BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002589
         (904 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
           Tumefaciens In Complex With Adp
 pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
           Tumefaciens In Complex With Adp
          Length = 485

 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/214 (34%), Positives = 114/214 (53%), Gaps = 10/214 (4%)

Query: 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDV 697
           G +PD++H HDWQ A   P+Y        + S     T HN  +QG   A   +   L  
Sbjct: 128 GWRPDMVHAHDWQAAMT-PVYMRYAETPEIPS---LLTIHNIAFQGQFGANIFSKLALPA 183

Query: 698 QQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK 757
                   M+    ++ ++ LKG +  +  ++TVSPSYA+E+ T+E G GL   +   + 
Sbjct: 184 HAFG----MEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGMGLEGVIGSRAH 239

Query: 758 KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCI 817
              GI+NGID D WNPATD  +   Y+A +L+ +A NK+++ +H  +   D   PL   I
Sbjct: 240 VLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRID--DDGSPLFCVI 297

Query: 818 TRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPV 851
           +RL  QKG+ L+  A+   + LGG+ ++LG+  V
Sbjct: 298 SRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDV 331


>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
           Agrobacterium Tumefaciens (Non-Complexed Form)
 pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
           Agrobacterium Tumefaciens (Non-Complexed Form)
          Length = 485

 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 111/214 (51%), Gaps = 10/214 (4%)

Query: 638 GKQPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDV 697
           G +PD +H HDWQ A   P+Y        + S     T HN  +QG   A   +   L  
Sbjct: 128 GWRPDXVHAHDWQAAXT-PVYXRYAETPEIPS---LLTIHNIAFQGQFGANIFSKLALPA 183

Query: 698 QQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK 757
                    +    ++ ++ LKG +  +  ++TVSPSYA+E+ T+E G GL   +   + 
Sbjct: 184 HAFG----XEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILTAEFGXGLEGVIGSRAH 239

Query: 758 KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCI 817
              GI+NGID D WNPATD  +   Y+A +L+ +A NK+++ +H  +   D   PL   I
Sbjct: 240 VLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRID--DDGSPLFCVI 297

Query: 818 TRLVPQKGVHLIRHAIYRTLELGGQFILLGSSPV 851
           +RL  QKG+ L   A+   + LGG+ ++LG+  V
Sbjct: 298 SRLTWQKGIDLXAEAVDEIVSLGGRLVVLGAGDV 331


>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
          Length = 477

 Score =  117 bits (292), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 112/215 (52%), Gaps = 13/215 (6%)

Query: 640 QPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQ 699
           +PD++H HDW  A +AP Y      +G   A+  FT HN  YQG   A  +    L    
Sbjct: 129 RPDVVHAHDWH-AGLAPAY---LAARG-RPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSF 183

Query: 700 LNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK-- 757
            N    +     + +I+ LK  + +++ +T VSP+YA+E+   +   G+   L    +  
Sbjct: 184 FN----IHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREG 239

Query: 758 KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCI 817
           +  G+LNG+D   W+P TD  L  +Y  + L+ KAENK  ++  +GL   D + PL   +
Sbjct: 240 RLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGL-KVDDKVPLFAVV 298

Query: 818 TRLVPQKGVHLIRHAIYRTLELGGQFILLGSS-PV 851
           +RL  QKG+ L+  A+   LE GGQ  LLG+  PV
Sbjct: 299 SRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPV 333


>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
           Adp And Glucose(Wtgsb)
 pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
           Adp And Glucose(Wtgsc)
 pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
           Adp And Glucose(Wtgsd)
 pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
           Adp And Dgm
          Length = 485

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 112/215 (52%), Gaps = 13/215 (6%)

Query: 640 QPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQ 699
           +PD++H HDW  A +AP Y      +G   A+  FT HN  YQG   A  +    L    
Sbjct: 129 RPDVVHAHDWH-AGLAPAY---LAARG-RPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSF 183

Query: 700 LNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK-- 757
            N    +     + +I+ LK  + +++ +T VSP+YA+E+   +   G+   L    +  
Sbjct: 184 FN----IHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREG 239

Query: 758 KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCI 817
           +  G+LNG+D   W+P TD  L  +Y  + L+ KAENK  ++  +GL   D + PL   +
Sbjct: 240 RLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGL-KVDDKVPLFAVV 298

Query: 818 TRLVPQKGVHLIRHAIYRTLELGGQFILLGSS-PV 851
           +RL  QKG+ L+  A+   LE GGQ  LLG+  PV
Sbjct: 299 SRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPV 333


>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
           With Adp And Acceptor Analogue Heppso
 pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
           With Adp And Oligosaccharides
          Length = 485

 Score =  116 bits (291), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/215 (33%), Positives = 112/215 (52%), Gaps = 13/215 (6%)

Query: 640 QPDIIHCHDWQTAFVAPLYWDLYVPKGLNSARVCFTCHNFEYQGTAPAKELASCGLDVQQ 699
           +PD++H HDW  A +AP Y      +G   A+  FT HN  YQG   A  +    L    
Sbjct: 129 RPDVVHAHDWH-AGLAPAY---LAARG-RPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSF 183

Query: 700 LNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSK-- 757
            N    +     + +I+ LK  + +++ +T VSP+YA+E+   +   G+   L    +  
Sbjct: 184 FN----IHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREG 239

Query: 758 KFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCI 817
           +  G+LNG+D   W+P TD  L  +Y  + L+ KAENK  ++  +GL   D + PL   +
Sbjct: 240 RLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGL-KVDDKVPLFAVV 298

Query: 818 TRLVPQKGVHLIRHAIYRTLELGGQFILLGSS-PV 851
           +RL  QKG+ L+  A+   LE GGQ  LLG+  PV
Sbjct: 299 SRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPV 333


>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
           Catalytic Domain
 pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
           Catalytic Domain In Complex With Adp
          Length = 536

 Score =  103 bits (258), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 161/380 (42%), Gaps = 66/380 (17%)

Query: 512 LHVIHIAAEMAPXXXXXXXXXXXXXXXXXXQKKGHLVEIVLPKYDCMQY----------- 560
           ++V+ + AEMAP                     GH V ++ P+YD  QY           
Sbjct: 10  MNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYD--QYKDAWDTSVVAE 67

Query: 561 ----DRIDDLRALDV----VVESYFDGRLFKNKVWVSTIEGLPVYFIEPHHPDKFFWRGQ 612
               DR + +R        V   + D   F  KVW  T E +       + PD     G 
Sbjct: 68  IKVADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKI-------YGPDT----GV 116

Query: 613 FYGEHDDXXXXXXXXXAALEL--LLQAGKQP--------DIIH-CHDWQTAFVAPLYWDL 661
            Y   D+         AALE   +L     P        D++  C+DW T  +A    + 
Sbjct: 117 DY--KDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNN 174

Query: 662 YVPKGL-NSARVCFTCHNFEYQGTAPAKELASCGLDVQQLNRPDRMQDN----SAHD--- 713
           Y P G+  +A+V F  HN  YQG    +       D  +LN  +R + +      +D   
Sbjct: 175 YQPNGIYRNAKVAFCIHNISYQGRFAFE-------DYPELNLSERFRSSFDFIDGYDTPV 227

Query: 714 ---RINPLKGAIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDA 770
              +IN +K  I+ ++ V TVSP YA+E+  S   +G             GI+NG+D   
Sbjct: 228 EGRKINWMKAGILEADRVLTVSPYYAEEL-ISGIARGCELDNIMRLTGITGIVNGMDVSE 286

Query: 771 WNPATDTFLKVQYNAND-LQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQKGVHLI 829
           W+P+ D ++  +Y+A   ++ KA NKE+++   GL   D + PL+  I RL  QKG  ++
Sbjct: 287 WDPSKDKYITAKYDATTAIEAKALNKEALQAEAGL-PVDRKIPLIAFIGRLEEQKGPDVM 345

Query: 830 RHAIYRTLELGGQFILLGSS 849
             AI   ++   Q +LLG+ 
Sbjct: 346 AAAIPELMQEDVQIVLLGTG 365


>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
 pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
 pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
           With Open And Closed Conformations
          Length = 439

 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 73/205 (35%), Gaps = 51/205 (24%)

Query: 634 LLQAGKQPDIIHCHDWQTAFVAPLYWDLY-VPKGLNSARVCFTCHNFEYQGTAPAKELAS 692
           LL+    PD++H HDW T F   L    + +P         FT H    +   PA     
Sbjct: 116 LLREEPLPDVVHFHDWHTVFAGALIKKYFKIP-------AVFTIHRLN-KSKLPAFYFHE 167

Query: 693 CGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE----VRTSEGGQGL 748
            GL  +    PD          I+P       ++IVTTVS  Y  +     R  EG    
Sbjct: 168 AGLS-ELAPYPD----------IDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEG---- 212

Query: 749 HSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSAD 808
                    K   + NGID   WN +  T             + E K+S+    G+    
Sbjct: 213 ---------KITYVFNGIDCSFWNESYLT-----------GSRDERKKSLLSKFGMDEG- 251

Query: 809 ARKPLVGCITRLVPQKGVHLIRHAI 833
                +G   R   QKGV ++  AI
Sbjct: 252 VTFMFIGRFDR--GQKGVDVLLKAI 274


>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
 pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
 pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
          Length = 440

 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 73/205 (35%), Gaps = 51/205 (24%)

Query: 634 LLQAGKQPDIIHCHDWQTAFVAPLYWDLY-VPKGLNSARVCFTCHNFEYQGTAPAKELAS 692
           LL+    PD++H HDW T F   L    + +P         FT H    +   PA     
Sbjct: 117 LLREEPLPDVVHFHDWHTVFAGALIKKYFKIP-------AVFTIHRLN-KSKLPAFYFHE 168

Query: 693 CGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE----VRTSEGGQGL 748
            GL  +    PD          I+P       ++IVTTVS  Y  +     R  EG    
Sbjct: 169 AGLS-ELAPYPD----------IDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEG---- 213

Query: 749 HSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSAD 808
                    K   + NGID   WN +  T             + E K+S+    G+    
Sbjct: 214 ---------KITYVFNGIDCSFWNESYLT-----------GSRDERKKSLLSKFGMDEG- 252

Query: 809 ARKPLVGCITRLVPQKGVHLIRHAI 833
                +G   R   QKGV ++  AI
Sbjct: 253 VTFMFIGRFDR--GQKGVDVLLKAI 275


>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
           Pyrococcus Abyssi
 pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
           Pyrococcus Abyssi
          Length = 428

 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 73/205 (35%), Gaps = 51/205 (24%)

Query: 634 LLQAGKQPDIIHCHDWQTAFVAPLYWDLY-VPKGLNSARVCFTCHNFEYQGTAPAKELAS 692
           LL+    PD++H HDW T F   L    + +P         FT H    +   PA     
Sbjct: 116 LLREEPLPDVVHFHDWHTVFAGALIKKYFKIP-------AVFTIHRLN-KSKLPAFYFHE 167

Query: 693 CGLDVQQLNRPDRMQDNSAHDRINPLKGAIVFSNIVTTVSPSYAQE----VRTSEGGQGL 748
            GL  +    PD          I+P       ++IVTTVS  Y  +     R  EG    
Sbjct: 168 AGLS-ELAPYPD----------IDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEG---- 212

Query: 749 HSTLNFHSKKFVGILNGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSAD 808
                    K   + NGID   WN +  T             + E K+S+    G+    
Sbjct: 213 ---------KITYVFNGIDCSFWNESYLT-----------GSRDERKKSLLSKFGMDEG- 251

Query: 809 ARKPLVGCITRLVPQKGVHLIRHAI 833
                +G   R   QKGV ++  AI
Sbjct: 252 VTFMFIGRFDR--GQKGVDVLLKAI 274


>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
           Bound To Gdp (Orthorhombic Crystal Form)
 pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
           Bound To Gdp-Man (Orthorhombic Crystal Form)
          Length = 394

 Score = 33.9 bits (76), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 19/62 (30%)

Query: 764 NGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQ 823
           +G+D   + PAT                 E+K + RK LG +      P++ C +RLVP+
Sbjct: 170 SGVDVKRFTPAT----------------PEDKSATRKKLGFTDT---TPVIACNSRLVPR 210

Query: 824 KG 825
           KG
Sbjct: 211 KG 212


>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
           Complex With Gdp-Man (Triclinic Crystal Form)
 pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
           Complex With Gdp-Man (Triclinic Crystal Form)
          Length = 381

 Score = 33.9 bits (76), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 19/62 (30%)

Query: 764 NGIDTDAWNPATDTFLKVQYNANDLQGKAENKESIRKHLGLSSADARKPLVGCITRLVPQ 823
           +G+D   + PAT                 E+K + RK LG +      P++ C +RLVP+
Sbjct: 170 SGVDVKRFTPAT----------------PEDKSATRKKLGFTDT---TPVIACNSRLVPR 210

Query: 824 KG 825
           KG
Sbjct: 211 KG 212


>pdb|1JR9|A Chain A, Crystal Structure Of Manganese Superoxide Dismutases From
           Bacillus Halodenitrificans
          Length = 202

 Score = 30.0 bits (66), Expect = 5.6,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 7/57 (12%)

Query: 91  IDREPIDVEHTEEQNLGSVFVPELKESLVLNCDGGEELSTSQLDNLISMIRNAEKNI 147
           ID+E +++ HT+  N    +V +L  +L    +G E+L    L++LIS +    +NI
Sbjct: 19  IDKETMNIHHTKHHN---TYVTKLNGAL----EGHEDLKNKSLNDLISNLDAVPENI 68


>pdb|3N53|A Chain A, Crystal Structure Of A Response Regulator Receiver
           Modulated Diguanylate Cyclase From Pelobacter
           Carbinolicus
 pdb|3N53|B Chain B, Crystal Structure Of A Response Regulator Receiver
           Modulated Diguanylate Cyclase From Pelobacter
           Carbinolicus
          Length = 140

 Score = 30.0 bits (66), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 721 AIVFSNIVTTVSPSYAQEVRTSEGGQGLHSTLNFHSKKFVGILNGIDTDAWNPATDTFLK 780
            I+  +I+   SP+   +++ S+G + +   L F S+    I+NG+ + A     D +L 
Sbjct: 50  VILDXDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGA-----DDYLT 104

Query: 781 VQYNANDLQGKAE 793
             +N NDL  + E
Sbjct: 105 KPFNRNDLLSRIE 117


>pdb|3L8M|A Chain A, Crystal Structure Of A Probable Thiamine Pyrophosphokinase
           From Staphylococcus Saprophyticus Subsp. Saprophyticus.
           Northeast Structural Genomics Consortium Target Id Syr86
 pdb|3L8M|B Chain B, Crystal Structure Of A Probable Thiamine Pyrophosphokinase
           From Staphylococcus Saprophyticus Subsp. Saprophyticus.
           Northeast Structural Genomics Consortium Target Id Syr86
          Length = 212

 Score = 29.3 bits (64), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 841 GQFILLGSSPVPHIQVYPILLSSFSFLRKHIFNICNLYIKLGQGGDLTVNNNCEPWLHHI 900
           GQF +  S   P+I   P++  +   L+   +N+ N  +KLG    LT++N       +I
Sbjct: 140 GQFNVTYSEQFPYISFIPVIYPTVISLKGFKYNLQNETLKLGS--TLTISNELSQSCGNI 197

Query: 901 EV 902
           E+
Sbjct: 198 EI 199


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,676,054
Number of Sequences: 62578
Number of extensions: 1000294
Number of successful extensions: 3076
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 3002
Number of HSP's gapped (non-prelim): 94
length of query: 904
length of database: 14,973,337
effective HSP length: 108
effective length of query: 796
effective length of database: 8,214,913
effective search space: 6539070748
effective search space used: 6539070748
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)