Query 002587
Match_columns 904
No_of_seqs 264 out of 1387
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:01:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07990 NABP: Nucleic acid bi 100.0 1.3E-89 2.8E-94 749.7 23.1 376 285-697 1-384 (385)
2 KOG1488 Translational represso 100.0 1.6E-49 3.5E-54 448.9 19.3 224 679-903 155-382 (503)
3 KOG1488 Translational represso 100.0 5.4E-43 1.2E-47 396.0 14.2 231 672-903 219-461 (503)
4 cd07920 Pumilio Pumilio-family 100.0 6.7E-39 1.5E-43 344.6 23.6 230 673-903 50-288 (322)
5 cd07920 Pumilio Pumilio-family 100.0 8.8E-38 1.9E-42 335.9 21.7 201 702-903 10-210 (322)
6 COG5099 RNA-binding protein of 100.0 3.4E-36 7.3E-41 356.9 17.5 195 708-903 447-642 (777)
7 COG5099 RNA-binding protein of 100.0 2.5E-33 5.4E-38 332.6 16.9 234 670-903 478-723 (777)
8 KOG2049 Translational represso 100.0 7.1E-33 1.5E-37 316.3 16.7 231 671-903 255-494 (536)
9 KOG2049 Translational represso 100.0 1.5E-32 3.2E-37 313.7 13.9 207 696-903 211-421 (536)
10 KOG2050 Puf family RNA-binding 99.9 6.1E-23 1.3E-27 232.6 20.4 209 696-904 158-443 (652)
11 KOG2188 Predicted RNA-binding 99.7 6.2E-17 1.3E-21 185.8 19.6 195 705-900 339-604 (650)
12 KOG2050 Puf family RNA-binding 99.6 6.1E-15 1.3E-19 168.3 17.3 188 680-867 175-443 (652)
13 KOG2188 Predicted RNA-binding 99.5 2.7E-13 5.8E-18 156.3 16.8 101 696-796 93-220 (650)
14 KOG4574 RNA-binding protein (c 99.3 2.8E-12 6.1E-17 150.6 9.5 206 697-903 577-817 (1007)
15 KOG4574 RNA-binding protein (c 99.2 8.7E-12 1.9E-16 146.6 5.9 177 726-903 534-750 (1007)
16 PF00806 PUF: Pumilio-family R 98.1 1.7E-06 3.6E-11 65.7 2.2 34 736-769 2-35 (35)
17 PF00806 PUF: Pumilio-family R 97.8 8.5E-06 1.8E-10 61.8 1.8 26 845-870 3-28 (35)
18 smart00025 Pumilio Pumilio-lik 97.7 2.6E-05 5.7E-10 57.8 2.4 32 737-768 3-34 (36)
19 smart00025 Pumilio Pumilio-lik 97.4 0.00012 2.6E-09 54.3 3.0 34 700-733 2-35 (36)
20 PF08144 CPL: CPL (NUC119) dom 85.8 2 4.3E-05 43.4 6.5 64 840-903 58-131 (148)
21 PF08144 CPL: CPL (NUC119) dom 84.6 2 4.4E-05 43.4 5.9 31 732-762 58-88 (148)
22 PF04286 DUF445: Protein of un 84.4 45 0.00097 37.0 16.9 40 834-873 289-330 (367)
23 PF11510 FA_FANCE: Fanconi Ana 80.6 31 0.00067 38.3 13.5 137 716-870 39-191 (263)
24 PF04286 DUF445: Protein of un 80.2 59 0.0013 36.1 15.9 17 872-888 290-306 (367)
25 PRK05686 fliG flagellar motor 79.3 51 0.0011 37.5 15.2 26 820-845 202-227 (339)
26 PF10521 DUF2454: Protein of u 71.6 82 0.0018 34.8 13.9 150 723-894 107-279 (282)
27 cd07439 FANCE_c-term Fanconi a 70.1 1.4E+02 0.003 33.1 15.1 42 697-738 7-52 (254)
28 PF09770 PAT1: Topoisomerase I 69.7 7.8 0.00017 48.7 6.2 94 703-796 576-695 (808)
29 PRK05686 fliG flagellar motor 69.4 81 0.0018 35.9 13.6 145 720-869 116-287 (339)
30 PF05918 API5: Apoptosis inhib 68.7 53 0.0011 40.1 12.5 160 704-867 83-272 (556)
31 PF12231 Rif1_N: Rap1-interact 68.2 1.9E+02 0.0041 33.3 16.4 154 738-898 77-251 (372)
32 TIGR00207 fliG flagellar motor 65.4 1.8E+02 0.0039 33.3 15.4 85 784-869 199-284 (338)
33 PF12231 Rif1_N: Rap1-interact 65.0 1.2E+02 0.0027 34.8 14.1 89 727-818 152-243 (372)
34 PF02854 MIF4G: MIF4G domain; 64.1 90 0.0019 31.1 11.5 81 716-797 3-84 (209)
35 PF07165 DUF1397: Protein of u 60.5 83 0.0018 33.8 10.9 72 715-790 51-127 (213)
36 KOG2213 Apoptosis inhibitor 5/ 57.6 1.7E+02 0.0037 34.6 13.2 76 791-867 158-244 (460)
37 PF12460 MMS19_C: RNAPII trans 53.9 2.6E+02 0.0056 32.5 14.4 28 786-813 118-145 (415)
38 PF04078 Rcd1: Cell differenti 53.4 53 0.0011 36.6 8.1 29 839-867 204-232 (262)
39 KOG2072 Translation initiation 48.7 1.4E+02 0.003 38.2 11.3 46 815-860 174-219 (988)
40 PF07393 Sec10: Exocyst comple 48.2 3.2E+02 0.0069 34.2 14.8 29 819-847 216-244 (710)
41 PF08568 Kinetochor_Ybp2: Unch 48.2 3.9E+02 0.0085 33.0 15.4 54 832-885 453-506 (633)
42 PF11573 Med23: Mediator compl 48.0 88 0.0019 41.9 10.2 127 756-884 53-196 (1341)
43 KOG1059 Vesicle coat complex A 47.7 1.4E+02 0.003 37.7 11.0 72 798-869 366-442 (877)
44 PF05327 RRN3: RNA polymerase 46.4 1.8E+02 0.004 35.4 12.1 71 726-798 50-122 (563)
45 COG5240 SEC21 Vesicle coat com 43.5 6.3E+02 0.014 31.7 15.2 169 695-864 279-475 (898)
46 PLN03083 E3 UFM1-protein ligas 43.0 2.5E+02 0.0054 36.0 12.5 14 144-157 75-88 (803)
47 KOG2027 Spindle pole body prot 42.5 1.8E+02 0.0039 34.2 10.6 14 871-884 143-156 (388)
48 PF08625 Utp13: Utp13 specific 40.3 1.7E+02 0.0037 29.6 8.9 42 785-830 47-88 (141)
49 PRK15374 pathogenicity island 39.9 5E+02 0.011 32.0 13.8 56 845-900 532-590 (593)
50 KOG1059 Vesicle coat complex A 39.4 4.5E+02 0.0099 33.5 13.6 39 736-774 219-263 (877)
51 PTZ00429 beta-adaptin; Provisi 39.0 7.6E+02 0.017 31.6 16.0 23 847-869 356-378 (746)
52 TIGR00207 fliG flagellar motor 38.4 6.7E+02 0.014 28.8 16.6 125 714-846 79-225 (338)
53 PTZ00429 beta-adaptin; Provisi 38.2 4E+02 0.0087 34.0 13.4 22 704-725 357-378 (746)
54 KOG4368 Predicted RNA binding 38.0 5.8E+02 0.012 31.8 13.8 94 715-812 90-190 (757)
55 TIGR00400 mgtE Mg2+ transporte 37.7 2.1E+02 0.0045 33.8 10.4 13 789-801 107-119 (449)
56 PF09770 PAT1: Topoisomerase I 37.5 67 0.0015 40.6 6.8 94 775-868 576-695 (808)
57 PF09763 Sec3_C: Exocyst compl 34.3 6.4E+02 0.014 31.5 14.4 70 819-894 626-700 (701)
58 TIGR00400 mgtE Mg2+ transporte 33.8 1.9E+02 0.0041 34.2 9.3 93 715-807 21-113 (449)
59 KOG1070 rRNA processing protei 33.6 9.4E+02 0.02 33.2 15.6 32 707-738 1451-1486(1710)
60 PF08625 Utp13: Utp13 specific 33.2 2.8E+02 0.006 28.1 9.1 55 717-773 17-71 (141)
61 KOG1070 rRNA processing protei 32.1 7.8E+02 0.017 33.8 14.6 43 695-737 1459-1504(1710)
62 PF12348 CLASP_N: CLASP N term 32.0 4.3E+02 0.0092 27.5 10.7 47 783-830 90-137 (228)
63 smart00638 LPD_N Lipoprotein N 31.3 1E+03 0.022 28.8 15.2 13 889-901 561-573 (574)
64 PF10508 Proteasom_PSMB: Prote 31.2 1E+03 0.022 28.7 20.0 21 752-772 81-101 (503)
65 KOG1248 Uncharacterized conser 30.7 1.4E+03 0.03 30.8 16.4 28 714-741 718-745 (1176)
66 PF06248 Zw10: Centromere/kine 30.0 2.9E+02 0.0064 33.7 10.3 46 803-848 129-174 (593)
67 KOG0132 RNA polymerase II C-te 29.9 79 0.0017 39.9 5.4 84 778-869 36-136 (894)
68 KOG1240 Protein kinase contain 29.2 1E+03 0.023 32.2 14.9 59 695-753 458-525 (1431)
69 KOG2235 Uncharacterized conser 28.8 7.2E+02 0.016 31.3 12.7 30 752-781 519-548 (776)
70 KOG0166 Karyopherin (importin) 28.5 8.6E+02 0.019 29.9 13.4 189 713-903 192-429 (514)
71 KOG3821 Heparin sulfate cell s 27.5 7.9E+02 0.017 30.4 12.8 81 821-904 230-316 (563)
72 PF14911 MMS22L_C: S-phase gen 26.7 1.1E+03 0.024 27.8 14.2 166 676-850 159-348 (373)
73 KOG3759 Uncharacterized RUN do 26.2 8.3E+02 0.018 29.7 12.3 59 721-784 97-166 (621)
74 KOG2073 SAP family cell cycle 26.0 1.1E+03 0.024 30.7 14.3 24 848-871 358-381 (838)
75 PF08926 DUF1908: Domain of un 25.9 1.9E+02 0.0041 32.6 6.9 13 732-744 160-172 (282)
76 PF11510 FA_FANCE: Fanconi Ana 25.3 7.6E+02 0.016 27.7 11.5 79 786-868 145-228 (263)
77 COG4399 Uncharacterized protei 25.2 5.8E+02 0.013 29.9 10.7 176 717-901 154-339 (376)
78 KOG2219 Uncharacterized conser 25.2 4.8E+02 0.01 32.9 10.5 52 828-885 206-257 (864)
79 PF04858 TH1: TH1 protein; In 25.1 7.2E+02 0.016 31.0 12.3 77 801-877 484-561 (584)
80 KOG4368 Predicted RNA binding 25.1 1.2E+03 0.027 29.1 13.7 11 752-762 109-119 (757)
81 KOG2562 Protein phosphatase 2 25.1 2.8E+02 0.0061 33.4 8.4 81 782-866 220-318 (493)
82 KOG3811 Transcription factor A 25.1 4.4E+02 0.0095 31.4 9.9 40 849-894 375-414 (434)
83 KOG2051 Nonsense-mediated mRNA 24.8 4.8E+02 0.01 34.5 10.9 19 780-798 598-616 (1128)
84 PF01603 B56: Protein phosphat 24.1 1.2E+03 0.026 27.3 16.7 69 825-894 279-354 (409)
85 PF14666 RICTOR_M: Rapamycin-i 24.0 3.6E+02 0.0078 29.4 8.6 31 712-743 83-113 (226)
86 PF03448 MgtE_N: MgtE intracel 23.8 60 0.0013 29.6 2.4 15 825-839 78-92 (102)
87 PF11573 Med23: Mediator compl 23.6 3.8E+02 0.0081 36.4 10.1 41 719-759 52-92 (1341)
88 PRK07003 DNA polymerase III su 23.4 1.3E+03 0.029 29.9 14.2 19 754-772 238-256 (830)
89 cd04374 RhoGAP_Graf RhoGAP_Gra 23.1 1.3E+02 0.0027 32.0 4.9 71 824-903 128-202 (203)
90 smart00543 MIF4G Middle domain 23.0 7.6E+02 0.016 24.6 11.4 15 783-797 68-82 (200)
91 KOG1992 Nuclear export recepto 22.9 8E+02 0.017 31.9 12.0 53 751-803 702-759 (960)
92 KOG2549 Transcription initiati 22.4 7.2E+02 0.016 30.8 11.2 59 697-759 205-263 (576)
93 PRK07003 DNA polymerase III su 22.3 3.5E+02 0.0076 34.8 9.0 11 750-760 160-170 (830)
94 PF04078 Rcd1: Cell differenti 22.3 1.1E+03 0.025 26.4 17.1 26 876-901 204-229 (262)
95 PF02854 MIF4G: MIF4G domain; 22.3 3.8E+02 0.0082 26.7 8.0 17 875-891 169-185 (209)
96 PF03299 TF_AP-2: Transcriptio 22.0 2.6E+02 0.0057 30.1 7.0 48 699-746 41-97 (209)
97 KOG2280 Vacuolar assembly/sort 21.9 1.3E+03 0.027 29.9 13.3 67 704-770 540-612 (829)
98 KOG3252 Uncharacterized conser 21.4 4.9E+02 0.011 28.1 8.5 27 852-883 136-162 (217)
99 PF10521 DUF2454: Protein of u 20.9 1E+03 0.022 26.4 11.5 53 748-800 95-154 (282)
100 PF10508 Proteasom_PSMB: Prote 20.4 1.5E+03 0.033 27.2 15.2 34 824-859 203-237 (503)
101 PRK07764 DNA polymerase III su 20.3 4E+02 0.0086 34.4 9.2 7 693-699 122-128 (824)
No 1
>PF07990 NABP: Nucleic acid binding protein NABP; InterPro: IPR012940 This domain occurs in some putative nucleic acid binding proteins. One of these proteins has been partially characterised [] and contains two putative phosphorylation sites and a possible dimerisation / leucine zipper domain.
Probab=100.00 E-value=1.3e-89 Score=749.73 Aligned_cols=376 Identities=58% Similarity=0.963 Sum_probs=363.7
Q ss_pred cCCCCCCCCCCccccccCCCCCcCCCCCCCCCCCCCCChHHHHHHhcCCCCCCCCCCcccccccchhhhhhhhhcc-cCC
Q 002587 285 RAPSPRIPTAGVGRASSMDKRTVSGPLPLNGVSPSLKDSAEIVAALSGLNLSTDGVADQENNSRSQNQHEIDDRHS-LFN 363 (904)
Q Consensus 285 r~~s~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~ls~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 363 (904)
|+|||||||||+ |+.+.|||++.|+++||+++|+++|+|||+|||||||||+++++++|+|+|+|+|+|||||++ ||+
T Consensus 1 R~PSp~lpPIG~-Rv~s~eKk~~~g~~sfn~~SS~~~e~aDlvAALSGLNLS~~~~~~ee~~~qSqlqqdvdnqq~~lf~ 79 (385)
T PF07990_consen 1 RAPSPCLPPIGV-RVGSVEKKNNGGSSSFNGVSSGINESADLVAALSGLNLSGNRAADEENHMQSQLQQDVDNQQDFLFN 79 (385)
T ss_pred CCCCCCCCCccc-cccchhcccccCCcccccccCCCCcHHHHHHHHhcCCcCcCccccccccchHHHHHHHHHhhhhhhc
Confidence 899999999999 999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCCCccccccCccccCccccccccccccCCCCCCCCCCCCCCCccccccccccccccccccCCCCccCCCCCCCccCCCC
Q 002587 364 LQGDSRHMKQHPFLGRSESGHLLMHSASHSTKGSYPNMGKSGVGIDMNNASLMADGHKSALSSSNSYLKGPCTPTLNGGG 443 (904)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (904)
+|++|+|.+||.|+++++++|+++| ++++..+++.++|+|++.++.++.++
T Consensus 80 ~q~~q~~~~Qq~~~~~se~~~l~~~-----------------------------e~~~a~~~~~~s~~~~~~~s~~~~~g 130 (385)
T PF07990_consen 80 VQGGQNQGNQQSYMKKSESGHLNAP-----------------------------ELQKAAFPSGNSYFKNSNASKLSGGG 130 (385)
T ss_pred CccchhhhhhHHHhhccchhhcccc-----------------------------ccccccCCCccccccCCCcccccCCC
Confidence 9999999999999999999999875 56778888899999999999999999
Q ss_pred CCCCCCccCCCCCCcCCCCCCCcccCCCCCCCCCCCCCCCCCCCccchhhHhhhhhcCCCCCccccccCCCCchhhhhhH
Q 002587 444 NSPSHHQVMGNMNSAFSNFSLNGYSMNPSSPSMMGSPIGSGNLPPLYENAAAASAMAGNGLDARTLASLGLGPNVMAAAA 523 (904)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (904)
..+..||+++.++..+ +||++||++|+||.+++++|++|+|||+++++++++.+++++|++| +++.++++....
T Consensus 131 ~~~~~~q~~~~~n~~~-----~gy~~n~~~~s~~~~~~~~gn~p~~fd~~~~~s~~~~~~~~s~~~g-~~~~s~~~~~~~ 204 (385)
T PF07990_consen 131 GSPFPYQNSDNPNSSF-----GGYALNPALPSMMASQLNNGNIPPLFDNSAAASALASPGMDSRSLG-GGLDSGGNQGAS 204 (385)
T ss_pred CCCCcccCCCcccccc-----cccccCccchhhhhccccCCCCCccccccccchhhccCCCcccccC-Cccccccccccc
Confidence 9999999988877766 8999999999999999999999999999999999999999999999 899999887888
Q ss_pred hhhhhcccccCCCCCCCCCCCCChHHHhhhccchHHHHHhhhcCCCCcc---cCCCccchhHHHHHhhhhcccccccccC
Q 002587 524 ELQSMNRLGNHTAGSALQAPLMDPLYLQYLRSNEYAAAQVASLNDPAMD---IGNSYMDLLGLQKAYLGALLSPQKSQYG 600 (904)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 600 (904)
|+++++|+|||+++.++|+||+||+|+||||+++|++++++++.||+++ +|++++||++.||+||++||++||+||+
T Consensus 205 d~~~l~r~gnq~~g~~lq~~~~DP~Y~Qylq~~~~aa~~~a~~~dP~~~R~~~G~s~~dl~~~qKayl~~lL~~QK~Qy~ 284 (385)
T PF07990_consen 205 DGQNLNRFGNQVAGSALQSPFVDPLYLQYLQAPEYAAQQAAAQNDPSVDRNYMGSSYMDLLGLQKAYLEALLAQQKSQYG 284 (385)
T ss_pred chhhhhhhcccccCcccCCCCCCchHHHHhccccchhhhhhccCCcccccCCcCccccchHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999997799999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCCCCCCCCCcCCCCCCC----CCCCCCCCCCCCCcCCCCCCCCCCCccccCCCCCCCCcccCCCCCC
Q 002587 601 VPYLNKSGSLNNNLYGNPAFGLGMSYPGGP----LLPNSPVGSGSPVRHGDRNMRFPSGMRNLSGGVMGPWHSEAGGSLD 676 (904)
Q Consensus 601 ~~~~~k~g~~~~~y~~~p~~g~~~~y~~~~----~~p~~~~~~~sp~~~~~rn~r~~s~~r~~~gg~~~~w~~d~~~~m~ 676 (904)
+|+ .|+|.++++|||+|.||++|+|||+| +||++|+|+++|++++||++||++++|++.||.+++||.|.+++|+
T Consensus 285 ~P~-~~~~~~n~~y~gnp~~G~gm~Y~gsplaspvlPsspvG~gsp~r~~er~~R~~s~mRn~~GG~~GsW~~d~g~~~d 363 (385)
T PF07990_consen 285 VPL-KKSGSMNHGYYGNPSYGLGMPYPGSPLASPVLPSSPVGPGSPLRHNERNMRFPSGMRNSSGGSMGSWHSDAGGNMD 363 (385)
T ss_pred Ccc-ccCCCCCCCCCCCCCccccCCCCCCCCcCCCCCCCCCCCCCCCcCCccccccCccccccccccccccccccccccc
Confidence 999 88888999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHhhcCcccccHH
Q 002587 677 ESFASSLLDEFKSNKTKCFEL 697 (904)
Q Consensus 677 D~fgS~lLEef~snk~r~~~L 697 (904)
++|++.||||||++|+|+|||
T Consensus 364 ~~~~sSlLEEFKsNKtr~FEL 384 (385)
T PF07990_consen 364 ENFASSLLEEFKSNKTRSFEL 384 (385)
T ss_pred ccchhHHHHHHhcCCccceec
Confidence 999999999999999999987
No 2
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-49 Score=448.87 Aligned_cols=224 Identities=63% Similarity=1.004 Sum_probs=214.1
Q ss_pred hhhHHHHHhhcC-cccccHHHHHHHHHHHHhhCcccCHHHHHHhhcCCH-HHHHHHHHHHHHhHHHhhcccccchHHHHH
Q 002587 679 FASSLLDEFKSN-KTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATT-EEKNMVFQEIMPQALSLMTDVFGNYVIQKF 756 (904)
Q Consensus 679 fgS~lLEef~sn-k~r~~~LeeI~G~IveLA~Dq~GSRvLQKlLE~as~-Eer~~IfeEIlp~i~~Lm~D~fGNyVVQKL 756 (904)
..+.+++.+.+. ..+.+.+.++.+++++|++||+||||||+.|+.++. +++..||++|.+.+.+||+|.||||||||+
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~~~v~f~~Dq~GsrfiQqkl~~~~~~~ek~~if~ei~~~~~~L~~dvFGNyvIQkf 234 (503)
T KOG1488|consen 155 GPSFLLDPFRSNSLSKTLELVDIPGHLVEFAKDQHGSRFIQQKLETASDNEEKQAVFDEILPPALELMTDVFGNYVIQKF 234 (503)
T ss_pred CCCccccccccccccccccccccCCCceeecCCcccchHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 446777777777 667788889999999999999999999999999998 999999999999999999999999999999
Q ss_pred HhhCCHHHHHHHHHHHHHHHHHHhhcccccHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhCCCchHHHHHhhhcCChhH
Q 002587 757 FEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDA 836 (904)
Q Consensus 757 fE~~s~eqr~~Li~~L~g~IveLS~hkyGSrVVQKLLE~~~~eqk~~LVeeL~~~~l~La~DqnGNhVIQK~LE~~p~e~ 836 (904)
||+++.+++..|...++++++.||+|+||||||||+||.++.+.+.+|++||++++++|++||+||||||||||+.+++.
T Consensus 235 fE~gt~~q~~~l~~~~~g~v~~Lsld~ygCRVIQkale~id~~~~~~Li~ELd~~vl~~v~DQngnHViQK~ie~~p~~~ 314 (503)
T KOG1488|consen 235 FEHGTEDQRNLLHSQIKGHVLELSLDMYGCRVIQKALEKVDVSLQIQLIDELDGHLLKCVKDQNGNHVIQKCIETLPPDA 314 (503)
T ss_pred hccCCHHHHHHHHHHHHhhhhhhhcccccchhHHHHHHhcCHHHHHHHHHHHHhhHHHHHhhcccceehhhhhhccChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH--HHHHHhcCcchhHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhcCcchhHHHHHhcC
Q 002587 837 IQFIVLTFYD--QVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQVCFG 903 (904)
Q Consensus 837 r~~II~~Llg--qlveLSthKYGSrVVQK~Le~~~d~~~kk~II~EIl~nl~~LaqDqYGNYVVQ~ILE 903 (904)
+.+|++.|.+ ++..||+|||||||||++||+|..+++ ..|++||..++..|++|+||||||||||+
T Consensus 315 ~~Fiv~~f~~~~~~~~ls~~~YGCRVIQr~lE~c~~~~~-~~i~~ei~~~~~~L~~dQygNYVIQHVie 382 (503)
T KOG1488|consen 315 WQFIVDFFSGDDNLLELSTHKYGCRVIQRILEHCSEDQK-QPLMEEIIRNCDQLAQDQYGNYVIQHVIE 382 (503)
T ss_pred HHHHHHHhcCCCceeEeeccCcccHHHHHHhhcCChHhh-hHHHHHHHHHHHHHHhhhhhhHHHHHHHh
Confidence 9999999999 999999999999999999999986654 56999999999999999999999999986
No 3
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-43 Score=396.01 Aligned_cols=231 Identities=29% Similarity=0.460 Sum_probs=218.3
Q ss_pred CCCCCchhhhHHHHHhhc---CcccccHHHHHHHHHHHHhhCcccCHHHHHHhhcCCHHHHHHHHHHHHHhHHHhhcccc
Q 002587 672 GGSLDESFASSLLDEFKS---NKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVF 748 (904)
Q Consensus 672 ~~~m~D~fgS~lLEef~s---nk~r~~~LeeI~G~IveLA~Dq~GSRvLQKlLE~as~Eer~~IfeEIlp~i~~Lm~D~f 748 (904)
..+|+|.||++++|+|.+ .+++..+...+++++.+||.|++|||||||.||..+.+....+++||-.++..+++|++
T Consensus 219 ~~L~~dvFGNyvIQkffE~gt~~q~~~l~~~~~g~v~~Lsld~ygCRVIQkale~id~~~~~~Li~ELd~~vl~~v~DQn 298 (503)
T KOG1488|consen 219 LELMTDVFGNYVIQKFFEHGTEDQRNLLHSQIKGHVLELSLDMYGCRVIQKALEKVDVSLQIQLIDELDGHLLKCVKDQN 298 (503)
T ss_pred HHHHHHHhcCchhhhhhccCCHHHHHHHHHHHHhhhhhhhcccccchhHHHHHHhcCHHHHHHHHHHHHhhHHHHHhhcc
Confidence 345899999999998763 45577778889999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHhhCCHHHHHHHHHHHHH--HHHHHhhcccccHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhCCCchHHHH
Q 002587 749 GNYVIQKFFEHGTASQVRELADQLTG--HVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQ 826 (904)
Q Consensus 749 GNyVVQKLfE~~s~eqr~~Li~~L~g--~IveLS~hkyGSrVVQKLLE~~~~eqk~~LVeeL~~~~l~La~DqnGNhVIQ 826 (904)
||||||||||+.+++.+.+|++.+.+ +++.||.|+|||||||++||+|.++++..|+++|..++..|+.|||||||||
T Consensus 299 gnHViQK~ie~~p~~~~~Fiv~~f~~~~~~~~ls~~~YGCRVIQr~lE~c~~~~~~~i~~ei~~~~~~L~~dQygNYVIQ 378 (503)
T KOG1488|consen 299 GNHVIQKCIETLPPDAWQFIVDFFSGDDNLLELSTHKYGCRVIQRILEHCSEDQKQPLMEEIIRNCDQLAQDQYGNYVIQ 378 (503)
T ss_pred cceehhhhhhccChHHHHHHHHHhcCCCceeEeeccCcccHHHHHHhhcCChHhhhHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCChhHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhcCcHHHHHHHHHHHHH-------HHHHHhcCcchhHHHH
Q 002587 827 KCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQ-------SVCMLAQDQYGNYVVQ 899 (904)
Q Consensus 827 K~LE~~p~e~r~~II~~LlgqlveLSthKYGSrVVQK~Le~~~d~~~kk~II~EIl~-------nl~~LaqDqYGNYVVQ 899 (904)
++|+++.++.+..|++.+.+++++|++|||+|+||||||.++. ...+..||+||+. .+..|+.|||||||||
T Consensus 379 HVie~g~~~~~~~I~~~l~~~ll~~Sq~KfASnVVEk~~~~a~-~~~r~~i~~Ei~~~~~~~~~~L~~mmkdQYgNYVVQ 457 (503)
T KOG1488|consen 379 HVIEHGSPYRDTIIIKCLLGNLLSMSQHKFASNVVEKAFLFAP-PLLRALIMNEIFPGYVEHPDALDIMMKDQYGNYVVQ 457 (503)
T ss_pred HHHhcCChhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHhcCCccCCccHHHHHHHHhhhhhHHH
Confidence 9999999988889999999999999999999999999999997 4567899999986 4889999999999999
Q ss_pred HhcC
Q 002587 900 VCFG 903 (904)
Q Consensus 900 ~ILE 903 (904)
++|+
T Consensus 458 kmi~ 461 (503)
T KOG1488|consen 458 KMID 461 (503)
T ss_pred HHHH
Confidence 9986
No 4
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=100.00 E-value=6.7e-39 Score=344.55 Aligned_cols=230 Identities=31% Similarity=0.540 Sum_probs=217.4
Q ss_pred CCCCchhhhHHHHHhh---cCcccccHHHHHHHHHHHHhhCcccCHHHHHHhhcCCHHHHHHHHHHHHHhHHHhhccccc
Q 002587 673 GSLDESFASSLLDEFK---SNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFG 749 (904)
Q Consensus 673 ~~m~D~fgS~lLEef~---snk~r~~~LeeI~G~IveLA~Dq~GSRvLQKlLE~as~Eer~~IfeEIlp~i~~Lm~D~fG 749 (904)
..+.|++|++++|++. +.+.+..+++.+.++++++|.|++|||+||++|+.++++++..|+++|.+++..|++|.||
T Consensus 50 ~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~g 129 (322)
T cd07920 50 ELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKDQNG 129 (322)
T ss_pred HHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccc
Confidence 3478999999999765 3466777899999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhcccccHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhCCCchHHHHHhh
Q 002587 750 NYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCI 829 (904)
Q Consensus 750 NyVVQKLfE~~s~eqr~~Li~~L~g~IveLS~hkyGSrVVQKLLE~~~~eqk~~LVeeL~~~~l~La~DqnGNhVIQK~L 829 (904)
|||||++|++++++++..|++.+.+++++|+.|+|||+|||++|+.+..+++..|+++|.+++..|+.|++||||||++|
T Consensus 130 n~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~~vvq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l 209 (322)
T cd07920 130 NHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEHCSEEQREPLLEEILEHALELVQDQFGNYVVQHVL 209 (322)
T ss_pred cHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhcCcHHHHHHHHHHHHH------HHHHHhcCcchhHHHHHhcC
Q 002587 830 ECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQ------SVCMLAQDQYGNYVVQVCFG 903 (904)
Q Consensus 830 E~~p~e~r~~II~~LlgqlveLSthKYGSrVVQK~Le~~~d~~~kk~II~EIl~------nl~~LaqDqYGNYVVQ~ILE 903 (904)
+..+++.++.|++.+.+++++|++|||||+|||+||+.+.. ..++.|+++++. ++..|++|+|||||||++|+
T Consensus 210 ~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~~-~~~~~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~ 288 (322)
T cd07920 210 ELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHASK-EERELIIDEILASGNETSALDTLMKDQYGNYVIQTALD 288 (322)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHCCH-HHHHHHHHHHhcCCCchhHHHHHhCCCcccHHHHHHHH
Confidence 99999999999999999999999999999999999999974 567889999964 78999999999999999986
No 5
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=100.00 E-value=8.8e-38 Score=335.92 Aligned_cols=201 Identities=58% Similarity=0.978 Sum_probs=120.2
Q ss_pred HHHHHHhhCcccCHHHHHHhhcCCHHHHHHHHHHHHHhHHHhhcccccchHHHHHHhhCCHHHHHHHHHHHHHHHHHHhh
Q 002587 702 GHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSL 781 (904)
Q Consensus 702 G~IveLA~Dq~GSRvLQKlLE~as~Eer~~IfeEIlp~i~~Lm~D~fGNyVVQKLfE~~s~eqr~~Li~~L~g~IveLS~ 781 (904)
|+++++|+|++|||+||++|+.++++++..||+++.+++.+||+|+|||||||++|++++++++..|++++.+++++|+.
T Consensus 10 ~~~~~l~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~ 89 (322)
T cd07920 10 GHIVEFAKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSL 89 (322)
T ss_pred cchhhccCCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcc
Confidence 55666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cccccHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhCCCchHHHHHhhhcCChhHHHHHHHHHHHHHHHHhcCcchhHHH
Q 002587 782 QMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVI 861 (904)
Q Consensus 782 hkyGSrVVQKLLE~~~~eqk~~LVeeL~~~~l~La~DqnGNhVIQK~LE~~p~e~r~~II~~LlgqlveLSthKYGSrVV 861 (904)
|+|||||||++|+.+..+++..|+++|.+++..|++|++||||||+||++.+++.++.|++.|.+++++|++|+|||+||
T Consensus 90 ~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~~vv 169 (322)
T cd07920 90 DMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVI 169 (322)
T ss_pred cchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCccccHHH
Confidence 66666666666666555555555566666666666666666666666665555555566666666666666666666666
Q ss_pred HHHHhhcCcHHHHHHHHHHHHHHHHHHhcCcchhHHHHHhcC
Q 002587 862 QRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQVCFG 903 (904)
Q Consensus 862 QK~Le~~~d~~~kk~II~EIl~nl~~LaqDqYGNYVVQ~ILE 903 (904)
|+||+.+. +..++.|+++|.+++..|+.|+|||||||++|+
T Consensus 170 q~~l~~~~-~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~ 210 (322)
T cd07920 170 QRCLEHCS-EEQREPLLEEILEHALELVQDQFGNYVVQHVLE 210 (322)
T ss_pred HHHHHhCC-HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHh
Confidence 66666554 233445555666665566666666666666553
No 6
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-36 Score=356.93 Aligned_cols=195 Identities=44% Similarity=0.724 Sum_probs=189.2
Q ss_pred hhCcccCHHHHHHhhcCCHHHHHHHHHHHHHhHHHhhcccccchHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhcccccH
Q 002587 708 SADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCR 787 (904)
Q Consensus 708 A~Dq~GSRvLQKlLE~as~Eer~~IfeEIlp~i~~Lm~D~fGNyVVQKLfE~~s~eqr~~Li~~L~g~IveLS~hkyGSr 787 (904)
++|++|||+|||+|+.-+.++.+.|+.++++.+.+||.|.|||||||||||+++++++..++..+.++++.|+.|+||||
T Consensus 447 ~~Dq~g~r~LQk~Lds~s~~~~~~~~~e~~d~~~eLs~d~fGNyliQK~fe~~s~~q~~~ml~~~~~~~~~ls~~~~Gtr 526 (777)
T COG5099 447 CKDQHGSRFLQKLLDSNSSPEIEVIFNEILDQLVELSSDYFGNYLIQKLFEYGSEIQKSIMLSKSSKHLVSLSVHKYGTR 526 (777)
T ss_pred cCCcHHHHHHHHHhcccchHHHHHHHHHHhhhhHHHHHhhhcchhhHHHHHhccHHHHHHHHHHhhhhHHHhhccccccH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcchHHHH-HHHHHHHHHHHHHhhCCCchHHHHHhhhcCChhHHHHHHHHHHHHHHHHhcCcchhHHHHHHHh
Q 002587 788 VIQKAIEVVELDQQT-QMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLE 866 (904)
Q Consensus 788 VVQKLLE~~~~eqk~-~LVeeL~~~~l~La~DqnGNhVIQK~LE~~p~e~r~~II~~LlgqlveLSthKYGSrVVQK~Le 866 (904)
|+||+|+++.++.+. .|+++|++.+..|++|++||||||||+++...+...+|++.+.++++++++|+|||||||+|+|
T Consensus 527 v~QK~id~~~t~~qi~~lv~~l~~~~~~li~dqngNHviqKci~~~~~~~~~fif~~~~~~~~~is~~r~Gs~vvq~~le 606 (777)
T COG5099 527 VLQKAIDIVSTDIQISLLVEELRPYCLQLIKDQNGNHVIQKCIEKFNKEKNQFIFDSINENLYDLSTHRYGSRVVQRCLE 606 (777)
T ss_pred HHHHHHhccCchhhHHHHHHHhhhhhHHHHHhccCCHHHHHHHHhcCccccchHHHHHHhhhHhhhccccccHHHHHHHH
Confidence 999999999988888 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCcchhHHHHHhcC
Q 002587 867 HCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQVCFG 903 (904)
Q Consensus 867 ~~~d~~~kk~II~EIl~nl~~LaqDqYGNYVVQ~ILE 903 (904)
+|..+ .++.|+++|+.+...|++|+||||||||+|+
T Consensus 607 ~~~~~-~~~~~~~~Ii~~~~~L~~dq~GNyvvq~il~ 642 (777)
T COG5099 607 NCNSE-DKENLVEEIISNSKYLSQDQYGNYVVQHILD 642 (777)
T ss_pred hccHh-HHHHHHHHHHHHHHhhccCCcchhhhhHHhh
Confidence 99754 4478999999999999999999999999996
No 7
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-33 Score=332.64 Aligned_cols=234 Identities=26% Similarity=0.442 Sum_probs=218.1
Q ss_pred cCCCCCCchhhhHHHHHhhc---CcccccHHHHHHHHHHHHhhCcccCHHHHHHhhcCCHHHHH-HHHHHHHHhHHHhhc
Q 002587 670 EAGGSLDESFASSLLDEFKS---NKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKN-MVFQEIMPQALSLMT 745 (904)
Q Consensus 670 d~~~~m~D~fgS~lLEef~s---nk~r~~~LeeI~G~IveLA~Dq~GSRvLQKlLE~as~Eer~-~IfeEIlp~i~~Lm~ 745 (904)
+...+|.|.||++++|++.+ ...+..++..+.+++++++.+++|||++||+++..+.++.. .|++++.+++..|.+
T Consensus 478 ~~~eLs~d~fGNyliQK~fe~~s~~q~~~ml~~~~~~~~~ls~~~~Gtrv~QK~id~~~t~~qi~~lv~~l~~~~~~li~ 557 (777)
T COG5099 478 QLVELSSDYFGNYLIQKLFEYGSEIQKSIMLSKSSKHLVSLSVHKYGTRVLQKAIDIVSTDIQISLLVEELRPYCLQLIK 557 (777)
T ss_pred hhHHHHHhhhcchhhHHHHHhccHHHHHHHHHHhhhhHHHhhccccccHHHHHHHhccCchhhHHHHHHHhhhhhHHHHH
Confidence 34456899999999998764 46678889999999999999999999999999999877665 999999999999999
Q ss_pred ccccchHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhcccccHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhCCCchHHH
Q 002587 746 DVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVI 825 (904)
Q Consensus 746 D~fGNyVVQKLfE~~s~eqr~~Li~~L~g~IveLS~hkyGSrVVQKLLE~~~~eqk~~LVeeL~~~~l~La~DqnGNhVI 825 (904)
|++|||||||||+.+..+....|++.+.+++++++.|+|||||||+|+|.+..+.+..++++|..++..|++|+||||||
T Consensus 558 dqngNHviqKci~~~~~~~~~fif~~~~~~~~~is~~r~Gs~vvq~~le~~~~~~~~~~~~~Ii~~~~~L~~dq~GNyvv 637 (777)
T COG5099 558 DQNGNHVIQKCIEKFNKEKNQFIFDSINENLYDLSTHRYGSRVVQRCLENCNSEDKENLVEEIISNSKYLSQDQYGNYVV 637 (777)
T ss_pred hccCCHHHHHHHHhcCccccchHHHHHHhhhHhhhccccccHHHHHHHHhccHhHHHHHHHHHHHHHHhhccCCcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCChhHHHHHHHHHHH-HHHHHhcCcchhHHHHHHHhhcCcHHHHHHHHHHHHH------H-HHHHhcCcchhHH
Q 002587 826 QKCIECVPEDAIQFIVLTFYD-QVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQ------S-VCMLAQDQYGNYV 897 (904)
Q Consensus 826 QK~LE~~p~e~r~~II~~Llg-qlveLSthKYGSrVVQK~Le~~~d~~~kk~II~EIl~------n-l~~LaqDqYGNYV 897 (904)
|++|+.+-+..++.|+..+.. ++++||+||||+.||||||..|.+...+++|+.++.. . +..|+.|+|||||
T Consensus 638 q~il~~g~~~~k~~i~~~~l~~~v~elS~~kfaSnvVeK~i~~~~~~~~~~ril~~~~~~~~~~~~~l~~i~~d~y~Nyv 717 (777)
T COG5099 638 QHILDNGAEPNKERIIIKLLSKRVVELSTHKFASNVVEKCIKYASDSFKRSRILNELTNRGIEKPGFLMLILDDQYANYV 717 (777)
T ss_pred hHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhcccccCChHHHHHHHhhhcchH
Confidence 999999999999999999888 9999999999999999999999987767899999987 1 7889999999999
Q ss_pred HHHhcC
Q 002587 898 VQVCFG 903 (904)
Q Consensus 898 VQ~ILE 903 (904)
+|++++
T Consensus 718 ~q~~~~ 723 (777)
T COG5099 718 IQYLLD 723 (777)
T ss_pred HHHHHh
Confidence 999874
No 8
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-33 Score=316.33 Aligned_cols=231 Identities=23% Similarity=0.372 Sum_probs=209.1
Q ss_pred CCCCCCchhhhHHHHHhhc--C-cccccHHHHHH---HHHHHHhhCcccCHHHHHHhhcCC-HHHHHHHHHHHHHhHHHh
Q 002587 671 AGGSLDESFASSLLDEFKS--N-KTKCFELSEIA---GHVVEFSADQYGSRFIQQKLETAT-TEEKNMVFQEIMPQALSL 743 (904)
Q Consensus 671 ~~~~m~D~fgS~lLEef~s--n-k~r~~~LeeI~---G~IveLA~Dq~GSRvLQKlLE~as-~Eer~~IfeEIlp~i~~L 743 (904)
...+|.|+||++++|++.+ . +++..+...|. +.++++|++.+|+|.||++++... .++...|+..|.+.++.|
T Consensus 255 ~~~Lm~d~fGny~vqkl~~~~~~eq~~~i~~~lts~p~~fv~i~~N~~GTr~iQkl~~~~~~~dqI~~~~~ai~~~fl~L 334 (536)
T KOG2049|consen 255 VPELMEDPFGNYLVQKLLEVCDEEQLTKIVSLLTSDPRLFVEICTNMYGTRAVQKLLGKSDSVDQISLFLDAIKPNFLHL 334 (536)
T ss_pred HHHHHhccchhHHHHHHHHhhCHHHHHHHHHHHhcCccceeEeeecCchhHHHHHHHhccccHHHHHHHHHHHHhhhHHh
Confidence 3456899999999998764 2 33333344443 359999999999999999999966 567788999999999999
Q ss_pred hcccccchHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhcccccHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhCCCchH
Q 002587 744 MTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNH 823 (904)
Q Consensus 744 m~D~fGNyVVQKLfE~~s~eqr~~Li~~L~g~IveLS~hkyGSrVVQKLLE~~~~eqk~~LVeeL~~~~l~La~DqnGNh 823 (904)
++|.||+||||+||...++++++.|++.+..++.++|+|++||.|||++|.....+++..+++++..+.+.|+.|.||||
T Consensus 335 ~~D~~g~~Viq~cl~~f~~~~~~~l~e~i~~~c~~iA~~~hGCcvLq~cl~~~~~~~rd~Lv~~i~~naL~Ls~d~~GNy 414 (536)
T KOG2049|consen 335 IKDKNGNHVIQRCLRVFSKEKNEFLYEAILRYCLDLATDQHGCCVLQKCLDYSRGEQRDRLVEEISRNALLLSNDPYGNY 414 (536)
T ss_pred hhhcchhHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHhccccchhHHHhcchhHHHHHHHHHHHHHHhHhhhcCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhcCcHHHHHHHHHHHHH--HHHHHhcCcchhHHHHHh
Q 002587 824 VIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQ--SVCMLAQDQYGNYVVQVC 901 (904)
Q Consensus 824 VIQK~LE~~p~e~r~~II~~LlgqlveLSthKYGSrVVQK~Le~~~d~~~kk~II~EIl~--nl~~LaqDqYGNYVVQ~I 901 (904)
|||++|+.-.+.....|+..|.+++++|+++||||+||||||+++... +..|+.|++. .+..|+.|+|||||||+.
T Consensus 415 vVQyvl~L~~~~~t~~i~~~L~g~~veLS~qKfgS~vVEk~L~~~~~~--~~~iV~ell~~~~~~~Ll~D~ygNyViq~A 492 (536)
T KOG2049|consen 415 VVQYVLELNDPSCTVNIAEKLRGHYVELSFQKFGSHVVEKLLKVRESS--RAQIVLELLSCDELDRLLRDPYGNYVIQTA 492 (536)
T ss_pred hhhhhhhhcCcchHHHHHHhhhhHHHHHHHHhhccHHHHHHHhcCcch--hhHHHHHHHccccHHHHhhCccchHHHHHH
Confidence 999999998888899999999999999999999999999999998643 3678999998 899999999999999998
Q ss_pred cC
Q 002587 902 FG 903 (904)
Q Consensus 902 LE 903 (904)
|.
T Consensus 493 L~ 494 (536)
T KOG2049|consen 493 LR 494 (536)
T ss_pred HH
Confidence 74
No 9
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=1.5e-32 Score=313.71 Aligned_cols=207 Identities=29% Similarity=0.532 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHHhhCcccCHHHHHHhhcCCHHHHHHHHHHHHHhHHHhhcccccchHHHHHHhhCCHHHHHHHHHHHHH-
Q 002587 696 ELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTG- 774 (904)
Q Consensus 696 ~LeeI~G~IveLA~Dq~GSRvLQKlLE~as~Eer~~IfeEIlp~i~~Lm~D~fGNyVVQKLfE~~s~eqr~~Li~~L~g- 774 (904)
.+.++.+.+..+|+|++||+++|+.++.++......||.+++.++.+||+|+||||+|||+++.|+++++..|+..+..
T Consensus 211 ~~~~~~~~~~~~akd~~gc~~lq~~~~~~~~~~~~~if~~~~~~~~~Lm~d~fGny~vqkl~~~~~~eq~~~i~~~lts~ 290 (536)
T KOG2049|consen 211 SMVEIQGSINLIAKDQHGCRLLQKLLSEGTKVSILKIFLETIQDVPELMEDPFGNYLVQKLLEVCDEEQLTKIVSLLTSD 290 (536)
T ss_pred hhhccchhhhhhcccccCCcccccCcccCccccHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhCHHHHHHHHHHHhcC
Confidence 3556778999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred --HHHHHhhcccccHHHHhhhhhcchHHHHH-HHHHHHHHHHHHhhCCCchHHHHHhhhcCChhHHHHHHHHHHHHHHHH
Q 002587 775 --HVLTLSLQMYGCRVIQKAIEVVELDQQTQ-MVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTL 851 (904)
Q Consensus 775 --~IveLS~hkyGSrVVQKLLE~~~~eqk~~-LVeeL~~~~l~La~DqnGNhVIQK~LE~~p~e~r~~II~~LlgqlveL 851 (904)
.++.+|.++||+++||++++..+..+++. +++.|+..+..|++|.||+||||+||.+.+++.+++|++.+.++|.++
T Consensus 291 p~~fv~i~~N~~GTr~iQkl~~~~~~~dqI~~~~~ai~~~fl~L~~D~~g~~Viq~cl~~f~~~~~~~l~e~i~~~c~~i 370 (536)
T KOG2049|consen 291 PRLFVEICTNMYGTRAVQKLLGKSDSVDQISLFLDAIKPNFLHLIKDKNGNHVIQRCLRVFSKEKNEFLYEAILRYCLDL 370 (536)
T ss_pred ccceeEeeecCchhHHHHHHHhccccHHHHHHHHHHHHhhhHHhhhhcchhHHHHHHHHhcCchhhhHHHHHHHHHHHHH
Confidence 69999999999999999999997666554 567899999999999999999999999999999999999999999999
Q ss_pred hcCcchhHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhcCcchhHHHHHhcC
Q 002587 852 STHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQVCFG 903 (904)
Q Consensus 852 SthKYGSrVVQK~Le~~~d~~~kk~II~EIl~nl~~LaqDqYGNYVVQ~ILE 903 (904)
|+|++||+|+|+||....+ ..++.+++||..+...|++|+||||||||+|+
T Consensus 371 A~~~hGCcvLq~cl~~~~~-~~rd~Lv~~i~~naL~Ls~d~~GNyvVQyvl~ 421 (536)
T KOG2049|consen 371 ATDQHGCCVLQKCLDYSRG-EQRDRLVEEISRNALLLSNDPYGNYVVQYVLE 421 (536)
T ss_pred HHhccccchhHHHhcchhH-HHHHHHHHHHHHHhHhhhcCccccchhhhhhh
Confidence 9999999999999999875 56799999999999999999999999999986
No 10
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=6.1e-23 Score=232.61 Aligned_cols=209 Identities=21% Similarity=0.388 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHhhCcccCHHHHHHhhcCCHHHHHHHHHHHHHhHHHhhcccccchHHHHHHhhCCHHHHHHHHHHHHHH
Q 002587 696 ELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGH 775 (904)
Q Consensus 696 ~LeeI~G~IveLA~Dq~GSRvLQKlLE~as~Eer~~IfeEIlp~i~~Lm~D~fGNyVVQKLfE~~s~eqr~~Li~~L~g~ 775 (904)
++.-|+++|.+++.-+..|||||.++++++.++|+.||+||.|.+++||+++||-|+|||+|.++++.++..||+.|.||
T Consensus 158 l~~likg~i~~lv~aHDtSRViQt~Vky~s~~~r~~if~eL~p~~v~l~kskY~k~~v~KmLkyGsk~q~a~iI~sl~Gh 237 (652)
T KOG2050|consen 158 LYKLIKGKISKLVFAHDTSRVIQTCVKYGSEAQREQIFEELLPFFVELAKSKYAKFFVQKMLKYGSKAQKAKIINSLRGH 237 (652)
T ss_pred HHHHHhhhHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccHHHHhhhh-------------------------------------------------------------
Q 002587 776 VLTLSLQMYGCRVIQKAIE------------------------------------------------------------- 794 (904)
Q Consensus 776 IveLS~hkyGSrVVQKLLE------------------------------------------------------------- 794 (904)
++.|..|..|+.||..++.
T Consensus 238 v~kLlRH~eaa~Vve~ay~~~A~l~Qr~~li~EfYG~efqlfK~sn~~Tl~kil~~~pekk~~I~~~l~~~I~~v~eKg~ 317 (652)
T KOG2050|consen 238 VVKLLRHREAAYVVEYAYNDFATLEQRQYLIQEFYGDEFQLFKDSNDKTLDKILAEAPEKKASILRHLKAIITPVAEKGS 317 (652)
T ss_pred HHHHHhhhHHHHHHHHHHHhhccHHHHHHHHHHHhhHHHHHHhccCcccHHHHHHhChHhHHHHHHHHHHHhHHHhhcch
Confidence 9999999999999984432
Q ss_pred ---------------hcchHHHHHHHHHHHHHHHHHhhCCCchHHHHHhhhcCChhHHHHHHHHHHHHHHHHhcCcchhH
Q 002587 795 ---------------VVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCR 859 (904)
Q Consensus 795 ---------------~~~~eqk~~LVeeL~~~~l~La~DqnGNhVIQK~LE~~p~e~r~~II~~LlgqlveLSthKYGSr 859 (904)
.++++.+.++++.|.+.+.+|+..+.|+.|..+||.+.+++.|+.||+.|.+++..++.|.||+.
T Consensus 318 v~~tivHk~mlEy~~~ade~e~~e~l~ll~elv~e~vHT~dGS~vAm~li~~a~aKeRK~IiK~~K~h~~K~A~~~yGh~ 397 (652)
T KOG2050|consen 318 VDHTIVHKLMLEYLTIADEEEKSELLELLKELVPEMVHTRDGSRVAMKLIWHATAKERKLIIKNMKEHVEKIANDEYGHL 397 (652)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhccCce
Confidence 24455566666666777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcHHH-HHHHHHHHHHHHHHHhcCcchhHHHHHhcCC
Q 002587 860 VIQRVLEHCHDEKT-QSIMMDEILQSVCMLAQDQYGNYVVQVCFGP 904 (904)
Q Consensus 860 VVQK~Le~~~d~~~-kk~II~EIl~nl~~LaqDqYGNYVVQ~ILEP 904 (904)
|+-++|+..+|... ++.|+.++...+..|+.|+||+.|++++|.|
T Consensus 398 vlia~ldc~DDT~l~kk~i~~e~~~el~~li~Dk~Grrv~lyll~p 443 (652)
T KOG2050|consen 398 VLIALLDCTDDTKLLKKLIYDELKSELKSLISDKYGRRVILYLLAP 443 (652)
T ss_pred ehhhhhcccchHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhccC
Confidence 99999998877544 6789999999999999999999999999987
No 11
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=6.2e-17 Score=185.80 Aligned_cols=195 Identities=18% Similarity=0.295 Sum_probs=151.8
Q ss_pred HHHhhCcccCHHHHHHhhcCCHHHHHHHHHHHHHhHHHhhcccccchHHHHHHhhCC-HHHHHHHHHHHHHHHHHHhh--
Q 002587 705 VEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGT-ASQVRELADQLTGHVLTLSL-- 781 (904)
Q Consensus 705 veLA~Dq~GSRvLQKlLE~as~Eer~~IfeEIlp~i~~Lm~D~fGNyVVQKLfE~~s-~eqr~~Li~~L~g~IveLS~-- 781 (904)
.++-.|+.|||++..+++.+....+..+....+..+.+|+.++++||+||++|++.. .++...|+++|.+++-.|..
T Consensus 339 k~~l~d~tgSrllE~Imeva~~~~~~lf~~~f~~rl~~La~~p~aNF~lQrli~h~~~~e~v~~v~eeL~P~~~~LL~~g 418 (650)
T KOG2188|consen 339 KELLSDQTGSRLLEVIMEVASESLLSLFYIVFCGRLDELAVHPIANFPLQRLINHLTSLEDVGSVIEELAPKLSSLLEQG 418 (650)
T ss_pred HHHHhcCcccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhCccccchHHHHHHhccCHHHHHHHHHHHhHHHHHHHHcC
Confidence 344457888888888888888777766666777778888888888888888888876 77777777777765444321
Q ss_pred ---------------------------------------------------------------cccccHHHHhhhhhcch
Q 002587 782 ---------------------------------------------------------------QMYGCRVIQKAIEVVEL 798 (904)
Q Consensus 782 ---------------------------------------------------------------hkyGSrVVQKLLE~~~~ 798 (904)
|..||-++|.++.+.+.
T Consensus 419 ~~gVv~sLia~~~rl~s~q~~~l~~Li~a~~~~~~~~k~il~~lL~~~~~~g~~~~~~~t~~~h~~ga~lle~lv~f~k~ 498 (650)
T KOG2188|consen 419 NSGVVASLIAASARLGSYQDKMLQQLIQAFHAASESKKNILPCLLFSLTLFGCVGEWFLTEKFHQKGAVLLEELVNFSKT 498 (650)
T ss_pred CchHhHHHHHHHHhhchhHHHHHHHHHHHHhcCChhhcchHHHHHHHhhhcccccccccHHHHhhchhHHHHHHHhhchh
Confidence 22344445555554433
Q ss_pred HHH---HHHHHHHHHHHHHHhhCCCchHHHHHhhhc--CChhHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhcCcHHH
Q 002587 799 DQQ---TQMVKELDGHIMRCVRDQNGNHVIQKCIEC--VPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKT 873 (904)
Q Consensus 799 eqk---~~LVeeL~~~~l~La~DqnGNhVIQK~LE~--~p~e~r~~II~~LlgqlveLSthKYGSrVVQK~Le~~~d~~~ 873 (904)
..+ +.|.+-...++.+++++.+|+|||+.+|.. .+++.++.||..|.+.+++|+++.|||||++|||+.|. ..+
T Consensus 499 ~i~~litsll~L~~eqi~e~~~~~~~ShlIeavL~S~~l~~~~~~kLi~~l~g~~~~La~~~~GSrv~eK~wea~~-~~~ 577 (650)
T KOG2188|consen 499 HIQTLITSLLSLSEEQILEMSCNGVGSHLIEAVLASKDLGEKIKEKLINILDGSFVTLALSTFGSRVFEKCWEATD-VLY 577 (650)
T ss_pred hhHHHHHHHHhhhHHHHHHHhcCCchHHHHHHHHHhccccHHHHHHHHHHhhccchheeecCcccHHHHHHHHHhh-HHH
Confidence 111 112222357899999999999999999987 78999999999999999999999999999999999996 667
Q ss_pred HHHHHHHHHHHHHHHhcCcchhHHHHH
Q 002587 874 QSIMMDEILQSVCMLAQDQYGNYVVQV 900 (904)
Q Consensus 874 kk~II~EIl~nl~~LaqDqYGNYVVQ~ 900 (904)
|.+|++||+.--..|..++||.||..+
T Consensus 578 k~rIakeL~~~~~~vk~s~~gk~v~~~ 604 (650)
T KOG2188|consen 578 KERIAKELVGIHNDVKSSKYGKFVMLN 604 (650)
T ss_pred HHHHHHHHHhhccccccCcchHHHHHh
Confidence 899999999999999999999999865
No 12
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=6.1e-15 Score=168.31 Aligned_cols=188 Identities=20% Similarity=0.335 Sum_probs=166.6
Q ss_pred hhHHHHH---hhcCcccccHHHHHHHHHHHHhhCcccCHHHHHHhhcCCHHHHHHHHHHHHHhHHHhhcccccchHHHHH
Q 002587 680 ASSLLDE---FKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKF 756 (904)
Q Consensus 680 gS~lLEe---f~snk~r~~~LeeI~G~IveLA~Dq~GSRvLQKlLE~as~Eer~~IfeEIlp~i~~Lm~D~fGNyVVQKL 756 (904)
.+|++|. |.+...|..+.+++.+.+++||++.||-+++||+|.++++.+++.|+.++.+|++.|+.|..|.|||.-+
T Consensus 175 tSRViQt~Vky~s~~~r~~if~eL~p~~v~l~kskY~k~~v~KmLkyGsk~q~a~iI~sl~Ghv~kLlRH~eaa~Vve~a 254 (652)
T KOG2050|consen 175 TSRVIQTCVKYGSEAQREQIFEELLPFFVELAKSKYAKFFVQKMLKYGSKAQKAKIINSLRGHVVKLLRHREAAYVVEYA 254 (652)
T ss_pred hHHHHHHHHHhcCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHH
Confidence 4788884 4566778889999999999999999999999999999999999999999999999999999999999977
Q ss_pred Hhh-CCHHHHHHHHHHHHH-------------------------------------------------------------
Q 002587 757 FEH-GTASQVRELADQLTG------------------------------------------------------------- 774 (904)
Q Consensus 757 fE~-~s~eqr~~Li~~L~g------------------------------------------------------------- 774 (904)
+.- .+.+||..|+.+|.+
T Consensus 255 y~~~A~l~Qr~~li~EfYG~efqlfK~sn~~Tl~kil~~~pekk~~I~~~l~~~I~~v~eKg~v~~tivHk~mlEy~~~a 334 (652)
T KOG2050|consen 255 YNDFATLEQRQYLIQEFYGDEFQLFKDSNDKTLDKILAEAPEKKASILRHLKAIITPVAEKGSVDHTIVHKLMLEYLTIA 334 (652)
T ss_pred HHhhccHHHHHHHHHHHhhHHHHHHhccCcccHHHHHHhChHhHHHHHHHHHHHhHHHhhcchhHHHHHHHHHHHHHHhC
Confidence 754 567777666665543
Q ss_pred --------------HHHHHhhcccccHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhCCCchHHHHHhhhcCChh--HHH
Q 002587 775 --------------HVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPED--AIQ 838 (904)
Q Consensus 775 --------------~IveLS~hkyGSrVVQKLLE~~~~eqk~~LVeeL~~~~l~La~DqnGNhVIQK~LE~~p~e--~r~ 838 (904)
.++++...+-|++|-.++|.+.+.+++..|++.|.+++..++.|+||+.|+-.+|+|.++. ..+
T Consensus 335 de~e~~e~l~ll~elv~e~vHT~dGS~vAm~li~~a~aKeRK~IiK~~K~h~~K~A~~~yGh~vlia~ldc~DDT~l~kk 414 (652)
T KOG2050|consen 335 DEEEKSELLELLKELVPEMVHTRDGSRVAMKLIWHATAKERKLIIKNMKEHVEKIANDEYGHLVLIALLDCTDDTKLLKK 414 (652)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhccCceehhhhhcccchHHHHHH
Confidence 3444555679999999999999999999999999999999999999999999999998765 456
Q ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHhh
Q 002587 839 FIVLTFYDQVVTLSTHPYGCRVIQRVLEH 867 (904)
Q Consensus 839 ~II~~LlgqlveLSthKYGSrVVQK~Le~ 867 (904)
.|++.+.+.+..|..++||-+|++.++.-
T Consensus 415 ~i~~e~~~el~~li~Dk~Grrv~lyll~p 443 (652)
T KOG2050|consen 415 LIYDELKSELKSLISDKYGRRVILYLLAP 443 (652)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhhccC
Confidence 78899999999999999999999999876
No 13
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=2.7e-13 Score=156.34 Aligned_cols=101 Identities=20% Similarity=0.352 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhhCcccCHHHHHHhhcCCHHHHHHHHHHHHHhHHHhhcccccchHHHHHHhhCCH-------------
Q 002587 696 ELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTA------------- 762 (904)
Q Consensus 696 ~LeeI~G~IveLA~Dq~GSRvLQKlLE~as~Eer~~IfeEIlp~i~~Lm~D~fGNyVVQKLfE~~s~------------- 762 (904)
++++..|+.+++++++.||+++|+++..++..+...+|.++-.++..+++|+||+||+|++|++...
T Consensus 93 i~ee~~grel~l~tnqi~Sk~le~l~~f~d~~ql~~ff~~~~g~lr~i~~~r~gshVle~~L~~~a~~vg~e~~~~s~de 172 (650)
T KOG2188|consen 93 IFEEVYGRELDLATNQIGSKVLEDLLGFSDSRQLCDFFSALNGVLRSIAQHRFGSHVLESALEKLAALVGQEAALLSEDE 172 (650)
T ss_pred HHHHhccceeehhccchhHHHHHHHhccCCchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhCccccccchhh
Confidence 6778889999999999999999999999999999999999999999999999999999999986311
Q ss_pred -------------HHHHHHHHHHHHHHH-HHhhcccccHHHHhhhhhc
Q 002587 763 -------------SQVRELADQLTGHVL-TLSLQMYGCRVIQKAIEVV 796 (904)
Q Consensus 763 -------------eqr~~Li~~L~g~Iv-eLS~hkyGSrVVQKLLE~~ 796 (904)
+....+++++.+++. .|+.|.||++|+.++|-++
T Consensus 173 a~~~ke~p~~t~e~~~~~m~nei~~~~~~~l~~~~~gshv~rt~~l~l 220 (650)
T KOG2188|consen 173 AAVEKEGPFVTCENLLLLMLNEISPHVLKTLMELIFGSHVLRTILLLL 220 (650)
T ss_pred hcccccCcccccchHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 123457888888888 8999999999999887654
No 14
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=99.32 E-value=2.8e-12 Score=150.61 Aligned_cols=206 Identities=16% Similarity=0.276 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHhhCcccCHHHHHHhhcCCHH-HHHHHHHHHHHhHHHhhcccccchHHHHHHhhCCHHHHHHHHHHHHHH
Q 002587 697 LSEIAGHVVEFSADQYGSRFIQQKLETATTE-EKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGH 775 (904)
Q Consensus 697 LeeI~G~IveLA~Dq~GSRvLQKlLE~as~E-er~~IfeEIlp~i~~Lm~D~fGNyVVQKLfE~~s~eqr~~Li~~L~g~ 775 (904)
++.....+..+..+++|.+..||.++.+..| +...|+.-+.+....|..|+|||||+|.+|+.+-+. ..+|++.+..|
T Consensus 577 l~r~s~ylts~gvHknGtw~~qk~ik~a~te~qik~iv~g~dpyc~~l~~dqfgnyvaqd~LkF~fp~-nsFVfE~v~s~ 655 (1007)
T KOG4574|consen 577 LRRGSKYLTSMGVHKNGTWACQKIIKMAFTERQIKLIVRGVDPYCTPLLNDQFGNYVAQDSLKFGFPW-NSFVFESVFSH 655 (1007)
T ss_pred HhhhhhhhhhccccccchHHHHHHHHHhhchhhhheeeeccCcchhhHHHHhhcceeeeeehhccCcc-chHHHHHHHHH
Confidence 3333334444444444444444444444322 333444444444444444555555554444443221 22334455555
Q ss_pred HHHHhhcccccHHHHhhhhhcc--hHHHHHHHHH-HHHHHHHHhhCCCchHHHHHhhhcCChhHHH-HHHHHHHHHHHHH
Q 002587 776 VLTLSLQMYGCRVIQKAIEVVE--LDQQTQMVKE-LDGHIMRCVRDQNGNHVIQKCIECVPEDAIQ-FIVLTFYDQVVTL 851 (904)
Q Consensus 776 IveLS~hkyGSrVVQKLLE~~~--~eqk~~LVee-L~~~~l~La~DqnGNhVIQK~LE~~p~e~r~-~II~~LlgqlveL 851 (904)
++++....||+|.|.+|||... .+++...++. +...+..++++-+|-..|.+.|+......+. .++..+.+++++|
T Consensus 656 ~~~ivQsrfGsravrAcle~lNa~~e~qsl~~~s~iIs~ss~latnsng~llvtw~lDns~~~nrh~~l~~~lt~el~~l 735 (1007)
T KOG4574|consen 656 FWDIVQSRFGSRAVRACLEALNANTEDQSLVRESCIISKSSYLATNSNGLLLVTWLLDNSSLPNRHTILAHGLTKELVML 735 (1007)
T ss_pred HHHHHHHhhhhHHHHHHHHHhccCchhhhhhhhhhhhhchhhhhhcCccceeeeeecccccccchhhHHhhhhhhccchh
Confidence 5555555555555555555432 2222222221 1122344455555555555555443222222 2344466899999
Q ss_pred hcCcchhHHHHHHHhhcCcHHHHHHHHHHHHHH------------------------------HHHHhcCcchhHHHHHh
Q 002587 852 STHPYGCRVIQRVLEHCHDEKTQSIMMDEILQS------------------------------VCMLAQDQYGNYVVQVC 901 (904)
Q Consensus 852 SthKYGSrVVQK~Le~~~d~~~kk~II~EIl~n------------------------------l~~LaqDqYGNYVVQ~I 901 (904)
|+|+-|+-+|+|+++.|.++.-+++|++.|+.. +..+..|||++||.|-|
T Consensus 736 C~h~Lgsttv~Kl~n~~qepvs~ekii~hlf~~~n~kd~~lt~Vl~~~~~gpmfiikvi~~p~iel~f~dQf~kvvrq~i 815 (1007)
T KOG4574|consen 736 CFHKLGSTTVLKLLNLRQEPVSREKIIEHLFHLRNFKDSALTEVLTEANYGPMFIIKVITKPTIELAFRDQFIKVVRQVI 815 (1007)
T ss_pred hhhhccchhhhhhhhcCCChHHHHHHHHHHhhccccccchhhhhhhhhccccceeeeeeccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999988788888888731 23467789999999988
Q ss_pred cC
Q 002587 902 FG 903 (904)
Q Consensus 902 LE 903 (904)
|.
T Consensus 816 l~ 817 (1007)
T KOG4574|consen 816 LN 817 (1007)
T ss_pred Hh
Confidence 64
No 15
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=99.22 E-value=8.7e-12 Score=146.60 Aligned_cols=177 Identities=19% Similarity=0.274 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHhHHHhhcccccchHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhcccccHHHHhhhhhcchHHHHH-H
Q 002587 726 TEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQ-M 804 (904)
Q Consensus 726 ~Eer~~IfeEIlp~i~~Lm~D~fGNyVVQKLfE~~s~eqr~~Li~~L~g~IveLS~hkyGSrVVQKLLE~~~~eqk~~-L 804 (904)
..|.+.+..+++.+..+|.-|=.||-|+||+||++....+..+.......+..+..|+||+++.||+|+.+..+.+.. +
T Consensus 534 ~pEied~ai~mLDe~~elsSdylGNtVvqkfFe~sS~~ik~aml~r~s~ylts~gvHknGtw~~qk~ik~a~te~qik~i 613 (1007)
T KOG4574|consen 534 APEIEDLAILMLDELPELSSDYLGNTVVQKFFELSSDIIKDAMLRRGSKYLTSMGVHKNGTWACQKIIKMAFTERQIKLI 613 (1007)
T ss_pred chhHHHHHHHHhccCCcchhhhhcchhhHHHHhhccHHHHHHHHhhhhhhhhhccccccchHHHHHHHHHhhchhhhhee
Confidence 345566666677777777777788888888888888888888888777788888888888888888888876555444 4
Q ss_pred HHHHHHHHHHHhhCCCchHHHHHhhhcCChhHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhcCc--------------
Q 002587 805 VKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHD-------------- 870 (904)
Q Consensus 805 VeeL~~~~l~La~DqnGNhVIQK~LE~~p~e~r~~II~~LlgqlveLSthKYGSrVVQK~Le~~~d-------------- 870 (904)
+.-.++....++.|++||||+|.||...-+ ...+|++.+..+++++.+.+||++-|.+||+.-.-
T Consensus 614 v~g~dpyc~~l~~dqfgnyvaqd~LkF~fp-~nsFVfE~v~s~~~~ivQsrfGsravrAcle~lNa~~e~qsl~~~s~iI 692 (1007)
T KOG4574|consen 614 VRGVDPYCTPLLNDQFGNYVAQDSLKFGFP-WNSFVFESVFSHFWDIVQSRFGSRAVRACLEALNANTEDQSLVRESCII 692 (1007)
T ss_pred eeccCcchhhHHHHhhcceeeeeehhccCc-cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhccCchhhhhhhhhhhh
Confidence 455677777888888888888888877544 45677788888888888888888888888875321
Q ss_pred -------------------------HHHHHHHHHHHHHHHHHHhcCcchhHHHHHhcC
Q 002587 871 -------------------------EKTQSIMMDEILQSVCMLAQDQYGNYVVQVCFG 903 (904)
Q Consensus 871 -------------------------~~~kk~II~EIl~nl~~LaqDqYGNYVVQ~ILE 903 (904)
..+...++..+.+.+++||.|+-|+-+|+|+|+
T Consensus 693 s~ss~latnsng~llvtw~lDns~~~nrh~~l~~~lt~el~~lC~h~Lgsttv~Kl~n 750 (1007)
T KOG4574|consen 693 SKSSYLATNSNGLLLVTWLLDNSSLPNRHTILAHGLTKELVMLCFHKLGSTTVLKLLN 750 (1007)
T ss_pred hchhhhhhcCccceeeeeecccccccchhhHHhhhhhhccchhhhhhccchhhhhhhh
Confidence 111112333344567899999999999999985
No 16
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains. The FBF-2 protein of Caenorhabditis elegans also has a Puf domain. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs [, ]. The same type of repetitive domain has been found in in a number of other proteins from all eukaryotic kingdoms. The Puf proteins characterised to date have been reported to bind to 3'-untranslated region (UTR) sequences encompassing a so-called UGUR tetranucleotide motif and thereby to repress gene expression by affecting mRNA translation or stability. In Saccharomyces cerevisiae (Baker's yeast), five proteins, termed Puf1p to Puf5p, bear six to eight Puf repeats []. Puf3p binds nearly exclusively to cytoplasmic mRNAs that encode mitochondrial proteins; Puf1p and Puf2p interact preferentially with mRNAs encoding membrane-associated proteins; Puf4p preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; and Puf5p is associated with mRNAs encoding chromatin modifiers and components of the spindle pole body. This suggests the existence of an extensive network of RNA-protein interactions that coordinate the post-transcriptional fate of large sets of cytotopically and functionally related RNAs through each stage of its lifecycle.; GO: 0003723 RNA binding; PDB: 3BX2_A 4DZS_B 3BX3_B 3BWT_A 3GVT_B 3GVO_A 1IB2_A 3Q0N_A 2YJY_A 1M8Z_A ....
Probab=98.09 E-value=1.7e-06 Score=65.69 Aligned_cols=34 Identities=35% Similarity=0.573 Sum_probs=24.5
Q ss_pred HHHhHHHhhcccccchHHHHHHhhCCHHHHHHHH
Q 002587 736 IMPQALSLMTDVFGNYVIQKFFEHGTASQVRELA 769 (904)
Q Consensus 736 Ilp~i~~Lm~D~fGNyVVQKLfE~~s~eqr~~Li 769 (904)
|.+++..|+.|+||||||||+|++++++++..|+
T Consensus 2 i~~~~~~l~~d~~Gn~VvQk~le~~~~~~~~~il 35 (35)
T PF00806_consen 2 IKGNLVELSKDQYGNYVVQKCLEHASPEQRQLIL 35 (35)
T ss_dssp HTTTHHHHHTSTTHHHHHHHHHHHSSHHHHHHHH
T ss_pred hHHHHHHHHhccccCHHHHHHHHHCCHHHHHhhC
Confidence 5567777777777777777777777777766653
No 17
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains. The FBF-2 protein of Caenorhabditis elegans also has a Puf domain. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs [, ]. The same type of repetitive domain has been found in in a number of other proteins from all eukaryotic kingdoms. The Puf proteins characterised to date have been reported to bind to 3'-untranslated region (UTR) sequences encompassing a so-called UGUR tetranucleotide motif and thereby to repress gene expression by affecting mRNA translation or stability. In Saccharomyces cerevisiae (Baker's yeast), five proteins, termed Puf1p to Puf5p, bear six to eight Puf repeats []. Puf3p binds nearly exclusively to cytoplasmic mRNAs that encode mitochondrial proteins; Puf1p and Puf2p interact preferentially with mRNAs encoding membrane-associated proteins; Puf4p preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; and Puf5p is associated with mRNAs encoding chromatin modifiers and components of the spindle pole body. This suggests the existence of an extensive network of RNA-protein interactions that coordinate the post-transcriptional fate of large sets of cytotopically and functionally related RNAs through each stage of its lifecycle.; GO: 0003723 RNA binding; PDB: 3BX2_A 4DZS_B 3BX3_B 3BWT_A 3GVT_B 3GVO_A 1IB2_A 3Q0N_A 2YJY_A 1M8Z_A ....
Probab=97.82 E-value=8.5e-06 Score=61.84 Aligned_cols=26 Identities=38% Similarity=0.593 Sum_probs=16.0
Q ss_pred HHHHHHHhcCcchhHHHHHHHhhcCc
Q 002587 845 YDQVVTLSTHPYGCRVIQRVLEHCHD 870 (904)
Q Consensus 845 lgqlveLSthKYGSrVVQK~Le~~~d 870 (904)
.+++++|++|+|||+||||||+.+..
T Consensus 3 ~~~~~~l~~d~~Gn~VvQk~le~~~~ 28 (35)
T PF00806_consen 3 KGNLVELSKDQYGNYVVQKCLEHASP 28 (35)
T ss_dssp TTTHHHHHTSTTHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhccccCHHHHHHHHHCCH
Confidence 45566666666666666666666543
No 18
>smart00025 Pumilio Pumilio-like repeats. Pumilio-like repeats that bind RNA.
Probab=97.67 E-value=2.6e-05 Score=57.83 Aligned_cols=32 Identities=38% Similarity=0.590 Sum_probs=17.4
Q ss_pred HHhHHHhhcccccchHHHHHHhhCCHHHHHHH
Q 002587 737 MPQALSLMTDVFGNYVIQKFFEHGTASQVREL 768 (904)
Q Consensus 737 lp~i~~Lm~D~fGNyVVQKLfE~~s~eqr~~L 768 (904)
.+++.+||+|+|||||||++|+.++++++..|
T Consensus 3 ~~~~~~l~~~~~g~~viqk~l~~~~~~~~~~i 34 (36)
T smart00025 3 KGHLLELSKDQYGNRVVQKLLEHASESQREQI 34 (36)
T ss_pred hHHHHHHHhcchhhHHHHHHHHHCCHHHHHHh
Confidence 34555555555555555555555555544444
No 19
>smart00025 Pumilio Pumilio-like repeats. Pumilio-like repeats that bind RNA.
Probab=97.41 E-value=0.00012 Score=54.27 Aligned_cols=34 Identities=41% Similarity=0.780 Sum_probs=31.4
Q ss_pred HHHHHHHHhhCcccCHHHHHHhhcCCHHHHHHHH
Q 002587 700 IAGHVVEFSADQYGSRFIQQKLETATTEEKNMVF 733 (904)
Q Consensus 700 I~G~IveLA~Dq~GSRvLQKlLE~as~Eer~~If 733 (904)
+.+++.+|++|++||++||++|+.++.+++..|+
T Consensus 2 ~~~~~~~l~~~~~g~~viqk~l~~~~~~~~~~i~ 35 (36)
T smart00025 2 IKGHLLELSKDQYGNRVVQKLLEHASESQREQII 35 (36)
T ss_pred chHHHHHHHhcchhhHHHHHHHHHCCHHHHHHhh
Confidence 5688999999999999999999999999888876
No 20
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=85.83 E-value=2 Score=43.41 Aligned_cols=64 Identities=13% Similarity=0.308 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHhhcCcHHH--HHHHHHHHHHH--------HHHHhcCcchhHHHHHhcC
Q 002587 840 IVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKT--QSIMMDEILQS--------VCMLAQDQYGNYVVQVCFG 903 (904)
Q Consensus 840 II~~LlgqlveLSthKYGSrVVQK~Le~~~d~~~--kk~II~EIl~n--------l~~LaqDqYGNYVVQ~ILE 903 (904)
|++.+..+..+|..++.||.||..+|..+..+.. .+.|++.+... -..++.+++|.+++.++|+
T Consensus 58 Ll~~i~~~~~~ll~~~~g~~~i~eiL~~~~gdk~~a~~Aia~~~~~~~~~~~~~~e~H~i~~p~~~r~lK~Liq 131 (148)
T PF08144_consen 58 LLEAIAENAEELLSSSFGCQFITEILLSATGDKSAALEAIASLAAEPLFPGDIDEEYHLIEHPFGHRMLKKLIQ 131 (148)
T ss_pred HHHHHHHhHHHHHhcCcccHHHHHHHhccCccHHHHHHHHHHHHhhccCCCCCcCccchhcCchHHHHHHHHHH
Confidence 4444555677888888888888888888764322 12333333332 2357888999999888764
No 21
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=84.59 E-value=2 Score=43.38 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=22.8
Q ss_pred HHHHHHHhHHHhhcccccchHHHHHHhhCCH
Q 002587 732 VFQEIMPQALSLMTDVFGNYVIQKFFEHGTA 762 (904)
Q Consensus 732 IfeEIlp~i~~Lm~D~fGNyVVQKLfE~~s~ 762 (904)
+++.|..++.+|+.+.+|+.||..++.++..
T Consensus 58 Ll~~i~~~~~~ll~~~~g~~~i~eiL~~~~g 88 (148)
T PF08144_consen 58 LLEAIAENAEELLSSSFGCQFITEILLSATG 88 (148)
T ss_pred HHHHHHHhHHHHHhcCcccHHHHHHHhccCc
Confidence 4555566677788888888888888887653
No 22
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=84.38 E-value=45 Score=37.02 Aligned_cols=40 Identities=10% Similarity=0.014 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcC--cchhHHHHHHHhhcCcHHH
Q 002587 834 EDAIQFIVLTFYDQVVTLSTH--PYGCRVIQRVLEHCHDEKT 873 (904)
Q Consensus 834 ~e~r~~II~~LlgqlveLSth--KYGSrVVQK~Le~~~d~~~ 873 (904)
++.++.|.+.+...+..+... -.=..+|+.-++.-++++.
T Consensus 289 ~~l~~~i~~~i~~~l~~~v~~~~~~i~~~V~~~l~~~~~~~l 330 (367)
T PF04286_consen 289 PELREKINRFIENLLERIVESNHIDIGEIVEEKLNSLDDEEL 330 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 444555555555555554444 2233444444444444433
No 23
>PF11510 FA_FANCE: Fanconi Anaemia group E protein FANCE; InterPro: IPR021025 Fanconi Anaemia (FA) is a cancer predisposition disorder characterised by chromosome fragility and hypersensitivity to genotoxic agents that suggest defects in the molecular mechanisms of DNA damage signalling and repair. In response to DNA damage, the FA core complex monoubiquitinates the FANCD2 protein. This ubiquitination targets FANCD2 to nuclear foci where it interacts with a variety of DNA repair proteins. The FA group E protein (FANCE) has an important role in DNA repair, functioning as the FANCD2-binding protein in the FA core complex []. This entry represents the C-terminal domain of FANCE, which consists predominantly of helices and does not contain any beta-strands. This domain folds in a continuous right-handed solenoidal pattern from its N terminus to its C terminus. ; PDB: 2ILR_A.
Probab=80.61 E-value=31 Score=38.34 Aligned_cols=137 Identities=16% Similarity=0.215 Sum_probs=69.3
Q ss_pred HHHHHhhcCCHHHHHHHHHHHH-Hh-----HHHhhcccccchHHHHHHhhCC----HHHHHHHHHHHHHHHHHHhhcccc
Q 002587 716 FIQQKLETATTEEKNMVFQEIM-PQ-----ALSLMTDVFGNYVIQKFFEHGT----ASQVRELADQLTGHVLTLSLQMYG 785 (904)
Q Consensus 716 vLQKlLE~as~Eer~~IfeEIl-p~-----i~~Lm~D~fGNyVVQKLfE~~s----~eqr~~Li~~L~g~IveLS~hkyG 785 (904)
..=++|-.|++.+.+.|++++. +. +..||. .++.... ..-...+-..+.++++.| ..-+
T Consensus 39 ~~lq~L~~csp~q~e~lc~~L~l~~lsd~~l~~lc~---------~ll~Ls~dls~~~a~~l~~sl~LpkilsL--~~~A 107 (263)
T PF11510_consen 39 SELQFLNECSPSQVEMLCSQLQLPQLSDDGLLQLCS---------SLLALSPDLSHSNATVLLRSLFLPKILSL--EEPA 107 (263)
T ss_dssp HHHHGGGG--HHHHHHHHHHHTGGG--HHHHHHHHH---------HHHH-SS---HHHHHHHHHHHHHHHHHH---SS--
T ss_pred HHHHHHHhCCHHHHHHHHHHhCcCCCCHHHHHHHHH---------HHHccCcccchhhHHHHHHHHHHHHHHhc--CCCc
Confidence 3445677789999999998765 22 222222 2222211 111222333445677666 6678
Q ss_pred cHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhCC-Cc---hHHHHHhh--hcCChhHHHHHHHHHHHHHHHHhcCcchhH
Q 002587 786 CRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQ-NG---NHVIQKCI--ECVPEDAIQFIVLTFYDQVVTLSTHPYGCR 859 (904)
Q Consensus 786 SrVVQKLLE~~~~eqk~~LVeeL~~~~l~La~Dq-nG---NhVIQK~L--E~~p~e~r~~II~~LlgqlveLSthKYGSr 859 (904)
+|++..++..+-...-..+++.+.--+ ++++ .| .-+|.+++ ++..++.+..++..+. ++.-+..-.-
T Consensus 108 SR~L~sal~~f~k~~p~~~~~all~Pl---L~~~~~g~~Q~eLl~rlvk~~~l~p~~~~l~l~~~L----~~~W~E~~~~ 180 (263)
T PF11510_consen 108 SRLLVSALTSFCKKYPRPVCEALLVPL---LQAPGLGPPQCELLCRLVKKECLEPDHRLLLLRQIL----ELVWNEETFL 180 (263)
T ss_dssp -HHHHHHHHHHHHHSHHHHHHHHHHHH---HHSTT--HHHHHHHHHHHH-TTS-HHHHHHHHHHHH----HS---HHHHH
T ss_pred cHHHHHHHHHHHHhCcHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhccCCHHHHHHHHHHHH----hCcCcHHHHH
Confidence 888887776655555555555543222 2332 23 23667777 5677777766665544 4445556688
Q ss_pred HHHHHHhhcCc
Q 002587 860 VIQRVLEHCHD 870 (904)
Q Consensus 860 VVQK~Le~~~d 870 (904)
|+|.+++...+
T Consensus 181 Vlq~lL~~k~~ 191 (263)
T PF11510_consen 181 VLQSLLERKVE 191 (263)
T ss_dssp HHHHHHTT---
T ss_pred HHHHHHhcCCC
Confidence 99999998754
No 24
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=80.18 E-value=59 Score=36.09 Aligned_cols=17 Identities=6% Similarity=-0.089 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002587 872 KTQSIMMDEILQSVCML 888 (904)
Q Consensus 872 ~~kk~II~EIl~nl~~L 888 (904)
..++.|.+.+...+..+
T Consensus 290 ~l~~~i~~~i~~~l~~~ 306 (367)
T PF04286_consen 290 ELREKINRFIENLLERI 306 (367)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 25
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=79.31 E-value=51 Score=37.52 Aligned_cols=26 Identities=8% Similarity=0.178 Sum_probs=15.2
Q ss_pred CchHHHHHhhhcCChhHHHHHHHHHH
Q 002587 820 NGNHVIQKCIECVPEDAIQFIVLTFY 845 (904)
Q Consensus 820 nGNhVIQK~LE~~p~e~r~~II~~Ll 845 (904)
.|-..+-.+|...+....+.|++.|.
T Consensus 202 ~g~~~~a~Iln~~~~~~~~~il~~L~ 227 (339)
T PRK05686 202 GGVKTVAEILNNLDRQTEKTILESLE 227 (339)
T ss_pred CcHHHHHHHHhcCCchHHHHHHHHHH
Confidence 35555666666666555555665554
No 26
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=71.61 E-value=82 Score=34.83 Aligned_cols=150 Identities=13% Similarity=0.185 Sum_probs=76.4
Q ss_pred cCCHHHHHHHHHHHHHhHHHhhccc------ccchHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhcccc-cHHHHhhhhh
Q 002587 723 TATTEEKNMVFQEIMPQALSLMTDV------FGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYG-CRVIQKAIEV 795 (904)
Q Consensus 723 ~as~Eer~~IfeEIlp~i~~Lm~D~------fGNyVVQKLfE~~s~eqr~~Li~~L~g~IveLS~hkyG-SrVVQKLLE~ 795 (904)
..+.......+.-+.|-++.|+-|- -|..+++++++.+.... ......+| ..|++.++..
T Consensus 107 ~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~-------------~~~L~~tGl~~v~~~al~~ 173 (282)
T PF10521_consen 107 QLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE-------------WDILRRTGLFSVFEDALFP 173 (282)
T ss_pred cCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh-------------hHHHHHcChHHHHHHHHHH
Confidence 4455556667777777777777663 46777777777776554 11122222 3333333332
Q ss_pred c--------chHHHHHHHHHHHHHHHHHhhCCCchHHHHHhhhcCChhHHHHHHHHHHHHHHHHhcCcch---hHHHHHH
Q 002587 796 V--------ELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYG---CRVIQRV 864 (904)
Q Consensus 796 ~--------~~eqk~~LVeeL~~~~l~La~DqnGNhVIQK~LE~~p~e~r~~II~~LlgqlveLSthKYG---SrVVQK~ 864 (904)
+ ++++-..++....+.+..|++-++ +.........+.+.+.+.++.-..|... -.+++.+
T Consensus 174 ~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~---------~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~l 244 (282)
T PF10521_consen 174 CLYYLPPITPEDESLELLQAAYPALLSLLKTQE---------NDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVL 244 (282)
T ss_pred HhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhc---------cCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHH
Confidence 1 124555666666667766655443 2222223333444444445555555554 3333333
Q ss_pred HhhcCcH-----HHHHHHHHHHHHHHHHHhcCcch
Q 002587 865 LEHCHDE-----KTQSIMMDEILQSVCMLAQDQYG 894 (904)
Q Consensus 865 Le~~~d~-----~~kk~II~EIl~nl~~LaqDqYG 894 (904)
++....- ..--+-+++|+..+.++.+|+|+
T Consensus 245 l~~l~~~i~~lGi~~~~hL~rii~~l~~~l~npf~ 279 (282)
T PF10521_consen 245 LQQLPPIIDELGISSVKHLQRIIPVLSQILENPFG 279 (282)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCc
Confidence 3332110 00123456666667777888775
No 27
>cd07439 FANCE_c-term Fanconi anemia complementation group E protein, C-terminal domain. Fanconi Anemia (FA) is an autosomal recessive disorder associated with increased susceptibility to various cancers, bone marrow failure, cardiac, renal, and limb malformations, and other characteristics. Cells are highly sensitive to DNA damaging agents. A multi-subunit protein complex, the FA core complex, is responsible for ubiquitination of the protein FANCD2 in response to DNA damage. This monoubiquitination results in a downstream effect on homology-directed DNA repair. FANCE is part of the FA core complex and its C-terminal domain, which is modeled here, has been shown to directly interact with FANCD2. The domain contains a five-fold repeat of a structural unit similar to ARM and HEAT repeats. FANCE appears conserved in metazoa and in plants.
Probab=70.08 E-value=1.4e+02 Score=33.12 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhCccc----CHHHHHHhhcCCHHHHHHHHHHHHH
Q 002587 697 LSEIAGHVVEFSADQYG----SRFIQQKLETATTEEKNMVFQEIMP 738 (904)
Q Consensus 697 LeeI~G~IveLA~Dq~G----SRvLQKlLE~as~Eer~~IfeEIlp 738 (904)
+.+...+|.+++....+ ....=++|+.+++++.+.++.++..
T Consensus 7 i~~~~~~ikeLl~~~~~~~~~~~~~L~~l~~~~~~~~~~lc~~L~~ 52 (254)
T cd07439 7 IQEVLEDIKELLLQEGEWLPSSPDELQFLHSCSPSQMEVLCSQLQL 52 (254)
T ss_pred HHHHHHHHHHHHHhhccCcCChHHHHHHHccCCHHHHHHHHHHhcc
Confidence 34445556666666554 5566678888999888888887654
No 28
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=69.69 E-value=7.8 Score=48.74 Aligned_cols=94 Identities=11% Similarity=0.212 Sum_probs=58.1
Q ss_pred HHHHHhhCcccCHHHHHHhhcCCHHHHHHHHHHHHHhH-----------------HHhh----cccccchHHHHHHhhCC
Q 002587 703 HVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQA-----------------LSLM----TDVFGNYVIQKFFEHGT 761 (904)
Q Consensus 703 ~IveLA~Dq~GSRvLQKlLE~as~Eer~~IfeEIlp~i-----------------~~Lm----~D~fGNyVVQKLfE~~s 761 (904)
.++.+..-.-|-++|-++|...+.+++..|+..|.-++ ..+. .+.|-..|+.-|+.+..
T Consensus 576 ~fi~~ls~~KGkkll~R~~~~l~~~q~~~il~~i~~~l~~l~vv~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~~i~ 655 (808)
T PF09770_consen 576 PFISILSVRKGKKLLPRIFPFLSQEQRLTILTMIFRHLDQLDVVRRASYTDGEDQPLLIKRDDIELFLQAVMPPLMNVIN 655 (808)
T ss_dssp HHHHHTTSHHHHHHHHHHGGGS-HHHHHHHHHHHHHTH-----------------HHHHHTTTTT--GGGGHHHS-HHHH
T ss_pred cceEEEeeCChheeHHhhhhhCChhHHHHHHHHHHHHhhhhcccccccccccccCccccchHhHHHHHHHHHHHHHHHHH
Confidence 35555566668888888888888888888888888877 2232 34455666666555554
Q ss_pred HHHHHHHHHHH-----HHHHHHHhhcccccHHHHhhhhhc
Q 002587 762 ASQVRELADQL-----TGHVLTLSLQMYGCRVIQKAIEVV 796 (904)
Q Consensus 762 ~eqr~~Li~~L-----~g~IveLS~hkyGSrVVQKLLE~~ 796 (904)
......|+..| ..++..++++++|.-+|-.+|..+
T Consensus 656 ~~~~~~i~gll~~~~~~~~~~~i~~tk~Gls~lt~llsRa 695 (808)
T PF09770_consen 656 EAPFNEIIGLLGLLINNNNVSFIAQTKFGLSLLTMLLSRA 695 (808)
T ss_dssp HHHHHHHTTSTTT-S--HHHHHHHTSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhCCCceEEEEChHHHHHHHHHHHHH
Confidence 44343333222 146677788888888777777653
No 29
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=69.37 E-value=81 Score=35.90 Aligned_cols=145 Identities=9% Similarity=0.136 Sum_probs=78.6
Q ss_pred HhhcCCHHHHHHHHHHHHHhHHHhhcccccchHHHHHHhhCCHHHHHHHHH------------------HHHHHHHHHh-
Q 002587 720 KLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELAD------------------QLTGHVLTLS- 780 (904)
Q Consensus 720 lLE~as~Eer~~IfeEIlp~i~~Lm~D~fGNyVVQKLfE~~s~eqr~~Li~------------------~L~g~IveLS- 780 (904)
.|....++....++....|+.+.+....--.-+-.++|...+++.+..|+. .|...+..+.
T Consensus 116 ~L~~ld~~~l~~lL~~EhpqtiA~iLs~l~~~~aa~vL~~l~~~~~~~v~~ria~l~~v~~~~~~~i~~~L~~~l~~~~~ 195 (339)
T PRK05686 116 FLRKMDPQQLANFIRNEHPQTIALILSYLKPDQAAEILSLLPEELRADVMMRIATLEGVSPEALKEVEEVLEKKLSSMAN 195 (339)
T ss_pred HHhcCCHHHHHHHHHhcCHHHHHHHHhCCCHHHHHHHHHhCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHhhccc
Confidence 333444555555555555555555444444445555555555544444443 3333333321
Q ss_pred ---hcccccHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhCCCchHHHHHhhh-----cCChhHHHHHHHHHHHHHHHHh
Q 002587 781 ---LQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIE-----CVPEDAIQFIVLTFYDQVVTLS 852 (904)
Q Consensus 781 ---~hkyGSrVVQKLLE~~~~eqk~~LVeeL~~~~l~La~DqnGNhVIQK~LE-----~~p~e~r~~II~~LlgqlveLS 852 (904)
...-|...+-.+|...+.+....+++.|...=..++. -|-.+++. ..++..+..|++.+-...+.++
T Consensus 196 ~~~~~~~g~~~~a~Iln~~~~~~~~~il~~L~~~d~~~a~-----~Ir~~mF~Fedl~~l~~~~l~~ll~~v~~~~L~~A 270 (339)
T PRK05686 196 ADRTKMGGVKTVAEILNNLDRQTEKTILESLEEEDPELAE-----KIKDLMFVFEDLVDLDDRSIQRLLREVDNDVLALA 270 (339)
T ss_pred ccccccCcHHHHHHHHhcCCchHHHHHHHHHHhhCHHHHH-----HHHHHhcCHHHHhcCCHHHHHHHHHhCCHHHHHHH
Confidence 2345667777888888877777777777543222221 22222222 2455566777777766666666
Q ss_pred cCcchhHHHHHHHhhcC
Q 002587 853 THPYGCRVIQRVLEHCH 869 (904)
Q Consensus 853 thKYGSrVVQK~Le~~~ 869 (904)
..--.--+.+++|...+
T Consensus 271 Lkga~~~~~~~il~nmS 287 (339)
T PRK05686 271 LKGASEELREKFLSNMS 287 (339)
T ss_pred HCCCCHHHHHHHHHhcC
Confidence 66666667777777665
No 30
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=68.74 E-value=53 Score=40.14 Aligned_cols=160 Identities=13% Similarity=0.133 Sum_probs=68.3
Q ss_pred HHHHhhC--cccCHHH---HHHhhcCCHHHHHHHHHHHHHhHHHhhcccccchHHHHHH--hhCCHHHHHHHHHHHHHHH
Q 002587 704 VVEFSAD--QYGSRFI---QQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFF--EHGTASQVRELADQLTGHV 776 (904)
Q Consensus 704 IveLA~D--q~GSRvL---QKlLE~as~Eer~~IfeEIlp~i~~Lm~D~fGNyVVQKLf--E~~s~eqr~~Li~~L~g~I 776 (904)
+..+|+| .+-+++. -++|......|+..+=+.+...+..=.....+..+-| +. +..++..|+.+++.|..++
T Consensus 83 lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~-i~~~~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 83 LPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQ-IESSKSGDEQVRERALKFLREKL 161 (556)
T ss_dssp GGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HH---HS-HHHHHHHHHHHHHHG
T ss_pred HHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHH-HHhcccCchHHHHHHHHHHHHHH
Confidence 6777776 2344543 3355555555555555544443322222222222211 11 2344556777777777766
Q ss_pred HHHhhcccc---------cHHHHhhhhhcchHHHHHHHHHHH--------------HHHHHHhhCCCchHHHHHhhhcCC
Q 002587 777 LTLSLQMYG---------CRVIQKAIEVVELDQQTQMVKELD--------------GHIMRCVRDQNGNHVIQKCIECVP 833 (904)
Q Consensus 777 veLS~hkyG---------SrVVQKLLE~~~~eqk~~LVeeL~--------------~~~l~La~DqnGNhVIQK~LE~~p 833 (904)
..|-....- +..|.|+|+.+..++...+++.|. ..++.++.+|- .+...+...+
T Consensus 162 ~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa---~Ld~~f~~sD 238 (556)
T PF05918_consen 162 KPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQA---DLDQPFDPSD 238 (556)
T ss_dssp GGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHH---TTTS---SSS
T ss_pred hhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHh---ccCCCCCCcC
Confidence 655433322 334445555555555544444332 01111111100 0000123345
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhh
Q 002587 834 EDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEH 867 (904)
Q Consensus 834 ~e~r~~II~~LlgqlveLSthKYGSrVVQK~Le~ 867 (904)
++.+++++..+...+.-++....++..+.-++++
T Consensus 239 ~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~k 272 (556)
T PF05918_consen 239 PESIDRLISCLRQALPFFSRGVSSSKFVNYMCEK 272 (556)
T ss_dssp HHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHH
Confidence 6677777777776666666666666666555554
No 31
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=68.20 E-value=1.9e+02 Score=33.35 Aligned_cols=154 Identities=10% Similarity=0.157 Sum_probs=81.9
Q ss_pred HhHHHhhcccccchHHHHHHhhCCH-HHHHHHHHHHHHHHHHHhhcccccHHHH-----hhhhh---cc--------hHH
Q 002587 738 PQALSLMTDVFGNYVIQKFFEHGTA-SQVRELADQLTGHVLTLSLQMYGCRVIQ-----KAIEV---VE--------LDQ 800 (904)
Q Consensus 738 p~i~~Lm~D~fGNyVVQKLfE~~s~-eqr~~Li~~L~g~IveLS~hkyGSrVVQ-----KLLE~---~~--------~eq 800 (904)
+.+.....+.++.++|.++++.... ..-+.++ ...+.-|+.++|+..++- +++.. ++ ..+
T Consensus 77 ~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~---~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~e 153 (372)
T PF12231_consen 77 PEIVSTLSDDFASFIIDHSIESLQNPNSPKSIC---THYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISE 153 (372)
T ss_pred HHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHH
Confidence 5566677777788888888876522 2112222 234555666666665432 22222 11 122
Q ss_pred HHHHHHHHHHHHHHH-h--hCCCchHHHHHhhhcCChhHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhcCcHHHHHHH
Q 002587 801 QTQMVKELDGHIMRC-V--RDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIM 877 (904)
Q Consensus 801 k~~LVeeL~~~~l~L-a--~DqnGNhVIQK~LE~~p~e~r~~II~~LlgqlveLSthKYGSrVVQK~Le~~~d~~~kk~I 877 (904)
+..++..|....... + .+.+--+++..++....+ .+..++....+-...|..++.-++.+..+++....+. .+
T Consensus 154 rL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~-ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~---~~ 229 (372)
T PF12231_consen 154 RLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKD-IRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG---KL 229 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc---cH
Confidence 333344433222221 1 122334666666665433 3444444444434455567777777877777654332 67
Q ss_pred HHHHHHHHHHHhcC-cchhHHH
Q 002587 878 MDEILQSVCMLAQD-QYGNYVV 898 (904)
Q Consensus 878 I~EIl~nl~~LaqD-qYGNYVV 898 (904)
++++.+.+..|..+ .-+-+|.
T Consensus 230 ~~~~~~~L~~mi~~~~~~~~a~ 251 (372)
T PF12231_consen 230 IQLYCERLKEMIKSKDEYKLAM 251 (372)
T ss_pred HHHHHHHHHHHHhCcCCcchHH
Confidence 88888888888887 4444444
No 32
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=65.44 E-value=1.8e+02 Score=33.31 Aligned_cols=85 Identities=11% Similarity=0.174 Sum_probs=46.2
Q ss_pred cccHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhCCC-chHHHHHhhhcCChhHHHHHHHHHHHHHHHHhcCcchhHHHH
Q 002587 784 YGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQN-GNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQ 862 (904)
Q Consensus 784 yGSrVVQKLLE~~~~eqk~~LVeeL~~~~l~La~Dqn-GNhVIQK~LE~~p~e~r~~II~~LlgqlveLSthKYGSrVVQ 862 (904)
-|...+..+|...+......|++.|...=..++..-- --++...++ ..++..++.|++.+-...+.++..--.--+.+
T Consensus 199 gG~~~~a~ILN~~~~~~~~~il~~L~~~dp~la~~Ir~~mF~Fedl~-~ld~~~l~~llrev~~~~L~~ALkga~~e~~~ 277 (338)
T TIGR00207 199 GGVRAVAEIINLMDRKTEKTIITSLEEFDPELAEEIKKEMFVFEDIV-DLDDRSIQRVLREVDSEDLLLALKGAEQPLRE 277 (338)
T ss_pred ChHHHHHHHHHhCCchHHHHHHHHHHHhCHHHHHHHHHHccCHHHHh-cCCHHHHHHHHHhCCHHHHHHHHCcCCHHHHH
Confidence 4667888899988887777777776543222222100 011122222 23455556666666555555555555555666
Q ss_pred HHHhhcC
Q 002587 863 RVLEHCH 869 (904)
Q Consensus 863 K~Le~~~ 869 (904)
+++...+
T Consensus 278 ~il~nmS 284 (338)
T TIGR00207 278 KFLNNMS 284 (338)
T ss_pred HHHHHhh
Confidence 6666554
No 33
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=64.96 E-value=1.2e+02 Score=34.81 Aligned_cols=89 Identities=6% Similarity=0.066 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhHHHhhccccc---chHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhcccccHHHHhhhhhcchHHHHH
Q 002587 727 EEKNMVFQEIMPQALSLMTDVFG---NYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQ 803 (904)
Q Consensus 727 Eer~~IfeEIlp~i~~Lm~D~fG---NyVVQKLfE~~s~eqr~~Li~~L~g~IveLS~hkyGSrVVQKLLE~~~~eqk~~ 803 (904)
.|+-.++..+..+....|..... -+++..++.... ..+...+..+..-...+..++.-++.+..+++....+. .
T Consensus 152 ~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k-~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~ 228 (372)
T PF12231_consen 152 SERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAK-DIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--K 228 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc--c
Confidence 46667777777777776665533 345555554433 33333333332222333345555555555555443333 4
Q ss_pred HHHHHHHHHHHHhhC
Q 002587 804 MVKELDGHIMRCVRD 818 (904)
Q Consensus 804 LVeeL~~~~l~La~D 818 (904)
+++.+.+.+.+|+.+
T Consensus 229 ~~~~~~~~L~~mi~~ 243 (372)
T PF12231_consen 229 LIQLYCERLKEMIKS 243 (372)
T ss_pred HHHHHHHHHHHHHhC
Confidence 555555556665555
No 34
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=64.11 E-value=90 Score=31.14 Aligned_cols=81 Identities=12% Similarity=0.124 Sum_probs=31.4
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhHHHhhcccccchHHHHHHhhCCHH-HHHHHHHHHHHHHHHHhhcccccHHHHhhhh
Q 002587 716 FIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTAS-QVRELADQLTGHVLTLSLQMYGCRVIQKAIE 794 (904)
Q Consensus 716 vLQKlLE~as~Eer~~IfeEIlp~i~~Lm~D~fGNyVVQKLfE~~s~e-qr~~Li~~L~g~IveLS~hkyGSrVVQKLLE 794 (904)
.|+.+|...++...+.+.+++....... ....-..|+..+++.+..+ ....++..|...+.......++..+|+++.+
T Consensus 3 ~v~~~lnklt~~n~~~~~~~l~~~~~~~-~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~~~~f~~~ll~~~~~ 81 (209)
T PF02854_consen 3 KVRGILNKLTPSNFESIIDELIKLNWSD-DPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRFPSEFRSLLLNRCQE 81 (209)
T ss_dssp HHHHHHHHCSSTTHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHCCHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 3444444444444444444444333332 1223333444444433211 2222333333222222223455555555555
Q ss_pred hcc
Q 002587 795 VVE 797 (904)
Q Consensus 795 ~~~ 797 (904)
...
T Consensus 82 ~f~ 84 (209)
T PF02854_consen 82 EFE 84 (209)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 35
>PF07165 DUF1397: Protein of unknown function (DUF1397); InterPro: IPR009832 This entry consists of several insect specific 27 kDa Haemolymph glycoprotein precursors. The function of this family is unknown [].
Probab=60.46 E-value=83 Score=33.78 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=48.1
Q ss_pred HHHHHHhhcCC-HHHHHHHHHHHHHhHHHh--hcccccchHHHHHHhhCCHHH--HHHHHHHHHHHHHHHhhcccccHHH
Q 002587 715 RFIQQKLETAT-TEEKNMVFQEIMPQALSL--MTDVFGNYVIQKFFEHGTASQ--VRELADQLTGHVLTLSLQMYGCRVI 789 (904)
Q Consensus 715 RvLQKlLE~as-~Eer~~IfeEIlp~i~~L--m~D~fGNyVVQKLfE~~s~eq--r~~Li~~L~g~IveLS~hkyGSrVV 789 (904)
..+|.=++.++ ..+++.||.+..+++..+ |.++ |..++-.+.+++. ...++..+...++++.+++.|-++.
T Consensus 51 ~~l~~eie~~~p~g~ld~vF~KyC~k~~~~~~C~~~----f~~~v~~Cl~~ee~~~~~~~~~i~~~ll~fvC~k~Gd~Ia 126 (213)
T PF07165_consen 51 TQLQQEIEEAKPTGDLDEVFNKYCPKRPQAKECFDP----FTEKVKPCLDEEEKEILDVMMNIIPSLLDFVCYKDGDRIA 126 (213)
T ss_pred HHHHHHHHHcCccccHHHHHHHHhHhhHHHHHHHHH----HHhhcccCCCHHHHHHHHHHHHHHHHHHHHHHcCCchhhH
Confidence 45777778888 568999999988877663 2233 2223333334443 3345666778999999999999865
Q ss_pred H
Q 002587 790 Q 790 (904)
Q Consensus 790 Q 790 (904)
.
T Consensus 127 l 127 (213)
T PF07165_consen 127 L 127 (213)
T ss_pred h
Confidence 4
No 36
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=57.61 E-value=1.7e+02 Score=34.62 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=38.5
Q ss_pred hhhhhcchHHHHHHHHHH-----------HHHHHHHhhCCCchHHHHHhhhcCChhHHHHHHHHHHHHHHHHhcCcchhH
Q 002587 791 KAIEVVELDQQTQMVKEL-----------DGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCR 859 (904)
Q Consensus 791 KLLE~~~~eqk~~LVeeL-----------~~~~l~La~DqnGNhVIQK~LE~~p~e~r~~II~~LlgqlveLSthKYGSr 859 (904)
++++.++.++...+++-| ...+.+|+.-+-|--=+-. ++..+++..+++|..+.--+.-.+..--+++
T Consensus 158 kal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~lda-f~~sD~d~VdRfisCl~~AvPfFargapSsk 236 (460)
T KOG2213|consen 158 KALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDA-FNVSDADYVDRFISCLLMAVPFFARGAPSSK 236 (460)
T ss_pred HHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCc-ccCCChHHHHHHHHHHHHhhhhhhcCCchhH
Confidence 445555555544444433 1234445444333222222 4455666677777776666666666655665
Q ss_pred HHHHHHhh
Q 002587 860 VIQRVLEH 867 (904)
Q Consensus 860 VVQK~Le~ 867 (904)
.+..+-++
T Consensus 237 f~~y~n~~ 244 (460)
T KOG2213|consen 237 FVEYLNKH 244 (460)
T ss_pred HHHHHHhh
Confidence 55544443
No 37
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=53.93 E-value=2.6e+02 Score=32.53 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=18.5
Q ss_pred cHHHHhhhhhcchHHHHHHHHHHHHHHH
Q 002587 786 CRVIQKAIEVVELDQQTQMVKELDGHIM 813 (904)
Q Consensus 786 SrVVQKLLE~~~~eqk~~LVeeL~~~~l 813 (904)
++|+..++..++.+.+.++++++..-+.
T Consensus 118 ~~l~~~iv~~l~~~~q~~~~~~~~~lf~ 145 (415)
T PF12460_consen 118 SRLINLIVRSLSPEKQQEILDELYSLFL 145 (415)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHc
Confidence 5666677777777777777666655444
No 38
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=53.37 E-value=53 Score=36.56 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHhh
Q 002587 839 FIVLTFYDQVVTLSTHPYGCRVIQRVLEH 867 (904)
Q Consensus 839 ~II~~LlgqlveLSthKYGSrVVQK~Le~ 867 (904)
++++.+..=...|+.++-++..+.+|+-.
T Consensus 204 RLLKhIIrCYlRLsdnprar~aL~~~LP~ 232 (262)
T PF04078_consen 204 RLLKHIIRCYLRLSDNPRAREALRQCLPD 232 (262)
T ss_dssp HHHHHHHHHHHHHTTSTTHHHHHHHHS-G
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHhCcH
Confidence 34444444466777777777777766643
No 39
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=48.71 E-value=1.4e+02 Score=38.19 Aligned_cols=46 Identities=7% Similarity=0.115 Sum_probs=37.5
Q ss_pred HhhCCCchHHHHHhhhcCChhHHHHHHHHHHHHHHHHhcCcchhHH
Q 002587 815 CVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRV 860 (904)
Q Consensus 815 La~DqnGNhVIQK~LE~~p~e~r~~II~~LlgqlveLSthKYGSrV 860 (904)
...+-...+..|-||.+-.....+.+++.|..|+-.++.|.+.+.-
T Consensus 174 ~lY~~ia~~aFqFCLkYqRktEFRrLCe~LR~HL~~i~k~~nq~~~ 219 (988)
T KOG2072|consen 174 ALYHDIARKAFQFCLKYQRKTEFRRLCELLRMHLDNINKHQNQSTR 219 (988)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccCcC
Confidence 3445566788888999887778889999999999999999987654
No 40
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=48.21 E-value=3.2e+02 Score=34.20 Aligned_cols=29 Identities=34% Similarity=0.377 Sum_probs=14.1
Q ss_pred CCchHHHHHhhhcCChhHHHHHHHHHHHH
Q 002587 819 QNGNHVIQKCIECVPEDAIQFIVLTFYDQ 847 (904)
Q Consensus 819 qnGNhVIQK~LE~~p~e~r~~II~~Llgq 847 (904)
++...|+++.++..-.......++.++..
T Consensus 216 p~~~~Vm~~fiervf~~~I~~~i~~lL~~ 244 (710)
T PF07393_consen 216 PNPEPVMQKFIERVFEQVIQEYIESLLEE 244 (710)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666554444444444444433
No 41
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=48.19 E-value=3.9e+02 Score=33.02 Aligned_cols=54 Identities=17% Similarity=0.326 Sum_probs=38.1
Q ss_pred CChhHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhcCcHHHHHHHHHHHHHHH
Q 002587 832 VPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSV 885 (904)
Q Consensus 832 ~p~e~r~~II~~LlgqlveLSthKYGSrVVQK~Le~~~d~~~kk~II~EIl~nl 885 (904)
.+....+.+.-.+...++...-+.-.-.+|..+|+.|.-+..+..++..+++.+
T Consensus 453 ~p~~~lR~~~~~ll~~iL~~~p~~~rf~~i~dlLe~c~~~~~k~~~I~~lKd~i 506 (633)
T PF08568_consen 453 CPSPELRKIAFTLLTRILHLFPEETRFKFIRDLLENCPFESLKASAIGWLKDEI 506 (633)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCcHhHHHHHHHHHhcCCCHhHHHHHHHHHHHHH
Confidence 344455555556677777777777778888999999887777766666666554
No 42
>PF11573 Med23: Mediator complex subunit 23; InterPro: IPR021629 Med23 is one of the subunits of the Tail portion of the Mediator complex that regulates RNA polymerase II activity. Med23 is required for heat-shock-specific gene expression, and has been shown to mediate transcriptional activation of E1A in mice.
Probab=47.98 E-value=88 Score=41.95 Aligned_cols=127 Identities=13% Similarity=0.033 Sum_probs=76.1
Q ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhhcccccHHHHhhhhhcchHHH--HHHHHHHH--HHHHH--HhhCCCchHHHHHhh
Q 002587 756 FFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQ--TQMVKELD--GHIMR--CVRDQNGNHVIQKCI 829 (904)
Q Consensus 756 LfE~~s~eqr~~Li~~L~g~IveLS~hkyGSrVVQKLLE~~~~eqk--~~LVeeL~--~~~l~--La~DqnGNhVIQK~L 829 (904)
++...++|+++..++++...+..++...+-.++++.+..++..... ..++++|. +.+.. -..++..-.+|+|||
T Consensus 53 ~~~~~~~Ee~~~~ik~~l~~i~~~~~~~~~~~l~d~L~~~v~~~~i~ar~vCe~lL~~~~l~~~~~~~W~~~F~lIrkiI 132 (1341)
T PF11573_consen 53 MMSSMSEEEKESCIKQYLKYIHSQSHPRRYEFLFDLLETAVNNGIIPARLVCEELLSSEKLFYLNSRFWQEKFKLIRKII 132 (1341)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCCCChHHHHHHHhcccchhhhhhHHHHHHHHHHHHHh
Confidence 4445677788888888877777777766666666666555432211 12333331 11111 133445567899999
Q ss_pred hcCChhHHHHHHHHHHHHHHHH---------hcCcchhHHHHHHHhhcCc--HHHHHHHHHHHHHH
Q 002587 830 ECVPEDAIQFIVLTFYDQVVTL---------STHPYGCRVIQRVLEHCHD--EKTQSIMMDEILQS 884 (904)
Q Consensus 830 E~~p~e~r~~II~~LlgqlveL---------SthKYGSrVVQK~Le~~~d--~~~kk~II~EIl~n 884 (904)
...+-+-++.|++.+++++..+ -.=...+.||+++++.-.. +.+ .+++||.+.
T Consensus 133 ~~VDYKGvR~Ilk~~~eK~~~iP~~~~~~~~~~l~~~~~vi~~ilDR~~~LlP~y--~~~nEi~r~ 196 (1341)
T PF11573_consen 133 HGVDYKGVREILKICLEKMQQIPSSLSPEQLPQLLAVEEVIEHILDRNACLLPAY--FAVNEIRRG 196 (1341)
T ss_pred cccCcHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHhCcccccchHH--HHHHHHHhh
Confidence 9988888888888877654332 1123578888888886332 222 456666553
No 43
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.71 E-value=1.4e+02 Score=37.71 Aligned_cols=72 Identities=13% Similarity=0.239 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCchHHHHHhhhcCChhHHHHHHH-----HHHHHHHHHhcCcchhHHHHHHHhhcC
Q 002587 798 LDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVL-----TFYDQVVTLSTHPYGCRVIQRVLEHCH 869 (904)
Q Consensus 798 ~eqk~~LVeeL~~~~l~La~DqnGNhVIQK~LE~~p~e~r~~II~-----~LlgqlveLSthKYGSrVVQK~Le~~~ 869 (904)
.+-..+|++.|..|+..---.-|-+-++-++|+.+.......|.+ .++..+..|+..++|..+-+.+++.+.
T Consensus 366 kkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~i 442 (877)
T KOG1059|consen 366 KKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAI 442 (877)
T ss_pred hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHhe
Confidence 333444555555544432222444555666666544433333322 123456677778899999999998875
No 44
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=46.42 E-value=1.8e+02 Score=35.44 Aligned_cols=71 Identities=6% Similarity=0.051 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhHHHhhcccccchHHHHHHhhCCHHHHHHHHHHHHHHHHHH--hhcccccHHHHhhhhhcch
Q 002587 726 TEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTL--SLQMYGCRVIQKAIEVVEL 798 (904)
Q Consensus 726 ~Eer~~IfeEIlp~i~~Lm~D~fGNyVVQKLfE~~s~eqr~~Li~~L~g~IveL--S~hkyGSrVVQKLLE~~~~ 798 (904)
..+...++.++..++..|-.+ -+-+|+.++..---..-..+++.+..-+..| +...|-.-|+.++++....
T Consensus 50 ~~~l~~~L~~L~~~Vs~Ld~~--~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~yl~~vl~~LV~~f~p 122 (563)
T PF05327_consen 50 VSQLIRWLKALSSCVSLLDSS--CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPKYLSPVLSMLVKNFIP 122 (563)
T ss_dssp HHHHHHHHHHHHHGGGGG-SC--CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccC
Confidence 346677788877777666655 6678899988632222223344444433333 3466777888888887653
No 45
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=43.46 E-value=6.3e+02 Score=31.68 Aligned_cols=169 Identities=14% Similarity=0.213 Sum_probs=93.3
Q ss_pred cHHHHHHHHHHHHhhCcccCHHHHHHhhcCC-------HH---HHHHHHHHHH-----------HhHHHhhccc---ccc
Q 002587 695 FELSEIAGHVVEFSADQYGSRFIQQKLETAT-------TE---EKNMVFQEIM-----------PQALSLMTDV---FGN 750 (904)
Q Consensus 695 ~~LeeI~G~IveLA~Dq~GSRvLQKlLE~as-------~E---er~~IfeEIl-----------p~i~~Lm~D~---fGN 750 (904)
+..-+.+..+..|+..-.|+.++|..+.... .. .--.|+.+|. +++..|..|. ...
T Consensus 279 mV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~Ist 358 (898)
T COG5240 279 MVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTIST 358 (898)
T ss_pred hhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchH
Confidence 3444566678888887778888877664421 11 1123455443 3466777775 567
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhcccccHHHHhhh--hhcchHHHHHHHHHHHHHHHHHhhCCCchHHHHHh
Q 002587 751 YVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAI--EVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKC 828 (904)
Q Consensus 751 yVVQKLfE~~s~eqr~~Li~~L~g~IveLS~hkyGSrVVQKLL--E~~~~eqk~~LVeeL~~~~l~La~DqnGNhVIQK~ 828 (904)
|.|-.+++.++++.+..|++.+..-+-+++-+ |---+|..+= ....+..+..+++.|...+.+=--=++-++.|..+
T Consensus 359 yAITtLLKTGt~e~idrLv~~I~sfvhD~SD~-FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdai 437 (898)
T COG5240 359 YAITTLLKTGTEETIDRLVNLIPSFVHDMSDG-FKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAI 437 (898)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHHhhccC-ceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 99999999999999999888887666665532 3222222221 11123333444444433332211112234555554
Q ss_pred hhcC--ChhHHHHHHHHHHHHHHHHhcCcchhHHHHHH
Q 002587 829 IECV--PEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRV 864 (904)
Q Consensus 829 LE~~--p~e~r~~II~~LlgqlveLSthKYGSrVVQK~ 864 (904)
.+.. .++.++.+++.|..-+..--.|+..-+++--+
T Consensus 438 sd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iL 475 (898)
T COG5240 438 SDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGIL 475 (898)
T ss_pred HHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHh
Confidence 4432 34566667776665555544555555544433
No 46
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=42.97 E-value=2.5e+02 Score=35.99 Aligned_cols=14 Identities=21% Similarity=0.109 Sum_probs=8.8
Q ss_pred CcccccCCCCCCCC
Q 002587 144 GSLFAVQPGFGGKE 157 (904)
Q Consensus 144 ~slf~~~~~~~~~~ 157 (904)
.+|+-++..++.+-
T Consensus 75 vnlvdLa~~LnVD~ 88 (803)
T PLN03083 75 VSLVDLADTIGVDL 88 (803)
T ss_pred eeHHHHhhhcCCCH
Confidence 46666677666554
No 47
>KOG2027 consensus Spindle pole body protein [Cytoskeleton]
Probab=42.48 E-value=1.8e+02 Score=34.23 Aligned_cols=14 Identities=14% Similarity=0.285 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q 002587 871 EKTQSIMMDEILQS 884 (904)
Q Consensus 871 ~~~kk~II~EIl~n 884 (904)
...+..++.||...
T Consensus 143 ~e~k~k~lkEIA~e 156 (388)
T KOG2027|consen 143 KELKEKYLKEIAKE 156 (388)
T ss_pred HHHHHHHHHHHHHH
Confidence 34456677777653
No 48
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=40.34 E-value=1.7e+02 Score=29.57 Aligned_cols=42 Identities=17% Similarity=0.362 Sum_probs=20.4
Q ss_pred ccHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhCCCchHHHHHhhh
Q 002587 785 GCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIE 830 (904)
Q Consensus 785 GSrVVQKLLE~~~~eqk~~LVeeL~~~~l~La~DqnGNhVIQK~LE 830 (904)
|+..|..++...+.++...+++ .+.+.-++.--++|.|++|.
T Consensus 47 g~~~l~~~i~~L~~~~l~~LL~----~ir~WNTNsr~~~vAQ~vL~ 88 (141)
T PF08625_consen 47 GSEELDEVIKKLDDEQLEKLLR----FIRDWNTNSRTSHVAQRVLN 88 (141)
T ss_pred hHHHHHHHHHhcCHHHHHHHHH----HHHHhhcccccHHHHHHHHH
Confidence 4555666666665555443333 33333444444455554443
No 49
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=39.91 E-value=5e+02 Score=32.03 Aligned_cols=56 Identities=9% Similarity=0.183 Sum_probs=41.7
Q ss_pred HHHHHHHhcCcchhHHHHHHHhhcCcHHH-HHHHHHHHHHHHHHHhcCc--chhHHHHH
Q 002587 845 YDQVVTLSTHPYGCRVIQRVLEHCHDEKT-QSIMMDEILQSVCMLAQDQ--YGNYVVQV 900 (904)
Q Consensus 845 lgqlveLSthKYGSrVVQK~Le~~~d~~~-kk~II~EIl~nl~~LaqDq--YGNYVVQ~ 900 (904)
.+...+|-.+.|--.+|++++....|... +.+.+++|++++...+.++ -|+||+++
T Consensus 532 ~k~~adl~~~~~~~~~L~~~~~qavd~F~~~~e~v~~i~~~ms~v~e~q~qagk~Il~q 590 (593)
T PRK15374 532 SEALADFTLARFAMDQIQQWLKQSVEIFGENQKVTAELQKAMSSAVQQNADASRFILRQ 590 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566677777777888888888766433 5678999999887776665 79999875
No 50
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.44 E-value=4.5e+02 Score=33.49 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=29.2
Q ss_pred HHHhHHHhhcccccchHHHHHHhhCC------HHHHHHHHHHHHH
Q 002587 736 IMPQALSLMTDVFGNYVIQKFFEHGT------ASQVRELADQLTG 774 (904)
Q Consensus 736 Ilp~i~~Lm~D~fGNyVVQKLfE~~s------~eqr~~Li~~L~g 774 (904)
+.|-+..||+..--|||+-|+|+.+. |...+++++-|.+
T Consensus 219 LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~ 263 (877)
T KOG1059|consen 219 LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITE 263 (877)
T ss_pred ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHH
Confidence 55789999999999999999998653 4455555555543
No 51
>PTZ00429 beta-adaptin; Provisional
Probab=39.02 E-value=7.6e+02 Score=31.60 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=16.0
Q ss_pred HHHHHhcCcchhHHHHHHHhhcC
Q 002587 847 QVVTLSTHPYGCRVIQRVLEHCH 869 (904)
Q Consensus 847 qlveLSthKYGSrVVQK~Le~~~ 869 (904)
=+..|++...-..||..+.+.+.
T Consensus 356 IL~~Lane~Nv~~IL~EL~eYa~ 378 (746)
T PTZ00429 356 LLLKLVTPSVAPEILKELAEYAS 378 (746)
T ss_pred HHHHHcCcccHHHHHHHHHHHhh
Confidence 35677777777777777777654
No 52
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=38.40 E-value=6.7e+02 Score=28.81 Aligned_cols=125 Identities=12% Similarity=0.213 Sum_probs=67.6
Q ss_pred CHHHHHHhhcC-CHHHHHHHHHHHHHhHHHhhcccccchHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhcccccHHHHhh
Q 002587 714 SRFIQQKLETA-TTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKA 792 (904)
Q Consensus 714 SRvLQKlLE~a-s~Eer~~IfeEIlp~i~~Lm~D~fGNyVVQKLfE~~s~eqr~~Li~~L~g~IveLS~hkyGSrVVQKL 792 (904)
-.+++++|+.+ .++....|++++.+.. -...+++ .++..++++...++..=..++..+.+..-+...--++
T Consensus 79 ~~~~~~~L~~alg~~~a~~il~~i~~~~-------~~~~~~~-~L~~~~~~~la~~l~~EhPQ~iAliLs~L~p~~AA~V 150 (338)
T TIGR00207 79 LDYAREVLEKALGEEKAASILNDLTSSL-------QTAPGFE-FLRKAEPQQIADFIQQEHPQTIALILSHLDPAQAADI 150 (338)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhccc-------ccCchhH-HHHCCCHHHHHHHHHccCHHHHHHHHHcCCHHHHHHH
Confidence 45668887664 4556667777765521 1121333 3444455555555554445555555544444444444
Q ss_pred hhhcchHHHHHHH------------------HHHHHHHHHHhh---CCCchHHHHHhhhcCChhHHHHHHHHHHH
Q 002587 793 IEVVELDQQTQMV------------------KELDGHIMRCVR---DQNGNHVIQKCIECVPEDAIQFIVLTFYD 846 (904)
Q Consensus 793 LE~~~~eqk~~LV------------------eeL~~~~l~La~---DqnGNhVIQK~LE~~p~e~r~~II~~Llg 846 (904)
|..++++.+..++ +.|...+..+.. ..-|-..+..+|...+....+.|++.|..
T Consensus 151 L~~Lp~~~~~ei~~ria~l~~vs~~~i~~ie~~L~~~~~~~~~~~~~~gG~~~~a~ILN~~~~~~~~~il~~L~~ 225 (338)
T TIGR00207 151 LSLFPEEVQAEVARRIATMGRTSPEVVAEVERVLEGKLDSLNSDYTKMGGVRAVAEIINLMDRKTEKTIITSLEE 225 (338)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4555444444433 222233332321 22466778889999888878888887764
No 53
>PTZ00429 beta-adaptin; Provisional
Probab=38.15 E-value=4e+02 Score=34.00 Aligned_cols=22 Identities=9% Similarity=0.235 Sum_probs=13.7
Q ss_pred HHHHhhCcccCHHHHHHhhcCC
Q 002587 704 VVEFSADQYGSRFIQQKLETAT 725 (904)
Q Consensus 704 IveLA~Dq~GSRvLQKlLE~as 725 (904)
++.++...+-..++..+.++++
T Consensus 357 L~~Lane~Nv~~IL~EL~eYa~ 378 (746)
T PTZ00429 357 LLKLVTPSVAPEILKELAEYAS 378 (746)
T ss_pred HHHHcCcccHHHHHHHHHHHhh
Confidence 5556666666666666666554
No 54
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=38.02 E-value=5.8e+02 Score=31.77 Aligned_cols=94 Identities=13% Similarity=0.144 Sum_probs=49.1
Q ss_pred HHHHHHhhc--CCHHHHHHHHHHHHHhHHHhhcccccchHHHHHHhhCC-HHHHHHHHHHHHHHHHHHhhccc----ccH
Q 002587 715 RFIQQKLET--ATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGT-ASQVRELADQLTGHVLTLSLQMY----GCR 787 (904)
Q Consensus 715 RvLQKlLE~--as~Eer~~IfeEIlp~i~~Lm~D~fGNyVVQKLfE~~s-~eqr~~Li~~L~g~IveLS~hky----GSr 787 (904)
--|||+|+. .+.++.+.+++.|+..+.+=+...- -.-+|++|+ +..++.|+..|...|..=+.+.| =-+
T Consensus 90 ~~~~k~l~~~~l~~~~~~~~l~~~~~~c~kd~is~~----k~w~f~~~~s~~~~e~~~~~l~n~~~~~~~~~~lrlh~~y 165 (757)
T KOG4368|consen 90 QQMQKLLEETQLDMNEFDNLLQPIIDTCTKDAISAG----KNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIY 165 (757)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHh----hhhhhhcCCCchHHHHHHHHHHhhhcccccchhhhhhhHH
Confidence 457888876 3456777666666553222111111 224677775 55666666666665544333322 123
Q ss_pred HHHhhhhhcchHHHHHHHHHHHHHH
Q 002587 788 VIQKAIEVVELDQQTQMVKELDGHI 812 (904)
Q Consensus 788 VVQKLLE~~~~eqk~~LVeeL~~~~ 812 (904)
+|-..+-+|..++...+++.|...+
T Consensus 166 lind~~~hcqrk~~~~~~~~l~~~v 190 (757)
T KOG4368|consen 166 LINDVLHHCQRKQARELLAALQKVV 190 (757)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555455555554433
No 55
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=37.71 E-value=2.1e+02 Score=33.85 Aligned_cols=13 Identities=8% Similarity=0.256 Sum_probs=6.2
Q ss_pred HHhhhhhcchHHH
Q 002587 789 IQKAIEVVELDQQ 801 (904)
Q Consensus 789 VQKLLE~~~~eqk 801 (904)
.++++...+++++
T Consensus 107 ~~~lL~~l~~~er 119 (449)
T TIGR00400 107 VQQLLASSTEEER 119 (449)
T ss_pred HHHHHHcCCHHHH
Confidence 3444555544444
No 56
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=37.50 E-value=67 Score=40.65 Aligned_cols=94 Identities=10% Similarity=0.213 Sum_probs=55.2
Q ss_pred HHHHHhhcccccHHHHhhhhhcchHHHHHHHHHHHHHHHHH-----------------hh----CCCchHHHHHhhhcCC
Q 002587 775 HVLTLSLQMYGCRVIQKAIEVVELDQQTQMVKELDGHIMRC-----------------VR----DQNGNHVIQKCIECVP 833 (904)
Q Consensus 775 ~IveLS~hkyGSrVVQKLLE~~~~eqk~~LVeeL~~~~l~L-----------------a~----DqnGNhVIQK~LE~~p 833 (904)
.|+.+..-.-|-++|-++|.+++.+++..|+..|..++..| +. |.+-..|+.-++.++.
T Consensus 576 ~fi~~ls~~KGkkll~R~~~~l~~~q~~~il~~i~~~l~~l~vv~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~~i~ 655 (808)
T PF09770_consen 576 PFISILSVRKGKKLLPRIFPFLSQEQRLTILTMIFRHLDQLDVVRRASYTDGEDQPLLIKRDDIELFLQAVMPPLMNVIN 655 (808)
T ss_dssp HHHHHTTSHHHHHHHHHHGGGS-HHHHHHHHHHHHHTH-----------------HHHHHTTTTT--GGGGHHHS-HHHH
T ss_pred cceEEEeeCChheeHHhhhhhCChhHHHHHHHHHHHHhhhhcccccccccccccCccccchHhHHHHHHHHHHHHHHHHH
Confidence 46677777778888888888888888877777776666222 11 2222333333333322
Q ss_pred hhHHHHHHHHH-----HHHHHHHhcCcchhHHHHHHHhhc
Q 002587 834 EDAIQFIVLTF-----YDQVVTLSTHPYGCRVIQRVLEHC 868 (904)
Q Consensus 834 ~e~r~~II~~L-----lgqlveLSthKYGSrVVQK~Le~~ 868 (904)
......|+..+ ..++.-++++|+|.-+|-.+|...
T Consensus 656 ~~~~~~i~gll~~~~~~~~~~~i~~tk~Gls~lt~llsRa 695 (808)
T PF09770_consen 656 EAPFNEIIGLLGLLINNNNVSFIAQTKFGLSLLTMLLSRA 695 (808)
T ss_dssp HHHHHHHTTSTTT-S--HHHHHHHTSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhCCCceEEEEChHHHHHHHHHHHHH
Confidence 22222222221 246888999999999999888874
No 57
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=34.35 E-value=6.4e+02 Score=31.54 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=46.0
Q ss_pred CCchHHHHHhhhcCChhHHHHHHHHHHHHHHHHh-cC----cchhHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhcCcc
Q 002587 819 QNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLS-TH----PYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQY 893 (904)
Q Consensus 819 qnGNhVIQK~LE~~p~e~r~~II~~LlgqlveLS-th----KYGSrVVQK~Le~~~d~~~kk~II~EIl~nl~~LaqDqY 893 (904)
.|.-.-+.|+|...+.+..+..|+.+..++.+=- .+ ..-+.++++||..|.... -.....+..|+...|
T Consensus 626 ~ySk~~l~kvl~~y~~kev~k~i~~l~krveKHf~~~~~~~~~~~~Ll~~vW~~~q~~~------i~~~~~l~~li~~~Y 699 (701)
T PF09763_consen 626 AYSKQELKKVLKSYPSKEVRKGIEALYKRVEKHFSRDADDPSFEEDLLQVVWSAMQEEF------IRQYERLETLIQKCY 699 (701)
T ss_pred hccHHHHHHHHHhCChHHHHHHHHHHHHHHHHHcCCccccccchhhHHHHHHHHHHHHH------HHHHHHHHHHHHHhC
Confidence 5667888999998888888887877766554322 22 366889999999874321 233344555665555
Q ss_pred h
Q 002587 894 G 894 (904)
Q Consensus 894 G 894 (904)
.
T Consensus 700 ~ 700 (701)
T PF09763_consen 700 P 700 (701)
T ss_pred C
Confidence 4
No 58
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=33.83 E-value=1.9e+02 Score=34.15 Aligned_cols=93 Identities=12% Similarity=0.136 Sum_probs=47.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhHHHhhcccccchHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhcccccHHHHhhhh
Q 002587 715 RFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMYGCRVIQKAIE 794 (904)
Q Consensus 715 RvLQKlLE~as~Eer~~IfeEIlp~i~~Lm~D~fGNyVVQKLfE~~s~eqr~~Li~~L~g~IveLS~hkyGSrVVQKLLE 794 (904)
..++++|+...+.+...+++++-++-.............-.+|++.+++.+..+++.+-..-..-.....-..=+..+++
T Consensus 21 ~~l~~~l~~~~~~dia~~l~~l~~~~~~~~~~~l~~~~~a~vl~~l~~~~~~~ll~~l~~~~~~~~~~~l~~dd~~~ll~ 100 (449)
T TIGR00400 21 SKIKEKFLKXQPXDIAEALKRLPGTELILLYRFLPKKIAVDTFSNLDQSTQNKLLNSFTNKEISEMINEMNLDDVIDLLE 100 (449)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCHHHHHHHHHhCChhhHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHcCChhHHHHHHH
Confidence 45566667777777777777665543332222233345556777777777777777665433322222222222333444
Q ss_pred hcchHHHHHHHHH
Q 002587 795 VVELDQQTQMVKE 807 (904)
Q Consensus 795 ~~~~eqk~~LVee 807 (904)
..+.+.+.+++..
T Consensus 101 ~l~~~~~~~lL~~ 113 (449)
T TIGR00400 101 EVPANVVQQLLAS 113 (449)
T ss_pred hCCHHHHHHHHHc
Confidence 4444444444433
No 59
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=33.59 E-value=9.4e+02 Score=33.16 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=17.6
Q ss_pred HhhCcccCHH----HHHHhhcCCHHHHHHHHHHHHH
Q 002587 707 FSADQYGSRF----IQQKLETATTEEKNMVFQEIMP 738 (904)
Q Consensus 707 LA~Dq~GSRv----LQKlLE~as~Eer~~IfeEIlp 738 (904)
+-.+++-|.+ ++-.|+....|.-..|+++.++
T Consensus 1451 vrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~ 1486 (1710)
T KOG1070|consen 1451 VRSSPNSSILWIRYMAFHLELSEIEKARKIAERALK 1486 (1710)
T ss_pred HhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhh
Confidence 3445555544 3445555555666667666554
No 60
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=33.24 E-value=2.8e+02 Score=28.08 Aligned_cols=55 Identities=9% Similarity=0.139 Sum_probs=28.2
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhHHHhhcccccchHHHHHHhhCCHHHHHHHHHHHH
Q 002587 717 IQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTASQVRELADQLT 773 (904)
Q Consensus 717 LQKlLE~as~Eer~~IfeEIlp~i~~Lm~D~fGNyVVQKLfE~~s~eqr~~Li~~L~ 773 (904)
|.-.|+...+-..-.||+.++. ..--.+..|+-.|+.++.....++...+++.++
T Consensus 17 l~LAl~L~~P~~ll~i~~~~~~--~~~~~~~~g~~~l~~~i~~L~~~~l~~LL~~ir 71 (141)
T PF08625_consen 17 LRLALKLDHPFRLLKILKDLLE--TEEDEDSIGSEELDEVIKKLDDEQLEKLLRFIR 71 (141)
T ss_pred HHHHHhcCCcHHHHHHHHHHHh--cccccccchHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3344444444444445554443 111122335667777777777777666555544
No 61
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=32.14 E-value=7.8e+02 Score=33.85 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHHhhCcccCHHHHHHhhcCC---HHHHHHHHHHHH
Q 002587 695 FELSEIAGHVVEFSADQYGSRFIQQKLETAT---TEEKNMVFQEIM 737 (904)
Q Consensus 695 ~~LeeI~G~IveLA~Dq~GSRvLQKlLE~as---~Eer~~IfeEIl 737 (904)
+.+-....+.++++-=.-+-.+-...|..-+ .+|+--|+-.++
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~l 1504 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYL 1504 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHH
Confidence 3444444555555544444455577777764 345555554444
No 62
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=31.95 E-value=4.3e+02 Score=27.47 Aligned_cols=47 Identities=2% Similarity=0.088 Sum_probs=20.5
Q ss_pred ccccHHHHhhhhhcchHHHHHHHHHHHHHHHHHhhCCC-chHHHHHhhh
Q 002587 783 MYGCRVIQKAIEVVELDQQTQMVKELDGHIMRCVRDQN-GNHVIQKCIE 830 (904)
Q Consensus 783 kyGSrVVQKLLE~~~~eqk~~LVeeL~~~~l~La~Dqn-GNhVIQK~LE 830 (904)
.|...++..+++.+... +..|.+.....+..++..-. ...++..++.
T Consensus 90 ~~~~~~l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~ 137 (228)
T PF12348_consen 90 PYADILLPPLLKKLGDS-KKFIREAANNALDAIIESCSYSPKILLEILS 137 (228)
T ss_dssp HHHHHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHHHHHHHHHH
Confidence 34455556666665443 22344444455555555544 3555344333
No 63
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=31.26 E-value=1e+03 Score=28.77 Aligned_cols=13 Identities=15% Similarity=0.117 Sum_probs=8.9
Q ss_pred hcCcchhHHHHHh
Q 002587 889 AQDQYGNYVVQVC 901 (904)
Q Consensus 889 aqDqYGNYVVQ~I 901 (904)
-.+|.++||..|+
T Consensus 561 ~~~QV~sfv~S~l 573 (574)
T smart00638 561 PNLQVASFVYSHI 573 (574)
T ss_pred CcHHHHHHhHHhh
Confidence 3455888887765
No 64
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=31.22 E-value=1e+03 Score=28.73 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=12.4
Q ss_pred HHHHHHhhCCHHHHHHHHHHH
Q 002587 752 VIQKFFEHGTASQVRELADQL 772 (904)
Q Consensus 752 VVQKLfE~~s~eqr~~Li~~L 772 (904)
++++.+.+..+..|...+..|
T Consensus 81 ~L~~gL~h~~~~Vr~l~l~~l 101 (503)
T PF10508_consen 81 FLQRGLTHPSPKVRRLALKQL 101 (503)
T ss_pred HHHHHhcCCCHHHHHHHHHHH
Confidence 555666666666665555543
No 65
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.68 E-value=1.4e+03 Score=30.83 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=17.9
Q ss_pred CHHHHHHhhcCCHHHHHHHHHHHHHhHH
Q 002587 714 SRFIQQKLETATTEEKNMVFQEIMPQAL 741 (904)
Q Consensus 714 SRvLQKlLE~as~Eer~~IfeEIlp~i~ 741 (904)
+..|..+++.++.+....|...|.+=++
T Consensus 718 l~~L~~L~~~~~~e~~~~i~k~I~EvIL 745 (1176)
T KOG1248|consen 718 LKCLKRLLKLLSAEHCDLIPKLIPEVIL 745 (1176)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3456777788887777766665554333
No 66
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=29.96 E-value=2.9e+02 Score=33.72 Aligned_cols=46 Identities=9% Similarity=0.044 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhhCCCchHHHHHhhhcCChhHHHHHHHHHHHHH
Q 002587 803 QMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQV 848 (904)
Q Consensus 803 ~LVeeL~~~~l~La~DqnGNhVIQK~LE~~p~e~r~~II~~Llgql 848 (904)
..++++...+..+-....-.-.|-+.|..--...+..|...|...|
T Consensus 129 ~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L~~~L~~~w 174 (593)
T PF06248_consen 129 DLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENLQYQLSEEW 174 (593)
T ss_pred HHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443223333344555554433345555665554433
No 67
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=29.92 E-value=79 Score=39.85 Aligned_cols=84 Identities=18% Similarity=0.273 Sum_probs=44.2
Q ss_pred HHhhcccccHHHHhhhhhcchHHHHH---HHHHHHHHHHHHhhCCCc--------------hHHHHHhhhcCChhHHHHH
Q 002587 778 TLSLQMYGCRVIQKAIEVVELDQQTQ---MVKELDGHIMRCVRDQNG--------------NHVIQKCIECVPEDAIQFI 840 (904)
Q Consensus 778 eLS~hkyGSrVVQKLLE~~~~eqk~~---LVeeL~~~~l~La~DqnG--------------NhVIQK~LE~~p~e~r~~I 840 (904)
.+...++=...|+|+|..|+.+.+.- ||+ .|++-.+|++| .+.+|++++|.. +.+..|
T Consensus 36 aIk~ykhVVqsVeKfi~kCkpe~Kl~gLYVID----SIVRqsrhq~~~~kd~F~prf~~n~~~tf~~L~~c~~-edks~i 110 (894)
T KOG0132|consen 36 AIKLYKHVVQSVEKFIKKCKPEYKLPGLYVID----SIVRQSRHQFGKEKDVFGPRFSKNFTGTFQNLYECPQ-EDKSDI 110 (894)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccccCeeEEeh----HHHHHHHHhhcccccccCCccchhHHHHHHHHHhcCH-HHHHHH
Confidence 33333333345667777788777653 233 33333344443 466777788744 455555
Q ss_pred HHHHHHHHHHHhcCcchhHHHHHHHhhcC
Q 002587 841 VLTFYDQVVTLSTHPYGCRVIQRVLEHCH 869 (904)
Q Consensus 841 I~~LlgqlveLSthKYGSrVVQK~Le~~~ 869 (904)
|..+- ++. ..+-|=+-+||.+++.|.
T Consensus 111 IrvlN--lwq-kn~VfK~e~IqpLlDm~~ 136 (894)
T KOG0132|consen 111 IRVLN--LWQ-KNNVFKSEIIQPLLDMAD 136 (894)
T ss_pred HHhhh--hhh-cccchhHHHHHHHHHHHh
Confidence 55432 111 011144667788877764
No 68
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=29.24 E-value=1e+03 Score=32.25 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHHHhhCcccCHHHHHHhhc---------CCHHHHHHHHHHHHHhHHHhhcccccchHH
Q 002587 695 FELSEIAGHVVEFSADQYGSRFIQQKLET---------ATTEEKNMVFQEIMPQALSLMTDVFGNYVI 753 (904)
Q Consensus 695 ~~LeeI~G~IveLA~Dq~GSRvLQKlLE~---------as~Eer~~IfeEIlp~i~~Lm~D~fGNyVV 753 (904)
..++.|..-++.|..|+..--=++.+... ..+.+-..+.+.|.|++..|..|...++|-
T Consensus 458 ~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vR 525 (1431)
T KOG1240|consen 458 VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVR 525 (1431)
T ss_pred HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceeh
Confidence 34566677778888887663222222211 122333444556888888888887555543
No 69
>KOG2235 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.79 E-value=7.2e+02 Score=31.27 Aligned_cols=30 Identities=17% Similarity=0.209 Sum_probs=18.0
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhh
Q 002587 752 VIQKFFEHGTASQVRELADQLTGHVLTLSL 781 (904)
Q Consensus 752 VVQKLfE~~s~eqr~~Li~~L~g~IveLS~ 781 (904)
.+|++|.+-....++..+..|.+.+-.|-.
T Consensus 519 r~q~if~~~~~~~rrrti~aiqdk~~~ly~ 548 (776)
T KOG2235|consen 519 RVQDIFAHQLVANRRRTISAIQDKCRQLYD 548 (776)
T ss_pred HHHHHHHhccchhhhhhHHHHHHHHHHHHH
Confidence 566777766555666666666655554443
No 70
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.49 E-value=8.6e+02 Score=29.89 Aligned_cols=189 Identities=8% Similarity=0.063 Sum_probs=0.0
Q ss_pred cCHHHHHHhhcCCHHHHHHHHHHHHHhHHHhhcccc----------cchHHHHHHhhCCHHHHHHHHHHHH------HHH
Q 002587 713 GSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVF----------GNYVIQKFFEHGTASQVRELADQLT------GHV 776 (904)
Q Consensus 713 GSRvLQKlLE~as~Eer~~IfeEIlp~i~~Lm~D~f----------GNyVVQKLfE~~s~eqr~~Li~~L~------g~I 776 (904)
.+-+++.+|.......+..+++.+.=-+..||.++. .--++-+++.+-+++......=.+. ...
T Consensus 192 ~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~ 271 (514)
T KOG0166|consen 192 SCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEK 271 (514)
T ss_pred hhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHH
Q ss_pred HHHhhcccccHHHHhhhhh------------------cchHHHHHHHHH-HHHHHHHHhhC-------CCchHHHHHhhh
Q 002587 777 LTLSLQMYGCRVIQKAIEV------------------VELDQQTQMVKE-LDGHIMRCVRD-------QNGNHVIQKCIE 830 (904)
Q Consensus 777 veLS~hkyGSrVVQKLLE~------------------~~~eqk~~LVee-L~~~~l~La~D-------qnGNhVIQK~LE 830 (904)
..+..+--.|..|-++|.+ .+..+...++.. +.+.+..|... +..+++|.-+-.
T Consensus 272 iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 272 IQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA 351 (514)
T ss_pred HHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Q ss_pred cCChhHHHHHHHH-HHHHHHHHhcC------cchhHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhcCcchhHHHHHhcC
Q 002587 831 CVPEDAIQFIVLT-FYDQVVTLSTH------PYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQVCFG 903 (904)
Q Consensus 831 ~~p~e~r~~II~~-LlgqlveLSth------KYGSrVVQK~Le~~~d~~~kk~II~EIl~nl~~LaqDqYGNYVVQ~ILE 903 (904)
+..++++.|+++ +...++.+-.. |-++.+|-.+...+..++.+-.+-.-+++.++.|. ..--.-+|+.+|+
T Consensus 352 -G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL-~~~D~~ii~v~Ld 429 (514)
T KOG0166|consen 352 -GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLL-TCPDVKIILVALD 429 (514)
T ss_pred -CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcc-cCCChHHHHHHHH
No 71
>KOG3821 consensus Heparin sulfate cell surface proteoglycan [Signal transduction mechanisms]
Probab=27.50 E-value=7.9e+02 Score=30.40 Aligned_cols=81 Identities=17% Similarity=0.245 Sum_probs=51.5
Q ss_pred chHHHHHhhhc-CChhHHHHHHHHHH-HHHHHHh----cCcchhHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhcCcch
Q 002587 821 GNHVIQKCIEC-VPEDAIQFIVLTFY-DQVVTLS----THPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYG 894 (904)
Q Consensus 821 GNhVIQK~LE~-~p~e~r~~II~~Ll-gqlveLS----thKYGSrVVQK~Le~~~d~~~kk~II~EIl~nl~~LaqDqYG 894 (904)
|+-||.+.... ..+++.+.+++.+. .+|.-|. |.-|=..|++-|+...-+ .+.-....++.+..|+.--+|
T Consensus 230 g~eVv~~~~~v~~s~~C~raLlkM~yCp~CqGl~~~kPC~gYC~NVmrGClA~~ad---Ld~~W~~~idSl~~L~~~l~g 306 (563)
T KOG3821|consen 230 GIEVVSEVDKVPFSEECSRALLKMIYCPHCQGLPSVKPCYGYCLNVMRGCLANQAD---LDPEWRNYIDSLLELADKLEG 306 (563)
T ss_pred HHHHHHHhhcCCCChHHHHHHHHHhcchhccCCCccCCcHHHHHHHHHHHhhhhcc---cchHHHHHHHHHHHHHHhhcC
Confidence 55566666654 35556666666653 4554444 233556778888887654 234566777777778777788
Q ss_pred hHHHHHhcCC
Q 002587 895 NYVVQVCFGP 904 (904)
Q Consensus 895 NYVVQ~ILEP 904 (904)
.|=|..+|+|
T Consensus 307 ~~~iesvl~~ 316 (563)
T KOG3821|consen 307 PFNIESVLLP 316 (563)
T ss_pred cchHHHHHhh
Confidence 8877777765
No 72
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=26.74 E-value=1.1e+03 Score=27.79 Aligned_cols=166 Identities=10% Similarity=0.128 Sum_probs=0.0
Q ss_pred CchhhhHHHHHhhcCcccccHHHHHHHHHHHHhhCcccCH--HHHHHhhcCCHHHHHHHHHHHHHhHHHhhcccccch--
Q 002587 676 DESFASSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSR--FIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNY-- 751 (904)
Q Consensus 676 ~D~fgS~lLEef~snk~r~~~LeeI~G~IveLA~Dq~GSR--vLQKlLE~as~Eer~~IfeEIlp~i~~Lm~D~fGNy-- 751 (904)
.|.|-.+.|.. ++....+++........+.+ .+-....-.+.+-+..|++.|..+++.+--+.=+.+
T Consensus 159 ~dayL~~~l~~---------ii~~y~~~Fl~~~~~~~~~~l~~~~~~~~~~~~~l~~~il~~i~~~fl~~~~~~p~p~l~ 229 (373)
T PF14911_consen 159 QDAYLNQQLRN---------IIQQYLPRFLPASPSKLVARLSTLLSAFTPRNEELRKFILQVIRSNFLEFKGSAPPPRLA 229 (373)
T ss_pred cChHHHHHHHH---------HHHHHHhHhccCCCccccccccccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCCcHH
Q ss_pred ----HHHHHHhhC---CHHHHHHHHHHHHHHHHHHhhccc--------ccHHHHhhhhhcc----hHHHHHHHHHHHHHH
Q 002587 752 ----VIQKFFEHG---TASQVRELADQLTGHVLTLSLQMY--------GCRVIQKAIEVVE----LDQQTQMVKELDGHI 812 (904)
Q Consensus 752 ----VVQKLfE~~---s~eqr~~Li~~L~g~IveLS~hky--------GSrVVQKLLE~~~----~eqk~~LVeeL~~~~ 812 (904)
+|+.+++.. +..+...+++.+...+++-..-.. ..-+++.+++.+. .+.+.++...|+..+
T Consensus 230 ~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfv 309 (373)
T PF14911_consen 230 SVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFV 309 (373)
T ss_pred HHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHH
Q ss_pred HH-HhhCCCchHHHHHhhhcCChhHHHHHHHHHHHHHHH
Q 002587 813 MR-CVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVT 850 (904)
Q Consensus 813 l~-La~DqnGNhVIQK~LE~~p~e~r~~II~~Llgqlve 850 (904)
.+ ++...+.-+=+-.-+....++....+|..+...+.+
T Consensus 310 qk~l~~~t~~~f~~l~~vA~l~p~lV~~Lip~i~q~l~~ 348 (373)
T PF14911_consen 310 QKYLAHYTYQYFQFLEKVAELDPQLVISLIPTIRQSLKD 348 (373)
T ss_pred HHHhhhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
No 73
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=26.20 E-value=8.3e+02 Score=29.70 Aligned_cols=59 Identities=24% Similarity=0.311 Sum_probs=39.5
Q ss_pred hhcCCHHHHHHHHHHHHHhHHHhhcccc-----------cchHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhccc
Q 002587 721 LETATTEEKNMVFQEIMPQALSLMTDVF-----------GNYVIQKFFEHGTASQVRELADQLTGHVLTLSLQMY 784 (904)
Q Consensus 721 LE~as~Eer~~IfeEIlp~i~~Lm~D~f-----------GNyVVQKLfE~~s~eqr~~Li~~L~g~IveLS~hky 784 (904)
+-.+.++++.+++.++...+..=|.|-. |+-++.|= .+-.+++|..|+.++.+|-.-.|
T Consensus 97 ~vea~p~er~~LLrdLedFAF~Gcpd~~~lq~~~s~~~~~~~~lekq-----~e~qkeLi~QLk~Ql~dLE~~AY 166 (621)
T KOG3759|consen 97 MVEADPSERLKLLRDLEDFAFKGCPDMNELQRLRSESESGNDVLEKQ-----NERQKELIKQLKEQLEDLERTAY 166 (621)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCCCcccccccccccccccchhhhhh-----cchHHHHHHHHHHHHHHHHHHHH
Confidence 3447899999999999988777777743 22222221 12346788899988887765443
No 74
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=25.95 E-value=1.1e+03 Score=30.74 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=15.9
Q ss_pred HHHHhcCcchhHHHHHHHhhcCcH
Q 002587 848 VVTLSTHPYGCRVIQRVLEHCHDE 871 (904)
Q Consensus 848 lveLSthKYGSrVVQK~Le~~~d~ 871 (904)
.-+++...|..++++++.+.+.+.
T Consensus 358 ~~el~~~~~~~r~lD~f~~y~~nN 381 (838)
T KOG2073|consen 358 LNELRAEGIAERLLDLFFEYPWNN 381 (838)
T ss_pred HhHHhhhhhHHHHHHHHHhcchhH
Confidence 456666667777777777776653
No 75
>PF08926 DUF1908: Domain of unknown function (DUF1908); InterPro: IPR015022 This domain is found in microtubule-associated serine/threonine-protein kinases. ; GO: 0000287 magnesium ion binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1V9V_A.
Probab=25.91 E-value=1.9e+02 Score=32.57 Aligned_cols=13 Identities=31% Similarity=0.304 Sum_probs=5.2
Q ss_pred HHHHHHHhHHHhh
Q 002587 732 VFQEIMPQALSLM 744 (904)
Q Consensus 732 IfeEIlp~i~~Lm 744 (904)
|+.=|..++++|+
T Consensus 160 v~~FihHQivElA 172 (282)
T PF08926_consen 160 VLRFIHHQIVELA 172 (282)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444443
No 76
>PF11510 FA_FANCE: Fanconi Anaemia group E protein FANCE; InterPro: IPR021025 Fanconi Anaemia (FA) is a cancer predisposition disorder characterised by chromosome fragility and hypersensitivity to genotoxic agents that suggest defects in the molecular mechanisms of DNA damage signalling and repair. In response to DNA damage, the FA core complex monoubiquitinates the FANCD2 protein. This ubiquitination targets FANCD2 to nuclear foci where it interacts with a variety of DNA repair proteins. The FA group E protein (FANCE) has an important role in DNA repair, functioning as the FANCD2-binding protein in the FA core complex []. This entry represents the C-terminal domain of FANCE, which consists predominantly of helices and does not contain any beta-strands. This domain folds in a continuous right-handed solenoidal pattern from its N terminus to its C terminus. ; PDB: 2ILR_A.
Probab=25.32 E-value=7.6e+02 Score=27.74 Aligned_cols=79 Identities=16% Similarity=0.293 Sum_probs=40.8
Q ss_pred cHHHHhhh--hhcchHHHHHHHHHHHHHHHHHhhCCCchHHHHHhhhcC---ChhHHHHHHHHHHHHHHHHhcCcchhHH
Q 002587 786 CRVIQKAI--EVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECV---PEDAIQFIVLTFYDQVVTLSTHPYGCRV 860 (904)
Q Consensus 786 SrVVQKLL--E~~~~eqk~~LVeeL~~~~l~La~DqnGNhVIQK~LE~~---p~e~r~~II~~LlgqlveLSthKYGSrV 860 (904)
|-+|.+++ ++..++.+..++..+. ++.-+..---|+|.+++.- +++....+++.+..+-..++++.-=+++
T Consensus 145 ~eLl~rlvk~~~l~p~~~~l~l~~~L----~~~W~E~~~~Vlq~lL~~k~~l~~~~~~~l~~~L~~~a~~~skSlkFakL 220 (263)
T PF11510_consen 145 CELLCRLVKKECLEPDHRLLLLRQIL----ELVWNEETFLVLQSLLERKVELSQELFSLLVELLCEQAPQFSKSLKFAKL 220 (263)
T ss_dssp HHHHHHHHH-TTS-HHHHHHHHHHHH----HS---HHHHHHHHHHHTT-----HHHHHHHHHHHH--------SHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHH----hCcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhHhhhcchHHHHH
Confidence 45666666 5566777766655433 3334444457888888863 4556666777777666666666555566
Q ss_pred HHHHHhhc
Q 002587 861 IQRVLEHC 868 (904)
Q Consensus 861 VQK~Le~~ 868 (904)
|-.++..+
T Consensus 221 lLtvltKy 228 (263)
T PF11510_consen 221 LLTVLTKY 228 (263)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 66666544
No 77
>COG4399 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.22 E-value=5.8e+02 Score=29.90 Aligned_cols=176 Identities=15% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhHHHhhcccccchHHHHHHhhCCH--------HHHHHHHHHHHHHHHHHhhcccccHH
Q 002587 717 IQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEHGTA--------SQVRELADQLTGHVLTLSLQMYGCRV 788 (904)
Q Consensus 717 LQKlLE~as~Eer~~IfeEIlp~i~~Lm~D~fGNyVVQKLfE~~s~--------eqr~~Li~~L~g~IveLS~hkyGSrV 788 (904)
++..++...+.-...+.....+.+..+.--.+=+-+++++|+..-. -....+.+.+...++++-.+.---..
T Consensus 154 l~~s~eq~~~~~~~ll~~~~~~~~~s~~g~~~l~~ml~~fi~e~g~l~tm~~mf~~~~~~~drl~~ellkl~~~~~t~ki 233 (376)
T COG4399 154 LVESLEQSLPSADWLLESRARPYVASLAGKIQLGDMLDQFIEEHGKLGTMVQMFVVNESLADRLQQELLKLLNREETKKI 233 (376)
T ss_pred HHHHHHhcchhHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Q ss_pred HHhhhhhcchHHHHHHHHHHHHHHHHHhhCCCchHHHHHhhhcCChhHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhc
Q 002587 789 IQKAIEVVELDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHC 868 (904)
Q Consensus 789 VQKLLE~~~~eqk~~LVeeL~~~~l~La~DqnGNhVIQK~LE~~p~e~r~~II~~LlgqlveLSthKYGSrVVQK~Le~~ 868 (904)
+|+++..--+..+..=+.++.+...+-.--..| -++++.+.. ....+.++..+..+..+..+.+..+..+.++++.
T Consensus 234 lq~Ll~ne~~~~~~k~L~e~~~~~~~~~~~~~~-s~llq~~~~--~~~~~~~~~~~~~~y~~~vteel~~~L~~~l~~~- 309 (376)
T COG4399 234 LQQLLTNEWPTFKEKPLNELTDEVVRNALAESL-SVLLQAVPS--SQAFNNPITLITNQYESYVTEELAPKLVRYLIED- 309 (376)
T ss_pred HHHHHHhhcchhchhhHHHhhHHHHHHHHHHHH-HHHHHhccc--hhhccCchhhhcccHHHHHHHHHHHHHHHHHHHH-
Q ss_pred CcHHHHHHHHHHHHH--HHHHHhcCcchhHHHHHh
Q 002587 869 HDEKTQSIMMDEILQ--SVCMLAQDQYGNYVVQVC 901 (904)
Q Consensus 869 ~d~~~kk~II~EIl~--nl~~LaqDqYGNYVVQ~I 901 (904)
....++++++ ++.+++.++...|-+..+
T Consensus 310 -----l~~~l~~il~rl~l~~~v~eqi~~fs~~~l 339 (376)
T COG4399 310 -----LSSHLAQILKRLDLEELVEEQINTFSLERL 339 (376)
T ss_pred -----HHHHHHHHHHHhhHHHHHHHHHhcCCHHHH
No 78
>KOG2219 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.18 E-value=4.8e+02 Score=32.86 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=27.5
Q ss_pred hhhcCChhHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhcCcHHHHHHHHHHHHHHH
Q 002587 828 CIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSV 885 (904)
Q Consensus 828 ~LE~~p~e~r~~II~~LlgqlveLSthKYGSrVVQK~Le~~~d~~~kk~II~EIl~nl 885 (904)
+.+....+....+|..|.+++.+|.+ .|+.-+++-....+...+++++++++
T Consensus 206 i~~~ta~eYfS~Li~fi~k~~leldt------~Vrt~e~~~ssrgkL~~~Vde~lD~l 257 (864)
T KOG2219|consen 206 IRDKTATEYFSNLIWFIGKHCLELDT------CVRTDEKHPSSRGKLSSLVDEHLDHL 257 (864)
T ss_pred HhcCcchHHHHHHHHHHHHhhhhHHH------HHhhcccCccccccHHHHHHHHHHHH
Confidence 33444455677777777778777753 23333343322222234566666654
No 79
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.15 E-value=7.2e+02 Score=30.96 Aligned_cols=77 Identities=14% Similarity=0.203 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCchHHHHHhhhcCCh-hHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhcCcHHHHHHH
Q 002587 801 QTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPE-DAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQSIM 877 (904)
Q Consensus 801 k~~LVeeL~~~~l~La~DqnGNhVIQK~LE~~p~-e~r~~II~~LlgqlveLSthKYGSrVVQK~Le~~~d~~~kk~I 877 (904)
+.++-+.+.+.++.|+.--+--.||..+-++... ..=..++.-|...+++++.-+|+...++.++........+..+
T Consensus 484 ~le~kr~ilD~~V~L~s~G~VlPVl~~i~~~~~~~~iD~SLiRyFv~eVLeii~PPYS~~Fv~~~l~ll~~~~i~~~~ 561 (584)
T PF04858_consen 484 QLELKRTILDRMVHLLSRGYVLPVLEYIRKCWARGDIDPSLIRYFVTEVLEIIGPPYSPEFVQLFLPLLENAEIRGGM 561 (584)
T ss_pred HHHHHHHHHHHHHHHHhCCeeehHHHHHHHHHhccCCcHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhhhh
Confidence 4455666778888888877777888888877544 3345788889999999999999999999998877655444333
No 80
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=25.10 E-value=1.2e+03 Score=29.07 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=6.8
Q ss_pred HHHHHHhhCCH
Q 002587 752 VIQKFFEHGTA 762 (904)
Q Consensus 752 VVQKLfE~~s~ 762 (904)
++|.++..|+.
T Consensus 109 ~l~~~~~~c~k 119 (757)
T KOG4368|consen 109 LLQPIIDTCTK 119 (757)
T ss_pred HHHHHHHHHhH
Confidence 56667666654
No 81
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=25.08 E-value=2.8e+02 Score=33.43 Aligned_cols=81 Identities=16% Similarity=0.281 Sum_probs=52.4
Q ss_pred cccccHHHHhhhhhcchH------HHHHHHHHHHHHHHHHhhCCCchHHHHHhhhcCChhHHHHHHHHHH----------
Q 002587 782 QMYGCRVIQKAIEVVELD------QQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIQFIVLTFY---------- 845 (904)
Q Consensus 782 hkyGSrVVQKLLE~~~~e------qk~~LVeeL~~~~l~La~DqnGNhVIQK~LE~~p~e~r~~II~~Ll---------- 845 (904)
.+|.+.|+|+++-.+... .+..+...|...+..|..+..-|++++ ...-++...|+..|.
T Consensus 220 ~~Y~~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~----~FS~e~f~viy~kFweLD~Dhd~li 295 (493)
T KOG2562|consen 220 ERYAETVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTR----YFSYEHFYVIYCKFWELDTDHDGLI 295 (493)
T ss_pred HHHHHHHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhh----heeHHHHHHHHHHHhhhcccccccc
Confidence 569999999998876532 222333445666777777765554444 344445555555543
Q ss_pred --HHHHHHhcCcchhHHHHHHHh
Q 002587 846 --DQVVTLSTHPYGCRVIQRVLE 866 (904)
Q Consensus 846 --gqlveLSthKYGSrVVQK~Le 866 (904)
..+...+.|-.-.++|++++.
T Consensus 296 dk~~L~ry~d~tlt~~ivdRIFs 318 (493)
T KOG2562|consen 296 DKEDLKRYGDHTLTERIVDRIFS 318 (493)
T ss_pred CHHHHHHHhccchhhHHHHHHHh
Confidence 467777778788888899888
No 82
>KOG3811 consensus Transcription factor AP-2 [Transcription]
Probab=25.08 E-value=4.4e+02 Score=31.43 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=31.7
Q ss_pred HHHhcCcchhHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhcCcch
Q 002587 849 VTLSTHPYGCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYG 894 (904)
Q Consensus 849 veLSthKYGSrVVQK~Le~~~d~~~kk~II~EIl~nl~~LaqDqYG 894 (904)
..|++|-||+--+...+... +.|++|.+.-+..|...+-+
T Consensus 375 FSLiTHGFG~pa~~a~l~s~------q~il~eal~~leK~~~~~~~ 414 (434)
T KOG3811|consen 375 FSLITHGFGSPAICAALRSL------QNILNEALKYLEKLTEGNTL 414 (434)
T ss_pred hhhhhccCCcHHHHHHHHHH------HHHHHHHHHHHHHHccCCCC
Confidence 57899999999888888752 56888888888888776654
No 83
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=24.83 E-value=4.8e+02 Score=34.49 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=7.8
Q ss_pred hhcccccHHHHhhhhhcch
Q 002587 780 SLQMYGCRVIQKAIEVVEL 798 (904)
Q Consensus 780 S~hkyGSrVVQKLLE~~~~ 798 (904)
+++.-=.-+|..++-.|.+
T Consensus 598 ~lDsr~~~~iENay~~~~P 616 (1128)
T KOG2051|consen 598 ALDSRQATLIENAYYLCNP 616 (1128)
T ss_pred hhchHHHHHHHHhHHhccC
Confidence 3333333444444444443
No 84
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=24.07 E-value=1.2e+03 Score=27.34 Aligned_cols=69 Identities=14% Similarity=0.363 Sum_probs=38.2
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhcCcHHHH-------HHHHHHHHHHHHHHhcCcch
Q 002587 825 IQKCIECVPEDAIQFIVLTFYDQVVTLSTHPYGCRVIQRVLEHCHDEKTQ-------SIMMDEILQSVCMLAQDQYG 894 (904)
Q Consensus 825 IQK~LE~~p~e~r~~II~~LlgqlveLSthKYGSrVVQK~Le~~~d~~~k-------k~II~EIl~nl~~LaqDqYG 894 (904)
|..+++..+++....++..+..++.......+ ..|.++++....++... +.|+.-|...+...++..+-
T Consensus 279 l~~il~~~~~~~f~~i~~~lf~~la~ci~S~h-~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn 354 (409)
T PF01603_consen 279 LEEILEVLPPEEFQKIMVPLFKRLAKCISSPH-FQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWN 354 (409)
T ss_dssp HHHHHTT--HHHHHHHHHHHHHHHHHHHTSSS-HHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhh
Confidence 44566666666666677666666666554444 67777777776655332 33444455555544544443
No 85
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=23.97 E-value=3.6e+02 Score=29.37 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=16.4
Q ss_pred ccCHHHHHHhhcCCHHHHHHHHHHHHHhHHHh
Q 002587 712 YGSRFIQQKLETATTEEKNMVFQEIMPQALSL 743 (904)
Q Consensus 712 ~GSRvLQKlLE~as~Eer~~IfeEIlp~i~~L 743 (904)
.||.+++-+|+. ....+.....++++++.+.
T Consensus 83 vGc~L~~~Ll~~-~eG~~~l~~~~ll~qia~~ 113 (226)
T PF14666_consen 83 VGCQLLETLLSS-PEGIKYLSESKLLPQIAEC 113 (226)
T ss_pred HHHHHHHHHHcC-cHHHHHHHHccHHHHHHHH
Confidence 477777777776 2223333344455554443
No 86
>PF03448 MgtE_N: MgtE intracellular N domain; InterPro: IPR006668 This domain is found at the N terminus of eubacterial magnesium transporters of the MgtE family IPR006667 from INTERPRO. This domain is an intracellular domain that has an alpha-helical structure. The crystal structure of the MgtE transporter [] shows two of 5 magnesium ions are in the interface between the N domain and the CBS domains. In the absence of magnesium there is a large shift between the N and CBS domains.; PDB: 2YVX_D 2ZY9_A 2YVZ_B 2YVY_A 2OUX_A 3KXR_A.
Probab=23.80 E-value=60 Score=29.59 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=6.1
Q ss_pred HHHhhhcCChhHHHH
Q 002587 825 IQKCIECVPEDAIQF 839 (904)
Q Consensus 825 IQK~LE~~p~e~r~~ 839 (904)
.++++...+++.+..
T Consensus 78 ~~~il~~l~~~~~~~ 92 (102)
T PF03448_consen 78 REKILAALDEEEREE 92 (102)
T ss_dssp HHHHHHCS-HHHHHH
T ss_pred HHHHHHcCCHHHHHH
Confidence 344444444444433
No 87
>PF11573 Med23: Mediator complex subunit 23; InterPro: IPR021629 Med23 is one of the subunits of the Tail portion of the Mediator complex that regulates RNA polymerase II activity. Med23 is required for heat-shock-specific gene expression, and has been shown to mediate transcriptional activation of E1A in mice.
Probab=23.62 E-value=3.8e+02 Score=36.45 Aligned_cols=41 Identities=10% Similarity=0.074 Sum_probs=28.6
Q ss_pred HHhhcCCHHHHHHHHHHHHHhHHHhhcccccchHHHHHHhh
Q 002587 719 QKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEH 759 (904)
Q Consensus 719 KlLE~as~Eer~~IfeEIlp~i~~Lm~D~fGNyVVQKLfE~ 759 (904)
.++...++|+++..+++++..+..+........+++-+...
T Consensus 52 ~~~~~~~~Ee~~~~ik~~l~~i~~~~~~~~~~~l~d~L~~~ 92 (1341)
T PF11573_consen 52 TMMSSMSEEEKESCIKQYLKYIHSQSHPRRYEFLFDLLETA 92 (1341)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 34556788888888888888777777666555555555443
No 88
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=23.37 E-value=1.3e+03 Score=29.93 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=7.9
Q ss_pred HHHHhhCCHHHHHHHHHHH
Q 002587 754 QKFFEHGTASQVRELADQL 772 (904)
Q Consensus 754 QKLfE~~s~eqr~~Li~~L 772 (904)
..++...+.+....|++.|
T Consensus 238 ~~~LG~~d~~~i~~ll~aL 256 (830)
T PRK07003 238 SGMLGALDQTYMVRLLDAL 256 (830)
T ss_pred HHHhCCCCHHHHHHHHHHH
Confidence 3344444444444444443
No 89
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=23.08 E-value=1.3e+02 Score=32.03 Aligned_cols=71 Identities=14% Similarity=0.229 Sum_probs=35.1
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHHHHhcCcc----hhHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhcCcchhHHHH
Q 002587 824 VIQKCIECVPEDAIQFIVLTFYDQVVTLSTHPY----GCRVIQRVLEHCHDEKTQSIMMDEILQSVCMLAQDQYGNYVVQ 899 (904)
Q Consensus 824 VIQK~LE~~p~e~r~~II~~LlgqlveLSthKY----GSrVVQK~Le~~~d~~~kk~II~EIl~nl~~LaqDqYGNYVVQ 899 (904)
.++.+|...|+.. ..++..|..++..++.+.- ...=|-.||--+- +.-=...+..+..-.+.|.||+
T Consensus 128 ~l~~li~~LP~~n-~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~L--------lr~~~~~~~~~~~~~~~~~vve 198 (203)
T cd04374 128 AIHSLVHKLPEKN-REMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTL--------LRPQEETVAAIMDIKFQNIVVE 198 (203)
T ss_pred HHHHHHHHCCHHH-HHHHHHHHHHHHHHHHhcccccCCHHHHHHHhcccc--------CCCCCccHHHHHHhHHHHHHhh
Confidence 3456777777644 4556666666666665432 1111111221110 0000011234556678888998
Q ss_pred HhcC
Q 002587 900 VCFG 903 (904)
Q Consensus 900 ~ILE 903 (904)
.+|+
T Consensus 199 ~LIe 202 (203)
T cd04374 199 ILIE 202 (203)
T ss_pred hHhc
Confidence 8876
No 90
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=23.03 E-value=7.6e+02 Score=24.61 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=9.3
Q ss_pred ccccHHHHhhhhhcc
Q 002587 783 MYGCRVIQKAIEVVE 797 (904)
Q Consensus 783 kyGSrVVQKLLE~~~ 797 (904)
.+|..+|+.+.+...
T Consensus 68 ~f~~~ll~~~~~~f~ 82 (200)
T smart00543 68 DFGSLLLERLQEEFE 82 (200)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666666543
No 91
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.89 E-value=8e+02 Score=31.89 Aligned_cols=53 Identities=11% Similarity=0.217 Sum_probs=31.5
Q ss_pred hHHHHHHhhCCHHH-----HHHHHHHHHHHHHHHhhcccccHHHHhhhhhcchHHHHH
Q 002587 751 YVIQKFFEHGTASQ-----VRELADQLTGHVLTLSLQMYGCRVIQKAIEVVELDQQTQ 803 (904)
Q Consensus 751 yVVQKLfE~~s~eq-----r~~Li~~L~g~IveLS~hkyGSrVVQKLLE~~~~eqk~~ 803 (904)
.++|.+|+.+.... ...|+.-+.+-+..-+.+.||-.+++++++..+......
T Consensus 702 rLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~~~~~~~~~p 759 (960)
T KOG1992|consen 702 RLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDHHGFYLLNTIIESIPPNELAP 759 (960)
T ss_pred HHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccchhHHHHHHHHHhcCCHhhhhH
Confidence 36777777765322 122333333333344567888888888888887665443
No 92
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=22.36 E-value=7.2e+02 Score=30.76 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhCcccCHHHHHHhhcCCHHHHHHHHHHHHHhHHHhhcccccchHHHHHHhh
Q 002587 697 LSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQALSLMTDVFGNYVIQKFFEH 759 (904)
Q Consensus 697 LeeI~G~IveLA~Dq~GSRvLQKlLE~as~Eer~~IfeEIlp~i~~Lm~D~fGNyVVQKLfE~ 759 (904)
+.-.-.+|.+.|+. .-...-|+.|+.... +.=+..+.|++..+..+..-..|+|+.|+.
T Consensus 205 lQlYy~~It~a~~g-~~~~~r~eAL~sL~T---DsGL~~LlPyFv~fIae~vs~ni~~~nL~l 263 (576)
T KOG2549|consen 205 LQLYYKEITEACTG-SDEPLRQEALQSLET---DSGLQQLLPYFVTFIAEGVSVNIVQNNLEL 263 (576)
T ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHhhcc---CccHHHHHHHHHHHHhhheeeccccccHHH
Confidence 33444556666665 122333455544322 123557889999988888888888887654
No 93
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=22.32 E-value=3.5e+02 Score=34.85 Aligned_cols=11 Identities=0% Similarity=-0.040 Sum_probs=4.9
Q ss_pred chHHHHHHhhC
Q 002587 750 NYVIQKFFEHG 760 (904)
Q Consensus 750 NyVVQKLfE~~ 760 (904)
+.|+..++..|
T Consensus 160 ~KIp~TIrSRC 170 (830)
T PRK07003 160 QKIPVTVLSRC 170 (830)
T ss_pred hhccchhhhhe
Confidence 34444444444
No 94
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=22.27 E-value=1.1e+03 Score=26.42 Aligned_cols=26 Identities=12% Similarity=0.333 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhcCcchhHHHHHh
Q 002587 876 IMMDEILQSVCMLAQDQYGNYVVQVC 901 (904)
Q Consensus 876 ~II~EIl~nl~~LaqDqYGNYVVQ~I 901 (904)
++++.|+.+...|+.|+-+...+..+
T Consensus 204 RLLKhIIrCYlRLsdnprar~aL~~~ 229 (262)
T PF04078_consen 204 RLLKHIIRCYLRLSDNPRAREALRQC 229 (262)
T ss_dssp HHHHHHHHHHHHHTTSTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHh
Confidence 44555555555555555555544443
No 95
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=22.26 E-value=3.8e+02 Score=26.67 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhcC
Q 002587 875 SIMMDEILQSVCMLAQD 891 (904)
Q Consensus 875 k~II~EIl~nl~~LaqD 891 (904)
...+++++..+...+..
T Consensus 169 ~~~l~~~~~~~~~~~~~ 185 (209)
T PF02854_consen 169 PKALDEIFERLQKYANS 185 (209)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 34556666655544443
No 96
>PF03299 TF_AP-2: Transcription factor AP-2; InterPro: IPR013854 Activator protein-2 (AP-2) transcription factors constitute a family of closely related and evolutionarily conserved proteins that bind to the DNA consensus sequence GCCNNNGGC and stimulate target gene transcription [, ]. Four different isoforms of AP-2 have been identified in mammals, termed AP-2 alpha, beta, gamma and delta. Each family member shares a common structure, possessing a proline/glutamine-rich domain in the N-terminal region, which is responsible for transcriptional activation [], and a helix-span-helix domain in the C-terminal region, which mediates dimerisation and site-specific DNA binding []. The AP-2 family have been shown to be critical regulators of gene expression during embryogenesis. They regulate the development of facial prominence and limb buds, and are essential for cranial closure and development of the lens []; they have also been implicated in tumourigenesis. AP-2 protein expression levels have been found to affect cell transformation, tumour growth and metastasis, and may predict survival in some types of cancer [, ] This entry represents the C-terminal region of these proteins, including the helix-span-helix domain.
Probab=22.01 E-value=2.6e+02 Score=30.11 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhCcccCHHHHHHhhcCCHH----H-----HHHHHHHHHHhHHHhhcc
Q 002587 699 EIAGHVVEFSADQYGSRFIQQKLETATTE----E-----KNMVFQEIMPQALSLMTD 746 (904)
Q Consensus 699 eI~G~IveLA~Dq~GSRvLQKlLE~as~E----e-----r~~IfeEIlp~i~~Lm~D 746 (904)
.+.+.+..-++.+.|.+.|.+.|+..... . ...+..-+..+++.|+.|
T Consensus 41 S~lg~~LRraK~k~~g~~lr~~L~~~gi~l~~~rrk~~~~t~~tsL~EgEAvhLA~D 97 (209)
T PF03299_consen 41 SLLGGVLRRAKSKNGGRSLREKLEKHGINLPAGRRKAANVTLFTSLVEGEAVHLARD 97 (209)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHcCCCCccccccccccchhHHHHHHHHHHHHHH
Confidence 34566888899999999999998874321 1 123333444556666665
No 97
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.91 E-value=1.3e+03 Score=29.88 Aligned_cols=67 Identities=12% Similarity=0.168 Sum_probs=47.2
Q ss_pred HHHHhhCcccCHHHHHHhhcCCHHHHHHHHHHHHHh------HHHhhcccccchHHHHHHhhCCHHHHHHHHH
Q 002587 704 VVEFSADQYGSRFIQQKLETATTEEKNMVFQEIMPQ------ALSLMTDVFGNYVIQKFFEHGTASQVRELAD 770 (904)
Q Consensus 704 IveLA~Dq~GSRvLQKlLE~as~Eer~~IfeEIlp~------i~~Lm~D~fGNyVVQKLfE~~s~eqr~~Li~ 770 (904)
|.-|-+=..-+.-|+|+++..+.+....++-+|..+ ...|..+++.+-+-+++.++-+.+....+.+
T Consensus 540 V~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~ 612 (829)
T KOG2280|consen 540 VPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYN 612 (829)
T ss_pred hHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhh
Confidence 333333344567889999999988888888887765 3557788999999998888765544444333
No 98
>KOG3252 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.38 E-value=4.9e+02 Score=28.12 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=17.1
Q ss_pred hcCcchhHHHHHHHhhcCcHHHHHHHHHHHHH
Q 002587 852 STHPYGCRVIQRVLEHCHDEKTQSIMMDEILQ 883 (904)
Q Consensus 852 SthKYGSrVVQK~Le~~~d~~~kk~II~EIl~ 883 (904)
+..+|.||||---+.+.. +.++.|+++
T Consensus 136 svr~yachvv~iTyQkI~-----k~lLaellG 162 (217)
T KOG3252|consen 136 SVRKYACHVVGITYQKID-----KWLLAELLG 162 (217)
T ss_pred HHHHHHHHheechHhhch-----HHHHHHhhC
Confidence 445788999877776642 345555554
No 99
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=20.88 E-value=1e+03 Score=26.40 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=39.4
Q ss_pred ccchHHHHHHh-hCCHHHHHHHHHHHHHHHHHHhhc------ccccHHHHhhhhhcchHH
Q 002587 748 FGNYVIQKFFE-HGTASQVRELADQLTGHVLTLSLQ------MYGCRVIQKAIEVVELDQ 800 (904)
Q Consensus 748 fGNyVVQKLfE-~~s~eqr~~Li~~L~g~IveLS~h------kyGSrVVQKLLE~~~~eq 800 (904)
+..+++.-++. ..........+..+..-++.|.-| ..||++++.+++.+....
T Consensus 95 ~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~ 154 (282)
T PF10521_consen 95 LASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE 154 (282)
T ss_pred ccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh
Confidence 34467777777 777777777777777777766655 489999999999887665
No 100
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=20.37 E-value=1.5e+03 Score=27.17 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=20.7
Q ss_pred HHHHhhhcCChhHHHHHHH-HHHHHHHHHhcCcchhH
Q 002587 824 VIQKCIECVPEDAIQFIVL-TFYDQVVTLSTHPYGCR 859 (904)
Q Consensus 824 VIQK~LE~~p~e~r~~II~-~LlgqlveLSthKYGSr 859 (904)
++.+++.....+ +.++. ...+=+.+|+..++|..
T Consensus 203 ll~~ll~eL~~d--DiLvqlnalell~~La~~~~g~~ 237 (503)
T PF10508_consen 203 LLDLLLKELDSD--DILVQLNALELLSELAETPHGLQ 237 (503)
T ss_pred HHHHHHHHhcCc--cHHHHHHHHHHHHHHHcChhHHH
Confidence 677777765442 22333 24455777888888866
No 101
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=20.29 E-value=4e+02 Score=34.41 Aligned_cols=7 Identities=43% Similarity=0.634 Sum_probs=2.9
Q ss_pred cccHHHH
Q 002587 693 KCFELSE 699 (904)
Q Consensus 693 r~~~Lee 699 (904)
|.+++++
T Consensus 122 KV~IIDE 128 (824)
T PRK07764 122 KIFIIDE 128 (824)
T ss_pred eEEEEec
Confidence 3444443
Done!