Query 002588
Match_columns 904
No_of_seqs 153 out of 277
Neff 3.6
Searched_HMMs 29240
Date Tue Mar 26 17:21:39 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002588.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1304-1308//hhsearch_pdb/002588hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m5s_A Formylmethanofuran--tet 1.0 1 1 15.7 -4.5 10 436-445 234-243 (297)
2 1ftr_A FTR, formylmethanofuran 1.0 1 1 15.5 -4.5 10 436-445 233-242 (296)
3 1kn7_A RCK4, voltage-gated pot 1.0 1 1 14.9 -0.2 15 608-622 4-18 (78)
4 3s6m_A Peptidyl-prolyl CIS-tra 1.0 1 1 14.1 -2.3 19 655-673 124-142 (167)
5 2ipq_X Hypothetical protein ST 1.0 1 1 14.1 -0.8 28 524-551 29-57 (135)
6 3rfy_A Peptidyl-prolyl CIS-tra 1.0 1 1 14.0 -2.2 33 642-674 299-345 (369)
7 3o0i_A HSP90AA1 protein; HSP90 1.0 1 1 13.6 0.4 17 274-290 111-127 (256)
8 3paj_A Nicotinate-nucleotide p 1.0 1 1 13.0 -1.8 13 841-859 189-201 (320)
9 3l0g_A Nicotinate-nucleotide p 1.0 1 1 12.8 -1.7 13 841-859 165-177 (300)
10 2ose_A Probable peptidyl-proly 1.0 1 1 12.7 -3.6 29 642-670 141-182 (234)
No 1
>1m5s_A Formylmethanofuran--tetrahydromethanopterin formyltransferase; alpha/beta sandwich; 1.85A {Methanosarcina barkeri} SCOP: d.58.33.1 d.58.33.1
Probab=1.00 E-value=1 Score=15.67 Aligned_cols=10 Identities=10% Similarity=0.288 Sum_probs=4.5
Q ss_pred CCCCCCCCCC
Q ss_conf 6999998542
Q 002588 436 PSPAPPSFAS 445 (904)
Q Consensus 436 psp~pp~~as 445 (904)
.|-+||---+
T Consensus 234 ~S~lp~~v~~ 243 (297)
T 1m5s_A 234 NTEIPADVNA 243 (297)
T ss_dssp TCCCCTTCCE
T ss_pred CCCCCCCCCE
T ss_conf 5658866775
No 2
>1ftr_A FTR, formylmethanofuran\:tetrahydromethanopterin formyltransferase; methanogenesis, archae, acyltransferase, hyperthermophilic, halophilic; 1.70A {Methanopyrus kandleri} SCOP: d.58.33.1 d.58.33.1 PDB: 2fhj_A* 2fhk_A*
Probab=1.00 E-value=1 Score=15.50 Aligned_cols=10 Identities=10% Similarity=0.195 Sum_probs=5.1
Q ss_pred CCCCCCCCCC
Q ss_conf 6999998542
Q 002588 436 PSPAPPSFAS 445 (904)
Q Consensus 436 psp~pp~~as 445 (904)
.|-+||---+
T Consensus 233 ~S~lp~~v~~ 242 (296)
T 1ftr_A 233 DNELPEGVKC 242 (296)
T ss_dssp TCCCCTTCCE
T ss_pred CCCCCCCCCE
T ss_conf 2458766775
No 3
>1kn7_A RCK4, voltage-gated potassium channel protein KV1.4; inactivation domain, membrane protein; NMR {Rattus norvegicus} SCOP: j.12.1.1 PDB: 1zto_A*
Probab=1.00 E-value=1 Score=14.88 Aligned_cols=15 Identities=47% Similarity=0.530 Sum_probs=8.9
Q ss_pred EEEEEEECCCCCCEE
Q ss_conf 899987329984200
Q 002588 608 IEVAMVSADGKPLTV 622 (904)
Q Consensus 608 ~e~am~t~dg~pl~~ 622 (904)
.|||||+||-+---.
T Consensus 4 mevamvsadssgcns 18 (78)
T 1kn7_A 4 MEVAMVSAESSGCNS 18 (78)
T ss_dssp CCCCCCCCCCTTTSC
T ss_pred EEEEEEECCCCCCCC
T ss_conf 378875225666534
No 4
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*
Probab=1.00 E-value=1 Score=14.14 Aligned_cols=19 Identities=42% Similarity=0.518 Sum_probs=11.5
Q ss_pred HHHHCHHHHHHHHHCCCCC
Q ss_conf 6420013556545157644
Q 002588 655 YTYFGRVSEKIVRVGKNKS 673 (904)
Q Consensus 655 y~y~g~v~e~i~~~~~~~~ 673 (904)
|+-||+|.|-+..+.+-..
T Consensus 124 ~~VFG~Vv~G~dvv~~I~~ 142 (167)
T 3s6m_A 124 YAVFGKVVEGQDIVDKIKA 142 (167)
T ss_dssp CCEEEEEEECHHHHHHHTT
T ss_pred CEEEEEEECCHHHHHHHHC
T ss_conf 1199999769999999971
No 5
>2ipq_X Hypothetical protein STY4665; structural genomics, unknown function, PSI, protein structur initiative; 2.20A {Salmonella typhi} SCOP: a.4.5.74
Probab=1.00 E-value=1 Score=14.09 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=15.6
Q ss_pred CCCEEEE-ECEEECCCCCCCCEECCCCCC
Q ss_conf 2005886-011100386553020345789
Q 002588 524 AGARLHI-KKLFFSESPSLKLRLLHLEKD 551 (904)
Q Consensus 524 ~garlhi-e~l~~~~sp~l~~~ll~l~~d 551 (904)
++|++|+ ++.+|.-||-.=.|-+.--.+
T Consensus 29 ~~A~VH~V~g~vfLvsP~IF~~Y~~e~~~ 57 (135)
T 2ipq_X 29 ADACVHLTCGFVFISVPGVFFLFLKSHSR 57 (135)
T ss_dssp TTCSEEEETTEEEEETTHHHHHHHHHC--
T ss_pred CCCEEEEECCEEEEECHHHHHHHHHHCCC
T ss_conf 99737998897799774999999997576
No 6
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=14.00 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=22.0
Q ss_pred CCCEEEHHHHHH--------------HHHHHCHHHHHHHHHCCCCCC
Q ss_conf 456000336877--------------764200135565451576444
Q 002588 642 NTSVEQLFFVLD--------------IYTYFGRVSEKIVRVGKNKSA 674 (904)
Q Consensus 642 ntsveql~fvl~--------------ly~y~g~v~e~i~~~~~~~~~ 674 (904)
||.--|+|++++ -|+-||+|.|-+..+.+-.+-
T Consensus 299 nSngSQFFItl~d~~L~~~~~~~LDgkytVFG~VveGmdVVdkI~~G 345 (369)
T 3rfy_A 299 DSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLKVG 345 (369)
T ss_dssp CCSSCCCCCCCEEEEECSCCCSSSCSCEEEEEEEEESTTGGGGCCTT
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHCC
T ss_conf 98652699996265567888854479801899994189999998679
No 7
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=1.00 E-value=1 Score=13.60 Aligned_cols=17 Identities=12% Similarity=0.028 Sum_probs=9.4
Q ss_pred CCCCCCCCCHHHHHHHH
Q ss_conf 23101224988899999
Q 002588 274 TEAVCPALSEPGLRALL 290 (904)
Q Consensus 274 lDEI~i~Lsd~QYralL 290 (904)
..+-+..++..++...+
T Consensus 111 I~DnG~GMt~edl~~~l 127 (256)
T 3o0i_A 111 IVDTGIGMTKADLINNL 127 (256)
T ss_dssp EEECSCCCCHHHHHTHH
T ss_pred EECCCCCCCHHHHHHHH
T ss_conf 96389896999999998
No 8
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=1.00 E-value=1 Score=12.98 Aligned_cols=13 Identities=62% Similarity=1.181 Sum_probs=0.0
Q ss_pred EEECCCHHHHHHHHHHHCC
Q ss_conf 8845852468998877132
Q 002588 841 VRLGGGMNYAEALLHRFGI 859 (904)
Q Consensus 841 vrlgggm~y~e~llhrfgi 859 (904)
||.|||.| ||||+
T Consensus 189 V~~GGg~n------HR~gL 201 (320)
T 3paj_A 189 VACGGGYN------HRIGV 201 (320)
T ss_dssp HHHTTCBC------CCSSS
T ss_pred HHHCCCCC------EECCC
T ss_conf 88648435------42366
No 9
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=1.00 E-value=1 Score=12.84 Aligned_cols=13 Identities=38% Similarity=0.613 Sum_probs=0.0
Q ss_pred EEECCCHHHHHHHHHHHCC
Q ss_conf 8845852468998877132
Q 002588 841 VRLGGGMNYAEALLHRFGI 859 (904)
Q Consensus 841 vrlgggm~y~e~llhrfgi 859 (904)
||.|||+| ||||+
T Consensus 165 V~~GGg~n------HR~gL 177 (300)
T 3l0g_A 165 VCIGGGES------YRDNL 177 (300)
T ss_dssp HHHTTCBC------SCSST
T ss_pred HHHCCCCC------CCCCC
T ss_conf 98669766------20577
No 10
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}
Probab=1.00 E-value=1 Score=12.70 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=0.0
Q ss_pred CCCEEEHHHHHHH-------------HHHHCHHHHHHHHHCC
Q ss_conf 4560003368777-------------6420013556545157
Q 002588 642 NTSVEQLFFVLDI-------------YTYFGRVSEKIVRVGK 670 (904)
Q Consensus 642 ntsveql~fvl~l-------------y~y~g~v~e~i~~~~~ 670 (904)
||.--|+|+++.- |+-||+|.|-+..+.+
T Consensus 141 ntngSQFFIt~~~~~~~~g~p~LDg~~tVFG~Vv~GmdVv~~ 182 (234)
T 2ose_A 141 RYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDK 182 (234)
T ss_dssp EEBCSCEEEESSCCCTTSSGGGSCTTSEEEEEEEECHHHHHH
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCHHHHHH
T ss_conf 985425999941765668886558981499998688999999
Done!