Query 002588
Match_columns 904
No_of_seqs 153 out of 277
Neff 3.6
Searched_HMMs 13730
Date Tue Mar 26 17:27:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002588.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1304-1308//hhsearch_scop/002588hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iyjb5 b.40.4.3 (B:2980-3117) 15.5 11 0.0008 13.7 -0.7 37 425-461 66-106 (138)
2 d1dx5i1 g.3.11.1 (I:345-387) T 6.1 54 0.004 8.9 0.6 19 437-455 2-20 (43)
3 d1pn0a3 d.16.1.2 (A:241-341) P 4.7 76 0.0055 7.9 2.8 36 602-637 18-53 (101)
4 d1ev0a_ d.71.1.1 (A:) Cell div 4.4 82 0.006 7.7 0.7 34 6-40 13-48 (58)
5 d1r0ka3 d.81.1.3 (A:127-264) 1 3.8 98 0.0071 7.2 1.0 29 596-624 29-58 (138)
6 d1cida2 b.1.1.3 (A:106-177) CD 3.0 1.3E+02 0.0098 6.2 0.6 11 592-602 48-58 (72)
7 d1eaka1 a.20.1.2 (A:32-107) Ge 2.9 1.4E+02 0.0098 6.2 0.7 33 846-878 15-47 (76)
8 d1wioa4 b.1.1.3 (A:292-363) CD 2.9 1.4E+02 0.01 6.1 0.8 11 592-602 46-56 (72)
9 d1m5sa2 d.58.33.1 (A:146-297) 2.9 19 0.0014 12.1 -4.5 25 609-633 36-60 (152)
10 d1q0qa3 d.81.1.3 (A:126-274) 1 2.6 1.6E+02 0.012 5.7 0.7 28 597-624 31-69 (149)
No 1
>d1iyjb5 b.40.4.3 (B:2980-3117) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.52 E-value=11 Score=13.66 Aligned_cols=37 Identities=41% Similarity=0.541 Sum_probs=17.7
Q ss_pred CEEEEEECCCCC---CCCCCCCCC-CCEEECCCEEEEECCC
Q ss_conf 569986233236---999998542-2222112219983011
Q 002588 425 PLICLHTLQVKP---SPAPPSFAS-RTVISCQPLMIHLQEE 461 (904)
Q Consensus 425 pl~~l~~~q~~p---sp~pp~~as-~tvi~cqpl~i~lqe~ 461 (904)
-+||.--||..| |++|-.||. .|++.+.|-..||||+
T Consensus 66 ~lia~SNLQwR~~s~s~vPtl~Age~s~FS~~PK~~Hlqe~ 106 (138)
T d1iyjb5 66 VLIAASNLQWRPESTSRVPTLFAGNFSVFSASPKEAHFQER 106 (138)
T ss_dssp CEEEEEEEEECCCTTCSSCEEEEEEEEEEESSCSSHHHHHH
T ss_pred EEEEEECCEECCCCCCCCCEEEEECCCEECCCCCHHHHHHH
T ss_conf 49998411770464788863885033222279408799999
No 2
>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.13 E-value=54 Score=8.91 Aligned_cols=19 Identities=37% Similarity=0.747 Sum_probs=15.1
Q ss_pred CCCCCCCCCCCEEECCCEE
Q ss_conf 9999985422222112219
Q 002588 437 SPAPPSFASRTVISCQPLM 455 (904)
Q Consensus 437 sp~pp~~as~tvi~cqpl~ 455 (904)
-|+-|+|-++---||||+-
T Consensus 2 e~vDPCf~~~CE~qCqP~~ 20 (43)
T d1dx5i1 2 EPVDPCFRANCEYQCQPLD 20 (43)
T ss_dssp CCCCGGGGCCCSSEEEECS
T ss_pred CCCCCCCCCCCCEEEEECC
T ss_conf 5346456997403415179
No 3
>d1pn0a3 d.16.1.2 (A:241-341) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}
Probab=4.70 E-value=76 Score=7.91 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=26.5
Q ss_pred ECCCCEEEEEEEECCCCCCEECCCCCCEEEEEEEEE
Q ss_conf 426633899987329984200289996799935420
Q 002588 602 ELKDACIEVAMVSADGKPLTVVPPPGGVVRIGVACQ 637 (904)
Q Consensus 602 el~d~~~e~am~t~dg~pl~~vpppggivr~gv~~~ 637 (904)
+.-|.+.-.|.-|++.+-+|.+|-.+|.||+.|.-+
T Consensus 18 dFPDiR~~~~I~S~~~G~vl~IPRE~~l~R~Yv~l~ 53 (101)
T d1pn0a3 18 NFPDIRSRCAIHSAESGSIMIIPRENNLVRFYVQLQ 53 (101)
T ss_dssp CCTTTTSEEEEECSSSCEEEEEECSTTCEEEEEEEC
T ss_pred CCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEECC
T ss_conf 899985378999379874999987899289999857
No 4
>d1ev0a_ d.71.1.1 (A:) Cell division protein MinE topological specificity domain {Escherichia coli [TaxId: 562]}
Probab=4.42 E-value=82 Score=7.69 Aligned_cols=34 Identities=12% Similarity=0.278 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEE--CCEEEEECCCCC
Q ss_conf 99998888676129994684022--370896052036
Q 002588 6 ARALEYTFKYWLKSFSRDQFKLQ--GRTAQLSNLDIN 40 (904)
Q Consensus 6 a~vLnryLgkYVKNLspDQLkLs--GGdVeL~NLeLK 40 (904)
..=|...+++|++ .++|+++++ .+++.++=||||
T Consensus 13 q~eil~VI~KyV~-Id~d~v~V~le~~~~~~svLEln 48 (58)
T d1ev0a_ 13 RKDILEVICKYVQ-IDPEMVTVQLEQKDGDISILELN 48 (58)
T ss_dssp HHHHHHHHHHHSC-CCGGGEEEEEEEETTTEEEEEEE
T ss_pred HHHHHHHHHHHEE-ECHHHEEEEEECCCCCEEEEEEE
T ss_conf 9999999987475-06799699986279978799998
No 5
>d1r0ka3 d.81.1.3 (A:127-264) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}
Probab=3.83 E-value=98 Score=7.16 Aligned_cols=29 Identities=14% Similarity=0.521 Sum_probs=15.7
Q ss_pred CCEEEEECCCC-EEEEEEEECCCCCCEECC
Q ss_conf 72257642663-389998732998420028
Q 002588 596 GLWKCVELKDA-CIEVAMVSADGKPLTVVP 624 (904)
Q Consensus 596 ~lw~cvel~d~-~~e~am~t~dg~pl~~vp 624 (904)
.+|+|.+-.+. .++--.+||-|+|+.+.+
T Consensus 29 AI~Q~L~~~~~~~I~kI~LTASGGPF~~~~ 58 (138)
T d1r0ka3 29 AIFQCFPHHNRDYVRRIIITASGGPFRTTS 58 (138)
T ss_dssp HHHHHCCTTCGGGEEEEEEEECCCTTTTCC
T ss_pred HHHHHHHHCCCCCCCEEEEECCCHHHHCCH
T ss_conf 899988523766302799933653343144
No 6
>d1cida2 b.1.1.3 (A:106-177) CD4 C2-set domains {Rat (Rattus rattus) [TaxId: 10117]}
Probab=2.96 E-value=1.3e+02 Score=6.22 Aligned_cols=11 Identities=27% Similarity=1.111 Sum_probs=7.6
Q ss_pred CCCCCCEEEEE
Q ss_conf 37897225764
Q 002588 592 NSNSGLWKCVE 602 (904)
Q Consensus 592 ~~~~~lw~cve 602 (904)
.+.||.|+|.=
T Consensus 48 ~PeaG~WqClL 58 (72)
T d1cida2 48 APEAGVWQCLL 58 (72)
T ss_dssp SCCSSEEEEEE
T ss_pred CCCCCEEEEEE
T ss_conf 88885678997
No 7
>d1eaka1 a.20.1.2 (A:32-107) Gelatinase A (MMP-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.94 E-value=1.4e+02 Score=6.20 Aligned_cols=33 Identities=12% Similarity=-0.004 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCC
Q ss_conf 524689988771323899999954466520038
Q 002588 846 GMNYAEALLHRFGILGPDGGPGEGLSKGIEHLS 878 (904)
Q Consensus 846 gm~y~e~llhrfgi~gpdggpg~~l~~~l~~ls 878 (904)
.+..|+.-|.|||-+-.+++.-.-++..|+.++
T Consensus 15 d~e~A~~YL~~fgyl~~~~~~~~~l~~ai~~~Q 47 (76)
T d1eaka1 15 DKELAVQYLNTFYGCPKESCNLFVLKDTLKKMQ 47 (76)
T ss_dssp HHHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 399999999995799867775079999999999
No 8
>d1wioa4 b.1.1.3 (A:292-363) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.89 E-value=1.4e+02 Score=6.14 Aligned_cols=11 Identities=36% Similarity=1.265 Sum_probs=7.9
Q ss_pred CCCCCCEEEEE
Q ss_conf 37897225764
Q 002588 592 NSNSGLWKCVE 602 (904)
Q Consensus 592 ~~~~~lw~cve 602 (904)
.+.||.|+|.=
T Consensus 46 ~PeaG~WqClL 56 (72)
T d1wioa4 46 NPEAGMWQCLL 56 (72)
T ss_dssp SCCSEEEEEEE
T ss_pred CCCCCEEEEEE
T ss_conf 88884688997
No 9
>d1m5sa2 d.58.33.1 (A:146-297) Formylmethanofuran:tetrahydromethanopterin formyltransferase {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=2.87 E-value=19 Score=12.10 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=0.0
Q ss_pred EEEEEECCCCCCEECCCCCCEEEEE
Q ss_conf 9998732998420028999679993
Q 002588 609 EVAMVSADGKPLTVVPPPGGVVRIG 633 (904)
Q Consensus 609 e~am~t~dg~pl~~vpppggivr~g 633 (904)
|+|...-..-|=..-|=||||||-|
T Consensus 36 eaAV~Ai~~v~gvI~PFPGGiVrSG 60 (152)
T d1m5sa2 36 EAAVDTIAELEGTITPFPGGIVASG 60 (152)
T ss_dssp HHHHHHHTTSTTEECCSGGGCBSSC
T ss_pred HHHHHHHHHCCCEEECCCCCCCCCC
T ss_conf 9999999838990531888610457
No 10
>d1q0qa3 d.81.1.3 (A:126-274) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}
Probab=2.57 E-value=1.6e+02 Score=5.72 Aligned_cols=28 Identities=14% Similarity=0.517 Sum_probs=0.0
Q ss_pred CEEEE-----------ECCCCEEEEEEEECCCCCCEECC
Q ss_conf 22576-----------42663389998732998420028
Q 002588 597 LWKCV-----------ELKDACIEVAMVSADGKPLTVVP 624 (904)
Q Consensus 597 lw~cv-----------el~d~~~e~am~t~dg~pl~~vp 624 (904)
+|+|. +.+.-.++--.+||-|+|+.+.+
T Consensus 31 IfQ~l~~~~~~~~~~~~~~~~~I~ki~LTASGGPF~~~~ 69 (149)
T d1q0qa3 31 IFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRETP 69 (149)
T ss_dssp HHHTSCHHHHTTTTTSCTGGGTEEEEEEEECCCTTTTSC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCC
T ss_conf 999864032016553444424604999972775103156
Done!