Query 002586
Match_columns 904
No_of_seqs 283 out of 488
Neff 6.1
Searched_HMMs 13730
Date Tue Mar 26 16:41:38 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002586.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1304-1308//hhsearch_scop/002586hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1smyd_ e.29.1.2 (D:) RNA-poly 73.6 0.95 6.9E-05 20.1 2.4 54 535-600 692-748 (1504)
2 d1twfa_ e.29.1.2 (A:) RBP1 {Ba 71.7 1.5 0.00011 18.7 3.1 39 810-851 1341-1379(1449)
3 d1f60b_ d.58.12.1 (B:) Guanine 12.1 24 0.0018 10.5 3.7 58 207-267 20-77 (90)
4 d1b64a_ d.58.12.1 (A:) Guanine 10.6 27 0.002 10.2 4.4 58 207-267 21-78 (91)
5 d1gtma2 c.58.1.1 (A:3-180) Glu 8.1 35 0.0026 9.4 -0.2 17 343-359 95-111 (178)
6 d1gh8a_ d.58.12.1 (A:) aEF-1be 8.1 38 0.0028 9.2 5.2 59 207-268 19-77 (89)
7 d1v9la2 c.58.1.1 (A:4-179) Glu 6.5 42 0.003 8.9 -0.4 15 344-358 96-110 (176)
8 d1b26a2 c.58.1.1 (A:4-178) Glu 6.2 54 0.0039 8.1 0.5 20 340-359 91-110 (175)
9 d1leha2 c.58.1.1 (A:1-134) Leu 5.0 71 0.0052 7.3 0.8 13 346-358 76-88 (134)
10 d1nnxa_ b.40.10.1 (A:) Hypothe 4.3 85 0.0062 6.8 -0.0 14 307-320 50-63 (106)
No 1
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus [TaxId: 274]}
Probab=73.61 E-value=0.95 Score=20.14 Aligned_cols=54 Identities=28% Similarity=0.524 Sum_probs=40.1
Q ss_pred EEEEE-EEEEEECCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCC--CCCCCCCEEEEEE
Q ss_conf 27731-599971898899870489972189787789829956999999998767--9989998389962
Q 002586 535 FIVQG-LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECS--GSDLDGDIYFVCW 600 (904)
Q Consensus 535 ~vi~G-~VlV~RnP~lhPGDIr~v~AV~~P~L~hl~dvIVFp~kG~Rplps~ls--GGDLDGD~y~ViW 600 (904)
.++.| .||.-|.|.||.--|+=.+++-.|.- - =|=||+-|+ ..|+|||+-+|--
T Consensus 692 hli~GD~VL~NRQPTLHR~SImAh~~~l~~gk-T-----------iRLnp~vC~pyNADFDGDEMNvHv 748 (1504)
T d1smyd_ 692 EVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQ-S-----------IQLHPLVCEAFNADFDGDQMAVHV 748 (1504)
T ss_dssp HHHSSCCEEEECSSCCSGGGEEEEEECCBSSS-S-----------EEECSGGGTTTTCCSSSCEEEEEC
T ss_pred EEECCCEEEECCCCCCCCCEEEEEEEEECCCC-E-----------EEECCCCCCCCCCCCCCCEEEEEC
T ss_conf 13559888746888636151057888970784-3-----------662421245555788774689865
No 2
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=71.68 E-value=1.5 Score=18.68 Aligned_cols=39 Identities=13% Similarity=-0.064 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999999999611399993549899998745203665
Q 002586 810 GMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPD 851 (904)
Q Consensus 810 ~~~~~~l~~~~r~~f~~~~~~~~~~~~~~~a~A~Y~vty~~~ 851 (904)
..+-..+-+|.+..|...+..-+.-.+.-.|..| |+...
T Consensus 1341 EAar~~ii~EI~~V~~~~Gi~Id~rHi~LIad~M---T~~G~ 1379 (1449)
T d1twfa_ 1341 EAGRAALYKEVYNVIASDGSYVNYRHMALLVDVM---TTQGG 1379 (1449)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHT---TTBSS
T ss_pred HHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHH---CCCCE
T ss_conf 9999999999999998659588799999999997---75885
No 3
>d1f60b_ d.58.12.1 (B:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.14 E-value=24 Score=10.49 Aligned_cols=58 Identities=7% Similarity=0.165 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHCCEEECCEEEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 3559999999872392873516899430589787671899971999999999998279876
Q 002586 207 RTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFRE 267 (904)
Q Consensus 207 ~~~i~~ri~~~L~~Gi~I~gr~y~FLa~S~SqlR~~s~wF~a~~~~~t~~~Ir~wlG~f~~ 267 (904)
...+.+.++.++.+|+.++....+.+||+ ++.=.+.|.-+......+++.+.+..+..
T Consensus 20 l~~l~~~ik~i~~~gl~~g~~~~~PiafG---lkkL~i~~vveDd~~~~D~lee~i~~~Ed 77 (90)
T d1f60b_ 20 LEEMVANVKAIEMEGLTWGAHQFIPIGFG---IKKLQINCVVEDDKVSLDDLQQSIEEDED 77 (90)
T ss_dssp HHHHHHHHHTCCCTTEEEEEEEEEEEETT---EEEEEEEEEEETTTCCHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEEEEEEE---EEEEEEEEEEEECCCCHHHHHHHHHHHCC
T ss_conf 99999999874768667867899998624---46499999999287487999998774229
No 4
>d1b64a_ d.58.12.1 (A:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.60 E-value=27 Score=10.16 Aligned_cols=58 Identities=10% Similarity=0.185 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHCCEEECCEEEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 3559999999872392873516899430589787671899971999999999998279876
Q 002586 207 RTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFRE 267 (904)
Q Consensus 207 ~~~i~~ri~~~L~~Gi~I~gr~y~FLa~S~SqlR~~s~wF~a~~~~~t~~~Ir~wlG~f~~ 267 (904)
...+.+.++.++.+|+.++....+.+||+- +.=.+.|.-+.+....+++-+.+..+..
T Consensus 21 l~~l~~~vk~i~~~gl~wg~~k~~PIaFGl---kkL~i~~vveDd~~~~D~lee~i~~~Ed 78 (91)
T d1b64a_ 21 MAKLEECVRSIQADGLVWGSSKLVPVGYGI---KKLQIQCVVEDDKVGTDMLEEQITAFED 78 (91)
T ss_dssp HHHHHHHHHHCCCTTCEEEEEEEEESSSSC---EEEEEEEEECTTSSCHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEEEEEEEE---EEEEEEEEEEECCCCHHHHHHHHHHHCC
T ss_conf 999999999745465737127899887444---6399999999487586999999886229
No 5
>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=8.11 E-value=35 Score=9.41 Aligned_cols=17 Identities=41% Similarity=0.808 Sum_probs=12.9
Q ss_pred EEECCCCEEEEEECCCC
Q ss_conf 99516953899947999
Q 002586 343 QIRYGGYKGVVAADPTS 359 (904)
Q Consensus 343 QiR~gG~KGvl~vdp~~ 359 (904)
-+.+||+||.+.+||..
T Consensus 95 ~lp~GG~Kggi~~dP~~ 111 (178)
T d1gtma2 95 DLPYGGGKGGIIVDPKK 111 (178)
T ss_dssp TCSCEEEEEEEECCGGG
T ss_pred CCCCCCCCEEEECCCCC
T ss_conf 57778875057248778
No 6
>d1gh8a_ d.58.12.1 (A:) aEF-1beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=8.06 E-value=38 Score=9.17 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHCCEEECCEEEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCC
Q ss_conf 35599999998723928735168994305897876718999719999999999982798765
Q 002586 207 RTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREI 268 (904)
Q Consensus 207 ~~~i~~ri~~~L~~Gi~I~gr~y~FLa~S~SqlR~~s~wF~a~~~~~t~~~Ir~wlG~f~~i 268 (904)
...+.+.++.++..|+.+++...+.+||+ |+.=.+.+.-+......+.+-+.+..++..
T Consensus 19 l~~l~~~ik~~~~~g~~~~~~~~~PiaFG---Lk~L~v~~vv~D~~g~~D~lee~i~~ie~V 77 (89)
T d1gh8a_ 19 LEALKKEIQERIPEGTELHKIDEEPIAFG---LVALNVMVVVGDAEGGTEAAEESLSGIEGV 77 (89)
T ss_dssp HHHHHHHHHHHSCTTSEECCCCEEECSSS---CEEEEEEEEESSSCGGGGHHHHHHTTSCSS
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEEEEECC---EEEEEEEEEEECCCCCHHHHHHHHHCCCCC
T ss_conf 99999999864658767988898878726---174999999981883768999998455897
No 7
>d1v9la2 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}
Probab=6.53 E-value=42 Score=8.89 Aligned_cols=15 Identities=53% Similarity=1.019 Sum_probs=10.1
Q ss_pred EECCCCEEEEEECCC
Q ss_conf 951695389994799
Q 002586 344 IRYGGYKGVVAADPT 358 (904)
Q Consensus 344 iR~gG~KGvl~vdp~ 358 (904)
+.+||+||++.+||.
T Consensus 96 lp~GGgKggI~~dp~ 110 (176)
T d1v9la2 96 LPYGGAKGAVRVDPK 110 (176)
T ss_dssp CSCCEEEEEECSCGG
T ss_pred CCCCCCCCEEECCCC
T ss_conf 886576521435887
No 8
>d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}
Probab=6.18 E-value=54 Score=8.15 Aligned_cols=20 Identities=35% Similarity=0.694 Sum_probs=14.2
Q ss_pred CEEEEECCCCEEEEEECCCC
Q ss_conf 25899516953899947999
Q 002586 340 SAFQIRYGGYKGVVAADPTS 359 (904)
Q Consensus 340 SafQiR~gG~KGvl~vdp~~ 359 (904)
++.-+.+||.||.+.+||..
T Consensus 91 A~~~lP~GGgKggi~~dP~~ 110 (175)
T d1b26a2 91 AVMNLPFGGGKGGVRVDPKK 110 (175)
T ss_dssp HHHTCSCEEEEEEEECCGGG
T ss_pred HHHCCCCCCCCCEEECCCCC
T ss_conf 85077645654225348778
No 9
>d1leha2 c.58.1.1 (A:1-134) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}
Probab=4.95 E-value=71 Score=7.31 Aligned_cols=13 Identities=46% Similarity=0.708 Sum_probs=0.0
Q ss_pred CCCCEEEEEECCC
Q ss_conf 1695389994799
Q 002586 346 YGGYKGVVAADPT 358 (904)
Q Consensus 346 ~gG~KGvl~vdp~ 358 (904)
+||.||++..||.
T Consensus 76 ~GGgK~vI~~dp~ 88 (134)
T d1leha2 76 LGGGKTVIIGDPF 88 (134)
T ss_dssp CEEEEEEEESCTT
T ss_pred CCCCCEEEECCCC
T ss_conf 8885565545988
No 10
>d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]}
Probab=4.27 E-value=85 Score=6.80 Aligned_cols=14 Identities=36% Similarity=0.722 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 78331125653101
Q 002586 307 GKTKYVFSDGIGKV 320 (904)
Q Consensus 307 ~g~~~~fTDGvG~I 320 (904)
+.+.|.|+||.|.|
T Consensus 50 ~~d~Y~F~D~TG~I 63 (106)
T d1nnxa_ 50 SDDLYVFKDASGTI 63 (106)
T ss_dssp ETTEEEEEETTEEE
T ss_pred CCCEEEEECCCCCE
T ss_conf 89538997898769
Done!