV GPE+ NR+LR F + D F+R+ F DE+
Sbjct: 403 LAVSGDILGPSENLTPIHKVMVTPTRVTLHGPELEPRNRILRRFPKHHDFFIRVQFCDEN 462
Query: 187 LDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM 246
+H + + +++R S L GI I R + FL +S S LR + W
Sbjct: 463 GQDLHFN---------SRVHYDDVFSRFKSVLTRGIQIAGRTYSFLGWSHSSLRSHAVWF 513
Query: 247 ---FASRYGL--TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPD 301
F G T I + +G+F +I++ A+ AAR+GQ+F+ + +S+ +I +
Sbjct: 514 SSPFVDESGQFQTHFSIIKALGDFSKIQSPARCAARIGQAFTDTHYAISLSEYDINVSEV 573
Query: 302 VKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSS 360
+ K VFSDG+G +S + A + K P+ FQ+R GG KG++A D S
Sbjct: 574 ADVTSNDGKRVFSDGVGTLSWDVAETIWHHIPEKKGLPTCFQVRLGGAKGMLAVDGRLSG 633
Query: 361 KKLSLRDSMRKYESELTKLDVLAWS-KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 419
++++R SM K++ ++ L++ + K LNRQ+I +L +G DE F Q A+
Sbjct: 634 SQVNIRPSMIKFQGDMKDLEICDMAAKPMGLVLNRQMIKILEDMGTPDEWFITLQEAALT 693
Query: 420 QLDAILTDPLKAQEALELMSPGENTNILKELLICGYKP---DAEPFLSMMLQTFRASKLL 476
+L ++ ++ ++ + G++ + + C + EPF+ +++ +L
Sbjct: 694 KLRSVTASAHNSEVFIKKQAVGDSIGLYRLFRHCHLRDLDYKKEPFIRSVVEAVVLKELR 753
Query: 477 ELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFI 536
L+ K RI + G ++ G +DET L QV+V Y + G + +S
Sbjct: 754 LLKHKARIPVFKGITLFGVMDETGLLEAEQVYVT-----YEPVEGRHAPPPNS------- 801
Query: 537 VQGLVVVAKNPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRPHPNECSGSDLDG 593
G V+V ++P LH GD++ + V P H + +C+VF KG R P++ SG DLDG
Sbjct: 802 --GTVLVTRSPALHDGDIQYAQNVIPPDNHPLAELTNCIVFSSKGYRDLPSQLSGGDLDG 859
Query: 594 DIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHT 653
DI+ V WD + P + P DY + + V+ +D+ ++F +++ D LG+IA H
Sbjct: 860 DIFNVIWDTDAYPVRTFAPADYPRVSPVDIGRPVERDDMAQFFLDFMKTDHLGMIATRHM 919
Query: 654 VFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEI 690
+ AD+E C QLA+ S AVDF KTG+P ++
Sbjct: 920 IMADQEEEGTSHPVCRQLAQLHSTAVDFSKTGIPVQL 956
>gi|429863873|gb|ELA38280.1| RNA-dependent RNA polymerase [Colletotrichum gloeosporioides Nara
gc5]
Length = 1308
Score = 289 bits (739), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 229/750 (30%), Positives = 361/750 (48%), Gaps = 100/750 (13%)
Query: 51 ALPYEILFKINLLVQNGC----VAGPLL--DSNFYRLVDPYRAPVSISCIEHALDKLYH- 103
ALP+ ILF + LV N VA LL +R + P +S + AL L
Sbjct: 328 ALPFRILFLMQSLVWNNYLHPRVAYDLLLKIEILFRQARKAKRPDPLS--DQALQSLRDG 385
Query: 104 LKECCYEPS--------------RWLTDQYRKYMTS---RSKPSSPAISLDDGLVYVHRV 146
+EC P+ ++L + R+ RS P +S + +V +
Sbjct: 386 PRECLPFPTHDIHPNVLDPDEILKFLLEMERRIQAEGDYRSTLYGPDVS--NHHAWVFKA 443
Query: 147 QVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL--SPRGSSATD 204
VTP+RV GPE+ NR+LR R D F+R+ F DED TDL +PR
Sbjct: 444 MVTPTRVTLHGPEMEPLNRILRKHRNHTDYFMRVQFCDED-----GTDLWFNPR------ 492
Query: 205 ITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW--- 261
+ ++ R + L GI + R ++FL FS S LR +AW F + + + E++ +
Sbjct: 493 VNYEDVFERYKNVLNKGIQVAGRIYQFLGFSHSSLRSHAAW-FMAPFVDDSGEMQLYRHI 551
Query: 262 ---MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIEIGKTKYVFSDG 316
+G+F I+ AK AAR+GQ+FS + +S+ +I IPD+K IG VFSDG
Sbjct: 552 IKSLGDFEHIQIPAKCAARIGQTFSETPAFISLTDSDISAWNIPDIKSSIGGDDRVFSDG 611
Query: 317 IGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL--RDSMRKYES 374
+G +S E + + P+ QIR+GG KG+++ D ++ R+SM K+ S
Sbjct: 612 VGTISREALELIWPRLPRGSLIPTCLQIRWGGVKGMLSLDTRLPGRVMCIRRESMEKFPS 671
Query: 375 ELTK-LDVLAW-SKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 432
+ T+ L++ SK LNRQ+I +L LG+ ++ F + Q+ + +L A+ D
Sbjct: 672 QDTENLEICGGASKPLKLVLNRQMIKILEDLGVRNDFFLRLQKTELDRLRAVTADAYNTG 731
Query: 433 EALELMSPGENT---NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 489
L + G N + +K L G + FL ++Q +L L+ K RI +P G
Sbjct: 732 TFLHMQGIGLNCFLPSFIKSLDKYGIDYRRDDFLRTVVQNVVLQELRLLKHKARIPVPKG 791
Query: 490 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 549
++ G +DET L G+V+ I+ YR+ G +S+ S R G V+V ++P L
Sbjct: 792 VTVFGVMDETGFLREGEVY--IAYDTYRR-PGRTSIDGSLRD-------GPVLVTRSPAL 841
Query: 550 HPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIP 606
HPGD++++K PA H ++ +C+ F Q G R P++ SG DLDGD+Y + WD + +P
Sbjct: 842 HPGDIQLVKMRTPPAGHPLRNLRNCIAFSQFGRRDLPSQLSGGDLDGDLYNIIWDRDAMP 901
Query: 607 PQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSE 666
DY L V+ ED+ +F +++ +D LG+IA H V +D++P
Sbjct: 902 KVTYKAADYPRVTPAALGRTVEREDMANWFVDFMQSDCLGLIATRHLVVSDQDPNGTLGN 961
Query: 667 PCLQLAEKFSIAVDFPKTGVPAEI------------------PPHLYVKEYPDFMEK--- 705
CL LA S AVDF KTG+P + P H++ + +F+ K
Sbjct: 962 DCLTLAGLHSTAVDFSKTGIPVDTKEIPKAPRFRPDFLAPAPPAHIFDRNEIEFIGKNET 1021
Query: 706 ---------PDKPTYESQNVIGKLFRAVKD 726
P Y+S+ ++G L+R V +
Sbjct: 1022 LEEDDEDMLPPHQYYKSEKILGILYRNVDE 1051
>gi|115437172|ref|NP_001043229.1| Os01g0527600 [Oryza sativa Japonica Group]
gi|113532760|dbj|BAF05143.1| Os01g0527600, partial [Oryza sativa Japonica Group]
Length = 385
Score = 288 bits (737), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 162/364 (44%), Positives = 227/364 (62%), Gaps = 25/364 (6%)
Query: 537 VQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIY 596
+ G VV+AKNPCLHPGDVR+L+AV+VP LHH+VDC+VFPQKG RPH NE SGSDLDGD+Y
Sbjct: 1 ILGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLY 60
Query: 597 FVCWDDELIPPQQDP--PMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTV 654
FV WD++LIPP + PMDY+P ++ QL V D+ ++F +++++LG I NAH V
Sbjct: 61 FVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVV 120
Query: 655 FADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQ 714
AD A E C+ LAE + AVDFPKTG A +PPHL K YPDFM K D +Y+S+
Sbjct: 121 HADLSEYGAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSE 180
Query: 715 NVIGKLFRAVKDIAPHTSCIRLFTKEVARRS---YDPDMEVDGFEDHIDDAIYHKGNYDY 771
++G+L+R++++ S + ++EV + YD D+EV G D + A K +YD
Sbjct: 181 KILGRLYRSIQE----ASNGDVVSQEVCTPNDLPYDIDLEVPGASDFLASAWQCKCSYDA 236
Query: 772 KLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD--AEAIGMAVRALRKEARAWFKEKS- 828
+L L+ Y ++TEAE++TG I + K+ +K++ + + A ALRKE ++ F+ +
Sbjct: 237 QLSALLSQYRVRTEAELVTGHITFLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIAS 296
Query: 829 -----GSDTEDDAY-AKASAWYHVTYHPDYWGCYNQGM------NRDHFLSFPWCVYDRL 876
G D ++ Y KASAWY VTYHP W ++G+ LSF W D L
Sbjct: 297 DQCEIGDDEKNLLYEMKASAWYQVTYHPK-WVEKSRGILGPDGEEIPASLSFAWIPVDYL 355
Query: 877 VEIK 880
IK
Sbjct: 356 ARIK 359
>gi|326484092|gb|EGE08102.1| RNA-dependent RNA polymerase [Trichophyton equinum CBS 127.97]
Length = 1207
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 230/811 (28%), Positives = 376/811 (46%), Gaps = 119/811 (14%)
Query: 141 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 200
V VHR VTP+ +Y GP NR+LR + +ID F+R+ F+DE D + P +
Sbjct: 416 VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGDPVF---FDPSAN 472
Query: 201 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTA 255
+ R ++ G I R+FEFL FS S LR + W F + G L A
Sbjct: 473 -----LEQIFHQRFAGVMKRGFEIAGREFEFLGFSHSSLRAQTCWFAAPFTTANGDHLNA 527
Query: 256 AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFS 314
I +G F IR+ +K AAR+GQ+FS + ++SV + + + PDVK + +FS
Sbjct: 528 RTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMKAPDVK----RNDRIFS 583
Query: 315 DGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKY 372
DG+G +S + ++ ++ L++ P+ FQIR G KG+V+ D + L LR+SM K+
Sbjct: 584 DGVGVISRDLMYRIWNEYALRERVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESMVKF 643
Query: 373 ESE-LTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 430
++ L +++ A + P +LN Q+I +L LG+ E F + Q++ + L + +
Sbjct: 644 PTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQIQQDEINFLYSTFNSTER 703
Query: 431 AQEALELMSPGENTNILKELLIC----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 486
A + LE SP + L L + G + +PFL +++ +L +L+ + RI +
Sbjct: 704 AAKFLE-DSPVPRSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKYRARIRV 762
Query: 487 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 546
PN ++ G +DET L +++ ++ R+ +V+ VV+ ++
Sbjct: 763 PNAVTLYGIMDETGYLKENEIYC---------------VYLGENGRREILVRDKVVITRS 807
Query: 547 PCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
P LHPGD++V+ AV+VP L + +CV F Q G R P+ SG DLDGD+Y + +D
Sbjct: 808 PALHPGDIQVVNAVDVPENSPLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIYDTR 867
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
L+P + PP +Y ++ +LD V+ ED+ ++F ++ D LG IA H AD+
Sbjct: 868 LVPRKTIPPANYPRVEAKELDRKVETEDIVDFFVTFMQQDQLGRIATTHQTIADQSELGT 927
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAE---IPPHLYVKEYPDFMEKPDK------------ 708
+ CL+LA S+AVD+ K+G+ IP V+ PDFM +
Sbjct: 928 LDQACLKLAHLHSVAVDYSKSGIAVNVLSIPRAPRVR--PDFMAPSPRFRVADSIESIIG 985
Query: 709 ----------------------PTYESQNVIGKLFRAV--------------KDIAPHTS 732
Y+S N++G+L+R++ D +T
Sbjct: 986 EKNSAMQDDDDDDEDDSDRRKIRYYKSNNILGRLYRSIDERSFLCQLRDVGAADTKTNTD 1045
Query: 733 CIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYH--KGNYDYKLGNLMDYYGIK------T 784
+R V EVDGF I+H + Y+ +L LM Y T
Sbjct: 1046 VLRSIWNYVLS-------EVDGFLWTHLTGIFHDTRDIYEDELRELMRKYSATPLKSSIT 1098
Query: 785 EAEILTGSIMKMSKSFTKRRD---AEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKAS 841
E E+ G+I+ +RRD A+ + L + + ++ TE + A
Sbjct: 1099 EYELFVGTILGHGNK-QRRRDKDNAKEMRDEYNRLVEFTISMIRDTESGGTEALERSIAC 1157
Query: 842 AWYHVTYHPDYW--GCYNQGMNRDHFLSFPW 870
W + G + ++D LSFPW
Sbjct: 1158 FWVAIDGKSSGQKPGLRSAHAHQDKLLSFPW 1188
>gi|326476492|gb|EGE00502.1| hypothetical protein TESG_07807 [Trichophyton tonsurans CBS 112818]
Length = 1207
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 230/811 (28%), Positives = 376/811 (46%), Gaps = 119/811 (14%)
Query: 141 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 200
V VHR VTP+ +Y GP NR+LR + +ID F+R+ F+DE D + P +
Sbjct: 416 VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGDPVF---FDPSAN 472
Query: 201 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTA 255
+ R ++ G I R+FEFL FS S LR + W F + G L A
Sbjct: 473 -----LEQIFHQRFAGVMKRGFEIAGREFEFLGFSHSSLRAQTCWFAAPFTTSNGDHLNA 527
Query: 256 AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFS 314
I +G F IR+ +K AAR+GQ+FS + ++SV + + + PDVK + +FS
Sbjct: 528 RTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMKAPDVK----RNDRIFS 583
Query: 315 DGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKY 372
DG+G +S + ++ ++ L++ P+ FQIR G KG+V+ D + L LR+SM K+
Sbjct: 584 DGVGVISRDLMYRIWNEYALRERVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESMVKF 643
Query: 373 ESE-LTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 430
++ L +++ A + P +LN Q+I +L LG+ E F + Q++ + L + +
Sbjct: 644 PTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQIQQDEINFLYSAFNSTER 703
Query: 431 AQEALELMSPGENTNILKELLIC----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 486
A + LE SP + L L + G + +PFL +++ +L +L+ + RI +
Sbjct: 704 AAKFLE-DSPVPRSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKYRARIRV 762
Query: 487 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 546
PN ++ G +DET L +++ ++ R+ +V+ VV+ ++
Sbjct: 763 PNAVTLYGIMDETGYLKENEIYC---------------VYLGENGRREILVRDKVVITRS 807
Query: 547 PCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
P LHPGD++V+ AV+VP L + +CV F Q G R P+ SG DLDGD+Y + +D
Sbjct: 808 PALHPGDIQVVNAVDVPENSPLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIYDTR 867
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
L+P + PP +Y ++ +LD V+ ED+ ++F ++ D LG IA H AD+
Sbjct: 868 LVPRKTIPPANYPRVEAKELDRKVETEDIVDFFVTFMQQDQLGRIATTHQTIADQSELGT 927
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAE---IPPHLYVKEYPDFMEKPDK------------ 708
+ CL+LA S+AVD+ K+G+ IP V+ PDFM +
Sbjct: 928 LDQACLKLAHLHSVAVDYSKSGIAVNVLSIPRAPRVR--PDFMAPSPRFRVADSIESIIG 985
Query: 709 ----------------------PTYESQNVIGKLFRAV--------------KDIAPHTS 732
Y+S N++G+L+R++ D +T
Sbjct: 986 EKNSAMQDDDDDDEDDSDRRKIRYYKSNNILGRLYRSIDERSFLCQLRDVGAADTKTNTD 1045
Query: 733 CIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYH--KGNYDYKLGNLMDYYGIK------T 784
+R V EVDGF I+H + Y+ +L LM Y T
Sbjct: 1046 VLRSIWNYVLS-------EVDGFLWTHLTGIFHDTRDIYEDELRELMRKYSATPLKSSIT 1098
Query: 785 EAEILTGSIMKMSKSFTKRRD---AEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKAS 841
E E+ G+I+ +RRD A+ + L + + ++ TE + A
Sbjct: 1099 EYELFVGTILGHGNK-QRRRDKDNAKEMRDEYNRLVEFTISMIRDTESGGTEALERSIAC 1157
Query: 842 AWYHVTYHPDYW--GCYNQGMNRDHFLSFPW 870
W + G + ++D LSFPW
Sbjct: 1158 FWVAIDGKSSGQKPGLRSAHAHQDKLLSFPW 1188
>gi|302660624|ref|XP_003021989.1| hypothetical protein TRV_03883 [Trichophyton verrucosum HKI 0517]
gi|291185913|gb|EFE41371.1| hypothetical protein TRV_03883 [Trichophyton verrucosum HKI 0517]
Length = 1233
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 191/583 (32%), Positives = 305/583 (52%), Gaps = 50/583 (8%)
Query: 141 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 200
V VHR VTP+ +Y GP NR+LR + +ID F+R+ F+DE D + P +
Sbjct: 416 VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGDPVF---FDPSAN 472
Query: 201 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTA 255
+ R ++ GI I R+FEFL FS S LR + W F + G L A
Sbjct: 473 -----LEQIFHQRFAGVMKRGIEIAGREFEFLGFSHSSLRAQTCWFAAPFTTANGDYLNA 527
Query: 256 AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFS 314
I +G F IR+ +K AAR+GQ+FS + ++SV + + + PDVK + +FS
Sbjct: 528 RTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMRAPDVK----RNDRIFS 583
Query: 315 DGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKY 372
DG+G +S + ++ ++ L++ P+ FQIR G KG+V+ D + L LR+SM K+
Sbjct: 584 DGVGVISRDLMYRIWNEYALREKVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESMVKF 643
Query: 373 ESE-LTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 430
++ L +++ A + P +LN Q+I +L L + E F + Q++ + L + +
Sbjct: 644 PTDDLYNIEICGAGIRALPFYLNNQIIKILEDLEVPFEAFHQLQQDEINFLYSTFNSTER 703
Query: 431 AQEALELMSPGENTNILKELLIC----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 486
A + LE SP + L L + G + +PFL +++ +L +L+ + RI +
Sbjct: 704 AAKFLE-DSPVPKSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKYRARIRV 762
Query: 487 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 546
PN ++ G +DET L +++ G R+ +V+ VV+ ++
Sbjct: 763 PNAVTLYGIMDETGYLKENEIYCAYLGGD---------------GRREILVRDNVVITRS 807
Query: 547 PCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
P LHPGD++V+ AV+VPA L + +CV F Q G R P+ SG DLDGD+Y + +D
Sbjct: 808 PALHPGDIQVVNAVDVPANSPLRKLHNCVAFSQHGDRDLPSMLSGGDLDGDLYNIIYDTR 867
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
L+P + PP DY ++ +LD V+ ED+ ++F ++ D LG IA H AD+
Sbjct: 868 LVPRKTIPPADYPRVEAKELDRKVETEDIIDFFVTFMQQDQLGRIATTHQTIADQSEFGT 927
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAE---IPPHLYVKEYPDFM 703
+ CL+LA S+AVD+ K+G+P IP V+ PDFM
Sbjct: 928 LDQACLKLAHLHSVAVDYSKSGIPVNVFSIPRAPRVR--PDFM 968
>gi|350629963|gb|EHA18336.1| hypothetical protein ASPNIDRAFT_176277 [Aspergillus niger ATCC 1015]
Length = 1152
Score = 286 bits (732), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 206/731 (28%), Positives = 344/731 (47%), Gaps = 78/731 (10%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPY-------RAPVSISCIEHALDKLY- 102
+LP+ ILF++ L N + + S L+ Y R P+S+ ++ D +
Sbjct: 293 SLPFGILFQLQALAYNAYLLPRTVQSLAQELIQAYKEDGAAHRRPISVLAMKKLFDMIDW 352
Query: 103 ---HLKECCYEPSRWLTDQYR--KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCG 157
H +E + R K S + D L +H+V +TP+RV G
Sbjct: 353 PSPHGNPTDFEVGALMMALKRNQKDALQDLAASGDMLGPSDNLTPIHKVMITPTRVTLHG 412
Query: 158 PEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILST 217
PE+ NR+LR F D F+R+ F DE+ +H + I +++R
Sbjct: 413 PELEPRNRILRRFPNHHDYFIRVQFCDENGQDLHFN---------SRIHYDDVFSRFKHV 463
Query: 218 LRNGILIGDRKFEFLAFSSSQLRE---SSAWMFASRYGLTAAEIREWMGNFREIRNVAKY 274
L +GI I R + FL +S S LR SS ++ S T I + +G+F +I++ A+
Sbjct: 464 LTHGIQIAGRTYSFLGWSHSSLRSHAFSSPFVDESGQFQTHFSIIKALGDFSKIQSPARC 523
Query: 275 AARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL 334
AAR+GQ+F+ + +S+ +IE+ + K VFSDGIG +S A+ +
Sbjct: 524 AARIGQAFTDTPYAISLSEYDIEVSEMADVTSKDGKRVFSDGIGTLSWNVAKSIWHHIPE 583
Query: 335 KDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELTKLDVLAWS-KYQPCFL 392
K P+ FQ+R GG KG++A D S ++ +R SM K+E ++ L++ A + K L
Sbjct: 584 KKGFPTCFQVRLGGAKGMLAVDGRLSGSQVKVRPSMIKFEGDMKDLEICAMAAKPMVLVL 643
Query: 393 NRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLI 452
NRQ+I +L +G D+ F Q A+ +L ++ ++ ++ + G+ + +
Sbjct: 644 NRQMIKILEDMGTPDDWFLTLQEAALTKLRSVTASAHNSEVFIKRQAVGDTIGLYRLFRH 703
Query: 453 CGYKP---DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFV 509
C + EPF+ +++ +L L+ K RI + G ++ G +DET L QV+V
Sbjct: 704 CHQRDLDYRKEPFIRSVVEAVVLKELRLLKHKARIPVFKGITLFGVMDETGLLEADQVYV 763
Query: 510 QISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH--- 566
Y + G + ++ G+V+V ++P LH GD++ + V P H
Sbjct: 764 T-----YETIEGRHAPPPNA---------GMVLVTRSPALHDGDIQFAQNVIPPDNHPLA 809
Query: 567 HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHD 626
+ +C+VF KG R P++ SG DLDGDI+ V WD + P + P DY + +
Sbjct: 810 ELTNCIVFSSKGYRDLPSQLSGGDLDGDIFNVIWDTDAYPVRTFAPADYPRVSPVDIGRP 869
Query: 627 VQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGV 686
V+ +D+ ++F +++ D LG+IA H + AD+E C +LA+ S AVDF KTG+
Sbjct: 870 VERDDMAQFFLDFMKTDHLGVIATRHMIMADQEAEGTSHPVCRKLAQLHSTAVDFSKTGI 929
Query: 687 PAEIPPHLYVKEY-PDFME------------------------------KPDKPTYESQN 715
P ++ K + PDFM +P Y S+
Sbjct: 930 PVQMSEIPKGKPFRPDFMAPGPVARIHNKSDIELEEYVIQAAYDEDDDMEPFHKYYRSEK 989
Query: 716 VIGKLFRAVKD 726
++GKL+R V +
Sbjct: 990 ILGKLYRGVDE 1000
>gi|400595821|gb|EJP63611.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 1328
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 204/605 (33%), Positives = 302/605 (49%), Gaps = 47/605 (7%)
Query: 135 SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTD 194
S+ +V + VTP+RV GP+ NRVLR F D FLR++F DED +D
Sbjct: 473 SISKQQAWVLKAMVTPTRVILGGPDPESKNRVLRMFHDRTDYFLRVTFTDED-----GSD 527
Query: 195 LSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----SR 250
L+ + D +Y S ++ GI + R+F FL FS S LR SAW A +R
Sbjct: 528 LNFNHRVSNDY----VYDHYRSVMKQGIEVAGRRFSFLGFSHSSLRSHSAWFMAPFVDNR 583
Query: 251 YGLTA-AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIEIG 307
G A + +G+FREIR AK AAR+GQ+FS + +S+ I I I DV+ +
Sbjct: 584 MGRQDYATVLNSLGDFREIRIPAKCAARIGQAFSETPYAVSLRGSSIVISYIEDVRSYVD 643
Query: 308 KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLR 366
+++ VFSDG+G +S + L P+ QIR G KG+++ DP K++ +R
Sbjct: 644 ESR-VFSDGVGTISQGALEEFWDVLPLNLGSPTCVQIRVAGIKGMLSLDPRLLGKQICIR 702
Query: 367 -DSMRKYES----ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL 421
+SM K+ S E+ +V A + LNRQ+I +L +G F Q +A+ L
Sbjct: 703 AESMMKFPSRDFVEIGICEVAA--RPLRLVLNRQMIKILEDMGTNRTWFRAMQAKALETL 760
Query: 422 DAILTDPLKAQEALELMSPGENTNI---LKELLICGYKPDAEPFLSMMLQTFRASKLLEL 478
+ LE G + + ++ + G +PFL +++ +L L
Sbjct: 761 RGVTATAANTCTFLEYQGVGSSIRLPRFIRRMHAHGIDYRGDPFLKGVVEYVVLRELRLL 820
Query: 479 RTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ 538
+ K RI I G ++ G +DET L G++++ R+ G S +V
Sbjct: 821 KHKARIPIEKGVTLFGVMDETGFLKEGEIYIHYD----RRAPGRKDGIEDS------LVD 870
Query: 539 GLVVVAKNPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRPHPNECSGSDLDGDI 595
G VVV ++P LHPGD+++ K V P H + +C+VF Q+G R P++ SG DLDGD
Sbjct: 871 GPVVVTRSPALHPGDIQLAKMVTPPEKHPLRALRNCIVFSQRGGRDLPSQLSGGDLDGDK 930
Query: 596 YFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVF 655
Y V WD +P P Y + LD DV +D+ +F ++ D LG+IAN H ++
Sbjct: 931 YNVIWDGGALPRSVFAPASYPRNKPQPLDRDVTRDDIASFFIEFMRTDVLGLIANRHLMY 990
Query: 656 ADREPRKARSEPCLQLAEKFSIAVDFPKTGVPA---EIPPHLYVKEYPDFME-KPDKPTY 711
AD +P A C++LAE S AVD+ KTG+P EIP K PDFM P TY
Sbjct: 991 ADIQPAGADDPTCIKLAELHSTAVDYSKTGIPPLINEIPRQPKTK--PDFMAPAPPTTTY 1048
Query: 712 ESQNV 716
+ +V
Sbjct: 1049 DLGDV 1053
>gi|341880675|gb|EGT36610.1| hypothetical protein CAEBREN_29614 [Caenorhabditis brenneri]
Length = 1669
Score = 285 bits (730), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 254/899 (28%), Positives = 401/899 (44%), Gaps = 183/899 (20%)
Query: 136 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 195
+ +G V ++ TP+RV + PE + NRVLR + D LRI+F D+D K+
Sbjct: 499 MREGYQRVRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMR---- 554
Query: 196 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTA 255
T+ T T + + + L +GI + R F +L S+SQ+R++ A+ F +Y ++
Sbjct: 555 -------TNKTSTLLEKTVNNYLHSGITVAGRNFGYLGSSNSQMRDNGAY-FMEKY--SS 604
Query: 256 AEIREW----------------------MGNFREIRNVAKYAARLGQSFSSSKETLSVHM 293
++ RE+ +G F I N+ K ARLGQ F+ S+ + V++
Sbjct: 605 SQCREYEAIHHVKPPITYNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLS-GVNL 663
Query: 294 DEIEIIPDVKIEIGKT----KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGY 349
D + + GK +Y FSDG+G +S FA+ V+ PS FQ+ +
Sbjct: 664 DRCTYMTMYDLTGGKNIKRDEYTFSDGVGMMSLRFAQMVSQVMDFGKGVPSCFQV----F 719
Query: 350 KGVVAADPTSSKKLSLRDSMRKYESELT-------------------------------K 378
+A P + L D +RK+ E +
Sbjct: 720 LNPIA--PKTPIFSPLLDMIRKWSLEFALEKPSDDVAWGLNCVFRPSQIKFISKRHPRDQ 777
Query: 379 LDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELM 438
++++ +S P LN+ I++L D++ E + E R++ + + L Q L
Sbjct: 778 VEIVKYSSPVPVSLNKPFINIL------DQVSEMQSLECHRRVTNRIEELLDRQMLLFAQ 831
Query: 439 SPGENT---NILKEL----------LICGYKPDAEPFL-SMMLQTFRASKLLELRTKTRI 484
+ T N LKEL G+ +EPF S++ + + S +LR K +I
Sbjct: 832 QMVDETFCRNRLKELPRRVDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITKQLR-KEQI 890
Query: 485 FIPN--GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVV 542
IP GRSM+G +DET L YGQ+FVQ + +L ++ R ++ G V+
Sbjct: 891 PIPQDLGRSMLGVVDETGRLQYGQIFVQYT--------KNLALKLPPKNAARQVLTGTVL 942
Query: 543 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDD 602
+ KNPC+ GDVR+ +AV++P LHHM D VVFPQ G RPHP+E +GSDLDGD Y + WD
Sbjct: 943 LTKNPCIVAGDVRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSIIWDQ 1002
Query: 603 ELIPPQQDPPMDYTPAQSMQLDHDVQIEDV-EEYFTNYIVNDSLGIIANAHTVFADREPR 661
+L+ + + P D+T + + +I+D+ E++ Y+ DS+G I+N+H +D+
Sbjct: 1003 QLLLDKNEDPFDFTSEKQKSSFKEEEIDDLMREFYVKYLKLDSVGTISNSHLHNSDQYGL 1062
Query: 662 KARSEPCLQLAEKFSIAVDFPKTGVPAE---------------IPPHLYVKEYPDF-MEK 705
AR C+ LA+K AVDF K+G P + IPP + PD+ M
Sbjct: 1063 NARV--CMDLAKKNCQAVDFTKSGQPPDELERKWRKDEETGEMIPPE-RCERVPDYHMGN 1119
Query: 706 PDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYH 765
P Y S + GKLFR K I I E S D ++ ++G+E ++ A
Sbjct: 1120 DHTPMYVSPRLCGKLFREFKAIDDVLK-ISEERDEQVEISIDENIMMEGYESYMHSARDE 1178
Query: 766 KGNYDYK-----LGNLMDYYGIKTEAEILTGSIMKMSKSFTKR--------RDAEAIGMA 812
Y+ + L ++M+ YGIKTE E+ +G I+ M + + + I
Sbjct: 1179 LSRYNAQLRVSFLDSMMENYGIKTEGEVFSGCIVDMRNRISDKDQDDMSFYNTNQMIETK 1238
Query: 813 VRALRKEARAWFKE--------------KSGSDTE----------DDAYAKASAWYHVTY 848
V L K+ R F E + GSD KA AWY Y
Sbjct: 1239 VTNLFKKYREHFFEEFEGGWEANTESSSRIGSDANILQRQCRAPTQKMMRKAVAWYRACY 1298
Query: 849 -HPDYWGCYNQGMN---------RDHFLSFPWCVYDRLVEIKK------DKTSIGNAFP 891
+ C + + + LSF W +D + +K+ D +G A P
Sbjct: 1299 GTKNPQKCIHNLIKFLEEARITRENKKLSFAWIAFDVIAMVKQTRSLASDDVQMGGANP 1357
>gi|406862357|gb|EKD15408.1| RNA-dependent RNA polymerase [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1193
Score = 285 bits (729), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 199/641 (31%), Positives = 320/641 (49%), Gaps = 75/641 (11%)
Query: 133 AISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS 192
+IS + +HRV +TPS Y GPE NRVLR + + D+F+R+SF DED + I
Sbjct: 408 SISKSENHAMIHRVTITPSGFYLGGPEYEPMNRVLRQYPKHHDSFIRVSFADEDGEPIR- 466
Query: 193 TDLSPRGSSATDITRTRIYT-RILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FA 248
+P+ ++ +I+ R + L G + RKF+FL FS S LR S W FA
Sbjct: 467 --FNPK------VSNEKIFQDRFGTFLSTGFHVAGRKFDFLGFSHSSLRAQSCWFMSPFA 518
Query: 249 SRYGLTAAEIR-EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIG 307
L + + +G+F +IR AK AAR+GQ+FS + + + ++++PDV+
Sbjct: 519 HNGSLMYDRVLIQQLGDFTKIRCPAKCAARIGQAFSETPIAVPLEPGLVQLLPDVE---- 574
Query: 308 KTKYVFSDGIGKVSAEFARKV-ASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSL 365
+ VFSDG GK+S ++ A ++ + P+ FQIRY G KG+++ D T ++ +
Sbjct: 575 RGSRVFSDGCGKISRSIMHRIWAVLPDMRKHQPTCFQIRYQGAKGMLSLDDTLEGDQVLM 634
Query: 366 RDSMRKYESELTKLDVLAWSKYQ--PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 423
R SM K++ + L + Y+ P +LNRQLI ++ +G+ D+ F Q + + +L
Sbjct: 635 RPSMIKFDGSPSFDLELCNASYKSLPMYLNRQLIKIMEDIGVPDQWFLDLQSQEIERLRK 694
Query: 424 ILTDPLKAQEALELMSPGENTNI---LKELLICGYKPDAEPFLSMMLQTFRASKLLELRT 480
T A + L S G+ ++ +++L + + FL +L+ ++ L+
Sbjct: 695 ATTSASNAAKFLSSHSIGDRVHLSWLIRKLAQMSIEFRTDRFLCDVLELSVMLEVKTLKH 754
Query: 481 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL 540
+ R +P G ++ G +DET L G+++ + S + ++ ++Q
Sbjct: 755 RARYPVPEGLTLYGIMDETGILEEGEIYCT---------------YQSQKGKRMVVIQDR 799
Query: 541 VVVAKNPCLHPGDVRVLKAVNVP---ALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYF 597
V+V ++P LHPGDV+ +KAVNVP L + +C+ F QKG R P+ SG DLDGD+Y
Sbjct: 800 VLVTRSPALHPGDVQPVKAVNVPRDSPLSKLRNCICFSQKGDRDLPSMLSGGDLDGDLYN 859
Query: 598 VCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFAD 657
+ WD + P DY + + V ED+ ++F ++ D LG IA +H + AD
Sbjct: 860 IIWDPGCQIRFKSFPADYPRQDPIDIGRQVSREDMTKFFVQFMETDQLGRIAMSHQILAD 919
Query: 658 REPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPH-LYVKEYPDF--------MEK--- 705
++ E C LAE S AVDF KTGVP ++ + PDF MEK
Sbjct: 920 QKDMGTFDEDCRILAEMHSTAVDFSKTGVPVDMKKMPKFTPIRPDFMSMGNHVRMEKKEG 979
Query: 706 --------------------PDKPTYESQNVIGKLFRAVKD 726
P YES ++GKL+RA+ +
Sbjct: 980 LLLEATTLSTQDDNNDDDDFPAYRYYESDRILGKLYRAIDE 1020
>gi|353235419|emb|CCA67432.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora
indica DSM 11827]
Length = 1186
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 224/719 (31%), Positives = 358/719 (49%), Gaps = 79/719 (10%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE- 110
LP+++ F++ L+ C P R + + S + L +E E
Sbjct: 310 LPFKVAFQVQGLLSR-CAFNPQEILEILRDIHAALTELGRSATAECVKALEQEREGNPEA 368
Query: 111 -PSRWLTDQYRKYMTSRSKPSSPAISLDD-GLVYVHRVQVTPSRVYFCGPEINVSNRVLR 168
P+ D + + TS + A+S ++ G+ HR +TPS + GP + +NRV+R
Sbjct: 369 TPAALFADVVQSFRTSNN---VKAMSDEEPGVFECHRATITPSSIILTGPLPDETNRVIR 425
Query: 169 HFRRDIDNFLRISFIDED---LDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIG 225
+R+ F+RI F +ED L K + DL G+ D RI ++NG+L+
Sbjct: 426 KYRKYAHKFIRIDFTEEDGLHLRKEKNVDL---GAILDD--------RIGEFMKNGLLVA 474
Query: 226 DRKFEFLAFSSSQLRESSAWM---FASRYG--LTAAEIREWMGNFRE-IRNVAKYAARLG 279
R+FEFLA+SSS L+E + W F + G +T+ IR +G+F + I ++Y ARL
Sbjct: 475 GRRFEFLAYSSSALKEHAVWFMTPFTTSDGQYVTSESIRRSLGDFSKVIYCPSRYGARLS 534
Query: 280 QSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASK-------- 331
Q+FSS++ ++++ ++EI IPD + + G +++DG+G +S + A ++ +K
Sbjct: 535 QAFSSTEPSITIKVNEIRFIPDKESDQGS---LYTDGVGTMSPQVAEEIWAKYTEPRSKR 591
Query: 332 CGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELTKLDVL-AWSKYQP 389
+ PSAFQIR GG KG++ D + + +RDSM K+ S ++++ A+ +
Sbjct: 592 SRRRLKTPSAFQIRLGGLKGMLCVDSRLQGRVVCVRDSMNKFHSNDREVEIARAFDRPMT 651
Query: 390 CFLNRQLISLLSTLG-IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN---TN 445
FLNR LI LL TL + E F Q +AV + + A LE G T+
Sbjct: 652 MFLNRPLIMLLETLKKVPLEPFMALQTKAVEETRDAMKSFDTAARLLEQYGLGTAFRLTS 711
Query: 446 ILKEL----LICGYKPDAE---PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 498
+ +L + K ++ PFL MLQ L +L+ K RI +PN +++G DE
Sbjct: 712 VFLQLHKLDVALALKDQSQGLLPFLGRMLQFVENHILRDLKYKARIPVPNAWTLVGVSDE 771
Query: 499 TRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLK 558
L +++ ++ R + GE ++G V+++++P +HPGD R++
Sbjct: 772 YDYLGENEIYARV-----RTIDGEEQY-----------LEGPVMISRSPTVHPGDARMVW 815
Query: 559 AVNVPA------LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPP 612
A+ P+ L + +CVVFP KG P +G DLDGD+Y + D +L Q
Sbjct: 816 AIGKPSRGAPPGLEDLTNCVVFPCKGHPSLPQCLAGGDLDGDLYCLVLDPQLHFRWQFQH 875
Query: 613 MDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLA 672
DY P Q + LD I+DV ++ NYI ND LG+I+ + AD E C++LA
Sbjct: 876 GDYDPPQLVTLDRPSTIKDVAQFVINYIKNDLLGVISTRSMLIADIREDCLADEDCVKLA 935
Query: 673 EKFSIAVDFPKTG--VPAEIPPHLYVKEYPDF----MEKPDKPTYESQNVIGKLFRAVK 725
+ SIAVD+PKTG V E P L PD+ + D Y+S IG LFRA++
Sbjct: 936 KLHSIAVDYPKTGRHVEFEQMPSLESNRRPDWHANELNDNDPELYQSNRHIGHLFRAIE 994
>gi|290989465|ref|XP_002677358.1| predicted protein [Naegleria gruberi]
gi|284090965|gb|EFC44614.1| predicted protein [Naegleria gruberi]
Length = 913
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 209/673 (31%), Positives = 342/673 (50%), Gaps = 69/673 (10%)
Query: 90 SISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVT 149
S + AL+K L+ + PS + T ++K+ R S + +DD + + +V +T
Sbjct: 261 SYDLVNVALEKC--LQHEGFFPSEFTT-LFKKHSHKRQHKS--FVKVDDNMFEIRKVMIT 315
Query: 150 PSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTR 209
P+ + + + NRVLR +++ D FLR++F DE L+++ + + T
Sbjct: 316 PTGIKYFPKILESGNRVLRKYKQYEDRFLRVTFCDEGLNRVSAEKV------------TN 363
Query: 210 IYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASR--YGLTAAEIREWMGNFRE 267
++ R+ L NG IG+R +E LA+S+SQLR S W + L+ + I E +G+F +
Sbjct: 364 MHPRLEEFLNNGFTIGNRHYEMLAYSNSQLRSHSCWFLNTEGIRELSVSSIIEGLGDFSD 423
Query: 268 IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE-IGKTK-YVFSDGIGKVSAEFA 325
I+ +AKYAAR+GQ FS++ + E+ I +IE G K V +DG G++S FA
Sbjct: 424 IKVMAKYAARIGQCFSNTFNGIKSEFIEVNDIVYREIERNGDIKENVLNDGCGRMSVSFA 483
Query: 326 RKVASKCGLKDNP----PSAFQIRYGGYKGVVAADPTSS----KKLSLRDSMRKYESELT 377
+V+ + ++ + PSA Q R GGYKGVV D + K L L S K++ E +
Sbjct: 484 EQVSKQMKIRIHGKAYIPSALQFRLGGYKGVVVQDKDVADIFGKDLVLTKSQNKFKDEKS 543
Query: 378 -KLDVLAWSKYQPCF--LNRQLISLLSTLGIWDEIFEK-------------KQREAVRQL 421
+ +++A+SK +P F LNRQ+I LLS+ G+ D K ++ ++R+L
Sbjct: 544 DEFEMVAFSK-RPKFSSLNRQIIILLSSNGLPDSALMKFVDREIETWRSRTTKKLSIRKL 602
Query: 422 DAILTDPLKAQEALELMSPGENTNILKELLICGYKP----------DAEPFLSMMLQTFR 471
+ + + +++S E ++ ++L K + +P L +
Sbjct: 603 LRKVWENVVGSNIKKVIS-SEYLDLKAQVLASQVKGMSQQHVEYFYNVDPLLCTLCDKIL 661
Query: 472 ASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISG-AGYRQLHGESSLFSSSR 530
++ L KT + + +MG +D L +VFVQ+S Y E L+
Sbjct: 662 INQFSSL--KTNLPVDKCSLLMGVVDFYGVLEDDEVFVQLSSFESY-----ERDLYDPGS 714
Query: 531 SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN---VPALHHMVDCVVFPQKGMRPHPNECS 587
+ IV G V V +NPCLHPGDVR KAV+ + L H+ D +VF QK + ++ S
Sbjct: 715 YAEGGIVSGNVFVTRNPCLHPGDVRKFKAVSDDRINVLKHLKDVIVFSQKSKQSQASKMS 774
Query: 588 GSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGI 647
G DLDGD++ VCWD EL+ + PM +T + ++ + + + ++ Y+VND+LG+
Sbjct: 775 GGDLDGDLFMVCWDPELLNFTEHKPMKHTQLKPLEKNDGFDYKAIRDFLKEYVVNDNLGV 834
Query: 648 IANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKP- 706
+A H D+ + A + CL LA+ S VD+ KTGV +P L + P +M K
Sbjct: 835 VAFMHMEHYDQSSKGALDQNCLDLADYHSHQVDYAKTGVRKALPMELVSEYRPHYMPKSF 894
Query: 707 DKPTYESQNVIGK 719
K TY S +IGK
Sbjct: 895 MKKTYHSTKIIGK 907
>gi|358369173|dbj|GAA85788.1| RNA-directed RNA polymerase (Sad-1) [Aspergillus kawachii IFO 4308]
Length = 745
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 188/563 (33%), Positives = 294/563 (52%), Gaps = 38/563 (6%)
Query: 338 PPSAFQIRYGGYKGVVAADPTSS-KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQL 396
PPSAFQ R GG KG++A + +++ +R+S K+ + L+++ WS+Y LNRQL
Sbjct: 13 PPSAFQFRLGGCKGMLAVSSDAQPQEIHIRESQNKFPTVHNGLEIIRWSQYSMATLNRQL 72
Query: 397 ISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGY 455
I ++STLGI DE+F K + +R LD + +A E L+ + P + T + +++ G+
Sbjct: 73 ILVMSTLGIPDEVFHAKLKSMLRALDEAMESDSRAIEVLKKYVDPNQTTLTVSQMVSDGF 132
Query: 456 KPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI---S 512
+ EPF + +L +R + L+ K +I I NG +++G +DET L G + +I
Sbjct: 133 RRSKEPFFTSILALWRTWHIKYLKEKAKIVIDNGTNLLGVMDETGILK-GYFYDKIPKED 191
Query: 513 GAGYRQLHGESSLF-------SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 565
+ ++L +F S Q +++GL ++A+NP LHPGD+RV++AVNVP L
Sbjct: 192 ASLEQKLAALPEIFLQVPRTSGSEGGAQYEVIEGLCILARNPSLHPGDIRVVRAVNVPEL 251
Query: 566 HHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD---PPMDYTPAQSMQ 622
H + D VV PQ G R + CSG DLDGD Y V WD +LI +D PM YT ++
Sbjct: 252 HSLRDVVVLPQTGDRDIASMCSGGDLDGDDYLVIWDQDLI--HKDWFLDPMRYTSNKAQD 309
Query: 623 LDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFP 682
LDHDV +++V +F Y+ NDSL IA+AH +AD+ E C++LA+ S AVD+
Sbjct: 310 LDHDVTVDEVTSFFVMYMKNDSLPTIAHAHVAWADQLEDGVNEEKCIRLAQLHSDAVDYN 369
Query: 683 KTGVPAEIPPHLYVKEYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIRLFTK 739
KTG PA + +L + +P FMEKP KP Y S+ ++G+L+ AV+ + S F +
Sbjct: 370 KTGRPAIMTRNLQPRRWPHFMEKP-KPKDQIYCSRKILGQLYDAVERVDFVPSLEMPFDE 428
Query: 740 EVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKS 799
+ S + ++ F ++ K +D + +M + IKTE E+ + I+ S
Sbjct: 429 RILNCSIEVSEDLYTFAKNL------KNEFDTAMRRIMAQHEIKTEFEVWSTFILNHSHM 482
Query: 800 FTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQ- 858
+ E IG A R+ R K T + A A Y VT+
Sbjct: 483 SKDYKFHEEIGAISAAHRETFRKQCYNKVDGRTFELLAPLAVAMYRVTHEEMTQALKKHR 542
Query: 859 ---------GMNRDHFLSFPWCV 872
+N+ +SFPW +
Sbjct: 543 ENSPPHETPKINQLPLISFPWIL 565
>gi|258569467|ref|XP_002543537.1| predicted protein [Uncinocarpus reesii 1704]
gi|237903807|gb|EEP78208.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1004
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 185/589 (31%), Positives = 302/589 (51%), Gaps = 67/589 (11%)
Query: 141 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 200
V V+R QVTPS +Y GP I NRVLR + I++FLR+ F+DE D+++ P+ S
Sbjct: 429 VKVNRTQVTPSGIYLYGPNIETKNRVLRQYDNHINHFLRVEFVDEHGDRVY---YDPQAS 485
Query: 201 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTA 255
Y R L+NGI IG R+F FL FS S LR + W F + G
Sbjct: 486 -----LEEIFYQRFKGVLKNGIQIGGRRFSFLGFSHSSLRSQTCWFVAPFITNTGERFDV 540
Query: 256 AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFS 314
I + +G+F I + +K AAR+GQ+FS ++ ++ + D + PD+K + VFS
Sbjct: 541 ESIIQGLGSFDHIYSPSKLAARIGQTFSETQSSIKIPEDAVYFDEPDIK----RNGRVFS 596
Query: 315 DGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGG----------------------YKG 351
DG+G +S K+ + L++ P+ FQIR+ G KG
Sbjct: 597 DGVGTMSPSIMYKIWKEYALRERVKPTIFQIRFAGNSLPSTFPCYPTANTVFCIILGAKG 656
Query: 352 VVAADP-TSSKKLSLRDSMRKYESELT-KLDVL-AWSKYQPCFLNRQLISLLSTLGIWDE 408
+V+ D +L LR+SM K++++ +++ + ++ P +LN QLI +L LG+
Sbjct: 657 MVSLDSRLKGDQLKLRESMIKFKAKGAFNIEICGSGTRALPFYLNAQLIKVLEDLGVRPS 716
Query: 409 IFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI---LKELLICGYKPDAEPFLSM 465
F Q + + +L ++ +KA + LE + + + ++ + D +PFL
Sbjct: 717 AFIDLQTDEIDRLRSVEKSVIKAGQFLEQTNIAQGVRLPWLIQVIRGLELHHDQDPFLRS 776
Query: 466 MLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQ-ISGAGYRQLHGESS 524
++Q K+ +L+ + RI +PN ++ G +DE+ L G++F ++ G R++
Sbjct: 777 VIQLAVFLKMRDLKYRARIRVPNAVTLYGIMDESGYLKEGEIFCTFLTEGGVREI----- 831
Query: 525 LFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRP 581
+V+ ++V ++P LHPGDV+ AV+VPA L + +CVVF Q G R
Sbjct: 832 -----------LVRDRIIVTRSPALHPGDVQFANAVDVPATSPLRKLHNCVVFSQHGQRD 880
Query: 582 HPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIV 641
P+ SG DLDGD+Y + +D+ L+P + P DY + L+ V +D+ ++F ++
Sbjct: 881 LPSMLSGGDLDGDLYNIIYDERLMPRRTIEPADYPRVEEKLLNRRVVRDDIIDFFVTFME 940
Query: 642 NDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEI 690
D LG IA H AD++ + CL LAE S AVDF K+G+P +
Sbjct: 941 QDQLGRIATIHQALADQKIEGTLDQDCLLLAELHSTAVDFSKSGIPVSV 989
>gi|241244478|ref|XP_002402311.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215496312|gb|EEC05952.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 519
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 191/543 (35%), Positives = 280/543 (51%), Gaps = 40/543 (7%)
Query: 258 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK---IEIGKTKYVFS 314
IR+WMG F I NVAK AR+GQ FSS+++ + V E+ ++PD++ + + YVFS
Sbjct: 1 IRDWMGRFDGIPNVAKRMARMGQCFSSTEQAVLVRKHEVRMVPDMEGGAHPVSRKPYVFS 60
Query: 315 DGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT--SSKKLSLRDSMRKY 372
DG+G +S A++V LK+ P SA QIRY G KG++ +P + K L LR SM+K+
Sbjct: 61 DGVGMMSVPLAQEVYKVMKLKERP-SAIQIRYAGAKGMLCINPELPNQKLLYLRPSMQKF 119
Query: 373 ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 432
T D L K R+L + L + D Q L+ + +K
Sbjct: 120 PC--TSSDYLEVVKVSA---PRKLHTPLGRVHYLDSDRTIHQVSGEYHLEELGLGCIKDD 174
Query: 433 EALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLE---LRTKTRIFIP-- 487
+ M + K I + +S F +L LR KTRI +P
Sbjct: 175 AIMSRMVSTAMAVLTKPRYIIS---SCDIMVSCSCTMFNLVVVLHAAGLRYKTRIALPVD 231
Query: 488 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNP 547
R+M+G +D T L YGQVFVQ S G R +S + R ++ G V+V K P
Sbjct: 232 RARNMLGVVDTTGVLRYGQVFVQCSEMGAR-----ASQQGPPKCR---VITGQVLVTKCP 283
Query: 548 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI-P 606
CLHPGDVR A++ P LHH+VDC+VFP +G RPHP+E +GSDLDGD Y V W+ L+ P
Sbjct: 284 CLHPGDVRKFTAIDEPRLHHVVDCIVFPGQGHRPHPDEMAGSDLDGDEYIVIWEPSLLFP 343
Query: 607 PQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSE 666
PM+++ ++ I D+ ++ NYI NDS+GI++NAH +AD+E S
Sbjct: 344 GYNKQPMNFSDRNPEPERGEITINDMIQFLCNYIKNDSIGILSNAHLAWADQEEEGIYSR 403
Query: 667 PCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEK-PDKPTYESQNVIGKLFRAVK 725
CL +AEK SI +DF K+G A + YPDFMEK K +Y S V+G L+R +
Sbjct: 404 RCLAIAEKISICLDFAKSGRTAYLRREERPMFYPDFMEKGSHKISYRSDRVLGLLYRTCR 463
Query: 726 DIAPHTSCIRLFTKEVARRSYDPD----MEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYG 781
+ + R D ++V G++ + A+ +Y+ +L +++ YG
Sbjct: 464 SLEAAVG-------SLGHRHVDAGRCLALDVPGWQRYESAALAALADYNTRLRRILNQYG 516
Query: 782 IKT 784
I +
Sbjct: 517 IAS 519
>gi|328855950|gb|EGG05073.1| hypothetical protein MELLADRAFT_64236 [Melampsora larici-populina
98AG31]
Length = 1240
Score = 283 bits (723), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 214/621 (34%), Positives = 329/621 (52%), Gaps = 76/621 (12%)
Query: 146 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI 205
V +TPSR GP SN VLR +R D NFLRIS +E+ L+ R DI
Sbjct: 446 VTITPSRFILEGPVTEQSNSVLRMYR-DTHNFLRISIREEN-------GLTLRPDRDVDI 497
Query: 206 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG----LTAAEIREW 261
R + TR L L G+ + RKFEFL +SSS LRE AW Y +TAA IR+
Sbjct: 498 LRL-LKTRYLDFLTQGLNLCGRKFEFLGYSSSALREHQAWFVCPFYKGDSLVTAASIRQR 556
Query: 262 MGNFREIRNV-AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKV 320
+G+F ++ N+ A+Y AR+ Q+F+S++++L++ +I I DV+ + F+DG+G +
Sbjct: 557 LGDFSKVINIPARYMARVAQAFTSTRQSLTLLPSQIVRIEDVE----RNGSCFTDGVGTI 612
Query: 321 SAEFARKV--ASKCGLKDNP------PSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRK 371
S + AR+V GL S FQIR GG+KG+++ DPT + + +R SM K
Sbjct: 613 SPDLARQVDEVLSAGLPSRKRRHHANSSCFQIRLGGFKGMLSVDPTLKQACVCVRPSMDK 672
Query: 372 YES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 429
+ S + LD+ ++++ P +LNR +I +L LGI +++F QRE V +++ T+
Sbjct: 673 FVSPDSLTLDIAGSFTRPLPAYLNRPMIKVLEDLGIHEQVFLALQREIVSKVEHSRTNLR 732
Query: 430 KAQEALELMSPGENT---NILKEL-LICGYKPDA------EPFLSMMLQTFRASKLLELR 479
+A E ++ +S + +IL++L + G + + E + M++Q FR +L+
Sbjct: 733 RASELMDQLSMARTSGMPSILRQLGTLMGDESNTQSDFIEECYDLMIMQCFR-----DLK 787
Query: 480 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 539
+ RI + +++G DE + L V+ I G + F ++G
Sbjct: 788 YRARIPLDASYTLVGVADEDQVLPPNFVYACIQYPG----------------KAPFYLEG 831
Query: 540 LVVVAKNPCLHPGDVRVLKAVN------VPALHHMVDCVVFPQKGMRPHPNECSGSDLDG 593
+ ++++PCLHPGDVRV+ + P L+ + +CVVF GMR P+ G DLDG
Sbjct: 832 PITISRSPCLHPGDVRVVTGIGKLDLERAPRLNALRNCVVFSVAGMRSLPSCLGGGDLDG 891
Query: 594 DIYFVCWDDELIPP--QQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANA 651
D+Y + ELIP + PP YT + +LD IED +F +YI +D +G+IA+
Sbjct: 892 DLYTLITLPELIPATARLHPPASYTAPEMKRLDRPCTIEDGAAFFLDYISSDLVGVIASR 951
Query: 652 HTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIP--PHLYVKEYPDFM------ 703
H AD+ + R + CL+L S AVD+PKTGVP I P + PDFM
Sbjct: 952 HLHIADQADQGTRDDLCLELVSLHSDAVDYPKTGVPVAIDQLPRAPNRMKPDFMCPEHHE 1011
Query: 704 EKPDKPTYESQNVIGKLFRAV 724
+ YESQ V+GKLFR +
Sbjct: 1012 RREGDDYYESQKVLGKLFRQI 1032
>gi|325095101|gb|EGC48411.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
Length = 1209
Score = 282 bits (722), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 248/843 (29%), Positives = 379/843 (44%), Gaps = 164/843 (19%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 111
+PY + F++ LV NG ++ P +F V RA + I ++ + L L P
Sbjct: 321 MPYRVRFQLQKLVWNGDIS-PAKAISFASRV---RAALVIEDLDIVVRALMRLSSDVKWP 376
Query: 112 SR----------WLTDQYR---------KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSR 152
S L + ++ + MT ++P P + +HR Q+TP
Sbjct: 377 SPDVEASEVDVPALVEVFKNALESTAREREMTRSNRPMHP------NHISIHRAQITPCG 430
Query: 153 VYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYT 212
Y GP NRVLRH+ +D+FLR+ F+DE D + PR S D+ +
Sbjct: 431 TYLDGPHAETKNRVLRHYSSHVDHFLRVEFVDETGDPVR---YDPRAS--IDMI---FES 482
Query: 213 RILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG----LTAAEIREWMGNFREI 268
R + L++GI I RKFEFL FS S LR + W A Y A+ I + +G F I
Sbjct: 483 RFKTVLKSGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYKDRILYNASTIIQNLGRFDHI 542
Query: 269 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV 328
++ AK AR+GQ+FS + ++ + I I DV+ + VFSDG+G
Sbjct: 543 QSPAKQVARIGQTFSDTLTSIPISDKYISIGKDVE----RNGRVFSDGVGA--------- 589
Query: 329 ASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYE--SELTKLDV-LAW 384
KG+++ D K L LR SM K+ + ++ +
Sbjct: 590 ---------------------KGMISLDSRKKGKSLVLRPSMIKFHLPNSYNAFNIEICG 628
Query: 385 SKYQPC--FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGE 442
S +P FLN QLI +L LG+ D +F + Q + + +L A T KA LE
Sbjct: 629 SGLKPLPFFLNAQLIKILEDLGVDDSVFLRLQADEISRLRATATSTAKAARFLE------ 682
Query: 443 NTNILKELLI---------CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 493
+TNI K + + G + + FL +++ KL +L+ + RI +PN ++
Sbjct: 683 DTNIAKSVGLPWLINILEGFGLRHSNDEFLRRVMELAVLIKLRDLKYRARIRVPNAVTLF 742
Query: 494 GCLDETRTLNYGQVF-VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 552
G +DET L G+VF +S G R++ +V VVV ++P +HPG
Sbjct: 743 GIMDETGILKEGEVFCTSLSDKGVREV----------------LVNPRVVVTRSPAMHPG 786
Query: 553 DVRVLKAVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ 609
DV++ +AV+VPA L + +C+ F Q G R P+ SG DLDGD+Y V +D+ L+P +
Sbjct: 787 DVQIARAVDVPADSPLRQLHNCIAFSQHGHRDLPSMLSGGDLDGDLYNVIFDNTLLPKRI 846
Query: 610 DPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCL 669
P +Y Q L V ED+ ++F ++ D LG IA H ADR P CL
Sbjct: 847 ARPAEYPRVQEKVLGRAVVREDIIDFFVTFMQQDQLGRIATIHQALADRRPLGTFDPECL 906
Query: 670 QLAEKFSIAVDFPKTGVP---AEIP-------------PHLYVKEYPDFME--------- 704
LAE S AVDF KTGVP A IP P + + E +E
Sbjct: 907 LLAELHSTAVDFSKTGVPVDLARIPKFPSCRPDFQAPSPRIRIAENLSLLEGDMDAVQDG 966
Query: 705 -------KPDKPTYESQNVIGKLFRA---VKDIAPHTSCIRLFTKEVARRSYDP-----D 749
+P Y+S+N++GKL+R+ VK + S + L + A
Sbjct: 967 GDEDDDERPAVRFYKSENILGKLYRSIDEVKFLQHRQSAMELPSAMGAPSVLQGVWEFVQ 1026
Query: 750 MEVDGF--EDHIDDAIYHKGNYDYKLGNLMDYYGIK------TEAEILTGSIMKMSKSFT 801
E +GF + HI+ A+ + Y+ L +M Y TE E+ G+I+ + +
Sbjct: 1027 REAEGFLWDHHIEHALDIRQIYEDNLLEIMARYSSTPWKSSITEYEVFVGTILGHGQKLS 1086
Query: 802 KRR 804
+R+
Sbjct: 1087 QRQ 1089
>gi|358378399|gb|EHK16081.1| hypothetical protein TRIVIDRAFT_10390, partial [Trichoderma virens
Gv29-8]
Length = 1247
Score = 282 bits (721), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 211/653 (32%), Positives = 315/653 (48%), Gaps = 80/653 (12%)
Query: 126 RSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE 185
R+ P P L + +V +V VTP+R+ GP+ NRVLR F + D F R+ F DE
Sbjct: 411 RTSPYGP--QLPEHQAWVLKVMVTPTRIMLHGPDGENKNRVLRMFPQHSDYFARVIFGDE 468
Query: 186 DLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAW 245
D DL+ S + + I+ R +++GI + RKFEFL FS S LR SAW
Sbjct: 469 D-----GQDLALLPS----VNNSAIFERYRKIMKDGIHVAGRKFEFLGFSHSSLRSHSAW 519
Query: 246 M---FASRYGLTAAE-IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI--I 299
F + L + I +G+F +IR AK AAR+GQ+FS + + + I I I
Sbjct: 520 FCAPFVDKMELQNNDSIIRSLGDFSDIRIPAKCAARIGQAFSETPYAVDILKCGIGIKYI 579
Query: 300 PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS 359
PDVK GK VFSDG+G +S + ++ + + ++ P+ FQ+R GG KG+++ D
Sbjct: 580 PDVKTADGKR--VFSDGVGTISWDAMEEIWDRLPMNNSAPTCFQVRLGGIKGMLSLDSRL 637
Query: 360 SKKLSL--RDSMRKY-ESELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQR 415
K+ ++SM K+ S+ T L + SK LNRQ I +L +G E F +Q
Sbjct: 638 KGKVICIRKESMMKFPSSDQTTLGICDTASKPLRLVLNRQTIKILEDMGTNFEWFIDQQN 697
Query: 416 EAVRQLDAILTDPLKAQEALELMSPGENTN---ILKELLICGYKPDAEPFLSMMLQTFRA 472
+A+ L + LE G N ++K L G + F+ ++
Sbjct: 698 KALDVLRNVTASASNTSTFLESQLVGTNVGFPKLIKYLNKVGIDYRRDKFMKKVVDHTIL 757
Query: 473 SKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSR 532
+L L+ K RI + G ++ G +DET L GQ++V +SS +
Sbjct: 758 RELRLLKHKARIPVDQGVTLFGIMDETGFLEEGQIYVTF----------DSSYDKAQGRV 807
Query: 533 QRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD---CVVFPQKGMRPHPNECSGS 589
+ + G V++ ++P LHPGD+++ + + P H + D CVVF QKG R P++ SG
Sbjct: 808 KGSLKDGFVLITRSPALHPGDIQLAQVMTPPHGHPLRDLRNCVVFSQKGSRDLPSQLSGG 867
Query: 590 DLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIA 649
DLDGD+Y + WD +IP P DY LD V ED+ ++F ++ D LG+IA
Sbjct: 868 DLDGDLYSIFWDPFVIPKSYFTPADYPRVTPPALDRVVTREDIADFFVKFMETDILGMIA 927
Query: 650 NAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEI-----PPHLYVKEYPDFME 704
N H +FAD + + C LAE S AVD+ KTG+P I P L PDF+
Sbjct: 928 NRHQIFADFKDEGTVDQVCTNLAELHSTAVDYSKTGIPVTIQQLPKAPRL----RPDFL- 982
Query: 705 KPDKPT-------------------------------YESQNVIGKLFRAVKD 726
P PT Y+SQ ++G+L+R V +
Sbjct: 983 APAPPTRLYDRGEVSHIGDPESDEDDEDGMGASKKGYYKSQKILGELYRGVDE 1035
>gi|328848635|gb|EGF97840.1| hypothetical protein MELLADRAFT_114044 [Melampsora larici-populina
98AG31]
Length = 1135
Score = 282 bits (721), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 214/621 (34%), Positives = 329/621 (52%), Gaps = 76/621 (12%)
Query: 146 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI 205
V +TPSR GP SN VLR +R D NFLRIS +E+ L+ R DI
Sbjct: 446 VTITPSRFILEGPVTEQSNSVLRMYR-DTHNFLRISIREEN-------GLTLRPDRDVDI 497
Query: 206 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG----LTAAEIREW 261
R + TR L L G+ + RKFEFL +SSS LRE AW Y +TAA IR+
Sbjct: 498 LRL-LKTRYLDFLTQGLNLCGRKFEFLGYSSSALREHQAWFVCPFYKGDSLVTAASIRQR 556
Query: 262 MGNFREIRNV-AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKV 320
+G+F ++ N+ A+Y AR+ Q+F+S++++L++ +I I DV+ + F+DG+G +
Sbjct: 557 LGDFSKVINIPARYMARVAQAFTSTRQSLTLLPSQIVRIEDVE----RNGSCFTDGVGTI 612
Query: 321 SAEFARKV--ASKCGLKDNP------PSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRK 371
S + AR+V GL S FQIR GG+KG+++ DPT + + +R SM K
Sbjct: 613 SPDLARQVDEVLSAGLPSRKRRHHAKSSCFQIRLGGFKGMLSVDPTLKQACVCVRPSMDK 672
Query: 372 YES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 429
+ S + LD+ ++++ P +LNR +I +L LGI +++F QRE V +++ T+
Sbjct: 673 FVSPDSLTLDIAGSFTRPLPAYLNRPMIKVLEDLGIHEQVFLALQREIVSKVEHSRTNLR 732
Query: 430 KAQEALELMSPGENT---NILKEL-LICGYKPDA------EPFLSMMLQTFRASKLLELR 479
+A E ++ +S + +IL++L + G + + E + M++Q FR +L+
Sbjct: 733 RASELMDQLSMARTSGMPSILRQLGTLMGDEGNTQSDFIEECYDLMIMQCFR-----DLK 787
Query: 480 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 539
+ RI + +++G DE + L V+ I G + F ++G
Sbjct: 788 YRARIPLDASYTLVGVADEDQVLPPNFVYACIQYPG----------------KAPFYLEG 831
Query: 540 LVVVAKNPCLHPGDVRVLKAVN------VPALHHMVDCVVFPQKGMRPHPNECSGSDLDG 593
+ ++++PCLHPGDVRV+ + P L+ + +CVVF GMR P+ G DLDG
Sbjct: 832 PITISRSPCLHPGDVRVVTGIGKLDLERAPRLNALRNCVVFSVAGMRSLPSCLGGGDLDG 891
Query: 594 DIYFVCWDDELIPP--QQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANA 651
D+Y + ELIP + PP YT + +LD IED +F +YI +D +G+IA+
Sbjct: 892 DLYTLITLPELIPATARLHPPASYTAPEMKRLDRPCTIEDGAAFFLDYISSDLVGVIASR 951
Query: 652 HTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIP--PHLYVKEYPDFM------ 703
H AD+ + R + CL+L S AVD+PKTGVP I P + PDFM
Sbjct: 952 HLHIADQADQGTRDDLCLELVSLHSDAVDYPKTGVPVAIDQLPRAPNRMKPDFMCPEHHE 1011
Query: 704 EKPDKPTYESQNVIGKLFRAV 724
+ YESQ V+GKLFR +
Sbjct: 1012 RREGDDYYESQKVLGKLFRQI 1032
>gi|336467963|gb|EGO56126.1| hypothetical protein NEUTE1DRAFT_64449 [Neurospora tetrasperma FGSC
2508]
gi|350289794|gb|EGZ71019.1| RdRP-domain-containing protein [Neurospora tetrasperma FGSC 2509]
Length = 1350
Score = 281 bits (720), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 204/645 (31%), Positives = 320/645 (49%), Gaps = 75/645 (11%)
Query: 139 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPR 198
GL ++R VTP+R+ GPE+ NR+LR F D+FLR+ F +ED DL
Sbjct: 408 GLTKIYRALVTPTRIELHGPELEAKNRILRKFPEHQDHFLRVQFGEED-----GQDLFFN 462
Query: 199 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA-----SRYGL 253
+ + D IY R L NGI +G R + FL FS S LR S W+ A R L
Sbjct: 463 SAVSMDA----IYQRFKDVLTNGISVGGRVYRFLGFSHSSLRAHSLWLAAPFIYNGRLQL 518
Query: 254 TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 313
A I E +G+F I++ A+ AAR+GQ+FS + ++S+ I++I + +I + + VF
Sbjct: 519 -ANNIIEGLGDFGNIKSPARRAARIGQAFSETPYSVSLDTHGIDVI--RQRDIKRNERVF 575
Query: 314 SDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKY 372
SDG+G +S + + P+ Q+R+ G KG++A D +++ +RDSM K+
Sbjct: 576 SDGVGIISQGALEVIHREIPESKGYPNCLQVRWAGAKGMLALDARLPGRQICIRDSMEKF 635
Query: 373 ----ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 428
E L D+ SK P LNRQ+I +L +G + F K Q + +++L AI +
Sbjct: 636 RSRDEEHLEICDMA--SKPIPLMLNRQMIKILEDMGAPAKWFMKLQEKELQRLRAITDNV 693
Query: 429 LKAQEALELMSPGENTNI---LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 485
L+L G++ ++ LK+L + FL +++ +L L+ K RI
Sbjct: 694 QNVATFLKLQCVGDSVHLSQFLKDLDKMNIDYRRDQFLRGIVEAVVLRELRLLKHKARIP 753
Query: 486 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 545
+P G ++ G +DET L G+V+V R G + G VVV +
Sbjct: 754 VPYGVTLFGVMDETGLLREGEVYVTFETVDGR-FKGPPT-------------AGPVVVTR 799
Query: 546 NPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDD 602
+P LHPGD+++ V PA H + +C+VF Q G R P++ SG DLDGD + V WD
Sbjct: 800 SPALHPGDIQIAYNVIPPAGHPLRELKNCIVFSQNGERDLPSQLSGGDLDGDTFNVIWDQ 859
Query: 603 ELIPPQQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPR 661
++ + P DY + ++L+ +V+ +D+ ++F ++ D LG+IA H + AD
Sbjct: 860 RIVSTLRTFPAADYPRVEPLKLNREVESKDMADFFVEFMKADHLGVIAVRHMILADERDE 919
Query: 662 KARSEPCLQLAEKFSIAVDFPKTGVPAEIP----PHLYVKEY----PDF---------ME 704
CL+LA S AVDF K+G+ +I P +Y ++ PD ME
Sbjct: 920 GTLDADCLKLAALHSKAVDFSKSGIHVDITELPRPPMYRPDFLVNGPDIKIHDKSTIDME 979
Query: 705 K-------------PDKPTYESQNVIGKLFRAVKDIAPHTSCIRL 736
+ P Y+S+ ++G LFRAV + T I+L
Sbjct: 980 EQYLKQDDDDGDDTPRYKYYKSEKILGHLFRAVDEKKIWTKNIKL 1024
>gi|154272513|ref|XP_001537109.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409096|gb|EDN04552.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1209
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 242/841 (28%), Positives = 381/841 (45%), Gaps = 160/841 (19%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 111
+PY + F++ LV NG ++ P +F V RA + I ++ + L L P
Sbjct: 321 MPYRVRFQLQKLVWNGDIS-PAKAISFASRV---RATLVIEDLDIVVRALMRLSSDVKWP 376
Query: 112 SR----------WLTDQYRKYMTSRSKPSSPAIS---LDDGLVYVHRVQVTPSRVYFCGP 158
S L + ++ + S ++ S ++ + +HR Q+TP Y GP
Sbjct: 377 SPDVEASEVDVPALVEVFKNALESTAREREMTRSNRPMNPNHISIHRAQITPCGTYLDGP 436
Query: 159 EINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTL 218
NRVLRH+ +D+FLR+ F+DE D + PR S D+ +R + L
Sbjct: 437 HAETKNRVLRHYSSHVDHFLRVEFVDETGDPVR---YDPRAS--IDMI---FESRFKTVL 488
Query: 219 RNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG----LTAAEIREWMGNFREIRNVAKY 274
++GI I RKFEFL FS S LR + W A Y A+ I + +G F I++ AK
Sbjct: 489 KSGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYKDRILYNASTIIQNLGRFDHIQSPAKQ 548
Query: 275 AARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL 334
AAR+GQ+FS + ++ + I I DV+ + VFSDG+G
Sbjct: 549 AARIGQTFSDTLTSIPISDKYISIGKDVE----RNGRVFSDGVGA--------------- 589
Query: 335 KDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYE--SELTKLDV-LAWSKYQPC 390
KG+++ D K L LR SM K+ + ++ + S +P
Sbjct: 590 ---------------KGMISLDSRKKGKSLVLRPSMIKFHLPNSYNAFNIEICGSGLKPL 634
Query: 391 --FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILK 448
FLN Q+I +L LG+ + +F + Q + + +L A T KA LE +TNI K
Sbjct: 635 PFFLNAQMIKILEDLGVDESVFLRLQADEISRLRATATSTAKAARFLE------DTNIAK 688
Query: 449 ELLI---------CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET 499
+ + G + + FL +++ KL +L+ + RI +PN ++ G +DET
Sbjct: 689 SVGLPWLINVLEGFGLRHSNDEFLRRVMELSVLIKLRDLKYRARIRVPNAVTLFGIMDET 748
Query: 500 RTLNYGQVF-VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLK 558
L G+VF +S G R++ +V VVV ++P +HPGDV++ +
Sbjct: 749 GILKEGEVFCTSLSDKGVREV----------------LVNPRVVVTRSPAMHPGDVQIAR 792
Query: 559 AVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDY 615
AV+VPA L + +C+ F Q G R P+ SG DLDGD+Y V +D+ L+P + P +Y
Sbjct: 793 AVDVPADSPLRQLHNCIAFSQHGHRDLPSMLSGGDLDGDLYNVIFDNTLLPKRIARPAEY 852
Query: 616 TPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKF 675
Q L V ED+ ++F ++ D LG IA H AD+ P CL LAE
Sbjct: 853 PRVQEKVLGRTVVREDIIDFFVTFMQQDQLGRIATIHQALADQRPLGTFDPECLLLAELH 912
Query: 676 SIAVDFPKTGVP---AEIP-------------PHLYVKEYPDFME--------------- 704
S AVDF KTGVP A IP P + + E +E
Sbjct: 913 STAVDFSKTGVPVDLARIPKFPSCRPDFQAPSPRIRIAENLSLLEGDMDAVQDGGDEDDD 972
Query: 705 -KPDKPTYESQNVIGKLFRAVKDIA-----------PHTSCIRLFTKEVARRSYD-PDME 751
+P Y+S+N++GKL+R++ ++ P C V R ++ E
Sbjct: 973 ERPAVRFYKSENILGKLYRSIDEVKFLQHRQSVMELPSAMC----APSVLRGVWEFVQRE 1028
Query: 752 VDGF--EDHIDDAIYHKGNYDYKLGNLMDYYGIK------TEAEILTGSIMKMSKSFTKR 803
+GF + HI+ A+ + Y+ L +M + TE E+ G+I+ + ++R
Sbjct: 1029 AEGFLWDHHIEHALDIRQIYEDNLLEIMARFSSTPWKSSITEYEVFVGTILGHGQKLSQR 1088
Query: 804 R 804
+
Sbjct: 1089 Q 1089
>gi|33331167|gb|AAQ10792.1| RNA-directed RNA polymerase-like protein [Branchiostoma floridae]
Length = 1005
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 164/411 (39%), Positives = 237/411 (57%), Gaps = 34/411 (8%)
Query: 486 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 545
+ +GR MMG +DET L YGQVF+Q S R++ + + + QG V V K
Sbjct: 600 VTSGRIMMGTMDETGKLQYGQVFIQYS----REVDKPQA--------DKVVHQGQVTVTK 647
Query: 546 NPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
NP HPGD+R AV+VP L HMVDC+VFP +G RPHP+E SGSDLDGD+YFV W + LI
Sbjct: 648 NPYFHPGDMRKFTAVDVPELRHMVDCIVFPSRGPRPHPDEMSGSDLDGDMYFVTWREGLI 707
Query: 606 PPQQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKAR 664
P+++ P MD+T L VQ D+ E+F YI ++ LG+IANAH V AD+E +
Sbjct: 708 LPRENRPAMDFTAQPKRVLHRPVQESDMIEFFAEYIGSNQLGLIANAHLVHADKEDQGIF 767
Query: 665 SEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAV 724
S+ C+ LA+ S AVD PKTG E+ L + YPDFM K DKP Y S+ +IG+LFR
Sbjct: 768 SQKCIDLAQLHSDAVDAPKTGQCPELKGDLRPEVYPDFMMKSDKPQYRSERIIGRLFRKC 827
Query: 725 KDIAPHTSCIRLFTKEVARRS--YDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGI 782
+++ ++ R T ++ + D D+ +GF+ +I+DA Y+ + ++M YGI
Sbjct: 828 QEL--DSANQRSGTDDIVYHTSRIDHDLVREGFDSYIEDAQTQLNIYNNMMMSIMSLYGI 885
Query: 783 KTEAEILTGSIMKMSKSFTKRRD-----AEAIGMAVRALRKEARAWF------KEKSGSD 831
+E E+++G I+K+ + ++ AE + + L ++ RA F +E S
Sbjct: 886 TSEGEVVSGCILKVKQRLGLLKNERFEVAEYVRARFKTLWRKTRAEFFKQFDVEELSEER 945
Query: 832 TEDDAYAKASAWYHVTYHPDYWGCYNQGMN-RDHFLSFPWCVYDRLVEIKK 881
+++ KASAWY VTY N+ ++ LSFPW VYD L +KK
Sbjct: 946 RKEEQLKKASAWYMVTYSD-----ANKPLDPSPKLLSFPWVVYDVLASLKK 991
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 107/255 (41%), Positives = 157/255 (61%), Gaps = 22/255 (8%)
Query: 136 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 195
L D VY +V VTP+++ F PE V NRV+R + +DNF+R++F DED K+
Sbjct: 363 LPDHYVYARKVVVTPTQMLFLKPEPIVENRVVREY--GVDNFIRVAFRDEDFSKL----- 415
Query: 196 SPRGSSATDITRTRIYT-RILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS--RYG 252
+ T+ R T R+ L GI IG+R F++L S+SQ+RE WM+A+ +
Sbjct: 416 -----AVTNPNSIRCVTSRVKDVLERGIRIGERHFKYLGSSNSQMREHGCWMYAAVDKTT 470
Query: 253 LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDE--IEIIPDVKIEIGKTK 310
+ ++IR WMG+ R VA Y +RLGQ FSSS+ +SV +++ +E+I DV+ G
Sbjct: 471 TSTSDIRGWMGDLSHERCVATYVSRLGQFFSSSRNAVSVSVEDRSVELIADVETSSGT-- 528
Query: 311 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT--SSKKLSLRDS 368
+ FSDGIGK+S A+KVA+ G+ PSAFQIRY G KGV+A DPT ++ ++ +R S
Sbjct: 529 HTFSDGIGKISVPLAKKVAAALGVSP-VPSAFQIRYAGCKGVLAQDPTLGNTDRIQIRGS 587
Query: 369 MRKYESELTKLDVLA 383
M+K+ESE L+V +
Sbjct: 588 MKKFESEHKTLEVTS 602
>gi|384495057|gb|EIE85548.1| hypothetical protein RO3G_10258 [Rhizopus delemar RA 99-880]
Length = 1125
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 231/829 (27%), Positives = 379/829 (45%), Gaps = 102/829 (12%)
Query: 75 DSNFYRLV---DPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRK--YMTSRSKP 129
D NFY+ + +PY A +S I +LY +P+ + + +++ Y+T +P
Sbjct: 309 DDNFYQAISNLEPYIACKLLSLISAGQRRLY-------DPNMSINNAFKRNPYITDPPEP 361
Query: 130 SSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDK 189
+ +G Y+ +V +TP+ VY P + N + F+R D FL I F DE+L
Sbjct: 362 ------IPEGYTYLRKVLITPTSVYPLQPILQKMNHLQYQFQRYSDRFLLIQFTDEELGP 415
Query: 190 IHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS 249
I SP + ++Y RI L+ G+++ R +EFL S LR+ S W FA
Sbjct: 416 IIP---SPHPNQ-----NDKLYNRIFKVLKRGLMLSGRYYEFLCSSLDDLRDHSCWFFAP 467
Query: 250 RYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKT 309
L +I W+G+F+EI V KY +GQ + +L + E+E I D +
Sbjct: 468 TDELNRDDIIYWLGDFQEISCVPKYIQSVGQVMAPRLTSLEIKPKEVEEIDDYE----HN 523
Query: 310 KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVA-ADPTSSKKLSLRDS 368
++S GK+S + AR+++S GLK P+ + G +G++ ++ +K+ LR
Sbjct: 524 GIIYSSECGKMSPQVAREISSLLGLK-YTPNVVKFNLAGARGILMLSNYLQKRKIQLRTG 582
Query: 369 MRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 428
+ +E L++ SK + +L+R I+LL+ LGI +F++ E V Q + ++ P
Sbjct: 583 QIHFNTERLTLEINKISKRERAYLDRYSITLLTGLGIHPVVFQQIT-EGVLQ-EYLMGGP 640
Query: 429 LKAQEALELMSPGENTNILK---ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 485
K LM + + K +L G+ ++P ++ ++ F+ L E++ T+I+
Sbjct: 641 QKENFLNHLMDEYYSDHFAKCFNRVLCSGFLERSDPLITNLVLAFQNKVLDEIKGNTKIY 700
Query: 486 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 545
I +G +DET +L +VF Q S S+ + ++ G ++ +
Sbjct: 701 IQDGARAFAVMDETGSLGENEVFFQTST-------------SAGLDSELNVIIGKCLIFR 747
Query: 546 NPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
N +P DV ++KAV+ P L + +++ R N CS D D +
Sbjct: 748 NSSCNPNDVMIVKAVDSPKLRSYTNVLIYSAVSSRHLLNICSHDDADEN----------- 796
Query: 606 PPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARS 665
++TP ++ DV ++ YI D +I +A ADR
Sbjct: 797 --------NFTP---------IKFGDVSKFIVKYISEDQTKLIKDAWVASADRHSTSIYH 839
Query: 666 EPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVK 725
L A++ SI + + KTG+ LY PDFME+ +Y+S+ +G + R VK
Sbjct: 840 GNALYFAQQLSIMIAYAKTGISVPTSEELYEYPIPDFMEQDSLMSYQSKKPLGYIHRIVK 899
Query: 726 DIA--PHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIK 783
I P+ S R YD + V+G I DA K YD L LM YGI
Sbjct: 900 TIEKRPYVS---------NRCEYDTRLYVEGMHKFILDARKTKMRYDNSLRLLMGEYGIC 950
Query: 784 TEAEILTGSIM---KMSKSFTKRRDAEAIGMAVRALRKEARAWF-----KE--KSGSDTE 833
+E E ++G I+ K + K+ + I MA + E + +F KE K S+ E
Sbjct: 951 SEIEFISGCIVHFPKYTSESDKKELTQKIKMAYIQFKNEWKKYFEFEFYKEDVKHLSEDE 1010
Query: 834 DDAY--AKASAWYHVTYHPDYWGCYNQGMN-RDHFLSFPWCVYDRLVEI 879
+ Y AKA+AWY+VTYHP Y + LSFPW + D +V I
Sbjct: 1011 LNCYVEAKAAAWYYVTYHPAENKEYQKNTEVLSRCLSFPWVIDDYIVYI 1059
>gi|299116728|emb|CBN76286.1| RNA-dependent RNA polymerase 2 [Ectocarpus siliculosus]
Length = 634
Score = 280 bits (715), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 215/671 (32%), Positives = 307/671 (45%), Gaps = 150/671 (22%)
Query: 137 DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS 196
+ G V V R VTP RV PE +SN V R F D FLR++F+DE++ ++ LS
Sbjct: 41 ETGNVMVPRASVTPLRVVCQPPEQEMSNGVTRRFAEHSDRFLRVNFVDENMGRLQ---LS 97
Query: 197 PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL-TA 255
P + R+ +++G++I RK+EFLA+S SQLR + + +A G TA
Sbjct: 98 PL-----------LVPRLEGFMKDGLVIAGRKYEFLAYSGSQLRGHACFFYAEGDGAPTA 146
Query: 256 AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSD 315
IR WMG+ I V K+AARLGQS SS+ T+ V +++PD K Y F+D
Sbjct: 147 DSIRSWMGDMSGIDVVGKHAARLGQSLSSTTSTVEVPPALKKLVPDKK----AGPYEFTD 202
Query: 316 GIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESE 375
G G +S AR G V P +
Sbjct: 203 GCGMMSEGLARG-----------------------GDVIPFPHAH--------------- 224
Query: 376 LTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL----TDPLKA 431
T + V+ +++ PC+LNRQ I+LL TLG+ D++ E++ V LD +L +DP +A
Sbjct: 225 -TPMQVIQYARQLPCYLNRQFITLLGTLGVPDKVIEERYSAMVSTLDKVLRTMLSDPAEA 283
Query: 432 QEAL----ELMSPGEN----TNILKELLI---CGYKPDAEPFLSMMLQTFRASKLLELRT 480
+ AL + S G+ L E L G EPFL +L+ R +++LR
Sbjct: 284 EMALVRYYNITSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRH 343
Query: 481 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL 540
+TRIF+P+ ++G +DET L G++S RS +
Sbjct: 344 RTRIFVPDASCLLGIVDETGLLQ----------------PGQASDSLGCRSVNHYTANRA 387
Query: 541 VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCW 600
+ M + F Q E SG DLDGD+Y V W
Sbjct: 388 SI-------------------------MTNADRFGQ-----CTQEMSGGDLDGDLYSVVW 417
Query: 601 DDELIPPQQD---------------PPMDYTPAQSMQLD-----HDVQIEDVEEYFTNYI 640
D +L+PP+++ P M Y P + + V ++++ ++F YI
Sbjct: 418 DQDLLPPEREGVAGVQGDSENGFNFPAMGYEPPEKPKTSASSSGKGVDMKEIADFFLKYI 477
Query: 641 VNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYP 700
ND+LG IANAH V AD P AR + CLQLA S AVDFPK+GVPA P L V YP
Sbjct: 478 QNDNLGKIANAHLVRADLSPFGARCDECLQLAALHSKAVDFPKSGVPAVFPDELKVDSYP 537
Query: 701 DFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHID 760
DFM K D TY S+ +IG+LFR D P + RR + + GFE +D
Sbjct: 538 DFMCKEDNMTYLSKKLIGRLFR---DTPPAGAA------NPQRRQQQDERFLGGFE--LD 586
Query: 761 DAIYHKGNYDY 771
++ G D+
Sbjct: 587 QSLLAPGYEDF 597
>gi|358397216|gb|EHK46591.1| hypothetical protein TRIATDRAFT_317554 [Trichoderma atroviride IMI
206040]
Length = 1395
Score = 280 bits (715), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 228/738 (30%), Positives = 337/738 (45%), Gaps = 91/738 (12%)
Query: 19 YKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNG----CVAGPLL 74
Y S RF GSA S L LP+ ILF++ LV N +A LL
Sbjct: 427 YTTSMSRFEGSIGSAGSGRTKL-----------LPFAILFQVQALVWNNYLHPAIATKLL 475
Query: 75 DSNFYRLVDPYRAPVSISCIEHALDKLYH------------------LKECCYEPSRWL- 115
D R+ + A+ +LY L E R L
Sbjct: 476 HLMTSVARDCKRSGTPLPFTTDAMKQLYQKIPYPCPGTEPQDLFEGELASIVVEAERALR 535
Query: 116 -TDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDI 174
DQ R P A ++ + VTP+R+ GP+ NRVLR F
Sbjct: 536 NEDQKRTLHYGAQLPRHQA--------WILKAMVTPTRITLHGPDAESMNRVLRMFPNHS 587
Query: 175 DNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAF 234
D F+R+ F DED + T +++ T ++ R L++GI + RKFEFL F
Sbjct: 588 DYFMRVIFGDEDGQDLALT---------SNVKNTLVFERYRKILKDGIQVAGRKFEFLGF 638
Query: 235 SSSQLRESSAWMFA-----SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 289
S S LR SAW A S I + +G+F +IR AK AAR+GQ+FS + +
Sbjct: 639 SHSSLRSHSAWFVAAFVDDSMNLQNNDTIIKSLGDFSDIRIAAKCAARIGQAFSETPYAV 698
Query: 290 SVHM--DEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYG 347
+ IE I DVK GK VFSDG+G +S + +V + + Q+R G
Sbjct: 699 PILKCGINIEYIDDVKTADGKR--VFSDGVGTISWDAMEEVWDHLPKASSEATCVQVRLG 756
Query: 348 GYKGVVAADPTSSKKLSL--RDSMRKYES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTL 403
G KG+++ D + K+ ++SM K+ S + T++ + SK +LNRQ I +L +
Sbjct: 757 GIKGMLSLDSRLNGKVICVRKESMMKFPSKDQTEMGICDTASKPMRTYLNRQTIKILEDM 816
Query: 404 GIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTN---ILKELLICGYKPDAE 460
G E F +Q +A+ L + T L+ G +++ L G E
Sbjct: 817 GTNSEWFIDQQNKALNVLRNVTTTAANTSTFLKNQMVGTTAGLPRLIRYLSTIGIDYRRE 876
Query: 461 PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLH 520
F+ ++ +L L+ K RI + G ++ G +DET L GQ++V + + + L
Sbjct: 877 RFMKKVVDHTILRELRLLKHKARIPVDMGVTLFGVMDETGFLEEGQIYVTFNES-HDHLQ 935
Query: 521 GESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQK 577
G +R + G V+V ++P LHPGD+++ + P H ++ +CVVF QK
Sbjct: 936 GRV---------KRSLKDGTVLVTRSPALHPGDIQLARMTTPPQGHPLRNLKNCVVFSQK 986
Query: 578 GMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFT 637
G R P++ SG DLDGD+Y V WD +IP Q P DY + +LD V +D+ ++F
Sbjct: 987 GSRDLPSQLSGGDLDGDLYNVFWDPFVIPKQYFGPADYPRVKPPELDRAVTRDDIADFFV 1046
Query: 638 NYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAE-----IPP 692
++ D LGIIAN H + AD + S C+ LAE S AVD+ KTG+ PP
Sbjct: 1047 KFMEADILGIIANRHQMLADYQDEGTLSADCVDLAEMHSTAVDYSKTGIAVRHQDMPKPP 1106
Query: 693 HLYVKEYPDFMEKPDKPT 710
+ PDF+ P PT
Sbjct: 1107 RM----RPDFL-APAPPT 1119
>gi|346973013|gb|EGY16465.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1310
Score = 280 bits (715), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 218/756 (28%), Positives = 349/756 (46%), Gaps = 111/756 (14%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFY---------RLVDPYRAPVSISCIEHALDKLY 102
+P+ +LF L N + + DS + R+ PVS A+ LY
Sbjct: 326 VPFRLLFLTQALASNNYLHPHVADSLLFCIRQAFSTARIAQQPHDPVS----AEAMKSLY 381
Query: 103 H--------LKECCYEPSRWLTDQYRKYMTSRSKPSSPAI--SLDDGLVYVHRVQVTPSR 152
++ +P + +K +R + + A + + +V + VTP+R
Sbjct: 382 QDIPYPYPGMEPSDLDPVALMAHLLKKEARTRKEAAMTAFKHTSNKNYAWVFKANVTPTR 441
Query: 153 VYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYT 212
+ GP NR+LR F + F+R+ F DE+ D I LS + ++ IY
Sbjct: 442 ITLHGPAYEPMNRILRKFPDHAEYFMRVQFCDENGDDIF---LSAK------VSNDHIYN 492
Query: 213 RILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYGLTAA--EIREWMGNFRE 267
R L++GI I R + FL FS S LR SAW F + G + I + +G+F
Sbjct: 493 RFRRVLQSGIQIAGRVYSFLGFSHSSLRSHSAWFSAPFVDKTGQLQSYVNIIKSLGDFEH 552
Query: 268 IRNVAKYAARLGQSFSSSKETLSV--HMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFA 325
IR AK AAR+GQ+FS + ++S+ H + IPDVK VFSDG+G +S +
Sbjct: 553 IRIPAKCAARIGQAFSETTSSVSLVDHGIVCQFIPDVKY----GNRVFSDGVGTISRDAL 608
Query: 326 RKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLR-DSMRKYESELTKLDVL- 382
+ ++ P+ QIR+GG KG+++ D + +++R +SM K+ S T LD L
Sbjct: 609 ETIWPHLPRMESLPTCLQIRWGGVKGMLSLDSRLPGRVMNIRQESMLKFPS--TDLDNLG 666
Query: 383 ---AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMS 439
A S+ LNRQ+I +L +G+ DE F Q+ + +L A+ D L+L
Sbjct: 667 ICGAASRPLRMVLNRQMIKILEDMGVRDEWFFSLQKRELERLRAVTADAWNTGAFLQLQG 726
Query: 440 PGEN---TNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL 496
G + +K L G + FL ++ +L L+ K RI +P G ++ G +
Sbjct: 727 IGSAFYLSTFIKTLDKYGINYRRDDFLRCTVEAVVLRELRLLKHKARIPVPQGVTLFGIM 786
Query: 497 DETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRV 556
DET L+ G+V+V S ++ S + G ++V ++P LHPGD++
Sbjct: 787 DETGFLSEGEVYVCYD-----------SRYNGSLPIDSTLSDGNILVTRSPALHPGDIQW 835
Query: 557 LKAVNVPALHHMVD---CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPM 613
++ P H + D C+VF Q G R P++ SG DLDGD+Y + WD + P + P
Sbjct: 836 VRMRTPPVGHPLRDLRNCIVFSQHGERDLPSQLSGGDLDGDLYNIIWDRQARPKRFFAPA 895
Query: 614 DYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAE 673
DY +L+ V +D+ +F N++ +D LG+IA H + AD++ C+ AE
Sbjct: 896 DYPRITPTELNRQVTRDDMAGFFVNFMKSDVLGMIATKHLILADQKEEGTLDADCIIFAE 955
Query: 674 KFSIAVDFPKTGVPAEI-------------------------PPHLYV-KEYPDFMEKPD 707
S AVDF KTG+P ++ PP YV ++ DF+EKP
Sbjct: 956 MHSTAVDFSKTGIPVDMQAMPKTNRIRPDLYSELTAHSFAPAPPTQYVDRQQIDFVEKPS 1015
Query: 708 --------------KPT---YESQNVIGKLFRAVKD 726
+P Y S ++G+L+R + +
Sbjct: 1016 ASFYGGEDEEEDAFRPAHKFYRSGKILGRLYRNIDE 1051
>gi|295668891|ref|XP_002794994.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226285687|gb|EEH41253.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1142
Score = 279 bits (714), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 229/755 (30%), Positives = 343/755 (45%), Gaps = 163/755 (21%)
Query: 49 GIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKL------- 101
G LPY ++F++ LV NG ++ P+ +F V+ + + ALDKL
Sbjct: 315 GGDLPYRVMFQLQKLVWNGAIS-PVNAISFAYRVEKELVDADLDVVVQALDKLERDIQWS 373
Query: 102 --------YHLKECCYEPSRWLTDQYRKYMTSRS-KPSSPAISLDDGLVYVHRVQVTPSR 152
+ + L R+ SRS +P P + +HR QVTP
Sbjct: 374 SPDVQASEVDVVALMKLFANALEIVVREKALSRSNRPIHP------NNILIHRAQVTPCG 427
Query: 153 VYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYT 212
+Y GP++ NRVLR + ++D+FLR+ F+DE D + R S + +
Sbjct: 428 IYLYGPQLETKNRVLRIYEANVDHFLRVEFVDESGDPV-------RYDSRASVDAI-FQS 479
Query: 213 RILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYGL-TAAEIREWMGNFREI 268
R L+ GI I RKFEFL FS S LR + W F S L A I + +G F I
Sbjct: 480 RFKGVLKEGITIAGRKFEFLGFSHSSLRSQTCWFVAPFVSGGTLYNATVIIQNLGRFDHI 539
Query: 269 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV 328
+ AK AAR+GQ+FS + ++ + D + + DV+ + +FSDG+G +S
Sbjct: 540 HSPAKQAARIGQTFSDTLTSIPISFDMLSVGEDVE----RNGRIFSDGVGTISP------ 589
Query: 329 ASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQ 388
F I+ S K + +++ EL + K
Sbjct: 590 -------------FLIK-------------SMVKFPVPETVGGLNIELCGSGL----KAL 619
Query: 389 PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILK 448
P FLN QLI +L LG+ F K Q + + +L A T P AQ A L E+T+I K
Sbjct: 620 PFFLNAQLIKILEDLGVEQSAFLKLQADEIERLRA--TAPSTAQAARFL----EDTHIAK 673
Query: 449 ELLICGYKPDAEPFLSMMLQTFRAS-----------------KLLELRTKTRIFIPNGRS 491
+ + P+L +L+ FR S KL +L+ + RI +PN +
Sbjct: 674 SIGL--------PWLISILEGFRLSHTDDEFLRRVMELAVLIKLRDLKYRARIRVPNAVT 725
Query: 492 MMGCLDETRTLNYGQVF-VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLH 550
+ G +DET L G++F V +S G+R++ +V+ VVV ++P +H
Sbjct: 726 LFGIMDETGILKEGEIFCVTLSEDGHREV----------------LVRPRVVVTRSPAMH 769
Query: 551 PGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 607
PGDV+V KAV+VPA L + +C+ F Q G R P+ SG DLDGD+Y V +D+ LIP
Sbjct: 770 PGDVQVAKAVDVPADSPLRQLHNCIAFSQYGDRDLPSMLSGGDLDGDLYNVIYDETLIPK 829
Query: 608 QQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEP 667
PP +Y + L+ V +D+ ++F ++ D LG IA H AD+ R E
Sbjct: 830 ITVPPAEYPRVEEKVLNRPVVTDDIIDFFVTFMQQDQLGRIATIHQAIADQRDRGTFDEQ 889
Query: 668 CLQLAEKFSIAVDFPKTGVP---AEIPPHLYVKEYPDFM--------------------- 703
CL LAE S AVDF K+GVP A IP + + PDF
Sbjct: 890 CLLLAELHSTAVDFSKSGVPVDLARIPK--FPRYRPDFQAHGPRVRIAESLSLFEEDEET 947
Query: 704 -----------EKPDKPTYESQNVIGKLFRAVKDI 727
E+P Y+S ++GKL+R++ ++
Sbjct: 948 TAQDLHDDEDDERPPTRFYKSYKILGKLYRSIDEV 982
>gi|320593975|gb|EFX06378.1| RNA-dependent RNA polymerase [Grosmannia clavigera kw1407]
Length = 1259
Score = 279 bits (714), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 221/734 (30%), Positives = 346/734 (47%), Gaps = 78/734 (10%)
Query: 52 LPYEILFKINLLVQNGCV-AGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 110
LP+ ILF++ L N + + D +V APVS+ ++ + +
Sbjct: 298 LPFSILFQLQALAWNAFLYPDTVADLASELVVLQKTAPVSVDAMKMLFTDIGWPTPNDAD 357
Query: 111 PSRWLTDQYRKYMTSRSKPSSPAISLDDGLVY-------VHRVQVTPSRVYFCGPEINVS 163
PS++ ++ + + ++ +GL+ + RV VTP+R+ GPE
Sbjct: 358 PSQFEVPALVAHLLKKEREIRSGYAIREGLLSPSENLAPICRVSVTPTRILLYGPEFEKK 417
Query: 164 NRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGIL 223
NRVLR F D F+R+ F DE+ D + L R +S ++Y R + ++NGI
Sbjct: 418 NRVLRKFPNQHDCFIRVQFCDENGDSLR---LLGRRTSYE-----KVYKRFIDIMKNGIQ 469
Query: 224 IGDRKFEFLAFSSSQLRESSAWMFA-----SRYGLTAAEIREWMGNFREIRNVAKYAARL 278
I R ++FL +S S LR S W A + T I +G+F IR+ AK AAR+
Sbjct: 470 IVGRTYKFLGWSHSSLRAHSMWFTAPFIDDTGRLQTHLTIISTLGDFAGIRSPAKCAARI 529
Query: 279 GQSFSSSKET--LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD 336
GQ+FS + LS H + ++ DVK + GK +VFSDG+G +S + A V
Sbjct: 530 GQAFSETPYAVPLSEHKISVMLVDDVKSKDGK--HVFSDGVGTISLDAAAAVWKYVPKSK 587
Query: 337 NPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYES-ELTKLDVLAWSKYQPCFLNR 394
P+ FQ+RY G KG+++ D ++ LR SM K+ES E L++ +K P +LNR
Sbjct: 588 RNPTCFQVRYAGAKGMLSLDTRLQGSQILLRPSMIKFESNETENLEICDVAKAMPLYLNR 647
Query: 395 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICG 454
Q+I +L + + + F + Q +A++QL I + L+ S G + + K LL+
Sbjct: 648 QMIKILEDMSVPRKWFLRLQNDALQQLRLIASSAYNMAYFLKHQSVGTSIKLHKLLLLTD 707
Query: 455 YKPD---AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI 511
EPFL + +L L+ K RI +P G ++ G +DET L GQV+V
Sbjct: 708 KLGLDYRTEPFLRRAAEAVVLRELRLLKHKARIPVPFGITLFGVMDETEFLAKGQVYVT- 766
Query: 512 SGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH---HM 568
+ G R Q ++V ++P LHPGD++ + P H +
Sbjct: 767 ----FETKQG----LKPQRFEQPPGHAVYLLVTRSPALHPGDIQWACNMIPPEGHPLREL 818
Query: 569 VDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP---PMDYTPAQSMQLDH 625
+CVVF KG R P++ SG DLDGDI+ + WD E+ P + +Y +
Sbjct: 819 SNCVVFSAKGARDLPSQLSGGDLDGDIFNLIWDREVCRPVELKTYRAAEYARVPPQNIWR 878
Query: 626 DVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTG 685
+VQ ED+ ++F +++ D LG IA H + AD++ C+ +AE S AVDF KTG
Sbjct: 879 EVQTEDIAQFFIDFMKTDHLGTIATRHMILADQKEMGTLDSDCIAMAELHSTAVDFSKTG 938
Query: 686 VPAEIPPHLYVKEY-PDFM-----------------------------EKPDKPT---YE 712
+PA++ + PDF+ E D P Y
Sbjct: 939 IPADLNELRRASPFRPDFLAPGSLVYVHNKADIELEKYVANNERDVHAEALDGPAHKYYR 998
Query: 713 SQNVIGKLFRAVKD 726
S+ V+G L+RAV +
Sbjct: 999 SEKVLGVLYRAVDE 1012
>gi|115436872|ref|XP_001217666.1| predicted protein [Aspergillus terreus NIH2624]
gi|114188481|gb|EAU30181.1| predicted protein [Aspergillus terreus NIH2624]
Length = 1039
Score = 279 bits (714), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 218/738 (29%), Positives = 346/738 (46%), Gaps = 95/738 (12%)
Query: 52 LPYEILFKINLLVQNGCV---AGPLLDSNFYRLVDPYR----APVSISCIEHALDKLYHL 104
LP+ +L+++ LV N + +L S + R AP+S + L+ ++
Sbjct: 284 LPFGVLYQLQALVYNAYLHPTTVQILGSKLCAISQDRRQRGLAPISADAVRTLLNTVHWA 343
Query: 105 ----KECCYEPSRWLTDQY--RKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGP 158
++P L R+ R+ S + L V +HRV V+P+R+ F GP
Sbjct: 344 LPFDNPEVFQPDSLLATLRLDREAKMERTTQKSVSADLSSDHVLIHRVSVSPARITFHGP 403
Query: 159 EINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL--SPRGSSATDITRTRIYTRILS 216
E NRV+R F R F+R+ F DE +DL +P+ +I+ R +
Sbjct: 404 EREPQNRVIRKFPRHHAYFIRVQFCDE-----RGSDLFFNPKHDYE------QIFQRFRT 452
Query: 217 TLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY------GLTAAEIREWMGNFREIRN 270
L GI I R + FL FS S LR S W F+S + T++ I + +GNF I +
Sbjct: 453 VLTLGIQIAGRTYTFLGFSHSSLRSHSVW-FSSPFIDGDGSLQTSSSIIKALGNFSGITS 511
Query: 271 VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS 330
A+ AAR+GQ+F+ + TL V +E I D I VFSDGIG +S E ++
Sbjct: 512 PARCAARIGQAFTETPFTLPVQNVVVEYIED--ITSSDESRVFSDGIGTISLEVVERIWK 569
Query: 331 KCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESE-LTKLDVLAW-SKY 387
K P+ FQ+R GG KG+++ D + +R SM K+ ++ + L + S+
Sbjct: 570 GIPQKKGTPTCFQVRLGGAKGMLSLDSRLEGSVIRIRPSMVKFSTDDMRDLGICGMASEP 629
Query: 388 QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNIL 447
P LNRQ++ +L +G+ D+ F Q + +RQL I + K L+ ++ +
Sbjct: 630 YPLVLNRQIVKILEDIGVPDDWFFGLQNDRLRQLQLISSSADKTATFLKDAKIADSIGLY 689
Query: 448 KELLIC-----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL 502
K C Y+ D PFL +++ +L L+ K+RI +P G ++ G +DET L
Sbjct: 690 KLFRWCYWMDLDYRED--PFLRSIVEAMILRELRLLKHKSRIPVPQGMTLYGIIDETGYL 747
Query: 503 NYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNV 562
+VF+ S L+++ G V+V ++P L+ GD++V + V
Sbjct: 748 KENEVFITFDTI--------SGLYAAPPG------PGPVLVTRSPALYDGDIQVARNVVP 793
Query: 563 PALHHMV---DCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQ 619
P H + +C++F Q+G R P++ SG DLDGD+Y V WD + PP +Y
Sbjct: 794 PPDHPLARHKNCIIFSQQGARDLPSQLSGGDLDGDLYHVIWDPIVAKVHTSPPANYARVV 853
Query: 620 SMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAV 679
+ V +D+ +F ++ D +GIIA H + AD+EP + C LAE S AV
Sbjct: 854 PHDIGRVVTTKDMAYFFVEFMKTDCVGIIATRHMILADQEPEGTHASGCKLLAELHSTAV 913
Query: 680 DFPKTGVP---AEIPPHLYVKEYPDFME------------------------KPDKPT-- 710
D+ K+GVP A+IP + PDFM D P+
Sbjct: 914 DYSKSGVPVDMAKIPSTGRFR--PDFMAPGPLAQVYSKSKITLTELSSHAAYDEDGPSHI 971
Query: 711 --YESQNVIGKLFRAVKD 726
Y+S ++GKL+RA+ +
Sbjct: 972 LYYKSDRILGKLYRAIDE 989
>gi|353235420|emb|CCA67433.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora
indica DSM 11827]
Length = 1169
Score = 279 bits (714), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 209/640 (32%), Positives = 331/640 (51%), Gaps = 67/640 (10%)
Query: 126 RSKPSSPAISLDD-GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 184
RS+ ++ A S ++ G+ HR VTPS V GP + +NRV+R +R NF+R+ F +
Sbjct: 365 RSRGTAKARSDEESGVFECHRATVTPSSVVLTGPLPDETNRVIRKYRAYGHNFIRVDFTE 424
Query: 185 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 244
ED ++H R D+T + RI ++NG+ + RKFE LA+SSS L+E +
Sbjct: 425 ED--RLHL-----RKEKNVDLTAI-LDDRIGEFMKNGLSVAGRKFELLAYSSSALKEHAV 476
Query: 245 WM---FASRYG--LTAAEIREWMGNFRE-IRNVAKYAARLGQSFSSSKETLSVHMDEIEI 298
W F + G +T+ IR +G+F + I A+Y ARL Q+FSS++ +++V +DEI
Sbjct: 477 WFMTPFTTSDGQYITSESIRRSLGDFSKVIYCPARYGARLSQAFSSTEPSITVRVDEIRF 536
Query: 299 IPDVKIEIGKTKYVFSDGIGKVSAEFARKV--------ASKCGLKDNPPSAFQIRYGGYK 350
IPD + + G +++DG+G +S + A+++ + + + PSAFQIR GG K
Sbjct: 537 IPDKESDYGS---LYTDGVGTISPQAAKEIWHKYTESRSKRNRRRLKRPSAFQIRLGGLK 593
Query: 351 GVVAADP-TSSKKLSLRDSMRKYESELTKLDVL-AWSKYQPCFLNRQLISLLSTLG-IWD 407
G++ D + + +R+SM K+ S+ ++++ + + FLNR LI LL TL +
Sbjct: 594 GMLCVDNRLRGRVICVRESMNKFHSDDREVEIARVFDRPMAMFLNRPLIMLLETLKKVPL 653
Query: 408 EIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN---TNILKELLICGYKPDAE---- 460
E F Q +AV + + A LE G T++ +L G +
Sbjct: 654 EPFMALQTKAVEETRDAMKSFDAAARILERYGLGTAFRLTSVFLQLHKLGVSLALKDRSQ 713
Query: 461 ---PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR 517
PFL MLQ L +L+ K RI +PN +++G DE L +++ ++ R
Sbjct: 714 GLLPFLGRMLQFVENHILRDLKYKARIPVPNAWTLVGVSDEYDYLGENEIYARV-----R 768
Query: 518 QLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA------LHHMVDC 571
+ GE ++G V+++++P +HPGD R++ A+ P+ L + +C
Sbjct: 769 TIDGEEQY-----------LEGPVMISRSPTVHPGDARMVWAIGKPSRGAPPGLEELTNC 817
Query: 572 VVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIED 631
VVFP KG P +G DLDGD+Y + D +L Q DY P Q + LD I+D
Sbjct: 818 VVFPCKGHPSLPQCLAGGDLDGDLYCLVLDPQLHFRWQFQHGDYDPPQLVTLDRPSTIKD 877
Query: 632 VEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTG--VPAE 689
V ++ NYI ND LGII+ + AD C++LA+ SIAVD+PKTG V +
Sbjct: 878 VAQFVVNYIKNDLLGIISMQCMLIADVRKDCLADPDCVKLAKLHSIAVDYPKTGRHVESS 937
Query: 690 IPPHLYVKEYPDF----MEKPDKPTYESQNVIGKLFRAVK 725
P L + PD+ + + Y+SQ IG LFRA++
Sbjct: 938 EIPWLDSRRRPDWYANELHNNNPDLYQSQRHIGHLFRAIE 977
>gi|310795671|gb|EFQ31132.1| RNA dependent RNA polymerase [Glomerella graminicola M1.001]
Length = 1313
Score = 279 bits (714), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 198/633 (31%), Positives = 307/633 (48%), Gaps = 66/633 (10%)
Query: 141 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 200
V V + VTP+R+ GPE NRVLR F F+R++F DED + +PR
Sbjct: 440 VQVFKAMVTPTRITLHGPEPEPLNRVLRRFPDHTSYFMRVTFCDEDGGDLF---FNPR-- 494
Query: 201 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTA----- 255
++ +I+ R L GI I R ++FL FS S LR SAW A T
Sbjct: 495 ----VSYDQIFDRYRKVLNGGIPIAGRVYQFLGFSHSSLRSHSAWFSAPFVDSTGKLQLY 550
Query: 256 AEIREWMGNFREIRNVAKYAARLGQSFSSSKE--TLSVHMDEIEIIPDVKIEIGKTKYVF 313
A I + +G+F I+ AK AAR+GQ+FS + LS H IPDVK GK + VF
Sbjct: 551 ANIIKSLGDFDHIQIPAKCAARIGQAFSETPAFINLSEHRIRHWDIPDVKSHDGKIQRVF 610
Query: 314 SDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLR-DSMRK 371
SDG+G +S E V + + P+ QIR+GG KG+++ + S + + +R +SM K
Sbjct: 611 SDGVGTISQEAIELVWPRLPQRSLIPTCLQIRWGGVKGMLSLESRLSGRSICIRRESMEK 670
Query: 372 YES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 429
+ S ++ L++ A SK LNRQ+I ++ LG+ F + Q+ + +L A+ D
Sbjct: 671 FPSTDVQNLEICDAASKPLKLVLNRQMIKIMEDLGVDKNFFLRLQKNELDRLRAVTADAY 730
Query: 430 KAQEALELMSPGEN---TNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 486
L L G +K L G + FL ++++ +L L+ K RI +
Sbjct: 731 NTGTFLHLQGVGSAFFLPTFIKSLEKYGIDYRRDDFLRAVVESTVLRELRLLKHKARIPV 790
Query: 487 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 546
P G ++ G +DET L G+V+V ++ +R + G V+V ++
Sbjct: 791 PQGATLFGVMDETGFLKEGEVYVCY----------DTYKSPGKAPTERSLRDGRVLVTRS 840
Query: 547 PCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
P LHPGD+++ P H ++ +CV F Q G R P++ SG DLDGD+Y + WD +
Sbjct: 841 PALHPGDIQLANMRTPPPGHPLRNLRNCVAFSQHGQRDLPSQLSGGDLDGDLYNIIWDKQ 900
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
+P DY L V +D+ +F +++ +D LG+IA H + +D++
Sbjct: 901 AMPRWICKAADYPRVTPEPLGRPVTRDDMANWFVDFMKSDVLGLIATRHLILSDQDQEGT 960
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAEI------------------PPHLYVKEYPDFM-- 703
CL+LAE S AVDF KTG+ E P LY + + DF+
Sbjct: 961 MGRNCLKLAELHSTAVDFSKTGIAVEQREIPKAPRFRPDFLAPAPPAQLYDRTHIDFIDE 1020
Query: 704 ----------EKPDKPTYESQNVIGKLFRAVKD 726
+ P+ Y+S+N++G+L+R V +
Sbjct: 1021 DEAVDDDEDAQGPNHKYYKSENILGQLYRNVNE 1053
>gi|452977804|gb|EME77568.1| hypothetical protein MYCFIDRAFT_60792 [Pseudocercospora fijiensis
CIRAD86]
Length = 1015
Score = 279 bits (714), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 188/582 (32%), Positives = 303/582 (52%), Gaps = 50/582 (8%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
+H+V VTP+ + GPE +NRVLR + +ID+F+R+ F DE + PR
Sbjct: 210 IHKVIVTPAGIRLEGPEPEPTNRVLRKYAENIDDFVRVVFQDEHGGPVR---YDPR---- 262
Query: 203 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTAAE 257
TD+ R + R + L I+I R F FL FS S LR S W F +R G + A +
Sbjct: 263 TDLARI-YHERFRNVLDTSIVICGRGFSFLGFSHSSLRSQSCWFMAPFVNRNGRLIFAEK 321
Query: 258 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGI 317
+ + +G+F IR AK AAR+GQ+F+ + T+ + D++ D+++ I + FSDG+
Sbjct: 322 VLKGLGDFSSIRTPAKCAARIGQNFTDTNATVHLEPDQVF---DLQV-IERNGRDFSDGV 377
Query: 318 GKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESE 375
G +S R+V + G K P+ QIR+ G KG+V+ DP K L LR +MRKY++E
Sbjct: 378 GTISEALLREVWRRYGTKKMLKPTVLQIRFQGAKGMVSLDPRLPGKALMLRANMRKYDTE 437
Query: 376 LTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEKKQREA---VRQLDAILTDPLK 430
+ + + + ++P LN+Q I + LGI +F QR A +RQ+ A+ + K
Sbjct: 438 TSWVLEICGAGFKPLPMVLNQQFIKIFEDLGIPMSVFLDLQRSAMKHLRQMTALSVNSAK 497
Query: 431 AQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 490
E + ++++L G+ + FL +++ ++L +++ + RI + G
Sbjct: 498 LLEDSGIARATGMPRLIRDLAQIGFDYHEDHFLYSIVEMAVVTQLRDIKYRARIPVEAGV 557
Query: 491 SMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLH 550
++ G +DET L GQ+FV A H +++ VV+ ++P +H
Sbjct: 558 TLYGIMDETGYLKEGQIFVITEKAPEGGKH--------------ILIKDKVVITRSPAMH 603
Query: 551 PGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 607
PGD++V+ AV+VP L + + VVF + G R P++ SG DLDGDIY + W + ++P
Sbjct: 604 PGDIQVVDAVDVPPNSLLRRLSNVVVFSKWGDRDLPSKLSGGDLDGDIYNIIWHEGMVPR 663
Query: 608 QQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEP 667
DY + LD +V I+D+ ++F ++ D LG+I H AD+ +
Sbjct: 664 TTYTAADYPRVSPLVLDREVTIKDMSDFFVTFMETDLLGMICTTHKQLADQREAGSLDPD 723
Query: 668 CLQLAEKFSIAVDFPKTGVP---AEIP---PHLYVKEYPDFM 703
CL LA S AVD+ KTG+ +IP H++ PDFM
Sbjct: 724 CLTLAGLASTAVDYSKTGISVKHTQIPRNDKHIF---RPDFM 762
>gi|222629015|gb|EEE61147.1| hypothetical protein OsJ_15104 [Oryza sativa Japonica Group]
Length = 335
Score = 279 bits (713), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 154/322 (47%), Positives = 200/322 (62%), Gaps = 21/322 (6%)
Query: 568 MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDV 627
MVDC+VFPQ+G RPHPNECSG DLDGD+YF+ WDD+LIP + D PMDYT + +DH V
Sbjct: 1 MVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTPMDYTATRPRIMDHVV 60
Query: 628 QIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVP 687
+E+++++F +Y++NDSLG I+ AH + ADR P KARS CLQLA S+AVDF KTG P
Sbjct: 61 TLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGAP 120
Query: 688 AEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRS-- 745
AE+P L +EYPDFME+ +KP Y S V+GKL+R+ + + A+ S
Sbjct: 121 AEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPSPT 180
Query: 746 YDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD 805
YDPD+EV G ++ + A + Y+ KL LM+YY + E EILTG+I +K +RD
Sbjct: 181 YDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDEILTGNI--RNKMLYLKRD 238
Query: 806 -------AEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQ 858
+ I AV AL +EAR W S E+DA ASAWY VTYHPD +
Sbjct: 239 NKRYFEMKDRIVAAVDALHREARGWLL---SSRKEEDASRMASAWYRVTYHPD----RRR 291
Query: 859 GMNRDHFLSFPWCVYDRLVEIK 880
G F SFPW D L+ IK
Sbjct: 292 G---KRFWSFPWIACDNLLAIK 310
>gi|398389633|ref|XP_003848277.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
gi|339468152|gb|EGP83253.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
Length = 1234
Score = 278 bits (711), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 198/596 (33%), Positives = 302/596 (50%), Gaps = 51/596 (8%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
VH+V V P+ + GPE +NRVLR + + D FLR+ F DED + PR
Sbjct: 423 VHKVVVMPTGLRLEGPEPEPTNRVLRRYAKYTDFFLRVEFRDEDGATVR---YDPR---- 475
Query: 203 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS-------RYGLTA 255
TD+ R + R + L + ILI R F FL FS S LR S W A RY A
Sbjct: 476 TDLHRV-YHGRFKTVLDSSILISGRAFSFLGFSHSSLRSQSCWFMAPFVFNGSLRY---A 531
Query: 256 AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSD 315
+ + +G F+ IR AK AAR+GQ+F+ + ++ + +++ + DV+ + FSD
Sbjct: 532 DHVLQDLGEFKMIRTPAKCAARIGQNFTDTNTSVELRPEQVYWLNDVE----RNGRTFSD 587
Query: 316 GIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYE 373
G+G +S E + V G + P+ QIR+ G KG+V+ D K L+LR SMRK++
Sbjct: 588 GVGIISMELLQSVWRVYGTRRLLKPTILQIRFQGCKGMVSLDTRLRGKCLALRKSMRKFQ 647
Query: 374 SELT-KLDVLAWS-KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA 431
+E T L++ + + P LNRQ + LGI +F Q+++V +L + +
Sbjct: 648 TETTWDLEICGAAFRPLPMILNRQFTKIFEDLGIPLSVFMDLQQKSVDKLRRMTHSAINT 707
Query: 432 QEAL---ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN 488
L E ++++ L G +PFL +++ SKL +++ + RI I +
Sbjct: 708 ANFLDETECTKAARVPSLIRYLGQMGLDYRHDPFLYNVVEMSVVSKLRDIKYRGRIPIDD 767
Query: 489 GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 548
G ++ G +DET L ++FV A L G S L V+ V+V ++P
Sbjct: 768 GVTLYGIMDETGVLKANEIFVVTEKA---PLGGRSVL-----------VRNNVIVTRSPA 813
Query: 549 LHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
+HPGDV+++ AV+VP L + + VVF Q G R P+ SG DLDGDIY V W +L+
Sbjct: 814 MHPGDVQIVNAVDVPQGSPLRQLSNVVVFSQHGDRDLPSMLSGGDLDGDIYNVIWLPQLV 873
Query: 606 PPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARS 665
P DY + +LD DV +D+ ++F ++ +D LG+I AH AD+ R
Sbjct: 874 PEVTYDAADYPKVPTEELDRDVNRKDMSDFFVKFMESDQLGMICTAHLQIADQRERGVLD 933
Query: 666 EPCLQLAEKFSIAVDFPKTGVP---AEIPPHLYVKEYPDFMEKPDKPTYESQNVIG 718
C++L+ S AVDF KTG+P A++P Y + PDFM + Q I
Sbjct: 934 PDCIKLSAMASTAVDFSKTGIPVNLAQMP--RYDRCKPDFMAPSPRVIVSEQGYIA 987
>gi|403177737|ref|XP_003336185.2| hypothetical protein PGTG_17766 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375173183|gb|EFP91766.2| hypothetical protein PGTG_17766 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1297
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 208/635 (32%), Positives = 321/635 (50%), Gaps = 82/635 (12%)
Query: 138 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN-FLRISFIDEDLDKIHSTDLS 196
+G+ V +TP+ + GP N +LR + D ++ F+R++ +ED H D
Sbjct: 478 EGIFKCRTVTITPTSLVLDGPCAEQGNSILRFY--DFNSAFIRVALREED-GAPHRWD-- 532
Query: 197 PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYGL 253
++ ++ L N +L+ R+FEFL +S+S LR AW F R L
Sbjct: 533 ------RNVDLPEFFSHRYRPLANCLLLAGRQFEFLCYSASALRSHQAWFVCPFIHRGEL 586
Query: 254 -TAAEIREWMGNFREIRNV-AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY 311
TA +IR +G+F ++ N+ A+Y AR+GQ+F+++++ +++ +I++I DV+ +
Sbjct: 587 ITATKIRNRIGSFPKVINIPARYMARVGQAFTTTRKAVTLQPSQIKLIEDVE----RNGS 642
Query: 312 VFSDGIGKVSAEFARKV----ASKCGLKDNPP-----SAFQIRYGGYKGVVAADPT-SSK 361
VF+DG+G +S A+KV A G K PP S +QIR GGYKG+++ D T
Sbjct: 643 VFTDGVGTISLSLAKKVEHALAGPTGSK--PPTELQASCYQIRLGGYKGMLSLDTTLEGD 700
Query: 362 KLSLRDSMRKYESELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQ 420
+ LR SM+K+E E LD+ + + P FLNRQLI +L LGI ++F Q E V
Sbjct: 701 IVRLRPSMKKFEGESYTLDIAEKFDRPFPAFLNRQLIKILEDLGISGQVFLDAQAETVAM 760
Query: 421 LD---AILTDPLKAQEALELMSPGENTNILKEL--LICGYKPDAE--PFLSMMLQTFRAS 473
++ + E L S E ILK+L L+ +P+ F+ L
Sbjct: 761 VENSQGSMNQSSLVMERAGLGSAVELPQILKQLGRLMDSDRPEEIRCSFVQDSLDLLAVH 820
Query: 474 KLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ 533
L EL+ TRI +P +++G DE L Q+FV I G R
Sbjct: 821 CLRELKYNTRIPLPGSFNLVGVADEDGCLLENQIFVPIQLPGQR---------------- 864
Query: 534 RFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA-----LHHMVDCVVFPQKGMRPHPNECSG 588
++ ++G +A++PCLHPGD++V+ A+ P L +V+CVVFP G R P+ +G
Sbjct: 865 KYCLKGRFAIARSPCLHPGDIQVVYAIGDPPVGSRRLASLVNCVVFPVIGKRSLPSCLAG 924
Query: 589 SDLDGDIYFVCWDDELIPPQQD--PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLG 646
DLDGD+Y + D +++P + P Y Q + I D ++F +YI+++ +G
Sbjct: 925 GDLDGDLYTIITDPQMVPDSRRIYQPGSYESGQMKTTESPCTIHDGIDFFFHYILDNIVG 984
Query: 647 IIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTG--VPAEIPPHLYVKEYPDFM- 703
+IAN HT+ AD+ CL LAE S AVD+PKTG VP P K PDFM
Sbjct: 985 MIANKHTIIADQADEGVLDRKCLDLAELHSQAVDYPKTGMAVPVTKIPRCSPKR-PDFMC 1043
Query: 704 ------------EKPDKP--TYESQNVIGKLFRAV 724
EK + TY S ++G+LFRA+
Sbjct: 1044 PEYMFNDHLSDKEKAQQAERTYPSPKILGQLFRAI 1078
>gi|380493792|emb|CCF33621.1| RNA dependent RNA polymerase, partial [Colletotrichum higginsianum]
Length = 1278
Score = 276 bits (707), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 219/748 (29%), Positives = 350/748 (46%), Gaps = 94/748 (12%)
Query: 126 RSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE 185
RS P + LV+ + VTP+R+ GPE NR+LR F F+R++F DE
Sbjct: 428 RSALLEPNMGNHHALVF--KAMVTPTRITLHGPEPEPMNRILRRFPNQTSYFIRVTFCDE 485
Query: 186 DLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAW 245
D + +PR ++ +I+ R L GI I R ++FL FS S LR SAW
Sbjct: 486 DGGDLF---FNPR------VSYDQIFDRYREVLNGGIPIAGRIYQFLGFSHSSLRSHSAW 536
Query: 246 MFA---------SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEI 296
A YG I + +G+F I AK AAR+GQ+FS + + + + I
Sbjct: 537 FSAPFVDDGGKLQLYG----NIIKALGDFEHIEIPAKCAARIGQAFSETPTFIKLAENRI 592
Query: 297 E--IIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVA 354
IPDVK + G + VFSDG+G +S + V + P+ QIR+GG KG+++
Sbjct: 593 RHSNIPDVKSQDGDIERVFSDGVGTISQDVLELVWPRLPRGSLIPTCLQIRWGGVKGMLS 652
Query: 355 ADPTSSKKLSL--RDSMRKYES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIF 410
D + R+SM K+ S ++ L++ A S+ LNRQ+I ++ LG+ +F
Sbjct: 653 LDSRLMGRTICVRRESMEKFPSNDVENLEICDAASRPLKLVLNRQMIKIMEDLGVDSNLF 712
Query: 411 EKKQREAVRQLDAILTDPLKAQEALELMSPGEN---TNILKELLICGYKPDAEPFLSMML 467
+ Q++ V +L A+ D L L G +++K L G + FL ++
Sbjct: 713 LQLQKKEVDRLRAVTADAYNTGTFLHLQGVGSTFFLPSLIKSLKNYGIDYRRDSFLRAVV 772
Query: 468 QTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFS 527
++ +L L+ K RI +P G ++ G +DET L G+V+V Y++ G+S + +
Sbjct: 773 ESTVLQELRLLKHKARIPVPEGATLFGIMDETGFLREGEVYVCYDT--YKR-PGKSPMKN 829
Query: 528 SSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRPHPN 584
S R G V+V ++P LHPGD++ + P H ++ +C+ F Q+G R P+
Sbjct: 830 SLRD-------GPVLVTRSPALHPGDIQYVNMRTPPPGHPLRNLRNCIAFSQRGHRDLPS 882
Query: 585 ECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDS 644
SG DLDGD+Y + WD P + DY L V+ +D+ +F +++ +D
Sbjct: 883 MLSGGDLDGDLYNIIWDKAAAPKRTFKAADYPRVTPEPLGRPVERKDMANWFVDFMKSDV 942
Query: 645 LGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEI-------------- 690
LG+IA H + +D++P + CL+LA S AVDF KTGV E
Sbjct: 943 LGLIATRHLILSDQDPVGTLGQDCLKLAGLHSTAVDFSKTGVAVEPRDIPKAPQFRPDFL 1002
Query: 691 ----PPHLYVKEYPDFMEK-------------PDKPTYESQNVIGKLFRAV-------KD 726
P LY + +F+ + P+ Y S+ ++G L+R V +D
Sbjct: 1003 APAPPAQLYDRTQINFLGRDEGVDDDDEDAAGPNHKYYRSEKILGVLYRNVDEKQIWDED 1062
Query: 727 IA-----PHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYG 781
I+ S F + R+ + + +E +++A + Y+ +G M Y
Sbjct: 1063 ISRVVSKTGPSVWAQFVGLMQRKIKEYSAGLIRWETRLEEAKSLRNVYEDTVGGFMTQYS 1122
Query: 782 IK-----TEAEILTGSIMKMSKSFTKRR 804
TE E+ GSI S S T+R+
Sbjct: 1123 DSHMKQLTEVEVFCGSIFNKSGSQTRRQ 1150
>gi|429963046|gb|ELA42590.1| hypothetical protein VICG_00342 [Vittaforma corneae ATCC 50505]
Length = 2092
Score = 275 bits (704), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 208/682 (30%), Positives = 324/682 (47%), Gaps = 104/682 (15%)
Query: 103 HLKECCYEPSRWLTDQYRKY---MTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPE 159
+L + C R L ++R + +K +I + V + +TP V F
Sbjct: 793 YLPKYCESLDRTLNTRFRPINFRVNIGTKDVKNSIVGNKNRVMIRIAILTPLSVIFNYET 852
Query: 160 INVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLR 219
+ SNRVL +F D D F ++ +E+ DL+ D R +
Sbjct: 853 TSESNRVLNNF--DPDKFCKVVIREENGKDRFMADLAKNTDGVYDYFR--------RVML 902
Query: 220 NGILIGDRKFEFLAFSSSQLRESSAWMFASRYG-----LTAAEIREWMGNFREIRNVAKY 274
NG +IG RK+ FLA ++SQL+ +W F + Y + A I+ W+GNF +I+N+ KY
Sbjct: 903 NGFVIGLRKYFFLAMTTSQLKIHGSW-FITPYEHDDMVIGADYIKSWIGNFHKIKNIGKY 961
Query: 275 AARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL 334
A R+G + SS+ T + D +E+ +I K Y F+DGIG ++ ++A +++ GL
Sbjct: 962 AIRIGLALSSTTPTYPFN-DFVEVD-----DIQKNSYCFTDGIGLITKKWAHNISNILGL 1015
Query: 335 KDNPPSAFQIRYGGYKGVVAADP-----------------------------------TS 359
PSAFQIR+GGYKGV+A P TS
Sbjct: 1016 -GFIPSAFQIRFGGYKGVIAVHPWMDEQKNFEEWLTVNSNIVRGYGKYSNINSLLYSNTS 1074
Query: 360 SKK-------------------LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLL 400
S L +R SM K++S L+++A SK +LNRQ+I +L
Sbjct: 1075 SNDAVNSFHQIVASFKQLGTPDLIVRKSMNKFDSSYRTLEIIAVSKSSSFYLNRQIILIL 1134
Query: 401 STLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAE 460
LG+ +IF Q + ++ + + L +Q+ + NT + + Y+
Sbjct: 1135 EGLGVPIQIFIDLQDKYIQNMLSKL-----SQDFTLFIKKYVNTTMNISTDLPFYRKLQS 1189
Query: 461 PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLH 520
P LS + + EL TK++I I GRS +G LDE L Q+F Q
Sbjct: 1190 PILSKVFE--------ELNTKSKILIGQGRSAIGVLDELGILEEDQIFCMF------QKD 1235
Query: 521 GESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 580
+ S+ + + +VAKNP +HPGD+RV+K V+ P LH++ + +VF +KG R
Sbjct: 1236 VDESMENLKDYGSYIVPNCYCIVAKNPVMHPGDIRVVKCVDAPKLHYLKNVIVFSKKGSR 1295
Query: 581 PHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYI 640
P N+CSGSDLDGDI+ V W LIP P +Y ++ D V + D+ ++ ++
Sbjct: 1296 PIFNQCSGSDLDGDIFLVSWCKALIPKATFKPYNYINTCALIKDK-VLLSDIVNFYIRHM 1354
Query: 641 VNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYP 700
LG IA+++ +D+ +E L+L++ F+ +D+ KTG IP L EYP
Sbjct: 1355 KFYQLGQIAHSYLAMSDK--FSIFNEKSLRLSDIFNKNIDYVKTGHITSIPEDLIPTEYP 1412
Query: 701 DFMEKPDKPTYESQNVIGKLFR 722
DFME+ P+Y S IG L+R
Sbjct: 1413 DFMERS--PSYYSTKAIGHLYR 1432
>gi|391864263|gb|EIT73559.1| RNA-directed RNA polymerase QDE-1 [Aspergillus oryzae 3.042]
Length = 1188
Score = 275 bits (703), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 234/841 (27%), Positives = 379/841 (45%), Gaps = 121/841 (14%)
Query: 51 ALPYEILFKINLLVQNG----CVAGPLLDSNFYRLVD---PYRAPVSISCIEHALDKLYH 103
++P+ ILF++ L QN + L + R D R P+++ + KL++
Sbjct: 292 SVPFGILFQLQALAQNAYLHPTTSRKLAEGLRKRFADDKAAGRDPITVD----GMRKLFN 347
Query: 104 LKECCY---EPSRWLTDQYRKYMTSRSKPSSPAISLDDGL-------VYVHRVQVTPSRV 153
+ + +P + D + + + + +GL VHRV VTP+R+
Sbjct: 348 MIGWPFPGDDPRVYEVDFLVATLEANHREIQDGFAYREGLHENTVNMTKVHRVNVTPTRI 407
Query: 154 YFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTR 213
GPE+ NR+LR F + F+R+ F DE+ + + ++ I+ R
Sbjct: 408 TLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGEDLLFN---------ANVDYKDIFGR 458
Query: 214 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTAAEIREWMGNFREI 268
+ GI I R + FL FS S LR + W F G T I +G F I
Sbjct: 459 FKDIMTRGIQIAGRTYNFLGFSHSSLRSRAVWFSSPFVDDNGHMQTYFSIVSAIGKFSHI 518
Query: 269 RNVAKYAARLGQSFSSS--KETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFAR 326
+ A+ AAR+GQ+F+ + L H + IPD+ G VFSDG+G +S E
Sbjct: 519 TSPARCAARIGQAFTETPFMVPLEKHGVLVSTIPDLTSPDGSR--VFSDGVGAISREVVA 576
Query: 327 KVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESE-LTKLDVLAW 384
+ + LK P+ FQIR GG KG++AAD + + +R SM K++SE + L++
Sbjct: 577 SIWADIPLKRGNPTCFQIRLGGAKGMLAADSRLRTAVIQIRPSMIKFDSEDMKNLEICNM 636
Query: 385 -SKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN 443
S+ P LNRQ+I +L +G + F + Q E + +L +I K L+ S E
Sbjct: 637 ASRPYPMVLNRQVIKILEDMGASKDWFFQMQNEELTRLQSITVSTDKTARFLKDKSVAEC 696
Query: 444 TNILKELLIC-----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 498
+ + C YK D FL +++ +L L+ K RI + G ++ G +DE
Sbjct: 697 IGLYRLYRQCYWTRLNYKKDG--FLRAIVEAVVLRELRLLKHKARIPVKKGMTLYGVIDE 754
Query: 499 TRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLK 558
T L G+V+V + ++ G + G ++V ++P LH GD++ +
Sbjct: 755 TGFLQEGEVYVT-----FDRMEGRYAAPPGP---------GHILVTRSPALHCGDIQRAQ 800
Query: 559 AVNVPALH---HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDY 615
V P H + +C+VF QKG R P++ SG DLDGD+Y V WD EL + P DY
Sbjct: 801 NVIPPEDHPLRYHRNCIVFSQKGSRDLPSKLSGGDLDGDLYHVIWDPELESVETFAPADY 860
Query: 616 TPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKF 675
S+ + DV+++D+ +F ++ +D LG+IA H V AD+ R C LA
Sbjct: 861 PRPTSIDIGRDVRVDDMAAFFVEFMRSDILGMIAIRHMVMADQAASGTRDTSCRLLAGLH 920
Query: 676 SIAVDFPKTGVPAEIPPHLYVKEY-PDFM------------------------------- 703
S AVDF KTG+P + V Y PDF+
Sbjct: 921 SKAVDFSKTGIPVNMEDMPRVNRYRPDFLAPGPQTRLYNKSKIGLEQHVSHANYDDDDDD 980
Query: 704 ---EKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGF----- 755
E+P + Y+S+ ++GKL+RA+ + + +F++ + + +D
Sbjct: 981 ADVEEPYR-YYKSEKILGKLYRAIDEQSIWRK--HVFSESETDEEFFWNSVIDDCLRRCK 1037
Query: 756 -------EDHIDDAIYHKGNYDYKLGNLMDYYGIK-----TEAEILTGSIMKMSKSFTKR 803
E+H+D+A + YD + + MD Y E E++ GSI+ T+R
Sbjct: 1038 SLPRTPREEHLDEAKRIRAAYDDAIISAMDTYSDHPTKPINELEVVIGSIINRRGVQTRR 1097
Query: 804 R 804
+
Sbjct: 1098 Q 1098
>gi|317158412|ref|XP_001826725.2| rna-dependent rna polymerase [Aspergillus oryzae RIB40]
Length = 1206
Score = 275 bits (702), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 235/841 (27%), Positives = 377/841 (44%), Gaps = 121/841 (14%)
Query: 51 ALPYEILFKINLLVQNGCV-------AGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYH 103
++P+ ILF++ L QN + L F R P+++ + KL++
Sbjct: 292 SVPFGILFQLQALAQNAYLHPTTSRKLAEGLRKRFAEDEAAGRDPITVD----GMRKLFN 347
Query: 104 LKECCY---EPSRWLTDQYRKYMTSRSKPSSPAISLDDGL-------VYVHRVQVTPSRV 153
+ + +P + D + + + + +GL VHRV VTP+R+
Sbjct: 348 MIGWPFPGDDPRVYEVDFLVATLEANHREIQDGFAYREGLHENTVNMTKVHRVNVTPTRI 407
Query: 154 YFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTR 213
GPE+ NR+LR F + F+R+ F DE+ + + ++ I+ R
Sbjct: 408 TLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGEDLLFN---------ANVDYKDIFGR 458
Query: 214 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTAAEIREWMGNFREI 268
+ + GI I R + FL FS S LR + W F G T I +G F I
Sbjct: 459 FIDIMTRGIQIAGRTYNFLGFSHSSLRSRAVWFSSPFVDDNGHMQTYFSIVSAIGKFSHI 518
Query: 269 RNVAKYAARLGQSFSSS--KETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFAR 326
+ A+ AAR+GQ+F+ + L H + IPD+ G VFSDG+G +S E
Sbjct: 519 TSPARCAARIGQAFTETPFMVPLEKHGVLVSTIPDLTSPDGSR--VFSDGVGAISREVVA 576
Query: 327 KVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESE-LTKLDVLAW 384
+ + LK P+ FQIR GG KG++AAD + + +R SM K++SE + L++
Sbjct: 577 SIWADIPLKRGNPTCFQIRLGGAKGMLAADSRLRTAVIQIRPSMIKFDSEDMKNLEICNM 636
Query: 385 -SKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN 443
S+ P LNRQ+I +L +G + F + Q E + +L +I K L+ S E
Sbjct: 637 ASRPYPMVLNRQVIKILEDMGASKDWFFQMQNEELTRLQSITVSTDKTARFLKDKSVAEC 696
Query: 444 TNILKELLIC-----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 498
+ + C YK D FL +++ +L L+ K RI + G ++ G +DE
Sbjct: 697 IGLYRLYRQCYWTRLNYKKDG--FLRAIVEAVVLRELRLLKHKARIPVKKGMTLYGVIDE 754
Query: 499 TRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLK 558
T L G+V+V + ++ G + G ++V ++P LH GD++ +
Sbjct: 755 TGFLQEGEVYVT-----FDRMEGRYAAPPGP---------GHILVTRSPALHCGDIQRAQ 800
Query: 559 AVNVPALH---HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDY 615
V P H + +C+VF QKG R P++ SG DLDGD+Y V WD EL + P DY
Sbjct: 801 NVIPPEDHPLRYHRNCIVFSQKGSRDLPSKLSGGDLDGDLYHVIWDPELESVETFAPADY 860
Query: 616 TPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKF 675
S+ + DV+++D+ +F ++ +D LG+IA H V AD+ R C LA
Sbjct: 861 PRPTSIDIGRDVRVDDMAAFFVEFMRSDILGMIAIRHMVMADQAASGTRDTSCRLLAGLH 920
Query: 676 SIAVDFPKTGVPAEIPPHLYVKEY-PDFM------------------------------- 703
S AVDF KTG+P + V Y PDF+
Sbjct: 921 SKAVDFSKTGIPVNMEDMPRVNRYRPDFLAPGPQTRLYNKSKIGLEQHVSHANYDDDDDD 980
Query: 704 ---EKPDKPTYESQNVIGKLFRAV-------KDIAPHTSCIRLF-----TKEVARRSYDP 748
E+P + Y+S+ ++GKL+RA+ K + + F + RR
Sbjct: 981 ADVEEPYR-YYKSEKILGKLYRAIDEQSIWRKHVLSESETDEEFFWNSVIDDCLRRC--K 1037
Query: 749 DMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIK-----TEAEILTGSIMKMSKSFTKR 803
+ E+H+D+A + YD + + MD Y +E E++ GSI+ T+R
Sbjct: 1038 SLPRTPKEEHLDEAKRIRAAYDDAIISAMDTYSDHPTKPISELEVVIGSIINRRGVQTRR 1097
Query: 804 R 804
+
Sbjct: 1098 Q 1098
>gi|83775472|dbj|BAE65592.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1188
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 235/841 (27%), Positives = 377/841 (44%), Gaps = 121/841 (14%)
Query: 51 ALPYEILFKINLLVQNGCV-------AGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYH 103
++P+ ILF++ L QN + L F R P+++ + KL++
Sbjct: 292 SVPFGILFQLQALAQNAYLHPTTSRKLAEGLRKRFAEDEAAGRDPITVD----GMRKLFN 347
Query: 104 LKECCY---EPSRWLTDQYRKYMTSRSKPSSPAISLDDGL-------VYVHRVQVTPSRV 153
+ + +P + D + + + + +GL VHRV VTP+R+
Sbjct: 348 MIGWPFPGDDPRVYEVDFLVATLEANHREIQDGFAYREGLHENTVNMTKVHRVNVTPTRI 407
Query: 154 YFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTR 213
GPE+ NR+LR F + F+R+ F DE+ + + ++ I+ R
Sbjct: 408 TLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGEDLLFN---------ANVDYKDIFGR 458
Query: 214 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTAAEIREWMGNFREI 268
+ + GI I R + FL FS S LR + W F G T I +G F I
Sbjct: 459 FIDIMTRGIQIAGRTYNFLGFSHSSLRSRAVWFSSPFVDDNGHMQTYFSIVSAIGKFSHI 518
Query: 269 RNVAKYAARLGQSFSSS--KETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFAR 326
+ A+ AAR+GQ+F+ + L H + IPD+ G VFSDG+G +S E
Sbjct: 519 TSPARCAARIGQAFTETPFMVPLEKHGVLVSTIPDLTSPDGSR--VFSDGVGAISREVVA 576
Query: 327 KVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESE-LTKLDVLAW 384
+ + LK P+ FQIR GG KG++AAD + + +R SM K++SE + L++
Sbjct: 577 SIWADIPLKRGNPTCFQIRLGGAKGMLAADSRLRTAVIQIRPSMIKFDSEDMKNLEICNM 636
Query: 385 -SKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN 443
S+ P LNRQ+I +L +G + F + Q E + +L +I K L+ S E
Sbjct: 637 ASRPYPMVLNRQVIKILEDMGASKDWFFQMQNEELTRLQSITVSTDKTARFLKDKSVAEC 696
Query: 444 TNILKELLIC-----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 498
+ + C YK D FL +++ +L L+ K RI + G ++ G +DE
Sbjct: 697 IGLYRLYRQCYWTRLNYKKDG--FLRAIVEAVVLRELRLLKHKARIPVKKGMTLYGVIDE 754
Query: 499 TRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLK 558
T L G+V+V + ++ G + G ++V ++P LH GD++ +
Sbjct: 755 TGFLQEGEVYVT-----FDRMEGRYAAPPGP---------GHILVTRSPALHCGDIQRAQ 800
Query: 559 AVNVPALH---HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDY 615
V P H + +C+VF QKG R P++ SG DLDGD+Y V WD EL + P DY
Sbjct: 801 NVIPPEDHPLRYHRNCIVFSQKGSRDLPSKLSGGDLDGDLYHVIWDPELESVETFAPADY 860
Query: 616 TPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKF 675
S+ + DV+++D+ +F ++ +D LG+IA H V AD+ R C LA
Sbjct: 861 PRPTSIDIGRDVRVDDMAAFFVEFMRSDILGMIAIRHMVMADQAASGTRDTSCRLLAGLH 920
Query: 676 SIAVDFPKTGVPAEIPPHLYVKEY-PDFM------------------------------- 703
S AVDF KTG+P + V Y PDF+
Sbjct: 921 SKAVDFSKTGIPVNMEDMPRVNRYRPDFLAPGPQTRLYNKSKIGLEQHVSHANYDDDDDD 980
Query: 704 ---EKPDKPTYESQNVIGKLFRAV-------KDIAPHTSCIRLF-----TKEVARRSYDP 748
E+P + Y+S+ ++GKL+RA+ K + + F + RR
Sbjct: 981 ADVEEPYR-YYKSEKILGKLYRAIDEQSIWRKHVLSESETDEEFFWNSVIDDCLRRC--K 1037
Query: 749 DMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIK-----TEAEILTGSIMKMSKSFTKR 803
+ E+H+D+A + YD + + MD Y +E E++ GSI+ T+R
Sbjct: 1038 SLPRTPKEEHLDEAKRIRAAYDDAIISAMDTYSDHPTKPISELEVVIGSIINRRGVQTRR 1097
Query: 804 R 804
+
Sbjct: 1098 Q 1098
>gi|239614149|gb|EEQ91136.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis ER-3]
Length = 1701
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 177/544 (32%), Positives = 289/544 (53%), Gaps = 66/544 (12%)
Query: 44 VGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH-ALDKLY 102
+G + I LP+ + +++ + + + + ++ F R + + +EH A++K
Sbjct: 802 LGEDEYIPLPFSVRYQLEVCMSHRYINEYTIEETFVRRLVQLGEKKAKELLEHVAMNKTI 861
Query: 103 HLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINV 162
+ Y+P + K T+ P Y+ VTPS + + P ++
Sbjct: 862 Y-----YDPMEIFNIPFPKGATNGRIPGH--------CCYIRSADVTPSTICYDIPSVDT 908
Query: 163 SNRVLRHFRRDIDNFLRISFIDED-LDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNG 221
SNRV R+ R D FLR+ F DE + KI+ + S ++Y R+L TL++G
Sbjct: 909 SNRVFRYHREHADRFLRVRFCDEKYIGKIYPNN------SGNSQCMEKVYARVLRTLQHG 962
Query: 222 ILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQS 281
I IGDR++EFLAF +SQLRE A+ FAS LTAA IR MG+ IR VAKYAARLGQ
Sbjct: 963 ITIGDRRYEFLAFGNSQLREHGAYFFASLPHLTAANIRAQMGDLNNIRVVAKYAARLGQC 1022
Query: 282 FSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD---NP 338
FS+++ S + +I+ I D++ + YVFSDG+G++S + + S G+K P
Sbjct: 1023 FSTTRAVTSCPV-QIKKIDDIE----RNGYVFSDGVGRLSHFLTQMIQSDLGIKTPSGEP 1077
Query: 339 PSAFQIRYGGYKGVVAADPTS-SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLI 397
PS FQ R GG KG++A P + +++ +R S K+ + L+++ +S + LNRQLI
Sbjct: 1078 PSVFQFRLGGCKGILAVSPEARQREVHIRRSQFKFPASHNGLEIIRYSHFSYATLNRQLI 1137
Query: 398 SLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYK 456
+LS LG DE+F K + L+ +TD KA L+ + P + T +L +++ G++
Sbjct: 1138 LILSALGTPDEVFIAKLSMMLANLEQAMTDEDKAVSLLQKYVDPNQMTLVLADMIRDGFQ 1197
Query: 457 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN------------- 503
EPF+S +L+ +R ++ L+ K +I I G ++GC+DET+TL
Sbjct: 1198 GSREPFVSSLLELWRTWQIKYLKEKAKIAIDEGAFLLGCIDETKTLKGYFRSARPKANST 1257
Query: 504 -------YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRV 556
++FVQ+ +R G+ + +++GL ++A+NP LHPGD+RV
Sbjct: 1258 YQERVDCLPEIFVQV----WRHSEGKYA-----------VIEGLCILARNPSLHPGDIRV 1302
Query: 557 LKAV 560
+KA+
Sbjct: 1303 VKAI 1306
>gi|85110327|ref|XP_963405.1| hypothetical protein NCU08435 [Neurospora crassa OR74A]
gi|28881256|emb|CAD70515.1| related to RNA-directed RNA polymerase [Neurospora crassa]
gi|28925084|gb|EAA34169.1| predicted protein [Neurospora crassa OR74A]
Length = 1351
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 199/645 (30%), Positives = 320/645 (49%), Gaps = 75/645 (11%)
Query: 139 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPR 198
GL ++R VTP+R+ GPE+ NR+LR F D+FLR+ F +ED DL
Sbjct: 410 GLTKIYRALVTPTRIELHGPELEAKNRILRKFPEHQDHFLRVQFAEED-----GQDLFFN 464
Query: 199 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA-----SRYGL 253
+ + D IY R L NGI +G R + FL FS S LR S W+ A + L
Sbjct: 465 SAVSMDA----IYQRFKDVLTNGISVGGRVYRFLGFSHSSLRAHSLWLAAPFIYDGKLQL 520
Query: 254 TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 313
A+ I E +G+FR I + A+ AAR+GQ+FS + ++S++ I++I + ++ + + VF
Sbjct: 521 -ASNIIEDLGDFRNIMSPARRAARIGQAFSETPYSVSLYDHGIDVI--RQRDVKRNERVF 577
Query: 314 SDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKY 372
SDG+G +S + + P+ Q+R+ G KG++A D + +++ +RDSM K+
Sbjct: 578 SDGVGIISQGALEVIHREIPESKGYPNCLQVRWAGAKGMLALDARLTGRQICIRDSMEKF 637
Query: 373 ----ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 428
E L D+ SK P LNRQ+I +L + + F + Q + +++L AI +
Sbjct: 638 RSRDEEHLEICDMA--SKPIPLMLNRQMIKILEDMRAPAQWFLELQEKELQRLRAITDNV 695
Query: 429 LKAQEALELMSPGENTNI---LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 485
L+L G++ ++ LK+L + FL +++ +L L+ K RI
Sbjct: 696 QNVATFLKLQCVGDSVHLSQFLKDLDKMNIDYRRDQFLRGIVEAVVLRELRLLKHKARIP 755
Query: 486 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 545
+P G ++ G +DET L G+V+V R F + G VVV +
Sbjct: 756 VPYGVTLFGVMDETGLLREGEVYVTFETVDGR--------FKDPPT------AGPVVVTR 801
Query: 546 NPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDD 602
+P LHPGD+++ PA H + +C+VF Q G R P++ SG DLDGD + V WD
Sbjct: 802 SPALHPGDIQIAHNAIPPAGHPLRELKNCIVFSQNGERDLPSQLSGGDLDGDTFNVIWDQ 861
Query: 603 ELIPPQQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPR 661
++ + DY + ++L+ +V+ +D+ ++F ++ D LG+IA H + AD
Sbjct: 862 SIVATLRTFAAADYPRVEPLKLNREVESKDMADFFVEFMKADHLGVIAVRHMILADERNE 921
Query: 662 KARSEPCLQLAEKFSIAVDFPKTGVPAEIP----PHLYVKEY----PDF---------ME 704
CL+LA S AVDF K+G+ +I P +Y ++ PD ME
Sbjct: 922 GTLDADCLKLAALHSKAVDFSKSGIHVDITELPRPPMYRPDFLVNGPDIKIHDKSTIDME 981
Query: 705 K-------------PDKPTYESQNVIGKLFRAVKDIAPHTSCIRL 736
+ P Y+S ++G+LFRAV + T I+L
Sbjct: 982 EQYLRQDDDDGDDTPRYKYYKSDKILGRLFRAVDEKKIWTKNIKL 1026
>gi|449304105|gb|EMD00113.1| hypothetical protein BAUCODRAFT_119665 [Baudoinia compniacensis UAMH
10762]
Length = 1187
Score = 272 bits (696), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 204/728 (28%), Positives = 341/728 (46%), Gaps = 88/728 (12%)
Query: 53 PYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLY---------- 102
P+ + ++++ L +NGC++ P V I AL Y
Sbjct: 321 PFSVRYQLDRLARNGCIS-PSKLLLLLPAVAEVIDQCGIDATVGALRCFYRQVPRPGPEV 379
Query: 103 HLKECCYEPSRWL----TDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGP 158
+EC R L D Y +Y + A + +H+V +TP+ Y GP
Sbjct: 380 EARECSIRAMRTLIRKYADAYDQYEPGNLYELAKAYM---HINLIHKVVITPAGTYLEGP 436
Query: 159 EINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIY-TRILST 217
+NRVLR + D F+R+ F DED +H PR S IY R
Sbjct: 437 SAEPTNRVLRKYATQTDCFIRVVFQDEDGSSMHH---DPRASQEA------IYHIRYKGV 487
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESSAWMFA------SRYGLTAAEIREWMGNFREIRNV 271
L I I + F FL FS S LR S W A +R + + ++ + +G+F IR
Sbjct: 488 LDGTINIAGQGFSFLGFSHSSLRNRSCWFMAPLIDSRTRTLVLSPQVIKELGDFTHIRTP 547
Query: 272 AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASK 331
AK AAR+GQ F+ + ++SV E+ +P V+ + FSDG+G +S + V
Sbjct: 548 AKCAARIGQCFTDTTASVSVKDWEVGKLPVVE----RNGRDFSDGVGTLSRQLFEDVWQV 603
Query: 332 CGLKDN-PPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELTKLDVLAWSKYQP 389
G+++ P+ QIR+ G KG+V+ D ++L LR +M K+ +++ + + ++P
Sbjct: 604 YGMRNALKPTVLQIRFQGAKGMVSLDSRLQGRQLLLRTNMEKFVGSQSRVLEICGAGFRP 663
Query: 390 C--FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ---EALELMSPGENT 444
LNRQ + +L LG E Q V++L +L + E +EL +
Sbjct: 664 LPMVLNRQSVQILEDLGTPTEAVLSLQTREVQKLQCMLESAVNTASLLETMELTKAAKLP 723
Query: 445 NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNY 504
+++ L + FL+ + Q +L +++ + RI I +G ++ G +DET L
Sbjct: 724 DLIDMLDQARLDFRHDRFLTGIAQMAVVHQLRDIKYRGRIHINDGVTLYGIMDETGYLQE 783
Query: 505 GQVFVQISGA---GYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 561
G+V+V A G ++L ++ +++ ++P +HPGD++ + AV+
Sbjct: 784 GEVYVVTEKAPDGGRKEL-----------------IRNNILITRSPAMHPGDIQQVNAVS 826
Query: 562 VPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPA 618
VPA L H+ + VVF Q G R P++ SG DLDGD+Y + WD L P + P DY
Sbjct: 827 VPADSPLKHLSNVVVFSQHGARDLPSQLSGGDLDGDLYNIIWDSTLWPTKFATPADYPRV 886
Query: 619 QSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIA 678
+ ++LD V +D+ ++F ++ + LG+I + H AD+ P C++LA S A
Sbjct: 887 KPVELDRIVTGKDMSDFFVTFMETNQLGMICSIHMQLADQRPMGTWDPDCIKLAAMASTA 946
Query: 679 VDFPKTGVPAEI----------------PPHLYVKE--YPDFMEKPDKP--TYESQNVIG 718
VD+ KTG+P ++ P + + E Y D ++ +P Y+SQ +G
Sbjct: 947 VDYSKTGIPVDMKQCPKYDRCRPDFMAPSPRILLSEQGYLDLEDELSRPYRYYKSQKALG 1006
Query: 719 KLFRAVKD 726
+L+RA+ +
Sbjct: 1007 QLYRAIDE 1014
>gi|67524519|ref|XP_660321.1| hypothetical protein AN2717.2 [Aspergillus nidulans FGSC A4]
gi|40743829|gb|EAA63015.1| hypothetical protein AN2717.2 [Aspergillus nidulans FGSC A4]
gi|259486372|tpe|CBF84157.1| TPA: RNA-directed RNA polymerase (Sad-1), putative (AFU_orthologue;
AFUA_3G06790) [Aspergillus nidulans FGSC A4]
Length = 1203
Score = 271 bits (694), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 210/737 (28%), Positives = 344/737 (46%), Gaps = 90/737 (12%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVD-------PYRAPVSISCIEHALDKLYH 103
LP+ ILF++ LV NG + ++ +L R P+S++ ++ + L
Sbjct: 285 TLPFGILFQLQALVYNGYLPPNIVLRLTRKLASITKTRKVQGRRPISVNSMKRLFN-LID 343
Query: 104 LKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGL-------VYVHRVQVTPSRVYFC 156
+P + + + +T K S + L ++HRV VTPSR+
Sbjct: 344 WPSPFGDPEEFSIKRLLEVITGNDKDLGEGASEAEALFQPAPHLAHIHRVVVTPSRITLH 403
Query: 157 GPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILS 216
GPE NR+LR F + F+R+ F DE+ + I+ +PR I + I+ R +
Sbjct: 404 GPETEPLNRILRRFPNHHEYFIRVQFCDENGEDIY---FNPR------INNSLIFARFKN 454
Query: 217 TLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAA-----EIREWMGNFREIRNV 271
NG I R + FL FS S LR SAW A + I + +G F EI +
Sbjct: 455 VFANGFQIAGRTYTFLGFSHSSLRSRSAWFSAPFIDDDGSLQSYFTIIKAIGRFSEITSP 514
Query: 272 AKYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIEIGKTKYVFSDGIGKVSAEFARKVA 329
A+ AAR+GQ+FS + +++ + I + IPDV++ VFSDG+G +SA+ +
Sbjct: 515 ARCAARIGQAFSETPFAVNLKENGIRVLRIPDVQV----GGRVFSDGVGTISAKAVDIIH 570
Query: 330 SKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESE-LTKLDVL-AWSK 386
++ P+ FQIR GG KG+++ DP K+ +R SM K++++ +++ + SK
Sbjct: 571 GVLPPRNGAPTCFQIRLGGAKGMLSLDPRLRGSKICIRPSMTKFQTDDQVNVEICGSGSK 630
Query: 387 YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI 446
P FLNRQ+I +L +G+ E F Q + QL ++ S + +
Sbjct: 631 PIPLFLNRQVIKILEDMGVDREWFMTLQELRIEQLRKATATTKNTATFVKGQSVADCVKL 690
Query: 447 LKE-LLICGYKPDAE--PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN 503
+ LL K D + PFL +++ +L L+ K RI + G ++ G +DET LN
Sbjct: 691 YRLFLLFHNLKLDYKKIPFLRAVVEAMVLRELRLLKHKARIPVHKGITLYGVMDETGFLN 750
Query: 504 YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP 563
+VFV Y+ + ++ + R ++V ++P LH GD++ V P
Sbjct: 751 ENEVFVT-----YQAMDRLAAPPQNCR----------LLVTRSPALHNGDIQYPYNVVPP 795
Query: 564 ALHHMV---DCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQS 620
H + +C+VF QKG R P++ SG DLDGD+Y + WD P + P +Y
Sbjct: 796 KGHPLQQQRNCIVFSQKGTRDLPSQLSGGDLDGDLYNIIWDPAAAPKRVFTPANYPRNPP 855
Query: 621 MQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVD 680
+ + V+ ED+ +F ++ +D LG+IA H + AD+ C +LA+ S AVD
Sbjct: 856 LDIKRVVEREDMANFFVEFMQSDRLGVIATKHMILADQMELGTSHSDCKKLAQLHSTAVD 915
Query: 681 FPKTGVPAEIPPHLYV-KEYPDFME------------------------------KPDKP 709
F KTG+P + +V + PDF+ P
Sbjct: 916 FSKTGIPVRLKEMPFVNRSRPDFLAPGPLAKIHDRQNIQLEARYVHPYPDDDIDFSPVHK 975
Query: 710 TYESQNVIGKLFRAVKD 726
Y S+ ++GKL+RA+ +
Sbjct: 976 YYRSEKILGKLYRAINE 992
>gi|74830367|emb|CAI39056.1| RNA-dependent RNA polymerase [Paramecium tetraurelia]
Length = 1367
Score = 271 bits (694), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 190/632 (30%), Positives = 312/632 (49%), Gaps = 75/632 (11%)
Query: 140 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 199
LVY RV +TPS + + + V++ +LR ++ FLR+ + DE+ D + +
Sbjct: 521 LVYTRRVSMTPSGILYFNKQPEVTSGILRQHYNIVEYFLRVHYEDENQDMVLNIPY---- 576
Query: 200 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA-SRYGLTAAEI 258
IT+T Y + TL+ I + FE +SSS LR + W + G +I
Sbjct: 577 -----ITQTYYYNFMFPTLK----ILGQHFELFTWSSSSLRAGTCWFIDFNGAGKQRTDI 627
Query: 259 REWMGNFREIR--NVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDG 316
+ +GNF ++ +AK AARLGQ+ S+S V I I D+ + K +++DG
Sbjct: 628 IKSIGNFTNLKYDEIAKNAARLGQNLSTSISVDCVGGINILIKDDL---VDKNNKLYTDG 684
Query: 317 IGKVSAEFARKVASKCGLKDNPP-SAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYES 374
IGK+S + ++ K + SA QIRY G KG++ D + K + LR SM KY
Sbjct: 685 IGKISQDLIDQIRQKMRVNSKIKISAIQIRYEGAKGLLVLDESLEQKTIVLRRSMIKYNP 744
Query: 375 EL---TKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL------DAIL 425
K+ +L ++K++ +LNRQ+I LL TL + ++ F++ Q E ++++ DA +
Sbjct: 745 AKGYPNKIQILDFNKFRGGYLNRQIIILLLTLQVNEKAFQELQDEYLKKIEDLQMKDASI 804
Query: 426 TDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 485
E + + L+ + G + + +L + LL+LR KT I
Sbjct: 805 YKYFSVDYCDEQIDLPNIMDALRAYINIGMEDNI--LCQGVLSKLKQRGLLQLRKKTSIL 862
Query: 486 IPNGRSMMGCLDETRTLNYGQVFVQISGAGY-RQLHGESSLFSSSRSRQRFIVQGLVVVA 544
+ ++G +DE L +++ + Q+ E+ +QG V+V
Sbjct: 863 VEKAARVLGVIDEHNLLQPNEIYCLVQDENNDTQVEPEN-------------IQGEVLVT 909
Query: 545 KNPCLHPGDVRVLKAVNVPAL----------HHMVDCVVFPQKGMRPHPNECSGSDLDGD 594
+NPCLHPGD++ L A++ + +++C+VFP G P + +G DLDGD
Sbjct: 910 RNPCLHPGDIKKLNAISTQEILKRNGSKNPYSQLINCLVFPACG-NSLPCQIAGGDLDGD 968
Query: 595 IYFVCWDDELIPPQQDPPMDYTPAQSMQL------------------DHDVQIEDVEEYF 636
+YF+CWD+ L+PP Q M Y + Q+ D + +++ ++
Sbjct: 969 LYFICWDNRLLPPVQAKSMVYDNKKPNQVQYKKIDFRENNQRFHENVDKNFDTKNMFDFL 1028
Query: 637 TNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYV 696
Y+ +++LG+I N+H +AD+ +KA CL+LAE S AVDF KTG + L
Sbjct: 1029 YFYLNSETLGLIDNSHLAWADKSDKKANDPNCLELAELHSDAVDFVKTGKQVFLDVKLLS 1088
Query: 697 KEYPDFMEKPDKPTYESQNVIGKLFRAVKDIA 728
K +PD+MEK TYESQ +IGKL+R V +
Sbjct: 1089 KIFPDYMEKEQSVTYESQTIIGKLYRQVAQMG 1120
>gi|145498970|ref|XP_001435471.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402604|emb|CAK68074.1| unnamed protein product [Paramecium tetraurelia]
Length = 1343
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 190/632 (30%), Positives = 312/632 (49%), Gaps = 75/632 (11%)
Query: 140 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 199
LVY RV +TPS + + + V++ +LR ++ FLR+ + DE+ D + +
Sbjct: 497 LVYTRRVSMTPSGILYFNKQPEVTSGILRQHYNIVEYFLRVHYEDENQDMVLNIPY---- 552
Query: 200 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA-SRYGLTAAEI 258
IT+T Y + TL+ I + FE +SSS LR + W + G +I
Sbjct: 553 -----ITQTYYYNFMFPTLK----ILGQHFELFTWSSSSLRAGTCWFIDFNGAGKQRTDI 603
Query: 259 REWMGNFREIR--NVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDG 316
+ +GNF ++ +AK AARLGQ+ S+S V I I D+ + K +++DG
Sbjct: 604 IKSIGNFTNLKYDEIAKNAARLGQNLSTSISVDCVGGINILIKDDL---VDKNNKLYTDG 660
Query: 317 IGKVSAEFARKVASKCGLKDNPP-SAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYES 374
IGK+S + ++ K + SA QIRY G KG++ D + K + LR SM KY
Sbjct: 661 IGKISQDLIDQIRQKMRVNSKIKISAIQIRYEGAKGLLVLDESLEQKTIVLRRSMIKYNP 720
Query: 375 EL---TKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL------DAIL 425
K+ +L ++K++ +LNRQ+I LL TL + ++ F++ Q E ++++ DA +
Sbjct: 721 AKGYPNKIQILDFNKFRGGYLNRQIIILLLTLQVNEKAFQELQDEYLKKIEDLQMKDASI 780
Query: 426 TDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 485
E + + L+ + G + + +L + LL+LR KT I
Sbjct: 781 YKYFSVDYCDEQIDLPNIMDALRAYINIGMEDNI--LCQGVLSKLKQRGLLQLRKKTSIL 838
Query: 486 IPNGRSMMGCLDETRTLNYGQVFVQISGAGY-RQLHGESSLFSSSRSRQRFIVQGLVVVA 544
+ ++G +DE L +++ + Q+ E+ +QG V+V
Sbjct: 839 VEKAARVLGVIDEHNLLQPNEIYCLVQDENNDTQVEPEN-------------IQGEVLVT 885
Query: 545 KNPCLHPGDVRVLKAVNVPAL----------HHMVDCVVFPQKGMRPHPNECSGSDLDGD 594
+NPCLHPGD++ L A++ + +++C+VFP G P + +G DLDGD
Sbjct: 886 RNPCLHPGDIKKLNAISTQEILKRNGSKNPYSQLINCLVFPACG-NSLPCQIAGGDLDGD 944
Query: 595 IYFVCWDDELIPPQQDPPMDYTPAQSMQL------------------DHDVQIEDVEEYF 636
+YF+CWD+ L+PP Q M Y + Q+ D + +++ ++
Sbjct: 945 LYFICWDNRLLPPVQAKSMVYDNKKPNQVQYKKIDFRENNQRFHENVDKNFDTKNMFDFL 1004
Query: 637 TNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYV 696
Y+ +++LG+I N+H +AD+ +KA CL+LAE S AVDF KTG + L
Sbjct: 1005 YFYLNSETLGLIDNSHLAWADKSDKKANDPNCLELAELHSDAVDFVKTGKQVFLDVKLLS 1064
Query: 697 KEYPDFMEKPDKPTYESQNVIGKLFRAVKDIA 728
K +PD+MEK TYESQ +IGKL+R V +
Sbjct: 1065 KIFPDYMEKEQSVTYESQTIIGKLYRQVAQMG 1096
>gi|453081039|gb|EMF09089.1| RdRP-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 1253
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 197/637 (30%), Positives = 317/637 (49%), Gaps = 83/637 (13%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIH---STDLSPRG 199
+HRV VTP+ + GPE +NRVLR ++ DNF+R+ F DED ++ S+D
Sbjct: 438 IHRVVVTPTGIRLEGPEPEPTNRVLRLHAQNTDNFVRMVFQDEDGGRVKFDWSSDYQ--- 494
Query: 200 SSATDITRTRIY-TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS--RYG--LT 254
RIY R L GI I + F FL FS S LR S W A + G +
Sbjct: 495 ---------RIYHERFQGILDKGITIAGKSFTFLGFSHSSLRSQSCWFMAPFVKAGSLMF 545
Query: 255 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFS 314
A ++ + +GNF IR AK AAR+GQ+F+ + ++ + D++ + E+ + + F+
Sbjct: 546 AEKVIKELGNFSGIRTPAKCAARIGQNFTDTNTSVRLQRDQVFEL----AEVVRNGHDFA 601
Query: 315 DGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKY 372
DG G +S +V G K P+A QIR+ G KG+VA D K+L LR++MRKY
Sbjct: 602 DGAGTISKGLLEEVWKVYGTKRMLKPTALQIRFQGAKGMVAQDTRLPGKRLMLRNNMRKY 661
Query: 373 ES---ELTKLDVLAWS-KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 428
+ + L++ + + P LNR I +L L + ++ F Q +A+ +L +
Sbjct: 662 LTGADDHMDLEICGAAFRPLPMILNRGFIKILEDLAVPEQSFINLQNKAMERLRMMTQSA 721
Query: 429 LKAQEALELMSPGENT---NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 485
+ L+ + + + ++++ L G + FL ++ S+L +++ + RI
Sbjct: 722 INTGTLLDEVHTSKASGLPSLIRYLGQIGLDYHHDDFLYAAVELAVISELRDIKHRGRIP 781
Query: 486 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 545
+P G ++ G DET L G++FV I+ G + +V+ V++ +
Sbjct: 782 VPKGVTLFGVPDETGYLKEGEIFV-ITERG-------------PTGGKEILVRDKVIITR 827
Query: 546 NPCLHPGDVRVLKAVNVP---ALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDD 602
+P LHPGD+++ KAV+VP + + + VVF + G R P++ SG DLDGD+Y V WD+
Sbjct: 828 SPALHPGDIQLAKAVDVPPGNSNRQLSNVVVFSKWGQRDLPSKLSGGDLDGDLYNVIWDE 887
Query: 603 ELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRK 662
LIP P Y ++L DV +D+ ++F ++ ND LG+IAN H AD+ P
Sbjct: 888 TLIPWMIYAPAQYPRVPPVELPRDVTRKDMSDFFVTFMENDKLGLIANQHLQLADQRPMG 947
Query: 663 ARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEY-PDFME----------------- 704
C++LA S AVD+ KTG+PA + ++ PD+M
Sbjct: 948 TLDPDCIKLAALASTAVDYSKTGIPANMGTAPRPAKFKPDYMAPNPRVVFSQEGLLDLED 1007
Query: 705 ---KPD----------KPT--YESQNVIGKLFRAVKD 726
PD +P YESQ V+G L+R++ +
Sbjct: 1008 EDFAPDEAFDTIDAERRPMRYYESQKVLGILYRSIDE 1044
>gi|429964430|gb|ELA46428.1| hypothetical protein VCUG_02106 [Vavraia culicis 'floridensis']
Length = 2289
Score = 271 bits (692), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 214/677 (31%), Positives = 312/677 (46%), Gaps = 150/677 (22%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
+ V V P + P+ N+SNR+LR+F N +RI+F D
Sbjct: 743 IRTVHVHPLAIVCMYPKNNLSNRILRNF----SNMIRITFKD------------------ 780
Query: 203 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG-----LTAAE 257
T T Y R + NGI I DR + F+A SSSQLR +SAW F S Y + +
Sbjct: 781 TKDESTMEYIR--EIMSNGITI-DRPYYFVATSSSQLRANSAW-FISPYRKNNVLIGSDY 836
Query: 258 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSV--HMDEIEIIP---DVKIEIGKT--- 309
+R WMG N+ KY R+G SS+ + +++E +I+ + G +
Sbjct: 837 VRNWMGVI-NCDNIGKYMIRVGLGLSSTFNMFEIVDYVEEDDIVSYGNSGSVSYGNSGSV 895
Query: 310 --------------------------------------KYVFSDGIGKVSAEFARKVASK 331
+YV++DGIG++S A VA K
Sbjct: 896 STSNSGSVSTSSNKNNNSSTSNSSTINTTNAITNNVNDEYVWTDGIGRISNRVADMVAKK 955
Query: 332 CGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCF 391
L + P+AFQIR+ GYKGV+ L LR SMRK++S L+V+++S+ C+
Sbjct: 956 LKLT-STPTAFQIRFAGYKGVLVR-ANIPHDLMLRKSMRKFKSTYNVLEVVSYSQSIECY 1013
Query: 392 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL 451
LNRQ+I +L LG+ F Q E + + + L I K
Sbjct: 1014 LNRQIIMILEGLGVPKHNFICLQNEYLMHMYRAINHSL----------------IGKYCR 1057
Query: 452 ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI 511
I G +++ + FR E+ K RIF+ NG +MG +DE L +VF++I
Sbjct: 1058 ISGVALVDRMSGALLGRLFR-----EMCAKGRIFVKNGIVLMGVIDEEGVLGENEVFLRI 1112
Query: 512 -------SGAGYRQLHGESSLFSSSRSRQRF----------------------------- 535
SG +++ R ++ F
Sbjct: 1113 YEDDGDVSGGRSKRMRSNEIGAEEMRKKELFERALSVVDRSGVGTADSSADDINTSTGGG 1172
Query: 536 ------IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGS 589
+V G +VAKNPCLHPGD+R ++ V L H + +VF +KG RP N CSGS
Sbjct: 1173 VLRDDGVVVGGAIVAKNPCLHPGDIRKVQCVYKKELMHYKNVLVFSKKGRRPVFNMCSGS 1232
Query: 590 DLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIA 649
DLDGD+YFV WD LIPP + P +Y + + +H V +D+ +FT + D LG I+
Sbjct: 1233 DLDGDLYFVSWDARLIPPIEHFPQNYQSSSYLSKEHIVA-QDMVNFFTRFAKEDELGKIS 1291
Query: 650 NAHTVFADREPRKARSEP-CLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDK 708
NAH V++D ++P L+LA FS+ VDFPKTG A +P +L EYPDFME+
Sbjct: 1292 NAHLVYSDVH---GITDPQALKLAYLFSMGVDFPKTGYIARLPQNLEPYEYPDFMER--M 1346
Query: 709 PTYESQNVIGKLFRAVK 725
+YES V+G ++R V+
Sbjct: 1347 RSYESVRVMGMMYRRVQ 1363
>gi|121716158|ref|XP_001275688.1| rna-dependent rna polymerase [Aspergillus clavatus NRRL 1]
gi|119403845|gb|EAW14262.1| rna-dependent rna polymerase [Aspergillus clavatus NRRL 1]
Length = 1203
Score = 270 bits (690), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 185/631 (29%), Positives = 305/631 (48%), Gaps = 80/631 (12%)
Query: 140 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 199
L +H+V +TPSR+ GPE NR+LR F D F+R+ F DE +H +
Sbjct: 421 LALIHKVMITPSRITLHGPEPEPFNRILRRFPNHHDYFIRVQFCDEQGGDLHFS------ 474
Query: 200 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 259
+ +T +++R + L NGI I R + FL +S S LR S W +A I
Sbjct: 475 ---SRVTYDEVFSRFKNVLTNGIQIAGRTYYFLGWSHSSLRSHSVWA-------SAVCII 524
Query: 260 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIEIGKTKYVFSDGI 317
+ +G+F +I + A+ AAR+GQ+FS + + V + I I +PD+ + G+ FSDG+
Sbjct: 525 KALGDFSKITSPARCAARIGQAFSETPFAIPVEDNTITIEEVPDLASKDGQR--FFSDGV 582
Query: 318 GKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESEL 376
G +S + S K P+ FQIR GG KG++A D + + +R SM K++ E+
Sbjct: 583 GSLSLNVLEMIWSNIPPKKGKPTGFQIRLGGAKGMIAIDSRLTGSVIRIRPSMIKFQGEM 642
Query: 377 TKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL 435
L++ SK P LNRQ+I +L +G+ ++ F + Q + + L +I +
Sbjct: 643 RDLEICDMASKPIPLVLNRQMIKILEDMGVAEDWFFRLQNQELTYLRSITASAQNTAVFI 702
Query: 436 ELMSPGENTNILKELLIC-----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 490
+ + G+ + + C YK PFL +++ +L L+ K RI + G
Sbjct: 703 KRQAVGDCIGLFRLFRQCHQWKINYK---VPFLRSLVEAVILRELRLLKHKARIPVDKGI 759
Query: 491 SMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLH 550
++ G +DET L +V+V + R + ++ G V+V ++P L+
Sbjct: 760 TLFGIIDETEYLQENEVYVTFNTIQGRPVAPPTA--------------GPVLVTRSPALY 805
Query: 551 PGDVRVLKAVNVPALHHMV---DCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 607
GD+++ P H + +C+VF KG R P++ SG DLDGDIY + WD E P
Sbjct: 806 DGDIQICLNTVPPEDHPLRRHRNCIVFSAKGDRDLPSQLSGGDLDGDIYNIIWDPEARPK 865
Query: 608 QQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEP 667
+ P DY + + + V++ D+ ++F +++ D LG+IA H + AD+
Sbjct: 866 RTFAPADYPRVEPVNIGRLVEVHDMADFFIDFMKTDHLGVIAIRHMIMADQLDEGTSHPD 925
Query: 668 CLQLAEKFSIAVDFPKTGVPAEIPPHLYVKE--YPDFM---------------------- 703
C +LA+ S AVDF KTG+P ++ HL PDF+
Sbjct: 926 CRKLAQLHSTAVDFSKTGIPVQM-EHLPRGNNFRPDFLAPGPQAYMYNKSAIHMDQYIAR 984
Query: 704 --------EKPDKPTYESQNVIGKLFRAVKD 726
+P + Y S+ ++GKL+RA+ +
Sbjct: 985 TEYDEDDDTEPPRKYYRSEKILGKLYRAIDE 1015
>gi|308458494|ref|XP_003091586.1| hypothetical protein CRE_24272 [Caenorhabditis remanei]
gi|308255699|gb|EFO99651.1| hypothetical protein CRE_24272 [Caenorhabditis remanei]
Length = 1634
Score = 270 bits (689), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 246/864 (28%), Positives = 396/864 (45%), Gaps = 154/864 (17%)
Query: 139 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPR 198
G V +V +TP+R + PE ++NR +R D +R + D++L K+ L
Sbjct: 443 GYRKVRKVILTPTRKIYLAPEKIMANRAIRGACHDGTRIIRATLRDDNLQKMRFNLL--- 499
Query: 199 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTA-AE 257
G+ +IT L LR+G I +R F +LA S+SQ+RE A+ F RY AE
Sbjct: 500 GNLQGEIT--------LGHLRDGFGIMERAFGYLASSNSQMREGGAY-FMERYDAEQLAE 550
Query: 258 IRE------------------W--MGNFREIRNVAKYAARLGQSFSSSK--ETLSVHMDE 295
+E W +G F + ++ K ARLGQ F+ ++ + +S+ +
Sbjct: 551 YKEEHPGEPVPHSFKPMIKEYWNVLGKFVDTGSIPKALARLGQCFTQARPIDNVSISPTD 610
Query: 296 IEIIPDV---KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV 352
++IPD K GK Y+++DG+G +SA A ++ G+K + P AFQ R+ G+KG+
Sbjct: 611 YKMIPDAIGGKNTEGKP-YMYTDGVGCISAGLAEQIFGSLGIK-HVPCAFQFRFRGFKGM 668
Query: 353 VAADPTSSK---------------KLSLRDSMRKYES--ELTKLDVLAWSKYQPCFLNRQ 395
+A DP K R S K+ES E +++++ WS P LN+
Sbjct: 669 LAIDPNIDHTANHWESLGLRYHRIKCLFRKSQLKFESCQEDEQMEMVKWSSPTPVTLNKP 728
Query: 396 LISLLSTL-GIWDEIFEKKQREAVRQL--------DAILTDPLKAQEALELM------SP 440
I++L + G+ K+ V +L A + + K +E LE M +
Sbjct: 729 FINILDQVSGLQSLECHKRVSGRVEELLSMEMDNYSAAVVNEEKCREVLEGMPRRIHFAS 788
Query: 441 GENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDE 498
E N G+ EPF +++ S + L K +I IP GRSM G DE
Sbjct: 789 MERKN--------GFVLSTEPFFRSLVKATIDSAMSRLLRKLQIPIPGNLGRSMFGITDE 840
Query: 499 TRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLK 558
T L YGQVFV+ + + H SR ++ + G V+V K P L GDVR+ +
Sbjct: 841 TGQLQYGQVFVRYT-ENVNEKH-------PSRHKKTITLTGKVLVTKFPSLCEGDVRMYE 892
Query: 559 AVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPA 618
AV++P LHH+ D +VFPQ G R P+E +GSDLDGD Y V WD +L + +Y+
Sbjct: 893 AVDIPELHHLQDVIVFPQTGPRSQPDEMAGSDLDGDEYAVIWDPQLFFERNQKAFEYS-- 950
Query: 619 QSMQLDHDVQIEDVEE----YFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEK 674
S + D E++++ ++T Y + +G+ + H +D+ S+ C +A K
Sbjct: 951 -SEKPDQHFAAEEMDDGFHWFYTEYAKQEDVGVTSINHLHQSDQ--FGINSDVCRSIAIK 1007
Query: 675 FSIAVDFPKTGVP---------AEIPPHLYVKEYPDFMEK--PDKPTYESQNVIGKLFRA 723
+A+D+ K+GV +E PP + PD+ P+Y+S ++G+L+R
Sbjct: 1008 NGMALDYAKSGVAPPPLTSVWSSEGPPERSERR-PDYANNRYNGSPSYQSSRLLGQLYRE 1066
Query: 724 VKDIAPHTSCIRLFTKEVARR---SYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYY 780
++ C+ E +++ + DP + G+E+ +D A H Y+ ++ ++MD Y
Sbjct: 1067 LR-------CVNDVCSEDSKQVPVAIDPLLTWQGWEEFVDGAHLHMTRYNAEVRSIMDTY 1119
Query: 781 GIKTEAEILTGSIMKMSKSFTKRR-------DAEAI--GMAVRALRKEARAWFKEKSGSD 831
G+ TEAEI +G ++ +++ D E++ R RK +F+E + D
Sbjct: 1120 GVATEAEIFSGCYREIRNRHSEKEQDDMSIYDTESVIETQMTRVFRKYREQFFEEFAPGD 1179
Query: 832 T-----------EDDAYAKASAWYHVTYHPD----------YWGCYNQGMNR-DHFLSFP 869
DD K V P Y CY N D LSF
Sbjct: 1180 NGYMRLTEVENPRDDEEEK-DVLRRVCRQPTGRMMAKAVAYYRDCYTAAQNSVDCRLSFA 1238
Query: 870 WCVYDRLVEIK-KDKTSIGNAFPA 892
W YD L ++ K+ + G+ P
Sbjct: 1239 WIAYDILNTVRGKNLLNSGDMAPV 1262
>gi|443899804|dbj|GAC77133.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
Length = 1455
Score = 270 bits (689), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 218/740 (29%), Positives = 355/740 (47%), Gaps = 84/740 (11%)
Query: 55 EILFKINLLVQNGC---VAGPLLDSNFYRLVDPYRAPVSISCIEHAL-----DKLYHLKE 106
++ ++++ L++NG A +L N +RL+ Y + E +++ + K
Sbjct: 341 KVAYQLDKLIRNGLYSPTALNILKQNTHRLIKSYGIDFAARVFESLAATSRQEQVRNRKT 400
Query: 107 CCYEPSRWLTDQYRKYMTSRSKPSSPAISLDD------GLVYVHRVQVTPSRVYFCGPEI 160
C S L ++ + + L + +V+ V +TP+R+ GP +
Sbjct: 401 KCLLGSTKLEERIETEEKRLKRQDAAQADLLEEQTNPTATAHVYHVTITPTRMLLDGPFM 460
Query: 161 NVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRN 220
+ SNRVLR F +F+R++F DED D+ + G + R RI L+
Sbjct: 461 DASNRVLRMFPDFGSHFVRVAFCDEDGDRFPVSRHDLDGIDSESFVRERIG----DPLKY 516
Query: 221 GILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTAAEIREWMGNFREI-RNVAKY 274
GI I RKFE LA+S S L W F + G A IR+ +GNFR I R A+
Sbjct: 517 GIAIAGRKFEALAWSGSGLGSHHCWFVTAFTDKVGKLWDAERIRQALGNFRSIDRYPARL 576
Query: 275 AARLGQSFSSSKETLSVHMDEIEIIPDV---------KIEIGKTKYVFSDGIGKVSA--- 322
ARL Q+FS++ ++++ D +EIIPD E + Y+ +DG+G++S
Sbjct: 577 GARLSQAFSATSSSITIENDWVEIIPDELSNAQMPSNGPERDRKYYLLTDGVGQISKSLL 636
Query: 323 -EFARKVASKCGLK-------DNP---PSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMR 370
E + G++ +P PSA Q R GG KGV+ +PT KK+ +R+SM
Sbjct: 637 DEIWHALCETRGMRREWRLSQQDPRRIPSAIQFRCGGAKGVLCLNPTLKGKKMIMRESMI 696
Query: 371 KYES-ELTKLDVLAWS-KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 428
K+ + + +L+V A S P LNR LI+ L LG+ D++F Q AV
Sbjct: 697 KFSAPKHRELEVAAHSFSPLPARLNRPLINALEDLGVKDDVFLNLQASAVESAQEARKSF 756
Query: 429 LKAQE---ALELMSPGENTNILKEL-LICGYKPDA---EPFLSMMLQTFRASKLLELRTK 481
+A + + + E + + L + G +PD + L + A+ L +L+ K
Sbjct: 757 KRASQLMGSFAMSDAAEMHKLFRRLDSVIGMRPDELDPDSILHRLCTIVIAAALGDLKRK 816
Query: 482 TRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRF-IVQGL 540
RI + G +++G +DE L GQ+F Q++ R + F IV+G
Sbjct: 817 ARIPV-QGCTLIGVVDEFNFLERGQIFAQVN----------------DRDQDEFRIVEGK 859
Query: 541 VVVAKNPCLHPGDVRVLKAVNVPALHHMV---DCVVFPQKGM-RPHPNECSGSDLDGDIY 596
V+V ++P +HPGDVRV+ AV P H ++ + +VF + RP + SG DLDGDIY
Sbjct: 860 VMVGRSPTIHPGDVRVVSAVKPPPGHPLLQLRNVIVFSKSPFGRPLQSILSGGDLDGDIY 919
Query: 597 FVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFA 656
+ D +L P + + P Y L ED+ ++F +Y++ND +G+++ H A
Sbjct: 920 TIYEDKDLFPTRTESPGQYKSVPPRSLARPCTFEDLADFFVDYVINDQVGLVSTFHLHIA 979
Query: 657 DREPRKARSEPCLQLAEKFSIAVDFPKTGVPA---EIPPHLYVKEYPDFM-EKPDKP-TY 711
D P + C++LA+ + AVD+ KTG ++P + PDF+ ++P P Y
Sbjct: 980 DTSPLHSLDPDCIKLAQLHAKAVDYRKTGQAVHRRDVPMPPFNSPRPDFLAQRPAGPGIY 1039
Query: 712 ESQNVIGKLFRAVKDIAPHT 731
S +GKLFRA+ + + T
Sbjct: 1040 SSTRALGKLFRAIPEQSTDT 1059
>gi|340517754|gb|EGR47997.1| predicted protein [Trichoderma reesei QM6a]
Length = 1250
Score = 270 bits (689), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 207/659 (31%), Positives = 315/659 (47%), Gaps = 72/659 (10%)
Query: 116 TDQYRKYM-TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDI 174
T+Q R+ T+R+ P P I D +V + VTP+R+ GP+ +NRVLR F
Sbjct: 406 TEQLRREEDTNRTAPYGPPIP--DSQTWVLKAVVTPTRIMLQGPDAENNNRVLRMFPHHS 463
Query: 175 DNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAF 234
D LR+ F DED DL+ S + + I+ R L++GI + RK+EFL F
Sbjct: 464 DYLLRVIFSDED-----GQDLALFPS----VDNSAIFGRYRKVLKDGIQVAGRKYEFLGF 514
Query: 235 SSSQLRESSAWM---FASRYGLTAAE-IREWMGNFREIRNVAKYAARLGQSFSSSKETLS 290
S S LR SAW F L E I +G+F EIR AK AAR+GQ+FS + +
Sbjct: 515 SHSSLRSHSAWFCAPFIDNMQLHNNESIINSLGDFSEIRIPAKCAARIGQAFSETPYAVD 574
Query: 291 VHMDEIEI--IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGG 348
+ I I IPDVK G VFSDG G +S + ++ + P + Q+R GG
Sbjct: 575 ILKCGIGIKYIPDVKTADGSR--VFSDGCGTISWDAIEEIWEHLPMTSTP-TCLQVRLGG 631
Query: 349 YKGVVAADPTSSKKLSL--RDSMRKYESELTKLDVLAWSKYQPC--FLNRQLISLLSTLG 404
KG+++ D K+ ++SM K+ S + + + +P LNRQ+I +L +G
Sbjct: 632 IKGMLSLDSRLKGKVICIRKESMMKFSSSDQTMLGICDTASKPLRFVLNRQIIKILEDMG 691
Query: 405 IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI---LKELLICGYKPDAEP 461
E F +Q +A+ L + + LE G + +K L G +
Sbjct: 692 TNAEWFIDQQNKALDVLRNVTATAVNTSTFLEYQLVGTTVGLPKLIKYLSKIGVDYRRDN 751
Query: 462 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG 521
F+ ++ +L L+ K RI + G ++ G +DET L G+++V Y ++ G
Sbjct: 752 FMKTVVDHTILEELRLLKHKARIPVDQGVTLFGIMDETGFLEEGEIYVTFDQQ-YDKVQG 810
Query: 522 ESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKG 578
+ + GLV++ ++P LHPGD++ + P LH + +CVVF QKG
Sbjct: 811 RV---------KHSLKDGLVLITRSPALHPGDIQPAQMRTPPEGHPLHDLKNCVVFSQKG 861
Query: 579 MRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTN 638
R P++ SG DLDGD+Y + WD +IP Q Y LD V +D+ ++F
Sbjct: 862 TRDLPSQLSGGDLDGDLYNIFWDPRVIPKQFFTAASYPRVIPPPLDRAVTRDDIADFFVT 921
Query: 639 YIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEI-------- 690
++ D LG+IAN H V AD + + C++LAE S AVD+ KTG+P +
Sbjct: 922 FMETDILGMIANRHQVSADAKEEGTLHQECIKLAELHSTAVDYSKTGIPVTVQQLPKAPR 981
Query: 691 ----------PPHLYVKEYPDFMEKP------------DKPT-YESQNVIGKLFRAVKD 726
P HLY ++ D + P KP Y+S ++G+L+R V +
Sbjct: 982 MRPDFMAPAPPAHLYDRDEVDHIGDPDSDDDDEDGLGVSKPRYYKSLKILGELYRGVDE 1040
>gi|296416873|ref|XP_002838094.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633999|emb|CAZ82285.1| unnamed protein product [Tuber melanosporum]
Length = 1218
Score = 268 bits (686), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 212/711 (29%), Positives = 333/711 (46%), Gaps = 90/711 (12%)
Query: 140 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKI---HSTDLS 196
+ VH V +TP+ YF GP NRVLR + + F+R++F +ED + + H D S
Sbjct: 437 MALVHHVSITPAGCYFFGPLPEPQNRVLRKYPDHHEYFIRVTFCEEDGEPLLFQHKVDQS 496
Query: 197 PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY----G 252
P + + R Y L GI I RKFEFL FSSS LR S W A Y
Sbjct: 497 PIYKN-----QFRFY------LSEGITIAGRKFEFLGFSSSSLRTQSCWFMAPFYLDGKY 545
Query: 253 LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYV 312
L + +G+F I KYAAR+GQ+FS + ++ V + IPDV + G+T
Sbjct: 546 LDPKIVTSRLGDFSSITCPGKYAARVGQAFSDTYGSIDVRAEHEVEIPDV-VRNGRT--- 601
Query: 313 FSDGIGKVSAEFARKVASKC-GLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMR 370
FSDG+G +S + +V + L+ P+ FQIR+ G KGVV+ D K LR SM
Sbjct: 602 FSDGVGTISQQLLDRVWRESESLRKTRPTVFQIRFAGAKGVVSLDTRLVGDKFCLRPSMI 661
Query: 371 KYE-SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 429
K+ S K+++ + + P +LNR LI +L +G+++ F Q+EA+ L T
Sbjct: 662 KFRGSSDRKIEICNSADWLPMYLNRPLIKVLEDIGVFESTFMTLQKEAIEDLRQSTTSVA 721
Query: 430 KAQEALELMSPGENTN----ILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 485
A L+ +++ L G+ + FL + + L L+ K RI
Sbjct: 722 NAANFLKRQRIASTAIRLPWVIESLNNLGFNFRDDHFLEQAFELSLITSLRSLKHKARIP 781
Query: 486 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 545
+ G +++G +DET L GQ++V + S+S S + G V++ +
Sbjct: 782 VKKGMTLVGVMDETGYLQEGQIYVTVQARDK----------STSES-----IAGRVLITR 826
Query: 546 NPCLHPGDVRVLKAVNV------PALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVC 599
+P HPGDV++ A+ L + +CV FPQ+G R P+ DL Y +
Sbjct: 827 SPVHHPGDVQMALAIGTNQLPPDSPLRALRNCVAFPQRGERDMPSMLGAPDL----YNII 882
Query: 600 WDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADRE 659
+D P +Y + L V+ D+ ++F ++ N+ LG+I++ H + AD++
Sbjct: 883 YDARFSLKTTYDPAEYPKVPTKDLGRPVKTSDIVDFFLEFMENNLLGMISSRHLITADKK 942
Query: 660 PRKARSEPCLQLAEKFSIAVDFPKTGVP---AEIP-------------PHLYVKEYPDF- 702
CL+LAE S AVDFPKTG+ ++ P P + +K P+F
Sbjct: 943 VEGVHHPDCLKLAELASTAVDFPKTGIKVSRSDFPKATFAKPDFMAPGPRILIKRGPEFV 1002
Query: 703 ---------MEKPDKPT--YESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDME 751
+ D PT YES+ V+GKL+R + + A KE R+ D
Sbjct: 1003 EEDVVPDDDDDDEDTPTLYYESEKVLGKLYREIDETAFLREVQGTVNKERRARNVDEGAV 1062
Query: 752 VDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTE-AEILTGSIMKMSKSFT 801
V G + +++AI NY ++ DY G+ E E G++ +M +++
Sbjct: 1063 VLGIWEWLEEAI--PSNYKWE-----DYIGVAAELKEAYEGNVERMMLNYS 1106
>gi|134114255|ref|XP_774375.1| hypothetical protein CNBG3560 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257010|gb|EAL19728.1| hypothetical protein CNBG3560 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1123
Score = 268 bits (686), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 239/792 (30%), Positives = 370/792 (46%), Gaps = 93/792 (11%)
Query: 140 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 199
LV + V VTP+R+ P+ SN V R + +D +R+ F DE+ D++ D
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADNMKLI 425
Query: 200 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 259
S I R+ L+ G++IG F +A S+SQ +E + W F + + E+R
Sbjct: 426 DSIN--PAVGIMARVRRALQFGLIIGGETFYPVASSASQQKEHAMW-FINNKVIDGLELR 482
Query: 260 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 319
WMG E VAK+AAR+G FS+S+ +++ ++ E +PD++ + F+DG G
Sbjct: 483 NWMGTVHETV-VAKHAARMGLPFSTSR-IVNMKINIGEELPDIE----RNGRCFTDGCGI 536
Query: 320 VSAEFARKVA----SKCGLKDNPPSAFQIRYGGYKGVVA--ADPTSSKKLSLRDSMRKYE 373
E + A K G+ ++ PSA Q R GG KGV++ + + ++ LR SM K++
Sbjct: 537 AGREVLNQAALALNEKVGI-NSQPSAIQFRLGGAKGVLSDWSQLVNEYEIRLRPSMIKFK 595
Query: 374 SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL----DAILTDPL 429
S+L L+V+ +KYQ FLNRQ I+++ G+ E+ +A+ + D + + +
Sbjct: 596 SDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNAV 655
Query: 430 KA--QEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 487
Q+ + L N L +L+ G+ + P L + L +L+ + R+ +
Sbjct: 656 TENDQQLIALC----NDFPLAQLIKSGF--NENPLLLDVAAIIECRALQDLKWRARVKLL 709
Query: 488 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNP 547
+G ++G DET TL G+VF Q F + IV V+V + P
Sbjct: 710 DGVYLIGIADETGTLKEGEVFCQ---------------FQENDESPPKIVVNEVLVCRAP 754
Query: 548 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 607
LHPGDVR AV+ P L H+ + +VF +GMR P+ G DLDGD Y + WD +
Sbjct: 755 ALHPGDVRRAWAVDNPELRHLKNVIVFSTQGMRDMPSMLGGGDLDGDDYTLIWDQRFVQS 814
Query: 608 QQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADR----EPRK 662
+ PMDY + + H Q + + E F YI+ND LG + N H +D +PR
Sbjct: 815 LKVYDPMDYEAPDPISVKHVTQ-KHLNENFVQYILNDVLGQVDNCHLALSDMYTPFDPR- 872
Query: 663 ARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPD-KPTYESQNVIGKLF 721
CL L+E S AVDF KTG A + P L KE+PDFM+K D K YES ++GK+F
Sbjct: 873 -----CLHLSEIHSTAVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVYESTGILGKIF 927
Query: 722 RAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDH---IDDAIYHKGNYDYKLGNLMD 778
R V+ A H S ++ + Y D + F H +D K +Y+ L M
Sbjct: 928 RIVQADA-HFS-----PSDLEQMGYPTDPRITRFPLHESLLDRLKPLKASYERDLQYDMR 981
Query: 779 YYGIKTEAEILTGSIMKMSKSFTKRRDA-------EAIGMAVRALRKEARAWFKEKSGSD 831
Y + E EI +G ++ +K + RD EA + V +R+ A+ +
Sbjct: 982 RYRV-YEPEIPSGIAIR-NKRRKRVRDQNLNEPLREAYNLLVNNVRETAQKIVNDFEFKT 1039
Query: 832 TEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHF------------------LSFPWCVY 873
T A Y +TY + + Q + F +SF WC
Sbjct: 1040 TLTPMQVVARHCYALTYEEVHVRQWEQALAEGKFGEKPEDDEDSERLRPKPLISFAWCFC 1099
Query: 874 DRLVEIKKDKTS 885
LV+I S
Sbjct: 1100 QELVQIVSQSAS 1111
>gi|393912446|gb|EFO21905.2| RNA dependent RNA polymerase [Loa loa]
Length = 1514
Score = 268 bits (685), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 240/835 (28%), Positives = 386/835 (46%), Gaps = 149/835 (17%)
Query: 117 DQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN 176
D RK T S L V + +V TP R+ PE+ ++NRV+RHF +
Sbjct: 438 DALRKVSTDEEAESLS--DLPHNCVLIRKVMATPLRLLLLPPEVMMTNRVIRHFGEEYA- 494
Query: 177 FLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSS 236
LR F D++ ++ + S RG + D + I I TL G+ I R ++FLA+S+
Sbjct: 495 -LRCVFRDDNGQRLVPKEFS-RGRALQDQSLI-IPDLIYRTLGTGLHIASRHYQFLAWSN 551
Query: 237 SQLRESSAWMFA---------SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKE 287
SQ+R+ +M++ + +IR WMG+F ++V K +R+GQ F+ ++
Sbjct: 552 SQMRDGGCYMYSDAVVNDEVHGQMICNVEDIRRWMGDFTASKSVPKMMSRMGQCFTQAQP 611
Query: 288 TLSVHMDEIEIIPD-----VKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAF 342
T+ + ++ ++ D V E G+ + FSDG+G++S ++A ++A L P S +
Sbjct: 612 TIMLEKNDWKVEDDIMGGIVHPETGEV-FNFSDGVGRISKKYADRIAEVLDLHPTP-SCY 669
Query: 343 QIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLST 402
Q + E +++V+ +S P L+R LI +L
Sbjct: 670 Q---------------------------EDEESAAEIEVVKYSMPAPVCLSRPLIMIL-- 700
Query: 403 LGIWDEIFEKKQRE---------------AVRQLDAILTDPLKAQEALELMSPGENTNIL 447
D++ EK+ R + +L A++ D A E EL S
Sbjct: 701 ----DQVSEKQSRHLHKKICSRIHSLLELELNKLSAMMFDENDAAE--ELSSRMSLPIDF 754
Query: 448 KELLICGYKPDAEPFL-SMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNY 504
+L G EPF S+++ R + L L +K++IF+P G +M G +D+T L +
Sbjct: 755 HQLHSSGITFTNEPFFRSLLIAIHRYNIKLHL-SKSKIFLPASMGHTMYGVVDDTGLLQH 813
Query: 505 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 564
GQVF+Q S + R + G ++ I G V+V KNPC GDVR+ +AV A
Sbjct: 814 GQVFIQYSPS-IRYVSG-----------KKIIYTGPVMVTKNPCHVAGDVRMFEAVYQDA 861
Query: 565 LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLD 624
L H+ D +VFP+ G RPH +E +GSDLDGD Y V +D EL + M + + + D
Sbjct: 862 LSHLCDVIVFPRYGPRPHCDEMAGSDLDGDEYTVIFDKELFFENNEQAMFFPKSIPTEYD 921
Query: 625 HDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKT 684
D+ ++F Y+ DS+G ++NAH + DR E C +A K ++AVDFPKT
Sbjct: 922 TPPTTGDMIDFFLKYLSQDSIGRMSNAHLIMCDR--LGLFHEICDSIARKCAVAVDFPKT 979
Query: 685 GVPAE-IPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFR---AVKDIAPHTSCIRLFTKE 740
GV A+ + H PD+M+ KP+Y S+ ++G+L+R V+DI+ +
Sbjct: 980 GVQAKPLILHEQCDSIPDYMQNTIKPSYRSKRLLGQLYRKAQKVEDISEAVQGAKF---- 1035
Query: 741 VARRSYDPDMEVDGFEDHIDDAIYH------------KGNYDYKLGNLMDYYGIKTEAEI 788
YDP + D++++H + Y ++ L+D YGI EA +
Sbjct: 1036 --ADYYDPQL--------YDESLFHEQPKLIQRSLRLRNEYYSRIQQLLDEYGISDEASV 1085
Query: 789 LTGSIMKMSKSFTKRRDAEAIG-----MAVRALRKEA---RAWFKE-------------- 826
++G + + + +D + + +R R A R +FKE
Sbjct: 1086 ISGHSLAIKRIVEMEKDDYSFYHSDKIVELRYSRIFAYFRREFFKEFGEESDFVSVDALG 1145
Query: 827 KSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKK 881
K G KA AWY VTY + + F SFPW V+D L+ IK+
Sbjct: 1146 KRGMRWNMALITKAKAWYAVTYASAF-------RSSSEFRSFPWIVWDILLIIKR 1193
>gi|312079416|ref|XP_003142164.1| RNA dependent RNA polymerase [Loa loa]
Length = 1486
Score = 268 bits (685), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 240/835 (28%), Positives = 386/835 (46%), Gaps = 149/835 (17%)
Query: 117 DQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN 176
D RK T S L V + +V TP R+ PE+ ++NRV+RHF +
Sbjct: 410 DALRKVSTDEEAESLS--DLPHNCVLIRKVMATPLRLLLLPPEVMMTNRVIRHFGEEYA- 466
Query: 177 FLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSS 236
LR F D++ ++ + S RG + D + I I TL G+ I R ++FLA+S+
Sbjct: 467 -LRCVFRDDNGQRLVPKEFS-RGRALQDQSLI-IPDLIYRTLGTGLHIASRHYQFLAWSN 523
Query: 237 SQLRESSAWMFA---------SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKE 287
SQ+R+ +M++ + +IR WMG+F ++V K +R+GQ F+ ++
Sbjct: 524 SQMRDGGCYMYSDAVVNDEVHGQMICNVEDIRRWMGDFTASKSVPKMMSRMGQCFTQAQP 583
Query: 288 TLSVHMDEIEIIPD-----VKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAF 342
T+ + ++ ++ D V E G+ + FSDG+G++S ++A ++A L P S +
Sbjct: 584 TIMLEKNDWKVEDDIMGGIVHPETGEV-FNFSDGVGRISKKYADRIAEVLDLHPTP-SCY 641
Query: 343 QIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLST 402
Q + E +++V+ +S P L+R LI +L
Sbjct: 642 Q---------------------------EDEESAAEIEVVKYSMPAPVCLSRPLIMIL-- 672
Query: 403 LGIWDEIFEKKQRE---------------AVRQLDAILTDPLKAQEALELMSPGENTNIL 447
D++ EK+ R + +L A++ D A E EL S
Sbjct: 673 ----DQVSEKQSRHLHKKICSRIHSLLELELNKLSAMMFDENDAAE--ELSSRMSLPIDF 726
Query: 448 KELLICGYKPDAEPFL-SMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNY 504
+L G EPF S+++ R + L L +K++IF+P G +M G +D+T L +
Sbjct: 727 HQLHSSGITFTNEPFFRSLLIAIHRYNIKLHL-SKSKIFLPASMGHTMYGVVDDTGLLQH 785
Query: 505 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 564
GQVF+Q S + R + G ++ I G V+V KNPC GDVR+ +AV A
Sbjct: 786 GQVFIQYSPS-IRYVSG-----------KKIIYTGPVMVTKNPCHVAGDVRMFEAVYQDA 833
Query: 565 LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLD 624
L H+ D +VFP+ G RPH +E +GSDLDGD Y V +D EL + M + + + D
Sbjct: 834 LSHLCDVIVFPRYGPRPHCDEMAGSDLDGDEYTVIFDKELFFENNEQAMFFPKSIPTEYD 893
Query: 625 HDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKT 684
D+ ++F Y+ DS+G ++NAH + DR E C +A K ++AVDFPKT
Sbjct: 894 TPPTTGDMIDFFLKYLSQDSIGRMSNAHLIMCDR--LGLFHEICDSIARKCAVAVDFPKT 951
Query: 685 GVPAE-IPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFR---AVKDIAPHTSCIRLFTKE 740
GV A+ + H PD+M+ KP+Y S+ ++G+L+R V+DI+ +
Sbjct: 952 GVQAKPLILHEQCDSIPDYMQNTIKPSYRSKRLLGQLYRKAQKVEDISEAVQGAKF---- 1007
Query: 741 VARRSYDPDMEVDGFEDHIDDAIYH------------KGNYDYKLGNLMDYYGIKTEAEI 788
YDP + D++++H + Y ++ L+D YGI EA +
Sbjct: 1008 --ADYYDPQL--------YDESLFHEQPKLIQRSLRLRNEYYSRIQQLLDEYGISDEASV 1057
Query: 789 LTGSIMKMSKSFTKRRDAEAIG-----MAVRALRKEA---RAWFKE-------------- 826
++G + + + +D + + +R R A R +FKE
Sbjct: 1058 ISGHSLAIKRIVEMEKDDYSFYHSDKIVELRYSRIFAYFRREFFKEFGEESDFVSVDALG 1117
Query: 827 KSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKK 881
K G KA AWY VTY + + F SFPW V+D L+ IK+
Sbjct: 1118 KRGMRWNMALITKAKAWYAVTYASAF-------RSSSEFRSFPWIVWDILLIIKR 1165
>gi|449550827|gb|EMD41791.1| hypothetical protein CERSUDRAFT_147107 [Ceriporiopsis subvermispora
B]
Length = 1211
Score = 268 bits (685), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 203/620 (32%), Positives = 317/620 (51%), Gaps = 66/620 (10%)
Query: 145 RVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATD 204
R+ VTP+ GP NRV+R R + D+FLR++F+DE+ + + D GS
Sbjct: 424 RLIVTPTTWSLEGPFPERFNRVIRTHRDNCDSFLRVAFVDENRLQ-YRFDREVDGSEF-- 480
Query: 205 ITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF-----ASRYGLTAAEIR 259
I R+ L NGI I R FEFLA+S S LRE + W AS + A I
Sbjct: 481 -----IRRRVKGLLINGITIAGRHFEFLAYSQSALREHAVWFVKSFTDASGACVDAPGII 535
Query: 260 EWMGNF------REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 313
+GNF + I A++AAR+ Q+F+++ ++SV +EI I+ D++ + +F
Sbjct: 536 RTLGNFHVNYDPQLIYCPARWAARVSQAFTATDASVSVEAEEIIILDDIE---DSNRRLF 592
Query: 314 SDGIGKVSAEFARKV-----ASKCGLKDNP--PSAFQIRYGGYKGVVAADPT-SSKKLSL 365
+DG+G +SAE A+ + A + + P P AFQIR+GG KG+++ D T + + L
Sbjct: 593 TDGVGTISAELAKAIWKELCARRHRNRRRPAYPRAFQIRFGGSKGMLSVDYTLEGRIICL 652
Query: 366 RDSMRKYESELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 423
R SM K+E+ + + +A + +P +LNR LI LL LG+ ++F+K Q +AV+ ++
Sbjct: 653 RRSMIKFEAPHSMVVEVARAFDRPGKYYLNRPLIMLLEGLGVPYDVFQKLQDDAVQHVEE 712
Query: 424 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLS----MMLQTFRASKLL-EL 478
A LE G + L +++ +K EPF+ + F + +L EL
Sbjct: 713 SRGSLETAARLLETHGLGSSFR-LTSVMLALHKLGVEPFMQDVFWRQMMDFAVNHVLREL 771
Query: 479 RTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ 538
+ RI +P+G +++G D L GQ+F I G + ++ ++
Sbjct: 772 KHHARIPVPDGWTLVGVADVHGFLEEGQIFACIIPTD-----GAAPIY----------LE 816
Query: 539 GLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFPQKGMRPHPNECSGSDLD 592
G +++++P +HPGDV+V+ A+ P A + + VVF KG RP P+ G DLD
Sbjct: 817 GPTLISRSPTIHPGDVQVVHAIGKPPPNSPFAKESLRNTVVFSIKGSRPLPSCLGGGDLD 876
Query: 593 GDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAH 652
GD+Y + EL P + P Y A+ L + DV ++ YI++D+LGIIA
Sbjct: 877 GDVYNLTTMPELRPRRTYEPASYAAAEKKLLIRPCTMADVADFVAEYIISDTLGIIAINW 936
Query: 653 TVFADREPRKARSEPCLQLAEKFSIAVDFPKTG--VPAEIPPHLYVKEYPDF-----MEK 705
+ AD+ R CL LA S AVD+PK+G VP E P L + PD+ ++
Sbjct: 937 LIIADQSVEGIRDPACLLLAALHSDAVDYPKSGRPVPVENIPRLKFRAKPDWNAPETLKG 996
Query: 706 PDKPTYESQNVIGKLFRAVK 725
YESQ IGKLFR++
Sbjct: 997 DAVEFYESQRAIGKLFRSIN 1016
>gi|171683804|ref|XP_001906844.1| hypothetical protein [Podospora anserina S mat+]
gi|170941862|emb|CAP67515.1| unnamed protein product [Podospora anserina S mat+]
Length = 1230
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 180/559 (32%), Positives = 286/559 (51%), Gaps = 43/559 (7%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
+ RV ++P R+ GPE+ NR+LR F + F R+ DE+ DL + +
Sbjct: 443 IFRVSISPMRITLHGPELETKNRILRKFDGKANFFFRVQLCDEN-----GQDLLFNPTIS 497
Query: 203 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIRE-- 260
D +Y+R S LR GI + R+++FL FS S LR S W A Y +I E
Sbjct: 498 LDT----VYSRFKSILRKGIAVAGRQYKFLGFSHSSLRAHSLWFSAPFYHEGKLQIPEHI 553
Query: 261 --WMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIEIGKTKYVFSDG 316
+G+F IR+ A+ AAR+GQ+F+ + ++S+ + ++ IPDV+ + VFSDG
Sbjct: 554 IEQLGDFAPIRSPARCAARIGQAFTETPYSVSLVDNGVQTSEIPDVE----RNGRVFSDG 609
Query: 317 IGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYES- 374
+G +S + A + P+ FQIR+ G KG+++ D ++ +R SM+K+ES
Sbjct: 610 VGVLSPQAAEAIHDAIPESKGEPTCFQIRWAGAKGMLSLDTELEGSQICIRPSMKKFESP 669
Query: 375 ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 433
+ LD+ SK P LNRQ+I +L + F + QR+ V L AI
Sbjct: 670 DEANLDICDMASKPIPMMLNRQMIKILEDMDAPPWWFLELQRKEVNHLRAITRTVSSTAS 729
Query: 434 ALELMSPGENT---NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 490
L + GE+ ++L++ G + FL +++ ++ ++ K RI +P G
Sbjct: 730 FLAMKDIGESIRLPHLLRQTEAMGVDYHQDLFLRSVVEMALLKEIKLIKHKARIPVPKGI 789
Query: 491 SMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLH 550
++ G +DET L GQV+V R + Q+ VV+ ++P LH
Sbjct: 790 TLFGVMDETGFLQEGQVYVSFDTMQGR--------YHEPPECQK------VVITRSPALH 835
Query: 551 PGDVRVLKAVNVPALHHMV---DCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 607
PGD+++ V P H ++ +CVVF Q+G R P+ SG DLDGDIY + WD+ ++
Sbjct: 836 PGDIQLAHHVIPPEGHPLLELRNCVVFSQRGDRDLPSMLSGGDLDGDIYNIIWDEAIVSQ 895
Query: 608 QQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSE 666
+ P DY ++L V+ +D+ ++F ++I D LG+IA H + AD P+ R
Sbjct: 896 VRSFSPADYPRLPIVELGRKVEADDMIDFFVDFISQDCLGVIATRHMILADLAPQGTRDS 955
Query: 667 PCLQLAEKFSIAVDFPKTG 685
C++LAE S AVDF KTG
Sbjct: 956 DCVKLAELHSQAVDFSKTG 974
>gi|328874858|gb|EGG23223.1| RNA-directed RNA polymerase [Dictyostelium fasciculatum]
Length = 2645
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 246/861 (28%), Positives = 391/861 (45%), Gaps = 128/861 (14%)
Query: 58 FKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTD 117
+ +N+L N L+DS FY +D + E+ + L + +R+
Sbjct: 1014 YLLNVLKSNKEFGKTLIDSKFYENMDLVKGK------ENRYEYLMRAIDSAPFDNRF--- 1064
Query: 118 QYRKYMTSRSKPSSPAISLD---DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDI 174
Y+ + +SP SL + + V +TP+R F P + NR LR R
Sbjct: 1065 -YQIDRIGKVNLNSPLDSLQATRENYALIKNVYITPTRTLFQKPSMYQLNRALR--RYGA 1121
Query: 175 DNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTR-ILSTLRNGILI-GDRKFEFL 232
DNFL + F++E+LD+ + ++ T+ I + L GI+I G +F ++
Sbjct: 1122 DNFLLVHFVEENLDE--------------KVEYSKFQTKSIENILLEGIMIEGIGRFHYI 1167
Query: 233 AFSSSQLRESSAWMFASRYGLTAAEIREWMGNFR---EIRNVAKYAARLGQSFSSSKETL 289
S+SQ R SS W +R + IR + + I N KY LG FS + ++
Sbjct: 1168 GNSASQARSSSCWFTNNRNDIDT--IRNQLVDLSINTGIANPRKYLRSLGLVFSGTTPSI 1225
Query: 290 SVHMDEI-EIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGG 348
+ ++ E + DV+ + +F++GIG + A K+ ++ S++QIR GG
Sbjct: 1226 IIPNNQYNENLDDVR----NDEAIFTEGIGFIGKNLANKINAENSFPLGT-SSYQIRIGG 1280
Query: 349 YKGVVAADPTSSKKLSLRDSMRKYE---SELTK-LDVLAWSKYQPCFLNRQLISLLSTLG 404
KGVV+ + + LR+SM+K+ SE+ + L++++ + + C LNRQ+I+L LG
Sbjct: 1281 NKGVVSVHHSIENGIYLRNSMKKFNTNNSEMNRTLEIISIASKKNCTLNRQIINLFGGLG 1340
Query: 405 IWDEIFEKKQREAVRQLDAILTDPLKAQEAL---ELMSPGENTNILKELLICGYKPDAEP 461
+ D +F E + +L IL D A+ L + + E T KELL +P
Sbjct: 1341 VPDRLFLMLVMECLEKLALILQDSSMARSELKNIDFFNQSEPTE--KELLY-------DP 1391
Query: 462 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG 521
+ +L T +L + I I N R+++G +DET TL QVFV+I+
Sbjct: 1392 LIRRILHTLYKKQLTKYLDFCFIPIKNARTLLGVIDETGTLEENQVFVRIT--------- 1442
Query: 522 ESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRP 581
+ + + ++Q V V KNPCLHPGDV++ V+ LHHM+D VVF QKG P
Sbjct: 1443 -------ADNNEIIVIQSNVAVVKNPCLHPGDVQLAMGVDNQLLHHMLDVVVFSQKGTIP 1495
Query: 582 HPNECSGSDLDGDIYFVCWDDELIPP-QQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYI 640
++CSGSDLDGD YFVC+D +++ Q P++S ++ + V + F
Sbjct: 1496 LFSKCSGSDLDGDRYFVCFDTDMVNTIVQHKDFCNLPSKSDSTVKEINKDTVIQQFIENT 1555
Query: 641 VNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHL-----Y 695
LG IA +H +D + + ++LA + VDF KT + +P Y
Sbjct: 1556 QKGRLGQIALSHLAISDY--KSPTDDLAIELAIEHFKEVDFVKTNIHGTVPEQALELTNY 1613
Query: 696 VKEYPDFMEK---PDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEV 752
+ YP FM+ +K ES V+GK++ C L V+ Y PD V
Sbjct: 1614 GRRYPMFMKASVGANKEFSESTKVLGKIY---------NQCSSL----VSVAQYLPDSRV 1660
Query: 753 D------GFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSI-MKMSKSFTKRRD 805
D G+ED+++DA + NY ++ L Y I+ E +I++ + MS S +
Sbjct: 1661 DESILVSGYEDYVEDARHQFKNYKKEIRYLRSKYNIEKEEDIISSYMDNSMSGSSYSKNI 1720
Query: 806 AEAIGMAVRALRKEARAWF------KEKSGSDTEDDAY--------AKASAWYHVTYHPD 851
E L R F KE G +++D K SAWY V+Y D
Sbjct: 1721 VEDAYNQFSVLAVHYRDLFLLPFKSKESGGGVSDEDIVIKYRQEIDKKVSAWYFVSYGDD 1780
Query: 852 YWGCYNQGMNRDHFLSFPWCV 872
+ LSF W V
Sbjct: 1781 ---------KLEKVLSFYWIV 1792
>gi|238508311|ref|XP_002385352.1| RNA-dependent RNA polymerase, putative [Aspergillus flavus
NRRL3357]
gi|220688871|gb|EED45223.1| RNA-dependent RNA polymerase, putative [Aspergillus flavus
NRRL3357]
Length = 1107
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 207/704 (29%), Positives = 329/704 (46%), Gaps = 67/704 (9%)
Query: 51 ALPYEILFKINLLVQNGCV-------AGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYH 103
++P+ ILF++ L QN + L F R P+++ + KL++
Sbjct: 292 SVPFGILFQLQALAQNAYLHPTTSRKLAEGLRKRFAEDEAAGRDPITVD----GMRKLFN 347
Query: 104 LKECCY---EPSRWLTDQYRKYMTSRSKPSSPAISLDDGL-------VYVHRVQVTPSRV 153
+ + +P + D + + + + +GL VHRV VTP+R+
Sbjct: 348 MIGWPFPGDDPRVYEVDFLVATLEANHREIQDGFAYREGLHENTVNMTKVHRVNVTPTRI 407
Query: 154 YFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTR 213
GPE+ NR+LR F + F+R+ F DE+ + + ++ I+ R
Sbjct: 408 TLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGEGLLFN---------ANVDYKDIFGR 458
Query: 214 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTAAEIREWMGNFREI 268
+ + GI I R + FL FS S LR + W F G T I +G F I
Sbjct: 459 FIDIMTRGIQIAGRTYNFLGFSHSSLRSRAVWFSSPFVDDNGHMQTYFSIVSAIGKFSHI 518
Query: 269 RNVAKYAARLGQSFSSS--KETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFAR 326
+ A+ AAR+GQ+F+ + L H + IPD+ G VFSDG+G +S E
Sbjct: 519 TSPARCAARIGQAFTETPFMVPLEKHGVLVSTIPDLTSPDGSR--VFSDGVGAISREVVA 576
Query: 327 KVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESE-LTKLDVLAW 384
+ + LK P+ FQIR G KG++AAD + + +R SM K++SE + L++
Sbjct: 577 SIWADIPLKRGNPTCFQIRLGRAKGMLAADSRLRTAVIQIRPSMIKFDSEDMKNLEICNM 636
Query: 385 -SKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN 443
S+ P LNRQ+I +L +G + F + Q E + +L +I K L+ S E
Sbjct: 637 ASRPYPMVLNRQVIKILEDMGASKDWFFQMQNEELTRLQSITVSTDKTARFLKDKSVAEC 696
Query: 444 TNILKELLIC-----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 498
+ + C YK D FL +++ +L L+ K RI + G ++ G +DE
Sbjct: 697 IGLYRLYRQCYWTRLNYKKDG--FLRAIVEAVVLRELRLLKHKARIPVKKGMTLYGVIDE 754
Query: 499 TRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLK 558
T L G+V+V + ++ G + G ++V ++P LH GD++ +
Sbjct: 755 TGFLQEGEVYVT-----FDRMEGRYAAPPGP---------GHILVTRSPALHCGDIQRAQ 800
Query: 559 AVNVPALH---HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDY 615
V P H + +C+VF QKG R P++ SG DLDGD+Y V WD EL + P DY
Sbjct: 801 NVIPPEDHPLRYHRNCIVFSQKGSRDLPSKLSGGDLDGDLYHVIWDPELESVETFAPADY 860
Query: 616 TPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKF 675
S+ + DV+++D+ +F ++ +D LG+IA H V AD+ R C LA
Sbjct: 861 PRPTSIDIGRDVRVDDMAAFFVEFMRSDILGMIAIRHMVMADQAASGTRDTSCRLLAGLH 920
Query: 676 SIAVDFPKTGVPAEIPPHLYVKEY-PDFMEKPDKPTYESQNVIG 718
S AVDF KTG+P + V Y PDF+ + +++ IG
Sbjct: 921 SKAVDFSKTGIPVNMEDMPRVNRYRPDFLAPGPQTRLYNKSKIG 964
>gi|242221257|ref|XP_002476381.1| predicted protein [Postia placenta Mad-698-R]
gi|220724386|gb|EED78433.1| predicted protein [Postia placenta Mad-698-R]
Length = 1141
Score = 266 bits (680), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 235/811 (28%), Positives = 368/811 (45%), Gaps = 126/811 (15%)
Query: 145 RVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATD 204
RV VTP+ ++ GP+ SNRV R + NFLR++F+DE T L R D
Sbjct: 374 RVIVTPTCLHLEGPDPERSNRVFRRYPGQEQNFLRVTFVDE-------TRLMYRFDREVD 426
Query: 205 ITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW--- 261
R I R+ L G+ I R FEFLA+S S L+E + W E+R
Sbjct: 427 -GRGFINRRVRHMLVQGLTIAGRHFEFLAYSQSALKEHAVWFVTPFRDPDGREVRASTII 485
Query: 262 --MGNFRE------IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 313
+G+FR I A+YAAR+ Q+F+++ ++SV ++E+ PD+K G+ Y F
Sbjct: 486 ASLGSFRPAFEPQLIYCPARYAARISQAFTATDSSISVELEEVFYDPDIKDNTGQ--YCF 543
Query: 314 SDGIGKVSAEFARKVASKCGLKDNPPSA-------FQIRYGGYKGVVAAD-PTSSKKLSL 365
+DG+G++S AR ++S+ K FQIR+ G KG+++ D S + + L
Sbjct: 544 TDGVGRISPALARAISSELRAKKRRARRARTYTRLFQIRFMGSKGMLSVDYQLSDRSIFL 603
Query: 366 RDSMRKYES--ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 423
R SM K+++ L A+ K +LNR LI LL LG+ E+FE Q +AV+ +
Sbjct: 604 RPSMIKFDAPDSLNVEIAQAFDKPGKYYLNRPLIMLLEGLGVPYEVFEALQDDAVQDAEG 663
Query: 424 ILTDPLKAQEALELMSPGEN---TNILKELLICGYKPDAEPFLSMMLQTFRASKLL-ELR 479
+ + LE G + ++ + + G +P +E + F + +L EL+
Sbjct: 664 AVHSLESSARLLEAYGLGASFRLSSTMVNMHRLGLRPLSEDIFWQQMMDFAVNHVLRELK 723
Query: 480 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 539
RI +P+G +++G D L G++F + S + ++G
Sbjct: 724 HHARIPLPDGWTLVGVADVHGYLEEGEIFACVD---------------SPDLLEPIYLEG 768
Query: 540 LVVVAKNPCLHPGDVRVLKAVNVPA----LHH--MVDCVVFPQKGMRPHPNECSGSDLDG 593
V++++P +HPGDV+++ A+ P H + + VVF KG RP P+ G DLDG
Sbjct: 769 PTVISRSPTIHPGDVQLVHAIGRPPPGSPFEHESLRNGVVFSIKGERPLPSCLGGGDLDG 828
Query: 594 DIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHT 653
D+Y V L P + Y PA +DH +EDV ++ YI +D+LGIIA
Sbjct: 829 DVYNVTTMPSLRPARTYRSGSYKPAVKKTVDHPSTMEDVADFVAEYINSDTLGIIAINWL 888
Query: 654 VFADREPRKARSEPCLQLAEKFSIAVDFPKTG--VPAEIPPHLYVKEYPDF-----MEKP 706
+ AD+ CL+LA+ S AVD+PK+G VP E P L K PD+ + +
Sbjct: 889 IIADQSSEGILDPHCLRLAQLHSDAVDYPKSGNPVPLERIPRLKFKAKPDWNAPETLTRA 948
Query: 707 DKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTK--EVARRSYDPDME------VDGF-ED 757
YES IG+L+R ++ +R T+ RR+ + E +DGF ED
Sbjct: 949 TPDFYESTRAIGRLYRRIE-----LPALRTVTRASRFQRRNLEDGHELTLADILDGFQED 1003
Query: 758 HIDDAIYHKGNYDYKLGNLMDYY------------------GIKTEAEILTGSIMKMSKS 799
++D+ + +L L +YY + TE E + G+I+
Sbjct: 1004 NVDEDVIS------RLWELFEYYSSRLRTICADHTLSDSRSAMLTEEEAVIGTIVAKCSQ 1057
Query: 800 FTKRRDA-----EAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWG 854
KR+D E V ++R E EDD ++ S W
Sbjct: 1058 PRKRKDLMSQLREQTATLVASVRDEIAG----------EDDTPSEKSL-------ERAWI 1100
Query: 855 CYNQGMNRDHFL---SFPWCVYDRLVEIKKD 882
YN + D + SF W + + KD
Sbjct: 1101 AYNIALMEDDYFGARSFAWIALGEIFDAIKD 1131
>gi|400598650|gb|EJP66359.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 1260
Score = 266 bits (679), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 204/637 (32%), Positives = 307/637 (48%), Gaps = 77/637 (12%)
Query: 141 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS--PR 198
+V + V P+R++ GP+ NRVLR F D FLR++F DED DLS PR
Sbjct: 441 TWVFKAMVAPTRIFLQGPDPESRNRVLRMFPDHGDYFLRVTFCDED-----GQDLSFNPR 495
Query: 199 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAE- 257
++ IY R L GI I R+F FL FS S LR S W A G
Sbjct: 496 ------VSNDAIYERYRQVLIKGIRIAGRQFSFLGFSHSSLRSHSTWFMAPFVGADGQRQ 549
Query: 258 ----IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIEIGKTKY 311
I +G+F +IR AK AAR+GQ+FS + + + I + IPDVK G+
Sbjct: 550 SRDTILAALGDFSDIRIPAKCAARIGQAFSETPYAVDLFKSGIGVRWIPDVKSADGER-- 607
Query: 312 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL--RDSM 369
VFSDG+G +S + + + FQIR+ G KG++ D K+ ++SM
Sbjct: 608 VFSDGVGTLSRAAVEEFCKALPGRSTTATCFQIRWAGVKGLLVLDTRLQGKVICVRKESM 667
Query: 370 RKYESE-LTKLDV--LAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT 426
K+ S+ L +L + LA S+ LNRQ+I +L +G D F Q +A+ L A+
Sbjct: 668 MKFPSQDLQELGICDLA-SRPLRLVLNRQVIKILEDMGTRDSWFLALQHDALEFLRAVTA 726
Query: 427 DPLKAQEALELMSPGEN---TNILKEL--LICGYKPDAEPFLSMMLQTFRASKLLELRTK 481
L L+ G ++ +K+L + Y+ DA FL +++ +L L+ K
Sbjct: 727 TALNTSTFLQYQDIGSAIGLSSFIKQLDKMDIDYRRDA--FLKSVVEHVVLRELRLLKHK 784
Query: 482 TRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLV 541
RI + G ++ G +DET L QV+V Y G+S + G +
Sbjct: 785 ARIPVHKGVTLFGVMDETGFLQENQVYVT-----YDATRGKSG-----ERLDTTLTDGPI 834
Query: 542 VVAKNPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 598
+V ++P LHPGD++ ++ V P H + +C+VF QKG R P++ SG DLDGD+Y +
Sbjct: 835 IVTRSPALHPGDIQYVQMVTPPESHPLRSLRNCIVFSQKGSRDLPSQLSGGDLDGDLYNI 894
Query: 599 CWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADR 658
WD P P DYT LD V +D+ ++F +++ +D LG+IA H + AD
Sbjct: 895 IWDPRARPQWTFAPADYTRVVPPSLDRPVTRQDIADFFVDFMKSDILGLIAIRHQIMADV 954
Query: 659 EPRKARSEPCLQLAEKFSIAVDFPKTGVP-----------------AEIPP-HLY-VKEY 699
+ + C++LAE S AVD+ KTG+ A PP HLY + +
Sbjct: 955 QDLGTQDGECIRLAEMHSTAVDYSKTGIAVNWRDLPRAPRSRPDFLAPAPPLHLYDLGQI 1014
Query: 700 PDFMEKPD---------KPTYE-SQNVIGKLFRAVKD 726
E+ D KP Y S+ ++G+L+R + +
Sbjct: 1015 GHIAEEDDDDGNDMALAKPRYHRSEKILGRLYREIDE 1051
>gi|346325370|gb|EGX94967.1| rna-dependent rna polymerase [Cordyceps militaris CM01]
Length = 1252
Score = 265 bits (677), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 190/583 (32%), Positives = 278/583 (47%), Gaps = 48/583 (8%)
Query: 125 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 184
SRS P+I +V + V+P+R+ GP+ NRVLR F D FLR+SF D
Sbjct: 421 SRSGVYGPSIPPHQ--TWVFKAIVSPTRISLQGPDPESRNRVLRMFPDRGDQFLRVSFCD 478
Query: 185 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 244
ED ++ +PR ++ IY R L GI I R F FL FS S LR S
Sbjct: 479 EDGQRLA---FNPR------VSNDPIYERFREVLTKGIRIAGRHFSFLGFSHSSLRSHST 529
Query: 245 WMFASRYGLTAAE-----IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI- 298
W A I +GNF +I AK AAR+GQ+FS + + + I +
Sbjct: 530 WFLAPFIDADGQRQNRDTILAVLGNFSDILTPAKCAARIGQAFSETPYAVDLFETRIGVR 589
Query: 299 -IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP 357
IPDVK G VFSDG+G +S + + FQIR+ G KG++ DP
Sbjct: 590 WIPDVKSADGNR--VFSDGVGTISWGAVEDFWKALPKRSAGVTCFQIRWAGVKGLLVLDP 647
Query: 358 TSSKKLSL--RDSMRKYES----ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFE 411
K+ ++SM K+ S EL DV S+ LNRQ+I +L +G F
Sbjct: 648 RLPGKVICVRKESMMKFPSQDLKELGICDVA--SRPLRLVLNRQVIKILEDMGTSASWFL 705
Query: 412 KKQREAVRQLDAILTDPLKAQEALELMSPGENTNI---LKEL--LICGYKPDAEPFLSMM 466
Q +A+ L A+ PL L+ G + +K+L + Y+ D FL +
Sbjct: 706 ALQNDALDFLRAVTATPLNTSTFLQYQDIGSAIGLPSFIKQLSKMDIDYRHDT--FLKSV 763
Query: 467 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLF 526
++ +L L+ K RI +P G ++ G +DET L +V++ +S+
Sbjct: 764 VEHVVLRELRLLKHKARIPVPKGVTLFGVMDETGFLGENEVYITF----------DSTRG 813
Query: 527 SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRPHP 583
S ++ G V+V ++P LHPGD+++ K V P H + +C+ F Q+G R P
Sbjct: 814 KSGERMDATLIDGPVIVTRSPALHPGDIQIAKMVTPPDSHPLKSLRNCIAFSQRGSRDLP 873
Query: 584 NECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVND 643
++ SG DLDGD+Y V WD + P P DYT LD V D+ +F +++ +D
Sbjct: 874 SQLSGGDLDGDLYNVIWDPKAYPKHTFDPADYTRVVPPSLDRPVTRHDIANFFIDFMRSD 933
Query: 644 SLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGV 686
LG+IA H + AD + C++LAE S AVD+ KTG+
Sbjct: 934 ILGLIATRHQILADVQEAGTSDASCIKLAEMHSTAVDYSKTGI 976
>gi|367053924|ref|XP_003657340.1| hypothetical protein THITE_2147717 [Thielavia terrestris NRRL 8126]
gi|347004606|gb|AEO71004.1| hypothetical protein THITE_2147717 [Thielavia terrestris NRRL 8126]
Length = 1241
Score = 265 bits (676), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 217/748 (29%), Positives = 346/748 (46%), Gaps = 102/748 (13%)
Query: 48 DGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRA---------PVSISCIEHAL 98
DG +LP+ +LF + LV NG + + + +LV + A PVS+ +
Sbjct: 325 DG-SLPFGLLFLLQALVANGYLHPATVSALARKLVALFAAAKPAWRSQPPVSVDAFKQLF 383
Query: 99 DKL-YHLKECCYEPSRWLTDQYRKYMTS-----RSKPSSPAISLDDGLVY--VHRVQVTP 150
+ Y +P+ + D +Y+ R ++ A DD + + R VTP
Sbjct: 384 QWIDYPTPPPNGDPNMFSVDGIMEYLQGAERLVREGSATRAAIFDDAPIRARIFRATVTP 443
Query: 151 SRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRI 210
+R+ GPE+ NRVLR F D F+R F DE+ DL + D +
Sbjct: 444 TRITLHGPELEPMNRVLRKFS-DHSYFIRAQFCDEN-----GQDLFFNAKVSLDA----V 493
Query: 211 YTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW----MGNFR 266
+ R S L +GI + R ++ L FS S LR SAW+ A +I + +G+F
Sbjct: 494 FDRFKSVLTDGIQVAGRVYKLLGFSHSSLRAHSAWLSAPFIHEGRVQIPDLIITGLGDFN 553
Query: 267 EIRNVAKYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIEIGKTKYVFSDGIGKVSAEF 324
I++ A+ AAR+GQ+FS + + + + I++ +PDV+ + VFSDG+G +SA
Sbjct: 554 RIQSPARRAARIGQAFSETPYAVDLDENMIQVLEVPDVE----RNGRVFSDGVGTISAGA 609
Query: 325 ARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELTKLDVL- 382
A V + P+ FQIR+ G KG+++ DP K+ +R SM K+ES +L++
Sbjct: 610 ADAVYNVIPKSKGYPTCFQIRWAGAKGMLSLDPRLEGNKICIRPSMVKFESNDRQLEICD 669
Query: 383 AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGE 442
S+ P LN QLI +L +G D+ F + Q +++L A+ + G+
Sbjct: 670 MASRPIPMVLNHQLIKILEDMGAPDKWFLELQNRELQRLRAVTATVCNTASFVRAKKIGQ 729
Query: 443 NTNILKELL---ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET 499
+ + K LL G + FL ++ ++L L+ K RI +P G ++ G +DET
Sbjct: 730 SIQLHKLLLQTEAMGLDYWQDDFLRTAVEAIVLNELRLLKHKARIPVPKGITLFGIMDET 789
Query: 500 RTLNYGQVFVQISGAG-YRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLK 558
L+ G+V+V Y Q G G V+VA++P LHPGD++V
Sbjct: 790 GFLDEGEVYVTYDAEDRYCQPPGP----------------GPVIVARSPALHPGDIQVAY 833
Query: 559 AVNVPALHHMV---DCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD-PPMD 614
P H ++ +C++F G R P++ SG DLDGD + V WD +++ P
Sbjct: 834 NRIPPDGHPLIQQRNCLIFSSWGDRDLPSQLSGGDLDGDQFHVIWDPQVVASVITFEPAK 893
Query: 615 YTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEK 674
Y ++LD V D+ +F +++ D LG+IA H + AD+ + C++LAE
Sbjct: 894 YDRVSPLELDRPVVSADIAAFFVDFMRTDHLGVIATRHKILADQREGGTLDQDCVRLAEL 953
Query: 675 FSIAVDFPKTGVPA---EIPPHLYVKEYPDFMEK-------------------------- 705
S AVDF KTG E+P L K PDF+ +
Sbjct: 954 HSRAVDFSKTGRAVERWELPQSL--KWRPDFLSRGPEIKIHDISAIELDQYAASRGDEDV 1011
Query: 706 -------PDKPTYESQNVIGKLFRAVKD 726
P Y S+ ++GKL+RAV +
Sbjct: 1012 DDVNDEGPQHRYYRSEKILGKLYRAVDE 1039
>gi|145547505|ref|XP_001459434.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74830373|emb|CAI39057.1| RNA-dependent RNA polymerase [Paramecium tetraurelia]
gi|124427259|emb|CAK92037.1| unnamed protein product [Paramecium tetraurelia]
Length = 1331
Score = 263 bits (673), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 198/623 (31%), Positives = 319/623 (51%), Gaps = 76/623 (12%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
+ RV +TPS F ++ ++R + +DNF+R+ F DE+L+ IH
Sbjct: 513 IKRVSLTPSGYIFNLKLPEETSEIIRQYYNQLDNFIRLHFEDENLETIHGHHYI------ 566
Query: 203 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA-SRYGLTAAEIREW 261
T Y + S L NG+ + +F L +S+SQLR S W+F +R ++ +
Sbjct: 567 -----TEYYFK--SKLSNGLHLLGEQFRLLTWSASQLRGGSCWIFNYNRAQISRQNFIDS 619
Query: 262 MGNFREIR--NVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 319
+GNF + VAK AARLGQ+FSSSK S+ + +I + V ++G +++DGIGK
Sbjct: 620 IGNFNTLNMDQVAKNAARLGQNFSSSK---SIDLRQIIVKTQVPDKVGDNGKLYTDGIGK 676
Query: 320 VSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAA-DPTSSKKLSLRDSMRKYESEL-- 376
+S + + + ++ SA Q+RY G KGV+ D + LR SM K+ L
Sbjct: 677 ISRNLIEMI--RVEMNNHTISAIQVRYHGAKGVLLLNDDLPDNTIELRKSMIKFNPTLMN 734
Query: 377 -----TKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL------DAIL 425
T + +L ++K++ +LNRQ+I LL TLGI +E+F + QRE + ++ D+ +
Sbjct: 735 DGNYKTMISLLDYNKFRGGYLNRQIIILLVTLGIQEEVFMQLQREYLHKIANLSAVDSSI 794
Query: 426 TDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 485
+ EL + ++ ++ + ++ +L + L++LRTK+ I
Sbjct: 795 YNHFLVDYNGELQGLPSIIDNIRMMINANLNENNNHYIKRVLDRLKRRGLMQLRTKSNIL 854
Query: 486 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 545
+ ++G +D+ L+ G+V + S ++I G ++V +
Sbjct: 855 MDQAARVLGVVDDYDILDQGEVVCIVK--------------QSLDVNHKYIT-GEIIVVR 899
Query: 546 NPCLHPGDVRVLKAVN---VPALHHM-------VDCVVFPQKGMRPHPNECSGSDLDGDI 595
NPCLHPGD+R ++A++ + + ++M +C+VFP KG P +C G DLDGDI
Sbjct: 900 NPCLHPGDIRKVRALSENEILSRYNMKNPFAEYYNCIVFPCKG-NSIPADCGGGDLDGDI 958
Query: 596 YFVCWDDELIPPQQDPPMDY----TPA----QSMQLDHDVQIED------VEEYFTNYIV 641
YFV WD ++IP + PM+Y PA + +Q + ED + E+ Y+
Sbjct: 959 YFVSWDPKVIPKTTEYPMNYDEEKKPAVVVSKQIQAQGYISAEDFFQENKMIEFLLEYLN 1018
Query: 642 NDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPD 701
D LG I N+H AD P A+ C++LAE S AVD+ K G EIP +L K +PD
Sbjct: 1019 FDVLGKIDNSHLAIADGSPDYAKDPKCIRLAELHSAAVDYVKHGNKVEIPNNLVTKRWPD 1078
Query: 702 FMEKPDKPTYESQNVIGKLFRAV 724
FMEK D YES +++GKL+R V
Sbjct: 1079 FMEK-DSMVYESTSILGKLYREV 1100
>gi|402218300|gb|EJT98377.1| RdRP-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 908
Score = 263 bits (673), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 195/652 (29%), Positives = 323/652 (49%), Gaps = 84/652 (12%)
Query: 123 MTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISF 182
+T + + I + D ++ VTP+ ++ GP ++ SN VLR + FLR+SF
Sbjct: 116 LTMHGQSEASPIPICDIMIRACAAIVTPTCIHLEGPYLDQSNSVLRAYPEHQHYFLRLSF 175
Query: 183 IDED-LDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRE 241
ED L + D+ +R + RI + LR G+ + R FEFLA+S S LR+
Sbjct: 176 ASEDHLPLYNDRDVD---------SRLFVGYRIGTILREGVTLAGRHFEFLAYSLSALRQ 226
Query: 242 SSAWMFAS----RYGL-TAAEIREWMGNFREIRNV-AKYAARLGQSFSSSKETLSVHMDE 295
S WM A GL TA +R+ +G+F + A+Y ARL Q+F++++ ++ + +
Sbjct: 227 HSVWMVAPFDHPVLGLMTANRVRDRLGDFSRVSKCPARYGARLAQAFTATEPSIVLKPEN 286
Query: 296 IEIIPDVKIEIGK-TKYVFSDGIGKVSAE-----FARKVASKCGLK---DNPPSAFQIRY 346
I IPD +I K K +F+DG+G +S E + R V ++ L+ D P + FQ R
Sbjct: 287 IVEIPD---KINKANKLIFTDGVGGMSLELLEGTWKRLVENRPHLRTKIDFPATVFQFRL 343
Query: 347 GGYKGVVAADPT-SSKKLSLRDSMRKYES------ELTKLDVLAWSKYQPCFLNRQLISL 399
GG KG+++ +P + +R SM K+++ E+ K ++ + +P FLNR I L
Sbjct: 344 GGNKGLLSLNPLLPGLVMQVRPSMNKFDAPDSLGLEIAK----SFERPRPFFLNRPFIML 399
Query: 400 LSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL-----ICG 454
L + G+ ++F QR AV+ ++ + ++A E G T ++ +L I G
Sbjct: 400 LESRGVHADVFLTLQRNAVKAVEDSKSSLIRASIMTETYGLG-GTFWIRLILRNIHDILG 458
Query: 455 YKPDA--------EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQ 506
+A +PFL ++ +A+ L E+R + RI +PN +++G DE L +
Sbjct: 459 LDFEAGQGLTTFYDPFLKHIIDVGKANALREIRFRARIPVPNSWTLIGVADEHDVLGKNE 518
Query: 507 VFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP--- 563
++ I G + H ++G +V K+P L PGD + + + P
Sbjct: 519 IYACIHKPGDPEPHW---------------IEGPAIVTKSPSLGPGDAQFVTGIGRPPPD 563
Query: 564 -----ALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPA 618
+ + +CVVF +G+RP P+ G DLDGD + V L P P DYT A
Sbjct: 564 CPFMLGPYPLKNCVVFSCRGVRPIPSMLGGGDLDGDEFNVVQYSSLFPQYPADPDDYTAA 623
Query: 619 QSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIA 678
+ +LD D + DV ++ +Y+ ND +G +A H + AD+ P + C QLA+ +++A
Sbjct: 624 ERAELDRDCTMNDVIDFIIDYVNNDLVGRLATEHLILADQHPDGVKYSNCHQLAQLYALA 683
Query: 679 VDFPKTGVPAEIP--PHLYVKEYPDFME------KPDKPTYESQNVIGKLFR 722
+DF KTG P + P L PD+++ K Y+SQ +G +FR
Sbjct: 684 LDFAKTGTPIDQDQIPSLLNDMKPDYLQREQQVGKQSTKFYQSQRALGHMFR 735
>gi|322712330|gb|EFZ03903.1| rna-dependent rna polymerase [Metarhizium anisopliae ARSEF 23]
Length = 1114
Score = 263 bits (672), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 201/639 (31%), Positives = 312/639 (48%), Gaps = 74/639 (11%)
Query: 139 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPR 198
G V + VTP+R+ GP++ NRVLR F D+FLR++F DED DLS
Sbjct: 302 GRALVLKALVTPTRIVLRGPDLETKNRVLRMFPGKSDHFLRVTFGDED-----GEDLSYG 356
Query: 199 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG--LTAA 256
+ D I+ L G+ + R+FEFLAFS S LR SAW + G LT
Sbjct: 357 DRTCND----DIFEHYRRILLRGLTVAGRRFEFLAFSHSSLRSHSAWFCSPFVGQSLTVQ 412
Query: 257 EIR---EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIEIGKTKY 311
+ R + +G F+ IR AK AAR+GQ+FS + LS+ I + I DVK G
Sbjct: 413 DCRSIVKSLGVFQNIRIPAKCAARIGQAFSETPIALSLSQRGIRLQYIDDVKNSAGTR-- 470
Query: 312 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLR-DSM 369
VFSDG+G +S + ++V + P+ QIR G KG+++ D K + +R +SM
Sbjct: 471 VFSDGVGTISIDALQEVWDCLPERLGRPTCIQIRIAGVKGMLSLDSQLRGKYICIRSESM 530
Query: 370 RKYESELTKLDVLA----WSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL 425
K++S+ LDVL S+ LNRQ++ +L +GI F Q +A+R ++
Sbjct: 531 MKFKSQ--DLDVLGICDVGSRPLRFTLNRQIVKILEDMGIHHNWFLAWQDKAIRNFLSVA 588
Query: 426 TDPLKAQEALELMSPGENT---NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT 482
+ + L G + ++++L G + FL ++ ++L L+ K
Sbjct: 589 SSTRHTRAFLRQYEVGTSLRLPELIEKLEENGIDYREDDFLRSVVGQAVLAELRFLKYKA 648
Query: 483 RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVV 542
RI + ++ G +DET L GQ++V A + G + + R+ +
Sbjct: 649 RIPVSKAVTLFGVMDETGFLQEGQIYVTYDVADHLGATGIEAAPAKGRA----------L 698
Query: 543 VAKNPCLHPGDVRVLKAVNVP---ALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVC 599
V ++P LHPGD++ ++ V P AL + +C+VF +G R P+ SG DLDGD+Y V
Sbjct: 699 VTRSPALHPGDIQYVEMVTPPFGHALLELRNCIVFSSQGSRDLPSMLSGGDLDGDLYSVI 758
Query: 600 WDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADRE 659
WD + IP + P +Y V+ ED+ +F +++ ND LGIIA H ++AD +
Sbjct: 759 WDPDAIPTRNLKPAEYPRISPKPNKRQVRQEDMANFFIDFMKNDVLGIIATRHQMYADLK 818
Query: 660 PRKARSEPCLQLAEKFSIAVDFPKTGVPAE---IPP---------------HLYVKEYPD 701
P C++LAE S AVD+ K+GVP E IP L++
Sbjct: 819 PAGTLDPECIRLAEMHSAAVDYSKSGVPVEAHCIPKVPQARADFLVPAPTLALHLSNDAS 878
Query: 702 FMEK-----------PDKP---TYESQNVIGKLFRAVKD 726
+ E+ P +P TY+S ++G+LFR + +
Sbjct: 879 YFERLTACISESETSPAQPGFATYQSNKILGRLFREIDE 917
>gi|409045817|gb|EKM55297.1| hypothetical protein PHACADRAFT_173398 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1215
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 215/728 (29%), Positives = 344/728 (47%), Gaps = 81/728 (11%)
Query: 54 YEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH---ALDKLYHLKECCY- 109
+ I F++ L++NG + L FY PV C+ A + L E
Sbjct: 326 WPIAFQLEALLRNGFLNTEDLLERFY-------GPVKQLCVRRPKAAAETLRAFTEAMRG 378
Query: 110 -EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLR 168
+P D + K + SR +P A+ L G H V +TP+R+ GP + SNRV+R
Sbjct: 379 RDPRESPEDIFEK-VWSREEPE--AVELSSGNFMCHHVTITPTRMLLEGPYVIQSNRVIR 435
Query: 169 HFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 228
+R D+F+RI F DED L R TD ++ + R+ L+ G + RK
Sbjct: 436 QYRGYEDHFIRIDFRDED-------RLQYRWDRDTD-GKSLLENRVGGLLKGGFSLATRK 487
Query: 229 FEFLAFSSSQLRESSAWMFASRY----GLTAAE-IREWMGNFREIRNV-AKYAARLGQSF 282
FEFLA+SSS LRE + W Y G AE IR +G+F + N +KYAAR+ Q+F
Sbjct: 488 FEFLAYSSSALREHAVWFVNPFYHQEKGWIDAEYIRSSLGDFSAVINCPSKYAARIAQAF 547
Query: 283 SSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV-ASKCGLKDNP--- 338
+++ ++ + D+ E + D +G+ Y+F+DG+G +S+E + + C +D+
Sbjct: 548 TATDPSVEITRDQWEQMDD----LGEEPYLFTDGVGTISSELGDMIWEALCSARDDSYRK 603
Query: 339 ---PSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYES---ELTKLDVL-AWSKYQPC 390
PSA+QIR+ GYKG+VA D K+ LR SM K+E E +++ A+ + C
Sbjct: 604 NIKPSAYQIRFLGYKGMVAVDGRLKGVKMRLRPSMNKFEGPAEETATIEIARAFERPNTC 663
Query: 391 FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN---TNIL 447
+LNR LI +L G+ + F + Q AV + ++ ++ S G + + +
Sbjct: 664 YLNRPLIMVLEDRGVIKQAFLELQEAAVAAIHMSSDSVMQCRQLFREHSLGGSYRLSYVW 723
Query: 448 KELLICGYKPDAE---------PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 498
+ L G + E PF ++Q + L ++ RI + ++G DE
Sbjct: 724 QLLNAVGLGMEHEENIRVVLQDPFFERLVQFAKNDVLRSIKHNARIPVLGSYLLVGVADE 783
Query: 499 T---RTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR 555
VF G Y + S + ++G V ++++P +HPGDV+
Sbjct: 784 GPAYEAEGCENVFKLEEGQIY-------ACVQKSVDEELIWIEGSVTISRSPVVHPGDVQ 836
Query: 556 VLKAVNVPA-------LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQ 608
+ A+ P ++ + VV P G R + G DLDGD+Y + W+ L+P +
Sbjct: 837 RVTAIGKPPDDGRPCFFRNLKNVVVLPSTGGRSLASMLGGGDLDGDLYSIIWESTLLPTE 896
Query: 609 QDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPC 668
P Y P +LD +IED+ ++ YI +D LG++++ H + A R C
Sbjct: 897 HQGPAKYEPVGKRELDRPSRIEDICDFIIEYIDSDVLGLLSDRHLIIAGELREGTRDAKC 956
Query: 669 LQLAEKFSIAVDFPKTGVPAEI--PPHLYVKEYPDFMEKPDKPT-----YESQNVIGKLF 721
++LAE S AVD+PK GVP +I P + PD+ + D YES +G LF
Sbjct: 957 IRLAELCSQAVDYPKNGVPVDIQNSPRWLIPYKPDWKKAEDNAPRKTDYYESDRALGDLF 1016
Query: 722 RAVKDIAP 729
R V+ + P
Sbjct: 1017 RNVQLLEP 1024
>gi|403168646|ref|XP_003328239.2| hypothetical protein PGTG_09533 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375167590|gb|EFP83820.2| hypothetical protein PGTG_09533 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1246
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 196/613 (31%), Positives = 318/613 (51%), Gaps = 64/613 (10%)
Query: 146 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI 205
V +TP+R+ GP+I SN +LR +++ +NFLR+S DE ++ R S +I
Sbjct: 437 VTITPTRLSLQGPQIEQSNSILRLYQQ-TENFLRVSLADETGHRL-------RASREVEI 488
Query: 206 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG----LTAAEIREW 261
+ R L G+++ RKFEFL +S+S L++ AW Y +TAA IR
Sbjct: 489 HHL-LRNRYRPFLTKGMILCGRKFEFLGYSNSALKDHQAWFVCPFYKGDQLVTAASIRAK 547
Query: 262 MGNFRE-IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKV 320
+G+F + IR A+Y AR+ Q+F+S++ +L++ E+ + DV+ + F+DG+G +
Sbjct: 548 LGDFSKVIRIPARYMARIAQAFTSTRRSLTLRPSEVTRMDDVE----RNGSCFTDGVGTI 603
Query: 321 SAEFARKVASKCGL----KDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYES- 374
S + +V + K + +QIR GG+KG+++ DPT K + +R SM K+++
Sbjct: 604 SKDLVDEVHRVLNVGNIRKSISSTCYQIRLGGFKGMLSLDPTLKGKVVRMRPSMDKFDAP 663
Query: 375 ELTKLDVLA-WSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 433
+ LD+ ++K +LNR LI LL LGI E+F + Q + +R+++ + P A
Sbjct: 664 DSLTLDIAGTFTKPLVAYLNRPLIKLLEDLGIPSEVFLRLQDKIIRKVENSRSSPKLAGN 723
Query: 434 ALELMSPGENTNI------LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 487
++ S G + + L ELL+ +++ F+ L +L+ + RI +
Sbjct: 724 LMQQYSMGSGSGMPSMLHKLSELLVDDRAVESD-FIEECYDLMTVQCLRDLKYRGRIPLD 782
Query: 488 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNP 547
+++G DE L ++V + ++ ++G V ++P
Sbjct: 783 KSYTLVGVADEDNFLPPDSIYVCVQTPNSAPMY----------------LEGSFAVTRSP 826
Query: 548 CLHPGDVRVLKAVN------VPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWD 601
LHPGDVRV+ AV P L +V+CV FP +G R P+ G DLDGD++ V
Sbjct: 827 SLHPGDVRVVNAVGKLDPKRAPRLSSLVNCVAFPIQGERSLPSCLGGGDLDGDLFTVIGL 886
Query: 602 DELIPPQQ--DPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADRE 659
+L+P + Y+P + +LD D I D ++F +YI +D +G+IA H AD+
Sbjct: 887 PQLVPKRSKIQRAASYSPPEMRKLDRDCTIADGADFFLDYISSDLVGMIATRHLHIADQC 946
Query: 660 PRKARSEPCLQLAEKFSIAVDFPKTGVPAEIP--PHLYVKEYPDFM------EKPDKPTY 711
P +E C++LAE S AVD+PKTGVP I P+ V+ PDFM K + Y
Sbjct: 947 PEGTLNESCIKLAELHSDAVDYPKTGVPVNIRSLPNPPVRMKPDFMCHEHDSSKEGEDYY 1006
Query: 712 ESQNVIGKLFRAV 724
ES NV+GKLFR +
Sbjct: 1007 ESPNVLGKLFREI 1019
>gi|393247829|gb|EJD55336.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1217
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 205/637 (32%), Positives = 314/637 (49%), Gaps = 75/637 (11%)
Query: 134 ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHST 193
++ D + V ++ +TP+RV GPE SNRVLR + +ID FLR++F D D H
Sbjct: 415 LAAHDSPLQVQKIIITPTRVKLSGPEPEQSNRVLRRYAENIDAFLRVTFADNDEYSYHY- 473
Query: 194 DLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----S 249
DI T + + + L+NGI I RKFEFLA+SSS L+E S W
Sbjct: 474 ------DREVDIP-TFVKSAVGIPLKNGITIAGRKFEFLAYSSSALKEHSVWFVTPFVEE 526
Query: 250 RYGL--TAAEIREWMGNF-REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEI 306
+ G TA IR+ +G+F +E A+ AR+ Q+FS++ SV ++EI + D+ +
Sbjct: 527 KTGTYHTAKTIRDSLGDFEKEKYCAARLGARMAQAFSATDP--SVEVEEILPLDDIP-KA 583
Query: 307 GKTKYVFSDGIGKVSAEFARKV---------ASKCGLKDNPPSAFQIRYGGYKGVVAAD- 356
SDG+G +S +F+ +V + G PSAFQIRY G KG+++ D
Sbjct: 584 SSGPQCMSDGVGTMSRDFSEQVWEALESRRNKGRRGKNRPAPSAFQIRYKGAKGMLSVDY 643
Query: 357 PTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEKKQ 414
+ LR SM K+E ++ +A + P +LNR LI LL LG+ ++F Q
Sbjct: 644 KLKGSVICLRPSMIKFEDLNSRELEIARAFNTPARMYLNRPLIVLLEGLGVKPDVFMNLQ 703
Query: 415 REAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQT---FR 471
+ A+ + A LE G + D +S +L FR
Sbjct: 704 QAALEDIHKAAGSLDTAARMLESHGLGAAFRLPSLFTSLHKLRDKHSAISELLAEDDFFR 763
Query: 472 ASKLL---------ELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGE 522
++L EL+ K RI +P+ +++G +D L G++F +
Sbjct: 764 --RVLDFAINHIRRELKYKARIPVPDSWTLVGVVDVHDYLKEGEIFAAVK---------- 811
Query: 523 SSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA-----LHH-MVDCVVFPQ 576
+++ F +QG +++ ++P +HPGDV+V++A+ P +H + +CVVF
Sbjct: 812 -----PRDAKKPFYLQGPMLITRSPVIHPGDVQVVRAIGRPPPGSPFVHEELPNCVVFSI 866
Query: 577 KGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYF 636
KG R + G D DGDIY +C EL P PP +Y P Q LD IED+ ++
Sbjct: 867 KGKRSLASCLGGGDYDGDIYNICPLTELHPKSCHPPAEYAPGQRKILDRPCGIEDIADFV 926
Query: 637 TNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPA---EIP-P 692
T YI +D LG I+ + AD R C +LA+ S AVD+PKTG+P +IP P
Sbjct: 927 TEYINSDLLGHISVNWLLIADASERGIFHPDCFKLAQLHSDAVDYPKTGMPVPHKDIPQP 986
Query: 693 HLYVKEYPDF----MEKPDKPTYESQNVIGKLFRAVK 725
V+ PD+ +++ DK Y SQ +G+LFRA++
Sbjct: 987 KQGVR--PDWQASELKEHDKDHYVSQRALGQLFRAIE 1021
>gi|403414238|emb|CCM00938.1| predicted protein [Fibroporia radiculosa]
Length = 1215
Score = 258 bits (660), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 195/618 (31%), Positives = 308/618 (49%), Gaps = 63/618 (10%)
Query: 146 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI 205
V VTP+ +Y GP SNR++R + + D+FLR+SF++E+ L R D
Sbjct: 420 VVVTPTTMYLEGPFPERSNRIMRMYMANQDSFLRVSFVEEN-------RLMYRFDRELD- 471
Query: 206 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF-----ASRYGLTAAEIRE 260
R + R+ L NG+ I R F+FLA+S S L+E + W R + AA I
Sbjct: 472 ARDFVNRRVKHLLLNGLTIAGRHFDFLAYSQSALKEHAVWFVKPFNHTDRRQIDAATIIS 531
Query: 261 WMGNF-------REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 313
+G+F R I A+YAAR+ Q+F+++ ++SV +E+ IPD I Y F
Sbjct: 532 GLGSFHDLAFDERLIYCPARYAARISQAFTATDSSVSVEAEEVVPIPD--IWDATHTYSF 589
Query: 314 SDGIGKVSAEFARKVASKCGLKD------NPPSAFQIRYGGYKGVVAADPTSSKKL-SLR 366
+DG+G +S + A+ + + K P A+Q+R+ G KG+++ D +L LR
Sbjct: 590 TDGVGTISPDLAQAIWDELRAKQKRSRHRTKPRAYQVRFMGSKGMLSVDYRLENRLVCLR 649
Query: 367 DSMRKYESELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEKKQREAVRQL-DA 423
+SM K+++ + +A + +P +LNR LI LL LG+ F+ Q AV+ D+
Sbjct: 650 ESMIKFDAPNSLFIEIARAFDKPGRYYLNRPLIMLLEGLGVPYSTFQALQDAAVQNAQDS 709
Query: 424 I--LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLL-ELRT 480
+ L+ + EA L + T+ + L G P E + F + +L EL+
Sbjct: 710 VESLSSSARLLEAHGLGTSFRLTSTMLSLHRLGLGPLHEDIFWQQMMDFAVNHVLRELKH 769
Query: 481 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL 540
RI +P+G +++G D LN G++F + H + S ++G
Sbjct: 770 HARIPVPDGWTLVGVADVHGFLNEGEIFACV--------HPQDSSVP-------IYLEGP 814
Query: 541 VVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFPQKGMRPHPNECSGSDLDGD 594
+++++P +HPGDV+V+ A+ P + + VVF KG RP P+ G DLDGD
Sbjct: 815 TLISRSPTIHPGDVQVVHAIGPPPPGSPFEKEPLPNTVVFSIKGGRPLPSYLGGGDLDGD 874
Query: 595 IYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTV 654
+Y + + P + PP Y PA +DH + DV E+ YI++D+LGIIA +
Sbjct: 875 VYNLTTMPSMRPRRTYPPARYDPAPKKFVDHPSTMADVAEFVAEYIISDTLGIIAINWLI 934
Query: 655 FADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIP--PHLYVKEYPDF-----MEKPD 707
AD+ CL+LA+ S AVD+PK+G+P + P L K PD+ + K
Sbjct: 935 TADQSGLGIFDPDCLKLAQLHSDAVDYPKSGIPVALDQIPRLKRKSKPDWNAPETITKES 994
Query: 708 KPTYESQNVIGKLFRAVK 725
YES IG LFRA++
Sbjct: 995 TNWYESTRAIGHLFRAIE 1012
>gi|426201566|gb|EKV51489.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1198
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 234/781 (29%), Positives = 370/781 (47%), Gaps = 134/781 (17%)
Query: 137 DDGLVYVH-RVQVTPSRVYFCGPEINVSNRVLRHF-RRDIDNFLRISFIDEDLDKIHSTD 194
+DG Y V +TP+ + GP SNRVLR + ++ ++FLR++F D++ ++ D
Sbjct: 386 EDGSYYQSLHVIITPTTMSLQGPYPEQSNRVLRRYDSKNHESFLRVTFRDDNYLQLR-FD 444
Query: 195 LSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----SR 250
G S I R+ L+ G+ I R F FLA+S S L+E S W +
Sbjct: 445 RDVDGPSF-------IRDRVGRFLKQGLSIAGRTFTFLAYSQSALKEHSVWFVKKFHNAP 497
Query: 251 YG-LTAAEIREWMGNFREIRN-------VAKYAARLGQSFSSSKETLSVHMDEIEIIPDV 302
YG + A I + +G F + A+YAAR+ Q+F+++ + V ++E+ + D+
Sbjct: 498 YGDVDAKTIIDSLGTFDNLSYDPTLKLCPARYAARISQAFTATDAAV-VSVEEVLNLDDI 556
Query: 303 KIEIGKTKYVFSDGIGKVSAEFARKV-------ASKCGLKDNPPSAFQIRYGGYKGVVAA 355
K GK YVF+DG+G +S + AR + K G + P A+Q+R+ G KG+++
Sbjct: 557 KTSDGK--YVFTDGVGTMSQDLARAIWGKLRSAKRKSGRSSDYPHAYQVRFLGSKGMLSI 614
Query: 356 DPT--SSKKLSLRDSMRKYESELTKLD-----VLAWSKYQPCFLNRQLISLLSTLGIWDE 408
D T + ++LR SM K+E+E + A+ + +LNR LI+LL LGI
Sbjct: 615 DHTLNGAHTIALRPSMTKFEAESGSGEQEIEIARAFDRPTAYYLNRPLITLLEGLGIPTN 674
Query: 409 IFEKKQREAVRQLDAILTDPLKAQEALELMS-------PGENTNILKELLICGYKPDAEP 461
+F K Q +AV++ + KA LE P T++ K L G D +P
Sbjct: 675 VFLKFQNDAVQETRSATLTLSKAARLLETHGLGASFRLPATMTSLAK--LGLGSIHD-DP 731
Query: 462 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG 521
F +LQ L +L+ RI IP+ +++G D L G+VF +
Sbjct: 732 FYGKLLQIAVHHVLRDLKHHARIPIPDAWTLVGVADVHSYLEEGEVFACVK--------- 782
Query: 522 ESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFP 575
++R ++GL++++++P +HPGDV+++KA+ VP A + + VVF
Sbjct: 783 -------HQTRGIIFLEGLLLISRSPTIHPGDVQIVKAIGVPPEGSCFAREPLHNTVVFS 835
Query: 576 QKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP----------PMDYTPAQSMQLDH 625
KG RP P+ G DLDGDIY V +P ++ P P +Y P Q LD
Sbjct: 836 VKGRRPLPSCLGGGDLDGDIYNV------LPLKEHPDFMPKRATYEPAEYAPTQRKLLDQ 889
Query: 626 DVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTG 685
++DV ++ YI++D +GIIA + AD+ P E CL+LA+ S AVD+PK+G
Sbjct: 890 PSTMDDVADFVMEYIISDVVGIIAINWLIIADQSPAGIEDEDCLRLAQLHSDAVDYPKSG 949
Query: 686 --VPAEIPPHLYVKEYPDFME----KPDKPT-YESQNVIGKLFRAVK-DIAPHT------ 731
V E+ P L PD+ PD Y+S+ +G LFR VK D P T
Sbjct: 950 RAVNPELIPKLKFPMKPDWNAPETINPDSANYYQSRKAVGVLFREVKLDEIPTTGRLRRR 1009
Query: 732 -----SCIRLFTKEV-ARRSYDPDMEV-DGFEDHIDDAIYHKGNYDYK----LGNLM--- 777
+ T ++ A R +DP+ V D E + + +G +D + L
Sbjct: 1010 RQRQSGRVETLTGDLSAFRLHDPESSVFDLVEKRVKRFLDTEGPWDSSAISDVARLFKRF 1069
Query: 778 --DYYGIKT------------EAEILTGSIMKMSKSFTKRRDA-----EAIGMAVRALRK 818
++ GI T E E+L G+I + + R++ EA V+A+R
Sbjct: 1070 SNEFKGIATNHSLSHRNIMLSEEEVLVGTITQKTSQPRARKEKMTKVREATDTLVKAVRV 1129
Query: 819 E 819
E
Sbjct: 1130 E 1130
>gi|389746474|gb|EIM87654.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 976
Score = 256 bits (653), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 209/611 (34%), Positives = 292/611 (47%), Gaps = 61/611 (9%)
Query: 148 VTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITR 207
+TP+ GP + SN VLR F D F+R+SF DE+ + P G+S ++ R
Sbjct: 185 LTPTSKILEGPLPDQSNSVLRRFGHH-DCFIRVSFQDENHTPLRR---DPSGTSIQELLR 240
Query: 208 TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTAAEIREWM 262
TR S + GI + R FEFL +S S LRE S F S G +TA IR +
Sbjct: 241 TRYK----SAMVKGIPLAGRHFEFLGYSMSGLREHSIIFMQAFESDDGSLMTADRIRSLL 296
Query: 263 GNFREIRNV-AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 321
GNF I N A AAR Q+FS+S ++++ EI+ I D + G +F+DG G +S
Sbjct: 297 GNFSHISNKPALLAARWAQAFSASDPSVTLQSAEIQRIGDKRSPSGS---LFTDGCGTIS 353
Query: 322 AEFARKV-------ASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYE 373
AR V + PS FQIR GG KG++ DP K + LR S K+E
Sbjct: 354 ESLARDVWKFLQRHRRRAASMRLVPSCFQIRIGGAKGILFQDPNLIGKMVCLRPSQTKFE 413
Query: 374 --SELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 429
SE LD+ A + +P FLNR LI LL LG+ ++F Q++A ++ L
Sbjct: 414 NDSEALTLDI-ASTSSRPIRMFLNRSLILLLEFLGVKPDVFMALQKDATDAVERARHSFL 472
Query: 430 KAQEALELMSPGENTNI--LKELLICGYKPDAEPFLSMMLQTFRAS-------KLLELRT 480
+A + G + I L L+ K D + Q S L E++
Sbjct: 473 EAAKLFSHHGFGSSFRIASLFNNLVTQLKLDEGDLQGLECQILTKSIEYAATHVLREIKF 532
Query: 481 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL 540
+ RI + +++G DE L G++F + R H +S+ +QG
Sbjct: 533 RARIPVHGSWTLLGVSDEWGCLREGEIFATV-----RDEHSGTSVE----------IQGP 577
Query: 541 VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCW 600
+++ ++P +HPGDV+++ AV P L H+ + VVF +G R P+ G DLDGDIY +
Sbjct: 578 MLITRSPQIHPGDVQMVTAVRRPELAHLTNVVVFSCEGERSLPSMLGGGDLDGDIYNLIL 637
Query: 601 DDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREP 660
D +L P Y LD D I+DV ++ NYI D +G IA H AD P
Sbjct: 638 DPDLFPTHTCEAGGYVGLPHKVLDRDCTIDDVADFVINYIEADLVGYIAILHLRIADLSP 697
Query: 661 RKARSEPCLQLAEKFSIAVDFPKTGVPAEIP--PHLYVKEYPDFM--EKPDKPT---YES 713
S+ CL LAEK S AVDFPKTG P P PDF+ E D + Y S
Sbjct: 698 EGPNSKDCLLLAEKASHAVDFPKTGTPTNFDDLPRAPRGPKPDFLGSETVDPSSSSFYPS 757
Query: 714 QNVIGKLFRAV 724
V+G+LFR V
Sbjct: 758 NKVLGRLFRNV 768
>gi|409083384|gb|EKM83741.1| hypothetical protein AGABI1DRAFT_66661 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1198
Score = 255 bits (652), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 233/783 (29%), Positives = 369/783 (47%), Gaps = 138/783 (17%)
Query: 137 DDGLVYVH-RVQVTPSRVYFCGPEINVSNRVLRHF-RRDIDNFLRISFIDEDLDKIHSTD 194
+DG Y V +TP+ + GP SNRVLR + ++ ++FLR++F D++ ++ D
Sbjct: 386 EDGSYYQSLHVIITPTTMSLQGPYPEQSNRVLRRYDSKNHESFLRVTFRDDNYLQLR-FD 444
Query: 195 LSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----SR 250
G S I R+ L+ G+ I R F FLA+S S L+E S W +
Sbjct: 445 RDVDGPSF-------IRDRVGRFLKQGLSIAGRTFTFLAYSQSALKEHSVWFVKKFHNAP 497
Query: 251 YG-LTAAEIREWMGNFREIRN-------VAKYAARLGQSFSSSKETLSVHMDEIEIIPDV 302
YG + A I + +G F + A+YAAR+ Q+F+++ + V ++E+ + D+
Sbjct: 498 YGDVDAKTIIDSLGTFDNLSYDPTLKLCPARYAARISQAFTATDAAV-VSVEEVLNLDDI 556
Query: 303 KIEIGKTKYVFSDGIGKVSAEFARKV-------ASKCGLKDNPPSAFQIRYGGYKGVVAA 355
K GK YVF+DG+G +S + AR + K G + P A+Q+R+ G KG+++
Sbjct: 557 KTSDGK--YVFTDGVGTMSQDLARAIWGKLRSAKRKSGRSSDYPHAYQVRFLGSKGMLSI 614
Query: 356 DPT--SSKKLSLRDSMRKYESELTKLD-----VLAWSKYQPCFLNRQLISLLSTLGIWDE 408
D T + ++LR SM K+E+E + A+ + +LNR LI+LL LGI
Sbjct: 615 DHTLNGAHTIALRPSMTKFEAESGSGEQEIEIARAFDRPTAYYLNRPLITLLEGLGIPTN 674
Query: 409 IFEKKQREAVRQLDAILTDPLKAQEALELMS-------PGENTNILKELLICGYKPDAEP 461
+F K Q +AV++ + KA LE P T++ K L G D +P
Sbjct: 675 VFLKFQNDAVQETRSATLTLSKAARLLETHGLGASFRLPATMTSLAK--LGLGSIHD-DP 731
Query: 462 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG 521
F +LQ L +L+ RI +P+ +++G D L G+VF +
Sbjct: 732 FYGKLLQIAVHHVLRDLKHHARIPVPDAWTLVGVADVHSYLEEGEVFACVK--------- 782
Query: 522 ESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFP 575
++R ++GL++++++P +HPGDV+++KA+ VP A + + VVF
Sbjct: 783 -------HQTRGIIFLEGLLLISRSPTIHPGDVQIVKAIGVPPEGSCFAREPLHNTVVFS 835
Query: 576 QKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP----------PMDYTPAQSMQLDH 625
KG RP P+ G DLDGDIY V +P ++ P P +Y P Q LD
Sbjct: 836 VKGRRPLPSCLGGGDLDGDIYNV------LPLKEHPDFMPRRATYKPAEYAPTQRKLLDQ 889
Query: 626 DVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTG 685
++DV ++ YI++D +GIIA + AD+ P E CL+LA+ S AVD+PK+G
Sbjct: 890 PSTMDDVADFVMEYIISDVVGIIAINWLIIADQSPAGIEDEDCLRLAQLHSDAVDYPKSG 949
Query: 686 --VPAEIPPHLYVKEYPDFME----KPDKPT-YESQNVIGKLFRAVK-DIAPHT------ 731
V E P L PD+ PD Y+S+ +G LFR VK D P T
Sbjct: 950 RAVNPESIPKLKFPMKPDWNAPETINPDSANYYQSRKAVGVLFREVKLDEIPTTGRLRRR 1009
Query: 732 -----SCIRLFTKEV-ARRSYDPDMEV-DGFEDHIDDAIYHKGNYDY-----------KL 773
+ T ++ A R +DP+ V D E + + +G +D +
Sbjct: 1010 RQRQSGRVETLTGDLSAFRLHDPESSVFDLVEKRVKRFLDTEGPWDSSAISDVARLFKRF 1069
Query: 774 GNLMDYYGIKT------------EAEILTGSIMKMSKSFTKRRDA-----EAIGMAVRAL 816
N ++ GI T E E+L G+I + + R++ EA V+A+
Sbjct: 1070 AN--EFKGIATNHSLSHRNIMLSEEEVLVGTITQKTSQPRARKEKMTKVREATDTLVKAV 1127
Query: 817 RKE 819
R E
Sbjct: 1128 RVE 1130
>gi|426197730|gb|EKV47657.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1151
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 207/664 (31%), Positives = 335/664 (50%), Gaps = 76/664 (11%)
Query: 115 LTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF-RRD 173
L + K + +SP + +D+ L VTP+ + GP SNRV+R + +R+
Sbjct: 347 LLKTFSKRVMKLGNSTSPLL-VDEALCQTFHAMVTPTTILLTGPFPERSNRVIRRYGKRN 405
Query: 174 IDNFLRISFIDED-LDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFL 232
DNFLR+ F +ED L D++ R S + RI L+ I+I R F+FL
Sbjct: 406 EDNFLRVEFREEDGLQYRLDRDVNGRAS---------LRHRISPILKEKIVIAGRSFDFL 456
Query: 233 AFSSSQLRESSAWM----FASRYG-LTAAEIREWMGNF------REIRNV-AKYAARLGQ 280
A+S S LRE S W S G + AA I + +G F +E+ N A+YAARL Q
Sbjct: 457 AYSQSALREHSVWFCRPFVDSDLGEVDAARIIQDLGTFDNLSYDKELINCPARYAARLSQ 516
Query: 281 SFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK----- 335
+F+++ E + ++E +I D+K +Y+F+DG G +S +FAR++ K
Sbjct: 517 AFTAT-EAATFRVEEPQIRKDIKT--NDKQYIFTDGCGCMSEDFAREIWQTMHPKGRDSE 573
Query: 336 DNPPSAFQIRYGGYKGVVAAD--PTSSKKLSLRDSMRKYES-ELTKLDVLAWSKY-QPCF 391
++ P A+QIRY G KG+++ D S+ ++R SM K+++ E +++++ K P +
Sbjct: 574 EDFPRAYQIRYAGSKGMLSVDYKLKGSRSFAVRPSMIKFDAPEAKEIEIVRGIKNPTPYY 633
Query: 392 LNRQLISLLSTLGIWDEIFEKKQREAV-RQLDAI--LTDPLKAQEALELMSPGENTNILK 448
NR LI LL LG+ ++ + Q +AV + DA L D + E L S + ++
Sbjct: 634 FNRPLIMLLEGLGVNYDVLQHFQDKAVAKTQDATRALQDAIILLENHGLGSSFRLASTMQ 693
Query: 449 ELLICGYKP-DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQV 507
++ G ++ F +L+ L +L+ RI IP+ +++G DE L ++
Sbjct: 694 NIIKLGIDALQSDAFYGRLLRVAVYHALRDLKNNARIPIPDAWTLVGVADEHNFLGKNEI 753
Query: 508 FVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP---- 563
F I + ++ ++G V+V+++PC+HPGDV+V+ A+ P
Sbjct: 754 FACIKKSDGEMIY----------------LEGHVLVSRSPCIHPGDVQVVSAIGKPPKGS 797
Query: 564 --ALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV---CWDDELIPPQQDPPMDYTPA 618
+ + + VVF KG+RP P+ G DLDGDIY + L P + P YT
Sbjct: 798 CFEVQSLQNTVVFSTKGIRPIPSCLGGGDLDGDIYNLLPLAVHKSLTPLRYFKPGKYTSG 857
Query: 619 QSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIA 678
+ LD ++DV ++ YI++D +G++AN V AD+ + CL+LA+ S A
Sbjct: 858 ERKCLDKPSTMKDVADFVMEYIISDVIGLVANRWLVIADQSQFGIQDRVCLRLAQLHSDA 917
Query: 679 VDFPKTGVP---AEIPPHLYVKEYPDFME----KPDKPT-YESQNVIGKLFRAVKDIAPH 730
VD+PKTG P AEIP + PD+ PD Y SQ+ +G+L RA+ D+ H
Sbjct: 918 VDYPKTGNPVSVAEIPKLKF--PLPDWSAPETVDPDPVNYYPSQSAVGRLSRAI-DLRQH 974
Query: 731 TSCI 734
S +
Sbjct: 975 ESSL 978
>gi|409080815|gb|EKM81175.1| hypothetical protein AGABI1DRAFT_56593 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1176
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 209/656 (31%), Positives = 332/656 (50%), Gaps = 89/656 (13%)
Query: 130 SSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF-RRDIDNFLRISFIDED-L 187
S+ + +D+ L VTP+ + GP SNRV+R + +R+ DNFLR+ F +ED L
Sbjct: 386 STSPLLVDEALCQTFHAMVTPTTILLTGPFPERSNRVIRRYGKRNEDNFLRVEFREEDGL 445
Query: 188 DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM- 246
D++ R S + RI L+ I+I R F+FLA+S S LRE S W
Sbjct: 446 QYRLDRDVNGRAS---------LRHRISPILKEKIVIAGRSFDFLAYSQSALREHSVWFC 496
Query: 247 ---FASRYG-LTAAEIREWMGNF------REIRNV-AKYAARLGQSFSSSKETLSVHMDE 295
S G + AA I + +G F +E+ N A+YAARL Q+F+++ E + ++E
Sbjct: 497 RPFVDSDLGEVDAARIIQDLGTFDNLSYDKELINCPARYAARLSQAFTAT-EAATFRVEE 555
Query: 296 IEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK-----DNPPSAFQIRYGGYK 350
+I D+K +Y+F+DG G +S +FAR++ K ++ P A+QIRY G K
Sbjct: 556 PQIRKDIKT--NDKQYIFTDGCGCMSEDFAREIWQTMHPKGRDSEEDFPRAYQIRYAGSK 613
Query: 351 GVVAAD--PTSSKKLSLRDSMRKYES-ELTKLDVLAWSKY-QPCFLNRQLISLLSTLGIW 406
G+++ D S+ +R SM K+++ E +++++ K P + NR LI LL LG+
Sbjct: 614 GMLSVDYKLKGSRTFVVRPSMIKFDAPEAKEIEIVRGIKNPTPYYFNRPLIMLLEGLGVN 673
Query: 407 DEIFEKKQREAV-RQLDAILTDPLKAQEALELMS----------PGENTNILKELLICGY 455
++ + Q +AV + DA L Q+A++L+ P NI+ +L I
Sbjct: 674 YDVLQHFQDKAVAKTQDATLA----LQDAIDLLENHGLGSSFRRPSTMQNII-QLGIDAL 728
Query: 456 KPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG 515
+ DA F +L+ L +L+ RI IP+ +++G DE L ++F I +
Sbjct: 729 QSDA--FYGRLLRVAVYHALRDLKNNARIPIPDAWTLVGVADEHNFLGKNEIFACIKKSD 786
Query: 516 YRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMV 569
++ ++G V+V+++PC+HPGDV+V+ A+ P + +
Sbjct: 787 GEMIY----------------LEGHVLVSRSPCIHPGDVQVVSAIGRPPKGSCFEVESLQ 830
Query: 570 DCVVFPQKGMRPHPNECSGSDLDGDIYFV---CWDDELIPPQQDPPMDYTPAQSMQLDHD 626
+ VVF KG RP P+ G DLDGDIY + L P + P YT + LD
Sbjct: 831 NTVVFSTKGNRPIPSCLGGGDLDGDIYNLLPLAVHKSLTPLRYFKPGKYTSGERKCLDKP 890
Query: 627 VQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGV 686
++DV ++ YI++D +G++AN V AD+ + CL+LA+ S AVD+PKTG
Sbjct: 891 STMKDVADFVMEYIISDVIGLVANRWLVIADQSQFGIQDRVCLRLAQLHSDAVDYPKTGN 950
Query: 687 P---AEIPPHLYVKEYPDFME----KPDKPT-YESQNVIGKLFRAVKDIAPHTSCI 734
P AEIP + PD+ PD Y SQ+ +G+L RA+ D+ H S +
Sbjct: 951 PVSVAEIPKLKF--PLPDWSAPETVDPDPVNYYPSQSAVGRLSRAI-DLRQHESSL 1003
>gi|240282192|gb|EER45695.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H143]
Length = 396
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 151/407 (37%), Positives = 240/407 (58%), Gaps = 32/407 (7%)
Query: 208 TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFRE 267
+ +Y R+ L++GI+IGDR +EFLAF +SQ RE A+ FAS LTAA IR MG+
Sbjct: 2 SEVYARVTRILQHGIIIGDRHYEFLAFGNSQFREHGAFFFASLPHLTAANIRAQMGDLNN 61
Query: 268 IRNVAKYAARLGQSFSSSKETLS--VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFA 325
I+ VAKYAARLGQ FS+++ S V + E++ +I + YVFSDG+G++S
Sbjct: 62 IKVVAKYAARLGQCFSTTRAVTSCPVQLKEVD-------DIERNGYVFSDGVGRLSHFLT 114
Query: 326 RKVASKCGLK---DNPPSAFQIRYGGYKGVVAADPTS-SKKLSLRDSMRKYESELTKLDV 381
+ + S G+ PPSAFQ R GG KG++A + +++ +R S K+ + L++
Sbjct: 115 QMIRSDLGINTPSGQPPSAFQFRLGGCKGILAVSSDAHGQEVHIRKSQYKFAAAHHGLEI 174
Query: 382 LAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL-MSP 440
+ S + LNRQLI +LS LG+ D++F K R + +L+ +T+ +A L+ + P
Sbjct: 175 IRHSHFSLATLNRQLILVLSCLGVPDKVFIAKLRMMMDKLEQAMTNEEQAVHLLQTHVDP 234
Query: 441 GENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETR 500
+ T IL +++ G++ EPF+S +L+ +R ++ L+ K +I I G ++GC+DET+
Sbjct: 235 NQMTLILADMVRDGFQGSKEPFVSSLLELWRTWQIKYLKEKAKIAIDEGAFLLGCIDETK 294
Query: 501 TLNYGQVFVQISGAGYRQLHGES---------SLFSSSRSRQRFIVQGLVVVAKNPCLHP 551
TL + + + S G + ES ++ S + I++G+ ++A+NP LHP
Sbjct: 295 TL---KGYFRSSRPGQDATYEESVACLPEIFVQVWRHSEGKY-VIIEGVCILARNPSLHP 350
Query: 552 GDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 598
GD+RV+KAVN P+LHH+ D VV PQ G+ E S + + G I+ V
Sbjct: 351 GDIRVVKAVNAPSLHHLRDVVVLPQLGI-----ETSQACVPGVIWMV 392
>gi|392571578|gb|EIW64750.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1224
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 199/649 (30%), Positives = 319/649 (49%), Gaps = 80/649 (12%)
Query: 128 KPSSPAISLDDGLVYVH--RVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE 185
KP + A++ D H RV +TP+ + GP SNRV+R + R D+FLR+ F DE
Sbjct: 404 KPLNTALNTADATAPFHCLRVTITPTTMILEGPFPERSNRVMRKYYRSQDSFLRVCFQDE 463
Query: 186 DLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAW 245
+ ++ R TD + R+ S L G+ +F+FLA+S S L+E + W
Sbjct: 464 NRLQLRFD----REIDGTDF----VNRRVKSVLLGGLAFPGARFDFLAYSQSALKEHAVW 515
Query: 246 MF---------ASRYGLTAAEIREWMGNFRE-------IRNVAKYAARLGQSFSSSKETL 289
+ + AA I +G FR I A+YAAR+ Q+F+++ ++
Sbjct: 516 FVKPFRHTDDQGYTHFVDAAAIIGSLGTFRNLTFDPELIYCPARYAARISQAFTATDASI 575
Query: 290 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNP---------PS 340
++ +I D+K GK + F+DG+G +S + A+ + L++N P
Sbjct: 576 TIDAGQIIFGSDIKDASGKRE--FTDGVGTISPQLAKDIWR--ALQENRRRGRRDRTYPR 631
Query: 341 AFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTK-LDVL-AWSKYQPCFLNRQLI 397
A+QIR+ G KG+++ D T + + +R SM K+ES ++ ++V A+ K P +LNR LI
Sbjct: 632 AYQIRFQGSKGMLSVDYTLPGRSILIRPSMIKFESPDSRNIEVARAFEKPAPYYLNRPLI 691
Query: 398 SLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN---TNILKELLICG 454
LL LG+ E+F++ Q AVR + A + ++ LE G + T+++ L G
Sbjct: 692 MLLEGLGVPYEVFQRLQDNAVRDVKAAVESLERSARLLEGHGLGGSFRLTSVMLGLHKLG 751
Query: 455 YKP-DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISG 513
P + E F + L EL+ + RI +P G +++G D L G++FV I
Sbjct: 752 LGPLNNEVFWRQTMDFAINHVLRELKHRARIPVPEGWTLVGVADVHGYLEEGEIFVCID- 810
Query: 514 AGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHH 567
+ R R++ +G +++++P +HPGD +V+ A+ P ++
Sbjct: 811 -------------APDRGGLRYL-EGRTLISRSPTIHPGDAQVVHAIGRPRPGSPFSMES 856
Query: 568 MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDV 627
+ + VVF KG RP P+ G DLDGD Y V EL+PP+ +Y +DH+
Sbjct: 857 LRNTVVFSIKGKRPLPSCLGGGDLDGDEYNVTSMPELLPPRTFYAAEYKATPRKLVDHES 916
Query: 628 QIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVP 687
+ DV E+ YI +D+LGIIA + AD+ CL+LA S AVD+PK+G P
Sbjct: 917 TMVDVAEFVAEYINSDTLGIIAITWLIIADQSTEGILDPDCLKLAALHSDAVDYPKSGQP 976
Query: 688 AEIP--PHLYVKEYPDFMEKPDKPT----------YESQNVIGKLFRAV 724
I P L PD+ P+ + YES IGKL+R++
Sbjct: 977 VPIQHIPRLQFARKPDW-NAPETMSIDTLSESPRFYESVRAIGKLYRSI 1024
>gi|58269288|ref|XP_571800.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
gi|58269290|ref|XP_571801.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
gi|58269292|ref|XP_571802.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
gi|57228036|gb|AAW44493.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228037|gb|AAW44494.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228038|gb|AAW44495.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1120
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 235/792 (29%), Positives = 365/792 (46%), Gaps = 96/792 (12%)
Query: 140 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 199
LV + V VTP+R+ P+ SN V R + +D +R+ F DE+ D++ D
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADNMKLI 425
Query: 200 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 259
S I R+ L+ G++IG F +A S+SQ +E + W F + + E+R
Sbjct: 426 DSIN--PAVGIMARVRRALQFGLIIGGETFYPVASSASQQKEHAMW-FINNKVIDGLELR 482
Query: 260 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 319
WMG E VAK+AAR+G FS+S+ +++ ++ E +PD++ + F+DG G
Sbjct: 483 NWMGTVHETV-VAKHAARMGLPFSTSR-IVNMKINIGEELPDIE----RNGRCFTDGCGI 536
Query: 320 VSAEFARKVA----SKCGLKDNPPSAFQIRYGGYKGVVA--ADPTSSKKLSLRDSMRKYE 373
E + A K G+ ++ PSA Q R GG KGV++ + + ++ LR SM K++
Sbjct: 537 AGREVLNQAALALNEKVGI-NSQPSAIQFRLGGAKGVLSDWSQLVNEYEIRLRPSMIKFK 595
Query: 374 SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDE----IFEKKQREAVRQLDAILTDPL 429
S+L L+V+ +KYQ FLNRQ I+++ G+ E IFE + D + + +
Sbjct: 596 SDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNAV 655
Query: 430 KA--QEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 487
Q+ + L N L +L+ G+ + P L + L +L+ + R+ +
Sbjct: 656 TENDQQLIALC----NDFPLAQLIKSGF--NENPLLLDVAAIIECRALQDLKWRARVKLL 709
Query: 488 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNP 547
+G ++G DET TL G+VF Q + S + +V ++V
Sbjct: 710 DGVYLIGIADETGTLKEGEVFCQFQ--------------ENDESPPKIVVNEVLVCRAPA 755
Query: 548 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 607
C DVR AV+ P L H+ + +VF +GMR P+ G DLDGD Y + WD +
Sbjct: 756 C----DVRRAWAVDNPELRHLKNVIVFSTQGMRDMPSMLGGGDLDGDDYTLIWDQRFVQS 811
Query: 608 QQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADR----EPRK 662
+ PMDY + + H Q + + E F YI+ND LG + N H +D +PR
Sbjct: 812 LKVYDPMDYEAPDPISVKHVTQ-KHLNENFVQYILNDVLGQVDNCHLALSDMYTPFDPR- 869
Query: 663 ARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPD-KPTYESQNVIGKLF 721
CL L+E S AVDF KTG A + P L KE+PDFM+K D K YES ++GK+F
Sbjct: 870 -----CLHLSEIHSTAVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVYESTGILGKIF 924
Query: 722 RAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDH---IDDAIYHKGNYDYKLGNLMD 778
R V+ A H S ++ + Y D + F H +D K +Y+ L M
Sbjct: 925 RIVQADA-HFS-----PSDLEQMGYPTDPRITRFPLHESLLDRLKPLKASYERDLQYDMR 978
Query: 779 YYGIKTEAEILTGSIMKMSKSFTKRRDA-------EAIGMAVRALRKEARAWFKEKSGSD 831
Y + E EI +G ++ +K + RD EA + V +R+ A+ +
Sbjct: 979 RYRV-YEPEIPSGIAIR-NKRRKRVRDQNLNEPLREAYNLLVNNVRETAQKIVNDFEFKT 1036
Query: 832 TEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHF------------------LSFPWCVY 873
T A Y +TY + + Q + F +SF WC
Sbjct: 1037 TLTPMQVVARHCYALTYEEVHVRQWEQALAEGKFGEKPEDDEDSERLRPKPLISFAWCFC 1096
Query: 874 DRLVEIKKDKTS 885
LV+I S
Sbjct: 1097 QELVQIVSQSAS 1108
>gi|405121923|gb|AFR96691.1| hypothetical protein CNAG_03466 [Cryptococcus neoformans var. grubii
H99]
Length = 1120
Score = 253 bits (646), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 234/786 (29%), Positives = 362/786 (46%), Gaps = 96/786 (12%)
Query: 140 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 199
LV + V VTP+R+ P+ SN V R + +D +R+ F DE+ D++ D
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADYMKLV 425
Query: 200 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 259
S I R+ L+ G++IG F +A S+SQ +E + W F + + E+R
Sbjct: 426 DSIN--PAVGIMARVRRALQFGLVIGGETFYPVASSASQQKEHAMW-FINNKVIDGLELR 482
Query: 260 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 319
WMG E VAK+AAR+G FS+S+ +++ ++ E +PD++ + F+DG G
Sbjct: 483 NWMGTVHET-VVAKHAARMGLPFSTSR-IVNMKINIGEELPDIE----RNGRCFTDGCGI 536
Query: 320 VSAEFARKVA----SKCGLKDNPPSAFQIRYGGYKGVVA--ADPTSSKKLSLRDSMRKYE 373
E + A K G+ P SA Q R GG KGV++ + S ++ LR SM K+
Sbjct: 537 AGREVLNQAALALNEKVGINAQP-SAIQFRLGGAKGVLSDWSQLVSEYEIRLRPSMIKFR 595
Query: 374 SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDE----IFEKKQREAVRQLDAILTDPL 429
S+L L+V+ +KYQ FLNRQ I+++ G+ E IFE + D + + +
Sbjct: 596 SDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNAV 655
Query: 430 KA--QEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 487
Q+ + L N L +L+ G+ + P L + L +L+ + R+ +
Sbjct: 656 TENDQQLIALC----NDFPLAQLIRSGF--NENPLLLDVAAIIECRALQDLKWRARVKLS 709
Query: 488 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNP 547
+G ++G DET TL G+VF Q + S + +V ++V
Sbjct: 710 DGVYLIGIADETGTLKEGEVFCQFQ--------------ENDDSPPKVVVNEVLVCRAPA 755
Query: 548 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 607
C DVR AV+ P L H+ + +VF +GMR P+ G DLDGD Y + WD +
Sbjct: 756 C----DVRRAWAVDRPELRHLKNVIVFSTQGMRDMPSMLGGGDLDGDDYTLIWDQRFVQS 811
Query: 608 QQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADR----EPRK 662
+ PMDY + + H Q + + E F Y++ND LG + N H +D +PR
Sbjct: 812 LKVYDPMDYEAPDPISVKHVTQ-KHLNENFVQYVLNDVLGQVDNCHLALSDMYTPFDPR- 869
Query: 663 ARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPD-KPTYESQNVIGKLF 721
CL L+E S AVDF KTG A + P L KE+PDFM+K D K YES+ ++GK+F
Sbjct: 870 -----CLHLSEIHSTAVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVYESKGILGKIF 924
Query: 722 RAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDH---IDDAIYHKGNYDYKLGNLMD 778
R V+ A H S ++ + Y D + F H +D K +Y+ L M
Sbjct: 925 RIVQADA-HFS-----PSDLEQMGYPTDPRITRFPLHESLLDRLKPLKASYERDLQYDMR 978
Query: 779 YYGIKTEAEILTGSIMKMSKSFTKRRDA-------EAIGMAVRALRKEARAWFKEKSGSD 831
Y + E EI +G ++ +K + RD EA + V +R+ A+ +
Sbjct: 979 RYRV-YEPEIPSGIAIR-NKRRKRVRDQNLNEPLREAYNILVNNVRETAQKIVNDFEFKT 1036
Query: 832 TEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHF------------------LSFPWCVY 873
T A Y +TY + + Q + F +SF WC
Sbjct: 1037 TLTPMQVVARHCYALTYEEVHVRQWEQALAEGKFGEKPEDDEDSERLRPKPLISFAWCFC 1096
Query: 874 DRLVEI 879
LV+I
Sbjct: 1097 QELVQI 1102
>gi|169844306|ref|XP_001828874.1| RNA-directed RNA polymerase 2 [Coprinopsis cinerea okayama7#130]
gi|116509986|gb|EAU92881.1| RNA-directed RNA polymerase 2 [Coprinopsis cinerea okayama7#130]
Length = 1232
Score = 253 bits (646), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 242/822 (29%), Positives = 369/822 (44%), Gaps = 150/822 (18%)
Query: 130 SSPAISLDDGLVY-VHRVQVTPSRVYFCGPEINVSNRVLRHFR-RDIDNFLRISFIDEDL 187
++P + DG +Y V +TP+++ GP SNRV+R + R ++FLR++F DE
Sbjct: 409 TTPTLEPTDGSLYQAQHVTITPTKILLEGPFPERSNRVIRAYEPRHQESFLRVTFADEGR 468
Query: 188 DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF 247
+ S D R R R +L NG+ I R F FLA+S S L+E S W
Sbjct: 469 LQYRSND---RELDHEAFVRERFGEFLL----NGLTIAKRHFRFLAYSQSALKEHSVWFV 521
Query: 248 A----SRYGLTAAE-IREWMGNF-------REIRNVAKYAARLGQSFSSSKETLSVHMDE 295
+++GL AE I +GNF + + A+YAARL Q+F+++ + ++
Sbjct: 522 KPFVDTKHGLVNAESIIHSLGNFDGLDFDSQLMHCPARYAARLSQAFTATDACI---IEV 578
Query: 296 IEIIPDVKIEIGK---TKYVFSDGIGKVSAEFARKV-------ASKCGLKDNPPSAFQIR 345
EII IE+ KY F+DG+G +S E AR++ + P+A+Q+R
Sbjct: 579 EEIINGRDIEVVSPEGQKYCFTDGVGTLSPELAREIWKHLKRTKRRARSVKGHPAAYQVR 638
Query: 346 YGGYKGVVAAD-PTSSKKLSLRDSMRKYESELTKLDVLAWS--KYQPCFLNRQLISLLST 402
+ G KG+++ D + LR SM K+E+ ++ +A S + P FLNR LI+LL
Sbjct: 639 FMGSKGMLSVDYRLQGSTIYLRPSMIKFEAPNSRAIEIARSFDRPTPYFLNRPLITLLEG 698
Query: 403 LGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN------TNILKELLICGYK 456
LG+ F+ Q AVR+ + A L+ G + N L +L I
Sbjct: 699 LGVPLSTFKFFQDRAVRETQQAASSLATAAAMLDTYGLGASFRLPSVMNSLNKLGIPVLN 758
Query: 457 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGY 516
D FLS ++ L L+ RI +P +++G D R L Q+F +
Sbjct: 759 QDR--FLSRAMEYAINHILRLLKNHARIPVPGAWTLVGVADVHRFLQPRQIFAYVKPLNS 816
Query: 517 RQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVD 570
R ++ ++G V+++++P +HPGDV++++A+ P A + +
Sbjct: 817 RGIY----------------LEGPVLISRSPTIHPGDVQLVQAIGHPPPDSPFAHEPLAN 860
Query: 571 CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIP---PQQ------------DPPMDY 615
VVF G RP P+ G DLDGDIY LIP PQ+ P Y
Sbjct: 861 TVVFSVLGDRPLPSCLGGGDLDGDIY------NLIPLEDPQRPELRGFTPVRPLQAPSQY 914
Query: 616 TPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKF 675
PAQ LD + DV E+ YI++D LGIIA + AD+ PR CL+LA+
Sbjct: 915 APAQRKILDRKATMRDVAEFVMEYILSDVLGIIAINWLIIADQSPRGIYDSDCLKLADLH 974
Query: 676 SIAVDFPKTGVPAEIP--PHLYVKEYPDFMEKPDKPT------YESQNVIGKLFRAV--- 724
S AVD+PKTG P + P L + PD+ T Y S IGKLFRA+
Sbjct: 975 SDAVDYPKTGNPVALTNIPRLKYRTKPDWNAPETVDTSASGNYYTSSKAIGKLFRAIELP 1034
Query: 725 ----------------------KDIAPHTSCIRLFTKE-----VARRSYDPDMEVDGFED 757
++ H+S I + ++E + RR + + F
Sbjct: 1035 VEMESTQGGTRVQSHRSRRRQGRNANTHSSAIPMLSREPYFSIIERRVGEFIATEEPFRT 1094
Query: 758 HID---DAIYHKGNYDYKLGNLMDYYGIKT-------EAEILTGSIMKMSKSFTKRRDA- 806
ID + IY K + +L + + + T E E L G+I + + KR+D
Sbjct: 1095 GIDEETEGIYAK--FTSELEGICWSHTLSTARDACLKEEEALIGTITQKTSQPRKRKDLI 1152
Query: 807 ----EAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWY 844
E + VR R+ E S SDTE+D + AW+
Sbjct: 1153 ARLREKTDILVRGTREAL-----EGSESDTEEDYLQR--AWF 1187
>gi|210148496|gb|ACJ09171.1| RNA-dependent RNA polymerase [Cryptococcus neoformans var. grubii]
Length = 1120
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 232/786 (29%), Positives = 364/786 (46%), Gaps = 96/786 (12%)
Query: 140 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 199
LV + V VTP+R+ P+ SN V R + +D +R+ F DE+ D++ D
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADYMKLV 425
Query: 200 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 259
S I R+ L+ G++IG F +A S+SQ +E + W F + + E+R
Sbjct: 426 DSIN--PAVGIMARVRRALQFGLVIGGETFYPVASSASQQKEHAMW-FINNKVIDGLELR 482
Query: 260 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 319
WMG E VAK+AAR+G FS+S+ +++ ++ E +PD++ + F+DG G
Sbjct: 483 NWMGTVHET-VVAKHAARMGLPFSTSR-IVNMKINIGEELPDIE----RNGRCFTDGCGI 536
Query: 320 VSAEFARKVA----SKCGLKDNPPSAFQIRYGGYKGVVA--ADPTSSKKLSLRDSMRKYE 373
E + A K G+ P SA Q R GG KGV++ + S ++ LR SM K+
Sbjct: 537 AGREVLNQAALALNEKVGINAQP-SAIQFRLGGAKGVLSDWSQLVSEYEIRLRPSMIKFR 595
Query: 374 SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL----DAILTDPL 429
S+L L+V+ +KYQ FLNRQ I+++ G+ E+ +A+ + D + + +
Sbjct: 596 SDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNAV 655
Query: 430 KA--QEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 487
Q+ + L N L +L+ G+ + P L + L +L+ + R+ +
Sbjct: 656 TENDQQLIALC----NDFPLAQLIRSGF--NENPLLLDVAAIIECRALQDLKWRARVKLS 709
Query: 488 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNP 547
+G ++G DET TL G+VF Q F + +V V+V + P
Sbjct: 710 DGVYLIGIADETGTLKEGEVFCQ---------------FQENDDSPPKVVVNEVLVCRAP 754
Query: 548 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 607
DVR AV+ P L H+ + +VF +GMR P+ G DLDGD Y + WD +
Sbjct: 755 AC---DVRRAWAVDRPELRHLKNVIVFSTQGMRDMPSMLGGGDLDGDDYTLIWDQRFVQS 811
Query: 608 QQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADR----EPRK 662
+ PMDY + + H Q + + E F Y++ND LG + N H +D +PR
Sbjct: 812 LKVYDPMDYEAPDPISVKHVTQ-KHLNENFVQYVLNDVLGQVDNCHLALSDMYTPFDPR- 869
Query: 663 ARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPD-KPTYESQNVIGKLF 721
CL L+E S++VDF KTG A + P L KE+PDFM+K D K YES+ ++GK+F
Sbjct: 870 -----CLHLSEIHSVSVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVYESKGILGKIF 924
Query: 722 RAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDH---IDDAIYHKGNYDYKLGNLMD 778
R V+ A H S ++ + Y D + F H +D K +Y+ L M
Sbjct: 925 RIVQADA-HFS-----PSDLEQMGYPTDPRITRFPLHESLLDRLKPLKASYERDLQYDMR 978
Query: 779 YYGIKTEAEILTGSIMKMSKSFTKRRDA-------EAIGMAVRALRKEARAWFKEKSGSD 831
Y + E EI +G ++ +K + RD EA + V +R+ A+ +
Sbjct: 979 RYRV-YEPEIPSGIAIR-NKRRKRVRDQNLNEPLREAYNILVNNVRETAQKIVNDFEFKT 1036
Query: 832 TEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHF------------------LSFPWCVY 873
T A Y +TY + + Q + F +SF WC
Sbjct: 1037 TLTPMQVVARHCYALTYEEVHVRQWEQALAEGKFGEKPEDDEDSERLRPKPLISFAWCFC 1096
Query: 874 DRLVEI 879
LV+I
Sbjct: 1097 QELVQI 1102
>gi|209978362|gb|ACJ04634.1| RNA-dependent RNA polymerase [Cryptococcus neoformans var. grubii]
Length = 1120
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 233/786 (29%), Positives = 363/786 (46%), Gaps = 96/786 (12%)
Query: 140 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 199
LV + V VTP+R+ P+ SN V R + +D +R+ F DE+ D++ D
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADYMKLV 425
Query: 200 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 259
S I R+ L+ G++IG F +A S+SQ +E + W F + + E+R
Sbjct: 426 DSIN--PAVGIMARVRRALQFGLVIGGETFYPVASSASQQKEHAMW-FINNKVIDGLELR 482
Query: 260 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 319
WMG E VAK+AAR+G FS+S+ +++ ++ E +PD++ + F+DG G
Sbjct: 483 NWMGTVHET-VVAKHAARMGLPFSTSR-IVNMKINIGEELPDIE----RNGRCFTDGCGI 536
Query: 320 VSAEFARKVA----SKCGLKDNPPSAFQIRYGGYKGVVA--ADPTSSKKLSLRDSMRKYE 373
E + A K G+ P SA Q R GG KGV++ + S ++ LR SM K+
Sbjct: 537 AGREVLNQAALALNEKVGINAQP-SAIQFRLGGAKGVLSDWSQLVSEYEIRLRPSMIKFR 595
Query: 374 SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDE----IFEKKQREAVRQLDAILTDPL 429
S+L L+V+ +KYQ FLNRQ I+++ G+ E IFE + D + + +
Sbjct: 596 SDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNAV 655
Query: 430 KA--QEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 487
Q+ + L N L +L+ G+ + P L + L +L+ + R+ +
Sbjct: 656 TENDQQLIALC----NDFPLAQLIRSGF--NENPLLLDVAAIIECRALQDLKWRARVKLS 709
Query: 488 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNP 547
+G ++G DET TL G+VF Q + S + +V ++V
Sbjct: 710 DGVYLIGIADETGTLKEGEVFCQFQ--------------ENDDSPPKVVVNEVLVCRAPA 755
Query: 548 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 607
C DVR AV+ P L H+ + +VF +GMR P+ G DLDGD Y + WD +
Sbjct: 756 C----DVRRAWAVDRPELRHLKNVIVFSTQGMRDMPSMLGGGDLDGDDYTLIWDQRFVQS 811
Query: 608 QQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADR----EPRK 662
+ PMDY + + H Q + + E F Y++ND LG + N H +D +PR
Sbjct: 812 LKVYDPMDYEAPDPISVKHVTQ-KHLNENFVQYVLNDVLGQVDNCHLALSDMYTPFDPR- 869
Query: 663 ARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPD-KPTYESQNVIGKLF 721
CL L+E S++VDF KTG A + P L KE+PDFM+K D K YES+ ++GK+F
Sbjct: 870 -----CLHLSEIHSVSVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVYESKGILGKIF 924
Query: 722 RAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDH---IDDAIYHKGNYDYKLGNLMD 778
R V+ A H S ++ + Y D + F H +D K +Y+ L M
Sbjct: 925 RIVQADA-HFS-----PSDLEQMGYPTDPRITRFPLHESLLDRLKPLKASYERDLQYDMR 978
Query: 779 YYGIKTEAEILTGSIMKMSKSFTKRRDA-------EAIGMAVRALRKEARAWFKEKSGSD 831
Y + E EI +G ++ +K + RD EA + V +R+ A+ +
Sbjct: 979 RYRV-YEPEIPSGIAIR-NKRRKRVRDQNLNEPLREAYNILVNNVRETAQKIVNDFEFKT 1036
Query: 832 TEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHF------------------LSFPWCVY 873
T A Y +TY + + Q + F +SF WC
Sbjct: 1037 TLTPMQVVARHCYALTYEEVHVRQWEQALAEGKFGEKPEDDEDSERLRPKPLISFAWCFC 1096
Query: 874 DRLVEI 879
LV+I
Sbjct: 1097 QELVQI 1102
>gi|66802840|ref|XP_635263.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
gi|60463423|gb|EAL61608.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
Length = 2403
Score = 252 bits (644), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 207/761 (27%), Positives = 353/761 (46%), Gaps = 96/761 (12%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
+ V +TPSR F P + S R +R F NF+ + ++E L+ + +
Sbjct: 1208 IRDVFITPSRTIFIQPTLQRSCRAVRKFGSS--NFIMVKIVNESLEPLQGVN-------- 1257
Query: 203 TDITRTRIY-TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 261
+ ++ RI L GIL+G + + + S+SQLRE S+W +++ G +I W
Sbjct: 1258 ---NKHPLHENRIKPILEGGILVGGKIYSYAGNSNSQLREYSSWFVSNQIGTHTVKI--W 1312
Query: 262 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 321
G + NV K+ +G FS++ T+++ + I I D I + +VF++G G++
Sbjct: 1313 SG-IEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQD----ITRNTHVFTEGCGEIG 1367
Query: 322 AEFARKVASKCGLKDNPPS--AFQIRYGGYKGVV-----AADPTSSKKLSLRDSMRKYE- 373
E A+ + + PS A+Q+R GG KG++ A DP+ + +R SM K+
Sbjct: 1368 PELAKHLNENYNFR---PSTCAYQVRIGGNKGMLVVNNQAPDPSG---IYIRPSMVKFNP 1421
Query: 374 ----SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 429
E L++ + S C LNRQ+ISLLSTLG D +F Q + Q+ I+ D
Sbjct: 1422 IVCGDEHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTN 1481
Query: 430 KAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 489
+++A+ P L + +P++ +L + K+ ++ K I I +
Sbjct: 1482 ASKQAIVEFFPDITEGELYQ----------DPYIRRILISLYKLKMERIQQKCHIEIKDS 1531
Query: 490 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 549
R ++G D T +L VFVQ+ G R ++ +++GLV+V KNPC
Sbjct: 1532 RMLLGVCDPTNSLPPNTVFVQLEEEDEDDDDG--------RKYEK-VIEGLVMVIKNPCT 1582
Query: 550 HPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ 609
HPGDVR LKAV+ L H+ + +VF KG P+ E SGSDLDGD YF C+D LI +
Sbjct: 1583 HPGDVRYLKAVDNLRLRHLRNVLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRS 1642
Query: 610 DPPMDYTPAQSM-QLDHDVQIED----VEEYFTNYIVNDSLGIIANAHTVFADREPRKAR 664
Y +++ D + + + ++ + LG + N+H +D A
Sbjct: 1643 KSETAYLGDETVSNNDKKANVFNDPFALSSMYSTNVERQELGKMYNSHLAISD--LFGAN 1700
Query: 665 SEPCLQLAEKFSIAVDFPKTGVPAEIPPH----LYVKEYPDFMEKPD--KPTYESQNVIG 718
E +Q++++ +D+PKTG+ IP L K YP +M++ + + Y+S+ ++G
Sbjct: 1701 HEFSIQISKECFKEIDYPKTGIHGTIPKEANVWLKTKGYPHYMQRENSTRVYYQSKTIMG 1760
Query: 719 KLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMD 778
K++ + + I F + S D VD +E +++ A Y ++ +L+
Sbjct: 1761 KMYDQIDQLV----YIGDFLPNI---SLDKSNLVDDYEIYLNSAKILYSQYKLQVHSLLR 1813
Query: 779 YYGIKTEAEILTGSIMK--MSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTED-- 834
+Y ++E I+ G + + +S +K E ++ + + KE E+
Sbjct: 1814 HYSAESEESIMIGFLDQGFISDKVSKDIKGEMKNDYIKIQQTFENEFLKEFGEQHKENCL 1873
Query: 835 -----DAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPW 870
+ K SAWYHV Y + D L F W
Sbjct: 1874 LIHRVNIEKKVSAWYHVAY---------SDLKDDRALGFYW 1905
>gi|14475571|emb|CAC41975.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]
Length = 1964
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 207/761 (27%), Positives = 353/761 (46%), Gaps = 96/761 (12%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
+ V +TPSR F P + S R +R F NF+ + ++E L+ + +
Sbjct: 765 IRDVFITPSRTIFIQPTLQRSCRAVRKFGSS--NFIMVKIVNESLEPLQGVN-------- 814
Query: 203 TDITRTRIY-TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 261
+ ++ RI L GIL+G + + + S+SQLRE S+W +++ G +I W
Sbjct: 815 ---NKHPLHENRIKPILEGGILVGGKIYSYAGNSNSQLREYSSWFVSNQIGTHTVKI--W 869
Query: 262 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 321
G + NV K+ +G FS++ T+++ + I I D I + +VF++G G++
Sbjct: 870 SG-IEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQD----ITRNTHVFTEGCGEIG 924
Query: 322 AEFARKVASKCGLKDNPPS--AFQIRYGGYKGVV-----AADPTSSKKLSLRDSMRKYE- 373
E A+ + + PS A+Q+R GG KG++ A DP+ + +R SM K+
Sbjct: 925 PELAKHLNENYNFR---PSTCAYQVRIGGNKGMLVVNNQAPDPSG---IYIRPSMVKFNP 978
Query: 374 ----SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 429
E L++ + S C LNRQ+ISLLSTLG D +F Q + Q+ I+ D
Sbjct: 979 IVCGDEHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTN 1038
Query: 430 KAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 489
+++A+ P I + +P++ +L + K+ ++ K I I +
Sbjct: 1039 ASKQAIVEFFPD----------ITEGELYQDPYIRRILISLYKLKMERIQQKCHIEIKDS 1088
Query: 490 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 549
R ++G D T +L VFVQ+ G R ++ +++GLV+V KNPC
Sbjct: 1089 RMLLGVCDPTNSLPPNTVFVQLEEEDEDDDDG--------RKYEK-VIEGLVMVIKNPCT 1139
Query: 550 HPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ 609
HPGDVR LKAV+ L H+ + +VF KG P+ E SGSDLDGD YF C+D LI +
Sbjct: 1140 HPGDVRYLKAVDNLRLRHLRNVLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRS 1199
Query: 610 DPPMDYTPAQSM-QLDHDVQIED----VEEYFTNYIVNDSLGIIANAHTVFADREPRKAR 664
Y +++ D + + + ++ + LG + N+H +D A
Sbjct: 1200 KSETAYLGDETVSNNDKKANVFNDPFALSSMYSTNVERQELGKMYNSHLAISD--LFGAN 1257
Query: 665 SEPCLQLAEKFSIAVDFPKTGVPAEIPPH----LYVKEYPDFMEKPD--KPTYESQNVIG 718
E +Q++++ +D+PKTG+ IP L K YP +M++ + + Y+S+ ++G
Sbjct: 1258 HEFSIQISKECFKEIDYPKTGIHGTIPKEANVWLKTKGYPHYMQRENSTRVYYQSKTIMG 1317
Query: 719 KLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMD 778
K++ + + I F + S D VD +E +++ A Y ++ +L+
Sbjct: 1318 KMYDQIDQLV----YIGDFLPNI---SLDKSNLVDDYEIYLNSAKILYSQYKLQVHSLLR 1370
Query: 779 YYGIKTEAEILTGSIMK--MSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTED-- 834
+Y ++E I+ G + + +S +K E ++ + + KE E+
Sbjct: 1371 HYSAESEESIMIGFLDQGFISDKVSKDIKGEMKNDYIKIQQTFENEFLKEFGEQHKENCL 1430
Query: 835 -----DAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPW 870
+ K SAWYHV Y + D L F W
Sbjct: 1431 LIHRVNIEKKVSAWYHVAY---------SDLKDDRALGFYW 1462
>gi|452838162|gb|EME40103.1| hypothetical protein DOTSEDRAFT_138071 [Dothistroma septosporum
NZE10]
Length = 947
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 186/586 (31%), Positives = 301/586 (51%), Gaps = 61/586 (10%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
VH++ +TP+ Y GP+ +NRVLR + D+F+R+ F DED + R
Sbjct: 139 VHKIIITPAGTYLEGPDAEPTNRVLRRYHHSTDHFVRVIFQDEDRSPM-------RHDPR 191
Query: 203 TDITRTRIY-TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA---SRYG--LTAA 256
TD +++IY R L +LI R F FL FS S LR S W A S+ G + A
Sbjct: 192 TD--QSQIYHMRFKGVLDGSVLICGRAFSFLGFSHSSLRSQSCWFSAPMVSKQGSLVFAE 249
Query: 257 EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDG 316
++ + +G+F +IR AK AAR+GQ+F+ + ++ + +E+ +P+V+ + FSDG
Sbjct: 250 QVIKELGDFSKIRVPAKCAARIGQNFTDTNASVKLRPEEVFELPNVE----RNGRDFSDG 305
Query: 317 IGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYES 374
+G +S + V + G K P+A QIR+ G KG+VA D K+L +R +M+KYE+
Sbjct: 306 VGTISERLLQSVHRRYGSKKLLKPTALQIRFQGSKGMVALDSRLPGKRLMIRPNMKKYET 365
Query: 375 ELT-KLDVLAWS-KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD---------A 423
T L++ + + P LNR I ++ LG F Q A+ L A
Sbjct: 366 AATWDLEICGAAFRPLPMVLNRPFIKVMEDLGTPISTFMDLQNAAMVHLQRMTASCINTA 425
Query: 424 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 483
I D +A A + + +++ L G + F+ +++ +KL +++ K R
Sbjct: 426 IFLDDSEACRATRM------SELIRYLGQIGLDYHHDHFMYSVVEMAVVAKLRDIKYKGR 479
Query: 484 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVV 543
I + G ++ G +DET L +++V + + ++ +V ++V
Sbjct: 480 IPVEQGVTLYGIMDETGYLGPREIYV---------------VTEKAEGGKKVVVANDIIV 524
Query: 544 AKNPCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCW 600
++P LHPGD++V+ AV+VP L + + VVF + G R P++ G DLDGD+Y + W
Sbjct: 525 TRSPALHPGDMQVVNAVDVPQTSPLKRLSNVVVFSKHGDRDLPSQLGGGDLDGDLYNIIW 584
Query: 601 DDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREP 660
D +L P + P DY ++QLD DV +D+ ++F ++ +D LG+I H AD+
Sbjct: 585 DPKLRPMRTFQPADYPRVSAVQLDRDVVRKDMSDFFVTFMESDVLGMICTTHLQLADQRS 644
Query: 661 RKARSEPCLQLAEKFSIAVDFPKTGVPA---EIPPHLYVKEYPDFM 703
C++LA S AVDF KTG+P +IP + VK PDFM
Sbjct: 645 AGVLDPDCIKLAGMASTAVDFSKTGIPVNIKDIPRYTRVK--PDFM 688
>gi|321261399|ref|XP_003195419.1| hypothetical protein CGB_G5150C [Cryptococcus gattii WM276]
gi|317461892|gb|ADV23632.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 1120
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 229/789 (29%), Positives = 361/789 (45%), Gaps = 90/789 (11%)
Query: 140 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 199
LV + V VTP+R+ P+ SN V R + +D +R+ F DE+ D++ D
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADYMKLV 425
Query: 200 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 259
S I R+ L+ G++IG F +A S+SQ +E + W F + + E+R
Sbjct: 426 DSIN--PAVGIMARVRRALQFGLIIGGETFYPVASSASQQKEHAMW-FINNKIIDGLELR 482
Query: 260 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 319
WMG E VAK+AAR+G FS+S+ +++ ++ E +PD++ + F+DG G
Sbjct: 483 NWMGTVHET-VVAKHAARMGLPFSTSR-IVNMKINIGEELPDIE----RNGRCFTDGCGI 536
Query: 320 VSAEFARKVASKCGLK---DNPPSAFQIRYGGYKGVVA--ADPTSSKKLSLRDSMRKYES 374
E + A K + PSA Q R GG KGV++ + + ++ LR SM K+ S
Sbjct: 537 AGREVLNQAALALNEKFGINAQPSAIQFRLGGAKGVLSDWSQLVNEYEIRLRPSMIKFRS 596
Query: 375 ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDE----IFEKKQREAVRQLDAILTDPLK 430
+L L+V+ +KYQ FLNRQ I+++ G+ E IFE + D + + +
Sbjct: 597 DLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFRDRVWNNAIT 656
Query: 431 AQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 490
+ E + N L +L+ G+ + P + + L +L+ + R+ + +G
Sbjct: 657 END--EQLIALCNDFPLAQLIKSGFSEN--PLVLDVAAIIECRALQDLKWRARVKLSDGV 712
Query: 491 SMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLH 550
++G DET TL G++F Q + S + +V ++V C
Sbjct: 713 YLIGIADETGTLKEGEIFCQFQ--------------ENDESPPKVVVNEVLVCRAPAC-- 756
Query: 551 PGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD 610
DVR AV+ P L H+ + +VF +GMR P+ G DLDGD Y + WD + +
Sbjct: 757 --DVRRAWAVDRPELRHLKNVIVFSTQGMRDMPSMLGGGDLDGDDYTLIWDQRFVQSLKV 814
Query: 611 -PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADR----EPRKARS 665
PMDY + + H Q + + E F Y++ND LG + N H +D +PR
Sbjct: 815 YDPMDYEAPDPISVKHVTQ-KHLNENFVQYVLNDVLGQVDNCHLALSDMYTPFDPR---- 869
Query: 666 EPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPD-KPTYESQNVIGKLFRAV 724
CL L+E S AVDF KTG A + P L KE+PDFM+K D K YES+ ++GK+FR V
Sbjct: 870 --CLHLSEIHSTAVDFAKTGQAAALDPSLRPKEWPDFMDKDDVKVVYESKGILGKIFRIV 927
Query: 725 KDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDH---IDDAIYHKGNYDYKLGNLMDYYG 781
+ A H S ++ + Y D + F H +D K +Y+ L M Y
Sbjct: 928 QADA-HFS-----PSDLEQMGYPTDPRIIRFPLHESLLDRLKPLKASYERDLQYDMRRYR 981
Query: 782 IKTEAEILTGSIMKMSKSFTKRRDA-------EAIGMAVRALRKEARAWFKEKSGSDTED 834
+ E EI +G ++ +K + RD EA + V +R+ A+ + T
Sbjct: 982 V-YEPEIPSGIAIR-NKRRKRVRDQNLNEPLREAYNILVNNVRETAQKIVNDFEFKTTLT 1039
Query: 835 DAYAKASAWYHVTYHPDYWGCYNQGMNRDHF------------------LSFPWCVYDRL 876
A Y +TY + + Q + F +SF WC L
Sbjct: 1040 PMQVVARHCYALTYEEVHVRQWEQALAEGKFGEKPEDDEDSERLRPKPLISFAWCFCQEL 1099
Query: 877 VEIKKDKTS 885
++I S
Sbjct: 1100 IQIVSQAAS 1108
>gi|343428005|emb|CBQ71530.1| related to RNA-dependent RNA polymerase [Sporisorium reilianum SRZ2]
Length = 1505
Score = 249 bits (635), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 195/633 (30%), Positives = 314/633 (49%), Gaps = 71/633 (11%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
V V +TP+R GP ++ SNRVLR F +FLR++F DED D+ + R A
Sbjct: 466 VFHVTITPTRTLLEGPFMDASNRVLRLFPEFGSHFLRVAFCDEDGDRFPVS----RHDFA 521
Query: 203 TDI-TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTAA 256
DI + + + RI + L+ GI I R+FE LA+S S L W F + G A
Sbjct: 522 DDIDSESFVRERIGTPLKEGIDIAGRRFEALAWSGSGLGSHHCWFVTAFTDKDGKWWNAE 581
Query: 257 EIREWMGNFREIRNV-AKYAARLGQSFSSSKETLSVHMDEIEIIPD-----------VKI 304
IR +GNF + N A++ ARL Q+FS++ T+ + D I+I+ D
Sbjct: 582 RIRASLGNFSRVENQPARFGARLSQAFSATSSTIRISDDWIQIVEDDFSHALMPSSNGNG 641
Query: 305 EIGKTKYVFSDGIGKVSAEFARKVASK-CGLKD-------------NPPSAFQIRYGGYK 350
K +Y+ +DG+G++S ++ + C +K+ PSA Q R GG K
Sbjct: 642 RSSKQRYLLTDGVGEISRALLNEIWRELCAVKNMRREWTLCEQDAARIPSAIQFRLGGAK 701
Query: 351 GVVAADPT-SSKKLSLRDSMRKYES-ELTKLDVLAWS-KYQPCFLNRQLISLLSTLGIWD 407
GV+ +P K + +R SM K+ + E L+V S P LNR LI+ L LG+
Sbjct: 702 GVLCLNPQLKGKVMKVRHSMIKFSAPEHRDLEVATTSFSALPARLNRPLINALEDLGVPA 761
Query: 408 EIFEKKQREAVRQLDAILTDPLKAQEAL---ELMSPGENTNILKEL-LICGYKPD---AE 460
+F Q +AV + +A + + L E + + L I G +PD A+
Sbjct: 762 HVFLTLQDKAVESAQSARKCFRRASQLMGTFALSDTAEMHRLFRRLDSIVGIQPDQLPAD 821
Query: 461 PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLH 520
L+ + A+ L +L+ K RI + +G +++G +DE L G++F Q+ +
Sbjct: 822 GILNRLCTIVIAAALGDLKRKARIPV-DGCTLIGVVDEFGFLQKGEIFAQVD-------Y 873
Query: 521 GESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQ- 576
G+ F++ V+G V+V ++P +HPGDVRV+ AV P H + + +VF +
Sbjct: 874 GKDGSFTA--------VEGRVMVGRSPTIHPGDVRVVNAVVPPRGHPLWQLRNVLVFNKC 925
Query: 577 KGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYF 636
RP + SG DLDGDIY + D +L P + + P Y L D+ ++F
Sbjct: 926 PTGRPLQSILSGGDLDGDIYTIYRDPQLFPKRIESPGQYKTVAPRSLAAPCTFADLADFF 985
Query: 637 TNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPA---EIPPH 693
+Y++ND +G++++ H AD+ + C++LA+ + AVD+ KTG ++P
Sbjct: 986 VDYVINDQVGLVSHFHLQIADKSHLHSLDPDCIRLAQLHAKAVDYRKTGQAVHRRDVPMP 1045
Query: 694 LYVKEYPDFM-EKPDKP-TYESQNVIGKLFRAV 724
+ E PDF+ ++P P Y S +G+L+RA+
Sbjct: 1046 PFGAERPDFLVQRPAGPGIYPSTRALGQLYRAI 1078
>gi|426197722|gb|EKV47649.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1202
Score = 249 bits (635), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 205/639 (32%), Positives = 320/639 (50%), Gaps = 77/639 (12%)
Query: 142 YVHRVQVT--PSRVYFCGPEINVSNRVLRHFRR-DIDNFLRISFIDEDLDKIHSTDLSPR 198
Y H +QVT P+ ++ GP I+ SNRVLR + + + +NFLR+ F DE+ +L R
Sbjct: 397 YYHSLQVTISPTSIFLNGPFIDKSNRVLRRYSKANHENFLRVEFRDEN-------NLQYR 449
Query: 199 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS----RYGL- 253
D + R+ + G++I R+F FLA+S S LRE S W + ++G+
Sbjct: 450 SDKDID-DEEFVRRRLGHFMHEGLVIAGRRFRFLAYSQSALREHSVWFVKAFRDPKHGIV 508
Query: 254 TAAEIREWMGNFREI---RNV----AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEI 306
A +I E +GNFR++ R + A++ AR+ Q+FS++ + V +DEI I D+
Sbjct: 509 NAGKIIESLGNFRDLAYDRTLGYCPARFGARVSQAFSATDAAI-VEVDEILIKRDITTPD 567
Query: 307 GKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIRYGGYKGVVAAD--PTSSK 361
G +Y F+DG G +SA+ AR + + K ++ P A+QIR+ G KG+++ D S
Sbjct: 568 G--QYTFTDGSGDMSADLARDIWHRIARKRDRNDFPRAYQIRHEGSKGMISVDYRLNGSN 625
Query: 362 KLSLRDSMRKYES-ELTKLDV-LAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 419
LSLRDSM K+++ E +++V A + P +LNR LI +L LG+ E+F+ Q EAVR
Sbjct: 626 TLSLRDSMIKFDAPESNEIEVSRAIDQPTPYYLNRFLIMILEGLGVKHEVFQGFQDEAVR 685
Query: 420 QLDAILTDPLKAQEALELMSPGENTNI------LKELLICGYKPDAEPFLSMMLQTFRAS 473
+ A L+ G I L +L + D P L+
Sbjct: 686 GTQQAMEHLSSASHLLQAHGLGLTFKIPSTMANLSKLDLDNLVRD--PLFDQPLRLGVYH 743
Query: 474 KLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ 533
L +L+ K RI IPN +++G D L +VFV I H E +
Sbjct: 744 VLRDLKYKARIPIPNAWTLVGVADTHGYLKADEVFVCIK-------HPE---------KG 787
Query: 534 RFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFPQKGMRPHPNECS 587
F ++G V+++++P +HPGDV++ A+ P A + + VVF KG RP P+
Sbjct: 788 SFYLEGPVLISRSPTIHPGDVQLAMAIGGPRQGSPFAREPLPNTVVFSVKGDRPLPSCLG 847
Query: 588 GSDLDGDIYFVC--WDDELIPPQQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDS 644
G DLDGD Y + D P++ P +Y A+ + ++DV ++ YIV+D
Sbjct: 848 GGDLDGDPYNIIPLRDHPYFTPEKTYEPANYEAAEKQLTEWPCTMKDVADFVMQYIVSDV 907
Query: 645 LGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAE---IP------PHLY 695
+G++A + AD+ + + CL LA+ S AVD+PKTG P + IP P
Sbjct: 908 IGVVATNWLIIADQR-KDITDDDCLVLAKLHSDAVDYPKTGRPVQQDHIPRPRNPKPDWL 966
Query: 696 VKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCI 734
E + + YESQ +GKL RA+ D+ H +
Sbjct: 967 APETLENVLSQGGRYYESQTALGKLTRAI-DLKAHEPAV 1004
>gi|409080807|gb|EKM81167.1| hypothetical protein AGABI1DRAFT_56570 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1201
Score = 249 bits (635), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 205/639 (32%), Positives = 320/639 (50%), Gaps = 77/639 (12%)
Query: 142 YVHRVQVT--PSRVYFCGPEINVSNRVLRHFRR-DIDNFLRISFIDEDLDKIHSTDLSPR 198
Y H +QVT P+ ++ GP I+ SNRVLR + + + +NFLR+ F DE+ +L R
Sbjct: 395 YYHSLQVTISPTSIFLNGPFIDKSNRVLRRYSKANHENFLRVEFRDEN-------NLQYR 447
Query: 199 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS----RYGL- 253
D + R+ + G++I R+F FLA+S S LRE S W + ++G+
Sbjct: 448 SDKDID-DEEFVRRRLGHFMHEGLVIAGRRFRFLAYSQSALREHSVWFVKAFRDPKHGIV 506
Query: 254 TAAEIREWMGNFREI---RNV----AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEI 306
A +I E +GNFR++ R + A++ AR+ Q+FS++ + V +DEI I D+
Sbjct: 507 NAGKIIESLGNFRDLAYDRTLGYCPARFGARVSQAFSATDAAI-VEVDEILIKRDITTPD 565
Query: 307 GKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIRYGGYKGVVAAD--PTSSK 361
G +Y F+DG G +SA+ AR + + K ++ P A+QIR+ G KG+++ D S
Sbjct: 566 G--QYTFTDGSGDMSADLARDIWHRIARKRDRNDFPRAYQIRHEGSKGMISVDYRLNGSN 623
Query: 362 KLSLRDSMRKYES-ELTKLDV-LAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 419
LSLRDSM K+++ E +++V A + P +LNR LI +L LG+ E+F+ Q EAVR
Sbjct: 624 TLSLRDSMIKFDAPESNEIEVSRAIDQPTPYYLNRFLIMILEGLGVKHEVFQGFQDEAVR 683
Query: 420 QLDAILTDPLKAQEALELMSPGENTNI------LKELLICGYKPDAEPFLSMMLQTFRAS 473
+ A L+ G I L +L + D P L+
Sbjct: 684 GTQQAMEHLSSASHLLQAHGLGLTFKIPSTMANLSKLDLDNLARD--PLFDQPLRLGVYH 741
Query: 474 KLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ 533
L +L+ K RI IPN +++G D L +VFV I H E +
Sbjct: 742 VLRDLKYKARIPIPNAWTLVGVADTHGYLKADEVFVCIK-------HPE---------KG 785
Query: 534 RFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFPQKGMRPHPNECS 587
F ++G V+++++P +HPGDV++ A+ P A + + VVF KG RP P+
Sbjct: 786 SFYLEGPVLISRSPTIHPGDVQLAMAIGGPRQGSPFAREPLPNTVVFSVKGDRPLPSCLG 845
Query: 588 GSDLDGDIYFVC--WDDELIPPQQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDS 644
G DLDGD Y + D P++ P +Y A+ + ++DV ++ YIV+D
Sbjct: 846 GGDLDGDPYNIIPLRDHPYFTPEKTYEPANYEAAEKQLTEWPCTMKDVADFVMQYIVSDV 905
Query: 645 LGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAE---IP------PHLY 695
+G++A + AD+ + + CL LA+ S AVD+PKTG P + IP P
Sbjct: 906 IGVVATNWLIIADQR-QDITDDDCLVLAKLHSDAVDYPKTGRPVQQDHIPRPRNPKPDWL 964
Query: 696 VKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCI 734
E + + YESQ +GKL RA+ D+ H +
Sbjct: 965 APETLENVLSQGGRYYESQTALGKLTRAI-DLKAHEPVV 1002
>gi|281207108|gb|EFA81291.1| RNA-directed RNA polymerase [Polysphondylium pallidum PN500]
Length = 2852
Score = 249 bits (635), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 231/788 (29%), Positives = 360/788 (45%), Gaps = 140/788 (17%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD-KIHSTD-LSPRGS 200
V +TP+RV P I + NR +R F + F+ + F +EDL +I D L P
Sbjct: 1320 VKSAYITPTRVILNLPRIQLGNRCIRQFPSE--RFMSVQFTEEDLQIRIEYQDFLLP--- 1374
Query: 201 SATDITRTRIYTRILSTLRNGILIGDR-KFEFLAFSSSQLRESSAWMFASRYGLTA---- 255
Y+ IL NGI + + F FL SSSQ+R +W + G+
Sbjct: 1375 ---------FYSHIL---LNGINVPEMGTFYFLGSSSSQVRNYQSWFYCVEEGVNKESRL 1422
Query: 256 AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI----------E 305
EIRE M + S+S+ K ++ + IP ++I +
Sbjct: 1423 KEIREAM------------IGKTDSSWSARKALRAMSLVFPSTIPTIRIPPHEYHEGLDD 1470
Query: 306 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL 365
I + + F++G G V E AR++A + SA+QIR GG KGVV+ + + + L
Sbjct: 1471 IVRNDHNFTEGCGYVGIETAREIAIAGNFPQDT-SAYQIRIGGNKGVVSVHHSIRRGIYL 1529
Query: 366 RDSMRKYESE-----LTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQ 420
R SMRK+ + L+V++ S + C LNRQ+I+LL LG+ D F Q+ A+ +
Sbjct: 1530 RKSMRKFNTTDEHAYNRTLEVISVSSKKACNLNRQIINLLVGLGVLDGFFLSLQQAALDK 1589
Query: 421 LDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRT 480
L I D + + +S + EL + +P + LQ KL +++
Sbjct: 1590 LAHIFNDESVRRHIMHELSSIDEA--FDELDLAA----NDPLICSSLQLCYLKKLDQIKD 1643
Query: 481 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL 540
K I I + R+++G DE+ L +VF+QIS + E S R ++ G
Sbjct: 1644 KCMIEIDSARTVLGVSDESGILGPDEVFLQIS------IDEEDGHIS------RKVITGQ 1691
Query: 541 VVVAKNPCLHPGDVRVLKAVNVPALHHM-VDCVVFPQKGMRPHPNECSGSDLDGDIYFVC 599
V V KNPCLHPGD+RVL AV+VP L + VD + F Q G P+ +CSGSDLDGD YFV
Sbjct: 1692 VFVCKNPCLHPGDIRVLTAVDVPELRNCYVDVIAFSQNGEVPNFKQCSGSDLDGDRYFVG 1751
Query: 600 WDDELI------PP---------QQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDS 644
+D ++ PP + +PP D + Q V++Y TN I S
Sbjct: 1752 FDQTMVKFITPEPPFLGDESANTKVEPPYDGSHKQL-----------VKQYITN-ITRGS 1799
Query: 645 LGIIANAHTVFADREPRKARSEP-CLQLAEKFSIAVDFPKTGVPAEIP----PHL-YVKE 698
LG IA +H D + + + P ++LA + I VD KTGV ++P HL Y K
Sbjct: 1800 LGKIALSHLAICD---KFSPTHPLAIELAIQHFIEVDAFKTGVNGKVPDIVKKHLNYFKL 1856
Query: 699 YPDFMEK--PDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFE 756
YP+FME P K + S ++GKL++ + ++ + + D + VDG++
Sbjct: 1857 YPNFMESSMPKKNYWVSHKILGKLYQI-------SVPLKAIPRYIPDTFVDEGLLVDGYQ 1909
Query: 757 DHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRAL 816
+++ DA Y + + +L+ Y I E +I+ I + ++ R + I ++
Sbjct: 1910 EYLADAKKTYTRYKFAINSLLTRYDIDREEDII---IEFIKETINSMRYTKLIIDELKKS 1966
Query: 817 RKEARAWFKEK-----SGSDTEDDA-------YAKASAWYHVTYHPDYWGCYNQGMNRDH 864
E + F+++ G D ++ K SAWY V Y + D
Sbjct: 1967 YHEIQDSFRDEFIRVFPGKDVDEKKRFNSEAIQKKVSAWYKVAY---------SDVENDK 2017
Query: 865 FLSFPWCV 872
L+F W V
Sbjct: 2018 TLTFYWIV 2025
>gi|66804721|ref|XP_636093.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
gi|60464394|gb|EAL62541.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
Length = 2417
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 207/762 (27%), Positives = 356/762 (46%), Gaps = 97/762 (12%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS-TDLSPRGSS 201
+ V +TPSR F P + S R +R F NF+ + ++E L+ + + P +
Sbjct: 1193 IRDVFITPSRTIFIQPTLQRSCRAVRKFGSS--NFIVVKIVNESLEPLQGVNNKHPLHEN 1250
Query: 202 ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 261
RI L GIL+G + + S+SQLRE S+W +++ G +I W
Sbjct: 1251 -----------RIKPILEGGILVGGEIYSYAGNSNSQLREYSSWFVSNQIGTHTVKI--W 1297
Query: 262 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 321
G + NV K+ +G FS++ T+++ + I I D I + + F++G G++
Sbjct: 1298 SG-IEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQD----ITRNTHEFTEGCGEIG 1352
Query: 322 AEFARKVASKCGLKDNPPS--AFQIRYGGYKGVV-----AADPTSSKKLSLRDSMRKYE- 373
E A+ + + PS A+Q+R GG KGV+ A DP+ + +R SM K+
Sbjct: 1353 PELAKHLNENYNFR---PSTCAYQVRIGGNKGVLVVNNQAPDPSG---IYIRPSMVKFNP 1406
Query: 374 ----SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 429
E L++ + S C LNRQ+ISLLSTLG D +F Q + Q+ I+ D
Sbjct: 1407 IDCGDEHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTN 1466
Query: 430 KAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 489
+++A+ P L + +P++ +L + K+ ++ K I I +
Sbjct: 1467 ASKQAIVEFFPDITEGELYQ----------DPYIRRILISLYKLKMERIQQKCHIEIKDS 1516
Query: 490 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 549
R ++G D T +L VFVQ+ + R ++ +++GLV+V KNPC
Sbjct: 1517 RMLLGVCDPTNSLPPNTVFVQLEEE-------DEDDDDDGRKYEK-VIEGLVMVIKNPCT 1568
Query: 550 HPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ 609
HPGDVR LKAV+ L H+ + +VF KG P+ E SGSDLDGD YF C+D LI +
Sbjct: 1569 HPGDVRYLKAVDNIRLRHLRNVLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRS 1628
Query: 610 DPPMDYTPAQSMQLDHDVQIEDVEEYF---TNYIVN---DSLGIIANAHTVFADREPRKA 663
+ Y +++ ++D + + F + Y N LG + ++H +D+ A
Sbjct: 1629 ESETAYLVVETVS-NNDKKANVFNDPFALSSMYSTNAERQELGKLYHSHLAISDQ--YGA 1685
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVK----EYPDFMEKPD--KPTYESQNVI 717
+ +Q++++ +D+PKTG+ IP + ++ YP +M++ + + Y+S+ ++
Sbjct: 1686 NHKYSIQISKECFKEIDYPKTGIHGTIPKEVNIRLQTVGYPHYMQRENSTRVYYQSKKIM 1745
Query: 718 GKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLM 777
GK++ + + I F + S D VDG+E +++ A Y ++ +L+
Sbjct: 1746 GKMYDQIDQLV----YIGDFLPNI---SLDKSNLVDGYEIYLNSAKILYSQYKLQVHSLL 1798
Query: 778 DYYGIKTEAEILTGSIMK--MSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTED- 834
+Y ++E I+ G + + +S +K E ++ + + KE E+
Sbjct: 1799 RHYSAESEESIMIGFLDQGFISDKVSKDIKGEMKNDYIKIQQTFENEFLKEFGEQHKENC 1858
Query: 835 ------DAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPW 870
+ K SAWYHV Y + D L F W
Sbjct: 1859 LLIHRVNIEKKVSAWYHVAY---------SDLKDDRALGFYW 1891
>gi|290993029|ref|XP_002679136.1| predicted protein [Naegleria gruberi]
gi|284092751|gb|EFC46392.1| predicted protein [Naegleria gruberi]
Length = 464
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 166/478 (34%), Positives = 253/478 (52%), Gaps = 32/478 (6%)
Query: 262 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 321
+GNF I+ A+YAAR+GQ FS + E +S E EIIPD I + YVF+DG+G++S
Sbjct: 1 LGNFSHIKVKARYAARIGQCFSHTYEGIS---KEYEIIPD----ITRNNYVFTDGVGRIS 53
Query: 322 AEFARKVASKCGL----KDNPPSAFQIRYGGYKGVVAADP----TSSKKLSLRDSMRKY- 372
EFA ++ K + K+ PSAFQ R GG KGVV DP S L L S K+
Sbjct: 54 LEFAVELTKKFQISFAGKEYIPSAFQFRMGGLKGVVVVDPDIHLYSDLDLLLSKSQEKFI 113
Query: 373 ESELTKLDVLAWSKYQP-CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA 431
+S ++ +++ +SK LNRQLI+LLS+ + D +F + + ++ + D
Sbjct: 114 DSSSSEFELITYSKRNRFASLNRQLIALLSSNKVSDSVFLQLLDRDLEEIKKLFNDKKYM 173
Query: 432 QEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLL-ELRTKTRIFIPNGR 490
+ L +K++ Y D++ S ++Q+ K ++ RI +
Sbjct: 174 RRVLRKSQDNIVGKNMKKVASLNY-LDSQYDFSKVVQSGEDIKFFYQIEPNGRIILDKAL 232
Query: 491 SMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLH 550
+MG +D L +VF+Q+S + +S L+ + + G V + ++PCLH
Sbjct: 233 LLMGVVDFYGVLEEDEVFIQLS----ELENSDSDLYDDNCFVNGGTLSGTVAITRSPCLH 288
Query: 551 PGDVRVLKAVNVP----ALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIP 606
PGD+R KAV P L H+ D +VF QKG RP N+ SG D DGD + V WD L+
Sbjct: 289 PGDIRKFKAVTDPEKISKLSHLRDVIVFSQKGNRPAANKMSGGDYDGDFFQVFWDPLLVN 348
Query: 607 PQQDPPMDYT--PAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKAR 664
++ PPM+Y P + D ++ + E+ T YI+ND+LG++A H D+E R
Sbjct: 349 FEEYPPMNYEGLPPEEKHDGCDYRV--IREFLTEYIINDNLGVVAFLHLEHYDKEGDGLR 406
Query: 665 SEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKP-DKPTYESQNVIGKLF 721
SEPCL+LA+ S VD+ KTGV +P L+ P +M + K TY S++VIG ++
Sbjct: 407 SEPCLKLAKHHSYQVDYAKTGVRKPLPTELFSNSRPHYMPRVFGKKTYHSEDVIGSIY 464
>gi|14475569|emb|CAC41974.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]
Length = 1883
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 206/762 (27%), Positives = 357/762 (46%), Gaps = 97/762 (12%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
+ V +TPSR F P + S R +R F NF+ + ++E L+ + +
Sbjct: 940 IRDVFITPSRTIFIQPTLQRSCRAVRKFGSS--NFIVVKIVNESLEPLQGVN-------- 989
Query: 203 TDITRTRIY-TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 261
+ ++ RI L GIL+G + + S+SQLRE S+W +++ G +I W
Sbjct: 990 ---NKHPLHENRIKPILEGGILVGGEIYSYAGNSNSQLREYSSWFVSNQIGTHTVKI--W 1044
Query: 262 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 321
G + NV K+ +G FS++ T+++ + I I D I + + F++G G++
Sbjct: 1045 SG-IEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQD----ITRNTHEFTEGCGEIG 1099
Query: 322 AEFARKVASKCGLKDNPPS--AFQIRYGGYKGVV-----AADPTSSKKLSLRDSMRKYE- 373
E A+ + + PS A+Q+R GG KGV+ A DP+ + +R SM K+
Sbjct: 1100 PELAKHLNENYNFR---PSTCAYQVRIGGNKGVLVVNNQAPDPSG---IYIRPSMVKFNP 1153
Query: 374 ----SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 429
E L++ + S C LNRQ+ISLLSTLG D +F Q + Q+ I+ D
Sbjct: 1154 IDCGDEHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTN 1213
Query: 430 KAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 489
+++A+ P L + +P++ +L + K+ ++ K I I +
Sbjct: 1214 ASKQAIVEFFPDITEGELYQ----------DPYIRRILISLYKLKMERIQQKCHIEIKDS 1263
Query: 490 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 549
R ++G D T +L VFVQ+ + R ++ +++GLV+V KNPC
Sbjct: 1264 RMLLGVCDPTNSLPPNTVFVQLEEE-------DEDDDDDGRKYEK-VIEGLVMVIKNPCT 1315
Query: 550 HPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ 609
HPGDVR LKAV+ L H+ + +VF KG P+ E SGSDLDGD YF C+D LI +
Sbjct: 1316 HPGDVRYLKAVDNIRLRHLRNVLVFSTKGDVPNFKEISGSDLDGDRYFFCYDKSLIGNRS 1375
Query: 610 DPPMDYTPAQSMQLDHDVQIEDVEEYF---TNYIVN---DSLGIIANAHTVFADREPRKA 663
+ Y +++ ++D + + F + Y N LG + ++H +D+ A
Sbjct: 1376 ESETAYLVVETVS-NNDKKANVFNDPFALSSMYSTNAERQELGKLYHSHLAISDQ--YGA 1432
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVK----EYPDFMEKPD--KPTYESQNVI 717
+ +Q++++ +D+PKTG+ IP + ++ YP +M++ + + Y+S+ ++
Sbjct: 1433 NHKYSIQISKECFKEIDYPKTGIHGTIPKEVNIRLQTVGYPHYMQRENSTRVYYQSKKIM 1492
Query: 718 GKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLM 777
GK++ + + I F + S D VDG+E +++ A Y ++ +L+
Sbjct: 1493 GKMYDQIDQLV----YIGDFLPNI---SLDKSNLVDGYEIYLNSAKILYSQYKLQVHSLL 1545
Query: 778 DYYGIKTEAEILTGSIMK--MSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTED- 834
+Y ++E I+ G + + +S +K E ++ + + KE E+
Sbjct: 1546 RHYSAESEESIMIGFLDQGFISDKVSKDIKGEMKNDYIKIQQTFENEFLKEFGEQHKENC 1605
Query: 835 ------DAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPW 870
+ K SAWYHV Y + D L F W
Sbjct: 1606 LLIHRVNIEKKVSAWYHVAY---------SDLKDDRALGFYW 1638
>gi|395334239|gb|EJF66615.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1225
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 205/638 (32%), Positives = 321/638 (50%), Gaps = 70/638 (10%)
Query: 131 SPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKI 190
+PA+ H V +TP+ + GP SNRV+R + ++ + FLR+SF DE+
Sbjct: 415 APAVDAPATFQCFH-VSITPTTMILEGPFPERSNRVIRMYWQNEECFLRVSFQDEN---- 469
Query: 191 HSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---F 247
L R D R+ I R LR+GI I F FLA+S S L+E + W F
Sbjct: 470 ---RLQFRFDREVD-GRSFINRRFRGVLRDGITIAGAHFSFLAYSQSALKEHAVWFVKPF 525
Query: 248 ASRYG------LTAAEIREWMGNFRE------IRNVAKYAARLGQSFSSSKETLSVHMDE 295
R G + A I E +GNFR I A+YAAR+ Q+F+++ +++V +D+
Sbjct: 526 RHRDGHGVECYVDATTIIENLGNFRVSFDTTLIHCPARYAARIAQAFTATDASITVDVDQ 585
Query: 296 IEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV---ASKCGLKDNP----PSAFQIRYGG 348
IE D++ G Y F+DG+G +S E AR++ + G + P P A+Q+R+ G
Sbjct: 586 IERGEDLEDATG--NYCFTDGVGTISRELAREIWRSVRERGRRSRPDRTYPRAYQVRFQG 643
Query: 349 YKGVVAADPT-SSKKLSLRDSMRKYES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGI 405
KG+++ D T S +K+ +R SM K+E+ + + ++V A+ + P FLNR LI LL LG+
Sbjct: 644 SKGMLSVDHTLSGRKIVIRPSMTKFEANQSSTIEVARAFDRPGPYFLNRPLIMLLEGLGV 703
Query: 406 WDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN---TNILKELLICGYKPDAEPF 462
E + Q AV +T ++ LE G + T+ + L G P +
Sbjct: 704 SYETLQALQDAAVYDAQQSVTSLERSARLLEAHGLGVSFRLTSAMLGLHKLGLDPLNDDV 763
Query: 463 LSMMLQTFRASKLL-ELRTKTRIFIP--NGRSMMGCLDETRTLNYGQVFVQISGAGYRQL 519
F + +L EL+ RI +P + +++G D L G++F I
Sbjct: 764 FWRQAMDFAINHVLRELKHHARIPVPSLDSWTLVGVADVHGELQDGEIFACID------- 816
Query: 520 HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVV 573
S + SR ++ +G +++++P +HPGDV+V+ A+ P A + + VV
Sbjct: 817 -------SPTESRLIYL-EGPCLISRSPTIHPGDVQVVHAIGRPPAGSALAKESLRNAVV 868
Query: 574 FPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVE 633
F +G RP P+ G DLDGD+Y V +L+PP+ P Y PA ++H+ +EDV
Sbjct: 869 FSIQGERPLPSCLGGGDLDGDLYNVTTRRDLLPPRTYTPASYEPAAKKLVEHECTMEDVA 928
Query: 634 EYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTG--VPAEIP 691
++ YI +D+LGIIA AD+ + CL+LA S AVD+PK+G VP
Sbjct: 929 DFVAEYISSDTLGIIATTWLKIADQSADGILDQDCLKLAALHSHAVDYPKSGQPVPVNQI 988
Query: 692 PHLYVKEYPDF-----MEKPDKPTYESQNVIGKLFRAV 724
P L K PD+ + + ++ Y S IGKLFR++
Sbjct: 989 PKLKSKTKPDWSAPETISRGNEDYYTSMKAIGKLFRSI 1026
>gi|403413304|emb|CCM00004.1| predicted protein [Fibroporia radiculosa]
Length = 1503
Score = 246 bits (627), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 195/648 (30%), Positives = 320/648 (49%), Gaps = 74/648 (11%)
Query: 132 PAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIH 191
P I L G H V TP+R+ GP ++ SNRV+R + D+FLR+ F DED
Sbjct: 398 PPIPLPPGHFLCHHVTYTPTRMILEGPYVSQSNRVIRRYPDHQDHFLRVDFRDED----- 452
Query: 192 STDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY 251
L R + D + + ++ R+ LR+G + R FEFLA+S S LRE + W Y
Sbjct: 453 --RLQYRWAREVDGS-SLLFDRVGGVLRSGFELAGRYFEFLAYSQSALREHAVWFINPFY 509
Query: 252 G-----LTAAEIREWMGNFRE-IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE 305
+TA IR+ +G+F IR +KYAARL Q+F+++ ++ + + E +PD
Sbjct: 510 HPEEGHITAQTIRDSLGDFSGVIRQPSKYAARLAQAFTATDPSVRITRGQWEEMPD---- 565
Query: 306 IGKTKYVFSDGIGKVSAEF----------ARKVASKCGLKDNPPSAFQIRYGGYKGVVAA 355
+G+ Y F+DG+G +S E +R + GLK PSA+QIR+ GYKG+V
Sbjct: 566 LGEKPYEFTDGVGTISTELGNLIWDALCASRPENRRRGLK---PSAYQIRFLGYKGMVVI 622
Query: 356 DPT-SSKKLSLRDSMRKYES---ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIF 410
D K+ LR SM K+ + +L ++++ A+ + +LNR LI +L G+ + F
Sbjct: 623 DEQLQGIKMHLRPSMNKFRAHDDDLAEIEIARAFERPGTSYLNRPLIMILEDRGVDKKAF 682
Query: 411 EKKQREAVRQLDAILTDPLKAQEALELMSPGENTN---ILKEL--LICGYKPDA------ 459
Q A + K+ L+ + G++ IL+ L + G+K +
Sbjct: 683 INLQERAKTDIYTASDSITKSVSMLKAHTLGKSYGLDFILQSLQNIGMGFKHEKSIHVLQ 742
Query: 460 EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQL 519
+PF+ ++ + L +++ RI IP+ ++G DE G +V AG +
Sbjct: 743 DPFIERLIHYSKNHVLRDIKHGARIPIPDSYLLVGVADE------GPAYVH---AGMENV 793
Query: 520 H--GESSLFSSSRSR---QRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA------LHHM 568
+ +F+ ++ + ++G VV++++P +HPGDV+ + A+ P ++
Sbjct: 794 FCLKKGEIFACVQNADDPEPTYLKGSVVISRSPVVHPGDVQRVWAIGSPPPDKVCFFRNL 853
Query: 569 VDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQ 628
+ VV P G R + G DLDGD+Y + L+P + + P Y A + LD D
Sbjct: 854 KNVVVLPSAGGRSLASCLGGGDLDGDLYSIIKHGPLLPTEHEDPASYLSAGTRTLDRDST 913
Query: 629 IEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPA 688
I D+ ++ Y+ +D LG++++ H + AD+ CL LAE S AVD+PK G+P
Sbjct: 914 IADICDFVVEYLNSDVLGLLSDRHLIIADQSKHGTNDTKCLSLAELCSQAVDYPKNGIPV 973
Query: 689 EI--PPHLYVKEYPDFMEKPDKPT-----YESQNVIGKLFRAVKDIAP 729
+I PH + PD+ + D YES +G LFR + + P
Sbjct: 974 DIHDSPHWLIPYKPDWHQAEDAAPRHTDYYESHRALGDLFRNIAIVDP 1021
>gi|302682738|ref|XP_003031050.1| hypothetical protein SCHCODRAFT_235575 [Schizophyllum commune H4-8]
gi|300104742|gb|EFI96147.1| hypothetical protein SCHCODRAFT_235575 [Schizophyllum commune H4-8]
Length = 1178
Score = 245 bits (626), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 191/616 (31%), Positives = 302/616 (49%), Gaps = 65/616 (10%)
Query: 148 VTPSRVYFCGPEINVSNRVLRHF-RRDIDNFLRISFIDEDLDKIH-STDLSPRGSSATDI 205
VTP+R+ F GP SNR++R + + D+FLR+SF DED K+H D GSS
Sbjct: 393 VTPTRMIFQGPFPERSNRIIRSYDAKHHDSFLRVSFTDED--KLHYRFDRDVDGSSM--- 447
Query: 206 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY----GLTAAEIREW 261
+ +RI L+NGI + KF+FLA+S S L+E + + + + AA I
Sbjct: 448 ----VRSRIERFLKNGICLAGHKFDFLAYSQSALKEHTVYFVKPFWVGIREVNAATIIAG 503
Query: 262 MGNFREIRNV---AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIG 318
+GNF + A+YAARL Q+F+++ ++ V +E+ + D+ G Y F+DG+G
Sbjct: 504 IGNFEGSEDRFCPARYAARLSQAFTATDASVIVEAEEVFPVNDISTPDGA--YHFTDGVG 561
Query: 319 KVSAEFARKVAS-------KCGLKDNPPSAFQIRYGGYKGVVAAD-PTSSKKLSLRDSMR 370
+S A + + + N P+AFQIR+ G KG+++ D +++ LR SM
Sbjct: 562 TMSKGMASETWAELQRWRKRTKKTKNVPAAFQIRFMGSKGMLSVDHALHGREVCLRHSMI 621
Query: 371 KYESELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 429
K+ES L++ A+ + +LNR LI ++ LG+ E F + Q AV+ + +
Sbjct: 622 KFESSSDTLEIARAFDRPGRYYLNRPLIMVMEGLGVPYESFLRHQEAAVQNVHSSSESLA 681
Query: 430 KAQEALELMSPGENTNILKELL----ICGYKP-DAEPFLSMMLQTFRASKLLELRTKTRI 484
K + E G + LL +C K DA F M++ L EL+ + RI
Sbjct: 682 KCAKMFESFGLGTAFRVPSLLLNLEKLCNVKNLDANVFYRQMIEFATHHVLRELKNRARI 741
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 544
IP +++G D R L G++FV I S + ++G V+++
Sbjct: 742 PIPGAYTLVGVADVHRYLGPGEIFVCIR---------------PHDSNEVTYLEGDVLIS 786
Query: 545 KNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 598
++P +HPGDV+V++A+ P A + + VVF +G RP P G DLDGD Y +
Sbjct: 787 RSPTIHPGDVQVVRAIGRPKAGSPFAKEPLANTVVFSVRGTRPLPTMLGGGDLDGDEYNL 846
Query: 599 C---WDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVF 655
E P + Y PA L + DV ++ ++I D LGI+A +
Sbjct: 847 IPLNSHPEFRPARTVEAASYAPAPRKTLTRAADMRDVADFVIDFINYDVLGIVAIHWLII 906
Query: 656 ADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIP--PHLYVKEYPDF-----MEKPDK 708
AD+ + E CL L++ S AVDF K+G P + P L+ + PD+ ++
Sbjct: 907 ADQSNKSIFDEDCLTLSQLHSDAVDFQKSGQPVALDRIPALHFRAKPDWNAPETVKANSA 966
Query: 709 PTYESQNVIGKLFRAV 724
Y+SQ IG+L RA+
Sbjct: 967 RYYKSQRAIGRLARAI 982
>gi|388857678|emb|CCF48827.1| related to RNA-dependent RNA polymerase [Ustilago hordei]
Length = 1462
Score = 245 bits (625), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 186/631 (29%), Positives = 306/631 (48%), Gaps = 69/631 (10%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
V+ V +TP+R+ GP ++ SNRVLR F +F+R++F DED D+ + G +
Sbjct: 457 VYHVAITPTRMLLEGPFMDASNRVLRLFPEFGSHFVRVAFCDEDGDRFPVSRHDLHGIDS 516
Query: 203 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTAAE 257
R RI L++GI I RKFE LA+S S L W F + G A
Sbjct: 517 ESFVRERIG----DPLKHGIAIAGRKFEALAWSGSGLGSHHCWFVTAFTDKDGNLWNAER 572
Query: 258 IREWMGNFREI-RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI----------EI 306
IR+ +G+F+ + R A+ ARL Q+FS++ T+ ++ D ++I+ D E
Sbjct: 573 IRQSLGDFQGVDRYPARLGARLSQAFSATSSTIKINDDWVKIVTDDHSNCAMPSNGPNER 632
Query: 307 GKTKYVFSDGIGKVSAEFARKVASK-CGLKD-------------NPPSAFQIRYGGYKGV 352
K Y+ +DG+G++S E + + C K+ PSA Q RYGG KGV
Sbjct: 633 EKQFYLLTDGVGEISRELRDDIWRELCSAKNMLREWQLSQQDARRIPSAIQFRYGGAKGV 692
Query: 353 VAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQP--CFLNRQLISLLSTLGIWDEI 409
+ +P K + +R SM K+ + + +A + + P LNR LI+ L LG+ ++
Sbjct: 693 LCLNPQLRGKVMKVRHSMIKFSAPKHRDLEVATTSFHPLPARLNRPLINALEDLGVPADV 752
Query: 410 FEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKEL----LICGYKPDA---EPF 462
F Q +AV D A + + + + + K I G PD +
Sbjct: 753 FVSLQNKAVESAQLARKDFKHASQLMRSFALSDTAEVHKLFHRLDSILGITPDNLHHDSI 812
Query: 463 LSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGE 522
L+ + A+ L +L+ K RI + +G +++G +DE L ++FVQ++
Sbjct: 813 LNRLCTIVIAAALGDLKRKARIPV-DGCTLIGVVDEFNYLGKNEIFVQVN---------- 861
Query: 523 SSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGM 579
Q I++G V++ ++P +HPGDVR++ AV P H + + VVF +
Sbjct: 862 -----DKEDGQYRIIEGRVMIGRSPTIHPGDVRIVTAVKPPPTHPLRQLRNVVVFNKHPH 916
Query: 580 -RPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTN 638
RP + SG+D DGDI+ + D++L P Q P Y L ED+ ++F +
Sbjct: 917 GRPLQSMLSGADFDGDIFTIYEDEQLFPKQMASPGVYKNTPPRALARPCTFEDLADFFVD 976
Query: 639 YIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPA---EIPPHLY 695
+++ND +G+++ H AD+ + C++LA+ + AVD+ KTG ++P
Sbjct: 977 FVINDQIGLVSTFHLHIADQSELHSLDPDCVKLAQLHAKAVDYRKTGQAVHRKDVPMPPL 1036
Query: 696 VKEYPDFM-EKP-DKPTYESQNVIGKLFRAV 724
PDF+ ++P + Y S +GKLFRA+
Sbjct: 1037 NSPRPDFLAQRPVGQGIYASSRALGKLFRAI 1067
>gi|403164222|ref|XP_003324286.2| hypothetical protein PGTG_05092 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375164936|gb|EFP79867.2| hypothetical protein PGTG_05092 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1282
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 198/626 (31%), Positives = 316/626 (50%), Gaps = 68/626 (10%)
Query: 138 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 197
D + V +TP+ + GP SN +LR + + F+R++ DED H D
Sbjct: 469 DNVFKCRSVTITPTTLILEGPLPEESNSILRLYDYN-SAFIRVAIRDEDGSNYHH-DREV 526
Query: 198 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYGLT 254
G RT + R L +G+ + R+F FL +SSS L+ AW F + +
Sbjct: 527 DG-------RTFLKQRYRPFLVDGLYVAGRRFMFLGYSSSALKCHQAWFVCPFVHKGAVM 579
Query: 255 AAE-IREWMGNFREIRNV-AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYV 312
+AE IR MG F + + A+Y AR+ Q+F+++++ +++ ++ IPDV+ + V
Sbjct: 580 SAEKIRSRMGTFSLVNRIPARYMARIAQAFTTTQKAVTLAPSQLRKIPDVQ----RNGSV 635
Query: 313 FSDGIGKVSAEFARKV-----ASKCGLKDNPP---SAFQIRYGGYKGVVAADPT-SSKKL 363
F+DG+G +S AR+V + LK S +QIR GGYKG+++ DPT + + +
Sbjct: 636 FTDGVGTISPSLARQVEQALLGTMMVLKRRNAINSSCYQIRLGGYKGMLSIDPTLAGEIV 695
Query: 364 SLRDSMRKYESELTKLDVLA-WSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD 422
LR SM K++++ LD+ + + + P FLNR LI +L L I +F Q++ VR ++
Sbjct: 696 GLRPSMSKFDADSYTLDIASSFRRPLPSFLNRPLIKILEDLKIPSHVFMTAQQKTVRSIE 755
Query: 423 AILTDPLKAQEALELMSPGENTN---ILKEL--LICGYKPDA--EPFLSMMLQTFRASKL 475
++ + +E G +++ ILK L+ PD F+ L L
Sbjct: 756 RSRESFRQSAKLMEKAGLGFSSSFPKILKRFSSLMRTDNPDEVRSTFIDDCLDLAVIECL 815
Query: 476 LELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRF 535
+L+ + RI + +++G DE L GQ++ + G + R
Sbjct: 816 RDLKYRARIPLEGSYTLVGVADEEFCLQEGQIYACVQEKG----------------KPRK 859
Query: 536 IVQGLVVVAKNPCLHPGDVRVLKAVNVP-----ALHHMVDCVVFPQKGMRPHPNECSGSD 590
+ G + ++++P +HPGDV+V+ A+ P L +V+CVVF G R P+ G D
Sbjct: 860 YLSGKIAISRSPSIHPGDVQVVHAIGRPPPGSEKLGALVNCVVFSVIGKRSLPSCLGGGD 919
Query: 591 LDGDIYFVCWDDELIPPQQD--PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGII 648
LDGD+Y + D ++IP Q+D P Y+P Q + L I D E+F +YI +D +GII
Sbjct: 920 LDGDLYSLITDPQMIPFQKDICSPGSYSPIQPILLPQPCTILDGIEFFLDYISSDLVGII 979
Query: 649 ANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEY-PDFM---- 703
A H AD++ CL+LAE S AVD+PKTGVP I V+ PDFM
Sbjct: 980 ATRHLQIADQQTLGTLHPDCLKLAELHSKAVDYPKTGVPVSIQDLPKVESAKPDFMCPEY 1039
Query: 704 -----EKPDKPTYESQNVIGKLFRAV 724
+K ++ YES V+G+LFRA+
Sbjct: 1040 MLNVHKKGNERYYESDKVLGRLFRAI 1065
>gi|392575092|gb|EIW68226.1| hypothetical protein TREMEDRAFT_74213 [Tremella mesenterica DSM
1558]
Length = 1004
Score = 242 bits (617), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 191/599 (31%), Positives = 291/599 (48%), Gaps = 70/599 (11%)
Query: 140 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPR- 198
LV + VQVTP+R+ P SN V R + ID+ +R+ F DE+ D+I D + +
Sbjct: 338 LVLIRTVQVTPTRLLIGAPTPEPSNSVTRRYAGKIDSIIRVQFSDEE-DRIFVQDYTKQV 396
Query: 199 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEI 258
S D+ + R+ LR G+++G R++ +A SSSQ +E + W F + E+
Sbjct: 397 DSQRPDLG---VMARVRRALRWGLVVGGRRYLPVASSSSQQKEHAMW-FIDNKEIDMLEL 452
Query: 259 REWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIG 318
+ WMG E +AK+AAR+G FS+S+ + +++D IPDV+ + + F+DG+G
Sbjct: 453 QRWMGQVDET-IIAKHAARMGLPFSTSR-IVEINVDIGLQIPDVE----RNGHCFTDGVG 506
Query: 319 KVSAEFARKVASKCGLK---DNPPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYE 373
E R+ A G + ++ PSA Q R GG KG++A P K ++ +R SM K++
Sbjct: 507 LAGFEVMREAARALGFREGINSTPSAIQFRLGGAKGMLAFWPGRVKDHEVKMRKSMVKFK 566
Query: 374 SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 433
S L L+V+ + I ++ GI +++ +AV + L+ +
Sbjct: 567 SGLKDLNVV------------RFIMIMCANGIPEQLMIDIFNDAVASIKG-----LRERV 609
Query: 434 ALELMSPGENTNI-------LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 486
A + +S ++ I L L+ G+ + P + + L +L+ + R+ +
Sbjct: 610 ATKTLSRDDHKLISTCSEFPLLALIKAGFHEN--PMILDICSIVETRALQDLKWRARVRL 667
Query: 487 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 546
P G ++G DET TL G+VF Q + S IV+ V+V +
Sbjct: 668 PTGVFLIGIADETGTLKEGEVFCQ---------------YQESDDTPPVIVESEVIVCRA 712
Query: 547 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI- 605
P LHPGDVR AV+ P L H+ + +VF +G R PN G DLDGD DEL
Sbjct: 713 PALHPGDVRRAFAVDNPYLRHLKNVLVFSVQGERDLPNMLGGGDLDGDAPQGFPSDELYG 772
Query: 606 -PPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKAR 664
P D T Q E T+ ND LG + N H +D E +
Sbjct: 773 SSSATGPKGDSTAPQR---------EFCSVMVTDDSQNDVLGQVDNCHLARSDWEDKGPF 823
Query: 665 SEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEK-PDKPTYESQNVIGKLFR 722
CL+L+E S AVDFPKTG A + P + K +PDFM+K K TYESQ ++G LFR
Sbjct: 824 HPDCLELSEIHSTAVDFPKTGQAAILDPSMRPKLWPDFMDKDATKKTYESQKILGILFR 882
>gi|392567096|gb|EIW60271.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1228
Score = 242 bits (617), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 194/637 (30%), Positives = 312/637 (48%), Gaps = 66/637 (10%)
Query: 137 DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS 196
D G H + TP+RV GP ++VSNRV+R F D+F+R+ F DED L
Sbjct: 421 DMGKFQCHHITFTPTRVILEGPYVSVSNRVIRQFAGFEDHFVRVDFRDED-------RLQ 473
Query: 197 PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF-----ASRY 251
R + D T T + R+ L++G +G R++EFLA+SSS LRE + W ++
Sbjct: 474 YRWAREVDGT-TLLTERVGGILKHGFELGGRQYEFLAYSSSALREHAVWFMNPFEHPTQG 532
Query: 252 GLTAAEIREWMGNFRE-IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK 310
+ A IR+ +G+F I+ +KYAARL Q+F+++ ++S+ D+ E + D++ E +
Sbjct: 533 FVCAQRIRDSLGDFTNVIKQPSKYAARLAQAFTATDPSVSISRDQWEEMEDLESE--QED 590
Query: 311 YVFSDGIGKVSAEFARKV-ASKCGLK------DNPPSAFQIRYGGYKGVVAADP-TSSKK 362
Y+F+DG+G +S E + + C K D+ P A+QIR+ G+KGVV D K
Sbjct: 591 YLFTDGVGTISQELGDMIWEALCTAKESLRRVDHTPHAYQIRFLGFKGVVVIDKRLKGIK 650
Query: 363 LSLRDSMRKYE---SELTKLDVLAW-SKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAV 418
+ LR SM K+E ++ +++ W + +LN+ LI +L G+ + F K Q A
Sbjct: 651 MRLRPSMNKFEVPDMDIAPIEIARWFDRPGTSYLNKALIMILEDRGVEQKAFLKLQEMAA 710
Query: 419 RQLDAILTDPLKAQEALELMSPGENTNI---LKELLICGYKPDAEP----------FLSM 465
Q+ L+ + G++ NI LK L G EP FL
Sbjct: 711 AQITTASDTITSTTLLLKAHNLGQSFNIPFVLKALRAAGLGMRGEPDSPAGDLGDTFLRS 770
Query: 466 MLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL---NYGQVFVQISGAGYRQLHGE 522
+L + L +++ RI IP+ ++G DE VF+ G Y + E
Sbjct: 771 LLIFAQHHILRDIKHGARIPIPDSYLLVGVADEGPVYEKEGVEDVFMLQEGQIYACIQNE 830
Query: 523 SSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA------LHHMVDCVVFPQ 576
+ + ++G V ++++P +HPGDV+ + A+ P + + VV P
Sbjct: 831 AD-------EKPVYLKGTVSISRSPVVHPGDVQRVWAIGEPPAGKECFFRGLKNVVVLPS 883
Query: 577 KGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQL--DHDVQIEDVEE 634
G R + G DLDGD+Y + D LIP + P Y + L D ++D+ +
Sbjct: 884 VGKRSLASMLGGGDLDGDLYSIIKYDPLIPIEHAEPGSYVSVGTRSLPDGRDSTVDDICD 943
Query: 635 YFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEI--PP 692
+ YI +D LG++++ H + AD+ CL+LA S AVD+PK GVP +I P
Sbjct: 944 FIVEYINSDVLGLLSDRHLIIADQSKDGTSDPACLELARLCSQAVDYPKNGVPVDIFDSP 1003
Query: 693 HLYVKEYPDFMEKPDKPT-----YESQNVIGKLFRAV 724
L ++E PD+ + D Y S +G+LFR++
Sbjct: 1004 KLLIREKPDWKKAEDSDPRDTDYYFSSRALGELFRSI 1040
>gi|281205109|gb|EFA79302.1| hypothetical protein PPL_07720 [Polysphondylium pallidum PN500]
Length = 3481
Score = 242 bits (617), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 180/566 (31%), Positives = 283/566 (50%), Gaps = 59/566 (10%)
Query: 136 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 195
L+ ++ + VTPSR+ F P + +NR +R F D FL + +E + S D
Sbjct: 1135 LNANFCWIKKAYVTPSRILFQRPLMVQTNRAIRLFGPD--RFLMVQITEETISD--SIDY 1190
Query: 196 SPRGSSATDITRTRIYTRILSTLRNGILI-GDRKFEFLAFSSSQLRESSAWMFASRY--- 251
P S +L L +GI + G ++ FL +S+SQLR+++ W +
Sbjct: 1191 QPLISKL-----------MLDKLIDGIAVAGYGQYHFLGYSNSQLRKNTCWFYCPDAIDS 1239
Query: 252 ---GLTAAEIRE-WMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIG 307
+ ++++ +G+ +Y L F S+ +L + + I +PDV
Sbjct: 1240 LDDAPSLDDVKQILIGDTSIYTEPRQYLRSLSLVFPSTTPSLLIPAEHIHEVPDVVS--A 1297
Query: 308 KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRD 367
T +FSDGIG + A +V L + AFQIR GYKGVV PT + LR
Sbjct: 1298 NTGQIFSDGIGYIGKRVALQVIEFASLPEET-CAFQIRIAGYKGVVTIHPTIDDGIYLRP 1356
Query: 368 SMRKYESELTK-----LDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD 422
SM+K++++LT+ L++++ + PC LNRQ+I+LLS LG+ D+ F + Q+EA+ L
Sbjct: 1357 SMKKFQADLTQQHNCILEIISINGDNPCHLNRQVINLLSGLGVPDQYFLRLQKEALMDLA 1416
Query: 423 AILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT 482
+L +P ++ E + P T I KE L ++P + ++ + E K
Sbjct: 1417 DLLHNPAESIRCSEDL-PWLRT-IEKEDL------RSDPMIRSLVHLVYQKSIAEYSDKC 1468
Query: 483 RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVV 542
I I NG++++G LDET L GQV++ I Y +G+S ++QG V
Sbjct: 1469 FIPIANGKTIIGVLDETGLLEAGQVYINI----YNTKNGQS-----------MVIQGAVA 1513
Query: 543 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDD 602
V KNPCLHPGDVR+L+ ++ L H+ + VVF +G P +CSGSDLDGD YF+C+D
Sbjct: 1514 VCKNPCLHPGDVRILQGTDIELLSHLKNVVVFSARGDNPDFKKCSGSDLDGDRYFICYDP 1573
Query: 603 ELIPPQQDPPMDYTPAQSMQLDHDVQIED--VEEYFTNYIVNDSLGIIANAHTVFADREP 660
E+I + DY +++ + I + + I +LG IA +H +DR
Sbjct: 1574 EVISTVRQYE-DYHYEDPIKVKQTIPINQSTILAQYLKSIDKGTLGKIALSHLAVSDR-- 1630
Query: 661 RKARSEPCLQLAEKFSIAVDFPKTGV 686
+ L+ + SI VD PKTGV
Sbjct: 1631 LTPLDPLAIALSIQHSIEVDSPKTGV 1656
>gi|308469043|ref|XP_003096761.1| hypothetical protein CRE_23681 [Caenorhabditis remanei]
gi|308241452|gb|EFO85404.1| hypothetical protein CRE_23681 [Caenorhabditis remanei]
Length = 1721
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 235/881 (26%), Positives = 384/881 (43%), Gaps = 189/881 (21%)
Query: 138 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 197
+G V +V +TP+R+ F PE ++NR + D +R +F D++ K+ L
Sbjct: 475 EGYRKVRKVILTPTRIIFLAPETIMANRAINGADHDGTRIIRATFRDDNFQKMRYNQL-- 532
Query: 198 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTA-- 255
R + R L+ LR+G +I R F +LA S+SQ+R+ A+ F R+ T
Sbjct: 533 ---------RDLLEERTLNHLRDGFVIYGRGFSYLASSNSQMRDGGAY-FMERWNKTQLA 582
Query: 256 --------------------AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDE 295
+ R+ +G F + ++ K ARLGQ F+ ++ V +
Sbjct: 583 EYKERYPRIRFPDPSFKPKIIDYRKKLGKFSKTGSIPKAMARLGQCFTQARRCDGVEICL 642
Query: 296 IEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAA 355
+ V G +Y F+DG+G +SA A K+ +K PSA+QIR+ G KG++A
Sbjct: 643 QDYTMIVDAVGGAGQYKFTDGVGCISARLAAKICQSISIK-CLPSAYQIRFRGLKGMLAI 701
Query: 356 DPTSSK-----------------------------KLSLRDSMRKYESELTK-----LDV 381
+P+ + K R S K+ S K +++
Sbjct: 702 EPSIDEIADYFLNIYRKGFMIKESIESADLEPYTFKCLFRGSQLKFHSSRGKVEEWPIEM 761
Query: 382 LAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL-----------K 430
+ WS P LN+ I++L + + K + +++ +L+ + +
Sbjct: 762 VKWSSPTPVTLNKPFINILDQVSAMQSL--KCHKRVTARIEELLSMEMVNYSKWIVNEEQ 819
Query: 431 AQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN-- 488
+ LE M + L+ G+ AEPF +++ S + L K +I IP+
Sbjct: 820 CRNRLEGMPRRVHFATLERKY--GFVLSAEPFFRSIVKAAIDSSMSRLLRKLQIPIPSHL 877
Query: 489 GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSL--FSSSRSRQRFIVQGLVVVAKN 546
GRS+ G +DET L YGQVFV+ + + +S L F ++ + G V+V K
Sbjct: 878 GRSVFGVVDETGQLQYGQVFVRYT----ENVDNKSPLKDFGTT-------LTGKVLVTKF 926
Query: 547 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIP 606
P L GDVR+ +AV++P L+H+ D +VFPQ G R P+E +GSDLDGD Y V WD EL
Sbjct: 927 PSLCEGDVRMYEAVDIPELYHLKDVIVFPQTGPRSQPDEMAGSDLDGDEYAVIWDAELFF 986
Query: 607 PQQDPPMDYT------PAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREP 660
+ +P Y+ P S ++DH + + ++ Y+ + +G+ + H +D+
Sbjct: 987 ERNEPAFAYSSEKPEVPFTSSEMDHKMNL-----FYAEYMKQEDVGVTSTNHLHQSDQ-- 1039
Query: 661 RKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLY----------VKEYPDFME-KPD-- 707
S+ C +A K ++A+D+ K+GV PP L + E P+ E +PD
Sbjct: 1040 FGINSDVCNAIAVKNAMALDYSKSGVA---PPPLTSEWTFNHVTGINEPPERSERRPDFA 1096
Query: 708 ------KPTYESQNVIGKL---FRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDH 758
+Y+S ++G+L R V D+ +S K+V DP + +E +
Sbjct: 1097 ANRYNGNVSYQSSRLLGQLHRELRCVNDVLASSSA-----KQVP-IEIDPLLVWKRWEKY 1150
Query: 759 IDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRR-------DAEAI-- 809
+ A Y+ +L ++MD +GI TEAEI +G ++ ++R + E I
Sbjct: 1151 AEVARVQMIRYNGQLRSIMDTFGINTEAEIFSGCYREIRNRHSEREQDDMSLYNTETIIE 1210
Query: 810 ---GMAVRALRKEARAWFKEKSG-------------SDTEDDA------------YAKAS 841
R R++ A F E SD E D AKA
Sbjct: 1211 TQMTEIYRKYREQFFAEFLEGENAYMRLTEVENSRMSDDEKDVLRRVCREPNNKMMAKAV 1270
Query: 842 AWYHVTYHPDYWGCYNQGMNR-DHFLSFPWCVYDRLVEIKK 881
A+Y V CY D LSF W YD L +++
Sbjct: 1271 AYYRV--------CYAAAQKTGDQKLSFAWIAYDILNTVRQ 1303
>gi|409079686|gb|EKM80047.1| hypothetical protein AGABI1DRAFT_72859 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1258
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 215/829 (25%), Positives = 382/829 (46%), Gaps = 110/829 (13%)
Query: 50 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVD-----PYRAPVSISCIEHALDKLYHL 104
+ P+ + F + L+ NG + L+S R+ P R + ++
Sbjct: 336 LRFPWPVGFHLESLLHNGRLNTSELESLLPRVRKLCQEHPQRDHAYVDHFLRKYGEVLQD 395
Query: 105 KECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSN 164
+ P+ RKY+ P +LD + V TP+R+ GP SN
Sbjct: 396 RGPRVSPTDCFEQVKRKYV-------PPKATLD--IFRCRHVTFTPTRMLMEGPYATQSN 446
Query: 165 RVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILI 224
R++R + + F+R+ F DED L R + D + + R+ + L++G I
Sbjct: 447 RIIRQYSGYEEFFIRVDFRDED-------RLQYRWNREVD-GASFVRERVGTILKDGFTI 498
Query: 225 GDRKFEFLAFSSSQLRESSAWMFAS------RYG-LTAAEIREWMGNFRE---IRNVAKY 274
R+FEFLA+SSS LRE + W +YG + + +IRE +GNF+ ++ +KY
Sbjct: 499 AGRQFEFLAYSSSALREHAVWFMCPFEHHDPKYGRVDSMKIREQIGNFKGTDLMKQPSKY 558
Query: 275 AARLGQSFSSSKETLSVHMDEIEIIPDVK---IEIGK-TKYVFSDGIGKVSAEFARKV-A 329
AARL Q+F++++ ++S+ DE E I D+K E GK Y+F+DG+G +S K+ A
Sbjct: 559 AARLAQAFTATEASVSIKRDEWEEIEDIKPPNFEDGKPNPYLFTDGVGSISKSLGDKIWA 618
Query: 330 SKC------GLKDNPPSAFQIRYGGYKGVVAADPT-----SSKKLSLRDSMRKY---ESE 375
C G PSA+QIR+ GYKGVVA D + K + LR+SMRK+ +
Sbjct: 619 ELCSNRRDHGENSIQPSAYQIRFLGYKGVVAVDEQLDKTGAGKHMRLRNSMRKFLVVNDD 678
Query: 376 LTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEA 434
+ +++ A++ C+LNR L+ LL LG+ + F Q + V + I +
Sbjct: 679 VAPIEIAQAFAHPNRCYLNRPLVMLLEDLGVNVDAFLTLQDKEVAKARTIHDSIDRFLSV 738
Query: 435 LELMSPGEN---TNILKELLICGYKPDAE---------PFLSMMLQTFRASKLLELRTKT 482
+ G + + ++K+L G + +++ PFL + + + +++
Sbjct: 739 ISEHGLGRSFRFSYLVKQLQGLGLEINSKDPDKLNVDTPFLKQVREVAMMDVMRDIKHSA 798
Query: 483 RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLF-----SSSRSRQRFIV 537
RI +P+ ++G DE G +V AG+ ++ F S + +
Sbjct: 799 RILVPDSHLLVGIADE------GPAYV---SAGFENVYCLPPGFIYACVQESPDGKAEWL 849
Query: 538 QGLVVVAKNPCLHPGDVRVLKAVNVPA------LHHMVDCVVFPQKGMRPHPNECSGSDL 591
+G +V ++P H GDV+ ++A+ P H+ + +V +G R + G D+
Sbjct: 850 EGHCLVTRSPVAHIGDVQRVRAIGKPPQGKLCLFSHIKNALVMSSQGNRSLASCLGGGDV 909
Query: 592 DGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANA 651
DGD++ V + L+P + PM+Y + + + ++D+ ++ YI +D LG++++
Sbjct: 910 DGDLFQVIQYEPLLPMTYELPMEYESVGTKAITTECTVDDICDFVVEYINSDVLGLLSDR 969
Query: 652 HTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIP----PHLYVKEYPDF----- 702
+ AD+ + C++LAE S AVD+PK G+P ++ PH ++ PD+
Sbjct: 970 LLMIADQSKLGMNDKDCIRLAELCSQAVDYPKNGIPVDLNKEKLPHTLIRCKPDWHAAEV 1029
Query: 703 MEKPDKPTYESQNVIGKLFRAV-----KDIAPHTSCIRLFTKEVARRSYD---------- 747
+ + Y S +G+L+R + + + P + LF +++ D
Sbjct: 1030 VSPRETDYYRSTRALGELYRNISLTEPEPMKPVSKNFELFRDPISQVLSDRVEFYIGDLV 1089
Query: 748 -PDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIK-TEAEILTGSIM 794
P EVD + I + NY L + G K EAE++ G+I+
Sbjct: 1090 LPTTEVDQTLEDIYSRYLEELNYIRFTHTLSNTPGAKLLEAEVVAGTIL 1138
>gi|426198551|gb|EKV48477.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1258
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 200/742 (26%), Positives = 353/742 (47%), Gaps = 98/742 (13%)
Query: 132 PAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIH 191
P +LD + V TP+R+ GP SNR++R + + F+R+ F DED
Sbjct: 416 PKATLD--IFRCRHVTFTPTRMLMEGPYATQSNRIIRQYSGYEEFFIRVDFRDED----- 468
Query: 192 STDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS-- 249
L R + D + + R+ + L++G I R+FEFLA+SSS LRE + W
Sbjct: 469 --RLQYRWNREVD-GASFVRERVGTILKDGFTIAGRQFEFLAYSSSALREHAVWFMCPFE 525
Query: 250 ----RYG-LTAAEIREWMGNFRE---IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPD 301
+YG + + +IRE +GNF+ ++ +KYAARL Q+F++++ ++S+ DE E I D
Sbjct: 526 HHDPKYGRVDSMKIREQIGNFKGTDLMKQPSKYAARLAQAFTATEASVSIKRDEWEEIED 585
Query: 302 VK---IEIGK-TKYVFSDGIGKVSAEFARKV-ASKC------GLKDNPPSAFQIRYGGYK 350
+K E GK Y+F+DG+G +S K+ A C G PSA+QIR+ GYK
Sbjct: 586 IKPPKFEDGKPNPYLFTDGVGSISKSLGDKIWAELCSNRRDHGENSIQPSAYQIRFLGYK 645
Query: 351 GVVAADPT-----SSKKLSLRDSMRKY---ESELTKLDVL-AWSKYQPCFLNRQLISLLS 401
GVVA D + K + LR+SMRK+ ++ +++ A++ C+LNR L+ LL
Sbjct: 646 GVVAVDEQLDKTGAGKHMRLRNSMRKFLVVNDDVAPIEIAQAFAHPNRCYLNRPLVMLLE 705
Query: 402 TLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN---TNILKELLICGYKPD 458
LG+ + F Q + V + I + + G + + ++K+L G + +
Sbjct: 706 DLGVNVDAFLTLQDKEVAKARTIHDSIDRFLSVISEHGLGRSFRFSYLVKQLQGLGLEIN 765
Query: 459 AE---------PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFV 509
++ PFL + + + +++ RI +P+ ++G DE G +V
Sbjct: 766 SKDPDKLNVDTPFLKQVREVAMMDVMRDIKHSARILVPDSHLLVGIADE------GPAYV 819
Query: 510 QISGAGYRQLHGESSLF-----SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 564
AG+ ++ F S + ++G +V ++P H GDV+ ++A+ P
Sbjct: 820 ---SAGFENVYCLPPGFIYACVQESPDGKAEWLEGHCLVTRSPVAHIGDVQRVRAIGKPP 876
Query: 565 ------LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPA 618
H+ + +V +G R + G D+DGD++ V + L+P + PM+Y
Sbjct: 877 QGKLCLFSHIKNALVMSSQGNRSLASCLGGGDVDGDLFQVIQYEPLLPMTYELPMEYESV 936
Query: 619 QSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIA 678
+ + + ++D+ ++ YI +D LG++++ + AD+ + C++LAE S A
Sbjct: 937 GTKAITTECTVDDICDFVVEYINSDVLGLLSDRLLMIADQSKLGMNDKDCIRLAELCSQA 996
Query: 679 VDFPKTGVPAEIP----PHLYVKEYPDF-----MEKPDKPTYESQNVIGKLFRAV----- 724
VD+PK G+P ++ PH ++ PD+ + + Y S +G+L+R +
Sbjct: 997 VDYPKNGIPVDLNKEKLPHTLIRCKPDWHAAEVVSPRETDYYRSTRALGELYRNISLTEP 1056
Query: 725 KDIAPHTSCIRLFTKEVARRSYD-----------PDMEVDGFEDHIDDAIYHKGNYDYKL 773
+ + P + LF +++ D P EVD + + NY
Sbjct: 1057 EPMKPVSKNFELFRDPISQVLSDRVEFYIGDLVLPTTEVDQTLEDTYSRYLEELNYIRFT 1116
Query: 774 GNLMDYYGIK-TEAEILTGSIM 794
L + G K EAE++ G+I+
Sbjct: 1117 HTLSNTPGAKLLEAEVVAGTIL 1138
>gi|330798142|ref|XP_003287114.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum]
gi|325082892|gb|EGC36360.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum]
Length = 2341
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 221/782 (28%), Positives = 349/782 (44%), Gaps = 99/782 (12%)
Query: 117 DQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN 176
DQYR + +S S +V V VTPSR+ F P++ +NR LR F + N
Sbjct: 1163 DQYRHKINEKSTKSKE-------FAFVKEVFVTPSRIIFKEPKLERTNRALRRFGSE--N 1213
Query: 177 FLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSS 236
F+ + +E L+ + L+P+ +YT I +GI + K+ ++ S+
Sbjct: 1214 FILLKVANESLEPLRG--LNPKHP---------LYTTIQKYFDSGIELSGTKYYYVGNSN 1262
Query: 237 SQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEI 296
SQ + SAW + IR W + + K+A L F+++ + +
Sbjct: 1263 SQHSDFSAWFVNDLAHVFL--IRNWSQDQSLVMQPRKFARGLSLMFTTTSPSFVIPQRNY 1320
Query: 297 EIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKG-VVAA 355
II D+ I G F++G G + + +R++ K + A+QIR GG KG +V +
Sbjct: 1321 YIIDDI-ISNGHN---FTEGCGFIGKDLSRRINELFHYK-SSTCAYQIRIGGAKGMLVVS 1375
Query: 356 DPTSSKKLSLRDSMRK----YESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFE 411
+ + +R S K + E L++ + S C LNRQ+I+LLS G+ D +F
Sbjct: 1376 ETVDPDGVYIRKSQIKTKPAHYDEHRTLEICSISTSSNCKLNRQVIALLSCKGVKDHVFY 1435
Query: 412 KKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFR 471
Q + L + L D +++ L+ N N ELL + F+ +L T
Sbjct: 1436 SIQDRYMNYLASTLNDVEYSRKVLDEFFKDLNDN---ELL-------QDNFIRRILITHY 1485
Query: 472 ASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRS 531
+ + K+ + I R+++G D TR L +F+QI S
Sbjct: 1486 KLSIERAQQKSHLDIEKSRNLLGVTDPTRLLPADCIFIQIEQE------------EEDGS 1533
Query: 532 RQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDL 591
R ++G VVV KNPC HPGD+R+L+AVN+ ALHH+ D +VF G P+ E SGSDL
Sbjct: 1534 RHYVPLKGDVVVTKNPCTHPGDLRILRAVNIEALHHLKDVIVFSTYGNVPNFKEISGSDL 1593
Query: 592 DGDIYFVCWDDEL------IPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSL 645
DGD YFVC+D++L IP D P Q++ D + V +Y N + +
Sbjct: 1594 DGDRYFVCFDNDLMINGNSIPYLGDNLTKEDPPQNVYNDPKLL---VGQYLAN-VEKQKI 1649
Query: 646 GIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPP----HLYVKEYPD 701
G + NAH +D A S ++L+ + +D KTGV E+P HL YP
Sbjct: 1650 GTLYNAHLAISDY--YGADSVHAIELSIECFKEIDAVKTGVHGEVPRNIQFHLNHFGYPH 1707
Query: 702 FMEKPD---KPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDH 758
+M + D K Y+S+ V G +F ++ + I F E+ S + DG+ D+
Sbjct: 1708 YMRRDDNSPKKYYQSKKVQGLMFDQLEQLV----YIGDFLPEI---SVNEKNLKDGYNDY 1760
Query: 759 IDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRK 818
++ A Y K+ +L+ YG + E +L G + + S + + I RA+
Sbjct: 1761 LNSASILYQEYKNKINSLLQRYGGEDEESLLVGFMDQNFSSDYSKNIQDDIKENYRAIID 1820
Query: 819 EARAWFKEKSGSDTEDDAY----------AKASAWYHVTYHPDYWGCYNQGMNRDHFLSF 868
+ F + GS D+ K SAWY+V+Y N D L F
Sbjct: 1821 SFKVEFLKDFGSGIIDEQVIKNEHYGEVEKKISAWYYVSY---------SDKNEDRALGF 1871
Query: 869 PW 870
W
Sbjct: 1872 YW 1873
>gi|393244711|gb|EJD52223.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1372
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 213/740 (28%), Positives = 351/740 (47%), Gaps = 100/740 (13%)
Query: 136 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 195
LD + H V VTPS V GP +SNRVLR + D F+R+ F DE+ +
Sbjct: 567 LDRSVFLCHHVGVTPSGVRLEGPFPVLSNRVLRKYPDHQDCFIRVHFTDEEQYQFRWD-- 624
Query: 196 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG 252
R R R+ L+ G+ + R FEFLA+S L+E + W F + G
Sbjct: 625 --REVDGVAFVRGRVG----GVLKQGLELAGRYFEFLAYSFGALKEHTVWFVTPFIDQAG 678
Query: 253 --LTAAEIREWMGNFRE-IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKT 309
+TA IR+ +G+F + I + + Y ARL Q+FS++ ++ V E+E IPD+ G+
Sbjct: 679 KSVTAESIRDSLGDFSKVIYHPSLYGARLSQAFSATYPSVRVEASEVEQIPDIYDPSGEN 738
Query: 310 KYVFSDGIGKVSAEFARKV-----ASKCGLKDNP-PSAFQIRYGGYKGVVAADPT-SSKK 362
V SDG S + A+ + K + NP P A+QIR GG KG++ DPT +K
Sbjct: 739 --VMSDGCAPCSTQLAKDIDDVLMEGKSRYEYNPVPKAYQIRIGGSKGMIYVDPTLPGRK 796
Query: 363 LSLRDSMRKYES-ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR-Q 420
L LR SM K+++ + ++V + +LNR L+ LL LG+ F++ Q + +
Sbjct: 797 LLLRPSMNKFDAPDSLDIEVSNIPRASHMYLNRPLVMLLEDLGVRLSTFKQLQEDTMAAD 856
Query: 421 LDAI--LTDPLKAQEALELMSPGENTNILKEL--LICGYKPDAEPFLSMMLQTFRASKLL 476
LDA + + + L + +L EL + G + D + +L + ++
Sbjct: 857 LDAARHIGRFIIGMNQIGLGKRFYLSYVLGELADMEFGLRDDCQGDFGSLLDDYWYHGIV 916
Query: 477 E---------LRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFS 527
+ ++ + RI +P+ +++G LDE + L GQ+ + Y
Sbjct: 917 KSTLWDQFRKIKYQARIRVPDSWTLVGVLDEHQILQTGQIMAYVQNEDYPN--------- 967
Query: 528 SSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA-----LHHMVDCVVFPQKGMRPH 582
+ ++G V++ ++P +HPGDV++++AV P + + +CV+F G R
Sbjct: 968 ------GYFLKGPVLICRSPVVHPGDVQMVEAVVPPDGSILDVERLPNCVIFSALGARSI 1021
Query: 583 PNECSGSDLDGDIYFVCWDDELIPPQQDPPMDY-TPAQSMQLDHDVQIEDVEEYFTNYIV 641
P+ G DLDGD++ V Q P Y TP + D + I+DV ++ YI
Sbjct: 1022 PSCLGGGDLDGDLFHVSEYPYFRIKQPYLPAAYPTPERRKLKDREATIDDVADFVVEYIN 1081
Query: 642 NDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIP----PHLYVK 697
+D LG++A H V AD+ P R+ C+QLAE S AVD+ KTG+P +P PH
Sbjct: 1082 SDVLGLVATTHLVIADQHPDGVRAHKCMQLAELHSTAVDYAKTGIP--VPRMRIPHYEFP 1139
Query: 698 EYPDF-MEKPDKPT----YESQNVIGKLFRAV---------KDIAPHTSCIRLFTKEVAR 743
PD+ ++ D PT YESQ +G L+R V K++ HT ++++
Sbjct: 1140 AKPDWKADEVDDPTSADYYESQRALGHLYRGVGYTSADDLEKNLGKHTRTAEDVDRDISS 1199
Query: 744 RSYDPDMEVDGFEDHI----DDAIYHK------GNYDYKLGNLMDYYGIK-----TEAEI 788
+ + E+H+ D ++H+ Y Y+L + + +K TE E+
Sbjct: 1200 KIQ------ERIEEHVDLETDPPVFHEELMKLYQQYVYELRRISTLHSLKAIYPLTEIEV 1253
Query: 789 LTGSIMKMSKSFTKRRDAEA 808
+ G I+ + +R++ A
Sbjct: 1254 MLGVILGKTSQPKRRKELAA 1273
>gi|389746475|gb|EIM87655.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1279
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 225/752 (29%), Positives = 349/752 (46%), Gaps = 90/752 (11%)
Query: 133 AISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS 192
AIS D + + + +TP GP ++ SN VLR F D FLR+SF DE+ +
Sbjct: 469 AISPSDAIFDSYTLVLTPLSRILEGPLLDQSNSVLRRFGHH-DCFLRLSFQDENHTPLRR 527
Query: 193 TDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG 252
S G+S ++ RTR S + +GI I R F+FL +S S L++ S MF S +
Sbjct: 528 DPTS--GTSIAELLRTRFR----SVMVDGIRIAGRYFQFLGYSMSGLKDHSI-MFMSSFH 580
Query: 253 ------LTAAEIREWMGNFREIRNV-AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE 305
+TA IR +G+F I N A AAR Q+FS+S ++++ +EI I D +
Sbjct: 581 DERGELMTAEGIRRTLGSFNHISNKPALLAARWSQAFSASDPSVTLDPNEIRRIDDRRSP 640
Query: 306 IGKTKYVFSDGIGKVSAEFARKV-------ASKCGLKDNPPSAFQIRYGGYKGVVAADPT 358
G +F+DG G +S AR V + + PS FQIR GG KGV+ DPT
Sbjct: 641 SGS---LFTDGCGTISPLLARDVWKFLQHRRRRAAKMRSVPSCFQIRIGGAKGVLFQDPT 697
Query: 359 SS---KKLSLRDSMRKYES-ELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEK 412
+ + + LR S K+E+ E LD+ A + +P FLNR LI LL LG+ D++F
Sbjct: 698 LAGLGRVVCLRPSQTKFENPEALTLDI-ASTSARPIRMFLNRPLILLLEFLGVQDDVFLS 756
Query: 413 KQREAVRQLDAILTDPLKAQEALELMSPGENTNI--LKELLICGYKPDAEPFLSMMLQT- 469
Q++A ++ A + G + + L LI K D + Q
Sbjct: 757 LQKDATAAVERARDSFTDAAKLFSHHGFGSSFRLASLFNNLISELKLDDSDLQELGCQLI 816
Query: 470 -----FRASKLL-ELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGES 523
+ A+ +L E++ + RI + +++G DE L G+++ +
Sbjct: 817 TRTVEYAATHVLREIKFRARIPVHGSWTLLGVSDEWSCLREGEIYATVR----------- 865
Query: 524 SLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHP 583
R+ ++G V++ ++P +HPGDV+ + AV P L H+ + VVF +G R P
Sbjct: 866 ----DERTGTYVPIEGRVLITRSPQIHPGDVQFVNAVRHPKLEHLNNVVVFSCEGDRSLP 921
Query: 584 NECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVND 643
+ G DLDGDIY + + L P + Y P H IED+ ++ +YI D
Sbjct: 922 SMLGGGDLDGDIYNLILNPNLFPTRTSVAGAYEPLPHKVTPHPCTIEDIADFVIDYIEAD 981
Query: 644 SLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPA---EIPPHLYVKEYP 700
+G I+ H AD +P+ + CL LAEK S AVDF KTG P +P ++ P
Sbjct: 982 LVGYISILHLRIADLDPKGPSCDECLLLAEKASHAVDFQKTGTPVNFDNLPRAGRLR--P 1039
Query: 701 DFME------KPDKPTYESQNVIGKLFRAV---KDIAPHTSC---IRLF--TKEVARRSY 746
DF+ + Y S V+G L+R V + A H I+++ +ARR+
Sbjct: 1040 DFLAGEVVEPSAESSFYPSDKVLGVLYRNVPLKNEDAIHEESVFGIKIYESVTRIARRAE 1099
Query: 747 D----PDMEVDGFEDHIDDAIYHK-GNYDYKLGNLMDYYGIK-------TEAEILTGSIM 794
P +D + D + D ++ Y +L + + TE E+++G+I
Sbjct: 1100 VRFGLP--SIDDYPDELLDEMHATMMAYSEQLTEIAKAHTQSRVPGDYLTEPELVSGTIQ 1157
Query: 795 KMSKSFTKRRDAEA-IGMAVRALRKEARAWFK 825
KRR+ A + + R L K R F+
Sbjct: 1158 GKWHDHRKRRETVASMELQTRELSKSIRQEFR 1189
>gi|342319755|gb|EGU11702.1| RNA-directed RNA polymerase 2 [Rhodotorula glutinis ATCC 204091]
Length = 1904
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 189/615 (30%), Positives = 295/615 (47%), Gaps = 64/615 (10%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
V +V T +R GP + +N ++R + R + F+ ++ ED GSS
Sbjct: 1106 VRQVTFTATRALLFGPYLGDTNSIVRAYARP-ELFVSVAVRHED------------GSSL 1152
Query: 203 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL------TAA 256
D + I +R R+G +G R + FLA+SSS L+ SS + F S + L T
Sbjct: 1153 RDRDDSLIASRFSPLFRDGFELGGRSWRFLAWSSSGLKSSSCF-FMSPFRLDDETLITPT 1211
Query: 257 EIREWMGNFREIRNV---AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 313
I +G+F AKY AR+ Q+FSSSK +L++ D++ I D+ G F
Sbjct: 1212 FIHRTIGDFTGSETALIPAKYMARIAQAFSSSKPSLTLRPDQMLSIEDITAPDGS---CF 1268
Query: 314 SDGIGKVSAEFARKVASKCGLK----DNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDS 368
SDG+G +S A V K G+K + PP+ FQ R GG KG + DPT K ++LR S
Sbjct: 1269 SDGVGLISPSLANDVVEKLGIKLGKEERPPTCFQFRLGGAKGTLQVDPTLEGKVVALRPS 1328
Query: 369 MRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREA---VRQLDAIL 425
K+ S LT L++ + P +LNR LI+LL LGI ++F K Q +A +R+ A L
Sbjct: 1329 QVKFRSTLTSLEIAGTFEAGPGYLNRPLITLLENLGIPADVFLKLQAKATAKIRKSRASL 1388
Query: 426 TDPLKAQEALELMSPGENTNILKELLICGYKPDA---EPFLSMMLQTFRASKLLELRTKT 482
+K L S + L L DA PF++ L L +++
Sbjct: 1389 PSAVKLPRDWSLASGTRFVSALNLLAKDQATRDAAFANPFVARCLDASVVHALRDIKYLA 1448
Query: 483 RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVV 542
RI +P +++G +D L +++ +IS + G + +QG +
Sbjct: 1449 RIPLPGCYNLVGVVDVDGCLAQDEIYARIS-----RPDGSTEY-----------LQGTIA 1492
Query: 543 VAKNPCLHPGDVRVLKAVN-VPA-----LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIY 596
++++P HPGD R+++AV +P + + +CVVFP G R P+ +G DLDGD+Y
Sbjct: 1493 ISRSPTNHPGDCRLVRAVGKLPKGAGERIRGLTNCVVFPVHGPRSLPSMLAGGDLDGDVY 1552
Query: 597 FVCWDDELIPPQQD---PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHT 653
+ + + P D P Y A +++LD +V +ED E+F YI D G++A
Sbjct: 1553 LLLTEASGLVPSPDRIAEPAAYDAAPTVKLDREVSVEDGGEFFFKYITQDRTGLVATRQL 1612
Query: 654 VFADREPRKARSEPCLQLAEKFSIAVDFPKTG--VPAEIPPHLYVKEYPDFMEKPDKPTY 711
+ AD CL+LA+ S VD K+G V P + + PDF+ +Y
Sbjct: 1613 LLADSHAEGLFHPDCLKLAQLHSNCVDAAKSGSFVQQHAVPRVTQRGLPDFLTNDAPDSY 1672
Query: 712 ESQNVIGKLFRAVKD 726
S +G L+RA+ +
Sbjct: 1673 RSSKALGHLYRAIDE 1687
>gi|395333779|gb|EJF66156.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1220
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 196/666 (29%), Positives = 328/666 (49%), Gaps = 75/666 (11%)
Query: 120 RKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLR 179
+K+ T RS + D G + V TP+R+ GP ++ SNRV+R F D+FLR
Sbjct: 398 QKWGTLRSDGQMTERARDSGKFKCYHVTFTPTRILLEGPYVSQSNRVIRQFAGYEDHFLR 457
Query: 180 ISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL 239
+ F DED L R + D T T + R+ TL++G +G R FEFLA+S S L
Sbjct: 458 VDFRDED-------RLQYRWAREVDGT-TLLEERVGGTLKHGFDLGGRHFEFLAYSQSAL 509
Query: 240 RESSAWMF-----ASRYGLTAAEIREWMGNFREIRNV-AKYAARLGQSFSSSKETLSVHM 293
RE + W +R + IR+ +G+F ++ + +KYAARL Q+F+++ ++S+
Sbjct: 510 REHAVWFMNPFDHPTRGYVDGQRIRDSLGDFSKVIDAPSKYAARLAQAFTATDPSVSISH 569
Query: 294 DEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV-ASKCGLKDN------PPSAFQIRY 346
D+ E + D +G+ Y+F+DG+G +S + + + C K++ PSA+QIRY
Sbjct: 570 DQCEEMSD----MGEEPYLFTDGVGTISPKLGDMIWEALCTAKEDLRRHERKPSAYQIRY 625
Query: 347 GGYKGVVAADP-TSSKKLSLRDSMRKYES---ELTKLDVLAW-SKYQPCFLNRQLISLLS 401
GYKG+V D K+ LR SM K+++ ++ +++ W +LNR L+ +L
Sbjct: 626 LGYKGMVGIDERLEGVKMRLRPSMNKFDALDKDVAPIEIARWFDNPGTSYLNRSLVMILE 685
Query: 402 TLGIWDEIFEKKQREAVR-------QLDAILTDPLKAQEALELMSPGENTNILKELLICG 454
G+ +F+K Q +AV +D +T L L P IL+ L G
Sbjct: 686 DRGVDKAVFQKLQDKAVEAVVTASDSIDGTVTLLKTHNIGLSLGLP----YILRGLKAIG 741
Query: 455 YKPDA---------EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYG 505
+ FL ++ +A L +++ RI IP+ ++G DE G
Sbjct: 742 MGMKEKEVTTGTLNDTFLYSLIGYAQAHILRDMKHSARIPIPDSYLLVGLADE------G 795
Query: 506 QVFVQISGAGYRQLHGESSLFSSSRSR---QRFIVQGLVVVAKNPCLHPGDVRVLKAVNV 562
+ + G E+ +F+ ++ + +QG+VV++++P +HPGDV+ + A+
Sbjct: 796 PAY-EAEGVQNVFCLKENQIFACVQNETDDEPTYLQGVVVISRSPVVHPGDVQRVYAIGK 854
Query: 563 PA------LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYT 616
P ++ + VV P G R + G DLDGD+Y V L+P + P Y
Sbjct: 855 PPDDKVCFFRNLRNVVVLPSVGKRSLASMLGGGDLDGDLYSVIKYSPLLPTEHADPGSYE 914
Query: 617 PAQSMQLDHDVQ--IEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEK 674
P + +L Q ++D+ ++ Y+ +D LG++++ H + AD+ CL LA+
Sbjct: 915 PVGTKRLPDGRQSTVDDICDFVVEYLNSDVLGLLSDRHLIIADQSREGTNDPACLDLAQL 974
Query: 675 FSIAVDFPKTGVPAEI--PPHLYVKEYPDF-MEKPDKPT----YESQNVIGKLFRAVKDI 727
S AVD+PK G+P +I P L ++ PD+ M + + P Y S +G+LFR++
Sbjct: 975 CSQAVDYPKNGIPVDIHDSPRLLIRFKPDWKMAEDNDPRDTDYYLSPRALGELFRSITIP 1034
Query: 728 APHTSC 733
P S
Sbjct: 1035 KPKPSA 1040
>gi|299753212|ref|XP_002911846.1| calcium:hydrogen antiporter [Coprinopsis cinerea okayama7#130]
gi|298410195|gb|EFI28352.1| calcium:hydrogen antiporter [Coprinopsis cinerea okayama7#130]
Length = 1681
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 236/904 (26%), Positives = 402/904 (44%), Gaps = 133/904 (14%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVS--------------ISCIEH 96
ALP+ + F++ L+ NG + L+ L+D A + +
Sbjct: 793 ALPWHVAFQMEALLLNGLLHTKLIQD----LLDQVEALAAKHMKNNNAHYVGEVLRKFNE 848
Query: 97 ALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFC 156
L ++ E P + K+ +KPS LD G V TP+RV
Sbjct: 849 VLQSRLNIPEVQEHPLTIFENVLSKF--EYAKPS-----LDRGTFPCCHVTFTPTRVLLE 901
Query: 157 GPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILS 216
GP SNR++R + D FLR+ F DED L R D + R+ +
Sbjct: 902 GPCPTQSNRIIRKYAGFEDKFLRVDFRDED-------RLQYRWDREVD-GSVFVRDRVGT 953
Query: 217 TLRNGILIGDRKFEFLAFSSSQLRESSAWMFA--SRYGLT--AAEIREWMGNFRE---IR 269
L+ G + R FEFLA+SSS LRE + W + + G+ A IR +G+F+ ++
Sbjct: 954 VLKLGFELAGRTFEFLAYSSSALREHAVWFMSPFKKDGVIVDAESIRNSVGDFKGTELLK 1013
Query: 270 NVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVA 329
+ YAARL Q+F+++ ++ + E E + D +G+ Y+F+DG+G +S+ A ++
Sbjct: 1014 RPSMYAARLAQAFTATDPSVKIRRGEWEDVDD----LGEKPYLFTDGVGTISSALADRIW 1069
Query: 330 SKCGLKDNP-PSAFQIRYGGYKGVVAADPTSSK-----KLSLRDSMRKYESE-----LTK 378
+ G K+ P AFQIR+ GYKG+V+ D ++ LR SMRK+E++
Sbjct: 1070 AAVGRKNQRRPDAFQIRFLGYKGMVSVDKELDNHPHGIQMRLRPSMRKFENKGEEEDAEI 1129
Query: 379 LDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR---QLDAILTDPLKAQEAL 435
++S +LNR L+ LL LG E F + Q + +D L K
Sbjct: 1130 EIAQSFSSPNAAYLNRPLVMLLEDLGARKEDFLRLQNLEIADACTIDESLEQFQKFMSGH 1189
Query: 436 ELMSPGENTNILKELLICGYKPDAE--------PFLSMMLQTFRASKLLELRTKTRIFIP 487
L P +L++L G + PFL ++ L +++ RI IP
Sbjct: 1190 GLGRPFGFQYLLRKLWNLGLDLSSNKKGSSIDTPFLHLLRSVAINDVLRDIKHSARIKIP 1249
Query: 488 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG--ESSLFSSSRSRQR---FIVQGLVV 542
+ ++G DE G + + GY+ ++ E ++++ + + +QG V
Sbjct: 1250 DSYLLVGIADE------GPAYEK---RGYKNVYSLREGNIYACIQRHEDDEPTYIQGTVS 1300
Query: 543 VAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIY 596
++++P H GDV+ + A+ P A + + VV P G R + G D+DGD++
Sbjct: 1301 ISRSPVAHRGDVQRVYAIGEPPAGMFCAFRGLRNVVVLPSVGDRSLASCLGGGDVDGDMF 1360
Query: 597 FVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFA 656
V D L+P + P Y A + LD D +ED+ ++ YI +D LG++++ + A
Sbjct: 1361 SVITCDALLPSETFEPSAYESAGTKTLDRDSTVEDICDFVVEYINSDVLGLLSDRLLIIA 1420
Query: 657 DREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIP----PHLYVKEYPDF-----MEKPD 707
D+ E CL LAE S AVD+PK G+P ++ P ++ PD+ + +
Sbjct: 1421 DQSKDGFSDEACLALAELCSQAVDYPKQGIPVDLDSNDLPRTLIRCKPDWHAAEVVSPRE 1480
Query: 708 KPTYESQNVIGKLFRAV---------KDIAPH---------TSCIRLFTKEVARRSYDPD 749
Y S +G L+RAV K +AP+ + + + K + +P+
Sbjct: 1481 TDYYRSTRALGFLYRAVELKPITEEEKKLAPNKFPPLTDAISRALIPYVKTYLGAAVNPN 1540
Query: 750 ---MEVDG-FEDHIDDAIYHKGNYDYKLGNLMDYYGIK-TEAEILTGSIMKMSKSFTKRR 804
E+D F+ ++++ NY L + G+K EAE++ G+I ++K KR
Sbjct: 1541 GQFAEIDKIFQRYVNEL-----NYICITHTLSNTPGVKLLEAEVVAGTI--LAKCAQKRM 1593
Query: 805 DAEAI---GMAVRALRKEARAWFKEKSGSDTEDDAYAKA-----SAWYHVTYHPDYWGCY 856
++ I + L K+ + FK ++ S D + AW + + D +G
Sbjct: 1594 RSDRIYRMRLHSETLVKDVQKDFKGRTNSPDSLDGFITGLGRAWRAWEYSQKYNDQFGAN 1653
Query: 857 NQGM 860
+ G+
Sbjct: 1654 SFGI 1657
>gi|403358446|gb|EJY78873.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1379
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 196/715 (27%), Positives = 323/715 (45%), Gaps = 116/715 (16%)
Query: 112 SRWLTDQYRKYMTSRSKPSSPAI---SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLR 168
SR L + YR Y+ S + I + +D + R+ TP+ F + +NRV+R
Sbjct: 418 SRTLLEAYR-YLEKNSGEITLEIQNETENDNDLRQRRIYQTPTLTLFFANQREQTNRVIR 476
Query: 169 HFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 228
F++ DNF R+ +++ L K H + + + + ++ + IGD
Sbjct: 477 QFKKYKDNFFRLVLVNDQLQKFHFGSMKQK----------EMLQHMKDLMKQELYIGDSL 526
Query: 229 FEFLAFSSSQLRESSAWMFASRY--GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSK 286
+ L +S+SQL+ S WM S + I +G F K AR GQ FS++K
Sbjct: 527 AQVLNYSNSQLKNHSVWMVCSTSIPEIQPNAIISRLGTFTNEGGNLKMFARRGQCFSTTK 586
Query: 287 ETLSVHMD-EIEIIPDVKI-------------EIGKTKYVFSDGIGKVSAEFARKVASKC 332
+ D +E+I D++ + + YVF+DG G +S A ++A
Sbjct: 587 YVTKLDPDSNVEVIEDIERPKKNDPDLAQAEPDQREGNYVFTDGCGNISELLASEIAQSH 646
Query: 333 GLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCF 391
L SAFQ+R GG KGV+ P +K+ LR S K+ E L+V+ S + +
Sbjct: 647 QLM--KCSAFQVRIGGVKGVLMLKPDLDGRKVQLRKSQIKFACENWGLEVIRCSTFSQGY 704
Query: 392 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDA-ILTDPLKAQEALELMSPGEN------- 443
LNRQ+I LLS LG+ D +F A+ L+ + L ++ + + S +N
Sbjct: 705 LNRQVILLLSCLGVDDNVFLSHLHTALENLNVEKVIKNLYSRSTVFMTSKSKNRKDENEN 764
Query: 444 ---TNILKELLICGYKPD---AEPFLSMMLQTFRASKLL------ELRTK---------- 481
N +K L + P + F + QT + + + E+RTK
Sbjct: 765 KSKANEMKNELDVFFGPSKIFSPIFKHCLAQTLKQIEQVKKGLPEEMRTKDLHLSPKQVF 824
Query: 482 --------------------------TRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG 515
RI I N +++G +DET TL+ G+++++I+
Sbjct: 825 FLENEPIFDSILSNMVLGLAVNLKKKARIRIKNSCTLIGVIDETGTLDEGEIYLKINRGS 884
Query: 516 Y----------------RQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 559
Y G+ S + + I++G V+V KNPC HPGD+R L+A
Sbjct: 885 YDYDQIQEKLVDEYDEIENADGKKSRLAEINTWLDQIIEGDVIVTKNPCSHPGDIRKLRA 944
Query: 560 VNV-PALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ--DPPMDYT 616
V H+ + +VF KG RP ++ SG DLDGD+Y WD+ L+ Q + P Y
Sbjct: 945 VGEHSTFEHLTNVIVFSSKGCRPEQHKMSGGDLDGDVYLCMWDESLVNALQKIEKPAVYK 1004
Query: 617 PAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA-RSEPCLQLAEKF 675
+ + D Q + + +Y Y D+LG +A+ H +D+ + ++ C++L+
Sbjct: 1005 KFEE-SIKTDSQKDTIVDYMAEYFEKDNLGHLAHLHLGLSDQLGVEGPYNKECVELSWYI 1063
Query: 676 SIAVDFPKTGVPAEIPPHLYVKE----YPDFMEKPD--KPTYESQNVIGKLFRAV 724
SIAVDF K G + + +++ +PD+MEK D + T ES ++G+L+RAV
Sbjct: 1064 SIAVDFAKHGKHVDKDKYEMIEKKLDRWPDYMEKNDIGRKTVESPLILGQLYRAV 1118
>gi|393244712|gb|EJD52224.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1061
Score = 235 bits (600), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 215/771 (27%), Positives = 366/771 (47%), Gaps = 142/771 (18%)
Query: 127 SKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED 186
K SSP++ ++ H + VTPS ++ GP+ N SNRVLRH+ + FLR+ F +ED
Sbjct: 259 GKLSSPSV------LFSHHLVVTPSGLHLEGPDPNKSNRVLRHYDQYTQFFLRVRFANED 312
Query: 187 LDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM 246
+ PR +Y R+ L+NGI + RKF+FL +S S L + SAW
Sbjct: 313 RLQFRW----PRDVDGESF----VYERVGGILKNGIEVAGRKFQFLGYSLSSLHQYSAWF 364
Query: 247 FASRYG-----------LTAAEIREWMGNFREIRNV-AKYAARLGQSFSSSKETLSVHMD 294
Y +T IR+ +GNF ++ + + Y AR+ Q+FS++ T+++
Sbjct: 365 VTDFYAEVEPGSGHRVRVTPQYIRDHLGNFAKVIDCPSLYGARMAQAFSATDPTITLADG 424
Query: 295 EIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFA-----RKVASKCGLK-DNPPSAFQIRYG 347
EIE +PD++ E G+ + SDG G +S E + +++ + + + +A+QIR G
Sbjct: 425 EIEYNVPDIRTETGE---LMSDGCGTISPELSLEMNEQRIHGRTRAEWEKVVNAYQIRVG 481
Query: 348 GYKGVVAADP-TSSKKLSLRDSMRKYES-ELTKLDVLAWSKYQPCFLNRQLISLLSTLGI 405
G KGVV DP +KL LR SM K+++ T ++V ++ +LNR LI L TLG+
Sbjct: 482 GAKGVVGVDPRLEGRKLRLRVSMIKFDALHSTDVEVANIARPARMYLNRPLIMTLETLGV 541
Query: 406 WDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPG--------ENTNILKEL--LICGY 455
+FE Q VR +A +++ P + +L++L + CG+
Sbjct: 542 RRHVFETLQANVVRTAH-------EAGDSIRRFIPNVGKLGDRFQLRFVLEQLVDIGCGF 594
Query: 456 KPDA---------EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL-NYG 505
+ D + F+ ++++ L +++ RI +P +++G +DE L N
Sbjct: 595 RDDCSETDGVVLDDSFVRQLVKSVLWETLRDVKYSARIQVPESWTLLGKVDEHDILTNEK 654
Query: 506 QVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 565
+V V + + Y +G+ ++G ++ ++P +HPGDV+++ ++ P
Sbjct: 655 EVMVYVMDSDYP--NGK-------------WLEGPALICRSPVMHPGDVQMVTCISPPQG 699
Query: 566 HH-----MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQS 620
+++C++F KG R + +G D DGD + + ++L + P P
Sbjct: 700 SDPSRCPLINCIIFSAKGTRSLASCLAGGDYDGDEFHISQYEQLFIKKSAHPAP-APEVV 758
Query: 621 MQL---DHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSI 677
+L + IEDV ++F +YI DS+G++A H + AD+ R ++ CL LAE +S
Sbjct: 759 ERLYVPERQGTIEDVADFFVDYINRDSVGLLARQHLIIADQNDRGVKAPKCLTLAEMYSR 818
Query: 678 AVDFPKTGVPAEIPPHLYVKEYP--DFMEKPDKPT------------YESQNVIGKLFRA 723
AVDFPKTG+P +PP ++ P +F KPD T Y S +G L+RA
Sbjct: 819 AVDFPKTGIP--VPP----RDMPALEFDAKPDWITNEVAAEEAAGAVYRSTKALGHLYRA 872
Query: 724 VKDIAPHTSCIRLFT--KEVARRSYDPDMEVDG-----------FEDHIDDAIYHKGN-- 768
V++ R F ++ DP DG F D + H
Sbjct: 873 VEE--------RQFEDLRDAPAEPQDPGALDDGITSVLAPLVAQFVDIGSETEAHGAVLP 924
Query: 769 -----YDYKLGNLMDYYGIKT-----EAEILTGSIMKMSKSFTKRRDAEAI 809
Y ++L + + + + + EAE+L G+I+ S KR+ A+
Sbjct: 925 PLYSWYTHELQRICELHTLNSKAPLEEAEVLLGTILARSSQPKKRKQLAAL 975
>gi|367034442|ref|XP_003666503.1| hypothetical protein MYCTH_2071684 [Myceliophthora thermophila ATCC
42464]
gi|347013776|gb|AEO61258.1| hypothetical protein MYCTH_2071684 [Myceliophthora thermophila ATCC
42464]
Length = 1182
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 201/728 (27%), Positives = 325/728 (44%), Gaps = 91/728 (12%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRA--------PVSISCIEHALDKLY 102
+LP+++LF + L+ NG + + + RL+ + A PVS+ + D +
Sbjct: 319 SLPFDLLFLLQALMTNGYLHPTTISALAQRLIQRFEAARKTGGPPPVSVDAFKKLFDWID 378
Query: 103 HLKECCYEPSRWLTDQYRKYMTSR-------SKPSSPAISLDDGLVYVHRVQVTPSRVYF 155
+ P + D Y+ + P + + RV VTP+ V
Sbjct: 379 YPSPYG-NPDMFEVDGIMAYLEESESLVREGASPRARIFEETQDRTRIFRVVVTPTSVLL 437
Query: 156 CGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRIL 215
GPE+ NRVLR F + F+R F DE + + + ++ RIY R
Sbjct: 438 HGPELEPMNRVLRKFP-NHSYFIRAQFCDEAGNDLFFN---------SKVSLDRIYNRFK 487
Query: 216 STLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAE----IREWMGNFREIRNV 271
S L +GI I R ++ L FS S LR SAW+ A + I E +G+F +IR+
Sbjct: 488 SILSDGIQIAGRVYKLLGFSHSSLRAHSAWLSAPFFHQNQRHGPDFIIETLGDFNDIRSP 547
Query: 272 AKYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIEIGKTKYVFSDGIGKVSAEFARKVA 329
A+ AAR+GQ+FS + L + I++ IPDV+ + VFSDGIG +S + V
Sbjct: 548 ARRAARIGQAFSETPWALDLDEYGIQVSRIPDVE----RNGRVFSDGIGTISHDALSAVY 603
Query: 330 SKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVL-AWSKY 387
P+ QIR+ G KG++A DP +++ +RDSM K+ S +L++ S+
Sbjct: 604 KVIPKSKGFPTCLQIRWAGAKGMLALDPLLEGRRICIRDSMIKFASNDKQLEICDMASRP 663
Query: 388 QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI- 446
P LNRQLI +L + DE F Q +++L I + + E+ +
Sbjct: 664 MPMVLNRQLIKILEDMKAPDEWFLNLQSTELQRLRGISATVYNTASFIRMQKVAESIKLH 723
Query: 447 --LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNY 504
L++ G + FL ++ +L L+ K+RI + G ++ G +DET L
Sbjct: 724 DFLRQTEAMGIDYRQDSFLRGAVEIILLRELRLLKHKSRIPVREGITLFGVMDETGFLKE 783
Query: 505 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 564
GQV+V R G ++V ++P LHPGD
Sbjct: 784 GQVYVTFDTEEGRYAQPPEP--------------GPLLVTRSPALHPGDW---------- 819
Query: 565 LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD-PPMDYTPAQSMQL 623
G R P++ SG DLDGD++ V WD E++ P DY +L
Sbjct: 820 -------------GSRDLPSQLSGGDLDGDVFHVIWDPEVVGALTTYQPADYGRTTPPEL 866
Query: 624 DHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIA--VDF 681
+ V + D+ +F +++ D LG+IA H + AD++ R + C+ LAE S A DF
Sbjct: 867 NRPVTLADIASFFVDFMKTDQLGVIAIRHMILADQKEDGTRDQNCIALAELHSSAWRPDF 926
Query: 682 --PKTGVPAEIPPHL-----YVKEYPDFMEKPDKPT---YESQNVIGKLFRAVKDIAPHT 731
P + ++ V+E D ++ +P Y+S+ +IG+L+RAV + +
Sbjct: 927 LAPGPSITVHDKSNISLDDHVVQEDSDSEDEEGQPRYGYYKSERIIGQLYRAVDERKIWS 986
Query: 732 SCIRLFTK 739
I++ K
Sbjct: 987 KDIKMIIK 994
>gi|388851646|emb|CCF54642.1| related to RNA-directed RNA polymerase [Ustilago hordei]
Length = 1557
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 189/629 (30%), Positives = 302/629 (48%), Gaps = 63/629 (10%)
Query: 135 SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTD 194
++DD + + VTP+R+ GP +VSNRV+R + +F R++F +ED D S
Sbjct: 412 TVDDVYSPMLHIDVTPTRILLHGPHYHVSNRVIRSYPNHWHHFARVTFTNEDRDLATSI- 470
Query: 195 LSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRY 251
R + D + I +R+L+ L +G+ + R ++ LA+SSS + + W F
Sbjct: 471 ---RPNYGFDDSERYIQSRVLNVLLHGLNVAGRHWDLLAWSSSSISTHTVWFVTPFVDNN 527
Query: 252 G--LTAAEIREWMGNFRE-IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK 308
G + A IR +G+F + I++ A Y ARL Q+FS++ T+SV I PD E G
Sbjct: 528 GQRIDANVIRSRLGDFSDVIKSPALYGARLSQAFSATAHTISVPASHIHAKPDKVSEQGM 587
Query: 309 TKYVFSDGIGKVSAEFARKV------ASKCG-----LKDNPPSAFQIRYGGYKGVVAADP 357
++DG+G++S E +V A G LK PSA Q+R GG KGV+A +P
Sbjct: 588 P---YTDGVGQISPELMAEVWTSFLAAHGEGRKRKLLKAAAPSAIQMRLGGSKGVLAVNP 644
Query: 358 -TSSKKLSLRDSMRKYESELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQR 415
K L +R SM K+ S L+V A ++ +P LNR LI+ L G+ F + Q
Sbjct: 645 RLRGKVLIIRPSMTKFGSPHQDLEVANASTRARPAKLNRPLINALEDRGVPASAFMEIQD 704
Query: 416 EAVRQLDAILTDPLKAQEALELMSPGENTNI------LKELLICGYKPDAEPFLSMMLQT 469
EA+ + +D A S G N+ L L + G + F ++ ++
Sbjct: 705 EAITLIGRARSDFQAAARLCSAFSFGTGCNLRSLFQKLHSLGLGGKTVHVDSFFLVIAKS 764
Query: 470 FRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSS 529
A+ L +++ K RI G +M+G DE L G+VF Q+ S
Sbjct: 765 VTAAALGDMKRKARI-PTRGVTMLGIADEFSLLKEGEVFAQVESV------------ESG 811
Query: 530 RSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMV---DCVVFPQKGM-RPHPNE 585
+ +R +V G ++ ++P + P DV ++K V P H ++ + +VF +P P
Sbjct: 812 KVTRRILV-GRNLIGRSPTVDPADVAMVKCVKPPPGHPLLQLRNVIVFDTCSRDQPFPRR 870
Query: 586 CSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQS-MQLDHDVQIEDVEEYFTNYIVNDS 644
G D DGD+Y + DD L Q M + P + +L D ++ +FT +++ND
Sbjct: 871 LGGGDCDGDLYTIYEDDRLFTKAQQSAMTFHPKIAPAELSRDCGSYELAFFFTQFMLNDF 930
Query: 645 LGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVP---AEIPPHLYVKE--Y 699
+G++++ H AD + C LA S A DF KTG +++P H +E
Sbjct: 931 IGLVSSTHLRIADISELGSHDSRCKTLARLHSQATDFKKTGYAVDRSQMPRH---REPII 987
Query: 700 PDFMEKPDKP----TYESQNVIGKLFRAV 724
PDF+ + +K Y S +G L+RAV
Sbjct: 988 PDFLAQGEKREGKLVYSSSRALGYLYRAV 1016
>gi|392597024|gb|EIW86346.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 1218
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 196/614 (31%), Positives = 298/614 (48%), Gaps = 68/614 (11%)
Query: 149 TPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRT 208
TP+ GP + SN VLR F + FLR+SF DE+ + D S +++ ++
Sbjct: 433 TPTTQILEGPLPDQSNSVLRRFGHH-ECFLRVSFQDENCAPLRR-DFE---WSISELMKS 487
Query: 209 RIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTAAEIREWMG 263
R + L G + RKFEFL +S S LRE S W F + G L AA IR +G
Sbjct: 488 RFRPKFL----KGHRVAGRKFEFLGYSMSGLREHSVWFVAPFQNDRGEWLNAAAIRNLLG 543
Query: 264 NFREI-RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSA 322
+F E+ + A+ AR Q+FS++ ++ + +EI + D I ++K V +DG +S
Sbjct: 544 DFSELLKRPARLGARWSQAFSTTDPSVVLRQEEIFRVDD--IISPRSKKVMTDGCSSISP 601
Query: 323 EFARKVASK--------CGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYE 373
+ AR + K LK NPPSAFQ R GG KGVV +P K + LR S K+E
Sbjct: 602 DLARNIWEKLRTDRRQLSSLK-NPPSAFQFRLGGAKGVVVQNPDLEGKVVCLRPSQLKFE 660
Query: 374 SELTKLDVLAWSKYQPCFLNRQLISLLSTL---GIWDEIFEKKQREAVRQLDAILTDPLK 430
DV + S+ +P +LNR LI+LL + G+ + K Q + + + + +
Sbjct: 661 GSELTFDVQSHSRSRPMYLNRPLIALLEHVAASGLVTRVL-KLQHDDIMEAQGVRSSFKD 719
Query: 431 AQEALELMSPGEN-------TNILKELLICGYKPDAEPFL--SMMLQTFR---ASKLLEL 478
A + LE+ G N+ EL + + + L +++ R L EL
Sbjct: 720 ASKMLEVHGLGAPFRLGSLFHNLSSELNLHVWTSETPRGLRNEIIIDAMRCISTHALREL 779
Query: 479 RTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ 538
+ + I +P ++MG DE LN G++F + H ++
Sbjct: 780 KYRAHIRVPGSYTLMGVSDEWDCLNPGEIFATVRDYRTGVYHA---------------IE 824
Query: 539 GLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 598
G V V ++P +HPGD++V+KAV P L H+ + +VF +G RP PN G DLDGD + +
Sbjct: 825 GPVAVTRSPQIHPGDIQVVKAVRRPELEHLTNVIVFSTRGDRPLPNYLGGGDLDGDDFNL 884
Query: 599 CWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADR 658
D+ L P P Y + H +EDV ++ +Y +D +G+I+ AH FAD
Sbjct: 885 ILDENLFPTYNRIPGSYVSLPIKETPHICGVEDVVDFIFDYFESDLVGLISIAHLRFADL 944
Query: 659 EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIP--PHLYVKEYPDFM----EKPDKPT-- 710
S+ C+ LAE S AVDFPKTG P + P PDF+ E P + +
Sbjct: 945 G--DPDSQECMTLAELASQAVDFPKTGTPVQFEDLPRFPDTIKPDFLAKEGEDPHQNSRF 1002
Query: 711 YESQNVIGKLFRAV 724
Y+S ++G+LFR +
Sbjct: 1003 YKSPKLLGRLFRRI 1016
>gi|395334238|gb|EJF66614.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1233
Score = 233 bits (593), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 196/636 (30%), Positives = 301/636 (47%), Gaps = 73/636 (11%)
Query: 145 RVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATD 204
R+ VTP+ + GP SNRV+R + D FLR+SF DE+ L R + D
Sbjct: 434 RLTVTPTTMILEGPFPERSNRVMRKYYHSQDCFLRVSFQDEN-------RLQYRFNREVD 486
Query: 205 ITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS-RYG--------LTA 255
R I R+ L GI I F FLA+S S L+E + W RY + A
Sbjct: 487 -GRRFIDLRVKRVLLEGIRIAGAHFRFLAYSQSALKEHAVWFVKPFRYRDSHQNVHFVDA 545
Query: 256 AEIREWMGNFREI-------RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK 308
I + +G F + R A+YAAR+ Q+F+++ +S+ + + + D+K GK
Sbjct: 546 TTIIQSLGQFHNLPFDPTLMRCPARYAARISQAFTATDAAVSMAVGVVYMGRDIKGRNGK 605
Query: 309 TKYVFSDGIGKVSAEFARKV-------ASKCGLKDNPPSAFQIRYGGYKGVVAAD-PTSS 360
VF+DG+G +S A + + K P AFQ+R+ G KG+++ D +
Sbjct: 606 D--VFTDGVGTLSPMLAESIWKALQSRSGKTRKGKTYPRAFQVRFQGSKGMLSVDYKLTD 663
Query: 361 KKLSLRDSMRKYESELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEKKQREAV 418
+ LR SM K++ + + +A + +P +LNR LI LL LG+ F+K Q +AV
Sbjct: 664 NAIMLRPSMIKFDDSKSAIVEVARAFDRPGAYYLNRPLIMLLEGLGVPYTTFKKLQDDAV 723
Query: 419 RQLDAILTDPLKAQEALELMSPGENTNILKELL---ICGYKP-DAEPFLSMMLQTFRASK 474
R +T + + E G + I +L G P D + F M+
Sbjct: 724 RDAQTSVTSLKLSAKLFEDHGLGVSFRIAPVMLGLHKLGLGPLDDDIFWRQMMDFAVNHV 783
Query: 475 LLELRTKTRIFIPNGRS--MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSR 532
L EL+ + RI +P S ++G D R L G++FV + S + +
Sbjct: 784 LRELKHRARIPVPGTDSWTLVGVADIHRELKEGEIFVCVD---------------SPKEK 828
Query: 533 QRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA------LHHMVDCVVFPQKGMRPHPNEC 586
++G VV+++P +HPGDV++ A+ P + + + VVF G RP P+
Sbjct: 829 GLIFLEGPCVVSRSPTIHPGDVQIATAIGRPRPGSHYDVESLRNTVVFSTTGSRPLPSCL 888
Query: 587 SGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLG 646
G DLDGD Y V +L+P + P Y PA +DH+ ++DV E+ +I +D+LG
Sbjct: 889 GGGDLDGDEYNVTTRPDLMPKRTYDPASYEPAPRKMVDHESTMDDVAEFVAEFISSDTLG 948
Query: 647 IIANAHTVFADR--EPRKARSEPCLQLAEKFSIAVDFPKTG--VPAEIPPHLYVKEYPDF 702
IIA + AD+ + + CL+LAE S+AVD+ KTG VP E P ++ PD+
Sbjct: 949 IIATNWLITADQTNDTDGILNPDCLRLAELHSLAVDYAKTGQPVPIEQIPRPPLRIKPDW 1008
Query: 703 ME------KPDKPTYESQNVIGKLFRAVKDIAPHTS 732
K Y S +GKLFRA+ A T+
Sbjct: 1009 NAPETHSGKNSLSFYRSMTAVGKLFRAIDLPAVQTA 1044
>gi|393247225|gb|EJD54733.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1245
Score = 232 bits (591), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 191/628 (30%), Positives = 296/628 (47%), Gaps = 82/628 (13%)
Query: 146 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI 205
V V+PS V GP + SNR+L F ++F+R++F D D R + D
Sbjct: 451 VAVSPSSVSITGPIPDRSNRILHAFGNFQEHFIRVAFTDNDGQTF-------RYDANVD- 502
Query: 206 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYGL--TAAEIRE 260
T+ + + +L L+NG +G R FE+LA+S S L++ S WM F G +A+ IR
Sbjct: 503 TQALVRSHVLPILQNGFKLGGRLFEYLAYSQSALKQHSVWMVHPFTDTAGRRHSASTIRA 562
Query: 261 WMGNF-REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 319
MG F ++ R A+ AR+ +FS+++ + + + PD+ G SDG G
Sbjct: 563 DMGTFTKDERCPARVGARMSLAFSATEPSGELLSSNRRMEPDIG---GDGPACMSDGSGL 619
Query: 320 VS--------AEFARKVASKCGLKDNPP-SAFQIRYGGYKGVVAADPT-SSKKLSLRDSM 369
+S EF R + + ++ PP S Q+R GG KG + DP + + LR SM
Sbjct: 620 ISIEAMAAVWMEFCRGRSKRTVIRPPPPPSVIQVRVGGAKGTLFVDPMLPGRAVVLRPSM 679
Query: 370 RKYES--ELTKLDV-LAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT 426
K+E+ +++V +A++K P +LNR LI +L G+ E F + Q++ V + + T
Sbjct: 680 MKFEAGERFNQIEVCMAFTKPSPAYLNRPLIMVLEARGVPKETFLRLQQDVVERTQ-LAT 738
Query: 427 DPLKAQEAL----ELMSPGENTNILKELL--------ICGYKPDAEPFLSMMLQTFRASK 474
L++ AL L P + + + + Y + F++ L
Sbjct: 739 RTLESAAALLESNGLGGPVGLPTLFRRIRQRFSNFPEVDSYVLTQDAFVARTLDFTVNHV 798
Query: 475 LLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQR 534
L L+ + RI IP +++G D LN G++FV I Q+
Sbjct: 799 LRGLKFRGRIPIPFSWTLVGVPDHHGILNEGEIFVCIREEDISQVE-------------- 844
Query: 535 FIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFPQKGMRPHPNEC-S 587
++G VVV+++P HPGDV ++KA+ P A ++CVVF KG R P C
Sbjct: 845 -YLEGDVVVSRSPTCHPGDVMIMKAIGRPPAGTAFATERPINCVVFSTKGAR-SPGSCLG 902
Query: 588 GSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGI 647
G D DGD Y V L P + P Y + +ED+ E+FTN+++ND L
Sbjct: 903 GGDYDGDEYVVTKLPSLRPTKPAGPAMYKNTPRQDIGRPYTMEDIYEFFTNFVINDQLPR 962
Query: 648 IANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPD 707
IA+ AD +E C++LAE S+AVD+PKTGVP H + + P+ + PD
Sbjct: 963 IASLWLRIADSSEESVYNEQCMKLAELHSVAVDYPKTGVPVN---HSDIPQAPNRI--PD 1017
Query: 708 -----------KPTYESQNVIGKLFRAV 724
Y S+ +G LFRAV
Sbjct: 1018 WSISELGASDRDRVYRSEKALGYLFRAV 1045
>gi|353237176|emb|CCA69155.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora indica
DSM 11827]
Length = 1262
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 235/804 (29%), Positives = 360/804 (44%), Gaps = 143/804 (17%)
Query: 136 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 195
L G + V +TP+ + GP SN V+R + ++FLR++F DE+ +I
Sbjct: 461 LPPGWYWACSVTITPTTMRLEGPHHGQSNGVIRRYVEHSEHFLRVNFTDEERLQIRWD-- 518
Query: 196 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG 252
R T R R+ + L+NG IG R F+FLA+S+S LRE S W F RY
Sbjct: 519 --RDVDGTSFVRERVG----NFLKNGFDIGGRHFDFLAYSNSGLREHSMWFVAPFRDRYN 572
Query: 253 --LTAAEIREWM-----------GNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEII 299
+ A IR + F+ + AK+ ARL Q+FS+++ + + DE+EI
Sbjct: 573 NQVNAEIIRNLIMDIELQKGGDTAEFKLEKQPAKFGARLAQAFSTTEPAIELKEDEVEIK 632
Query: 300 PDVKIEIG-------KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV 352
D+ ++ KT F+DG G +S ++ NP +R GG KGV
Sbjct: 633 EDIMVDPKFTKPDGPKTATEFTDGYGCMSLAVRDEIWRAL----NP----GVRLGGAKGV 684
Query: 353 VAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEI 409
+ +PT +K+ L SM K++S+ L + A+ P FLNR LI++L LG+ +
Sbjct: 685 LGINPTLEGRKVVLHRSMVKFKSKDYGLHI-AFKFDHPLKLFLNRPLIAILEHLGVQIDW 743
Query: 410 FEKKQREAVRQLDAIL--TDPLKAQ--EALELMSPGENTNILK-----ELLICGYKPDAE 460
F++ A ++++ L D A+ E+ L P + IL+ E+ +
Sbjct: 744 FKRLLVNAQSKMNSTLLSIDEGAAEFFESRRLGLPFDLPRILRSLEKYEVTRVKLQEYDH 803
Query: 461 PFLSMMLQTFRASKL---LELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR 517
PF L+ +K EL+ K RI +P G S++G D L +V++ +
Sbjct: 804 PFNDFWLRCLDVAKAHIDRELKYKARIPVPFGCSLVGVPDVHMELEADEVYI-----CKQ 858
Query: 518 QLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA-----LHHMVDCV 572
+ E F G V + ++P +HPGDV+ KA + P H +V+ V
Sbjct: 859 ERDREPKWFPEK--------PGYVYITRSPSIHPGDVQKFKAKHPPRGSVYYNHPVVNAV 910
Query: 573 VFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD------PPMDYTPAQSMQLDHD 626
VF KG RP + G D+DGD++ ++IP + D PP Y ++ L+
Sbjct: 911 VFSCKGARPPASMLGGGDVDGDLF------QIIPEKPDFKLEVGPPASYEVEDTLTLERP 964
Query: 627 VQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGV 686
IED+ ++ YI +D +G++A H + AD+ CL+LAE S AVDF K+G
Sbjct: 965 TTIEDIADFVVEYINSDKMGLVAIQHLILADQSNSGLHDPKCLKLAELHSKAVDFAKSGK 1024
Query: 687 PAEIP--PHLYVKEYPDFMEKPDK-----PTYESQNVIGKLFRAVKDIAPHTSCIRLFTK 739
P P Y PDF K + YES +G L+R +K I +
Sbjct: 1025 PVSFQDLPKRYFPYTPDFQHKETRFDDQTSYYESPKALGVLYRMIKHI-----------R 1073
Query: 740 EVARRS---YDPDME-VDGFEDH------------IDDAIYHKGN-----YDY--KLGNL 776
EV R YDP + V+ H I DA+ HK Y+Y +L ++
Sbjct: 1074 EVPERDKIVYDPTFDPVEHPITHALLFIGRPYCPSIQDALVHKERVMRTFYEYARELKSI 1133
Query: 777 MDYYGIK----TEAEILTGSIMKMSKSFTKRRDAEA------IGMAVRALRKEARAWFKE 826
Y I TE E++ G+I++ S S TKRRD A GM V +R + +
Sbjct: 1134 RRIYTIGRTPLTEEEVVMGTILQAS-SQTKRRDDMASKVRDVAGMLVDQVRHAFQGY--- 1189
Query: 827 KSGSDTEDDAYAKA-SAWYHVTYH 849
D D + +A AWY H
Sbjct: 1190 --REDPLRDWFTRALCAWYCSMLH 1211
>gi|390596235|gb|EIN05637.1| RdRP-domain-containing protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 1230
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 206/662 (31%), Positives = 305/662 (46%), Gaps = 96/662 (14%)
Query: 138 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED-LDKIHSTDLS 196
+G+ V VTPS + + SNRV+R + +F+R+ F DED L DL
Sbjct: 399 NGIFDCLHVAVTPSSIIPREQYPDRSNRVIRRYPNHQQHFVRVQFCDEDYLQYRFDRDLD 458
Query: 197 PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLT-- 254
G + R+ +R GI IG R FEFLA+S S L++ + W F + L
Sbjct: 459 GDGF---------VRDRVGGVMRTGIRIGGRAFEFLAYSQSALKDHAVW-FVRPFNLDGH 508
Query: 255 ---AAEIREWMGNF-REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI-EIGKT 309
A IR+ +G F + IR + Y AR+ Q+F+++ +++V +EI+ IPD++I +
Sbjct: 509 RVDAEAIRQSLGTFTKVIRFPSLYGARMSQAFTATDPSITVTPNEIKRIPDIEIVDSTGQ 568
Query: 310 KYVFSDG-------------------IGKVSAEFARKVAS--------KCGLKDNPPSAF 342
K F+DG +G +S A+ +AS K G K P AF
Sbjct: 569 KRQFTDGSLPSTLSYADPIDYFRLAGVGTISLALAKDIASALLAVRKRKRG-KYFKPRAF 627
Query: 343 QIRYGGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDV-LAWSKYQPC--FLNRQLIS 398
QIR+ G KG+V+ D + L LR SM K+ES LD+ +A + +P LNR LI
Sbjct: 628 QIRFAGSKGMVSVDINEEGRVLCLRPSMIKFESP-DSLDIEIAKTFDRPGKFLLNRPLIM 686
Query: 399 LLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLI---CGY 455
+L LG FE Q AV + +A K+ LE+ G + + G
Sbjct: 687 ILEGLGAPAAAFEALQDAAVEEAEAARESLQKSARMLEVHGLGGAYRLPSVADVPHRLGL 746
Query: 456 KPDAEP----------FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYG 505
+E F+ M+ L EL+ RI +P+ +++G D L G
Sbjct: 747 PRSSEARGTTQCIDDEFMDRMVAFAVNHVLRELKHHARIPVPDSWTLVGIADIHGVLEEG 806
Query: 506 QVF--VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP 563
+VF VQ G QR ++G V+V ++P HPGDV++ +A+ P
Sbjct: 807 EVFACVQPPQGG-----------------QRVYLEGNVMVTRSPVAHPGDVQMARAIGRP 849
Query: 564 ALHHMVDC------VVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTP 617
D V+F KG RP P+ G DLDGD++ V ++ P PP Y
Sbjct: 850 PPGSAYDTEPIPNTVIFSVKGSRPLPSALGGGDLDGDVFNVSQFADIFPRHLHPPASYEA 909
Query: 618 AQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSI 677
A +LD D IEDV ++ ++I ND LG+IA + AD+ P C++L++ S
Sbjct: 910 AVRKELDRDSTIEDVMDFVVDFINNDRLGVIAINWLIIADQSPEGVFCTECIKLSQLHSD 969
Query: 678 AVDFPKTG--VPAEIPPHLYVKEYPDF-----MEKPDKPTYESQNVIGKLFRAVKDIAPH 730
AVDF K+G VP P L ++ PD+ + D YES IGKLFR + P
Sbjct: 970 AVDFQKSGRSVPLGDVPRLLMRARPDWNAPETINPEDGAYYESTKAIGKLFRRIDLPGPQ 1029
Query: 731 TS 732
+
Sbjct: 1030 EA 1031
>gi|395332591|gb|EJF64970.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1236
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 206/693 (29%), Positives = 323/693 (46%), Gaps = 99/693 (14%)
Query: 106 ECCYEPSRWLTDQYRKYMTSRSKPS-SPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSN 164
E C+ + L D+ R S P SP G V +TP+RV GP SN
Sbjct: 388 EQCFRKA--LGDERRDVHASIVDPDDSPRTR---GSVQCAHAIITPTRVLLEGPYDTQSN 442
Query: 165 RVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILI 224
RV+R + D FLR+ F +E+ +S R + R+ I R L+ G+ I
Sbjct: 443 RVIRKYYAYRDYFLRVEFREENR-------MSFRWPIEVN-GRSLIQQRFGKFLKQGLEI 494
Query: 225 GDRKFEFLAFSSSQLRESSAWMFA-----SRYGLTAAEIREWMGNF---REIRNVAKYAA 276
R F FL +S+S LRE + W A +T +IR +G+F + IR +KYAA
Sbjct: 495 AGRTFRFLGYSTSGLREHTVWFMADFNHPEEGPVTPEKIRNDLGDFTFKKSIRQPSKYAA 554
Query: 277 RLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKV------- 328
R+ Q+FS + + + + + E +PD +G Y F+DG G +S E ++
Sbjct: 555 RIAQAFSGTDPSYKITIGQWEEGVPD----LGTDPYEFTDGQGTISVELRDRIWDVLCEA 610
Query: 329 ---ASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVL-- 382
K LK PSAFQIR+ G KG+V D KL LRDSM+K+ E + +
Sbjct: 611 SPDKRKLILK---PSAFQIRFLGCKGIVVVDEQLEGIKLRLRDSMKKFHVEHMREAEIEI 667
Query: 383 --AWSKYQPCFLNRQLISLLSTLGIWDE----IFEKKQREAVRQLDAILTDPLKAQEALE 436
A+ K P L R LI++L GI + + EK +++ V D I ++
Sbjct: 668 AKAFIKPGPARLCRPLIAVLEDRGIHKQHLLALQEKAKKKVVEARDTI-------EQTAG 720
Query: 437 LMSPGENTN------ILKELLICGY-----KPDA-----EPFLSMMLQTFRASKLLELRT 480
L+ + N IL+ L G KP A F++ ++ + L E++
Sbjct: 721 LLRDHDLGNVYGLRYILEHLRKAGVDTGKKKPRARHIMDNEFIARLIDYAQTHILSEIKH 780
Query: 481 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLH-GESSLFSSSR---SRQRFI 536
RI I ++GC DE G ++ + + E +F+ + S +
Sbjct: 781 DARIPIEEAHQLVGCADE------GPAYIAAGHDPEKVICLKEGEIFACVQQPDSDEPIY 834
Query: 537 VQGLVVVAKNPCLHPGDVRVLKAVNVPA--------LHHMVDCVVFPQKGMRPHPNECSG 588
+QGLV ++++P +HPGDV+ ++A+ P ++ + VV P G R + +G
Sbjct: 835 IQGLVSISRSPHIHPGDVQRVRAIGKPPDDPDKVCFFRNLRNVVVMPSVGDRSLASMLAG 894
Query: 589 SDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGII 648
D+DGD + V D L+P P Y + LD D ++D+ ++F Y+ +D +G++
Sbjct: 895 GDVDGDEFLVIKDMTLLPTTLVEPASYVGVKPEPLDRDSTVDDICDFFMEYMQSDVVGLV 954
Query: 649 ANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIP--PHLYVKEYPDFMEKP 706
A+ H V AD+ E C++LA+ S AVD+PK GVP + P ++ PD+ +
Sbjct: 955 ADLHLVIADQSKYGTFDEDCMRLAQLCSQAVDYPKNGVPVNVENMPRKLIRAKPDWKKPE 1014
Query: 707 D---KPT--YESQNVIGKLFR--AVKDIAPHTS 732
D +P YES +G+LFR VK I P +S
Sbjct: 1015 DTDYRPADYYESTRALGELFRNIVVKRIDPPSS 1047
>gi|392597023|gb|EIW86345.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 1223
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 230/765 (30%), Positives = 351/765 (45%), Gaps = 98/765 (12%)
Query: 138 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 197
DG + + TPS GP + SN VLR F + + FLR+SF DE+ + D
Sbjct: 430 DGAYEAYHLIFTPSTYILDGPLPDQSNSVLRRFG-NHECFLRVSFQDENRAPLRR-DFE- 486
Query: 198 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYGLT 254
S +++ + R L G + R +EFL +S S LRE S W F S G+T
Sbjct: 487 --YSISELMQKRFRPIFL----GGHKVAGRHYEFLGYSMSGLREHSVWFVTPFTSDKGIT 540
Query: 255 --AAEIREWMGNFREIR-NVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY 311
A IR +G+F E++ A+ AR Q+FS++ ++++ EI+ + D+ G
Sbjct: 541 MDAETIRGQLGDFSELQYKPARLGARWSQAFSTTDPSVTLERREIQYVNDITSASGN--- 597
Query: 312 VFSDGIGKVSAEFARKVASKCGLKDN-------PPSAFQIRYGGYKGVVAADP-TSSKKL 363
+DG +S E AR++ + PPSAFQ R GG KGVV +P + + +
Sbjct: 598 CMTDGCSSISIELAREIWTSLNRTRRRTFPLKFPPSAFQFRLGGAKGVVVQNPDLNDRVV 657
Query: 364 SLRDSMRKYES-ELTKLDVLAWS-KYQPCFLNRQLISLLSTLG---IWDEIFEKKQREAV 418
LR S RK+E+ + DV + + + +P FLNR LI++L LG D I E Q +
Sbjct: 658 CLRKSQRKFEAPNVLTFDVQSHTARPRPMFLNRPLIAILEHLGEQDTMDRILEL-QHADI 716
Query: 419 RQLDAILTDPLKAQEALELMSPGEN-------TNILKELLICGYKPDAE-----PFLSMM 466
++ + + A + L++ G + N+ KEL + + +++ +
Sbjct: 717 QEAQGVRSSFRDAAKMLQVHGLGASFHLTSLFGNLAKELNMRVWTRESDDGWQNEVVIDA 776
Query: 467 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLF 526
L+ L EL+ + I +P ++MG DE L G++F +
Sbjct: 777 LRCISTHALRELKYRAHIRVPGSYTLMGVSDEWNCLRPGEIFATVRDI------------ 824
Query: 527 SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNEC 586
R+ + G V V ++P +HPGD++V+ AV P L H+ + VVF +G R P+
Sbjct: 825 ---RNGLDKPIVGRVAVTRSPQIHPGDIQVVTAVRRPELEHLTNVVVFSTQGDRALPSFL 881
Query: 587 SGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLG 646
G DLDGD + + D+ L P P Y + H IEDV ++ NY D +G
Sbjct: 882 GGGDLDGDDFNLILDEALFPTANSEPGSYVSLPIKETTHPCGIEDVVDFVFNYFETDLVG 941
Query: 647 IIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAE--IPPHLYVKEY-PDFM 703
IA H FAD E S C+ LAE + AVDFPKTG P + + P L KE PDF+
Sbjct: 942 RIAIMHLRFADLEDPGCAS--CMTLAELAAQAVDFPKTGTPVDFKLLPRLPDKEIKPDFL 999
Query: 704 ----EKPDKPT--YESQNVIGKLFRAV--KDIAP-----HTSCIRLFTKEVARRSYDPDM 750
E P K YESQ ++G+LFR V +D +P S + T A R P
Sbjct: 1000 AREGENPHKNERFYESQKLLGELFRRVPLQDWSPGFWNKEESPFDVNTVYAAIRRARPWT 1059
Query: 751 ---------------EVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMK 795
E+ G + D +Y + DY +EAE+++G+I+
Sbjct: 1060 LGLPILGKPSPVLWEEMMGLCEAYCDQLYAIAQTHTVSRDKDDYI---SEAELVSGTIIA 1116
Query: 796 MSKSFTKRR---DAEAIGMAVRALRKEARAWFKEKSGSDTEDDAY 837
KRR +A + + VR +R+E R E D+E D +
Sbjct: 1117 NWSDHRKRREAVNAMNLQVLVRQVRQELRPQRHEPDVEDSEYDTF 1161
>gi|336367253|gb|EGN95598.1| hypothetical protein SERLA73DRAFT_162413 [Serpula lacrymans var.
lacrymans S7.3]
gi|336379975|gb|EGO21129.1| hypothetical protein SERLADRAFT_417518 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1199
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 212/746 (28%), Positives = 343/746 (45%), Gaps = 83/746 (11%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH---ALDKLYHLKEC 107
L + + F++ L+ NG ++ LD RAP+ EH A + L + E
Sbjct: 324 GLDWLVAFQVEALLHNGLLSTVELDD--------LRAPIDRLVQEHRKLAGEILRYFTEA 375
Query: 108 CYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVL 167
S T + + SK S + G + H V TP+R+ GP I SNRV+
Sbjct: 376 LASRSPNETPRQCFDLVRHSKLKSKLRTSPQGRFFCHHVTFTPTRMLLEGPYIIQSNRVI 435
Query: 168 RHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDR 227
R++ D+F+R+ F DED L+ R + D + R+ L+NG + R
Sbjct: 436 RNYEGYEDHFIRVDFRDED-------RLNYRWNRELDAL-AFLEPRVGGILKNGFELAGR 487
Query: 228 KFEFLAFSSSQLRESSAWMF-----ASRYGLTAAEIREWMGNFRE-IRNVAKYAARLGQS 281
FEFLA+SSS LRE + W + +T+ IR +G+F I + +KYAAR+ Q+
Sbjct: 488 DFEFLAYSSSALREHAVWFVNPFSHPTEGWVTSESIRSGLGDFSGVIFHPSKYAARMAQA 547
Query: 282 FSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV-ASKC------GL 334
FS++ ++ +H + IPD +G F+DG+G +S E + + C G
Sbjct: 548 FSATDPSVKIHKSQWREIPD----LGDETTCFTDGVGTISRELGDMIWGALCEARRDHGE 603
Query: 335 KDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKY---ESELTKLDVL-AWSKYQP 389
PSA+QIR+ GYKG+VA D + ++ LR SM K+ E+E ++++ A+ +
Sbjct: 604 HTIKPSAYQIRFLGYKGMVAIDAQLTGVQMCLRPSMNKFLGKETEYAEIEIARAFERPNL 663
Query: 390 CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN---TNI 446
LNR L+ +L G + F K Q E + + + + LE + G N + I
Sbjct: 664 PHLNRPLVMVLEDRGAKRDSFVKLQDEVIAETRMANDSIERFRSLLEEHNLGHNFRLSPI 723
Query: 447 LKELLICGYKPDAE--------PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 498
L++L G + A+ PFL+ L ++ + RI IP ++G DE
Sbjct: 724 LQQLNALGLELKADQTKEAMDSPFLAQTRSCAINHVLRSVKHEARIQIPKSYMLVGVADE 783
Query: 499 TRT-LNYGQ--VFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR 555
+N G+ VF G Y + + + ++GL V++++P +HPGDV+
Sbjct: 784 GPAYVNAGRDNVFCLPEGKIYACVQKPGDM-------EPIWLEGLCVISRSPVIHPGDVQ 836
Query: 556 VLKAVNVPA------LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ 609
+ A+ P H+ + VV P G R + G DLDGD+Y V + +
Sbjct: 837 RVYAIGKPPANKLCLFSHLKNVVVLPSVGARSLASCLGGGDLDGDLYEVIQHSPFLVTEH 896
Query: 610 DPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCL 669
P +Y LD IEDV ++ YI +D +G++++ H V AD+ + CL
Sbjct: 897 HDPAEYPAGSIFTLDRPSTIEDVCDFVVEYIHSDVVGLVSDKHIVIADQSKHGTLDQNCL 956
Query: 670 QLAEKFSIAVDFPKTGVPAEIP--PHLYVKEYPDF----MEKPDKPT-YESQNVIGKLFR 722
+L+ S AVD+PK G+ +I P + PD+ ++ P K YES +G L+R
Sbjct: 957 KLSALHSQAVDYPKNGIKVDISFLPRSLIPYKPDWHAAEVDSPRKTDYYESSRALGYLYR 1016
Query: 723 AVKDIAPHTSCIRLFTKEVARRSYDP 748
+ + V R+ Y+P
Sbjct: 1017 NI--------TLEDLPTSVPRKPYEP 1034
>gi|299752904|ref|XP_001832921.2| RNA-dependent RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298410053|gb|EAU88888.2| RNA-dependent RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1251
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 193/661 (29%), Positives = 305/661 (46%), Gaps = 96/661 (14%)
Query: 130 SSPAISLDDGLVYVH-RVQVTPSRVYFCGPEINVSNRVLRHFR-RDIDNFLRISFIDEDL 187
SP++ DG Y V VTP+ ++ GP SNRV+R + + +FLR++F DE
Sbjct: 420 GSPSLEATDGSNYQSLHVTVTPTAIFLEGPYPEQSNRVIRAYDPQHHSSFLRVTFADEGR 479
Query: 188 DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF 247
+ S+D R R R +L NG+ I R+FEFLA+S S L+E S W
Sbjct: 480 LQYRSSD---RQVDHKAFVRARFGDILL----NGLEIAGRRFEFLAYSMSALKEHSVWFV 532
Query: 248 --------ASRYGLTAAEIREWMGNF-------REIRNVAKYAARLGQSFSSSKE-TLSV 291
R +TA I + +G F R + A+YAAR+ Q+F+++ T+ V
Sbjct: 533 KPFDVIENGHRVTVTADSIIQSLGTFDGLDFEPRLMHCPARYAARISQAFTATDLCTIEV 592
Query: 292 HMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNP-PSAFQIRYGGYK 350
EI +I D+++ G K+ +DG+G +S +R + + P P+A Q+R GG K
Sbjct: 593 QDLEITVIDDIEVTSGGHKWTHTDGVGTMSPMASRAIWKALPKRKGPAPAADQVRIGGAK 652
Query: 351 GVVAADPT-SSKKLSLRDSMRKYESELTKLDVLA--WSKYQPCFLNRQLISLLSTLGIWD 407
G+++ D T + K+ LR SM K+E+ K +A + + P +LNR LI +L LG+
Sbjct: 653 GMLSVDYTLTGHKICLRPSMVKFEAPTRKYIEIARAFDRPTPYYLNRPLIMILEGLGVPY 712
Query: 408 EIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN------TNILKELLICGYKPDAEP 461
FE Q AVR+ + +A L+ G + N L L I PD
Sbjct: 713 STFEHFQDRAVRETRQAASSLRRAASMLDSYGLGSSFRLSSVMNSLDRLGIRHLNPDK-- 770
Query: 462 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG 521
F S ++ L +L+ RI IP +++G D R L G++F +
Sbjct: 771 FYSKAMEFAINHVLRDLKNHARIPIPGAWTLVGVADVHRFLQPGEIFAYVKPT------- 823
Query: 522 ESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFP 575
+ + F ++G ++++++PC+HPGDVR+ +A+ P + + VVF
Sbjct: 824 ---------NEKGFYLEGDILISRSPCIHPGDVRITRAIGPPPPGSPFEREPLANTVVFN 874
Query: 576 QKGMRPHPNEC-SGSDLDGDIY-FVCWDDELI----PPQQDPPMDYTPAQSMQLDHDVQI 629
C G DLDGD Y + D + P + P Y PA+ L+ +
Sbjct: 875 VLA------SCLGGGDLDGDTYNLLPLSDPALQGFRPTRIPEPSQYAPAEKRYLEEKSTM 928
Query: 630 EDVEEYFTNYIVNDSLGIIANAHTVFADREPR-------KARSEP---------CLQLAE 673
DV E+ YI++D LG+++ + AD+ A +P C+ LA+
Sbjct: 929 RDVAEFVLEYILSDVLGMVSINWRIIADQSRHAYLATYPTANGDPDSTGIFDSDCMLLAD 988
Query: 674 KFSIAVDFPKTGVPAEIP--PHLYVKEYPDF-------MEKPDKPTYESQNVIGKLFRAV 724
S AVD+PK+G P + P L K PD+ + + Y S +GKLFR +
Sbjct: 989 LHSAAVDYPKSGTPVDFKKIPRLKHKLKPDWNAPETLDAQALSEKYYVSSTALGKLFRRI 1048
Query: 725 K 725
+
Sbjct: 1049 E 1049
>gi|340505285|gb|EGR31631.1| RNA-dependent rna polymerase, putative [Ichthyophthirius
multifiliis]
Length = 592
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 141/418 (33%), Positives = 219/418 (52%), Gaps = 42/418 (10%)
Query: 339 PSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKY----ESELTKLDVLAWSKYQPCFLN 393
P AF++ G KGV+ K + LR+SM+K+ E + +D+L +KY+ +LN
Sbjct: 124 PHAFKLDLLGSKGVLMQMKFIEKNTIILRNSMKKFDVLNEGDKLYIDILDMNKYRNGYLN 183
Query: 394 RQLISLLSTLGIWDEIFEKKQREAVRQL------DAILTDPLKAQEALELMSPGEN---- 443
RQ+I LL +LGI D+IF Q E ++ L DA + L+
Sbjct: 184 RQVIILLKSLGIQDKIFRDLQNEFLQMLEKEGFKDANFYNLFNVDFEENLVEKNIEKLDR 243
Query: 444 -TNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL 502
T +LK++ +PF+ +L + + L+ K I++ ++G LDE L
Sbjct: 244 ITVLLKKMYDEQLYRKKDPFIDGVLNSLKYRGYYILKKKCNIYVEKSARLLGILDEFNLL 303
Query: 503 NYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNV 562
QV+ S G LF ++G V+V KNPCLHPGD+R+L AV+
Sbjct: 304 EENQVYANYSKDG--------ELFQE--------IEGKVIVVKNPCLHPGDIRILNAVST 347
Query: 563 PA------LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYT 616
L + ++FP+KG P + +GSDLDGD YF+CWD+ LIP ++ P DY
Sbjct: 348 KNDKKYNFLKEYKNVLIFPKKGKIPIAAQIAGSDLDGDQYFICWDERLIPNKEVIPFDYD 407
Query: 617 PAQSMQLDHDVQ--IEDVE--EYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLA 672
+ + ++Q I D + ++F ++I ++LG I N+H AD+ A C+QLA
Sbjct: 408 QENNKNIQQNLQNQINDQQMLDFFIDFINCENLGKIDNSHLAIADQSSFFALDFRCIQLA 467
Query: 673 EKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPH 730
+ + AVD+ KTGV +P +L K++PD+MEK DK YES++V+G L+R VK ++ H
Sbjct: 468 KLHAQAVDYAKTGVSPYVPLNLQSKQFPDYMEKSDKNQYESKSVLGYLYRQVKGLSKH 525
>gi|390594179|gb|EIN03593.1| RdRP-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 973
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 184/604 (30%), Positives = 284/604 (47%), Gaps = 82/604 (13%)
Query: 105 KECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSN 164
KE Y + WLTD DGL V VTPS + + SN
Sbjct: 412 KEFKYNNATWLTDT------------------ADGLFDCLHVIVTPSSIVPQEQYPDRSN 453
Query: 165 RVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILI 224
RV+R F +F+R+ F +ED ++ D G + TRI LRNG +
Sbjct: 454 RVIRSFPDHQQHFVRVQFTEEDYHQLR-FDRDVDGEHF-------VKTRIGGVLRNGFQV 505
Query: 225 GDRKFEFLAFSSSQLRESSAWMFASRYGL-----TAAEIREWMGNF-REIRNVAKYAARL 278
G R FEFLA+S S L++ + W F R+ + T IRE +G+F + I + Y AR+
Sbjct: 506 GGRTFEFLAYSQSALKDHAVW-FVRRFKIDNQWITGNTIRESLGSFDKVIYCPSLYGARM 564
Query: 279 GQSFSSSKETLSVHMDEIEIIPDV--KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD 336
Q+F+++ ++++ +EI IPD+ + G+T + F+DG+G +S E A+++ + +
Sbjct: 565 SQAFTATDPSVTITAEEIVRIPDIERRDSTGRT-WQFTDGVGTISPELAQEITTALVARS 623
Query: 337 NP-------PSAFQIRYGGYKGVVAAD-PTSSKKLSLRDSMRKYESELTKLDV---LAWS 385
P AFQIR G KG+V+ + + L LR SM K+ES LD+ +
Sbjct: 624 RRKKGRYFRPRAFQIRIAGSKGMVSVNHKLHGRVLCLRPSMIKFESP-NSLDIEIAKTFD 682
Query: 386 KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN-- 443
K LNR L+ LL LG+ + F K Q AV A KA + LE G
Sbjct: 683 KPGKFLLNRPLVMLLEGLGVPADEFMKLQNAAVEDTKAASRSLTKAAQILETHGLGTAFR 742
Query: 444 -TNILKELLICG---------YKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 493
T++ L G ++ + E F+ + L EL+ RI +P+ +++
Sbjct: 743 LTSVFLGLERLGVDLTRRGNRFRLEDE-FIHRAIAYAINHVLRELKHHARIPVPSSWTLV 801
Query: 494 GCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGD 553
G D L G+VF I + HG ++ +QG V++ ++P +HPGD
Sbjct: 802 GIADIHGVLKEGEVFACIQPS-----HGGEKIY----------LQGPVMITRSPVIHPGD 846
Query: 554 VRVLKAVNVPALHHMVD------CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 607
V++L+AV P + D V+F KG RP +E G DLDGD++ V ++ P
Sbjct: 847 VQMLRAVGRPPAGSIYDLEPIPNTVIFSIKGSRPTASELGGGDLDGDVFNVSQYFDIFPK 906
Query: 608 QQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEP 667
+ P Y A+ LD + DV ++ ++I ND+LG+IA + AD+ P +
Sbjct: 907 KCYMPASYATAERKMLDRPSDVGDVIDFVVDFINNDNLGLIATNWLIIADQSPESIFDDA 966
Query: 668 CLQL 671
CLQL
Sbjct: 967 CLQL 970
>gi|390597813|gb|EIN07212.1| RdRP-domain-containing protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 1217
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 186/679 (27%), Positives = 313/679 (46%), Gaps = 109/679 (16%)
Query: 128 KPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDL 187
KP + A + G+ + + PSR+ GP NRV+R + ++F+R+ F +ED
Sbjct: 392 KPRT-ATTCPSGMFSCYHITFCPSRMILEGPFPTQGNRVIREYSGYEEHFVRVDFREED- 449
Query: 188 DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF 247
L R D R+ + R+ L+ G + R F+FLA+SSS L++ + W
Sbjct: 450 ------GLQYRWDREVD-CRSFLAERVGRILKEGFELAGRHFQFLAYSSSALKQHAVWFV 502
Query: 248 A-----SRYGLTAAEIREWMGNF----------REIRNV------AKYAARLGQSFSSSK 286
+ + A IR+ +G+F R+ + + +KYAAR+ Q+F+++
Sbjct: 503 HPFEHHEKGSVDAYIIRDRLGDFSGAIDNNNETRDAKTIQLRMQPSKYAARMAQAFTATD 562
Query: 287 ETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV-ASKCGLKDNP------- 338
++ ++ D+ + IPD +GK ++ +DG G +S + A + A+ C KD P
Sbjct: 563 PSVRINEDQWQEIPD----LGKEPHLHTDGCGTISRKLADMIWAALC--KDRPYFQACKS 616
Query: 339 -PSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSK--YQP--CFL 392
P +QIR+ GYKG+V D T +++ LR SM K+ + T + +K ++P L
Sbjct: 617 SPDCYQIRFLGYKGIVTVDETLEGEQMCLRPSMNKFRAHKTPSAEIEIAKPFWKPTQVNL 676
Query: 393 NRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTN-----IL 447
NR LI +L G+ + F K Q EAVR ++ L G +N I+
Sbjct: 677 NRALIMILEDRGVSWKCFMKLQDEAVRDINTASFSIDNFVRMLSDRGAGLGSNYRLLYIM 736
Query: 448 KELLICGY--------KPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET 499
+ L G+ +P + PF+ +++ R L E++ I + + + G DE
Sbjct: 737 RNLAELGFDFKQRLRVQPLSHPFILRLVEFIRHHLLREIKHGASIPLRDAYLLPGVADE- 795
Query: 500 RTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL-----------VVVAKNPC 548
G Y + G ++F + +R VQG V+ ++P
Sbjct: 796 -------------GPAY-EARGHQNVFKLAENRIFACVQGPDDVEPKWLKGNCVIWRSPV 841
Query: 549 LHPGDVRVLKAVNVPA------LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDD 602
+HPGD++ + A+ P + + VV P G R + G DLDGD Y V
Sbjct: 842 VHPGDIQRVYAIGKPPEDQLCFFSRLKNVVVLPSVGERSLASCLGGGDLDGDEYCVSMLP 901
Query: 603 ELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRK 662
L+P +Q PP +Y P +++ LD +I+D+ ++ Y+ +D LG++++ H V AD+
Sbjct: 902 TLLPTEQQPPAEYPPVETLTLDRPAEIDDICDFIVEYVHSDVLGLLSDKHLVIADQSKDG 961
Query: 663 ARSEPCLQLAEKFSIAVDFPKTGVPAEIPPH-LYVKEYPDFMEKPD-----------KPT 710
R E CL+LAE S AVD+ K G+ + +K+ F KPD
Sbjct: 962 VRDEKCLRLAELCSQAVDYAKNGIAINLAKEKRAMKQLIPF--KPDWHAAEIISPRSTDY 1019
Query: 711 YESQNVIGKLFRAVKDIAP 729
YES +G L+R ++ P
Sbjct: 1020 YESSRALGHLYREIRLTEP 1038
>gi|302690464|ref|XP_003034911.1| hypothetical protein SCHCODRAFT_255915 [Schizophyllum commune H4-8]
gi|300108607|gb|EFJ00009.1| hypothetical protein SCHCODRAFT_255915 [Schizophyllum commune H4-8]
Length = 1237
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 204/817 (24%), Positives = 367/817 (44%), Gaps = 154/817 (18%)
Query: 48 DGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKEC 107
D P+ + F++ L++NG + ++S S++ I AL + Y +C
Sbjct: 337 DFAKFPWPVAFQLEALLRNGRITTGEIES-------------SLNAI-RALCETYPEHDC 382
Query: 108 CYEPSRWLTDQYRKY---MTSRSKPSSPAISLDD--------------GLVYVHRVQVTP 150
+ D RK+ + R SP D G + TP
Sbjct: 383 AR-----VGDLLRKFNFELGKRPATESPRACFDRIMKLFEFAELHITPGYFQCCHIIFTP 437
Query: 151 SRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRI 210
+R GP SNR++R + +F+R+ F DED L+ R D ++ +
Sbjct: 438 TRTVLEGPYPVQSNRIIRRYPGYEHHFIRVEFRDED-------RLAYRWDRTVDGSQF-V 489
Query: 211 YTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS------RYGLTAAEIREWMGN 264
R+ L NG +G R F FLA+S+S LRE S W Y +TA IR+ +G+
Sbjct: 490 RERVGGILANGFKLGGRSFVFLAYSTSALREHSVWYLNEFYHEELGYCITADYIRDSIGH 549
Query: 265 FREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEI--GK--TKYVFSDGIGKV 320
F E + YAARL Q+F++++ ++ + DE E + D+ GK + Y+F+DG+G +
Sbjct: 550 FPE--DSKLYAARLAQAFTATEPSVKIRRDEWEEMEDLSPPPPPGKRVSPYLFTDGVGTI 607
Query: 321 SAEFARKV-----------------ASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK-- 361
S ++ A +CG + +IR+ GYKG+VA D K
Sbjct: 608 SRSLGDRIWGKLISERGGDLTQAVAAGRCG-----SISGRIRFLGYKGMVAVDEEMDKDN 662
Query: 362 ---KLSLRDSMRKYES---ELTKLDVLAWSKY---QPCFLNRQLISLLSTLGIWDEIFEK 412
+ LR SMRK++S ++ + D+ + F N+ L+++L LG+ + FEK
Sbjct: 663 TGIHMRLRPSMRKFDSKEEDMWEADIEIARHFAYPNNMFTNKALVTVLENLGVGCDQFEK 722
Query: 413 KQREAVRQLDAILTDPLKAQEAL---ELMSPGENTNILKELLICGYKPDA---------- 459
Q+ AV ++ I D ++ L L +IL + G +
Sbjct: 723 LQQSAVASVERIHDDIDAWRDVLRSNNLCRTFRLAHILDNFVAMGLEMKGTPSRPRRAPL 782
Query: 460 ----EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG 515
PF + + R + L +++ R IP+ ++G DE G +++ AG
Sbjct: 783 PGFDSPFFKKIREVARMAILRDIKHDARFGIPDSYKLVGIADE------GPAYIK---AG 833
Query: 516 YRQLH--GESSLFSS---SRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------A 564
++ G+ +++ + ++G +++++P H GDV+ + A+ P +
Sbjct: 834 KENVYCLGDREIYACVQRTEGEDPVWLEGNCIISRSPVTHVGDVQRVHAIGRPPADMLSS 893
Query: 565 LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLD 624
+ + VV P G R + SG DLDGD+Y + ++L+ QQ+ P+D+ P ++ QL+
Sbjct: 894 FGKLKNLVVLPSVGDRSLCSMLSGGDLDGDLYDIIMCEDLLYSQQEKPLDFDPGETFQLN 953
Query: 625 HDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKT 684
++D+ + YI +D +G++++ V AD+ E C+++A+ S AVD+PK
Sbjct: 954 RPATVDDICNFIVEYINSDVVGLLSDRLLVIADQSKNGIFDEDCVKIAKLCSQAVDYPKQ 1013
Query: 685 GVPAEIP----PHLYVKEYPDF-----MEKPDKPTYESQNVIGKLFRAVK---------D 726
G+P ++ P +++ PD+ + D Y S +G+L+R ++ +
Sbjct: 1014 GIPVDLENGNLPRPLMRQKPDWHAAEVIRPRDNDYYRSDKALGRLYRNIQIREVEALSEE 1073
Query: 727 IAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAI 763
A T+ + TK + RR+ ED++DD++
Sbjct: 1074 EAASTTGVNAITKAIERRA----------EDYLDDSL 1100
>gi|389748402|gb|EIM89579.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1346
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 199/690 (28%), Positives = 318/690 (46%), Gaps = 100/690 (14%)
Query: 134 ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDID-----NFLRISFIDEDLD 188
+ L G Y H + TP+R GP SNRV+R ++ +ID NF+R+ F DED
Sbjct: 414 LKLSKGHFYCHHITFTPTRTILEGPNPTQSNRVIRKYQ-EIDPTFTENFIRVDFRDED-- 470
Query: 189 KIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA 248
LS R D T + R+ L+NG + R FEFLA+S+S LRE + W F
Sbjct: 471 -----RLSYRWDRDVDGTYF-LQQRVGHILKNGFELAGRDFEFLAYSTSALREHAVW-FV 523
Query: 249 SRYGLTAAE------------IREWMGNFRE-IRNVAKYAARLGQSFSSSKETLSVHMDE 295
+ L ++ IR+ +G+F IR +KYAAR+ Q+F+++ ++ V D+
Sbjct: 524 HPFHLPSSHPSHSGTYVNGHYIRQSLGDFSNVIRQPSKYAARIAQAFTATDPSVKVTRDQ 583
Query: 296 IEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV-ASKC------GLKDNPPSAFQIRYGG 348
E + D+ + +Y+ +DG+G +S E + A C G PSA+QIR+ G
Sbjct: 584 WEEMEDIGDD---DRYLHTDGVGTISLELGGMIWAELCESRLDHGGNTVRPSAYQIRFLG 640
Query: 349 YKGVVAADP-TSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCF-------LNRQLISLL 400
YKG+V D K+ LR SMRK+ + D AW + F LNR L+ +L
Sbjct: 641 YKGMVVIDHRLVGIKMRLRPSMRKF---VVDNDEDAWLEIARAFERPNSFSLNRALVMIL 697
Query: 401 STLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL---ELMSPGENTNILKELLIC---- 453
G+ E F Q E + L +D ++ +L M G + + E L+
Sbjct: 698 EDRGVRKESFISLQ-EQTKSLIYTSSDSIEKFVSLLRTHGMGFGYHLPFILEQLVKLGLD 756
Query: 454 -------GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET-----RT 501
G K FL +L+ L +++ K +I +P ++GC DE
Sbjct: 757 FKETNRDGSKAIENAFLGRVLRFAMNGCLRDIKHKAQIPVPGSYKLVGCADEGLAYIREG 816
Query: 502 LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 561
L+ V+ +G + + + S +F+ +G +++++P +HPGD++ + AV
Sbjct: 817 LDKDSVYTLPAGCIF------ACVQEGPGSETKFL-KGPCMISRSPVVHPGDIQRVWAVG 869
Query: 562 VPA------LHHMVDCVVFPQKGM------RPHPNECSGSDLDGDIYFVCWDD-ELIPPQ 608
P + + VV P R + G DLDGD Y + D+ L+P
Sbjct: 870 EPPKDKICFFKDLKNLVVLPSVADPSSDTDRSLASMLGGGDLDGDQYDIIIDNGSLMPEV 929
Query: 609 QDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPC 668
P DYT A + LD D ++D+ ++ YI +D LG++++ H AD+ C
Sbjct: 930 HSQPADYTGAGTRTLDRDATVDDICDFIVEYINSDVLGLLSDKHLTIADQSREGTFDHRC 989
Query: 669 LQLAEKFSIAVDFPKTGVPAEIP--PHLYVKEYPDFMEKP-----DKPTYESQNVIGKLF 721
+ LAE S AVD+PK G P +I P + PD+ + + YES +G LF
Sbjct: 990 MLLAELCSQAVDYPKNGKPVDISDLPRSLSRFKPDWHQAEVSGPRENDYYESDRALGHLF 1049
Query: 722 RAVKDIAPHTSCIRLFTKEVARRSYDPDME 751
R + ++ P + L +V + +PDM+
Sbjct: 1050 RNI-ELMPTQKGVPL---DVPTKPTNPDMD 1075
>gi|169623159|ref|XP_001804987.1| hypothetical protein SNOG_14810 [Phaeosphaeria nodorum SN15]
gi|160704927|gb|EAT77662.2| hypothetical protein SNOG_14810 [Phaeosphaeria nodorum SN15]
Length = 1674
Score = 222 bits (566), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 172/516 (33%), Positives = 260/516 (50%), Gaps = 57/516 (11%)
Query: 214 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAK 273
I L +GI I + F S+SQL+ S +M+A+ A +I E MG+ ++R+VAK
Sbjct: 109 ITKMLVSGITINAISYHFFGHSNSQLKSRSCFMYAASKEEVARKI-EGMGDLSKLRSVAK 167
Query: 274 YAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCG 333
+ R+G FSS++ + + + + I DV Y+F+DG G +S +FA+ +A +
Sbjct: 168 KSKRIGLLFSSAEVSTMLPSERCQDIDDVT----SKDYIFTDGCGLMSPQFAKLLAQRRN 223
Query: 334 L----KDNPPSAFQIRYGGYKGVVAADPTSS--KKLSLRDSMRKY-ESELTKLDVLAWSK 386
+ K PS +QIRY GYKGV+ DPT S ++ R SMRK+ +S V+ +SK
Sbjct: 224 IVFRDKRYLPSVYQIRYRGYKGVLTLDPTLSGQTQVQFRASMRKFKDSPDYSFAVVDYSK 283
Query: 387 -YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT----DPLKAQEALELMSPG 441
Y LN +++ LL TLGI ++ KQ + LD I DP + A + +S
Sbjct: 284 PYAFGSLNDEIVVLLHTLGISEKTLLAKQ---TQHLDFIQNVQGGDP---RSAFQFLSYI 337
Query: 442 ENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR--TKTRIFIPNGRSMMGCLDET 499
T + ++LL+ G + LS++ Q + ++++ R + RI +P R + G D T
Sbjct: 338 NRTELAEKLLLEGPESVRPTLLSLVKQEY--ARMINKRDEQRCRILVPKSRLLFGVCDPT 395
Query: 500 RT------LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGD 553
L G+ FV+I+ G R + I+ V+V +NPCLHPGD
Sbjct: 396 AKDGCPGRLKEGECFVRITQDG--------------DGRAQTIINTEVLVTRNPCLHPGD 441
Query: 554 VRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPM 613
++ K V++P H+VDC+VF +G RP + SG DLDGD +FV WD +L+P P
Sbjct: 442 LQKFKVVDIPEFSHLVDCIVFTTQGKRPSADLMSGGDLDGDKFFVTWDSDLVPSTVAEPA 501
Query: 614 DYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAE 673
Y + + DV + EYF Y N SLG + N + +A A S C QL
Sbjct: 502 QYPGGKELITFGDVTGDSRAEYFARY-TNASLGKVKNLYMKWA--RLGNAMSPQCQQLNR 558
Query: 674 KFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKP 709
FS VD G IP +L V + D +E P +P
Sbjct: 559 LFSQCVD----GNHIRIPQNLKV--FKD-LEDPPEP 587
>gi|407926953|gb|EKG19860.1| PhoH-like protein [Macrophomina phaseolina MS6]
Length = 1608
Score = 222 bits (566), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 157/486 (32%), Positives = 237/486 (48%), Gaps = 36/486 (7%)
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAAR 277
L++GI + F S+SQL+ S +FA +I E +G+F ++ V K A R
Sbjct: 17 LKSGIRFNGVHYNFYGHSNSQLKTRSCVLFADTRAAIHRKI-ESLGDFSKMTTVGKKAKR 75
Query: 278 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK-- 335
+G FSS++ + + + IPDV+ Y+F+DG G +S AR + +
Sbjct: 76 IGLLFSSAEMGVELAPERCADIPDVE----ANDYIFTDGCGLISPHLARSLVQSVHIAFR 131
Query: 336 --DNPPSAFQIRYGGYKGVVAADPTSSKKL--SLRDSMRKYES--ELTKLDVLAWSK-YQ 388
PS FQIRY GYKGV++ DP+ + R SM+K+ +LT L V+ +SK Y
Sbjct: 132 NVKYIPSVFQIRYRGYKGVLSLDPSMGSQCLAKFRSSMKKFRGGDDLT-LSVVDYSKPYT 190
Query: 389 PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILK 448
+LN +++ LL L + DE+F +KQ E + L+++ L + +S ++ +
Sbjct: 191 FGYLNDEVVLLLHALRVPDEVFLRKQAEHLHFLESVTR--LDVRMCFRFLSYCNRLDLAE 248
Query: 449 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 508
LLI G + M+ Q + + RI IP R + G D L G+
Sbjct: 249 RLLISGVEAVERDVRKMVGQEYERMLTKRNEQRCRILIPQSRLLFGVCDTKGLLKEGECV 308
Query: 509 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 568
V+++ G Q + IV V+V +NPCLHPGD++ +AV P L H+
Sbjct: 309 VRVTMDGDGQ--------------AQTIVGTQVLVTRNPCLHPGDLQKFRAVFHPELSHL 354
Query: 569 VDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQ 628
VDCVVFP G RP + SG DLDGD +FVCWD +LIP P +Y ++ +
Sbjct: 355 VDCVVFPTAGKRPSADLMSGGDLDGDKFFVCWDKDLIPTVASQPAEYPGPKAQIALKPIT 414
Query: 629 IEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPA 688
+D +YF Y N SLG + N +A S C QL FS+ VD + +P
Sbjct: 415 EDDRIDYFAQY-SNMSLGRVKNLFLAWA--RLHGPLSPQCQQLNRLFSLCVDGNRIKIPQ 471
Query: 689 EI--PP 692
++ PP
Sbjct: 472 DLQDPP 477
>gi|170094614|ref|XP_001878528.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
gi|164646982|gb|EDR11227.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
Length = 1051
Score = 222 bits (565), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 184/658 (27%), Positives = 303/658 (46%), Gaps = 86/658 (13%)
Query: 133 AISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS 192
A + L+ V +TP+R+ GP SN +R ++ DNF+R+ F DED
Sbjct: 204 ARGFNASLISAAHVTITPTRMLLEGPLPTQSNNAIRKYKGCDDNFIRVDFRDEDRSSYK- 262
Query: 193 TDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG 252
R D++ R R+ L+ GI+I R F+FLA+S+S LRE + W +S
Sbjct: 263 -----RNQDVDDMSVLR--ERVGDVLKQGIMIAGRHFQFLAYSTSSLREHAVWFMSSFES 315
Query: 253 ----LTAAEIREWMGNFREI-RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK---- 303
+T ++ +G+F + + +KYAAR+ Q FS++ ++ +H E E + D++
Sbjct: 316 GGEMITPQKVVRDLGDFSALAQQPSKYAARIAQKFSATDPSVHIHGHEWERVDDIEYIEE 375
Query: 304 ---------IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNP---------PSAFQIR 345
IE KT + F+DG+G +S +++ L++N PSA+QIR
Sbjct: 376 RTIRNDDGDIETRKTVHCFTDGVGTISESLGQEIFET--LRNNEGRLEEKAPLPSAYQIR 433
Query: 346 YGGYKGVVAADP-----TSSKKLSLRDSMRKYES--ELTKLDVLAWSKY-QPCFLNRQLI 397
+ G KGVV D +S ++ LR SM K+ S + L++ +Y + C+LNR L+
Sbjct: 434 FMGSKGVVVVDKQLDKNSSGIRMRLRPSMIKFPSLAQSEPLEISEAFRYPKLCYLNRPLV 493
Query: 398 SLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPG-----ENTNILKELLI 452
L LG+ + F Q A+ + I + + +E G + +ILK
Sbjct: 494 MFLEDLGVRLQTFLDLQNAAIAEAQTIDDSLEQFRSIMETHRGGLGKSFDFPDILKHFED 553
Query: 453 CGY---KPDAEP-----FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET---RT 501
G+ D P F+ + R L E++ RI IP+ ++G DE R
Sbjct: 554 DGFDLHSQDGRPGIDNQFIKQLRNVARIEVLREIKHSARIKIPDSYLLVGVADEGPAYRK 613
Query: 502 LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 561
Y V+ G Y + + ++ + G ++++P HPGDV+ ++ +
Sbjct: 614 DGYQNVYELPEGHIY-------ACVQKAGDKEPTWLSGSCSISRSPVAHPGDVQRVRCIG 666
Query: 562 VPA------LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDY 615
P H+V+ VV P G R + G DLDGDIY V + L+P Q P Y
Sbjct: 667 KPPEDKLCLFSHLVNVVVLPSVGKRSLASCLGGGDLDGDIYSVIMLEPLLPTQMVVPASY 726
Query: 616 --TPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAE 673
P +++ ++ E V ++ YI +D LG+++N V AD+ + C LA
Sbjct: 727 DSLPPRALPPGQSIE-EAVCDFIVEYIHSDVLGLLSNRLLVIADQSKEGVFDQDCEHLAV 785
Query: 674 KFSIAVDFPKTGVPAEIP----PHLYVKEYPDF----MEKPDKPT-YESQNVIGKLFR 722
S AVD+PK G P ++ PH ++ PD+ + P + Y+S +G +FR
Sbjct: 786 LCSQAVDYPKQGNPVDLSGGALPHPLIRCKPDWQSAEINAPRQTDYYKSTRALGVMFR 843
>gi|449547217|gb|EMD38185.1| hypothetical protein CERSUDRAFT_113336 [Ceriporiopsis subvermispora
B]
Length = 1207
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 206/746 (27%), Positives = 351/746 (47%), Gaps = 100/746 (13%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH---ALDKLYHLKEC 107
+L + + F+I ++++NG + N L+D + P++ ++ A D L H E
Sbjct: 319 SLDWPVAFQIEMMLRNGLI-------NTEELMDTLQKPINDLAKKYPATAGDILRHYTEQ 371
Query: 108 --CYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNR 165
+P + + + ++ IS G + V TP+++ GP + SNR
Sbjct: 372 LRVRDPKETPLQCFNRVVPTQYGLEPLQIS--GGNFTCYHVTFTPTKMVLEGPYVIQSNR 429
Query: 166 VLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIG 225
V+R + D F+R+ F DED L R + D + + ++ R+ LR G +
Sbjct: 430 VIRRYVGFQDRFIRVDFRDED-------RLQYRWAKEVDGS-SLLHDRVGGILRKGFDLA 481
Query: 226 DRKFEFLAFSSSQLRESSAWMFAS----RYGL-TAAEIREWMGNF---REIRNVAKYAAR 277
R+FEFLA+S+S LRE + W R GL TA IRE +G+F + I+ +KYAAR
Sbjct: 482 GRRFEFLAYSTSALREHAVWFMNPFEHPREGLVTAQGIRESLGDFSGSKVIKQPSKYAAR 541
Query: 278 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV------ASK 331
+ Q+F+++ ++S+ D+ E +PD +G+ Y+++DG+G +SAE + AS
Sbjct: 542 MAQAFTATDPSVSITRDQWETVPD----LGEDPYLYTDGVGTISAELGDMIWDALCAASP 597
Query: 332 CGLKDN-PPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKY-----ESELTKLDVL-A 383
G + PSA+QIR+ G+KGVVA D K+ LR SM K+ E K+++ A
Sbjct: 598 DGKRRGVKPSAYQIRFLGFKGVVAVDERLQGIKMRLRPSMDKFKARADEEAEAKIEIARA 657
Query: 384 WSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN 443
+ C+LNR L+++L G+ F + Q ++ +A L+ S G
Sbjct: 658 FDYPGTCYLNRPLVTVLEDRGVDKSAFMRLQERIKAEIYTASDSLAQAISVLKANSIGNG 717
Query: 444 TN---ILKELLICG----YKPDAE----PFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 492
IL+ L G Y+ + + F+ +LQ + L ++ RI IP +
Sbjct: 718 YKLGFILQGLKNIGMGLPYEKNVQVLNDSFIDRLLQYAKNYVLRNIKHDARIPIPESYLL 777
Query: 493 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSR---SRQRFIVQGLVVVAKNPCL 549
+G DE G + + G + E +++ + + ++G ++V ++P +
Sbjct: 778 VGIADE------GPAY-EAEGCENVYILPEGHIYACVQHPDDPEPIYLEGNIMVTRSPTV 830
Query: 550 HPGDVRVLKAVNVPA------LHHMVDCVVFPQKGMRPHPNECSGS------------DL 591
HPGDV+ + A+ P ++ + VV P G C G DL
Sbjct: 831 HPGDVQQVTAIGKPPEGKICFFRNLKNVVVLPSTG------NCGGDCPRSLASCLGGGDL 884
Query: 592 DGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANA 651
DGD+Y V L+P + Y A + LD D ++D+ ++ YI +D LG++++
Sbjct: 885 DGDLYQVVKYAPLVPLESQLAGSYESAGTHTLDRDSTVDDIIDFIVEYIDSDVLGLLSDR 944
Query: 652 HTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEI--PPHLYVKEYPDFMEKPD-- 707
H + AD+ CL+LA S AVD+PK G+P + P + P++ + D
Sbjct: 945 HLMIADQSKYGVNDPSCLELARLCSQAVDYPKNGIPVDKGDAPRTLLPYKPNWKQAEDND 1004
Query: 708 -KPT--YESQNVIGKLFRAVKDIAPH 730
+PT YES +G+LFR + P+
Sbjct: 1005 SRPTDYYESNRALGELFRNISITEPN 1030
>gi|341877528|gb|EGT33463.1| hypothetical protein CAEBREN_18731 [Caenorhabditis brenneri]
Length = 1708
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 221/872 (25%), Positives = 369/872 (42%), Gaps = 159/872 (18%)
Query: 138 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 197
+G + +T +R + PE+ +SNR + D +R + D++ K+ L
Sbjct: 443 EGFRKTRKALLTTTRKIYLAPEMIMSNRAVTGVDHDGTRIIRTTIRDDNFQKMRQYQLGD 502
Query: 198 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA--------- 248
S +++ L+ G +I R F +LA S+SQ+RE +
Sbjct: 503 LLSE-----------KVMRRLKKGFVIMGRSFSYLASSNSQMREGGTYHMERFNKKQLDL 551
Query: 249 -----------SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHM--DE 295
S Y R+ +G F + +++K ARLGQ F+ ++ + + + +
Sbjct: 552 DYPGIHLRKIPSGYKPKILAYRKKLGKFEKTGSISKAMARLGQCFTQARACIGIEIGNQD 611
Query: 296 IEIIPDVKIEIGKTK-----YVFSDGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGY 349
+++PD IG Y+++DG+G +SA A+K+A L + PSA+QIR+ G
Sbjct: 612 YQMVPDA---IGGKNANGAPYMYTDGVGMISARLAQKIAKSMKLPNGFVPSAYQIRFRGL 668
Query: 350 KGVVAADP---------------------TSSKKLSL---------RDSMRKYES----- 374
KG++ DP T+S+++ L R+S K+ S
Sbjct: 669 KGMLVVDPSLDNKADYFKDIYRRGLMRKETNSEEIDLAPYTFKCLFRESQMKFHSSKGGK 728
Query: 375 ELTKLDVLAWSKYQPCFLNRQLISLLSTLG----------IWDEIFEKKQREAVRQLDAI 424
+ ++++ WS P LNR I++L + I I E E D I
Sbjct: 729 DKWPIELVKWSSPTPVTLNRPFINILDQVSALQSLDCHKRICGRIEELLDIEMDSFTDCI 788
Query: 425 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 484
+ + K + LE M + G+ EPF +++ ++ L K I
Sbjct: 789 INED-KCRSKLEGMP--RRVHFPSLWRRNGFSLCTEPFFRALIKAAIDFSMMRLLKKVNI 845
Query: 485 FIPN--GRSMMGCLDETRTLNYGQVFVQIS-GAGYRQLHGESSLFSSSRSRQRFIVQGLV 541
IP+ GRSM G DET L YGQVFVQ + + G S I++G +
Sbjct: 846 PIPSNVGRSMFGVTDETGLLQYGQVFVQYTENVNNKHPSGVSGK----------ILKGPL 895
Query: 542 VVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWD 601
+V K P + GDVR+ +AV++P L H+ + +VFPQ G R P+E +GSDLDGD Y V WD
Sbjct: 896 MVTKFPSMCEGDVRMYEAVDIPELRHLENVIVFPQNGPRSMPDEMAGSDLDGDEYAVIWD 955
Query: 602 DELIPPQQDPPMDYTPAQ-SMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREP 660
L + + Y + +L+ D E + ++ ++ + +GI A H +D+
Sbjct: 956 PFLFFERNETAFAYCNDKPEKKLNIDEMDEGMNVFYAEFMNQEDVGITATNHLHQSDQ-- 1013
Query: 661 RKARSEPCLQLAEKFSIAVDFPKTGVPAE---------------IPPHLYVKEYPDFMEK 705
S+ C LAEK ++ +D+ K+GV +PP ++ PDF
Sbjct: 1014 YGINSKVCNILAEKNAMLLDYSKSGVAPSPLTFNWDKHPETKKWVPPEKSERK-PDFANN 1072
Query: 706 --PDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAI 763
TY+S ++G L R ++ + + ++ D + G+E + A
Sbjct: 1073 RFSMNQTYQSSRLLGTLHRELRSV---NDVVATSAEKQVPLVLDDLLVWTGWEQYKSVAE 1129
Query: 764 YHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKM-SKSFTKRRD-------AEAIGMAVRA 815
Y+ L ++M+ +G+ TEAE+ +G ++ ++ K +D I V A
Sbjct: 1130 AQLLRYNGSLRSIMETFGVNTEAEVFSGYYREIRNRQSDKEQDDMSQYCTENVIETQVTA 1189
Query: 816 LRKEARAWFKEKSGSDTEDD-AYAKAS------AW------YHVTYHPD----------Y 852
L ++ RA F E+ T D AY + + W V P Y
Sbjct: 1190 LYRKFRAEFFEEFAEHTPDSPAYMRLTVPENERVWEEKDVLRRVCRKPSNAMMAKAVAYY 1249
Query: 853 WGCYNQGMNR-DHFLSFPWCVYDRLVEIKKDK 883
CY + + D LSF W YD L ++ K
Sbjct: 1250 RTCYQNAVEKGDRKLSFAWLAYDILNTVRGKK 1281
>gi|409051493|gb|EKM60969.1| hypothetical protein PHACADRAFT_168316 [Phanerochaete carnosa
HHB-10118-sp]
Length = 968
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 179/596 (30%), Positives = 289/596 (48%), Gaps = 67/596 (11%)
Query: 100 KLYHLKECCYEPSRWLTDQY----RKYMTSRSKP--SSPAISLDDGLVYVHRVQVTPSRV 153
K++ + + P+ +TD + R+Y + K P + D L V VTP+
Sbjct: 385 KMFGYTDDSHSPTESITDLFSRCEREYAPVKRKRLRGPPNLDTFDCL----HVTVTPTTH 440
Query: 154 YFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTR 213
GP SNRV+R + + D F+R++F+DE TDL R D R I R
Sbjct: 441 RPEGPYPERSNRVMRTYSNNHDCFVRVNFVDE-------TDLQFRFDREVD-GRAFIKRR 492
Query: 214 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL------TAAEIREWMGNFRE 267
+ L NGI++ R FEFLA+S S L+E + W F + L A I +G+F
Sbjct: 493 VGEVLANGIVVAGRYFEFLAYSQSALKEHAVW-FVKEFLLPDGTVVNACTIIAGLGDFTR 551
Query: 268 IRNV----AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAE 323
R + A+Y AR+ Q+F+++ +++V +E+ +PD++ G + F+DG+G +S
Sbjct: 552 DRQLIYCPARYGARISQAFTATDSSVTVEAEEVIEVPDIEDPTGT--WCFTDGVGTMSVR 609
Query: 324 FARKV-----ASKCGLK-DNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYES-E 375
AR++ A + G + P A QIR+ G KG+++ D T S + + LR SM K+E+
Sbjct: 610 LAREIWKVLAARRRGSRWQTYPRALQIRFQGSKGMLSVDHTLSGRAICLRPSMIKFEALN 669
Query: 376 LTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEA 434
+++V A+++ P +LNR LI +L LG+ E+F+ Q AV + KA
Sbjct: 670 SNQIEVARAFNRPGPFYLNRPLIMILEHLGVQHEVFQDLQDAAVMDAQQSVESLEKAARL 729
Query: 435 LELMSPGEN---TNILKELLICGYKPDAEPFLSMMLQTFRASKLL-ELRTKTRIFIPNGR 490
LE G + T++ L P E + F + +L EL+ RI +PN
Sbjct: 730 LETFGLGASFRLTSVFLSLHKLAVGPLTEDNFWRKMMDFAVNHVLRELKHHARIPVPNAW 789
Query: 491 SMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLH 550
+++G D L +VF G Y G ++ + G V+V ++P +H
Sbjct: 790 NLVGVADVHGYLEEHEVF----GCIY-PTDGTGPIY----------LDGRVLVTRSPTIH 834
Query: 551 PGDVRVLKAVNVPA------LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDEL 604
PGDV+V++ + P + + +VF KG RP P+ G DLDGD Y V D L
Sbjct: 835 PGDVQVVQGIGRPPPGSPFERESLRNTLVFSVKGTRPLPSYLGGGDLDGDEYRVTMLDPL 894
Query: 605 IPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREP 660
+PP+ P YTPA+ LD ++DV ++ YI +D + + ++F + P
Sbjct: 895 LPPRTYLPASYTPAEKKLLDRPSTMKDVADFVMEYINSDVR--VNSVESLFKNNRP 948
>gi|159123458|gb|EDP48577.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus A1163]
Length = 809
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 156/496 (31%), Positives = 243/496 (48%), Gaps = 52/496 (10%)
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAAR 277
L+ GI++ + F SSSQLR + ++ AE+ E +G+F I+ VAK A R
Sbjct: 109 LKEGIILNGVLYSFYGHSSSQLRSRACYLLRGSKN-EVAELVESLGDFSGIKTVAKKAKR 167
Query: 278 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 337
+G FSS + V E+I D++ + Y F+DG G V A+ AR ++ K +
Sbjct: 168 IGLLFSSCHALMKVPDGTYEVIDDIEF----SGYNFTDGCGLVGAKTARVLSQKLSIISR 223
Query: 338 P----PSAFQIRYGGYKGVVAADPTSSKK--LSLRDSMRKYESELTK-LDVLAWSKYQPC 390
P+ +QIR+ GYKGVV +P + R SMRK+ + V+ +SK QP
Sbjct: 224 NTRYHPAVYQIRFKGYKGVVMLEPQMPPQYWFQFRRSMRKFSGIGDRSFAVVEYSKTQPA 283
Query: 391 -----------------FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 433
+LN ++I LL TLG+ E+F +KQ+E ++L +T+P
Sbjct: 284 TPLFYSLPLMVQPYTYGYLNDEVILLLHTLGVSAEVFLRKQKEHFQRLQESVTEP---TV 340
Query: 434 ALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR--TKTRIFIPNGRS 491
A + ++ ++L++ G + + S++ + K+L R K RI +P R
Sbjct: 341 AFTFLCSLNRFDLAEKLVLHGIERVSGALRSLVADEHK--KMLNKREDQKCRILVPESRL 398
Query: 492 MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 551
+ G D L G+ F++++ ++G R R IV VVV +NPCLHP
Sbjct: 399 VFGVCDPRGVLQEGECFLRVTD----DMNG---------GRPRTIVGCEVVVTRNPCLHP 445
Query: 552 GDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP 611
GD+R LKAV+ P L H+ DC+VF KG RP ++ SG DLDGD +FVCWD +L+P
Sbjct: 446 GDLRKLKAVDRPELSHLRDCIVFAVKGERPAADQMSGGDLDGDTFFVCWDPDLVPSTVSE 505
Query: 612 PMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQL 671
Y P + ++ ++ EYF Y + SLG +A + A S C ++
Sbjct: 506 AAHYPPGREPFAVEEITVDHRIEYFARY-TSISLGRTKKLFLAWAIL--KGAFSVECQEI 562
Query: 672 AEKFSIAVDFPKTGVP 687
S+ VD + +P
Sbjct: 563 NRLHSLCVDGNRIKIP 578
>gi|116200327|ref|XP_001225975.1| hypothetical protein CHGG_08319 [Chaetomium globosum CBS 148.51]
gi|88179598|gb|EAQ87066.1| hypothetical protein CHGG_08319 [Chaetomium globosum CBS 148.51]
Length = 1176
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 179/597 (29%), Positives = 273/597 (45%), Gaps = 64/597 (10%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
+ R VTPSR+ GPE NRVLR + D F+R F DE+ DL +
Sbjct: 426 IFRAVVTPSRITLHGPEPEPMNRVLRKYP-DHSYFIRTQFCDEN-----GQDLFFNARVS 479
Query: 203 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW- 261
D IY R S L NGI + R ++ L FS S LR SAW+ A + +I
Sbjct: 480 LD----SIYDRFKSVLSNGIQVAGRVYKLLGFSHSSLRAHSAWLSAPFFHQGQVQIPTLI 535
Query: 262 ---MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIEIGKTKYVFSDG 316
+GNF +I++ A+ AAR+GQ+FS + + + +E+ I D I + + VFSDG
Sbjct: 536 VTGLGNFDKIKSPARRAARIGQAFSETPWAIDLVAHSVEVWEIDD----IVRNEEVFSDG 591
Query: 317 IGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESE 375
+GK+S + AR V P+ FQIR G KG++A DP K + +R SM K++S
Sbjct: 592 VGKLSQDVARLVYDVIPRSKGFPTCFQIRQAGAKGMLAIDPGLGGKVICIRPSMSKFDST 651
Query: 376 LTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEA 434
+L++ S P LNRQLI +L +G ++ F Q +++L I +
Sbjct: 652 DKQLEICDMASNPMPMVLNRQLIKILEDMGAPNQWFLNLQSRELQRLRTISSTVYNTASF 711
Query: 435 LELMSPGENTNI---LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRS 491
L GE+ + L+++ G + FL ++ S+L L+ K RI + NG +
Sbjct: 712 LRAQRIGESIRLHKFLRQIETMGLDYRRDDFLRGAVEAVLLSELRLLKHKARIPVRNGMT 771
Query: 492 MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 551
+ G +DET L G+V+V F R P P
Sbjct: 772 LFGIMDETGFLKEGEVYVT---------------FDPEEDRH-----------SQP---P 802
Query: 552 GDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD- 610
G RVL + + G R N+ SG DLDGD++ + WD ++ +
Sbjct: 803 GPGRVLSSSAI--------ASSSASGGERSPSNQLSGGDLDGDVFHIIWDPAVVNAVRTF 854
Query: 611 PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQ 670
P Y Q ++LD V ED+ +F +++ D LG+IA H + AD+ + C +
Sbjct: 855 KPAAYPRVQPLELDRPVTPEDIAAFFVDFMRTDHLGVIATRHMILADQREKGTLDGDCKK 914
Query: 671 LAEKFSIAVDF-PKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKD 726
LAE S A+ K+ + E + D P Y S ++G+L+RAV++
Sbjct: 915 LAELHSAAITIHDKSAIDMEEHFAPRGDDDDDDDSGPRHQYYRSDKILGQLYRAVEE 971
>gi|260793153|ref|XP_002591577.1| hypothetical protein BRAFLDRAFT_105111 [Branchiostoma floridae]
gi|229276785|gb|EEN47588.1| hypothetical protein BRAFLDRAFT_105111 [Branchiostoma floridae]
Length = 3516
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 168/523 (32%), Positives = 255/523 (48%), Gaps = 60/523 (11%)
Query: 214 ILSTLRNG--ILIGD---RKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREI 268
+ + LR+G + +G R + F S+SQLRE + ++ + G F I
Sbjct: 108 VSAVLRSGFKVTVGKGQRRHYVFFGHSASQLRERTCILYDQGVLGPWERLVNGFGEFEAI 167
Query: 269 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV 328
+N +K AAR+G S++ + L + EI+ D++ + + F+DG G +S ARK+
Sbjct: 168 KNPSKRAARIGLLLSTATKCLELDEKEIDHTSDIE----RDGFTFTDGCGFISVACARKI 223
Query: 329 ASKCGL------KDNP-PSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDV 381
+ +D P PS Q R G KGVV DP+ + +R S K++ +L V
Sbjct: 224 MQDKDISERYRHQDPPVPSVIQFRMKGCKGVVMTDPSLPNGVCIRPSQEKFKWKLPPPHV 283
Query: 382 LAWSK------YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL 435
Y LN+Q I +LS LGI DE+F KQ ++LD + TD + A
Sbjct: 284 FGVCDDGISQPYAFGQLNKQYIMMLSALGIKDEVFLSKQETYFKELDCLETD---KEVAF 340
Query: 436 ELMSPGENTNILKELLICGYKPDAEP------FLSMMLQTFRASKLLEL-RTK------T 482
+ + + L PD E F S + + +A+KL +L TK
Sbjct: 341 RHLCARGYIGLAERLFSREGGPDNETLEILRGFRSRVRRPPKANKLHKLLNTKPEPARAL 400
Query: 483 RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVV 542
+I I R++ G D + TL GQ F Q + + G+ +F+ ++ V
Sbjct: 401 KIPIEKSRNVFGVCDPSGTLEPGQCFFQAT------VRGKMQVFADTK----------VA 444
Query: 543 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDD 602
V K PC HPGD RVL+ VNV H+VDCVVFP +G RPH +E +GSDLDGD +FVCWD
Sbjct: 445 VVKCPCYHPGDFRVLQCVNVEDCRHLVDCVVFPVQGERPHADEIAGSDLDGDKFFVCWDP 504
Query: 603 ELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRK 662
+L+P ++ P+ Y ++ + + V I D+ F NY + ++ + +AD +
Sbjct: 505 DLVPECEEAPLSYPGGEAAKKER-VSIGDLISVFANY-NSRTVSRLNELFNRWAD--VKG 560
Query: 663 ARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEK 705
S C ++A+ FS AVD KTG +IPP L + PD EK
Sbjct: 561 VTSSECRKIAKLFSTAVDTAKTGKGVDIPPRLL--KPPDAQEK 601
>gi|225680005|gb|EEH18289.1| RNA-directed RNA polymerase Rdp1 [Paracoccidioides brasiliensis
Pb03]
Length = 1258
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 137/402 (34%), Positives = 216/402 (53%), Gaps = 20/402 (4%)
Query: 460 EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL-NYGQVFVQISGAGYRQ 518
+PF++ +L+ +R ++ L+ K +I I G ++GCLDET +L Y + GA Y Q
Sbjct: 597 DPFVTSLLELWRVWQIKYLKEKAKIAIDKGAFLLGCLDETGSLKGYFRSKRLGGGATYEQ 656
Query: 519 -LHGESSLFSS--SRSRQRF-IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVF 574
L +F S + +++GL ++A+NP LHPGD+RV+KAV++P LHH+ D VV
Sbjct: 657 KLDCLPEIFVQILRHSEGTYEVIEGLCILARNPSLHPGDIRVVKAVDIPGLHHLKDVVVL 716
Query: 575 PQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ-DPPMDYTPAQSMQLDHDVQIEDVE 633
PQ G R + CSG DLDGD Y V WD +L+P + PMDY+ +S LD DV ++D+
Sbjct: 717 PQTGDRDIASMCSGGDLDGDDYVVIWDQDLLPKDWFEEPMDYSAPKSKVLDRDVTVDDII 776
Query: 634 EYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPH 693
++F +Y+ ND L IA AH AD + E CL+LA S AVD+ K+G+P +
Sbjct: 777 KFFVSYMQNDRLPQIALAHLAIADYSDDGVQDEKCLRLATLHSAAVDYNKSGIPVRMNQD 836
Query: 694 LYVKEYPDFMEK---PDKPTYESQNVIGKLFRAVK----DIAPHTSCIRL-FTKEVARRS 745
L K++P FME+ Y S+ ++G+L+ ++ H++ RL F + + +
Sbjct: 837 LRPKKWPHFMERKFAKKDSQYTSRKILGQLYDIAGGVYLNLQSHSAKGRLPFDQRILNAN 896
Query: 746 YDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD 805
++ D ++ F + KG YD L +M + I++E E+ + ++ + +
Sbjct: 897 FEIDEKLLSFAKEL------KGEYDADLRRIMAQHEIQSEEEVWSTFVLSHANMSKDYKF 950
Query: 806 AEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVT 847
E IG ALR++ R EK+G A A Y VT
Sbjct: 951 HEEIGRISSALRQKFRMLCHEKAGGKDFKSLAPLAIAMYRVT 992
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 131/221 (59%), Gaps = 15/221 (6%)
Query: 146 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE-DLDKIHSTDLSPRGSSATD 204
+VTPS +Y+ P I+ NRV R +R D FLR+ F DE ++ KI S+A
Sbjct: 386 AEVTPSTIYYKPPSIDTGNRVFRRYREYADRFLRVRFTDEKNMGKIFPY------SNANI 439
Query: 205 ITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGN 264
+ +YTR+ T++NGI IGDR +EFLAFS++QLRE +A+ FAS LTAA IR +G
Sbjct: 440 VCMNEVYTRVTLTMKNGITIGDRCYEFLAFSNAQLREHAAYFFASLPHLTAANIRAQLGK 499
Query: 265 FREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEF 324
F IRNVAK+AAR+GQ FSS++ + +EI +I + Y FSDG+G +S
Sbjct: 500 FNPIRNVAKHAARVGQCFSSTRALTGCPVQIVEI-----DDIERNGYTFSDGVGLISKFL 554
Query: 325 ARKVASKCG---LKDNPPSAFQIRYGGYKGVVAADPTSSKK 362
A+ + S+ L PPS FQ R GG KG++ + ++
Sbjct: 555 AQMIQSEFAIETLSGEPPSVFQFRLGGCKGILTVSSKAHRR 595
>gi|389751599|gb|EIM92672.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1228
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 192/638 (30%), Positives = 306/638 (47%), Gaps = 74/638 (11%)
Query: 129 PSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD 188
P SP ++ D G+ + VTP+ + GP SNRV+R + +D D FLR+SF+DE+
Sbjct: 408 PPSPFLN-DPGVFESFHIAVTPTIMALEGPLPERSNRVMRMYPKDHDCFLRVSFMDEN-- 464
Query: 189 KIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF- 247
L R + D I + I L G+++ RKF FL +S S L+ + W
Sbjct: 465 -----RLQYRSNRDID-GPLFINSWITRILHEGMVVAGRKFRFLGYSQSALKSHTVWFVL 518
Query: 248 --ASRYGLTAAEIREWMGNFREIRN-------VAKYAARLGQSFSSSKETLSVHMDEIEI 298
R L I +G F ++ A+Y AR+ Q+F+++ ++ V +E+ +
Sbjct: 519 DDPERPELRVENIIRGLGQFDNLKYDRQLIYCPARYGARISQAFTATDPSIVVRAEEVFL 578
Query: 299 IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNP----------PSAFQIRYGG 348
+ D+K + ++ F++G+G +S A+ ++ LKD+ P AFQ+R+ G
Sbjct: 579 LEDIK----RGQWCFTEGVGTLSRAMAKAISKT--LKDSGKRAFRRLTTHPGAFQVRFQG 632
Query: 349 YKGVVAADP-TSSKKLSLRDSMRKYESELTKLDV---LAWSKYQPCFLNRQLISLLSTLG 404
KGVV DP + +R SM K+E+ LDV A+ + +LNR LI +L LG
Sbjct: 633 SKGVVTVDPRLRGNAICVRPSMIKFEAP-ESLDVEIAQAFDRPSKYYLNRPLIMILEALG 691
Query: 405 IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL-ICGYKPDAEPFL 463
+ +F++ Q A+ Q+ E +E G + + L + +A P
Sbjct: 692 VPYRVFDRLQTRAITQVHKASRSLRGLAEIMEAYGLGTSYRLPSIFLSLSKLHVEAPPDD 751
Query: 464 SMM--LQTFRASKLL-ELRTKTRIFIP-NGRSMMGCLDETRTLNYGQVFVQISGAGYRQL 519
S + F +L +L+ RI + +G +++G D L +V+ I R
Sbjct: 752 SFFHRVNDFTVHHILRDLKHHARIPLDRHGWTLVGVADIHGWLREKEVYAYI-----RLP 806
Query: 520 HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP-----ALHHMVDCVVF 574
GE+ F ++G V+V+++P +HPGDV+VL AV P + + +VF
Sbjct: 807 DGEA-----------FYLEGRVMVSRSPTIHPGDVQVLTAVKPPHGSIYLREPLANTLVF 855
Query: 575 PQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEE 634
+G RP G DLDGD+Y V EL+PP+ P +Y PA LD I D+ +
Sbjct: 856 SIQGTRPVYTGLGGGDLDGDLYNVTTLRELMPPKNYHPANYDPAVKRILDRRSTIHDIAD 915
Query: 635 YFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVP--AEIPP 692
+ +YI +D +G++A + AD+ P+ CL L E S AVD+PK+G P A+ P
Sbjct: 916 FVADYINSDIIGLVAINWLIIADQSPQGIFDPDCLSLCELHSNAVDYPKSGNPVSAKAIP 975
Query: 693 HLYVKEYPDFME------KPDKPTYESQNVIGKLFRAV 724
L PD+ K Y+S+ IG+LFRAV
Sbjct: 976 FLKFSAKPDWNAPETVDLKDTANYYQSEKAIGRLFRAV 1013
>gi|392587026|gb|EIW76361.1| RdRP-domain-containing protein, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 935
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 228/919 (24%), Positives = 383/919 (41%), Gaps = 154/919 (16%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 110
+L + + F++ L+ NG LL++ + P +S EH D L E
Sbjct: 55 SLDWPVAFQVAALLHNG-----LLNTQEIESIRPIITQLSNKSAEHTGDTLRLFTEKTRS 109
Query: 111 PSRW-----LTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNR 165
+ + L D+ Y S +P G + V +TP+R+ GP I SNR
Sbjct: 110 QTSFRQPLELLDELVNYRASNQPRRTPPA----GHFFCSHVTITPTRMLLEGPYITQSNR 165
Query: 166 VLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIG 225
V+R + + D+F+R+ F +E+ K R D+ + +R+ + L+ G+ +
Sbjct: 166 VIRKYDQFKDHFIRVEFREENRQKY-------RWEREVDVLEF-LTSRVGAKLKGGVDVA 217
Query: 226 DRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNV-AKYAARLG----- 279
R+F F+A+S S LR S W +I + +GNF N AK AAR+G
Sbjct: 218 GRRFSFVAYSPSALRNHSLWFVCEEGFRPPVQILKELGNFSATTNQPAKRAARMGVSTNA 277
Query: 280 ------------QSFSSSKETLSVHMDEIEIIPDVK---IEIGKTKYVFSDGIGKVSAEF 324
Q+FS+++ ++ V D+I IPD+ + +VF+DGIG +S +
Sbjct: 278 CYVPQCTKASFQQAFSATQPSIKVSKDQIVEIPDITGPHNNPARPPHVFTDGIGTISPKL 337
Query: 325 ARKVASKCGLKDNPPSAFQIRYGGYKGVVAAD-PTSSKKLSLRDSMRKY----ESELTKL 379
++ + P AFQ+R G KGV D K + R SM+K+ ESE ++
Sbjct: 338 RDRICEALSIS-TKPDAFQVRCAGLKGVFVVDHQLEGKIMCPRPSMKKFLPLDESEDAEI 396
Query: 380 DVL-AWSKYQPCFLNRQLISLLSTLGIWDEIF----------EKKQREAVRQLDAILTD- 427
+++ A+ K FLNR L+ +L G+ E F + ++V Q A+L
Sbjct: 397 EIVRAFDKPGRSFLNRPLVMVLEDRGVKTEGFLELFNDAVADARTAHDSVDQFVAVLQKH 456
Query: 428 ----PLKA-QEALELMSPGENTNILKELLICGYKPDAEP----FLSMMLQTFRASKLLEL 478
P + Q L+L + G L+ D E FL+ + L ++
Sbjct: 457 RLGIPYRLDQTLLKLKALG---------LVLRTGQDQESLDTDFLARVRLCVIKHILRDI 507
Query: 479 RTKTRIFIPNGRSMMGCLDETRT-LNYGQ--VFVQISGAGYRQLHGESSLFSSSRSRQRF 535
R RI IP ++G DE + +N G+ VF G Y + + S + ++
Sbjct: 508 RHSARIPIPGSYQLVGVADEGQAYINAGKENVFTLRQGQIY------ACIQDPSDAEPQW 561
Query: 536 IVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFPQKGMRPHPNECSGS 589
+ QG V++++P +HPGDV+ + A+ P A + + VVF +G P N C G
Sbjct: 562 L-QGTCVISRSPVVHPGDVQRVYAIGKPPENQLCAFARLKNVVVFASRGTLPLAN-CLGG 619
Query: 590 DLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIA 649
D F+ +Q P +Y + LD V ++D+ ++ YI +D +G++A
Sbjct: 620 DGHVTRLFIT--------EQVDPTEYDAREPYTLDRPVTLDDICDFVVEYIHSDVVGLVA 671
Query: 650 NAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIP--PHLYVKEYPDFMEKPD 707
+ H + AD CL+LA+ S AVD+ K G+P +I P + PD+ E D
Sbjct: 672 DTHIIIADASSDGTLDRRCLELAKMHSQAVDYLKNGIPVDIRRMPRRLIPFKPDWHEAED 731
Query: 708 KPT-----YESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDA 762
+ + Y S +G ++R TK R +EVD + D I
Sbjct: 732 ESSHPCDYYRSNRALGHMYR---------------TKLDEDRETLAHVEVDSYGDSISQV 776
Query: 763 IYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARA 822
+ + N Y + + +++++ ++ KR + E R
Sbjct: 777 VQQRVN----------GYPLAQASHQEQRNVLRIVETIFKR------------YQDELRY 814
Query: 823 WFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKD 882
S +D DD + V C +G +D C + E ++D
Sbjct: 815 ICMTHSLTDAADDCLREEE----VIASTILAKCSQKGWRKDRLHRMRECATHLVQETRRD 870
Query: 883 KTSIGNAFPALEQQFRQGL 901
IG+ A ++ R GL
Sbjct: 871 --LIGDLEVAPSEEVRNGL 887
>gi|46133873|ref|XP_389252.1| hypothetical protein FG09076.1 [Gibberella zeae PH-1]
Length = 1721
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 160/513 (31%), Positives = 247/513 (48%), Gaps = 55/513 (10%)
Query: 194 DLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL 253
DL PR TR + + LR GI I + F S+SQL+ S ++ A+
Sbjct: 106 DLQPR-------TRQEVSDYSIRCLRAGISINGVHYNFYGHSNSQLKSRSCFLLAATKEG 158
Query: 254 TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 313
+ +I E +G+F +++ V K A R+G FSS+K ++++ D E IPDV+ Y+F
Sbjct: 159 ISRQI-ESLGDFTKMKTVGKKAKRIGLLFSSAKTAMTINPDRCEDIPDVET----ADYIF 213
Query: 314 SDGIGKVSAEFARKVASKCGL--KDN--PPSAFQIRYGGYKGVVAADPTSSKK---LSLR 366
+DG G ++ A++++ + + +D PS FQIRY GYKGVV D K+ L R
Sbjct: 214 TDGCGLIAPSLAQELSRRTRIIFRDTRYTPSVFQIRYRGYKGVVTVDTRMKKQKALLKFR 273
Query: 367 DSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT 426
SM+K+ D +++ + FLN + I LL LGI E KQR R D +
Sbjct: 274 KSMKKFSGG----DDHSFAPFSYGFLNDETIILLHALGISQETLLAKQR---RHFDLLRN 326
Query: 427 DPLKAQEALELMSPGENTNILKELLICG---YKPDAEPFLSMMLQTFRASKLLELR--TK 481
++A L+S ++ + +L+ G KP ++ L+ K+L + +
Sbjct: 327 AKTDHRDAFRLLSYSNRPDLAERVLLDGSDSIKPQINSIVNAELK-----KMLNKKDGQR 381
Query: 482 TRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLV 541
RIF+ R + G D L G+V V+++ E+ + + ++ + V
Sbjct: 382 CRIFVQKSRLLFGVCDAWDVLREGEVAVKVT-------MEETGVPHALKNTE-------V 427
Query: 542 VVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWD 601
V +NPCLHPGD + K V P L H+ DC+VF +G RP + SG DLDGD +FVCWD
Sbjct: 428 TVIRNPCLHPGDWQKFKVVERPELAHLTDCIVFSTRGKRPAADMMSGGDLDGDTFFVCWD 487
Query: 602 DELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPR 661
+LIP P Y + + +D YF Y N SLG + N + +A
Sbjct: 488 PDLIPSTISTPALYPGGRDPITFRPITDDDRLVYFAKY-NNASLGKVKNLYLDWA--RAT 544
Query: 662 KARSEPCLQLAEKFSIAVDFPKTGVPAEI--PP 692
S C +L FS VD + +P ++ PP
Sbjct: 545 GPMSAQCQELNRLFSQCVDGNRIRIPEKLQSPP 577
>gi|392595557|gb|EIW84880.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 1235
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 201/671 (29%), Positives = 307/671 (45%), Gaps = 105/671 (15%)
Query: 125 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 184
SRS IS G + + V +TP+R+ GP I SNRV+R + D+FLR+ F D
Sbjct: 389 SRSIDEVRRISSASGRFFCYHVTITPTRMLLEGPYITQSNRVIRKYEGFEDHFLRVEFRD 448
Query: 185 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 244
ED L R D ++ + R+ L+NGI I R F FLA+SSS LR S
Sbjct: 449 ED-------RLQFRWDREVD-GQSFLEDRVGGMLKNGIDIAGRHFTFLAYSSSALRSHSV 500
Query: 245 WMFASRYGLTAAEIREWMGNFRE-IRNVAKYAARLG-----------------QSFSSSK 286
W ++A IR+ +G F E I +KYAAR+G Q+FS++
Sbjct: 501 WFVNEEDFMSATNIRDSLGVFAETIYQPSKYAARIGVSNGFLRFDLHMFNLPQQAFSATD 560
Query: 287 ETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC-------GLKDNPP 339
++ + D+ + I D+K G+ +F+DG+G +S E R V K G P
Sbjct: 561 PSVKISKDQWKEIRDIKNAQGQ---LFTDGVGTISRELGRMVWEKLCEARRDRGANSVIP 617
Query: 340 SAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKY--ESELTKLDVL-AWSKYQPCFLNRQ 395
SA+QIR+ G+KGVVA D L R SMRK+ ++E +++++ A+ K LNR
Sbjct: 618 SAYQIRFLGFKGVVAIDEQLEGIMLCPRTSMRKFADQTEHAEIEIVRAFDKPNQPNLNRP 677
Query: 396 LISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTN---------- 445
L+ +L G+ F + LD + A +++E +N
Sbjct: 678 LVMVLEDSGVDKGAF-------MELLDDAVAGARMAHDSVEKFVNVLRSNRLGFSYRLAH 730
Query: 446 ILKELLICGY----KPDAEPFLSMMLQTFRAS----KLLELRTKTRIFIPNGRSMMGCLD 497
IL +L G + E + L R L +++ RI IP ++G D
Sbjct: 731 ILLKLDALGLDLKSNSNQESLDTAFLARVRGCVINHVLRDIKHFARIPIPQSYQLVGVAD 790
Query: 498 E-----------TRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 546
E TL G++F I Q GE + ++G V++++
Sbjct: 791 EGPAYVKDGHENVYTLPPGKIFACI------QNFGEEPKW----------LEGPCVISRS 834
Query: 547 PCLHPGDVRVLKAVNVPA------LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCW 600
P +HPGDV+ + AV P H+ + VV P +G RP N G DLDGD+Y +
Sbjct: 835 PVVHPGDVQRVYAVGKPPANQLCLFEHLRNVVVLPSQGPRPLANCLGGGDLDGDLYEIIM 894
Query: 601 DDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREP 660
L+ + P Y + LD I+DV ++ YI +D +G+I++ H + AD+
Sbjct: 895 FQRLLITEHSDPAQYEDRKPRTLDRPSTIDDVCDFVVEYIHSDVVGLISDKHIIIADQSK 954
Query: 661 RKARSEPCLQLAEKFSIAVDFPKTGVPAEIP--PHLYVKEYPDF-MEKPDKPT----YES 713
R + CL+LA+ S AVD+PK G P +I P + PD+ + P YES
Sbjct: 955 DGTRDDLCLKLADLHSQAVDYPKNGNPVDIRRLPRNLIPYKPDWHAAEVSSPRSLDYYES 1014
Query: 714 QNVIGKLFRAV 724
+G ++R+V
Sbjct: 1015 DRALGHMYRSV 1025
>gi|452978294|gb|EME78058.1| hypothetical protein MYCFIDRAFT_145022 [Pseudocercospora fijiensis
CIRAD86]
Length = 1703
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 159/493 (32%), Positives = 245/493 (49%), Gaps = 44/493 (8%)
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAAR 277
L+ G+++ + F S+SQL+ S ++FA+ + ++ E + +F +++V K A R
Sbjct: 113 LKTGVVLNGLAYHFFGHSNSQLKSRSCFLFAASKEVIKEKV-EALADFSNMQSVGKKAKR 171
Query: 278 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL--- 334
LG FSS++ L + + I DVK+ YVF+DG G ++ A++VA + +
Sbjct: 172 LGLLFSSAEHALELQPERCTDIDDVKL----GDYVFTDGCGLIAVRLAKQVAQRKRIVYR 227
Query: 335 -KDNPPSAFQIRYGGYKGVVAADPT--SSKKLSLRDSMRKYES-ELTKLDVLAWSK-YQP 389
K PS QIRY GYKGV+ DPT ++ R SM+K + + V+ SK Y
Sbjct: 228 NKRYLPSVLQIRYRGYKGVLMIDPTLTGQTQVLFRKSMKKLKDVKDLSFSVVEHSKPYTF 287
Query: 390 CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKE 449
FLN +++ LL+ LG+ + KQ E ++ LD +A A +S ++ ++
Sbjct: 288 GFLNDEIVVLLNALGVSTDTILSKQTEYLQFLDEAYNGEPRA--AFRFLSYQNELDLAEK 345
Query: 450 LLICGYKPDAEPFLSMMLQTFRASKLLEL--RTKTRIFIPNGRSMMGCLDET------RT 501
LLI G + S++ + S++L + RI + R + G D T
Sbjct: 346 LLIEGVHSVRKSLRSLVKTEY--SRMLNKYEEQRCRIMLTQSRLLFGVCDPTGRDGGMSR 403
Query: 502 LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 561
L G FV+I+ G GE R ++ V+V +NPCLHPGD++ +AV+
Sbjct: 404 LPPGTCFVRITLDG----DGEP----------RTLINTEVLVTRNPCLHPGDLQKFRAVD 449
Query: 562 VPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSM 621
VP H+VDC+VFP +G RP + SG DLDGD +FV WD ++IP + Y +
Sbjct: 450 VPEFSHLVDCIVFPIRGSRPSADLMSGGDLDGDKFFVTWDPDIIPKKIAEAAMYPGVKER 509
Query: 622 QLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDF 681
++ +D EYF Y + SLG I N + +A + A S C QL FS VD
Sbjct: 510 HHFGEITGDDRAEYFARY-RSTSLGKIKNLYLKWA--RLKGAMSPECQQLNRLFSQCVDG 566
Query: 682 PKTGVPA--EIPP 692
VPA E PP
Sbjct: 567 NHVKVPAAFEDPP 579
>gi|358384596|gb|EHK22193.1| hypothetical protein TRIVIDRAFT_149633 [Trichoderma virens Gv29-8]
Length = 1731
Score = 209 bits (532), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 158/482 (32%), Positives = 236/482 (48%), Gaps = 60/482 (12%)
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAAR 277
LR GI I + F S+SQL+ + ++ A+ A ++ E +G+F +++ VAK A R
Sbjct: 124 LRAGITIQGVHYNFYGHSNSQLKSRTCYLCAASKEQIAQKV-EALGDFTKMKTVAKKAKR 182
Query: 278 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 337
+G FS ++ + V ++E IPD IE+G ++F+DG G ++ A +++ + +
Sbjct: 183 IGLLFSVARAAMQVDPKKVEDIPD--IEVGD--FIFTDGCGLIAPGLASQLSRRIKIAFR 238
Query: 338 ----PPSAFQIRYGGYKGVVAADPTSSKK---LSLRDSMRKYESELTKLDVLAWSKYQPC 390
PS FQIRY GYKGVV DPT +K L +R SM+K+ D L++S Y
Sbjct: 239 NMRYTPSVFQIRYRGYKGVVTLDPTMAKGGPWLKMRKSMKKFSGG----DDLSFSPYVFG 294
Query: 391 FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKEL 450
LN ++I LL LGI + +KQ+E L DP A L ++ E + E
Sbjct: 295 NLNDEVIVLLDALGISRQTLLRKQQEHFDFLAKAYKDPRVAFRILCHLNMPE----VAER 350
Query: 451 LICGYKPDAEPFLSMMLQTFRASKLLELR--TKTRIFIPNGRSMMGCLDETRTLNYGQVF 508
+I P ++ ++ K+L R K RI IP R + G D L GQ
Sbjct: 351 VIIDSLDAVRPKINKLINA-EYDKMLNKRDEQKCRILIPKSRLLFGVCDAWGVLKPGQCA 409
Query: 509 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHH 567
V+++ G Q + ++G+ V+V +NPCLHPGD++ L V P L H
Sbjct: 410 VKVTMDG---------------DGQPYALKGMKVLVTRNPCLHPGDLQKLDVVERPELAH 454
Query: 568 MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIP---------PQQDPPMDYTPA 618
+VDC+VFP G RP + SG DLDGD +FV WD ++IP P P+ ++P
Sbjct: 455 LVDCIVFPTTGRRPTADMMSGGDLDGDTFFVTWDPDIIPSTISQAAHYPGVREPLRFSP- 513
Query: 619 QSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIA 678
+ +D YF Y N SLG + N + +A A S C +L FS
Sbjct: 514 --------ITDDDRLLYFAKY-TNASLGRVKNLYLKWA--RASNAMSSECQELNRLFSQC 562
Query: 679 VD 680
VD
Sbjct: 563 VD 564
>gi|443895352|dbj|GAC72698.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
Length = 1496
Score = 209 bits (531), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 207/720 (28%), Positives = 331/720 (45%), Gaps = 85/720 (11%)
Query: 50 IALPYEILFKINLLVQNGCVA-GPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECC 108
+AL E L + LL + V P LD +++ R V + KL+ E C
Sbjct: 305 LALLRESLLRNELLNMSALVKLSPKLD----HMINQERG-VDEEAVLRVSQKLW--DEAC 357
Query: 109 YEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLR 168
E + + R +++ SP DD L + VTP+RV GP +VSNRV+R
Sbjct: 358 AEAT---GNDSRGFLSVLDPTPSPD---DDYLSKTFSIDVTPTRVLLSGPHTHVSNRVIR 411
Query: 169 HFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI-------TRTRIYTRILSTLRNG 221
+ +F R++F +ED RG + T + I +R+L L+ G
Sbjct: 412 AYSDHWHHFARVTFSNED-----------RGGATTIKANYGFVESERYIQSRVLKILQRG 460
Query: 222 ILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTAAEIREWMGNFREI-RNVAKYA 275
I + R +E LA+SSS + + W F + G + A IR +G+F ++ R A Y
Sbjct: 461 INVAGRHWEMLAWSSSSMSAHTVWFVTPFRDKDGTHVHAEVIRRELGDFTDVARYPAMYG 520
Query: 276 ARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAE-----FARKVAS 330
ARL Q+FS++ T+ V I +PD IE K ++DG+G++S E + + V S
Sbjct: 521 ARLSQAFSATARTVEVDSSLILHMPD--IETPDRKMAYTDGVGQISPELMAEVWEKYVTS 578
Query: 331 KCG-------LKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELTKLDVL 382
G K PSA QIR GG+KG + +P K+L+LR SM K+ S L+V
Sbjct: 579 ALGEPRKRKFFKAAAPSAIQIRIGGHKGCLTVNPRLQGKQLALRPSMSKFVSPHQDLEVA 638
Query: 383 AWS-KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPG 441
S + LNR LI+ L G+ Q+EA+ + T + + S G
Sbjct: 639 NSSARCLSAKLNRPLINALDDRGVPATALLDIQKEAIAHIGRARTHFDETAKLCSAYSFG 698
Query: 442 ENTNI------LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGC 495
++ L + + ++ F ++ + A+ L +++ K RI + G +++G
Sbjct: 699 TGCDLHILFQKLHKHGMGATSIHSDSFFLVLAKAVIAAALGDMKRKARIPV-RGVTLIGV 757
Query: 496 LDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR 555
DE L G+VF Q+ Q+ R+R +V G ++ ++P + PGD+
Sbjct: 758 ADEFAFLKEGEVFAQVEHVDLGQV------------RRRVLV-GTKLIGRSPTVDPGDIA 804
Query: 556 VLKAVNVPALHHMV---DCVVFPQ-KGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP 611
++K V P H ++ + VVF P P G DLDGD+Y + D+ L P P
Sbjct: 805 MVKCVRPPPGHPLLQLRNVVVFNTCTRQEPLPRRLGGGDLDGDLYTIYEDERLFLPTPQP 864
Query: 612 PMDY-TPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQ 670
+ + M+LD D+ +F ++++ND +G++++ H AD + C Q
Sbjct: 865 GTTFHAKTRPMELDRYCNSTDLANFFADFMLNDFIGLVSHMHLRIADASKAGSLDGRCKQ 924
Query: 671 LAEKFSIAVDFPKTGVPAEIP--PHLYVKEYPDFMEKPDKP----TYESQNVIGKLFRAV 724
LA S+A DF KTGV + P + PDF+ + + TY S V+G L+RAV
Sbjct: 925 LAMLHSLATDFRKTGVAVKRTQLPRMDEPIIPDFLAQGEPRQGGLTYPSTRVLGYLYRAV 984
>gi|403374620|gb|EJY87268.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1352
Score = 208 bits (530), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 187/715 (26%), Positives = 310/715 (43%), Gaps = 143/715 (20%)
Query: 112 SRWLTDQYRKYMTSRSKPSSPAI---SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLR 168
SR L + YR Y+ S + I + +D + R+ TP+ F + +NRV+R
Sbjct: 418 SRTLLEAYR-YLEKNSGEITLEIQNETENDNDLRQRRIYQTPTLTLFFANQREQTNRVIR 476
Query: 169 HFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 228
F++ DNF R+ +++ L K H + + + + ++ + IGD
Sbjct: 477 QFKKYKDNFFRLVLVNDQLQKFHFGSMKQK----------EMLQHMKDLMKQELYIGDSL 526
Query: 229 FEFLAFSSSQLRESSAWMFASRY--GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSK 286
+ L +S+SQL+ S WM S + I +G F K AR GQ FS++K
Sbjct: 527 AQVLNYSNSQLKNHSVWMVCSTSIPEIQPNAIISRLGTFTNEGGNLKMFARRGQCFSTTK 586
Query: 287 ETLSVHMD-EIEIIPDVKI-------------EIGKTKYVFSDGIGKVSAEFARKVASKC 332
+ D +E+I D++ + + YVF+DG C
Sbjct: 587 YVTKLDPDSNVEVIEDIERPKKNDPDLAQAEPDQREGNYVFTDG---------------C 631
Query: 333 GLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCF 391
G G KGV+ P +K+ LR S K+ E L+V+ S + +
Sbjct: 632 G--------------GVKGVLMLKPDLDGRKVQLRKSQIKFACENWGLEVIRCSTFSQGY 677
Query: 392 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDA-ILTDPLKAQEALELMSPGEN------- 443
LNRQ+I LLS LG+ D +F A+ L+ + L ++ + + S +N
Sbjct: 678 LNRQVILLLSCLGVDDNVFLSHLHTALENLNVEKVIKNLYSRSTVFMTSKSKNRKDENEN 737
Query: 444 ---TNILKELLICGYKPD---AEPFLSMMLQTFRASKLL------ELRTK---------- 481
N +K L + P + F + QT + + + E+RTK
Sbjct: 738 KSKANEMKNELDVFFGPSKIFSPIFKHCLAQTLKQIEQVKKGLPEEMRTKDLHLSPKQVF 797
Query: 482 --------------------------TRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG 515
RI I N +++G +DET TL+ G+++++I+
Sbjct: 798 FLENEPIFDSILSNMVLGLAVNLKKKARIRIKNSCTLIGVIDETGTLDEGEIYLKINRGS 857
Query: 516 Y----------------RQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 559
Y G+ S + + I++G V+V KNPC HPGD+R L+A
Sbjct: 858 YDYDQIQEKLVDEYDEIENADGKKSRLAEINTWLDQIIEGDVIVTKNPCSHPGDIRKLRA 917
Query: 560 VNV-PALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ--DPPMDYT 616
V H+ + +VF KG RP ++ SG DLDGD+Y WD+ L+ Q + P Y
Sbjct: 918 VGEHSTFEHLTNVIVFSSKGCRPEQHKMSGGDLDGDVYLCMWDESLVNALQKIEKPAVYK 977
Query: 617 PAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA-RSEPCLQLAEKF 675
+ + D Q + + +Y Y D+LG +A+ H +D+ + ++ C++L+
Sbjct: 978 KFEE-SIKTDSQKDTIVDYMAEYFEKDNLGHLAHLHLGLSDQLGVEGPYNKECVELSWYI 1036
Query: 676 SIAVDFPKTGVPAEIPPHLYVKE----YPDFMEKPD--KPTYESQNVIGKLFRAV 724
SIAVDF K G + + +++ +PD+MEK D + T ES ++G+L+RAV
Sbjct: 1037 SIAVDFAKHGKHVDKDKYEMIEKKLDRWPDYMEKNDIGRKTVESPLILGQLYRAV 1091
>gi|403337310|gb|EJY67868.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1352
Score = 208 bits (530), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 187/715 (26%), Positives = 310/715 (43%), Gaps = 143/715 (20%)
Query: 112 SRWLTDQYRKYMTSRSKPSSPAI---SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLR 168
SR L + YR Y+ S + I + +D + R+ TP+ F + +NRV+R
Sbjct: 418 SRTLLEAYR-YLEKNSGEITLEIQNETENDNDLRQRRIYQTPTLTLFFANQREQTNRVIR 476
Query: 169 HFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 228
F++ DNF R+ +++ L K H + + + + ++ + IGD
Sbjct: 477 QFKKYKDNFFRLVLVNDQLQKFHFGSMKQK----------EMLQHMKDLMKQELYIGDSL 526
Query: 229 FEFLAFSSSQLRESSAWMFASRY--GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSK 286
+ L +S+SQL+ S WM S + I +G F K AR GQ FS++K
Sbjct: 527 AQVLNYSNSQLKNHSVWMVCSTSIPEIQPNAIISRLGTFTNEGGNLKMFARRGQCFSTTK 586
Query: 287 ETLSVHMD-EIEIIPDVKI-------------EIGKTKYVFSDGIGKVSAEFARKVASKC 332
+ D +E+I D++ + + YVF+DG C
Sbjct: 587 YVTKLDPDSNVEVIEDIERPKKNDPDLAQAEPDQREGNYVFTDG---------------C 631
Query: 333 GLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCF 391
G G KGV+ P +K+ LR S K+ E L+V+ S + +
Sbjct: 632 G--------------GVKGVLMLKPDLDGRKVQLRKSQIKFACENWGLEVIRCSTFSQGY 677
Query: 392 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDA-ILTDPLKAQEALELMSPGEN------- 443
LNRQ+I LLS LG+ D +F A+ L+ + L ++ + + S +N
Sbjct: 678 LNRQVILLLSCLGVDDNVFLSHLHTALENLNVEKVIKNLYSRSTVFMTSKSKNRKDENEN 737
Query: 444 ---TNILKELLICGYKPD---AEPFLSMMLQTFRASKLL------ELRTK---------- 481
N +K L + P + F + QT + + + E+RTK
Sbjct: 738 KSKANEMKNELDVFFGPSKIFSPIFKHCLAQTLKQIEQVKKGLPEEMRTKDLHLSPKQVF 797
Query: 482 --------------------------TRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG 515
RI I N +++G +DET TL+ G+++++I+
Sbjct: 798 FLENEPIFDSILSNMVLGLAVNLKKKARIRIKNSCTLIGVIDETGTLDEGEIYLKINRGS 857
Query: 516 Y----------------RQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 559
Y G+ S + + I++G V+V KNPC HPGD+R L+A
Sbjct: 858 YDYDQIQEKLVDEYDEIENADGKKSRLAEINTWLDQIIEGDVIVTKNPCSHPGDIRKLRA 917
Query: 560 VNV-PALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ--DPPMDYT 616
V H+ + +VF KG RP ++ SG DLDGD+Y WD+ L+ Q + P Y
Sbjct: 918 VGEHSTFEHLTNVIVFSSKGCRPEQHKMSGGDLDGDVYLCMWDESLVNALQKIEKPAVYK 977
Query: 617 PAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA-RSEPCLQLAEKF 675
+ + D Q + + +Y Y D+LG +A+ H +D+ + ++ C++L+
Sbjct: 978 KFEE-SIKTDSQKDTIVDYMAEYFEKDNLGHLAHLHLGLSDQLGVEGPYNKECVELSWYI 1036
Query: 676 SIAVDFPKTGVPAEIPPHLYVKE----YPDFMEKPD--KPTYESQNVIGKLFRAV 724
SIAVDF K G + + +++ +PD+MEK D + T ES ++G+L+RAV
Sbjct: 1037 SIAVDFAKHGKHVDKDKYEMIEKKLDRWPDYMEKNDIGRKTVESPLILGQLYRAV 1091
>gi|154273921|ref|XP_001537812.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415420|gb|EDN10773.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 652
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 142/470 (30%), Positives = 226/470 (48%), Gaps = 79/470 (16%)
Query: 429 LKAQEALELMS----PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 484
++ ++A+ L+ P + T IL +++ G++ EPF+S +L+ +R ++ L+ K +I
Sbjct: 2 IQEEQAVHLLQTHVDPNQMTLILADMVRDGFQGSKEPFVSSILELWRTWQIKYLKEKAKI 61
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGES---------SLFSSSRSRQRF 535
I G ++GC+DET+TL + + + S G + ES ++ S +
Sbjct: 62 AIDEGAFLLGCIDETKTL---KGYFRSSRPGQDATYEESVACLPEIFVQVWRHSEGK-YV 117
Query: 536 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDI 595
I++G+ ++A+NP LHPGD+RV+KAVN P+LHH+ D VV PQ G R + CSG DLDGD
Sbjct: 118 IIEGVCILARNPSLHPGDIRVVKAVNAPSLHHLRDVVVLPQTGDRDISSMCSGGDLDGDD 177
Query: 596 YFVCWDDELIPPQQ-DPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTV 654
Y V WD +++P PMDY + LD DV ++D+ +++ NY+ ND L IA AH
Sbjct: 178 YVVIWDQDILPTDWFHNPMDYAAPKPEVLDRDVTVDDITKFYVNYMQNDRLPQIALAHLA 237
Query: 655 FADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQ 714
AD ++E CLQLA S AVD+ K+G+P ++ L + +P FME+ + Y
Sbjct: 238 LADYMEEGVKNEKCLQLAALHSAAVDYNKSGIPVKLTRDLKPRRWPHFMERKMRNKYA-- 295
Query: 715 NVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLG 774
D A K YD +
Sbjct: 296 ---------------------------------------------DFATNLKTQYDADMR 310
Query: 775 NLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTED 834
+M + IKTE E+ + ++ S+ + E IG +LR++ R EK G +
Sbjct: 311 RIMAQHEIKTELEVWSTFVLSHSEMTKDYKFHEDIGRISSSLREKFRIMCYEKVGGKEFE 370
Query: 835 DAYAKASAWYHVTYHPDYW-----GCYNQGMNRDHF-------LSFPWCV 872
A A Y VT + W ++ ++ HF +SFPW +
Sbjct: 371 HLAPLAVAMYKVT--SEQWEIAVAAHHDVFVDNSHFQERKLPLISFPWIL 418
>gi|171681273|ref|XP_001905580.1| hypothetical protein [Podospora anserina S mat+]
gi|170940595|emb|CAP65823.1| unnamed protein product [Podospora anserina S mat+]
Length = 1721
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 155/497 (31%), Positives = 238/497 (47%), Gaps = 51/497 (10%)
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAAR 277
LR GI I + F S+SQL+ + + +A + ++ + +G+F +++ VAK A R
Sbjct: 126 LRTGISIQGVHYNFYGHSNSQLKSRTCFFYAGSPEEISRKVND-LGDFSKMKTVAKKAKR 184
Query: 278 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL--- 334
+ FS+ + + + +E IPD++ Y+F+DG G +S AR++A + +
Sbjct: 185 ISLLFSTGSVAMLIPPERVEDIPDIET----ADYIFTDGCGLISPNLARELARRDRIIFR 240
Query: 335 -KDNPPSAFQIRYGGYKGVVAADPTSSKK-----------LSLRDSMRKYES-ELTKLDV 381
+ PS FQIRY GYKGVV D T + L LR SM+K+ + V
Sbjct: 241 NRRYTPSVFQIRYRGYKGVVEVDQTMPRPKNKSSDAPPIWLKLRKSMKKFSGGDDYSFSV 300
Query: 382 LAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSP 440
+ +SK Y +LN + I LLS LGI + F +KQ E + L+ DP + A +S
Sbjct: 301 VEYSKPYTYGYLNDESILLLSALGITHKTFHQKQNEHFQFLEEATRDP---RAAFRFLSY 357
Query: 441 GENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR--TKTRIFIPNGRSMMGCLDE 498
+ +++L+ A+ + +++ K+L R K RI IP R + G D
Sbjct: 358 ANMPEMAEKILMADNVEHAQSKVKALVKA-EYGKMLNKRDDQKCRILIPQSRLLFGVCDA 416
Query: 499 TRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVL 557
L G+ V+++ LF Q ++G+ V+V +NPCLHPGD++
Sbjct: 417 WDCLKEGECAVKVT------------LFEDG---QPAALKGMEVLVTRNPCLHPGDMQKF 461
Query: 558 KAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTP 617
+ V P L H+ DC+VF +G RP + SG DLDGD +FVCWD +IP P Y
Sbjct: 462 RVVERPELAHLTDCIVFSSRGRRPAADLMSGGDLDGDTFFVCWDKSVIPSTMSEPAKYPG 521
Query: 618 AQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSI 677
A+ + +D YF Y N SLG + + +A R + C +L FS
Sbjct: 522 AREAISFKAITDDDRLVYFAKY-NNMSLGRVKKLYLAWA--RARGPMAPECQELNRLFSQ 578
Query: 678 AVDFPKTGVPAEIPPHL 694
VD G IPP L
Sbjct: 579 CVD----GTIIRIPPKL 591
>gi|336388940|gb|EGO30084.1| RNA-directed RNA polymerase [Serpula lacrymans var. lacrymans S7.9]
Length = 1246
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 155/496 (31%), Positives = 246/496 (49%), Gaps = 42/496 (8%)
Query: 214 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW-MGNFREIRNVA 272
I+ ++ G+ + ++ F S+SQLR + + F + R + +G+F I N+A
Sbjct: 68 IVRLMKAGLFLNGLQYRFYHHSNSQLRSRTCF-FREANSDEELDARIYKLGDFGRIMNIA 126
Query: 273 KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC 332
K A R+G FS+++ L + + I D+ + VFSDG G ++ FA +V+
Sbjct: 127 KRAKRIGLLFSAAEVDLQLDPKWVTDIDDITV----GDIVFSDGCGLMAKRFAVQVSKAK 182
Query: 333 GL----KDNPPSAFQIRYGGYKGVVAADPTSSKK----LSLRDSMRKYES-ELTKLDVLA 383
+ + P+ FQIRY GYKGV+ DP ++ + R SM+K+ + E V+
Sbjct: 183 SIIFRNQRYTPTVFQIRYLGYKGVLMLDPKLDEEKKFLVKFRKSMKKFSTTEDKSFSVVG 242
Query: 384 WSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGE 442
+S+ Y LN ++ LLS+LGI DE F+ KQR ++ D +KA ++ +S
Sbjct: 243 YSQPYSFGRLNNDIVVLLSSLGISDEKFQAKQRAYFEWIEGASHDAVKA---IDFLSSLG 299
Query: 443 NTNILKELLICGYKPDAEPFLSMMLQTFRASKLLEL-RTKTRIFIPNGRSMMGCLDETRT 501
++ + LL+ G A LQ ++ L+ R +TR+ I R + G D
Sbjct: 300 KYSLAERLLLDGMDSPAVSKEIRALQNAEVAQFLKNNRPRTRMIIHKSRLLYGVCDPYGV 359
Query: 502 LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 561
L GQV ++I+ SSR + G ++V +NPCLHPGD L+AV+
Sbjct: 360 LKEGQVQIRIT---------------SSRGGATTPINGDILVVRNPCLHPGDCLKLRAVD 404
Query: 562 VPALHHMVDCVVFP---QKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPA 618
P+L H++DC+VF + G +P P SG DLDGD +FVCWD +L+P P DY P
Sbjct: 405 HPSLSHLLDCIVFATVGRPGHQPAPAMSSGGDLDGDKFFVCWDPDLVPSLVHEPYDYPPN 464
Query: 619 QSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIA 678
+ ++ DV D+ YF +Y N SL ++ H + P A C +L S +
Sbjct: 465 KE-RVGKDVTRMDLATYFASY-NNMSLAKVSALHQKWVRSSPDGALCVQCQELNALHSQS 522
Query: 679 VDFPKTGVPAEI--PP 692
VD + +P + PP
Sbjct: 523 VDGGRIKIPDRLLTPP 538
>gi|66813222|ref|XP_640790.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
gi|60468778|gb|EAL66778.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
Length = 2285
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 195/739 (26%), Positives = 324/739 (43%), Gaps = 122/739 (16%)
Query: 134 ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHST 193
I ++G V ++ + VTPSR+ P + + NR+LR F + F+ +F DE+L+
Sbjct: 1065 IQSNNGWVLINEIFVTPSRIVLKPPRLTLGNRILRKFSPE--KFILFNFTDENLEPFRGL 1122
Query: 194 DLSPRGSSATDITRTRIYTRILSTLRNGILI---GDRKFEFLAFSSSQLRESSAWMFASR 250
+ SS T RI+ NGI I +K+ F+ S SQ+R SAW
Sbjct: 1123 N----KSSPLTKTIERIFN-------NGIEIIQGSGKKYFFIGCSQSQVRNYSAWFVLED 1171
Query: 251 YGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK 310
W G E + K L FS++ ++ ++ +IE+IPD+ I K
Sbjct: 1172 KVTNEKSALNWSGIKYESLQMIKVFRNLCLLFSTTLKSQVIY--KIEMIPDI---ISKEG 1226
Query: 311 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV-VAADPTSSKKLSLRDSM 369
+ F++G G + ++ + + ++ A+QIR GG KGV V + L +R SM
Sbjct: 1227 HNFTEGCGFIGSKLVELINQQNNY-NSSTCAYQIRLGGSKGVLVLNENIDEMSLQIRPSM 1285
Query: 370 RKYE---------SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQ 420
K+E E L++++ S C LNRQ I+LLS G+ D F + + Q
Sbjct: 1286 SKFELDYKSGQLDEEHKTLEIVSASTTSRCKLNRQAITLLSNAGVEDSTFLQMLEVELNQ 1345
Query: 421 LDAILTDPLKAQEALELMSPGENTNILKELL------ICGYKPDAEPFLSMMLQTFRASK 474
L D N+ KELL I Y+ + ++ +L SK
Sbjct: 1346 NAQTLVD----------------VNLSKELLGDFFQHITEYELFNDYYIRSILLKLYKSK 1389
Query: 475 LLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQR 534
L++++ K I + R+++G D + TL V++++ +L +L
Sbjct: 1390 LIKIQDKCWIEVKESRNLLGVCDTSGTLPEDTVYIEV-----EELDPIDNLMKPK----- 1439
Query: 535 FIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGD 594
++ G V V KNPC HPGDVR LKA++ P L+ + + F GM P+ +CSGSDLDGD
Sbjct: 1440 -VIIGRVAVLKNPCHHPGDVRFLKAIDHPPLNGKRNVLFFSTNGMVPNFKQCSGSDLDGD 1498
Query: 595 IYFVCWDDELI-------PPQQDPPMDYTPAQSMQLDHDVQIED---------------- 631
YFV +D LI P P + D Q E+
Sbjct: 1499 RYFVIYDQTLIREDLITHEPYLGEEQTVNPLIGEEDSDDDQYENDDNDITIPTSTTTKST 1558
Query: 632 ------VEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTG 685
+ + + + LG I+N H +D E K S +++A + +I VD KT
Sbjct: 1559 NNTPTKLSDIYLKNVDKSKLGTISNTHLAISDIE--KVSSINSIKVAIQCAIEVDSVKTS 1616
Query: 686 V----PAEIPPHLYVKEYPDFMEKPDKPTYE-----------SQNVIGKLFRAVKDIAPH 730
V P ++ L K YP FM+ + T+E S VIGK++ + +++
Sbjct: 1617 VHGIIPRDVKSILKEKGYPHFMKIKNGSTFEYKGGNQRKYYISDRVIGKIYDSAENLL-- 1674
Query: 731 TSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHK-GNYDYKLGNLMDYYGIKTEAEIL 789
F + D + V G++++++ + +Y K+ +++ +G ++E ++L
Sbjct: 1675 -----WFGDFLPEAKVDESLLVQGYKEYLNHENFTTYMDYKSKINSILRRFGAQSEEDLL 1729
Query: 790 TGSIMKMSKSFTKRRDAEA 808
G M F+++ EA
Sbjct: 1730 IGF---MDPQFSEKLSIEA 1745
>gi|336364173|gb|EGN92535.1| hypothetical protein SERLA73DRAFT_99065 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1660
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 155/496 (31%), Positives = 246/496 (49%), Gaps = 42/496 (8%)
Query: 214 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW-MGNFREIRNVA 272
I+ ++ G+ + ++ F S+SQLR + + F + R + +G+F I N+A
Sbjct: 93 IVRLMKAGLFLNGLQYRFYHHSNSQLRSRTCF-FREANSDEELDARIYKLGDFGRIMNIA 151
Query: 273 KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC 332
K A R+G FS+++ L + + I D+ + VFSDG G ++ FA +V+
Sbjct: 152 KRAKRIGLLFSAAEVDLQLDPKWVTDIDDITV----GDIVFSDGCGLMAKRFAVQVSKAK 207
Query: 333 GL----KDNPPSAFQIRYGGYKGVVAADPTSSKK----LSLRDSMRKYES-ELTKLDVLA 383
+ + P+ FQIRY GYKGV+ DP ++ + R SM+K+ + E V+
Sbjct: 208 SIIFRNQRYTPTVFQIRYLGYKGVLMLDPKLDEEKKFLVKFRKSMKKFSTTEDKSFSVVG 267
Query: 384 WSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGE 442
+S+ Y LN ++ LLS+LGI DE F+ KQR ++ D +KA ++ +S
Sbjct: 268 YSQPYSFGRLNNDIVVLLSSLGISDEKFQAKQRAYFEWIEGASHDAVKA---IDFLSSLG 324
Query: 443 NTNILKELLICGYKPDAEPFLSMMLQTFRASKLLEL-RTKTRIFIPNGRSMMGCLDETRT 501
++ + LL+ G A LQ ++ L+ R +TR+ I R + G D
Sbjct: 325 KYSLAERLLLDGMDSPAVSKEIRALQNAEVAQFLKNNRPRTRMIIHKSRLLYGVCDPYGV 384
Query: 502 LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 561
L GQV ++I+ SSR + G ++V +NPCLHPGD L+AV+
Sbjct: 385 LKEGQVQIRIT---------------SSRGGATTPINGDILVVRNPCLHPGDCLKLRAVD 429
Query: 562 VPALHHMVDCVVFP---QKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPA 618
P+L H++DC+VF + G +P P SG DLDGD +FVCWD +L+P P DY P
Sbjct: 430 HPSLSHLLDCIVFATVGRPGHQPAPAMSSGGDLDGDKFFVCWDPDLVPSLVHEPYDYPPN 489
Query: 619 QSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIA 678
+ ++ DV D+ YF +Y N SL ++ H + P A C +L S +
Sbjct: 490 KE-RVGKDVTRMDLATYFASY-NNMSLAKVSALHQKWVRSSPDGALCVQCQELNALHSQS 547
Query: 679 VDFPKTGVPAEI--PP 692
VD + +P + PP
Sbjct: 548 VDGGRIKIPDRLLTPP 563
>gi|347841951|emb|CCD56523.1| hypothetical protein [Botryotinia fuckeliana]
Length = 717
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 130/391 (33%), Positives = 208/391 (53%), Gaps = 28/391 (7%)
Query: 29 ETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAP 88
+T A RSLD + + LP+E+ +++ + + V +D F + A
Sbjct: 344 KTTQAGLRSLDPSSV-----KVNLPFEVRYQLEVCISREIVNEYNIDEKFINSL----AE 394
Query: 89 VSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQV 148
+S A + L ++ E + S+ L D + S + S + + + V
Sbjct: 395 LSAQDPAKARNLLEYVAE--HYSSKRLYDPSSIFTNSEALSFSALTDIPHYCAFSRKATV 452
Query: 149 TPSRVYFCGPEINVSNRVLRHFRRDIDN--FLRISFIDEDLD-KIHSTDLSPRGSSATDI 205
TP+ + F P + +NRVLRH+ ++ FLR+ F DE + +I+S A I
Sbjct: 453 TPTSILFNSPTVETTNRVLRHYSKENQEGRFLRVQFTDEKFEGRINSC--------ADKI 504
Query: 206 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNF 265
I+TR+ + NGI IGDR +EFLAF +SQ RE+ A+ F L+ +IR+WMG F
Sbjct: 505 RNDAIFTRVFRVISNGIRIGDRHYEFLAFGNSQFRENGAYFFCPSANLSCNDIRQWMGTF 564
Query: 266 REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFA 325
I VAKYAARLGQ FS+++ + +I IPD IG+ +Y F+DG+GK+S A
Sbjct: 565 SHINVVAKYAARLGQCFSTTRAIKGLSAPDIVKIPD----IGRGRYCFTDGVGKISPYLA 620
Query: 326 RKVASKCGLK-DNPPSAFQIRYGGYKGVVAADPTSS-KKLSLRDSMRKYESELTKLDVLA 383
+ +AS+ L+ D PSAFQ R GG KG++ P + ++ +R S +K+ + L+++
Sbjct: 621 QMIASELKLRVDLAPSAFQFRLGGCKGILVVSPDAKDNEVHIRKSQQKFTAAYNGLEIIR 680
Query: 384 WSKYQPCFLNRQLISLLSTLGIWDEIFEKKQ 414
S++ LNRQ I++LS LG+ DE E+++
Sbjct: 681 CSQFSSATLNRQTITILSALGVKDECNEQQR 711
>gi|340521489|gb|EGR51723.1| Hypothetical protein TRIREDRAFT_55637 [Trichoderma reesei QM6a]
Length = 1734
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 152/473 (32%), Positives = 233/473 (49%), Gaps = 42/473 (8%)
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAAR 277
L+ GI I + F S+SQL+ + ++ A+ + ++ E +G+F +++ VAK A R
Sbjct: 124 LKAGISIHGVHYNFYGHSNSQLKSRTCYLCAASKEDISRKV-EALGDFTKMKTVAKKAKR 182
Query: 278 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL--- 334
+G FS ++ + V ++ IPD IE+G ++F+DG G ++ A++++ + +
Sbjct: 183 IGLLFSVARAAMQVDPKMVQDIPD--IEVGD--FIFTDGCGLIAPHLAKELSRRTRIVFR 238
Query: 335 -KDNPPSAFQIRYGGYKGVVAADPTSSKK---LSLRDSMRKYESELTKLDVLAWSKYQPC 390
PS FQIRY GYKGVV DPT +K L +R SM+K+ D L++S Y
Sbjct: 239 NMRYTPSVFQIRYRGYKGVVTLDPTMAKGVPWLKMRKSMKKFSGG----DDLSFSPYVFG 294
Query: 391 FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKEL 450
LN ++I LL LGI + +KQ+E L +P+ A L ++ E+ E
Sbjct: 295 HLNDEVIVLLDALGISRQTLLRKQQEHFEFLAQAYHNPIVAFRILCHLNMPEDA----EK 350
Query: 451 LICGYKPDAEPFLSMMLQTFRASKLLELR--TKTRIFIPNGRSMMGCLDETRTLNYGQVF 508
+I P ++ +++ K+L R + RI IP R + G D L GQ
Sbjct: 351 VIIDSLDAVRPTINRLVKA-EYDKMLNKRDEQRCRILIPKSRLLFGVCDAWGVLKPGQCA 409
Query: 509 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHH 567
V+++ G Q + ++G V+V +NPCLHPGD++ L V P L H
Sbjct: 410 VKVTMDG---------------DGQPYALKGTKVLVTRNPCLHPGDLQKLDVVERPELAH 454
Query: 568 MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDV 627
+VDC+VFP G RP + SG DLDGD +FV WD ++IP Y + +
Sbjct: 455 LVDCIVFPTTGRRPTADMMSGGDLDGDTFFVTWDPDIIPTTVSQAAHYPGVREPLRFSPI 514
Query: 628 QIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVD 680
ED YF Y N SLG + N + +A A S C +L FS VD
Sbjct: 515 TDEDRLVYFAKY-TNVSLGRVKNLYLKWA--RATGAMSAECQELNRLFSQCVD 564
>gi|358393899|gb|EHK43300.1| hypothetical protein TRIATDRAFT_294361 [Trichoderma atroviride IMI
206040]
Length = 1759
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 158/475 (33%), Positives = 231/475 (48%), Gaps = 40/475 (8%)
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAAR 277
LR GI I + F S+SQL+ + + A+ + +I E +G+F +++ VAK A R
Sbjct: 124 LRTGISIQGVHYNFYGHSNSQLKSRTCYFLAAPKEQISKKI-EGLGDFTKMKTVAKKAKR 182
Query: 278 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL--- 334
+G FS ++ + V ++E IPD IE+G YVF+DG G ++ A++++ + +
Sbjct: 183 IGLLFSVARAAMKVDPKKVEDIPD--IEVGD--YVFTDGCGLIAPALAKELSRRTRIIFR 238
Query: 335 -KDNPPSAFQIRYGGYKGVVAADPTSSKK---LSLRDSMRKYES-ELTKLDVLAWSK-YQ 388
PS FQ+RY GYKGVV DPT +K L +R SM+K+ + V+ +SK Y
Sbjct: 239 NMRYTPSVFQLRYRGYKGVVTLDPTMAKGGTWLKMRKSMKKFSGGDDLSFSVVEYSKPYV 298
Query: 389 PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNIL 447
LN ++I LL LG+ +I +KQ+E L DP A L L P L
Sbjct: 299 FGHLNDEVIVLLDALGVDRKILLRKQQEHFNFLAEAYQDPRAAFRVLCHLDRPD-----L 353
Query: 448 KELLICGYKPDAEPFLSMMLQTFRASKLLELR--TKTRIFIPNGRSMMGCLDETRTLNYG 505
E +I P ++ ++ K+L R K RI IP R + G D L G
Sbjct: 354 AERVIIDSLDSVRPSINRLINA-EYDKMLNKRDEQKCRILIPKSRLLFGVCDAWGVLKPG 412
Query: 506 QVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 565
Q V+++ + G ++ V+V +NPCLHPGD++ L V P L
Sbjct: 413 QCAVKVT----MDVDGLPYALKGTK----------VLVTRNPCLHPGDLQKLDVVERPEL 458
Query: 566 HHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDH 625
H+VDC+VFP G RP + SG DLDGD +FV WD ++IP Y +
Sbjct: 459 AHLVDCIVFPTTGRRPAADMMSGGDLDGDTFFVTWDPDIIPSTISQAAHYPGVREPLRFA 518
Query: 626 DVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVD 680
+ +D YF Y N SLG + N + +A R R E C +L FS VD
Sbjct: 519 PITDDDRLLYFAKY-TNASLGRVKNLYLRWA-RATNAMRPE-CQELNRLFSQCVD 570
>gi|346977552|gb|EGY21004.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1444
Score = 202 bits (515), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 190/335 (56%), Gaps = 16/335 (4%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
V +V VTP+ +Y P + SNRV+R ++ D FLR+ F DE + +S R
Sbjct: 490 VRKVVVTPTTIYLSSPGVEASNRVIRKYQHVSDRFLRVQFTDE----LTRGRISTRAKME 545
Query: 203 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM 262
D ++ R+ T+ NGI IGDR ++FLAF +SQ+RE A+ F L E+R+WM
Sbjct: 546 LD---HYVFKRVYLTMINGIRIGDRHYKFLAFGNSQIRECGAYFFCETAHLKCTEMRQWM 602
Query: 263 GNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSA 322
GNF I VAK+AARLGQ FS+++E S+ I+IIPD++ + + F+DG+GK+S+
Sbjct: 603 GNFNHIHIVAKFAARLGQCFSTTREIRSIRAPNIQIIPDIE----RNGHCFTDGVGKISS 658
Query: 323 EFARKVASKCGLKD-NPPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLD 380
A V + GL+ PSAFQ R GG KGV+A P + + +R S K+++ L+
Sbjct: 659 FLASMVLEEMGLETVETPSAFQFRMGGCKGVLAVWPEAKGMYVHIRKSQEKFKATFNGLE 718
Query: 381 VLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSP 440
++ +++ LNRQ I++L++LGI E+F + + + + D A L
Sbjct: 719 IIRCARFSVATLNRQTITILTSLGIKSEVFMDLLQRQLHGYEKAMNDQGAAAVLLGRHID 778
Query: 441 GENTNI-LKELLICGY-KPDA-EPFLSMMLQTFRA 472
+T++ L++L+ G+ + D EPF+ +LQ +R
Sbjct: 779 ENHTSLALRDLINWGFMRHDVQEPFVLTILQLWRG 813
Score = 132 bits (332), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 99/313 (31%), Positives = 142/313 (45%), Gaps = 44/313 (14%)
Query: 538 QGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYF 597
+G+ +V +NP LHPGDVRV++AV+VP L HM + VVFP G P+ SG DLDGD +F
Sbjct: 812 RGVCIVGRNPSLHPGDVRVVEAVDVPQLRHMKNVVVFPSTGDVDVPSMLSGGDLDGDDFF 871
Query: 598 VCWDDELIPPQQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFA 656
V WD LIPP + PMD Q +D DV +D+
Sbjct: 872 VIWDPNLIPPVWNFRPMDNVAPQPKVVDRDVNAKDL------------------------ 907
Query: 657 DREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFM-EKPDKPT-YESQ 714
LQLA+ S AVD+ K+G PAE+ L + +P FM E+ +K + Y S
Sbjct: 908 -----------SLQLAKLHSKAVDYVKSGDPAELGRELRARRWPHFMGERRNKNSLYHSY 956
Query: 715 NVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLG 774
+G+++ V+D+ + + F + + R D V + A K YD +
Sbjct: 957 TALGQIYDRVQDVPFNPLYEKKFDRRILSRFAPIDNAV------LKQARRLKSTYDTAMR 1010
Query: 775 NLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTED 834
LM + TE EI TG + + + +E IG L++ R G D
Sbjct: 1011 RLMAQREVSTEFEIWTGFPLSRPRVGNAYKHSEDIGRDAGLLKQSFRDEVHALVGGSGYD 1070
Query: 835 DAYAKASAWYHVT 847
+A Y VT
Sbjct: 1071 KVAPFVAAMYQVT 1083
>gi|392564352|gb|EIW57530.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1232
Score = 202 bits (514), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 178/654 (27%), Positives = 302/654 (46%), Gaps = 94/654 (14%)
Query: 139 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPR 198
G + V VTP+R+ GP SNRV+R + +NF+R+ F DE+ P+
Sbjct: 417 GTLKCFHVIVTPTRILLEGPYDTQSNRVVRKYHDYRENFVRVEFRDENRMAFRW----PK 472
Query: 199 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG------ 252
++ + R T L+ G+ I R+F FL +S+S LRE + W F S +
Sbjct: 473 EVNSASLIEERFGT----ILKEGLEIAGRRFRFLGYSNSGLREHTTW-FMSDFEHPDEGL 527
Query: 253 LTAAEIREWMGNFREIRNV-AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY 311
LT IR+ +GNF + + +KYAAR+ Q+FS + ++ + D+ + D ++GK +
Sbjct: 528 LTPDRIRDSLGNFSNVNTIPSKYAARIAQAFSGTDPSVRIRRDQWD---DQLADLGKKPF 584
Query: 312 VFSDGIGKVSAEF----------ARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SS 360
+DG G +S A+ +K LK PSA+QIR+ G+KG+V D T
Sbjct: 585 WHTDGQGTISVGLRDEIWDVLVKAQPDKAKLTLK---PSAYQIRFLGFKGIVVVDETLEG 641
Query: 361 KKLSLRDSMRKYESEL-----TKLDVLAWSKY-QPCFLNRQLISLLSTLGIWDEIFEKKQ 414
+ LR +M K+++ ++++ Y L R LI +L LG+ E + Q
Sbjct: 642 VYMRLRPTMNKFKAHADDEADAEIEIAKAFIYPGTARLCRPLIMVLEDLGVRKEAMLELQ 701
Query: 415 REAVRQLDAILTDPLKAQEALELM---SPGENTNI------LKELLICGYKPDAEP---- 461
A ++T E + L+ + G++ + L+ +C + P
Sbjct: 702 NLAKA---VVVTASDSMGETINLLRKHALGDSFGLRHILEHLRRAGMCMRREAGSPDVMD 758
Query: 462 --FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQL 519
F+ +++ + L E++ RI IPN ++G DE G ++Q +++
Sbjct: 759 NDFILQLVKYAQHHILHEIKHDARIPIPNAHQLVGVADE------GPAYMQREEYKDKEV 812
Query: 520 H--GESSLFSSSR---SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA------LHHM 568
G +F+ + V+G V ++++P +HPGDV+ ++A+ P ++
Sbjct: 813 FCLGMGEIFACVEQPDGGEPLYVKGQVTISRSPHIHPGDVQRVRAIGKPPDDKLCLFRNL 872
Query: 569 VDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQ 628
+ VV P G R + +G D+DGD + V D L+P P Y +
Sbjct: 873 RNVVVLPSVGERSLASCLAGGDVDGDEFLVIKDPTLLPTTNADPASYDAGDPRDIGRPST 932
Query: 629 IEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPA 688
I+D+ + Y+ +D +G++A+ H AD C+ LA S AVD+PK GVP
Sbjct: 933 IDDICNFLLEYMQSDVMGLVADQHLKIAD----------CMVLARLCSQAVDYPKNGVPV 982
Query: 689 EIP--PHLYVKEYPDFMEKPD---KPT--YESQNVIGKLFR--AVKDI-APHTS 732
+ P ++ PD+ + D +P+ YES +G LFR +K + AP TS
Sbjct: 983 NLESMPEPLIRAKPDWKKSEDNDPRPSDYYESTRALGALFRNFEIKPLHAPETS 1036
>gi|409046075|gb|EKM55555.1| hypothetical protein PHACADRAFT_161565 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1108
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 186/634 (29%), Positives = 293/634 (46%), Gaps = 92/634 (14%)
Query: 144 HRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSAT 203
+ +VTPSR+ GP NRV+R + NFLR+SF+DE+ + R
Sbjct: 324 YHAKVTPSRLLLEGPFPERCNRVVRKYAGHTSNFLRVSFMDENRLQYRFD----RDVDGY 379
Query: 204 DITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF--------ASRYGLTA 255
D R R T + G+ I R F+FLA+S S L+ S W + +T
Sbjct: 380 DFIRKRFGTLLF----EGLWIAGRHFKFLAYSQSALKNHSVWFVRDFTAHENGTEVHVTV 435
Query: 256 AEIREWMGNFREI-------RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK 308
I +G FR + R A+Y AR+ Q+F++++ + V ++E+ + D+ G
Sbjct: 436 DSIIAGLGIFRNVPQDLELMRCPARYGARVAQAFTTTEAAVEVEVEEVFPVEDMMDPNGY 495
Query: 309 TKYVFSDGIGKVSAEFARKVASKCGLKD--------NPPSAFQIRYGGYKGVVAADPT-S 359
F+DGIG VS E A + K P AFQIR+ G+KG+++ D S
Sbjct: 496 RS--FTDGIGLVSQELAADIWGALQEKSVRHRRYGRCMPRAFQIRFQGFKGMLSVDHNLS 553
Query: 360 SKKLSLRDSMRKYES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTL------GIWDEIFE 411
+ + LR SM+K+E+ E ++V A++K +L+R L LL L GI+ + +
Sbjct: 554 GRAVCLRLSMKKFEAPESMTIEVASAFNKPGRLYLSRPLTMLLEGLKVRGGFGIFKTLQD 613
Query: 412 ---KKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQ 468
K +EA R T EA L + + ++I +L G + +PFL L+
Sbjct: 614 AVIKDTKEATRSFRQAAT----LWEAYGLGTAFKLSSIFLDLAKFGSEAIEDPFLLQCLK 669
Query: 469 TFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSS 528
L +L+ RI +P G S++G D L G++F ++ + +SS
Sbjct: 670 FGIYHILRDLKYHARIPVPKGYSLVGVADIHGYLKEGEIFACVAQS-----------WSS 718
Query: 529 SRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD------CVVFPQKGMRPH 582
+ +HPGDV+V A+ P + D VVF +G RP
Sbjct: 719 T-------------------IHPGDVQVATAIGRPPPGTVFDEEPLTNTVVFSTRGTRPL 759
Query: 583 PNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVN 642
+ SG DLDGD++ + + L+P + P +Y AQ + H DV ++ Y +
Sbjct: 760 ASCLSGGDLDGDVFMLTTLEGLLPTEIYEPAEYASAQRKTVPHTSTRRDVADFILEYFYS 819
Query: 643 DSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPA---EIPPHLYVKEY 699
D++G+I ++ V AD+ + E CL LAE S A D+PKTG P ++P +
Sbjct: 820 DNIGMIVSSWLVQADQSDQGIFDEACLTLAELHSDAADYPKTGNPVSMRKVPRYALPTMK 879
Query: 700 PDFM--EKPDKPT--YESQNVIGKLFRAVKDIAP 729
PD+ E D+ Y+SQ IG+L+R V+ P
Sbjct: 880 PDWSAPEIQDRLGLFYQSQRSIGRLYREVQLPVP 913
>gi|393235346|gb|EJD42902.1| RNA-directed RNA polymerase [Auricularia delicata TFB-10046 SS5]
Length = 1654
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 169/550 (30%), Positives = 253/550 (46%), Gaps = 70/550 (12%)
Query: 163 SNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGI 222
SNR+LR+ D F+ +SF + + + + D R +A G+
Sbjct: 49 SNRILRN--DDPSKFISVSFREFRMPEYTTVDYIKRFLAA------------------GL 88
Query: 223 LIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM---GNFREIRNVAKYAARLG 279
+ DR++ F S SQLRE ++ R + E+ + G+F I NVAK A R+G
Sbjct: 89 FLDDRQYRFYHHSPSQLRERGCFL---REAASDEELDARIYSYGDFSRINNVAKRAKRIG 145
Query: 280 QSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL----K 335
FS + ++ E I D+ + +FSDG G VS A ++ + +
Sbjct: 146 LLFSGASIDYNLDPQFTEDIDDIIV----GNELFSDGCGLVSRRLAVALSRQKKIVFRGA 201
Query: 336 DNPPSAFQIRYGGYKGVVAADPTSSKK----LSLRDSMRKYESELT-KLDVLAWSK-YQP 389
PS FQIRY GYKGV+ P + R SM+K+ + L V+ +S Y
Sbjct: 202 RYTPSVFQIRYRGYKGVLMLHPELDRSHGPLAQFRRSMKKFNATLDDTFTVVGYSTPYAF 261
Query: 390 CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKE 449
LN +I L+S+LGI +E KQ E D +L A++L+S + + +
Sbjct: 262 GRLNNDVIVLISSLGITNETLLAKQAE---YFDWLLRAVSDVSCAVDLLSCLGDFAMAER 318
Query: 450 LLICGYKPD-----AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNY 504
+L+ G D +S +++FR R ++R+ I R + G D L
Sbjct: 319 VLLDGLDADHVQKALAGIVSREVKSFRKDNG---RLRSRMIIRKSRLLFGVCDPFGVLRE 375
Query: 505 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 564
G+V V++S + R + V+V KNPCLHPGDV L AV P
Sbjct: 376 GEVHVRVS---------------AGRQPATTLTHCDVLVVKNPCLHPGDVLKLHAVENPR 420
Query: 565 LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLD 624
L H+VDCVVFP G R + SGSDLDGD +FVCWD ++IP + P Y P Q+
Sbjct: 421 LAHLVDCVVFPSVGKRAPASMTSGSDLDGDQFFVCWDSDIIPSKTTDPYLY-PKGKEQIS 479
Query: 625 HDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKT 684
+ +D+ +F Y S+ +A H+ +A + A CL+L+ S+AVD K
Sbjct: 480 RSISRQDLAAHFAAY-SGASIAKVAGLHSKWARHSQQGAMCTECLELSALHSLAVDGGKI 538
Query: 685 GVPAEI--PP 692
VP + PP
Sbjct: 539 KVPKRLTEPP 548
>gi|389741441|gb|EIM82629.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1527
Score = 199 bits (507), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 153/509 (30%), Positives = 239/509 (46%), Gaps = 52/509 (10%)
Query: 215 LSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKY 274
L + G+ + ++ F S+SQLR ++ + ++ G+F +I NVAK
Sbjct: 41 LRFFQAGLFLNGVQYRFYGHSNSQLRSGGCFLRRANSDEELDQVVYAKGDFGKIMNVAKR 100
Query: 275 AARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL 334
A R+G FS ++ + I D+KI VFSDG G +S + +++ K G+
Sbjct: 101 AKRIGLLFSGAEVDYMLDPQYTGDIDDLKI----GDEVFSDGCGLISRWLSVQISKKKGI 156
Query: 335 KDN----PPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLD-----VLAWS 385
N P FQIRY GYKGV P + RK + + T D ++ +S
Sbjct: 157 VHNRRRYTPCVFQIRYRGYKGVQMLHPPLDAAKIHQAEFRKSQKKFTATDDMIFSIVDYS 216
Query: 386 K-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENT 444
K + LN ++ LLS+LG+ ++ F Q+E + +DP+ A EL S
Sbjct: 217 KPHTFGRLNNEITILLSSLGVTNDDFVALQQEYFDWVQRASSDPV---HAFELFSTLGKH 273
Query: 445 NILKELLICGYKPDAEPFLSMMLQTFRASKLLEL-------RTKTRIFIPNGRSMMGCLD 497
+I + +L+ G P + +++ +A+++ + + R+ I R + G D
Sbjct: 274 DIAERVLLDGLD---SPTIVKQIRSAQAAEIQAFHKEGDATKERVRMLIRKSRRLFGVCD 330
Query: 498 ETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 557
L GQV V+I+ SR+ I V+V +NPCLHPGD+ L
Sbjct: 331 PFGVLKEGQVHVRIT---------------VSRAGASTINHLDVIVVRNPCLHPGDILKL 375
Query: 558 KAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTP 617
+AV+ P L H+VDCVVFP G R P+ SG DLDGD YFVCWD L+P + Y P
Sbjct: 376 RAVDHPQLSHLVDCVVFPSVGKRAAPSMSSGGDLDGDEYFVCWDPRLVPKKISESYTYPP 435
Query: 618 AQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSI 677
+ + + +D+ +F +Y N + A H +A P A S+ C +L +S
Sbjct: 436 NKEFT-QNKITRQDLARHFASY-NNSGMAKAAKYHNKWARYPPDGALSKECQELNALYSQ 493
Query: 678 AVDFPKTGVPA---EIPPHLYVKEYPDFM 703
AVD + +PA E+P + PDF+
Sbjct: 494 AVDGARVSIPARLTEVP-----ESRPDFI 517
>gi|393247227|gb|EJD54735.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1217
Score = 199 bits (506), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 180/644 (27%), Positives = 289/644 (44%), Gaps = 86/644 (13%)
Query: 136 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKI-HSTD 194
L + + V V+P+ V GP + NRVL +R +NF+R++F+D D + D
Sbjct: 387 LSRSMSSILHVSVSPANVSIIGPIPDDLNRVLYQYRAYHENFIRVAFVDNDGQPFRYDPD 446
Query: 195 LSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRE--SSAWM---FAS 249
++ T+ + +L LR+G+ +G R F+FLA+S S L++ W+ F
Sbjct: 447 VN---------TQALVDAHVLPILRDGLTLGGRLFKFLAYSQSGLKQHWEQVWLVHTFTD 497
Query: 250 RYGLT--AAEIREWMGNF-REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEI 306
G T A+ IR +G F ++ R A+ AR+ +FS++ + S+ + + +PD+
Sbjct: 498 ALGHTHSASTIRASLGTFTKDERCPARVGARMSLAFSATVPSGSLSVARLRNLPDIG--- 554
Query: 307 GKTKYVFSDGIGKVS-AEFARKVASKCGLKDN---------PPSAFQIRYGGYKGVVAAD 356
G +DG G +S A R C + PS Q+R G KGV+ D
Sbjct: 555 GDGHTCMTDGAGLISRAAMDRAWIHFCAARGRRGRTAELPPAPSVIQVRVKGAKGVLLVD 614
Query: 357 PT-SSKKLSLRDSMRKYES--ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEK 412
PT ++ +R SM K+ + + +++ A++ FLNR LI +L G+ E F
Sbjct: 615 PTLQGLRIVVRPSMVKFSAGEQYDNIEICNAFTAPSRAFLNRPLIMVLEARGVPKETFLW 674
Query: 413 KQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYK----PDAE-------P 461
Q++ V + + L A LE GE+ N+ L + P+ E
Sbjct: 675 LQQQVVAETQLAVQSLLPAAALLESNGLGESLNLPTLLRRIASRFANFPEVEQHLVAEDA 734
Query: 462 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG 521
F++ L L L+ + RI +P+ +++G D L G+V V I
Sbjct: 735 FMTRCLDFAVNHVLRGLKFRGRIPVPDSWTLVGVPDHHGILEEGEVLVGI---------- 784
Query: 522 ESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFP 575
R R++ +G V V ++P HPGDV V++A+ P L +C+VF
Sbjct: 785 ----MDGDPLRLRYL-KGGVTVTRSPVCHPGDVMVMRAIGPPRAGSAFELLRPKNCIVFS 839
Query: 576 QKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEY 635
KG R + G D DGD Y V + PP+ P Y + + + ED+ +
Sbjct: 840 TKGSRSPVSCLGGGDYDGDEYVVMKPAYMRPPEPAAPAMYKNSPRQDIGRRYRKEDLLKV 899
Query: 636 FTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVP---AEIP- 691
++I ND L IA AD P+ CL+L+ SIAVDFPKTG+P A+IP
Sbjct: 900 VPDFINNDQLPRIAATWLRIADISPQGVYDPRCLKLSALHSIAVDFPKTGIPVKHADIPQ 959
Query: 692 -PHLY----------VKEYPDFMEKPDKPTYESQNVIGKLFRAV 724
P+++ FM++ Y S +G L+RA+
Sbjct: 960 APNMFPDWSMSELGAADHNKSFMDR----IYPSDRALGHLYRAI 999
>gi|409046078|gb|EKM55558.1| hypothetical protein PHACADRAFT_173705 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1167
Score = 199 bits (505), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 174/627 (27%), Positives = 286/627 (45%), Gaps = 68/627 (10%)
Query: 144 HRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSAT 203
+ V +TPSR GP +NRV+R + NFLR+ F DE+ R
Sbjct: 379 YHVTITPSRFILSGPFPERNNRVMRKYASHTSNFLRVDFADEE-------GFQYRMDRVL 431
Query: 204 DITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----SRYGLTAAEIR 259
D +R + R L G ++ DR F+FL +S S L++ + W S +T I
Sbjct: 432 D-SRRFVRERFGRFLSQGFVLVDRHFDFLQWSQSGLKQHAVWFVKEFQMSHDTVTVDSII 490
Query: 260 EWMGNF-------REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYV 312
+G F R + A+ AR +F+++ + V +EI + PD IE K
Sbjct: 491 ADLGTFHDTPYDPRLMYCPARLGARRALAFTTTDAAVEVEAEEIVVEPD--IEDANGKRS 548
Query: 313 FSDGIGKVSAEFA-------RKVASKCGLKDNPPSAFQIRYGGYKGV-VAADPTSSKKLS 364
F+DG G +S E RK + + P Q R+ G KG + + L
Sbjct: 549 FTDGAGLISEELMTAVWEELRKKSRRYRRAHMMPDVIQHRFQGSKGTSTVSRRLPGRVLV 608
Query: 365 LRDSMRKYESELTKLD--VLAWSKYQPCFLNRQLISLLSTLGIWD--EIFEKKQREAVRQ 420
+R SM K+E+ +++ A+++ P LNR LI LL L I EI +K Q +++
Sbjct: 609 IRPSMIKFEATGSRMVEVAAAFTRAGPFRLNRPLIMLLEGLRIRGGYEILKKLQDAVIQE 668
Query: 421 LDAILTDPLKAQEALELMSPGEN---TNILKELLICGYKPDAEPFLSMMLQTFRASKLLE 477
A LE G +++ L +PF +L L +
Sbjct: 669 TKDAANSLSTAARLLEPHGLGTGFKVSSVFANLARLELDSMPDPFFHRVLNVAIYHILRD 728
Query: 478 LRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIV 537
L+ RI +P G +++G D L G+VF ++ +S + + +
Sbjct: 729 LKYHARIPVPGGYTLVGVADPYGYLGEGEVFACVT---------------TSTNAEPIFL 773
Query: 538 QGLVVVAKNPCLHPGDVRVLKAVNVPAL------HHMVDCVVFPQKGMRPHPNECSGS-D 590
+G ++++++P +HPGDV++++A+ P H +++ +VF G RP P C G+ D
Sbjct: 774 EGEMMISRSPTVHPGDVQIVRAIGRPPKGSEFDKHPIMNALVFATIGKRP-PASCLGNGD 832
Query: 591 LDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIAN 650
LDGD+Y +EL+P Q P Y A ++ H +D+ ++ T +I +D++GIIA+
Sbjct: 833 LDGDVYVCTTKEELLPKQTRAPASYDAAARKEVPHQSTQQDMADFVTEFICSDNIGIIAS 892
Query: 651 AHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAE---IPPHLYVKEYPDFMEKPD 707
AD+ R CL+LA S+A D+PKTG+P +P + PD+
Sbjct: 893 RWLELADK--RGIFDPGCLRLAYLHSLATDYPKTGLPVPLEYLPGTDMRRGRPDWSAPET 950
Query: 708 KPT---YESQNVIGKLFRAVK-DIAPH 730
+ + Y+S +G+LFR V+ + PH
Sbjct: 951 EGSRRFYQSTRYLGRLFREVRLPVPPH 977
>gi|170577358|ref|XP_001893975.1| RNA dependent RNA polymerase family protein [Brugia malayi]
gi|158599674|gb|EDP37189.1| RNA dependent RNA polymerase family protein [Brugia malayi]
Length = 261
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 117/270 (43%), Positives = 166/270 (61%), Gaps = 29/270 (10%)
Query: 470 FRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFS 527
F+ L +L K +I IP+ GRSM G +DET L +GQ+FVQ + + L +
Sbjct: 3 FKYHYLEKLIAKIQIQIPSHLGRSMFGVMDETGQLQWGQIFVQCTRNIW--------LKT 54
Query: 528 SSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECS 587
S S +FI++G V++ KNPC+ GDVRV +AV++P LHH+VD VVFPQ G RPHP+E +
Sbjct: 55 PSPSAAKFILKGKVMLTKNPCIVAGDVRVFEAVDIPELHHLVDVVVFPQHGPRPHPDEMA 114
Query: 588 GSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQS-MQLDHDVQIE-DVEEYFTNYIVNDSL 645
GSDLDGD Y V WD ELI +PP+D+T + S ++ + Q++ ++ ++F NYI DS+
Sbjct: 115 GSDLDGDEYSVIWDQELIFEHNEPPLDFTKSTSGNKIIDEAQVDLEMRKFFVNYIKQDSI 174
Query: 646 GIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTG-VPAE-------------IP 691
G I+NA V AD SE C+ +A+K S AVDFPKTG PA +P
Sbjct: 175 GSISNAFLVNADL--YGITSEVCINIAKKHSKAVDFPKTGDAPAPLTRQWTHDKNGNMLP 232
Query: 692 PHLYVKEYPDFMEKPDKPTYESQNVIGKLF 721
P + +PDFM K +P+Y S ++G+L+
Sbjct: 233 PE-RAERWPDFMCKNHEPSYISSRLVGQLY 261
>gi|241633128|ref|XP_002410399.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215503416|gb|EEC12910.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 756
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 143/387 (36%), Positives = 208/387 (53%), Gaps = 34/387 (8%)
Query: 115 LTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDI 174
L + +RK+ + P P G V RV VTPS V+F P ++ NRVLR F D
Sbjct: 391 LPELFRKFCLAYVPPKVP-----RGSCLVRRVFVTPSCVFFLPPNVHSENRVLRCF--DA 443
Query: 175 DNFLRISFIDEDLDKI-HSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLA 233
+ LR+SF D++L + HS + D T + LR GI +G R+F+FLA
Sbjct: 444 EYALRVSFRDDNLQHLSHSLMFHRQKEEMVD-------TIVAKFLRTGIEVGGRQFKFLA 496
Query: 234 FSSSQLRESSAWMFA-SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSV- 291
S SQLR+ W++A R G TA IR WMG+F I NVAK AR+GQ FSS++E++ V
Sbjct: 497 SSCSQLRDHGVWLYAMDRQGFTAESIRRWMGDFSAIPNVAKKMARMGQCFSSTEESVKVP 556
Query: 292 -HMDEIEIIPDVKIEI----GKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRY 346
H +E +PDV + GK ++ FSDGIG +S +KV K L + PSA QIRY
Sbjct: 557 LHGGNMEEVPDVVGGVHPVSGK-EFTFSDGIGMISTSLMQKVCKKLDLAE-VPSAIQIRY 614
Query: 347 GGYKGVVAADP-TSSKKLSLRDSMRKYE-SELTKLDVLAWSKYQPCFLNRQLISLLSTLG 404
GYKG++ +P KL LRDSMRK+ S L+V+ S + +LNR LI++L LG
Sbjct: 615 AGYKGMLCVNPELRGDKLVLRDSMRKFSCSNSDSLEVIKVSAPRTVYLNRFLITILEQLG 674
Query: 405 IWDEIFEKKQREAVRQL-DAILTDPLKAQEALELMSP--GENTNILKELLICGYKPDAEP 461
+ +F Q++ + DA++ + AL ++ G L+ L G+ +P
Sbjct: 675 VPSRVFLCLQQKMMLTFADALVCE----STALRVLCTYVGGTLPFLR-LQQNGFCLARDP 729
Query: 462 FLSMMLQTFRASKLLELRTKTRIFIPN 488
F+ ++L T S + + R + ++F P
Sbjct: 730 FVRLLLYTVYRSTMGKRRCRPQLFWPG 756
>gi|353236430|emb|CCA68425.1| related to NAM7-nonsense-mediated mRNA decay protein (RdRP)
[Piriformospora indica DSM 11827]
Length = 678
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 151/499 (30%), Positives = 243/499 (48%), Gaps = 57/499 (11%)
Query: 214 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW---MGNFREIRN 270
I L +G+ + +K+ F S+SQLR S ++ R G + A+I +G+F+ I +
Sbjct: 93 IARCLTSGVTLNGKKYFFYGHSNSQLRSHSCFL---RQGRSEADIHSRILSLGDFKSIDS 149
Query: 271 VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS 330
AK A R+G FS++++ + IPD + +G T +FSDG G +S +AR +A
Sbjct: 150 PAKLAKRIGLLFSAAEQDSVLDPSHTRDIPD--LMVGDT--LFSDGCGLISQAYARLLAK 205
Query: 331 KCGL----KDNPPSAFQIRYGGYKGVVAADPTSSKK----LSLRDSMRKYESELTKLDVL 382
K PS FQIRY GYKGV+ P + + R SMRK+ D L
Sbjct: 206 KKQAIFRQVKYVPSVFQIRYKGYKGVLMLHPPLDSQNDGYVHFRKSMRKFTG--VPNDTL 263
Query: 383 AWSKYQPCF----LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELM 438
+ KY + LN ++++LLS+LGI DE+ K R + L + T+ AL+ +
Sbjct: 264 SIIKYSVPYTYGRLNNEIVALLSSLGISDEVLLGKLRAYMSWLRTVCTN---LSSALDFV 320
Query: 439 SPGENTNILKELLI-----CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 493
S + ++++ +L+ G + + + L ++ F+ + + K R+ + N R +
Sbjct: 321 SSIDKHSLVERILLEGIDSAGIQRELKKALKQEIEKFKKVDIE--KKKLRVLVNNSRRLF 378
Query: 494 GCLDETRTLNYGQVFVQIS--GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 551
G D + L G+VFV+++ AG R +H S V++ +NPC+HP
Sbjct: 379 GVCDPFQILREGEVFVRVTMPHAGPRTIHSCS-----------------VLIFRNPCMHP 421
Query: 552 GDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP 611
GD L+AV+ P L H+VDCVVF KG P+ SG DLD Y + WD +LIP +
Sbjct: 422 GDCLKLRAVDKPELRHLVDCVVFASKGRHAAPSLSSGGDLDE--YTIIWDKDLIPSRVFE 479
Query: 612 PMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQL 671
Y P + + + D+ +F NY + S+G A + + P A+S+ C L
Sbjct: 480 HYLYPPVKEKK-KSVITRRDLAAHFANY-NSISMGTTARLYWQWVRFHPEGAKSQECQDL 537
Query: 672 AEKFSIAVDFPKTGVPAEI 690
+S VD +P +
Sbjct: 538 NALYSQCVDGGSIKIPERL 556
>gi|330794390|ref|XP_003285262.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum]
gi|325084804|gb|EGC38224.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum]
Length = 2292
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 192/707 (27%), Positives = 322/707 (45%), Gaps = 115/707 (16%)
Query: 137 DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED------LDKI 190
DD + V V VTP+R+ P + NRV+R F D FL +F DE+ L+K
Sbjct: 1074 DDLFIPVKEVFVTPTRIVLVPPRLTSGNRVIRSFGNDPSRFLLYNFTDENFEPFLGLNKS 1133
Query: 191 HSTDLSPRGSSATDITRTRIYTRILSTLRNGILI---GDRKFEFLAFSSSQLRESSAWMF 247
H L + L+NG+ I + ++ S SQ ++ SAW +
Sbjct: 1134 HPLILDGQSKH----------------LKNGLEIIPLSGEYYRYIGNSQSQSKKYSAWFY 1177
Query: 248 ASRYGLTAAEIREWMGNFREI--RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE 305
+ +W G I R V + L FSS+ +++ + + + I DV
Sbjct: 1178 LEDPKYKIEDAFKWSGIDTSIPMRKVYRQFCLL---FSSTSKSIVIDKSKYKTIDDVYDS 1234
Query: 306 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPS-AFQIRYGGYKGVVAADPTSSKKLS 364
G + F++G G + + K +P + A+QIR GG KGVV + T S L
Sbjct: 1235 TGA--HNFTEGCGIIGKYLVDAINKKMNY--HPCTCAYQIRIGGSKGVVVLNDTDSISLG 1290
Query: 365 -------------LRDSMRKY-------ESELTKLDVLAWSKYQPCFLNRQLISLLSTLG 404
+R+SM K+ E+ T L++++ S C LNRQ I+LL G
Sbjct: 1291 NGKSIPMDPTCIYIRESMTKFMKDPSDDETHRT-LEIISVSTTSRCKLNRQAINLLLNAG 1349
Query: 405 IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL--ICGYKPDAEPF 462
++ + LD L + A L+ G + ++L E I Y+ + +
Sbjct: 1350 T-------EESSILSFLDKSLN-----ENAQTLVDIGLSKDLLNEFYPNISEYELFNDYY 1397
Query: 463 LSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGE 522
+ ++ +KLL ++ K I + + R+++G D + L QV+++++
Sbjct: 1398 IRTIVLKHFKTKLLRIQDKCHIEVEDSRNVLGVTDFSGKLGPNQVYLEVA-----DFDDN 1452
Query: 523 SSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPH 582
+++ S ++ G V V KNPC HPGD+R+L+AV++P LH + + F G P+
Sbjct: 1453 NNIIRSK------VITGRVAVLKNPCHHPGDIRILEAVDIPLLHGKRNILFFSINGEVPN 1506
Query: 583 PNECSGSDLDGDIYFVCWDDELIPPQ---QDPPMDYTPAQSMQLD----HDVQIEDVEEY 635
ECSGSDLDGD YF+ +D+ LI + DP + + A ++ + HDV + ++++
Sbjct: 1507 FKECSGSDLDGDRYFIVYDNVLINDKMKNSDPYLGESVAATVGGEGEGLHDVYLFNIDK- 1565
Query: 636 FTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTG----VPAEIP 691
TN LG ++N H + +D E SE + LA + +I VD KT +PA
Sbjct: 1566 -TN------LGKLSNKHLIISDLEG--VDSEIAIDLAIQCAIEVDSVKTNKHGVLPANAK 1616
Query: 692 PHLYVKEYPDFMEKPDKPT---YESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDP 748
+ P FM T Y S VIG+++ + S + F + D
Sbjct: 1617 AAMNKCGIPHFMASTTLGTTNIYHSDKVIGQIYDSA-------SRLMWFGDFLPEIKVDE 1669
Query: 749 DMEVDGFEDHID--DAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSI 793
+M VDG++++ID + I ++ Y ++ NL+ YG +E ++L G +
Sbjct: 1670 NMLVDGYKNYIDQKNLITYRL-YKTRINNLLRIYGSNSEEDLLLGFV 1715
>gi|403377070|gb|EJY88529.1| Suppressor of ascus dominance [Oxytricha trifallax]
Length = 1160
Score = 193 bits (490), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 165/655 (25%), Positives = 299/655 (45%), Gaps = 91/655 (13%)
Query: 137 DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS 196
DDG + + + +TP+ + +SN +LR + D FL++ F +DL+ S
Sbjct: 313 DDGKIEAYSLTITPTFNIYNLNSQQLSNVILRQNQNYHDKFLKVDFKGDDLEDAGQILQS 372
Query: 197 PRGSSATDITRTR--IYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY--- 251
G + + + + + GI I ++FL S+S L++ + WM +
Sbjct: 373 KYGFKQGKPIKHKNSLSNYVWKPISEGINILHMNYQFLGNSNSSLKQHTIWMLNTSQFED 432
Query: 252 ----------GLT-AAEIREWMGNFREI---------RNVAKYA-ARLGQSFSSSKETLS 290
G+ +I+E G+ ++ + + + AR Q FS ++
Sbjct: 433 KCDNVVRLYNGMELLQQIQESFGHLPKVVKSENKELNKGITLHTLARAAQLFSGTRHICE 492
Query: 291 VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYK 350
+ D+IE IPD+ I+ GK FSDG G +S E A K+ + L+D SA+Q R GG K
Sbjct: 493 LRADQIEYIPDI-IKNGKN---FSDGNGCISQELANKINAIYNLQD--CSAYQFRLGGCK 546
Query: 351 G-VVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEI 409
G +V +K+ +R SM+K+E+ T L++ + F NRQLISL+ GI E
Sbjct: 547 GTLVVNQELQGEKIQIRKSMKKFENSDTSLNIARCATPSQGFFNRQLISLIENQGIIFED 606
Query: 410 FEK-----KQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLS 464
E+ Q + + Q+++ + +K ++ + + +N L++ + + ++S
Sbjct: 607 IEQILESSDQLKFINQINS-FENTIKDEDLIFSQQQAKISN----LMLTNTQKEFINYIS 661
Query: 465 ----MMLQTF--------------RASKLL------ELRTKTRIFIPNGRSMMGCLDETR 500
M +TF SKLL +++ K RI I + ++G D +
Sbjct: 662 ESGQQMFKTFVEKRMDVQSDPFIKNLSKLLSHQITSQIKNKGRIPIKDSAILIGVADYLQ 721
Query: 501 TLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAV 560
L G++F+Q+ ++ ES ++ G V++ ++PCLHP DV +KAV
Sbjct: 722 VLQPGEIFLQVQDPD---INEESKDIYE-------VITGDVIITRSPCLHPNDVMKVKAV 771
Query: 561 NVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIP---PQ--QDPPMDY 615
N H+ + VVF G P ++ +G DLDGD++ + W++ L+ PQ + D
Sbjct: 772 NCNQYKHLNNVVVFSANGDEPIQSQLAGGDLDGDVFHIIWNERLVSQFTPQFLEKQKFDS 831
Query: 616 TPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKF 675
Q + + +++ + ++ N+ LG I + H D++ S+ L
Sbjct: 832 KRIVGYQAKYTLIPQEIADSLLHFFKNNILGKIDSLHLAICDKQS--PNSQHALSTEFLH 889
Query: 676 SIAVDFPKTGVPAEIPPHLYVKE-------YPDFMEKPDKPTYESQNVIGKLFRA 723
AVDF K G +I + ++ +PD+M+ + +Y SQ ++G ++RA
Sbjct: 890 QQAVDFQKHGCKPDIEEYHEIRNEGLDNQMFPDYMQSKSQDSYASQKIMGTIYRA 944
>gi|389748392|gb|EIM89569.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1274
Score = 192 bits (489), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 200/799 (25%), Positives = 350/799 (43%), Gaps = 139/799 (17%)
Query: 52 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE- 110
+ ++ F++ LL++NG ++ + N R+ + C EH D L++ E
Sbjct: 331 MNWDTAFQVELLMRNGLLSTTEVWVNL-------RSHIDNLCAEHGSDASEILRQFSVEL 383
Query: 111 ------PSRWLTDQYRKYMTSRSKPSS---PAISLDDGLVYVHRVQVTPSRVYFCGPEIN 161
S+ + R K + L D H + +TP+R+ GP
Sbjct: 384 ITGAASGSKTSPKDLLDMICGRMKDERMRLRKMDLPDSYFMCHHITITPTRMLLEGPYPT 443
Query: 162 VSNRVLRHFRRD----IDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILST 217
+NRV+R ++ + NF+R+ F DED R + A D + R+L
Sbjct: 444 QNNRVIRGYQEYDSTLVGNFVRVDFRDEDR-------FQYRFNRAVD-GGYLLEKRVLDF 495
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESSA-WM---FASRYG---------LTAAEIREWMGN 264
L+ G +G R F+F A+SSS LR+S A W F G +TA IR +GN
Sbjct: 496 LKPGFSLGGRHFDFFAYSSSSLRDSHALWAIHPFDVPVGASPTILCGHITADMIRHSLGN 555
Query: 265 FREIRNV-AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAE 323
F + N +K AAR+GQ+ S++ ++ + ++ + D +++G++ Y +DG+G +S++
Sbjct: 556 FSTVINQPSKLAARVGQTCSATTPSVRLKREQWD---DDMVDLGESPYEHTDGVGTISSD 612
Query: 324 FARKV----ASKCGLKDN---PPSAFQIRYGGYKGVVAAD-PTSSKKLSLRDSMRKYESE 375
++ SK KD P AFQIR+ G+KGVV D + ++ LR SM+K++ +
Sbjct: 613 LRDEIWATLCSKGWDKDKDRAKPDAFQIRFLGFKGVVVVDYCLTGIRMRLRPSMKKFDVD 672
Query: 376 LTKLD------VLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREA------------ 417
+ + V A+ + LNR I +L G+ + F K Q +A
Sbjct: 673 EEEKNNASFEIVRAFDRPNRYSLNRSTIMVLEDRGVPIDTFMKLQEKAKETIFTAGDSIA 732
Query: 418 -------VRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTF 470
+ +L PL E L ++ + N+++ PFL +L+
Sbjct: 733 SFVAFLRINRLGIGFDLPL-ILERLAVLKDSSHKNVVRSF--------ENPFLERVLRFA 783
Query: 471 RASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQ-----ISGAGYRQLHGESSL 525
S+L +L+ K +I +P G ++G DE GQ ++Q S A ++ + +
Sbjct: 784 MNSRLRDLKHKAQIPVPGGFKLVGVADE------GQAYIQEGLDPSSVATLKEGEIYACV 837
Query: 526 FSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA------LHHMVDCVVFPQ-KG 578
++ +F+ +G + ++P PGD++ ++A+ P + + VV P G
Sbjct: 838 RDGHKAEPKFL-KGDCFITRSPVNDPGDIQRVRAIGKPPEDKVCFFRGLQNVVVLPAVPG 896
Query: 579 MRPHPNECSGSDLDGDIY----FVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEE 634
R + G D+DGD++ F C D L+P PP +Y + LDH +DV
Sbjct: 897 TRSLASCLGGGDVDGDMFDIVGFDC-DSNLLPTLHKPPAEYKSVGTYTLDHPATEDDVWS 955
Query: 635 YFTNYIVNDSLGIIA-------------------NAHTVFADREPRKARSEPCLQLAEKF 675
+ YI +D LG+++ N V D+ + CL+LA+
Sbjct: 956 FVVEYIQSDVLGLLSERLLTIAGETLSSSVHRPTNGTDVSPDQSEDGMSNPLCLELAKLC 1015
Query: 676 SIAVDFPKTGVPAEI-----PPHLYVKEY--PDFMEKPDKPTYESQNVIGKLFRAVKDIA 728
S AVD+PK G+ E PP + + + ++ + Y+S +G+LF V ++
Sbjct: 1016 SQAVDYPKNGIAVETDRIPYPPTRFRPNWARAEVSDEREGDFYQSDRALGRLFENV-ELL 1074
Query: 729 PHTSCIRLFTKEVARRSYD 747
P + + +RS D
Sbjct: 1075 PTNAASNARSDSTHQRSSD 1093
>gi|343426952|emb|CBQ70480.1| related to RNA-directed RNA polymerase [Sporisorium reilianum SRZ2]
Length = 1037
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 170/610 (27%), Positives = 303/610 (49%), Gaps = 69/610 (11%)
Query: 142 YVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSS 201
++H + +TP+RV GP ++SNRV+R + D+F R+S E + +T ++P +
Sbjct: 132 FLH-IDLTPTRVLLSGPHWHMSNRVIRSYPGHWDHFARLSITSESREG--ATTITP--NY 186
Query: 202 ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF-----ASRYGLTAA 256
D I R+L L+NGI++ R+F+ LA+SSS + + W A+ + A
Sbjct: 187 GFDDAERYIRGRVLDILKNGIIVAGRRFQLLAWSSSSMSSHTVWFVTPFLDATGRLVDAN 246
Query: 257 EIREWMGNFRE-IRNVAKYAARLGQSFSSSKETLSVHMDEI-EIIPDVKIEIGKTKYVFS 314
+R+ +GNF++ IR A YA GQ H D + +I P + ++ ++ Y+ +
Sbjct: 247 SVRKSLGNFKDVIRKPAMYADN-GQD----------HTDGVGQISPALMADVWES-YLVN 294
Query: 315 DGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYE 373
G EF ++ LK + PSA QIR GG KG+++ +P + K L +R SM K++
Sbjct: 295 HG------EFRKRKL----LKASAPSAIQIRLGGSKGMLSLNPRLTGKVLYIRPSMSKFD 344
Query: 374 SELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 432
S+ L+V + S+ LNR L++ L G+ F Q EA+ Q+ + +
Sbjct: 345 SQHQDLEVANSSSRCLTAKLNRPLVNALDDRGVHASAFIAIQDEAISQIGRARHNFDETA 404
Query: 433 EALELMSPGENTNI------LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 486
+ S G N+ + ++ + D E F ++ + A+ L +++ K RI +
Sbjct: 405 RLVSAFSFGTGCNLRILFEKVHKVGLGAASTDPESFFLVLAKAVTAAALGDMKRKARIPV 464
Query: 487 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 546
G +++G DE L G+VFVQ+ + Q+ R I+ G ++ ++
Sbjct: 465 A-GVTLLGIADEFGYLKEGEVFVQVETVDFGQV-------------SRRILTGRKLIGRS 510
Query: 547 PCLHPGDVRVLKAVNVPALHHMV---DCVVFPQ-KGMRPHPNECSGSDLDGDIYFVCWDD 602
P + P D+ +++ P H ++ + VVF ++P P G DLDGD+Y + D+
Sbjct: 511 PTIDPSDITMVQCKKPPPGHPLLQLRNVVVFNTCTRLQPLPRRLGGGDLDGDLYTIYEDE 570
Query: 603 ELIPPQQDP-PMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPR 661
L PP P + + ++ +L H D+ ++F ++++ND +G++++ H +D
Sbjct: 571 RLFPPTPQPEAVFHAKVEAKELSHPCNAHDLADFFADFMLNDFVGLVSSLHLRISDASEA 630
Query: 662 KARSEPCLQLAEKFSIAVDFPKTGVP---AEIPPHLYVKEYPDFMEKPDKP----TYESQ 714
A C LA+ S A DF KTGV +++PP ++ PDF+ + +K Y S+
Sbjct: 631 GAADPRCKTLAKLHSQATDFRKTGVAVKRSQLPP-MHEPIVPDFLAQSEKREGKLVYSSR 689
Query: 715 NVIGKLFRAV 724
+G L+R+V
Sbjct: 690 RALGYLYRSV 699
>gi|403417878|emb|CCM04578.1| predicted protein [Fibroporia radiculosa]
Length = 1258
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 192/664 (28%), Positives = 300/664 (45%), Gaps = 99/664 (14%)
Query: 137 DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS 196
D + H V TP+R+ GP SN V+R + + D F+R+ F+DE+ D
Sbjct: 440 DKNIFTCHHVTFTPTRMILEGPSRLQSNSVVREYWENRDRFIRVDFVDENRSHFR-LDQE 498
Query: 197 PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS------- 249
G+S + R+ + L+ G I R FE L +S+S L + W
Sbjct: 499 VDGASF-------LQDRVGTILKGGFQIASRVFELLGYSNSSLGDHVFWFVNPFERVSRN 551
Query: 250 ------RYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 303
R +TA EIR +G+ EI AKYAAR+GQ+F+S+ ++ V DE E I ++
Sbjct: 552 ANGQEVREFITAEEIRRRLGDLSEIALPAKYAARIGQAFTSTYFSVQVVEDEWEEIEEIL 611
Query: 304 IEIGKTKYVFSDGIGKVSAEFARKV-ASKC---------GLKDNPPSAFQIRYGGYKGVV 353
+ K DG+G++S + A + C G+K PSAFQIR+ GYKGVV
Sbjct: 612 EDRDNPK-SHVDGLGRISQDLANAIWEGMCEEEPERRAYGVK---PSAFQIRFIGYKGVV 667
Query: 354 AAD-PTSSKKLSLRDSMRKYE-----------------SELTKLDVL-AWSKYQPCFLNR 394
A D +KL LR MRK++ + + L + A+ + +L R
Sbjct: 668 AVDRQLKGRKLCLRPEMRKFKPHRCDGCRAKLFCAHLNNPIQSLHIAEAFHGPRRAYLTR 727
Query: 395 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTN---ILKEL- 450
+++L + DE+FE Q EA R K E L+ G +L+ L
Sbjct: 728 DPVTILEDREVRDEVFENLQDEAKRTTYMARDSSEKYLELLQSHHLGFQYRLPFLLQRLL 787
Query: 451 ---LICGYKPDAE-----PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL 502
L CG + AE PF + + L +L+T+ RI +PN ++G DE
Sbjct: 788 DIGLDCGSQILAENVLNDPFFLGLREYGIQHVLRDLKTRARIPVPNSYLLVGVADE---- 843
Query: 503 NYGQVFVQISGAGYRQLHGES-SLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 561
G + + + Y+ +G+ + S + ++GL + ++P +HPGDV+ + A+
Sbjct: 844 --GPAYTKQGHSVYQLKNGQIFACVQESPDAKPIWLKGLCFITRSPTVHPGDVQRVTAIG 901
Query: 562 VP--------ALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPM 613
P HM + VV P G R + G DLDGD+Y+V +L+P PP
Sbjct: 902 KPDVPDGQICLFEHMKNVVVLPTVGCRSLASCLGGGDLDGDLYYVFHYSQLLPVLHVPPA 961
Query: 614 DY----TPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCL 669
Y P + D DV ++ Y+ +D LG+++ V AD+ + + C+
Sbjct: 962 AYPDEKPPPRQFTFD------DVCDFIVEYMHSDVLGLLSVRRLVIADQSQEGSLDKRCI 1015
Query: 670 QLAEKFSIAVDFPKTG--VPAEIPPHLYVKEYPDF------MEKPDKPTYESQNVIGKLF 721
+LA S AVD+PKTG V + P + PD+ + P Y+S +GKL+
Sbjct: 1016 ELARLCSDAVDYPKTGRAVNSRTAPKKLLPYSPDWHADEDNISDPLADCYQSDRALGKLY 1075
Query: 722 RAVK 725
R +K
Sbjct: 1076 RRIK 1079
>gi|409044334|gb|EKM53816.1| hypothetical protein PHACADRAFT_125775, partial [Phanerochaete
carnosa HHB-10118-sp]
Length = 1091
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 165/580 (28%), Positives = 281/580 (48%), Gaps = 72/580 (12%)
Query: 164 NRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGIL 223
NR+L+ D F+ +SF +K+ D SPR + ++ + G+
Sbjct: 52 NRILQS--DDATKFVLVSF-----EKLRFPDTSPRVAQEY----------MIRFFKAGLF 94
Query: 224 IGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFS 283
+ ++ F S+SQLR S ++ + + +G+F +I + +K A R+G FS
Sbjct: 95 LNGTQYRFYGHSNSQLRSRSCFLRQAENDEELDALIYRLGDFLKITSASKRAKRIGLLFS 154
Query: 284 SSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL----KDNPP 339
+K ++ + I D+ + G+T FSDG G +S +FA++++ + + P
Sbjct: 155 EAKIDWNLQPRWTKDIDDIVVN-GET---FSDGCGLISVKFAKQLSKHKRILYHGRPYTP 210
Query: 340 SAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCF----LNR 394
+ +QIRY GYKGV+A DP ++ + R S +K+ + T+ D + + F LN
Sbjct: 211 TVYQIRYRGYKGVLAIDPRLTTDHVHFRKSQKKFTA--TQNDTFSVVDHSTPFAFARLNN 268
Query: 395 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICG 454
++ LL++LGI + F KQR L +D +A A +L+ + + LL+ G
Sbjct: 269 DIVVLLASLGISSDAFLAKQRGYHEWLQKA-SDGWEA--AFDLLCAANRYAMAERLLLEG 325
Query: 455 YKPDAEPFLSMMLQTFRASKLLELRT----KTRIFIPNGRSMMGCLDETRTLNYGQVFVQ 510
D++P + ++ + S+L +R + R +P R + G D L G+V V+
Sbjct: 326 I--DSKP-VRQEIRALQNSELASIRKNDRLRVRTLVPKSRFLFGVCDPYSVLREGEVHVR 382
Query: 511 ISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD 570
I G ++L + V+V +NPCL+PGD L+AV+ PAL H++D
Sbjct: 383 IMIPR----KGITTLTNVD-----------VLVVRNPCLYPGDCLKLRAVHHPALDHLID 427
Query: 571 CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIE 630
C+VF +G R P+ SG DLDGD + V WD +L+P + DY PA +L+ + +
Sbjct: 428 CLVFASRGRRAAPSMSSGGDLDGDKFTVIWDPDLVPRKVAQSYDY-PAPPERLNAKIARQ 486
Query: 631 DVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEI 690
D+ ++F Y + ++G +A H + P A S C +L +S+AVD G +I
Sbjct: 487 DLAKHFAAY-NSITMGRVAALHQKWIRLSPAGAMSAECQELNALYSLAVD----GGSIKI 541
Query: 691 PPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPH 730
P L VK + M++P V+ L A ++ A H
Sbjct: 542 PERL-VKVPQNVMQEP--------YVLDVLHDAAREFAEH 572
>gi|392569009|gb|EIW62183.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 793
Score = 189 bits (481), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 153/500 (30%), Positives = 239/500 (47%), Gaps = 60/500 (12%)
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREI---RNVAKY 274
+R G+ I ++ FL F+ SQ++ F +G T + G+ + KY
Sbjct: 65 VREGVEINGVRYRFLGFTESQVKAGKLMFFREGHGWTVERLLASFGDLSAVYLKSGYGKY 124
Query: 275 AARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL 334
+ARLG SFSS+ E+L V + +PD+K G +++DG G + FA+K+ +K
Sbjct: 125 SARLGLSFSSTVESLDVPREAAHEMPDLKAPDGS---LYTDGCGMIRDSFAKKLCTKHNF 181
Query: 335 KDNPP--SAFQIRYGGYKGVVAADP-----------TSSKKLSLRDSMRKYESELTKLDV 381
PP S FQ+R GG KG++ P +SS ++ R SM KYE T L++
Sbjct: 182 ---PPDTSVFQVRRGGIKGLLVRYPDEKFERLGGTSSSSHLIAYRPSMYKYEDGPTMLEI 238
Query: 382 LAWS-KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL--EL- 437
+ P LN Q LL +LG+ ++F++ ++ V + +I+TD KA + EL
Sbjct: 239 NNHNLPPAPAHLNVQFTVLLLSLGVPVDVFKRLLQDQVDIIGSIVTDREKALHYIKGELD 298
Query: 438 --MSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGC 495
+ G N ++ LL +EP++ L ++ + LR K + I + + G
Sbjct: 299 AGVEDGLNQSLYAMLL--AQHDLSEPYVRQRLLKYQEVQYESLRRKMNLRIMDSCYVFGV 356
Query: 496 LDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR 555
+DE L G+V+V + +R +V+ VVVA+NP HPGD+R
Sbjct: 357 VDEDSVLAPGEVYVNLP------------------ARSGILVRD-VVVARNPSYHPGDIR 397
Query: 556 VLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDY 615
L+AV+ P L H +C+VFP+KG R P+ S DLDGD+YFV W+ LIP + P++
Sbjct: 398 KLRAVDRPQLRHHRNCIVFPRKGPRSVPDTISSGDLDGDMYFVAWEPTLIPSTEMKPVNR 457
Query: 616 TPAQSMQLDHDV------QIEDVE----EYFTNYIVNDSLGIIANAHTVFADREPRKARS 665
+ S H Q+ D+ E F + LG +AN T D+ A +
Sbjct: 458 ALSMSAA-GHTATSASGRQLPDMPRAAVETFLQLRYSRLLGRMANEWTKAVDKTVDLANA 516
Query: 666 EPCLQLAEKFSIAVDFPKTG 685
E +L A+D KTG
Sbjct: 517 EFPRRLVPLIEAALDIMKTG 536
>gi|340960580|gb|EGS21761.1| hypothetical protein CTHT_0036280 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1520
Score = 189 bits (479), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 144/432 (33%), Positives = 214/432 (49%), Gaps = 41/432 (9%)
Query: 275 AARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL 334
A R+G FS+++ + D +E IPD++ G YVF+DG G +S A+ +A + G+
Sbjct: 2 AKRIGLLFSTARVAKVIPPDRVEDIPDIESPDG---YVFTDGCGLISPHLAQDLARRLGI 58
Query: 335 ----KDNPPSAFQIRYGGYKGVVAADP--TSSKK--LSLRDSMRKYES-ELTKLDVLAWS 385
+ PS QIRY GYKGVV DP TS + L +R SM+K+ + V+ +S
Sbjct: 59 VFRDRRYTPSVLQIRYRGYKGVVTVDPRMTSDPRILLRMRKSMKKFSGGDDHSFSVVEYS 118
Query: 386 K-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENT 444
K + FLN ++I LL+ LG+ EI +KKQ + L DP + A +S
Sbjct: 119 KPFTYGFLNDEVIVLLNALGVDREIIKKKQDNHFKFLADASRDP---RSAFRFLSGLNMP 175
Query: 445 NILKELLICGYKPDAEPFLSMMLQTFRASKLLELR--TKTRIFIPNGRSMMGCLDETRTL 502
++ + +L+ + S++ + +K+L R K RI IP R + G D L
Sbjct: 176 DLAESVLVESFDAIRPRIRSLVKNEY--AKMLNKREEQKCRILIPKSRLLFGVCDAWGVL 233
Query: 503 NYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNV 562
G+ V+I+ E+ L + ++ + V+V +NPCLHPGD++ + V
Sbjct: 234 KEGECAVKIT-------LEENGLPMALKNCE-------VLVTRNPCLHPGDLQKFRVVER 279
Query: 563 PALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQ 622
P L H+VDC+VF KG RP + SG DLDGD +FVCWD +LIP P Y +
Sbjct: 280 PELSHLVDCIVFSTKGKRPAADMMSGGDLDGDTFFVCWDLDLIPKTLSQPAKYPGVKEPI 339
Query: 623 LDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFP 682
+ +D E+F Y N SLG + N + +A S C +L FS VD
Sbjct: 340 RFTPITDDDRLEFFVRY-TNASLGRVKNLYLDWA--RAGGPMSPECQELNRLFSQCVD-- 394
Query: 683 KTGVPAEIPPHL 694
G +IPP L
Sbjct: 395 --GNRIKIPPRL 404
>gi|70608336|gb|AAZ04410.1| putative RNA-dependent RNA polymerase SDE1/SGS2/RDR6 [Nicotiana
benthamiana]
Length = 172
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 112/163 (68%)
Query: 439 SPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 498
S E N +L G+KP +EP L ML + RAS+L +LR K RIF+P+GR +MGCLDE
Sbjct: 10 SCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDE 69
Query: 499 TRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLK 558
L GQ F+Q+S + S + +++GLV++AKNPCLHPGDVR+L+
Sbjct: 70 LGELEQGQCFIQVSSPSLESCFVKHGPNFSDIKKNLQVIKGLVIIAKNPCLHPGDVRILE 129
Query: 559 AVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWD 601
AV+VP LHH+ DC+VFPQKG RPHP++ SGSDLDGD+YFV WD
Sbjct: 130 AVDVPGLHHLYDCLVFPQKGDRPHPDQASGSDLDGDLYFVTWD 172
>gi|302698389|ref|XP_003038873.1| hypothetical protein SCHCODRAFT_64962 [Schizophyllum commune H4-8]
gi|300112570|gb|EFJ03971.1| hypothetical protein SCHCODRAFT_64962 [Schizophyllum commune H4-8]
Length = 984
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 168/567 (29%), Positives = 258/567 (45%), Gaps = 86/567 (15%)
Query: 138 DGLVY--VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDI-DNFLRISFIDEDLDKIHSTD 194
DG V+ +H V VTP+ + GP SNR++R + D FLR+SF++E
Sbjct: 403 DGSVFDSLH-VIVTPTTMILEGPFPERSNRIIRMYDAKYHDCFLRVSFVEEG-------R 454
Query: 195 LSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF------A 248
L R D RT I RI L+ G+ I KFEFLA+S S L+E + W
Sbjct: 455 LQYRFDREVD-GRTFIRERIGPLLKKGLHIAGHKFEFLAYSQSALKEHAVWFVKPFRPDG 513
Query: 249 SRYGLTAAEIREWMGNFREIRN---VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE 305
R + AA I +G+F ++ A+YAARL Q+F+++ ++ V +EI D+
Sbjct: 514 QRADVNAATIIAGIGDFSTSKDRFCPARYAARLSQAFTATDASVFVEAEEIGYHDDISTS 573
Query: 306 IGKTKYVFSDGIGKVSAEFA-------RKVASKCGLKDNPPSAFQIRYGGYKGVVAAD-P 357
G Y F+DG+G +S E A R+ + P++FQ+R G KG+++ D
Sbjct: 574 DG--AYHFTDGVGTMSKEMARDTWTELRRTRKRARKSKGTPASFQVRLMGSKGMLSVDYK 631
Query: 358 TSSKKLSLRDSMRKYES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQR 415
+ + LR SM K+E+ + L++ A+ + +LNR LI LL LG+ E F K Q
Sbjct: 632 LRGRAVCLRPSMIKFEAPDSLNLEIARAFDRPGKYYLNRPLIMLLEGLGVPYETFLKYQD 691
Query: 416 EAVRQLDAILTDPLKAQEALELMSPGENTNI------LKELLICGYKPDAEPFLSMMLQT 469
AVR A LE G + + L++L I DA F ML+
Sbjct: 692 LAVRDAHRATESLEHAARMLEAFGLGTSFRLPSVLLNLEKLGIDHLPGDA--FYDRMLEF 749
Query: 470 FRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSS 529
L L+ RI IP +++G D R L G+VF + ++
Sbjct: 750 AINHVLRVLKNHARIPIPGAYTLVGVADVHRYLAEGEVFACVKEVDSNRIE--------- 800
Query: 530 RSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFPQKGM---- 579
++G ++++++P +HPGDV+V++A+ P A + + VVF KGM
Sbjct: 801 ------YLEGDILISRSPTIHPGDVQVVRAIGRPPAGSPFAQEPLANTVVFSVKGMLLGP 854
Query: 580 ----------------RPHPNECSGSDLDGDIY-FVCWDD---ELIPPQQDPPMDYTPAQ 619
RP P+ G DLDGD+Y +C D E P + P Y A
Sbjct: 855 FQARHEQHLTVSHSGSRPLPSMLGGGDLDGDVYNLICLDTTHPEFRPARTCDPASYAAAP 914
Query: 620 SMQLDHDVQIEDVEEYFTNYIVNDSLG 646
LD ++DV ++ +++ D G
Sbjct: 915 RKVLDRPANMDDVADFVLDFMSFDVRG 941
>gi|116195262|ref|XP_001223443.1| hypothetical protein CHGG_04229 [Chaetomium globosum CBS 148.51]
gi|88180142|gb|EAQ87610.1| hypothetical protein CHGG_04229 [Chaetomium globosum CBS 148.51]
Length = 1676
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 141/437 (32%), Positives = 210/437 (48%), Gaps = 45/437 (10%)
Query: 266 REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFA 325
R + A Y+ R Q + S + + +E IPD++ Y+F+DG G V+ + A
Sbjct: 139 RRLSGSASYSPRPRQPWPSRR-------NRVEDIPDIET----ADYIFTDGCGLVAPKLA 187
Query: 326 RKVASKCGL----KDNPPSAFQIRYGGYKGVVAADPT--SSKK--LSLRDSMRKYES-EL 376
+++A + G+ + PS QIRY GYKGVV DPT + KK L +R SM+K+ +
Sbjct: 188 QELARRVGIVFRDRRYTPSVLQIRYRGYKGVVTVDPTMAADKKYLLRMRKSMKKFSGGDD 247
Query: 377 TKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL 435
V+ SK Y +LN ++I LL LG+ + ++KQ E R L DP A L
Sbjct: 248 HSFSVVEHSKPYTYGYLNDEVIILLDALGVDRAVIKRKQEEHFRFLADATQDPRSAFRFL 307
Query: 436 ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR--TKTRIFIPNGRSMM 493
+ N L E ++ P + +++ A K+L R K RI +P R +
Sbjct: 308 CYV----NMPQLAERVLMDSLESVRPRIQALVKNEYA-KMLNKRDEQKCRILLPKSRLLF 362
Query: 494 GCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGD 553
G D L G+ V+I+ G G+ + V+V +NPCLHPGD
Sbjct: 363 GVCDAWGVLKEGECAVKITMDG----DGQPAALKGCD----------VLVTRNPCLHPGD 408
Query: 554 VRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPM 613
++ K V L H+VDC+VF +G RP + SG DLDGD +FVCWD +++P P
Sbjct: 409 MQKFKVVEKRELAHLVDCIVFSSQGRRPAADLMSGGDLDGDTFFVCWDSDIVPATLSQPA 468
Query: 614 DYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAE 673
Y A+ + +D EYF Y N SLG + N + +A R A +E C +L
Sbjct: 469 QYPGAKERLRFEPITDDDRLEYFARY-NNASLGRVKNLYLDWA--RARGAMAEQCQELNR 525
Query: 674 KFSIAVDFPKTGVPAEI 690
FS VD +P ++
Sbjct: 526 LFSQCVDGNFIRIPQKL 542
>gi|347841952|emb|CCD56524.1| hypothetical protein [Botryotinia fuckeliana]
Length = 461
Score = 182 bits (463), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 113/321 (35%), Positives = 171/321 (53%), Gaps = 11/321 (3%)
Query: 531 SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSD 590
+ Q +++G+ +V +NP LHPGD+RV++AVN+PALHH+ D VVFPQ G R P+ CSG D
Sbjct: 35 TTQYNVIEGICLVGRNPSLHPGDLRVVQAVNIPALHHLRDVVVFPQSGERDVPSMCSGGD 94
Query: 591 LDGDIYFVCWDDELIPPQQD-PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIA 649
LDGD +FV WD +L P + + PM Y + L V + D++++F Y+ NDSL IA
Sbjct: 95 LDGDDFFVIWDKDLQPTEWNCEPMSYAALDPVALKRPVVVTDLQKFFVKYMKNDSLPSIA 154
Query: 650 NAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKP 709
+AH AD + + + CL+LAE S AVD+ KTG PA + +L ++P FMEK +P
Sbjct: 155 HAHLAQADYQKQGIKDPKCLKLAELHSKAVDYVKTGQPATMQKYLAPPKWPHFMEKIHQP 214
Query: 710 T---YESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHK 766
Y SQ ++G+L V+ + F K + R+Y+ D + A K
Sbjct: 215 ASKQYHSQKILGQLHDKVESVDFVPQYEEPFDKRIL-RAYELDNAT------LKAARQTK 267
Query: 767 GNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKE 826
YD + ++ IKTE E+ + I+ K + + E + + AL+ R+
Sbjct: 268 TKYDTAMRRILAQQDIKTEFEVWSTFILSKPKVGSDYKLQEDMAVITGALKDRFRSVCIN 327
Query: 827 KSGSDTEDDAYAKASAWYHVT 847
+G +A Y VT
Sbjct: 328 TAGGKDFSILGPFVAAMYKVT 348
>gi|400596583|gb|EJP64354.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 527
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 138/436 (31%), Positives = 205/436 (47%), Gaps = 37/436 (8%)
Query: 478 LRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSR--SRQRF 535
++ K RI I +MGC+DET TL + + S + + + L S R +
Sbjct: 1 MKEKCRIQIEKSAFVMGCVDETGTLRGHSIQTEGSRGKNKAVLPQIFLQMSDRKYGNKTT 60
Query: 536 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDI 595
I+QG+ + +NP LH GD+RV++AV+ P L H+ D VVFP KG R P+ SG DLDGD
Sbjct: 61 IIQGVCFIGRNPSLHAGDIRVVEAVDTPCLRHLKDVVVFPSKGDRSLPSILSGGDLDGDE 120
Query: 596 YFVCWDDELIPP-QQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTV 654
YFV WD L+P PPM TP L+ V+++D+ + Y+ ND LG +A AH
Sbjct: 121 YFVIWDSTLVPKIWNSPPMHSTPVTPQDLERGVEVDDLRNFAVKYMKNDCLGFVAVAHLA 180
Query: 655 FADREPRKARSEP-CLQLAEKFSIAVDFPKTGVPAEIPPHLYV-KEYPDFMEKPDKPTYE 712
AD + P CLQLA+ S AVD+ KTGVPAE Y ++P FM++ + TY
Sbjct: 181 HAD---ALGLNHPICLQLAKLHSQAVDYLKTGVPAEWNRARYQPSKWPHFMQR-NSCTYP 236
Query: 713 SQNVIGKLFRAVK----DIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGN 768
S +GKL+ V D P SC F + +R D ++ + A K
Sbjct: 237 SHKALGKLYNRVAEENFDYVP--SCEDEFDSRITQR-------FDFTDEILASARNLKQQ 287
Query: 769 YDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKS 828
YD + L+ + + TE E+ +G M + + E +G +++ R +++
Sbjct: 288 YDVAVRRLLKQFRVATEFELYSGWAMSKPAVGSDYKLQEDLGQQFDTVKQRFREMCIQEA 347
Query: 829 GSDTEDDAYAKASAWYHVTYH--PDYWGCYNQGMNRDHF-------LSFPWCVYDRLVEI 879
G +A Y VT D+ + +SFPW + LV+I
Sbjct: 348 GIAGGSKLEELVAAIYKVTEDEAKDFLAEAEAEGEALEYSPKAMPLISFPWIFHWVLVKI 407
Query: 880 ------KKDKTSIGNA 889
+ KTS+ A
Sbjct: 408 AMGHSYQPSKTSLAAA 423
>gi|170117206|ref|XP_001889791.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
gi|164635257|gb|EDQ99567.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
Length = 1690
Score = 179 bits (455), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 155/513 (30%), Positives = 238/513 (46%), Gaps = 54/513 (10%)
Query: 214 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAK 273
I L+ G + D ++ F S+SQLR S ++ + + +G+F I N+AK
Sbjct: 93 IARLLKAGFFLNDIQYRFYHHSNSQLRGRSCFLRQANNDKELDDRIYQLGDFGRIMNIAK 152
Query: 274 YAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEF--ARKVASK 331
A R+G FSS++ + I IPD++ +FSDG G +S A A +
Sbjct: 153 RAKRIGLLFSSAQIDYRLDPKYIADIPDIQ----DGDELFSDGCGLISKRLSIALSKAKR 208
Query: 332 CGLKD--NPPSAFQIRYGGYKGVVAADP---TSSKKLS-LRDSMRKYESELT-KLDVLAW 384
++ P+ FQIRY GYKGV+ P K L+ R SM+K+ + V+
Sbjct: 209 ITFRNVRYTPTVFQIRYLGYKGVLMLHPQLDAEGKHLAQFRKSMKKFTTTTDHTFSVVGH 268
Query: 385 SK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN 443
S+ Y LN +I LLS LG+ +E KQ E + L DP A++ +S +
Sbjct: 269 SRPYTFGRLNNDIIVLLSCLGVTNEKLLNKQDEYFQWLRNATEDP---TAAVDFLSCIDQ 325
Query: 444 TNILKELLICGYK-PDAEPFLSMMLQTFRASKLLELRTK--TRIFIPNGRSMMGCLDETR 500
+ ++L+ G PD + LQ ++ + R K +R+ I R + G D +
Sbjct: 326 YPLAGKVLLNGINDPDVAKEIRR-LQLGEIARYTDEREKFKSRMIIRESRRLFGVCDPFQ 384
Query: 501 TLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAV 560
L G+V ++I +SR + G V++ +NPCLHPGD L+AV
Sbjct: 385 VLKEGEVHIRIM---------------ASRKGPSTPIHGDVLIVRNPCLHPGDCLKLRAV 429
Query: 561 NVPALHHMVDCVVF---PQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTP 617
+ L H+VDC+VF + G P+ SG DLDGD + VCWD +L+PP+ DY P
Sbjct: 430 HNDKLSHLVDCLVFASVARPGHHAAPSMSSGGDLDGDEFLVCWDKDLVPPRISESYDY-P 488
Query: 618 AQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSI 677
++ V ED+ +F +Y L ++ H +A P+ A S C +L S
Sbjct: 489 GNKERISKKVTREDLAVHFASYNAA-GLARVSALHNKWARYSPQGALSVQCQELNALHSQ 547
Query: 678 AVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPT 710
+VD G +I PD + KP +PT
Sbjct: 548 SVD----GAGIKI---------PDRLTKPPEPT 567
>gi|406695038|gb|EKC98353.1| RNA-dependent RNA polymerase [Trichosporon asahii var. asahii CBS
8904]
Length = 1018
Score = 179 bits (453), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 139/457 (30%), Positives = 229/457 (50%), Gaps = 45/457 (9%)
Query: 140 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 199
+V + V VTP+RV P+ SN V R + +D +R+ F DE ++++ +
Sbjct: 376 IVMIRTVTVTPTRVLVGPPQPETSNSVTRRYSDKLDAIIRVHFTDEG-ERLNVQKFTKPA 434
Query: 200 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 259
A + R+ L+ GI + ++ +A S SQ ++ + W F + E+
Sbjct: 435 DDAC--PEKGLMARVRRALQYGIEVAGCRYYPVASSGSQQKDHNMW-FIDHTVIDRPELS 491
Query: 260 EWMGNFREIRNVAKYAARLGQSFSSSKET-LSVHMDEIEIIPDVKIEIGKTKYVFSDGIG 318
WMG +E + VAK+AARLG FS+S+ L V + ++ ++ + + F+DG G
Sbjct: 492 RWMGQVKE-QVVAKHAARLGLPFSASRAVALKVTVSDLA-------DVFRNDHCFTDGCG 543
Query: 319 KVSAEFARKVASKCGLK---DNPPSAFQIRYGGYKGVVAADP--TSSKKLSLRDSMRKYE 373
+ R+ A K PSA Q R GG KGV+A P + ++ +R S K+E
Sbjct: 544 VAGIDVMRQAARSMNNKRKTGEAPSALQFRLGGAKGVLAYWPGMAGNDEILMRPSQTKFE 603
Query: 374 SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD-----AILTDP 428
S L +L+V+ +KYQ FLNRQ I+++S G+ D +FE+ EA + ++ A+L D
Sbjct: 604 SRLKELNVVRIAKYQAAFLNRQFINIMSACGVPDALFEQLFVEATQAIEGLPDRAVLRDL 663
Query: 429 LKAQEALELMSPGENTNI-LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 487
K +L+ + T + +++ G+ + P + + + A L +L+ + R+ +
Sbjct: 664 TKD----DLVLFQQYTEFPMVQVIDAGFARN--PMIQDLARLVEARALQDLKWRARVKLD 717
Query: 488 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNP 547
G ++G DET L G+VFVQ + + + + +V G VVV + P
Sbjct: 718 MGVYLIGVADETGLLKEGEVFVQ---------------YQVTENDEPVVVTGAVVVCRAP 762
Query: 548 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPN 584
LHPGDVR +AV+ P L H+ + VVF KG RP PN
Sbjct: 763 ALHPGDVRTARAVDHPQLRHLKNVVVFSIKGARPLPN 799
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 18/128 (14%)
Query: 679 VDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFT 738
+DF KT + E+ P +++PDFM K TY+S+ V+G LFR V+ + +
Sbjct: 820 LDFAKTELTTELRP----EKWPDFMGK----TYKSKKVLGVLFRRVQ------ADPKFEP 865
Query: 739 KEVARRSYDPDMEVDG---FEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMK 795
++ R +YDP+ + G + D + K Y+ + M + TE EI++G +
Sbjct: 866 SDIRRSAYDPEHWLWGHPQYHDIYTRLMAVKAGYECDMHYAMRRFS-ATELEIVSGIVTY 924
Query: 796 MSKSFTKR 803
+ T R
Sbjct: 925 HKQRKTSR 932
>gi|4138610|emb|CAA09895.1| RNA-directed RNA polymerase [Triticum aestivum]
Length = 107
Score = 178 bits (452), Expect = 9e-42, Method: Composition-based stats.
Identities = 83/107 (77%), Positives = 90/107 (84%)
Query: 581 PHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYI 640
PHPNECSGSDLDGDIYFV WD +LIP + PMDYTPA + LDHDV IE+V EYFTNYI
Sbjct: 1 PHPNECSGSDLDGDIYFVSWDPDLIPTRMVAPMDYTPAPTETLDHDVMIEEVHEYFTNYI 60
Query: 641 VNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVP 687
VN+SLGIIANAH VFADRE KA S PC++LAE FSIAVDFPKTGVP
Sbjct: 61 VNESLGIIANAHVVFADREILKAESTPCIKLAELFSIAVDFPKTGVP 107
>gi|299740231|ref|XP_001838952.2| hypothetical protein CC1G_05505 [Coprinopsis cinerea okayama7#130]
gi|298404148|gb|EAU82883.2| hypothetical protein CC1G_05505 [Coprinopsis cinerea okayama7#130]
Length = 1214
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 196/731 (26%), Positives = 304/731 (41%), Gaps = 146/731 (19%)
Query: 116 TDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDID 175
D ++ K P D L H V TPSR GP NR++R +R D
Sbjct: 323 ADVFKDLKKKSFKAHPPRQDQDSKLFECHHVTCTPSRFILVGPNPTGFNRIIRKYRDYTD 382
Query: 176 NFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFS 235
+F+R+ F DED R S D + T + TRI L+ GI I R FEFLA+S
Sbjct: 383 HFIRVDFRDEDGQYF-------RSSFEVDAS-TLVKTRIGGVLKGGITIAGRHFEFLAYS 434
Query: 236 SSQLRESSAWM-----FASRYG----LTAAEIREWM-----GNFREIRNVAKYAARLGQS 281
SS ++ S W F R G +TA IRE + N + +R +KYAAR+ +
Sbjct: 435 SSSMKVHSTWFLNPFEFKDRTGQRIRVTAQRIREDIIPDIPANVQLMRTPSKYAARIALA 494
Query: 282 FSSSKETLSVHMDEIEII---PDVKIEIGKTKY--------------------------- 311
F++S+ + E + PD+ + K
Sbjct: 495 FTTSESVDGARLKRDEWVGPFPDIYPAVSHVKVRREEEQEEEGEGESDTDEEESADEYDP 554
Query: 312 --------VFSDGIGKVSAEFARKV----ASKCGLKDNP---PSAFQIRYGGYKGVVAAD 356
F+DG+G +S E ++ K GL+ +P PSA+ +R GYKGVVA D
Sbjct: 555 QFKMVKLPPFTDGVGSISKELNDRIWKEYYEKRGLEVHPNFYPSAWMLRMLGYKGVVAVD 614
Query: 357 PTSSK--KLSLRDSMRKYESELTKLDVLA---------WSKYQPCFLNR-------QLIS 398
P L LR SM K+ES L + + K C+LNR L
Sbjct: 615 PEMEGPIHLRLRKSMHKFESLEDDLSQHSEVRIEIAEIYDKPGLCYLNRFYLPFFPHLHR 674
Query: 399 LLST-------LGIWD------EIFEKKQREAVRQ---LDAILTDPLKAQEALELMSPGE 442
LL T + ++D E+FE+ QR AV +DA + + + L +P +
Sbjct: 675 LLITPVLFRPLVMMFDLHDRPLEVFEELQRMAVADAMTIDASIDQFSRLMQMHGLGNPFK 734
Query: 443 NTNILKELLICGYKPDAEPFLSMMLQTFR----ASKLLELRTKTRIFIPNGRSMMGCLDE 498
T +L+ + G + +S + + R + + +R + RI +P ++G DE
Sbjct: 735 ITYLLEHVEALGLSLEELDQVSPLWKALRDVAFKTVMAGIRYEARIPVPKSWVLVGVADE 794
Query: 499 TRTLNYGQVFVQISGAGYRQLH--GESSLFSSSRSRQRF---IVQGLVVVAKNPCLHPGD 553
GQ GY ++ E+ +F + Q ++G VV +NP + PGD
Sbjct: 795 GPAYK-GQ-------PGYENVYCLPENCIFVCIQEDQDSEPEWLEGDCVVTRNPVVRPGD 846
Query: 554 VRVLKAVNVPA------LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 607
++ ++A+ P + + VVF +G R P+ +G DLDGD Y V + L+
Sbjct: 847 IQKVRAIGKPPRGVKCLFRDLKNVVVFSSQGRRSLPSCLAGGDLDGDKYAVIQYEGLLTE 906
Query: 608 QQDPPMDYTPAQSMQLD---HDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKAR 664
D A+ + V+ ED+ ++F Y+ D L F ++ +
Sbjct: 907 TYRREADPDEAKDSKFKDKARKVKPEDICDFFVQYVNRDVL-------DPFNEKGYNQQG 959
Query: 665 SEPCLQLAEKFSIAVDFPKTGVPAEIP-PHLYVKEYPDFMEKP-----------DKPTYE 712
+ C LA+ S AVD+PK G+P ++ P + P KP D Y+
Sbjct: 960 DDECSILAKLCSQAVDYPKKGIPIDLDNPEIKRILRPKITHKPDWDRDGSSDMVDTIYYK 1019
Query: 713 SQNVIGKLFRA 723
S V+G L+R+
Sbjct: 1020 SSRVLGHLYRS 1030
>gi|395327643|gb|EJF60041.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 734
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 144/501 (28%), Positives = 228/501 (45%), Gaps = 62/501 (12%)
Query: 221 GILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREI---RNVAKYAAR 277
GI + FL ++ SQ++ F G T + E G+ + KYAAR
Sbjct: 68 GIEHNGTVYRFLGYTESQVKAGKLMFFHEGEGWTVERMLESFGDLPGVYLKSGYGKYAAR 127
Query: 278 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 337
LG SFSS+ ++L + ++ IPD+ G + SDG G + FA A C +
Sbjct: 128 LGLSFSSTVQSLDIPLECAIEIPDLTAPDGS---LHSDGCGMIRDSFA---AQLCARHNL 181
Query: 338 PP--SAFQIRYGGYKGVVAADP---------TSSKK------LSLRDSMRKYESELTKLD 380
PP + FQ+R GG KG++ P T S+ ++ R SM KY T L+
Sbjct: 182 PPDTTVFQVRRGGIKGLLVRYPDNEFDVRCRTHSRTRGGHYMIAYRPSMFKYAGGPTCLE 241
Query: 381 VLAW-SKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL--EL 437
+ S LN Q ++LL TLG+ IF++ + + + +ILTD KA + + EL
Sbjct: 242 LNNHNSPSASARLNVQFMALLLTLGVPFAIFQRLVLDQLDLIGSILTDREKALQYVKGEL 301
Query: 438 MSPGENTNILKEL--LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGC 495
+ E+ + + L ++ + +EP++ L+TF+ + + LR K + IP+ + G
Sbjct: 302 DAAAED-DFAQGLYAMLLARQDLSEPYVRHKLETFQRKQYITLRNKMSLRIPDSAYLFGV 360
Query: 496 LDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR 555
+DE L +V V + +R +V+ V+V +NP +PGD R
Sbjct: 361 VDEAGVLAPNEVHVNLP------------------NRSGVLVRD-VIVGRNPSYYPGDFR 401
Query: 556 VLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDY 615
L+AV+ P+L H +C+VF P+ +G DLDGD+YFVCWD LIPP++ PP
Sbjct: 402 KLRAVDHPSLRHHRNCIVFSSNAAHSIPDTIAGGDLDGDMYFVCWDPCLIPPREAPPFSR 461
Query: 616 TPAQSMQLDHDVQIEDVEEYFTN-----------YIVNDSLGIIANAHTVFADREPRKAR 664
+ + +N + LG++A T + P AR
Sbjct: 462 PQSATAAAQAGTAPASATRQLSNMPKAAIDTFMQLKFSRLLGMMAKEWTRQVELTPDLAR 521
Query: 665 SEPCLQLAEKFSIAVDFPKTG 685
S C +L A+D K+G
Sbjct: 522 SAYCQELVPLIESALDLMKSG 542
>gi|400596582|gb|EJP64353.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 590
Score = 170 bits (431), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 114/366 (31%), Positives = 186/366 (50%), Gaps = 40/366 (10%)
Query: 50 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 109
I L + + +++ + V G + +D+ F + P + +E+ +D+ L++
Sbjct: 218 IYLDFAVRYRLEVCVTRGYLREHAIDAEFLEKLAALDVPKASQLLEYLVDEEIQLED--- 274
Query: 110 EPSRWLTD-QYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLR 168
P + D ++R R P ++ L + +TP+ + P + SNRV+R
Sbjct: 275 -PLQLFEDARFRYAPIKRKIPYYCSLVL--------KANITPTSLKLNLPNVESSNRVMR 325
Query: 169 HFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTR-----IYTRILSTLRNGIL 223
+ D FLR+ F+ E + + I + R ++ R+L L GI
Sbjct: 326 KYNNLHDRFLRVQFLSE--------------TESNRIAKDRYNNDDVWKRLLRALHKGIR 371
Query: 224 IGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFS 283
IG+R +EFLAF +SQLRE S F ++ +IR+W+GNF IRNVAK+ AR+GQ FS
Sbjct: 372 IGERTYEFLAFGNSQLREGSVTFFCPTAHVSCDDIRKWLGNFDHIRNVAKFGARIGQCFS 431
Query: 284 SSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD-NPPSAF 342
+++E V + I I D++ + G+ F+DG+G +SA A+ V + L PSAF
Sbjct: 432 TTREVRGVRVPTIRHIDDIEAK-GE---CFTDGVGIISALLAQLVVDELELDIVGNPSAF 487
Query: 343 QIRYGGYKGVVAADPTSSKK---LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISL 399
Q R GG KGV+A P K + LR S K+ +E L+++ +K LNRQ+I++
Sbjct: 488 QFRMGGAKGVLAVWPREYAKHMEVCLRKSQIKFSTEANTLEIIKCAKTSTATLNRQIITI 547
Query: 400 LSTLGI 405
L LG+
Sbjct: 548 LEHLGV 553
>gi|405952888|gb|EKC20645.1| Putative RNA-dependent RNA polymerase SHL2 [Crassostrea gigas]
Length = 1226
Score = 169 bits (427), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 175/306 (57%), Gaps = 25/306 (8%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
V R+ +TP++ F E NR+LR + D F+R+ + DED +K+++ +
Sbjct: 930 VGRMILTPTKTVFLPKEPVFQNRILREYGPDF--FIRVVYRDEDFEKMNTV----QSCLL 983
Query: 203 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM 262
D+ + + L++G I +R +EFL S+SQLRE S W F +T+ IR
Sbjct: 984 DDVLKI-----MKQFLKDGFRIRNRHYEFLGCSNSQLREHSFWFFHPHDDITSESIRNNS 1038
Query: 263 GNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSA 322
G F + R VA Y +R G FSS++ T+ V DE +I D ++ K +Y F+DGIG++S
Sbjct: 1039 GEFSKDRCVASYVSRFGLCFSSTRRTVDV--DESCLIYD--DDVKKDEYCFTDGIGRIST 1094
Query: 323 EFARKVASKCGLKDNP-PSAFQIRYGGYKGVVAADPT---SSKKLSLRDSMRKYESELTK 378
+ A+KVA++ L +P PSAFQIR+GG KGVVA DPT + L +R SM K+ES+
Sbjct: 1095 KLAKKVAAE--LHISPIPSAFQIRFGGCKGVVAQDPTLGDDADVLVIRKSMIKFESKSNN 1152
Query: 379 LDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL-DAILTDP---LKAQEA 434
L++L ++ LNRQ+I+LLS LGI DE+F Q + + + D +L D L E
Sbjct: 1153 LEILGETRPGRLHLNRQVITLLSGLGIPDEVFLGLQEKMLLDIADMLLYDKVALLALSEM 1212
Query: 435 LELMSP 440
+E + P
Sbjct: 1213 VEWLEP 1218
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 119/216 (55%), Gaps = 16/216 (7%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
V R+ +TP+R F E NR++R + D F+R+ F DED +KI + S A
Sbjct: 371 VARMVLTPTRSLFLPKEPMFQNRIVREYGEDF--FIRVVFRDEDFEKISTVQ-----SDA 423
Query: 203 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM 262
+ I R+ + +G I R +EFL S+SQLRE S W F R +T+ IR
Sbjct: 424 VE----NILERMKTFFEDGFQIQTRDYEFLGCSNSQLREHSFWFFHPRDDITSENIRNSS 479
Query: 263 GNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSA 322
G R VA Y +R G FSS+K+T+ V ++ DV+ +Y F+DGIG++S
Sbjct: 480 GELSTERCVASYVSRFGLCFSSTKKTVDVDKGCVQYTDDVQ----NDEYCFTDGIGRIST 535
Query: 323 EFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT 358
+ A KV+++ + PSAFQIR+GG KGVVA DPT
Sbjct: 536 KLAEKVSNELNISP-VPSAFQIRFGGCKGVVAQDPT 570
>gi|401885409|gb|EJT49528.1| hypothetical protein A1Q1_01432 [Trichosporon asahii var. asahii
CBS 2479]
Length = 1000
Score = 169 bits (427), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 135/456 (29%), Positives = 223/456 (48%), Gaps = 54/456 (11%)
Query: 140 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 199
+V + V VTP+RV P+ SN V R + +D +R+ F DE ++++ +
Sbjct: 376 IVMIRTVTVTPTRVLVGPPQPETSNSVTRRYSDKLDAIIRVHFTDEG-ERLNVQKFTKPA 434
Query: 200 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 259
A + R+ L+ GI + ++ +A S SQ ++ + W F + E+
Sbjct: 435 DDAC--PEKGLMARVRRALQYGIEVAGCRYYPVASSGSQQKDHNMW-FIDHTVIDRPELS 491
Query: 260 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 319
WMG +E + VAK+AARLG + + D+ ++ + + F+DG G
Sbjct: 492 RWMGQVKE-QVVAKHAARLG----------------LVTVSDLA-DVFRNGHCFTDGCGV 533
Query: 320 VSAEFARKVASKCGLK---DNPPSAFQIRYGGYKGVVAADP--TSSKKLSLRDSMRKYES 374
+ R+ A K PSA Q R GG KGV+A P + ++ +R S K+ES
Sbjct: 534 AGIDVMRQAARSMNNKRKTGEAPSALQFRLGGAKGVLAYWPGMAGNDEILMRPSQTKFES 593
Query: 375 ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD-----AILTDPL 429
L +L+V+ +KYQ FLNRQ I+++S G+ D +FE+ EA + ++ A+L D
Sbjct: 594 RLKELNVVRIAKYQSAFLNRQFINIMSACGVPDALFEQLFVEATQAIEGLPERAVLRDLT 653
Query: 430 KAQEALELMSPGENTNI-LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN 488
K +L+ + T + +++ G+ + P + + + A L +L+ + R+ +
Sbjct: 654 KD----DLVLFQQYTEFPMVQVIDAGFARN--PMIQDLARLVEARALQDLKWRARVKLDM 707
Query: 489 GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 548
G ++G DET L G+VFVQ + + + + +V G VVV + P
Sbjct: 708 GVYLIGVADETGLLKEGEVFVQ---------------YQVTENDEPVVVTGAVVVCRAPA 752
Query: 549 LHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPN 584
LHPGDVR +AV+ P L H+ + VVF KG RP PN
Sbjct: 753 LHPGDVRTARAVDHPQLRHLKNVVVFSIKGARPLPN 788
Score = 43.1 bits (100), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 18/128 (14%)
Query: 679 VDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFT 738
VDF KT + E+ P +++PDFM K TY+S+ V+G LFR V+ + +
Sbjct: 790 VDFAKTELTTELRP----EKWPDFMGK----TYKSKKVLGVLFRRVQ------ADPKFEP 835
Query: 739 KEVARRSYDPDMEVDG---FEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMK 795
++ R +YDP+ + G + D + K Y+ + M + TE EI++G +
Sbjct: 836 SDIRRSAYDPEHWLWGHPQYHDIYTRLMAVKAGYECDMHYAMRRFS-ATELEIVSGIVTY 894
Query: 796 MSKSFTKR 803
+ T R
Sbjct: 895 HKQRKTSR 902
>gi|769816|emb|CAA83245.1| unnamed protein product [Phanerochaete chrysosporium]
Length = 953
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 146/489 (29%), Positives = 229/489 (46%), Gaps = 62/489 (12%)
Query: 146 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI 205
V VTP+ GP SNRV+R + D F+RI+F+DE TDL R D
Sbjct: 434 VTVTPTTHRLDGPYPERSNRVMRMYPDYHDCFVRINFVDE-------TDLQFRFDREVD- 485
Query: 206 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAW-----MFASRYGLTAAEIRE 260
R I R+ L NGI I R FEFLA+S S L+E + W M + + A I
Sbjct: 486 GRAFIKRRVGEILTNGIDIAGRHFEFLAYSQSALKEHAVWFVKEFMLPNGTIVNARTIIA 545
Query: 261 WMGNFREIRNV----AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDG 316
+G+F + A+Y AR+ Q+F+++ ++ V DE+ I D++ G + F+ G
Sbjct: 546 GLGDFTRDHQLIYCPARYGARISQAFTATDSSVKVQPDEVFEIDDIEGPTG--TWCFTSG 603
Query: 317 IGKVSAEFARKVASKCGLKDNP------PSAFQIRYGGYKGVVAADPT-SSKKLSLRDSM 369
+G +S + AR + K + P A QIR+ G KG+++ D T + + LR SM
Sbjct: 604 VGTMSVQLARDIWKKLAARRGGSRWKTYPRALQIRFRGSKGMLSVDHTLQGRAICLRPSM 663
Query: 370 RKYES--ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT 426
K+E+ LT +++ A+++ P +LNR LI ++ LG+ E+FE+ Q AV + +
Sbjct: 664 IKFEAPESLTDIEIARAFNRPGPFYLNRPLIMIMEHLGVPYEVFEELQDMAVEEAQESVE 723
Query: 427 DPLKAQEALELMSPGEN---TNILKELLICGYKP-DAEPFLSMMLQTFRASKLLELRTKT 482
KA LE G + T+I L G P + F M+ L EL+
Sbjct: 724 SLEKAARLLETFGLGASYRLTSIFLSLHKLGVGPLTGDEFWQKMMDFAINHVLRELKHHA 783
Query: 483 RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVV 542
RI +PN +++G D L +VF G Y L G ++ + G +
Sbjct: 784 RIPVPNAWNLVGVADVHGYLEQDEVF----GCIY-PLDGTGPIY----------LDGPTL 828
Query: 543 VAKNPCLHPGDVRVLKAVNVP----ALHH--MVDCVVFPQKGMRPHPNECSGSDLDGDIY 596
V ++P +HPGDV+V + P H + + +VF KG S ++ D ++
Sbjct: 829 VTRSPTIHPGDVQVAHGIGRPPRGSPFEHESLRNTLVFSTKG--------SSANFDRLVF 880
Query: 597 FVCWDDELI 605
F D++
Sbjct: 881 FSIHPDDVF 889
>gi|218188371|gb|EEC70798.1| hypothetical protein OsI_02249 [Oryza sativa Indica Group]
Length = 307
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/286 (37%), Positives = 158/286 (55%), Gaps = 23/286 (8%)
Query: 613 MDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLA 672
MDY+P ++ QL V D+ ++F +++++LG I NAH V AD A E C+ LA
Sbjct: 1 MDYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLA 60
Query: 673 EKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTS 732
E + AVDFPKTG A +PPHL K YPDFM K D +Y+S+ ++G+L+R++++ S
Sbjct: 61 ELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQE----AS 116
Query: 733 CIRLFTKEVARRS---YDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEIL 789
+ ++EV + YD D+EV G D + A K +YD +L L+ Y ++TEAE++
Sbjct: 117 NGDVVSQEVCTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELV 176
Query: 790 TGSIMKMSKSFTKRRD--AEAIGMAVRALRKEARAWFKEKSGSDTEDDA-------YAKA 840
TG I + K+ +K++ + + A ALRKE ++ F+ + E D KA
Sbjct: 177 TGHITSLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIDDDEKNLLYEMKA 236
Query: 841 SAWYHVTYHPDYWGCYNQGM------NRDHFLSFPWCVYDRLVEIK 880
SAWY VTYHP W ++G+ LSF W D L IK
Sbjct: 237 SAWYQVTYHPK-WVEKSRGILGPDGEEIPASLSFAWIPVDYLARIK 281
>gi|302682736|ref|XP_003031049.1| hypothetical protein SCHCODRAFT_57049 [Schizophyllum commune H4-8]
gi|300104741|gb|EFI96146.1| hypothetical protein SCHCODRAFT_57049 [Schizophyllum commune H4-8]
Length = 739
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 140/460 (30%), Positives = 226/460 (49%), Gaps = 54/460 (11%)
Query: 148 VTPSRVYFCGPEINVSNRVLRHFR-RDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDIT 206
+TP+R+ GP SNRV+R F + D+FLR+SF +E T L R D T
Sbjct: 298 ITPTRIILQGPYPERSNRVIRMFDVQHHDSFLRVSFTEE-------TKLQYRFDREVD-T 349
Query: 207 RTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS-RYG---LTAAEIREWM 262
+ + +R+ S L+NG++I R+FEFLA+S S L+E + + R G + AA + +
Sbjct: 350 ASFVRSRVGSILKNGLVIAGREFEFLAYSQSALKEHTVYFVKPFRVGDTEVNAASVIASI 409
Query: 263 GNFREIRNV---AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 319
GNF + + A+YAARL Q+F+++ ++ V+ E II D+ G Y F+DG+G
Sbjct: 410 GNFEKSSDRLCPARYAARLSQAFTATDASIVVNPAETHIISDISTPDG--MYHFTDGVGT 467
Query: 320 VSAEFA-------RKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRK 371
+S E A + + P+AFQIR+ G KG+++ D T + + LRDSM K
Sbjct: 468 MSREMAVDAYTEVNRYRKRAMNGRGIPAAFQIRFMGSKGMLSVDHTLQGRVVCLRDSMIK 527
Query: 372 YESELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 429
++ + +A +P +LNR LI LL LG+ E F + Q AV+ +
Sbjct: 528 FDCPNNRNLEIARVFDRPAKYYLNRPLIMLLEGLGVPYETFLQHQDAAVQDAYSSTESLT 587
Query: 430 KAQEALELMSPGENTNILKELL----ICGYKPDAE-PFLSMMLQTFRASKLLELRTKTRI 484
KA LE + G + + LL +C + + F S ML+ L EL+ RI
Sbjct: 588 KAARMLEALGLGTSFRLPSLLLNLVKLCNIENLGDNKFYSRMLEFAIHHVLRELKNHARI 647
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 544
IP +++G D L ++F I + S + ++G +++
Sbjct: 648 PIPGAYTLVGVADVHGYLKEWEIFACI---------------KAHDSDEVIYLEGDILIP 692
Query: 545 KNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFPQKG 578
++P +HPGDV++ +A+ P A + + VVF +G
Sbjct: 693 RSPSIHPGDVQIARAIGRPRPGSPFAKEPLANTVVFSVRG 732
>gi|241083173|ref|XP_002409051.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215492624|gb|EEC02265.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 597
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 125/364 (34%), Positives = 192/364 (52%), Gaps = 48/364 (13%)
Query: 115 LTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDI 174
L Q+RK +S P+ G + R+ VTPSRV+F P + NRVLR F +
Sbjct: 261 LFHQFRKVHSSDIVPA--------GSYLIRRLFVTPSRVFFLPPLLFRENRVLRRF--NP 310
Query: 175 DNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILST-LRNGILIGDRKFEFLA 233
+ +R++F D++L ++ + + R R + I+ LR G+ +G+R+F+FLA
Sbjct: 311 EYAMRVTFRDDNLQQLSRSLMFHR-------RRDEMVDAIVGKFLREGVAVGNRRFKFLA 363
Query: 234 FSSSQLRESSAWMFAS-RYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVH 292
S SQLR+ AW++A G T IR WMG+F I N+AK AR+GQ FSS+ ETL V
Sbjct: 364 TSCSQLRDHGAWLYAEDSLGNTVDLIRTWMGDFSGIPNIAKKMARMGQCFSSTMETLKVP 423
Query: 293 M--DEIEIIPDV---KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYG 347
+ D +++ PD+ + + ++ FSDGIG +SA K IRY
Sbjct: 424 LKGDIVQMTPDIVGGRHPVSAKEFSFSDGIGMISASLMEK----------------IRYA 467
Query: 348 GYKGVVAADPT-SSKKLSLRDSMRKYE-SELTKLDVLAWSKYQPCFLNRQLISLLSTLGI 405
GYKG++ +P KL LR SMRK++ S L+++ S + LNR LI++L LG+
Sbjct: 468 GYKGMLCLNPCLQGDKLVLRPSMRKFDCSSSDNLELVKVSAPRLVCLNRPLITILEQLGV 527
Query: 406 WDEIFEKKQREAVRQLDAILTDPLKAQ-EALELMSPGENTNI-LKELLICGYKPDAEPFL 463
+F Q+ V Q TD L + AL+++S T++ EL+ G+ +PF+
Sbjct: 528 PSRVFLCLQQSTVLQ----CTDALVCETTALQVLSGFGGTSLPFAELVRGGFCLTRDPFV 583
Query: 464 SMML 467
+L
Sbjct: 584 RSLL 587
>gi|449550168|gb|EMD41133.1| hypothetical protein CERSUDRAFT_111700, partial [Ceriporiopsis
subvermispora B]
Length = 595
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 139/507 (27%), Positives = 223/507 (43%), Gaps = 61/507 (12%)
Query: 213 RILST-LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREI--- 268
RIL + G+ + ++ F F+ + ++E F T ++E G+ E+
Sbjct: 59 RILKKWVHEGVTVASARYAFFGFTENHVKEGRVICFREDESWTVRHVKEQFGDLDEVYQK 118
Query: 269 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV 328
KYAARLG SFSS+ ++L V +E +PD++ G + +DG G + FA ++
Sbjct: 119 HGYGKYAARLGLSFSSTVQSLDVAPEEALEVPDLRAPDGS---LHTDGCGMICDSFAAEI 175
Query: 329 ASKCGLKDNPP--SAFQIRYGGYKGVVAADPTS----------------SKKLSLRDSMR 370
C + P + FQ+R GG KG++ P S K++ R SM
Sbjct: 176 ---CHAHELPADTTVFQVRRGGIKGLLVRYPDDKFAELCAKHRGIPTPPSIKMAYRPSML 232
Query: 371 KYESELTKLDVLAWSKY-QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 429
KY T L++ S+ LN Q I +L TLGI E FEK +E + + I D
Sbjct: 233 KYSGGPTALELNDCSRCPTSARLNAQFIIMLLTLGINIETFEKMLKEHLDIIGCITHDRD 292
Query: 430 KAQEALELMSPGENTNILKE---LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 486
A L+ + + + L+ Y +EP++ L+ F+A + L K + +
Sbjct: 293 VALRYLKGELDASDHDTFGQDVYALLLAYHDLSEPYVEWKLKQFQALQYKSLYKKLNLRV 352
Query: 487 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 546
+ G +DE L +VF+ + G + +V G V+VA+N
Sbjct: 353 EESCYVYGVVDEDGILEGDEVFINLPG-------------------RTGVVLGNVLVARN 393
Query: 547 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIP 606
P PGD R L+AV+ P L H C+VF +K P+ + DLDGD YFV WD LIP
Sbjct: 394 PSYSPGDFRKLRAVHDPRLKHHKHCIVFSRKASHSIPDSMASGDLDGDEYFVTWDPTLIP 453
Query: 607 PQQDPPMDYT-PAQS-------MQLDHDVQIEDVE-EYFTNYIVNDSLGIIANAHTVFAD 657
P PA + ++ +E+ + F + LG +AN+ ++ A+
Sbjct: 454 SHMATPHQRALPASATRASVSPTRITRQCTLEEAAIDTFIENAFSRLLGKMANSWSILAE 513
Query: 658 REPRKAR-SEPCLQLAEKFSIAVDFPK 683
P+ A + P + L E + + K
Sbjct: 514 ATPQLANFTLPLVHLLESAHLGGNVAK 540
>gi|389743114|gb|EIM84299.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1120
Score = 163 bits (413), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 141/507 (27%), Positives = 228/507 (44%), Gaps = 52/507 (10%)
Query: 207 RTRIYTRILS-TLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW--MG 263
R+R +I+ + GI ++ FL ++ SQL+ + MF T +R + +
Sbjct: 82 RSRDIPKIMEHVVHEGIQQDGHRYTFLGYTESQLKATQFMMFEGDKAATQKLLRTFGKLD 141
Query: 264 NFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAE 323
+ KYAARLG SFSS+ L + IPD+ + + + SDG G +
Sbjct: 142 AVYQKSGYGKYAARLGLSFSSTAVGLDAPHSRVTEIPDL---VARDGTLMSDGCGVIRDS 198
Query: 324 FARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS---------SKKLSLRDSMRKYES 374
+ + G++ + QIR+ G+KG++ P + +++R SM+KY+
Sbjct: 199 VLAIICANRGIRRDT-HCIQIRWNGHKGMLVGYPDAFCTDVLHMGENWIAVRPSMKKYDG 257
Query: 375 ELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 433
LT L++ A S LN+ I LL T GI + E + +LD +TD KA E
Sbjct: 258 RLTSLEINAVSHPAGSARLNKMYILLLLTAGIPAATIHELLNEQLEKLDLFMTDRDKAIE 317
Query: 434 ALE------LMSPGENTNI-LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 486
LE L + GE N L E L+ + +EP++ ++ ++ + LR K I +
Sbjct: 318 ILEGTDSAQLDADGEGFNQELFEGLLASHDL-SEPYVKWLMLKYQKLRYRRLREKICIDV 376
Query: 487 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 546
+ G +DE+RTL +V++ + + ++ G VVV +
Sbjct: 377 KLSWLLFGIVDESRTLKPDEVYIHMP-------------------HRDGVIIGWVVVCRT 417
Query: 547 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHP--NECSGSDLDGDIYFVCWDDEL 604
P PGD+RV KAV+ P L H +C+VF P + SG DLDGD ++VC D L
Sbjct: 418 PAYAPGDMRVFKAVSKPELLHHTNCIVFSGHESCPRSVTDMISGGDLDGDKFWVCSDPRL 477
Query: 605 IPPQQD---PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDS---LGIIANAHTVFADR 658
+P + + P +PA ++ + + + +++ LG I+ T
Sbjct: 478 VPKRSNIFPPSQRASPAAAVSSRKNSLKDMPQASIDTFVIQHGTSLLGQISRKWTAHTAN 537
Query: 659 EPRKARSEPCLQLAEKFSIAVDFPKTG 685
P A SE +LA F AVD KTG
Sbjct: 538 HPDLAASEESRKLASCFEAAVDLTKTG 564
>gi|402468934|gb|EJW04010.1| hypothetical protein EDEG_01704 [Edhazardia aedis USNM 41457]
Length = 2457
Score = 162 bits (411), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 114/194 (58%), Gaps = 5/194 (2%)
Query: 532 RQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDL 591
R I+ G +VVAKNPCLHPGDVR+ +AV L H+ D +VF KG RP N CSGSDL
Sbjct: 32 RDTNILFGSIVVAKNPCLHPGDVRIAEAVYKKELEHLQDVIVFSGKGSRPLFNMCSGSDL 91
Query: 592 DGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANA 651
DGD Y V WD LIP + P Y ++ + V + DV ++ Y+ D LG+IA A
Sbjct: 92 DGDQYAVIWDKRLIPTKTVDPDTYDNT-TILMKEMVTLNDVINFYVRYMKEDELGLIATA 150
Query: 652 HTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTY 711
H +DR + C+ LA+ F+ VDFPKTG A +P L YPDFM++ + Y
Sbjct: 151 HLATSDR--LSIMDKECITLAKLFNKGVDFPKTGYVARLPDDLLPSSYPDFMQQNSQ--Y 206
Query: 712 ESQNVIGKLFRAVK 725
+S ++GK++R K
Sbjct: 207 KSDKILGKMYRRCK 220
>gi|406867650|gb|EKD20688.1| RNA-dependent RNA polymerase 1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 901
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 152/567 (26%), Positives = 240/567 (42%), Gaps = 128/567 (22%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKI--HSTDLSPRGS 200
+HR +VT + + GP++ +NR LR ++ D F+R+SF ED + + HS
Sbjct: 371 IHRARVTATSITLSGPQLESNNRTLRKYKEFHDYFMRVSFGAEDGEPLMYHS-------- 422
Query: 201 SATDITRTRIY-TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAA--- 256
++ +Y R G+ IG R F FL F S LRE S W+ A L +
Sbjct: 423 ---KVSNYHVYHGRFQEIPDRGVKIGGRVFSFLGFPQSSLRERSYWLVAPFGSLGSLLLD 479
Query: 257 -EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSD 315
+I +GNF IR+ AK AAR+GQ+FS ++ +++ + + D+K ++ YVFSD
Sbjct: 480 RDITGGLGNFTLIRSPAKCAARIGQAFSDTRSFMTIDPLIVRNMEDIK----RSGYVFSD 535
Query: 316 GIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYES 374
G G + A + G KG+++ D +L LRDSM K++
Sbjct: 536 GCGTI--------------------ALSLLCLGAKGMISLDSRLDGDQLCLRDSMIKFDG 575
Query: 375 ELTKLDVLAWS---KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA 431
T D+ + + P ++NR+ I + + E +E + L I P+ A
Sbjct: 576 S-TSNDIEIYDITYRPLPVYMNRKFIKI--------DHGEPATKE-ITSLRMITESPINA 625
Query: 432 QEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRS 491
L+ G+ S L +L+ + RI +P G
Sbjct: 626 SSFLKRQGVGD---------------------SFQFPELILRLLRKLKHEARIPVPRGWH 664
Query: 492 MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 551
+ G +DET +L G++F G + G ++ +S R +V+ + P L P
Sbjct: 665 LHGIMDETGSLKEGEIFC----VGVEE--GVKNVITSER----------LVITRAPALDP 708
Query: 552 GDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP 611
GDVR+ KAV PA ++ E G DLDGD ++V WDD+ +P +
Sbjct: 709 GDVRIAKAVMPPAESPLM---------------ELGGGDLDGDRFYVIWDDDALPENEFE 753
Query: 612 PMDYTPA----------QSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPR 661
+Y + LD + I+ + +V S II T
Sbjct: 754 AAEYPSLPRWILAALFNAKISLDSALIIKRTSGSVPSQLVTASQQIICRGGT-------- 805
Query: 662 KARSEPCLQLAEKFSIAVDFPKTGVPA 688
+E C A +AVDFPKTG+PA
Sbjct: 806 --DAEKCKTFAMLHGVAVDFPKTGIPA 830
>gi|443927204|gb|ELU45719.1| RNA-directed RNA polymerase [Rhizoctonia solani AG-1 IA]
Length = 1713
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 132/456 (28%), Positives = 213/456 (46%), Gaps = 59/456 (12%)
Query: 214 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAK 273
I L G+ I +++ F S+SQLR S W+ A+ E + + +I N+AK
Sbjct: 88 IQRALTKGLFINGQQYRFYHHSNSQLRSRSCWLRAASSDEELDRRIEKLCDVSKINNIAK 147
Query: 274 YAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCG 333
A R+G FS ++ ++ + IPD+ I + +FSDG G +S F + +A K
Sbjct: 148 RAKRIGLLFSGAEIDWDLNPALTKDIPDITI----AEELFSDGCGLISRRFMQLLAKKKK 203
Query: 334 LKDN----PPSAFQIRYGG-----------YKGVVAADP----TSSKKLSLRDSMRKYES 374
+ PS QIR +GV+A P + + RDSMRK ++
Sbjct: 204 IVHRGYRYTPSVIQIRAVCSFVSHNVTILIIQGVLAIHPQLDQAAQHHVHFRDSMRKLKT 263
Query: 375 EL-TKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 432
V+ +SK YQ LN +I LLS LGI +E+ + KQ + +++ D
Sbjct: 264 GADNTFSVVDYSKPYQFARLNNDIIVLLSALGITNEMLKTKQDAYFKWIESANKD---MS 320
Query: 433 EALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLEL---------RTKTR 483
A+ +S ++ + + + G D E + + R +++ E+ + ++R
Sbjct: 321 SAMNFLSALGKDDLAERVFMDGL--DEEQVQAQI----RNAQVEEVNAFQKPETGKDRSR 374
Query: 484 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVV 543
IF+ R + G D L G+V V+I G ++L + ++V
Sbjct: 375 IFLLQSRFLFGVCDPYGLLEEGEVHVRI----MEPRKGATTLSNID-----------LMV 419
Query: 544 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
+NPCLHPGD+ L+AV+ L H+VDC+VF KG R P SG DLDGD + V WD +
Sbjct: 420 VRNPCLHPGDILKLRAVHHTGLDHLVDCIVFSGKGKRAAPAMSSGGDLDGDRFTVVWDPD 479
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNY 639
++P DY PA Q++ + +D+ +F NY
Sbjct: 480 IVPRTIAQSYDY-PAAKTQVNLRITRKDLATHFANY 514
>gi|393244916|gb|EJD52427.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 813
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 148/502 (29%), Positives = 227/502 (45%), Gaps = 54/502 (10%)
Query: 213 RILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREI---R 269
R+L +R+G+ G +F FL F+ SQL + F G T + E+ G +
Sbjct: 72 RLLELMRHGLETGGSRFSFLGFTESQLGAGALLFFEEGDGYTIDSMLEYFGELEPVFVKS 131
Query: 270 NVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVA 329
KYAARLG SFSS+K + ++ I D + + T V +DG G + AR++
Sbjct: 132 GYGKYAARLGLSFSSTKPVYELSPSDLISIDD-RFALDGT--VTTDGCGLIKDSLARQLC 188
Query: 330 SKCGLKDNPPSAFQIRYGGYKGVVAADP---------TSSKKLSLRDSMRKYES--ELTK 378
G+ N + FQ+R GG KGV+A P S ++ R SM KY ++ +
Sbjct: 189 ILLGIA-NTTAIFQVRIGGIKGVLARYPDDVFERLAQNSVAVIAYRPSMFKYRGGPQIVE 247
Query: 379 LDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA----QEA 434
L+ ++ ++ LN Q I LL TLG+ E+F++ + ++D I +D A + A
Sbjct: 248 LNKISKTRPDSARLNIQFILLLLTLGVGVEVFQQLLSIQLERIDNIFSDRKSAIAFLENA 307
Query: 435 LELMSPGENTNILKE----LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 490
++ T L + +L G+ +EP L L T R L L+ K +I + +
Sbjct: 308 YDVTLDSNATRSLYQDAFLMLHAGFDL-SEPQLQWSLNTLRTQMLKRLQDKLQIEVQDSA 366
Query: 491 SMMGCLDETRTLNYGQVFVQI--SGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 548
+ G DET +L +V+V + G G+ R+ VVV KNP
Sbjct: 367 MLFGVCDETNSLEEDEVYVNLPERGGGF-----------GGRT---------VVVMKNPA 406
Query: 549 LHPGDVRVLKAVNVPALHHM-VDCVVFPQKGM--RPHPNECSGSDLDGDIYFVCWDDELI 605
PGD+RV KAV+ P+L +C+VF R ++ SG DLDGD +FV WD LI
Sbjct: 407 YAPGDIRVFKAVDRPSLRICPTNCIVFASSARCGRSPADKMSGGDLDGDTFFVSWDSSLI 466
Query: 606 PPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDS--LGIIANAHTVFADREPRKA 663
P + P E T +++ LG ++N+ A+ A
Sbjct: 467 PSRVASPQPRPKPIPPLQPPPRGPILAEAAKTFIALHNKMLLGQMSNSWKETAENSADIA 526
Query: 664 RSEPCLQLAEKFSIAVDFPKTG 685
+ + CLQL A+D KTG
Sbjct: 527 QDKYCLQLVPMIEAALDITKTG 548
>gi|403358455|gb|EJY78878.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1079
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 148/586 (25%), Positives = 266/586 (45%), Gaps = 72/586 (12%)
Query: 163 SNRVLRHFRRDIDNFLRISFI--DEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRN 220
SN+V+R ++D FL+I F+ +++L+ ++ + +G I R + + + L
Sbjct: 259 SNQVIRRHFTNVDKFLKIKFLGGNQELELLNDQYMRIKGD--YQIRRNLVTNLLWNILGY 316
Query: 221 GILIGDRKFEFLAFSSSQLRESSAWMF--------------ASRYGLTAA----EIREWM 262
GI I ++ F+FL +S+SQL++ S W S YG+ A +E++
Sbjct: 317 GISINNKTFKFLGYSNSQLKDRSFWFLRQAVENDLKLNSAIMSMYGIVAIPSNLNKKEYL 376
Query: 263 GNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPD-VKIEIGKTK-YVFSDGIGKV 320
G E+ N ++ +++SS + + ++I++I D V+ + + + F+DG G +
Sbjct: 377 G---EVLNC---HGKVANNYTSSDFIIKLERNQIQVINDIVRHDYQDNRDFNFTDGNGLI 430
Query: 321 SAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELTKL 379
S + + + GLK+ S +Q+R GG KG + D KK+ LR SM K ++ +T L
Sbjct: 431 SQKLSNMINQHYGLKN--CSVYQVRIGGAKGTLTVDQRLKGKKVILRSSMIKLKNNITDL 488
Query: 380 DVLAWSKYQPCFLNRQLISLLSTLGIW-DEIFEKKQREAVRQLDAILT----------DP 428
+++ K + NRQ+I+L G+ +E FE ++ Q L+ D
Sbjct: 489 NIVQCGKAGLGYSNRQVIALFEHDGVHKEEFFELIKKNIQYQFFKQLSQGQAQSVSYYDL 548
Query: 429 LKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN 488
++ L + I K+ I Y +P ++ + + ++ K RI++ N
Sbjct: 549 AFLEQHLTHLVGAFKYFIRKKPEILRY----DPLFQSIVNQLKQEIMRQITEKGRIYMKN 604
Query: 489 GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 548
++G D L ++F+QI Y L + Q +++G VVV +NP
Sbjct: 605 SVVLLGVPDFLGILQENEIFLQI--PKYNDL---------EQGEQYQVIRGDVVVTRNPA 653
Query: 549 LHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQ 608
LHP D+R L AV+ P ++ + VVF +G P +G D DGD Y + W+ ++
Sbjct: 654 LHPNDIRKLVAVDRPEFRYLRNAVVFSTQGSIPPSTMMAGGDHDGDRYLIIWERSIVNNF 713
Query: 609 QDPPMDYT---PAQSMQLD-HDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKAR 664
+ Y P + M+ +++Q + + Y+ +D LG+I + H D
Sbjct: 714 LANQIRYKYFDPKRLMKKGRYNIQPQMIASSIVKYVRSDYLGLIDSMHLGLCDYLG--PN 771
Query: 665 SEPCLQLAEKFSIAVDFPKTGVPAEIPPHL-------YVKEYPDFM 703
+ L L AVD+ K G I L Y ++ P FM
Sbjct: 772 HDFTLYLEYLHRQAVDYSKHGKAPNIKQFLLERIRLNYDRKQPLFM 817
>gi|66736429|gb|AAY54273.1| RNA-dependent RNA polymerase [Caenorhabditis remanei]
Length = 200
Score = 159 bits (401), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 124/198 (62%), Gaps = 4/198 (2%)
Query: 489 GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 548
GRSM+G +DET L YGQ+FVQ + +L S++ + + +V G V++ KNPC
Sbjct: 6 GRSMLGIVDETGRLQYGQIFVQYTRNSNEKLPPRSNM-QHMKVQGSQVVTGTVLLTKNPC 64
Query: 549 LHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQ 608
+ GDVR+ +AV++P LHH+ D VVFPQ G RPHP+E +GSDLDGD Y V WD +L+ +
Sbjct: 65 IVTGDVRIFEAVDIPELHHLCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQQLLLDK 124
Query: 609 QDPPMDYT-PAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEP 667
+ P D+T + M D ++ + + E++ Y+ DS+G I+N H +D+ +R
Sbjct: 125 NEAPFDFTVEKKEMPYDREMIDQLMHEFYVKYLKLDSVGTISNNHLHNSDQYGLNSRV-- 182
Query: 668 CLQLAEKFSIAVDFPKTG 685
C+ LA+K AVDF K+G
Sbjct: 183 CMDLAKKNCQAVDFTKSG 200
>gi|409046080|gb|EKM55560.1| hypothetical protein PHACADRAFT_173707 [Phanerochaete carnosa
HHB-10118-sp]
Length = 876
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 133/471 (28%), Positives = 218/471 (46%), Gaps = 65/471 (13%)
Query: 148 VTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITR 207
VTPS V GP + NRV+R + R+ FLR+ F DE L R D R
Sbjct: 421 VTPSTVRLEGPFLEQCNRVIRKYARNTSCFLRVRFADE-------ARLQFRSEREVD-CR 472
Query: 208 TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS-------------RYGLT 254
I+ R + LR G++I R F FL ++ + L+E +AW S +T
Sbjct: 473 AFIHNRFGNVLRRGLVIAGRHFHFLGYTQASLKEHTAWFVRSFKQPAVTSDGTSCEETVT 532
Query: 255 AAEIREWMGNF-------REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIG 307
A I +G F I A+Y AR Q FSS+ ++++ +D+IE++ D+ G
Sbjct: 533 ADTIIAGLGVFDGILYDPELIMCPARYGARQAQCFSSTSASVTIDLDDIEVVEDIVDADG 592
Query: 308 KTKYVFSDGIGKVSAEFARKVASK-CGLKDNPPSA-----FQIRYGGYKGVVAADP-TSS 360
+ F+DG+G +S A ++ ++ C PPS FQIR G KG+V+ D
Sbjct: 593 ERS--FTDGVGTISPNLAAEIWTRLCAASGRPPSERGPRRFQIRIQGAKGMVSVDHLLQG 650
Query: 361 KKLSLRDSMRK-YESELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWD--EIFEKKQRE 416
+KL LR SM K Y ++ L++ A+ K +LNR L+ LL L I + + Q
Sbjct: 651 RKLCLRPSMIKFYAADSRTLEIADAFVKPSKFYLNRPLVMLLEELDILGGYDFLKFLQES 710
Query: 417 AVRQLDAILTDPLKAQEALELMSPGEN---TNILKELLICGYKPDAEPFLSMMLQTFRAS 473
V + +A + A + + + G +N+ +EL G + F +L R
Sbjct: 711 VVEKTEAAVQSLYAAADLFDDFNLGRTYDLSNVFRELHHMGIATLDDTFSQQVLCFGRHH 770
Query: 474 KLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ 533
L +L+ + RI +P+G +++G D L G++F A G+ ++
Sbjct: 771 VLRDLKYRARIPVPSGWNLVGVADIHGCLEEGEIF-----ACVIPYEGQEPIY------- 818
Query: 534 RFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFPQKG 578
+ G +++++P +H GDV+V++A+ P + + + VVF KG
Sbjct: 819 ---LHGPTLISRSPVIHRGDVQVVRAIGPPPPGSPFEIEPLHNSVVFSTKG 866
>gi|4768840|gb|AAD29638.1|AF117611_1 DosA protein [Dictyostelium discoideum]
Length = 1069
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 148/572 (25%), Positives = 249/572 (43%), Gaps = 104/572 (18%)
Query: 298 IIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV-VAAD 356
+IPD+ I K + F++G G + + + + ++ A+QIR GG KGV V +
Sbjct: 1 MIPDI---ISKGGHNFTEGCGFIGFKLVELINQQNNY-NSSTCAYQIRLGGSKGVLVLNE 56
Query: 357 PTSSKKLSLRDSMRKYESELTK---------LDVLAWSKYQPCFLNRQLISLLSTLGIWD 407
L +R SM K+E + L++++ S C LNRQ I+LLS G+ D
Sbjct: 57 NIDEMSLQIRPSMSKFELDYKSGQLDGGHKTLEIVSASTTSRCKLNRQAITLLSNAGVED 116
Query: 408 EIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL------ICGYKPDAEP 461
F + + Q L D N+ KELL I Y+ +
Sbjct: 117 STFLQMLEVELNQNAQTLVD----------------VNLSKELLGDFFQHITEYELFNDY 160
Query: 462 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG 521
++ +L SKL++++ K I + R+++G D + TL V++++ +L
Sbjct: 161 YIRSILLKLYKSKLIKIQDKCWIEVKESRNLLGVCDTSGTLPEDTVYIEV-----EELDP 215
Query: 522 ESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRP 581
+L ++ G V V KNPC HPGDVR LKA++ P L+ + + F GM P
Sbjct: 216 IDNLMKPK------VIIGRVAVLKNPCHHPGDVRFLKAIDHPPLNGKRNVLFFSTNGMVP 269
Query: 582 HPNECSGSDLDGDIYFVCWDDELI-------PPQQDPPMDYTPAQSMQLDHDVQIED--- 631
+ +CSGSDLDGD YFV +D LI P P + D Q E+
Sbjct: 270 NFKQCSGSDLDGDRYFVIYDQTLIREDLITHEPYLGEEQTVNPLIGEEDSDDDQYENDDN 329
Query: 632 -------------------VEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLA 672
+ + + + LG I+N H +D E K S +++A
Sbjct: 330 DITIPTSTTTKSTNNTPTKLSDIYLKNVDKSKLGTISNTHLAISDIE--KVSSINSIKVA 387
Query: 673 EKFSIAVDFPKTGV----PAEIPPHLYVKEYPDFMEKPDKPTYE-----------SQNVI 717
+ +I VD KT V P ++ L K YP FM+ + T+E S VI
Sbjct: 388 IQCAIEVDSVKTSVHGIIPRDVKSILKEKGYPHFMKIKNGSTFEYKGGNQRKYYISDRVI 447
Query: 718 GKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHK-GNYDYKLGNL 776
GK++ + +++ F + D + V G++++++ + +Y K+ ++
Sbjct: 448 GKIYDSAENLL-------WFGDFLPEAKVDESLLVQGYKEYLNHENFTTYMDYKSKINSI 500
Query: 777 MDYYGIKTEAEILTGSIMKMSKSFTKRRDAEA 808
+ +G ++E ++L G M F+++ EA
Sbjct: 501 LRRFGAQSEEDLLIGF---MDPQFSEKLSIEA 529
>gi|290988183|ref|XP_002676801.1| predicted protein [Naegleria gruberi]
gi|284090405|gb|EFC44057.1| predicted protein [Naegleria gruberi]
Length = 1650
Score = 155 bits (393), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 142/521 (27%), Positives = 233/521 (44%), Gaps = 74/521 (14%)
Query: 210 IYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM---GNFR 266
+ +I+ + I +++ + S S LR + F + +E+ E M G +
Sbjct: 295 VKVKIIDVVPASIECCGKEYRPVGGSLSMLRSDYVYFFDTTAMPACSEVDELMQIFGTYD 354
Query: 267 EIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFAR 326
N K +R +F+++KET +++ + VK E+ +DGIGK+S A+
Sbjct: 355 SNLNPFKLVSRHALNFTTTKETCTINKWKC-----VKDELAIDGSEMTDGIGKISQSIAQ 409
Query: 327 KVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS----SKKLSLRDSMRKY--ESELTKLD 380
+++++ GL + P+A QIR+ G+KGV++ P + LR+SM K+ + EL K++
Sbjct: 410 QISNQLGLV-SVPTALQIRFLGFKGVLSVLPDEDLGDGMDVILRESMCKFNGKEELNKIE 468
Query: 381 VLAWSKY-QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMS 439
+++ + +P +LN+Q+I LL+TLGI E F + + L +T P + L+
Sbjct: 469 LVSCTTARKPAYLNKQIILLLTTLGITKETFLSIFLDYFKDLSEKITSPKYFLKVLK--- 525
Query: 440 PGENT-NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 498
EN + L + PD E FL + + ++ +++TK I I M +DE
Sbjct: 526 --ENCMDTLPAIQSLNEMPDDE-FLQYLARYLIYDEIKKVQTKAMIPIEKAVIAMSIVDE 582
Query: 499 TRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLK 558
+ L +V VQ+ Y + + V + +NPCLHP D++
Sbjct: 583 YKQLKENEVMVQLGDGNYIEDGTQ------------------VFICRNPCLHPSDIQTFT 624
Query: 559 AVNVPALHHMV----DCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQ------ 608
+ L ++FP +G D DGD FVCWD LIP Q
Sbjct: 625 CRDNSLLRSKYRPSNAAIIFPTQGY----TSIKICDFDGDRVFVCWDSRLIPDQVSNLSP 680
Query: 609 ---QDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSL-GIIANAHTVFADREPRKAR 664
+ PM+ T S E + + N L G I++A D E A
Sbjct: 681 LTHDNEPMESTTEHS-------------EVLSKILENGKLLGKISDAWVAIVDSE--GAD 725
Query: 665 SEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEK 705
S+ L+LA+ F AVDFPK G +P YPDFME+
Sbjct: 726 SDRALELADLFVKAVDFPKNGKQISLPNWFKDIIYPDFMER 766
>gi|402594185|gb|EJW88111.1| hypothetical protein WUBG_00980 [Wuchereria bancrofti]
Length = 902
Score = 154 bits (390), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 132/420 (31%), Positives = 202/420 (48%), Gaps = 57/420 (13%)
Query: 135 SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTD 194
S D+G V + +TP+R+ PE+ + NRVLR F D+ LRI F D+D +
Sbjct: 464 SADEGFQRVRKAVITPTRMLLVVPELLMGNRVLREFDESGDSALRIQFRDDDGAHLR--- 520
Query: 195 LSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLT 254
R + I T I+ +L G+ I DR F +LA S+SQ+R++ + F
Sbjct: 521 ---RSRAGLYIIETTIHNCLL----RGVHISDRHFVYLASSNSQMRDNGCYFFNDGVDGK 573
Query: 255 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKET-LSVHMDEIEIIPDV---KIEIGKTK 310
+IR+ +G F N+ K +R+GQ F+ SKE+ +++ + DV K G+
Sbjct: 574 VKKIRDKLGKFDHT-NIPKLMSRMGQCFTQSKESDVTLRRRKYNKTYDVIGGKDSCGEP- 631
Query: 311 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS------SKKLS 364
++FSDG+GK+S +FA ++A+ GL PS FQ RY G KGV++ DP +++
Sbjct: 632 FIFSDGVGKLSEDFAEQIANDLGLGKCVPSCFQFRYRGLKGVLSVDPALRQRRLWAERNG 691
Query: 365 LRDSMRKYESELTKLDVL---AWSKYQ--------------PCF--LNRQLISLLSTLG- 404
L D K E ++ LD+L + K+ P F LNR LI++L +
Sbjct: 692 LEDKHAKTE-KVNDLDILFRPSQDKFHAPRKEIIEIVKYSCPTFVYLNRPLINILDQVSD 750
Query: 405 ---------IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGY 455
I + I R+ ++ DA++++ + +E L N L L G+
Sbjct: 751 MQGFDVHSRIVNRIHGLLDRQLLKLSDALMSED-RCRERLAEFPRRINVQYLS--LARGF 807
Query: 456 KPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISG 513
EPF +L L + +K I IP GR+M G LDET L YGQVFVQ +
Sbjct: 808 TLTQEPFFHGLLIASVRFALQKQLSKEHIQIPTNLGRTMFGILDETGLLQYGQVFVQFTN 867
>gi|405974296|gb|EKC38952.1| Putative RNA-dependent RNA polymerase SHL2 [Crassostrea gigas]
Length = 520
Score = 154 bits (388), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/254 (39%), Positives = 139/254 (54%), Gaps = 22/254 (8%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
V R +TPSR+ E NR+LR + + D F+R+ + DED +KI
Sbjct: 255 VRRAVLTPSRLILLSKEPVYFNRILRQY--NADYFIRLVYRDEDFEKISGMKYRGPQHLL 312
Query: 203 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM 262
D+ + I NG I DR +EFL S+SQLRE S W F+S G+TA IR+
Sbjct: 313 EDMKQHFI---------NGFTIYDRHYEFLGCSNSQLREHSFWFFSSYDGITAEFIRQSS 363
Query: 263 GNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE--IGKTKYVFSDGIGKV 320
G+ + R VA Y +R G FSSS TL++ E +V+ E + + Y F+DGIGK+
Sbjct: 364 GDLAKERCVASYVSRFGLCFSSSWNTLTIEEHE-----EVRFEKDVTRNGYCFTDGIGKI 418
Query: 321 SAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK---LSLRDSMRKYESELT 377
S A KVA L + PSAFQIRYGG KGV+A DP+ + + +R+SM+K+ES
Sbjct: 419 SKRLAAKVAKSMDL-NIVPSAFQIRYGGCKGVIAIDPSLGENREIIVIRESMKKFESNSK 477
Query: 378 KLDVLAWSKYQPCF 391
L+VL S+ CF
Sbjct: 478 SLEVLQVSRPVFCF 491
>gi|440493516|gb|ELQ75976.1| RNA-directed RNA polymerase QDE-1, partial [Trachipleistophora
hominis]
Length = 714
Score = 154 bits (388), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/190 (44%), Positives = 117/190 (61%), Gaps = 7/190 (3%)
Query: 536 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDI 595
+V G +VAKNPCLHPGD+R + V L H + +VF +KG RP N CSGSDLDGD+
Sbjct: 256 VVVGNAIVAKNPCLHPGDIRKVHCVYKKELLHYKNVLVFSRKGTRPTFNMCSGSDLDGDL 315
Query: 596 YFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVF 655
YF+ WD LIP + P Y + + +H V +D+ +FT + D LG I+NAH V+
Sbjct: 316 YFISWDKRLIPRNEHFPQSYQSSSYLSKEHIVT-QDMVNFFTRFAKEDELGKISNAHLVY 374
Query: 656 ADREPRKARSEP-CLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQ 714
+D ++P L+LA FS+ VDFPKTG A +P +L + YPDFME+ +Y+S
Sbjct: 375 SDIH---GITDPQALKLAYLFSMGVDFPKTGYIARLPQNLEPEVYPDFMER--GRSYKSG 429
Query: 715 NVIGKLFRAV 724
V+G L+R V
Sbjct: 430 RVMGVLYRRV 439
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 84/173 (48%), Gaps = 22/173 (12%)
Query: 339 PSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLIS 398
P+AFQIR+ GYKGVV L LR SMRK+ S T L+V+ +S+ C+LNRQ+I
Sbjct: 15 PTAFQIRFAGYKGVVVRAHIP-HDLILRKSMRKFNSTYTILEVVNYSQPIECYLNRQIIM 73
Query: 399 LLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPD 458
+L LGI F Q E + Q+ + L I K I G
Sbjct: 74 ILEGLGIPKHNFISLQNEYLMQMYRAINHSL----------------ISKYCRIGGVALV 117
Query: 459 AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI 511
+++ + FR E+ K RIF+ NG +MG +DE L +VFV++
Sbjct: 118 DRMSGAVIGRLFR-----EMCAKGRIFVSNGVVLMGVIDEEGVLGENEVFVRV 165
>gi|241083169|ref|XP_002409050.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215492623|gb|EEC02264.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 167
Score = 154 bits (388), Expect = 3e-34, Method: Composition-based stats.
Identities = 80/168 (47%), Positives = 108/168 (64%), Gaps = 6/168 (3%)
Query: 487 PN-GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 545
PN GR+M+G LDET++L YG+VFVQ + QL + S + I+ G V+V K
Sbjct: 3 PNTGRNMLGVLDETQSLEYGEVFVQFT---EHQLD-DGSCEDDPKVPTTKILVGAVLVTK 58
Query: 546 NPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
PCLHPGDVR AV++P LHH+ DC+VFP KG RPHPNE +GSDLDGD Y V W+ +L+
Sbjct: 59 CPCLHPGDVRKFAAVDIPGLHHVKDCIVFPAKGPRPHPNEMAGSDLDGDEYIVIWEKDLL 118
Query: 606 PPQQDPPMDYTPAQSMQLDHDVQIED-VEEYFTNYIVNDSLGIIANAH 652
P + P S + D +ED + ++ NYI ND++GI++NAH
Sbjct: 119 FPGNNQPAMVFCDHSSVVPSDDSLEDGMVKFICNYIKNDNVGILSNAH 166
>gi|440298585|gb|ELP91216.1| RNA-dependent RNA polymerase, putative [Entamoeba invadens IP1]
Length = 1008
Score = 152 bits (385), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 161/577 (27%), Positives = 247/577 (42%), Gaps = 102/577 (17%)
Query: 161 NVSNRVLRHFRRDID-NFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLR 219
N SN +L F + LR+ F++ + +K+H + TD+ + S +
Sbjct: 246 NESNAILEDFSEEFRVKMLRLKFLNNE-NKMHVLE-----RVDTDLLAFYLVKGYSSYFQ 299
Query: 220 NGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMG---NFREIRNVAKYAA 276
N R++EF + SQ R + W + +T +G +I+N
Sbjct: 300 N------RRYEFFLSNPSQSRSGACWFIDNTDDITRVAAYNSLGIDLKSAKIKNSGILLM 353
Query: 277 RLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS---KCG 333
R G S S T ++ +I+ I DV E G Y FSDG+G++S A KV + +CG
Sbjct: 354 RAGLFGSDSVATAGIYPQQIKRIEDVTNEGG---YTFSDGVGRISLSLASKVFAEYRRCG 410
Query: 334 ---LKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYES---ELTKLDVLAWSK 386
++ P+AFQIR+ G KGVV+ D S+ + R S K E+ + KL V+ +
Sbjct: 411 ENVIRVEEPAAFQIRFAGVKGVVSVDCLDKSENIYFRPSQIKIEAFPERVQKLRVVQIPQ 470
Query: 387 YQPCFLNRQLISLLSTLGI--------WDEIFEK-----KQREAVRQLDAILTDPLKAQE 433
Y+ +N QL L L I E K E VR +P A
Sbjct: 471 YRSGRMNEQLALGLEYLEIPIPNFIQCAKEYLRKYFTSIPNDEVVRLFQKNAKNPTVAIA 530
Query: 434 ALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 493
+M+ G ++ I +E PF+ R + L E + I N +M
Sbjct: 531 LKMVMAAGRDSKIFEE-----------PFVKANSLVLRMAMLSEKSDFIKFDIDNSAFLM 579
Query: 494 GCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGD 553
G +DET L GQVF+Q+S S F+ ++ K P HPGD
Sbjct: 580 GVMDETGILEEGQVFIQLS------------------SNSVFVPSSRLLAVKFPATHPGD 621
Query: 554 VRVLKAV--NV--------PALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
+L+ V NV L ++ D +VF KG RP PN+ +G DLDGD Y V W+
Sbjct: 622 FLLLRNVCENVLFERKRGYERLAYLKDVIVFSSKGYRPDPNKMAGGDLDGDEYLVIWNPL 681
Query: 604 LIP---PQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVND-SLGIIANAHTVFADRE 659
+P + PP +Y ++ L+ ++ D++ F + + + L I+ H
Sbjct: 682 FLPKLGKKSHPPANYDFEET-HLERFLEYNDMKHAFVSQLYSKYVLAQISTCH------- 733
Query: 660 PRKA------RSEPCLQLAEKFSIAVDFPKTGVPAEI 690
+KA + E L++ S+AVD PKTG AEI
Sbjct: 734 -KKACMSLGMQDEISKALSQLISVAVDAPKTG--AEI 767
>gi|341879478|gb|EGT35413.1| hypothetical protein CAEBREN_30970 [Caenorhabditis brenneri]
Length = 1948
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 162/598 (27%), Positives = 254/598 (42%), Gaps = 89/598 (14%)
Query: 362 KLSLRDSMRKYESELTKLD-----VLAWSKYQPCFLNRQLISLLSTLG----------IW 406
K R+S K+ S D ++ WS P LNR I++L + I
Sbjct: 902 KCLFRESQMKFHSSTGGKDKWPIELVKWSSPTPVTLNRPFINILDQVSALQSLDCHKRIC 961
Query: 407 DEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMM 466
I E E D I+ + K + LE M + G+ EPF +
Sbjct: 962 GRIEELLDIEMDSFTDCIINED-KCRSKLEGMP--RRVHFPSLWRRNGFSLCTEPFFRAL 1018
Query: 467 LQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQI---------SGAG 515
++ ++ L K I IP+ GRSM G DET L YGQVFVQ SG
Sbjct: 1019 IKAAIDFSMMRLLKKVNIPIPSNVGRSMFGVTDETGLLQYGQVFVQYTENVNNKHPSGVS 1078
Query: 516 YRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFP 575
+ L G+S+ S + +FI G ++V K P + GDVR+ +AV++P L H+ + +VFP
Sbjct: 1079 GKILKGKSNFLSF---KIQFI-SGPLMVTKFPSMCEGDVRMYEAVDIPELRHLENVIVFP 1134
Query: 576 QKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQ-SMQLDHDVQIEDVEE 634
Q G R P+E +GSDLDGD Y V WD L + + Y + +L+ D E +
Sbjct: 1135 QNGPRSMPDEMAGSDLDGDEYAVIWDPFLFFERNETAFAYCNDKPEKKLNIDEMDEGMNV 1194
Query: 635 YFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAE----- 689
++ ++ + +GI A H +D+ S+ C LAEK ++ +D+ K+GV
Sbjct: 1195 FYAEFMNQEDVGITATNHLHQSDQ--YGINSKVCNILAEKNAMLLDYSKSGVAPSPLTFN 1252
Query: 690 ----------IPPHLYVKEYPDFMEK--PDKPTYESQNVIGKLFRAVKDIAPHTSCIRLF 737
+PP ++ PDF TY+S ++G L R ++ + +
Sbjct: 1253 WDKHPETKKWVPPEKSERK-PDFANNRFSMNQTYQSSRLLGTLHRELRSV---NDVVATS 1308
Query: 738 TKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKM- 796
++ D + G+E + A Y+ L ++M+ +G+ TEAE+ +G ++
Sbjct: 1309 AEKQVPLVLDDLLVWTGWEQYKSVAEAQLLRYNGALRSIMETFGVNTEAEVFSGYYREIR 1368
Query: 797 SKSFTKRRD-------AEAIGMAVRALRKEARAWFKEKSGSDTEDD-AYAKAS------A 842
++ K +D I V AL ++ RA F E+ T D AY + +
Sbjct: 1369 NRQSDKEQDDMSQYCTENVIETQVTALYRKFRAEFFEEFAEHTPDSPAYMRLTVPENERV 1428
Query: 843 W------YHVTYHPD----------YWGCYNQGMNR-DHFLSFPWCVYDRLVEIKKDK 883
W V P Y CY + + D LSF W YD L ++ K
Sbjct: 1429 WEEKDVLRRVCRKPSNAMMAKAVAYYRTCYQNAVEKGDRKLSFAWLAYDILNIVRGKK 1486
>gi|402580635|gb|EJW74584.1| hypothetical protein WUBG_14509 [Wuchereria bancrofti]
Length = 168
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 112/168 (66%), Gaps = 10/168 (5%)
Query: 492 MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 551
M G +DET L +GQ+FVQ + + L + S+S + I++G V++ KNPC+
Sbjct: 1 MFGVMDETGQLQWGQIFVQCTRNIW--------LKTPSQSAAKIILKGKVMLTKNPCIVA 52
Query: 552 GDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP 611
GDVRV +AV++P LHH+VD VVFPQ G RPHP+E +GSDLDGD Y V WD +LI +P
Sbjct: 53 GDVRVFEAVDIPELHHLVDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQKLIFEHNEP 112
Query: 612 PMDYTPAQS-MQLDHDVQIE-DVEEYFTNYIVNDSLGIIANAHTVFAD 657
P+D+T + S ++ + Q++ ++ ++F NYI DS+G I+NA V AD
Sbjct: 113 PLDFTKSTSGNKIIDEAQVDLEMRKFFVNYIKQDSIGSISNAFLVNAD 160
>gi|105990550|gb|ABF81697.1| truncated MOP1 [Zea mays]
Length = 310
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 133/228 (58%), Gaps = 8/228 (3%)
Query: 34 YSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISC 93
+ S ++VP+V P+G ++PYE+LF++N LV G + ++++ +++++ +SI
Sbjct: 88 FGSSSNVVPLVDCPNGFSVPYEVLFRLNSLVHMGKLVARHVNADLFKVLED----LSIDT 143
Query: 94 IEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRV 153
+ +K+ LK CYEP +++ + M R K S L+ +R+ +TPS++
Sbjct: 144 LRRIFEKMSKLKSTCYEPLQFIRHEAHS-MNMRKKALSNKRE-SGKLMRCYRIHITPSKI 201
Query: 154 YFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA--TDITRTRIY 211
Y GPE VSN V+++ +F R++F+DED K+ LS R + +T +Y
Sbjct: 202 YCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALSARTEQGFFSKPLKTGLY 261
Query: 212 TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 259
RILS L+ G IG +K+EFLAFS+SQLR +S WMFAS LTA IR
Sbjct: 262 HRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNSSLTAENIR 309
>gi|313244084|emb|CBY14941.1| unnamed protein product [Oikopleura dioica]
Length = 784
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 150/536 (27%), Positives = 228/536 (42%), Gaps = 93/536 (17%)
Query: 227 RKFEFLAFSSSQLRESSAWMFASRYGLTAAE---IREWMGNFREIRNVAKYAARLGQSFS 283
R+F+ LA + ++ + A RY L + + GNF +I+ V+KYAAR+G S
Sbjct: 245 REFDDLAKITVRVDRAEA-----RYSLVKRALPYVWNYFGNFNKIKIVSKYAARIGLLMS 299
Query: 284 SSKETLSVHMDEIEIIPDVKIEIGK----------TKYVFSDGIGKVSAEFARKVASKCG 333
+ T+ +PD K K KY F+DG G++ A K
Sbjct: 300 PTAATI--------FVPDKKWAREKDIVGGPPKNPEKYEFTDGCGRMCTRVAEMFRDKLN 351
Query: 334 LKD--------NPPSAFQIRYGGYKGVVAADPTSSKK----LSLRDSMRKYESELTKLDV 381
LK PS Q R G KG+ DPT + +RDS K++ + +
Sbjct: 352 LKHLYRHQGAYCVPSVIQFRMMGCKGIFVHDPTLDDADKPWVMIRDSQWKFDWNMNTVKH 411
Query: 382 LAWSK------------------YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 423
L K + LN Q + LL LG+ D F Q++ +L
Sbjct: 412 LERDKDGNPGRAMGVCSNGFSRPFSFGKLNEQFVVLLDALGLEDNTFLNIQKDHFERLKR 471
Query: 424 ILTDPLKAQEALELMSPGENTNILKEL---------LICGYKPDAEPFLSMMLQTFRASK 474
+ D + A E L + ++L +I K +P L + + +
Sbjct: 472 CMDDRIAAFEILSSEKRMDEADLLDRTDEDSPYPPEVINTLKRFRKPVFD--LPSAKPDR 529
Query: 475 LLELRTKTRIF---IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRS 531
E K F I R++ G D + L G+ FVQI+ Y ++ + +SR
Sbjct: 530 REEKNIKNAAFYIPISKSRNVYGVADISGKLRKGECFVQITQ--YEEVVDKKR--GTSRK 585
Query: 532 RQRFIVQG---LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGM-------RP 581
+R + G V+V K P HPGD RVL+ +VP L H+ D +VFP RP
Sbjct: 586 ERRMLPLGNGAKVLVNKCPTYHPGDFRVLQNTHVPELMHLCDVIVFPVYDKVYNPDLKRP 645
Query: 582 HPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSM--QLDHDVQIEDVEEYFTNY 639
HP+E SDLDGD YFV WD+ LIP + + P P +++ + ++ ++D+ FT
Sbjct: 646 HPHEMHESDLDGDEYFVSWDERLIPEKLEKPFP-CPDKTIGANIKDEITVQDLIREFTA- 703
Query: 640 IVNDSLGIIANAHTVFAD-REPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHL 694
S ++ + +F D + A S C QLA+ F+ +VD K G EI HL
Sbjct: 704 ----SEHLVGRINNLFIDWAKLAGASSNECRQLAKLFNQSVDTAKHGGKVEISKHL 755
>gi|255635133|gb|ACU17923.1| unknown [Glycine max]
Length = 290
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 136/269 (50%), Gaps = 35/269 (13%)
Query: 640 IVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEY 699
+VN+ LG I NAH V AD A E C+ LAE + AVDFPKTG +PPHL K Y
Sbjct: 1 MVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPPHLKPKLY 60
Query: 700 PDFMEKPDKPTYESQNVIGKLFRAVKDI------APHTSCIRLFTKEVARRSYDPDMEVD 753
PDFM K +Y S+ ++G+L+R +KD AP+ + + YD D+EV
Sbjct: 61 PDFMGKERHQSYRSKKILGRLYRRIKDAYDEDIDAPYLNFV------TGGIPYDKDLEVP 114
Query: 754 GFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD--AEAIGM 811
G D I DA K +YD +L L+ Y +K E E++TG I M K ++++ E +
Sbjct: 115 GSADFIADAWEQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNSRKQGELKERLKH 174
Query: 812 AVRALRKEARAWFKEKSGSDT------EDDAY--AKASAWYHVTYHPDYW---------G 854
+ AL+KE R F EK SD E + + KASAWY VTYHP++
Sbjct: 175 SYSALKKEFRHTF-EKLNSDVGELSEEEKNLFYEQKASAWYQVTYHPEWVKKSLDLQDKS 233
Query: 855 CYNQ---GMNRDHFLSFPWCVYDRLVEIK 880
NQ + LSFPW D L K
Sbjct: 234 SENQEADSLGSTVMLSFPWIAVDYLARTK 262
>gi|391343492|ref|XP_003746043.1| PREDICTED: uncharacterized protein LOC100902078 [Metaseiulus
occidentalis]
Length = 1371
Score = 146 bits (368), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 192/788 (24%), Positives = 326/788 (41%), Gaps = 97/788 (12%)
Query: 120 RKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLR 179
RK +SR+ + + D L V R V PS+ P + + +LR D + +
Sbjct: 377 RKGKSSRTSIINQKLPQD--LYLVKRAIVCPSKTIVKPPTVVRVSALLRSV--DPEKVML 432
Query: 180 ISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL 239
+ D+D ++ + + RT I I ++ GI I + + FL S SQ
Sbjct: 433 VDVRDDDGTRLRF--------NTQNEARTFIQVSIAEKIKRGIKIAGKTYYFLGNSKSQA 484
Query: 240 RESSAWMFASRYGLT--AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVH----M 293
+ S W +A G T + +RE +G N+A+ A F+ + +S+
Sbjct: 485 EDFSFWAYAIEKGDTDTISSVRERLGI---TGNLARRIAVQDLVFAEALGAVSIDPSWVS 541
Query: 294 DEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVV 353
+E E +P F GIG++S R V C SA ++ +GG +G +
Sbjct: 542 EESEDVPAASD--------FKHGIGRISEAALRTVVENCHWSRTLCSAIRVIHGGRRGTL 593
Query: 354 AADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTL--GIWDEIF 410
DP+ ++ R S SE + L ++ S+ + +R LIS LS+ G+ +E
Sbjct: 594 VYDPSLEGSRIIYRKSQTVIRSEDSTLYLIGRSEMKNAAFDRTLISTLSSKADGLTEEF- 652
Query: 411 EKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL-----ICGYKPDAEPFLSM 465
+ + L +LT+PL + +L + + GY + +
Sbjct: 653 --SVEDFLTPLYELLTEPLSLYSTGARVKRVAAEPVLDHIFRKGEDLYGYDKRGD---GL 707
Query: 466 MLQTFRASKLLELR--TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGES 523
Q R L LR K + + N +M +DE L G+VF+Q+S G G+
Sbjct: 708 FRQAVRCKALKALRDLKKLKQHMTNAYEIMPVVDELGLLEEGEVFIQVSSPG-----GDL 762
Query: 524 SLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP----ALHHMVDCVVFPQK-G 578
+ S G +V+A+ +H + R + AVN P AL H+ +CVV P K G
Sbjct: 763 RVLS-----------GDLVLARKDAMHLEEFRRVTAVNRPDVVGALGHLFNCVVLPSKGG 811
Query: 579 MRP---HPNECSGSDLDGDIYFVCWDDE---LIPPQQDPPMDYTPAQSMQLDHDVQIEDV 632
RP E S + I DE + + DPP + A ++D D
Sbjct: 812 SRPLEFLAREASYAGESDIILIASHPDEEPAFLFKRNDPPRSTSIAVGSEVDASC---DT 868
Query: 633 EEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPP 692
E ++ NY+ S AD P+ A SE C+++ + + + + G E+ P
Sbjct: 869 ETHYFNYLAYVSFNDFEEVFCALADSLPQHASSESCIRVGVQRRLLDKYRRGG--REVAP 926
Query: 693 HLYVKEYPDFMEK-PDKPTYESQNVIGKLFRAVKDI-APHTSCIRLFTKEVARRSYDPDM 750
V +P F+EK D+ TY S +G ++R + I + ++ T+++ ++ ++
Sbjct: 927 LPKVVNFPHFLEKISDRRTYCSARPLGHIYRKGRLIDTEYFEDTQMMTEDL---TFQHEL 983
Query: 751 EVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMK---MSKSFTKRRDAE 807
V+G E + A + L + YGI + E+LTG+I S +R D E
Sbjct: 984 RVEGSEAFAEIAARDIRQFRGDLEGIASLYGISVD-EVLTGTIFSDRGQHSSNERRSDIE 1042
Query: 808 -AIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFL 866
A+ + V+ L R FK+ +E + K SA+Y ++ +D
Sbjct: 1043 AAVKLQVKHLALICRRKFKKGMEKASELEVLQKISAYY----------VASRDFPKDGGY 1092
Query: 867 SFPWCVYD 874
+FPW + D
Sbjct: 1093 AFPWMLPD 1100
>gi|183233879|ref|XP_651309.2| RNA-directed RNA polymerase [Entamoeba histolytica HM-1:IMSS]
gi|169801365|gb|EAL45936.2| RNA-directed RNA polymerase, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449710750|gb|EMD49768.1| RNA-dependent RNA polymerase, putative [Entamoeba histolytica KU27]
Length = 1026
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 132/505 (26%), Positives = 216/505 (42%), Gaps = 79/505 (15%)
Query: 227 RKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMG---NFREIRNVAKYAARLGQSFS 283
R F+FL + SQ R + W ++ G T + +G +I+N R G S
Sbjct: 338 RYFQFLLSNPSQSRSGACWFIDNQDGKTTMAAYQSLGIDLKSPKIKNAGILLMRTGLFGS 397
Query: 284 SSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVA------SKCGLKDN 337
S T+ ++ +I++I D+ E G Y FSDG+G++ A+KV S +K +
Sbjct: 398 DSIATVGIYPQQIKVIDDITNENG---YTFSDGVGRIGYPLAKKVLNEYKRNSNLFIKSD 454
Query: 338 PPSAFQIRYGGYKGVVAADPTS-SKKLSLRDSMRKYES---ELTKLDVLAWSKYQPCFLN 393
P AFQIR+ G KGV+ D ++ + R S K E+ + KL V+ +++ +N
Sbjct: 455 EPYAFQIRFAGVKGVLTVDRLDMTENIYFRPSQIKIEALPKTIQKLRVIQIPQFRSGRMN 514
Query: 394 RQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLIC 453
QL L L I F ++ +++ ++ + +E + L N +++ L
Sbjct: 515 EQLALGLEYLQIPPSNFISSAKQYLKKYFSVTPN----REIISLFQRFTNNPVIEVALKI 570
Query: 454 ------GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQV 507
K EPF+ R S L E + I N +MG +DE+ L G+V
Sbjct: 571 IMASNGNQKIYEEPFIRATSLVLRMSLLSEKTDFIKFDIDNSAFLMGVMDESGLLEEGEV 630
Query: 508 FVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAV------- 560
F+Q++ + + SSR ++V K P HPGD +L V
Sbjct: 631 FIQVTTS--------TVTIPSSR----------LLVVKFPATHPGDFVLLNNVVDKINLE 672
Query: 561 ---NVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP---QQDPPMD 614
L ++ D +VF KG RP PN+ SG DLDGD Y + W+ +P P
Sbjct: 673 KKKGFERLTYLRDVIVFSSKGNRPDPNKLSGGDLDGDEYLIIWNPLFLPKPEIHSHAPAT 732
Query: 615 YTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQ---- 670
Y ++ + L+ ++ D++ F ++ ++ F A E C+
Sbjct: 733 YD-SEKVHLEKFLEFTDMKRAF-----------LSQLYSKFVLSRISVAHKESCMNIGMC 780
Query: 671 ------LAEKFSIAVDFPKTGVPAE 689
L++ SI VD PKTG +
Sbjct: 781 AEVTKSLSQLISITVDAPKTGAEVD 805
>gi|167375406|ref|XP_001733628.1| RNA-dependent RNA polymerase [Entamoeba dispar SAW760]
gi|165905172|gb|EDR30241.1| RNA-dependent RNA polymerase, putative [Entamoeba dispar SAW760]
Length = 1026
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 132/505 (26%), Positives = 216/505 (42%), Gaps = 79/505 (15%)
Query: 227 RKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMG---NFREIRNVAKYAARLGQSFS 283
R F+FL + SQ R + W ++ G T + +G +I+N R G S
Sbjct: 338 RYFQFLLSNPSQSRSGACWFIDNQDGKTTMAAYQSLGIDLKSPKIKNAGILLMRTGLFGS 397
Query: 284 SSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVA------SKCGLKDN 337
S T+ ++ +I++I D+ E G Y FSDG+G++ A+KV S +K +
Sbjct: 398 DSIATVGIYPQQIKVIDDITNESG---YTFSDGVGRIGYPLAKKVLNEYKRNSNLFIKSD 454
Query: 338 PPSAFQIRYGGYKGVVAADPTS-SKKLSLRDSMRKYES---ELTKLDVLAWSKYQPCFLN 393
P AFQIR+ G KGV+ D ++ + R S K E+ + KL V+ +++ +N
Sbjct: 455 EPYAFQIRFAGVKGVLTVDRLDMTETIYFRPSQIKIEALPKTIQKLRVIQIPQFRSGRMN 514
Query: 394 RQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLIC 453
QL L L I F ++ +++ ++ + +E + L N +++ L
Sbjct: 515 EQLALGLEYLQIPPSNFISSAKQYLKKYFSVTPN----REIISLFQRFTNNPVIEVALKM 570
Query: 454 ------GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQV 507
K EPF+ R S L E + I N +MG +DE+ L G+V
Sbjct: 571 IMASNGNQKIYEEPFIRATSLVLRMSLLSEKTDFIKFDIDNSAFLMGVMDESGLLEEGEV 630
Query: 508 FVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAV------- 560
F+Q++ + SSR ++V K P HPGD +L V
Sbjct: 631 FIQVTSP--------TITIPSSR----------LLVVKFPATHPGDFVLLNNVVDKINLE 672
Query: 561 ---NVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP---QQDPPMD 614
L ++ D +VF KG RP PN+ SG DLDGD Y + W+ +P PP
Sbjct: 673 KKKGYERLTYLRDVIVFSSKGNRPDPNKLSGGDLDGDEYLIIWNPLFLPKPEINSHPPAI 732
Query: 615 YTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQ---- 670
Y ++ + L+ ++ D++ F ++ ++ F + E C+
Sbjct: 733 YD-SEKVHLEKFLEFTDMKRAF-----------LSQLYSKFVLSRISVSHKESCMNIGMC 780
Query: 671 ------LAEKFSIAVDFPKTGVPAE 689
L++ SI VD PKTG +
Sbjct: 781 AEVTKSLSQLISITVDAPKTGAEVD 805
>gi|407036402|gb|EKE38145.1| RNA-directed RNA polymerase, putative [Entamoeba nuttalli P19]
Length = 1026
Score = 142 bits (358), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 131/505 (25%), Positives = 215/505 (42%), Gaps = 79/505 (15%)
Query: 227 RKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMG---NFREIRNVAKYAARLGQSFS 283
R F+FL + SQ R + W ++ G T + +G +I+N R G S
Sbjct: 338 RYFQFLLSNPSQSRSGACWFIDNQDGKTTMAAYQSLGVDLKSPKIKNAGILLMRTGLFGS 397
Query: 284 SSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVA------SKCGLKDN 337
S T+ ++ +I++I D+ E G Y FSDG+G++ A+KV S +K +
Sbjct: 398 DSIATVGIYPQQIKVIDDITNENG---YTFSDGVGRIGYPLAKKVLNEYKRNSNLFIKSD 454
Query: 338 PPSAFQIRYGGYKGVVAADPTS-SKKLSLRDSMRKYES---ELTKLDVLAWSKYQPCFLN 393
P AFQIR+ G KGV+ D ++ + R S K E+ + KL V+ +++ +N
Sbjct: 455 EPYAFQIRFAGVKGVLTVDRLDMTENIYFRPSQIKIEALPKTIQKLRVIQIPQFRSGRMN 514
Query: 394 RQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLIC 453
QL L L I F ++ +++ ++ + +E + L N +++ L
Sbjct: 515 EQLALGLEYLQIPPSNFISSAKQYLKKYFSVTPN----REIISLFQRFTNNPVIEVALKI 570
Query: 454 ------GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQV 507
K EPF+ R S L E + I N +MG +DE+ L G+V
Sbjct: 571 IMASNGNQKIYEEPFIRATSLVLRMSLLSEKTDFIKFDIDNSAFLMGVMDESGLLEEGEV 630
Query: 508 FVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAV------- 560
F+Q++ + SSR ++V K P HPGD +L V
Sbjct: 631 FIQVTTP--------TVTIPSSR----------LLVVKFPATHPGDFVLLNNVVDKINSE 672
Query: 561 ---NVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP---QQDPPMD 614
L ++ D +VF KG RP PN+ SG DLDGD Y + W+ +P P
Sbjct: 673 KKKGFERLTYLRDVIVFSSKGNRPDPNKLSGGDLDGDEYLIIWNPLFLPKPEIHSHAPAT 732
Query: 615 YTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQ---- 670
Y ++ + L+ ++ D++ F ++ ++ F + E C+
Sbjct: 733 YD-SEKVHLEKFLEFTDMKRAF-----------LSQLYSKFVLSRISVSHKESCMNIGMC 780
Query: 671 ------LAEKFSIAVDFPKTGVPAE 689
L++ SI VD PKTG +
Sbjct: 781 AEVTKSLSQLISITVDAPKTGAEVD 805
>gi|405974297|gb|EKC38953.1| Translocon-associated protein subunit beta [Crassostrea gigas]
Length = 1284
Score = 140 bits (354), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 135/251 (53%), Gaps = 17/251 (6%)
Query: 139 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPR 198
G + R+ +TP++ F E V NR++R + + F+RI F DED +K+ + ++P
Sbjct: 457 GYSNIRRIVLTPTKHVFYPKEPIVQNRIIRQYAEEY--FIRIVFRDEDYEKVSA--IAPN 512
Query: 199 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEI 258
+ + + L G I R++EFL S+SQLRE W F A I
Sbjct: 513 SLDS-------VIDAMKQFLCAGFRILTRRYEFLGCSNSQLREHGFWFFCPNDDTNAQMI 565
Query: 259 REWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIG 318
R+ G+ R VA Y +R G FS+S++T+ V M + E++ IE Y FSDGIG
Sbjct: 566 RDNCGDIYLERCVASYVSRFGLCFSASRDTVDVGMQDGELVHQKDIEW--NNYCFSDGIG 623
Query: 319 KVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK---LSLRDSMRKYESE 375
K+S A KV G K PSAFQIRYGG KGVV+ DP ++ L +R+SM K+ SE
Sbjct: 624 KISPCLANKVTKALGYK-VKPSAFQIRYGGCKGVVSQDPDLGEEKDVLVIRESMNKFNSE 682
Query: 376 LTKLDVLAWSK 386
KL++L +K
Sbjct: 683 SKKLEILQVTK 693
>gi|397614211|gb|EJK62661.1| hypothetical protein THAOC_16717 [Thalassiosira oceanica]
Length = 540
Score = 139 bits (350), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 112/393 (28%), Positives = 192/393 (48%), Gaps = 80/393 (20%)
Query: 488 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRF-IVQGLVVVAKN 546
N +MG +DET L Q+F+Q+S + ++ + ++ G V+VAK+
Sbjct: 8 NSEVLMGGIDETGLLEENQIFIQVSK------------HTKENNKPAYEVITGRVMVAKH 55
Query: 547 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIP 606
P +HPGD+R+L+AV++P L + + V+F Q G RP N SGSDLDGD + +CWD L
Sbjct: 56 PVIHPGDLRMLEAVDLPELRGVKNVVLFSQHGHRPVTNMMSGSDLDGDEFAICWDRRLFL 115
Query: 607 PQQDPPMDY---TPAQSMQLDHDVQIED--------VEEYFTNYIVNDSLGIIANAHTVF 655
P+ M Y +P ++ L V E+ + +F N+ ND+LG I+ ++
Sbjct: 116 PKTVEAMSYDSHSPDETGLLPLSVLEEEFGVTTNEALVRHFINHAKNDNLGKIS---MLW 172
Query: 656 ADREPRK--ARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYV-KEYP--DFMEKP-DKP 709
D K A CL+LA SI+VDFPK+ +PA++P L + +P + EK P
Sbjct: 173 LDHAIDKGSASCSECLELAALHSISVDFPKSSIPAKLPDRLVLGSTFPRAHWREKAGGSP 232
Query: 710 TYESQNVIGKLFRAV----------------------KDIAP------HTSCIRLFTKEV 741
++ ++++G+L+ V KD + I +E
Sbjct: 233 SFHCRSIVGRLYDNVLHELKVMSDQDESSFNWGGGSDKDAMAGRYRDRNGQIIMQGNEEK 292
Query: 742 ARRS----YDPDM------EVDG----FEDH---IDDAIYHKGNYDYKLGNLMDYYGIKT 784
R+ +DP + +DG ++ H +D A+ + +++ +L LM+ Y IK+
Sbjct: 293 ILRAKKSLFDPSLVHRLGWSMDGKSQDYDLHRCLLDFALEQRNDFEDELVELMNQYHIKS 352
Query: 785 EAEILTGSIMKMSKSFTKRR--DAEAIGMAVRA 815
E E++TG +++ K ++R +E + M R+
Sbjct: 353 EGEVVTGCVLEYHKLHQRKRYDASEQVKMRFRS 385
>gi|302678369|ref|XP_003028867.1| hypothetical protein SCHCODRAFT_236896 [Schizophyllum commune H4-8]
gi|300102556|gb|EFI93964.1| hypothetical protein SCHCODRAFT_236896 [Schizophyllum commune H4-8]
Length = 711
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 110/402 (27%), Positives = 180/402 (44%), Gaps = 67/402 (16%)
Query: 228 KFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKE 287
K+ +L F+ SQL++ + + T + +GN + I +
Sbjct: 85 KYSWLGFTESQLKDGTFLLLREDEHWTVDRFLDALGNVKSIPD----------------- 127
Query: 288 TLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYG 347
+ + IPD + G +F+DG G + A +V S + ++ + FQIR G
Sbjct: 128 ------ELVATIPDFQATDGT---LFTDGCGLIRDSCAAEVCSALEIPEDT-TVFQIRRG 177
Query: 348 GYKGVVAADPT-------------SSKKLSLRDSMRKYESELTKLDVLAWSKY-QPCFLN 393
G KG++ P K++LR SMRKY T L++ + ++ + LN
Sbjct: 178 GVKGLLVRYPDVVFDRICRDAGRRGPMKIALRPSMRKYPGGPTVLEIHSVARRPRSARLN 237
Query: 394 RQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI---LKEL 450
R I LL TLG+ E FE R + +D I+T +A +ALE + L +L
Sbjct: 238 RHFIILLLTLGVRLEAFESLLRANLEFIDLIMTSRQRALDALEAELDADGAGFDQELHDL 297
Query: 451 LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQ 510
L+ G++ +EP + +L+ + L LR K I + N + G DE L G+V++
Sbjct: 298 LLAGFQL-SEPHVRCLLERLQKRSLDVLRKKLNIRVKNSFYLFGVCDELGVLREGEVYIN 356
Query: 511 ISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD 570
++G + G V+V +NP +RVL+AVN P L H+ +
Sbjct: 357 VAGD---------------------VKLGTVLVGRNPAYSTSVLRVLQAVNRPGLSHLRN 395
Query: 571 CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPP 612
C+VF G R ++ G D+DGD ++V + LIPP+ P
Sbjct: 396 CIVFASGGARSETSKMQG-DVDGDNFWVTTEPSLIPPRMAEP 436
>gi|336378304|gb|EGO19462.1| hypothetical protein SERLADRAFT_478899 [Serpula lacrymans var.
lacrymans S7.9]
Length = 496
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 111/384 (28%), Positives = 179/384 (46%), Gaps = 48/384 (12%)
Query: 467 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLF 526
L L EL+ + I +P +++G DE L G+++ +
Sbjct: 47 LHCASTHALRELKYRAHIAVPGSYTLLGVSDEWGCLREGEIYATVQ-------------- 92
Query: 527 SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNEC 586
R+ ++G VV+ ++P +HPGD++ + AV P L H+ + VVF +G R +
Sbjct: 93 -DERTGLYKPIEGPVVITRSPQVHPGDLQFVTAVRRPELSHLTNVVVFSCEGDRSLASCL 151
Query: 587 SGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLG 646
+G DLDGD + + D+ L P + P Y Q I DV ++ NYI +D +G
Sbjct: 152 AGGDLDGDDFNLILDEALFPEKVAMPGAYDSLPIKQTTSPCGISDVVDFVMNYIESDLIG 211
Query: 647 IIANAHTVFAD-REPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIP--PHLYVKEYPDFM 703
I+ H FAD ++P CL+LA+ S AVD+PKTG P ++ P L KE PDF+
Sbjct: 212 YISILHLRFADIKDP---GCNECLKLAQFASHAVDYPKTGSPVKMQDLPQLPGKERPDFL 268
Query: 704 EKP-----DKPTYESQNVIGKLFRAV-----------KDIAPH-TSCIRLFTKEVARRSY 746
+ + Y+SQ ++GKL+R V +D +P IR R
Sbjct: 269 AREGANLQGEDFYQSQKLLGKLYRRVPVSEWIPVPWNRDYSPSDGGVIRDTLMRFNFRQL 328
Query: 747 D-PDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIK-------TEAEILTGSIMKMSK 798
D P ++ +D I++ Y +Y +L + + I +EAE+++G+IM
Sbjct: 329 DLPSLDTPS-DDLIEEMGYLLEDYSEQLLVIAKTHTISRHKDIYVSEAELVSGTIMANWS 387
Query: 799 SFTKRRDA-EAIGMAVRALRKEAR 821
KRR+A A+ + + L K R
Sbjct: 388 DHRKRREAIGAMNLQTQVLAKNIR 411
>gi|290993091|ref|XP_002679167.1| RNA dependent RNA polymerase [Naegleria gruberi]
gi|284092782|gb|EFC46423.1| RNA dependent RNA polymerase [Naegleria gruberi]
Length = 1235
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 140/543 (25%), Positives = 238/543 (43%), Gaps = 101/543 (18%)
Query: 298 IIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNP------------------- 338
+IPD++ + + F+DG G +S + A+KV +N
Sbjct: 340 VIPDIE----RDGFNFTDGCGFISPDMAKKVYKHILNAENRVLIKTDQEEDEIGYDEQRG 395
Query: 339 ----------PSAFQIRYGGYKGVVAADPTSSKK----LSLRDSM------RKYESELTK 378
PSAFQIR+ G KG++ + + +K + LR+SM K + +
Sbjct: 396 FDLFSDSSYIPSAFQIRFRGAKGMLVVNTETFEKYRVHIVLRESMVKCKTNEKVDQSFST 455
Query: 379 LDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK--AQEALE 436
L ++ S PC L R +++ L D E ++R + A + + L E E
Sbjct: 456 LQIVGHS--SPCELTRVNSTIMHLLSGCDSNGEVRKR-VLEMASAHVQNSLDKYVHEDTE 512
Query: 437 LMSPG--ENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMG 494
+++ ++ N++ ++ K FL A L T +I N R + G
Sbjct: 513 VIARQYMKDNNLISLNVLSTTKNKGFAFL--------AGPYKSLITSLKIPFSNSRRLYG 564
Query: 495 CLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDV 554
+D LN G+VFVQIS F + +Q ++Q +V+ K PCLH GD+
Sbjct: 565 VVDPYEVLNEGEVFVQISS------------FKNPSHKQ--VLQKEIVLTKEPCLHRGDL 610
Query: 555 RVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMD 614
R +KAV P L H+ D +VF KG RP PN SGSDLDGD +FVCWDD ++ D
Sbjct: 611 RKIKAVYYPKLSHLCDVIVFSSKGKRPVPNMISGSDLDGDQFFVCWDDLIV----DNVKI 666
Query: 615 YTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGI---IANAHTVFADREPRKARSEPCLQL 671
+ P D +++ ED+ F + D +G+ + H ++ + ++ +L
Sbjct: 667 FEPG---LFDEEIKQEDIRP-FEPDVFKDWVGVRHAYVDHHG--SNWTNDENWNKEMRRL 720
Query: 672 AEKFSIAVDFPKTGVPAEIPPHLYVK------EYPDFMEKPDKPTYESQNVIGKLFRAVK 725
E + AV PK GV + ++ YP + + +S ++ ++++ +
Sbjct: 721 CEIVNHAVGSPKNGVISVATREEDLRFIDNFPGYPHYHQSKRGALKKSSSLASEVYQQMV 780
Query: 726 DIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTE 785
D CI TK + + ++ + V +DHI ++I + +D L N + +G K
Sbjct: 781 D------CI---TKTLELKEHNIRISVQNDKDHILESIRLEI-FDLLLANTSNNFGEKIM 830
Query: 786 AEI 788
+I
Sbjct: 831 KKI 833
>gi|406693965|gb|EKC97304.1| hypothetical protein A1Q2_08384 [Trichosporon asahii var. asahii
CBS 8904]
Length = 945
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 142/559 (25%), Positives = 239/559 (42%), Gaps = 96/559 (17%)
Query: 136 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE-DLDKIHSTD 194
LD+ V V+ VTP+R+ P + S +R+ D FLR+ FIDE D +++ T
Sbjct: 278 LDENSVVVYHCLVTPTRLVLLPPGVETSTDAIRNHLSFSDRFLRVEFIDEEDGFQVNPTV 337
Query: 195 LSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS--RYG 252
L + T R+ + NG+ I R + FLA+ ++ R+ S W A
Sbjct: 338 LEADQMEPAEGT----VARVRRAMMNGLNIAGRHYVFLAYGATSARQQSCWFLAEDPAKN 393
Query: 253 LTAAEIREWMG-NFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDV-KIEIGKTK 310
LT ++ +G + VA++ +++ I+PD+ + +
Sbjct: 394 LTVESVKRNLGLDLLRDTTVARFVSKMAI-----------------ILPDILHADQQEKG 436
Query: 311 YVFSD-GIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSM 369
Y SD G ++SA V K +++ S+++ R S
Sbjct: 437 YCESDAGRTEISA-----VEDKESMEN----------------------ISEEVYFRQSQ 469
Query: 370 RKYESELTKLDV-LAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 428
KY + + L +++ L+RQ + +++ LG+ D +FE A+R+ +L
Sbjct: 470 VKYRTGSKTMAYGLNIVEFKRAHLSRQAVVIMNHLGVPDAVFESLFILAMREARGLLKRS 529
Query: 429 LKA---QEALELMSPGENTNI-LKELLICGYKPDAEPFLSMMLQTFRASK---LLELRTK 481
A +E L L+S ++T+ + EL G+K D M+L RA+ L + R
Sbjct: 530 ATAGLLKEDLSLVS--QHTHFPVSELYSFGFKTD-----PMLLDICRATAVRLLSDYRHN 582
Query: 482 TRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLV 541
R+ + +MG DE L+ +VF Q S +V G
Sbjct: 583 ARLQVDQSVKLMGIADELNVLSEHEVFCQYD--------------DPDSSDGPNVVLGAC 628
Query: 542 VVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWD 601
+ ++P LHPGD++++ AV+ P LHH+ + +VF +G S +L GD Y + WD
Sbjct: 629 AIMRDPVLHPGDIQLVHAVDRPELHHLRNVIVFSVQG-----QPLSRGNLAGDQYSLIWD 683
Query: 602 DELIPPQQDPPMDYTPAQSMQLDH--DVQIEDVEEYFTNYIVNDSLGII---ANAHTVFA 656
LIPP+Q P YTP + + D + DV + + I+ +AH A
Sbjct: 684 PVLIPPEQVEPSSYTPPEPATVPKVADKHLRDVGSERAE-LTQKLMAIVEQLCDAHLAIA 742
Query: 657 DREPRKARSEPCLQLAEKF 675
DR +SE C LA++
Sbjct: 743 DR--FGPQSENCKMLADEI 759
>gi|402584478|gb|EJW78419.1| hypothetical protein WUBG_10674, partial [Wuchereria bancrofti]
Length = 355
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 165/354 (46%), Gaps = 71/354 (20%)
Query: 587 SGSDLDGDIYFVCWDDELIPPQQDPPMDYT----PAQSMQLDHDVQIEDVEEYFTNYIVN 642
+GSDLDGD Y V WDD+++ + PMD++ P ++ D V+ ++ ++ Y++
Sbjct: 2 AGSDLDGDEYSVIWDDQMLFSYNEEPMDFSKLVRPPDILKEDEVVR--EMRRFYVEYVMQ 59
Query: 643 DSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAE------------- 689
DS+GIIANA V +D S+ C+ +AEK S +VDFPKTG P +
Sbjct: 60 DSIGIIANAFLVNSD--TFGIASDVCMSIAEKHSQSVDFPKTGQPPKPLVKEWSSRPDGK 117
Query: 690 -IPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVK---DIAPHTSCIRLFTKEVARRS 745
IPP + +PDFM K +P+Y S ++G+LFR ++ D+ TS K +
Sbjct: 118 MIPPE-RPERWPDFMCKTHEPSYVSTRLVGQLFRRIRLIDDVLTITST----HKAQSEVK 172
Query: 746 YDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKM--------- 796
DP +E G+E + +DA+ + Y + LMD YGI+ E ++ +G K+
Sbjct: 173 VDPLLEYIGWESYENDAVLNLTAYSAHIRALMDNYGIEDEYQLYSGCFCKIRNRISDRDG 232
Query: 797 ------SKSFTKRRDAEAIGMAVRA--LRKEARAWFKEKSGSDTED-------------- 834
+ SF R I M R + F + D +
Sbjct: 233 DDMSQFNTSFIIERKLTNIFMCFRCNFFAEFGDFMFCTEQDDDLRNKDVIERRYCKYPTV 292
Query: 835 DAYAKASAWYHVTYHPDYWGCYNQGMNR--DHFLSFPWCVYDRLVEIKKDKTSI 886
+ KASA+Y V CY + M + LSFPW +D L +IKK+ T +
Sbjct: 293 EMKRKASAYYIV--------CYRKAMKEKGERLLSFPWIAWDILADIKKENTML 338
>gi|241168347|ref|XP_002410232.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215494759|gb|EEC04400.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 632
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 106/320 (33%), Positives = 154/320 (48%), Gaps = 44/320 (13%)
Query: 587 SGSDLDGDIYFVCWDDELI-PPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSL 645
+GSDLDGD Y V W+++L P PM ++ + S ++ + ++ NYI ND++
Sbjct: 63 TGSDLDGDEYIVIWEEDLFFPGCNKQPMVFSDSSSTATSNNSL--GMIQFVCNYIKNDNV 120
Query: 646 GIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEK 705
GI++NAH +AD+E S+ CL++A+K S +DF KTG A + +YPDFMEK
Sbjct: 121 GIMSNAHLAWADKEGDGIFSKRCLKIAQKISTCLDFAKTGETASLDRDEKPLQYPDFMEK 180
Query: 706 PD-KPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPD-----MEVDGFEDHI 759
K TY SQ+V+G L+R H S + + R+ D D E G+ DH
Sbjct: 181 GGFKDTYRSQHVLGHLYRL------HRSLEAVVSTNFQDRAADGDGNHALFEYPGWRDHE 234
Query: 760 DDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMS---KSFTKRRDAEA-IGMAVRA 815
+ A Y ++ ++ +GIKTE E+++G I +S KS T + EA + R
Sbjct: 235 ESAQTALAVYGSRMEQILRQHGIKTEGEVVSGIINSVSDYNKSKTDKASVEALVEKQYRD 294
Query: 816 LRKEARAWF-----------KEKSGSDTEDDAYAKASAWYHVTYHPDYW---GCYNQGMN 861
L K R F K + + ASAWY VTY W CY
Sbjct: 295 LVKSTREQFFRDVDAACQSLKVPTEAGKLTVLLQVASAWYMVTY-AGVWQESNCY----- 348
Query: 862 RDHFLSFPWCVYDRLVEIKK 881
SFPW V D L+ + K
Sbjct: 349 -----SFPWSVSDVLLLVMK 363
Score = 46.2 bits (108), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 28/35 (80%), Gaps = 2/35 (5%)
Query: 478 LRTKTRIFIP--NGRSMMGCLDETRTLNYGQVFVQ 510
LRT+TRI +P GR+M+G +DET +L YG+VFVQ
Sbjct: 2 LRTRTRIAVPPNKGRNMLGVVDETYSLEYGEVFVQ 36
>gi|443920944|gb|ELU40764.1| calcium:hydrogen antiporter [Rhizoctonia solani AG-1 IA]
Length = 862
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 115/393 (29%), Positives = 184/393 (46%), Gaps = 51/393 (12%)
Query: 49 GIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLK-EC 107
G +L +E+ F+I L +NG + L + + P ++ + A D L + E
Sbjct: 419 GGSLDFEVAFQIEALFRNGALVPTELLA-----IKPIVEKLAKKSKDQAADALRTFRAEI 473
Query: 108 CYEPSRWLTDQYR--------KYMTSRSKPSSP--AISLDDGLVYVHRVQVTPSRVYFCG 157
+R + + + +S S P I + + V++TP+ V+
Sbjct: 474 QGAGARKSFNDFEDKNVVEEFEVHVRKSAESMPWEKIGISKASFMCYHVKITPTAVHLN- 532
Query: 158 PEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILST 217
SNRV+R + +F+R++F DE D R D T R+
Sbjct: 533 ---EQSNRVIRRYPGYETHFIRVAFTDE-------ADGRARFEYEVD-TMAFTQKRVGKF 581
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESSAWMFA----SRYGLTAAEIREWMGNFREIRNV-A 272
L+N I + DR++E L +S S RE++ + A + IR +GNF ++ + A
Sbjct: 582 LKNAIRLCDREYELLGYSQSGFRENACFFVAPFEWKDEIINGEYIRYSLGNFDKVIDCPA 641
Query: 273 KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV---- 328
+Y AR+ Q+FSS+ ++ + EI I ++K + +FSDG G +S E A+ V
Sbjct: 642 RYGARMSQAFSSTSQSTMLQESEIRHIMELK---NRRDEMFSDGCGTISRELAKDVWKSM 698
Query: 329 -----ASKCGL---KDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESE--LT 377
S+ G + PP AFQIR GG KG+V DP + L LR SM K+E+E L+
Sbjct: 699 LQHLPPSRQGFHHENELPPPAFQIRIGGSKGMVRLDPKLEGRVLCLRPSMTKFEAEHDLS 758
Query: 378 KLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIF 410
A+ Y PCFLNR L+ LL + G+ D++F
Sbjct: 759 LEIARAFVTYSPCFLNRPLVVLLWSGGVEDDVF 791
>gi|290976086|ref|XP_002670772.1| predicted protein [Naegleria gruberi]
gi|284084334|gb|EFC38028.1| predicted protein [Naegleria gruberi]
Length = 1384
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 133/499 (26%), Positives = 218/499 (43%), Gaps = 98/499 (19%)
Query: 286 KETLSVHMDEIEIIPDVKIE---IGKTKYVFSDGIGKVSAEFARKV-----ASKCGLK-- 335
K++L + + +IP + + + + +F+DG G +S E A KV SK LK
Sbjct: 349 KQSLRLALFNTPVIPTIGVSEYTVINDEGLFTDGCGFISLELAMKVYEIVRKSKNLLKYQ 408
Query: 336 ----------------------DNPPSAFQIRYGGYKGVVAADPTSSK----KLSLRDSM 369
+ P A+QIR+ G KG+V P + K L LR SM
Sbjct: 409 SKQSMDEDGIYEENDGVEFLVNEYLPCAYQIRFRGAKGMVYIHPNAEKVYGHHLVLRKSM 468
Query: 370 RKYESELTKLDV---LAWSKYQ-PCFLNRQLISLLSTL-GIWDE-----IFEKKQREAVR 419
K E T D+ L Y PC R +++ L G DE IFE ++A +
Sbjct: 469 MKIEHPNTDDDIINNLCIVGYSSPCDFARINSTIMHILEGCEDETKQGKIFEILNQKACK 528
Query: 420 QLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 479
++ ++ + + + ++ L + + L+ + +R +++L LR
Sbjct: 529 HIENLMKNYISESDIDKVFDQYVKQGDYASLNVLSILKSKK--LAFLTGPYR-NQILSLR 585
Query: 480 TKTRIFIP--NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIV 537
IP + R + G D L GQ+F+Q+S S + +++ ++
Sbjct: 586 ------IPCYSSRRLYGIADPFGVLKEGQIFIQVS--------------SLNDPKKKNVI 625
Query: 538 QGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYF 597
+ V+V K PCLH GD+R L+AVN+P L+ + D +VFP KG RP N +GSDLDGD YF
Sbjct: 626 ENTVIVTKEPCLHRGDLRKLEAVNIPELNFLYDVIVFPTKGSRPITNMIAGSDLDGDQYF 685
Query: 598 VCWDDELIPP--QQDPPM---DYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAH 652
CWD+EL+ + DP DY +S D I D +GI
Sbjct: 686 ACWDNELVESLVEFDPGSFDDDYNETRSFDPD---------------IFKDLIGIRHLFA 730
Query: 653 TVFADREPRKARSEPCLQLAEKFSIAVDFPKTG---VPAEIPPHLYVKEYPDF---MEKP 706
+ ++ RK + +L + A+D PK G V ++++P F +
Sbjct: 731 DFYGNQWSRKYWNN-MERLCTLINRAIDAPKKGNYSVAVNAQDLELLEKFPGFPHYHKNK 789
Query: 707 DKPTYESQNVIGKLFRAVK 725
P S +++GKL+ +++
Sbjct: 790 HGPLRRSVSLVGKLYDSMQ 808
>gi|297738765|emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 203/852 (23%), Positives = 349/852 (40%), Gaps = 161/852 (18%)
Query: 100 KLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVY-FCGP 158
KL +L +E W + RK++ + S D +++ V+P Y F GP
Sbjct: 136 KLKNLPMGVFETEVW-NNLGRKFIKEEDRQRS--FDWDSDKTHIYHCHVSPDGSYRFKGP 192
Query: 159 EINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTL 218
+N + L+ D +N L + F + D++ R S Y +I
Sbjct: 193 YLNKTRTHLQRVLGD-ENILLVKFAE---------DVTDRSSLNCSTDSNASYNKIA--- 239
Query: 219 RNGILIGDRKFEFLAFS-----------SSQLRESSAWMFASRY-GLTAAEIREWMGNFR 266
R GI +G R++ F F +S ++ +M +S G T E R +
Sbjct: 240 REGIFVGLRQYRFFVFKDGGKEEKKKNPTSSVKCYFVFMESSALSGKTVHEARCIFMHAH 299
Query: 267 EIRNVAKYAAR----LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY-------VFSD 315
+ +VAKY AR L ++ + +V++ I+ P + E G Y + +D
Sbjct: 300 MVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEPG-RDEDGHVVYDEDWKPLILTD 358
Query: 316 GIGKVSAEFARKVASK-CGLK-----DNPPSAFQIRYGGYKGVVAADPTSSKKL-----S 364
G G +S + A + + C K ++ P Q R V ++KL
Sbjct: 359 GTGFISEDLALRCPNNLCRGKYMNNGNSDPLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQ 418
Query: 365 LRDSMRKYESELTKLDV-------LAWSKYQP--CFLNRQLISLLSTLGIWDEIFEKKQR 415
+R SM K E++ D + + QP +L++ LI+LLS G+ +E F +
Sbjct: 419 IRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLSYGGVPNEYFMNLLK 478
Query: 416 EAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKL 475
+A+ ++ + +A + L + +I+ +++ G P EPFL L +
Sbjct: 479 DALEDAPSVQSSK-RAALRVSLRFGEMDDSIVTRMILSGI-PIDEPFLHHCLSFMVNEER 536
Query: 476 LELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRF 535
LR ++ + + +MG D T TL +V + + HG+
Sbjct: 537 KGLRV-GKLPVNDCFYLMGTADPTGTLKSDEVCIILD-------HGQ------------- 575
Query: 536 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD----CVVFPQKGMRPHPNECSGSDL 591
VQG V+V K+P LH GD+ VL A V AL V + FP KG R +E + SD
Sbjct: 576 -VQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDF 634
Query: 592 DGDIYFVCWDDEL------------------IPPQQDPPMDYTPAQSMQLDHDVQIEDVE 633
DGD+Y+V + +L +P ++ P D++P +L+H++ +
Sbjct: 635 DGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKR--PTDFSPD---ELEHEL----FQ 685
Query: 634 EYFTN-YIVNDSLGIIANAHTVFADR---------EPRKARSEPCLQLAEKFSIAVDFPK 683
+ T + + ++G+ A+ VF DR + ++ L+L + + A+D PK
Sbjct: 686 LFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPK 745
Query: 684 TGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVAR 743
+G+ + L +++P FM + + +Y S +++G+++ AV+ P TKE+ R
Sbjct: 746 SGMKVNVSKELKAEKFPHFMGR--ESSYHSTSILGQIYDAVESFQPENQS----TKEIWR 799
Query: 744 RSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKR 803
P +D + A Y D Y + A + G K +
Sbjct: 800 L---PLFNIDA----VPQACLRSWKDRY------DQYRSEMAAALQHGGETKDEYA---- 842
Query: 804 RDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRD 863
AE I + L A E+S + E D + +A A YHVTY G R
Sbjct: 843 --AEVINKYKQILYGAAEF---EESPRNLE-DIFDEALAIYHVTYEFVINGA------RV 890
Query: 864 HFLSFPWCVYDR 875
+ +FPW V R
Sbjct: 891 SYCNFPWRVAGR 902
>gi|405974294|gb|EKC38950.1| Putative RNA-dependent RNA polymerase 1 [Crassostrea gigas]
Length = 299
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 128/248 (51%), Gaps = 20/248 (8%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
V +TPSR + R+LR + D F+ + + D+D DK+ + P GS
Sbjct: 27 VRMAVLTPSRFILLPNKPVHLTRILRLYNNDY--FILLDYRDDDFDKV--CGIHPYGSMK 82
Query: 203 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM 262
R + NG I DR ++FL S+S+LR S W F+S G+TA IR+
Sbjct: 83 IVQDMKRFFI-------NGFEIHDRHYDFLGCSNSELRNHSFWFFSSYDGITAEFIRQNC 135
Query: 263 GNFREIRNVAKYAARLGQSFSSSKETLSV-HMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 321
G+ R VA Y +++G FS S TL++ E+ DV+ + F+DGIGK+S
Sbjct: 136 GDLSMERCVASYVSKIGLCFSPSLSTLTMEEHQEVRFEEDVR----RNGLCFTDGIGKIS 191
Query: 322 AEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK---LSLRDSMRKYESELTK 378
A KVA K L + PS FQI YGG KG++A DP+ + L +R SM+K+ES
Sbjct: 192 RRLAAKVAKKMNL-NTVPSVFQICYGGCKGMIALDPSLGENREILVIRHSMKKFESSSKS 250
Query: 379 LDVLAWSK 386
L+VL S+
Sbjct: 251 LEVLQVSR 258
>gi|241636823|ref|XP_002410661.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215503493|gb|EEC12987.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 385
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 152/310 (49%), Gaps = 27/310 (8%)
Query: 588 GSDLDGDIYFVCWD-DELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLG 646
GSDLDGD Y V W+ D P PM ++ + S+ + E + ++ NYI+ND++G
Sbjct: 12 GSDLDGDEYIVIWEPDLFFPGSNKTPMTFSDSSSVGSADENLEEGMIKFICNYIINDNVG 71
Query: 647 IIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEK- 705
I++NAH ++D+ S CL +A+K S VDF KTG+ + + H YPDFMEK
Sbjct: 72 IMSNAHLAWSDQLEDGIFSPLCLGVAKKISTCVDFAKTGLASCLDRHEKPLLYPDFMEKG 131
Query: 706 PDKPTYESQNVIGKLFRAVKDI-APHTSCIRLFTKEVARRSYDPDM-EVDGFEDHIDDAI 763
K TY S+ V+G L+R + + A + T ++A + E G++DH + A
Sbjct: 132 GSKDTYRSKRVLGHLYRLHRSLQAVINTDFMARTGQLAEGDGHCTLFEYPGWKDHQEVAE 191
Query: 764 YHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAV----RALRKE 819
Y ++ ++ YG+ +E E+++G I+ +S D ++ V +L K
Sbjct: 192 KALAAYTVQMSRILHQYGVGSEGEVVSGIIVNVSDYNKSNEDKNSVKALVAKQYASLMKL 251
Query: 820 AR-AWFKEKSGSDTEDDAYAK----------ASAWYHVTYHPDYWGCYNQGMNRDHFLSF 868
R +F + + + + A ASAWY VTY G +++ + SF
Sbjct: 252 TRDTFFSDVTAACNSNGASTDIAKKTILLQMASAWYMVTYA----GVWHE----QNCQSF 303
Query: 869 PWCVYDRLVE 878
PW + +VE
Sbjct: 304 PWPGFRSMVE 313
>gi|268565349|ref|XP_002639417.1| Hypothetical protein CBG04006 [Caenorhabditis briggsae]
Length = 797
Score = 122 bits (306), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 104/393 (26%), Positives = 170/393 (43%), Gaps = 71/393 (18%)
Query: 542 VVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWD 601
+V K P + GD+R+ +AV++P LHH+ D +VFPQ G R P+E +GSDLDGD Y V WD
Sbjct: 1 MVTKFPTMCAGDIRMYEAVDIPELHHLTDVIVFPQSGPRSQPDEMAGSDLDGDEYAVIWD 60
Query: 602 DELIPPQQDPPMDY-TPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREP 660
L + P Y + ++ Q + ++F + + +G+ A H +D+
Sbjct: 61 PILFFQKNAPAFGYCSEKKNKQFTLGEMDHKMNDFFALSMRQEDVGVTAINHLHQSDQ-- 118
Query: 661 RKARSEPCLQLAEKFSIAVDFPKTGVP-------AEIPPHLYVKEYPDFME-KPD----- 707
S+ L EK ++A+DF K+G P I P + E P+ E +PD
Sbjct: 119 FGIDSDVANSLVEKNAMALDFAKSGDPPLPLTNEGRINPETGLWEPPERSERRPDFSQSR 178
Query: 708 ---KPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIY 764
+Y S ++G L R ++ I + +++ D + +G+E H D+A
Sbjct: 179 HAGSASYASSRLLGTLHRELRSI---NDVVMSSSEKQVPVVIDDLLIWEGWEKHKDNATL 235
Query: 765 HKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRR-------DAEAI--GMAVRA 815
Y+ +L ++M+ +G+ TEAE+ +G + ++R + E++ G
Sbjct: 236 QMIRYNGQLRSIMETFGVATEAEVFSGCFRDIRNRQSEREQDDMSMYNTESVIEGQMTDL 295
Query: 816 LRKEARAWFKEKSGSDTEDDAY-------------------------------AKASAWY 844
+K + +F+E + AY AKA A+Y
Sbjct: 296 YKKYRKEFFEEFVTPEARMPAYMRLTEPENVRRNYEEVDVLRRVCKQPSDAMMAKAIAYY 355
Query: 845 HVTYHPDYWGCYNQGM-NRDHFLSFPWCVYDRL 876
V CY M D LSF W YD L
Sbjct: 356 RV--------CYENAMKGSDRKLSFAWIAYDIL 380
>gi|226294787|gb|EEH50207.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 615
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 140/292 (47%), Gaps = 37/292 (12%)
Query: 49 GIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECC 108
G LPY ++F++ LV NG ++ P+ +F V + + ALDKL +
Sbjct: 315 GGDLPYRVMFQLQKLVWNGAIS-PVNAISFAYRVGKELVDADLDVVVQALDKL---ERDI 370
Query: 109 YEPS--------------RWLTDQYRKYMTSRS-KPSSPAISLDDGLVYVHRVQVTPSRV 153
PS + + + R+ S+ I L++ + +HR QVTP +
Sbjct: 371 QWPSPDVQASEVDVVALMKLFANALEIVLRERALSRSNRQIHLNN--ILIHRAQVTPCGI 428
Query: 154 YFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTR 213
Y GP++ NRVLR + ++D+FLR+ F+DE D I R S + +R
Sbjct: 429 YLYGPQLETKNRVLRIYEANVDHFLRVEFVDESGDPI-------RYDSRASVDAI-FQSR 480
Query: 214 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYGL-TAAEIREWMGNFREIR 269
L+ GI I RKFEFL FS S LR + W F S L A I + +G F I
Sbjct: 481 FKGVLKEGITIAGRKFEFLGFSHSSLRSQTCWFVAPFVSGGTLYNATVIIQNLGRFDHIH 540
Query: 270 NVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 321
+ AK AAR+GQ+FS + ++ + D + + DV+ + VFSDG+G +S
Sbjct: 541 SPAKQAARIGQTFSDTLTSIPISFDMLSVGEDVE----RNGRVFSDGVGTIS 588
>gi|134077480|emb|CAK40045.1| unnamed protein product [Aspergillus niger]
Length = 377
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 105/191 (54%), Gaps = 6/191 (3%)
Query: 540 LVVVAKNPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRPHPNECSGSDLDGDIY 596
+V+V ++P LH GD++ + V P H + + +VF KG R P++ SG DLDGDI+
Sbjct: 1 MVLVTRSPALHDGDIQFAQNVIPPDNHPLAELTNSIVFSSKGYRDLPSQLSGGDLDGDIF 60
Query: 597 FVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFA 656
V WD + P + P DY + + V+ +D+ ++F +++ D LG+IA H + A
Sbjct: 61 NVIWDTDAYPVRTFAPADYPRVSPVDIGRPVERDDMAQFFLDFMKTDHLGVIATRHMIMA 120
Query: 657 DREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEY-PDFMEKPDKPTYESQN 715
D+E C +LA+ S AVDF KTG+P ++ K + PD P Y S+
Sbjct: 121 DQEAEGTSHPVCRKLAQLHSTAVDFSKTGIPVQMSEIPKGKPFRPDLY--PFHKYYRSEK 178
Query: 716 VIGKLFRAVKD 726
++GKL+R V +
Sbjct: 179 ILGKLYRGVDE 189
>gi|401412157|ref|XP_003885526.1| hypothetical protein NCLIV_059230 [Neospora caninum Liverpool]
gi|325119945|emb|CBZ55498.1| hypothetical protein NCLIV_059230 [Neospora caninum Liverpool]
Length = 1367
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 126/527 (23%), Positives = 215/527 (40%), Gaps = 131/527 (24%)
Query: 139 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN--FLRISFIDEDLDKIHSTDLS 196
G+ +H + TP +V G + +RV R + R++ +R++F++ED
Sbjct: 524 GIPVLH-LLATPLKVLVRGIYCELGSRVTRQYAREVATGLLVRVAFVEEDG--------R 574
Query: 197 PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF--ASRYGLT 254
P SS + R+ + G+ +G +++F A S SQLRE WM + L+
Sbjct: 575 PMSSSLHRAQDESLQERMRLMMVGGLSVGHERYKFFAASLSQLREGCCWMIRVSGDTRLS 634
Query: 255 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK----------- 303
A I +G F + RLG FSS+ + + +E+ +IPDV
Sbjct: 635 AEAILSRLGVFDSSISPGVLTKRLGVCFSSTLPAIDIRDEEMLLIPDVTSSAAAPTAREE 694
Query: 304 ---------------IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGG 348
+ + ++VF+DG G +S + R++ ++ SAFQIR GG
Sbjct: 695 AAENEGRQARARPIPLAVDSPEFVFTDGSGAISLDLWRRIVARLPALHTS-SAFQIRLGG 753
Query: 349 YKGVVAADPT-----------SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLI 397
KG++ P S K + + SM+K+ S L+V +S+ P +LNRQ+I
Sbjct: 754 IKGMLVLHPAFPRPVPHHPAESLKHILVSQSMQKFHSSSRCLEVNDFSRRFPYYLNRQVI 813
Query: 398 SLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKP 457
LL TLG+ +FE+ Q+ ++ L + T A + L ++ +N + +C
Sbjct: 814 LLLDTLGVGFPVFERLQKRMLQFLRDVDTR-AGAIKFLSTLAIDQNLGMSSFAQVC---- 868
Query: 458 DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYG------------ 505
+ LR + G ++ G D T +L Y
Sbjct: 869 ---------------LDFIALRGR-------GANLFGVPDFTHSLAYDHGWRSSPSARVF 906
Query: 506 ----QVFVQIS---------------GAGYRQLHGESSLFSSSRSRQRF----------- 535
+VFV ++ G L E+ + R+R+R
Sbjct: 907 AGLPEVFVHVTRSPFSDEGMARHVAVATGKSWLSAEADA-QAERARRRLGRFPGGSVAAF 965
Query: 536 ---IVQGLVVVAKNPCLHPGDVRVLKAV-------NVPALHHMVDCV 572
++QG+V V +NPCL PGD+++ AV + P L + C+
Sbjct: 966 GSEVIQGVVAVCRNPCLFPGDIQLCFAVAHGDLPDDSPLLRPLTGCL 1012
>gi|397621217|gb|EJK66181.1| hypothetical protein THAOC_12913, partial [Thalassiosira oceanica]
Length = 906
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 169/366 (46%), Gaps = 35/366 (9%)
Query: 137 DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF----RRDIDNFLRISFIDEDLDKIHS 192
DD V + RV ++P R+ + +SNR +R F + F+R++ DE+ DK+
Sbjct: 557 DDFCVSLPRVLLSPLRLSITAFQSEMSNRFVRLFINRHKFSESAFVRLTIGDENGDKLFG 616
Query: 193 TDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG 252
+LS ++ RI + G+ +G + + FLA+SSSQL+E S W+ + G
Sbjct: 617 GELS-----------RQVEERIRQLILQGVRLGGKTYHFLAYSSSQLKEQSMWLVCAERG 665
Query: 253 LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHM----DEIEI---IPDVKIE 305
+ +R+ MG+F + +KYAAR+GQ FS++ T+S D + + +PD+
Sbjct: 666 WSVDSMRDLMGDFSMCESPSKYAARVGQCFSTTV-TVSTRSHRRNDGLRVKDDLPDIPSS 724
Query: 306 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPP------SAFQIRYGGYKGVVAADPTS 359
I V SDG G + E K S L P SA Q R GG KGV+ +
Sbjct: 725 I--ESLVHSDGCGLIRHEVLLK--SVLPLVPYAPRFKSDISAIQFRCGGAKGVLVGWDFN 780
Query: 360 SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 419
+ + D + ++ +Q RQ+I L + LGI E+F Q E +
Sbjct: 781 TLGIQNYDVCLRPSQGVSICMRGIGGTHQLGIDWRQVILLGTHLGISGEVFLSLQDEMMS 840
Query: 420 QLDAILTDPLKAQEALELMSP--GENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLE 477
L+ +L D A + + + E L ++L G KP +PFL L R+ L+
Sbjct: 841 SLNRMLVDARFAAQYVPFIGGIDAEIVTSLCDMLASGLKPSRDPFLYSCLHATRSHHLMG 900
Query: 478 LRTKTR 483
LR K R
Sbjct: 901 LRKKAR 906
>gi|317031168|ref|XP_001392956.2| hypothetical protein ANI_1_2224074 [Aspergillus niger CBS 513.88]
Length = 1206
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 34/222 (15%)
Query: 539 GLVVVAKNPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRPHPNECSGSDLDGDI 595
G+V+V ++P LH GD++ + V P H + + +VF KG R P++ SG DLDGDI
Sbjct: 797 GMVLVTRSPALHDGDIQFAQNVIPPDNHPLAELTNSIVFSSKGYRDLPSQLSGGDLDGDI 856
Query: 596 YFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVF 655
+ V WD + P + P DY + + V+ +D+ ++F +++ D LG+IA H +
Sbjct: 857 FNVIWDTDAYPVRTFAPADYPRVSPVDIGRPVERDDMAQFFLDFMKTDHLGVIATRHMIM 916
Query: 656 ADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEY-PDFME---------- 704
AD+E C +LA+ S AVDF KTG+P ++ K + PDFM
Sbjct: 917 ADQEAEGTSHPVCRKLAQLHSTAVDFSKTGIPVQMSEIPKGKPFRPDFMALGPVARIHNK 976
Query: 705 --------------------KPDKPTYESQNVIGKLFRAVKD 726
+P Y S+ ++GKL+R V +
Sbjct: 977 SDIELEEYVIQAAYDEDDDMEPFHKYYRSEKILGKLYRGVDE 1018
>gi|290988738|ref|XP_002677050.1| predicted protein [Naegleria gruberi]
gi|284090655|gb|EFC44306.1| predicted protein [Naegleria gruberi]
Length = 553
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 154/592 (26%), Positives = 248/592 (41%), Gaps = 159/592 (26%)
Query: 104 LKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLV----YVHRVQVTPSRVYFCGPE 159
L +C Y S+ L YR +T K D+ V + RV+ T + F E
Sbjct: 54 LTQCLYHFSQQL---YRHVVTE--KKCHTLFKFDESAVKQTELIRRVKSTNLKS-FEFAE 107
Query: 160 INVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLR 219
I+ N+V R++ ID F+R+ F DE R T + +TL+
Sbjct: 108 IDY-NKVFRYY--GIDKFIRVDFEDE-----------------------RDSTVMQTTLK 141
Query: 220 NGILIGDRKFEFLAFSSSQLRESSAWMFASR--------YGLTAAEIREWMGNFREIRNV 271
L G + F+ + SSS L E + +G+ A+EI +
Sbjct: 142 GFCLYG-QMFKPIGASSSLLSERGVYFTCEEDPMKMMDIFGIYASEIETKI--------- 191
Query: 272 AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASK 331
AR +F+S+KET+ VH + +I D+ GK + SDGIG +S FA+ V
Sbjct: 192 ----ARQCLNFTSTKETIRVH--KYIVIDDINSRDGKG--IVSDGIGMISYSFAKAVC-- 241
Query: 332 CGLKDNP--------PSAFQIRYGGYKGVVAADP---TSSKKLSLRDSMRKYESE--LTK 378
C L+D P AFQIR+ G+KG++ P + ++ LR+SM+K+E K
Sbjct: 242 CSLRDQSIDGKYVHIPRAFQIRFLGFKGMLTVCPDKIMNGNQIILRESMKKFEGNPLFNK 301
Query: 379 LDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL 437
L+++ ++ +NRQ+I LLS+L + DE+F Q++A+ +
Sbjct: 302 LEIVEGLNESDTANINRQIIILLSSLQVKDEVFLNAQKKALARNKC-------------- 347
Query: 438 MSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLD 497
+ D E FRA ++ + KT+ F+ + G LD
Sbjct: 348 ------------------RNDEE---------FRA-RIKNAKEKTKFFMKDSVIAKGILD 379
Query: 498 ETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 557
ET+ L QV V I+ G R + G V+V +NP LHP DVR+
Sbjct: 380 ETKQLKDNQVIV-ITKNG-RMVPGGKK----------------VIVFRNPGLHPRDVRIF 421
Query: 558 KAVNVPALH-----HMVD----CVVFPQKGMRPH-PNECSGSDL---------DGDIYFV 598
+ V++P + H VD ++F + + P E L DGD +F
Sbjct: 422 ETVSIPDYYQKWFGHEVDLKGSVIIFAADCQQHNIPGELGNFHLFSISNLQFKDGDRFFT 481
Query: 599 CWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIAN 650
W+ E+IP Q ++ A + H ++ D+++ + N S ++ N
Sbjct: 482 SWNTEIIPQAQYIQSWWSKAN--EFGHTLKQFDLKKCVNTALSNFSHHLLKN 531
>gi|401885543|gb|EJT49653.1| hypothetical protein A1Q1_01210 [Trichosporon asahii var. asahii
CBS 2479]
Length = 957
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 134/536 (25%), Positives = 226/536 (42%), Gaps = 96/536 (17%)
Query: 159 EINVSNRVLRHFRRDIDNFLRISFIDE-DLDKIHSTDLSPRGSSATDITRTRIYTRILST 217
E+ S +R+ D FLR+ FIDE D +++ T L + T R+
Sbjct: 313 EVETSTDAIRNHLSFSDRFLRVEFIDEEDGFQVNPTVLEADQMEPAEGT----VARVRRA 368
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESSAWMFAS--RYGLTAAEIREWMG-NFREIRNVAKY 274
+ NG+ I R + FLA+ ++ R+ S W A LT ++ +G + VA++
Sbjct: 369 MMNGLNIAGRHYVFLAYGATSARQQSCWFLAEDPAKNLTVESVKRNLGLDLLRDTTVARF 428
Query: 275 AARLGQSFSSSKETLSVHMDEIEIIPDV-KIEIGKTKYVFSD-GIGKVSAEFARKVASKC 332
+++ I+PD+ + + Y SD G ++SA V K
Sbjct: 429 VSKMAI-----------------ILPDILHADQQEKGYCESDAGRTEISA-----VEDKE 466
Query: 333 GLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDV-LAWSKYQPCF 391
+++ S+++ R S KY + + L +++
Sbjct: 467 SMEN----------------------VSEEVYFRQSQVKYRTGSKTMAYGLNIVEFKRAH 504
Query: 392 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA---QEALELMSPGENTNI-L 447
L+RQ + +++ LG+ D +FE A+R+ +L A +E L L+S ++T+ +
Sbjct: 505 LSRQAVVIMNHLGVPDAVFESLFILAMREARGLLKRSATAGLLKEGLSLVS--QHTHFPV 562
Query: 448 KELLICGYKPDAEPFLSMMLQTFRASK---LLELRTKTRIFIPNGRSMMGCLDETRTLNY 504
EL G+K D M+L RA+ L + R R+ + +MG DE L+
Sbjct: 563 SELYSFGFKTD-----PMLLDICRATAVRLLSDYRHNARLQVDQSVKLMGIADELNVLSE 617
Query: 505 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 564
+VF Q S +V G + ++P LHPGD++++ AV+ P
Sbjct: 618 HEVFCQYD--------------DPDSSDGPNVVLGACAIMRDPVLHPGDIQLVHAVDRPE 663
Query: 565 LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLD 624
LHH+ + +VF +G S +L GD Y + WD LIPP+Q P YTP + +
Sbjct: 664 LHHLRNVIVFSVQG-----QPLSRGNLAGDQYSLIWDPVLIPPEQVEPSSYTPPEPATVS 718
Query: 625 H--DVQIEDVEEYFTNYIVNDSLGII---ANAHTVFADREPRKARSEPCLQLAEKF 675
D DV + + I+ +AH ADR +SE C LA++
Sbjct: 719 KVTDKHFPDVGSERAE-LTQKLMAIVEQLCDAHLAIADR--FGPQSENCKMLADEI 771
>gi|67537240|ref|XP_662394.1| hypothetical protein AN4790.2 [Aspergillus nidulans FGSC A4]
gi|40741170|gb|EAA60360.1| hypothetical protein AN4790.2 [Aspergillus nidulans FGSC A4]
Length = 854
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 154/337 (45%), Gaps = 73/337 (21%)
Query: 161 NVSNRVLRHFRRDIDNFLRISFID-EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLR 219
++SN V+R + DNFLR+ F D + + +IH+T D T + TRI L
Sbjct: 232 DISNCVIRRYANLADNFLRVRFTDAKHIGRIHAT---------VDNTMDEVLTRIKRALA 282
Query: 220 NGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLG 279
NGI IG ++EFLAF +S F R ++ A
Sbjct: 283 NGITIGSTRYEFLAFGNSS------------------------SCFSTTRAISGCTA--- 315
Query: 280 QSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---D 336
H+ +I+ +I Y+FSDG+G++S A+ V S+ +K
Sbjct: 316 ------------HVKKID-------DIEGNGYIFSDGVGRISKFLAQIVKSELKIKTPTK 356
Query: 337 NPPSAFQIRYGGYKGVVAADPTSS-KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQ 395
PPSA+Q R G KG++ P + +++ +R S K+ + L+++ WS++ LNRQ
Sbjct: 357 EPPSAYQFRLVGCKGMLIVFPQARPQEVHIRKSQFKFAALSQGLEIIRWSQFTVASLNRQ 416
Query: 396 LISLLSTLGIWDEIFEKKQREAVRQLD-AILTDPLKA----------QEALELMSP--GE 442
LI +LSTLGI D++F K + +R LD A+ +DP A Q L + P GE
Sbjct: 417 LILVLSTLGITDKVFHLKLKTMLRNLDEAMESDPKAAHLLRKYVDPNQVTLTIYLPKNGE 476
Query: 443 NTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 479
I++ + I P P +++ A L L+
Sbjct: 477 KYEIIEGICILARNPSLHPGGIRVVRAVNAPGLHHLK 513
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 53/71 (74%)
Query: 536 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDI 595
I++G+ ++A+NP LHPG +RV++AVN P LHH+ D VV P+ G R + CSGSDLDGD
Sbjct: 480 IIEGICILARNPSLHPGGIRVVRAVNAPGLHHLKDIVVLPRTGDRDIASMCSGSDLDGDD 539
Query: 596 YFVCWDDELIP 606
+ V WD +L+P
Sbjct: 540 FLVIWDQDLLP 550
>gi|119370384|gb|ABL68089.1| putative RNA-directed RNA polymerase 2 [Nicotiana attenuata]
Length = 108
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 76/107 (71%), Gaps = 1/107 (0%)
Query: 275 AARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL 334
AAR+GQ FS+S +T+ V +EI+PD+++ Y FSDGIGK+S FA +VA KCGL
Sbjct: 1 AARMGQLFSTSFQTMEVQSPHVEILPDIEVTSDGVSYCFSDGIGKISQAFASQVAQKCGL 60
Query: 335 KDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDV 381
PSAFQIRYGGYKGV+A D S +KLSLR SM K+ES+ L++
Sbjct: 61 -SYTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFESKNRMLNI 106
>gi|259482364|tpe|CBF76776.1| TPA: RNA-directed RNA polymerase (Sad-1), putative (AFU_orthologue;
AFUA_3G06790) [Aspergillus nidulans FGSC A4]
Length = 869
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 154/337 (45%), Gaps = 73/337 (21%)
Query: 161 NVSNRVLRHFRRDIDNFLRISFID-EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLR 219
++SN V+R + DNFLR+ F D + + +IH+T D T + TRI L
Sbjct: 247 DISNCVIRRYANLADNFLRVRFTDAKHIGRIHAT---------VDNTMDEVLTRIKRALA 297
Query: 220 NGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLG 279
NGI IG ++EFLAF +S F R ++ A
Sbjct: 298 NGITIGSTRYEFLAFGNSS------------------------SCFSTTRAISGCTA--- 330
Query: 280 QSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---D 336
H+ +I+ +I Y+FSDG+G++S A+ V S+ +K
Sbjct: 331 ------------HVKKID-------DIEGNGYIFSDGVGRISKFLAQIVKSELKIKTPTK 371
Query: 337 NPPSAFQIRYGGYKGVVAADPTSS-KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQ 395
PPSA+Q R G KG++ P + +++ +R S K+ + L+++ WS++ LNRQ
Sbjct: 372 EPPSAYQFRLVGCKGMLIVFPQARPQEVHIRKSQFKFAALSQGLEIIRWSQFTVASLNRQ 431
Query: 396 LISLLSTLGIWDEIFEKKQREAVRQLD-AILTDPLKA----------QEALELMSP--GE 442
LI +LSTLGI D++F K + +R LD A+ +DP A Q L + P GE
Sbjct: 432 LILVLSTLGITDKVFHLKLKTMLRNLDEAMESDPKAAHLLRKYVDPNQVTLTIYLPKNGE 491
Query: 443 NTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 479
I++ + I P P +++ A L L+
Sbjct: 492 KYEIIEGICILARNPSLHPGGIRVVRAVNAPGLHHLK 528
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 53/71 (74%)
Query: 536 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDI 595
I++G+ ++A+NP LHPG +RV++AVN P LHH+ D VV P+ G R + CSGSDLDGD
Sbjct: 495 IIEGICILARNPSLHPGGIRVVRAVNAPGLHHLKDIVVLPRTGDRDIASMCSGSDLDGDD 554
Query: 596 YFVCWDDELIP 606
+ V WD +L+P
Sbjct: 555 FLVIWDQDLLP 565
>gi|225445110|ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 202/866 (23%), Positives = 346/866 (39%), Gaps = 175/866 (20%)
Query: 100 KLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVY----- 154
KL +L +E W + RK++ + S D +++ V+P Y
Sbjct: 136 KLKNLPMGVFETEVW-NNLGRKFIKEEDRQRS--FDWDSDKTHIYHCHVSPDGSYRFKVC 192
Query: 155 ----FCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRI 210
GP +N + L+ D +N L + F + D++ R S
Sbjct: 193 ISSSLNGPYLNKTRTHLQRVLGD-ENILLVKFAE---------DVTDRSSLNCSTDSNAS 242
Query: 211 YTRILSTLRNGILIGDRKFEFLAFS-----------SSQLRESSAWMFASRY-GLTAAEI 258
Y +I R GI +G R++ F F +S ++ +M +S G T E
Sbjct: 243 YNKIA---REGIFVGLRQYRFFVFKDGGKEEKKKNPTSSVKCYFVFMESSALSGKTVHEA 299
Query: 259 REWMGNFREIRNVAKYAAR----LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY--- 311
R + + +VAKY AR L ++ + +V++ I+ P + E G Y
Sbjct: 300 RCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEPG-RDEDGHVVYDED 358
Query: 312 ----VFSDGIGKVSAEFARKVASK-CGLK-----------DNPPSAFQIRYGGYKGVVAA 355
+ +DG G +S + A + + C K P Q R V
Sbjct: 359 WKPLILTDGTGFISEDLALRCPNNLCRGKYMNNGNSDVCDSRYPLLIQCRLFNNGCAVKG 418
Query: 356 DPTSSKKL-----SLRDSMRKYESELTKLDV-------LAWSKYQP--CFLNRQLISLLS 401
++KL +R SM K E++ D + + QP +L++ LI+LLS
Sbjct: 419 TLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLS 478
Query: 402 TLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEP 461
G+ +E F ++A+ ++ + +A + L + +I+ +++ G P EP
Sbjct: 479 YGGVPNEYFMNLLKDALEDAPSVQSSK-RAALRVSLRFGEMDDSIVTRMILSGI-PIDEP 536
Query: 462 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG 521
FL L + LR ++ + + +MG D T TL +V + + HG
Sbjct: 537 FLHHCLSFMVNEERKGLRVG-KLPVNDCFYLMGTADPTGTLKSDEVCIILD-------HG 588
Query: 522 ESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD----CVVFPQK 577
+ VQG V+V K+P LH GD+ VL A V AL V + FP K
Sbjct: 589 Q--------------VQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIK 634
Query: 578 GMRPHPNECSGSDLDGDIYFVCWDDEL------------------IPPQQDPPMDYTPAQ 619
G R +E + SD DGD+Y+V + +L +P ++ P D++P
Sbjct: 635 GPRSLADEMANSDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKR--PTDFSPD- 691
Query: 620 SMQLDHDVQIEDVEEYFTN-YIVNDSLGIIANAHTVFADR---------EPRKARSEPCL 669
+L+H++ + + T + + ++G+ A+ VF DR + ++ L
Sbjct: 692 --ELEHEL----FQLFLTTRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKML 745
Query: 670 QLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAP 729
+L + + A+D PK+G+ + L +++P FM + + +Y S +++G+++ AV+ P
Sbjct: 746 ELTDIYYDALDAPKSGMKVNVSKELKAEKFPHFMGR--ESSYHSTSILGQIYDAVESFQP 803
Query: 730 HTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEIL 789
TKE+ R P +D + A Y D Y + A +
Sbjct: 804 ENQS----TKEIWRL---PLFNIDA----VPQACLRSWKDRY------DQYRSEMAAALQ 846
Query: 790 TGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYH 849
G K + AE I + L A E+S + E D + +A A YHVTY
Sbjct: 847 HGGETKDEYA------AEVINKYKQILYGAAEF---EESPRNLE-DIFDEALAIYHVTYE 896
Query: 850 PDYWGCYNQGMNRDHFLSFPWCVYDR 875
G R + +FPW V R
Sbjct: 897 FVINGA------RVSYCNFPWRVAGR 916
>gi|170579664|ref|XP_001894930.1| RNA-directed RNA polymerase 1 [Brugia malayi]
gi|158598304|gb|EDP36223.1| RNA-directed RNA polymerase 1, putative [Brugia malayi]
Length = 312
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 119/230 (51%), Gaps = 24/230 (10%)
Query: 138 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 197
+G V +V +TP+R+ PE+ + NRVLR F +D + LRI F D+D T L
Sbjct: 72 EGYQRVRKVIITPTRIILVVPELLMGNRVLRTFDKDGNGALRIQFRDDD-----GTPLR- 125
Query: 198 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAE 257
+ I T +TL GI IGDR F +L S+SQ+R++ + + G A +
Sbjct: 126 ----VNTVGLFLIQTTTFNTLSRGIYIGDRHFVYLGSSNSQMRDNGCYFYDDGKGGQAHK 181
Query: 258 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSV-----HMDEIEIIPDVKIEIGKTKYV 312
IRE +G F N+ K +R+GQ F+ +K + + +II + + Y+
Sbjct: 182 IREQLGKFDSC-NIPKMMSRMGQCFTQAKRCKVILKRQKYNKTYDIIGGR--DTNQASYI 238
Query: 313 FSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK 362
FSDG+GKVS EFA K+A GL IR+ G KGV++ DP+ ++
Sbjct: 239 FSDGVGKVSKEFAEKIAFDIGL------GTSIRHRGIKGVLSIDPSLDQR 282
>gi|402579794|gb|EJW73745.1| hypothetical protein WUBG_15348 [Wuchereria bancrofti]
Length = 203
Score = 117 bits (294), Expect = 2e-23, Method: Composition-based stats.
Identities = 68/171 (39%), Positives = 98/171 (57%), Gaps = 12/171 (7%)
Query: 420 QLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 479
QL +L + K +E L + N+ + L G+ EPF +L+ L +L
Sbjct: 34 QLADMLMNEDKCRERLNELP--LRVNVSRLTLARGFALTQEPFFRSLLRAHIKCTLKKLI 91
Query: 480 TKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIV 537
K +I IP GRSM G +DET L +GQ+FVQ + + L + S+S + I+
Sbjct: 92 AKIQIQIPPHLGRSMFGVMDETGQLQWGQIFVQCTRNIW--------LKTPSQSAAKIIL 143
Query: 538 QGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSG 588
+G V++ KNPC+ GDVRV +AV++P LHH+VD VVFPQ G RPHP+E +G
Sbjct: 144 KGKVMLTKNPCIVAGDVRVFEAVDIPELHHLVDVVVFPQHGPRPHPDEMAG 194
>gi|242051713|ref|XP_002455002.1| hypothetical protein SORBIDRAFT_03g002800 [Sorghum bicolor]
gi|241926977|gb|EES00122.1| hypothetical protein SORBIDRAFT_03g002800 [Sorghum bicolor]
Length = 1127
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 145/556 (26%), Positives = 233/556 (41%), Gaps = 98/556 (17%)
Query: 239 LRESSAWMFASRYGLTAAEIREWMGNFREIRN---VAKYAARLGQSFSSSKETLSVHMD- 294
+R S W Y L + + F I N VAKY +R S +T+ + +D
Sbjct: 450 VRMESGWERDYPYKLADYTVNQARRLFMHINNAPTVAKYLSRFALILS---KTIKLDVDF 506
Query: 295 ---EIEIIPD---------VKIEIGKTKYVFSDGIGKVSAEFARKVASKCG----LKDNP 338
++II D + ++ GK + +DG G +S + AR S LKD
Sbjct: 507 SKVNVKIIDDEPCREESGEIAVQDGK-DLIHTDGTGLISVDLARNCPSSIFKGNFLKDAV 565
Query: 339 PSA--------------FQIRYGGY--KGVVAADP-TSSKKLSLRDSMRKY--------E 373
S F++ + GY KG + AD + + +R SM K E
Sbjct: 566 DSKGHQHLTTKHPLLIQFRMFHNGYAVKGTLLADKRLPANTIHIRPSMIKIHGDENSFGE 625
Query: 374 SELTKLDVLAWSKYQP--CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA 431
L+V+ S Y+P F +R LISLL + +E F R A+ ++ P +
Sbjct: 626 KSFNSLEVITTS-YRPKRAFTSRFLISLLHYGRVREEFFLDLLRNALEDVNNARHRPRNS 684
Query: 432 QEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRS 491
E + + ++ +++ G +P+ E +L L + L+ + RI I +
Sbjct: 685 LE-VAFNHADLDDSMSARMILSGIQPEDEAYLQSQLALMAKVERKGLK-EGRIPIDDTYY 742
Query: 492 MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 551
+MG D T TL QV + + QL G+ V+V K+P LH
Sbjct: 743 LMGTTDPTGTLKRDQVCIILDNG---QLSGK------------------VLVYKHPGLHF 781
Query: 552 GDVRVLKAVNVPALHHMVD----CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI-- 605
GD+ +L A + L +V + FP G R +E + SD DGD+Y+V + +L+
Sbjct: 782 GDIHILTATYIDGLEKIVGNSKYAIFFPTCGPRSLADEMANSDFDGDLYWVSRNPQLLEG 841
Query: 606 -PPQQDP--------------PMDYT-PAQSMQLDHD-VQIEDVEEYFTNYIVNDSLGII 648
Q+ P P DYT P L H+ ++ Y N L ++
Sbjct: 842 FTKQRKPWVRRIQPTKTELKKPQDYTGPKLESLLFHEFLRARFTPSYVLGAASNCWLALM 901
Query: 649 ANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDK 708
T + R+A + L L + + +A+D PK G +P L VK+YP FME+ +K
Sbjct: 902 DRLLTGGVPKSERQAIKKKMLDLVDIYYLALDAPKEGNKITVPGELKVKKYPHFMERDEK 961
Query: 709 PTYESQNVIGKLFRAV 724
+Y S +V+GK++ V
Sbjct: 962 KSYTSTSVLGKIYDEV 977
>gi|290988454|ref|XP_002676936.1| predicted protein [Naegleria gruberi]
gi|284090541|gb|EFC44192.1| predicted protein [Naegleria gruberi]
Length = 1745
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 123/486 (25%), Positives = 206/486 (42%), Gaps = 96/486 (19%)
Query: 290 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC----------------- 332
++++ E ++I DV + F+DG G +S + AR++ K
Sbjct: 478 TINISEYQVIEDVGL--------FTDGCGFISPDLAREIYRKIKQAESREKVHVFENAQY 529
Query: 333 ----------------GLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYE--- 373
+ DN PSAFQIR+ G KG++ +P + K + LR+SM K+
Sbjct: 530 MVDVQMIYQDSDPVEDDMDDNVPSAFQIRFRGAKGMLLQNP-NVKGIVLRESMVKFNVDL 588
Query: 374 --------SELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 424
L+ + V+ +S+ F N ++ ++S E FE +
Sbjct: 589 DEDLDEEDESLSNIHVVGYSEPSNFAFANSTILYMMSGCVDGGEKFEGIIMNMWKDYVND 648
Query: 425 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 484
+ ++ +LM L I G D L+ + FR ++LL L+ +
Sbjct: 649 ILKTYSNEDTSQLMKKYFKEGDFHALNIFGLTKDVA--LAFLAGPFR-TQLLNLK----L 701
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 544
I N R + G D L +VFV+I R G ++G + +
Sbjct: 702 PIQNARRVYGVCDPLEVLEPDEVFVRI-----RMEDGTLK-----------TLEGTIAIT 745
Query: 545 KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG-MRPHPNECSGSDLDGDIYFVCWDDE 603
K PCLH GD+R+LKA + +L ++ + +VFP KG RP PN +GSDLDGD Y V WD+
Sbjct: 746 KEPCLHRGDLRLLKAKKIESLEYLSEVIVFPIKGEKRPIPNMITGSDLDGDKYLVIWDEP 805
Query: 604 LIPP--QQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPR 661
L+ QQ P ++ D +IE + F + D +G+ + + +
Sbjct: 806 LVSSFVQQFEPGNF----------DEEIEGEKRNFEPDVFKDWIGLRHSYVDSYGYEWSK 855
Query: 662 KARSEPCLQLAEKFSIAVDFPKTG--VPAEIPPHLYVKEYPDFMEKPDKPTYE----SQN 715
+ +L++ ++AVD PK G A V+ +P + + T E S +
Sbjct: 856 GENWKTMQRLSDIVNMAVDAPKKGKTFKAGAMEKDIVRNFPKYPHFHNSKTKEAVRVSTS 915
Query: 716 VIGKLF 721
V+GK++
Sbjct: 916 VVGKMY 921
>gi|402468935|gb|EJW04011.1| hypothetical protein EDEG_01705 [Edhazardia aedis USNM 41457]
Length = 1964
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 106/203 (52%), Gaps = 43/203 (21%)
Query: 255 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFS 314
A IR+W+G F I+N+ KYA RLGQ+ SS+ T + +D + I D K G Y F+
Sbjct: 1259 ADYIRQWLGTFSTIKNIGKYAIRLGQALSSTIGT--IEIDNLVCIDD-KFFNG---YCFT 1312
Query: 315 DGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVA-------------------- 354
DGIG++ A+KV G+ N PSAFQIR GGYKGVV+
Sbjct: 1313 DGIGRIDYSTAKKVCECLGII-NIPSAFQIRIGGYKGVVSLYKLKNNNEEKKLKNIIYSS 1371
Query: 355 ----------ADPTS------SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLIS 398
D S S L +R+SM+K+ES L+V+A+S+ PC+LNRQ+I
Sbjct: 1372 NTNTNLNSTNIDTNSNISLVQSNSLYVRNSMKKFESTHRTLEVVAFSQNIPCYLNRQIIL 1431
Query: 399 LLSTLGIWDEIFEKKQREAVRQL 421
+L LGI D I + Q + ++
Sbjct: 1432 ILCALGINDNIIIEMQDNYIEKI 1454
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 14/129 (10%)
Query: 121 KYMTSRSKPSSPAISL-DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLR 179
K M + + S+ IS + + VTP + + P + NRVLR F D F+R
Sbjct: 1070 KNMHTNTNKSASNISFWATQNISTRSIIVTPLQQIYTYPTKTLGNRVLRTFNADF--FIR 1127
Query: 180 ISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL 239
+SF DE+L + D + I+ +I ++ G LIG+RK+ FLA S+SQL
Sbjct: 1128 VSFKDENLTSVRKYD-----------SNKFIFEKIRKIMKEGFLIGNRKYFFLAMSASQL 1176
Query: 240 RESSAWMFA 248
+ SAW
Sbjct: 1177 KTHSAWFIC 1185
>gi|253743974|gb|EET00246.1| RNA-directed RNA polymerase, putative [Giardia intestinalis ATCC
50581]
Length = 1989
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 130/496 (26%), Positives = 207/496 (41%), Gaps = 123/496 (24%)
Query: 260 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 319
+W+G E++ K R G F S T+ V ++ IIPD + YVF+DG G+
Sbjct: 428 KWLGTISELQ-ACKICTRRGLCFGKSLPTIKVKEQDVHIIPDRQYH----DYVFTDGAGE 482
Query: 320 VSAEFARKVA-----------------------------SKCGLKD-------------- 336
+S + ++A G +D
Sbjct: 483 ISYDLMLEIAVCLDQIKTEQLNTNRDIGNFSDYNDDNEGEDGGTEDATLDLQTDLKVLSN 542
Query: 337 --NPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKY------ESELTKLDVLAWSKY 387
PSA Q+R+ G KGV+ + + + L S K+ E++ T L+VL +
Sbjct: 543 SIQVPSALQMRWAGAKGVLILNALLPPRTILLHKSQVKFTIPNPTETQQT-LEVLRVAYP 601
Query: 388 QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL---KAQEAL-ELMSPGEN 443
+N Q+I LLS +G+ DE+F + + Q + ++P+ + Q L +L+S
Sbjct: 602 SRGMINMQIIVLLSEMGVPDEVFLNLVHQDL-QKALVFSEPMDRCRHQADLYQLVSRASR 660
Query: 444 TN---ILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETR 500
++ ++ ++L+ G EP L +L + +L ++ R +P+ R ++G D
Sbjct: 661 SSSGKLILQMLMAGVDI-TEPCLQFVLMKLQMMQLRSMKANMRFSVPDSRILIGIYDCFN 719
Query: 501 TLNYGQVFV------------------QISGAGYR---QLHGESSLFSSSRSRQRFIVQG 539
L G+V++ IS A + L +F + V+G
Sbjct: 720 LLKEGEVYIGLQSPLVISKWVASTHLKAISDAQHDTSISLSSHPHIFDMASEFGPSCVEG 779
Query: 540 LVVVAKNPCLHPGDVRVLKAVN--------------VPALHHMVD----------CVVFP 575
VVVAKNPC + GDVRV +AVN VP+L V + FP
Sbjct: 780 RVVVAKNPCFYRGDVRVYQAVNLLERLKREASEKTLVPSLPPFVTQEAIKAMYKGVICFP 839
Query: 576 Q--KGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDV-----Q 628
Q +G RP + SGSDLDGDIY+V WD +I Q +Y PA ++
Sbjct: 840 QYYEG-RPMADCLSGSDLDGDIYWVSWDASIIGTIQ---YEYEPASFQANSGEINTCAPN 895
Query: 629 IEDVEEYFTNYIVNDS 644
+EDVE N + N+S
Sbjct: 896 LEDVEAGLGNLLRNES 911
>gi|297848118|ref|XP_002891940.1| hypothetical protein ARALYDRAFT_892768 [Arabidopsis lyrata subsp.
lyrata]
gi|297337782|gb|EFH68199.1| hypothetical protein ARALYDRAFT_892768 [Arabidopsis lyrata subsp.
lyrata]
Length = 117
Score = 115 bits (289), Expect = 8e-23, Method: Composition-based stats.
Identities = 57/118 (48%), Positives = 75/118 (63%), Gaps = 5/118 (4%)
Query: 40 LVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALD 99
LVP+V PP G LP+EILFK+N LVQN CV GP L FY LV + + I+ AL
Sbjct: 5 LVPVVDPPSGFDLPFEILFKVNALVQNACVPGPALVPKFYELVATHER----NFIDEALA 60
Query: 100 KLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCG 157
KL L ECCY + WL +Y + +++P SL+ +VY+H+V+VTP+RVYFCG
Sbjct: 61 KLRCLNECCYTLASWLKQEYTDW-GKKTQPPRSKESLEGVVVYIHQVKVTPTRVYFCG 117
>gi|391343490|ref|XP_003746042.1| PREDICTED: uncharacterized protein LOC100901929 [Metaseiulus
occidentalis]
Length = 1356
Score = 115 bits (289), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 165/682 (24%), Positives = 283/682 (41%), Gaps = 87/682 (12%)
Query: 227 RKFEFLAFSSSQLRESSAWMFASRYGLT--AAEIREWMGNFREIRNVAKYAARLGQSFSS 284
+ + FL S SQ + S W +A G T + +RE +G N+A+ A F+
Sbjct: 457 KTYYFLGNSKSQAEDFSFWAYAIEKGDTDTISSVRERLGI---TGNLARRIAVQDLVFAE 513
Query: 285 SKETLSVH----MDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPS 340
+ +S+ +E E +P F GIG++S R V C S
Sbjct: 514 ALGAVSIDPSWVSEESEDVPAASD--------FKHGIGRISEAALRTVVENCHWSRTLCS 565
Query: 341 AFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISL 399
A ++ +GG +G + DP+ ++ R S +SE + L ++ S+ + +R IS
Sbjct: 566 AIRVVHGGRRGTLVYDPSLEGSRIIYRKSQTVIKSEDSTLYLIERSEIKNAAFDRTFIST 625
Query: 400 LSTL--GIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL-----I 452
LS+ G+ +E + + L +LT+PL + +L + +
Sbjct: 626 LSSKADGLTEEF---SVEDFLTPLYELLTEPLSLYSTGARVKRVAAEPVLDHIFREGEDL 682
Query: 453 CGYKPDAEPFLSMMLQTFRASKLLELR--TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQ 510
GY + + Q R L LR K + + N +M +DE L G+VF+Q
Sbjct: 683 YGYDKRGD---GLFRQAVRCKALKALRDLKKLKQHMTNAYEIMPVVDELELLEEGEVFIQ 739
Query: 511 ISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP----ALH 566
+ G G+ + S G +V+A+ +H + R + AVN P AL
Sbjct: 740 VCSPG-----GDLRVLS-----------GDLVLARKDAMHLEEFRRVTAVNRPDVVGALG 783
Query: 567 HMVDCVVFPQK-GMRP---HPNECSGSDLDGDIYFVCWDDE---LIPPQQDPPMDYTPAQ 619
H+ +CVV P K G RP E S + I DE + + DPP + A
Sbjct: 784 HLFNCVVLPSKGGSRPLEFLAREASYAGESDIILIASHPDEEPAFLFKRNDPPRSTSIAV 843
Query: 620 SMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAV 679
+D D+E +F NY+ S AD P+ A SE C++ + +
Sbjct: 844 GPAVDSGC---DIETHFFNYLSYVSFNDFEEVFCALADYLPQHASSESCIRAGAQQRLLD 900
Query: 680 DFPKTGVPAEIPPHLYVKEYPDFMEK-PDKPTYESQNVIGKLFRAVKDI-APHTSCIRLF 737
+ + G E P V ++P F+EK D TY S + +++ + I + +
Sbjct: 901 KYRRGG--REGAPLPKVVKFPHFLEKISDGKTYCSTRPLAHIYQKGRAIDTKYFEETLMM 958
Query: 738 TKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMS 797
T +V ++ P+++V+G + + A ++ +LG + + I + E+LTG+I
Sbjct: 959 TDDV---TFQPELQVEGSQVFAEVAERDMRSFKRELGGIAALHEISVD-EVLTGTIFSNR 1014
Query: 798 KSFT---KRRDAEA-IGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYH-PDY 852
++ +R + EA + + V+ L R FK+ +E + K SA+Y + PD
Sbjct: 1015 GQYSSSERRSNIEATVKLQVKHLALICRRRFKKGVEKASEVEVLQKISAYYVASREFPDG 1074
Query: 853 WGCYNQGMNRDHFLSFPWCVYD 874
G +FPW + D
Sbjct: 1075 GG-----------YAFPWMLPD 1085
>gi|297832162|ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329803|gb|EFH60222.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 981
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 166/683 (24%), Positives = 270/683 (39%), Gaps = 139/683 (20%)
Query: 134 ISLDDGLVYVHRVQVTPSRVY-FCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS 192
+ D G + ++ V P Y F GP + + L D +N L + F D
Sbjct: 205 LQWDSGKTHYYQCHVAPDGSYTFKGPLLEHTGTHLHKVLGD-ENVLTVKFAD-------- 255
Query: 193 TDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAF------------SSSQLR 240
P+ SS R Y I +NGI+IG R+++F F S+ +++
Sbjct: 256 ---VPKNSSTYSNDRYFTYKEIA---KNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVK 309
Query: 241 -------ESSAWMFASRYGLTAAEIREWMGNFREIR---NVAKYAARLGQSFSSSKETLS 290
+++ + Y T I E +F + +A Y AR S +K TL
Sbjct: 310 CYFIRTDSTASCDMENPYIFTGKSIHEARMHFMHVHRAPTLANYMARFSLILSKTK-TLE 368
Query: 291 VHMDEIEIIP---------DVKIEIGKTKY--VFSDGIGKVSAEFARKV-----ASKCGL 334
V M I P D K + K K + SDG G +S + AR KC
Sbjct: 369 VDMTGITFDPIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLR 428
Query: 335 KDN--------PPSAFQIR--YGGY--KGVVAADPT-SSKKLSLRDSMRKYE-------- 373
+N PP Q R Y GY KG + + + +R SM K
Sbjct: 429 SENIQEACNQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNF 488
Query: 374 SELTKLDVLAWSKY-QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 432
S L+V+ S + L++ L++LLS GI +E F + + +I + A
Sbjct: 489 STFNALEVVTTSNPPRRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKHAAL 548
Query: 433 EALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 492
++ N + +L+ P EP L L ++ +L+ R+ + +
Sbjct: 549 NVALNYGEMDDQNAAQMILVG--IPLDEPHLKNHLSILLKTEKNDLKA-GRLPVTESYYL 605
Query: 493 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 552
MG +D T L +V V + Q+ GE V+V +NP LH G
Sbjct: 606 MGTVDPTGELKEDEVCVILESG---QISGE------------------VLVYRNPGLHFG 644
Query: 553 DVRVLKAVNVPALHHMVD----CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI--- 605
D+ +LKA V AL V V FPQKG R +E +G D DGD+YF+ + EL+
Sbjct: 645 DIHILKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLEHF 704
Query: 606 ----------PPQQD----PPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANA 651
PP + P +P + + ++ ++ + ++ +GI A++
Sbjct: 705 KPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLK------AGFHASNVIGIAADS 758
Query: 652 HTVFADR---------EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDF 702
DR E + + L+L + + A+D PK G +P L +P +
Sbjct: 759 WLTIMDRLLILGDERAEEKAEMKKKMLKLIDIYYDALDAPKKGDKVYLPNELRPDIFPHY 818
Query: 703 MEKPDKPTYESQNVIGKLFRAVK 725
ME+ K ++S +++G ++ VK
Sbjct: 819 MEREKK--FKSTSILGLIYDFVK 839
>gi|42569168|ref|NP_179583.3| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5
gi|330251850|gb|AEC06944.1| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
Length = 977
Score = 110 bits (275), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 165/680 (24%), Positives = 267/680 (39%), Gaps = 133/680 (19%)
Query: 137 DDGLVYVHRVQVTPSRVY-------FCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDK 189
D G + ++ V P+ Y GP + + L D DN L + F D
Sbjct: 198 DSGKTHYYQCNVAPNGSYTFKVLSALQGPLLEHTGTHLHKVLGD-DNVLTVKFADVQ--- 253
Query: 190 IHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAF------------SSS 237
+ SS I Y I +NGI+IG R+++F F S+
Sbjct: 254 --------KSSSTYSIDHYFTYKGIA---KNGIMIGLRRYQFFVFKDGGKEEKKKDLSTK 302
Query: 238 QLR------ESSAWM-FASRYGLTAAEIREWMGNFREIR---NVAKYAARLGQSFSSSKE 287
+++ +S+A+ + Y LT I E +F + +A Y AR S +K
Sbjct: 303 KVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLILSKTK- 361
Query: 288 TLSVHMDEIEI--IPDVK---------IEIGKTKYVFSDGIGKVSAEFARKV-----ASK 331
TL V M I I D+ ++ K + SDG G +S + AR K
Sbjct: 362 TLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGK 421
Query: 332 C--------GLKDNPPSAFQIR--YGGY--KGVVAADPT-SSKKLSLRDSMRKYE----- 373
C +PP Q R Y GY KG + + + +R SM K
Sbjct: 422 CLRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSL 481
Query: 374 ---SELTKLDVLAWSKY-QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 429
S L+V+ S + L++ L++LLS GI +E F + + +I +
Sbjct: 482 SNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKR 541
Query: 430 KAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 489
A A ++ N + +L+ P EP L L ++ +L+ ++ +
Sbjct: 542 AALNAALNYGEMDDQNAAQMILVG--IPLDEPHLKNYLSILLKTEKNDLKA-GKLPVTES 598
Query: 490 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 549
+MG +D T L +V V + Q+ GE V+V +NP L
Sbjct: 599 YYLMGTVDPTGALKEDEVCVILESG---QISGE------------------VLVYRNPGL 637
Query: 550 HPGDVRVLKAVNVPALHHMVD----CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
H GD+ +LKA V AL V V FPQKG R +E +G D DGD+YF+ + EL+
Sbjct: 638 HFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELL 697
Query: 606 P--PQQDPPMDYTP---------AQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTV 654
+P + TP + + + + ++ +GI A++
Sbjct: 698 ENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLT 757
Query: 655 FADR---------EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEK 705
DR E + + L+L + + A+D PK G +P L +P +ME+
Sbjct: 758 IMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMER 817
Query: 706 PDKPTYESQNVIGKLFRAVK 725
K ++S +++G +F VK
Sbjct: 818 DKK--FQSTSILGLIFDFVK 835
>gi|242053113|ref|XP_002455702.1| hypothetical protein SORBIDRAFT_03g022060 [Sorghum bicolor]
gi|241927677|gb|EES00822.1| hypothetical protein SORBIDRAFT_03g022060 [Sorghum bicolor]
Length = 108
Score = 109 bits (273), Expect = 6e-21, Method: Composition-based stats.
Identities = 50/108 (46%), Positives = 73/108 (67%)
Query: 613 MDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLA 672
MDYT + +DH V +E+++++F +Y+ ND+LG+I+ H + AD P A + CLQLA
Sbjct: 1 MDYTATRPRIMDHAVTLEEIQKHFDSYMTNDTLGVISTVHLIHADHNPLNAHTPKCLQLA 60
Query: 673 EKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKL 720
S+AVDF KTG PAE+ L +E+PDFME+ ++P Y S NV+ KL
Sbjct: 61 ALHSMAVDFAKTGPPAEMSLTLRPREFPDFMEQWERPMYVSNNVLDKL 108
>gi|358392113|gb|EHK41517.1| hypothetical protein TRIATDRAFT_321718 [Trichoderma atroviride IMI
206040]
Length = 1316
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 105/402 (26%), Positives = 169/402 (42%), Gaps = 60/402 (14%)
Query: 249 SRYGLTAAEIREWMGNFREIRN----VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 304
+R + +++ W + RN V K +RL S S + T+ + +I I
Sbjct: 548 NRKKMKISDLLRWAISIDNKRNAEQPVTKLFSRLALSLSRTWPTVQLERHQIRIRTK--- 604
Query: 305 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK-- 362
++G K V +DGIG++SA A+KVA GL D P S FQ R G KG+ D S
Sbjct: 605 DLGTGKMVMNDGIGRISASLAKKVAELLGLTDCP-SCFQGRLGSAKGMWLIDVDSEGDFE 663
Query: 363 -------LSLRDSMRKYESELT-----KLDVLAW-SKYQPCFLNRQLISLLSTL----GI 405
+ + S RK+E + L++ W ++ + LN+Q I +L G+
Sbjct: 664 EDFEKDWVEIYPSQRKWECDFKDVHHRTLEIRNWPAELKSASLNQQFIPVLEARSKDSGL 723
Query: 406 WDEIFEKKQREAVRQLDAILTDPLKAQEALELM----SPGENTNILKE------------ 449
+ + A+ TD +K +L L P N +L
Sbjct: 724 MRRVMSSHLQRALHADLGEQTDAMKDTMSLRLWIHQSGPSRNDRLLDGSAEFLAGLPNNS 783
Query: 450 ------LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN 503
LL G+ +L + K L+TK I +P + D + TL
Sbjct: 784 ADKVAFLLDSGFDQKRLKYLKDAVLDIYQKKADTLKTKMNITVPCSAYVYMAADFSSTLE 843
Query: 504 YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP 563
G+V + S Q+ G FS + + Q ++VA+ P P D++ ++ V+ P
Sbjct: 844 EGEVHLSFSTKF--QVEG----FSDT-----LLEQMDILVARAPAHLPSDIQRVRVVSRP 892
Query: 564 ALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
L + D ++F KG P ++ SG D DGDI +VCWD ++
Sbjct: 893 ELRRLKDVIIFSTKGSVPLADKLSGGDYDGDIAWVCWDQSIV 934
>gi|15419599|gb|AAK97084.1|AF293414_1 RNA-dependent RNA-polymerase [Giardia intestinalis]
Length = 1377
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 121/489 (24%), Positives = 205/489 (41%), Gaps = 122/489 (24%)
Query: 261 WMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKV 320
W+G+ +E++ K R G F S T+ V ++++I+ D + YVF+DG G++
Sbjct: 260 WLGDIKEVQ-ACKICTRRGLCFGKSLPTIKVREEDVQIVSDKEY----NGYVFTDGAGEI 314
Query: 321 SAEFARKVASKC-------------------GLKDNP----------------------- 338
S + ++A C G D
Sbjct: 315 SYDLMLEIA-LCLDKLKIEQLHKDTETYYDNGFADTNEDSEHTVPHLQPNLKTASNLIQV 373
Query: 339 PSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKY------ESELTKLDVLAWSKYQPCF 391
PSA Q+R+ G KGV+ + + + S K+ E++ T L++L ++
Sbjct: 374 PSAVQMRWAGTKGVLILNALLPPRTILFHKSQVKFSIPNPTETQQT-LEILRVAQRSKGM 432
Query: 392 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL--TDPLKAQEAL-ELMSPGENTN--- 445
+N Q+I LLS +G+ D++F + +++ L D + Q L +L+S +++
Sbjct: 433 INMQIIVLLSEMGVPDDVFLNLVYQDLQKTLLFLEPVDRCRHQADLYQLVSRASHSSSGK 492
Query: 446 ILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYG 505
++ ++L+ G EP L +L + +L ++ R ++P+ R +G D L G
Sbjct: 493 LILQMLMAGVDI-TEPCLQFLLMKLQMMQLRSMKANMRFYVPDSRIFVGVYDCFDLLKEG 551
Query: 506 QVFVQISG-AGYRQLHGESSLFSSSRSRQR---------------------FIVQGLVVV 543
+V+V + + + L + S Q+ V+G VVV
Sbjct: 552 EVYVGLQEPLSISKWAAATHLKAMSNDTQQEALLPPDLDLQISDIAVGLNISCVEGRVVV 611
Query: 544 AKNPCLHPGDVRVLKAVNV--------------PALHHMV----------DCVVFPQ--K 577
AKNPC + GDVR+ AVN+ P L V + FP+ +
Sbjct: 612 AKNPCFYRGDVRIYHAVNIFERLRREASRQNLKPVLPSFVAQEAIRGMYRGVICFPKYYE 671
Query: 578 GMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLD------HDVQIED 631
G RP + SGSDLDGDIY+V WD L+ Q +Y PA S Q + H + + D
Sbjct: 672 G-RPMTDCLSGSDLDGDIYWVSWDASLLGTIQ---REYEPA-SFQANPGEIDAHALDLRD 726
Query: 632 VEEYFTNYI 640
+E N +
Sbjct: 727 IEAGLGNLL 735
>gi|361130100|gb|EHL01954.1| putative RNA-dependent RNA polymerase 2 [Glarea lozoyensis 74030]
Length = 263
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 96/180 (53%), Gaps = 20/180 (11%)
Query: 430 KAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR--TKTRIFIP 487
K A ++ + +++LI G++ +P L+ ++ + +++ R + RI IP
Sbjct: 73 KQTSAFRFLTYTNKPELAEKVLIDGFE-TVQPTLTKLVNS-EYDRMINKRDEQRCRILIP 130
Query: 488 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKN 546
R + G D L G+ V+++ G Q + ++G+ V+V +N
Sbjct: 131 KSRLLFGICDAWGVLKEGECAVKVTMDG---------------DGQPYTLKGMDVLVTRN 175
Query: 547 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIP 606
PCLHPGD++ KAV L H+VDC+VFP +G RP + SG DLDGD +FVCWD +LIP
Sbjct: 176 PCLHPGDLQKFKAVERDELAHLVDCIVFPTRGARPAADLMSGGDLDGDTFFVCWDSDLIP 235
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 289 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS--KCGLKDN--PPSAFQI 344
++++ + IPD++ + YVF+DG G +S AR+++ + ++ PS FQI
Sbjct: 1 MTLNPSRCQDIPDIEAQ----DYVFTDGCGLISKHLARELSRVLRVAFRNTRYTPSVFQI 56
Query: 345 RYGGYKGVVAADPTSSKKLS 364
RY GYKGV+ DP K+ S
Sbjct: 57 RYRGYKGVLMLDPGMEKQTS 76
>gi|159120120|ref|XP_001710276.1| RNA-directed RNA polymerase, putative [Giardia lamblia ATCC 50803]
gi|21666386|gb|AAM73688.1|AF393743_1 RNA dependent RNA polymerase [Giardia intestinalis]
gi|157438394|gb|EDO82602.1| RNA-directed RNA polymerase, putative [Giardia lamblia ATCC 50803]
Length = 2001
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 121/489 (24%), Positives = 205/489 (41%), Gaps = 122/489 (24%)
Query: 261 WMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKV 320
W+G+ +E++ K R G F S T+ V ++++I+ D + YVF+DG G++
Sbjct: 428 WLGDIKEVQ-ACKICTRRGLCFGKSLPTIKVREEDVQIVSDKEY----NGYVFTDGAGEI 482
Query: 321 SAEFARKVASKC-------------------GLKDNP----------------------- 338
S + ++A C G D
Sbjct: 483 SYDLMLEIA-LCLDKLKIEQLHKDTETYYDNGFADTNEDSEHTVPHLQPNLKTASNLIQV 541
Query: 339 PSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKY------ESELTKLDVLAWSKYQPCF 391
PSA Q+R+ G KGV+ + + + S K+ E++ T L++L ++
Sbjct: 542 PSAVQMRWAGTKGVLILNALLPPRTILFHKSQVKFSIPNPTETQQT-LEILRVAQPSKGM 600
Query: 392 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL--TDPLKAQEAL-ELMSPGENTN--- 445
+N Q+I LLS +G+ D++F + +++ L D + Q L +L+S +++
Sbjct: 601 INMQIIVLLSEMGVPDDVFLNLVYQDLQKTLLFLEPVDRCRHQADLYQLVSRASHSSSGK 660
Query: 446 ILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYG 505
++ ++L+ G EP L +L + +L ++ R ++P+ R +G D L G
Sbjct: 661 LILQMLMAGVDI-TEPCLQFLLMKLQMMQLRSMKANMRFYVPDSRIFVGVYDCFDLLKEG 719
Query: 506 QVFVQISGA-GYRQLHGESSLFSSSRSRQR---------------------FIVQGLVVV 543
+V+V + + + L + S Q+ V+G VVV
Sbjct: 720 EVYVGLQEPLSISKWAAATHLKAMSNDTQQEALLPPDLDLQISDIAVGLNISCVEGRVVV 779
Query: 544 AKNPCLHPGDVRVLKAVNV--------------PALHHMV----------DCVVFPQ--K 577
AKNPC + GDVR+ AVN+ P L V + FP+ +
Sbjct: 780 AKNPCFYRGDVRIYHAVNIFERLRREASRQNLKPVLPSFVAQEAIRGMYRGVICFPKYYE 839
Query: 578 GMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLD------HDVQIED 631
G RP + SGSDLDGDIY+V WD L+ Q +Y PA S Q + H + + D
Sbjct: 840 G-RPMTDCLSGSDLDGDIYWVSWDASLLGTIQ---REYEPA-SFQANPGEIDAHALDLRD 894
Query: 632 VEEYFTNYI 640
+E N +
Sbjct: 895 IEAGLGNLL 903
>gi|42569164|ref|NP_179581.2| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3
gi|330251848|gb|AEC06942.1| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
Length = 992
Score = 106 bits (264), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 150/615 (24%), Positives = 245/615 (39%), Gaps = 134/615 (21%)
Query: 210 IYTRILSTLRNGILIGDRKFEFLAF-------------------------SSSQLRESSA 244
+Y+ +NGI++G R++ F F S++ + +
Sbjct: 267 LYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVKCYFIRTDSTASIDMQNP 326
Query: 245 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEI--EIIPDV 302
++FA G + E R + + ++ Y +R S +K TL V M I E I D+
Sbjct: 327 YIFA---GKSMHEARMHFMHVNTLSSLPNYMSRFSLILSKTK-TLEVDMTGITFEQIDDI 382
Query: 303 KIEIGKTKYVF---------SDGIGKVSAEFAR---------------KVASK------- 331
K V SDG G +S + AR + SK
Sbjct: 383 HCHDQDDKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMRSNNIQSKNLNFEGQ 442
Query: 332 --CGLKDNPPSAFQIR--YGGYKGVVAADPTSSKKL-----SLRDSMRK-YE-------S 374
CG PP Q R Y GY V ++KKL +R SM K YE S
Sbjct: 443 GPCG--QEPPLLIQFRIFYNGY--AVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLS 498
Query: 375 ELTKLDVLAWSKY-QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 433
L+V+ S + L+R L++LLS G+ ++ F R + + I A +
Sbjct: 499 TFNSLEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFK 558
Query: 434 ALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 493
A ++ G++ ++++ G P EP+L L ++ L+ R I +M
Sbjct: 559 AA--INYGDD-QYTADMILVGI-PLDEPYLKDRLSYLLKTERNALKA-GRFPIDESYYIM 613
Query: 494 GCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGD 553
G +D T L ++ V + + G V+V +NP LH GD
Sbjct: 614 GTVDPTGELKENEICVILHSGQ---------------------ISGDVLVYRNPGLHFGD 652
Query: 554 VRVLKAVNVPALHHMVD----CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIP--- 606
+ VLKA V AL V V FPQKG R +E +G D DGD+YF+ + +L+
Sbjct: 653 IHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFK 712
Query: 607 ------PQQDPPMDYTPAQSMQLDHDVQIEDVEEYF--TNYIVNDSLGIIANAHTVFAD- 657
P Y + +L + E++ + F + D +G+ A+ D
Sbjct: 713 PSEPWVSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDP 772
Query: 658 --------REPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKP 709
+ + R + L+L + + A+D PK G ++PP L +K +P +ME+ K
Sbjct: 773 FLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKR 832
Query: 710 TYESQNVIGKLFRAV 724
+ S +++G +F V
Sbjct: 833 DFRSTSILGLIFDTV 847
>gi|221481781|gb|EEE20151.1| RNA-dependent RNA polymerase, putative [Toxoplasma gondii GT1]
Length = 1186
Score = 105 bits (263), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 128/539 (23%), Positives = 203/539 (37%), Gaps = 158/539 (29%)
Query: 135 SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN--FLRISFIDEDLDKIHS 192
+L G + V ++ VTP +V G + +R+ R + ++ +R++F++ED
Sbjct: 295 TLRQGGIPVLQILVTPLKVLLKGVYSELGSRLTRQYANEVAAGLLVRLAFVEEDGK---- 350
Query: 193 TDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG 252
A SSS R A +
Sbjct: 351 ----------------------------------------AMSSSLHRAQDAPLEDRNKE 370
Query: 253 LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDV---------- 302
L+A I +G F + RLG FSS+ T+ V +E+ ++PDV
Sbjct: 371 LSAEAILSRLGVFNSSISPGVLTKRLGICFSSTLPTIDVRDEEMLLVPDVTSSAVTAAMS 430
Query: 303 -------------------KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQ 343
K++ +++F+DG G +S + R++ + C SAFQ
Sbjct: 431 GEAQRRKGEEERRISSRGIKLDPNSPEFIFTDGSGAISLDLWRRIVA-CLPALRTSSAFQ 489
Query: 344 IRYGGYKGVV---------AADPTSSKKLSLRDSMRKYESE------------------- 375
IR GG KG++ K L + SM K+ S
Sbjct: 490 IRLGGIKGMLLLHPAFPLPRPPAPRLKHLLISQSMYKFHSRSRIRKSAESNPGKAKLAWR 549
Query: 376 ---------LTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT 426
L L++ +S+ P FLNRQ+I LL TLG+ +F++ QR + L I T
Sbjct: 550 FSGMASVSFLQCLEINDFSRRLPYFLNRQVILLLDTLGVEFSVFDRLQRRMLHFLRDIDT 609
Query: 427 DPLKAQEALELMSPGENTNILKELL-ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 485
K + E + E + + G P EPFL L+ R S +LR KTRIF
Sbjct: 610 RGRKPRREAESLGTSRFAQTCLEFVSVHGVSPK-EPFLRACLEAMRNSLADDLRKKTRIF 668
Query: 486 IPNGRSMMGCLDETRTLNYG----------------QVFVQISGA-----------GYRQ 518
+ G ++ G D T +L Y +V V ++ +
Sbjct: 669 VEKGANLFGVPDFTHSLAYDHGWRSSPSGRLYAGLPEVCVHVTKSPVSDSEIPRRTAIAS 728
Query: 519 LHGESSLFS---SSRSRQRFI-------------VQGLVVVAKNPCLHPGDVRVLKAVN 561
HG S + + R ++R I +QG+V V +NPCL PGD+++ AV
Sbjct: 729 RHGSLSPEADAEAERPKRRLISCGSHSLGAGAELIQGVVAVCRNPCLLPGDIQLCFAVG 787
>gi|452002294|gb|EMD94752.1| hypothetical protein COCHEDRAFT_1201293 [Cochliobolus heterostrophus
C5]
Length = 1666
Score = 105 bits (263), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 128/506 (25%), Positives = 208/506 (41%), Gaps = 91/506 (17%)
Query: 310 KYVFSDGIGKVSAEFARKV----ASKCGLKDNPPSAFQIRYGGYKGV-------VAADPT 358
+ V DG +S A+K+ G+ D PSAFQ R GG KG+ +PT
Sbjct: 982 RTVMDDGCCVMSVGAAKKIWDLYTKATGVTDPLPSAFQGRIGGAKGIWVINAERFTKEPT 1041
Query: 359 SSKK-LSLRDSMRKYESELTK------LDVLAWSKY-QPCFLNRQLISLLSTLG-----I 405
+ + + DS K+E + +VL +S P L+ I +L+ G I
Sbjct: 1042 HLEPWIMINDSQWKFEPPNDQSPYHRTFEVLNYSSTPSPSELHSLFIPILADRGVPKEAI 1101
Query: 406 WDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKE---------------- 449
D +F+ ++E + L+ +L D K E + G NT + +E
Sbjct: 1102 SDLMFDSLEKERMNLLN-VLQDTTKVHEWV--YRNGANTKLREETPGRAGQPASLEEKVL 1158
Query: 450 -LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 508
LL G+ P P+L+ L++F S+ + K R+ +P + G D LN G++
Sbjct: 1159 NLLESGFDPLKFPYLAQNLESFILSRQIFQEAKLRVLLPKSTFLYGVADPKGVLNPGEIQ 1218
Query: 509 VQISGAGYRQLHGESSLFSSSRSRQRFI-VQGL-VVVAKNPCLHPGDVRVLKAVNVPALH 566
V S F + +R++ ++ L V+VA++P D++ ++ V P L
Sbjct: 1219 VLFSWP-----------FLDETTNERYLELRDLNVLVARHPACRRSDIQKVRTVIHPELS 1267
Query: 567 HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQ------- 619
H+VD VF KG P + G D DGDI+++CW++ L+ P + P P +
Sbjct: 1268 HLVDVAVFSSKGSFPLAGKLQGGDYDGDIFWICWENTLVQPFFNAPAPVQPPEPSLYGIE 1327
Query: 620 --SMQLDH--DVQIEDVEEYFTN--YIVNDSLGIIANAHTVFADREPRKARSEPCL---- 669
+ +L H DV+ D + F + D ++ A T+ A+ + A SE C+
Sbjct: 1328 KRTEKLKHIVDVKRPDKVDAFLKRAFEFRDHSSLLGQA-TILAESQ---AYSENCVHSGT 1383
Query: 670 --QLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDI 727
+L + + VD K G + Y E P P Y+ RA KD
Sbjct: 1384 LEKLYDVHDLLVDASKQGYI--LTQSKYNSSVKTLCENPKDPAYK---------RAAKDC 1432
Query: 728 APHTSCIRLFTKEVARRSYDPDMEVD 753
I + Y PD +D
Sbjct: 1433 KNARISIDTLKCREKKYGYKPDNILD 1458
>gi|222617921|gb|EEE54053.1| hypothetical protein OsJ_00746 [Oryza sativa Japonica Group]
Length = 1148
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 142/567 (25%), Positives = 225/567 (39%), Gaps = 106/567 (18%)
Query: 239 LRESSAWMFASRY---GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDE 295
+R S W Y G T + R+ + R + +AKY R S + TL V + E
Sbjct: 461 VRTESGWNMDEPYILSGRTIGQARDLFMHIRTVLTLAKYMLRFALIVSKTI-TLDVDLSE 519
Query: 296 I--EIIPDVKI--EIGKT------KYVFSDGIGKVSAEFARKVA---SKCGLKDNPPSAF 342
+ ++I D E GK + + +DG G +S + A+K SK L + P
Sbjct: 520 VLVKLIDDEPCLDEHGKEVFRDGERLIHTDGTGLISEDLAQKCTYSNSKGKLLEPQPLLI 579
Query: 343 QIR--YGG--YKGVVAADP-TSSKKLSLRDSMRKYES--------ELTKLDVLAWSKYQP 389
Q+R Y G KG V D + + +R SM K ++ + LD+++ +
Sbjct: 580 QLRLFYNGSAVKGTVLVDKRLPPRTIHIRPSMLKIKTYPELSGVQSVNSLDIVSARNAKK 639
Query: 390 ----------------------CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 427
F + LI+LL G+ +E F + + A+ + D D
Sbjct: 640 SLSGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELLQTAIEEADNARFD 699
Query: 428 PLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR--TKTRIF 485
A + E++ + +I P E +L L LLE + +I
Sbjct: 700 YAGALNIAFNYADMEDS--MPARMILSGIPLEESYLQSRLDFL---SLLERKGIKNGKIP 754
Query: 486 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 545
I + +MG D T L +V V + Y Q+ G+ V+V K
Sbjct: 755 IDDCYYLMGTADPTGKLGPNEVCVILD---YGQVSGD------------------VLVYK 793
Query: 546 NPCLHPGDVRVLKAVNVPALHHMVD----CVVFPQKGMRPHPNECSGSDLDGDIYFVCWD 601
P LHPGD+ VLKA + +V ++FP G R +E + SD DGDIY+V +
Sbjct: 794 YPGLHPGDIHVLKATYSSDIEKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLN 853
Query: 602 DELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEE-------------------YFTNYIVN 642
+L+ P + PA + ED E Y
Sbjct: 854 PKLLE-HFKPSKPWVPAITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARATAAT 912
Query: 643 DSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDF 702
+ L + TV D +K + L+L + + +A+D PK G IP L VK+YP F
Sbjct: 913 NWLVYMDRLLTVSLDESEKKLIEKKMLKLVDLYYLALDAPKMGNKVNIPRDLMVKQYPHF 972
Query: 703 MEKPDKPTYESQNVIGKLFRAVKDIAP 729
M++ P+Y S +++GK++ D P
Sbjct: 973 MDR--SPSYHSSSILGKIYDKAGDPKP 997
>gi|242215346|ref|XP_002473489.1| predicted protein [Postia placenta Mad-698-R]
gi|220727390|gb|EED81310.1| predicted protein [Postia placenta Mad-698-R]
Length = 1162
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 157/674 (23%), Positives = 266/674 (39%), Gaps = 135/674 (20%)
Query: 146 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI 205
V TP+R+ GP SN V+R + D+F+R+ F+DE+L + + D G +
Sbjct: 348 VTFTPTRMILEGPTRVQSNSVIRKYWPHRDHFIRVDFLDENLSQ-YRFDREVDGPAF--- 403
Query: 206 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNF 265
++ + L+ G + F++ S Q A R +TA IR +G+
Sbjct: 404 ----LHDHVGKVLKGGFEVAGSPFDYSPDSEMQP--------AVR--MTADRIRGALGDL 449
Query: 266 REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFA 325
EI+ AKYAAR+GQ+F+S+ ++ + D+ E I ++ E + +DG+G++S
Sbjct: 450 SEIKIPAKYAARIGQAFTSTMCSMPISRDQWEEIDEI-WEDRENPRSHTDGVGRLSQALM 508
Query: 326 RKVASKC-------GLKDNPPSAFQIRY------------------GGYKGVVAADPT-S 359
++ G+ PSA Q R+ GYKGV+A DP S
Sbjct: 509 DRIWDIVCNLYPDYGVYGVKPSAVQFRFLGKSFNTIVQKITHSSSPLGYKGVLAVDPQLS 568
Query: 360 SKKLSLRDSMRKYESELT------KLDVLAWSKYQP------------CFLNRQLISLLS 401
+++ R MRK++ + LD Q +L R L+S+L
Sbjct: 569 GERICFRPEMRKFKPLICPYCREGNLDFCPHENDQNLHIADIFDSPKRAYLTRDLVSILE 628
Query: 402 TLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN---TNILKELLICGY--- 455
G+ + F Q+EA + + + L+ G +L+ L G
Sbjct: 629 DRGVHLKAFMDLQQEAKMKTYQARDSVTQFMDILQTHHMGFQFRLPRLLERLDSLGVDAT 688
Query: 456 -KPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGA 514
+A+ F + + L +++ + RI +P ++G DE Q + +
Sbjct: 689 RNQEADDFTRRVREHAIQHVLCDMKNRARIPVPRSYLLVGVADEGPAYT-KQGYENVFQL 747
Query: 515 GYRQLHGESSLFSSS------RSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 568
G Q+ G L++ S R F+ V H G V ++ AL ++
Sbjct: 748 GANQIFGPYILYTCSQALTARRGHHDFLQPAFNKVQMQN--HSGSVAIVLLRG--ALRYI 803
Query: 569 V--------------DCVVFPQKG----MRPHPN-----------ECSGSDLDGDIYFVC 599
+ + VF PN E S + D+Y+V
Sbjct: 804 LVMVRGASSWYFSYRELTVFLSAARCCYWETIPNRRADLPIRSYEERSCASFRCDLYYVF 863
Query: 600 WDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADRE 659
+L+P P Y + D DV ++ T Y+ +D+L +
Sbjct: 864 QYYQLLPTIHIAPASYNDIKPPGRPFD--WTDVCDFITEYMHSDAL---------HGSHD 912
Query: 660 PRKARSEPCLQLAEKFSIAVDFPKTGVPAEI--PPHLYVKEYPDFM------EKPDKPTY 711
PR C++LAE S AVD+PKTG P ++ P ++ PD+ P +Y
Sbjct: 913 PR------CMRLAELCSDAVDYPKTGRPVDMRTAPGKLMQYNPDWYADEDTNANPLADSY 966
Query: 712 ESQNVIGKLFRAVK 725
+S V+G L+R +K
Sbjct: 967 QSDRVLGHLYRGIK 980
>gi|237843439|ref|XP_002371017.1| RNA dependent RNA polymerase domain-containing protein [Toxoplasma
gondii ME49]
gi|211968681|gb|EEB03877.1| RNA dependent RNA polymerase domain-containing protein [Toxoplasma
gondii ME49]
gi|221502280|gb|EEE28013.1| RNA-dependent RNA polymerase, putative [Toxoplasma gondii VEG]
Length = 1186
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 128/539 (23%), Positives = 199/539 (36%), Gaps = 158/539 (29%)
Query: 135 SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN--FLRISFIDEDLDKIHS 192
+L G + V ++ VTP +V G + +R+ R + ++ +R++F++ED
Sbjct: 295 TLRQGGIPVLQILVTPLKVLLKGVYSELGSRLTRQYANEVAAGLLVRLAFVEEDGK---- 350
Query: 193 TDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG 252
A SSS R A +
Sbjct: 351 ----------------------------------------AMSSSLHRAQDAPLEDRNKE 370
Query: 253 LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDV---------- 302
L+A I MG F + RLG FSS+ T+ V +E+ ++PDV
Sbjct: 371 LSAEAILSRMGVFNSSISPGVLTKRLGICFSSTLPTIDVRDEEMLLVPDVTSSAVTAAMS 430
Query: 303 -------------------KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQ 343
K++ +++F+DG G +S + R++ + C SAFQ
Sbjct: 431 GEAQRRKGDEERRISSRAIKLDPNSPEFIFTDGSGAISLDLWRRIVA-CLPALRTSSAFQ 489
Query: 344 IRYGGYKGVV---------AADPTSSKKLSLRDSMRKYESE------------------- 375
IR GG KG++ K L + SM K+ S
Sbjct: 490 IRLGGIKGMLLLHPAFPLPRPPAPRLKHLLISQSMYKFHSRSRIRKSAEANPGKAKLAWR 549
Query: 376 ---------LTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT 426
L L++ +S+ P FLNRQ+I LL TLG+ +F++ QR + L I T
Sbjct: 550 FSDMASVSLLQCLEINDFSRRLPYFLNRQVILLLDTLGVEFSVFDRLQRRMLHFLRDIDT 609
Query: 427 DPLKAQEALELMSPGENTNILKELL-ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 485
K + E + E + + G P EPFL L+ R S +LR K RIF
Sbjct: 610 RGRKPRRDAESLGTSRFAQTCLEFVSVHGVSPK-EPFLRACLEAMRNSLADDLRKKARIF 668
Query: 486 IPNGRSMMGCLDETRTLNYG----------------QVFVQISGA-----------GYRQ 518
+ G ++ G D T +L Y +V V ++ +
Sbjct: 669 VEKGANLFGVPDFTHSLAYDHGWRSSPSGRLYAGLPEVCVHVTKSPVSDSEIPRRTAIAS 728
Query: 519 LHGE----------------SSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 561
HG SS S S ++QG+V V +NPCL PGD+++ AV
Sbjct: 729 RHGSLSPEADAEAERPKRRLSSCGSHSLGAGAELIQGVVAVCRNPCLLPGDIQLCFAVG 787
>gi|296417840|ref|XP_002838558.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634502|emb|CAZ82749.1| unnamed protein product [Tuber melanosporum]
Length = 1700
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 181/392 (46%), Gaps = 54/392 (13%)
Query: 270 NVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVA 329
V K+ +R+ FS++ + ++EI+ D+K G+ V +DG VS + +++
Sbjct: 996 TVPKFWSRISLGFSTAVPSFKFEPSQVEIVRDMKSTTGE---VMNDGCSVVSPKVMQEIR 1052
Query: 330 SKCGLKDNPPSAFQIRYGGYKGVVAADPT---SSKKLSLR--DSMRKYES-------ELT 377
L + P +A Q R GG KGV DP+ SS ++ ++ DS KY
Sbjct: 1053 RILDLHETP-TAVQARLGGAKGVWMIDPSIDWSSDEIFIKVTDSQLKYSGYADDQDWARM 1111
Query: 378 KLDVLAWS-KYQPCFLNRQLISLLSTLGI----WDEIFEKKQREAVRQLDAILTDPLKAQ 432
LD+L S + +P +N QLI +L G+ E+ E+ E + +L ++ P++ +
Sbjct: 1112 TLDILHISHEPRPATINIQLIPILENRGVPFQALKELTEEHLEEDLDELFQVIDKPVELR 1171
Query: 433 EAL-ELMSPGENTNILKELLICGYKPDAEPFLSMMLQT----FRASKLL----------- 476
+ + S G + + G P + ++++L R+ ++L
Sbjct: 1172 KWIYNRGSVGRARISFNGIQVTGSMPSTKHEMAILLLESGFLVRSCRVLMDHVRVMIDQY 1231
Query: 477 --ELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQR 534
EL+ K I IP+ +++ D T TL G+V ++ S + R+
Sbjct: 1232 CEELKEKLHIRIPHSTTLLCVADPTGTLREGEVSLRFS----------NGFLDPKTLRRT 1281
Query: 535 FIVQGLVVVAKNPCLHPGDVRVLKAVNVP-----ALHHMVDCVVFPQKGMRPHPNECSGS 589
++ G ++VA+NP P D++ +KAV++ AL + D +VF +G + + SG
Sbjct: 1282 QVITGDILVARNPAHIPSDIQKVKAVDIQPYHSLALRELQDVIVFSTQGDQSLASLLSGG 1341
Query: 590 DLDGDIYFVCWDDELIPPQQDPPMDYTPAQSM 621
D DGD +VCW++ L+ P + P Y +M
Sbjct: 1342 DYDGDKPWVCWEERLVKPFTNSPTTYVEVDAM 1373
>gi|238580928|ref|XP_002389446.1| hypothetical protein MPER_11425 [Moniliophthora perniciosa FA553]
gi|215451719|gb|EEB90376.1| hypothetical protein MPER_11425 [Moniliophthora perniciosa FA553]
Length = 316
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 145/294 (49%), Gaps = 35/294 (11%)
Query: 106 ECCYEPS--RWLTDQYRKYMTSRSKPSSPAISL---DDGLVYVHRVQVTPSRVYFCGPEI 160
E C S + L ++K + + S+ A+ DDG+ VQ+TP+ + F GP
Sbjct: 12 ELCLSKSGVQTLKQCFQKVKRTHDRLSNTALVTSRDDDGIFLCMHVQITPTGMIFDGPIP 71
Query: 161 NVSNRVLRHFRRD-IDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLR 219
SNRV+R ++ + NFLR+SF DE ++ R D I R+ R
Sbjct: 72 ERSNRVIRQYKSEHHHNFLRVSFNDEGRLQLQFN----REIDGDDF----IKRRVQPFFR 123
Query: 220 NGILIGDRKFEFLAFSSSQLRESSAWMFAS----RYGLTAAEIREWMGNFRE-------I 268
G+ + R F FL +S S L+E + + AS +T A + E +G+F + I
Sbjct: 124 EGLRVAGRVFYFLGYSQSALKEHAVYFMASFEQDGKQITTASVIESLGSFADLPFDSKLI 183
Query: 269 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK-IEIGKTKYVFSDGIGKVSAEFARK 327
A+YAAR+ Q F+++ T + + + +PD++ + K + +DG+G +S EFAR
Sbjct: 184 YCPARYAARISQGFTATDPTTTEVENIVLDLPDIESTDKNGKKQIHTDGVGTMSPEFARS 243
Query: 328 VASK----CGLKDNPPSAF----QIRYGGYKGVVAADPT-SSKKLSLRDSMRKY 372
+ ++ + P S + QIR+ G KGV++ D T S K + LR SM K+
Sbjct: 244 IHAERQSRRRGRRRPLSEYARVLQIRFLGSKGVISVDHTLSGKTVCLRPSMVKF 297
>gi|358377627|gb|EHK15310.1| hypothetical protein TRIVIDRAFT_122493, partial [Trichoderma virens
Gv29-8]
Length = 1284
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 98/385 (25%), Positives = 163/385 (42%), Gaps = 54/385 (14%)
Query: 271 VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS 330
V K +RL S S + T + +D+ +II + ++ K V +DGIG++S A+KV
Sbjct: 550 VTKLFSRLALSLSRTWPT--ILLDDHQIIRKRR-DLKPGKMVMNDGIGRISPSLAKKVTE 606
Query: 331 KCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRD------SMRKYESELT-----KL 379
GL D P S FQ R G KG+ D S++ S RD S RK+E + L
Sbjct: 607 ALGLSDCP-SCFQGRLGSAKGMWLID-VDSEEDSERDWVEVYPSQRKWECDYDDPHHRTL 664
Query: 380 DVLAW-SKYQPCFLNRQLISLLSTLG--------IWDEIFEKKQREAVRQLDAILTDPLK 430
++ W S+ + LN+Q I +L + E ++ + + A + +P+
Sbjct: 665 EIRNWPSELKSASLNQQFIPVLEARSPQPDAMRRVISEHLQRALHADLGEQAAAMKEPMS 724
Query: 431 AQEALELMSPGENTNILKE------------------LLICGYKPDAEPFLSMMLQTFRA 472
+ + P +N L LL G+ +L ++
Sbjct: 725 LRLWIHQSGPSKNDRSLDGSAKFLAGLPDSGADKVAFLLDSGFDQRRMKYLKELVWDMCK 784
Query: 473 SKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSR 532
K L+TK I IP + D + TL G+V + S + F +
Sbjct: 785 KKADTLKTKMNITIPCSAYIYMAADFSSTLEEGEVHLSFS-----------TKFQAEGFS 833
Query: 533 QRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLD 592
+ ++VA+ P P D++ ++ V+ P L + D ++F KG +P + SG D D
Sbjct: 834 DTLLEHMDILVARAPAHFPSDIQRVRVVSRPELRKLKDVIIFSTKGDKPLADMLSGGDYD 893
Query: 593 GDIYFVCWDDELIPPQQDPPMDYTP 617
GD+ +VCWD ++ + PM P
Sbjct: 894 GDMAWVCWDQNIVKNFDNAPMPDKP 918
>gi|218187687|gb|EEC70114.1| hypothetical protein OsI_00773 [Oryza sativa Indica Group]
Length = 1172
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 142/567 (25%), Positives = 225/567 (39%), Gaps = 106/567 (18%)
Query: 239 LRESSAWMFASRY---GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDE 295
+R S W Y G T + R+ + R + +AKY R S + TL V + E
Sbjct: 472 VRTESGWNMDEPYILSGRTIGQARDLFMHIRTVLTLAKYMLRFALIVSKTI-TLDVDLSE 530
Query: 296 I--EIIPDVKI--EIGKT------KYVFSDGIGKVSAEFARKVA---SKCGLKDNPPSAF 342
+ ++I D E GK + + +DG G +S + A+K SK L + P
Sbjct: 531 VLVKLIDDEPCLDEHGKEVFRDGERLIHTDGTGLISEDLAQKCTYSNSKGKLLEPQPLLI 590
Query: 343 QIR--YGG--YKGVVAADP-TSSKKLSLRDSMRKYES--------ELTKLDVLAWSKYQP 389
Q+R Y G KG V D + + +R SM K ++ + LD+++ +
Sbjct: 591 QLRLFYNGSAVKGTVLVDKRLPPRTIHIRPSMLKIKTYPELSGVQSVNSLDIVSARNAKK 650
Query: 390 ----------------------CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 427
F + LI+LL G+ +E F + + A+ + D D
Sbjct: 651 SLSGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGVPEEFFMELLQTAIEEADNARFD 710
Query: 428 PLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR--TKTRIF 485
A + E++ + +I P E +L L LLE + +I
Sbjct: 711 YAGALNIAFNYADMEDS--MPARMILSGIPLEESYLQSRLDFL---SLLERKGIKNGKIP 765
Query: 486 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 545
I + +MG D T L +V V + Y Q+ G+ V+V K
Sbjct: 766 IDDCYYLMGTADPTGKLGPNEVCVILD---YGQVSGD------------------VLVYK 804
Query: 546 NPCLHPGDVRVLKAVNVPALHHMVD----CVVFPQKGMRPHPNECSGSDLDGDIYFVCWD 601
P LHPGD+ VLKA + +V ++FP G R +E + SD DGDIY+V +
Sbjct: 805 YPGLHPGDIHVLKATYSSDIGKVVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLN 864
Query: 602 DELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEE-------------------YFTNYIVN 642
+L+ P + PA + ED E Y
Sbjct: 865 PKLLE-HFKPSKPWVPAITPNGTKQKGPEDFNESELERVLFHEFLKTRFAPSYARATAAT 923
Query: 643 DSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDF 702
+ L + TV D +K + L+L + + +A+D PK G IP L VK+YP F
Sbjct: 924 NWLVYMDRLLTVSLDESEKKLIEKKMLKLVDLYYLALDAPKMGNKVNIPRDLMVKQYPHF 983
Query: 703 MEKPDKPTYESQNVIGKLFRAVKDIAP 729
M++ P+Y S +++GK++ D P
Sbjct: 984 MDR--SPSYHSSSILGKIYDKAGDPKP 1008
>gi|308161550|gb|EFO63991.1| RNA-directed RNA polymerase, putative [Giardia lamblia P15]
Length = 1999
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 121/493 (24%), Positives = 214/493 (43%), Gaps = 123/493 (24%)
Query: 261 WMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKV 320
W+G+ E++ K R G F S T+ V + ++++ D + YVF+DG G++
Sbjct: 429 WLGDINEVQ-ACKICTRRGLCFGKSLPTIKVREEHVQVVADRQY----NNYVFTDGAGEI 483
Query: 321 SAEFARKVA--------------------------------SKCGLKDN---------PP 339
S + ++A + L+ N P
Sbjct: 484 SYDLMLEIALCLNKLKVEQLNKNTETHYLDEFADTSEDTEQNMSHLQPNLKTISNLIQVP 543
Query: 340 SAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKY------ESELTKLDVLAWSKYQPCFL 392
SA Q+R+ G KGV+ + K + L +S K+ E++ T +++L ++ +
Sbjct: 544 SAVQMRWAGAKGVLILNALLPPKTILLHNSQIKFSIPNPTETQQT-IEILRVAQPSKGMI 602
Query: 393 NRQLISLLSTLGIWDEIF----EKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENT--- 444
N Q+I LLS +G+ D++F + ++A+ L+ I D + Q L +L+S ++
Sbjct: 603 NMQIIVLLSEMGVPDDVFLNLVYQDLQKALLFLEPI--DRCRYQADLYQLVSRTSHSPSG 660
Query: 445 NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNY 504
I+ ++L+ G EP L +L + +L ++ R +P+ R +G D L
Sbjct: 661 KIILQMLMAGVDI-IEPCLQFILMKLQLMQLRSMKANMRFSVPDSRIFVGIYDCFDLLKE 719
Query: 505 GQVFVQI----SGAGYRQLHGESSLFSSSRSRQRFI------------------VQGLVV 542
G+V++ + S + + ++F+ ++ R+ + V+G V+
Sbjct: 720 GEVYIGLQEPLSISKWTATTHLKAIFNDTQ-RESLLPPDLNLHISDVVGLDISCVEGRVI 778
Query: 543 VAKNPCLHPGDVRVLKAVNV-----------------------PALHHMVDCVV-FPQ-- 576
VAKNPC + GDVR+ +AVN+ A+ M V+ FP+
Sbjct: 779 VAKNPCFYRGDVRIYQAVNIFERLKQETSRQKLKAVLPSFVTREAIRGMYRGVICFPKYY 838
Query: 577 KGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQI-----ED 631
+G RP + SGSDLDGDIY+V WD L+ Q +Y PA ++ I +D
Sbjct: 839 EG-RPMTDCLSGSDLDGDIYWVSWDASLLGTIQ---REYEPASFQARPGEIDICTPDLKD 894
Query: 632 VEEYFTNYIVNDS 644
+E N + DS
Sbjct: 895 IEAGLGNLLRIDS 907
>gi|42569166|ref|NP_179582.2| RNA-dependent RNA polymerase family protein [Arabidopsis thaliana]
gi|322967571|sp|O82189.2|RDR4_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 4;
Short=AtRDRP4; AltName: Full=RNA-directed RNA polymerase
4
gi|330251849|gb|AEC06943.1| RNA-dependent RNA polymerase family protein [Arabidopsis thaliana]
Length = 927
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 161/677 (23%), Positives = 276/677 (40%), Gaps = 140/677 (20%)
Query: 137 DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS 196
D G + ++ V P Y R+ +F + L D+++ + L
Sbjct: 209 DSGKTHYYQCHVAPDGSY----------RLKGYFLENTGTHLHKVLGDDNVLTVRFDQL- 257
Query: 197 PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAF------------SSSQLR---- 240
P+ S+ D Y++ +NGI++G R+++F F S+ Q++
Sbjct: 258 PKESTYCD----NPYSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFI 313
Query: 241 ---ESSAWMFASRYGLTAAEIREWMGNFREIRNV---AKYAARLGQSFSSSKETLSVHMD 294
+++ + Y L+ I E +F + + A Y AR S +K+ L V M
Sbjct: 314 RTGSTASSDMENPYILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKK-LEVDMT 372
Query: 295 EIEIIP------------DVKIEIGKTKYVFSDGIGKVSAEFAR----KVASKCGLKDN- 337
EI ++ DV + GK + + SDG G +S + AR + ++ N
Sbjct: 373 EITVMQIDDIHCHDQSNNDVLDKNGKPR-IHSDGTGYISEDLARMCPLNIFKGKSMRSNN 431
Query: 338 --------PPSAFQIRY----GGYKGVVAADPT-SSKKLSLRDSMRK-YE-------SEL 376
PP QIR KG+ + + + +R SM K Y+ S
Sbjct: 432 IQGTCVQEPPLLIQIRMFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTF 491
Query: 377 TKLDVLAWSKY-QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL 435
L+V+ S + L++ L++LLS G+ ++ F + + I A +A
Sbjct: 492 NSLEVVTTSNPPKRAKLSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAA 551
Query: 436 ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRT----KTRIFIPNGRS 491
++ N L ++++ G P EP+L L SKLL+L ++ I
Sbjct: 552 LHYGNMDDKNAL-QMIMAGI-PLDEPYLKHYL-----SKLLKLEKDDLKAGKLPIDESYY 604
Query: 492 MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 551
+MG +D T L +V SG Q V+V +NP LH
Sbjct: 605 LMGTVDPTGELKEDEV----SGLAKSQD---------------------VLVYRNPGLHF 639
Query: 552 GDVRVLKAVNVPALHHMVD----CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI-- 605
GD+ +LKA V +L V V FPQKG R +E +G D DGD+YF+ + +L+
Sbjct: 640 GDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEH 699
Query: 606 -----PPQQDPPMD--YTPAQSMQLDHDVQIEDVEEYF--TNYIVNDSLGIIANAHTVFA 656
P P YT Q +L + E++ + F T + + +G A++
Sbjct: 700 YKPSEPWVSSSPRSKIYTGRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIM 759
Query: 657 DR---------EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPD 707
DR + + + L+L + + A+D PKTG +P + V +P +ME+
Sbjct: 760 DRFLTLGDENVKEKAEMKKKMLKLTDIYYDAIDAPKTGTEVNLPLDVKVDLFPHYMER-- 817
Query: 708 KPTYESQNVIGKLFRAV 724
T++S +++G +F V
Sbjct: 818 NKTFKSTSILGLIFDTV 834
>gi|115400193|ref|XP_001215685.1| predicted protein [Aspergillus terreus NIH2624]
gi|114191351|gb|EAU33051.1| predicted protein [Aspergillus terreus NIH2624]
Length = 1285
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 121/462 (26%), Positives = 186/462 (40%), Gaps = 66/462 (14%)
Query: 278 LGQS----FSSSKETLSVHMDEIEIIPDVKIEIGKT--KYVFSDGIGKVSAEFARKVASK 331
+GQS F + LS + +++ P+ I + + V +DG +S A+K+
Sbjct: 573 MGQSNCKLFQRTSLGLSKTFETVKLTPNQIIHLKDEPGRPVMNDGCALMSRGLAKKICVI 632
Query: 332 CGLKDNPPSAFQIRYGGYKGVVAADPTSSKK------LSLRDSMRKY-----------ES 374
G+ + PSAFQ R G KG+ D S L + DS K +
Sbjct: 633 LGITGSIPSAFQGRIAGAKGLWMVDKHDSDVSEEDIWLQISDSQLKIKPHPAEWKTLIDP 692
Query: 375 ELTKLDVLAWSK-YQPCFLNRQLISLLSTLG----------------IWDEIFEKKQREA 417
E +V+ WSK P LN QL+++L G IW + E +R
Sbjct: 693 EKLTFEVVKWSKPLHPVSLNIQLLAILERGGPVRERIAELTRAGMQSIWKDFAEVLERNC 752
Query: 418 ---VRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASK 474
R L P + +E + N+ + L G+KP + +L L+
Sbjct: 753 PILCRSLIQKTKPPGEQDRRMEDWA-ASNSECVIRLCEAGFKPRSFRYLRHRLRNCLREL 811
Query: 475 LLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQR 534
L + I +P D L +V S + +R G+ F +
Sbjct: 812 LERYENELHIEVPLSTYAFCIADPYGVLKPDEVHFGFS-SNWRDPQGQ---FEDN----- 862
Query: 535 FIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDG 593
++ G+ V+VA+ P P D++ ++AV P L H D +VFP G P ++ SG D DG
Sbjct: 863 -LLDGMDVLVARVPAHFPSDIQRVRAVWKPELRHFKDVIVFPTTGDVPLAHKLSGGDYDG 921
Query: 594 DIYFVCWDDELIPPQQ--DPPMDYTPAQSMQLDHDVQIED---VEEYFTNYIVND----S 644
D +VCWD E++ Q D P +Y P +H V + D V+E+ + I + S
Sbjct: 922 DTPWVCWDQEIVQNFQNSDLPREYPPEHFGLTNHSVPMRDIQSVDEFLQSAITYNLTLSS 981
Query: 645 LGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGV 686
LG H A E S ++LA S VD K G
Sbjct: 982 LGKCTIEHERLAYDE--SIGSPNAMKLASLLSHLVDARKAGT 1021
>gi|3687227|gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
Length = 966
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 145/587 (24%), Positives = 239/587 (40%), Gaps = 104/587 (17%)
Query: 210 IYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIR 269
+Y+ +NGI++G R++ F F E + S G+ IR +++
Sbjct: 267 LYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDV--STKGVKCYFIRTDSTASIDMQ 324
Query: 270 NVAKYA------ARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY--VFSDGIGKVS 321
N +A AR+ ++ +L +M I D K + K + SDG G +S
Sbjct: 325 NPYIFAGKSMHEARMHFMHVNTLSSLPNYMSRYSIDQDDKDVLDKNGKPCIHSDGTGYIS 384
Query: 322 AEFAR---------------KVASK---------CGLKDNPPSAFQIR--YGGYKGVVAA 355
+ AR + SK CG PP Q R Y GY V
Sbjct: 385 EDLARMCPVNIFKGKSMRSNNIQSKNLNFEGQGPCG--QEPPLLIQFRIFYNGY--AVKG 440
Query: 356 DPTSSKKL-----SLRDSMRK-YE-------SELTKLDVLAWSKY-QPCFLNRQLISLLS 401
++KKL +R SM K YE S L+V+ S + L+R L++LLS
Sbjct: 441 TFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNLVALLS 500
Query: 402 TLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEP 461
G+ ++ F R + + I A +A ++ G++ ++++ G P EP
Sbjct: 501 YGGVPNDFFLNILRNTLEESKTIFYSERAAFKAA--INYGDD-QYTADMILVGI-PLDEP 556
Query: 462 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG 521
+L L ++ L+ R I +MG +D T L ++ V +
Sbjct: 557 YLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVDPTGELKENEICVILHSGQ------ 609
Query: 522 ESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD----CVVFPQK 577
+ G V+V +NP LH GD+ VLKA V AL V V FPQK
Sbjct: 610 ---------------ISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQK 654
Query: 578 GMRPHPNECSGSDLDGDIYFVCWDDELIP---------PQQDPPMDYTPAQSMQLDHDVQ 628
G R +E +G D DGD+YF+ + +L+ P Y + +L +
Sbjct: 655 GPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEEL 714
Query: 629 IEDVEEYF--TNYIVNDSLGIIANAHTVFAD---------REPRKARSEPCLQLAEKFSI 677
E++ + F + D +G+ A+ D + + R + L+L + +
Sbjct: 715 EEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYD 774
Query: 678 AVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAV 724
A+D PK G ++PP L +K +P +ME+ K + S +++G +F V
Sbjct: 775 ALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTV 821
>gi|322695803|gb|EFY87605.1| Rnai Polymerase [Metarhizium acridum CQMa 102]
Length = 685
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 149/333 (44%), Gaps = 57/333 (17%)
Query: 313 FSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKG--VVAADPTSSKKLSLRDSMR 370
+DGIG++S A K+ASK GL + P AFQ R GG KG ++ +DP L D +
Sbjct: 1 MNDGIGRISKALAMKIASKLGLTE-LPCAFQARLGGAKGMWIIDSDPI----LGDGDWIV 55
Query: 371 KYESELT-----------KLDVLAWSKY-QPCFLNRQLISLLSTLGI-----WDEIFEKK 413
Y S++ +V WSK +P LN+Q I +L I D I
Sbjct: 56 TYASQIKWDCDHEDSHHRTFEVKEWSKEPRPASLNQQFIPVLEARAINPYKMRDTISAHL 115
Query: 414 QREAVRQLDAILT------------------DPLKAQEALELMS--PGENTNILKELLIC 453
+R + +L A T P ++ + P + ++ LL
Sbjct: 116 RRGLLEELAAQRTAMEDSAELRLWLQQGGGSKPEGLDNSMAFLGCLPRDPKKVMAVLLDS 175
Query: 454 GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISG 513
G+ P + +L + + + L+ K +I +P ++ +D + TL +V V S
Sbjct: 176 GFHPKSCKYLQDLFRDAARDRAAFLKAKMKICVPCSAYLLMVVDFSSTLEEDEVHVSFST 235
Query: 514 AGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCV 572
Q+ G F + +++G+ V+VA+ P P D++ +K V+ P L H+ D +
Sbjct: 236 KF--QVDG----FCDT------LLEGMDVLVARAPSHLPSDIQRVKVVSRPQLRHLKDVI 283
Query: 573 VFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
VF KG ++ SG D DGD +VCWD E++
Sbjct: 284 VFSTKGRSSLADKLSGGDYDGDRAWVCWDQEIV 316
>gi|333440980|gb|AEF32765.1| RdRP2 [Ascaris suum]
Length = 384
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 134/310 (43%), Gaps = 58/310 (18%)
Query: 138 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 197
DG V +V +TP+R+ PE+ + NRVLR D LR+ F D+D ++ + P
Sbjct: 87 DGYRRVRKVVLTPTRMLLVVPELLMGNRVLRTHDESGDRALRVQFRDDDGTRMKHNTVGP 146
Query: 198 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAE 257
I T + + L G+ I DR F +LA S+SQ+R++ + F G
Sbjct: 147 ----------YLIQTTVHNALVRGVYIADRHFVYLASSNSQMRDNGCYFFDDGDGGXXXX 196
Query: 258 IREWMGNFREIRNVAK---------------YAARLGQSFSSSKETLSVHM------DEI 296
AR+GQ F+ +KE S+ +
Sbjct: 197 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMARMGQCFTQAKEC-SIKLLHRRYNKTF 255
Query: 297 EIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAAD 356
+II ++ Y FSDG G++S EFA+++A L PS FQIR+ G KGVV+ D
Sbjct: 256 DIIGG--MDSSGEPYTFSDGCGRLSPEFAQRIADDLHLGKCVPSCFQIRFRGIKGVVSVD 313
Query: 357 PTSSKKLS-----------------------LRDSMRKYESELT-KLDVLAWSKYQPCFL 392
P +++ S R S K+ + L+ K++++ +S P L
Sbjct: 314 PWLTERASWATEHNIADNMENYNKKNKLYMLFRPSQDKFHAPLSHKIEIVKYSSPTPVCL 373
Query: 393 NRQLISLLST 402
NR I++L T
Sbjct: 374 NRPYIAILLT 383
>gi|156374435|ref|XP_001629812.1| predicted protein [Nematostella vectensis]
gi|156216821|gb|EDO37749.1| predicted protein [Nematostella vectensis]
Length = 110
Score = 101 bits (252), Expect = 2e-18, Method: Composition-based stats.
Identities = 51/124 (41%), Positives = 68/124 (54%), Gaps = 15/124 (12%)
Query: 479 RTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ 538
+T+ R+ +P R + G D L G+ + + S+F F
Sbjct: 1 KTRLRVLVPKSRMVFGVCDPYEVLRQGECYFR------------PSIFDEDEGD--FQAA 46
Query: 539 GLVVVAKNPCLHPGDVRVLKAV-NVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYF 597
V V +NPC HPGDVRVLK V N P L+H+ DC+VFP +G RPH ECSG+D+DGD +F
Sbjct: 47 NKVAVIRNPCYHPGDVRVLKLVRNKPELNHLRDCIVFPVRGRRPHALECSGADMDGDKFF 106
Query: 598 VCWD 601
V WD
Sbjct: 107 VTWD 110
>gi|449436040|ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 184/784 (23%), Positives = 316/784 (40%), Gaps = 190/784 (24%)
Query: 113 RWLTDQYRKYMTSRSKPSSPA--ISLDDGLVYVHRVQVT-PSRVYFCGPEINVSNRVLRH 169
RWL + S S PS + D +++ V F GP +N + L+
Sbjct: 234 RWLGWELVSVTHSESLPSYLVQYVDWDRRKTHIYHCHVALDGSCRFKGPFLNNTKTHLQR 293
Query: 170 FRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKF 229
D DN L + F ++ D T LS + Y++I R+GIL+G R++
Sbjct: 294 VLGD-DNVLMVKFAEDKSD----TPLSNHSGGSF-----YAYSKIA---RDGILLGLRRY 340
Query: 230 EFLAF------------SSSQLR------ESSAWM-------FASRYGLTAAEIREWMGN 264
F F ++S ++ ES A++ ++R T E R +
Sbjct: 341 HFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNR---TVFEARSLFMH 397
Query: 265 FREIRNVAKYAAR----LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY------VFS 314
+ ++A Y AR L ++ + + +V++ I IP I G Y + +
Sbjct: 398 AHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDI-YGNVIYRDGKPLIHT 456
Query: 315 DGIGKVSAEFA----------------------RKVASKCGLKDN-------------PP 339
DG G +S + A +++ + G ++ PP
Sbjct: 457 DGTGFISEDLALECPMNVFKGQAKHDADLKAIWQRIPAFEGFQNKTLQLTLPGLELREPP 516
Query: 340 SAFQIR--YGGY--KGVVAADPT-SSKKLSLRDSMRK---------YESELTKLDVLAWS 385
Q R Y G KG + + + +RDSM K +E+E + V +
Sbjct: 517 LLIQFRLFYNGLAVKGTFLLNKQLPPRTIQIRDSMIKVEIDPDLENFETENSLELVGTSN 576
Query: 386 KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL-MSPGENT 444
+ FL+R LI+LL+ G+ E F +A++ + + + + AL + ++ GE
Sbjct: 577 PPKRTFLSRNLIALLNYGGVPREYFMNILVDALKDVQGVFSS---KRAALRVSINNGEMD 633
Query: 445 NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT----RIFIPNGRSMMGCLDETR 500
+ L +I P E +L +R S LL+ K+ R+ +P +MG +D T
Sbjct: 634 DFLVARMILAGIPLDESYLQ-----YRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTF 688
Query: 501 TLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAV 560
TL G+V V + + G V+V +NP LH GD+ VL A
Sbjct: 689 TLESGEVCVILYNGQ---------------------INGKVLVYRNPGLHFGDIHVLTAK 727
Query: 561 NV----PALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYT 616
V P + + + F KG R +E +G D DGD+Y+V + +L+ + P +
Sbjct: 728 YVEKLVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEYFR-PCEPWR 786
Query: 617 PAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIAN-------AHTVFAD------------ 657
P+ S ++ V + +E+ + + N+ + + A +V AD
Sbjct: 787 PSPSTEV---VTNKKPKEFSADELENELFKLFLSTRFQPSYAKSVAADNWLALMDQFLML 843
Query: 658 ----REPRKARSEPCLQLAEKFSIAVDFPKT-GVPAEIPPHLYVKEYPDFMEKPDKPTYE 712
+E R LQL + A+D PK G E+P HL P FME+ K +Y
Sbjct: 844 GEERKEERNCIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHFMER-GKNSYV 902
Query: 713 SQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDG---FEDHIDDAIYHKGNY 769
S +++G++F D A ++ +EV P++EV FE+ + + I+ K +
Sbjct: 903 STSILGQIF----DTA------NMYQEEV------PNIEVQKLPCFEEELPEYIFMKWKF 946
Query: 770 DYKL 773
Y+L
Sbjct: 947 LYEL 950
>gi|336378305|gb|EGO19463.1| hypothetical protein SERLADRAFT_442939 [Serpula lacrymans var.
lacrymans S7.9]
Length = 733
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 153/600 (25%), Positives = 235/600 (39%), Gaps = 142/600 (23%)
Query: 288 TLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS------KCGLKDNPPSA 341
TL VH EI I D +G V +DG G +S +V S K N PSA
Sbjct: 109 TLEVH--EISQIDDRISPVGN---VMTDGCGTISVALCNEVWSSLRNRKKHKHVKNVPSA 163
Query: 342 FQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESE-LTKLDVLAWSKYQP--CFLNRQLI 397
+Q R GG KGV+ DP + LR S K+++ + LD+ + S QP FLNR LI
Sbjct: 164 YQFRIGGAKGVLVQDPRLEGNVVCLRPSQTKFDAPGIRTLDIQSTSS-QPKAMFLNRPLI 222
Query: 398 SLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE---------LMSPGENTNILK 448
LL LG Q A+ + L A + + L S N L
Sbjct: 223 VLLEYLGTDSNHIIALQNNAISEAQTAHNSFLDASKMFQKNNFGASFRLPSLFHNLATLL 282
Query: 449 E---------LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET 499
+ L+ +K D ++ +LQ L EL+ + I +P +++G DE
Sbjct: 283 DIHPGDSSLGLVSTSWKHD---LVAKLLQCVSTYALRELKYRAHIAVPGSYTLLG--DE- 336
Query: 500 RTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 559
+ L+ S ++G V++ ++ +HPGDV+V+ A
Sbjct: 337 ----------------------RTGLYKS--------IEGRVLITRSAQIHPGDVQVVTA 366
Query: 560 VNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQ 619
V P L H+ + VVF KG R + G L GD + + D+ L P + P Y
Sbjct: 367 VRHPELSHLTNVVVFSCKGNRSLASCLGGGGLAGDDFNLLLDESLFPKKVAKPGTY---- 422
Query: 620 SMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFAD--REPRKARSEPCLQLAEKFSI 677
DSL I + A + + CLQLA+ S
Sbjct: 423 -----------------------DSLPIKKTINPCSASDIADVKDPGCSECLQLAQYASH 459
Query: 678 AVDFPKTGVPAEIP--PHLYVKEYPDFMEKPDKPT------YESQNVIGKLFRAV----- 724
AVDFPKTG P + P L PDF+ P+ Y S ++G L R V
Sbjct: 460 AVDFPKTGSPVRMKDLPQLSGLSKPDFLA-PEGANIRSDQYYFSPKLLGVLHRRVPLSEW 518
Query: 725 ------KDIAPHT---------SCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNY 769
D +P + I++ K++ P +D + + + +Y
Sbjct: 519 TPTPWNSDDSPSDWKTVWNALHNLIKMKNKQLGLLLIYPS------DDLLKEMTFLLNDY 572
Query: 770 DYKLGNLMDYYGIK-------TEAEILTGSIMKMSKSFTKRRDA-EAIGMAVRALRKEAR 821
+L + + I +EAE+++G+IM + KR +A +++ + + L K R
Sbjct: 573 SEQLFVIAKVHTISRHNDVHVSEAELISGTIMANWSNHRKRSEAVDSMNLQTQVLAKNVR 632
>gi|451845380|gb|EMD58693.1| hypothetical protein COCSADRAFT_194603 [Cochliobolus sativus
ND90Pr]
Length = 1215
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 144/337 (42%), Gaps = 53/337 (15%)
Query: 312 VFSDGIGKVSAEFARKV----ASKCGLKDNPPSAFQIRYGGYKG--VVAADPTSSKKLSL 365
V DG +S A+K+ G+ D PSAFQ R GG KG V++A+ + L
Sbjct: 533 VMDDGCCVMSVGAAKKIWDLYTKATGVTDPLPSAFQGRIGGAKGIWVISAEKFTKDTDHL 592
Query: 366 RDSMRKYESELT------------KLDVLAWSKY-QPCFLNRQLISLLSTLGIWDE---- 408
+ ES+ +V +S P L+ I +L+ G+ E
Sbjct: 593 EPWIEINESQWKFQPPNDQSPYHRTFEVSNYSSTPSPSELHSSFIPILADRGVTKEAISD 652
Query: 409 -IFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKE-----------------L 450
+ + ++E + L+ +L D K E + G NT + +E L
Sbjct: 653 LMLDSLEKERINLLN-VLQDATKVHEWV--YRNGANTKLREETHGRVGQPASLKEKALNL 709
Query: 451 LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQ 510
L G+ P P+L+ L++F S+ + K R+ +P + G D LN G++ +
Sbjct: 710 LESGFDPLKFPYLAQNLESFIMSRQIFQEAKLRVLLPKSTFLYGVADPLGVLNPGEIQIL 769
Query: 511 ISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD 570
S + E +S R + V+VA+ P D++ ++ V P L H+VD
Sbjct: 770 FSWPFVDETTNER--YSDLRDLE-------VLVARQPACRRSDIQKVRTVIHPELSHLVD 820
Query: 571 CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 607
VF KG P + G D DGDI+++CW+D L+ P
Sbjct: 821 VAVFSSKGPFPLAGKLQGGDYDGDIFWICWEDTLVQP 857
>gi|340515396|gb|EGR45650.1| predicted protein [Trichoderma reesei QM6a]
Length = 989
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 98/396 (24%), Positives = 172/396 (43%), Gaps = 57/396 (14%)
Query: 250 RYGLTAAEIREWMGNFREIRN----VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE 305
R + + + +W + RN +AK +RL S S + T+ + ++I ++ +E
Sbjct: 231 RTKMKLSGLLKWAVAIDKERNSQQPIAKLFSRLALSLSRTWPTVVLEKEQI-LVRRKDLE 289
Query: 306 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK--- 362
K V +DGIG++S A+KVA GL D P S FQ R G KG+ D S +
Sbjct: 290 REK---VMNDGIGRISPSLAKKVADALGLSDCP-SCFQGRLGSAKGMWLIDVDSDDERDW 345
Query: 363 LSLRDSMRKYESELT-----KLDVLAW-SKYQPCFLNRQLISLLSTLG--------IWDE 408
+ + S K+E + L++ W S+ + LN+Q I +L + E
Sbjct: 346 VEIYPSQTKWECDFDDPHHRTLEIRNWPSELKSASLNQQFIPILEAQSPEPDGMRRVMAE 405
Query: 409 IFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKE------------------L 450
E+ + + A + +P+ + + P +N +L L
Sbjct: 406 HLERALHADLGEQVAAMKEPMSLRLWIHQSGPSKNDRLLDGSTKFLAGLPDSNADKVAFL 465
Query: 451 LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQ 510
L G+ +L ++ K L+TK I +P + D T TL +V +
Sbjct: 466 LDSGFDQKKMKYLQDIVWDMCKRKADVLKTKMNITVPCSAYIYMAADFTSTLEEDEVHLS 525
Query: 511 ISGAGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMV 569
S ++ FS + +++G+ ++VA+ P P D++ +K V+ P L +
Sbjct: 526 FSTKF------QADGFSDT------LLEGMDILVARVPAHLPSDIQRVKVVSRPELRKLK 573
Query: 570 DCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
D ++F KG P ++ SG D DGD+ +VCWD ++
Sbjct: 574 DVIIFSTKGGVPLAHKLSGGDYDGDMAWVCWDQNIV 609
>gi|361130936|gb|EHL02666.1| putative RNA-dependent RNA polymerase 2 [Glarea lozoyensis 74030]
Length = 902
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 92/183 (50%), Gaps = 32/183 (17%)
Query: 576 QKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEY 635
QKG R P++ SG DLDGD Y++ WD+ P + DY + + V+ ED+ ++
Sbjct: 536 QKGARDLPSKLSGGDLDGDRYYIMWDELARPKRTFAAADYPKVSPVNIGRRVEREDMSDF 595
Query: 636 FTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIP---- 691
F ++ +D LG IA H V AD+ P CL +AE S AVDF KTG+P ++
Sbjct: 596 FLQFMESDQLGRIAVNHRVKADQRPGGTNDPECLLMAEMHSTAVDFSKTGIPVDMSRMPF 655
Query: 692 ------------PHLYVKE---------YPDFMEKPDKPT-------YESQNVIGKLFRA 723
PH++++E + D ME D+ Y+S+ ++GKL+RA
Sbjct: 656 GNKYRPDFEAPGPHVHIEEDGINFDDPTFEDPMEIEDEDDEYSTYRYYKSEKILGKLYRA 715
Query: 724 VKD 726
+ +
Sbjct: 716 IDE 718
Score = 47.0 bits (110), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 35/159 (22%)
Query: 291 VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYK 350
+ + ++ IPDV+ + FSDG+G + K
Sbjct: 384 IDLRHVQEIPDVE----RNGRTFSDGVGTSA----------------------------K 411
Query: 351 GVVAADP-TSSKKLSLRDSMRKYESELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWD 407
G+++ D L +RDSM K+ + + + Y+P +LNRQLI +L +G+ D
Sbjct: 412 GMISLDSRLKGNVLVVRDSMIKFRGSKSADLEICEAAYRPLPMYLNRQLIKILEDMGVED 471
Query: 408 EIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI 446
+ F Q V L A +P+ A + L S GE ++
Sbjct: 472 DYFLNLQAREVESLRAAADNPMSASKFLTKQSIGETVHL 510
>gi|169598368|ref|XP_001792607.1| hypothetical protein SNOG_01986 [Phaeosphaeria nodorum SN15]
gi|111069078|gb|EAT90198.1| hypothetical protein SNOG_01986 [Phaeosphaeria nodorum SN15]
Length = 1428
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/413 (25%), Positives = 163/413 (39%), Gaps = 95/413 (23%)
Query: 269 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK-----------------IEIGKTKY 311
+N K ARL S + TLS +I +PD E
Sbjct: 684 QNFCKAFARLDLGLSRTIPTLSFKPSQIRRMPDTYADRTPEAQEFNDATLDWTEQYDRTP 743
Query: 312 VFSDGIGKVSAEFARKVASKC----GLKDNPPSAFQIRYGGYKGV--VAADPTSSKK--- 362
V +DG +VS A + C G + PS Q R GG KG+ ++A+P +
Sbjct: 744 VMNDGCARVSVGAALLIWKFCQDATGSDEPLPSTLQGRIGGAKGMWMISAEPHTRDPAHL 803
Query: 363 ---LSLRDSMRKYE-SELTKLDVLAWSKYQPCF-------------LNRQLISLLSTLGI 405
+ + DS K+E ++ + D ++ ++ F L+ I +L G+
Sbjct: 804 DIWIEVTDSQLKFEPAQEDQADDRPYNSHRLTFNYIKHSFVNGSSDLHISFIPILVDRGV 863
Query: 406 WDEIFEK----KQREAVRQLDAILTDPLKA-------------------QEALELMSPGE 442
K + + +QL +L DP++ Q AL L P +
Sbjct: 864 QKSTIAKLMISRLDDERKQLLEMLDDPVRLHNWVTKQGSATPALGILPWQAALPLTLPEK 923
Query: 443 NTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL 502
K LL G++P PFL+ L+ F + L + K R + ++G D L
Sbjct: 924 ----AKLLLRTGFQPYQSPFLARTLKRFVQQRQLWMEEKLRAPLGRATYLIGLADPLGIL 979
Query: 503 NYGQVFVQISGA--------GYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDV 554
G+V VQ S YR L GE VV+ + P D+
Sbjct: 980 KPGEVHVQFSKPFLDEYGRNTYRNLAGEE-----------------VVITRQPACRRSDM 1022
Query: 555 RVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 607
+ ++AV+ P L H+VD VVF +G+ P + G D DGD ++VCW+ +L+ P
Sbjct: 1023 QKMRAVSHPQLSHLVDVVVFSSRGIYPAAGKLQGGDYDGDTFWVCWEPDLVVP 1075
>gi|156390354|ref|XP_001635236.1| predicted protein [Nematostella vectensis]
gi|156222327|gb|EDO43173.1| predicted protein [Nematostella vectensis]
Length = 127
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 69/123 (56%), Gaps = 14/123 (11%)
Query: 480 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 539
+K RI +PN R + G D L YGQ +L+ R + + V
Sbjct: 18 SKLRILVPNSRVVFGVCDPFGELEYGQCVFH------------PTLYDEVRIAE-YQVAT 64
Query: 540 LVVVAKNPCLHPGDVRVLKAV-NVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 598
V+V +NPC +PGD+RVLK V N+P ++ DC+VFP KG RPH +E SG DLDGD +FV
Sbjct: 65 EVMVVRNPCYYPGDIRVLKLVKNLPQYAYLNDCIVFPTKGSRPHADESSGGDLDGDEFFV 124
Query: 599 CWD 601
WD
Sbjct: 125 SWD 127
>gi|3687226|gb|AAC62124.1| hypothetical protein [Arabidopsis thaliana]
Length = 905
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 156/677 (23%), Positives = 267/677 (39%), Gaps = 149/677 (22%)
Query: 137 DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS 196
D G + ++ V P Y R+ +F + L D+++ + L
Sbjct: 214 DSGKTHYYQCHVAPDGSY----------RLKGYFLENTGTHLHKVLGDDNVLTVRFDQL- 262
Query: 197 PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAF------------SSSQLR---- 240
P+ S+ D Y++ +NGI++G R+++F F S+ Q++
Sbjct: 263 PKESTYCD----NPYSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFI 318
Query: 241 ---ESSAWMFASRYGLTAAEIREWMGNFREIRNV---AKYAARLGQSFSSSKETLSVHMD 294
+++ + Y L+ I E +F + + A Y AR S +K+ L V M
Sbjct: 319 RTGSTASSDMENPYILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKK-LEVDMT 377
Query: 295 EIEIIP------------DVKIEIGKTKYVFSDGIGKVSAEFAR----KVASKCGLKDN- 337
EI ++ DV + GK + + SDG G +S + AR + ++ N
Sbjct: 378 EITVMQIDDIHCHDQSNNDVLDKNGKPR-IHSDGTGYISEDLARMCPLNIFKGKSMRSNN 436
Query: 338 --------PPSAFQIRY----GGYKGVVAADPT-SSKKLSLRDSMRKYE--------SEL 376
PP QIR KG+ + + + +R SM K S
Sbjct: 437 IQGTCVQEPPLLIQIRMFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTF 496
Query: 377 TKLDVLAWSKY-QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL 435
L+V+ S + L++ L++LLS G+ ++ F + + I A +A
Sbjct: 497 NSLEVVTTSNPPKRAKLSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAA 556
Query: 436 ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRT----KTRIFIPNGRS 491
++ N L+ +I P EP+L L SKLL+L ++ I
Sbjct: 557 LHYGNMDDKNALQ--MIMAGIPLDEPYLKHYL-----SKLLKLEKDDLKAGKLPIDESYY 609
Query: 492 MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 551
+MG +D T L +V V + NP LH
Sbjct: 610 LMGTVDPTGELKEDEVCVIL----------------------------------NPGLHF 635
Query: 552 GDVRVLKAVNVPALHHMVD----CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI-- 605
GD+ +LKA V +L V V FPQKG R +E +G D DGD+YF+ + +L+
Sbjct: 636 GDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEH 695
Query: 606 -----PPQQDPPMD--YTPAQSMQLDHDVQIEDVEEYF--TNYIVNDSLGIIANAHTVFA 656
P P YT Q +L + E++ + F T + + +G A++
Sbjct: 696 YKPSEPWVSSSPRSKIYTGRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIM 755
Query: 657 DR---------EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPD 707
DR + + + L+L + + A+D PKTG +P + V +P +ME+
Sbjct: 756 DRFLTLGDENVKEKAEMKKKMLKLTDIYYDAIDAPKTGTEVNLPLDVKVDLFPHYMER-- 813
Query: 708 KPTYESQNVIGKLFRAV 724
T++S +++G +F V
Sbjct: 814 NKTFKSTSILGLIFDTV 830
>gi|367029127|ref|XP_003663847.1| hypothetical protein MYCTH_2306054 [Myceliophthora thermophila ATCC
42464]
gi|347011117|gb|AEO58602.1| hypothetical protein MYCTH_2306054 [Myceliophthora thermophila ATCC
42464]
Length = 1364
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 151/360 (41%), Gaps = 51/360 (14%)
Query: 285 SKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQI 344
SK T +V + +II + + TK + +DGIG++S ARK+ GL D P SA Q
Sbjct: 640 SKTTPTVTFEPGQIIHRPEDILSPTKKIMNDGIGRMSRSVARKIRDLLGLTDIP-SAVQG 698
Query: 345 RYGGYKGVVAADPT------------SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFL 392
R G KG+ D T S +K + D+ + L V S+ +P L
Sbjct: 699 RIGSAKGMWLMDVTDHGDADWIETYPSQRKWNCDDADEPFHRTLEVRKVA--SELKPASL 756
Query: 393 NRQLISLLSTLGIWDE-----IFEKKQREAVRQLD---AILTDPLKAQEALELMS----- 439
N Q + +L + + I + + +Q + L PL+ ++ + S
Sbjct: 757 NLQFLPVLEDRAVDKKAMRCAISNRLLNDLAKQFEDQKTALKRPLQFRQWVHENSNNNRP 816
Query: 440 --------------PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 485
P + IL L+ G+ P ++ +L + + K LRTK I
Sbjct: 817 ERVKHGQVPFLGGLPADKNEILALLMNSGFDPKSQRYLRDLAWELQKQKCDTLRTKLNIK 876
Query: 486 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 545
+ + +D L +V V S +L G S + V+VA+
Sbjct: 877 VGRSAYIYMVVDFWGVLEENEVHVGFSSKFRDELDGVSYTL---------LADCDVLVAR 927
Query: 546 NPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
+P D++ ++AV P LH + D +VF KG P ++ SG D DGD +VCWD E++
Sbjct: 928 SPAHFVSDIQKVRAVFKPELHALKDVIVFSTKGDIPLADKLSGGDYDGDFAWVCWDPEIV 987
>gi|310799490|gb|EFQ34383.1| RNA-directed RNA polymerase [Glomerella graminicola M1.001]
Length = 1348
Score = 97.8 bits (242), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 109/397 (27%), Positives = 170/397 (42%), Gaps = 59/397 (14%)
Query: 250 RYGLTAAEIREWMGNF--REIRNVAKYAARLGQSFSSSKETLSVHMDEIEII-PDVKIEI 306
R L+ + +W+ F + + K +R+ S + + + D+I I D+ I
Sbjct: 596 RMKLSIYRMLDWLLQFDRNQEQPYLKLFSRIQLGLSKTTPIIVLGRDQIRIQDQDMCSPI 655
Query: 307 GKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK---L 363
GK V +DGIG++S ARK GL D P SA Q R G KG+ D K L
Sbjct: 656 GK---VMNDGIGRMSRSLARKTRDVLGLSDIP-SAIQGRIGPAKGMWLIDIADDKGDLWL 711
Query: 364 SLRDSMRKY-----ESELTKLDVLAWSK--YQPCFLNRQLISLLSTLGIWDE-------- 408
L S RK+ + E L+V A +K C LN Q + +L I E
Sbjct: 712 ELWPSQRKWNCDFGDPEHRTLEVRAHAKDPGSAC-LNIQFLPVLEDRAINKEAMREVIGK 770
Query: 409 -IFEKKQREAVRQLDAILTDPLKAQEALELMS------------------PGENTNILKE 449
+ ++ R+ Q DA + PL+ ++ + S P N I+
Sbjct: 771 SLVDELNRQLEEQKDA-MKYPLQFRQWISQTSSTRTQRLAHGHVPYMGGLPESNEEIMNS 829
Query: 450 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFV 509
L+ G+ P + +L + R S L+ K I + N + +D L G+V +
Sbjct: 830 LIDAGFDPRRQRYLQELAWNLRYSLCESLKKKMSIKVSNSAYLFMVVDFWNVLEEGEVHL 889
Query: 510 QISGAGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHM 568
S ++ FS S I+ G V+VA++P D++ +KAV P LH +
Sbjct: 890 CFSS------KFQTDTFSDS------ILHGCDVLVARSPAHFVSDIQRVKAVFKPELHTI 937
Query: 569 VDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
D +VF KG P ++ SG D DGD +VCW+ ++
Sbjct: 938 KDVIVFSAKGNVPLADKLSGGDYDGDKAWVCWEPAIV 974
>gi|251765120|sp|Q5QMN4.2|RDR4_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 4; Short=OsRDR4
Length = 1183
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 143/586 (24%), Positives = 226/586 (38%), Gaps = 125/586 (21%)
Query: 239 LRESSAWMFASRY---GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDE 295
+R S W Y G T + R+ + R + +AKY R S + TL V + E
Sbjct: 477 VRTESGWNMDEPYILSGRTIGQARDLFMHIRTVLTLAKYMLRFALIVSKTI-TLDVDLSE 535
Query: 296 I--EIIPDVKI--EIGKT------KYVFSDGIGKVSAEFARK------------------ 327
+ ++I D E GK + + +DG G +S + A+K
Sbjct: 536 VLVKLIDDEPCLDEHGKEVFRDGERLIHTDGTGLISEDLAQKCTYSNSKGKLLEPQDIVD 595
Query: 328 -VASKCGLKDNP---PSAFQIR--YGG--YKGVVAADP-TSSKKLSLRDSMRKYES---- 374
ASK +N P Q+R Y G KG V D + + +R SM K ++
Sbjct: 596 CAASKLMGSNNTTEYPLLIQLRLFYNGSAVKGTVLVDKRLPPRTIHIRPSMLKIKTYPEL 655
Query: 375 ----ELTKLDVLAWSKYQP----------------------CFLNRQLISLLSTLGIWDE 408
+ LD+++ + F + LI+LL G+ +E
Sbjct: 656 SGVQSVNSLDIVSARNAKKSLSGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGVPEE 715
Query: 409 IFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQ 468
F + + A+ + D D A + E++ + +I P E +L L
Sbjct: 716 FFMELLQTAIEEADNARFDYAGALNIAFNYADMEDS--MPARMILSGIPLEESYLQSRLD 773
Query: 469 TFRASKLLELR--TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLF 526
LLE + +I I + +MG D T L +V V + Y Q+ G+
Sbjct: 774 FL---SLLERKGIKNGKIPIDDCYYLMGTADPTGKLGPNEVCVILD---YGQVSGD---- 823
Query: 527 SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD----CVVFPQKGMRPH 582
V+V K P LHPGD+ VLKA + +V ++FP G R
Sbjct: 824 --------------VLVYKYPGLHPGDIHVLKATYSSDIEKVVGNSKHAILFPTTGQRSL 869
Query: 583 PNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEE-------- 634
+E + SD DGDIY+V + +L+ P + PA + ED E
Sbjct: 870 ADEMANSDFDGDIYWVSLNPKLLE-HFKPSKPWVPAITPNGTKQKGPEDFNESELERVLF 928
Query: 635 -----------YFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPK 683
Y + L + TV D +K + L+L + + +A+D PK
Sbjct: 929 HEFLKTRFAPSYARATAATNWLVYMDRLLTVSLDESEKKLIEKKMLKLVDLYYLALDAPK 988
Query: 684 TGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAP 729
G IP L VK+YP FM++ P+Y S +++GK++ D P
Sbjct: 989 MGNKVNIPRDLMVKQYPHFMDR--SPSYHSSSILGKIYDKAGDPKP 1032
>gi|224148789|ref|XP_002336714.1| hypothetical protein POPTRDRAFT_593566 [Populus trichocarpa]
gi|222836572|gb|EEE74979.1| hypothetical protein POPTRDRAFT_593566 [Populus trichocarpa]
Length = 196
Score = 97.1 bits (240), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 83/159 (52%), Gaps = 2/159 (1%)
Query: 648 IANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPD 707
I +H V AD A E CL LAE + +VDFPKTG +P L K YPDFM K +
Sbjct: 25 IPKSHVVHADLSEYGALDEKCLTLAELAATSVDFPKTGKIVSMPSDLKPKIYPDFMGKEE 84
Query: 708 KPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRS--YDPDMEVDGFEDHIDDAIYH 765
+Y+S+ ++G+L+R +KD R YD D+EV G D I DA
Sbjct: 85 HQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRGDIPYDLDLEVPGVTDFISDAWDQ 144
Query: 766 KGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRR 804
K +YD +L L+ Y +K E E++T + M K ++++
Sbjct: 145 KCSYDGQLNGLLAQYKVKREEEVVTWHVWSMPKGSSRKQ 183
>gi|345568648|gb|EGX51541.1| hypothetical protein AOL_s00054g240 [Arthrobotrys oligospora ATCC
24927]
Length = 1615
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 133/535 (24%), Positives = 215/535 (40%), Gaps = 107/535 (20%)
Query: 273 KYAARLGQSFSSSKETLSVHMDEIEI-IPDVK---IEIGKT----KYVFSDGIGKVSAEF 324
K AR+ FS++ ++ +EI+ I D+K +E+G+ +Y +DG G S
Sbjct: 861 KLYARIALGFSTTTPSVVFDKNEIDYSIKDIKAKGLELGRDGKLPEYSLTDGCGLASPAV 920
Query: 325 ARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-----SSKKLSLRDSMRKY-----ES 374
R VA + GL PPSA Q R G KG+ DP+ ++ +R K+ E
Sbjct: 921 FRAVARQLGLP-YPPSAVQARIGAAKGLWIMDPSIPLDSEELRIRIRPDQNKFDGISLEP 979
Query: 375 ELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 433
E LD+ SK +P LN Q I +L G+ + E+ RE +R E
Sbjct: 980 EHRTLDICNTSKPLKPSALNLQFIVILLHNGVTEATLEQLLREDIRN------------E 1027
Query: 434 ALELMSPG--ENTNILKELL----ICGYKPDAEPF---------------------LSMM 466
EL + G ++ L++ L + G + D ++
Sbjct: 1028 VTELFNGGRLDDGAFLRKYLERVKLSGSQRDGRAIAMKGRIPLGLAERAIDLINAGFTLQ 1087
Query: 467 LQTFRA--SKLLE-----LRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQL 519
QT + K+L L+ K RI IP D + L GQV+++
Sbjct: 1088 NQTLKDWFEKVLTDHCDTLKDKMRIRIPWSCQPYCVPDPSGKLKKGQVYLRF-------- 1139
Query: 520 HGESSLFSSSRSRQRF-IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVF---P 575
G S F ++ +++G V+V +NP D++ + AV+VP L + D +VF P
Sbjct: 1140 -GPESKFIDPKTMMAIDVLRGGVLVGRNPAHFASDIQKVTAVDVPELRFLTDVIVFPADP 1198
Query: 576 QKGMRPHPNECSGSDLDGDIYFVCWDDELI----------PPQQDPPMDYTPAQSMQLDH 625
+ R + SG D DGD + CWD L+ P D + P + M +
Sbjct: 1199 ESNDRSLADYLSGGDYDGDRVWTCWDQRLVGEFKGELVHGPSTVDMVGYFEPERKMMWED 1258
Query: 626 DVQIEDVEEYFTNYIVN--------DSLGIIANAHTVFADREPRKARSEPCLQLAEKFSI 677
++ + F+N+I + LG + R L++A+K +
Sbjct: 1259 FGGSDESPDAFSNFIQKHLETAMDEELLGQCTSLFEKVVYNNYGDERGVLNLEIAKKLGV 1318
Query: 678 A----VDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTY---ESQNVIGKLFRAVK 725
A VD PK G+ ++ Y K + + + P Y E V KLF++ K
Sbjct: 1319 ACGMLVDAPKQGIRLKL---AYWKIWKNTYKDTQLPFYKLSEKDLVTRKLFKSAK 1370
>gi|119479435|ref|XP_001259746.1| RNA-directed RNA polymerase, putative [Neosartorya fischeri NRRL 181]
gi|119407900|gb|EAW17849.1| RNA-directed RNA polymerase, putative [Neosartorya fischeri NRRL 181]
Length = 1338
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 117/473 (24%), Positives = 188/473 (39%), Gaps = 78/473 (16%)
Query: 273 KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC 332
K R+ S + T+++ +I + DV + V +DG +S A + +
Sbjct: 622 KLFQRISLGLSKTYATIALKPWQILHLGDVP-----NRPVMNDGCALMSRRLANAICDQL 676
Query: 333 GLKDNPPSAFQIRYGGYKGVVAADPTSSK--------KLSLRDSMRKYE----------- 373
G+ N PSAFQ R G KG+ D +S + + DS K +
Sbjct: 677 GITGNTPSAFQGRIAGAKGLWMVDRHNSGISGGGDDFWIQISDSQLKIQPHPQAWREPID 736
Query: 374 SELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 432
E +V+ WSK P LN QL+++L G E + R +R + L++
Sbjct: 737 DEKLTFEVVKWSKPLHPVELNTQLLAILEHGGQVREYIAELTRAGIRAISQDFASVLES- 795
Query: 433 EALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFR------------ASKLLELRT 480
N+ L LI KP A+ S M Q + +L E
Sbjct: 796 ----------NSAALCRSLIQKIKPMADDGSSGMSQRMKRLEQWTANDAEAIIRLTEAGF 845
Query: 481 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR-------------QLH-GESSLF 526
R F P + + CL + ++ +++ + Y ++H G S+ +
Sbjct: 846 ALRSFYPLRKRLGRCLRDLLDRYADELHIEVPLSTYAFCIADPYGVLKEDEVHFGFSNNW 905
Query: 527 SSSRSR-QRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPN 584
+R + + ++ G+ V+V + P P D++ +AV P L H D +VFP G P +
Sbjct: 906 RDARGQFEDNLLDGVDVLVGRLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTTGDIPLAH 965
Query: 585 ECSGSDLDGDIYFVCWDDELIPPQQD---PPMDYTPAQSMQLDHDVQIEDVEEY------ 635
SG D DGD ++CWD ++ Q+ P +Y P H V + D+E
Sbjct: 966 MLSGGDYDGDTPWICWDQNIVQRFQNSDLPTEEYPPEHFGLTKHSVSMRDIESTDEFLQS 1025
Query: 636 -FTNYIVNDSLGIIANAHTVFA-DREPRKARSEPCLQLAEKFSIAVDFPKTGV 686
FT + +LG H A D AR++ +LA S VD K GV
Sbjct: 1026 AFTFNLTTSNLGRCTLEHEKIAYDESIDSARAK---ELACLLSHLVDGRKGGV 1075
>gi|258570921|ref|XP_002544264.1| predicted protein [Uncinocarpus reesii 1704]
gi|237904534|gb|EEP78935.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1348
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 127/503 (25%), Positives = 185/503 (36%), Gaps = 101/503 (20%)
Query: 299 IPDVKIEIGK------TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV 352
IP V + G+ + V +DG +SA A ++ S GLKD PS FQ R G KG+
Sbjct: 668 IPTVVVRPGRIVRRKDAEIVMNDGCALMSASLANEIKSCLGLKDENPSCFQGRIAGAKGI 727
Query: 353 VAADPTSSKK---LSLRDSMRKYESELTK-----------LDVLAWSK-YQPCFLNRQLI 397
D S + + DS K + +K +V++WS+ +P LN QL+
Sbjct: 728 WMVDNADSNGDSWIEISDSQLKIKPHPSKCKIMLDDYQLTFEVVSWSRELRPVNLNVQLL 787
Query: 398 SLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMS------------------ 439
+L G+ + + +E VR+ + K E++S
Sbjct: 788 MVLQHGGVQTD----RLKELVRRESSAWYADFKNTITNEIVSRGWIQKQGLYDRRKTRRI 843
Query: 440 ---PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL 496
P EN LL G+ P +L +L TF L + +I IP
Sbjct: 844 DDFPTENAEQAILLLDSGFHPLRLAYLKELLTTFLKDYCNRLDS-LKIRIPESTYAYCIA 902
Query: 497 DETRTLNYGQVFVQISGA----GYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 552
D L +V S GY L G V++ +NP P
Sbjct: 903 DPYEVLAEDEVHFGFSKPWESYGYTDLDGVD-----------------VLLGRNPAHLPN 945
Query: 553 DVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPP 612
D++ +AV L H D +VFP G P SG D DGD +VCWD EL+ + P
Sbjct: 946 DIQKRRAVFKKELRHFKDVIVFPTVGKVPLAGMLSGGDYDGDQVWVCWDPELVNTFINTP 1005
Query: 613 MDYTPAQSMQLDHDVQIE----------DVEEYFTNYIVNDS----LGIIANAHTVFADR 658
+ + + H+ + D E+ T V ++ LG N H
Sbjct: 1006 FE---PEKVPEPHEFGLVSCSEKLKEPFDFNEFLTKVFVFNAAPSLLGHCTNEHEKLCYY 1062
Query: 659 EPRKARSEPCLQLAEKFSIAVDFPKTG--------------VPAEIPPHLYVKEYPDFME 704
E A S +QL+ D KTG V +E+ PH K +
Sbjct: 1063 ENGIA-SPGAIQLSHLLGHLADVRKTGYELRRETWKQLWKQVSSELGPHGLRKPAYKQTQ 1121
Query: 705 KPDKPTYESQNVIGKL-FRAVKD 726
D Y N+I L F V+D
Sbjct: 1122 AEDDGRYNMYNIIDCLKFEVVRD 1144
>gi|119370386|gb|ABL68090.1| putative RNA-directed RNA polymerase 3 [Nicotiana attenuata]
Length = 110
Score = 95.1 bits (235), Expect = 2e-16, Method: Composition-based stats.
Identities = 49/107 (45%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 392 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL 451
LNRQ+++LLS+L + D IF + Q+E + LD +L D A + + S E N +L
Sbjct: 1 LNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVIT-ASCAEAGNTAAIML 59
Query: 452 ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 498
G+KP +EP L ML + RAS+L +LR K RIF+P+GR +MGCLDE
Sbjct: 60 SAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDE 106
>gi|449296300|gb|EMC92320.1| hypothetical protein BAUCODRAFT_569676 [Baudoinia compniacensis
UAMH 10762]
Length = 1367
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 128/512 (25%), Positives = 219/512 (42%), Gaps = 98/512 (19%)
Query: 179 RISFID-EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLR-NGILIGDRKFEFL---- 232
RI +D DLDK+ + +G+ I RIL L+ + +L+G + FL
Sbjct: 380 RILVVDFPDLDKLPKYIIGQKGN---------ITARILEMLKSDHMLLGQKWTAFLNKKR 430
Query: 233 -------AFSSSQLRESSAWMFASR-YGLTAAEIREWMGNFREIRNVA-KYAA----RLG 279
++ S+ + S FA GL + + E G +RN A +YAA RL
Sbjct: 431 KVTSVDPSYDDSKSFQIS--FFAVEGAGLDSINVVEAAGWAVPLRNNAEQYAAKAYSRLD 488
Query: 280 QSFSSSKETLSVHMDEIEIIPDVK-----------------IEIGKTKYVFSDGIGKVSA 322
S + T+ D IE I D+ + + +DG G ++
Sbjct: 489 LPVSRTDATIVFAPDAIEHIADIMSDDVPDASDFNDASLPFLRSDQVPVAMTDGCGYITY 548
Query: 323 EFARKVASKCGLKDNPPSAFQIRYGGYKG--VVAADPT----SSKKLSLRDSMRKYE--- 373
AR+V S L PSAFQ+R G KG VV D T + +++ L + RK +
Sbjct: 549 AAARRVQSILNLT-WLPSAFQVRIAGAKGLLVVRQDITQGDMAQERIGLTQTQRKLQYSD 607
Query: 374 SELT-----KLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 427
S+L LDV+ +SK + + + +L G+ E E V+ +
Sbjct: 608 SDLDDPARRTLDVVDYSKSVRSSHIPPGFLPVLRDRGVPKEAILDVVGEQVKLETSGFLQ 667
Query: 428 PLKAQEALE-------------------LMSPGENTNILKELLI---CGYKPDAEPFLSM 465
LK++ L +++ G N ++ +L ++P P+L
Sbjct: 668 ALKSRSTLHRWVLCQRNVVGFRAAAGGIVLTAGFPANTIERILFLLESWFEPAQCPYLRK 727
Query: 466 MLQTFRASKLLELRTKT-RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESS 524
+ F A + +++ K ++ + + S+M D T+TL G+ ++ S
Sbjct: 728 QVLDF-AGHVFDVKAKAWKLHLGSCTSVMMIPDWTQTLKPGEAYLSFS----------KP 776
Query: 525 LFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHP 583
+ + R + G+ ++VA+NPC+ D++ L+AV+ AL + D +VF +G R
Sbjct: 777 IKDGTSGRVWSSLAGMDILVARNPCIRNSDMQKLRAVSCAALAGIFDVIVFSTQGPRSLA 836
Query: 584 NECSGSDLDGDIYFVCWDDELIPPQQDPPMDY 615
++ SG D DGDI +VCWD L+ P ++ P +
Sbjct: 837 SKLSGGDYDGDIAWVCWDPRLVLPFKNAPAPW 868
>gi|342884280|gb|EGU84517.1| hypothetical protein FOXB_04968 [Fusarium oxysporum Fo5176]
Length = 206
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 94/172 (54%), Gaps = 13/172 (7%)
Query: 265 FREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEF 324
+ +R +A A R+G FSS+ +++ D E IP+V+ Y+F+DG G ++ +
Sbjct: 1 YASLRRIAAKAKRIGLLFSSATTVTTINPDRCEDIPNVET----ADYIFTDGCGLIALKL 56
Query: 325 ARKVA--SKCGLKDN--PPSAFQIRYGGYKGVVAADPTSSKK---LSLRDSMRKYE-SEL 376
A ++A ++ L+DN PS FQIRY GYKGVV DP +K+ L LR SM+K+ E
Sbjct: 57 ANELARRTRILLRDNRYTPSVFQIRYRGYKGVVIVDPRMTKQNPLLKLRKSMKKFNGGED 116
Query: 377 TKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 427
V+ +SK + +LN + I LL L I E KQR+ R L TD
Sbjct: 117 HSFAVVEYSKPFSYGYLNDETIILLHALRISQETLLSKQRDHFRLLSNAKTD 168
>gi|452845289|gb|EME47222.1| hypothetical protein DOTSEDRAFT_69242 [Dothistroma septosporum
NZE10]
Length = 816
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 154/367 (41%), Gaps = 76/367 (20%)
Query: 310 KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV--VAADPTSS------- 360
+ V SDG ++SA ++A GL + PS Q R G KG+ V+AD ++
Sbjct: 134 RIVMSDGCSEISAWAMAQIAQMLGLPE-VPSVIQGRIFGAKGIWYVSADQDTARSTEKPP 192
Query: 361 -KKLSLRDS----------MRKYESELTKLDVL-AWSKYQPCFLNRQLISLLS-----TL 403
K + + +S +R + EL ++V+ A +P L+ + LL L
Sbjct: 193 GKNIKIANSQIKVRYPLHEVRHFGKELLTMNVVKASGPCKPSILHIGFMPLLEDRKVPEL 252
Query: 404 GIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMS------------------PGENTN 445
I I + Q E + L L P++ +E + + P
Sbjct: 253 AIRGFIGPRVQAE-MNDLLTSLETPVQLREWMAQQNEYYEICNRENGITTAGGFPWSKGE 311
Query: 446 ILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYG 505
+ ++L G+ P + +L+ ++ + L R +I +P +++G D L G
Sbjct: 312 QIIQMLESGFFPQEDAYLAELVVEMVGNYLTLKRKNFKIHVPRSTTVIGISDPLGCLQPG 371
Query: 506 QVFVQIS--------GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 557
++ + S GA + LHG + V+ +NP + D++ L
Sbjct: 372 EIHIGFSTPFRDHKAGASWMHLHGMN-----------------VLSTRNPSMAGSDMQKL 414
Query: 558 KAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDY-- 615
+AV P L H+ D VVFP +GMRP + G D DGD +++CW+ L+ P + P +
Sbjct: 415 RAVYKPELAHLRDVVVFPSQGMRPLAGKLQGGDYDGDTFWLCWEPSLVDPFLNAPAPWET 474
Query: 616 ---TPAQ 619
TP Q
Sbjct: 475 DVPTPEQ 481
>gi|302782930|ref|XP_002973238.1| hypothetical protein SELMODRAFT_413790 [Selaginella moellendorffii]
gi|300158991|gb|EFJ25612.1| hypothetical protein SELMODRAFT_413790 [Selaginella moellendorffii]
Length = 878
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 116/467 (24%), Positives = 199/467 (42%), Gaps = 79/467 (16%)
Query: 312 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIR--YGG--YKGVVAADPT-SSKKLSLR 366
+ +DG G +S + A++VA + P+ Q+R Y G KG + T K + R
Sbjct: 274 IHTDGTGFISEDLAKQVA--VNTSEEYPALLQVRLFYHGIAVKGTLLTLKTLQHKTIVYR 331
Query: 367 DSMRKYESE--------LTKLDVLAWSKYQPCF-LNRQLISLLSTLGIWDEIFEKKQREA 417
DSM K +++ L++ S P L+R +I+LL G+ + F + +EA
Sbjct: 332 DSMLKVKADPKLANCPSFNSLEICTTSHKPPVASLSRYVIALLLEGGVPESFFIQVVQEA 391
Query: 418 VRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLE 477
+ + L D A S G+ + + +++ G P + FL L T ++L +
Sbjct: 392 IAKAMTPLQDIAAAHRLCSRFSFGD---MPRRMILAGI-PLTDHFLRNSLMTMIRTQL-K 446
Query: 478 LRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIV 537
K + + +MG D T TL QV + + LH
Sbjct: 447 RYAKANVPLEGSYYLMGSADPTNTLARNQVAILLENG---PLHRHK-------------- 489
Query: 538 QGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD----CVVFPQKGMRPHPNECSGSDLDG 593
V+V K+P +HPGDV V +A L + ++FP KG R +E + SDLDG
Sbjct: 490 ---VLVYKHPGMHPGDVHVFEATWNQELESCLGNSKYVIIFPTKGPRSVVHEIANSDLDG 546
Query: 594 DIYFVCWDDE---LIPPQ---QDPPMDYTPA--QSMQLDHDVQIEDVEEYFTNYIVNDSL 645
D+Y++C +++ L PQ Q+ + T A + + +V + + F I +
Sbjct: 547 DLYWICTNEQVSNLYKPQLPWQEKRTNGTTAVPSCLGMSPEVIMSRLVAMFLRAIFKPNF 606
Query: 646 GIIANA-----------HTVFADREPRKARSEPCLQLAEKFSIAVDFPKTG--------- 685
I A T F + R+ R L+LA+ + +A+D KTG
Sbjct: 607 AISRAATNWLIHMDKYLSTSFDNVREREFRQNCLLELADLYYLALDADKTGEMVTIEDRL 666
Query: 686 VPAEIPPHLYVKEYPDF-----MEKPDKPTYESQNVIGKLFRAVKDI 727
+ +I PH V+E + +++ D Y S ++ GK++ V ++
Sbjct: 667 LCDKIKPHFLVEENSNNPNRRKIQQQDN-VYRSTSIFGKIYNLVTEV 712
>gi|115435092|ref|NP_001042304.1| Os01g0198000 [Oryza sativa Japonica Group]
gi|56201772|dbj|BAD73222.1| RNA-dependent RNA polymerase -like [Oryza sativa Japonica Group]
gi|56201879|dbj|BAD73329.1| RNA-dependent RNA polymerase -like [Oryza sativa Japonica Group]
gi|113531835|dbj|BAF04218.1| Os01g0198000 [Oryza sativa Japonica Group]
gi|215693837|dbj|BAG89036.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 582
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 96/365 (26%), Positives = 150/365 (41%), Gaps = 54/365 (14%)
Query: 390 CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKE 449
F + LI+LL G+ +E F + + A+ + D D A + E++ +
Sbjct: 96 TFTSNNLIALLHYGGVPEEFFMELLQTAIEEADNARFDYAGALNIAFNYADMEDS--MPA 153
Query: 450 LLICGYKPDAEPFLSMMLQTFRASKLLELR--TKTRIFIPNGRSMMGCLDETRTLNYGQV 507
+I P E +L L LLE + +I I + +MG D T L +V
Sbjct: 154 RMILSGIPLEESYLQSRLDFL---SLLERKGIKNGKIPIDDCYYLMGTADPTGKLGPNEV 210
Query: 508 FVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH 567
V + Y Q+ G+ V+V K P LHPGD+ VLKA +
Sbjct: 211 CVILD---YGQVSGD------------------VLVYKYPGLHPGDIHVLKATYSSDIEK 249
Query: 568 MVD----CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQL 623
+V ++FP G R +E + SD DGDIY+V + +L+ P + PA +
Sbjct: 250 VVGNSKHAILFPTTGQRSLADEMANSDFDGDIYWVSLNPKLLE-HFKPSKPWVPAITPNG 308
Query: 624 DHDVQIEDVEE-------------------YFTNYIVNDSLGIIANAHTVFADREPRKAR 664
ED E Y + L + TV D +K
Sbjct: 309 TKQKGPEDFNESELERVLFHEFLKTRFAPSYARATAATNWLVYMDRLLTVSLDESEKKLI 368
Query: 665 SEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAV 724
+ L+L + + +A+D PK G IP L VK+YP FM++ P+Y S +++GK++
Sbjct: 369 EKKMLKLVDLYYLALDAPKMGNKVNIPRDLMVKQYPHFMDR--SPSYHSSSILGKIYDKA 426
Query: 725 KDIAP 729
D P
Sbjct: 427 GDPKP 431
>gi|83773600|dbj|BAE63727.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1260
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 122/477 (25%), Positives = 191/477 (40%), Gaps = 77/477 (16%)
Query: 270 NVAKYAARLGQ--SFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARK 327
N+ + +L Q S SK +V + +I+P +E + V +DG +S A +
Sbjct: 543 NIKQANCKLFQRISLGLSKTFATVALKPSQILP---LEEPEGTPVMNDGCALMSRGLASR 599
Query: 328 VASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK-------KLSLRDSMRK--------- 371
+ G+ PSAFQ R G KG+ D +S + + DS K
Sbjct: 600 ICDSLGITGATPSAFQGRIAGAKGLWMVDKHNSTISTESDVWIQISDSQLKIKPHPAGWQ 659
Query: 372 --YESELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 428
+ E +V+ WSK LN QL+++L G E R +R A+ D
Sbjct: 660 EPVDEEKLTFEVVKWSKPLHTVDLNTQLLAILEHGGQIKEYVAGLTRAGIR---AVCEDF 716
Query: 429 LKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFR------------ASKLL 476
++ ++ +L LI KP AE + ML R +L
Sbjct: 717 ATVVQS--------DSPVLCRSLIQKMKPSAESSSAAMLHKVRRMEEWMADDAEAVVRLT 768
Query: 477 ELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQIS--------GAGYRQLHGESSLFS- 527
E R F P + + CL Q+ +++ YR L + F
Sbjct: 769 EAGFAPRTFRPLRKRLRKCLIGLLDQYVEQLHIEVPLSTYAFCIADPYRVLKEDEVHFGF 828
Query: 528 SSRSR------QRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 580
SS R + ++ G+ V+VA+ P P D++ +AV P L H D +VFP G
Sbjct: 829 SSNWRDPEGQFEDNLLDGMDVLVARLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTVGTT 888
Query: 581 PHPNECSGSDLDGDIYFVCWDDELIPPQQD---PPMDYTPAQSMQL-DHDVQIEDVEEY- 635
P + SG D DGD +VCWD ++ ++ M+Y PA+ L +H+V ++D++ +
Sbjct: 889 PLAHMLSGGDYDGDTTWVCWDQNIVQKFRNSDLSTMEY-PAEHFGLEEHNVPMKDIDSWD 947
Query: 636 ------FTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGV 686
FT + +LG H + E S +LA S VD K GV
Sbjct: 948 EFLQSTFTFNLTMSNLGRCTVEHEKISYDE--SIDSPNAKELACLLSHLVDGRKGGV 1002
>gi|317151716|ref|XP_001824860.2| RNA-directed RNA polymerase [Aspergillus oryzae RIB40]
Length = 1291
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 122/477 (25%), Positives = 191/477 (40%), Gaps = 77/477 (16%)
Query: 270 NVAKYAARLGQ--SFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARK 327
N+ + +L Q S SK +V + +I+P +E + V +DG +S A +
Sbjct: 574 NIKQANCKLFQRISLGLSKTFATVALKPSQILP---LEEPEGTPVMNDGCALMSRGLASR 630
Query: 328 VASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK-------KLSLRDSMRK--------- 371
+ G+ PSAFQ R G KG+ D +S + + DS K
Sbjct: 631 ICDSLGITGATPSAFQGRIAGAKGLWMVDKHNSTISTESDVWIQISDSQLKIKPHPAGWQ 690
Query: 372 --YESELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 428
+ E +V+ WSK LN QL+++L G E R +R A+ D
Sbjct: 691 EPVDEEKLTFEVVKWSKPLHTVDLNTQLLAILEHGGQIKEYVAGLTRAGIR---AVCEDF 747
Query: 429 LKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFR------------ASKLL 476
++ ++ +L LI KP AE + ML R +L
Sbjct: 748 ATVVQS--------DSPVLCRSLIQKMKPSAESSSAAMLHKVRRMEEWMADDAEAVVRLT 799
Query: 477 ELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQIS--------GAGYRQLHGESSLFS- 527
E R F P + + CL Q+ +++ YR L + F
Sbjct: 800 EAGFAPRTFRPLRKRLRKCLIGLLDQYVEQLHIEVPLSTYAFCIADPYRVLKEDEVHFGF 859
Query: 528 SSRSR------QRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 580
SS R + ++ G+ V+VA+ P P D++ +AV P L H D +VFP G
Sbjct: 860 SSNWRDPEGQFEDNLLDGMDVLVARLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTVGTT 919
Query: 581 PHPNECSGSDLDGDIYFVCWDDELIPPQQD---PPMDYTPAQSMQL-DHDVQIEDVEEY- 635
P + SG D DGD +VCWD ++ ++ M+Y PA+ L +H+V ++D++ +
Sbjct: 920 PLAHMLSGGDYDGDTTWVCWDQNIVQKFRNSDLSTMEY-PAEHFGLEEHNVPMKDIDSWD 978
Query: 636 ------FTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGV 686
FT + +LG H + E S +LA S VD K GV
Sbjct: 979 EFLQSTFTFNLTMSNLGRCTVEHEKISYDE--SIDSPNAKELACLLSHLVDGRKGGV 1033
>gi|3687225|gb|AAC62123.1| hypothetical protein [Arabidopsis thaliana]
Length = 929
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 149/623 (23%), Positives = 239/623 (38%), Gaps = 151/623 (24%)
Query: 175 DNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAF 234
DN L + F D + SS I Y I +NGI+IG R+++F F
Sbjct: 212 DNVLTVKFADVQ-----------KSSSTYSIDHYFTYKGIA---KNGIMIGLRRYQFFVF 257
Query: 235 ------------SSSQLR------ESSAWM-FASRYGLTAAEIREWMGNFREIR---NVA 272
S+ +++ +S+A+ + Y LT I E +F + +A
Sbjct: 258 KDGGKEEKKKDLSTKKVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLA 317
Query: 273 KYAARLGQSFSSSKETLSVHMDEIEI--IPDVK---------IEIGKTKYVFSDGIGKVS 321
Y AR S +K TL V M I I D+ ++ K + SDG G +S
Sbjct: 318 NYMARFSLILSKTK-TLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYIS 376
Query: 322 AEFARKV-----ASKCGLKDN-PPSAFQIR--YGGY--KGVVAADPT-SSKKLSLRDSMR 370
+ AR KC ++ P Q R Y GY KG + + + +R SM
Sbjct: 377 EDLARMCPLNIFKGKCLRSESIQPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMI 436
Query: 371 KYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 430
K + P N + L + +IF A+ +
Sbjct: 437 KVSKD-------------PSLSNFSTFNALEVVTTRSQIFGAA---------ALNYGEMD 474
Query: 431 AQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQT----FRASKLLELRTKTRIFI 486
Q A +++ G I +P + +LS++L+T +A KL +
Sbjct: 475 DQNAAQMILVG----------IPLDEPHLKNYLSILLKTEKNDLKAGKLP---------V 515
Query: 487 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 546
+MG +D T L +V V + Q+ GE V+V +N
Sbjct: 516 TESYYLMGTVDPTGALKEDEVCVILESG---QISGE------------------VLVYRN 554
Query: 547 PCLHPGDVRVLKAVNVPALHHMVD----CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDD 602
P LH GD+ +LKA V AL V V FPQKG R +E +G D DGD+YF+ +
Sbjct: 555 PGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNP 614
Query: 603 ELIP--PQQDPPMDYTP---------AQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANA 651
EL+ +P + TP + + + + ++ +GI A++
Sbjct: 615 ELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADS 674
Query: 652 HTVFADR---------EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDF 702
DR E + + L+L + + A+D PK G +P L +P +
Sbjct: 675 WLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHY 734
Query: 703 MEKPDKPTYESQNVIGKLFRAVK 725
ME+ K ++S +++G +F VK
Sbjct: 735 MERDKK--FQSTSILGLIFDFVK 755
>gi|342881586|gb|EGU82475.1| hypothetical protein FOXB_07061 [Fusarium oxysporum Fo5176]
Length = 1387
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 140/334 (41%), Gaps = 51/334 (15%)
Query: 308 KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRD 367
K + DGIG+VS AR++A+ GL + P AFQ R G KG+ D L D
Sbjct: 705 KEQKDMGDGIGRVSRNLARRIATHMGLLET-PCAFQARIGSAKGMWIVD-VEDDGLDNDD 762
Query: 368 ------SMRKYESELTKL-----DVLAWSK-YQPCFLNRQLISLLSTLG---------IW 406
S RK+ + + +V WS+ + LN Q I +L I
Sbjct: 763 WIETYPSQRKWNCDFEDVHHRTFEVREWSRELRSAALNTQFIPVLEAQAPVPQDMRNVIS 822
Query: 407 DEIFEKKQREAVRQLDAILTDPLK----AQEALELMS----------PGENTNILKELLI 452
+ Q E QL A +T P + + P +I+ +L
Sbjct: 823 RHLTNGLQEEIGGQL-AAMTHPTNLRGFTHRGFDRATLGNVPFVGALPEREEDIISYMLD 881
Query: 453 CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQIS 512
G+ FL M+ + + +L+ K I IP +D T TL G+ VQ++
Sbjct: 882 AGFDATKCRFLRDMVWNNQKRQADQLKAKMNIKIPRSTYAFMTVDFTGTLEEGE--VQLA 939
Query: 513 GAGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDC 571
+ Q GES ++ G+ ++VA+ P D++ +KAV P L + D
Sbjct: 940 FSSKFQADGESDT----------LLDGIDILVARAPAHFVSDIQKVKAVFRPNLKRLKDV 989
Query: 572 VVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
+VF KG P + SG D DGD+ ++CWD +++
Sbjct: 990 IVFSSKGKSPLADMLSGGDYDGDLAWICWDPDVV 1023
>gi|391867215|gb|EIT76465.1| hypothetical protein Ao3042_07438 [Aspergillus oryzae 3.042]
Length = 1260
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 120/477 (25%), Positives = 193/477 (40%), Gaps = 77/477 (16%)
Query: 270 NVAKYAARLGQ--SFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARK 327
N+ + +L Q S SK +V + +I+P +E + V +DG +S A +
Sbjct: 543 NIKQANCKLFQRISLGLSKTFATVALKPSQILP---LEEPEGTPVMNDGCALMSRGLASR 599
Query: 328 VASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK-------KLSLRDSMRK--------- 371
+ G+ PSAFQ R G KG+ D +S + + DS K
Sbjct: 600 ICDSLGITGATPSAFQGRIAGAKGLWMVDKHNSTISTESDVWIQISDSQLKIKPHPAGWQ 659
Query: 372 --YESELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 428
+ E +V+ WSK LN QL+++L G E R +R A+ D
Sbjct: 660 EPVDEEKLTFEVVKWSKPLHTVDLNTQLLAILEHGGQIKEYVAGLTRAGIR---AVCEDF 716
Query: 429 LKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFR------------ASKLL 476
++ ++ +L LI KP AE + ML R +L
Sbjct: 717 ATVVQS--------DSPVLCRSLIQKMKPSAESSSAAMLHKVRRMEEWMADDAEAVVRLT 768
Query: 477 ELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR-------------QLH-GE 522
E R F P + + CL Q+ +++ + Y ++H G
Sbjct: 769 EAGFAPRTFRPLRKRLRKCLIGLLDQYVEQLHIEVPLSTYAFCIADPYGVLKEDEVHFGF 828
Query: 523 SSLFSSSRSR-QRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 580
SS + + + ++ G+ V+VA+ P P D++ +AV P L H D +VFP G
Sbjct: 829 SSNWRDPEGQFEDNLLDGMDVLVARLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTVGTT 888
Query: 581 PHPNECSGSDLDGDIYFVCWDDELIPPQQD---PPMDYTPAQSMQL-DHDVQIEDVEEY- 635
P + SG D DGD +VCWD ++ ++ M+Y PA+ L +H+V ++D++ +
Sbjct: 889 PLAHMLSGGDYDGDTTWVCWDQNIVQKFRNSDLSTMEY-PAEHFGLEEHNVPMKDIDSWD 947
Query: 636 ------FTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGV 686
FT + +LG H + E S +LA S VD K GV
Sbjct: 948 EFLQSTFTFNLTMSNLGRCTVEHEKISYDE--SIDSPNAKELACLLSHLVDGRKGGV 1002
>gi|189208947|ref|XP_001940806.1| RNA-directed RNA polymerase 2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976899|gb|EDU43525.1| RNA-directed RNA polymerase 2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 1436
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 100/435 (22%), Positives = 181/435 (41%), Gaps = 86/435 (19%)
Query: 447 LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQ 506
+K LL G+ P L+ LQ F +K + +K R+ + + G +D L GQ
Sbjct: 932 VKLLLESGFSPAKFQPLAQSLQRFIQAKQILQESKLRVPLAKSTFLFGIVDPFEVLEPGQ 991
Query: 507 VFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL----VVVAKNPCLHPGDVRVLKAVNV 562
+ VQ S S F+ + ++++ GL V+VA+ P D++ ++ V
Sbjct: 992 IQVQFS-----------SSFADDTTDEKYL--GLRDMEVLVARQPACRRSDIQKVRTVIR 1038
Query: 563 PALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI--------PPQQDPPMD 614
P L H+VD VVFP +G P + G D DGDI+++CW+ +L+ P Q P
Sbjct: 1039 PELSHLVDVVVFPSRGRYPLAGKLQGGDYDGDIFWICWEPQLVLPFLNAPAPVQSPDPAR 1098
Query: 615 YTPAQSMQLDHDV----QIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQ 670
Y ++ DV DV+ I S + TVFA+++ A E C+
Sbjct: 1099 YEIKKTTAKVRDVIDTRNPGDVDRLLEMAIEARSKSSMLGMVTVFAEKQ---AYRENCIH 1155
Query: 671 ------LAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDF--------MEKPDKPTYESQNV 716
L + + VD PK G Y DF +++P +P Y+
Sbjct: 1156 SATLEALYDMHDLLVDAPKQG---------YFLSQADFDLCKQKLGLKEPKQPAYKC--- 1203
Query: 717 IGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNL 776
A++D A + ++ +E +R+Y P + + + D +Y + + + +
Sbjct: 1204 ------AMEDCANAKNSTKV--EECRKRNYSPKL------NRVIDYLYFETVRKHNVETM 1249
Query: 777 MDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDA 836
++A L +++ K + +A++KE R+++++ D
Sbjct: 1250 RLVNEFFSKATPLDDTLLYPQKHLNDKNS--------KAIKKELRSYYEKL------DSL 1295
Query: 837 YAKASAWYHVTYHPD 851
Y ++ +H Y P+
Sbjct: 1296 YRDWNSGWHKDYDPE 1310
>gi|440633788|gb|ELR03707.1| hypothetical protein GMDG_06341 [Geomyces destructans 20631-21]
Length = 1330
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 160/384 (41%), Gaps = 60/384 (15%)
Query: 273 KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE-IGKTKYVFSDGIGKVSAEFARKVASK 331
K +R+ S + T+ + EI V+ + K+ V +DG G++S + A +A K
Sbjct: 626 KLFSRISLGLSKTYATIPLRATEITF---VRYDYCSKSGEVMNDGCGQISRKLAHHIAQK 682
Query: 332 CGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTK------------- 378
L D PSAFQ R GG KG+ D K + +++ Y S++
Sbjct: 683 LKL-DYTPSAFQARIGGAKGMWIVD---VKDFGDKTNIKIYPSQVKWDNNSFFVDPSHRI 738
Query: 379 LDVLAWSK-YQPCFLNRQLISLLSTLG---------IWDEIFEK-------KQREA---- 417
+V+ WS+ + LN Q + +L G + E +QREA
Sbjct: 739 FEVICWSRPVRSATLNLQFLPILEDRGRNNGKGMRDALSRVLENGLTYEISRQREAMDSP 798
Query: 418 ------VRQLDAILTDPLK-AQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTF 470
VR+ +TD K Q E P + LL G+ P FL +
Sbjct: 799 QAFRKWVRETAPRITDRNKLGQVGYEAGLPKSQGEKMNLLLDAGFNPKELCFLRDLAWKA 858
Query: 471 RASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSR 530
++ L+ K I + M+ +D L +V V S A ES+ F +
Sbjct: 859 NVARGEILKKKLNISVGRSAYMLMVVDFAGILGPREVHVGFSTA----FKDESTDFCDT- 913
Query: 531 SRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGS 589
I+ + ++VA++P + D++ ++AV P L + D +VF +G P E SG
Sbjct: 914 -----ILSNMDILVARSPAHYTSDIQKVRAVFKPELSALKDVIVFSTRGDFPLAGELSGG 968
Query: 590 DLDGDIYFVCWDDELIPPQQDPPM 613
D DGDI +VCW E++ ++ M
Sbjct: 969 DYDGDIAWVCWQTEIVSEFENAKM 992
>gi|238505018|ref|XP_002383738.1| RNA-directed RNA polymerase, putative [Aspergillus flavus NRRL3357]
gi|220689852|gb|EED46202.1| RNA-directed RNA polymerase, putative [Aspergillus flavus NRRL3357]
Length = 1131
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 110/443 (24%), Positives = 181/443 (40%), Gaps = 75/443 (16%)
Query: 270 NVAKYAARLGQ--SFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARK 327
N+ + +L Q S SK +V + +I+P +E + V +DG +S A +
Sbjct: 414 NIKQANCKLFQRISLGLSKTFATVALKPSQILP---LEEPEGTPVMNDGCALMSRSLASR 470
Query: 328 VASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK-------KLSLRDSMRK--------- 371
+ G+ PSAFQ R G KG+ D +S + + DS K
Sbjct: 471 ICDSLGITGATPSAFQGRIAGAKGLWMVDKHNSTISTESDVWIQISDSQLKIKPHPAGWQ 530
Query: 372 --YESELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 428
+ E +V+ WSK LN QL+++L G E R +R A+ D
Sbjct: 531 EPVDEEKLTFEVVKWSKPLHTVDLNTQLLAILEHGGHIKEYVAGLTRAGIR---AVYEDF 587
Query: 429 LKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFR------------ASKLL 476
++ ++ +L LI KP AE + ML R +L
Sbjct: 588 ATVVQS--------DSPVLCRSLIQKMKPSAESSSAAMLHKVRRMEEWMADDVEAVVRLT 639
Query: 477 ELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR-------------QLH-GE 522
E R F P + + CL Q+ +++ + Y ++H G
Sbjct: 640 EAGFAPRTFRPLRKRLRKCLIGLLDQYVEQLHIEVPLSTYAFCIADPYGVLKEDEVHFGF 699
Query: 523 SSLFSSSRSR-QRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 580
SS + + + ++ G+ V+VA+ P P D++ +AV P L H D +VFP G
Sbjct: 700 SSNWRDPEGQFEDNLLDGMDVLVARLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTVGTT 759
Query: 581 PHPNECSGSDLDGDIYFVCWDDELIPPQQD---PPMDYTPAQSMQL-DHDVQIEDVEEY- 635
P + SG D DGD +VCWD ++ ++ M+Y PA+ L +H+V ++D++ +
Sbjct: 760 PLAHMLSGGDYDGDTTWVCWDQNIVQKFRNSDLSTMEY-PAEHFGLEEHNVPMKDIDSWD 818
Query: 636 ------FTNYIVNDSLGIIANAH 652
FT + +LG H
Sbjct: 819 EFLQSTFTFNLTMSNLGRCTVEH 841
>gi|375281950|gb|AFA45121.1| RNA-directed RNA polymerase 2 [Plenodomus tracheiphilus]
Length = 1382
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 110/434 (25%), Positives = 172/434 (39%), Gaps = 74/434 (17%)
Query: 312 VFSDGIGKVSAEFARKV----ASKCGLKDNPPSAFQIRYGGYKGV--VAADPTSSKK--- 362
V +DG ++S A K+ S G + PSAFQ R G KG+ V+A+ + +
Sbjct: 701 VMNDGCARISVGAALKIWEAYRSATGSDEPFPSAFQGRIRGAKGMWMVSAEAHTRNEEHK 760
Query: 363 ---LSLRDSMRKYESELTKLDVLAWSKYQPCF-------------LNRQLISLLSTLGI- 405
+ + DS K+E L D ++ ++ F L+ I +L G+
Sbjct: 761 DIWIEIADSQSKFEPALEDEDDNTYNSHRLTFNYVQHSFVNGSTDLHISFIPILVDRGVE 820
Query: 406 ---WDEIFEKKQREAVRQLDAILTDPLKAQE---------------ALELMSPGENTNIL 447
+ EK +QL LT+P+K A E P +
Sbjct: 821 RHNIADFMEKHLDIERKQLLETLTEPVKLHNWVTKQGSAIPANGIIAREAALPKCIPEKV 880
Query: 448 KELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQV 507
K LL G+ P PFL+ L + + K R + + ++G D L G+V
Sbjct: 881 KYLLRAGFTPQDSPFLARGLMQLIRQRQSVMEQKLRAPLGSATFLLGLADPENVLRPGEV 940
Query: 508 FVQISGAGYRQLHGESSLFSSSRSRQRFI-VQGL-VVVAKNPCLHPGDVRVLKAVNVPAL 565
+ S S F +RQ + + GL V++A+ P D++ ++ V P L
Sbjct: 941 HINFS-----------SPFVDEFNRQTYRHLDGLEVLIARQPACRQSDIQKVRVVAHPQL 989
Query: 566 HHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTP----AQSM 621
H+ D VVF +G P + G D DGD +++CW+ L+ P ++ P P A +
Sbjct: 990 AHLRDVVVFATRGQYPLAGKLQGGDYDGDTFWICWESILVEPFKNAPAPMNPPDPAAYGI 1049
Query: 622 QLDH----DVQIED--------VEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCL 669
+ DH +V D + E FT + LG N A RE K S
Sbjct: 1050 KKDHRRVNEVMDPDDPSSIDGFLREAFTFRLAPSLLGKATNFLEKVAYRE-NKIVSPSIN 1108
Query: 670 QLAEKFSIAVDFPK 683
L + + VD PK
Sbjct: 1109 ALCDVHDLLVDAPK 1122
>gi|402577566|gb|EJW71522.1| hypothetical protein WUBG_17571 [Wuchereria bancrofti]
Length = 89
Score = 90.5 bits (223), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/97 (45%), Positives = 61/97 (62%), Gaps = 8/97 (8%)
Query: 492 MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 551
M G LDET L YGQVFVQ + + L + ++ + IV+G V++ KNP +
Sbjct: 1 MFGILDETGLLQYGQVFVQFTNDVF--------LKTPPKAAAKTIVKGFVLITKNPSIVA 52
Query: 552 GDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSG 588
GDVR+ +AV++P L H+VD VVFPQ G RPH +E +G
Sbjct: 53 GDVRIFEAVDLPELRHLVDVVVFPQHGPRPHTDEMAG 89
>gi|116208690|ref|XP_001230154.1| hypothetical protein CHGG_03638 [Chaetomium globosum CBS 148.51]
gi|88184235|gb|EAQ91703.1| hypothetical protein CHGG_03638 [Chaetomium globosum CBS 148.51]
Length = 1372
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 156/366 (42%), Gaps = 65/366 (17%)
Query: 285 SKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQI 344
SK +V + +I+ + + T V +DGIG++S ARKV GL D P SA Q
Sbjct: 641 SKTFPAVKFEPEQILHRPEDILSPTGKVMNDGIGRMSRGVARKVRDALGLSDIP-SAIQG 699
Query: 345 RYGGYKGVVAADPTSSKK---LSLRDSMRKYESELT-----KLDVLA-WSKYQPCFLNRQ 395
R G KG+ D +S + S RK+ + T L+V + S+ +P LN Q
Sbjct: 700 RMGSAKGMWLMDVGNSGDTDWIETYPSQRKWNCDDTDPYHRTLEVRSVASELKPAGLNLQ 759
Query: 396 LISLLSTLGIWDEIFEKKQREAVRQLDAI---LTDPLKAQ---EALELMSP-------GE 442
+ +L E + R+ R AI LT+ L+ Q + L P E
Sbjct: 760 FLPVL----------EDRARDKRRMKHAIGNRLTNNLELQFENQKTALKRPSQFRQWVNE 809
Query: 443 NTN-----------------------ILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 479
N+N IL LL G+ P ++ +L + + K LR
Sbjct: 810 NSNDRGSRVKHGQVPFLGGLPESKSEILHFLLNSGFDPKSQKYLQDLAFELQKQKCDILR 869
Query: 480 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 539
TK I + + +D L +V V S + ES S + +
Sbjct: 870 TKLNIRVGRSAYIYMVIDFWGVLEENEVHVGFSS----KFRDESDDISYT-----LLADC 920
Query: 540 LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVC 599
V+VA++P DV+ ++AV P LH + D +VF KG P ++ SG D DGD+ +VC
Sbjct: 921 DVLVARSPAHFVSDVQKVRAVFKPELHALKDVIVFSAKGNIPLADKLSGGDYDGDMAWVC 980
Query: 600 WDDELI 605
WD +++
Sbjct: 981 WDPDIV 986
>gi|451994085|gb|EMD86556.1| hypothetical protein COCHEDRAFT_1034368 [Cochliobolus
heterostrophus C5]
Length = 158
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 82/153 (53%), Gaps = 10/153 (6%)
Query: 635 YFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHL 694
+F NYI ND+LG IA+AH AD CL+LAE S AVDFPK+G+PAE+ L
Sbjct: 4 FFVNYIKNDALGPIAHAHLAQADFNENGVGDPICLELAELHSRAVDFPKSGIPAEMKREL 63
Query: 695 YVKEYPDFMEK---PDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDME 751
K++P FMEK Y+S+ ++G L+ VK I F K + ++D D E
Sbjct: 64 RPKKWPHFMEKKYLSQHQIYKSKKILGLLYDEVKLIDFEPQWENQFDKRIL-EAFDLDQE 122
Query: 752 VDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKT 784
+ +D A K +YD L LM +GI+T
Sbjct: 123 L------LDKAASLKLSYDEALRPLMAKHGIRT 149
>gi|356497593|ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine
max]
Length = 953
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 109/429 (25%), Positives = 185/429 (43%), Gaps = 71/429 (16%)
Query: 338 PPSAFQIRYGGYKGVVAADPTSSKKL-----SLRDSMRKYESE-------LTKLDVLAWS 385
PP Q R + ++KL +R SM K E + + L+V+ S
Sbjct: 410 PPLLIQCRLFHMGHAIKGTLLVNRKLPPRTIQVRPSMIKVEKDPSVHMQSINSLEVVTTS 469
Query: 386 -KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENT 444
K + +L++ LI+LLS G+ +E F R + + + ++ A A +
Sbjct: 470 NKPKRGYLSKHLIALLSFGGVPNEFFMDLLRSNMEDANHVYSNKRSALRASINCGEKDEY 529
Query: 445 NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNY 504
N E+++CG P EPFL L F + +LR ++++P+ +MG +D T L
Sbjct: 530 NA-AEMILCGI-PLDEPFLKHHLSRFAREEKKKLRG-GKLYMPDCFYLMGTVDPTGHLKK 586
Query: 505 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 564
QV + +H S + G V+V +NP LH GD+ + A V
Sbjct: 587 NQVCI---------IHENSQIV------------GDVLVYRNPGLHFGDIHKMDATYVKE 625
Query: 565 LHHMVD----CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIP--PQQDPPMDYTPA 618
L V + FP+ G R +E +G D DGD Y+V +L+ + DP ++
Sbjct: 626 LESYVGHSKYGIFFPRVGTRSVADEIAGGDFDGDTYWVSNHPQLLQYFRKGDPWIE---- 681
Query: 619 QSMQLDHDVQIEDVEEYF------------TNYIVNDSLGIIANAHTVFADR-------- 658
S+ LD V+ T + + ++G+ N+ DR
Sbjct: 682 NSVPLDSSVKKPSEFSPEELEEELFRLFLKTRFQPSYAMGMSENSWMALMDRLLTLNNCT 741
Query: 659 -EPRKAR-SEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNV 716
E K R E L+L + + A+D PK+G ++P L + +P +MEK DK ++ S ++
Sbjct: 742 NENEKERVKENMLKLIDIYYEALDAPKSGRKVQVPNDLIAELFPHYMEK-DK-SFTSTSI 799
Query: 717 IGKLFRAVK 725
+G ++ V+
Sbjct: 800 LGLIYDEVE 808
>gi|122920829|pdb|2J7N|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
gi|122920830|pdb|2J7N|B Chain B, Structure Of The Rnai Polymerase From Neurospora Crassa
gi|122920831|pdb|2J7O|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
Length = 1022
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 98/383 (25%), Positives = 153/383 (39%), Gaps = 55/383 (14%)
Query: 309 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKG--VVAADPTSSKK-LSL 365
T V +DG+G++S A+++ GL D P SA Q R+G KG V+ D T + +
Sbjct: 323 TGEVMNDGVGRMSRSVAKRIRDVLGLGDVP-SAVQGRFGSAKGMWVIDVDDTGDEDWIET 381
Query: 366 RDSMRKYESELT-----KLDVLA-WSKYQPCFLNRQLISLLST---------LGIWDEIF 410
S RK+E + L+V + S+ + LN QL+ +L I D +
Sbjct: 382 YPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLLPVLEDRARDKVKMRQAIGDRLI 441
Query: 411 EKKQREAVRQLDAILTDPLK-AQEALELMS-----------------PGENTNILKELLI 452
QR+ Q A L P++ Q E S P L L+
Sbjct: 442 NDLQRQFSEQKHA-LNRPVEFRQWVYESYSSRATRVSHGRVPFLAGLPDSQEETLNFLMN 500
Query: 453 CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQIS 512
G+ P + +L + + K L++K I + + D L +V V
Sbjct: 501 SGFDPKKQKYLQDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHV--- 557
Query: 513 GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCV 572
G SS F + V+VA++P P D++ ++AV P LH + D +
Sbjct: 558 --------GFSSKFRDEEESFTLLSDCDVLVARSPAHFPSDIQRVRAVFKPELHSLKDVI 609
Query: 573 VFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDV 632
+F KG P + SG D DGD+ +VCWD E++ + M P S L D
Sbjct: 610 IFSTKGDVPLAKKLSGGDYDGDMAWVCWDPEIVDGFVNAEMPLEPDLSRYLKKD------ 663
Query: 633 EEYFTNYIVNDSLGIIANAHTVF 655
+ F + + G A T +
Sbjct: 664 KTTFKQLMASHGTGSAAKEQTTY 686
>gi|85091735|ref|XP_959047.1| hypothetical protein NCU07534 [Neurospora crassa OR74A]
gi|4803727|emb|CAB42634.1| RNA-dependent RNA polymerase [Neurospora crassa]
gi|28920444|gb|EAA29811.1| predicted protein [Neurospora crassa OR74A]
Length = 1402
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 98/383 (25%), Positives = 153/383 (39%), Gaps = 55/383 (14%)
Query: 309 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKG--VVAADPTSSKK-LSL 365
T V +DG+G++S A+++ GL D P SA Q R+G KG V+ D T + +
Sbjct: 703 TGEVMNDGVGRMSRSVAKRIRDVLGLGDVP-SAVQGRFGSAKGMWVIDVDDTGDEDWIET 761
Query: 366 RDSMRKYESELT-----KLDVLA-WSKYQPCFLNRQLISLLST---------LGIWDEIF 410
S RK+E + L+V + S+ + LN QL+ +L I D +
Sbjct: 762 YPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLLPVLEDRARDKVKMRQAIGDRLI 821
Query: 411 EKKQREAVRQLDAILTDPLK-AQEALELMS-----------------PGENTNILKELLI 452
QR+ Q A L P++ Q E S P L L+
Sbjct: 822 NDLQRQFSEQKHA-LNRPVEFRQWVYESYSSRATRVSHGRVPFLAGLPDSQEETLNFLMN 880
Query: 453 CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQIS 512
G+ P + +L + + K L++K I + + D L +V V
Sbjct: 881 SGFDPKKQKYLQDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHV--- 937
Query: 513 GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCV 572
G SS F + V+VA++P P D++ ++AV P LH + D +
Sbjct: 938 --------GFSSKFRDEEESFTLLSDCDVLVARSPAHFPSDIQRVRAVFKPELHSLKDVI 989
Query: 573 VFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDV 632
+F KG P + SG D DGD+ +VCWD E++ + M P S L D
Sbjct: 990 IFSTKGDVPLAKKLSGGDYDGDMAWVCWDPEIVDGFVNAEMPLEPDLSRYLKKD------ 1043
Query: 633 EEYFTNYIVNDSLGIIANAHTVF 655
+ F + + G A T +
Sbjct: 1044 KTTFKQLMASHGTGSAAKEQTTY 1066
>gi|345562071|gb|EGX45143.1| hypothetical protein AOL_s00173g244 [Arthrobotrys oligospora ATCC
24927]
Length = 1092
Score = 89.4 bits (220), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 92/369 (24%), Positives = 162/369 (43%), Gaps = 47/369 (12%)
Query: 270 NVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVA 329
+ AKY AR+ FS T+ V ++ ++I + + + K+ +DG G + + +A
Sbjct: 368 STAKYNARIKLGFS---RTVLVPLENVQIKEEKDL-VSTIKFPMTDGCGTATFAVLKAIA 423
Query: 330 SKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELT-----KLDVLAW 384
K GL D PS FQIR+GG KG++ D +S SLR + RK + + ++V+ +
Sbjct: 424 EKMGL-DYVPSYFQIRHGGRKGLILLDVENSDSESLRITYRKTQIKFETRQDLNIEVVDY 482
Query: 385 SK-YQPCFLNRQLISLLSTLGIWDEIF-----EKKQREAVRQLDAILTDPLKAQEALELM 438
++ + + Q +++L G+ E E+ +++ + +L DP + +
Sbjct: 483 ARPLKRGKITSQFLTILHNGGVSKETLGNLAKEEIEKDGIWELLERAGDPSFVKNFYQSG 542
Query: 439 SPGENTNILKELLICGYKPDA--EPFLSMMLQTFRASKLLELR------TKTRI------ 484
+ + + G P + E + M+ F S+ L L+ K R+
Sbjct: 543 ALKKRRDKDGCFKYAGSMPASAEERIIQMVDAGFAVSECLVLKNLISGCNKNRLDSWNDL 602
Query: 485 --FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVV 542
I S+ D + L G+VF+Q S G+ +F+ + + G V+
Sbjct: 603 KFTISESTSVKCAPDFKKVLREGEVFLQFSSDGF--------VFNDKLLK---FLSGKVL 651
Query: 543 VAKNPCLHPGDVRVLKAVNVP----ALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 598
V ++P D++ AV P A +VDC+VFP G + SG D DGD V
Sbjct: 652 VGRSPAYIASDIQSAIAVMNPEVLEAYGDLVDCIVFPIVGEYSLASRLSGGDYDGDSVLV 711
Query: 599 CWDDELIPP 607
WD ++ P
Sbjct: 712 IWDQRVVEP 720
>gi|396489578|ref|XP_003843139.1| similar to RNA-directed RNA polymerase 2 [Leptosphaeria maculans JN3]
gi|312219717|emb|CBX99660.1| similar to RNA-directed RNA polymerase 2 [Leptosphaeria maculans JN3]
Length = 1435
Score = 89.4 bits (220), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 97/411 (23%), Positives = 167/411 (40%), Gaps = 81/411 (19%)
Query: 257 EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI------------ 304
+I +W +N+ K +R+ S + TL +I ++ D++
Sbjct: 686 DINQW-------QNLYKAYSRIALGLSRTIPTLVFKPSQIRLVKDIRSDGTPEANEFNDE 738
Query: 305 -----EIGKTKYVFSDGIGKVSAEFAR---KVASKCGLKDNP-PSAFQIRYGGYKGV--V 353
E V +DG ++S AR ++ + D P PSAFQ R G KG+ V
Sbjct: 739 GLDWDEKCSQPQVMNDGCARISVGAARIIWEMYCRATGSDEPLPSAFQGRIRGAKGMWMV 798
Query: 354 AADPTSSKK------LSLRDSMRKYESELTKLDVLAWSKYQPCF-------------LNR 394
+A+ + + + + DS KYE + ++ ++ F L+
Sbjct: 799 SAEAHTRDEEHNDIWIEISDSQSKYEPHEADKNDATFNSHRLTFNYVKHSHVNGSTDLHI 858
Query: 395 QLISLLSTLG-----IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMS---------- 439
I +L G I D I + E + LD +L++P+K + S
Sbjct: 859 SFIPILVDRGVKRDVIADFIIKHLNVERAQLLD-MLSEPVKLHNWVTKQSSATSGVIPWE 917
Query: 440 ---PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL 496
P + +K LL G+ P PFL+ +L + + K R + + ++G
Sbjct: 918 AALPVSQSEKVKLLLRAGFTPQDSPFLAKVLINLIRQRQSVMEQKLRAPLGSATFLLGLA 977
Query: 497 DETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFI-VQGL-VVVAKNPCLHPGDV 554
D L GQV + S F SRQ + + GL V++A+ P D+
Sbjct: 978 DPEGVLEPGQVHISFSLP-----------FVDEFSRQTYRHLDGLEVLIARQPACRRSDI 1026
Query: 555 RVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
+ ++ V L H+ D +VFP +G P + G D DGDI++ CW+++L+
Sbjct: 1027 QKVRVVTYSKLAHLRDVIVFPTRGQYPLAGKLQGGDYDGDIFWTCWENDLV 1077
>gi|242790556|ref|XP_002481575.1| RNA-directed RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
gi|218718163|gb|EED17583.1| RNA-directed RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
Length = 1360
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 119/489 (24%), Positives = 195/489 (39%), Gaps = 73/489 (14%)
Query: 253 LTAAEIREWMGNFREIRNVA--KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK 310
+T ++ +W E R+ K +RL + S + T+ V + +PD K
Sbjct: 614 MTVDQLIQWHTPLNENRSQTDCKLFSRLSLALSKTWATVVVRPHQFLKLPD-----APDK 668
Query: 311 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAAD-----------PTS 359
V +DG +S AR + +K G+ PSAFQ R G KG+ D S
Sbjct: 669 PVMNDGCALMSRSLARDICTKLGIDGVTPSAFQGRIAGAKGLWMVDRDRGEDERFWIQVS 728
Query: 360 SKKLSL----RDSMRKYESELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQ 414
+L + RD + E +V+ WSK + +N QL+ +L+ G + +
Sbjct: 729 DSQLKVKPHPRDFFGHVDKEKITFEVVGWSKPLRSSEINTQLLEVLNNRG------QVRN 782
Query: 415 REAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAE------------PF 462
R A DAI + + + +E +N+ L LI +P+ E +
Sbjct: 783 RVADIARDAIRSIYSEFEIVME-----KNSIPLARALIQKIRPNTEDGHSRTNIRRIDQW 837
Query: 463 LSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGY------ 516
LS +++ + LE R F P + CL +T Q+ + I + Y
Sbjct: 838 LSNNIESI--IRFLEAGFSPRDFHPLRERLRICLRDTLDRYVTQLHIPIPLSTYAYCIAD 895
Query: 517 -------RQLH-GESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHH 567
++H S + +V G+ V+V + P P D++ +AV L H
Sbjct: 896 PYGVLEENEVHFAFSGQWRDCAYFDDAMVDGVDVLVGRTPAHCPWDIQRRRAVWKSELRH 955
Query: 568 MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI-------PPQQDPPMDY--TPA 618
D +VF KG P + SG D DGD +VCWD ++ PP +P ++
Sbjct: 956 FKDVIVFSTKGTTPLASLLSGGDYDGDRTWVCWDSGIVESFTNTTPPAIEPGPEHFGLVK 1015
Query: 619 QSMQLDHDVQIED-VEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSI 677
+ ++ +ED ++ F + +LG H A E S L+LA S
Sbjct: 1016 HARPMETVSSVEDMLQNTFKFNLATTNLGQCTVEHNKLAYDEKEGISSPLSLELATLLSH 1075
Query: 678 AVDFPKTGV 686
VD K+G+
Sbjct: 1076 LVDSTKSGL 1084
>gi|238599737|ref|XP_002394960.1| hypothetical protein MPER_05070 [Moniliophthora perniciosa FA553]
gi|215464849|gb|EEB95890.1| hypothetical protein MPER_05070 [Moniliophthora perniciosa FA553]
Length = 346
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 108/215 (50%), Gaps = 36/215 (16%)
Query: 127 SKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED 186
S S ++L G + V TP+R+ GP S+R++R ++ D+F+R+ F +ED
Sbjct: 139 SAAPSSLLNLPLGQFNCYHVTFTPTRMITEGPYPTQSHRIIRRYKGFEDHFIRVDFCEED 198
Query: 187 LDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM 246
K G + + R+ + L+ G +G R F+FLA+S S LR S W
Sbjct: 199 RTKY--------GDDREVDSIPFLKGRVGNILKRGFPLGGRHFQFLAYSGSGLRSHSVWF 250
Query: 247 FASRY----GL-TAAEIREWMGNFRE--------------------IRNVAKYAARLGQS 281
+ + GL AA+IR+ +G+FR+ +R+ +KY ARLG +
Sbjct: 251 MSEFHHPLEGLVNAAKIRDSIGDFRDLRIEEYPEQERRFYQADQDLLRHPSKYGARLGLA 310
Query: 282 FSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDG 316
F++++ ++ + D+ +I+PD++ G +F+DG
Sbjct: 311 FTATRPSVRIRRDQWDIVPDIE---GDKSRLFTDG 342
>gi|119183445|ref|XP_001242762.1| hypothetical protein CIMG_06658 [Coccidioides immitis RS]
gi|392865671|gb|EAS31478.2| hypothetical protein CIMG_06658 [Coccidioides immitis RS]
Length = 1372
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 142/366 (38%), Gaps = 56/366 (15%)
Query: 287 ETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRY 346
E + +H I+I + + + ++ SDG +S A ++ GLK+ PS FQ R
Sbjct: 677 EHIIIHPRHIDIPLEDRGNMKSSQPDMSDGCALMSVSLANRIKDCLGLKEENPSCFQGRI 736
Query: 347 GGYKGVVAAD------------PTSSKKLSLR----DSMRKYESELTKLDVLAWSK-YQP 389
G KG+ D S +L + D + +V++WSK +P
Sbjct: 737 AGAKGIWMVDGRNIAFKGEECIQISGSQLKTKPHPSDCRMMLDDHQLTFEVVSWSKELRP 796
Query: 390 CFLNRQLISLLSTLGIWDEIFEKKQREAV----RQLDAILTDPLKAQEALELMS------ 439
LN QL+ +L G+ + + R + ++ I+T+ + ++ ++
Sbjct: 797 VNLNVQLLMVLQHGGVQTDRLKNLVRCEMNTWYQEFKGIITNEIASRAWVQKQGLYEKRK 856
Query: 440 -------PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 492
P EN LL G+ P +L L+TF L + +I IP
Sbjct: 857 TRRIDDFPTENVEQAILLLDSGFHPLKSVYLMNRLKTFLDDYCARLDS-LKIRIPESTYA 915
Query: 493 MGCLDETRTLNYGQVFVQIS----GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 548
D L +V + S GY L G V+V +NP
Sbjct: 916 YCIADPYNVLAEDEVHLGFSRPWDSEGYTDLDGMD-----------------VLVGRNPA 958
Query: 549 LHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQ 608
P D++ +AV L H D +VFP G P + SG D DGD + CWD +L+
Sbjct: 959 HLPSDIQKRRAVFKKELRHFKDVIVFPTAGALPLASMLSGGDYDGDQVWTCWDPQLVNQF 1018
Query: 609 QDPPMD 614
+ P D
Sbjct: 1019 TNTPFD 1024
>gi|336268466|ref|XP_003348998.1| hypothetical protein SMAC_02019 [Sordaria macrospora k-hell]
gi|380094257|emb|CCC08474.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1403
Score = 88.6 bits (218), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 136/333 (40%), Gaps = 49/333 (14%)
Query: 309 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK---LSL 365
T V +DG+G++S A+K+ GL D P SA Q R+G KG+ D +
Sbjct: 704 TDEVMNDGVGRMSRSVAKKIRDVLGLGDVP-SAVQGRFGSAKGMWVIDVNDMGDDDWIET 762
Query: 366 RDSMRKYESELT-----KLDVLA-WSKYQPCFLNRQLISLLST---------LGIWDEIF 410
S RK+E + L+V + S+ + LN QL+ +L I D +
Sbjct: 763 YPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLLPVLEDRAMDKVKMRQAIGDRLV 822
Query: 411 EKKQREAVRQLDAILTDPLK-AQEALELMS-----------------PGENTNILKELLI 452
QR+ Q A L P++ Q E S P L L+
Sbjct: 823 NDLQRQFSEQKHA-LNRPVEFRQWVYESYSTRATRVSHGRVPFLAGLPDSQEETLNYLMN 881
Query: 453 CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQIS 512
G+ P + FL + + K L++K I + + D L +V V
Sbjct: 882 SGFDPKKQKFLQDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIADFWDVLEENEVHV--- 938
Query: 513 GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCV 572
G SS F + V+VA++P P D++ ++AV P LH + D +
Sbjct: 939 --------GFSSKFRDEEESFTLLSDCDVLVARSPAHFPSDIQRVRAVFKPELHMLKDVI 990
Query: 573 VFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
+F KG P + SG D DGD+ +VCWD E++
Sbjct: 991 IFSTKGDIPLAKKLSGGDYDGDMAWVCWDPEIV 1023
>gi|302893516|ref|XP_003045639.1| hypothetical protein NECHADRAFT_39599 [Nectria haematococca mpVI
77-13-4]
gi|256726565|gb|EEU39926.1| hypothetical protein NECHADRAFT_39599 [Nectria haematococca mpVI
77-13-4]
Length = 1363
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 139/328 (42%), Gaps = 49/328 (14%)
Query: 313 FSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK-----LSLRD 367
DGIG++S ARKVA+ GL + P AFQ R G KG+ D +
Sbjct: 686 MGDGIGRMSRSLARKVATHLGLLE-APCAFQARIGSAKGMWIVDVEDDGLDDDDWIETYP 744
Query: 368 SMRKYESELTKL-----DVLAWSK-YQPCFLNRQLISLLSTLG---------IWDEIFEK 412
S RK+E + + +V WS+ +P LN+Q I +L I +
Sbjct: 745 SQRKWECDYLDVHHRTFEVREWSRELRPAALNQQFIPVLEAQAPRPRLMRDAIAAHLVNG 804
Query: 413 KQREAVRQLDAILTDPLK----AQEALELMS----------PGENTNILKELLICGYKPD 458
E Q+ A + P + S P + +++ LL G++
Sbjct: 805 LDEEIGGQM-AAMAHPTNLRGWTHRGFDRSSVGHVPFLGGLPERDEDVISYLLDAGFEAT 863
Query: 459 AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQ 518
L ++ + + + +L+ K I IP +D T TL G+V Q++ + Q
Sbjct: 864 KCRHLRDLVWSMQKRQADQLKAKMNIKIPRSTYAYMVVDFTGTLEEGEV--QLAFSSKFQ 921
Query: 519 LHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQK 577
GES ++ G+ ++VA+ P D++ +KAV P L + D +VF K
Sbjct: 922 ADGESDT----------LLDGIDILVARAPAHFVSDIQKVKAVFRPNLKRLKDVIVFSSK 971
Query: 578 GMRPHPNECSGSDLDGDIYFVCWDDELI 605
G P + SG D DGD +VCWD +++
Sbjct: 972 GKSPLADLLSGGDYDGDKAWVCWDPKIV 999
>gi|302823993|ref|XP_002993644.1| hypothetical protein SELMODRAFT_431698 [Selaginella moellendorffii]
gi|300138572|gb|EFJ05336.1| hypothetical protein SELMODRAFT_431698 [Selaginella moellendorffii]
Length = 884
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 115/467 (24%), Positives = 195/467 (41%), Gaps = 86/467 (18%)
Query: 312 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIR--YGG--YKGVVAADPT-SSKKLSLR 366
+ +DG G +S + A K P+ Q+R Y G KG + T K + R
Sbjct: 287 IHTDGTGFISEDLA---------KQEYPALLQVRLFYHGIAVKGTLLTLKTLQHKTIVYR 337
Query: 367 DSMRKYESE--------LTKLDVLAWSKYQPCF-LNRQLISLLSTLGIWDEIFEKKQREA 417
DSM K +++ L++ S P L+R +I+LL G+ + F + +EA
Sbjct: 338 DSMLKVKADPKLANCPSFNSLEICTTSHKPPVASLSRYVIALLLEGGVPESFFIQVVQEA 397
Query: 418 VRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLE 477
+ + L D A S G+ + + +++ G P + FL L T ++L +
Sbjct: 398 IAKAMTPLQDIAAAHRLCSRFSFGD---MPRRMILAGI-PLTDHFLRNSLMTMIRTQL-K 452
Query: 478 LRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIV 537
K + + +MG D T TL QV + + LH
Sbjct: 453 RYAKANVPLEGSYYLMGSADPTNTLARNQVAILLENG---PLHRHK-------------- 495
Query: 538 QGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD----CVVFPQKGMRPHPNECSGSDLDG 593
V+V K+P +HPGDV V +A L + ++FP KG R +E + SDLDG
Sbjct: 496 ---VLVYKHPGMHPGDVHVFEATWNQELESSLGNSKYVIIFPTKGPRSVVHEIANSDLDG 552
Query: 594 DIYFVCWDDE---LIPPQ---QDPPMDYTPA--QSMQLDHDVQIEDVEEYFTNYIVNDSL 645
D+Y++C +++ L PQ Q+ + T A + + +V + + F I +
Sbjct: 553 DLYWICTNEQVSNLYKPQLPWQEKRTNGTTAVPSCLGMSPEVIMSRLVAMFLRAIFKPNF 612
Query: 646 GIIANA-----------HTVFADREPRKARSEPCLQLAEKFSIAVDFPKTG--------- 685
I A T F + R+ R L+LA+ + +A+D KTG
Sbjct: 613 AISRAATNWLIHMDKYLSTSFDNVREREFRQNCLLELADLYYLALDADKTGEMVTIEDRL 672
Query: 686 VPAEIPPHLYVKEYPDF-----MEKPDKPTYESQNVIGKLFRAVKDI 727
+ +I PH V+E + +++ D Y S ++ GK++ V ++
Sbjct: 673 LCDKIKPHFLVEENSNNPNRRKIQQQDN-VYRSTSIFGKIYNVVTEV 718
>gi|242216941|ref|XP_002474274.1| predicted protein [Postia placenta Mad-698-R]
gi|220726566|gb|EED80511.1| predicted protein [Postia placenta Mad-698-R]
Length = 998
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 133/303 (43%), Gaps = 47/303 (15%)
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNV---AKY 274
+R+G+L+ D + FL F+ ++E F + A +++GN R++ + KY
Sbjct: 71 MRDGLLLRDEHYTFLGFTDGHVKEGKLVFFREDASWSVARFMDYIGNLRDVYSAYGYGKY 130
Query: 275 AARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL 334
AARL SFSS+ E+L V + IPD + G + SDG G + FA V G+
Sbjct: 131 AARLALSFSSTVESLDVPFVKAARIPDRRARDGS---LHSDGCGLIRHSFAMDVCRNNGI 187
Query: 335 KDNPPSAFQIRYGGYKGVVAADPTSS-KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLN 393
+ FQIR GG KG++ P + K++LR ++R+
Sbjct: 188 APD-TCVFQIRRGGIKGLLVRYPDNQFDKVTLRMAIRR---------------------- 224
Query: 394 RQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL-- 451
IFEK ++ + + IL + +A++ ++ NT + L
Sbjct: 225 --------------AIFEKMLQDQLDLIGCILHNRDQAEKYIKGELDASNTTAFNQDLYA 270
Query: 452 ICGYKPD-AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQ 510
I K D EP++ L+ F+ + L K + + + + G +DE+ L +VF+
Sbjct: 271 ILLAKHDLNEPYVEWKLRQFQQQQCNLLHKKLNLRVEDSCYVFGVIDESGVLEEDEVFLN 330
Query: 511 ISG 513
+ G
Sbjct: 331 LPG 333
Score = 41.2 bits (95), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 588 GSDLDGDIYFVCWDDELIPPQQDPPMDY--TPAQSMQ----LDHDVQIEDVEEYFTNYIV 641
G DLDGD YFV W+ LIP P TP + + L D + + F +
Sbjct: 345 GRDLDGDEYFVTWEPGLIPRDMPEPQHRAGTPTANTKPPRRLTEDAMNDAALDTFIRHKY 404
Query: 642 NDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGV-PAEI 690
N +L A AD P A +LA A+D K+G PA+I
Sbjct: 405 NKTLRFAAKKWLDVADATPHLANYPYAQELAPIIESALDCIKSGADPADI 454
>gi|380489167|emb|CCF36884.1| RNA-directed RNA polymerase [Colletotrichum higginsianum]
Length = 1354
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/330 (26%), Positives = 143/330 (43%), Gaps = 49/330 (14%)
Query: 312 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK-KLSLRD--S 368
V +DGIG++S ARKV GL D P SA Q R+G KG+ D + KL L S
Sbjct: 654 VMNDGIGRMSRSLARKVRDVLGLSDVP-SAIQGRFGPAKGMWLTDISEEDGKLWLETWPS 712
Query: 369 MRKYESELT------------KLDVLAWS---KYQPCFLNRQLISLLSTLGIWDEIFEKK 413
RK++S+ +D + S ++ P +R + L I + ++
Sbjct: 713 QRKWDSDFKDPEHRTLEVRSHAMDTKSASLNLQFLPVMEDRAIDKDLMRETIGKNLVDEL 772
Query: 414 QREAVRQLDAILTDPLKAQEALELMS-----------------PGENTNILKELLICGYK 456
RE Q +A+ L Q + S P + + L+ G++
Sbjct: 773 NREIEEQKNAMKYSLLFRQYVNKGASTRKQRLTNGRIPFLGGLPDSSEERMNFLIDGGFE 832
Query: 457 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGY 516
P ++ +L + + R + +L K I +P + +D L G+V + S
Sbjct: 833 PQSQKYLQDLSWSLRRAHCDKLLKKMSIKVPESAYLFMVIDFWNVLEEGEVHLCFSS--- 889
Query: 517 RQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFP 575
++ FS S ++ G V+VA++P DV+ +KAV P LH + D +VF
Sbjct: 890 ---KFQTDTFSDS------MLHGCDVLVARSPAHFVSDVQRVKAVFKPELHAIKDVIVFS 940
Query: 576 QKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
KG P ++ SG D DGD +VCWD ++
Sbjct: 941 AKGNVPLADKLSGGDYDGDKAWVCWDPAIV 970
>gi|429856861|gb|ELA31752.1| RNA-dependent RNA polymerase [Colletotrichum gloeosporioides Nara
gc5]
Length = 1365
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 101/396 (25%), Positives = 173/396 (43%), Gaps = 57/396 (14%)
Query: 250 RYGLTAAEIREWMGNF--REIRNVAKYAARLGQSFSSSKETLSVHMDEI-EIIPDVKIEI 306
R L ++ +W+ E + K AR+ S + + ++ ++I D+ I
Sbjct: 615 RVKLEVRDMLDWLLQLDCNEHQPYLKLFARIQLGLSKTTPVVVLNRNQIRHQEKDMLSPI 674
Query: 307 GKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK---L 363
GK V +DGIG++S + A+K+ + GL+D P SA Q R+G KG+ D + +
Sbjct: 675 GK---VMNDGIGRMSPKLAQKIKNVLGLQDIP-SAIQGRFGPAKGMWLIDIQDTGDDLWI 730
Query: 364 SLRDSMRKY-----ESELTKLDVLAWS-KYQPCFLNRQLISLLSTLG---------IWDE 408
S RK+ + E L++ + + + + LN Q + +L I D
Sbjct: 731 ETWPSQRKWNCDYLDPEHRTLEIKSHAAEPRSASLNIQFLPVLEDRAVDKPGMRKAIGDS 790
Query: 409 IFEKKQREAVRQLDAILTDPLKAQEALELMS------------------PGENTNILKEL 450
+ ++ RE Q +A + P++ ++ + S P N + L
Sbjct: 791 LVDELNRELEGQKNA-MKYPVQFRQWVNENSIGRKQRLIHNSVPFLAGLPDSNEETMNFL 849
Query: 451 LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQ 510
+ G++P + F+ + R K L+ K I IPN +D L +V +
Sbjct: 850 IDGGFEPSKQKFIQDIAWNLRRQKCENLKKKMSIKIPNSAYFYMVIDFWGVLEENEVHLC 909
Query: 511 ISGAGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMV 569
S + ES FS S ++ G V+VA++P DV+ +KAV P LH +
Sbjct: 910 FSS----KFQTES--FSDS------MLHGCDVLVARSPAHFVSDVQRVKAVFKPELHALK 957
Query: 570 DCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
D +VF KG P ++ SG D DGD +VCW+ ++
Sbjct: 958 DVIVFSAKGDIPLADKLSGGDYDGDKAWVCWEPAIV 993
>gi|336470141|gb|EGO58303.1| hypothetical protein NEUTE1DRAFT_82729 [Neurospora tetrasperma FGSC
2508]
gi|350290166|gb|EGZ71380.1| RNA-dependent RNA polymerase [Neurospora tetrasperma FGSC 2509]
Length = 1402
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 97/383 (25%), Positives = 152/383 (39%), Gaps = 55/383 (14%)
Query: 309 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKG--VVAADPTSSKK-LSL 365
T V +DG+G++S A+++ GL D P SA Q R+G KG V+ D T + +
Sbjct: 703 TGEVMNDGVGRMSRSVAKRIRDVLGLGDVP-SAVQGRFGSAKGMWVIDVDDTGDEDWIET 761
Query: 366 RDSMRKYESELT-----KLDVLA-WSKYQPCFLNRQLISLLST---------LGIWDEIF 410
S RK+E + L+V + S+ + LN QL+ +L I D +
Sbjct: 762 YPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLLPVLEDRARDKVKMRQAIGDRLI 821
Query: 411 EKKQREAVRQLDAILTDPLK-AQEALELMS-----------------PGENTNILKELLI 452
QR+ Q A L P++ Q E S P L L+
Sbjct: 822 NDLQRQFSEQKHA-LNRPVEFRQWVYESYSSRATRVSHGRVPFLAGLPDSQEETLNFLMN 880
Query: 453 CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQIS 512
G+ P + +L + + K L++K I + + D L +V V
Sbjct: 881 SGFDPKKQKYLQDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHV--- 937
Query: 513 GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCV 572
G SS F + V+VA++P P D++ ++AV P LH + D +
Sbjct: 938 --------GFSSKFRDEEESFTLLSDCDVLVARSPAHFPSDIQRVRAVFKPELHSLKDVI 989
Query: 573 VFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDV 632
+F KG P + SG D DGD+ +VCWD ++ + M P S L D
Sbjct: 990 IFSTKGDVPLAKKLSGGDYDGDMAWVCWDPAIVDGFVNAEMPLEPDLSRYLKKD------ 1043
Query: 633 EEYFTNYIVNDSLGIIANAHTVF 655
+ F + + G A T +
Sbjct: 1044 KTTFKQLMASHGTGSAAKEQTTY 1066
>gi|171685170|ref|XP_001907526.1| hypothetical protein [Podospora anserina S mat+]
gi|170942546|emb|CAP68197.1| unnamed protein product [Podospora anserina S mat+]
Length = 1478
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 99/400 (24%), Positives = 165/400 (41%), Gaps = 68/400 (17%)
Query: 254 TAAEIREWMGNFREIRNVA----KYAARLGQSFSSSKETLSVHMDEIEIIP-DVKIEIGK 308
T +++ W+ N E +N + K +R+ S + T+ +I + P D+ IGK
Sbjct: 733 TVSQMLNWLLNLDEPKNQSQPHLKLFSRIQLGLSKTFPTVIFSASQIFVQPQDMLSPIGK 792
Query: 309 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVV---AADPTSSKKLSL 365
V +DG+G++S ARK+ GL + P SA Q R G KG+ D + +
Sbjct: 793 ---VMNDGVGRMSRTVARKIRDIMGLTEIP-SAVQGRIGSAKGMWIMDVLDTGDEEWIET 848
Query: 366 RDSMRKYESELTKLDVLA--------WSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREA 417
S RK+E + +D+ ++ + LN Q + +L E K + +
Sbjct: 849 WLSQRKWECDPQTVDIHQRTLEIRAYATELKSAGLNLQFLPVL-------EDRAKDKAQM 901
Query: 418 VRQLDAILTDPLKAQ---------EALELMS-----------------------PGENTN 445
R + A LT+ LK + L L P +
Sbjct: 902 KRAIGARLTNDLKKEFDDQKAAFKHPLLLRQWLHENWSGRADRVKNEVAFLGGLPEKKEE 961
Query: 446 ILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYG 505
+L LL G+ P + ++ + + K L TK I + + +D L G
Sbjct: 962 VLNLLLHSGFDPKHQKYIQDIAWELQKQKCDILSTKLNIKVGRSAYIYMVVDFWEVLEEG 1021
Query: 506 QVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 565
+V V S + G++ S + + V+VA++P DV+ ++AV P L
Sbjct: 1022 EVHVGFSS----KFRGDADDTSYT-----LLSDCDVLVARSPAHFASDVQRVRAVFKPQL 1072
Query: 566 HHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
H + D +VF KG P + SG D DGD+ +VCWD ++
Sbjct: 1073 HALKDVIVFSSKGNVPLAEKLSGGDYDGDMAWVCWDPLIV 1112
>gi|251765119|sp|Q5QMN5.2|RDR3_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 3; Short=OsRDR3
Length = 1153
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 156/680 (22%), Positives = 266/680 (39%), Gaps = 146/680 (21%)
Query: 155 FCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRI 214
F GP I + L+ D DN L + F+ + D TD S T Y ++
Sbjct: 382 FKGPYIENTRTHLQKVVGD-DNVLVVKFMGKLSDT--KTDFS---------TYCEHYHKV 429
Query: 215 LSTLRNGILIGDRKFEFLAFSSSQ------------------------LRESSAWMFASR 250
+GI++G R++ F + +R S W
Sbjct: 430 A---EDGIVLGLRRYRFFVYKDGGKEEKLKQEKIEDKNKCTSPVMCYFVRTESGWNMDEP 486
Query: 251 Y---GLTAAEIREWMGNFREIRNVAKYAAR----LGQSFSSSKETLSVHMDEIEIIPDVK 303
Y G T + RE + +AKY AR L ++ + + +V++ I+ P +
Sbjct: 487 YILSGRTVGQARELFMHISSAPTLAKYMARFALILSKTITWDADLSAVYVRRIKDEPCMD 546
Query: 304 -----IEIGKTKYVFSDGIGKVSAEFARKVASKCG----LKDNPP-SAFQIRYGG--YKG 351
+ + + +DG G VS + A + LK P F++ Y G KG
Sbjct: 547 RHGNVVHKDQEPLIHTDGTGLVSVDLALNCPTSIFKGKFLKPQPLLMQFRLFYNGSAVKG 606
Query: 352 VVAAD---PTSSKKLSLRDSMRKYESE-----------------------------LTKL 379
V D P ++ + +R SM K E+ +
Sbjct: 607 TVLVDRRLPPAT--ILIRPSMVKIETHPELSGVRSVNSSEIVSARNAKKSLSGVQSVNSF 664
Query: 380 DVLAWS-KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL- 437
++++ S + + +R LI+LL G+ +E F + + A+ + D ++AL +
Sbjct: 665 EIVSTSNRPRRTLTSRFLITLLCYGGVPEEYFLELLQSAIEGAENACYD---YEDALRIA 721
Query: 438 MSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLD 497
S + + + +I P E +L L F A + + + +I I +M D
Sbjct: 722 FSYADMEDSMSARMILSGIPLEESYLQHRLD-FMAQQERKGIKQGKIPIDECYYLMDTTD 780
Query: 498 ETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 557
T TL +V V + E+ FS G V+V K+P LH GD+ VL
Sbjct: 781 PTGTLRPNEVCVIL----------ENGQFS-----------GDVLVYKHPGLHFGDIHVL 819
Query: 558 KAVNVPALH-----HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPP 612
KA + L + ++FP G R +E + SD DGDIY+V + +L+ P
Sbjct: 820 KATYIRDLEKEYVGYAKYAILFPISGPRSLADEMANSDFDGDIYWVSKNPKLLE-HFKPS 878
Query: 613 MDYTPAQSMQLDHDVQIEDVEE-----------YFTNYIVNDSLGIIANAHTVFADRE-- 659
+ A + + +D E T + + +LG A++ + DR
Sbjct: 879 EPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTPSFALGTAADSWLAYMDRLLT 938
Query: 660 ------PRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYES 713
+K E L+L + + +A+D PKTG IP L VK+YP FM + +Y S
Sbjct: 939 DSLDEIEKKLIEEKMLKLVDLYYLALDAPKTGNKVNIPSDLMVKQYPHFMGR--SFSYHS 996
Query: 714 QNVIGKLFRAVKDIAPHTSC 733
+++G+++ +D+ SC
Sbjct: 997 SSILGQIYDKAEDVESLRSC 1016
>gi|299740358|ref|XP_001838853.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298404206|gb|EAU82968.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1548
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 76/146 (52%), Gaps = 10/146 (6%)
Query: 553 DVRVLKAVNVPALHHMVDCVVFP----QKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQ 608
D L+AV+ P L H+VDC+VF + G +P P+ SG DLDGD +FVCWD +L+PP+
Sbjct: 305 DCLKLRAVDHPQLSHLVDCLVFASAVRRPGSKPAPSLSSGGDLDGDEFFVCWDQDLVPPR 364
Query: 609 QDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPC 668
P DY P + + V D+ +F +Y + + ++ H +A P A C
Sbjct: 365 VSEPYDYPPNKEPR-PKAVTRADLANHFASY-TSSGVAKVSALHNKWAISSPLGALCVEC 422
Query: 669 LQLAEKFSIAVDFPKTGVPAEIPPHL 694
+L S +VD G P +IP L
Sbjct: 423 QELNALHSQSVD----GAPIKIPERL 444
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 128/282 (45%), Gaps = 44/282 (15%)
Query: 209 RIYTRILSTL-RNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFRE 267
R T L+ + + G+ + ++ F S+SQLR S ++ + + +G+F
Sbjct: 32 RTTTEYLNRMFKAGVFLNGVQYRFYHHSNSQLRGRSCFLREANSDKELDDRIYALGDFSR 91
Query: 268 IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARK 327
I N+AK A R+G FSS++ ++ +E I D IEIG VFSDG G +S ++
Sbjct: 92 INNIAKRAKRIGLLFSSAEVDFNLDPTFVEDIGD--IEIGGE--VFSDGCGLISKSLTKQ 147
Query: 328 VASKCGLKDN----PPSAFQIRYGGYKGVVAADPTSSKK------------LSLRDSMRK 371
+A L P QIRY GYKGV+ P ++ R SM+K
Sbjct: 148 IAKAKKLMFRGIRYTPVVIQIRYEGYKGVLMLHPDLDERNRQREPGTPPCYAQFRKSMKK 207
Query: 372 YESELT-KLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQRE------AVRQLDA 423
+++ V+ +SK Y LN +I+L+ +LG+ E KQ+E ++ QLD
Sbjct: 208 FKATSDHSFSVVGYSKPYSFGRLNNDIITLIHSLGVTKEKLVAKQQEYFDWIASITQLD- 266
Query: 424 ILTDPLKA------------QEALELMSPGENTNILKELLIC 453
TDP A EA+ L E + IL +L C
Sbjct: 267 --TDPTAALDFLSCTDKYAEAEAIFLHDAEERSKILNDLRDC 306
>gi|346978355|gb|EGY21807.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1394
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 99/403 (24%), Positives = 172/403 (42%), Gaps = 63/403 (15%)
Query: 250 RYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL-SVHMDEIEIIPDVKIEIGK 308
R + E+ EW R N A+ + +L + S T ++ + +I + K
Sbjct: 596 RTKMKLTEMLEWAIAIRA--NAAQPSLKLFSRLALSNRTYPTIIFEPGQITHHAEDICSK 653
Query: 309 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV--VAADPTSSKKLSLR 366
+ V +DG+ ++S + A+ +A GL D P SA+Q R+G KGV V DP + +
Sbjct: 654 SGKVMNDGVAEMSPKAAKAIAEYLGLTDTP-SAYQGRFGSAKGVWIVGTDPENKDDFEIE 712
Query: 367 D--SMRKYESELTKLDVLAW---SKYQP---CFLNRQLISLLSTLGIWDEIFEKKQREAV 418
S RK+E + D + ++ +P LN Q I +L + + + R A+
Sbjct: 713 TYPSQRKWECDFWDEDHRTFEVKTEARPLRAANLNMQFIPVLVNGDVKRGTDKHRMRNAI 772
Query: 419 -------------RQLDAILTDPLKAQEAL-ELMSPGENTNILKE--------------- 449
RQ + + DP++ ++ + E G + L++
Sbjct: 773 AKCLRTTLKEELARQRSS-MDDPVQFRQWIHESFFQGYRNDRLRDQNIRFLAGLPDNEAE 831
Query: 450 ----LLICGYKPDAEPFLSMM--LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN 503
LL G++P FL M FR +LL+ + ++ M+ +D L
Sbjct: 832 RVNLLLDAGFQPKKLSFLREMSYKMAFRKCELLKSKMNIKVGCSTYAKMV--VDFKGVLE 889
Query: 504 YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNV 562
G++ + S + FS + ++ G+ V+VA+ P P D++ ++AV
Sbjct: 890 EGEIHLGFS----TKFMDPDGQFSDT------LLHGMDVLVARAPAHFPSDIQRVRAVFR 939
Query: 563 PALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
P L H+ D +VF KG P + SG D DGD +VCWD ++
Sbjct: 940 PELRHLKDVIVFSIKGDSPLADLLSGGDYDGDQAWVCWDSTIV 982
>gi|302411624|ref|XP_003003645.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261357550|gb|EEY19978.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 1283
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 108/459 (23%), Positives = 181/459 (39%), Gaps = 73/459 (15%)
Query: 210 IYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA--------------------- 248
+TR + + G+ G +E A + ++L++ FA
Sbjct: 534 FFTRDVDKVTAGLAQGLTAWEGKATTKTRLKQCRVCCFAEGGHSFSPSNRIPAKADAKNV 593
Query: 249 -SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL-SVHMDEIEIIPDVKIEI 306
R + ++ EW R N A+ + +L + S T ++ + +II +
Sbjct: 594 NGRTKMKLTDMLEWAIAIRA--NAAQPSLKLFSRLALSNRTYPTIVFEPGQIIHHAEDIC 651
Query: 307 GKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV--VAADPTSSKKLS 364
K+ V +DG+ ++S + A+ +A GL D PSA+Q R+G KGV V DP +
Sbjct: 652 SKSGKVMNDGVAEMSPKAAKVIAEYLGLADT-PSAYQGRFGSAKGVWIVGTDPDNKDDFE 710
Query: 365 LRD--SMRKYESELTKLDVLAW---SKYQP---CFLNRQLISLLSTLGIWDEIFEKKQRE 416
+ S RK+E + D + ++ +P LN Q I +L + + + R
Sbjct: 711 IETYPSQRKWECDFWDEDHRTFEVKTEARPLRAANLNMQFIPVLVNGDVKRGTDKHRMRN 770
Query: 417 AVRQ-LDAILTDPLKAQEALELMSPGENTNILKELLICGYKPD----------------- 458
A+ L L + L Q + + P + + E GY+ D
Sbjct: 771 AIAGCLRTTLKEELARQRS-SMNDPVQFRQWIHENFFQGYRSDRVRDQNIRFLAGLPDNE 829
Query: 459 AEPFLSMMLQTFRASKLLELRT--------KTRIFIPNGRSMMGCLDETRTLNYGQVFVQ 510
AE ++ FR KL LR K + +GC Y ++ V
Sbjct: 830 AERVNMLLDAGFRPKKLSFLREVSYKMAFRKCELLKSKMNIKVGC------STYAKMVVD 883
Query: 511 ISGA---GYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALH 566
G G L + ++ G+ V+VA+ P P D++ ++AV P L
Sbjct: 884 FKGVLEEGEIHLGFSTKFMDPDGQFSDTLLHGMDVLVARAPAHFPSDIQRVRAVFRPELR 943
Query: 567 HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
H+ D +VF KG P + SG D DGD +VCWD ++
Sbjct: 944 HLKDVIVFSIKGDSPLADLLSGGDYDGDQAWVCWDPAIV 982
>gi|156058730|ref|XP_001595288.1| hypothetical protein SS1G_03377 [Sclerotinia sclerotiorum 1980]
gi|154701164|gb|EDO00903.1| hypothetical protein SS1G_03377 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1390
Score = 85.1 bits (209), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/377 (24%), Positives = 156/377 (41%), Gaps = 55/377 (14%)
Query: 273 KYAARLGQSFSSSKETLSV---HMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVA 329
K AR S ++ T++V H+ E I + + K YV +DG G++S ARK+
Sbjct: 622 KLFARTALVVSRNRATVTVDQAHIRRREDIRNPDVNNPKKTYVMTDGAGRLSLALARKIV 681
Query: 330 SKCGLKDNPPSAFQIRYGGYKGVVAADPTS---SKKLSLRDSMRKYE-SELTKLDVLAWS 385
+ L P+AFQ R+G KG+ D + S + L D K+E E + WS
Sbjct: 682 FELELS-YIPAAFQGRFGEAKGLWIVDRSEDIESDWIELYDEQCKWERGEEGSPEFDHWS 740
Query: 386 K-----------YQPCFLNRQLISLL--------STLGIWDEIFEKKQREAVRQLDAILT 426
+ LN QL+ LL + ++ ++++ +L LT
Sbjct: 741 HRTFEVVGHSAPLKTADLNTQLLPLLVHQATDPRAMRNAILNALKEGLKQSLEELKTALT 800
Query: 427 DPLKAQEALELMS------------------PGENTNILKELLICGYKPDAEPFLSMMLQ 468
P + + + L + P ++ + L LL G+ P ++ + +
Sbjct: 801 SPQELRSWIRLTNSSVQDRVKNGAIQWRGGLPAKHEDRLSTLLDAGFDPRKLHYIMELAK 860
Query: 469 TFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSS 528
K EL+ + I + + D L +V + S + ES L +
Sbjct: 861 KAFDMKCEELKERLNITVAKSTKVYMVPDFWGVLEPNEVHLNFSSF----VDNESGLSDT 916
Query: 529 SRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSG 588
+ V+VA+NP +P D++ + AV+ L H+ D +VF KG ++ SG
Sbjct: 917 Q------LENVDVLVARNPAHYPSDIQRVTAVSKHELRHLKDVIVFSTKGYPSLADKLSG 970
Query: 589 SDLDGDIYFVCWDDELI 605
D DGDI +VCWD ++
Sbjct: 971 GDYDGDIAWVCWDPAIV 987
>gi|7505900|pir||T23669 hypothetical protein M01G12.12 - Caenorhabditis elegans (fragment)
gi|25395342|pir||F87936 protein M01G12.12 [imported] - Caenorhabditis elegans
Length = 604
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 88/168 (52%), Gaps = 25/168 (14%)
Query: 136 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 195
+++G V +V TP+RV + PE+ + NRVLR+F RD + LR++F D++ K+ +
Sbjct: 443 IEEGYQRVRKVIFTPTRVIYTPPEMIMGNRVLRNFDRDGTHVLRVTFRDDNNRKMRA--- 499
Query: 196 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA------- 248
+ T + + L +GI++ +R F FL SSSQ+R++ A+
Sbjct: 500 --------NATGELLDICVKKYLEHGIVVANRDFGFLGCSSSQMRDNGAYFMVKNTDNRH 551
Query: 249 -------SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 289
S++ +R +GNF +I N+ K ARLGQ F+ S+ ++
Sbjct: 552 KNACKMNSKFKPNIDSVRNQLGNFLQIENIPKLMARLGQCFTQSRVSV 599
>gi|342876307|gb|EGU77937.1| hypothetical protein FOXB_11547 [Fusarium oxysporum Fo5176]
Length = 821
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 134/329 (40%), Gaps = 48/329 (14%)
Query: 313 FSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAAD----PTSSKKLSLRDS 368
+DGIG++ R+V GL D P+A Q R GG KG+ D P+ + + + S
Sbjct: 151 MNDGIGRIFHSLLREVRDVMGL-DFLPTAIQARIGGAKGLWMMDLSPYPSDERWIEIYPS 209
Query: 369 MRKYESELT-----KLDVLAWSKYQ-PCFLNRQLISLLSTLGIWDEIF--------EKKQ 414
RK+ + L+V++ S Y P LN Q I +L I ++ EK +
Sbjct: 210 QRKWHCNWSDPAHRTLEVVSVSSYTGPASLNLQFIPILEERAIDRKLMRTTICERIEKHR 269
Query: 415 REAVRQLDAILTDPLKAQEALELMS------------------PGENTNILKELLICGYK 456
R + A + P ++ + S P + + L G++
Sbjct: 270 RNDLGNAKAAMEIPEVFRKWIHETSFTTFGDSQDGTSWFVGGLPADWPGTMSFLADGGFE 329
Query: 457 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGY 516
P FL+ M+ + + ++ TK I I S + +D L +V + S A
Sbjct: 330 PRRLDFLNTMMFNHQKQRWKQMETKLHIKIAKSTSALMTIDFQGVLAPNEVQLCFSPA-- 387
Query: 517 RQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQ 576
F + + V+V + P P D++ + AV P L H + ++F
Sbjct: 388 ---------FDDGQQTLDDLGGFDVLVGRCPAHLPSDIQKVNAVFKPELRHFKNVIIFSS 438
Query: 577 KGMRPHPNECSGSDLDGDIYFVCWDDELI 605
G P N+ SG D DGD +VCWD +++
Sbjct: 439 LGDEPLANKLSGGDYDGDKAWVCWDADIV 467
>gi|320034225|gb|EFW16170.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 1289
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 94/387 (24%), Positives = 149/387 (38%), Gaps = 63/387 (16%)
Query: 273 KYAARLGQSFSSSKETLSVHMDEIEIIP---DVKIE----IGKTKYVFSDGIGKVSAEFA 325
K RL S + T+ V + I I P D+ +E + ++ SDG +S A
Sbjct: 573 KIFQRLALGLSRTIPTVVVRPEHIIIHPRHIDIPLEDRGNMKSSQPDMSDGCALMSVSLA 632
Query: 326 RKVASKCGLKDNPPSAFQIRYGGYKGVVAAD------------PTSSKKLSLR----DSM 369
++ GLK+ PS FQ R G KG+ D S +L + D
Sbjct: 633 NRIKDCLGLKEENPSCFQGRIAGAKGIWMVDGRNIAFKGEECIQISGSQLKTKPHPSDCR 692
Query: 370 RKYESELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAV----RQLDAI 424
+ +V++WS+ +P LN QL+ +L G+ + + R + ++ I
Sbjct: 693 MMLDDHQLTFEVVSWSRELRPVNLNVQLLMVLQHGGVQTDRLKNLVRCEMNTWYQEFKDI 752
Query: 425 LTDPLKAQEALELMS-------------PGENTNILKELLICGYKPDAEPFLSMMLQTFR 471
+T+ + ++ ++ P EN LL G+ P +L L+TF
Sbjct: 753 ITNEIASRAWVQKQGLYEKRKTRRIDDFPTENVEQAILLLDSGFHPLKSVYLMNRLKTFL 812
Query: 472 ASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQIS----GAGYRQLHGESSLFS 527
L + +I IP D L +V + S GY L G
Sbjct: 813 DDYCARLDS-LKIRIPESTYAYCIADPYNVLAEDEVHLGFSKPWDSEGYTDLDGMD---- 867
Query: 528 SSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECS 587
V+V +NP P D++ +AV L + D +VFP G P + S
Sbjct: 868 -------------VLVGRNPAHLPSDIQKRRAVFKKELRYFKDVIVFPTAGALPLASMLS 914
Query: 588 GSDLDGDIYFVCWDDELIPPQQDPPMD 614
G D DGD + CWD +L+ + P D
Sbjct: 915 GGDYDGDQVWTCWDPQLVNQFTNTPFD 941
>gi|238597177|ref|XP_002394255.1| hypothetical protein MPER_05887 [Moniliophthora perniciosa FA553]
gi|215462994|gb|EEB95185.1| hypothetical protein MPER_05887 [Moniliophthora perniciosa FA553]
Length = 279
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 109/214 (50%), Gaps = 21/214 (9%)
Query: 537 VQGLVVVAKNPCLHPGDVRVLKAVNVPA------LHHMVDCVVFPQKGMRPHPNECSGSD 590
++G ++++P HPGDV+ + A+ P HM + VV P +G R ++ G D
Sbjct: 10 LEGRCTISRSPVAHPGDVQTVHAIGKPPTDKLCLFAHMKNVVVLPSRGKRSLASKLGGGD 69
Query: 591 LDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIE--DVEEYFTNYIVNDSLGII 648
LDGD+Y V EL PP + PM Y +++ L D +E D+ ++ NYI +D LG++
Sbjct: 70 LDGDLYDVITYPELQPPLDNKPMSYEAGETLTLKEDRTVEPRDICDFIVNYINSDVLGLL 129
Query: 649 ANAHTVFADREPRKARSEPCLQLAEKFS----IAVDFPKTGVPAEIP----PHLYVKEYP 700
++ V AD+ C +LA+ S AVD+PK G+P ++ P+ ++ P
Sbjct: 130 SDRLLVIADQSKDGIYDRDCEKLAKLCSQTTYQAVDYPKNGIPVDLDKDRLPNTLIRCKP 189
Query: 701 DF-----MEKPDKPTYESQNVIGKLFRAVKDIAP 729
D+ ++ Y S +G++FR V+ P
Sbjct: 190 DWHAAEVVDPRGTDYYMSTRALGEMFRKVRLAEP 223
>gi|70997928|ref|XP_753696.1| RNA-directed RNA polymerase [Aspergillus fumigatus Af293]
gi|66851332|gb|EAL91658.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus Af293]
Length = 1318
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 110/434 (25%), Positives = 176/434 (40%), Gaps = 73/434 (16%)
Query: 312 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK--------KL 363
V +DG +S A + + G+ N PSAFQ R G KG+ D +S +
Sbjct: 636 VMNDGCALMSRPLANAICDQLGITGNTPSAFQGRIAGAKGLWMVDRHNSGISGGGDDFWI 695
Query: 364 SLRDSMRKYE-----------SELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFE 411
+ DS K + E +V+ WSK P LN QL+++L G E
Sbjct: 696 QISDSQLKIQPHPQAWRGPVDDEKLTFEVVKWSKPLHPVELNTQLLAILEHGGQVREHIA 755
Query: 412 KKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMM----- 466
+ R +R + L++ N+ L LI KP A+ LS +
Sbjct: 756 ELTRAGIRAISQDFASVLES-----------NSAALCRSLIQKIKPMADDGLSGINQRMK 804
Query: 467 -LQTFRAS------KLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR-- 517
L+ + A+ +L E R F P R + CL + ++ +++ + Y
Sbjct: 805 RLEQWTANDAEAIIRLTEAGFAPRSFYPLRRRLGRCLRDLLDRYVDELHIEVPLSTYAFC 864
Query: 518 -----------QLH-GESSLFSSSRSR-QRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVP 563
++H G S+ + +R + + ++ G+ V+V + P P D++ +AV
Sbjct: 865 IADPYGVLKEDEVHFGFSNNWRDARGQFEDNLLDGVDVLVGRLPAHVPSDIQRRRAVWKT 924
Query: 564 ALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD---PPMDYTPAQS 620
L H D +VFP G P + SG D DGD ++CWD ++ Q+ P +Y P
Sbjct: 925 ELRHFKDVIVFPTTGDIPLAHMLSGGDYDGDTPWICWDQNIVQRFQNSDLPTEEYPPEHF 984
Query: 621 MQLDHDVQIEDVEEY-------FTNYIVNDSLGIIANAHTVFA-DREPRKARSEPCLQLA 672
H V + D++ FT + +LG H A D AR++ +LA
Sbjct: 985 GLTKHPVSMRDIQSTDEFLQSAFTFNLTTSNLGRCTVEHEKIAYDESIDSARAK---ELA 1041
Query: 673 EKFSIAVDFPKTGV 686
S VD K GV
Sbjct: 1042 CLLSHLVDGRKGGV 1055
>gi|303319845|ref|XP_003069922.1| RNA dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240109608|gb|EER27777.1| RNA dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 1372
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 94/387 (24%), Positives = 149/387 (38%), Gaps = 63/387 (16%)
Query: 273 KYAARLGQSFSSSKETLSVHMDEIEIIP---DVKIE----IGKTKYVFSDGIGKVSAEFA 325
K RL S + T+ V + I I P D+ +E + ++ SDG +S A
Sbjct: 656 KIFQRLALGLSRTIPTVVVRPEHIIIHPRHIDIPLEDRGNMKSSQPDMSDGCALMSVSLA 715
Query: 326 RKVASKCGLKDNPPSAFQIRYGGYKGVVAAD------------PTSSKKLSLR----DSM 369
++ GLK+ PS FQ R G KG+ D S +L + D
Sbjct: 716 NRIKDCLGLKEENPSCFQGRIAGAKGIWMVDGRNIAFKGEECIQISGSQLKTKPHPSDCR 775
Query: 370 RKYESELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAV----RQLDAI 424
+ +V++WS+ +P LN QL+ +L G+ + + R + ++ I
Sbjct: 776 MMLDDHQLTFEVVSWSRELRPVNLNVQLLMVLQHGGVQTDRLKNLVRCEMNTWYQEFKDI 835
Query: 425 LTDPLKAQEALELMS-------------PGENTNILKELLICGYKPDAEPFLSMMLQTFR 471
+T+ + ++ ++ P EN LL G+ P +L L+TF
Sbjct: 836 ITNEIASRAWVQKQGLYEKRKTRRIDDFPTENVEQAILLLDSGFHPLKSVYLMNRLKTFL 895
Query: 472 ASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQIS----GAGYRQLHGESSLFS 527
L + +I IP D L +V + S GY L G
Sbjct: 896 DDYCARLDS-LKIRIPESTYAYCIADPYNVLAEDEVHLGFSKPWDSEGYTDLDGMD---- 950
Query: 528 SSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECS 587
V+V +NP P D++ +AV L + D +VFP G P + S
Sbjct: 951 -------------VLVGRNPAHLPSDIQKRRAVFKKELRYFKDVIVFPTAGALPLASMLS 997
Query: 588 GSDLDGDIYFVCWDDELIPPQQDPPMD 614
G D DGD + CWD +L+ + P D
Sbjct: 998 GGDYDGDQVWTCWDPQLVNQFTNAPFD 1024
>gi|320587947|gb|EFX00422.1| RNA-dependent RNA polymerase [Grosmannia clavigera kw1407]
Length = 1358
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 102/411 (24%), Positives = 172/411 (41%), Gaps = 55/411 (13%)
Query: 241 ESSAWMFASRYGLTAAEIREWM---GNFREIRN--VAKYAARLGQSFSSSKETLSVHMDE 295
E S W F + L ++ EW+ F E R K +R+ S + T+ ++
Sbjct: 559 EDSEWRFG--HELQVHDMLEWLLQYNRFHENRTQPYLKLFSRIALGLSRTIPTVVFEPEQ 616
Query: 296 IEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAA 355
+ I T V +DGIG++S ARKV + GL D P+A Q R G KG+
Sbjct: 617 MRHHAS-DITAPATGKVMNDGIGRMSLSVARKVRFELGLSD-LPAAVQGRLGCAKGMWIL 674
Query: 356 DPTSSKK---LSLRDSMRKYESELT-----KLDVLAW-SKYQPCFLNRQLISLLSTLGI- 405
DPT + + S RK++ + L+V + S + LN+QL+ +L I
Sbjct: 675 DPTDTGGEDWIETYPSQRKWKCDFVDPDHRTLEVRNYASAVRSAGLNQQLLPVLEDRAID 734
Query: 406 -------WDEIFEKK-------QREAVR---------QLDAILTDPLKAQEALELMS--P 440
+I QR A+ Q ++ D A + + P
Sbjct: 735 KSRMRTVIGDILRGNLYRDLATQRTALEHPLLFSAWVQENSRSRDERSAHCQVRFLGGLP 794
Query: 441 GENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETR 500
++ +++ LL G+ P + + + + +K +L+ K + + + +D
Sbjct: 795 DSDSEVVQFLLSGGFDPRVQKMIWDVAYKIQKAKCEKLKEKLNVRVGRTAYLHMVVDFLG 854
Query: 501 TLNYGQVFV------QISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDV 554
L G+V V Q+ G+ FS S +V V+VA++P DV
Sbjct: 855 VLEEGEVQVCFSSKFQVDADSEPDERGDDGSFSDS-----LLVGTDVLVARSPAHFASDV 909
Query: 555 RVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
+ ++AV L + D V+F +KG P ++ SG D DGD+ +VCWD ++
Sbjct: 910 QRVRAVFRKELCVLKDVVIFSRKGDSPLADKLSGGDYDGDMAWVCWDGRIV 960
>gi|159126570|gb|EDP51686.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus A1163]
Length = 1318
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 110/434 (25%), Positives = 175/434 (40%), Gaps = 73/434 (16%)
Query: 312 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK--------KL 363
V +DG +S A + + G+ N PSAFQ R G KG+ D +S +
Sbjct: 636 VMNDGCALMSRPLANAICDQLGITGNTPSAFQGRIAGAKGLWMVDRHNSGISGGGDDFWI 695
Query: 364 SLRDSMRKYE-----------SELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFE 411
+ DS K + E +V+ WSK P LN QL+++L G E
Sbjct: 696 QISDSQLKIQPHPQAWRGPVDDEKLTFEVVKWSKPLHPVELNTQLLAILEHGGQVREHIA 755
Query: 412 KKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMM----- 466
+ R +R + L++ N+ L LI KP A+ LS +
Sbjct: 756 ELTRAGIRAISQDFASVLES-----------NSAALCRSLIQKIKPMADDGLSGINQRMK 804
Query: 467 -LQTFRAS------KLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR-- 517
L+ + A+ +L E R F P R + CL + ++ +++ + Y
Sbjct: 805 RLEQWTANDAEAIIRLTEAGFAPRSFYPLRRRLGRCLRDLLDRYVDELHIEVPLSTYAFC 864
Query: 518 -----------QLH-GESSLFSSSRSR-QRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVP 563
++H G S+ + R + + ++ G+ V+V + P P D++ +AV
Sbjct: 865 IADPYGVLKEDEVHFGFSNNWRDVRGQFEDNLLDGVDVLVGRLPAHVPSDIQRRRAVWKT 924
Query: 564 ALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD---PPMDYTPAQS 620
L H D +VFP G P + SG D DGD ++CWD ++ Q+ P +Y P
Sbjct: 925 ELRHFKDVIVFPTTGDIPLAHMLSGGDYDGDTPWICWDQNIVQRFQNSDLPTEEYPPEHF 984
Query: 621 MQLDHDVQIEDVEEY-------FTNYIVNDSLGIIANAHTVFA-DREPRKARSEPCLQLA 672
H V + D++ FT + +LG H A D AR++ +LA
Sbjct: 985 GLTKHSVSMRDIQSTDEFLQSAFTFNLTTSNLGRCTVEHEKIAYDESIDSARAK---ELA 1041
Query: 673 EKFSIAVDFPKTGV 686
S VD K GV
Sbjct: 1042 CLLSHLVDGRKGGV 1055
>gi|340959153|gb|EGS20334.1| RNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1441
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 100/409 (24%), Positives = 171/409 (41%), Gaps = 57/409 (13%)
Query: 248 ASRYGLTAAEIREWMGNFR--EIRNVAKYAARLGQSFSSSKETLSVHMDEI-EIIPDVKI 304
+SR+ + +++ +W+ E + K +R+ S + L+ +I D+
Sbjct: 641 SSRFQIKISQMLDWLLQLEHNEDQPYLKLFSRIQLGLSKTIPALTFEPHQIIHREKDILS 700
Query: 305 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVV---AADPTSSK 361
IGK V +DGIG++S ARK+ GL D P SA Q R G KG+ AD +
Sbjct: 701 PIGK---VMNDGIGRMSRSVARKIRDALGLTDIP-SAIQGRMGSAKGMWLMDVADTSDED 756
Query: 362 KLSLRDSMRKYESELT-----KLDVLAW-SKYQPCFLNRQLISLLSTLG-----IWDEIF 410
+ S RK+ L+V + ++ +P LN Q + +L + I
Sbjct: 757 WIETYPSQRKWHCNWNDPAHRTLEVRSVPTELKPAGLNLQFLPILEAQAKDKAQMRYAIG 816
Query: 411 EKKQREAVRQLD---AILTDPLKAQEAL-ELMS-----------------PGENTNILKE 449
E+ +++ Q + + L PLK ++ + E S P L
Sbjct: 817 ERLKKDLETQFELQKSALNHPLKFRQWVNEDWSSRSERVRNGQVLFLGGLPESKHETLFF 876
Query: 450 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFV 509
LL G+ P + +L + + + L+TK I + + +D L +V +
Sbjct: 877 LLNSGFDPKKQKYLQKLAWELQYQRCELLKTKLNIKVGRSAYVYMVVDFWGMLEENEVHL 936
Query: 510 QISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMV 569
S + F+ + V+VA++P DV+ ++AV P LH +
Sbjct: 937 GFSSRFCANTDLDQESFT-------LLADCDVLVARSPAHFVSDVQKVRAVFKPELHALK 989
Query: 570 DCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDEL--------IPPQQD 610
D +VFP KG ++ SG D DGD+ +VCWD ++ +PP+ D
Sbjct: 990 DVIVFPLKGNVALADKLSGGDYDGDMAWVCWDPDIVNSFTNAEVPPEPD 1038
>gi|408399167|gb|EKJ78292.1| hypothetical protein FPSE_01753 [Fusarium pseudograminearum CS3096]
Length = 1388
Score = 83.2 bits (204), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 133/325 (40%), Gaps = 47/325 (14%)
Query: 315 DGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV-----VAADPTSSKKLSLRDSM 369
DGI ++S AR+V++ GL + P AFQ R G KG+ + S
Sbjct: 710 DGIARMSRGLARRVSTHLGLLET-PCAFQARIGSAKGMWIVDVEDDGLDDDVWIETYPSQ 768
Query: 370 RKYESELTKL-----DVLAWSK-YQPCFLNRQLISLLSTLG---------IWDEIFEKKQ 414
RK+E + + +V WS+ + LN Q I +L I + + Q
Sbjct: 769 RKWECKFEDVHHRTFEVREWSRELKSASLNSQFIPVLEAQAPNPNSMRNVIANHLANGLQ 828
Query: 415 REAVRQLDAILTDPLK----AQEALELMS----------PGENTNILKELLICGYKPDAE 460
E QL A +T P + S P + +I+ +L G+
Sbjct: 829 DEIGGQL-AAMTHPTSLRGWTHRGFDRSSLGRVPFVGGLPDHDDDIVSFMLDAGFDATKC 887
Query: 461 PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLH 520
FL ++ + + +L+ K I IP +D T TL G+ VQ++ + Q
Sbjct: 888 RFLRDLVWNNQKRQAEQLKAKMNIKIPRSAYAFMVVDFTGTLEEGE--VQLAFSSKFQAD 945
Query: 521 GESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 580
GES ++VA+ P DV+ ++AV P L + D +VF KG
Sbjct: 946 GESDTLLDDID---------ILVARAPAHFVSDVQKVRAVFRPNLKRLKDVIVFSSKGKS 996
Query: 581 PHPNECSGSDLDGDIYFVCWDDELI 605
P + SG D DGD +VCWD +++
Sbjct: 997 PLADMLSGGDYDGDQAWVCWDPDIV 1021
>gi|425774605|gb|EKV12907.1| RNA-directed RNA polymerase, putative [Penicillium digitatum Pd1]
gi|425776464|gb|EKV14681.1| RNA-directed RNA polymerase, putative [Penicillium digitatum PHI26]
Length = 1445
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 94/379 (24%), Positives = 151/379 (39%), Gaps = 40/379 (10%)
Query: 281 SFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPS 340
S SK +V + +++ ++ T+ V +DG +S A ++ + G+ PS
Sbjct: 757 SLGLSKTFATVKLKPTQVL---RLRDDPTRTVMNDGCALISRPLANQICDQLGITAATPS 813
Query: 341 AFQIRYGGYKGVVAADPTSSKKLSLRDS--------------------MRKYESELTKLD 380
FQ R G KG+ D S +L D + + E +
Sbjct: 814 CFQGRIAGAKGLWMVDCHQSSITTLNDDNIWVQISDSQLKIHPHPQEWVDPVDDEKLTFE 873
Query: 381 VLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL-DAIL-----TDPLKAQE 433
V+ W+K P LN QL+++L G E K R+ V+ L D L P+ +
Sbjct: 874 VVNWAKPLHPVDLNIQLLAILEYGGNVKEYIAKLTRDGVQSLYDDFLEVLRSNSPVGCRA 933
Query: 434 ALELMSP-GENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GR 490
L+ + P GE+ L DAE + F LR K R FI R
Sbjct: 934 LLQKLRPSGEDGTGKARRLEQWVTSDAESIIRFSEAGFAPRDFFPLRMKLRKFITWLLER 993
Query: 491 SMMGCLDETRTLNYGQVFVQISGA-GYRQLH-GESSLFSSSRSR-QRFIVQGL-VVVAKN 546
+ + Y G G ++H G S+ + + + + ++ G+ V+V +
Sbjct: 994 HVEELKIQVPLSTYAYCIADPYGVLGPDEVHFGFSNNWRDPQGQFEDNLLDGVDVLVGRL 1053
Query: 547 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIP 606
P P D++ KAV L H D +VFP G P SG D DGD ++CWD ++
Sbjct: 1054 PAHLPSDIQRRKAVWKTELRHFKDVIVFPTTGNFPLAGMLSGGDYDGDTPWICWDPIIVE 1113
Query: 607 PQQDPPMDYTPAQSMQLDH 625
+ PM P+ ++H
Sbjct: 1114 RFHNSPM---PSHEYPVEH 1129
>gi|242211203|ref|XP_002471441.1| predicted protein [Postia placenta Mad-698-R]
gi|220729496|gb|EED83369.1| predicted protein [Postia placenta Mad-698-R]
Length = 865
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 83/174 (47%), Gaps = 9/174 (5%)
Query: 530 RSRQRFIVQGLVVVAKNP--CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECS 587
RSR + L+ +P L G+V L AV+ P L H+VDCVVF KG R P+ S
Sbjct: 139 RSRMIILKSRLLFGVCDPYGVLREGEVH-LWAVDHPKLAHLVDCVVFSSKGKRAAPSMSS 197
Query: 588 GSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGI 647
G DLDGD + V WD +L+P + Y PA ++ V D+ ++F Y +L
Sbjct: 198 GGDLDGDRFLVMWDPDLVPKKVAESYTY-PAPKERVGTQVTRADLAKHFAAYNTM-ALAK 255
Query: 648 IANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPD 701
I H + P+ A + C +L S AVD G P +IP L PD
Sbjct: 256 ITALHARWVRCSPKGAMGDECQELNALHSQAVD----GAPIKIPERLLSPPDPD 305
>gi|242048812|ref|XP_002462152.1| hypothetical protein SORBIDRAFT_02g020722 [Sorghum bicolor]
gi|241925529|gb|EER98673.1| hypothetical protein SORBIDRAFT_02g020722 [Sorghum bicolor]
Length = 88
Score = 82.4 bits (202), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/82 (46%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNY-IVNDSLGIIANAHTVFADREPRK 662
+IP + D PMDYT + +DH V +E+++++F +Y + ND+LG+I+ H + AD P K
Sbjct: 7 MIPEKVDAPMDYTATRPCIMDHAVTLEEIQKHFVSYYMTNDTLGVISIVHLIHADHNPLK 66
Query: 663 ARSEPCLQLAEKFSIAVDFPKT 684
A S CLQLA S+AVDF KT
Sbjct: 67 AHSPECLQLAALHSMAVDFAKT 88
>gi|397594531|gb|EJK56264.1| hypothetical protein THAOC_23889, partial [Thalassiosira oceanica]
Length = 225
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 77/142 (54%), Gaps = 4/142 (2%)
Query: 587 SGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSM-QLDHDVQIEDVEEYFTNYIVNDSL 645
SGSDLDGD++ V WD+ L Q PMDY+P ++ Q + + +F + ND+L
Sbjct: 2 SGSDLDGDLFAVTWDERLFLRQSLDPMDYSPPPTLGQETPPINDASLLAHFVGHAKNDNL 61
Query: 646 GIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEY---PDF 702
G I+ A + A C++LA+ SIAVDFPK+G+PA +P L +K +
Sbjct: 62 GRISMLWLDHAVTKGGGAGCHECVRLAKLASIAVDFPKSGIPATLPDDLKIKSTVPRAHW 121
Query: 703 MEKPDKPTYESQNVIGKLFRAV 724
E + ++ +++G+L+ V
Sbjct: 122 RELKNNTSFHCNSILGRLYDMV 143
>gi|378728492|gb|EHY54951.1| RNA-directed RNA polymerase [Exophiala dermatitidis NIH/UT8656]
Length = 1308
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 145/362 (40%), Gaps = 50/362 (13%)
Query: 281 SFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPS 340
S SK T +V +++ E + + V +DG +S A+ + +CG + PPS
Sbjct: 553 SIGLSKTTPAVVLEQNEFL---YLRDAPGSVVMNDGCALMSYNLAKNIWQRCGGQGPPPS 609
Query: 341 AFQIRYGGYKGVVAAD---------------PTSSKKLSLRDSMRKY---ESELTKLDVL 382
A Q R G KG+ D S +L ++ R ES+ T +
Sbjct: 610 AVQGRISGAKGLWLVDYHDSFADVSQRGFWIQVSDSQLKIKPHPRDRSADESQRTFEVLK 669
Query: 383 AWSKYQPCFLNRQLISLLSTLGI----WDEIFEKKQREAVRQLDAILTDPLKAQEALE-- 436
+ + + LN QLI++L G+ ++ E + L + DP + ++
Sbjct: 670 SAGECKEAHLNIQLITILEDRGVPRAALRKLLEDDTKSYFESLKEAMEDPKALRAWMQEH 729
Query: 437 -LMSPGENTNIL-----------KELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 484
L S E T L K LL G+ P L + F + + I
Sbjct: 730 GLASRTEVTRFLGSFPLDRRDQMKYLLESGFDPTECARLKDLAAGFLQEYMTNYVERLWI 789
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL-VVV 543
+P + D L GQVF+ + Y + G +++GL V+V
Sbjct: 790 NVPCSTVVFCAPDPLGVLEEGQVFINFTSPVYDPVKGYHDT----------VLEGLDVLV 839
Query: 544 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
A+NP D+++ +AV LH + ++FP KG +P + SG D DGD V WD +
Sbjct: 840 ARNPAYLASDMQLCQAVYKHELHLYKNVILFPVKGKQPLASLLSGGDYDGDTVTVIWDPD 899
Query: 604 LI 605
++
Sbjct: 900 IV 901
>gi|46124253|ref|XP_386680.1| hypothetical protein FG06504.1 [Gibberella zeae PH-1]
Length = 1372
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 133/325 (40%), Gaps = 47/325 (14%)
Query: 315 DGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV-----VAADPTSSKKLSLRDSM 369
DGI ++S AR+V+ GL + P AFQ R G KG+ + S
Sbjct: 694 DGIARMSRGLARRVSIHLGLLETP-CAFQARIGSAKGMWIVDVEDDGLDDDVWIETYPSQ 752
Query: 370 RKYESELTKL-----DVLAWSK-YQPCFLNRQLISLLSTLG---------IWDEIFEKKQ 414
RK+E E + +V WS+ + LN Q I +L I + + Q
Sbjct: 753 RKWECEFEDVHHRTFEVREWSRELKSASLNTQFIPVLEAQAPNPNSMRNVIANHLANGLQ 812
Query: 415 REAVRQLDAILTDPLK----AQEALELMS----------PGENTNILKELLICGYKPDAE 460
+ QL A +T P + S P + +I+ +L G+
Sbjct: 813 DDIGGQL-AAMTHPTSLRGWTHRGFDRSSLGRVPFVGGLPDHDDDIVSFMLDAGFDATKC 871
Query: 461 PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLH 520
FL ++ + + +L+ K I IP +D T TL G+V Q++ + Q
Sbjct: 872 RFLRDLVWNNQKRQAEQLKAKMNIKIPRSAYAFMVVDFTGTLEEGEV--QLAFSSKFQAD 929
Query: 521 GESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 580
GES + ++VA+ P DV+ ++AV P L + D +VF KG
Sbjct: 930 GESDTL---------LDDIDILVARAPAHFVSDVQKVRAVFRPNLKRLKDVIVFSSKGKS 980
Query: 581 PHPNECSGSDLDGDIYFVCWDDELI 605
P + SG D DGD +VCWD +++
Sbjct: 981 PLADMLSGGDYDGDQAWVCWDPDIV 1005
>gi|358369575|dbj|GAA86189.1| RNA-directed RNA polymerase [Aspergillus kawachii IFO 4308]
Length = 1306
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 112/471 (23%), Positives = 187/471 (39%), Gaps = 75/471 (15%)
Query: 273 KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC 332
K R + S + T+ +H ++ +PDV +K V +DG +S A ++
Sbjct: 593 KLFQRFSLALSKTYATVVLHPRQVLPLPDV------SKPVMNDGCALMSRSLANQICDSL 646
Query: 333 GLKDNPPSAFQIRYGGYKGV---------VAAD-----PTSSKKLSLRDSMRKYES---- 374
GL PSAFQ R G KG+ V AD S +L +R +++
Sbjct: 647 GLTGYTPSAFQGRIAGAKGLWMVDKHRSHVTADDDVWIQISDSQLKIRPHPHEWDGSVDD 706
Query: 375 ELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 433
E +V+ WSK P QL+++L G R ++ L D L++
Sbjct: 707 EKLTFEVVKWSKPLHPVNQTIQLLNILDHGGHIRGHLADLTRLGIQSLYQEFADVLESDS 766
Query: 434 ALELMSPGENTNILKELLICGYKPDAEP-FLSMMLQTFRASKLLE------LRTKTRIFI 486
A +L L+ +P + F + +T+R + +R F
Sbjct: 767 A-----------VLCRSLVQKIRPSGDDGFGRVSQRTWRFENWMSNDAEFIIRLTEAGFC 815
Query: 487 PNG----RSMMG-CLDETRTLNYGQVFVQISGAGYR-------------QLH-GESSLFS 527
P R +G CL E + ++ +++ + Y ++H G S+++
Sbjct: 816 PRSFHFLRKRLGKCLRELLKRHVDELRIEVPLSTYAFCIADPYGVLKEDEVHFGFSNVWR 875
Query: 528 SSRSR-QRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNE 585
+ + + ++ G+ V+V + P P D++ AV L H D +VFP G P +
Sbjct: 876 DGKGQFEDILLDGIDVLVGRLPAHLPSDIQRRTAVWKQELRHFKDVIVFPSVGNIPLAHM 935
Query: 586 CSGSDLDGDIYFVCWDDELI--------PPQQDPPMDYTPAQSMQLDHDVQIED--VEEY 635
SG D DGD ++CWD ++ P + PP Y + D+Q D ++
Sbjct: 936 LSGGDYDGDTPWICWDQNIVRNFYNSGLPDTEFPPEHYGLTKYAVDMKDIQSMDEFLQSS 995
Query: 636 FTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGV 686
FT + +LG H + A E S+ +LA S VD K GV
Sbjct: 996 FTFNLTLSNLGRCTVEHEMIAYDE-ESIDSDKAKELACLLSHLVDGRKAGV 1045
>gi|330915603|ref|XP_003297095.1| hypothetical protein PTT_07392 [Pyrenophora teres f. teres 0-1]
gi|311330417|gb|EFQ94809.1| hypothetical protein PTT_07392 [Pyrenophora teres f. teres 0-1]
Length = 1415
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 16/176 (9%)
Query: 447 LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQ 506
+K LL G+ P L+ LQ F +K + +K R+ + + G +D L G+
Sbjct: 914 VKLLLESGFSPAKFSPLAQSLQRFIQAKQILQESKLRVPLAKSTFLFGIVDPLGVLEPGE 973
Query: 507 VFVQISGAGYRQLHGESSLFSSSRSRQRFIV--QGLVVVAKNPCLHPGDVRVLKAVNVPA 564
+ VQ S S F+ + ++++ V+VA+ P D++ ++ V
Sbjct: 974 IQVQFS-----------SSFADDTTDEKYLCLRDMEVLVARQPACRRSDIQKVRTVIRSE 1022
Query: 565 LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQS 620
L H+VD VVFP KG P + G D DGDI+++CW+ +L+ P + P P QS
Sbjct: 1023 LSHLVDVVVFPSKGRYPLAGKLQGGDYDGDIFWICWEPQLVQPFLNAP---APVQS 1075
>gi|407919378|gb|EKG12628.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina phaseolina
MS6]
Length = 1485
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 148/351 (42%), Gaps = 59/351 (16%)
Query: 308 KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVV----AADPTSSKKL 363
+ K V +DG +S ARK+ + + PS FQ R GG KG+ + D T S+ L
Sbjct: 718 RPKRVMNDGCSLISVGAARKLWEQTNRTEPLPSTFQGRIGGAKGMWMISDSPDTTDSRHL 777
Query: 364 ----SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLG--------------- 404
+ DS K+++ + + S+Y P L L S T G
Sbjct: 778 KVWIQISDSQLKFKAHS---EDQSESEYDPHRLTFDLHSTTGTAGESSVYLSFFPILENR 834
Query: 405 -----IWDEIFEKK-QREAVRQLDAI-----LTDPLKAQEAL-ELMSPGENTNIL----- 447
++FE RE + L ++ L L Q +L E + EN
Sbjct: 835 GVSAKALQKLFESHLDREREKILASVTNRVGLRTWLNQQNSLAEERNRDENMTWQASMPL 894
Query: 448 ----KELLIC--GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRT 501
K +L+ G+ + +L+ + A L LR R+ +P + G D
Sbjct: 895 QLHEKAILLAESGFDISCD-YLADVAHRLLAKSLRLLRQNIRVPLPRCTYIKGVADPLGV 953
Query: 502 LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 561
L G++ V + ++ G+ + ++R+ V+VA+NP L D++ +++
Sbjct: 954 LKPGEIHVHFTRRFVDEVSGDCLSYLNNRN---------VLVARNPALRASDIQKVRSTF 1004
Query: 562 VPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPP 612
L H+ D VVFP +G P + G D DGD +++CW+ E++ P ++ P
Sbjct: 1005 NLRLGHLKDVVVFPTRGTFPLAGKLQGGDYDGDTFWICWEPEMVEPFKNAP 1055
>gi|115435090|ref|NP_001042303.1| Os01g0197900 [Oryza sativa Japonica Group]
gi|56201770|dbj|BAD73220.1| unknown protein [Oryza sativa Japonica Group]
gi|56201877|dbj|BAD73327.1| unknown protein [Oryza sativa Japonica Group]
gi|113531834|dbj|BAF04217.1| Os01g0197900 [Oryza sativa Japonica Group]
Length = 387
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 27/219 (12%)
Query: 539 GLVVVAKNPCLHPGDVRVLKAVNVPALH-----HMVDCVVFPQKGMRPHPNECSGSDLDG 593
G V+V K+P LH GD+ VLKA + L + ++FP G R +E + SD DG
Sbjct: 26 GDVLVYKHPGLHFGDIHVLKATYIRDLEKEYVGYAKYAILFPISGPRSLADEMANSDFDG 85
Query: 594 DIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEE-----------YFTNYIVN 642
DIY+V + +L+ P + A + + +D E T + +
Sbjct: 86 DIYWVSKNPKLLE-HFKPSEPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTPS 144
Query: 643 DSLGIIANAHTVFADRE--------PRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHL 694
+LG A++ + DR +K E L+L + + +A+D PKTG IP L
Sbjct: 145 FALGTAADSWLAYMDRLLTDSLDEIEKKLIEEKMLKLVDLYYLALDAPKTGNKVNIPSDL 204
Query: 695 YVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSC 733
VK+YP FM + +Y S +++G+++ +D+ SC
Sbjct: 205 MVKQYPHFMGR--SFSYHSSSILGQIYDKAEDVESLRSC 241
>gi|46117554|ref|XP_384795.1| hypothetical protein FG04619.1 [Gibberella zeae PH-1]
Length = 1079
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 109/434 (25%), Positives = 176/434 (40%), Gaps = 79/434 (18%)
Query: 309 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAAD---PTSSKKLSL 365
T V +DGIG+VS RKV + L D P+A Q R G KG+ D S L
Sbjct: 393 TGNVMNDGIGRVSLALMRKVQNALQL-DYLPAAIQGRIGSAKGLWVLDIGTQPSEIWLET 451
Query: 366 RDSMRKY-----ESELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREA-- 417
+S RK+ + E L+VL+ S + LN Q IS+L + + +++ A
Sbjct: 452 YESQRKWNCDWKDPEHRTLEVLSQSSDLKTATLNHQFISILESRSV-----DRRNTRAAM 506
Query: 418 VRQLDAILTDPL-KAQEAL---ELMS-----------------------PGENTNILKEL 450
V+ + L L A+E++ EL P + L
Sbjct: 507 VKHMKINLQTSLDHAKESMKQPELFRKWIHETSYASYGGRNESWFIGGLPKSWAEQMSFL 566
Query: 451 LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQ 510
G++P +L + S+ + K RI I + +D F
Sbjct: 567 SDGGFEPLHLRYLHNLTTNHMESQWKNTKEKMRIEISQSTWALMVVD----------FQG 616
Query: 511 ISGAGYRQLHGESSLFSSSRS---RQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALH 566
+ G QL FSS + +R+ ++G V+VA+ P P D++ +KAV P L
Sbjct: 617 VLGPDEVQL-----CFSSPFNDGFEKRYDLEGFDVIVARCPAHLPSDIQKVKAVFKPELR 671
Query: 567 HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLD-H 625
H+ D VVFP G P + SG D DGD ++CWD +++ ++ + P+ + + +
Sbjct: 672 HLKDVVVFPFVGQEPLAGKLSGGDYDGDKAWICWDADIVDNFRNSEVPQKPSFNGYFEAN 731
Query: 626 DVQIED--------------VEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQL 671
D +E +EE FT ++ +G+ N A + + +
Sbjct: 732 DHTVESLILKHGKSHYLDYLLEEAFTFHLTPKLVGLCTNYKERLA-YDKNSIEDPSVINM 790
Query: 672 AEKFSIAVDFPKTG 685
+ S VD PK+G
Sbjct: 791 SWLLSALVDQPKSG 804
>gi|367049126|ref|XP_003654942.1| hypothetical protein THITE_2079458 [Thielavia terrestris NRRL 8126]
gi|347002206|gb|AEO68606.1| hypothetical protein THITE_2079458 [Thielavia terrestris NRRL 8126]
Length = 1373
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 103/400 (25%), Positives = 170/400 (42%), Gaps = 64/400 (16%)
Query: 250 RYGLTAAEIREWMGNFR--EIRNVAKYAARLGQSFSSSKETLSVHMDEI-EIIPDVKIEI 306
R + +E+ +W+ E + K +R+ S + T++ ++I D+
Sbjct: 603 RTEIRVSEMLDWLLQLEQNEYQPHLKLFSRIQLGLSKTFPTVTFEPNQIRHRTDDILSPA 662
Query: 307 GKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVV---AADPTSSKKL 363
GK + +DGIG++S ARK+ GL D P SA Q R G KG+ AD +
Sbjct: 663 GK---IMNDGIGRMSRSVARKIRDALGLSDIP-SAIQGRMGSAKGMWLMDVADAGDDDWI 718
Query: 364 SLRDSMRKYESELT-----KLDVLAWS-KYQPCFLNRQLISLLSTLGIWDEIFEKKQREA 417
S RK++ + L++ + S + +P LN Q + +L E K +
Sbjct: 719 ETYPSQRKWKCDDADALHRTLEIRSVSTELKPAALNLQFLPVL-------EDRAKDKARM 771
Query: 418 VRQLDAILTDPLKAQ---EALELMSP-------GENTNILKELLICGYKP-------DAE 460
R + A L + LK Q + + P E TN E + G P +
Sbjct: 772 RRAIAARLMNDLKKQFDSQKAAVERPLQFRQWVNECTNSRSERVRHGQVPFLGGLPENKG 831
Query: 461 PFLSMMLQTF--RASKLLE-------------LRTKTRIFIPNGRSMMGCLDETRTLNYG 505
LS +L + R K ++ LRTK I + M +D L
Sbjct: 832 EVLSFLLNSGFDRRQKYIQDLAFDLQKQRCEVLRTKLNIHVGRSAYMFMVVDFWGVLEEN 891
Query: 506 QVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 565
+V V S + +R +++ + V+VA++P P D++ ++AV P L
Sbjct: 892 EVHVGFS-SKFRDDVDDTTYM--------LLTDCDVLVARSPAHFPSDIQKVRAVFKPQL 942
Query: 566 HHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
H + D +VFP KG P ++ SG D DGD+ +VCWD +++
Sbjct: 943 HALKDVIVFPAKGDIPLADKLSGGDYDGDMAWVCWDPDIV 982
>gi|297832166|ref|XP_002883965.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329805|gb|EFH60224.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 934
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 24/206 (11%)
Query: 543 VAKNPCLHPGDVRVLKAVNVPALHHMVD----CVVFPQKGMRPHPNECSGSDLDGDIYFV 598
V +NP LH GD+ VLKA V AL V V FPQKG R +E +G D DGD+YF+
Sbjct: 584 VYRNPGLHFGDIHVLKATYVKALEDYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGDMYFI 643
Query: 599 CWDDELIP---------PQQDPPMDYTPAQSMQLDHDVQIEDVEEYF--TNYIVNDSLGI 647
+ +L+ P Y+ + +L + E++ + F + D +G+
Sbjct: 644 SRNPKLLEYFKPSEPWVSSSKPSKIYSGRKPSELSEEELEEELFKMFLKARFCKRDVIGM 703
Query: 648 IANAHTVFAD---------REPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKE 698
A+ D + + R + L+L + + A+D PK G ++PP L +K
Sbjct: 704 AADCWLGIMDPLLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKN 763
Query: 699 YPDFMEKPDKPTYESQNVIGKLFRAV 724
+P +ME+ K + S +++G +F V
Sbjct: 764 FPHYMERDPKRDFRSTSILGLIFDTV 789
>gi|350635543|gb|EHA23904.1| hypothetical protein ASPNIDRAFT_40039 [Aspergillus niger ATCC 1015]
Length = 1307
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/494 (23%), Positives = 191/494 (38%), Gaps = 89/494 (18%)
Query: 273 KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC 332
K R + S + T+ + ++ +PDV +K V +DG +S A K+
Sbjct: 594 KLFQRFSLALSKTYATVVLQPRQVLPLPDV------SKPVMNDGCALMSRGLANKICDSL 647
Query: 333 GLKDNPPSAFQIRYGGYKGVVAADPTSSKK--------LSLRDSMRK-----------YE 373
GL PSAFQ R G KG+ D S + + DS K +
Sbjct: 648 GLTGYTPSAFQGRIAGAKGLWMVDKHQSHVSADDNDVWIQISDSQLKIKPHPCQWDESVD 707
Query: 374 SELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 432
E +V+ WSK P LN QL+S+L G E R ++ + + L++
Sbjct: 708 DEKLTFEVVKWSKPLHPVNLNIQLLSILDHGGHIKEHLADLTRLGIQSVYQEFANVLQSD 767
Query: 433 EALELMSPGENTNILKELLICGYKPDAEP-FLSMMLQTFRASKLLE------LRTKTRIF 485
A +L L+ +P + F + +T+R + +R F
Sbjct: 768 SA-----------VLCRSLVQKIRPSGDDGFGPVSQRTWRFENWMSSDAEFIIRLTEAGF 816
Query: 486 IPNG----RSMMG-CLDETRTLNYGQVFVQISGAGYR-------------QLH-GESSLF 526
P R +G CL E + ++ +++ + Y ++H G S+ +
Sbjct: 817 CPRSFYFLRKRLGKCLRELLKRHVDELRIEVPLSTYAFCIADPYGVLKEDEVHFGFSNNW 876
Query: 527 SSSRSR-QRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPN 584
+ + + ++ G+ V+V + P P D++ KAV L H D +VFP G P +
Sbjct: 877 RDGKGQFEDILLDGIDVLVGRLPAHLPSDIQRRKAVWKSELRHFKDVIVFPSVGSIPLAH 936
Query: 585 ECSGSDLDGDIYFVCWDDELI--------PPQQDPPMDYTPAQSMQLDHDVQIED--VEE 634
SG D DGD ++CWD ++ P + P Y + D+Q D ++
Sbjct: 937 MLSGGDYDGDTPWICWDQNIVQNFNNSKLPDIEFPAEHYGLTKYAVGMKDIQSMDEFLQS 996
Query: 635 YFTNYIVNDSLGIIANAHTVFA---DREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIP 691
FT + +LG H A + KA+ CL S VD K GV
Sbjct: 997 SFTFNLTLSNLGRCTVEHEKIAYDDSIDSDKAKELACL-----LSHLVDGRKAGV----- 1046
Query: 692 PHLYVKEYPDFMEK 705
HL K + + +K
Sbjct: 1047 -HLSEKAWQQYRKK 1059
>gi|222617920|gb|EEE54052.1| hypothetical protein OsJ_00745 [Oryza sativa Japonica Group]
Length = 1243
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 95/366 (25%), Positives = 159/366 (43%), Gaps = 53/366 (14%)
Query: 393 NRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL-MSPGENTNILKELL 451
+R LI+LL G+ +E F + + A+ + D ++AL + S + + + +
Sbjct: 760 SRFLITLLCYGGVPEEYFLELLQSAIEGAENACYD---YEDALRIAFSYADMEDSMSARM 816
Query: 452 ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI 511
I P E +L L F A + + + +I I +M D T TL +V V +
Sbjct: 817 ILSGIPLEESYLQHRLD-FMAQQERKGIKQGKIPIDECYYLMDTTDPTGTLRPNEVCVIL 875
Query: 512 SGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH----- 566
E+ FS G V+V K+P LH GD+ VLKA + L
Sbjct: 876 ----------ENGQFS-----------GDVLVYKHPGLHFGDIHVLKATYIRDLEKEYVG 914
Query: 567 HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHD 626
+ ++FP G R +E + SD DGDIY+V + +L+ P + A +
Sbjct: 915 YAKYAILFPISGPRSLADEMANSDFDGDIYWVSKNPKLLE-HFKPSEPWVQAIKPKKTKQ 973
Query: 627 VQIEDVEE-----------YFTNYIVNDSLGIIANAHTVFADRE--------PRKARSEP 667
+ +D E T + + +LG A++ + DR +K E
Sbjct: 974 KKPQDCNESKLERLLFHEFLKTRFTPSFALGTAADSWLAYMDRLLTDSLDEIEKKLIEEK 1033
Query: 668 CLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDI 727
L+L + + +A+D PKTG IP L VK+YP FM + +Y S +++G+++ +D+
Sbjct: 1034 MLKLVDLYYLALDAPKTGNKVNIPSDLMVKQYPHFMGR--SFSYHSSSILGQIYDKAEDV 1091
Query: 728 APHTSC 733
SC
Sbjct: 1092 ESLRSC 1097
>gi|212534570|ref|XP_002147441.1| RNA-directed RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
gi|210069840|gb|EEA23930.1| RNA-directed RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
Length = 1361
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 111/465 (23%), Positives = 183/465 (39%), Gaps = 67/465 (14%)
Query: 273 KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC 332
K R+G + S + T+ + + +K+ K V +DG +S AR + ++
Sbjct: 636 KLFNRIGLALSKTWATVVIQPHQF-----LKLSDPLGKPVMNDGCALMSRPLARAICAEL 690
Query: 333 GLKDNPPSAFQIRYGGYKGVVAAD-----------PTSSKKLSLR----DSMRKYESELT 377
G+ PS FQ R G KG+ D S +L ++ D + E
Sbjct: 691 GIDGITPSTFQGRIAGAKGLWMVDRDLDDDKGFWIQISDSQLKVKPHPCDFFGHVDEEKI 750
Query: 378 KLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE 436
+V +WSK + LN QL+ +L+ G + REA+R + +E
Sbjct: 751 TFEVASWSKPLRSSELNTQLLEVLNNRGQVRKRVADIAREAIRDI---------YKEFEN 801
Query: 437 LMSPGENTNILKELLICGYKPDAEPFLS---------MMLQTFRAS-KLLELRTKTRIFI 486
+M N+ L LI +P A+ S + QT + + LE R F
Sbjct: 802 VME--RNSIPLARALIQKIRPTADDGYSRTNIRRIDQWLSQTIESVIRFLEAGFSPRDFP 859
Query: 487 PNGRSMMGCLDET--RTLNYGQVFVQISGAGY-----------RQLH-GESSLFSSSRSR 532
P M CL++T R +N + + +S Y ++H S +
Sbjct: 860 PLRERMRICLNDTLNRYVNELHIPIPLSTYAYCIADPYGVLEENEVHFAFSGQWRDCSYF 919
Query: 533 QRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDL 591
+V G V+V + P P D++ +AV L H D +VF +G P + SG D
Sbjct: 920 DDAMVDGADVLVGRTPAHCPWDIQRRRAVWKSELRHFKDVIVFSTRGTTPLASLLSGGDY 979
Query: 592 DGDIYFVCWDDELIPPQQD--PPMDYTPAQSMQLDHDVQ----IEDVEEYFTNY----IV 641
DGD ++CWD ++ + PP++ + + L Q + V ++ N +
Sbjct: 980 DGDRPWICWDQGIVETFTNTFPPLEESGPEHFGLVKHAQPMSTVGSVGDFLRNAFKFNLA 1039
Query: 642 NDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGV 686
+LG H + E S L+LA S VD K+G+
Sbjct: 1040 MSNLGRCTVEHEKLSYDEKEGISSPLSLELATLLSHLVDSKKSGL 1084
>gi|388853529|emb|CCF52928.1| uncharacterized protein [Ustilago hordei]
Length = 1363
Score = 80.1 bits (196), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 8/167 (4%)
Query: 449 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 508
E+L+ G+ P + P+L+ +L + + + + I +P M D T TL G++
Sbjct: 778 EMLLVGFHPKSCPYLAELLVEIADNAMKRIIKRFTIPVPRSAEAMVMPDPTGTLEEGEIQ 837
Query: 509 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 568
+ SG + L +R + + +G V+V ++PCL P D+R ++AV P L
Sbjct: 838 FRFSG--------DRLLDPETRLKLNHVPEGDVLVTRHPCLLPTDIRKVRAVVRPELSTY 889
Query: 569 VDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDY 615
D VVF KG P + G D DGD V W+ +L+ P Q+ Y
Sbjct: 890 EDVVVFSIKGQGPLASLLGGGDHDGDTIRVFWEPKLVEPFQNSDTKY 936
Score = 46.2 bits (108), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 26/173 (15%)
Query: 271 VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE---IGKTKYVFSDGIGKVSAEFARK 327
+ KY R+ S+S + +D+I PDV + + + +DG G VS A+
Sbjct: 519 LGKYIQRVQLGLSTS--VPASVIDKITYEPDVFGDPDPVTGKRVEMTDGAGVVSLAVAKD 576
Query: 328 VASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL---------SLRDSMRKYE----- 373
+A G ++ P AFQ R G KGV +P + L +RDS +K
Sbjct: 577 IAEHLGY-ESVPCAFQGRVAGSKGVWYIEPRPERSLPGEKPTRWIRVRDSQKKINYADDK 635
Query: 374 ----SELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL 421
S+L +D+L S+ + P L++Q+I ++ G+ FE Q +R +
Sbjct: 636 PLDPSQLV-IDLLGPSRTFAPSTLSKQIIMVIQANGVPTSTFEGMQEAELRAI 687
>gi|255956165|ref|XP_002568835.1| Pc21g18410 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590546|emb|CAP96738.1| Pc21g18410 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1430
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 164/390 (42%), Gaps = 27/390 (6%)
Query: 281 SFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPS 340
S SK +V + +++ ++ T+ V +DG +S A ++ + G+ PS
Sbjct: 759 SLGLSKTFATVKLKPTQVL---RLRDDPTRPVMNDGCALMSRTLANQICDQLGITTATPS 815
Query: 341 AFQIRYGGYKGVVAADPTSSKKLSLRDSMRKY----ESELTKLDVLAWSK-YQPCFLNRQ 395
FQ R G KG+ S +L + +++ + E +V+ W+K P LN Q
Sbjct: 816 CFQGRIAGAKGLWMIQ-ISDSQLKIHPHPQEWVGPVDEEKLTFEVVNWAKQLHPVDLNIQ 874
Query: 396 LISLLSTLGIWDEIFEKKQREAVRQL-DAIL-----TDPLKAQEALELMSP-GENTNILK 448
L+++L G E K R+ V+ L D L P+ + L+ + P GE+
Sbjct: 875 LLAILEYGGNVKEYIAKLTRDGVQSLYDDFLEVLRSNSPVVCRALLQKLRPSGEDGTGKA 934
Query: 449 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQ 506
L DAE + F LR K R ++ R++ + Y
Sbjct: 935 RRLEQWVTNDAESIIHFSEAGFAPRDFFPLRMKIRQYLTWLLERNVEELKIQVPLSTYAY 994
Query: 507 VFVQISGA-GYRQLH-GESSLFSSSRSR-QRFIVQGL-VVVAKNPCLHPGDVRVLKAVNV 562
G G ++H G S+ + + + + ++ G+ V+V + P P D++ +AV
Sbjct: 995 CIADPYGVLGPDEVHFGFSNNWRDPQGQFEDNLLDGVDVLVGRLPAHLPSDIQRRRAVWK 1054
Query: 563 PALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPM---DYTPAQ 619
L H + +VFP G P SG D DGD ++CWD ++ Q+ PM +Y+
Sbjct: 1055 SELRHFKNVIVFPTTGEFPLAGMLSGGDYDGDTPWICWDPMIVERFQNSPMPTDEYSAEH 1114
Query: 620 SMQLDHDVQIEDVE--EYFTNYIVNDSLGI 647
H V + +E E F + + +L +
Sbjct: 1115 YGLTKHSVPMASLESTEDFLESVFDFNLNV 1144
>gi|389627942|ref|XP_003711624.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
gi|351643956|gb|EHA51817.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
Length = 1261
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 92/420 (21%), Positives = 170/420 (40%), Gaps = 65/420 (15%)
Query: 243 SAWMFASRYGLTAAEIREWMGNFREIRNV----AKYAARLGQSFSSSKET-----LSVHM 293
S ++F +R L + W+ ++N K +R+ S + T L +H
Sbjct: 509 SGYLF-TRTALPVHSMLNWLLQLDLVKNQRQPWPKLFSRIQLGLSRTHPTVVFAPLEIHA 567
Query: 294 DEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVV 353
+E +++ V +DGIG +S AR+V G++D P A Q R G KG+
Sbjct: 568 EEHDLM-------SPAGNVMNDGIGLMSRSVAREVQQILGIQD-LPCAVQGRLGSAKGMW 619
Query: 354 AADP---TSSKKLSLRDSMRKY-----ESELTKLDVLAWSK-YQPCFLNRQLISLLS--- 401
DP + + + S RK+ +S L++ +K + LN Q + +L
Sbjct: 620 IIDPFDQSDDRWIKTYPSQRKWNCTSADSHHRTLEIKTHAKPLRSASLNLQFLPVLHDRS 679
Query: 402 --TLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMS-------------------- 439
G+ D I E + +L+++ Q+ L+ +
Sbjct: 680 KHKHGMRDSIGELLRTSLRTELESVQVALRSPQQFLQWVHENSNHRQGLGNTSFEVPRLG 739
Query: 440 --PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLD 497
P + +++ E++ G+ P + +L + + K LR K I + + +D
Sbjct: 740 GLPERDEDVMAEMVRAGFNPRGQKYLQDIAWNIQKQKCETLREKLNIKVGMSTYALMVVD 799
Query: 498 ETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 557
+ G+V + S F+ + V+VA++P + D++ +
Sbjct: 800 FWGVVPEGEVHLCFS-----------EKFTCDGFSGTLLNDQEVLVARSPAHYVSDIQKV 848
Query: 558 KAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTP 617
KAV P L + D +VF + G + SG D DGDI +VCWD +++ Q+ + +P
Sbjct: 849 KAVFRPELKDLKDVIVFSRNGNVALADRLSGGDYDGDIAWVCWDSKIVDNFQNAAVPDSP 908
>gi|343429506|emb|CBQ73079.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 1287
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 116/261 (44%), Gaps = 35/261 (13%)
Query: 449 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM--MGCLDETRTLNYGQ 506
E+L+ G+ P+ +L+ +L A L + R IP RS M D T TL G+
Sbjct: 730 EMLLSGFHPEKCAYLADLLVEIAA--LAMSKVIKRFAIPVARSAEAMVIPDPTGTLEEGE 787
Query: 507 VFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH 566
+ + S ++ + +R R + +G V+V ++PCL P D+R ++AV P L
Sbjct: 788 IQFRFSS--------DNIVDPDTRLRLTHVPEGQVLVTRHPCLLPTDIRKVRAVVRPELS 839
Query: 567 HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDY----------- 615
D VVF KG RP + SG D DGD+ V W+ +L+ P ++ + +
Sbjct: 840 LYKDVVVFSTKGKRPLASLLSGGDYDGDLIRVFWEPKLVEPFENADVRFADCPFNVDDVF 899
Query: 616 -----TPAQSMQLDHDVQIEDVEEYFTNYIVNDSL-----GIIANAHTVFADREPRKARS 665
T A+ + D ++ + +V + G+ H A + RS
Sbjct: 900 TRNEKTVAEFVAEHKDKHKDERDRELIKELVVGAFDPQVRGLYGTMHLYAAWQ--FGTRS 957
Query: 666 EPCLQLAEKFSIAVDFPKTGV 686
++LA KF +D PKTG+
Sbjct: 958 AEAVELAHKFCHCMDGPKTGL 978
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 22/171 (12%)
Query: 271 VAKYAAR--LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV 328
+ KY R LG S S + ++ D E GK++ + +DG G VS AR +
Sbjct: 470 LGKYVQRVQLGLSTSVPASVIDKMTYVADVFGDADPETGKSQEM-TDGAGCVSLAVARDI 528
Query: 329 ASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL---------SLRDSMRKYES----- 374
A G D+ PSAFQ R G KGV DP + + L +RDS K +
Sbjct: 529 AQHLGY-DSIPSAFQGRVAGAKGVWYIDPAAERTLPNEKPVRWIEIRDSQNKIQYPQDKP 587
Query: 375 -ELTKL--DVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL 421
+L++L D+L S+ + P L+RQ+I +L + G+ F QR ++ +
Sbjct: 588 LDLSQLVVDLLGPSRTFAPSTLSRQIILVLQSNGVPISTFADMQRAELQAI 638
>gi|440464051|gb|ELQ33552.1| RNA-dependent RNA polymerase [Magnaporthe oryzae Y34]
gi|440477644|gb|ELQ58660.1| RNA-dependent RNA polymerase [Magnaporthe oryzae P131]
Length = 1738
Score = 78.6 bits (192), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 86/381 (22%), Positives = 155/381 (40%), Gaps = 60/381 (15%)
Query: 278 LGQSFSSSKET-----LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC 332
LG S + T L +H +E +++ V +DGIG +S AR+V
Sbjct: 552 LGSGLSRTHPTVVFAPLEIHAEEHDLM-------SPAGNVMNDGIGLMSRSVAREVQQIL 604
Query: 333 GLKDNPPSAFQIRYGGYKGVVAADP---TSSKKLSLRDSMRKY-----ESELTKLDVLAW 384
G++D P A Q R G KG+ DP + + + S RK+ +S L++
Sbjct: 605 GIQD-LPCAVQGRLGSAKGMWIIDPFDQSDDRWIKTYPSQRKWNCTSADSHHRTLEIKTH 663
Query: 385 SK-YQPCFLNRQLISLLS-----TLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELM 438
+K + LN Q + +L G+ D I E + +L+++ Q+ L+ +
Sbjct: 664 AKPLRSASLNLQFLPVLHDRSKHKHGMRDSIGELLRTSLRTELESVQVALRSPQQFLQWV 723
Query: 439 S----------------------PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLL 476
P + +++ E++ G+ P + +L + + K
Sbjct: 724 HENSNHRQGLGNTSFEVPRLGGLPERDEDVMAEMVRAGFNPRGQKYLQDIAWNIQKQKCE 783
Query: 477 ELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFI 536
LR K I + + +D + G+V + S F+ +
Sbjct: 784 TLREKLNIKVGMSTYALMVVDFWGVVPEGEVHLCFS-----------EKFTCDGFSGTLL 832
Query: 537 VQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIY 596
V+VA++P + D++ +KAV P L + D +VF + G + SG D DGDI
Sbjct: 833 NDQEVLVARSPAHYVSDIQKVKAVFRPELKDLKDVIVFSRNGNVALADRLSGGDYDGDIA 892
Query: 597 FVCWDDELIPPQQDPPMDYTP 617
+VCWD +++ Q+ + +P
Sbjct: 893 WVCWDSKIVDNFQNAAVPDSP 913
>gi|398407389|ref|XP_003855160.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
gi|339475044|gb|EGP90136.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
Length = 1316
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/339 (25%), Positives = 141/339 (41%), Gaps = 54/339 (15%)
Query: 312 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV------------VAADP-- 357
V SDG ++S K+ + G D+ SAFQ R GG KGV V P
Sbjct: 600 VMSDGCAELSRHAYWKICEQLG-GDHTRSAFQARIGGAKGVWYRAAEIDGSFDVGKPPGP 658
Query: 358 ----TSSKKLSLRDSMRKYESELTKLDVLAWSKY-QPCFLNRQLISLLSTLGIWDEIFEK 412
S+ RDS+ + + K +V+ + Y +P L+ + +L G+ ++
Sbjct: 659 HITIVQSQIKVQRDSLEDCDPDQRKFNVVKANSYARPSLLHAGFMPILLDRGVPRQVMLD 718
Query: 413 KQREAVR-QLDA-----ILTDPLKAQEALELMS--------------------PGENTNI 446
R ++ ++DA + DPL + L + P
Sbjct: 719 VARTQIKAEVDACEAAIVSPDPLAFRMWLHSQNELYEERNRTRDGGIDTVAGWPIRREER 778
Query: 447 LKELLICGYKPDAEPFLSM-MLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYG 505
+ LL G+ P P+L+ ++ + + L+ R +I + ++MG D L G
Sbjct: 779 IIRLLESGFVPTQCPYLARDVIDLVKYTFDLKQRN-FKIRLGRSTTLMGIADPKGCLEPG 837
Query: 506 QVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 565
+V V S + E SS + GL VA+NP + D++ ++ V P L
Sbjct: 838 EVHVNFSAPFIDPVTKEQFQNLSSPE----VAFGL--VARNPAMAAWDIQRVRFVYKPEL 891
Query: 566 HHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDEL 604
H+ D VF +G RP ++ G D DGD +++CWD +L
Sbjct: 892 KHLTDLAVFSSRGHRPLASKLQGGDYDGDTFWICWDRKL 930
>gi|224093866|ref|XP_002310026.1| hypothetical protein POPTRDRAFT_562705 [Populus trichocarpa]
gi|222852929|gb|EEE90476.1| hypothetical protein POPTRDRAFT_562705 [Populus trichocarpa]
Length = 406
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 123/283 (43%), Gaps = 42/283 (14%)
Query: 334 LKDNPPSAFQIRYGGYKGVVAADPTSSKKLS-----LRDSMRKYESE--------LTKLD 380
L +PP Q R V +KKL+ +R SM K E++ L+
Sbjct: 134 LHGDPPLLIQFRLFNNGRAVKGTFLVNKKLNHRTLHVRPSMIKVETDPKLSNTFSKNSLE 193
Query: 381 VLAWS-KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMS 439
++ S + + FL++ LI+LLS G+ +E F A+ IL++ KA + L
Sbjct: 194 IVGTSCRPKKTFLSKNLIALLSYGGVPEEFFMGILNNALEDAHGILSNK-KAALRVALNY 252
Query: 440 PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET 499
+ NI+ ++ CG P EP+L L + + + +I +P +MG D T
Sbjct: 253 GDMDDNIVATMIGCGI-PLEEPYLQHHL-SILKKEEKKSLKGGKIPVPESYYLMGTADPT 310
Query: 500 RTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 559
L +V + + Q+ GE V+V +NP LH GD+ +LKA
Sbjct: 311 GLLESDEVCIILDCG---QVSGE------------------VLVYRNPGLHFGDIHILKA 349
Query: 560 VNVPALHHMVD----CVVFPQKGMRPHPNECSGSDLDGDIYFV 598
V L V + FP KG R +E SG D DGD++FV
Sbjct: 350 TYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFV 392
>gi|168064128|ref|XP_001784017.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162664466|gb|EDQ51185.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 1042
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 148/636 (23%), Positives = 249/636 (39%), Gaps = 130/636 (20%)
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESS--------------AWMFASRYGLTAAEIREWMG 263
+R+GIL+G R++ F S E S +F L ++ +
Sbjct: 334 VRDGILVGLRRYRLWTFKDSGKEEFSNRSKPYDKDYQRAVKCIFICTESLADVDLAD--S 391
Query: 264 NFREIRNV----------------AKYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIE 305
NF+ + + +K+A+RL + S S T +++ DEI++ IPD+
Sbjct: 392 NFKYFKTIEAARCHIVHIHTVPTMSKFASRLQLALSKSV-TANLNWDEIKVRQIPDILST 450
Query: 306 IGKTKYVF---SDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVV------AAD 356
F ++G ++S + AR + P+ Q R +KG+
Sbjct: 451 TLDNSGKFMSHTEGTAEISPDVARLIPCSVFKGKGYPTLIQGRLF-WKGMAIKGTWQVNH 509
Query: 357 PTSSKKLSLRDSMRKYESELTKLDVLAWSKYQ-----PCF-------LNRQLISLLSTLG 404
++ R SM K ++ D + ++ C+ L++ LI LLS
Sbjct: 510 QLKGLQILYRPSMVKVTTDAALKDFPTINSFEIVNTNTCYKLKEEAKLSQDLIFLLSVNN 569
Query: 405 IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL--ICGYKPDAEPF 462
+ F + +A+ L + T + Q EL ++ ++ + L I P P
Sbjct: 570 VPASFFLEHVEKALENLHSFFT--TRGQVFRELKRCSQDYDVGDQTLRMIMANIPMNNPQ 627
Query: 463 LSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET--RTLNYGQVFVQISGAGYRQLH 520
+ L+ K+ LR K + +P +MG D T R L +V V +G
Sbjct: 628 MQKNLKKISQDKIALLR-KGCVPLPQSCYLMGTCDPTKERVLKPNEVAVIKNGDK----- 681
Query: 521 GESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMV----DCVVFPQ 576
V G V+V KNP H GDV V AV L+ V + F
Sbjct: 682 ----------------VLGKVLVYKNPGKHWGDVHVFDAVWDERLNPYVGPANQTIFFSV 725
Query: 577 KGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSM--QLDHDVQIEDVEE 634
+G RP +E + SDLDGD Y+VC++ + + +DY ++ + QL V+I V+
Sbjct: 726 RGNRPVVDEIANSDLDGDFYWVCFNTQ----ATNSFLDYFSSKVVFCQL-IGVRIAAVDL 780
Query: 635 YFTNYIVNDS--------------LGIIANAHTVFADR-----------EPRKARSEPCL 669
F + D + + A DR E + SE L
Sbjct: 781 SFHSKPTLDENRGEDKLPGWECKPMPLSATYWIAHMDRYLTLKYADEYSEELELLSETIL 840
Query: 670 QLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPT----YESQNVIGKLFRAVK 725
+L + F A+D KTG ++ L K YP FM K ++ + Y S +++G+++ V
Sbjct: 841 ELIDIFYRALDADKTGEEVKLRRGLEPKCYPHFMRKQNQTSRRTYYTSTSILGQIYDMVD 900
Query: 726 DIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDD 761
A RL + +YDP E F+ +I++
Sbjct: 901 KNAD-----RLGYRPEETIAYDPKFEFGRFDRYIEN 931
>gi|121713002|ref|XP_001274112.1| RNA-directed RNA polymerase, putative [Aspergillus clavatus NRRL 1]
gi|119402265|gb|EAW12686.1| RNA-directed RNA polymerase, putative [Aspergillus clavatus NRRL 1]
Length = 1313
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 137/574 (23%), Positives = 226/574 (39%), Gaps = 98/574 (17%)
Query: 312 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK--------KL 363
V +DG +S A + G+ N PS FQ R G KG+ D S +
Sbjct: 634 VMNDGCALMSRGLANAICDSLGITGNTPSCFQGRIAGAKGLWMVDRHQSDISVGGDEFWI 693
Query: 364 SLRDSMRK-----------YESELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFE 411
+ DS K + E +V+ WSK LN QL+++L G
Sbjct: 694 QVSDSQLKIHPHPQTWREPVDEEKLTFEVVKWSKPLHSVELNTQLLAILEHGG------- 746
Query: 412 KKQREAVRQLD--AILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSM---M 466
K R+ + QL I T + L+ SP ++++++ + D S
Sbjct: 747 -KLRDYIAQLTRTGIQTVYQDFAKVLDSDSPVLCRSLIQKIKLVA--DDGSALASQRVKH 803
Query: 467 LQTFRAS------KLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGY---- 516
L+ + A+ +L E R F P + + CL + ++ +++ + Y
Sbjct: 804 LEQWTANDTEAIIRLTEAGFAPRSFYPLRKRLGRCLQDVLARYVDELHIKVPLSTYAFCI 863
Query: 517 ---------RQLH-GESSLFSSSRSR-QRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPA 564
++H G S+ + ++ + + ++ G+ V+V + P P D++ +AV P
Sbjct: 864 ADPYGVLQENEVHFGFSNNWRDAQGQFEDNLLDGMDVLVGRLPAHVPSDIQRRRAVWKPE 923
Query: 565 LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD------PPMDYTPA 618
L H D +VFP G P + SG D DGD+ ++CWD ++ QD P ++ P
Sbjct: 924 LRHFKDVIVFPTAGDIPLAHMLSGGDYDGDMPWICWDQNMV---QDFRNSGLPTEEFPPE 980
Query: 619 QSMQLDHDV---QIEDVEEY----FTNYIVNDSLGIIANAHTVFA-DREPRKARSEPCLQ 670
H V QI+ +E+ FT + LG H + D AR++ +
Sbjct: 981 HFGLTKHSVPMMQIQSTDEFLQSAFTFNLTMSKLGRCTVEHEKLSYDESIDSARAK---E 1037
Query: 671 LAEKFSIAVDFPKTGVP----------AEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKL 720
LA S VD K GV I P +V+E P + KP E N+I L
Sbjct: 1038 LACLLSHLVDGRKGGVHLSEQAWQQYRKTISP--WVREDPAYKNTQRKPKKE--NIIDYL 1093
Query: 721 FRAVKDIAPHTSCI---RLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLM 777
V H R+F + + D D+ V + + +A K D +L ++
Sbjct: 1094 KFEVALKEKHAVLKEFERVFPENESLYDRDDDL-VRPWNEAQREAQIEKQGSDGQLPVVL 1152
Query: 778 DYYGIKTEA---EILTGSIMKMSKSFTKRRDAEA 808
+Y K EA + + + + S S R AE
Sbjct: 1153 NYASSKVEAFYRQWINSVLGENSLSLVAREAAEG 1186
>gi|384495848|gb|EIE86339.1| hypothetical protein RO3G_11050 [Rhizopus delemar RA 99-880]
Length = 150
Score = 77.4 bits (189), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 73/143 (51%), Gaps = 15/143 (10%)
Query: 758 HIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALR 817
+I+ A + +YD KL L++++G+KTE E+LTG ++K K + + ++++R
Sbjct: 4 YINKARELRDHYDVKLAALINHHGVKTETELLTGYVVKWEKKGKGKTVYKQDDNMLKSVR 63
Query: 818 KEARAWFKE----------KSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLS 867
+ W E + ++ YAKA+AWY+VTYHPD Y + S
Sbjct: 64 QLKNEWVDEFEREFIGKHKQIDLSKRNEIYAKAAAWYYVTYHPDERKKYGL-----EYFS 118
Query: 868 FPWCVYDRLVEIKKDKTSIGNAF 890
FPW +Y L IK++ + NA
Sbjct: 119 FPWTIYKYLCHIKQNSDGLLNAL 141
>gi|384496670|gb|EIE87161.1| hypothetical protein RO3G_11872 [Rhizopus delemar RA 99-880]
Length = 1225
Score = 77.4 bits (189), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 119/262 (45%), Gaps = 29/262 (11%)
Query: 440 PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET 499
P ++ LL G+ + F++ + + L++K +I I ++ D
Sbjct: 692 PSNGHEVVVRLLDSGFDL-SNVFVATRISNIFKQLMAPLKSKYKIEIEQSCTVTCIPDPI 750
Query: 500 RTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 559
L +V++Q+S R++ ++ + + ++ G VVVA+NPC DV+ +KA
Sbjct: 751 GILEPDEVYLQLST---RKVDEKTGIRAG-------LILGDVVVARNPCGLKSDVQKVKA 800
Query: 560 VNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYT--- 616
++ PAL D ++F KG ++ G D DGD+ F CWD ++ P P+
Sbjct: 801 IDCPALRMYTDLIIFSTKGESSLASKLGGGDYDGDLVFCCWDQRIVEPFTASPVVKELER 860
Query: 617 PAQSMQLDHDV------QIEDVEEYFTNYIV-----NDSLGIIANAHTVFADREPRKARS 665
AQ+ + D D E+ ++ + + +LG+ N TV A++ +
Sbjct: 861 VAQAFEKDKTTVGQQIGSFADTEKALQSHFIKAQMPDGTLGLYENWRTVLAEKS---SLD 917
Query: 666 EPCLQ-LAEKFSIAVDFPKTGV 686
+P + LA+ + VD PK G+
Sbjct: 918 DPDVSYLAQMCARLVDAPKQGL 939
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 123/301 (40%), Gaps = 55/301 (18%)
Query: 152 RVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIY 211
++ P+++ SNR R F +D FL + + S SP +
Sbjct: 330 KITLRSPKVSASNRFFRKFGQD--RFLEV---------VLSATSSPS-----------MV 367
Query: 212 TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG-----LTAAEIREWMGNFR 266
++ + L+ R F FL + +A +F + G ++ ++ +W
Sbjct: 368 IKLKDYILKPFLLMQRVFRFLFI------KDNALIFFATEGTDLEPISIQQVIDWHMPII 421
Query: 267 EI--RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK---YVFSDGIGKVS 321
E +++KYA+R+ +SSS T+ EIE I D+ I TK +DG G +S
Sbjct: 422 ENWGMSMSKYASRMSLGYSSSIPTIQFEPSEIEYIDDIYSTISTTKDASACMTDGCGIIS 481
Query: 322 AEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP----TSSKKLSLRDSMRKYESELT 377
R++ C D P A Q R G KGV P S K + +R S K+++ L
Sbjct: 482 CAAMREIMG-CQATDRLPCAIQGRIAGAKGVWIIAPDLDFNSGKYIKIRKSQDKFKTGLP 540
Query: 378 KLD--------VLAWSKYQPCF----LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL 425
+ D K C LN Q I +L+ G+ ++F + E + +L ++
Sbjct: 541 QADSHLDPHHYTFDLVKNSICIYPSNLNIQFIQVLAAGGVPTKVFVEILGEYLHRLATVV 600
Query: 426 T 426
T
Sbjct: 601 T 601
>gi|453087546|gb|EMF15587.1| hypothetical protein SEPMUDRAFT_123844 [Mycosphaerella populorum
SO2202]
Length = 1406
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 146/367 (39%), Gaps = 67/367 (18%)
Query: 312 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV------VAADP-------- 357
V SDG ++S A + + K LK P+ QIR G KG+ DP
Sbjct: 714 VMSDGCNRMSYWIAYQYSKKLCLK-RVPATLQIRAAGAKGLWYIDEPAHGDPDIRPAGPL 772
Query: 358 ---TSSKKLSLRDSMRKYESELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKK 413
S+ RD+ + E ++V+ A +P L+ + +L G+ E
Sbjct: 773 LNLAPSQVKVHRDTFYGCDEETLSVNVVKANPGARPSLLHIGYLPILVDRGVPLENIRTL 832
Query: 414 QREAV-RQLDAILTDPLKAQEALELMS------------------------PGENTNILK 448
R+ V RQ D L + L A +L L P +
Sbjct: 833 VRDLVTRQTDGFL-EALAADGSLRLRQWIASHNEFFEARRREAGIDLLAGFPKALEERII 891
Query: 449 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT-RIFIPNGRS-----------MMGCL 496
++L G+ P +L+ ++ AS +L+ K +I +P + M G L
Sbjct: 892 QMLEAGFAPKQNKYLASEVKML-ASSYFDLKNKNFKIELPKSTTLWGIAEPKTGHMRGKL 950
Query: 497 DETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRV 556
D T +L G+V V E + +R F+ ++VA+NP + P D++
Sbjct: 951 DPTGSLRPGEVCVCFE---------EPFDVADVGTRVNFLDDIDILVARNPAMGPSDIQK 1001
Query: 557 LKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYT 616
++AV P L ++F +GMRP N+ G D DGD ++ W+ L P ++ P +
Sbjct: 1002 VRAVFKPQLAKYAGNIIFSARGMRPLANKLQGGDYDGDAFWFTWEPLLTEPFKNAPAPWK 1061
Query: 617 PAQSMQL 623
P QL
Sbjct: 1062 PPDPDQL 1068
>gi|384493387|gb|EIE83878.1| hypothetical protein RO3G_08583 [Rhizopus delemar RA 99-880]
Length = 1222
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 28/224 (12%)
Query: 478 LRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIV 537
+ TK ++ + ++ D T TL +VF+Q+S R++ + + + ++
Sbjct: 728 VNTKYKVEVAQSCTVTCIPDPTGTLEPDEVFLQLST---RKVDERTGVCAG-------LI 777
Query: 538 QGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYF 597
G V+V +NPC DV+ +KAV+ PAL D ++F KG ++ G D DGD+ +
Sbjct: 778 TGDVIVTRNPCGLKSDVQKVKAVDCPALRMYTDLIIFSVKGDTSLASKLGGGDYDGDLIY 837
Query: 598 VCWDDELIPPQQDPPM--------------DYTPAQSMQLDHDVQIEDVEEYFTNYIVND 643
CWD ++ P + P+ T Q + + + + + I +
Sbjct: 838 CCWDQRIVEPFKPSPVVKELKQVYQAFEQDKTTVGQQVSSHTNTEKALQMSFISAQIPDG 897
Query: 644 SLGIIANAHTVFADREPRKARSEPCLQ-LAEKFSIAVDFPKTGV 686
+LG+ N TV A+ R + +P + LA+ + VD PK G+
Sbjct: 898 TLGLYENWRTVLAE---RTSLDDPNVSYLAQMCARLVDAPKQGL 938
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 133/312 (42%), Gaps = 52/312 (16%)
Query: 139 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPR 198
+VY + P R+ P+I SNR+ R F +D FL I+
Sbjct: 318 AIVYYKTINHKP-RISLRPPKIAASNRLFRKFGQD--RFLEIT----------------- 357
Query: 199 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASR----YGLT 254
S+A + R + +L+ R F FL +++++ FA+ ++
Sbjct: 358 TSNACSPSMIRHFKDFY---MKPLLLMQRVFRFLF-----IKDATLVFFATEGIDLEPIS 409
Query: 255 AAEIREWMGNFREI--RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK-TKY 311
++ +W E ++KY +R+ +SSS T+ D+IE I DV + K +
Sbjct: 410 IQQVIDWHLPITENWGMTMSKYVSRMSLGYSSSIPTIQFEPDQIEYIDDVYSKTAKGSAA 469
Query: 312 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP----TSSKKLSLRD 367
+DG G +S +++ C D P A Q R GG KG+ P S K + +R
Sbjct: 470 CMTDGCGIISCAAMKEIMG-CQTTDELPCAVQGRIGGAKGIWIISPDLDFNSGKYIKIRK 528
Query: 368 SMRKYESELTK-----------LDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQR 415
S K+++ L + D++ S P FLN Q I +L+ G+ E+F +
Sbjct: 529 SQNKFKTGLPQSNLRLDPHHYTFDLVKNSICVYPSFLNTQFIQVLAAGGVPTEVFNDILK 588
Query: 416 EAVRQLDAILTD 427
E + ++ ++T+
Sbjct: 589 EYIHRIAIVITE 600
>gi|347839298|emb|CCD53870.1| RNA Polymerase RNA dependante [Botryotinia fuckeliana]
Length = 1007
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 91/378 (24%), Positives = 152/378 (40%), Gaps = 57/378 (15%)
Query: 273 KYAARLGQSFSSSKETLSVHMDEIEIIPDVK---IEIGKTKYVFSDGIGKVSAEFARKVA 329
K AR S ++ T++V +I D++ + YV +DG G++S ARK+
Sbjct: 622 KLFARTALVVSRNRATVTVEETQIRRKEDIRNPDVNDPSKTYVMTDGAGRMSLALARKIV 681
Query: 330 SKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK---LSLRDSMRKYE------------S 374
K L PSAFQ R+G KG+ D T + + L K++ S
Sbjct: 682 LKLELA-YIPSAFQGRFGQAKGLWIVDRTQDIENDWIELYGEQCKWKRGKKGSHDYGHPS 740
Query: 375 ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFE--------KKQREAVRQLDAILT 426
T V + + LN QL+ +L + E + ++++ +L + L
Sbjct: 741 HRTFEVVGHSAPLKTADLNTQLLPILMHQATNPKTMENAIVGALKEGLKQSLEELRSALN 800
Query: 427 DP--LKAQEALELMS----------------PGENTNILKELLICGYKPDAEPFLSMMLQ 468
P L+ L S P +N + L LL G+ P ++ +++
Sbjct: 801 SPQELRCWNRLTNSSLQDRVKNGTLQWLGGLPTKNEDKLNLLLDAGFDPRRLQYVMDLVK 860
Query: 469 TFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSS 528
K EL+ + I + + D L +V + SS +
Sbjct: 861 KSFDMKCAELKERLNITVAKSTKVYMVPDFWGVLEPNEVHLDF-----------SSFVDN 909
Query: 529 SRSRQRFIVQGLVV-VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECS 587
++ + V VA+NP +P D++ + AVN L H+ D +VF KG ++ S
Sbjct: 910 ETGLSDIQLEDMDVLVARNPAHYPSDIQRVTAVNKHELRHLKDVIVFSTKGYPALADKLS 969
Query: 588 GSDLDGDIYFVCWDDELI 605
G D DGDI +VCWD ++
Sbjct: 970 GGDYDGDIAWVCWDRAIV 987
>gi|414588061|tpg|DAA38632.1| TPA: hypothetical protein ZEAMMB73_690745 [Zea mays]
Length = 462
Score = 76.3 bits (186), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 135/297 (45%), Gaps = 52/297 (17%)
Query: 457 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGY 516
P EP+L L +F A + +++ + ++ I +MG D T TL +V V + Y
Sbjct: 45 PLEEPYLLSRL-SFMAKQEMKVFREGKLPIDECYYLMGTTDPTGTLKPNEVCVILDSGQY 103
Query: 517 RQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH-----HMVDC 571
G V+V K+P LH GD+ +L A + L + +
Sbjct: 104 ---------------------SGDVLVFKHPGLHFGDIHILTARQIDGLEKNFIGYSKNA 142
Query: 572 VVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP---QQDPPMDYTPAQSMQLD---- 624
++FP G R +E + SD DGD ++V ++ L+ + +P ++ + Q
Sbjct: 143 ILFPTSGQRSLADEMANSDFDGDEFWVSRNNMLLKTFEKRSEPWVELLKLKETQHRLSKP 202
Query: 625 ---HDVQIEDV---EEYFTNYIVNDSLGIIAN---AH-----TVFADREPRKARSEPCLQ 670
+++ +E V E T +I N + G+ + AH T D++ +K+ E ++
Sbjct: 203 GDLNELILERVLFNECLTTMFIPNYTKGLAPDCWLAHMDRLLTEGVDQDEKKSIVENMIK 262
Query: 671 LAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDI 727
L + + A+D G ++ HL VK YP FMEK +Y S +++G+++ ++I
Sbjct: 263 LVDLYYAALD----GHKVDVDRHLRVKAYPHFMEKKGFESYHSSSILGRIYDETEEI 315
>gi|302501841|ref|XP_003012912.1| RNA-directed RNA polymerase, putative [Arthroderma benhamiae CBS
112371]
gi|291176473|gb|EFE32272.1| RNA-directed RNA polymerase, putative [Arthroderma benhamiae CBS
112371]
Length = 1125
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 96/406 (23%), Positives = 156/406 (38%), Gaps = 81/406 (19%)
Query: 253 LTAAEIREWMGNFREIRNV----AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK 308
+T ++ +W ++ RN +K R+ S + T+++ +E D + E
Sbjct: 298 MTVEQLVDWHIHY--ARNTHQEYSKLFTRIRLGLSRTTATITLRPEEFIYDDDPRQE--- 352
Query: 309 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV--VAADPTSSKKLSLR 366
SDG +S R +A L P+ FQ R G KG+ VA D + + ++
Sbjct: 353 ---KMSDGFAMMSRSLGRAIADSLCLS-KVPTIFQGRIAGAKGIWLVAKD---DQDIHVK 405
Query: 367 DSMRKYESE---------------------LTKLDVLAWSKY-QPCFLNRQLISLLSTLG 404
+R +E+E L DV ++S+ QP LN Q + +L G
Sbjct: 406 -GLRNFETERGYWLVINASQLKVQPPPLVILLTFDVSSYSQPPQPVHLNIQFLMVLQDRG 464
Query: 405 IWDE-IFEKKQREAVRQLDAILT----DPLKAQEAL---------------ELMSPGENT 444
+ E I EA + L DP+ + + E P +T
Sbjct: 465 VNKEYILSLIPDEADKFYSEFLLVQNGDPVACRAWVRKNGGDASSQIPALNESTFPTNHT 524
Query: 445 NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNY 504
L LL G+ P F+ + + ++ +I IP + D L
Sbjct: 525 AQLNGLLDAGFSPSNLAFVRRLFKENSLGGFVQKLEALKIKIPQSTYVYCIPDPYGVLEE 584
Query: 505 GQVFVQISGA---GYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 561
GQ+ + + + G L G V+VA+ P P D++ +AV
Sbjct: 585 GQIHLDLGDSWEDGTTDLDGID-----------------VLVARAPAHLPSDIQKCRAVF 627
Query: 562 VPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 607
PAL ++ +FP KG P + SG D DGD +VCWD E++ P
Sbjct: 628 HPALRYLKHVAIFPTKGDVPLASLLSGGDYDGDEVWVCWDQEIVKP 673
>gi|147767777|emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]
Length = 1202
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 99/440 (22%), Positives = 185/440 (42%), Gaps = 90/440 (20%)
Query: 338 PPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLI 397
PP QIR K V DP KLS ++ E T ++ + +L++ LI
Sbjct: 749 PPRTIQIRPSMIK--VETDP----KLSDTQTVNSVEINGTS------NQPRRSYLSKYLI 796
Query: 398 SLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKP 457
+LLS G+ +E F ++A+ ++ + L+ E + +I+ +++ G P
Sbjct: 797 ALLSYGGVPNEYFMNLLKDALEDAPSVQSISLRFDEM--------DDSIVTRMILSGI-P 847
Query: 458 DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR 517
EPFL L + LR ++ + + +MG D T L +V + +
Sbjct: 848 IDEPFLQHRLSFMVNEERKGLRV-GKLPVNDCFYLMGTADPTGKLKSDEVCIILD----- 901
Query: 518 QLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQK 577
HG+ VQG V+V K+P LH GD+ VL A V AL ++
Sbjct: 902 --HGQ--------------VQGRVLVYKHPGLHFGDIHVLNATYVEAL----------EE 935
Query: 578 GMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFT 637
P + S +P ++ P D++P + L+H++ + + T
Sbjct: 936 ASEPWMRKXSTRH--------------VPSKR--PTDFSPDE---LEHEL----FQLFLT 972
Query: 638 N-YIVNDSLGIIANAHTVFADR---------EPRKARSEPCLQLAEKFSIAVDFPKTGVP 687
+ + ++G+ A+ VF DR + ++ L+L + + A+D PK+G+
Sbjct: 973 TRFQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMK 1032
Query: 688 AEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYD 747
+ L +++P FM + + +Y S +++G+++ AV+ P + + RS+
Sbjct: 1033 VNVSKELKAEKFPHFMGR--ESSYHSTSILGQIYDAVESFQPENQSTKDAVPQACLRSWK 1090
Query: 748 PDMEVDGFEDHIDDAIYHKG 767
D + + A+ H G
Sbjct: 1091 D--RYDQYRSEMAAALQHGG 1108
>gi|327301211|ref|XP_003235298.1| hypothetical protein TERG_04355 [Trichophyton rubrum CBS 118892]
gi|326462650|gb|EGD88103.1| hypothetical protein TERG_04355 [Trichophyton rubrum CBS 118892]
Length = 1302
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 108/461 (23%), Positives = 174/461 (37%), Gaps = 86/461 (18%)
Query: 253 LTAAEIREWMGNF--REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK 310
+T ++ +W ++ + +K R+ S + T+++ +E D + E
Sbjct: 576 MTVEQLVDWHIHYDRNTHQEYSKLFTRIRLGLSRTTATITLRPEEFIYDDDPRQE----- 630
Query: 311 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKG--VVAADPTSSKKLSLR-- 366
SDG +S R +A L P+ FQ R G KG VVA D LR
Sbjct: 631 -KMSDGCAMMSRSLGRAIADSLCLS-KVPTCFQGRIAGAKGIWVVAKDNRDIHVKGLRHF 688
Query: 367 DSMRKY-----------------------ESELTKLDVLAWSKY-QPCFLNRQLISLLST 402
++ R Y + +LT DV ++S+ QP LN Q + +L
Sbjct: 689 ETERGYWLVINASQLKVQPPPCDTSLMIDKHQLT-FDVSSYSQPPQPVHLNTQFLMVLQD 747
Query: 403 LGIWDE-----IFEKKQR-----EAVRQLDAILTDPLKAQEALELMS--PGEN------- 443
G E I E+ + V+ D+ Q + S P N
Sbjct: 748 RGTNKEYILSLILEEADKFYSEFLLVQNGDSAACRAWVRQNGGDASSQIPALNESTFSHS 807
Query: 444 -TNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL 502
T L LL G+ P F+ + + + ++ +I P + D L
Sbjct: 808 LTGRLNMLLDAGFSPSTLAFVRRLFKEYSLGGFVQKLEALKIKTPQSTYVYCIPDPYGVL 867
Query: 503 NYGQVFVQISGA---GYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 559
GQV + + + G L G V+VA+ P P D++ +A
Sbjct: 868 EEGQVHLDLGDSWEDGTTDLDGID-----------------VLVARAPAHLPSDIQKCRA 910
Query: 560 VNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPM------ 613
V PAL ++ + +FP KG P + SG D DGD +VCWD E++ P + PM
Sbjct: 911 VFHPALRYLKNVAIFPTKGEVPLASLLSGGDYDGDEVWVCWDQEIVKPFVNYPMPDIPEP 970
Query: 614 -DYTPAQSMQLDHDVQIEDVEEY-FTNYIVNDSLGIIANAH 652
+Y + + D+ + EY F + + LG+ N H
Sbjct: 971 EEYGLVKVSRRVGDMPFDRFMEYSFIFNMSQNPLGLCTNEH 1011
>gi|242216295|ref|XP_002473956.1| predicted protein [Postia placenta Mad-698-R]
gi|220726900|gb|EED80835.1| predicted protein [Postia placenta Mad-698-R]
Length = 1264
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 103/428 (24%), Positives = 164/428 (38%), Gaps = 98/428 (22%)
Query: 271 VAKYAARLGQSFSSSKETL---SVHMDEIEIIPDV------KIEIGKTKYVFSDGIGKVS 321
+K+ R S+S L V +D IE I D+ ++ T+ +F+DG G ++
Sbjct: 535 TSKWITRFELGLSTSMPVLRFRGVGID-IEYIDDLVAPYHSSLKKAPTENIFTDGCGYMN 593
Query: 322 AEFARKVASKCGLKDNPPSAFQIRYGGYKGVVA-----ADPTSSKKLSLRDSMRKYESEL 376
+ G + P + Q R+ G KG+ A +P + ++ +R S +K +
Sbjct: 594 GAALTAIGRLIGYSERP-TVVQGRFAGSKGLWALHPEDQEPNALPRMWIRSSQQKIKHHD 652
Query: 377 TKL-------DVLAWSKYQ-PCFLNRQLISLLSTLGIWDEIFEKKQRE------------ 416
KL D++A + P L+ I LS G+ DE F K ++
Sbjct: 653 EKLGPAQLTFDLVAPPRITIPARLSMYTIMNLSHNGVPDETFIKLMQDGLKKEVEALTTW 712
Query: 417 -----------AVRQLDAILTDPLKAQEA------------------------------L 435
AV Q+ + L+ Q A L
Sbjct: 713 DGPHAMVLLWHAVNQVGHVTLSKLRQQAAGGARILGFGRAQDRDDWEDDDVDDGLEDETL 772
Query: 436 ELMS---PGENTNI---LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 489
E+ S GE T++ + ELL G++P P L L+ A ++ + +I +P
Sbjct: 773 EVGSLEYEGEPTSVSAAVLELLQAGFQPLKLPLLYEKLRKVVADRIEDYIRNYKITVPRS 832
Query: 490 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 549
D L GQ+ +L IV G V++ +NP
Sbjct: 833 AEAFIIPDPYGVLEEGQI----------HFKSTQNLKDPLEESNPTIVTGDVLIYRNPTR 882
Query: 550 HPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI---- 605
P DVR +KAV+ P L V+ +V P KG R N +G D+DGD+ +D +L+
Sbjct: 883 VPSDVRKVKAVSHPKLDKYVNVIVLPVKGSRSLANILAGGDVDGDVCTCIFDPDLVDSFE 942
Query: 606 -PPQQDPP 612
P DPP
Sbjct: 943 NSPINDPP 950
>gi|296817563|ref|XP_002849118.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
gi|238839571|gb|EEQ29233.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
Length = 1255
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 95/410 (23%), Positives = 162/410 (39%), Gaps = 50/410 (12%)
Query: 246 MFASRYGLTAAEIREWMGNFREIRNVAKYA--ARLGQSFSSSKETLSVHMDEIEIIPDVK 303
+ SR +T ++ W + + ++ Y R+ S + T+++ +E+ D +
Sbjct: 573 LSGSRTPMTVEQLVNWHILYPKNKHQEDYKLFNRIRLGLSRTTPTITLRPEEVIYDNDPR 632
Query: 304 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV--VAADPTSSK 361
E SDG +S + + GL P+ FQ R+ G KG+ VA D +
Sbjct: 633 QE------QMSDGCALISKSLGKAITDSLGLS-KVPACFQGRFAGAKGIWIVARDDQCPQ 685
Query: 362 KLSLRDSM---RKY----------------------ESELTKLDVLAWSKY-QPCFLNRQ 395
LR + R Y + DV ++++ Q +LN Q
Sbjct: 686 VNGLRQTFETDRGYWMVINASQLKVKPPPCDRGVLLDKHQMTFDVSSYARTPQSVYLNTQ 745
Query: 396 LISLLSTLGIWDEIFE-KKQREAVRQLDAILT-----DPLKAQEALELMSPGENTNILKE 449
+ +L GI E Q EA + D L D ++ ++ M + +K
Sbjct: 746 FLMVLQNAGINKEYLSFIIQMEADKFYDGYLEIIRTGDSAACRDWIKRMG---GSTAVKA 802
Query: 450 LLICGYKPDAEPFLSMMLQT-FRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 508
+ G+ PD + M+L F SKL LR + + N +G L + + V+
Sbjct: 803 TMSDGFPPDTLGQIIMLLDAGFLPSKLYFLRRLFKFYFDNYLQKLGDL-KIKIPKSTYVY 861
Query: 509 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHH 567
G + GE L + G+ ++VA+ P P D++ +A+ PAL H
Sbjct: 862 CIADPYGVLE-EGEVHLAPGDNWEDTPDLDGIDILVARAPAHLPSDIQKCRAIFHPALRH 920
Query: 568 MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTP 617
+ +F KG P + SG D DGD + CW+ L+ P ++ P P
Sbjct: 921 LKGVAIFSTKGDVPLASLLSGGDYDGDEVWACWEPGLVNPFRNQPFQEIP 970
>gi|405952890|gb|EKC20647.1| Putative RNA-dependent RNA polymerase 2 [Crassostrea gigas]
Length = 266
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 62/102 (60%), Gaps = 4/102 (3%)
Query: 339 PSAFQIRYGGYKGVVAADPT---SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQ 395
PSAFQIR+GG KG+VA DPT + L +R SM+K+ES+ L++L + +LN+Q
Sbjct: 136 PSAFQIRFGGCKGMVAQDPTLGNDTDILVIRKSMKKFESKSNNLEILDVTGPGRLYLNKQ 195
Query: 396 LISLLSTLGIWDEIFEKKQREAVRQL-DAILTDPLKAQEALE 436
+I+LLS LGI D +F Q + + D +L D L LE
Sbjct: 196 VITLLSGLGIQDHVFLNLQENMLVDIADILLYDHLALPALLE 237
>gi|297832164|ref|XP_002883964.1| hypothetical protein ARALYDRAFT_319567 [Arabidopsis lyrata subsp.
lyrata]
gi|297329804|gb|EFH60223.1| hypothetical protein ARALYDRAFT_319567 [Arabidopsis lyrata subsp.
lyrata]
Length = 893
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 157/690 (22%), Positives = 262/690 (37%), Gaps = 168/690 (24%)
Query: 133 AISLDDGLVYVHRVQVTPSRVY-FCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIH 191
++ D G + ++ VTP Y F G + + L D DN L + F
Sbjct: 200 SLESDSGKTHYYQCHVTPDGSYRFKGYLLENTGTHLHKVLGD-DNVLTVKF--------- 249
Query: 192 STDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAF------------SSSQL 239
D P+ S+ + Y++ +NGI++G R+++ F S+ Q+
Sbjct: 250 --DQLPKESTYCN----DPYSKHKEIAKNGIMVGLRRYQIFVFKDGGKAEKKKRNSTKQV 303
Query: 240 R-------ESSAWMFASRYGLTAAEIREWMGNFREIRNV---AKYAARLGQSFSSSKETL 289
+ +++ + Y L I E +F + + A Y AR S +K+ L
Sbjct: 304 KCYFIRMDSTASSDMENPYILAGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKK-L 362
Query: 290 SVHMDEIEIIP------------DVKIEIGKTKYVFSDGIGKVSAEFARKV--------- 328
V M I + DV + GK + + SDG G +S + AR
Sbjct: 363 EVDMTGITVKQIDDIHCHDQSNNDVLDKNGKPR-IHSDGTGYISEDLARMCPVNIFKGKN 421
Query: 329 -------ASKCGLKDNPPSAFQIRY----GGYKGVVAADPT-SSKKLSLRDSMRKYE--- 373
CG PP QIR KG+ + + + +R SM K
Sbjct: 422 IKSDIIQGKTCG--QEPPLLIQIRMFNDGSAVKGIFLLNKNLPPRTVQVRPSMIKVYKDK 479
Query: 374 -----SELTKLDVLAWSKY-QPCFLNRQLISLLSTLGIWDEIF--------EKKQ----- 414
S L+V+ S + L++ L++LLS G+ ++ F EKK
Sbjct: 480 NLSNFSTFNSLEVVTTSNPPKRAKLSKNLVALLSYGGVPNDFFLDILLNTLEKKNTVFFK 539
Query: 415 -----REAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQT 469
+ ++R L L + + ++ N L+ +I P EP+L L
Sbjct: 540 IRAAGKGSMRSHMMALFLSLFVFCSCTSLRNMDDKNALQ--MIMAGIPLDEPYLKHHLSL 597
Query: 470 FRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSS 529
K +L+ R+ I +MG +D T L +V V +
Sbjct: 598 LLKIKKDDLKA-GRLPIDESYYLMGTVDPTGELKEDEVCVIL------------------ 638
Query: 530 RSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD----CVVFPQKGMRPHPNE 585
NP LH GD+ +L+A V L V V FPQKG R +E
Sbjct: 639 ----------------NPGLHFGDIHILQATYVKTLEQYVGNSKYAVFFPQKGPRSLGDE 682
Query: 586 CSGSDLDGDIYFVCWDDELI----PPQ----QDPPMD-YTPAQSMQLDHDVQIEDVEEYF 636
+G D DGD+YF+ + +L+ P + PP YT + +L + E++ F
Sbjct: 683 IAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPPSKIYTGRKPSELSPEQLEEELFNMF 742
Query: 637 --TNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHL 694
T + ++ +G A++ DR L L ++ A+D PKTG +P +
Sbjct: 743 LKTGFSPSNVIGQAADSWLGIMDR---------FLTLGDEN--AIDAPKTGTEVNLPFDV 791
Query: 695 YVKEYPDFMEKPDKPTYESQNVIGKLFRAV 724
+P +ME+ ++S +++G +F V
Sbjct: 792 KADVFPHYMER--NKIFKSISILGLIFDTV 819
>gi|402074256|gb|EJT69785.1| RNA-dependent RNA polymerase [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1442
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 144/334 (43%), Gaps = 33/334 (9%)
Query: 312 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKG---VVAADPTSSKKLSLRDS 368
V +DG+G +S A+K+ GL P A Q R G KG + D + + S
Sbjct: 731 VMNDGVGLMSRSVAQKIQKTLGLV-TVPCAVQGRLGSAKGMWIIDVEDLSGEDWIETYPS 789
Query: 369 MRKYESELTKLDVLAW------SKYQPCFLNRQLISLLST---------LGIWDEIFEKK 413
RK+E ++ D S+ + LN Q + +L + D + E
Sbjct: 790 QRKWECDIGDPDQRTLEVRSHASELRSARLNLQFLPVLEDRSRDKDAFRTAVGDLLGENL 849
Query: 414 QREAVRQLDAILTDPLKAQEALELMSPGENTNILK-ELLICGYKPDA-EPFLSMML-QTF 470
Q E + L A L P++ ++ + S +T + ++ G PD E ++MML F
Sbjct: 850 QTE-LGGLRAALNRPIQHRQWVHENSSNRDTRVRHGQVPFLGGSPDKDEELMNMMLDHGF 908
Query: 471 RASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQ---VFVQISGAGYRQLHGESSLFS 527
K L+ + + L E + G+ ++ + G+ + FS
Sbjct: 909 DPKKQKYLQDLAWVL---QKKKCETLKEKLNITVGKSAYAYMVVDFGGHLEPDEVHMCFS 965
Query: 528 SSRSRQRF---IVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHP 583
S F ++ G+ ++VA++P + D++ +KAV PAL + D +VFP+KG
Sbjct: 966 SKFQVDDFADTLLDGIELLVARSPAHYISDIQKVKAVFKPALKDLKDVIVFPRKGRVALA 1025
Query: 584 NECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTP 617
++ SG D DGD +VCWD ++ + P+ P
Sbjct: 1026 DKLSGGDYDGDKAWVCWDQAIVKNFVNSPVPRAP 1059
>gi|429863502|gb|ELA37949.1| RNA-dependent RNA polymerase, partial [Colletotrichum
gloeosporioides Nara gc5]
Length = 989
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 97/396 (24%), Positives = 159/396 (40%), Gaps = 57/396 (14%)
Query: 250 RYGLTAAEIREWMGNF--REIRNVAKYAARLGQSFSSSKETLSVHMDEI-EIIPDVKIEI 306
R L E+ +W+ E + K AR+ S + + D+I + DV I
Sbjct: 523 RQKLEVREMLDWLLQLDRNEDQLYLKLFARIQLGLSKTTAVAVLDQDQIRHMQKDVVSPI 582
Query: 307 GKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKG---VVAADPTSSKKL 363
G+ V +DG+G++S ARKV L D P SA Q R G KG + D S +
Sbjct: 583 GQ---VMNDGVGRMSLSLARKVRDVLELSDVP-SAIQGRLGSAKGMWIIDVEDTGSDIWI 638
Query: 364 SLRDSMRKYESE--------LTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQ- 414
S RK+ + L D +A + + LN Q + +L +I K
Sbjct: 639 ETWPSQRKWNCDFLHQEHRTLEIKDFVA--EPRSANLNIQFLPILEDRAKDKQIMRKVVG 696
Query: 415 ----REAVRQLDAI---LTDPLK----------------AQEALELMS--PGENTNILKE 449
R+ +L+A+ + PL+ A ++ ++ P L
Sbjct: 697 DNVLRQLSDELEALRNAIKHPLQFRKWVDENSTARKKRLAHSSVPFLAGLPESKEEQLSY 756
Query: 450 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFV 509
L G++P + F+ M+ ++ K + K I IPN + +D L +V V
Sbjct: 757 LGDGGFEPTKQKFMQDMMWKLQSKKCENVTKKMSIRIPNSAYLYMVVDFWGILEENEVHV 816
Query: 510 QISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMV 569
S + +S L V+VA++P D++ +KAV P L +
Sbjct: 817 CFSSTFRTEGFSDSMLHGCD-----------VLVARSPAHLVSDIQRVKAVFKPELRALK 865
Query: 570 DCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
+ +VFP KG ++ SG D DG +VCW+ ++
Sbjct: 866 NVIVFPAKGDVALADKLSGGDYDGGRAWVCWEPAIV 901
>gi|393236487|gb|EJD44035.1| hypothetical protein AURDEDRAFT_114369 [Auricularia delicata
TFB-10046 SS5]
Length = 1203
Score = 72.8 bits (177), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 107/507 (21%), Positives = 187/507 (36%), Gaps = 101/507 (19%)
Query: 269 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK------TKYVFSDGIGKVSA 322
+ K+++RL S+S V + + I D+ E + T+ +DG G V+
Sbjct: 443 QGAGKWSSRLALFLSTSIPAFRVKKENVHFISDIAGEGCQPGEKVPTEKNMTDGSGFVNR 502
Query: 323 EFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK-------KLSLRDSMRK---- 371
+ + D PS Q R GG KG+ P + + ++ +R S K
Sbjct: 503 AGLEACQKRVEM-DYTPSGAQGRIGGAKGMFFRHPQAGEYGNLTEPEIWIRASQEKIKYA 561
Query: 372 ---------YESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD 422
+ D+L L+ QLI + G+ +F Q A+ +L
Sbjct: 562 AFSPTSREPVDEAFLTFDLLKVPHTSAARLSAQLILNTESNGVPARVFVTLQEAALDELV 621
Query: 423 AILT----DPLKAQEALELMSPG-----------------------ENTNILKE------ 449
LT D A +L G EN +++++
Sbjct: 622 VPLTTWAGDRGMPNLAAQLEQKGLLFARRLATLAAGAARARGHRNRENEDVVEDDPDGVS 681
Query: 450 -----------------LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 492
LL + P + +L +L++ + + I +P
Sbjct: 682 ESAVAACLDRWGEVCLRLLHARFHPQSCKYLYDILRSVIKTHIESFVKDYHIELPLSAQA 741
Query: 493 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 552
D L G++F R ++G F + ++ G V+V ++PC+ P
Sbjct: 742 FIAPDPFGVLEVGEIFFHPRSHTLRDVNGHE--FDDN------VLLGDVLVGRHPCVLPT 793
Query: 553 DVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPP 612
DVR + AV+ AL D + F KG R N SG D DGD + W E++ P Q+ P
Sbjct: 794 DVRKVVAVDSLALRPYRDIIFFSTKGTRSLANILSGGDYDGDTAVLIWQTEVVQPFQNAP 853
Query: 613 MDYT-PAQSMQLDHDVQIEDVEEYFTNYIVN-------------DSLGIIANAHTVFADR 658
+ P +++ + +++ V++ TN N + +G+ +N H +
Sbjct: 854 LHLADPPANVETSFEAEMQSVKDLLTNGHFNHLRLSFLLSGLKKNPVGLYSNFHLLACYV 913
Query: 659 EPRKARSEPCLQLAEKFSIAVDFPKTG 685
+ R+E +LA +D PKTG
Sbjct: 914 Q--GYRNEETRRLAHISGQLLDAPKTG 938
>gi|389740949|gb|EIM82139.1| hypothetical protein STEHIDRAFT_161484 [Stereum hirsutum FP-91666
SS1]
Length = 1302
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 95/430 (22%), Positives = 166/430 (38%), Gaps = 74/430 (17%)
Query: 269 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDV-----KIEIGK---TKYVFSDGIGKV 320
+ +AK+AAR+ S+S + ++I + P++ +G ++ +DG G +
Sbjct: 454 QTIAKWAARIPLGLSNSVPGPKLECNQIRLEPEIISSSWNPSMGPKPPSEMEMTDGCGFI 513
Query: 321 SAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT---------------SSKKLSL 365
+ +++ S D+ P A Q+R G KG++ P+ S K+
Sbjct: 514 NQTALQELHSN-KFWDSIPVAIQVRVAGNKGLLTRHPSNDANYLKYPCIWVRPSQTKIHY 572
Query: 366 RDSMRKYESELTKLDVLAWSKYQPCF-LNRQLISLLSTLGIWDEIFEKKQREAVRQL--- 421
D +E +DVL S + +++++ + G+ EI ++ RE++ +L
Sbjct: 573 SDQDLAHEPAKRTIDVLRASHMRSGIQASKEVLVNFAENGVPHEILSRRMRESLEELMEQ 632
Query: 422 -----------------DAILTDPLKAQEALELMSPG-----------ENTNILKELLIC 453
IL + + A E G E + E +C
Sbjct: 633 LLQWDDMLQLYRLVFKEGGILGARMAREAAGEARVRGYRAYDNEDDDKEEDERISEETVC 692
Query: 454 -----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 508
G+ P L+ L+ + + + ++ IP S D T TL G++
Sbjct: 693 YFLDSGFTPQNNAILAEKLKEVITKAMKKRIARCKVEIPMSCSAWIIPDPTGTLKEGEIH 752
Query: 509 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 568
++ S L G+ + V G V+V+++PC P DV+ + AV L
Sbjct: 753 IRSSAPN---LKGQDGQLTEQ-------VLGPVLVSRHPCKLPTDVQKVTAVYYSQLEKY 802
Query: 569 VDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP--QQDPPMDYTPAQSMQLDHD 626
VD +VF KG R + D DGD WD E+ P DP P M+ +
Sbjct: 803 VDVIVFSTKGCRSLASMLGTGDYDGDKVEAVWDPEIAGPFRNADPKFADPPPDLMK-NFK 861
Query: 627 VQIEDVEEYF 636
Q E V E+
Sbjct: 862 KQNETVAEFL 871
>gi|406863804|gb|EKD16851.1| hypothetical protein MBM_05320 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1323
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 162/392 (41%), Gaps = 62/392 (15%)
Query: 258 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGI 317
+R GN E + K R + S ++ T+ + D+I+I+ I G K V +DG
Sbjct: 574 VRPSQGN--EHESYLKLFNRTTLALSRTESTVVLMPDQIKIMAQ-NITFGDPKNVMNDGA 630
Query: 318 GKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAAD-------------PTSSKKLS 364
G++S A K+ GL P+AFQ R G KG+ D P+ K +
Sbjct: 631 GRMSPSLALKITQTLGLS-YLPAAFQGRIGEAKGLWITDLHYTGQDDWIETYPSQRKWVR 689
Query: 365 LR--------DSMRKYE-----SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWD---- 407
+ +S R +E L D+ ++ P ++R LL + D
Sbjct: 690 KKTGDQESDDESHRTFEVSKCSGPLKSADLNL--QFLPILMDRAKDKLLMKRVLSDILKH 747
Query: 408 -------EIFEKKQR-EAVRQLDAILTDPLKAQEALELMSPGENTNILKE----LLICGY 455
EI E + + RQ +K +E + N+L+E LL G+
Sbjct: 748 GLQLRVQEIQEARDHPQLFRQWVRDSNPNMKERERGSIGYKAGLPNVLEERLNILLDAGF 807
Query: 456 KPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL--DETRTLNYGQVFVQISG 513
P F+ + + ++ EL K R+ I GRS + D L G+V++ S
Sbjct: 808 HPKGIRFMEDLAKKVFTKRIDEL--KKRLNITVGRSTYAYMVPDFWGVLEEGEVYIDFSS 865
Query: 514 AGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVV 573
+ S L +S S + ++VA++P D++ +KAV L + D ++
Sbjct: 866 F----VDNVSGLSGASPSGSQ------ILVARSPAHFVSDIQKVKAVIREELVGLKDVII 915
Query: 574 FPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
F KG ++ SG D DGD+ +VCW+ ++
Sbjct: 916 FSVKGYPALADKLSGGDYDGDVAWVCWEPAIV 947
>gi|452985629|gb|EME85385.1| hypothetical protein MYCFIDRAFT_83458, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 1527
Score = 70.5 bits (171), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 27/179 (15%)
Query: 449 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMG--------CLDETR 500
++L G P E FL+ ++T + L + +I + +++G CL
Sbjct: 1009 QMLESGLVPSQEAFLASEVRTMVKTVLDTKKKNFKIPLSRSTTLLGVALADPLNCLAPGE 1068
Query: 501 T-LNYGQVFV-QISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLK 558
+N+ + F +I+G + LH L +A+NP + P D++ +K
Sbjct: 1069 IHVNFARTFCDKITGMPWSILHEMECL-----------------IARNPAMAPWDMQKVK 1111
Query: 559 AVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTP 617
AV P L H+ + V+ KG RP G D DGD +++CW+ L+ P ++ P + P
Sbjct: 1112 AVFKPELAHLPNVVILSAKGKRPLAELLQGGDYDGDTFWLCWEPRLVRPFRNHPAPWDP 1170
>gi|218187686|gb|EEC70113.1| hypothetical protein OsI_00772 [Oryza sativa Indica Group]
Length = 1155
Score = 70.1 bits (170), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 143/336 (42%), Gaps = 51/336 (15%)
Query: 393 NRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL-MSPGENTNILKELL 451
+R LI+LL G+ +E F + + A+ + D ++AL + S + + + +
Sbjct: 699 SRFLITLLCYGGVPEEYFLELLQSAIEGAENACYD---YEDALRIAFSYADMEDSMSARM 755
Query: 452 ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI 511
I P E +L L F A + + + +I I +M D T TL +V V +
Sbjct: 756 ILSGIPLEESYLQHRLD-FMAQQERKGIKQGKIPIDECYYLMDTTDPTGTLRPNEVCVIL 814
Query: 512 SGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH----- 566
E+ FS G V+V K+P LH GD+ VLKA + L
Sbjct: 815 ----------ENGQFS-----------GDVLVYKHPGLHFGDIHVLKATYIRDLEKEYVG 853
Query: 567 HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHD 626
+ ++FP G R +E + SD DGDIY+V + +L+ P + A +
Sbjct: 854 YAKYAILFPISGPRSLADEMANSDFDGDIYWVSKNPKLLE-HFKPSEPWVQAIKPKKTKQ 912
Query: 627 VQIEDVEE-----------YFTNYIVNDSLGIIANAHTVFADRE--------PRKARSEP 667
+ +D E T + + +LG A++ + DR +K E
Sbjct: 913 KKPQDCNESKLERLLFHEFLKTRFTPSFALGTAADSWLAYMDRLLTDSLDEIEKKLIEEK 972
Query: 668 CLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFM 703
++L + + +A+D PKTG IP L VK+YP FM
Sbjct: 973 MIKLVDLYYLALDAPKTGNKVNIPSDLMVKQYPHFM 1008
>gi|170091852|ref|XP_001877148.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648641|gb|EDR12884.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1193
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 119/305 (39%), Gaps = 62/305 (20%)
Query: 450 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFV 509
L+ G+ P P L L+ S + RI +P S D L G++F
Sbjct: 676 LIDAGFTPQTCPVLRSKLEKIVKSSVKNYIKAYRIDVPMSASAFLVPDILGVLKPGEIFY 735
Query: 510 QISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL------------ 557
+ S RQ G + I+ G V++ ++PC P D++ +
Sbjct: 736 KSSRRNLRQTDGTET----------DIMLGDVLITRHPCKLPTDIQKVRASSQFMFVKHL 785
Query: 558 -----KAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPP 612
KAV+ P LHH+ D +V P G R + SG D DGD + EL+ P + P
Sbjct: 786 YSPQWKAVDRPELHHLTDVIVLPTTGDRRAADLLSGGDYDGDKGLITNQPELVIPFINAP 845
Query: 613 MDYT-PAQSMQ-------------------LDHDVQIEDVEEYFTNYIVNDS-LGIIANA 651
+ ++ P +MQ L D +I + ++Y I + S +G +N
Sbjct: 846 LHFSEPPSNMQKYFVRENEAVPAFLERTSVLSDDAKIHERQQYLLGAIRDTSVVGKYSNF 905
Query: 652 HT----VFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPD 707
H P R LA F + +D KTG+ + P + + + ++P
Sbjct: 906 HEAAIYTLGYTHPETIR------LAYMFCMTLDGAKTGM--TVLPQVLKDDTRKYQKRP- 956
Query: 708 KPTYE 712
PT++
Sbjct: 957 -PTWK 960
>gi|326475512|gb|EGD99521.1| hypothetical protein TESG_06788 [Trichophyton tonsurans CBS 112818]
Length = 1298
Score = 69.3 bits (168), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 121/347 (34%), Gaps = 72/347 (20%)
Query: 313 FSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV--VAADPTSSKKLSLR---- 366
SDG +S R +A L P+ FQ R G KGV VA D LR
Sbjct: 628 MSDGFAMMSRSLGRAIADSICLS-KVPTCFQGRIAGAKGVWVVAKDDQDIHVKGLRHFET 686
Query: 367 --------------------DSMRKYESELTKLDVLAWSKY-QPCFLNRQLISLLSTLGI 405
D+ ++ DV ++S+ QP LN Q + +L G
Sbjct: 687 ERGYWLVINASQLKVQPPPCDTSLMFDKHQLTFDVSSYSQPPQPVHLNTQFLMVLQDRGT 746
Query: 406 WDEIF----------------------EKKQREAVRQLDAILTDPLKAQEALELMSPGEN 443
E R VRQ + + A E P
Sbjct: 747 NKEYILSLIPEEADKFYSEFLLVQNGDSAACRAWVRQNGGDASSQIPALN--ESTFPPSR 804
Query: 444 TNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN 503
T L L G+ P F+ + + ++ +I IP + D L
Sbjct: 805 TVQLNMFLDAGFLPSNLAFVRRLFKENFLGVFVQKLEALKIKIPKSTYVYCIPDPYGVLE 864
Query: 504 YGQVFVQISGA---GYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAV 560
GQ+ + + + G L G V+VA+ P P D++ +AV
Sbjct: 865 EGQIHLDLGDSWEDGTTDLDGID-----------------VLVARAPAHLPSDIQKCRAV 907
Query: 561 NVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 607
PAL ++ + +FP KG P + SG D DGD +VCWD E++ P
Sbjct: 908 FHPALRYLKNVAIFPTKGEVPLASLLSGGDYDGDEVWVCWDQEIVKP 954
>gi|443894414|dbj|GAC71762.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
Length = 1339
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 8/159 (5%)
Query: 449 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 508
++L G+ P + +L+ L + + ++ + + I M D T TL G++
Sbjct: 767 DMLKIGFHPRSCSYLAGFLVEIADTAMKKVTQRFAVSIARSAEAMVIPDPTGTLEEGEIQ 826
Query: 509 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 568
+ SG +S SR + +G V+V ++PCL P D+R ++AV L
Sbjct: 827 FRFSG--------DSICDPDSRLALHHVPEGDVLVTRHPCLLPTDIRKVRAVVRSELSRF 878
Query: 569 VDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 607
D VVF KG P + SG D DGD+ V W+ L+ P
Sbjct: 879 QDVVVFSTKGHTPLASLLSGGDYDGDLIRVFWEPRLVDP 917
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 98/225 (43%), Gaps = 37/225 (16%)
Query: 235 SSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMD 294
SS+Q W F + AA +G F I+ + +LG S S T+ D
Sbjct: 486 SSAQPEFDCVWDFVDHHAPFAANGSSQLGKF--IQRI-----QLGLSTSVPASTI----D 534
Query: 295 EIEIIPDVKIE---IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKG 351
I + D++ + + + + +DG +S AR VA + L + PSA Q R G KG
Sbjct: 535 TITYVSDLRGDPHPVTGEQVIMTDGAATMSLAVARDVAQRLSLT-SVPSAIQARVAGAKG 593
Query: 352 VVAADPTSSKKL---------SLRDSMRKYE------SELTK--LDVLAWSK-YQPCFLN 393
V DP + L +R S K E +L++ LD+L S+ P L+
Sbjct: 594 VWYLDPNAQSWLPGEEPKRWIHIRKSQNKIEYPRDEPRDLSQQVLDLLTASRTTSPSSLS 653
Query: 394 RQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELM 438
+Q+I +L + G+ E F Q+ +R +TD + E +L+
Sbjct: 654 KQIILVLHSNGVPTETFAALQQAELR----AITDSISNWEGPDLL 694
>gi|242207403|ref|XP_002469555.1| predicted protein [Postia placenta Mad-698-R]
gi|220731359|gb|EED85204.1| predicted protein [Postia placenta Mad-698-R]
Length = 1264
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 98/428 (22%), Positives = 160/428 (37%), Gaps = 98/428 (22%)
Query: 271 VAKYAARLGQSFSSSKETL---SVHMDEIEIIPDV------KIEIGKTKYVFSDGIGKVS 321
+K+ R S+S L V +D IE I D+ ++ T+ +F+DG G ++
Sbjct: 535 TSKWITRFELGLSTSMPVLRFRGVGID-IEYIDDLVAPYHPSLKKAPTENIFTDGCGYMN 593
Query: 322 AEFARKVASKCGLKDNPPSAFQIRYGGYKGVVA-----ADPTSSKKLSLRDSMRKYESEL 376
+ G + P + Q R+ G KG+ A +P + ++ +R S +K +
Sbjct: 594 GAALTAIGRLIGYSERP-TVVQGRFAGSKGLWALHPDDQEPNALPRMWIRSSQQKIKHHD 652
Query: 377 TKL-------DVLAWSKYQ-PCFLNRQLISLLSTLGIWDEIFEKKQRE------------ 416
KL D++A + P L+ I LS G+ DE F K ++
Sbjct: 653 EKLGPAQLTFDLVAPPRITIPARLSMYTIMNLSHNGVPDETFIKLMQDGLKKEVEALTTW 712
Query: 417 -----------AVRQLDAILTDPLKAQ--------------------------------- 432
AV Q+ + L+ Q
Sbjct: 713 DGPHAMVLLWHAVNQVGHVTLSKLRQQAAGGARILGFGRAQDRDDWEDDDVDDGLEDETP 772
Query: 433 EALELMSPGENTNI---LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 489
E L GE T++ + ELL G++P P L L+ A ++ + +I +P
Sbjct: 773 EIGSLEYEGEPTSVSAAVLELLQAGFQPLKLPLLYEKLRKVVADRIEDYIRNYKIAVPRS 832
Query: 490 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 549
D L ++ +L I+ G V++ +NP
Sbjct: 833 AEAFIIPDPYGVLEESEI----------HFKSTQNLQDPLEESNPTIITGDVLIYRNPTR 882
Query: 550 HPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI---- 605
P DVR +KAV+ P L V+ +V P KG R N +G D+DGD+ +D +L+
Sbjct: 883 VPSDVRKVKAVSHPKLDKYVNVIVLPVKGSRSLANILAGGDVDGDVCTCIFDPDLVDSFE 942
Query: 606 -PPQQDPP 612
P DPP
Sbjct: 943 NSPINDPP 950
>gi|326483110|gb|EGE07120.1| RNA-directed RNA polymerase [Trichophyton equinum CBS 127.97]
Length = 1286
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 134/329 (40%), Gaps = 48/329 (14%)
Query: 313 FSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV--VAADPTSSKKLSLR---- 366
SDG +S R +A L P+ FQ R G KGV VA D LR
Sbjct: 628 MSDGFAMMSRSLGRAIADSICLS-KVPTCFQGRIAGAKGVWVVAKDDQDIHVKGLRHFET 686
Query: 367 --------------------DSMRKYESELTKLDVLAWSKY-QPCFLNRQLISLLSTLGI 405
D+ ++ DV ++S+ QP LN Q + +L G
Sbjct: 687 ERGYWLVINASQLKVQPPPCDTSLMFDKHQLTFDVSSYSQPPQPVHLNTQFLMVLQDRGT 746
Query: 406 WDE----IFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEP 461
E + K+ + + + A A + G+ ++ + L + P
Sbjct: 747 NKEYILSLIPKEADKFYSEFLLVQNGDSAACRAWVRQNGGDASSQIPALNESTFPPSRTV 806
Query: 462 FLSMMLQT-FRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR-QL 519
L+M L F S L +R R+F N +G D + L + ++I + Y+ Q+
Sbjct: 807 QLNMFLDAGFLPSNLAFVR---RLFKEN---FLG--DFVQKLE--ALKIKIPKSTYKAQI 856
Query: 520 HGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 578
H + S + G+ V+VA+ P P D++ +AV PAL ++ + +FP KG
Sbjct: 857 HLD---LGDSWEDGTTDLDGIDVLVARAPAHLPSDIQKCRAVFHPALRYLKNVAIFPTKG 913
Query: 579 MRPHPNECSGSDLDGDIYFVCWDDELIPP 607
P + SG D DGD +VCWD E++ P
Sbjct: 914 EVPLASLLSGGDYDGDEVWVCWDQEIVKP 942
>gi|403160269|ref|XP_003320812.2| hypothetical protein PGTG_02834 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169485|gb|EFP76393.2| hypothetical protein PGTG_02834 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1164
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 152/353 (43%), Gaps = 60/353 (16%)
Query: 298 IIPDVKIEIGKTK----YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVV 353
++P ++IEI K K + +DG + A + GL P+A+Q R KG+
Sbjct: 435 VVPRMRIEIRKGKPTDEVMMTDGAAAIGWGAALGIKKALGLS-YLPAAYQARILKSKGLW 493
Query: 354 AADPTSSKK---LSLRDSMRKYESELTKLDVLAW------SKYQPCFLNRQLISLLSTLG 404
K + +RDS K + D + + ++ + +NRQ I ++ +
Sbjct: 494 YLSRDLDKDGFWIEIRDSQWKGDVRCKPGDAITFNICNFSTRAKAGHVNRQSIPVIVSRN 553
Query: 405 IWDEIFEKKQREAVRQ-LDAIL-TDPLKAQEALEL-----------MSPGENTNILKELL 451
+ +F +QREA + LD + T+P+ +ALE+ ++ N+ + KE+
Sbjct: 554 VPVSVFTDRQREAFKAVLDELTSTNPVHLSQALEVHGHLLNLKAKRLTTTTNSFVRKEVD 613
Query: 452 ICGYKPDA---------EPFLSMMLQTFRA-------------SKLLELRTKTRIFIPNG 489
G + E + ++ F A ++ E ++ I +
Sbjct: 614 EVGVTWEKYSNRPCNAMEEIVELLKSGFTARNNRVVDRLNVAGKQICEKMMNFKVEISSS 673
Query: 490 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 549
++ D T TL G+VF+++S R ++S+ + I++G VVA++PC+
Sbjct: 674 ATIYAIPDPTGTLKEGEVFLRLS----RFRDPKTSVPVN-------ILKGDCVVARSPCV 722
Query: 550 HPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDD 602
P D R +KAV L D +V +G + + SG D DGD+ V WDD
Sbjct: 723 LPTDARKVKAVTNQRLACYEDVLVCSIQGKKSLLDYLSGGDYDGDVVIVIWDD 775
>gi|290994090|ref|XP_002679665.1| predicted protein [Naegleria gruberi]
gi|284093283|gb|EFC46921.1| predicted protein [Naegleria gruberi]
Length = 1014
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 104/439 (23%), Positives = 182/439 (41%), Gaps = 74/439 (16%)
Query: 220 NGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGN----FREIRNVAKYA 275
NGI ++F + S+S ++ SSA +F + L ++ +G+ + V K A
Sbjct: 263 NGISYEGHCYKFFSTSNSGMKGSSA-VFINSTLLNLETVKLLVGSSFDKALQTGGVRKVA 321
Query: 276 ARLGQSFSSSKETLSV-HMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC-- 332
+R+G S +S ++L+ D+I +P IE ++ +DG G ++F ++ K
Sbjct: 322 SRIGLSIGTSIQSLATFEFDQIFCLPQ-NIE---DEFPITDGSGLARSDFFEEILEKTYA 377
Query: 333 -------GLKDNPP--------------SAFQIRYGGYKGVVAADPTS------------ 359
L +P SA Q+R G KGV+ P S
Sbjct: 378 IPYFEMEKLAKHPEMKLSRRLETDYKNVSAIQVRMLGAKGVLQKIPDSLWKVLQVKWKFP 437
Query: 360 -SKKLSLRDSMRKYESE-LTKLDVLAWSKYQPCFLNRQLISLL----STLGIWDEIFEKK 413
S K+ LR+SM K+E+ K+DVL++S ++R ++S L +EIF
Sbjct: 438 DSTKVILRNSMIKFETAYYKKIDVLSYSSATGGSISRGVMSCLLERTDHREEMEEIFMND 497
Query: 414 QREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRAS 473
+ +++++ DP+ L L G L + LI P F+ +++ +
Sbjct: 498 LDDYLKEMEDNRNDPIYVCNYL-LTGTGNTKEGLAKQLIMADHPLNNYFIDSVIRENIKT 556
Query: 474 KLLELRTKTRIFIPNGR---SMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSR 530
+ L L F N S +G +DE+ L G++ H F++S
Sbjct: 557 RHLGLVNDNLSFKINSHYCVSALGGVDESGELKEGEI------------HINCDAFTNS- 603
Query: 531 SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA---LHHMVDCVVFP-QKGMRPHPNEC 586
++ V+V +NP + GD++ LK P L + + F KG R
Sbjct: 604 --PYYLELDYVLVYRNPLGYEGDIQKLKIKKNPQSEFLKSRRNSITFAMSKGTRNPIGFM 661
Query: 587 SGSDLDGDIYFVCWDDELI 605
G D DGD Y + + +++
Sbjct: 662 QGGDFDGDRYNIIFHPKIV 680
>gi|324526384|gb|ADY48663.1| RNA-dependent RNA polymerase 2 [Ascaris suum]
Length = 156
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 33/157 (21%)
Query: 276 ARLGQSFSSSKETLSVHM------DEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVA 329
AR+GQ F+ +KE S+ + +II ++ Y FSDG G++S EFA+++A
Sbjct: 2 ARMGQCFTQAKEC-SIKLLHRRYNKTFDIIGG--MDSSGEPYTFSDGCGRLSPEFAQRIA 58
Query: 330 SKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLS-----------------------LR 366
L PS FQIR+ G KGVV+ DP +++ S R
Sbjct: 59 DDLHLGKCVPSCFQIRFRGIKGVVSVDPWLTERASWATEHNIADNMENYNKKNKLYMLFR 118
Query: 367 DSMRKYESELT-KLDVLAWSKYQPCFLNRQLISLLST 402
S K+ + L+ K++++ +S P LNR I++L T
Sbjct: 119 PSQDKFHAPLSHKIEIVKYSSPTPVCLNRPYIAILLT 155
>gi|389742384|gb|EIM83571.1| hypothetical protein STEHIDRAFT_101865 [Stereum hirsutum FP-91666
SS1]
Length = 987
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 96/438 (21%), Positives = 159/438 (36%), Gaps = 82/438 (18%)
Query: 253 LTAAEIREWMGNF--REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIP-----DVKIE 305
L+ + W +F + V+K+ R S+S L D+IE+IP D+
Sbjct: 220 LSLGQFLSWHNSFSRNSKQAVSKWVTRFDLGLSTSVPVLQFAPDDIEVIPDKYPKDIDQS 279
Query: 306 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV-----VAADPTSS 360
T+ +DG G ++ VA G +P +A Q R G KGV V DP S
Sbjct: 280 NASTEQTLTDGCGFMNMAALVAVARSMGFL-SPHTAVQGRIAGSKGVWMLHPVDRDPHSP 338
Query: 361 KKLSLRDS--------MRKYESELTKLDVLAWSKYQ-PCFLNRQLISLLSTLGIWDEIFE 411
++ +RDS R ++ E D L S+ P L+ Q I + G+ +E F
Sbjct: 339 PRIWIRDSQVKIKLGDQRLWKREHLIFDFLGPSRVTYPGRLSMQFIINMEHNGVPNEAFA 398
Query: 412 KKQREAVRQ-LDAILT-----DPLKAQEALELMSPGENTNILK----------------- 448
+ +R+ +D ++ P ++AL+ M + + +
Sbjct: 399 LLMDDGLREHIDPLMKWDGPEAPHLLRDALDKMGNVSGSKVQQLAGSSRRALGLGQKFGR 458
Query: 449 --ELLICGYKPDAEP------------FLSMMLQTFRASKLLELRTKTR----------- 483
E + G + +P + M+ F + LRT+ R
Sbjct: 459 DNEQPLAGVEDGGDPAAEEAEIFCHERVMMMLAAGFTPKNAIYLRTELRELISREIEKWV 518
Query: 484 ----IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 539
I IP+ D L Q+F Q S G + S I++G
Sbjct: 519 KNYHIVIPHSAEAFIVPDPYGILEPDQIFFQSSVPLNDPATGMNMNIS--------ILEG 570
Query: 540 LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVC 599
++ +NP P D++ + AV P D ++ KG +G D DGD +
Sbjct: 571 PCLIGRNPARLPSDIQKVTAVYRPQYKEYKDVIICSIKGKVSAAFPLAGGDYDGDRALLQ 630
Query: 600 WDDELIPPQQDPPMDYTP 617
W ++ P P + P
Sbjct: 631 WSPTVVEPFSRPYAEVVP 648
>gi|409079756|gb|EKM80117.1| hypothetical protein AGABI1DRAFT_127795 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1114
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 103/267 (38%), Gaps = 34/267 (12%)
Query: 440 PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET 499
P + E L G+ P P L + S + I +P D +
Sbjct: 622 PSSLEETIIEFLDSGFHPQTCPVLREKMHKVVRSAISRAVENYTIELPFSAGAWIIPDPS 681
Query: 500 RTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 559
L +VF Q S + + + I+ G V++ ++PC P DV+ KA
Sbjct: 682 GCLESNEVFFQCSRS-----------LPALDGTETHIITGDVLITRDPCRLPTDVQKWKA 730
Query: 560 VNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI-------PPQQDPP 612
++VP LH D ++ +G R + +G D DGD + W EL+ P DPP
Sbjct: 731 IDVPELHQYKDVIILSVQGPRRAADWLAGGDYDGDKAKLIWQPELVQDFVNAHPSFADPP 790
Query: 613 MDYTP-------------AQSMQLDHDVQIEDVEEYFTNYIVNDSL-GIIANAHTVFADR 658
++ A+ D +I +V++Y + + +L G +N H V
Sbjct: 791 LNLDSKFEIENKQVHEFLAEIEGCSEDNKINEVQKYLLGTLKDFTLVGKYSNFHEVSVYT 850
Query: 659 EPRKARSEPCLQLAEKFSIAVDFPKTG 685
K++ LA F+ +D KTG
Sbjct: 851 NGYKSKETKL--LAYMFTTILDGRKTG 875
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 91/246 (36%), Gaps = 46/246 (18%)
Query: 149 TPSRVYFCGPEINV-----SNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSAT 203
+P F E+N SN RHF FLR+S D L + H
Sbjct: 258 SPDNKKFLKIELNAAKLGPSNSFSRHFGSKY--FLRLSMSDSRLGQAH------------ 303
Query: 204 DITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL---RESSAWMFA--------SRYG 252
+ IL LR +++ F + R + W S G
Sbjct: 304 -------HLNILDYLRKPVILCQHIFRAFYLKDQHVYYFRTNEVWDVGKQIISPLLSSPG 356
Query: 253 LTAAEIREWMG--NFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK 310
L+ E +W + + +AK+A+R S S ++ I I D++ +
Sbjct: 357 LSFMEFVQWHNPIELNQRQTMAKWASRFALGLSPSILGFTLDEKNIRFIKDIRSNVNSD- 415
Query: 311 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP---TSSKKLSLRD 367
+DG G ++ +K++ N PSA Q+R G KG++ +P S + LR
Sbjct: 416 --MTDGAGYITRHLLQKLSVLHNW-GNRPSAIQVRVRGSKGLLVENPDVKDESLSIKLRP 472
Query: 368 SMRKYE 373
S+ K +
Sbjct: 473 SLMKID 478
>gi|426198482|gb|EKV48408.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1114
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 103/267 (38%), Gaps = 34/267 (12%)
Query: 440 PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET 499
P + E L G+ P P L + S + I +P D +
Sbjct: 622 PSSLEETIIEFLDSGFHPKTCPVLREKMHKVVHSAISRAVENYTIELPFSAGAWIIPDPS 681
Query: 500 RTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 559
L +VF Q S + + + I+ G V++ ++PC P DV+ KA
Sbjct: 682 GCLGSNEVFFQCSRS-----------LPALDGTETHIITGDVLITRDPCRLPTDVQKWKA 730
Query: 560 VNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI-------PPQQDPP 612
++VP LH D ++ +G R + +G D DGD + W EL+ P DPP
Sbjct: 731 IDVPELHQYKDVIILSVQGPRRAADWLAGGDYDGDKAKLIWQPELVQDFVNANPSFADPP 790
Query: 613 MDYTP-------------AQSMQLDHDVQIEDVEEYFTNYIVNDSL-GIIANAHTVFADR 658
++ A+ D +I +V++Y + + +L G +N H V
Sbjct: 791 LNLDSKFEIENKQVHEFLAEIEGCSEDNKINEVQKYLLGTLKDFTLVGKYSNFHEVSVYT 850
Query: 659 EPRKARSEPCLQLAEKFSIAVDFPKTG 685
K++ LA F+ +D KTG
Sbjct: 851 NGYKSKETKL--LAYMFTTILDGRKTG 875
Score = 40.0 bits (92), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 88/246 (35%), Gaps = 46/246 (18%)
Query: 149 TPSRVYFCGPEINV-----SNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSAT 203
+P F E+N SN RHF FLR+S D L + H
Sbjct: 258 SPDNKKFLKIELNAAKLGPSNSFSRHFGSKY--FLRLSMSDSRLGQAH------------ 303
Query: 204 DITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL---RESSAWMFASRYGLTAA---- 256
+ IL LR +++ F + R + W +
Sbjct: 304 -------HLNILDYLRKPVILCQHIFRAFYLKDQHVYYFRTNEVWDVGKQIISPLLSSSG 356
Query: 257 ----EIREWMG--NFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK 310
E +W + + +AK+A+R S S ++ I I D++ +
Sbjct: 357 LSFMEFVQWHNPIELNQRQTMAKWASRFALGLSPSILGFTLDEKNISFIEDIRSNVNSD- 415
Query: 311 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP---TSSKKLSLRD 367
+DG G ++ +K++ N PSA Q+R G KG++ +P S + LR
Sbjct: 416 --MTDGAGYITRHLLQKLSVLHNW-GNRPSAIQVRVRGSKGLLVENPDVKDESLSIKLRP 472
Query: 368 SMRKYE 373
S+ K +
Sbjct: 473 SLMKID 478
>gi|168049572|ref|XP_001777236.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162671338|gb|EDQ57891.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 1040
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 141/621 (22%), Positives = 247/621 (39%), Gaps = 104/621 (16%)
Query: 270 NVAKYAARLGQSFSSSKETLSVHMDEIEI--IPDV--KIEIGKTKYV-FSDGIGKVSAEF 324
+ ++A+RL + S S T +++ DEIE+ IPD+ K K++ ++G ++S +
Sbjct: 404 TMPRFASRLQLALSKSV-TANLNWDEIEVKQIPDILSKTLDNSGKFMAHTEGTSEISPDV 462
Query: 325 ARKV-ASKCGLKDNPPSAFQIRYGG---YKGVV------AADPTSSKKLSLRDSMRKYES 374
AR + S C + P + G +KG+ ++ R SM K S
Sbjct: 463 ARLLPCSVCKGRVGEPKGYPTLVQGCLFWKGMAIKGTWQVNHQLKGLQILYRPSMVKVTS 522
Query: 375 ELTKLDVLAWSKYQ-----PCF------LNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 423
+ D+ ++ C+ L++ LI LLS + F + +A+ +L
Sbjct: 523 DPILKDIPTIKSFEVVNTNTCYKLEEARLSQDLIILLSINNVPASFFLELVEKALEKLRT 582
Query: 424 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 483
T+ + L+ SP +I P + P + L+ K+ LR K
Sbjct: 583 FFTERGQVFRELKSCSPDYAVGDQTLRMIMANIPMSNPQMQNNLKKITQDKIALLR-KGC 641
Query: 484 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVV 543
+ +P +MG D T+ V I G + V G V+V
Sbjct: 642 LPLPQSYYLMGTSDPTKEKVLKPNEVAIVKNGEK-------------------VIGKVLV 682
Query: 544 AKNPCLHPGDVRVLKAVNVPALHHMVD----CVVFPQKGMRPHPNECSGSDLDGDIYFVC 599
KNP H GDV + AV L+ V + F +G RP +E + SDL GD++++
Sbjct: 683 YKNPGKHWGDVHIFDAVWDERLNPYVGPTKHAIFFSVRGNRPVVDEIANSDLCGDLFWLI 742
Query: 600 --------WD---DELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGII 648
W +++ P D P + T S L++ + + ++ FT Y GI
Sbjct: 743 SLFTPSLPWKRIGEKINYPIGDGPSNLT---SRALEYTLFDKFLKSRFTPYKPMSQAGIF 799
Query: 649 ANAHTVFADR-----------EPRKARSEPCLQLAEKFSIAVDFPKTG------------ 685
AH DR + + SE +L + F A+D KTG
Sbjct: 800 WTAHM---DRYLSLKDADEYSDELELISESLEELIDIFYRALDADKTGEELCLHRHTFAW 856
Query: 686 VPAEIPPHLYVKEYPDFME--KPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVAR 743
+ ++P L +P F++ + ++ Y S +++G+++ V C K
Sbjct: 857 MSVKLPRRLEPDCFPHFLKEIQTNRTYYTSTSILGQIYDMVVRNVDGIGC-----KPEET 911
Query: 744 RSYDPDMEVDGFEDHID--DAIYHKGNYDYK--LGNLMDYYGIKTEAEILTGSIMKMSKS 799
+YDP E F+ +++ + + N D K + N + I EIL G+ +++
Sbjct: 912 IAYDPKFEYGRFDRYMERWRGLLQQYNKDIKAAIKNHEEDRVIAYYQEILQGTNKSITQM 971
Query: 800 FTKRRDAEAIG--MAVRALRK 818
+ + A+ AV LRK
Sbjct: 972 WEEASALYAVNHEHAVMTLRK 992
>gi|320170627|gb|EFW47526.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 1247
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 138/342 (40%), Gaps = 86/342 (25%)
Query: 334 LKDNP--PSAFQIRYGGYKGVV----------------AADPTSSKKLSLRDSMRKYES- 374
L+DN PSA+QIR+GG+KG++ AA P S + L SM K+++
Sbjct: 413 LEDNSFVPSAYQIRFGGFKGMLVVVTETVQEQLCKGISAAAPMPS--MLLPRSMLKFQTP 470
Query: 375 ---ELTKLDVLAWS-KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP-- 428
E +L+VL + P LN +++ +L +G+ + R +++L D
Sbjct: 471 DFPEHRRLEVLGCAFPSSPVTLNNEIVDML--IGVATDSL--VMRGFLKRLVTTFLDDCN 526
Query: 429 --LKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 486
L Q+ E +I +L G+ L +F SKL+ L I +
Sbjct: 527 FLLADQQKALAYYLQEKDDIGVRMLAAGHS-----LKFTYLTSFFRSKLIPLH----IPL 577
Query: 487 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 546
P+ + G D + L G V+V GE+ L V G VV+ K
Sbjct: 578 PSTARLYGVADWSSLLPPGHVYVN---------SGETGL-----------VSGDVVMLKE 617
Query: 547 PCLHPGDVRVLKAVN-----VPALHHMVDCVVFPQKG--MRPHPNECSGSDLDGDIYFVC 599
PC D++ KA++ L H+ + VVF + +GSDLDGD + VC
Sbjct: 618 PCFLRTDIQRFKAIDRDHVAFKQLCHLRNVVVFSTASSCTSSDASAMAGSDLDGDKFIVC 677
Query: 600 WDDELI-----------------PPQQDPPMDYTPAQSMQLD 624
WD ++ P+ PP P+ S Q D
Sbjct: 678 WDQTILDNVDCQTAQKVQQASGNTPEPMPPQTAMPSSSEQED 719
>gi|302883308|ref|XP_003040555.1| hypothetical protein NECHADRAFT_106579 [Nectria haematococca mpVI
77-13-4]
gi|256721441|gb|EEU34842.1| hypothetical protein NECHADRAFT_106579 [Nectria haematococca mpVI
77-13-4]
Length = 936
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 93/393 (23%), Positives = 154/393 (39%), Gaps = 74/393 (18%)
Query: 233 AFSSSQLRESSA-WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSV 291
+F LR+S A W+ +R REW F + N+A + F+ L
Sbjct: 240 SFRDVDLRKSLARWLVHTRQAFLH---REWAAFFVQDCNIAPTFPKRVFLFAERGHGLIP 296
Query: 292 HMDE----IEIIPDVKIEIGKTK-YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRY 346
M I + + I K + +DGIG++S R+V + L ++ P Q R
Sbjct: 297 SMKSEHAVTGTIRNHRANILSPKGVIMNDGIGRLSPSLMREVGNALSL-ESIPLVIQGRI 355
Query: 347 GGYKGVVAADPTS---SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQL-ISLLST 402
G KG+ D TS K + + S RK+ + W + P ++ + +L
Sbjct: 356 GSAKGLWITDMTSVGDEKWIEIYSSQRKWACD--------W--FDPAHRTLEVFVPILEA 405
Query: 403 LGIWDEIFEKK--QREAV-------RQLDAILTDPLKAQEALELMSPGENTNILKELLIC 453
I E+ K Q AV R +A+ + P + +I+ L+
Sbjct: 406 GAIDKELMRKTIVQHMAVQLRSDLERAKNAMRQPESQGDSGFVGGLPKDFADIMNFLVDG 465
Query: 454 GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISG 513
G+ P FL+ +L +L K DE F I
Sbjct: 466 GFDPLKLQFLN---------ELDKLNVKVL-----------AADEVHL-----CFSSIFN 500
Query: 514 AGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCV 572
G R+LH ++G+ V+V + P P D++ +KAV P L H+ D +
Sbjct: 501 DGTRELHD---------------LEGMDVLVGRCPAHLPSDIQKVKAVFRPELRHLKDII 545
Query: 573 VFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
+FP G +P + SG + DG+ ++CWD +++
Sbjct: 546 IFPCTGDKPLAQKLSGGNYDGNRAWICWDPDMV 578
>gi|403411358|emb|CCL98058.1| predicted protein [Fibroporia radiculosa]
Length = 1270
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 13/184 (7%)
Query: 437 LMSPGENTNI---LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 493
L+ PGE ++ + ELL G+ P P L L+ ++ E + RI + N
Sbjct: 767 LIFPGEPQSVHGAVLELLQAGFHPLELPILYEKLRQIVEKRIEEFIKEYRIVLENSAEAF 826
Query: 494 GCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGD 553
D L GQ+ Q +L + G V++ +NP P D
Sbjct: 827 IMPDPYGVLEEGQI----------QFIATQNLKDPLEDPMPMAITGEVLLYRNPARVPSD 876
Query: 554 VRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPM 613
VR + AV P L V+ +V P KG R N +G D+DGD+ ++ L+ P ++ P+
Sbjct: 877 VRKVIAVVHPKLVEYVNVIVLPTKGKRSLANILAGGDVDGDVAVCIYEPSLVKPFRNGPI 936
Query: 614 DYTP 617
+ P
Sbjct: 937 NDPP 940
Score = 39.7 bits (91), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 86/186 (46%), Gaps = 23/186 (12%)
Query: 262 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI--IPDVKI----EIGK--TKYVF 313
+G+ + +K+ R S+S L + +++I I D+ +GK T+ +F
Sbjct: 518 LGDHTRLSPTSKWITRFDLGLSTSVPVLRLRGIDVDIFYIEDIVAPFDSSLGKAPTENIF 577
Query: 314 SDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAA-----DPTSSKKLSLRDS 368
+DG G ++ + + G + P+ Q R+ G KG+ A DP ++ +R S
Sbjct: 578 TDGCGYMNGAALTLIGRRLGYSER-PAVVQGRFAGSKGLWALHPHDRDPRDKPRIWIRPS 636
Query: 369 MRK------YESELTKLDVLAWSKY-QPCFLNRQLISLLSTLGIWDEIFEKKQREAV-RQ 420
K + ++L D++A + P L+ I LS G+ DE+F ++ + ++
Sbjct: 637 QEKIKYGQLHPAQLI-FDLVAPPRITTPSRLSMYTIMNLSHNGVPDEVFTTLMKDGLQKE 695
Query: 421 LDAILT 426
+DA+ T
Sbjct: 696 IDALTT 701
>gi|393232270|gb|EJD39854.1| hypothetical protein AURDEDRAFT_171128 [Auricularia delicata
TFB-10046 SS5]
Length = 1291
Score = 65.9 bits (159), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 14/173 (8%)
Query: 433 EALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 492
+A E ++P + +L G+ P P L ++T + + K R+ I
Sbjct: 791 DAQEYLTPAA---MALRMLFSGFDPVTCPILRSHIRTVLRTSTEQYLKKFRVEITMSAEA 847
Query: 493 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 552
M D + L ++F+ S + + R + G V+V +NP P
Sbjct: 848 MIISDTSLVLGENEIFL-----------SSSKVLLDNSGRTMNHLSGDVLVYRNPVRLPC 896
Query: 553 DVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
D++ +KAV P L H D +VF KG R ++ +G D DGD V WD +++
Sbjct: 897 DIQKVKAVYKPELDHYRDVIVFSAKGTRSLASKLAGGDYDGDTAVVIWDQDIV 949
>gi|402219719|gb|EJT99791.1| hypothetical protein DACRYDRAFT_100977 [Dacryopinax sp. DJM-731
SS1]
Length = 1204
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 113/542 (20%), Positives = 206/542 (38%), Gaps = 118/542 (21%)
Query: 264 NFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDV------KIEIGKTKYVFSDGI 317
N + + K+A R+ +SSS + + I+++ D+ + + +DG
Sbjct: 481 NLNQKQTSGKWAKRMQLLWSSSVPGPRLEAENIKMVDDIIAPSFRHLPKAPAERDMTDGA 540
Query: 318 GKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV-----VAADPTSSKKLSLRDS---M 369
G ++ AR + ++ GL+ +PP A Q R GG KG+ + +D + + R S +
Sbjct: 541 GLMTYAVARDIQARLGLR-HPPCAVQYRTGGLKGMWVLRALTSDDDGHRFVWYRPSQLKI 599
Query: 370 RKYESELTK-----LDVLAWSKYQ-PCFLNRQLISLLSTLGIWDEI-------------- 409
R ES+L K ++VL+ SK P L QL+ LL+ G+ +++
Sbjct: 600 RHSESQLEKNALRTIEVLSPSKLSAPARLTTQLVVLLAENGVPNKLLVDLMVKALKSSLL 659
Query: 410 --FEKKQRE-----AVRQLDAILTDPLKAQEAL-------ELMS-------------PGE 442
F+KK + A+ + ++ L +L EL PG
Sbjct: 660 PFFDKKSKPVHMAFALEEFCNLMVQRLSRAGSLLRGGSVRELAQEEEEEEEEDFEDHPGS 719
Query: 443 NTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL 502
+ + G+ +L ++ + R I D T L
Sbjct: 720 YEELAYLCFLSGFTLGGSVYLRRKVRDILKKLIQATTADIRFRIERCVDGKIVPDPTGKL 779
Query: 503 NYGQVFVQI-------SGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR 555
G++FVQ + L G+ L + +F +G+V+
Sbjct: 780 KPGEIFVQFRREYDVTDTESMKILTGDVLLLYQEK---KFYAEGIVIK------------ 824
Query: 556 VLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ------ 609
+KAV++ LH+M D +V +G R + G D DGD V W+ +++ P +
Sbjct: 825 -MKAVDIDELHYMYDVIVMSTEGERSPASMLGGGDYDGDRATVIWEPQIVEPFKTADPKF 883
Query: 610 -DPPMDY---------TPAQSMQLDHDVQIEDVEEYFTNYIVND-----SLGIIANAHTV 654
D P ++ T A +Q H + Y++ D + ++ H V
Sbjct: 884 ADQPENFDRFLDRDTTTVASLLQKMHGWNASAIRSEIQKYLLCDLHSDFQMQGYSHRHDV 943
Query: 655 ----FADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPT 710
P+ ++ A K+ +++D KTGV ++ +Y ++ E P KP
Sbjct: 944 VLYLLGASHPK------AVEFAHKYMVSLDSAKTGV--KVKADVYAEDREYDREHPWKPR 995
Query: 711 YE 712
E
Sbjct: 996 EE 997
>gi|224146916|ref|XP_002336366.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222834816|gb|EEE73265.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 320
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 82/182 (45%), Gaps = 32/182 (17%)
Query: 445 NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNY 504
NI+ ++ CG P EP+L L + L+ +I +P +MG D T L
Sbjct: 34 NIVATMIGCGI-PLEEPYLQCRLSILMKEEKKSLKGG-KIPVPESYYLMGTADPTGLLES 91
Query: 505 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 564
+V + + Q+ GE V++ +NP LH GD+ +LKA V
Sbjct: 92 DEVCIILDCG---QISGE------------------VLIYRNPGLHFGDIHILKATYVRE 130
Query: 565 LHHMVD----CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP--QQDPPMDYTPA 618
L V + FP KG R +E SG D DGD++FV + +L+ Q +P +TP+
Sbjct: 131 LEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPQLLETFKQTEP---WTPS 187
Query: 619 QS 620
S
Sbjct: 188 TS 189
>gi|325093828|gb|EGC47138.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
Length = 1387
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 92/379 (24%), Positives = 143/379 (37%), Gaps = 76/379 (20%)
Query: 273 KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC 332
K RL S + T+ + +EI + D V +DG +S VAS
Sbjct: 661 KLFQRLHLGLSRTLATVILRREEIIYVKD------PPGTVMNDGCALMSKSLGMAVASAL 714
Query: 333 GLKDNPPSAFQIRYGGYKGVVAADPTSSK--------KLSLRDSMRKY------------ 372
GL D P+ FQ R G KGV D S+ L + S K
Sbjct: 715 GL-DGHPAIFQARISGAKGVWMVDLDDSRFKTGDRGFWLQITQSQLKIYPAPPHDTKPMD 773
Query: 373 ESELTKLDVLAWSK-YQPCFLNRQLISLLSTLGI----------------WDEIFEK--- 412
+++LT +V+ WS+ P LN QL+++L GI +DE
Sbjct: 774 DTQLT-FEVVQWSRPLSPASLNMQLLNILQHGGIRNDHIRNLIRQEMSSFYDEFLRTLLC 832
Query: 413 ----KQREAVRQLDAILTDPLKAQ-EALELMSPGENTNILKELLICGYKPDAEPFLSMML 467
+ R ++++ I + K Q + + P + LL G+ P P+L+ +
Sbjct: 833 SSGVECRSWLQKMKWITNESSKRQSKRTDNFFPPQYAEQAIMLLDAGFLPLKLPYLTKIF 892
Query: 468 QTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQIS-----GAGYRQLHGE 522
+ L L+ K +I + D L +V + S G+ +LH
Sbjct: 893 RRLLQDYLDNLK-KLKITVSQSTFAYCVADPFGVLRPDEVHLGFSREWEHGSASTELHDI 951
Query: 523 SSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPH 582
V++A+ P D++ ++V L HM D +VFP G P
Sbjct: 952 D-----------------VLLARLPAHLATDIQKRRSVYKNELRHMKDVIVFPTTGDTPL 994
Query: 583 PNECSGSDLDGDIYFVCWD 601
+ SG D DGD +VCWD
Sbjct: 995 ASLLSGGDYDGDQCWVCWD 1013
>gi|240277746|gb|EER41254.1| RNA-directed RNA polymerase [Ajellomyces capsulatus H143]
Length = 1317
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 92/379 (24%), Positives = 143/379 (37%), Gaps = 76/379 (20%)
Query: 273 KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC 332
K RL S + T+ + +EI + D V +DG +S VAS
Sbjct: 591 KLFQRLHLGLSRTLATVILRREEIIYVKD------PPGTVMNDGCALMSKSLGMAVASAL 644
Query: 333 GLKDNPPSAFQIRYGGYKGVVAADPTSSK--------KLSLRDSMRKY------------ 372
GL D P+ FQ R G KGV D S+ L + S K
Sbjct: 645 GL-DGHPAIFQARISGAKGVWMVDLDDSRFKTGDRGFWLQITQSQLKIYPAPPHDTKPMD 703
Query: 373 ESELTKLDVLAWSK-YQPCFLNRQLISLLSTLGI----------------WDEIFEK--- 412
+++LT +V+ WS+ P LN QL+++L GI +DE
Sbjct: 704 DTQLT-FEVVQWSRPLSPASLNMQLLNILQHGGIRNDHIRNLIRQEMSSFYDEFLRTLLC 762
Query: 413 ----KQREAVRQLDAILTDPLKAQ-EALELMSPGENTNILKELLICGYKPDAEPFLSMML 467
+ R ++++ I + K Q + + P + LL G+ P P+L+ +
Sbjct: 763 SSGVECRSWLQKMKWITNESSKRQSKRTDNFFPPQYAEQAIMLLDAGFLPLKLPYLTKIF 822
Query: 468 QTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQIS-----GAGYRQLHGE 522
+ L L+ K +I + D L +V + S G+ +LH
Sbjct: 823 RRLLQDYLDNLK-KLKITVSQSTFAYCVADPFGVLRPDEVHLGFSREWEHGSASTELHDI 881
Query: 523 SSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPH 582
V++A+ P D++ ++V L HM D +VFP G P
Sbjct: 882 D-----------------VLLARLPAHLATDIQKRRSVYKNELRHMKDVIVFPTTGDTPL 924
Query: 583 PNECSGSDLDGDIYFVCWD 601
+ SG D DGD +VCWD
Sbjct: 925 ASLLSGGDYDGDQCWVCWD 943
>gi|170084677|ref|XP_001873562.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651114|gb|EDR15354.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1268
Score = 63.9 bits (154), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 107/455 (23%), Positives = 168/455 (36%), Gaps = 102/455 (22%)
Query: 264 NFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE-------IGKTKYVFSDG 316
NF++ +K+ R S+S L ++ I I D+ E + + +DG
Sbjct: 538 NFKQA--ASKFVTRYALGLSNSIPALEFSVENIIFIRDIYAEDWHGEDHKAPAEKIMTDG 595
Query: 317 IGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK---KLSLRDSMRKYE 373
G ++ A K+ K D+ P+ Q R G KG+ PT K+ +RDS K +
Sbjct: 596 CGFINLT-AMKIIKKKFNYDSLPTGIQGRIAGAKGMWIRHPTDDSLEPKIWIRDSQNKIK 654
Query: 374 -SELTK----LDVLAWSK-------YQPCFLNRQ--------LISLLSTLGIWDEIF--- 410
SEL K D+L+ SK Q LN L+ LL GI DE+
Sbjct: 655 LSELDKAHRIFDLLSVSKPSSSIALSQQSILNLSFNGIPDDVLVKLLEQ-GIVDEVMPLL 713
Query: 411 -----------------------EKKQREAV---RQL----------DAILTDPLKAQEA 434
+ QR A R L D + + Q+
Sbjct: 714 DWKRPNAMTVLWDAINKSAGVSGSRTQRVAAGASRALGFQRQDWGHDDVVADQDAETQDI 773
Query: 435 LELMSPGENT---------NILKELLICGYKPDAEPFLS-----MMLQTFRASKLLELRT 480
G N + EL+ G+ P L M+ QT +S
Sbjct: 774 SGTTYTGRNEYSKAPLALHEMTMELIQAGFHPSQCKILQDKIKFMVQQTINSSV-----E 828
Query: 481 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL 540
K RI I D T L GQ++ YR + F++QG
Sbjct: 829 KYRIPIKESTGGYIVADPTGLLEEGQIY-------YR---SSVPMTDPDTEMDYFVLQGE 878
Query: 541 VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCW 600
VV+ + P P D++ + AV++P L + D ++ KG + SG D DGD V
Sbjct: 879 VVLGRYPIRLPSDMQKVTAVDIPELFNWPDVIIVSTKGKFSLASLLSGGDQDGDELLVIK 938
Query: 601 DDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEY 635
D ++ ++ P+ P+ M+ D + ++E V ++
Sbjct: 939 DKLIVDSFKNQPLTVIPSGLMESDFEREVESVPDF 973
>gi|225557198|gb|EEH05485.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus G186AR]
Length = 1388
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 129/340 (37%), Gaps = 70/340 (20%)
Query: 312 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK--------KL 363
V +DG +S VAS GL D P+ FQ R G KGV D S+ L
Sbjct: 694 VMNDGCALMSKSLGMAVASALGL-DGHPAIFQARISGAKGVWMVDLDDSRFKTGDRGFWL 752
Query: 364 SLRDSMRKY------------ESELTKLDVLAWSK-YQPCFLNRQLISLLSTLGI----- 405
+ S K +++LT +V+ WS+ P LN QL+++L GI
Sbjct: 753 QITQSQLKIHPAPPHDTKPMDDTQLT-FEVVQWSRPLSPASLNMQLLNILQHGGIRNDHI 811
Query: 406 -----------WDEIFEK-------KQREAVRQLDAILTDPLKAQ-EALELMSPGENTNI 446
+DE + R ++++ I K Q + + P +
Sbjct: 812 RNLIKQEMSSFYDEFLRTLLCSSGVECRSWLQKMKWITNGSSKRQPKRTDNFFPSQYAEQ 871
Query: 447 LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQ 506
LL G+ P P+L+ + + L L+ K +I + D L +
Sbjct: 872 AIMLLDAGFLPLKLPYLTKIFRRLLQDYLDNLK-KLKITVSQSTFAYCVADPFGVLRPDE 930
Query: 507 VFVQIS-----GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 561
V + S G+ +LH V++A+ P D++ ++V
Sbjct: 931 VHLGFSREWEHGSAGTELHDID-----------------VLLARLPAHLATDIQKRRSVY 973
Query: 562 VPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWD 601
L HM D +VFP G P + SG D DGD +VCWD
Sbjct: 974 KNELRHMKDVIVFPTTGDTPLASLLSGGDYDGDQCWVCWD 1013
>gi|110738636|dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana]
Length = 339
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 26/198 (13%)
Query: 552 GDVRVLKAVNVPALHHMVD----CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIP- 606
GD+ +LKA V AL V V FPQKG R +E +G D DGD+YF+ + EL+
Sbjct: 2 GDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLEN 61
Query: 607 -PQQDPPMDYTP---------AQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFA 656
+P + TP + + + + ++ +GI A++
Sbjct: 62 FKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIM 121
Query: 657 DR---------EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPD 707
DR E + + L+L + + A+D PK G +P L +P +ME+
Sbjct: 122 DRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDK 181
Query: 708 KPTYESQNVIGKLFRAVK 725
K ++S +++G +F VK
Sbjct: 182 K--FQSTSILGLIFDFVK 197
>gi|302653254|ref|XP_003018456.1| RNA-directed RNA polymerase, putative [Trichophyton verrucosum HKI
0517]
gi|291182103|gb|EFE37811.1| RNA-directed RNA polymerase, putative [Trichophyton verrucosum HKI
0517]
Length = 1082
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 103/462 (22%), Positives = 171/462 (37%), Gaps = 89/462 (19%)
Query: 253 LTAAEIREWMGNFREIRNV----AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK 308
+T ++ +W ++ RN +K R+ S + T+++ +E D + E
Sbjct: 357 MTVEQLVDWHIHY--ARNTHQEYSKLFTRIRLGLSRTTATITLRPEEFIYDDDPRQE--- 411
Query: 309 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV--VAADPTSSKKLSLR 366
SDG +S + +A L P+ FQ R G KG+ VA D LR
Sbjct: 412 ---KMSDGFAMMSRSLGKAIADSLCLS-KVPTIFQGRIAGAKGIWLVAKDDHDIHVKGLR 467
Query: 367 ------------------------DSMRKYESELTKLDVLAWSKY-QPCFLNRQLISLLS 401
D+ ++ DV ++S+ QP LN Q + +L
Sbjct: 468 HFETERGYWLVINASQLKVQPPPCDTSLTFDEHQLTFDVSSYSQPPQPVHLNIQFLMVLQ 527
Query: 402 TLGIWDE-IFEKKQREA---------VRQLDAILTDPLKAQEALELMS----------PG 441
G+ E I EA V+ D++ + + S P
Sbjct: 528 DRGVNKEYILSLIPDEADKFYSEFLLVQNGDSVACRAWVRKNGGDASSQILALNESTFPT 587
Query: 442 ENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRT 501
+T L LL G+ P F+ + + ++ +I IP+ + D
Sbjct: 588 NHTAQLNGLLDAGFSPSNLAFVRRLFKENSLGGFVQKLEALKIKIPHSTYVYCIPDPYGV 647
Query: 502 LNYGQVFVQISGA---GYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLK 558
L GQ+ + + + G L G V+VA+ P P D++ +
Sbjct: 648 LEEGQIHLDLGDSWEDGTTDLDGID-----------------VLVARAPAHLPSDIQKCR 690
Query: 559 AVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP-------QQDP 611
AV PAL ++ +F KG P + SG D DGD +VCWD E++ P +
Sbjct: 691 AVFHPALRYLKHVAIF-TKGDVPLASLLSGGDYDGDEVWVCWDQEIVKPFVNYPMPEIPE 749
Query: 612 PMDYTPAQSMQLDHDVQIEDVEEY-FTNYIVNDSLGIIANAH 652
P +Y + + D+ + EY FT + + LG+ N H
Sbjct: 750 PEEYGLVKVSRRVGDMPFDRFMEYAFTFNMSQNPLGLCTNEH 791
>gi|406700852|gb|EKD04014.1| RNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
8904]
Length = 1087
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 83/350 (23%), Positives = 144/350 (41%), Gaps = 72/350 (20%)
Query: 312 VFSDGIGKVSAEFARKVASKCGLKDN--PPSAFQIRYGGYKGVVAADPTSSKK-----LS 364
+ SDG G +S +K+ D PP + Q+R GG KGV++ ++ +
Sbjct: 447 ILSDGCGLMS----QKILHHPFFADLRWPPCSVQMRLGGSKGVLSLMSREQEEEYDADVV 502
Query: 365 LRDSMRKYES--------ELTKLDVLAWSKYQ-PCFLNRQLISLLSTLGIW-DEIFEKKQ 414
LR SM K +S + LDVL + C L+ + I ++ G+ D + K +
Sbjct: 503 LRPSMIKSKSAAGFSDDPSVLTLDVLKVDGLKVGCNLSSEAIIIMEDRGVPPDVLIAKAE 562
Query: 415 REAVRQLDAILTDPLKAQEALELMSPGENTNILKELLI-----------------CGYKP 457
E + +++L P PGEN + +++ L+ C
Sbjct: 563 LEFEKIRESLLPVP----------HPGENEDDVRQRLLHAVYTLGGVGSEREKRRCRQLG 612
Query: 458 DAEPFLSMMLQTFR----------ASKLLELRTKTRIFIPNGRSMMGCL--DETRTLNYG 505
+ + L++ + A K L R + +P +S+ + D L
Sbjct: 613 KSTKVAGLSLESTQQDEYEEDTSVAEKSLTDRAVSDFKLPVDQSLSALIVPDTLGVLKPN 672
Query: 506 QVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 565
++++ S A +L + S R V+G V++ ++PC P DVR ++AV L
Sbjct: 673 EIYIAPSSA---------ALVNPSTMRPMSCVEGDVLIFRSPCKLPTDVRKMRAVYHSKL 723
Query: 566 HHMVDCVVFPQKGMRPHPNECS---GSDLDGDIYFVCWDDELIPPQQDPP 612
H+ DC+V + S G D DGD V WD++L+ P ++ P
Sbjct: 724 KHLQDCIVMSADSAMCTASPASLLAGGDYDGDTATVIWDEDLVKPFRNAP 773
>gi|409051063|gb|EKM60539.1| hypothetical protein PHACADRAFT_82474, partial [Phanerochaete
carnosa HHB-10118-sp]
Length = 639
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 19/166 (11%)
Query: 480 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 539
+K R+ +P S D T L G+++V+ S + L S+ + ++ G
Sbjct: 392 SKYRVNVPMSCSAWAVPDPTGVLEAGEIYVESS----------APLLSADGKTEADVIVG 441
Query: 540 LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHP--------NECSGSDL 591
V++ ++PC P DV+ +KAVN L D VV KG R + G D
Sbjct: 442 DVLITRHPCKVPSDVQKVKAVNRRELRGYKDLVVVSTKGHRVQTQLLDRHLLSMLGGGDY 501
Query: 592 DGDIYFVCWDDELIPP-QQDPPMDYTPAQSMQLDHDVQIEDVEEYF 636
DGD V W+ EL+ Q P TP +S++L + E VE +
Sbjct: 502 DGDRVQVFWNPELVDGFQPADPAFATPPKSVELGLEKNTESVESFL 547
>gi|299747734|ref|XP_001837224.2| hypothetical protein CC1G_00360 [Coprinopsis cinerea okayama7#130]
gi|298407654|gb|EAU84841.2| hypothetical protein CC1G_00360 [Coprinopsis cinerea okayama7#130]
Length = 1039
Score = 62.4 bits (150), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 19/183 (10%)
Query: 439 SPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 498
SP + LL G+ P P L+ L+ +++ L RI +P M D+
Sbjct: 520 SPSSLEETVLALLQSGFHPGFCPVLAEKLKAVIRTRVSRLTHSYRIEVPMSCMAMIVPDK 579
Query: 499 TRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR--V 556
L G++F + S GE + I+ G V++ + PC P D++
Sbjct: 580 RGILKEGEIFFRSSHRDLLDRDGEKT----------DIITGDVLITRYPCKLPTDIQKAS 629
Query: 557 LKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI----PPQQ--- 609
KAV+ P LH +V ++ KG R + G D DGD + W ++ P Q
Sbjct: 630 CKAVDHPGLHDLVGVIILSTKGTRRAADFIGGGDYDGDKAMIIWHPPMVEAFTPKNQCFA 689
Query: 610 DPP 612
DPP
Sbjct: 690 DPP 692
>gi|402576169|gb|EJW70128.1| hypothetical protein WUBG_18968 [Wuchereria bancrofti]
Length = 123
Score = 61.6 bits (148), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 305 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK 362
+ + Y FSDG+GKVS EFA K+A GL + PS +QIR+ G KGV++ DP ++
Sbjct: 26 DTNQASYTFSDGVGKVSKEFAEKIAFDIGLGTSVPSCYQIRHRGIKGVLSVDPNLDQR 83
>gi|325190799|emb|CCA25290.1| RNAdependent RNA Polymerase1 (RDR1) putative [Albugo laibachii
Nc14]
Length = 557
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 104/240 (43%), Gaps = 25/240 (10%)
Query: 645 LGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFME 704
LGI +NAH D + + ++LA S+ VD + ++ L YPDFME
Sbjct: 7 LGIASNAHLARCDYSDKGSFDPDSMKLAWICSLQVDGHRAEEHLQVIRDLSPPIYPDFME 66
Query: 705 KPDKPTYESQNVIGKLFRAVKDIA-PHTSCIRLFTKEVARRSYDPDMEVDGFEDH--IDD 761
++ ++ S +G L+R+ K + SC++ + V + + V + + +
Sbjct: 67 -SERFSHRSSKSLGTLYRSSKILTLLDHSCLKYDEQHV-----NDEFMVGNYTKYAALTK 120
Query: 762 AIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVR-ALRKEA 820
+Y + Y LM YG E E+ +G I+K + R D G R A K
Sbjct: 121 ILYRQ--YSRSTAALMRMYGAVLEGELASGLIIKTDDLY--RTDYFRFGERCRDAFFKNV 176
Query: 821 RAW---FKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLV 877
R + F G+ E + ASAWY+ + C N G NR FLSF W + D L+
Sbjct: 177 RQYRKIFSVLCGTLNEFERCELASAWYYAVF-----SCKN-GQNR--FLSFGWIIMDELL 228
>gi|315048949|ref|XP_003173849.1| RNA directed RNA polymerase [Arthroderma gypseum CBS 118893]
gi|311341816|gb|EFR01019.1| RNA directed RNA polymerase [Arthroderma gypseum CBS 118893]
Length = 1245
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
Query: 541 VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCW 600
V+V++ P P DV+ +AV P L H+ + +F KG P + SG D DGD +VCW
Sbjct: 825 VLVSRAPAHFPSDVQKCRAVYRPELRHLKNVAIFSTKGKVPLASLLSGGDYDGDQVWVCW 884
Query: 601 DDELIPPQQDPPM-------DYTPAQSMQLDHDVQIED-VEEYFTNYIVNDSLGIIANAH 652
+ E++ P + PM +Y + Q D+ +D +E F + + LG+ H
Sbjct: 885 EPEIVKPFVNYPMPDIPKPEEYGLVKVSQRIRDMPFDDFMENSFLFNMWQNPLGLCTFKH 944
>gi|336376861|gb|EGO05196.1| hypothetical protein SERLA73DRAFT_68825 [Serpula lacrymans var.
lacrymans S7.3]
gi|336389793|gb|EGO30936.1| hypothetical protein SERLADRAFT_432597 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1094
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 450 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL-----DETRTLNY 504
LL G+ P P L+ L+ + + + R+ +P M C+ D T TL
Sbjct: 610 LLDAGFTPGDCPILADKLKHIIDTSVDNYVQRYRVDVP-----MSCIAFMVPDPTGTLGP 664
Query: 505 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 564
G++ ++ S + G + IV G V++ ++PC P DV+ ++AV
Sbjct: 665 GEIHIKSSHPKFLCEDGTET----------DIVLGDVLLTRHPCKLPTDVQKVRAVEKAE 714
Query: 565 LHHMVDCVVFPQKGM-RPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYT 616
L H D +V P KG R + +G D DGD W E++ P ++ + Y+
Sbjct: 715 LRHFKDVIVCPVKGTNRRFADLLAGGDYDGDKAIAIWQKEIVSPFKNADLKYS 767
>gi|440493517|gb|ELQ75977.1| RNA-directed RNA polymerase QDE-1 [Trachipleistophora hominis]
Length = 1082
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 32/163 (19%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
+ V V P + P+ N+SNR+LR+F N +RI+F
Sbjct: 831 IRTVHVYPLSIACMYPKNNLSNRILRNF----SNMIRITF-------------------- 866
Query: 203 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS-RYG--LTAAE-I 258
+ + I + NGI I DR + F+A SSSQLR +SAW + R G L ++ +
Sbjct: 867 KNTCDENVMEYIREIMSNGITI-DRPYYFVATSSSQLRSNSAWFISPYRKGNVLVGSDYV 925
Query: 259 REWMGNFREIRNVAKYAARLGQSFSSSKETLSV--HMDEIEII 299
R WMG E N+ KY R+G SS+ V +++E +I+
Sbjct: 926 RNWMGVI-ECDNIGKYMIRVGLGLSSTFSMFEVDDYVEEDDIV 967
>gi|145531992|ref|XP_001451757.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124419423|emb|CAK84360.1| unnamed protein product [Paramecium tetraurelia]
Length = 1257
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 79/404 (19%), Positives = 173/404 (42%), Gaps = 45/404 (11%)
Query: 218 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW-MGNFRE---IRNVAK 273
L G I +++FL +++ +LR + WM ++ E+ + + NF++ ++ A+
Sbjct: 629 LTEGFTICSEQWKFLGWNNKELRSNIIWM----NKVSNKELDNYILANFKQNSTLQQKAE 684
Query: 274 YAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCG 333
+R F L+ ++ II ++ +I + + G++S K+
Sbjct: 685 VKSRFRNFFIDG---LTTEFKQL-IIVVIRNQINENNF---SQFGQISRNLIDKIRE--I 735
Query: 334 LKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELT-KLDVLAWSKYQPCFL 392
+ S ++ + G + ++ + + +S K S ++ ++ ++KY+ FL
Sbjct: 736 FMNQEISVVKVVFNGVQYILQLNNNLKDNIIQLNSQYKIFSSFNDQITIIDYNKYRGAFL 795
Query: 393 NRQLISLLSTLGIWDEIFEKKQREAVRQLDA---ILTDPLKAQEALELMSPG-ENTNILK 448
NR LI L +G+ +++F + + Q+ + + L + L +SP E N++K
Sbjct: 796 NRGLIRLFYQMGVKEDVFIQLLNWHLGQISKAFIVRSVSLDLKSELCGLSPIIEQINVMK 855
Query: 449 ELLICGYKPDAEP-FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQV 507
Y + F+ + + + ++ +L+ K I + + G +D+ LN G+V
Sbjct: 856 R----NYLNEKNCLFIQKVYEKLKLLEIQQLKQKYNILVEKAERLFGVVDQYGILNEGEV 911
Query: 508 F-VQISGAGYRQLHGESSLFS-SSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 565
++ + L G+ + ++ RQ+ L V+ + G ++ N A
Sbjct: 912 ICIRKPNDQVQYLEGKLIVVEDCNQDRQK----TLNVIGLSRLEVIGRLK-----NKTAY 962
Query: 566 HHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ 609
++C++F K P C+ + YFV WD LI +Q
Sbjct: 963 DEYINCIIFSNKQQNSTP-FCTNT------YFVSWDKRLISKRQ 999
>gi|302673317|ref|XP_003026345.1| expressed protein [Schizophyllum commune H4-8]
gi|300100027|gb|EFI91442.1| expressed protein [Schizophyllum commune H4-8]
Length = 984
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 22/157 (14%)
Query: 449 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT-----RIFIPNGRSMMGCL--DETRT 501
ELL G+KP +L + + +K+L++ ++ R+ +P+ R + + D
Sbjct: 507 ELLQAGFKPQECEYLRIKM-----AKVLDMVCQSAVEDYRVPVPDSRGLNAFVVPDPLGV 561
Query: 502 LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 561
LN ++F S S V+G V+V + P P D+R +KAVN
Sbjct: 562 LNEDEIFYMPS----------PSFMDPKEQVMVQAVEGEVIVGRYPIRLPSDLRKVKAVN 611
Query: 562 VPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 598
PALH + ++ P G R + SG D DGDI F+
Sbjct: 612 RPALHQYTNVILVPTVGERSLVSLLSGGDCDGDILFM 648
>gi|299747708|ref|XP_001837206.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298407644|gb|EAU84823.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1221
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 35/177 (19%)
Query: 539 GLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 598
G V+V +NP P DV+ +AV+ P L +VD VV KG R + +G D DGD V
Sbjct: 755 GDVLVTRNPSKLPTDVQKWRAVHRPELRDLVDVVVLSTKGARRAADWLAGGDYDGDKVTV 814
Query: 599 CWDDELI-------PPQQDPPMDYTPAQSMQLD-HDVQIED----------------VEE 634
WD +++ P DPP D + + D ++ + D +++
Sbjct: 815 IWDPKIVDPFKTADPSHGDPPDDAFKEANFEADTTNISVADFLAQNAKAPPVERVRKIQK 874
Query: 635 YFTNYIVNDS-LGIIANAHT----VFADREPRKARSEPCLQLAEKFSIAVDFPKTGV 686
Y + + + S +G +N H + P+ ++LA F + +D KTG+
Sbjct: 875 YLLDAVTDTSAVGKYSNFHDNAVYKYGFAHPK------AIRLAHMFCLTLDGSKTGM 925
>gi|313243221|emb|CBY39877.1| unnamed protein product [Oikopleura dioica]
Length = 265
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 43/194 (22%)
Query: 258 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK----TKYVF 313
I ++ G+F +I+ V KYAARLG S+++ E I D K ++ K F
Sbjct: 26 IWKYFGDFEKIKTVPKYAARLGLLISATRHA--------EFIEDGKWQLEKDIVHHGCNF 77
Query: 314 SDGIGKVSAEFARK--VASKCGLKDNP-----PSAFQIRYGGYKGVVAADPT---SSKKL 363
+DG G++S + A++ + C + PS QIR+ G KG++ DP+ S K +
Sbjct: 78 TDGCGRMSTQLAQRFTLNKHCANRYKHQSFEVPSIVQIRFMGCKGILVHDPSLDFSGKDV 137
Query: 364 SLRDSMRKYESELTK------------------LDVLAWSKYQPCF---LNRQLISLLST 402
LR+S +K+E L + + +P LN+Q + +LS
Sbjct: 138 ILRESQKKFEWNFNTIKGRLKYTEKKQGRTGRLLGICRGGESKPFVFGRLNKQFVLVLSA 197
Query: 403 LGIWDEIFEKKQRE 416
LGI + + Q E
Sbjct: 198 LGIPNTTLLEIQNE 211
>gi|449541618|gb|EMD32601.1| hypothetical protein CERSUDRAFT_126709 [Ceriporiopsis subvermispora
B]
Length = 1473
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 539 GLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 598
G V+V +NPC DV+ + AV+ P L D +V P KG R + +G D+DGD+
Sbjct: 1064 GDVLVYRNPCRVASDVQKVTAVSHPKLTEYTDVIVLPTKGDRSLASLLAGGDVDGDVCVC 1123
Query: 599 CWDDELIPPQQDPP 612
WD E++ Q PP
Sbjct: 1124 IWDPEIVSQFQLPP 1137
>gi|395335049|gb|EJF67425.1| hypothetical protein DICSQDRAFT_177042 [Dichomitus squalens
LYAD-421 SS1]
Length = 1306
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%)
Query: 539 GLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 598
G V++ +NPC P DV+ + AV L D +V P G R + +G D DGD+ V
Sbjct: 871 GEVLIYRNPCRLPSDVQKVTAVQCDVLAAYTDVIVLPTVGARSFASYLAGGDYDGDVAVV 930
Query: 599 CWDDELIPPQQDPPMDYTP 617
+DD L+ PP+ P
Sbjct: 931 IYDDRLVKDFTTPPVTQEP 949
Score = 43.1 bits (100), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 20/169 (11%)
Query: 271 VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY------VFSDGIGKVSAEF 324
++K+A R FS S +S+ ++ + + D + + + +DG G ++
Sbjct: 518 ISKWATRFDLGFSVSVPVISIALENMHFMKDEAVLNDDQDWKPPPECILTDGCGWMNGAA 577
Query: 325 ARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK-----KLSLRDSMRKYESELTKL 379
+A + GL++ P +A Q R+GG KG+ P K+ +RDS K + +L L
Sbjct: 578 LSALAKQIGLEERP-TAVQGRFGGAKGLWILHPREQSSNGVPKIWIRDSQVKVKLDLNNL 636
Query: 380 -------DVLAWSKYQ-PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQ 420
D+LA + P L++ + L+ G+ E F + ++ + +
Sbjct: 637 HPAHTVFDLLAPPRVTLPSRLSKLTVLNLAYNGVPKETFVELMKDTIEE 685
>gi|290980534|ref|XP_002672987.1| predicted protein [Naegleria gruberi]
gi|284086567|gb|EFC40243.1| predicted protein [Naegleria gruberi]
Length = 942
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 143/333 (42%), Gaps = 57/333 (17%)
Query: 340 SAFQIRYGGYKGVVAADPTS-------------SKKLSLRDSMRKYESELT---KLDVLA 383
SA Q+R G KGV+ S + K+ LR+SM K+E + K+D+L
Sbjct: 319 SAMQVRILGAKGVIQKVNKSMWAELLKKHKLPSNTKVILRNSMVKFEGNYSIYNKIDILN 378
Query: 384 WSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR-QLDAILTDPLKAQEALELM--SP 440
++ +NR ++S L + +E EK + QL I+ + + ++
Sbjct: 379 VARVHGGNINRNIMSCLLQMTTNEEEMEKLFKNFYETQLMEIVENKDNPEYLCNVLLSQS 438
Query: 441 GENT--NILKELLICGYKPDAEPFLSMMLQTFRASKLLEL---RTKTRIFIPNGRSMMGC 495
GE + +I ++L++ + D F+S +++ SK + + + P S MG
Sbjct: 439 GETSQESIARDLIMAEHSLD-NYFISSVVKDNIESKFESMVSDKLSMKCKHPGFLSGMGV 497
Query: 496 LDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR 555
DE+ TL + +V + S R L + V+V +NP + GD++
Sbjct: 498 YDESSTLKHDEVHIPCSKL-IRSLD--------------YAKIDKVLVYRNPLAYEGDIQ 542
Query: 556 VLKAVNVPA---LHHMVDCVVF---PQKGMRPHPNEC--SGSDLDGDIYFVCWDDELIP- 606
LK V P L D +VF P P P C +G DLDGD+Y + +D E++
Sbjct: 543 CLKLVKHPPTEFLQSRRDVIVFGHNPNYKKVPEP-LCYMAGGDLDGDLYEIIFDPEIVKL 601
Query: 607 --PQQDPPMDY-----TPAQSMQLDHDVQIEDV 632
P ++Y T + + + + +EDV
Sbjct: 602 FDQNLKPKLNYNDGAATNKVTKTVKNSLSMEDV 634
>gi|313237377|emb|CBY12568.1| unnamed protein product [Oikopleura dioica]
Length = 316
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 22/130 (16%)
Query: 258 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK----TKYVF 313
I ++ G+F +I+ V KYAARLG S+++ E I D K ++ K F
Sbjct: 26 IWKYFGDFEKIKTVPKYAARLGLLISATRHA--------EFIEDGKWQLEKDIVHHGCNF 77
Query: 314 SDGIGKVSAEFARK--VASKCGLKDN-----PPSAFQIRYGGYKGVVAADPT---SSKKL 363
+DG G++S + A++ + C + PS QIR+ G KG++ DP+ S K +
Sbjct: 78 TDGCGRMSTQLAQRFTLNKHCANRYKHQSFEVPSIVQIRFMGCKGILVHDPSLDFSGKDV 137
Query: 364 SLRDSMRKYE 373
LR+S +K+E
Sbjct: 138 ILRESQKKFE 147
>gi|302413491|ref|XP_003004578.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261357154|gb|EEY19582.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 99
Score = 57.4 bits (137), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 565 LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLD 624
L + +C+VF Q G + P++ SG DL+GD Y + WD + P + DY+ +L+
Sbjct: 10 LRDLRNCIVFSQHGDQDLPSQLSGGDLNGDQYNIIWDRQACPKRFFASADYSRITPTELN 69
Query: 625 HDVQIEDVEEYFTNYIVNDSLGIIANAHTV 654
V + +F +++ +D LG+I H +
Sbjct: 70 RQVTRDGKAGFFVDFMKSDMLGMITTEHLI 99
>gi|402224034|gb|EJU04097.1| hypothetical protein DACRYDRAFT_14289 [Dacryopinax sp. DJM-731 SS1]
Length = 1239
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 536 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHP--NECSGSDLDG 593
+V G V++ ++PC P D++++KAV+ P L H D ++ +P ++ +G D DG
Sbjct: 905 VVVGDVLIVRHPCKLPSDIQLVKAVDCPELRHWKDVIITSVDRSQPRSLLSKLAGGDYDG 964
Query: 594 DIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEY 635
D + WD +LI + PA LD +++D EY
Sbjct: 965 DTVVIYWDKDLI-------AGFKPASDECLDPPDRVKDCFEY 999
>gi|389740950|gb|EIM82140.1| hypothetical protein STEHIDRAFT_124929 [Stereum hirsutum FP-91666
SS1]
Length = 982
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 17/172 (9%)
Query: 450 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFV 509
LL G+ P P L+ L+ + + + ++ +P + D LN G++ +
Sbjct: 488 LLDSGFTPQNNPVLASKLEKVIKGAVNKRLARCKVEVPMACTAFIIPDPFGVLNEGEIHI 547
Query: 510 QISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMV 569
+ S ++ G S+ + G V+V +NPC P D++ + AV L
Sbjct: 548 KSSLTNLQRQDGLSTA----------QILGPVLVTRNPCKLPSDIQKVTAVFCAELRDYD 597
Query: 570 DCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI-------PPQQDPPMD 614
D +VF KG R + + D DGD W E++ DPP D
Sbjct: 598 DVIVFSTKGRRSLASLLATGDYDGDKAVAIWQPEIVDDFVNADTKFADPPAD 649
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 11/119 (9%)
Query: 249 SRYGLTAAEIREWMG--NFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDV---- 302
SR+ L+ EI EW N + + +AK+AAR+ S+S L + D+I+ ++
Sbjct: 199 SRWHLSYFEILEWHNPLNLNQNQTMAKWAARIPLGLSNSVPGLVLKKDQIKAEAEIISPF 258
Query: 303 --KIEIGK--TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP 357
+GK ++ +DG G ++ FA K+ S L D PP+A Q+R G KG++ P
Sbjct: 259 HDPATVGKPPSEMEMTDGCGYINL-FAMKMLSSKKLWDKPPTAIQVRVAGAKGLLTIHP 316
>gi|225683475|gb|EEH21759.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 1341
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 107/495 (21%), Positives = 185/495 (37%), Gaps = 69/495 (13%)
Query: 273 KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC 332
K RL S + T+ + +E+ PD V +DG +S ++
Sbjct: 652 KLFQRLALGLSRTLSTVVLRREEVIFCPD------PPGPVMNDGCALMSRSLGLEIKRIL 705
Query: 333 GLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELT--KLDVLAWSKYQPC 390
L + P+ +Q R G KG+ D S+ + R + E+T +L ++ + Q
Sbjct: 706 DL-ETLPACYQGRISGAKGIWMVDRDDSR---FKGGDRDFGLEITESQLKIMV-AATQSF 760
Query: 391 FLNRQLISLLSTLGIWDEIFEKKQREAV-----RQLDAI-LTDPLKAQEALELMS----- 439
LN Q++ +L G+ +K + V L I L++ + ++ L+ M
Sbjct: 761 LLNLQVLKVLQHGGVGHSHIKKLIHQEVSIFYKEFLKVIHLSNGVACRKWLQKMKRFGDD 820
Query: 440 ---------------PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 484
P + LL G+ P P+L+ + + L LR K ++
Sbjct: 821 GYSYKRQTRRIDNFFPSQYVEQAVLLLDSGFLPLKLPYLTQLFRRILKDYLDSLR-KLKV 879
Query: 485 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 544
+ D L+ +V G+ + S+ + + V+VA
Sbjct: 880 SVSQSTYAYCIADPLGVLSPDEVHF-----GFSHKWDDGSVVVGTE-----LHDMNVLVA 929
Query: 545 KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWD--- 601
+ P P D++ +AV L H D +VFP G P + SG D DGD +VCWD
Sbjct: 930 RLPAHLPTDIQKRRAVYKNELRHFKDVIVFPTTGDVPLASLLSGGDYDGDQCWVCWDPII 989
Query: 602 -DELIPPQQDPPMDYTPAQSMQLDHDV---QIEDVEEYFTNYIVNDS----LGIIANAHT 653
E DP + Q + H + Q+ ++++ + ++ LG H
Sbjct: 990 VREFSNSHFDPTTIPSSEQLGLVCHSLPMNQVRSIDQFLAKVFLFNAKPSQLGPCTIEHE 1049
Query: 654 VFADREPRKARSEPCLQLAEKFSIAVDFPKTG--VPAEIPPHLYVKEYPDFMEKPDKPTY 711
F + + LA S VD K G +P + L + P +E+P T+
Sbjct: 1050 TFCYHN-NDLGCKGAVMLAWLLSYLVDSKKAGLELPGKAWRRLRAEYMPVKLEQPAYKTF 1108
Query: 712 E-----SQNVIGKLF 721
+ S N+I L
Sbjct: 1109 DHEKRNSSNIIDYLL 1123
>gi|401882100|gb|EJT46373.1| RNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
2479]
Length = 1106
Score = 56.6 bits (135), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 83/370 (22%), Positives = 143/370 (38%), Gaps = 93/370 (25%)
Query: 312 VFSDGIGKVSAEFARKVASKCGLKDN--PPSAFQIRYGGYKGVVAADPTSSKK-----LS 364
+ SDG G +S +K+ D PP + Q+R GG KGV++ ++ +
Sbjct: 447 ILSDGCGLMS----QKILHHPFFADLRWPPCSVQMRLGGSKGVLSLMSREQEEEYEADVI 502
Query: 365 LRDSMRKYES--------ELTKLDVLAWSKYQ-PCFLNRQLISLLSTLGIWDEIFEKKQR 415
LR SM K +S + LDVL + C L+ + I ++ G+ ++ K
Sbjct: 503 LRPSMIKSKSAAGFSDDPSVLTLDVLKVDGLKVGCNLSSEAIIIMEDRGVPPDVLIAKAE 562
Query: 416 EAVRQLDAILTDPLKAQEALELMSPGENTNILKELLI-----------------C----- 453
++ L L + PGEN + +++ L+ C
Sbjct: 563 LEFEKIRENL---------LPVPHPGENEDDVRQRLLHAVYTLGGVGSEREKRRCRQLGK 613
Query: 454 --------------------------GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 487
G+ PD ++S L+ F L + R + +P
Sbjct: 614 STKVAGLSLESTQQDEHEEDTSVAENGFLPDESVWMSQKLK-FMVRSLTD-RAVSDFKLP 671
Query: 488 NGRSMMGCL--DETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 545
+S+ + D L ++++ S A +L + R V+G V++ +
Sbjct: 672 VDQSLSALIVPDTLGVLKPNEIYIAPSSA---------TLVNPRTMRPMSCVEGDVLIFR 722
Query: 546 NPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECS---GSDLDGDIYFVCWDD 602
+PC P DVR ++AV L H+ DC+V + S G D DGD V WD+
Sbjct: 723 SPCKLPTDVRKMRAVYHSKLKHLQDCIVMSADSAMCTASPASLLAGGDYDGDTATVIWDE 782
Query: 603 ELIPPQQDPP 612
+L+ P ++ P
Sbjct: 783 DLVKPFRNAP 792
>gi|397613827|gb|EJK62448.1| hypothetical protein THAOC_16940 [Thalassiosira oceanica]
Length = 552
Score = 56.2 bits (134), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 32/127 (25%)
Query: 492 MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 551
++G D T ++ +GQVF+ G++ + Q V+V+++PC++
Sbjct: 271 VVGVADPTNSIPFGQVFI----TGFKHIK---------------TYQDKVIVSRSPCINN 311
Query: 552 GDVRVLKAVNVPALHHMVD-----------CVVFPQ--KGMRPHPNECSGSDLDGDIYFV 598
D+R K V D +VFP G + P + + DLDGD YF+
Sbjct: 312 LDMRTAKTVVAKPRKMNHDEWEWLNSLPFGVLVFPNPPTGTQSMPEQIANGDLDGDRYFI 371
Query: 599 CWDDELI 605
CWDD L+
Sbjct: 372 CWDDALV 378
>gi|443921571|gb|ELU41160.1| RdRP domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 1096
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 95/419 (22%), Positives = 161/419 (38%), Gaps = 97/419 (23%)
Query: 269 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK--YVFSDGIGKVSAEFAR 326
+ + K+++R FS+S+ L EI +P+ + GK+ + +DG G ++
Sbjct: 410 QTLNKWSSRFALGFSTSRPGLMFAPSEIYYLPET-VAPGKSSNSAIMTDGAGFINTAAMN 468
Query: 327 KVASKCGLKDNPPSAFQIRYGGYKGVVAADPT--------------SSKKLSLRDSMRKY 372
++ ++ P S Q R+GG KG+ P S K+ L R++
Sbjct: 469 QLTAQMKWSTAPVSV-QARFGGSKGLFILHPNDRLLDNPPRIYIRPSQVKVKLHPDPRRW 527
Query: 373 ESELTKLDVLAWSKYQ-PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA 431
+ LDVL + + Q+I LS G+ I + R + A L +K
Sbjct: 528 CASHRVLDVLTRNTMAVGTQVTDQVIINLSHNGVPTTILDSMTRTYIE--SASLIPYVKE 585
Query: 432 QEALELMSPGENTNILKELLICGYKPD----AEPFLSM---------------------- 465
L+L + ++EL++ G P+ A+ F S+
Sbjct: 586 GRFLQLWETIFTRSKVQELILKGLTPESMARAQGFKSIEKGQDLLDAKFTYQPDPYSGHP 645
Query: 466 ---------MLQTFRASKL------LELRTKTRIFIPNGRSMM-----GCLDETRTLNYG 505
+LQ+ K +E K +F +G+ + G +D L+ G
Sbjct: 646 PSFETQALGLLQSGFDLKFTPLFNRIESIQKMILFGMDGKVLCQLVLNGLVDPLGILDVG 705
Query: 506 QVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLK------- 558
+VF G G R + S S+ V G V+V++NPC+ P D+R +
Sbjct: 706 EVFC---GFG-RPVRDNSGTDIST-------VLGPVLVSRNPCILPSDMRKVSTEGICGE 754
Query: 559 ----------AVNVPALHHM--VDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
AV P L D +VF KG R + +G D DGD + W++ L+
Sbjct: 755 IRAYSCSQVIAVECPELWAAGYTDVIVFSVKGERSLASMLAGGDYDGDTAILIWEEALV 813
>gi|426200996|gb|EKV50919.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1000
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 14/189 (7%)
Query: 449 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL--DETRTLNYGQ 506
ELL G+ P L L +F + +E K + IP S+ G + D L+ G+
Sbjct: 551 ELLQAGFHPRHSAVLKDKL-SFIIEQEIEHCVK-KYAIPLAESLSGFVAPDPLGILDEGE 608
Query: 507 VFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH 566
++ + S SL IV G V++ + P D++ +KAVN P L+
Sbjct: 609 IYFRSS----------ESLLDPRTQLTYDIVTGDVILGRYPVRLASDLQKVKAVNKPELY 658
Query: 567 HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHD 626
D ++ KG R + SG D+DGD F+ + +++ P ++ P P +
Sbjct: 659 RWPDVIIVSTKGKRSLASLLSGGDMDGDTLFMLREPDIVEPFRNQPFVPPPDDLYDANFK 718
Query: 627 VQIEDVEEY 635
+E V ++
Sbjct: 719 KHVETVRQF 727
>gi|392597983|gb|EIW87305.1| hypothetical protein CONPUDRAFT_87147 [Coniophora puteana
RWD-64-598 SS2]
Length = 1075
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 523 SSLFSSSRSRQRF-IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRP 581
S F + RF I++G V+V +NP P DV+ ++AV P L D ++FP G R
Sbjct: 679 SDGFKDPETGARFDILKGDVLVLRNPTRLPSDVQKVRAVTYPELEKYYDVIIFPTCGARS 738
Query: 582 HPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEY 635
+ G GD V WD +L+ P P+ Y Q ++ + +E V ++
Sbjct: 739 LASYLGG----GDTVLVVWDKQLVQPFNSTPL-YEEPQGVRDAFERNVETVRDF 787
>gi|408393216|gb|EKJ72482.1| hypothetical protein FPSE_07363 [Fusarium pseudograminearum CS3096]
Length = 218
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 12/131 (9%)
Query: 188 DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF 247
+++ + DL PR TR + + LR GI + + F +SQL+ S ++
Sbjct: 100 EQLPAPDLQPR-------TRQEVSDYSIRCLRAGITVNGVHYNFYGHINSQLKSRSCFLL 152
Query: 248 ASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIG 307
A+ + +I E + +F +++ V K A +G FSS+K ++ + D E IPDV+
Sbjct: 153 AATKEEISLQI-ESLEDFTKMKTVGKKAKCIGLLFSSAKTAMTTNPDRCEDIPDVE---- 207
Query: 308 KTKYVFSDGIG 318
Y+F+ G+
Sbjct: 208 TVDYIFTMGVA 218
>gi|361066517|gb|AEW07570.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149658|gb|AFG56735.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149660|gb|AFG56736.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149662|gb|AFG56737.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149664|gb|AFG56738.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149666|gb|AFG56739.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149668|gb|AFG56740.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149670|gb|AFG56741.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149672|gb|AFG56742.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149674|gb|AFG56743.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149676|gb|AFG56744.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149678|gb|AFG56745.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149680|gb|AFG56746.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149682|gb|AFG56747.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149684|gb|AFG56748.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149686|gb|AFG56749.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149688|gb|AFG56750.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149690|gb|AFG56751.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
gi|383149692|gb|AFG56752.1| Pinus taeda anonymous locus 0_5352_01 genomic sequence
Length = 67
Score = 55.1 bits (131), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 7/70 (10%)
Query: 781 GIKTEAEILTGSIMKMSK---SFTKRRDA-EAIGMAVRALRKEARAWFKEKSGSDTEDDA 836
G++ EA+I++G+I +S S ++ D E I V++L++EAR WF + S +D +
Sbjct: 1 GVRNEADIISGNIASLSNFVGSNKRKGDIRETILSGVKSLKQEARRWFGDISNTDKQ--- 57
Query: 837 YAKASAWYHV 846
+AKASAWYHV
Sbjct: 58 FAKASAWYHV 67
>gi|392562423|gb|EIW55603.1| hypothetical protein TRAVEDRAFT_128797, partial [Trametes
versicolor FP-101664 SS1]
Length = 894
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 66/170 (38%), Gaps = 18/170 (10%)
Query: 450 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFV 509
L+ G+ P P L L + +TK R +P S D L ++ V
Sbjct: 418 LIDAGFTPQTCPVLRAKLMEVAKKVVTTFKTKYRFAVPMSCSAFIVPDPYGVLGPNEIHV 477
Query: 510 QISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMV 569
+ S + G RQ IV G V+V ++PC P DV+ +KAV L H
Sbjct: 478 KCSRRDFVDQEG----------RQTDIVLGDVLVTRHPCKVPSDVQKVKAVFHERLRHYC 527
Query: 570 DCVVFPQKGM--------RPHPNECSGSDLDGDIYFVCWDDELIPPQQDP 611
+ +V K R + G D DGD V WD L+ ++P
Sbjct: 528 NVIVVSTKSHTYQGVPLDRHLASLTGGGDYDGDTMEVFWDPALVGAFKEP 577
>gi|238580064|ref|XP_002389180.1| hypothetical protein MPER_11728 [Moniliophthora perniciosa FA553]
gi|215451163|gb|EEB90110.1| hypothetical protein MPER_11728 [Moniliophthora perniciosa FA553]
Length = 317
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 629 IEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTG--V 686
++DV ++ YI +D LG+++ + AD+ + C+++A S+AVD+PK+G V
Sbjct: 1 MDDVADFVMEYITHDVLGMVSINWRILADQ--TNIFNPDCMKMAALHSLAVDYPKSGNPV 58
Query: 687 PAEIPPHLYVKEYPDFMEKPDKPT------YESQNVIGKLFRAVKDIAPHT 731
P + P ++ PD+ T Y SQ IGKLFRA+ AP
Sbjct: 59 PIQDIPKRSNEKLPDWYAPETMYTLDTSKYYPSQKAIGKLFRAIALDAPQN 109
>gi|361066837|gb|AEW07730.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
Length = 125
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 807 EAIGMAVRALRKEARAWFKEKSGSDTED-----DAYAKASAWYHVTYHPDYWGCYNQGMN 861
E + A RALR E R F+ K+ +T + + AKASAWYHVTYHP + +
Sbjct: 17 ERLQHAYRALRNEFRLIFQGKTDGETPEPCKRSEYEAKASAWYHVTYHPTWVQKARELTE 76
Query: 862 RDHF-----LSFPWCVYDRLVEIKKDK 883
D + LSFPW D L +IK K
Sbjct: 77 SDGYFTSPLLSFPWISVDYLAQIKLQK 103
>gi|353241158|emb|CCA72990.1| related to qde-1 RNA-dependent RNA polymerase (RdRP) [Piriformospora
indica DSM 11827]
Length = 1766
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 14/176 (7%)
Query: 440 PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL--D 497
P L + L+ G + + + L + AS+ + +R + +P RS G L D
Sbjct: 1246 PASKGQALHDALLAGIEVHKSNYW-LKLWSEMASEAM-MRVVAKFHLPVERSACGFLQPD 1303
Query: 498 ETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 557
T +L G+VF +S++ S ++G V+V ++P L P D+R +
Sbjct: 1304 FTGSLKEGEVF----------FSPKSAMVDSETGLAVQFIEGDVIVGRHPALLPTDMRKV 1353
Query: 558 KAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPM 613
KAV VP L + G P + +G D DGD + W+ ++ P ++ P+
Sbjct: 1354 KAVFVPKLQDFKGILFCSIHGELPLASILAGGDYDGDEGTIIWEQRIVHPFKNAPL 1409
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 97/225 (43%), Gaps = 40/225 (17%)
Query: 265 FREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEF 324
+ E ++++K A RL FS + + + I ++ D++ + G VF+DG G ++
Sbjct: 945 YNEKQDMSKLATRLELGFSDTLPGVLLEPAHIHVVNDIENDDGT---VFTDGAGLMTPSL 1001
Query: 325 ARKVASKCGLKD-------NPPSAFQIRYGGYKGVVAADP--------TSSKKLSLRDSM 369
AR +A K KD + P A+QIR KGVV DP +L L SM
Sbjct: 1002 ARTLARKYPTKDQRDRDALDTPVAYQIRVQTAKGVVLIDPDMLVDRNFDGPHRLLLSKSM 1061
Query: 370 RKYE--------SELTKLDVLAWSKYQPCF-------------LNRQLISLLSTLGIWDE 408
K + + +L + C L+ Q I++LS+ G+ D+
Sbjct: 1062 CKAARGNKPLRPGPVNGMHILDAADCIVCIVKPAPVSASTGVRLSSQFITVLSSCGVPDD 1121
Query: 409 IFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLIC 453
+F + Q +A+ + TD ++ +E + ENT + LI
Sbjct: 1122 VFLQIQHDALEKELEAWTD-IETEEVNKGHRINENTRLRMASLIS 1165
>gi|226287106|gb|EEH42619.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 1366
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 114/516 (22%), Positives = 192/516 (37%), Gaps = 86/516 (16%)
Query: 273 KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC 332
K RL S + T+ + +E+ PD V +DG +S ++
Sbjct: 652 KLFQRLALGLSRTLSTVVLRREEVIFCPD------PPGPVMNDGCALMSRSLGLEIKRIL 705
Query: 333 GLKDNPPSAFQIRYGGYKGVVAADPTSSK-KLSLRD-SMRKYESEL-------------- 376
L + P+ +Q R G KG+ D S+ K RD + ES+L
Sbjct: 706 DL-ETLPACYQGRISGAKGIWMVDRDDSRFKGGDRDFGLEITESQLKISYPHGPPHNPRL 764
Query: 377 ----TKL--DVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAV-----RQLDAI 424
T+L +V+ WS+ P LN Q++ +L G+ +K ++ V L I
Sbjct: 765 VADNTQLTFEVVQWSQPLNPSSLNLQVLKVLQHGGVGHSHIKKLIQQEVSIFYKEFLKVI 824
Query: 425 -LTDPLKAQEALELMS--------------------PGENTNILKELLICGYKPDAEPFL 463
L++ + ++ L+ M P + LL G+ P P+L
Sbjct: 825 HLSNGVACRKWLQKMKRFGDDGYSYKRQTRRIDNFFPSQYVEQAVLLLDSGFLPLKLPYL 884
Query: 464 SMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGES 523
+ + + L LR K ++ + D L+ +V G+ +
Sbjct: 885 TQLFRRILKDYLDSLR-KLKVSVSQSTYAYCIADPLGVLSPDEVHF-----GFSHKWDDG 938
Query: 524 SLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHP 583
S+ + + V+VA+ P P D++ +AV L H D +VFP G P
Sbjct: 939 SVVVGTE-----LHDMNVLVARLPAHLPTDIQKRRAVYKNELRHFKDVIVFPTTGDVPLA 993
Query: 584 NECSGSDLDGDIYFVCWD----DELIPPQQDPPMDYTPAQSMQLDHDV---QIEDVEEYF 636
+ SG D DGD +VCWD E DP + Q + H + Q+ ++++
Sbjct: 994 SLLSGGDYDGDQCWVCWDPIIVREFSNSHFDPTTIPSSEQLGLVCHSLPMNQVRSIDQFL 1053
Query: 637 TNYIVNDS----LGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTG--VPAEI 690
+ ++ LG H F + + LA S VD K G +P +
Sbjct: 1054 AKVFLFNAKPSQLGPCTIEHETFCYHN-NDLGCKGAVMLAWLLSYLVDSKKAGLELPGKA 1112
Query: 691 PPHLYVKEYPDFMEKPDKPTYE-----SQNVIGKLF 721
L + P +E+P T++ S N+I L
Sbjct: 1113 WRRLRAEYMPVKLEQPAYKTFDHEKRNSSNIIDYLL 1148
>gi|383145806|gb|AFG54505.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145808|gb|AFG54506.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145810|gb|AFG54507.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145812|gb|AFG54508.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145814|gb|AFG54509.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145816|gb|AFG54510.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145818|gb|AFG54511.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145822|gb|AFG54513.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145824|gb|AFG54514.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145826|gb|AFG54515.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145828|gb|AFG54516.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145830|gb|AFG54517.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145832|gb|AFG54518.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145834|gb|AFG54519.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145836|gb|AFG54520.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145838|gb|AFG54521.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
gi|383145840|gb|AFG54522.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
Length = 125
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 807 EAIGMAVRALRKEARAWFKEKSGSDTED-----DAYAKASAWYHVTYHPDYWGCYNQGMN 861
E + A RALR E R F+ K+ +T + + AKASAWYHVTYHP + +
Sbjct: 17 ERLQHAYRALRNEFRLIFQGKTDGETPEPCKRSEYEAKASAWYHVTYHPTWVQKARELTE 76
Query: 862 RDHF-----LSFPWCVYDRLVEIKKDK 883
D + LSFPW D L +IK K
Sbjct: 77 LDGYFTSPLLSFPWISVDYLAQIKLQK 103
>gi|403364990|gb|EJY82270.1| RNA-dependent RNA polymerase [Oxytricha trifallax]
Length = 126
Score = 54.3 bits (129), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Query: 276 ARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK 335
AR Q F+ ++ + +IE I D+ + K F+DG G +S E A ++ GL+
Sbjct: 12 ARAAQLFTGTRYICELKKTQIEYIGDI---VNYRKGNFTDGNGCISQELANRINRMYGLE 68
Query: 336 DNPPSAFQIRYGGYKG-VVAADPTSSKKLSLRDSMRKYESELTKLDV 381
D SA+Q R GG KG +V + + +R++M+K+E+ T L++
Sbjct: 69 DC--SAYQFRLGGCKGTLVVNQELQEEVIQIRNTMKKFENSDTSLNI 113
>gi|219117572|ref|XP_002179579.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408632|gb|EEC48565.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|225382106|gb|ACN89265.1| putative RNA-dependent RNA polymerase [Phaeodactylum tricornutum]
Length = 976
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 34/127 (26%)
Query: 492 MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 551
M G D T + +G VFV + S+ Q + L+ V ++PC+ P
Sbjct: 749 MPGYADPTGAIPHGHVFV-----------------TGSKPFQ----ENLLFVTRSPCIFP 787
Query: 552 GDVRVLKAVNVPALHHMVD-----------CVVFPQK--GMRPHPNECSGSDLDGDIYFV 598
D R+L + ++D ++F GM+P P + DLDGD+YFV
Sbjct: 788 SDGRLLPNLVTKPNAMVIDDWNWLNSLPFGALIFADATPGMKPLPAHIANGDLDGDLYFV 847
Query: 599 CWDDELI 605
CWD E++
Sbjct: 848 CWDSEIL 854
>gi|393224586|gb|EJD32918.1| hypothetical protein AURDEDRAFT_177990 [Auricularia delicata
TFB-10046 SS5]
Length = 655
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 16/159 (10%)
Query: 449 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 508
+LL +KP FL L+ S L + +P S D T TL G+V+
Sbjct: 188 DLLKASFKPQDTAFLHRTLKEVIRSNLQRKVEGYHVDLPCSAS-----DPTGTLEPGEVY 242
Query: 509 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 568
+ S S+ Q +++G V+ ++PC+ P D++ ++AVN L
Sbjct: 243 FR-----------PSVPLLDSQGYQFDVLEGDCVMGRHPCMLPSDLQKVRAVNRAELGQY 291
Query: 569 VDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPP 607
D VV +G R + +G D DGD + W ++ P
Sbjct: 292 RDVVVCATRGRRSLASLLAGGDYDGDKVVITWYAPIVTP 330
>gi|328861348|gb|EGG10451.1| hypothetical protein MELLADRAFT_103030 [Melampsora larici-populina
98AG31]
Length = 1075
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 86/165 (52%), Gaps = 16/165 (9%)
Query: 278 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK-D 336
L QS++ KE++ + ++ +++ ++GK + + +DG +S A +++S L+ D
Sbjct: 300 LDQSYTLEKESMGLLLEFCQVLEG---QVGKAE-IMTDGAAAISRVAALQISSANNLQPD 355
Query: 337 NPPSAFQIRYGGYKGVVAADPTS-----SKKLSLRDSMRKYESELTKLDVLAWSKY---- 387
PS +Q R G KG+ DP S + + +RD+ K E + L +Y
Sbjct: 356 ILPSVYQGRIGFAKGLWYLDPNSNPLDTTTWIEIRDTQWKAEPHVGFLYHFNLCRYSVAV 415
Query: 388 QPCFLNRQLISLLSTLGIWDEIFEKKQREAVR-QLDAILT-DPLK 430
L RQ + +LS+ GI +E+FE+ EA+R L+A T DP++
Sbjct: 416 NSTTLGRQNLRVLSSRGIPNEVFEELLEEAIRSSLEAFDTPDPME 460
Score = 47.0 bits (110), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 536 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM-VDCVVFPQKGMRPHPNECSGSDLDGD 594
I+ G ++ ++PC P DVR ++ V L + D +V +G R + SG D DGD
Sbjct: 595 ILAGPALIWRSPCAAPIDVRKIQLVANEHLQRVYFDVIVCSTRGDRAMLSMLSGGDYDGD 654
Query: 595 IYFVCWDDELIPPQQD 610
V WD L+ P Q+
Sbjct: 655 QVSVTWDKRLVDPFQN 670
>gi|156564082|ref|YP_001429828.1| hypothetical DNA-directed RNA polymerase [Bacillus phage
0305phi8-36]
gi|154622779|gb|ABS83659.1| hypothetical DNA-directed RNA polymerase [Bacillus phage
0305phi8-36]
Length = 1218
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 124/543 (22%), Positives = 207/543 (38%), Gaps = 144/543 (26%)
Query: 339 PSAFQIRYGGYKGVVAADPTS------------------------------SKKLSLRDS 368
PSAFQIR+G KG++ P + +K + DS
Sbjct: 287 PSAFQIRFGFTKGLLLVYPHNLETKDCNGRKTRNTGKCMEFFGEKTHKYDFTKDIMFTDS 346
Query: 369 MRK------YESE------LTKLDVLAWSKYQ---PCFLNRQLISLLSTLGIWDEIFEKK 413
M K Y SE KL+++ W K + F+ Q L I + F +
Sbjct: 347 MWKENFNPYYVSEECPSEKRVKLEIVLWQKNRLNDTVFMGYQYWQALRNDKISPKTFAGR 406
Query: 414 QREAVRQL-DAILTDPLKAQEALELMSPGENTN------------ILKELLICGYKPD-- 458
A+++L + I ++ A+ L + G + I K + + PD
Sbjct: 407 ---ALKELKETIFSNADDAKAFLGMYDTGRDAGEYDKKMNAAGGKIQKVIELLTENPDMI 463
Query: 459 AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQ 518
E F+ ++ R + ++ K RI + + E L +G+ V +G Y
Sbjct: 464 GERFVQETIRKTREKYVGDM-AKGRIPVKGANPYIVTCPE---LQFGRKAVLKAGEYY-- 517
Query: 519 LHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 578
+G S F++ RS P +H + VL V+ PA H VF Q
Sbjct: 518 YNGVESRFAAFRS---------------PLIHKSEAVVLNTVDAPAYH------VFNQDI 556
Query: 579 MRPHPNE-----CSGSDLDGDIYFVCWDDELIPP-QQDPPMDYTPAQSMQLDHDVQIEDV 632
+ +P + G+D DGD + +DE+ + PM Y + + + +
Sbjct: 557 LIMNPFDDTLPRMGGADTDGDKVAMVENDEICDAVETGLPMLYDAGFKAGESPNSEAQ-I 615
Query: 633 EEYFTNYIVND---SLGIIANAHTVFAD-------REPRKARSEP-----------CLQL 671
+Y I+N+ S+G I N T + D + RK E L+
Sbjct: 616 FKYDLATIINEDVLSIGEITNMSTAWKDIANNPKIMKERKINGESLTPARIDEIVCILRF 675
Query: 672 AEKFSIAVDFPKTGVPAEIPPHLYVKEYP-----DFMEK--PDKPTYESQNVIGKLFRAV 724
+ +SI DF KTG E+P ++ + E P + M+K +K + S++ +G+LF AV
Sbjct: 676 MQGWSI--DFAKTGFFPEVPEYVEIMEQPHWKQFNVMKKVNKEKNVFVSKSQLGQLFNAV 733
Query: 725 KDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHK---------GNYDYKLGN 775
K+ F +E + D +E F +DDA ++ G Y +L N
Sbjct: 734 KEYMETK-----FKQETKETTVDFTLE---FLADVDDAEVNRIRPIISDLEGAYRKELMN 785
Query: 776 LMD 778
+ D
Sbjct: 786 MRD 788
>gi|392575871|gb|EIW69003.1| hypothetical protein TREMEDRAFT_73994 [Tremella mesenterica DSM 1558]
Length = 1405
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 30/187 (16%)
Query: 537 VQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG--MRPHPNECSGSDLDGD 594
++G V+ ++PC P D+R AV P L H+ DC+V + R + G D DGD
Sbjct: 961 LEGPVLALRSPCKLPSDIRKFTAVYRPELVHLTDCIVMSARDDCRRSPASFLGGGDYDGD 1020
Query: 595 IYFVCWDDELIPPQQ-------DPPMDYTPAQSMQ--------------LDHDVQIEDVE 633
+ WD E++ P + D P D+ ++ + + + + +
Sbjct: 1021 TVQIIWDPEIVGPFKNADDSFADTPQDFEKQNFVKDIVKGHEFLAALDGVSEETLVANYQ 1080
Query: 634 EYFTNYIVNDSL-GIIANAHTVFADREPRKARSEP-CLQLAEKFSIAVDFPKTGVPAEIP 691
+ + +D L G ++ H + R P ++LA F + +D K+G+ ++
Sbjct: 1081 SFLLAALKDDHLAGTYSDLH---GNAGYRLGYDHPLTVRLARMFCLVLDARKSGL--QVL 1135
Query: 692 PHLYVKE 698
PH+ K+
Sbjct: 1136 PHIKAKD 1142
>gi|242048810|ref|XP_002462151.1| hypothetical protein SORBIDRAFT_02g020720 [Sorghum bicolor]
gi|241925528|gb|EER98672.1| hypothetical protein SORBIDRAFT_02g020720 [Sorghum bicolor]
Length = 84
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 697 KEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFE 756
+E+PDFME+ ++P Y S +V+ KL+RA +T L YDPD+EV GF+
Sbjct: 8 QEFPDFMEQWERPMYVSNSVLDKLYRAALWHEENTEA--LLPVPPPSSMYDPDVEVAGFD 65
Query: 757 DHIDDAIYHKGNYDYKLGN 775
H+D A Y +LG
Sbjct: 66 KHLDTAEKQYRAYAERLGT 84
>gi|383145820|gb|AFG54512.1| Pinus taeda anonymous locus 0_10048_01 genomic sequence
Length = 125
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 807 EAIGMAVRALRKEARAWFKEKSGSDTED-----DAYAKASAWYHVTYHPDYWGCYNQGMN 861
E + A RALR E R F+ K+ + + + AKASAWYHVTYHP + +
Sbjct: 17 ERLQHAYRALRNEFRLIFQGKTDGEIPEPCKRSEYEAKASAWYHVTYHPTWVQKARELTE 76
Query: 862 RDHF-----LSFPWCVYDRLVEIKKDK 883
D + LSFPW D L +IK K
Sbjct: 77 LDGYFTSPLLSFPWISVDYLAQIKLQK 103
>gi|242208189|ref|XP_002469946.1| predicted protein [Postia placenta Mad-698-R]
gi|220731008|gb|EED84857.1| predicted protein [Postia placenta Mad-698-R]
Length = 1427
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 67/164 (40%), Gaps = 18/164 (10%)
Query: 450 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFV 509
LL G+KPD P L+ L+ + + R+ +P + D L GQV +
Sbjct: 641 LLDSGFKPDTCPVLAAKLKEVVKRAINSYVRRYRVDVPQSCTAYIVPDPLGVLEPGQVHI 700
Query: 510 QISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMV 569
+ S G R IV G V+V ++PC P DV+ + AV L V
Sbjct: 701 KSSRRNLVDQDG----------RPTDIVLGEVLVTRHPCKVPTDVQKVTAVFNQKLSSYV 750
Query: 570 DCVVFP-------QKGMRPHPNECS-GSDLDGDIYFVCWDDELI 605
D +V +K M H C+ G D DGD W+ +L+
Sbjct: 751 DVIVVSIKDHVSNKKLMNRHLASCTGGGDYDGDTMEAFWNSDLV 794
>gi|295666726|ref|XP_002793913.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226277566|gb|EEH33132.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1176
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 541 VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCW 600
V+VA+ P P D++ +AV L H D ++FP G P + SG D DGD +VCW
Sbjct: 791 VLVARLPAHLPTDIQKRRAVYKNELRHFKDVIIFPTTGDVPLASLLSGGDYDGDQCWVCW 850
Query: 601 D 601
D
Sbjct: 851 D 851
>gi|403414080|emb|CCM00780.1| predicted protein [Fibroporia radiculosa]
Length = 1620
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 21/203 (10%)
Query: 450 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFV 509
LL G+ P P L+ L+ + + K +I + S + D L G++ V
Sbjct: 1110 LLDAGFNPKTCPVLAAKLKEVVKRVITTMVRKYQIEVSQSLSAVIVPDPCNVLRPGEIHV 1169
Query: 510 QISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMV 569
+ S G ++ I+ G V+V ++PC P DV+ ++AV L + V
Sbjct: 1170 KSSQRNLVDQDG----------KRTDIILGDVLVTRHPCKVPTDVQKVQAVYHEKLRNYV 1219
Query: 570 DCVV-------FPQKGMRPHPNECS-GSDLDGDIYFVCWDDELIPP--QQDPPMDYTPAQ 619
D +V + K + H C+ G D DGD+ V W EL+ DP P
Sbjct: 1220 DVIVVSTKDHIYGNKLLNRHLASCTGGGDYDGDMMEVFWKRELVSAFVNADPKFLQEPP- 1278
Query: 620 SMQLDHDVQIEDVEEYFTNYIVN 642
+Q E V +Y + +N
Sbjct: 1279 GVQFCLSKNTETVAQYLAHTPLN 1301
Score = 43.9 bits (102), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 27/168 (16%)
Query: 269 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEI----GK--TKYVFSDGIGKVSA 322
+ + K+AAR S+S V EI D+ GK + + +DG G +S
Sbjct: 840 QTMVKWAARFALGLSNSVPGARVRPSEIAFEDDIICAAWDGNGKAPNEQIMTDGCGLIST 899
Query: 323 EFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-------TSSKKLSLRDSMRKYESE 375
+ + +A + GL + P+A Q+R G KG++ A P SS ++ LR S K +
Sbjct: 900 DILQLIADRLGLS-SVPTAIQMRVCGSKGILLAHPHPQRPSLASSPRVWLRPSQVKIKHS 958
Query: 376 LTK------------LDVLAWSKY-QPCFLNRQLISLLSTLGIWDEIF 410
T +DVL S+ P L+ + I L+ G+ ++F
Sbjct: 959 TTNQLPANLDPALCTIDVLRPSRLTSPVRLSTETIINLAENGVPTDVF 1006
>gi|255546343|ref|XP_002514231.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223546687|gb|EEF48185.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
Length = 114
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 537 VQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD----CVVFPQKGMRPHPNECSGSDLD 592
+ G V+V +NP LH GD+ VLKA V AL V + FP KG + +E +G D +
Sbjct: 28 ISGKVLVYRNPGLHFGDIHVLKATYVKALEDFVGNAKYAIFFPCKGPQSLADEIAGGDFN 87
Query: 593 GDIYFVCWDDEL 604
D+YFV + E+
Sbjct: 88 NDMYFVSRNPEV 99
>gi|327354916|gb|EGE83773.1| hypothetical protein BDDG_06718 [Ajellomyces dermatitidis ATCC
18188]
Length = 1096
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 12/156 (7%)
Query: 541 VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCW 600
+++A+ P D++ ++V AL H D +VFP G P + SG D DGD +VCW
Sbjct: 666 ILLARLPAHLSTDIQKRRSVYKNALRHFKDVIVFPTTGDTPLASLLSGGDYDGDQCWVCW 725
Query: 601 DDELIPPQQDP---PMDYTPAQSMQL-DHDVQIED---VEEYFTNY----IVNDSLGIIA 649
D ++ ++ P +S+ L DH +I + E++ N + + LG
Sbjct: 726 DPIIVREFKNTEFDPKTVPSEESLGLRDHSTRISEYVSTEKFLANAFKFNLKSSKLGPCT 785
Query: 650 NAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTG 685
H F + S ++LA S VD K+G
Sbjct: 786 VEHETFCYHQ-NNINSSLGVKLAWLLSYLVDSRKSG 820
>gi|409052182|gb|EKM61658.1| hypothetical protein PHACADRAFT_135496 [Phanerochaete carnosa
HHB-10118-sp]
Length = 913
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 536 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDI 595
++ G ++ +NP DVR ++AV+VP L D +V P KG P+ +G D+DGD
Sbjct: 510 LMLGDCLLYRNPARLASDVRKVRAVDVPELVLYKDVIVVPCKGPVSLPSMLAGGDVDGDT 569
Query: 596 YFVCWDDELIPP 607
WD L+ P
Sbjct: 570 AVCIWDPALVKP 581
>gi|383127813|gb|AFG44556.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127815|gb|AFG44557.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127817|gb|AFG44558.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127819|gb|AFG44559.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127821|gb|AFG44560.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127823|gb|AFG44561.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
gi|383127825|gb|AFG44562.1| Pinus taeda anonymous locus 0_3851_01 genomic sequence
Length = 114
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 807 EAIGMAVRALRKEARAWFKEKSGSDT-----EDDAYAKASAWYHVTYHPDYWGCYNQ--- 858
E + A +ALRKE R F+ S+ + D AKASAWYHV YHP + +
Sbjct: 5 ERLQHAYKALRKEFRLVFEGTKDSENPEPRKQSDYEAKASAWYHVAYHPTWVQKTMELIE 64
Query: 859 --GMNRDHFLSFPWCVYDRLVEIKKDK 883
G + LSFPW D L +IK K
Sbjct: 65 PNGYHSAPLLSFPWISVDYLAQIKLQK 91
>gi|341039071|gb|EGS24063.1| hypothetical protein CTHT_0007750 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 392
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 26/157 (16%)
Query: 553 DVRVLK-AVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI--PPQQ 609
++R+LK +P + V + G SG DLDGD++ V WD L P+
Sbjct: 75 ELRLLKHKARIPVPKGVTLFCVMDKTGFLQGGPSLSGGDLDGDLFHVIWDPALFNAKPKL 134
Query: 610 DP--PMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEP 667
+ P DY ++L+ ++ I D+ +F ++ T+ AD +
Sbjct: 135 ETFEPADYPRIPPLELEGEITIRDMANFFADF------------KTILADPD-------- 174
Query: 668 CLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEY-PDFM 703
C++LA+ S AV+ KTG P ++ + + PDF
Sbjct: 175 CMKLAKLASSAVNLSKTGRPVDMTQLPKCRRWRPDFF 211
>gi|395331410|gb|EJF63791.1| hypothetical protein DICSQDRAFT_55194 [Dichomitus squalens LYAD-421
SS1]
Length = 1069
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 73/195 (37%), Gaps = 25/195 (12%)
Query: 419 RQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLEL 478
+Q A DP+ SP L+ G++PD L L+ +
Sbjct: 545 QQSSAWWEDPISG-------SPSSLEETCMTLIDSGFRPDDCAVLGAKLREVAKKVVKTF 597
Query: 479 RTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ 538
+TK R +P S D L +V V+ S G R +V
Sbjct: 598 QTKYRFAVPMSCSAFIVPDPYGVLKANEVHVRSSRRNLPDHQG----------RLTDLVL 647
Query: 539 GLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG--MRPHP------NECSGSD 590
G V+V ++PC P DV+ +KAV L H D +V + R P + G D
Sbjct: 648 GDVLVTRHPCKVPSDVQKVKAVFHERLRHYCDVIVVSTESQTFRGEPLNRHLASLTGGGD 707
Query: 591 LDGDIYFVCWDDELI 605
DGD V WD +++
Sbjct: 708 YDGDTMEVFWDPDIV 722
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 9/153 (5%)
Query: 269 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEI--GKTK----YVFSDGIGKVSA 322
+ +AK+AAR S+S L + D ++ + D+ + GK K +DG G +
Sbjct: 303 QTMAKWAARFALPLSNSMPGLRLKHDNVKFVDDIICDAFEGKGKPPSEMQMTDGCGFANR 362
Query: 323 EFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTK--LD 380
R + K + P+A Q R GG KG++ L L + +++ K LD
Sbjct: 363 AVMRMLHDKFPAWQDEPTAIQCRIGGAKGLLLVRHDLYSSLPLEQCILPSDTDPAKLTLD 422
Query: 381 VLAWSKYQ-PCFLNRQLISLLSTLGIWDEIFEK 412
VL S+ + P L+ + I+ + + E F K
Sbjct: 423 VLRASRMKCPARLSTETITNFAENDVPYECFSK 455
>gi|451994086|gb|EMD86557.1| hypothetical protein COCHEDRAFT_1034369 [Cochliobolus
heterostrophus C5]
Length = 110
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 460 EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL--NYGQVFVQISGAGYR 517
EPF+ +L +RA + L+ K RI I NG ++GC+DET+ L ++ +
Sbjct: 14 EPFIMSLLALWRACTIKNLKEKARIAIDNGAFLLGCVDETKKLKEHFNDPRSRRDATRDG 73
Query: 518 QLHGESSLF---SSSRSRQRF-IVQGLVVVAKNPCLH 550
+L +F S+ S+ + I++G+ +VA+NP LH
Sbjct: 74 KLATLPEIFLQVSNPNSKGHYIIIEGICIVARNPSLH 110
>gi|239612171|gb|EEQ89158.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis ER-3]
Length = 1382
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 12/156 (7%)
Query: 541 VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCW 600
+++A+ P D++ ++V AL H D +VFP G P + SG D DGD +VCW
Sbjct: 952 ILLARLPAHLSTDIQKRRSVYKNALRHFKDVIVFPTTGDTPLASLLSGGDYDGDQCWVCW 1011
Query: 601 DDELIPPQQDP---PMDYTPAQSMQL-DHDVQIED---VEEYFTNY----IVNDSLGIIA 649
D ++ ++ P +S+ L DH +I + E++ N + + LG
Sbjct: 1012 DPIIVREFKNTEFDPKTVPSEESLGLRDHSTRISEYVSTEKFLANAFKFNLKSSKLGPCT 1071
Query: 650 NAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTG 685
H F + S ++LA S VD K+G
Sbjct: 1072 VEHETFCYHQ-NNINSSLGVKLAWLLSYLVDSRKSG 1106
>gi|261202284|ref|XP_002628356.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
gi|239590453|gb|EEQ73034.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
Length = 1382
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 12/156 (7%)
Query: 541 VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCW 600
+++A+ P D++ ++V AL H D +VFP G P + SG D DGD +VCW
Sbjct: 952 ILLARLPAHLSTDIQKRRSVYKNALRHFKDVIVFPTTGDTPLASLLSGGDYDGDQCWVCW 1011
Query: 601 DDELIPPQQDP---PMDYTPAQSMQL-DHDVQIED---VEEYFTNY----IVNDSLGIIA 649
D ++ ++ P +S+ L DH +I + E++ N + + LG
Sbjct: 1012 DPIIVREFKNTEFDPKTVPSEESLGLRDHSTRISEYVSTEKFLANAFKFNLKSSKLGPCT 1071
Query: 650 NAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTG 685
H F + S ++LA S VD K+G
Sbjct: 1072 VEHETFCYHQ-NNINSSLGVKLAWLLSYLVDSRKSG 1106
>gi|154285562|ref|XP_001543576.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150407217|gb|EDN02758.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1055
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 541 VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCW 600
V++A+ P D++ K+V L HM D +VFP G P + SG D DGD +VCW
Sbjct: 619 VLLARLPAHLATDIQKRKSVYKNELRHMKDVIVFPTTGDTPLASLLSGGDYDGDQCWVCW 678
Query: 601 D 601
D
Sbjct: 679 D 679
>gi|449668207|ref|XP_002154892.2| PREDICTED: uncharacterized protein LOC100214913 [Hydra
magnipapillata]
Length = 712
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 29/204 (14%)
Query: 696 VKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLF--TKEVARRSYDPDM--- 750
+K+Y + + + + +E + KL A+ TS + +F T+ VAR Y+ D+
Sbjct: 451 IKDYVNEVSQAYQNVHEDSVRLKKL-SAILGSLEKTSKVLIFVHTRNVARALYNFDLTSK 509
Query: 751 -----------EVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTG-SIMKMSK 798
+ G+ ++++DA+ Y + + +M ++ +K EA+++ G + S
Sbjct: 510 VNIEKGSGSSLRIPGYYEYLEDALEVYSCYAHNIKAIMSWFDLKVEADVVLGCATYNWST 569
Query: 799 SFT--KRRDAEAIGMAVRALRKEARAWFKEKSGSDTED-DAYAKASAWYHVTYHPDYWGC 855
F K + +++I + L K+ F+E S+ +D KA AWY++ Y
Sbjct: 570 HFEADKGKASKSIAECYKQLVKK----FREIFFSNIDDVSKMKKACAWYNLVYD----NA 621
Query: 856 YNQGMNRDHFLSFPWCVYDRLVEI 879
++ +LSFPW + D L E+
Sbjct: 622 IKIVGHKKKYLSFPWVISDVLCEL 645
>gi|290994060|ref|XP_002679650.1| predicted protein [Naegleria gruberi]
gi|284093268|gb|EFC46906.1| predicted protein [Naegleria gruberi]
Length = 1124
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 106/439 (24%), Positives = 182/439 (41%), Gaps = 76/439 (17%)
Query: 228 KFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREI------RNVAKYAARLGQS 281
+++F S+S + +A +R L A+I + +G+F E + ++ A LG+S
Sbjct: 449 EYKFFGTSNSGINGHTALFIDTR--LNFAKIHDLLGDFSECAKAGPRKAFSRIALALGKS 506
Query: 282 FSS----SKETLSVHMDEIEIIPDVKIEIGKTKY--VFSDGIGKVSAEFARKVASKCGLK 335
F S KE L V DE E PD + + + + + I E RK ++
Sbjct: 507 FQSLVELKKEELWVLYDE-EDYPDGAGFMHEDYFQDILRNTICTPYFE-TRKNTTEAVFM 564
Query: 336 D---NPPSAFQIRYGGYKGVVAADPTS-------------SKKLSLRDSMRKY--ESELT 377
D A Q R G KGV + P + K R SM K+ SE+
Sbjct: 565 DCKIEEIVAMQFRALGMKGVFQSIPDEYWKELQTRHGFPDTVKCVARPSMIKFMGNSEVY 624
Query: 378 K-LDVLAWSKYQPCFLNRQLISLL----STLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 432
+ DVL S+ Q +NR +S + + ++F K E ++ IL
Sbjct: 625 RHFDVLNVSRIQGGSINRTFMSCMLRRTTNKEAMQQLFVKMLDEYIKSESNILDTKFLYN 684
Query: 433 EAL--ELMSPGENT-NILKELLICGYKPDAEPF--------LSMMLQTFRASKLLELRTK 481
L E+ G++ +K LL+ G+ + PF + Q+ +KL L+ K
Sbjct: 685 SLLSNEVFDNGDSVYRTIKNLLLAGFGME-NPFVYKYIKKRIKARFQSMIDNKLC-LKMK 742
Query: 482 TRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLV 541
++ + ++MG +DE+ LN +V++ L + L R + ++ V
Sbjct: 743 SKFSV----TLMGVIDESGELNADEVYIPC-------LKLQEQLM-----RDYYKLKE-V 785
Query: 542 VVAKNPCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 598
+V ++P + GD+ LK P L + +VFP+ P++ DGD Y V
Sbjct: 786 IVYRHPLAYEGDIAKLKLRKDPCNEFLASRSNVIVFPKVFKEKSPHQYLAG--DGDAYEV 843
Query: 599 CWDDELIP--PQQDPPMDY 615
+D E++ + P+DY
Sbjct: 844 VFDMEILKLFDKHPKPIDY 862
>gi|353241842|emb|CCA73629.1| hypothetical protein PIIN_07582 [Piriformospora indica DSM 11827]
Length = 1021
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 537 VQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIY 596
+G V++ ++P L P D++ ++ N+ +L ++ +G RP + SG D DGD
Sbjct: 629 TKGEVLIGRHPALLPTDIQKVRLANITSLKQKRGLIICSTQGSRPLADLLSGGDYDGDEA 688
Query: 597 FVCWDDELIPPQQ--DPPMDYTPAQ 619
+ WD ++ Q D + + PA+
Sbjct: 689 IIIWDRNVVNAFQNADTQLSFKPAE 713
Score = 47.4 bits (111), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 264 NFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAE 323
+F + + + K A RL S + V M +E +I + YVF+DG G+VS
Sbjct: 282 SFNKEQPICKLATRLHLGVSDTSPGPLVEMIYVED------DIKRDGYVFTDGSGEVSGP 335
Query: 324 FARKVASKCGLKDNPPSAFQIRYGGYKGVV 353
R+ +KC N SA+QIR KG+V
Sbjct: 336 LLRRFRAKCPQARNEASAYQIRISTAKGIV 365
>gi|328855319|gb|EGG04446.1| hypothetical protein MELLADRAFT_117081 [Melampsora larici-populina
98AG31]
Length = 789
Score = 48.1 bits (113), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 82/355 (23%), Positives = 137/355 (38%), Gaps = 53/355 (14%)
Query: 304 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL 363
+++ V +DG +S A+K+ G+ + PSAFQ R KGV L
Sbjct: 334 VQMSTAPAVMTDGAAAISKFAAQKIKDSLGM-NFLPSAFQARIMKAKGVWY--------L 384
Query: 364 SLRDSMRKYESELTKLDVLAW-----SKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAV 418
S DS+ + E + W S+++ + + L + A
Sbjct: 385 SSHDSIEEDEESM-------WIEIRDSQWKADVSYGHDVDIPFNLVRSSRHAKTGHVLAS 437
Query: 419 RQLD-AILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLE 477
R++ + TD LK LEL++ + L L++ Y + + + T L E
Sbjct: 438 RKVPVSTFTDLLK----LELLTVFNSLTDLNHLMVTSY---LDNHAEVHINTEDVEDLSE 490
Query: 478 LRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIV 537
+R + S+ D T TL G+VF+Q+S + ++
Sbjct: 491 --RLSRRPLDAITSVYAMPDPTGTLKEGEVFLQLS-----------HFVDQDTALPIQVL 537
Query: 538 QGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYF 597
+G +VA++PC+HP D R + AV L D +V G R + SG GD
Sbjct: 538 RGECIVARSPCVHPCDARKVTAVANQNLVRYDDVLVCSVLGERSLLDYLSG----GDTVT 593
Query: 598 VCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAH 652
V WD + P + A + ++++ E+YF +N NAH
Sbjct: 594 VIWDPHITEP-------FVNADVGECISQKELKEYEKYFEVSTINSISNSKDNAH 641
>gi|409047033|gb|EKM56512.1| hypothetical protein PHACADRAFT_118286 [Phanerochaete carnosa
HHB-10118-sp]
Length = 965
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Query: 537 VQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIY 596
V G V++ +NP P DV+ ++AV P +D ++ P KG R + +G D DGD+
Sbjct: 576 VVGDVLIYRNPARVPSDVQKVRAVCRPEYADYLDVIILPTKGRRSLASLLAGGDYDGDVA 635
Query: 597 FVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFA 656
+D +++ + P P + E+YF + D + +A+ + +
Sbjct: 636 TCIFDPQIVGDFRQPVFTAEPPNFL-----------EKYFES---QDKIPTVASVVRMMS 681
Query: 657 DREPRKAR 664
DR +R
Sbjct: 682 DRPADASR 689
Score = 42.7 bits (99), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 250 RYGLTAAEIREWMG--NFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIG 307
RY L ++ EW + + +N++KYAAR + S+S L I +I D++
Sbjct: 210 RYSLE--KLIEWYNPLDLNDKQNLSKYAARSDLALSTSSPVLEFDPRNIYMINDIEAPHT 267
Query: 308 KTKY----VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAAD-----PT 358
K +F+DG G ++ +V G +PP+A Q R G KGV PT
Sbjct: 268 GGKVPPEKIFTDGCGFMNGAALMRVGKWIG-SGSPPTAVQGRILGSKGVWLLHPDDRAPT 326
Query: 359 SSKKLSLRDSMRK 371
+ ++ +R S RK
Sbjct: 327 AEPRIWIRPSQRK 339
>gi|403159921|ref|XP_003890550.1| hypothetical protein PGTG_20838 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169335|gb|EHS63855.1| hypothetical protein PGTG_20838 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1158
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 109/469 (23%), Positives = 168/469 (35%), Gaps = 102/469 (21%)
Query: 307 GKTKYVFSDGIGKVSAEFARKVASKCGLK-DNPPSAFQIRYGGYKGVVAADPTSSKK--- 362
GK++ + +DG G +S A +V G K D PSA+Q R G KG+ P S
Sbjct: 385 GKSE-IMTDGAGIISRAAATRVCESLGRKYDTLPSAYQARIGFSKGLWVVPPEYSAHNIT 443
Query: 363 --LSLRDSMRKYES--------ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEK 412
+ +RDS K E L ++ S L +QL+ +LS G+ ++
Sbjct: 444 PWIEIRDSQWKAEPIEGYTFHFNLCRISRSVTSSS----LGKQLLPVLSARGVQNKTVCS 499
Query: 413 KQREAVRQLDAILT--DPLKAQEALELMSPGENTN--ILKELLICGYKPDA--------- 459
E + + L DPL+ E L + T IL + + P A
Sbjct: 500 ALEEHITSTISDLNSADPLRLAEVLSRSGGLKQTRRAILDRISNVQHNPTAYRTYGNDPV 559
Query: 460 ------------------------------EPFLSMMLQTFR------ASKLLELR---- 479
E +SM+ F +KL +++
Sbjct: 560 APNIDPEYGESWAFTTDGLHAMSLVPFHAEEQVISMLAAGFEPRNRYIVTKLRKIKEDKI 619
Query: 480 ---TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFI 536
K R+ I + D T TL + F+Q FSS Q I
Sbjct: 620 SNAIKFRVPIAQSTYLYVMPDPTGTLKEDEAFLQ---------------FSSFEDYQTGI 664
Query: 537 -VQGLV---VVAKNPCLHPGDVRVLKAVNVPALHHMV-DCVVFPQKGMRPHPNECSGSDL 591
+ LV +V+++PC+ D R + V+ L + D +V +G + SG D
Sbjct: 665 KLSNLVCPAIVSRSPCVASIDARKINLVDNDILRDVYYDVLVCSIQGKTSLLSLLSGGDY 724
Query: 592 DGDIYFVCWDDELIPPQQDPPMDYTP-AQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIAN 650
DGD V WD L+ + +D P + +L VQ+ VEE N+ +
Sbjct: 725 DGDQVMVIWDPVLVQQFHNVDLDKHPRIVTDELFEPVQLGTVEECLLEAYENNPEEFVKT 784
Query: 651 AHTVFADR--EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVK 697
A + A P A S ++ +D P T E+ YVK
Sbjct: 785 AQLIQAAGLFTPNDAGSYSIKHTMAEYLFGLDNPLTQKLGEV----YVK 829
>gi|290977359|ref|XP_002671405.1| predicted protein [Naegleria gruberi]
gi|284084974|gb|EFC38661.1| predicted protein [Naegleria gruberi]
Length = 283
Score = 47.8 bits (112), Expect = 0.030, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 554 VRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
+R+ +AV L H+ D VVF G P+ SG+DLDGD +++ WD EL+
Sbjct: 1 MRLFQAVKKDCLTHLKDVVVFSSLGPEFVPSLISGADLDGDHFYIFWDSELV 52
>gi|302413493|ref|XP_003004579.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261357155|gb|EEY19583.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 139
Score = 47.4 bits (111), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 33/167 (19%)
Query: 392 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL 451
LNRQ+I +L +G+ DE F +Q+ + + A+ NT
Sbjct: 3 LNRQMIKILEDMGVRDEWFFSQQKRELERRHAVTAGAW-------------NTGAF---- 45
Query: 452 ICGYKPDAEPFLSMMLQTFRASKLLELRT---KTRIFIPNGRSMMGCLDETRTLNYGQVF 508
C K A L+ + R++ L ELR K RI +P G ++ G +DE+ L+ G+V
Sbjct: 46 -CSSKASAR-HLTSRHSSRRSTMLKELRLLKFKARIPMPQGVTLFGIMDESGFLSEGEVS 103
Query: 509 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR 555
V S ++ S + G + V ++P L+PGD++
Sbjct: 104 VCY-----------DSCYNGSLPIDSTLNDGNIPVIRSPALYPGDIQ 139
>gi|392570629|gb|EIW63801.1| hypothetical protein TRAVEDRAFT_138069 [Trametes versicolor
FP-101664 SS1]
Length = 1030
Score = 47.0 bits (110), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 10/174 (5%)
Query: 445 NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNY 504
++ +LL G+ P P L L+ ++ + ++ + IP D L
Sbjct: 533 GVVMDLLQAGFHPLRLPALYEKLRKITSNVIEDIIRDFHVSIPLSAEAFIVPDPYGVLKP 592
Query: 505 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 564
G++ + S L S+ I+ G V++ +NP P DV+ + AV
Sbjct: 593 GEIHFRSS----------KDLKSALEDLNPNILLGDVLIYRNPNRLPSDVQKVTAVQHEL 642
Query: 565 LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPA 618
L D +V P +G + +G D DGD+ +D L+ + P+ PA
Sbjct: 643 LADYADVIVLPSRGPCSFASMLAGGDYDGDVCVCIYDPRLVRDFNNSPLSQAPA 696
>gi|361124327|gb|EHK96429.1| putative RNA-dependent RNA polymerase 1 [Glarea lozoyensis 74030]
Length = 900
Score = 47.0 bits (110), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 541 VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCW 600
V+VA++P D++ +KAV L + D +VF KG + SG D DGD+ ++CW
Sbjct: 486 VLVARSPAHFVSDIQKVKAVAKVELIGLKDVIVFSTKGNPSLAAKLSGGDYDGDLAWLCW 545
Query: 601 DDELI 605
+ ++
Sbjct: 546 EPSIV 550
>gi|390599418|gb|EIN08814.1| hypothetical protein PUNSTDRAFT_44349 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 1065
Score = 46.6 bits (109), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 93/231 (40%), Gaps = 40/231 (17%)
Query: 439 SPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRT-KTRIFIPNGRSMMGCLD 497
SP + LL G+ P S + R+ + ++ + +I +P + D
Sbjct: 648 SPSTLEETVMALLDSGFTPACGVLASKLDNVIRSILMNFVKPPRFKIELPMSCTAFITPD 707
Query: 498 ETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 557
T TL+ G++F++ S L G ++ ++ G+V ++
Sbjct: 708 PTGTLDPGEIFIRSSHDNVIGLDG---------------IKTDTII--------GEV-LV 743
Query: 558 KAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQ-------D 610
KAV PALH + +V KG R + +G D DGD FV WD ++ P + D
Sbjct: 744 KAVYRPALHRYTNQIVISVKGDRSLASILAGGDYDGDKCFVTWDPAIVEPFKNAHLRYAD 803
Query: 611 PP------MDYTPAQSMQLDHDVQIEDVEEYFTNYIVN-DSLGIIANAHTV 654
PP + P +L+ I D + Y + D +GI + HT+
Sbjct: 804 PPDGFEDAFEKNPISVAELE-PASIRDWQRYLLALDSHRDMVGIFSKRHTL 853
>gi|242053115|ref|XP_002455703.1| hypothetical protein SORBIDRAFT_03g022063 [Sorghum bicolor]
gi|241927678|gb|EES00823.1| hypothetical protein SORBIDRAFT_03g022063 [Sorghum bicolor]
Length = 70
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 746 YDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSI 793
+DP++EV F+ H+D Y +LG LM YY K E EILTG+I
Sbjct: 23 FDPNVEVVSFDKHLDTTEEQYRAYVERLGTLMTYYSTKREDEILTGNI 70
>gi|393904651|gb|EJD73759.1| hypothetical protein LOAG_18838 [Loa loa]
Length = 543
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 138 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 197
+G V +V +TP+RV PE+ + NRVLR F +D + LRI F D+ D +P
Sbjct: 459 EGYQRVRKVVITPTRVLLVVPELLMGNRVLRTFDKDGNGALRIQFRDD--------DGTP 510
Query: 198 RGSSATDITRTRIYTRILSTLRNGILIG 225
+ T + I T +TL GI IG
Sbjct: 511 LRLNTTGL--FLIQTTTFNTLSRGIYIG 536
>gi|453080015|gb|EMF08067.1| hypothetical protein SEPMUDRAFT_152361 [Mycosphaerella populorum
SO2202]
Length = 396
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 14/165 (8%)
Query: 690 IPPHLYVKEYPDFMEKPDKP---TYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSY 746
+P L ++ +P + E +K Y S V+GKL+ VK H + F + + +
Sbjct: 1 MPADLRIQRWPHWSEPRNKAKSKVYTSHRVLGKLYDEVKKEPFHAAWDMPFDERILT-AL 59
Query: 747 DPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDA 806
+P ++ ++DA K YD + +M +GIKTE E+ T +++ + + A
Sbjct: 60 EPSHQM------LNDAKEIKALYDEAIRRIMAQHGIKTEFEVFTTFVLEHHQEIGDYKFA 113
Query: 807 EAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKAS----AWYHVT 847
E +G L+++ + ++G++ D + K A Y VT
Sbjct: 114 ETMGEMTANLKQQHQELCYNRAGTNAADRDWDKMKPFIVAMYKVT 158
>gi|297818820|ref|XP_002877293.1| hypothetical protein ARALYDRAFT_905454 [Arabidopsis lyrata subsp.
lyrata]
gi|297323131|gb|EFH53552.1| hypothetical protein ARALYDRAFT_905454 [Arabidopsis lyrata subsp.
lyrata]
Length = 63
Score = 44.7 bits (104), Expect = 0.24, Method: Composition-based stats.
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 632 VEEYFTNYIVNDSLGIIANAHTVFADREPRKARS 665
+++Y T Y VND+LG IA AH VFAD+E KA S
Sbjct: 8 IKQYITKYSVNDTLGTIAKAHIVFADKEMLKAIS 41
>gi|224144332|ref|XP_002336131.1| hypothetical protein POPTRDRAFT_584507 [Populus trichocarpa]
gi|222873590|gb|EEF10721.1| hypothetical protein POPTRDRAFT_584507 [Populus trichocarpa]
Length = 211
Score = 44.3 bits (103), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 8/65 (12%)
Query: 678 AVDFPKTG-VPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVK-----DIAP-- 729
A+D PK G E+P L + +P FMEK +K TY S +++GK++ VK D++
Sbjct: 32 ALDAPKKGGRKIEVPEALKAELFPHFMEKHEKKTYRSTSILGKIYDKVKAYEDMDLSSNV 91
Query: 730 HTSCI 734
H SC+
Sbjct: 92 HESCL 96
>gi|392597508|gb|EIW86830.1| hypothetical protein CONPUDRAFT_115565 [Coniophora puteana
RWD-64-598 SS2]
Length = 1143
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%)
Query: 537 VQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIY 596
V G V++ ++PC P DV+ + AV L D +V +G R + +G D DGD
Sbjct: 743 VLGSVLLTRHPCKLPTDVQKVTAVQRGELAGYTDVIVCSIQGDRRFADLLAGGDYDGDKA 802
Query: 597 FVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGII 648
V W+ +I ++ + ++ A + H ++ E F G++
Sbjct: 803 IVIWEPTIINTFRNADLKFSKAPEDLMSHFLKENITVEQFLEGTDASGAGLV 854
>gi|328850109|gb|EGF99278.1| hypothetical protein MELLADRAFT_79506 [Melampsora larici-populina
98AG31]
Length = 1048
Score = 43.1 bits (100), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 74/349 (21%), Positives = 145/349 (41%), Gaps = 51/349 (14%)
Query: 277 RLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD 336
R+ + F +E++++ +++P ++GK + + +DG +S A ++S GL+
Sbjct: 323 RVDREFKLVEESMALCRQLCQVVPG---KVGKAE-IMTDGAAALSRVAALHISSVKGLRP 378
Query: 337 N-PPSAFQIRYGGYKGVVAADPTSSKKL-----------SLRDSMRKYESE--LTKLDVL 382
PS +Q R G K V +S+K+ +L+ + +E+ + + L
Sbjct: 379 TFLPSVYQGRIGFAKAAVN-QVLASRKIPNSVFEELVDEALKSCVHAFETSDPMKLVHAL 437
Query: 383 AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGE 442
+ + R++++ + GI + + L++ ++D + + L+ S +
Sbjct: 438 SNESSISAYRKRRVVTQDGSNGIDHDPTINRTFGKTLPLESRISD--QTSDKLQQFSL-Q 494
Query: 443 NTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL 502
T+IL E LIC + ++++ R K +L R+ IP + C
Sbjct: 495 PTDIL-EYLICLLEAGFSASNRLVVEKLRWVKTHKLLQMRRLSIPIS---LSC------- 543
Query: 503 NYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNV 562
Y G R HG I+ ++ ++PC P D++ ++ V
Sbjct: 544 -YVYAIPDPDSTGTR--HG--------------ILARHALIWRSPCAAPIDIQKVRLVAN 586
Query: 563 PALHHM-VDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD 610
L + D +V +G R + SG D DGD V WD L+ P Q+
Sbjct: 587 EQLQRLYFDVLVCSTRGGRAVLSLLSGGDYDGDQVAVTWDKRLVDPFQN 635
>gi|414588065|tpg|DAA38636.1| TPA: hypothetical protein ZEAMMB73_143695 [Zea mays]
Length = 214
Score = 43.1 bits (100), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 657 DREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNV 716
D++ +K+ E ++L + + A+D G ++ HL VK YP FMEK +Y S ++
Sbjct: 10 DQDEKKSIVENMIKLVDLYYAALD----GHKVDVDRHLRVKAYPHFMEKKGFESYHSSSI 65
Query: 717 IGKLFRAVKDI 727
+G+++ ++I
Sbjct: 66 LGRIYDETEEI 76
>gi|402576653|gb|EJW70611.1| hypothetical protein WUBG_18482, partial [Wuchereria bancrofti]
Length = 59
Score = 42.7 bits (99), Expect = 0.79, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 227 RKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSK 286
R F +L S+SQ+R++ + + G A +IRE +G F N+ K +R+GQ F+ +K
Sbjct: 1 RHFVYLGSSNSQMRDNGCYFYDDGKGGQAHKIREQLGKFDSC-NIPKMMSRMGQCFTQAK 59
>gi|125590670|gb|EAZ31020.1| hypothetical protein OsJ_15103 [Oryza sativa Japonica Group]
Length = 352
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 37 SLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH 96
S ++VP+V P ++PYE+LF++N L+ G + ++++ ++ + PV +S
Sbjct: 272 SSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAKHVNADLFKALQ--ELPVDVS--RR 327
Query: 97 ALDKLYHLKECCYEP 111
+K++ L+ CY P
Sbjct: 328 IFEKMHKLESTCYGP 342
>gi|390596234|gb|EIN05636.1| hypothetical protein PUNSTDRAFT_137130 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 281
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 662 KARSEPCLQLAEKFSIAVDFPKTG--VPAEIPPHLYVKEYPDFME----KPDKPT-YESQ 714
K + C QLA+ S AVDF K+G VP + P L + PD+ +PD+ Y S
Sbjct: 4 KGGHQQC-QLAQLHSDAVDFQKSGRPVPMSLVPRLLFRAKPDWNAPETIQPDRANFYTST 62
Query: 715 NVIGKLFRAVK 725
IGKLFR ++
Sbjct: 63 KAIGKLFREIQ 73
>gi|361129951|gb|EHL01827.1| putative Hybrid signal transduction histidine kinase K [Glarea
lozoyensis 74030]
Length = 474
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 20/118 (16%)
Query: 365 LRDSMRKYESELTKLDV--------------LAWSKYQPCFLNRQLISLLSTLGIWDEIF 410
+RD+++ +E EL K D+ + W K P +N+ I+L+S +
Sbjct: 74 VRDALKMFEGELHKADLTLRFIVEESYTRLSVDWVKLDPSRVNQVFINLISNAIKFTSTE 133
Query: 411 EKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQ 468
EK+Q V ++ A T+P K + LE + NT+ E+L CG PD +LS+ +Q
Sbjct: 134 EKRQ--IVVKVGA-STEPPKPKNDLEFLPKSHNTS--NEILSCGT-PDQTIYLSISVQ 185
>gi|242208926|ref|XP_002470312.1| predicted protein [Postia placenta Mad-698-R]
gi|220730619|gb|EED84473.1| predicted protein [Postia placenta Mad-698-R]
Length = 842
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 536 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCV-------VFPQKGMRPHPNECS- 587
IV G V+V ++PC P DV+ + AV L VD + VF +K + H C+
Sbjct: 542 IVLGEVLVTRHPCKVPTDVQKVTAVFNQKLSSYVDVIVVSIKDHVFNKKLLNRHLASCTG 601
Query: 588 GSDLDGDIYFVCWDDELI 605
G D DGD W+ L+
Sbjct: 602 GGDYDGDTMEAFWNPALV 619
>gi|224008402|ref|XP_002293160.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971286|gb|EED89621.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 869
Score = 41.6 bits (96), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 26/118 (22%)
Query: 491 SMMGCLDETRTLNYGQVFVQISGAGY-RQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 549
+++G D T + YG VF+ GY + G LFS S + V V+++PCL
Sbjct: 592 TLVGVADPTGKIPYGTVFI----PGYTKNAEGSRELFSRSLNE--------VFVSRSPCL 639
Query: 550 HPGDVRVLKAV-----NVPALHHMVDC------VVF--PQKGMRPHPNECSGSDLDGD 594
P D ++L V + H + C ++F P+ P PN + DLDGD
Sbjct: 640 TPDDAKLLSVVGSQPDGMRKDHWDMLCSYRFGTIIFGTPENNQTPMPNLIADGDLDGD 697
>gi|375291488|ref|YP_005126028.1| Phosphoserine phosphatase [Corynebacterium diphtheriae 241]
gi|376246325|ref|YP_005136564.1| phosphoserine phosphatase [Corynebacterium diphtheriae HC01]
gi|371581159|gb|AEX44826.1| Phosphoserine phosphatase [Corynebacterium diphtheriae 241]
gi|372108955|gb|AEX75016.1| Phosphoserine phosphatase [Corynebacterium diphtheriae HC01]
Length = 427
Score = 41.2 bits (95), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 102/264 (38%), Gaps = 63/264 (23%)
Query: 248 ASRYGLTAAEIREWMGN-----------FREIRNVAKYAARLGQSFSSS----KETLSVH 292
A R+G+TAA R N FR ++A YA S ++TLSVH
Sbjct: 34 ADRHGVTAATFRVLSANNVQILDVEQSKFRGFLSIAVYAGIKASMIDSVEQGLRDTLSVH 93
Query: 293 MDEIEIIPDVKIEIGK---TKYVFSDG----------IGKVSAEFARKVASKCGLKDNPP 339
+ + + + E+ + T V G IG+ A+F + G+ D P
Sbjct: 94 GQSVSLSVESRTEVSRPRSTHVVVILGNPVGAEDIWKIGQTMADFGANIDGIRGISDYPV 153
Query: 340 SAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLA-------WSKYQPCF- 391
+ ++R V ADP LR ++ +EL +D++ SK CF
Sbjct: 154 TGLELR------VTVADPAPGAAEPLRKALAALTTEL-GVDIVIERAGLQRRSKRLVCFD 206
Query: 392 -----LNRQLISLLST-LGIWDEI-------------FEKKQREAVRQLDAILTDPLKAQ 432
+ ++I +L+ G +E+ FE+ RE V+ L + +
Sbjct: 207 CDSTLITGEVIEMLAAHAGREEEVAAVTERAMRGELDFEESLRERVKALAGLDASVIDEV 266
Query: 433 EALELMSPGENTNILKELLICGYK 456
+++PG T I + L GYK
Sbjct: 267 ARDIVLTPGARTTI-RTLKRLGYK 289
>gi|376254929|ref|YP_005143388.1| phosphoserine phosphatase [Corynebacterium diphtheriae PW8]
gi|372118013|gb|AEX70483.1| Phosphoserine phosphatase [Corynebacterium diphtheriae PW8]
Length = 427
Score = 41.2 bits (95), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 102/264 (38%), Gaps = 63/264 (23%)
Query: 248 ASRYGLTAAEIREWMGN-----------FREIRNVAKYAARLGQSFSSS----KETLSVH 292
A R+G+TAA R N FR ++A YA S ++TLSVH
Sbjct: 34 ADRHGVTAATFRVLSANNVQILDVEQSKFRGFLSIAVYAGIKASMIDSVEQGLRDTLSVH 93
Query: 293 MDEIEIIPDVKIEIGK---TKYVFSDG----------IGKVSAEFARKVASKCGLKDNPP 339
+ + + + E+ + T V G IG+ A+F + G+ D P
Sbjct: 94 GQSVSLSVESRTEVSRPRSTHVVVILGNPVGAEDIWKIGQTMADFGANIDGIRGISDYPV 153
Query: 340 SAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLA-------WSKYQPCF- 391
+ ++R V ADP LR ++ +EL +D++ SK CF
Sbjct: 154 TGLELR------VTVADPAPGAAEPLRKALAALTTEL-GVDIVIERAGLQRRSKRLVCFD 206
Query: 392 -----LNRQLISLLST-LGIWDEI-------------FEKKQREAVRQLDAILTDPLKAQ 432
+ ++I +L+ G +E+ FE+ RE V+ L + +
Sbjct: 207 CDSTLITGEVIEMLAAHAGREEEVAAVTERAMRGELDFEESLRERVKALAGLDASVIDEV 266
Query: 433 EALELMSPGENTNILKELLICGYK 456
+++PG T I + L GYK
Sbjct: 267 ARDIVLTPGARTTI-RTLQRLGYK 289
>gi|376293874|ref|YP_005165548.1| phosphoserine phosphatase [Corynebacterium diphtheriae HC02]
gi|372111197|gb|AEX77257.1| Phosphoserine phosphatase [Corynebacterium diphtheriae HC02]
Length = 427
Score = 41.2 bits (95), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 102/264 (38%), Gaps = 63/264 (23%)
Query: 248 ASRYGLTAAEIREWMGN-----------FREIRNVAKYAARLGQSFSSS----KETLSVH 292
A R+G+TAA R N FR ++A YA S ++TLSVH
Sbjct: 34 ADRHGVTAATFRVLSANNVQILDVEQSKFRGFLSIAVYAGIKASMIDSVEQGLRDTLSVH 93
Query: 293 MDEIEIIPDVKIEIGK---TKYVFSDG----------IGKVSAEFARKVASKCGLKDNPP 339
+ + + + E+ + T V G IG+ A+F + G+ D P
Sbjct: 94 GQSVSLSVESRTEVSRPRSTHVVVILGNPVGAEDIWKIGQTMADFGANIDGIRGISDYPV 153
Query: 340 SAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLA-------WSKYQPCF- 391
+ ++R V ADP LR ++ +EL +D++ SK CF
Sbjct: 154 TGLELR------VTVADPAPGAAEPLRKALAALTTEL-GVDIVIERAGLQRRSKRLVCFD 206
Query: 392 -----LNRQLISLLST-LGIWDEI-------------FEKKQREAVRQLDAILTDPLKAQ 432
+ ++I +L+ G +E+ FE+ RE V+ L + +
Sbjct: 207 CDSTLITGEVIEMLAAHAGREEEVAAVTERAMRGELDFEESLRERVKALAGLDASVIDEV 266
Query: 433 EALELMSPGENTNILKELLICGYK 456
+++PG T I + L GYK
Sbjct: 267 ARDIVLTPGARTTI-RTLKRLGYK 289
>gi|38234433|ref|NP_940200.1| hydrolase [Corynebacterium diphtheriae NCTC 13129]
gi|419861411|ref|ZP_14384045.1| phosphoserine phosphatase [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|38200696|emb|CAE50392.1| Putative hydrolase [Corynebacterium diphtheriae]
gi|387982077|gb|EIK55593.1| phosphoserine phosphatase [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 410
Score = 41.2 bits (95), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 104/267 (38%), Gaps = 69/267 (25%)
Query: 248 ASRYGLTAAEIREWMGN-----------FREIRNVAKYAARLGQSFSSS----KETLSVH 292
A R+G+TAA R N FR ++A YA S ++TLSVH
Sbjct: 17 ADRHGVTAATFRVLSANNVQILDVEQSKFRGFLSIAVYAGIKASMIDSVEQGLRDTLSVH 76
Query: 293 MDEIEIIPDVKIEIGK---TKYVFSDG----------IGKVSAEFARKVASKCGLKDNPP 339
+ + + + E+ + T V G IG+ A+F + G+ D P
Sbjct: 77 GQSVSLSVESRTEVSRPRSTHVVVILGNPVGAEDIWKIGQTMADFGANIDGIRGISDYPV 136
Query: 340 SAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLA-------WSKYQPCF- 391
+ ++R V ADP LR ++ +EL +D++ SK CF
Sbjct: 137 TGLELR------VTVADPAPGAAEPLRKALAALTTEL-GVDIVIERAGLQRRSKRLVCFD 189
Query: 392 -----LNRQLISLLST-LGIWDEI-------------FEKKQREAVRQ---LDAILTDPL 429
+ ++I +L+ G +E+ FE+ RE V+ LDA + D +
Sbjct: 190 CDSTLITGEVIEMLAAHAGREEEVAAVTERAMRGELDFEESLRERVKALAGLDASVIDEV 249
Query: 430 KAQEALELMSPGENTNILKELLICGYK 456
L +PG T I + L GYK
Sbjct: 250 ARDIVL---TPGARTTI-RTLKRLGYK 272
>gi|376243417|ref|YP_005134269.1| phosphoserine phosphatase [Corynebacterium diphtheriae CDCE 8392]
gi|376251913|ref|YP_005138794.1| phosphoserine phosphatase [Corynebacterium diphtheriae HC03]
gi|376291021|ref|YP_005163268.1| phosphoserine phosphatase [Corynebacterium diphtheriae C7 (beta)]
gi|372104417|gb|AEX68014.1| Phosphoserine phosphatase [Corynebacterium diphtheriae C7 (beta)]
gi|372106659|gb|AEX72721.1| Phosphoserine phosphatase [Corynebacterium diphtheriae CDCE 8392]
gi|372113417|gb|AEX79476.1| Phosphoserine phosphatase [Corynebacterium diphtheriae HC03]
Length = 427
Score = 41.2 bits (95), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 104/267 (38%), Gaps = 69/267 (25%)
Query: 248 ASRYGLTAAEIREWMGN-----------FREIRNVAKYAARLGQSFSSS----KETLSVH 292
A R+G+TAA R N FR ++A YA S ++TLSVH
Sbjct: 34 ADRHGVTAATFRVLSANNVQILDVEQSKFRGFLSIAVYAGIKASMIDSVEQGLRDTLSVH 93
Query: 293 MDEIEIIPDVKIEIGK---TKYVFSDG----------IGKVSAEFARKVASKCGLKDNPP 339
+ + + + E+ + T V G IG+ A+F + G+ D P
Sbjct: 94 GQSVSLSVESRTEVSRPRSTHVVVILGNPVGAEDIWKIGQTMADFGANIDGIRGISDYPV 153
Query: 340 SAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLA-------WSKYQPCF- 391
+ ++R V ADP LR ++ +EL +D++ SK CF
Sbjct: 154 TGLELR------VTVADPAPGAAEPLRKALAALTTEL-GVDIVIERAGLQRRSKRLVCFD 206
Query: 392 -----LNRQLISLLST-LGIWDEI-------------FEKKQREAVRQ---LDAILTDPL 429
+ ++I +L+ G +E+ FE+ RE V+ LDA + D +
Sbjct: 207 CDSTLITGEVIEMLAAHAGREEEVAAVTERAMRGELDFEESLRERVKALAGLDASVIDEV 266
Query: 430 KAQEALELMSPGENTNILKELLICGYK 456
L +PG T I + L GYK
Sbjct: 267 ARDIVL---TPGARTTI-RTLKRLGYK 289
>gi|376288350|ref|YP_005160916.1| phosphoserine phosphatase [Corynebacterium diphtheriae BH8]
gi|371585684|gb|AEX49349.1| Phosphoserine phosphatase [Corynebacterium diphtheriae BH8]
Length = 427
Score = 41.2 bits (95), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 102/264 (38%), Gaps = 63/264 (23%)
Query: 248 ASRYGLTAAEIREWMGN-----------FREIRNVAKYAARLGQSFSSS----KETLSVH 292
A R+G+TAA R N FR ++A YA S ++TLSVH
Sbjct: 34 ADRHGVTAATFRVLSANNVQILDVEQSKFRGFLSIAVYAGIKASMIDSVEQGLRDTLSVH 93
Query: 293 MDEIEIIPDVKIEIGK---TKYVFSDG----------IGKVSAEFARKVASKCGLKDNPP 339
+ + + + E+ + T V G IG+ A+F + G+ D P
Sbjct: 94 GQSVSLSVESRTEVSRPRSTHVVVILGNPVGAEDIWKIGQTMADFGANIDGIRGISDYPV 153
Query: 340 SAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLA-------WSKYQPCF- 391
+ ++R V ADP LR ++ +EL +D++ SK CF
Sbjct: 154 TGLELR------VTVADPAPGAAEPLRKALAALTTEL-GVDIVIERAGLQRRSKRLVCFD 206
Query: 392 -----LNRQLISLLST-LGIWDEI-------------FEKKQREAVRQLDAILTDPLKAQ 432
+ ++I +L+ G +E+ FE+ RE V+ L + +
Sbjct: 207 CDSTLITGEVIEMLAAHAGREEEVAAVTERAMRGELDFEESLRERVKALAGLDASVIDEV 266
Query: 433 EALELMSPGENTNILKELLICGYK 456
+++PG T I + L GYK
Sbjct: 267 ARDIVLTPGARTTI-RTLKRLGYK 289
>gi|376249115|ref|YP_005141059.1| phosphoserine phosphatase [Corynebacterium diphtheriae HC04]
gi|376257726|ref|YP_005145617.1| phosphoserine phosphatase [Corynebacterium diphtheriae VA01]
gi|376285345|ref|YP_005158555.1| phosphoserine phosphatase [Corynebacterium diphtheriae 31A]
gi|371578860|gb|AEX42528.1| Phosphoserine phosphatase [Corynebacterium diphtheriae 31A]
gi|372115683|gb|AEX81741.1| Phosphoserine phosphatase [Corynebacterium diphtheriae HC04]
gi|372120243|gb|AEX83977.1| Phosphoserine phosphatase [Corynebacterium diphtheriae VA01]
Length = 427
Score = 41.2 bits (95), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 102/264 (38%), Gaps = 63/264 (23%)
Query: 248 ASRYGLTAAEIREWMGN-----------FREIRNVAKYAARLGQSFSSS----KETLSVH 292
A R+G+TAA R N FR ++A YA S ++TLSVH
Sbjct: 34 ADRHGVTAATFRVLSANNVQILDVEQSKFRGFLSIAVYAGIKASMIDSVEQGLRDTLSVH 93
Query: 293 MDEIEIIPDVKIEIGK---TKYVFSDG----------IGKVSAEFARKVASKCGLKDNPP 339
+ + + + E+ + T V G IG+ A+F + G+ D P
Sbjct: 94 GQSVSLSVESRTEVSRPRSTHVVVILGNPVGAEDIWKIGQTMADFGANIDGIRGISDYPV 153
Query: 340 SAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLA-------WSKYQPCF- 391
+ ++R V ADP LR ++ +EL +D++ SK CF
Sbjct: 154 TGLELR------VTVADPAPGAAEPLRKALAALTTEL-GVDIVIERAGLQRRSKRLVCFD 206
Query: 392 -----LNRQLISLLST-LGIWDEI-------------FEKKQREAVRQLDAILTDPLKAQ 432
+ ++I +L+ G +E+ FE+ RE V+ L + +
Sbjct: 207 CDSTLITGEVIEMLAAHAGREEEVAAVTERAMRGELDFEESLRERVKALAGLDASVIDEV 266
Query: 433 EALELMSPGENTNILKELLICGYK 456
+++PG T I + L GYK
Sbjct: 267 ARDIVLTPGARTTI-RTLKRLGYK 289
>gi|300709176|ref|XP_002996755.1| hypothetical protein NCER_100131 [Nosema ceranae BRL01]
gi|239606078|gb|EEQ83084.1| hypothetical protein NCER_100131 [Nosema ceranae BRL01]
Length = 849
Score = 41.2 bits (95), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 143 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 202
V VTP R+ + P + SNR+LR F D + FLRISF +E DL +
Sbjct: 769 VKHAVVTPLRIVYKLPVVFESNRILREF--DYEKFLRISFREE--------DLKTKIKDT 818
Query: 203 TDITRTRIYTRILSTLRNGILIGDR 227
+ + IY + L GI +G +
Sbjct: 819 VNKDQNFIYDYFRNILNEGIFVGKK 843
>gi|449541903|gb|EMD32884.1| hypothetical protein CERSUDRAFT_142953, partial [Ceriporiopsis
subvermispora B]
Length = 125
Score = 40.8 bits (94), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 214 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIRE---WMGNFREIRN 270
++ + G+++ ++ F S+SQLR ++ R T E+ E +G+F I
Sbjct: 1 MIRLFQAGLMLNGVQYRFYGHSNSQLRSRGCFL---REANTDDELDEKIYSLGDFHRIMT 57
Query: 271 VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVA 329
AK A R+G FS ++ + + I D+ + G+ FSDG G +S FA +V+
Sbjct: 58 AAKRAKRIGLLFSQAELDWVLDPRHTKDIDDIVVN-GEN---FSDGCGLMSKRFATQVS 112
>gi|336365378|gb|EGN93729.1| hypothetical protein SERLA73DRAFT_163465 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1089
Score = 40.8 bits (94), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 515 GYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVF 574
G SL + + Q V+G V+V +NP P D++ + AV+ P L + +VF
Sbjct: 739 GEIHFRSSESLTNPATGAQFDTVRGEVLVTRNPTRLPSDIQKVTAVSHPKLDNYYGVIVF 798
Query: 575 PQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPM 613
KG R + G GD + W L+ ++ P
Sbjct: 799 STKGDRSLASWLGG----GDTVTLIWSKPLVDSFKNSPF 833
>gi|409083947|gb|EKM84304.1| hypothetical protein AGABI1DRAFT_32196 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 999
Score = 40.4 bits (93), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 15/189 (7%)
Query: 449 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL--DETRTLNYGQ 506
ELL G+ P L L +F + +E K + IP S+ G + D L+ G+
Sbjct: 551 ELLQAGFHPRHSAVLKDKL-SFIIEQEIEHCVK-KYAIPLAESLSGFVAPDPLGILDEGE 608
Query: 507 VFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH 566
++ + S SL IV G V++ + P D++ +KAVN P L+
Sbjct: 609 IYFRSS----------ESLLDPRTQLTYDIVTGDVILGRYPVRLASDLQKVKAVNKPELY 658
Query: 567 HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHD 626
D ++ KG R + SG + + F+ + +++ P ++ P P +
Sbjct: 659 RWPDVIIVSTKGTRSLASLLSGGGMFYTL-FMLREPDIVEPFRNQPFVPPPDDLYDANFK 717
Query: 627 VQIEDVEEY 635
+E V ++
Sbjct: 718 KHVETVRQF 726
>gi|225382110|gb|ACN89267.1| putative RNA-dependent RNA polymerase 2 [Thalassiosira pseudonana]
Length = 1039
Score = 40.0 bits (92), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 30/123 (24%)
Query: 491 SMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLH 550
S++G +D T ++ G V+ I G G R + + + ++PC
Sbjct: 670 SVIGLIDPTGSIPNGMVY--IPGMGKR-------------------LPSKIFITRSPCTE 708
Query: 551 PGDVRVLK-AVNVPA-------LHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDD 602
RV++ A +P + VVF + P P + + DLDGD YF+CWDD
Sbjct: 709 VSHGRVVEVAKELPPDAFQFFNREYSFGSVVFALE-ENPLPMKLADGDLDGDWYFICWDD 767
Query: 603 ELI 605
+++
Sbjct: 768 KIL 770
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,491,619,392
Number of Sequences: 23463169
Number of extensions: 624929799
Number of successful extensions: 1428015
Number of sequences better than 100.0: 796
Number of HSP's better than 100.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 1422593
Number of HSP's gapped (non-prelim): 1263
length of query: 904
length of database: 8,064,228,071
effective HSP length: 152
effective length of query: 752
effective length of database: 8,792,793,679
effective search space: 6612180846608
effective search space used: 6612180846608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 82 (36.2 bits)