BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002586
(904 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LQV2|RDR1_ARATH RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2
SV=1
Length = 1107
Score = 1279 bits (3310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 624/889 (70%), Positives = 726/889 (81%), Gaps = 26/889 (2%)
Query: 1 MELPYRLELPDFKENFAYYKESE-DRFVLETGSAYSRSLD-LVPIVGPPDGIALPYEILF 58
+ELP L +PDF+ENFA Y E F++E+GS+YS + + LVP+V PP G +LP+EILF
Sbjct: 225 LELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILF 284
Query: 59 KINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQ 118
K+N LVQN C++GP LD +FYRL++ + ++ I+H L+KL+HL ECCYEP+ WL D+
Sbjct: 285 KLNTLVQNACLSGPALDLDFYRLLNQKKYDRAL--IDHCLEKLFHLGECCYEPAHWLRDE 342
Query: 119 YRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFL 178
Y+K+++ P SP ISLDDGLVY++RVQVTP+RVYF GPE+NVSNRVLRH+ + I+NFL
Sbjct: 343 YKKWISKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFL 402
Query: 179 RISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQ 238
R+SF+DEDL+K+ S DLSPR S+ RT++Y RI S LR+GI+IGD+KFEFLAFSSSQ
Sbjct: 403 RVSFVDEDLEKVRSMDLSPRSSTQR---RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQ 459
Query: 239 LRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI 298
LRE+SAWMFA +TAA IR WMG+F IRNVAKYAARLGQSFSSS+ETL+V DEIE+
Sbjct: 460 LRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEV 519
Query: 299 IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT 358
IPDV+I T+YVFSDGIGK+SAEFARKVA KCGL + PSAFQIRYGGYKGVVA DP
Sbjct: 520 IPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPN 579
Query: 359 SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAV 418
SSKKLSLR SM K+ESE TKLDVLAWSKYQPC++NRQLI+LLSTLG+ D +FEKKQRE V
Sbjct: 580 SSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVV 639
Query: 419 RQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLEL 478
+LDAILT PL+A EAL LM+PGENTNILK L++CGYKPDAEPFLSMMLQ FRASKLLEL
Sbjct: 640 DRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLEL 699
Query: 479 RTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ 538
RTKTRIFI GRSMMGCLDETRTL YGQV VQ S R +RFI+
Sbjct: 700 RTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYS--------------DPMRPGRRFIIT 745
Query: 539 GLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFV 598
G VVVAKNPCLHPGDVRVL+AVNVPAL+HMVDCVVFPQKG+RPHPNECSGSDLDGDIYFV
Sbjct: 746 GPVVVAKNPCLHPGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFV 805
Query: 599 CWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADR 658
CWD EL+PP+ PMDYTP + LDHDV IE+VEEYF NYIVNDSLGIIANAHT FAD+
Sbjct: 806 CWDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADK 865
Query: 659 EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIG 718
EP KA S+PC++LA+KFS AVDFPKTGV A IP HLYVKEYPDFMEKPDKPTYES+NVIG
Sbjct: 866 EPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIG 925
Query: 719 KLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMD 778
KLFR VK+ AP I+ FT +VA +SYD DMEVDGFE+++D+A Y K NYD+KLGNLMD
Sbjct: 926 KLFREVKERAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMD 985
Query: 779 YYGIKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYA 838
YYGIKTEAEIL+G IM+MSKSFTKRRDAE+IG AVRALRKE + F + A
Sbjct: 986 YYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEEN---ESA 1042
Query: 839 KASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTSIG 887
KASAWYHVTYH YWG YN+G+NRDHFLSF WCVYD+LV IK KT++G
Sbjct: 1043 KASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIK--KTNLG 1089
>sp|Q0DXS3|RDR1_ORYSJ Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp.
japonica GN=RDR1 PE=2 SV=2
Length = 740
Score = 1011 bits (2613), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/746 (65%), Positives = 589/746 (78%), Gaps = 23/746 (3%)
Query: 151 SRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRI 210
S VYF GPEINVSNRV+R+F DI+NFLRISF+DED +K+ +TDLSPR +S D RT +
Sbjct: 7 STVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTAL 66
Query: 211 YTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRN 270
Y R+LS L +GI IG + FEFLAFSSSQLR++SAWMFASR GL A++IR WMG+FR IRN
Sbjct: 67 YKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRN 126
Query: 271 VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS 330
VAKYAARLGQSFSSS ETL V E+E I D+K T++VFSDGIGK+S+ FA +VA
Sbjct: 127 VAKYAARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEVAM 183
Query: 331 KCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPC 390
KC LK PSAFQIRYGGYKGVVA DPTS KLSLR SM K++S+ +DVLA+SKYQP
Sbjct: 184 KCNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPG 243
Query: 391 FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKEL 450
FLNRQLI+LLSTLG+ D +FE+KQ EAV QL+ ++TDP A EA+ELM GE TN +KEL
Sbjct: 244 FLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKEL 303
Query: 451 LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQ 510
L+CGY+PD EP+LSM+LQTFRASKLLEL+TK+RI IP GR+MMGCLDETRTL YGQVF++
Sbjct: 304 LLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIR 363
Query: 511 ISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD 570
+ S RF V G VV+AKNPCLHPGD+R+L AV+VP LHHM +
Sbjct: 364 AT--------------SGVNDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFN 409
Query: 571 CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIE 630
CVVFPQ+G RPHPNECSGSDLDGDIYFV WD LIPP+ PMDYTPA + LDHDV IE
Sbjct: 410 CVVFPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIE 469
Query: 631 DVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEI 690
+VEEYFTNYIVN+SLG+IANAH VFAD+E KA S PC++LA+ FSIAVDFPKTGVPA I
Sbjct: 470 EVEEYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALI 529
Query: 691 PPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDM 750
PP L+VKEYPDFMEK DK TYES+ VIGKL+R +K PH I+ FT+EVARRSYD DM
Sbjct: 530 PPELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPH---IKHFTREVARRSYDTDM 586
Query: 751 EVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRDAEAIG 810
VDG+ED+I +A+ K YD+KLGNLMD+YGIK+EAEI++G I+KM+K+FTK+ DA+AI
Sbjct: 587 IVDGYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIR 646
Query: 811 MAVRALRKEARAWFKEKSGSDT---EDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLS 867
+AVR+LRKEAR+ F E S D D + AKASAWYHVTYHP++WGCYN+G R HF+S
Sbjct: 647 LAVRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFIS 706
Query: 868 FPWCVYDRLVEIKKDKTSIGNAFPAL 893
FPWC+Y++L+ IK+ + + P L
Sbjct: 707 FPWCIYEKLLRIKQRRKFVRKMQPEL 732
>sp|Q7XM31|RDR2_ORYSJ Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp.
japonica GN=RDR2 PE=2 SV=1
Length = 1136
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/863 (44%), Positives = 544/863 (63%), Gaps = 42/863 (4%)
Query: 37 SLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH 96
S ++VP+V P ++PYE+LF++N L+ G + ++++ ++ + PV +S
Sbjct: 272 SSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAKHVNADLFKALQ--ELPVDVS--RR 327
Query: 97 ALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDG-------LVYVHRVQVT 149
+K++ L+ CY P +++ Q Y RS + ++G L+ +RV +T
Sbjct: 328 IFEKMHKLESTCYGPLQFI--QQEAYSMKRSHN---VLLSNEGEGEGERKLMKCYRVNIT 382
Query: 150 PSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA--TDITR 207
PS+++ GPE V+N V++H +F+R++F+DED K+ S +S R + +
Sbjct: 383 PSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSNAISARIEQGFFSKPFK 442
Query: 208 TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFRE 267
T +Y RILS L+ G IG + FEFLAFS+SQLR +S WMFAS L A IR WMG+F
Sbjct: 443 TGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNASLNAGGIRRWMGHFEN 502
Query: 268 IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARK 327
IR+V+K AAR+GQ FSSS++T V ++E+IPD++I +KY+FSDGIGK+S FA++
Sbjct: 503 IRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTDGSKYIFSDGIGKISLRFAKR 562
Query: 328 VASKCGLK-DNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSK 386
VA GL N PSAFQIRYGGYKGV+A DP SS LSLR SM+K+ESE L++ +WSK
Sbjct: 563 VAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPSMKKFESESRMLNITSWSK 622
Query: 387 YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI 446
QPC++NR++ISLLSTLGI DEIF Q++ +R+ + +LT+ A L + G T
Sbjct: 623 SQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVALSVLGKLG-GSETKT 681
Query: 447 LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQ 506
++L+ GY+P +EP+LSM+L+ + ++L ++RT+ +I +P GR ++GCLDET L YGQ
Sbjct: 682 AVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRVLIGCLDETGVLEYGQ 741
Query: 507 VFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH 566
V+++I+ Q S F + + +V G V + KNPCLHPGD+RVL+A+ P L
Sbjct: 742 VYIRITKNSKEQKDSNQSYFYNDDGKTATVV-GKVAITKNPCLHPGDIRVLEAIYDPDLV 800
Query: 567 HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHD 626
MVDC+VFPQ+G RPHPNECSG DLDGD+YF+ WDD+LIP + D PMDYT + +DH
Sbjct: 801 GMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTPMDYTATRPRIMDHV 860
Query: 627 VQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGV 686
V +E+++++F +Y++NDSLG I+ AH + ADR P KARS CLQLA S+AVDF KTG
Sbjct: 861 VTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGA 920
Query: 687 PAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRS- 745
PAE+P L +EYPDFME+ +KP Y S V+GKL+R+ + + A+ S
Sbjct: 921 PAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPSP 980
Query: 746 -YDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRR 804
YDPD+EV G ++ + A + Y+ KL LM+YY + E EILTG+I +K +R
Sbjct: 981 TYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDEILTGNI--RNKMLYLKR 1038
Query: 805 D-------AEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYN 857
D + I AV AL +EAR W S E+DA ASAWY VTYHPD
Sbjct: 1039 DNKRYFEMKDRIVAAVDALHREARGWLLS---SRKEEDASRMASAWYRVTYHPD----RR 1091
Query: 858 QGMNRDHFLSFPWCVYDRLVEIK 880
+G F SFPW D L+ IK
Sbjct: 1092 RG---KRFWSFPWIACDNLLAIK 1111
>sp|O82504|RDR2_ARATH RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=3
SV=1
Length = 1133
Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/885 (43%), Positives = 545/885 (61%), Gaps = 30/885 (3%)
Query: 11 DFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPD-GIALPYEILFKINLLVQNGCV 69
D YY+E G ++ + +VP++ G+ PYEILF++N LV +
Sbjct: 249 DIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQKI 308
Query: 70 AGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTS-RSK 128
+ L ++ L+ R +S+ L KL+ CY+P ++ Q + + +
Sbjct: 309 S--LFAASDMELIKILRG-MSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHS 365
Query: 129 PSSPAISL-DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDL 187
P+S L + ++ R VTPS++Y GPE+ +N V+++F + +F+R++F++ED
Sbjct: 366 PASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDW 425
Query: 188 DKIHSTDLSPRGSSATDI--TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAW 245
K+ + LS + +RT IY R+LS L GI +G ++FEFLAFS+SQLR +S W
Sbjct: 426 SKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVW 485
Query: 246 MFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE 305
MFAS + A +IREWMG FR+IR+++K AAR+GQ FS+S++TL V ++E IPD+++
Sbjct: 486 MFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVT 545
Query: 306 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL 365
Y FSDGIGK+S FA++VA KCGL + PSAFQIRYGGYKGV+A D +S +KLSL
Sbjct: 546 TDGADYCFSDGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVIAVDRSSFRKLSL 604
Query: 366 RDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL 425
RDSM K++S L+V W++ PCFLNR++I LLSTLGI D +FE Q + L +L
Sbjct: 605 RDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNML 664
Query: 426 TDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 485
D A L+ +S + N+L ++L+ GY P +EP+LSMML+ S+L EL+++ RI
Sbjct: 665 EDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRIL 724
Query: 486 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 545
+P GR ++GC+DE L YGQV+V+++ + S F + +V G VVV K
Sbjct: 725 VPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKI-DEETSVVIGKVVVTK 783
Query: 546 NPCLHPGDVRVLKAVNVPALHH--MVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDE 603
NPCLHPGD+RVL A+ +DC++FPQKG RPHPNECSG DLDGD +FV WD++
Sbjct: 784 NPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEK 843
Query: 604 LIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPRKA 663
+IP + DPPMDY ++ +DHDV +E++ ++F +Y+++D+LG+I+ AH V ADR+P KA
Sbjct: 844 IIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKA 903
Query: 664 RSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRA 723
RS+ CL+LA S AVDF KTG PAE+P L +E+PDF+E+ +KPTY S++V GKL+RA
Sbjct: 904 RSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRA 963
Query: 724 VKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIK 783
VK VA YD +E GFE I+ A H+ Y KL +LM YYG
Sbjct: 964 VKSSLAQRKPEAESEDTVA---YDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGAA 1020
Query: 784 TEAEILTGSIMKMSKSFTKRRD------AEAIGMAVRALRKEARAWFKEKSGSDTEDDAY 837
E EILTG I+K + + R + + I ++V+ L KEA WF EKS D E
Sbjct: 1021 NEEEILTG-ILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWF-EKSCED-EQQKK 1077
Query: 838 AKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKD 882
ASAWY+VTY+P N + FLSFPW V D L++IK +
Sbjct: 1078 KLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIKAE 1116
>sp|Q8LHH9|SHL2_ORYSJ Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp.
japonica GN=SHL2 PE=2 SV=1
Length = 1218
Score = 584 bits (1506), Expect = e-166, Method: Compositional matrix adjust.
Identities = 348/862 (40%), Positives = 499/862 (57%), Gaps = 52/862 (6%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 110
L + +LF +N LV G + L F+ L+ V+++ + + + + C
Sbjct: 351 GLKFPLLFMVNALVHKGIINQHQLTPEFFSLLGRSEENVNVAALRDFWGDKFPVFDACGR 410
Query: 111 PSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF 170
+ L R P + D V R+ +TP+R Y PE+ SNRVLRH+
Sbjct: 411 LKKALNRVARN-------PKLLCSKVGDDHAEVRRLVITPTRAYCLPPEVERSNRVLRHY 463
Query: 171 RRDIDNFLRISFIDEDLDKIHSTDL-SPRGSSATDIT------RTRIYTRILSTLRNGIL 223
D FLR++F+DE + +++ L S D+ +T +Y R+ L G
Sbjct: 464 HEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFH 523
Query: 224 IGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFS 283
+ RK+ FLAFSS+QLR+ SAW FA T IR+WMG F +NVAK+AAR+GQ FS
Sbjct: 524 MCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKWMGRFTS-KNVAKHAARMGQCFS 582
Query: 284 SSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQ 343
S+ T+++ DE++ D ++ +Y+FSDGIGK++ + A +VA + L DNPPSA+Q
Sbjct: 583 STYATVTMRPDEVDESFD---DVVHNEYIFSDGIGKITPDLALEVAERLQLTDNPPSAYQ 639
Query: 344 IRYGGYKGVVAA--DPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLS 401
IR+ G+KGV+A +L LR SMRK+ES L+V++W+K+QP FLNRQ+I LLS
Sbjct: 640 IRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLVLEVVSWTKFQPGFLNRQIIILLS 699
Query: 402 TLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEP 461
+L + D IF + Q + L+ IL+D A E L S ++ N +L G++P EP
Sbjct: 700 SLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVLT-TSCADDGNTAALMLSAGFEPRTEP 758
Query: 462 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI---SGAGYRQ 518
L ML R+++L +L K RIF+P GR +MGCLDE L GQ F++ S Y
Sbjct: 759 HLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGVLEQGQCFIRATVPSLNSYFV 818
Query: 519 LHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 578
HG S FSS+ I+ G VV+AKNPCLHPGDVR+L+AV+VP LHH+VDC+VFPQKG
Sbjct: 819 KHG--SRFSSTDKNTEVIL-GTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKG 875
Query: 579 MRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP--PMDYTPAQSMQLDHDVQIEDVEEYF 636
RPH NE SGSDLDGD+YFV WD++LIPP + PMDY+P ++ QL V D+ ++F
Sbjct: 876 ERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFF 935
Query: 637 TNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYV 696
+++++LG I NAH V AD A E C+ LAE + AVDFPKTG A +PPHL
Sbjct: 936 LKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKP 995
Query: 697 KEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRS---YDPDMEVD 753
K YPDFM K D +Y+S+ ++G+L+R++++ S + ++EV + YD D+EV
Sbjct: 996 KVYPDFMGKEDGQSYKSEKILGRLYRSIQE----ASNGDVVSQEVCTPNDLPYDIDLEVP 1051
Query: 754 GFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD--AEAIGM 811
G D + A K +YD +L L+ Y ++TEAE++TG I + K+ +K++ + +
Sbjct: 1052 GASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHITFLVKNSSKKQGDIKDRLKT 1111
Query: 812 AVRALRKEARAWFKEKS------GSDTEDDAY-AKASAWYHVTYHPDYWGCYNQGM---- 860
A ALRKE ++ F+ + G D ++ Y KASAWY VTYHP W ++G+
Sbjct: 1112 AYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPK-WVEKSRGILGPD 1170
Query: 861 --NRDHFLSFPWCVYDRLVEIK 880
LSF W D L IK
Sbjct: 1171 GEEIPASLSFAWIPVDYLARIK 1192
>sp|Q9SG02|RDR6_ARATH RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1
SV=1
Length = 1196
Score = 559 bits (1440), Expect = e-158, Method: Compositional matrix adjust.
Identities = 349/883 (39%), Positives = 509/883 (57%), Gaps = 63/883 (7%)
Query: 51 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 110
+ +EI+F +N ++ G L F+ L+ V+I+ ++H C Y+
Sbjct: 325 GISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQPKDVNIASLKHL---------CTYK 375
Query: 111 PSRWLTDQYRKY-MTSRSKPSSPAI----SLDDGLVYVHRVQVTPSRVYFCGPEINVSNR 165
R + D Y++ + +P + + + + R+ +TP+R Y PE+ +SNR
Sbjct: 376 --RPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDISEIRRLVITPTRAYCLPPEVELSNR 433
Query: 166 VLRHFRRDIDNFLRISFIDEDLDKIHSTDLS-------PRGSSATDITRTRIYTRILSTL 218
VLR ++ + FLR++F+DE + I+S LS +S++ +T ++ R+ S L
Sbjct: 434 VLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQKTYVFKRVKSIL 493
Query: 219 RNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARL 278
+G + RK+ FLAFS++QLR+ SAW FA ++I+ WMG F++ +NVAK AAR+
Sbjct: 494 TDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKFKD-KNVAKCAARM 552
Query: 279 GQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 337
G FSS+ T+ V E++ +PD++ + YVFSDGIG ++ + A +V K L +
Sbjct: 553 GLCFSSTYATVDVMPHEVDTEVPDIE----RNGYVFSDGIGTITPDLADEVMEKLKLDVH 608
Query: 338 -PPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNR 394
P A+QIRY G+KGVVA P+ S +L+LRDSM+K+ S+ T L++ +W+++QP FLNR
Sbjct: 609 YSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEICSWTRFQPGFLNR 668
Query: 395 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICG 454
Q+I+LLS LG+ DEIF Q + +L+ IL D A E L S E N +L G
Sbjct: 669 QIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLT-ASCAEQGNTAAIMLSAG 727
Query: 455 YKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGA 514
+KP EP L ML + R ++L LR K+RIF+ +GR +MGCLDE L +GQ F+Q+S
Sbjct: 728 FKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHGQCFIQVSKP 787
Query: 515 GYRQL---HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDC 571
HG S F +++ +V+G V +AKNPCLHPGDVR+L+AV+VP LHHM DC
Sbjct: 788 SIENCFSKHG--SRFKETKTDLE-VVKGYVAIAKNPCLHPGDVRILEAVDVPQLHHMYDC 844
Query: 572 VVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQD--PPMDYTPAQSMQLDHDVQI 629
++FPQKG RPH NE SGSDLDGD+YFV WD +LIPP + P M Y A+ L V
Sbjct: 845 LIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSLGRAVNH 904
Query: 630 EDVEEYFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPKTGVPAE 689
+D+ ++F + N+ LG I NAH V ADR A E CL LAE + AVDFPKTG
Sbjct: 905 QDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPKTGKIVS 964
Query: 690 IPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRS---Y 746
+P HL K YPDFM K D TY+S ++G+L+R VK++ + ++E S Y
Sbjct: 965 MPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDA--EASSEESTDPSAIPY 1022
Query: 747 DPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD- 805
D +E+ GFED I +A HK YD +L L+ Y ++ E EI+TG I M K +K++
Sbjct: 1023 DAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQGE 1082
Query: 806 -AEAIGMAVRALRKEARAWFKE-----KSGSDTEDDAY--AKASAWYHVTYHPDYWGCYN 857
E + + +L+KE R F+E ++ S+ E + KASAWYHVTYHP++
Sbjct: 1083 LKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWVKKSL 1142
Query: 858 QGMNRDH-----FLSFPWCVYDRLVEIK---KDKTSIGNAFPA 892
+ + D LSF W D L IK ++ SI +A P
Sbjct: 1143 ELQDPDESSHAAMLSFAWIAADYLARIKIRSREMGSIDSAKPV 1185
>sp|O14227|RDR1_SCHPO RNA-dependent RNA polymerase 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rdr1 PE=1 SV=1
Length = 1215
Score = 364 bits (935), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 245/785 (31%), Positives = 401/785 (51%), Gaps = 56/785 (7%)
Query: 141 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 200
+++ ++ VTP+ + + NRV+R+F+ + F+R+ DE + RG
Sbjct: 452 IHIKKLYVTPTTLRIVEDSLEAGNRVIRNFKDFANRFMRVQITDEYYKQ------KIRGG 505
Query: 201 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIRE 260
S ++Y+RI L GI +G++ +EFLAF +SQLRE A+ FAS L A +IRE
Sbjct: 506 S-DGFRNEKLYSRIQQLLTYGIKVGNQIYEFLAFGNSQLREHGAYFFASGSDLNAKQIRE 564
Query: 261 WMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKV 320
WMG+F EI +V+KYAAR+GQ FS++KE ++ + ++ +I + + F+DG+G
Sbjct: 565 WMGDFSEINSVSKYAARMGQCFSTTKE-----INRFCVDISLQDDIVRNNHCFTDGVGMA 619
Query: 321 SAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL------RDSMRKYES 374
S R+++ + D PSAFQ R GGYKGV++ P + + R S K++S
Sbjct: 620 SLSVIRRLSLEVKNHDMFPSAFQFRMGGYKGVLSLAPPTKLEYHQGNLVFPRRSQDKFKS 679
Query: 375 ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEA 434
+ L+V+ S++ LN QLI+LL LG+ +F + R + +++ + K+
Sbjct: 680 FHSTLEVIKISRFSNAHLNMQLITLLEGLGVEKTVFLELTRSQLSKMNESINSKQKSILM 739
Query: 435 L-ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 493
L + + +T I+ + + G+ + F +L + L ++ K ++ +P G ++
Sbjct: 740 LRDNVDEYHSTLIIADFIQAGFLERDDAFTENLLNLYYEWVLRLIKEKQKVSVPKGAYLL 799
Query: 494 GCLDETRT---------LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 544
G DET T L+ ++F+QI+ +S+ + + R IV GL +VA
Sbjct: 800 GVADETGTLKGHYDDAVLSVPEIFIQITDTS-----TSFGSYSTGKLKTRVIV-GLCIVA 853
Query: 545 KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDEL 604
+NP LHPGDVRV KAV L H+ + +VFP G R P CSG DLDGD Y V WD L
Sbjct: 854 RNPSLHPGDVRVCKAVRCDELMHLKNVIVFPTTGDRSIPAMCSGGDLDGDEYTVIWDQRL 913
Query: 605 IPPQQD--PPMDYTPAQSMQ-LDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFA---DR 658
+P + P ++ +P +S+ L+ I+ V+E+F NYI DSLG+I+NA +A D
Sbjct: 914 LPKIVNYPPLLESSPKKSIDFLEGKPLIDSVKEFFVNYIKYDSLGLISNAWKAWAHDHDN 973
Query: 659 EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIG 718
P CL+LAE S AVDF K+GV ++ + K YPDFM+K ++ S+ +G
Sbjct: 974 NPEGIFGNVCLELAEMHSKAVDFAKSGVACKMQAKYHPKRYPDFMQKTKTRSFRSETAVG 1033
Query: 719 KLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFE-DHIDDAIYHKGNYDYKLGNLM 777
K+FR + + + YDP M++ F+ ++++ A K +YD L ++M
Sbjct: 1034 KIFRYAARFQRESGRPATYN-PIMNTVYDPCMKLPRFKTEYLNVAEEVKKHYDNDLRSIM 1092
Query: 778 DYYGIKTEAEILTGSIM---KMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSG----- 829
+ I TE E+ T I+ ++K+ + E + L+K+ + EK
Sbjct: 1093 ARFDISTEYEVYTAFILFKDDLAKTVNEYGLREEVSFQFDLLKKKYTQEYLEKCALSNQS 1152
Query: 830 ----SDTEDDAYAKASAWYHVTYHPDYWGCYNQGMNRDHFLSFPWCVYDRLVEIKKDKTS 885
S+ E+ + +A Y VTY N + +SFP+ RL ++ +
Sbjct: 1153 AFDSSEYEERINSAVAATYDVTYDQRVKSVGNG--TTEVLISFPYLFSSRLCQLSRKAML 1210
Query: 886 IGNAF 890
N F
Sbjct: 1211 TANNF 1215
>sp|O82188|RDR5_ARATH Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana
GN=RDR5 PE=2 SV=2
Length = 977
Score = 110 bits (275), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 165/680 (24%), Positives = 267/680 (39%), Gaps = 133/680 (19%)
Query: 137 DDGLVYVHRVQVTPSRVY-------FCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDK 189
D G + ++ V P+ Y GP + + L D DN L + F D
Sbjct: 198 DSGKTHYYQCNVAPNGSYTFKVLSALQGPLLEHTGTHLHKVLGD-DNVLTVKFADVQ--- 253
Query: 190 IHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAF------------SSS 237
+ SS I Y I +NGI+IG R+++F F S+
Sbjct: 254 --------KSSSTYSIDHYFTYKGIA---KNGIMIGLRRYQFFVFKDGGKEEKKKDLSTK 302
Query: 238 QLR------ESSAWM-FASRYGLTAAEIREWMGNFREIR---NVAKYAARLGQSFSSSKE 287
+++ +S+A+ + Y LT I E +F + +A Y AR S +K
Sbjct: 303 KVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLILSKTK- 361
Query: 288 TLSVHMDEIEI--IPDVK---------IEIGKTKYVFSDGIGKVSAEFARKV-----ASK 331
TL V M I I D+ ++ K + SDG G +S + AR K
Sbjct: 362 TLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGK 421
Query: 332 C--------GLKDNPPSAFQIR--YGGY--KGVVAADPT-SSKKLSLRDSMRKYE----- 373
C +PP Q R Y GY KG + + + +R SM K
Sbjct: 422 CLRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSL 481
Query: 374 ---SELTKLDVLAWSKY-QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 429
S L+V+ S + L++ L++LLS GI +E F + + +I +
Sbjct: 482 SNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKR 541
Query: 430 KAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 489
A A ++ N + +L+ P EP L L ++ +L+ ++ +
Sbjct: 542 AALNAALNYGEMDDQNAAQMILVG--IPLDEPHLKNYLSILLKTEKNDLKA-GKLPVTES 598
Query: 490 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 549
+MG +D T L +V V + Q+ GE V+V +NP L
Sbjct: 599 YYLMGTVDPTGALKEDEVCVILESG---QISGE------------------VLVYRNPGL 637
Query: 550 HPGDVRVLKAVNVPALHHMVD----CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI 605
H GD+ +LKA V AL V V FPQKG R +E +G D DGD+YF+ + EL+
Sbjct: 638 HFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELL 697
Query: 606 P--PQQDPPMDYTP---------AQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTV 654
+P + TP + + + + ++ +GI A++
Sbjct: 698 ENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLT 757
Query: 655 FADR---------EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEK 705
DR E + + L+L + + A+D PK G +P L +P +ME+
Sbjct: 758 IMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMER 817
Query: 706 PDKPTYESQNVIGKLFRAVK 725
K ++S +++G +F VK
Sbjct: 818 DKK--FQSTSILGLIFDFVK 835
>sp|O82190|RDR3_ARATH Probable RNA-dependent RNA polymerase 3 OS=Arabidopsis thaliana
GN=RDR3 PE=3 SV=2
Length = 992
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 150/615 (24%), Positives = 245/615 (39%), Gaps = 134/615 (21%)
Query: 210 IYTRILSTLRNGILIGDRKFEFLAF-------------------------SSSQLRESSA 244
+Y+ +NGI++G R++ F F S++ + +
Sbjct: 267 LYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVKCYFIRTDSTASIDMQNP 326
Query: 245 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEI--EIIPDV 302
++FA G + E R + + ++ Y +R S +K TL V M I E I D+
Sbjct: 327 YIFA---GKSMHEARMHFMHVNTLSSLPNYMSRFSLILSKTK-TLEVDMTGITFEQIDDI 382
Query: 303 KIEIGKTKYVF---------SDGIGKVSAEFAR---------------KVASK------- 331
K V SDG G +S + AR + SK
Sbjct: 383 HCHDQDDKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMRSNNIQSKNLNFEGQ 442
Query: 332 --CGLKDNPPSAFQIR--YGGYKGVVAADPTSSKKL-----SLRDSMRK-YE-------S 374
CG PP Q R Y GY V ++KKL +R SM K YE S
Sbjct: 443 GPCG--QEPPLLIQFRIFYNGY--AVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLS 498
Query: 375 ELTKLDVLAWSKY-QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 433
L+V+ S + L+R L++LLS G+ ++ F R + + I A +
Sbjct: 499 TFNSLEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFK 558
Query: 434 ALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 493
A ++ G++ ++++ G P EP+L L ++ L+ R I +M
Sbjct: 559 AA--INYGDD-QYTADMILVGI-PLDEPYLKDRLSYLLKTERNALKA-GRFPIDESYYIM 613
Query: 494 GCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGD 553
G +D T L ++ V + + G V+V +NP LH GD
Sbjct: 614 GTVDPTGELKENEICVILHSGQ---------------------ISGDVLVYRNPGLHFGD 652
Query: 554 VRVLKAVNVPALHHMVD----CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIP--- 606
+ VLKA V AL V V FPQKG R +E +G D DGD+YF+ + +L+
Sbjct: 653 IHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFK 712
Query: 607 ------PQQDPPMDYTPAQSMQLDHDVQIEDVEEYF--TNYIVNDSLGIIANAHTVFAD- 657
P Y + +L + E++ + F + D +G+ A+ D
Sbjct: 713 PSEPWVSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDP 772
Query: 658 --------REPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKP 709
+ + R + L+L + + A+D PK G ++PP L +K +P +ME+ K
Sbjct: 773 FLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKR 832
Query: 710 TYESQNVIGKLFRAV 724
+ S +++G +F V
Sbjct: 833 DFRSTSILGLIFDTV 847
>sp|O82189|RDR4_ARATH Probable RNA-dependent RNA polymerase 4 OS=Arabidopsis thaliana
GN=RDR4 PE=3 SV=2
Length = 927
Score = 103 bits (257), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 161/677 (23%), Positives = 276/677 (40%), Gaps = 140/677 (20%)
Query: 137 DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS 196
D G + ++ V P Y R+ +F + L D+++ + L
Sbjct: 209 DSGKTHYYQCHVAPDGSY----------RLKGYFLENTGTHLHKVLGDDNVLTVRFDQL- 257
Query: 197 PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAF------------SSSQLR---- 240
P+ S+ D Y++ +NGI++G R+++F F S+ Q++
Sbjct: 258 PKESTYCD----NPYSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFI 313
Query: 241 ---ESSAWMFASRYGLTAAEIREWMGNFREIRNV---AKYAARLGQSFSSSKETLSVHMD 294
+++ + Y L+ I E +F + + A Y AR S +K+ L V M
Sbjct: 314 RTGSTASSDMENPYILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKK-LEVDMT 372
Query: 295 EIEIIP------------DVKIEIGKTKYVFSDGIGKVSAEFAR----KVASKCGLKDN- 337
EI ++ DV + GK + + SDG G +S + AR + ++ N
Sbjct: 373 EITVMQIDDIHCHDQSNNDVLDKNGKPR-IHSDGTGYISEDLARMCPLNIFKGKSMRSNN 431
Query: 338 --------PPSAFQIRY----GGYKGVVAADPT-SSKKLSLRDSMRK-YE-------SEL 376
PP QIR KG+ + + + +R SM K Y+ S
Sbjct: 432 IQGTCVQEPPLLIQIRMFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTF 491
Query: 377 TKLDVLAWSKY-QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL 435
L+V+ S + L++ L++LLS G+ ++ F + + I A +A
Sbjct: 492 NSLEVVTTSNPPKRAKLSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAA 551
Query: 436 ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRT----KTRIFIPNGRS 491
++ N L ++++ G P EP+L L SKLL+L ++ I
Sbjct: 552 LHYGNMDDKNAL-QMIMAGI-PLDEPYLKHYL-----SKLLKLEKDDLKAGKLPIDESYY 604
Query: 492 MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 551
+MG +D T L +V SG Q V+V +NP LH
Sbjct: 605 LMGTVDPTGELKEDEV----SGLAKSQD---------------------VLVYRNPGLHF 639
Query: 552 GDVRVLKAVNVPALHHMVD----CVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELI-- 605
GD+ +LKA V +L V V FPQKG R +E +G D DGD+YF+ + +L+
Sbjct: 640 GDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEH 699
Query: 606 -----PPQQDPPMD--YTPAQSMQLDHDVQIEDVEEYF--TNYIVNDSLGIIANAHTVFA 656
P P YT Q +L + E++ + F T + + +G A++
Sbjct: 700 YKPSEPWVSSSPRSKIYTGRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIM 759
Query: 657 DR---------EPRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPD 707
DR + + + L+L + + A+D PKTG +P + V +P +ME+
Sbjct: 760 DRFLTLGDENVKEKAEMKKKMLKLTDIYYDAIDAPKTGTEVNLPLDVKVDLFPHYMER-- 817
Query: 708 KPTYESQNVIGKLFRAV 724
T++S +++G +F V
Sbjct: 818 NKTFKSTSILGLIFDTV 834
>sp|Q5QMN4|RDR4_ORYSJ Probable RNA-dependent RNA polymerase 4 OS=Oryza sativa subsp.
japonica GN=RDR4 PE=2 SV=2
Length = 1183
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 143/586 (24%), Positives = 226/586 (38%), Gaps = 125/586 (21%)
Query: 239 LRESSAWMFASRY---GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDE 295
+R S W Y G T + R+ + R + +AKY R S + TL V + E
Sbjct: 477 VRTESGWNMDEPYILSGRTIGQARDLFMHIRTVLTLAKYMLRFALIVSKTI-TLDVDLSE 535
Query: 296 I--EIIPDVKI--EIGKT------KYVFSDGIGKVSAEFARK------------------ 327
+ ++I D E GK + + +DG G +S + A+K
Sbjct: 536 VLVKLIDDEPCLDEHGKEVFRDGERLIHTDGTGLISEDLAQKCTYSNSKGKLLEPQDIVD 595
Query: 328 -VASKCGLKDNP---PSAFQIR--YGG--YKGVVAADP-TSSKKLSLRDSMRKYES---- 374
ASK +N P Q+R Y G KG V D + + +R SM K ++
Sbjct: 596 CAASKLMGSNNTTEYPLLIQLRLFYNGSAVKGTVLVDKRLPPRTIHIRPSMLKIKTYPEL 655
Query: 375 ----ELTKLDVLAWSKYQP----------------------CFLNRQLISLLSTLGIWDE 408
+ LD+++ + F + LI+LL G+ +E
Sbjct: 656 SGVQSVNSLDIVSARNAKKSLSGVQSVNSFEIVSTSNRSGRTFTSNNLIALLHYGGVPEE 715
Query: 409 IFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQ 468
F + + A+ + D D A + E++ + +I P E +L L
Sbjct: 716 FFMELLQTAIEEADNARFDYAGALNIAFNYADMEDS--MPARMILSGIPLEESYLQSRLD 773
Query: 469 TFRASKLLELR--TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLF 526
LLE + +I I + +MG D T L +V V + Y Q+ G+
Sbjct: 774 FL---SLLERKGIKNGKIPIDDCYYLMGTADPTGKLGPNEVCVILD---YGQVSGD---- 823
Query: 527 SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD----CVVFPQKGMRPH 582
V+V K P LHPGD+ VLKA + +V ++FP G R
Sbjct: 824 --------------VLVYKYPGLHPGDIHVLKATYSSDIEKVVGNSKHAILFPTTGQRSL 869
Query: 583 PNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEE-------- 634
+E + SD DGDIY+V + +L+ P + PA + ED E
Sbjct: 870 ADEMANSDFDGDIYWVSLNPKLLE-HFKPSKPWVPAITPNGTKQKGPEDFNESELERVLF 928
Query: 635 -----------YFTNYIVNDSLGIIANAHTVFADREPRKARSEPCLQLAEKFSIAVDFPK 683
Y + L + TV D +K + L+L + + +A+D PK
Sbjct: 929 HEFLKTRFAPSYARATAATNWLVYMDRLLTVSLDESEKKLIEKKMLKLVDLYYLALDAPK 988
Query: 684 TGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAP 729
G IP L VK+YP FM++ P+Y S +++GK++ D P
Sbjct: 989 MGNKVNIPRDLMVKQYPHFMDR--SPSYHSSSILGKIYDKAGDPKP 1032
>sp|Q5QMN5|RDR3_ORYSJ Probable RNA-dependent RNA polymerase 3 OS=Oryza sativa subsp.
japonica GN=RDR3 PE=2 SV=2
Length = 1153
Score = 86.7 bits (213), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 156/680 (22%), Positives = 266/680 (39%), Gaps = 146/680 (21%)
Query: 155 FCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRI 214
F GP I + L+ D DN L + F+ + D TD S T Y ++
Sbjct: 382 FKGPYIENTRTHLQKVVGD-DNVLVVKFMGKLSDT--KTDFS---------TYCEHYHKV 429
Query: 215 LSTLRNGILIGDRKFEFLAFSSSQ------------------------LRESSAWMFASR 250
+GI++G R++ F + +R S W
Sbjct: 430 A---EDGIVLGLRRYRFFVYKDGGKEEKLKQEKIEDKNKCTSPVMCYFVRTESGWNMDEP 486
Query: 251 Y---GLTAAEIREWMGNFREIRNVAKYAAR----LGQSFSSSKETLSVHMDEIEIIPDVK 303
Y G T + RE + +AKY AR L ++ + + +V++ I+ P +
Sbjct: 487 YILSGRTVGQARELFMHISSAPTLAKYMARFALILSKTITWDADLSAVYVRRIKDEPCMD 546
Query: 304 -----IEIGKTKYVFSDGIGKVSAEFARKVASKCG----LKDNPP-SAFQIRYGG--YKG 351
+ + + +DG G VS + A + LK P F++ Y G KG
Sbjct: 547 RHGNVVHKDQEPLIHTDGTGLVSVDLALNCPTSIFKGKFLKPQPLLMQFRLFYNGSAVKG 606
Query: 352 VVAAD---PTSSKKLSLRDSMRKYESE-----------------------------LTKL 379
V D P ++ + +R SM K E+ +
Sbjct: 607 TVLVDRRLPPAT--ILIRPSMVKIETHPELSGVRSVNSSEIVSARNAKKSLSGVQSVNSF 664
Query: 380 DVLAWS-KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL- 437
++++ S + + +R LI+LL G+ +E F + + A+ + D ++AL +
Sbjct: 665 EIVSTSNRPRRTLTSRFLITLLCYGGVPEEYFLELLQSAIEGAENACYD---YEDALRIA 721
Query: 438 MSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLD 497
S + + + +I P E +L L F A + + + +I I +M D
Sbjct: 722 FSYADMEDSMSARMILSGIPLEESYLQHRLD-FMAQQERKGIKQGKIPIDECYYLMDTTD 780
Query: 498 ETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 557
T TL +V V + E+ FS G V+V K+P LH GD+ VL
Sbjct: 781 PTGTLRPNEVCVIL----------ENGQFS-----------GDVLVYKHPGLHFGDIHVL 819
Query: 558 KAVNVPALH-----HMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDPP 612
KA + L + ++FP G R +E + SD DGDIY+V + +L+ P
Sbjct: 820 KATYIRDLEKEYVGYAKYAILFPISGPRSLADEMANSDFDGDIYWVSKNPKLLE-HFKPS 878
Query: 613 MDYTPAQSMQLDHDVQIEDVEE-----------YFTNYIVNDSLGIIANAHTVFADRE-- 659
+ A + + +D E T + + +LG A++ + DR
Sbjct: 879 EPWVQAIKPKKTKQKKPQDCNESKLERLLFHEFLKTRFTPSFALGTAADSWLAYMDRLLT 938
Query: 660 ------PRKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYES 713
+K E L+L + + +A+D PKTG IP L VK+YP FM + +Y S
Sbjct: 939 DSLDEIEKKLIEEKMLKLVDLYYLALDAPKTGNKVNIPSDLMVKQYPHFMGR--SFSYHS 996
Query: 714 QNVIGKLFRAVKDIAPHTSC 733
+++G+++ +D+ SC
Sbjct: 997 SSILGQIYDKAEDVESLRSC 1016
>sp|Q11187|U518_CAEEL UPF0518 protein C05D11.8 OS=Caenorhabditis elegans GN=C05D11.8 PE=3
SV=1
Length = 873
Score = 35.0 bits (79), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%)
Query: 405 IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLS 464
+W+++FE K L+ L+DP ELMS EN + LL+ EP +
Sbjct: 25 VWEQLFETKWSVVSNILERKLSDPEHKVVYDELMSLLENMTNMCTLLMLEANSQPEPIIG 84
Query: 465 MMLQTFRASKLLE 477
+L F ++LE
Sbjct: 85 PILDKFFTEQILE 97
>sp|Q038V7|ADDA_LACC3 ATP-dependent helicase/nuclease subunit A OS=Lactobacillus casei
(strain ATCC 334) GN=addA PE=3 SV=1
Length = 1234
Score = 33.9 bits (76), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 692 PHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCI--RLFTKEVARRSYD 747
P L++ +Y F + P P + ++ + FR+ K++ T+ I ++ EV SYD
Sbjct: 443 PQLFIHKYQTFQDAPTDPAAPERIILAENFRSTKNVLAFTNLIFSQIMDPEVGDLSYD 500
>sp|B3WEJ1|ADDA_LACCB ATP-dependent helicase/nuclease subunit A OS=Lactobacillus casei
(strain BL23) GN=addA PE=3 SV=1
Length = 1234
Score = 33.9 bits (76), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 692 PHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCI--RLFTKEVARRSYD 747
P L++ +Y F + P P + ++ + FR+ K++ T+ I ++ EV SYD
Sbjct: 443 PQLFIHKYQTFQDAPTDPAAPERIILAENFRSTKNVLAFTNLIFSQIMDPEVGDLSYD 500
>sp|Q255H6|AROB_CHLFF 3-dehydroquinate synthase OS=Chlamydophila felis (strain Fe/C-56)
GN=aroB PE=3 SV=1
Length = 379
Score = 33.5 bits (75), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 20 KESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFY 79
K+ R +L G + +L+ + P G+A+ ++ +I + +++G + P L Y
Sbjct: 230 KDKNLRKILNFGHTIAHALETLSEGHIPHGLAVSVGMMIEIKISLESGIMKNPSLVEQLY 289
Query: 80 RLVDPYRAPVSISCI-----EHALDKLYH 103
L + + P ++ + +H L + YH
Sbjct: 290 NLSNNFNLPTTLEELRDLIPQHFLHRFYH 318
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 344,708,435
Number of Sequences: 539616
Number of extensions: 15027085
Number of successful extensions: 33448
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 33366
Number of HSP's gapped (non-prelim): 23
length of query: 904
length of database: 191,569,459
effective HSP length: 127
effective length of query: 777
effective length of database: 123,038,227
effective search space: 95600702379
effective search space used: 95600702379
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)